-- dump date 20140620_032358 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 316055000001 SEQ_END SEQ_END NC_008435.1 5505494 5505494 DR NC_008435.1; contig end 5505494..5505494 Rhodopseudomonas palustris BisA53 YP_778942.1 CDS dnaA NC_008435.1 641 2065 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 641..2065 Rhodopseudomonas palustris BisA53 4358782 YP_778943.1 CDS RPE_0002 NC_008435.1 2306 3424 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2306..3424 Rhodopseudomonas palustris BisA53 4358783 YP_778944.1 CDS recF NC_008435.1 3588 4727 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3588..4727 Rhodopseudomonas palustris BisA53 4358784 YP_778945.1 CDS RPE_0004 NC_008435.1 4860 6068 D KEGG: rpc:RPC_0004 hypothetical protein; hypothetical protein 4860..6068 Rhodopseudomonas palustris BisA53 4358785 YP_778946.1 CDS gyrB NC_008435.1 6454 8895 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 6454..8895 Rhodopseudomonas palustris BisA53 4358786 YP_778947.1 CDS RPE_0006 NC_008435.1 9047 10018 R PFAM: HWE histidine kinase; KEGG: nwi:Nwi_0559 HWE histidine kinase; signal transduction histidine kinase complement(9047..10018) Rhodopseudomonas palustris BisA53 4358787 YP_778948.1 CDS RPE_0007 NC_008435.1 10175 11107 D KEGG: bja:blr2658 hypothetical protein; hypothetical protein 10175..11107 Rhodopseudomonas palustris BisA53 4358788 YP_778949.1 CDS RPE_0008 NC_008435.1 11109 11618 R PFAM: regulatory protein, AsnC/Lrp family; KEGG: rpc:RPC_0007 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(11109..11618) Rhodopseudomonas palustris BisA53 4358789 YP_778950.1 CDS RPE_0009 NC_008435.1 11769 11999 R KEGG: rpb:RPB_0008 hypothetical protein; hypothetical protein complement(11769..11999) Rhodopseudomonas palustris BisA53 4358790 YP_778951.1 CDS RPE_0010 NC_008435.1 12084 12401 R hypothetical protein complement(12084..12401) Rhodopseudomonas palustris BisA53 4358791 YP_778952.1 CDS RPE_0011 NC_008435.1 12494 12673 R TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: rpc:RPC_0008 cytochrome oxidase maturation protein, cbb3-type; cbb3-type cytochrome oxidase maturation protein complement(12494..12673) Rhodopseudomonas palustris BisA53 4358792 YP_778953.1 CDS RPE_0012 NC_008435.1 12686 14860 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rpc:RPC_0009 copper-translocating P-type ATPase; copper-translocating P-type ATPase complement(12686..14860) Rhodopseudomonas palustris BisA53 4358793 YP_778954.1 CDS RPE_0013 NC_008435.1 14871 15371 R PFAM: FixH family protein; KEGG: rpc:RPC_0010 FixH; FixH family protein complement(14871..15371) Rhodopseudomonas palustris BisA53 4358794 YP_778955.1 CDS RPE_0014 NC_008435.1 15392 16849 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rpc:RPC_0011 4Fe-4S ferredoxin, iron-sulfur binding domain; 4Fe-4S ferredoxin complement(15392..16849) Rhodopseudomonas palustris BisA53 4358795 YP_778956.1 CDS RPE_0015 NC_008435.1 16971 17852 R TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: rpc:RPC_0012 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III complement(16971..17852) Rhodopseudomonas palustris BisA53 4358796 YP_778957.1 CDS RPE_0016 NC_008435.1 17859 18023 R PFAM: Cbb3-type cytochrome oxidase component; KEGG: rpc:RPC_0013 Cbb3-type cytochrome oxidase component; cbb3-type cytochrome oxidase subunit complement(17859..18023) Rhodopseudomonas palustris BisA53 4358797 YP_778958.1 CDS RPE_0017 NC_008435.1 18036 18770 R CcoO; FixO; cbb3-type cytochrome c oxidase subunit II complement(18036..18770) Rhodopseudomonas palustris BisA53 4357791 YP_778959.1 CDS RPE_0018 NC_008435.1 18783 20429 R CcoN; FixN; cbb3-type cytochrome c oxidase subunit I complement(18783..20429) Rhodopseudomonas palustris BisA53 4357792 YP_778960.1 CDS RPE_0019 NC_008435.1 20685 21605 R KEGG: rpc:RPC_0016 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase complement(20685..21605) Rhodopseudomonas palustris BisA53 4357793 YP_778961.1 CDS RPE_0020 NC_008435.1 21866 22603 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpd:RPD_0728 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(21866..22603) Rhodopseudomonas palustris BisA53 4357794 YP_778962.1 CDS RPE_0021 NC_008435.1 22712 23311 R PFAM: DSBA oxidoreductase; KEGG: rpd:RPD_0727 DsbA oxidoreductase; DSBA oxidoreductase complement(22712..23311) Rhodopseudomonas palustris BisA53 4357795 YP_778963.1 CDS RPE_0022 NC_008435.1 23525 24232 D PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: bja:bll0585 glutathione S-transferase family protein; glutathione S-transferase 23525..24232 Rhodopseudomonas palustris BisA53 4357796 YP_778964.1 CDS RPE_0023 NC_008435.1 24432 25328 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpc:RPC_0020 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase complement(24432..25328) Rhodopseudomonas palustris BisA53 4357797 YP_778965.1 CDS RPE_0024 NC_008435.1 25421 27181 R KEGG: rpc:RPC_0021 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(25421..27181) Rhodopseudomonas palustris BisA53 4357798 YP_778966.1 CDS RPE_0025 NC_008435.1 27247 28629 D PFAM: major facilitator superfamily MFS_1; KEGG: rpc:RPC_0022 major facilitator superfamily MFS_1; major facilitator transporter 27247..28629 Rhodopseudomonas palustris BisA53 4357799 YP_778967.1 CDS purH NC_008435.1 28806 30410 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(28806..30410) Rhodopseudomonas palustris BisA53 4357800 YP_778968.1 CDS RPE_0027 NC_008435.1 30655 32409 R PFAM: Heparinase II/III family protein; KEGG: rpc:RPC_0024 heparinase II/III-like; heparinase II/III-like protein complement(30655..32409) Rhodopseudomonas palustris BisA53 4357801 YP_778969.1 CDS RPE_0028 NC_008435.1 32688 34037 R TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; Methyltransferase type 11; KEGG: rpc:RPC_0025 Fmu (Sun); sun protein complement(32688..34037) Rhodopseudomonas palustris BisA53 4357802 YP_778970.1 CDS RPE_0029 NC_008435.1 34221 34469 D PFAM: protein of unknown function DUF1674; KEGG: nha:Nham_0198 protein of unknown function DUF1674; hypothetical protein 34221..34469 Rhodopseudomonas palustris BisA53 4357803 YP_778971.1 CDS RPE_0030 NC_008435.1 34487 35251 R KEGG: rpb:RPB_0367 conserved hypothetical protein PA1030; hypothetical protein complement(34487..35251) Rhodopseudomonas palustris BisA53 4357804 YP_778972.1 CDS RPE_0031 NC_008435.1 35211 35591 R KEGG: rpb:RPB_0368 hypothetical protein; hypothetical protein complement(35211..35591) Rhodopseudomonas palustris BisA53 4357805 YP_778973.1 CDS RPE_0032 NC_008435.1 35733 36311 D PFAM: nuclease (SNase domain protein); KEGG: rpc:RPC_0029 nuclease (SNase-like); nuclease 35733..36311 Rhodopseudomonas palustris BisA53 4357806 YP_778974.1 CDS RPE_0033 NC_008435.1 36314 38068 R PFAM: Alkaline phosphatase; KEGG: rpc:RPC_0030 alkaline phosphatase; alkaline phosphatase complement(36314..38068) Rhodopseudomonas palustris BisA53 4357807 YP_778975.1 CDS RPE_0034 NC_008435.1 38315 39652 R catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase complement(38315..39652) Rhodopseudomonas palustris BisA53 4357808 YP_778976.1 CDS RPE_0035 NC_008435.1 39755 40534 R PFAM: phosphoesterase, PA-phosphatase related; KEGG: rpc:RPC_0032 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase complement(39755..40534) Rhodopseudomonas palustris BisA53 4357740 YP_778977.1 CDS RPE_0036 NC_008435.1 40591 41127 R KEGG: rpd:RPD_0711 hypothetical protein; hypothetical protein complement(40591..41127) Rhodopseudomonas palustris BisA53 4357741 YP_778978.1 CDS RPE_0037 NC_008435.1 41127 41729 R PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: rpd:RPD_0710 metal-dependent phosphohydrolase, HD subdomain; metal dependent phosphohydrolase complement(41127..41729) Rhodopseudomonas palustris BisA53 4357742 YP_778979.1 CDS RPE_0038 NC_008435.1 41726 42937 R TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: rpd:RPD_0709 hypothetical protein; radical SAM protein complement(41726..42937) Rhodopseudomonas palustris BisA53 4357743 YP_778980.1 CDS RPE_0039 NC_008435.1 43137 43727 R KEGG: rpc:RPC_0036 hypothetical protein; hypothetical protein complement(43137..43727) Rhodopseudomonas palustris BisA53 4357744 YP_778981.1 CDS RPE_0040 NC_008435.1 44027 45001 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpd:RPD_0707 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 44027..45001 Rhodopseudomonas palustris BisA53 4357745 YP_778982.1 CDS RPE_0041 NC_008435.1 45187 46479 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rpc:RPC_0038 amine oxidase; amine oxidase 45187..46479 Rhodopseudomonas palustris BisA53 4357746 YP_778983.1 CDS RPE_0042 NC_008435.1 46533 46784 R hypothetical protein complement(46533..46784) Rhodopseudomonas palustris BisA53 4357747 YP_778984.1 CDS RPE_0043 NC_008435.1 46848 47357 D PFAM: GCN5-related N-acetyltransferase; FR47 domain protein; KEGG: rpc:RPC_0039 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 46848..47357 Rhodopseudomonas palustris BisA53 4357748 YP_778985.1 CDS RPE_0044 NC_008435.1 47450 47992 D catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 47450..47992 Rhodopseudomonas palustris BisA53 4357749 YP_778986.1 CDS RPE_0045 NC_008435.1 48027 49508 D PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rpc:RPC_0041 peptidase M20; hypothetical protein 48027..49508 Rhodopseudomonas palustris BisA53 4357750 YP_778987.1 CDS RPE_0046 NC_008435.1 49590 51290 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_4406 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(49590..51290) Rhodopseudomonas palustris BisA53 4357751 YP_778988.1 CDS RPE_0047 NC_008435.1 51616 52503 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(51616..52503) Rhodopseudomonas palustris BisA53 4357752 YP_778989.1 CDS RPE_0048 NC_008435.1 52514 52837 R PFAM: protein of unknown function DUF167; KEGG: rpc:RPC_0058 protein of unknown function DUF167; hypothetical protein complement(52514..52837) Rhodopseudomonas palustris BisA53 4357753 YP_778990.1 CDS RPE_0049 NC_008435.1 52859 53149 R PFAM: protein of unknown function YGGT; KEGG: rpd:RPD_0692 protein of unknown function YGGT; hypothetical protein complement(52859..53149) Rhodopseudomonas palustris BisA53 4357754 YP_778991.1 CDS RPE_0050 NC_008435.1 53521 53721 R KEGG: rpd:RPD_0690 protein of unknown function DUF1486; hypothetical protein complement(53521..53721) Rhodopseudomonas palustris BisA53 4358311 YP_778992.1 CDS RPE_0051 NC_008435.1 53834 54736 R hypothetical protein complement(53834..54736) Rhodopseudomonas palustris BisA53 4358312 YP_778993.1 CDS RPE_0052 NC_008435.1 54865 55350 R PFAM: protein of unknown function DUF1486; KEGG: rpd:RPD_0690 protein of unknown function DUF1486; hypothetical protein complement(54865..55350) Rhodopseudomonas palustris BisA53 4358313 YP_778994.1 CDS RPE_0053 NC_008435.1 55426 56265 R Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase complement(55426..56265) Rhodopseudomonas palustris BisA53 4358314 YP_778995.1 CDS RPE_0054 NC_008435.1 56410 57189 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpc:RPC_0055 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(56410..57189) Rhodopseudomonas palustris BisA53 4358315 YP_778996.1 CDS RPE_0055 NC_008435.1 57409 57885 R PFAM: protein of unknown function DUF1332; KEGG: rpc:RPC_0054 protein of unknown function DUF1332; hypothetical protein complement(57409..57885) Rhodopseudomonas palustris BisA53 4358316 YP_778997.1 CDS RPE_0056 NC_008435.1 58031 59440 R PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rpc:RPC_0052 adenylate/guanylate cyclase; adenylate/guanylate cyclase complement(58031..59440) Rhodopseudomonas palustris BisA53 4358317 YP_778998.1 CDS RPE_0057 NC_008435.1 59437 60843 R PFAM: cytochrome P450; KEGG: rpb:RPB_0116 cytochrome P450; cytochrome P450 complement(59437..60843) Rhodopseudomonas palustris BisA53 4358318 YP_778999.1 CDS RPE_0058 NC_008435.1 61106 62788 D PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: rpd:RPD_0685 protein of unknown function DUF894, DitE; hypothetical protein 61106..62788 Rhodopseudomonas palustris BisA53 4358319 YP_779000.1 CDS RPE_0059 NC_008435.1 62808 63023 R KEGG: rpd:RPD_0684 hypothetical protein; hypothetical protein complement(62808..63023) Rhodopseudomonas palustris BisA53 4358320 YP_779001.1 CDS RPE_0060 NC_008435.1 63403 69405 D KEGG: rpc:RPC_3080 conserved hypothetical protein, putative DNA helicase; putative DNA helicase 63403..69405 Rhodopseudomonas palustris BisA53 4358321 YP_779002.1 CDS RPE_0061 NC_008435.1 69841 70302 D PFAM: protein of unknown function DUF1311; hypothetical protein 69841..70302 Rhodopseudomonas palustris BisA53 4358322 YP_779003.1 CDS RPE_0062 NC_008435.1 70763 72496 R PFAM: HemY domain protein; KEGG: rpc:RPC_0049 HemY-like; HemY domain-containing protein complement(70763..72496) Rhodopseudomonas palustris BisA53 4358324 YP_779004.1 CDS RPE_0063 NC_008435.1 72504 73880 R KEGG: rpc:RPC_0048 hypothetical protein; hypothetical protein complement(72504..73880) Rhodopseudomonas palustris BisA53 4358325 YP_779005.1 CDS RPE_0064 NC_008435.1 73938 74684 R PFAM: Uroporphyrinogen III synthase HEM4; KEGG: rpc:RPC_0047 uroporphyrinogen III synthase HEM4; uroporphyrinogen III synthase HEM4 complement(73938..74684) Rhodopseudomonas palustris BisA53 4358326 YP_779006.1 CDS RPE_0065 NC_008435.1 74813 75982 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 74813..75982 Rhodopseudomonas palustris BisA53 4358327 YP_779007.1 CDS gpsA NC_008435.1 76221 77207 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 76221..77207 Rhodopseudomonas palustris BisA53 4357654 YP_779008.1 CDS RPE_0067 NC_008435.1 77211 77624 D PFAM: protein of unknown function DUF55; KEGG: rpd:RPD_0472 protein of unknown function DUF589; hypothetical protein 77211..77624 Rhodopseudomonas palustris BisA53 4357655 YP_779009.1 CDS RPE_0068 NC_008435.1 77843 78505 D KEGG: rpc:RPC_0043 hypothetical protein; hypothetical protein 77843..78505 Rhodopseudomonas palustris BisA53 4357656 YP_779010.1 CDS RPE_0069 NC_008435.1 79015 80961 D Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 79015..80961 Rhodopseudomonas palustris BisA53 4357657 YP_779011.1 CDS RPE_0070 NC_008435.1 82504 83118 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_1939 hypothetical protein; type 12 methyltransferase complement(82504..83118) Rhodopseudomonas palustris BisA53 4357658 YP_779012.1 CDS RPE_0071 NC_008435.1 83681 84601 R TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: rpd:RPD_1129 phenylacetic acid degradation-related protein; hypothetical protein complement(83681..84601) Rhodopseudomonas palustris BisA53 4357659 YP_779013.1 CDS RPE_0072 NC_008435.1 84598 85152 R hypothetical protein complement(84598..85152) Rhodopseudomonas palustris BisA53 4357660 YP_779014.1 CDS RPE_0073 NC_008435.1 85168 86313 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpa:RPA0995 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(85168..86313) Rhodopseudomonas palustris BisA53 4357661 YP_779015.1 CDS RPE_0074 NC_008435.1 86466 86966 R TIGRFAM: YbhB and YbcL; PFAM: PEBP family protein; KEGG: nha:Nham_3239 YbhB and YbcL; YbhB and YbcL complement(86466..86966) Rhodopseudomonas palustris BisA53 4357662 YP_779016.1 CDS RPE_0075 NC_008435.1 87406 87840 D hypothetical protein 87406..87840 Rhodopseudomonas palustris BisA53 4357663 YP_779017.1 CDS RPE_0076 NC_008435.1 87979 88896 D KEGG: bur:Bcep18194_B0441 outer membrane protein, haemagluttinin-like; hypothetical protein 87979..88896 Rhodopseudomonas palustris BisA53 4357664 YP_779018.1 CDS RPE_0077 NC_008435.1 88997 89326 D hypothetical protein 88997..89326 Rhodopseudomonas palustris BisA53 4357665 YP_779019.1 CDS RPE_0078 NC_008435.1 89385 91142 D PFAM: Carbamoyltransferase; KEGG: rpc:RPC_1437 carbamoyltransferase; carbamoyltransferase 89385..91142 Rhodopseudomonas palustris BisA53 4357666 YP_779020.1 CDS RPE_0079 NC_008435.1 91124 91801 D hypothetical protein 91124..91801 Rhodopseudomonas palustris BisA53 4357667 YP_779021.1 CDS RPE_0080 NC_008435.1 91837 92562 D KEGG: sdn:Sden_3472 hypothetical protein; hypothetical protein 91837..92562 Rhodopseudomonas palustris BisA53 4357668 YP_779022.1 CDS RPE_0081 NC_008435.1 92597 93859 D PFAM: cytochrome P450; KEGG: bld:BLi00771 cytochrome P450 enzyme; RBL02770; cytochrome P450 92597..93859 Rhodopseudomonas palustris BisA53 4357669 YP_779023.1 CDS RPE_0082 NC_008435.1 93972 94583 D TIGRFAM: methyltransferase FkbM family; KEGG: rbe:RBE_0190 hypothetical protein; FkbM family methyltransferase 93972..94583 Rhodopseudomonas palustris BisA53 4357670 YP_779024.1 CDS RPE_0083 NC_008435.1 94723 95466 D SMART: nuclease (SNase domain protein); KEGG: rpd:RPD_1131 nuclease (SNase-like); nuclease 94723..95466 Rhodopseudomonas palustris BisA53 4358050 YP_779025.1 CDS RPE_0084 NC_008435.1 95497 96387 R PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: rpb:RPB_1714 transglutaminase-like; transglutaminase domain-containing protein complement(95497..96387) Rhodopseudomonas palustris BisA53 4358051 YP_779026.1 CDS RPE_0085 NC_008435.1 96384 98822 R PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rpa:RPA3753 DUF404; hypothetical protein complement(96384..98822) Rhodopseudomonas palustris BisA53 4358052 YP_779027.1 CDS RPE_0086 NC_008435.1 98882 102190 R PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: rpc:RPC_1701 transglutaminase-like; transglutaminase domain-containing protein complement(98882..102190) Rhodopseudomonas palustris BisA53 4358053 YP_779028.1 CDS RPE_0087 NC_008435.1 102253 102564 R hypothetical protein complement(102253..102564) Rhodopseudomonas palustris BisA53 4358054 YP_779029.1 CDS RPE_0088 NC_008435.1 102832 103260 D hypothetical protein 102832..103260 Rhodopseudomonas palustris BisA53 4358055 YP_779030.1 CDS RPE_0089 NC_008435.1 103330 103572 D hypothetical protein 103330..103572 Rhodopseudomonas palustris BisA53 4358056 YP_779031.1 CDS RPE_0090 NC_008435.1 103550 105802 R KEGG: rpc:RPC_0583 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with AS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(103550..105802) Rhodopseudomonas palustris BisA53 4358057 YP_779032.1 CDS mepA NC_008435.1 106170 107120 D D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase 106170..107120 Rhodopseudomonas palustris BisA53 4358058 YP_779033.1 CDS RPE_0092 NC_008435.1 107449 108228 D KEGG: aba:Acid345_3759 hypothetical protein; hypothetical protein 107449..108228 Rhodopseudomonas palustris BisA53 4358059 YP_779034.1 CDS RPE_0093 NC_008435.1 108475 110274 R the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter complement(108475..110274) Rhodopseudomonas palustris BisA53 4358060 YP_779035.1 CDS RPE_0094 NC_008435.1 110652 111476 D TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: rpb:RPB_0058 methionine aminopeptidase, type I; methionine aminopeptidase 110652..111476 Rhodopseudomonas palustris BisA53 4358061 YP_779036.1 CDS RPE_0095 NC_008435.1 111820 112365 D hypothetical protein 111820..112365 Rhodopseudomonas palustris BisA53 4358062 YP_779037.1 CDS RPE_0096 NC_008435.1 112747 113889 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sme:SMc04289 hypothetical protein; TRAP dicarboxylate transporter 112747..113889 Rhodopseudomonas palustris BisA53 4358063 YP_779038.1 CDS RPE_0097 NC_008435.1 113994 114707 D PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: sme:SMc04287 hypothetical protein; tripartite ATP-independent periplasmic transporter DctQ 113994..114707 Rhodopseudomonas palustris BisA53 4358064 YP_779039.1 CDS RPE_0098 NC_008435.1 114704 116620 D PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sme:SMc04283 putative transmembrane protein; TRAP C4-dicarboxylate transport system permease DctM 114704..116620 Rhodopseudomonas palustris BisA53 4358065 YP_779040.1 CDS RPE_0099 NC_008435.1 116856 117449 R PFAM: Methyltransferase type 11; KEGG: tdn:Tmden_0189 methylase involved in ubiquinone/menaquinone biosynthesis-like; type 11 methyltransferase complement(116856..117449) Rhodopseudomonas palustris BisA53 4358066 YP_779041.1 CDS RPE_0100 NC_008435.1 117559 118131 R KEGG: bxe:Bxe_A3045 hypothetical protein; hypothetical protein complement(117559..118131) Rhodopseudomonas palustris BisA53 4358067 YP_779042.1 CDS RPE_0101 NC_008435.1 118156 119133 R PFAM: Ku domain protein; KEGG: rpb:RPB_0698 Ku-like protein; Ku domain-containing protein complement(118156..119133) Rhodopseudomonas palustris BisA53 4357894 YP_779043.1 CDS RPE_0102 NC_008435.1 119282 119512 D KEGG: rpc:RPC_0576 hypothetical protein; hypothetical protein 119282..119512 Rhodopseudomonas palustris BisA53 4357895 YP_779044.1 CDS radC NC_008435.1 119780 120496 D Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 119780..120496 Rhodopseudomonas palustris BisA53 4357896 YP_779045.1 CDS RPE_0104 NC_008435.1 120683 121396 R KEGG: rpd:RPD_0256 hypothetical protein; hypothetical protein complement(120683..121396) Rhodopseudomonas palustris BisA53 4357897 YP_779046.1 CDS RPE_0105 NC_008435.1 121399 122379 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rpc:RPC_0573 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase complement(121399..122379) Rhodopseudomonas palustris BisA53 4357898 YP_779047.1 CDS RPE_0106 NC_008435.1 122391 123176 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_0572 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(122391..123176) Rhodopseudomonas palustris BisA53 4357899 YP_779048.1 CDS RPE_0107 NC_008435.1 123173 123988 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_0571 ABC transporter related; ABC transporter-like protein complement(123173..123988) Rhodopseudomonas palustris BisA53 4357900 YP_779049.1 CDS RPE_0108 NC_008435.1 123997 125127 R KEGG: rpa:RPA0470 perplasmic binding protein of ABC transporter; ABC transporter periplasmic-binding protein complement(123997..125127) Rhodopseudomonas palustris BisA53 4357901 YP_779050.1 CDS RPE_0109 NC_008435.1 125254 126066 D PFAM: Creatininase; KEGG: rpb:RPB_0569 creatininase; creatininase 125254..126066 Rhodopseudomonas palustris BisA53 4357902 YP_779051.1 CDS RPE_0110 NC_008435.1 126204 126470 D KEGG: rpc:RPC_0568 hypothetical protein; hypothetical protein 126204..126470 Rhodopseudomonas palustris BisA53 4357903 YP_779052.1 CDS RPE_0111 NC_008435.1 126579 128201 R PFAM: ferredoxin-dependent glutamate synthase; KEGG: rpc:RPC_0567 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase complement(126579..128201) Rhodopseudomonas palustris BisA53 4357904 YP_779053.1 CDS RPE_0112 NC_008435.1 128313 129455 D KEGG: rpd:RPD_0263 hypothetical protein; hypothetical protein 128313..129455 Rhodopseudomonas palustris BisA53 4357905 YP_779054.1 CDS RPE_0113 NC_008435.1 129448 130764 D TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: rpd:RPD_0264 FolC bifunctional protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 129448..130764 Rhodopseudomonas palustris BisA53 4357906 YP_779055.1 CDS RPE_0114 NC_008435.1 130866 131864 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:blr0103 probable oxidoreductase; alcohol dehydrogenase 130866..131864 Rhodopseudomonas palustris BisA53 4357907 YP_779056.1 CDS RPE_0115 NC_008435.1 132134 135013 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; Methyltransferase type 11; Methyltransferase type 12; SMART: Tetratricopeptide domain protein; KEGG: nmu:Nmul_A0911 tetratricopeptide TPR_4; type 12 methyltransferase complement(132134..135013) Rhodopseudomonas palustris BisA53 4357909 YP_779057.1 CDS RPE_0116 NC_008435.1 135250 135846 D PFAM: protein of unknown function DUF937; KEGG: rpc:RPC_0555 protein of unknown function DUF937; hypothetical protein 135250..135846 Rhodopseudomonas palustris BisA53 4359784 YP_779058.1 CDS RPE_0117 NC_008435.1 135940 136227 D KEGG: rpc:RPC_0554 hypothetical protein; hypothetical protein 135940..136227 Rhodopseudomonas palustris BisA53 4359785 YP_779059.1 CDS RPE_0118 NC_008435.1 136224 137006 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility C-terminal domain; KEGG: rpc:RPC_0553 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(136224..137006) Rhodopseudomonas palustris BisA53 4359786 YP_779060.1 CDS RPE_0119 NC_008435.1 137232 138299 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpd:RPD_0270 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 137232..138299 Rhodopseudomonas palustris BisA53 4359787 YP_779061.1 CDS RPE_0120 NC_008435.1 138327 139487 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rpd:RPD_0271 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 138327..139487 Rhodopseudomonas palustris BisA53 4359788 YP_779062.1 CDS RPE_0121 NC_008435.1 139536 140339 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpc:RPC_0552 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 139536..140339 Rhodopseudomonas palustris BisA53 4359789 YP_779063.1 CDS RPE_0122 NC_008435.1 140475 141239 D KEGG: rpc:RPC_0551 nuclease (SNase-like); nuclease 140475..141239 Rhodopseudomonas palustris BisA53 4359790 YP_779064.1 CDS RPE_0123 NC_008435.1 141260 142741 D PFAM: peptidase M48, Ste24p; KEGG: rpc:RPC_0550 peptidase M48, Ste24p; peptidase M48, Ste24p 141260..142741 Rhodopseudomonas palustris BisA53 4359791 YP_779065.1 CDS RPE_0124 NC_008435.1 142833 143909 R PFAM: transcription factor CarD; KEGG: rpc:RPC_0548 transcriptional regulator, CarD family; CarD family transcriptional regulator complement(142833..143909) Rhodopseudomonas palustris BisA53 4359792 YP_779066.1 CDS RPE_0125 NC_008435.1 144127 144465 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: bja:bll0157 ferredoxin; 4Fe-4S ferredoxin complement(144127..144465) Rhodopseudomonas palustris BisA53 4359793 YP_779067.1 CDS RPE_0126 NC_008435.1 144540 144809 R PFAM: RNA-binding S4 domain protein; KEGG: rpd:RPD_0280 RNA-binding S4; RNA-binding S4 domain-containing protein complement(144540..144809) Rhodopseudomonas palustris BisA53 4359794 YP_779068.1 CDS RPE_0127 NC_008435.1 144858 148208 R PFAM: helicase domain protein; KEGG: rpc:RPC_0545 helicase-like; helicase domain-containing protein complement(144858..148208) Rhodopseudomonas palustris BisA53 4359795 YP_779069.1 CDS RPE_0128 NC_008435.1 148561 149472 R KEGG: rpc:RPC_0544 hypothetical protein; hypothetical protein complement(148561..149472) Rhodopseudomonas palustris BisA53 4359796 YP_779070.1 CDS rpmB NC_008435.1 149773 150078 D required for 70S ribosome assembly; 50S ribosomal protein L28 149773..150078 Rhodopseudomonas palustris BisA53 4359797 YP_779071.1 CDS RPE_0130 NC_008435.1 150348 153530 D KEGG: rpc:RPC_0542 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 150348..153530 Rhodopseudomonas palustris BisA53 4359798 YP_779072.1 CDS RPE_0131 NC_008435.1 153619 154686 R KEGG: rpc:RPC_0541 hypothetical protein; hypothetical protein complement(153619..154686) Rhodopseudomonas palustris BisA53 4359799 YP_779073.1 CDS RPE_0132 NC_008435.1 154945 156843 R KEGG: rpc:RPC_0540 cobalt chelatase, pCobT subunit; TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase, CobT subunit; SMART: von Willebrand factor, type A; cobalt chelatase large subunit complement(154945..156843) Rhodopseudomonas palustris BisA53 4359800 YP_779074.1 CDS RPE_0133 NC_008435.1 156840 157340 R PFAM: protein of unknown function DUF29; KEGG: rpc:RPC_0539 protein of unknown function DUF29; hypothetical protein complement(156840..157340) Rhodopseudomonas palustris BisA53 4359801 YP_779075.1 CDS RPE_0134 NC_008435.1 157353 157847 R PFAM: protein of unknown function DUF29; KEGG: rpc:RPC_0539 protein of unknown function DUF29; hypothetical protein complement(157353..157847) Rhodopseudomonas palustris BisA53 4359750 YP_779076.1 CDS RPE_0135 NC_008435.1 157974 158969 R KEGG: rpc:RPC_0538 cobalt chelatase, pCobS small subunit; TIGRFAM: cobalt chelatase, pCobS small subunit; PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; cobalt chelatase small subunit complement(157974..158969) Rhodopseudomonas palustris BisA53 4359751 YP_779077.1 CDS RPE_0136 NC_008435.1 159260 159898 D KEGG: rpc:RPC_0537 DedA family; DedA family protein 159260..159898 Rhodopseudomonas palustris BisA53 4359752 YP_779078.1 CDS RPE_0137 NC_008435.1 159941 160588 R PFAM: heat shock protein DnaJ domain protein; KEGG: rpc:RPC_0536 heat shock protein DnaJ-like; heat shock protein DnaJ domain-containing protein complement(159941..160588) Rhodopseudomonas palustris BisA53 4359753 YP_779079.1 CDS RPE_0138 NC_008435.1 160694 160966 D PFAM: BolA family protein; KEGG: rpc:RPC_0535 BolA-like protein; morphology/transcription regulator BolA family protein 160694..160966 Rhodopseudomonas palustris BisA53 4359754 YP_779080.1 CDS RPE_0139 NC_008435.1 161055 162500 R PFAM: protein of unknown function DUF949; KEGG: rpc:RPC_0527 protein of unknown function DUF949; hypothetical protein complement(161055..162500) Rhodopseudomonas palustris BisA53 4359755 YP_779081.1 CDS RPE_0140 NC_008435.1 162803 163765 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(162803..163765) Rhodopseudomonas palustris BisA53 4359756 YP_779082.1 CDS RPE_0141 NC_008435.1 163912 164892 R TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: rpc:RPC_0530 tyrosine recombinase XerD; tyrosine recombinase XerD complement(163912..164892) Rhodopseudomonas palustris BisA53 4359757 YP_779083.1 CDS RPE_0142 NC_008435.1 164902 165108 R KEGG: rpd:RPD_0295 hypothetical protein; hypothetical protein complement(164902..165108) Rhodopseudomonas palustris BisA53 4359758 YP_779084.1 CDS RPE_0143 NC_008435.1 165257 165874 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 165257..165874 Rhodopseudomonas palustris BisA53 4359759 YP_779085.1 CDS aroB NC_008435.1 165871 167016 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 165871..167016 Rhodopseudomonas palustris BisA53 4359760 YP_779086.1 CDS RPE_0145 NC_008435.1 167093 168436 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: rpa:RPA0502 probable HlyC/CorC family of transporters with 2 CBS domains; hypothetical protein 167093..168436 Rhodopseudomonas palustris BisA53 4359761 YP_779087.1 CDS RPE_0146 NC_008435.1 168646 171489 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(168646..171489) Rhodopseudomonas palustris BisA53 4359762 YP_779088.1 CDS RPE_0147 NC_008435.1 171831 172760 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rpc:RPC_0525 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 171831..172760 Rhodopseudomonas palustris BisA53 4359763 YP_779089.1 CDS argJ NC_008435.1 172964 174205 D bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 172964..174205 Rhodopseudomonas palustris BisA53 4359764 YP_779090.1 CDS RPE_0149 NC_008435.1 174333 174746 D TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: rpd:RPD_0110 NUDIX hydrolase; mutator MutT protein 174333..174746 Rhodopseudomonas palustris BisA53 4359765 YP_779091.1 CDS RPE_0150 NC_008435.1 174897 175736 R PFAM: Methyltransferase type 11; KEGG: rpc:RPC_0522 methyltransferase; type 11 methyltransferase complement(174897..175736) Rhodopseudomonas palustris BisA53 4359766 YP_779092.1 CDS RPE_0151 NC_008435.1 175782 176090 R KEGG: rpd:RPD_0108 hypothetical protein; hypothetical protein complement(175782..176090) Rhodopseudomonas palustris BisA53 4357927 YP_779093.1 CDS RPE_0152 NC_008435.1 176232 177053 D PFAM: phosphoribosyltransferase; KEGG: rpd:RPD_0107 phosphoribosyltransferase; phosphoribosyltransferase 176232..177053 Rhodopseudomonas palustris BisA53 4357928 YP_779094.1 CDS RPE_0153 NC_008435.1 177085 177360 D TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: rpc:RPC_0519 glutaredoxin, GrxC; glutaredoxin GrxC 177085..177360 Rhodopseudomonas palustris BisA53 4357929 YP_779095.1 CDS RPE_0154 NC_008435.1 177357 178247 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rpc:RPC_0518 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 177357..178247 Rhodopseudomonas palustris BisA53 4357930 YP_779096.1 CDS RPE_0155 NC_008435.1 178244 178753 D PFAM: protein of unknown function DUF1178; KEGG: rpb:RPB_0023 protein of unknown function DUF1178; hypothetical protein 178244..178753 Rhodopseudomonas palustris BisA53 4357931 YP_779097.1 CDS RPE_0156 NC_008435.1 178967 179866 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: rpc:RPC_0516 protein of unknown function DUF6, transmembrane; hypothetical protein complement(178967..179866) Rhodopseudomonas palustris BisA53 4357932 YP_779098.1 CDS RPE_0157 NC_008435.1 180211 180972 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(180211..180972) Rhodopseudomonas palustris BisA53 4357933 YP_779099.1 CDS RPE_0158 NC_008435.1 181302 182555 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 181302..182555 Rhodopseudomonas palustris BisA53 4357934 YP_779100.1 CDS RPE_0159 NC_008435.1 182877 185144 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: rpc:RPC_0513 PTSINtr with GAF domain, PtsP; phosphoenolpyruvate-protein phosphotransferase PtsP 182877..185144 Rhodopseudomonas palustris BisA53 4357935 YP_779101.1 CDS prfA NC_008435.1 185202 186281 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 185202..186281 Rhodopseudomonas palustris BisA53 4357936 YP_779102.1 CDS RPE_0161 NC_008435.1 186382 187323 D TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 11; KEGG: rpc:RPC_0511 modification methylase, HemK family; HemK family modification methylase 186382..187323 Rhodopseudomonas palustris BisA53 4357937 YP_779103.1 CDS RPE_0162 NC_008435.1 187801 188556 D KEGG: rpc:RPC_0510 hypothetical protein; hypothetical protein 187801..188556 Rhodopseudomonas palustris BisA53 4357938 YP_779104.1 CDS RPE_0163 NC_008435.1 188654 189421 R PFAM: Methyltransferase type 11; KEGG: rpc:RPC_0509 methyltransferase type 11; type 11 methyltransferase complement(188654..189421) Rhodopseudomonas palustris BisA53 4357939 YP_779105.1 CDS RPE_0164 NC_008435.1 189572 190339 D PFAM: beta-lactamase domain protein; KEGG: rpc:RPC_0508 hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase 189572..190339 Rhodopseudomonas palustris BisA53 4357940 YP_779106.1 CDS RPE_0165 NC_008435.1 190336 190779 D PFAM: protein of unknown function DUF985; KEGG: rpc:RPC_0507 protein of unknown function DUF985; hypothetical protein 190336..190779 Rhodopseudomonas palustris BisA53 4357941 YP_779107.1 CDS RPE_0166 NC_008435.1 190950 191825 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: rpc:RPC_0506 protein of unknown function DUF6, transmembrane; hypothetical protein complement(190950..191825) Rhodopseudomonas palustris BisA53 4357942 YP_779108.1 CDS RPE_0167 NC_008435.1 191854 192579 R TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Acetoacetyl-CoA reductase; KEGG: rpc:RPC_0505 acetoacetyl-CoA reductase; acetoacetyl-CoA reductase complement(191854..192579) Rhodopseudomonas palustris BisA53 4357943 YP_779109.1 CDS RPE_0168 NC_008435.1 192841 194019 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase complement(192841..194019) Rhodopseudomonas palustris BisA53 4357944 YP_779110.1 CDS RPE_0169 NC_008435.1 194338 194943 D TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: rpc:RPC_0503 polyhydroxyalkanoate synthesis repressor PhaR; polyhydroxyalkanoate synthesis repressor PhaR 194338..194943 Rhodopseudomonas palustris BisA53 4357910 YP_779111.1 CDS RPE_0171 NC_008435.1 195524 197212 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rpc:RPC_0502 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains); diguanylate cyclase/phosphodiesterase complement(195524..197212) Rhodopseudomonas palustris BisA53 4357912 YP_779112.1 CDS RPE_0172 NC_008435.1 197467 197751 D KEGG: rpc:RPC_0501 hypothetical protein; hypothetical protein 197467..197751 Rhodopseudomonas palustris BisA53 4357913 YP_779113.1 CDS RPE_0173 NC_008435.1 197754 198335 R KEGG: rpc:RPC_0500 hypothetical protein; hypothetical protein complement(197754..198335) Rhodopseudomonas palustris BisA53 4357914 YP_779114.1 CDS rpmF NC_008435.1 198548 198730 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(198548..198730) Rhodopseudomonas palustris BisA53 4357915 YP_779115.1 CDS mtgA NC_008435.1 198882 199601 R glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase complement(198882..199601) Rhodopseudomonas palustris BisA53 4357916 YP_779116.1 CDS RPE_0176 NC_008435.1 199747 200673 D PFAM: Polyprenyl synthetase; KEGG: rpc:RPC_0497 polyprenyl synthetase; polyprenyl synthetase 199747..200673 Rhodopseudomonas palustris BisA53 4357917 YP_779117.1 CDS RPE_0177 NC_008435.1 200680 201360 D PFAM: protein of unknown function DUF1345; KEGG: rpc:RPC_0496 protein of unknown function DUF1345; hypothetical protein 200680..201360 Rhodopseudomonas palustris BisA53 4357918 YP_779118.1 CDS RPE_0178 NC_008435.1 201438 201716 D KEGG: rpc:RPC_0495 hypothetical protein; hypothetical protein 201438..201716 Rhodopseudomonas palustris BisA53 4357919 YP_779119.1 CDS RPE_0179 NC_008435.1 201756 202196 R PFAM: BLUF domain protein; KEGG: rpc:RPC_0494 BLUF; BLUF domain-containing protein complement(201756..202196) Rhodopseudomonas palustris BisA53 4357920 YP_779120.1 CDS RPE_0180 NC_008435.1 202216 203907 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rpc:RPC_0493 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains); diguanylate cyclase/phosphodiesterase complement(202216..203907) Rhodopseudomonas palustris BisA53 4357921 YP_779121.1 CDS RPE_0181 NC_008435.1 204154 205761 D TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: rpc:RPC_0492 Na+/H+ antiporter; Na+/H+ antiporter 204154..205761 Rhodopseudomonas palustris BisA53 4357922 YP_779122.1 CDS RPE_0182 NC_008435.1 206110 206388 D PFAM: plasmid stabilization system; KEGG: rpc:RPC_4130 plasmid stabilization system; plasmid stabilization system protein 206110..206388 Rhodopseudomonas palustris BisA53 4357923 YP_779123.1 CDS ispG NC_008435.1 206426 207706 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(206426..207706) Rhodopseudomonas palustris BisA53 4357924 YP_779124.1 CDS RPE_0184 NC_008435.1 207921 208178 D KEGG: nha:Nham_4317 hypothetical protein; hypothetical protein 207921..208178 Rhodopseudomonas palustris BisA53 4357925 YP_779125.1 CDS RPE_0185 NC_008435.1 208301 208837 D KEGG: pol:Bpro_5035 hypothetical protein; hypothetical protein 208301..208837 Rhodopseudomonas palustris BisA53 4357926 YP_779126.1 CDS RPE_0186 NC_008435.1 208842 209804 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: rpc:RPC_0490 protein of unknown function DUF6, transmembrane; hypothetical protein complement(208842..209804) Rhodopseudomonas palustris BisA53 4358487 YP_779127.1 CDS RPE_0187 NC_008435.1 209833 210336 R PFAM: ferric-uptake regulator; KEGG: rpc:RPC_0489 ferric uptake regulator, FUR family; ferric uptake regulator family protein complement(209833..210336) Rhodopseudomonas palustris BisA53 4358488 YP_779128.1 CDS RPE_0188 NC_008435.1 210507 210989 D PFAM: regulatory protein, MarR; KEGG: rpc:RPC_0488 transcriptional regulator, MarR family; MarR family transcriptional regulator 210507..210989 Rhodopseudomonas palustris BisA53 4358489 YP_779129.1 CDS RPE_0189 NC_008435.1 210982 212139 D PFAM: biotin/lipoyl attachment domain-containing protein; secretion protein HlyD family protein; KEGG: rpc:RPC_0487 secretion protein HlyD; secretion protein HlyD family protein 210982..212139 Rhodopseudomonas palustris BisA53 4358490 YP_779130.1 CDS RPE_0190 NC_008435.1 212715 214274 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rpc:RPC_0486 drug resistance transporter EmrB/QacA subfamily; EmrB/QacA family drug resistance transporter 212715..214274 Rhodopseudomonas palustris BisA53 4358491 YP_779131.1 CDS RPE_0191 NC_008435.1 214374 215111 R KEGG: rpc:RPC_0485 twin-arginine translocation pathway signal; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: manganese and iron superoxide dismutase; superoxide dismutase complement(214374..215111) Rhodopseudomonas palustris BisA53 4358492 YP_779132.1 CDS RPE_0192 NC_008435.1 215295 217460 R KEGG: rpc:RPC_0484 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase complement(215295..217460) Rhodopseudomonas palustris BisA53 4358493 YP_779133.1 CDS rpsO NC_008435.1 217823 218092 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(217823..218092) Rhodopseudomonas palustris BisA53 4358494 YP_779134.1 CDS truB NC_008435.1 218095 219207 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(218095..219207) Rhodopseudomonas palustris BisA53 4358495 YP_779135.1 CDS rbfA NC_008435.1 219204 219620 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(219204..219620) Rhodopseudomonas palustris BisA53 4358496 YP_779136.1 CDS infB NC_008435.1 219815 222496 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(219815..222496) Rhodopseudomonas palustris BisA53 4358497 YP_779137.1 CDS RPE_0197 NC_008435.1 222489 223235 R PFAM: protein of unknown function DUF448; KEGG: rpc:RPC_0479 protein of unknown function DUF448; hypothetical protein complement(222489..223235) Rhodopseudomonas palustris BisA53 4358498 YP_779138.1 CDS nusA NC_008435.1 223251 224867 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(223251..224867) Rhodopseudomonas palustris BisA53 4358499 YP_779139.1 CDS RPE_0199 NC_008435.1 224871 225689 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(224871..225689) Rhodopseudomonas palustris BisA53 4358500 YP_779140.1 CDS trmB NC_008435.1 225965 226717 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(225965..226717) Rhodopseudomonas palustris BisA53 4358501 YP_779141.1 CDS RPE_0201 NC_008435.1 226835 227257 R PFAM: helix-turn-helix domain protein; KEGG: rpc:RPC_0473 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(226835..227257) Rhodopseudomonas palustris BisA53 4358502 YP_779142.1 CDS lnt NC_008435.1 227467 229080 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(227467..229080) Rhodopseudomonas palustris BisA53 4358503 YP_779143.1 CDS RPE_0203 NC_008435.1 229077 230189 R PFAM: CBS domain containing protein; transporter-associated region; KEGG: bja:bll0792 magnesium and cobalt efflux protein; hypothetical protein complement(229077..230189) Rhodopseudomonas palustris BisA53 4358504 YP_779144.1 CDS RPE_0204 NC_008435.1 230192 230710 R PFAM: protein of unknown function UPF0054; KEGG: rpc:RPC_0470 protein of unknown function UPF0054; hypothetical protein complement(230192..230710) Rhodopseudomonas palustris BisA53 4359889 YP_779145.1 CDS RPE_0205 NC_008435.1 230778 231833 R PFAM: PhoH family protein; KH, type 1, domain protein; KEGG: rpc:RPC_0469 PhoH-like protein; PhoH family protein complement(230778..231833) Rhodopseudomonas palustris BisA53 4359890 YP_779146.1 CDS RPE_0206 NC_008435.1 231838 233235 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(231838..233235) Rhodopseudomonas palustris BisA53 4359891 YP_779147.1 CDS RPE_0207 NC_008435.1 233339 234013 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpc:RPC_0467 HAD-superfamily hydrolase subfamily IA, variant 3; HAD family hydrolase complement(233339..234013) Rhodopseudomonas palustris BisA53 4359892 YP_779148.1 CDS RPE_0208 NC_008435.1 234010 234447 R PFAM: ferric-uptake regulator; KEGG: rpc:RPC_0466 ferric uptake regulator, FUR family; ferric uptake regulator family protein complement(234010..234447) Rhodopseudomonas palustris BisA53 4359893 YP_779149.1 CDS RPE_0209 NC_008435.1 234516 235001 R TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: rpc:RPC_0465 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase complement(234516..235001) Rhodopseudomonas palustris BisA53 4359894 YP_779150.1 CDS RPE_0210 NC_008435.1 235039 235734 R PFAM: peptidase M22, glycoprotease; KEGG: rpc:RPC_0464 peptidase M22, glycoprotease; peptidase M22, glycoprotease complement(235039..235734) Rhodopseudomonas palustris BisA53 4359895 YP_779151.1 CDS RPE_0211 NC_008435.1 235856 236422 R PFAM: nitrogen-fixing NifU domain protein; KEGG: rpc:RPC_0463 nitrogen-fixing NifU-like; NifU domain-containing protein complement(235856..236422) Rhodopseudomonas palustris BisA53 4359896 YP_779152.1 CDS RPE_0212 NC_008435.1 236517 238148 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_0461 ABC transporter related; ABC transporter-like protein complement(236517..238148) Rhodopseudomonas palustris BisA53 4359897 YP_779153.1 CDS RPE_0213 NC_008435.1 238293 238835 R PFAM: UspA domain protein; KEGG: rpc:RPC_0460 hypothetical protein; UspA domain-containing protein complement(238293..238835) Rhodopseudomonas palustris BisA53 4359898 YP_779154.1 CDS RPE_0214 NC_008435.1 239214 239459 D hypothetical protein 239214..239459 Rhodopseudomonas palustris BisA53 4359899 YP_779155.1 CDS RPE_0215 NC_008435.1 239440 239865 D hypothetical protein 239440..239865 Rhodopseudomonas palustris BisA53 4359900 YP_779156.1 CDS RPE_0216 NC_008435.1 239915 240964 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(239915..240964) Rhodopseudomonas palustris BisA53 4359901 YP_779157.1 CDS RPE_0217 NC_008435.1 241034 242590 R TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: rpc:RPC_0458 integral membrane protein MviN; integral membrane protein MviN complement(241034..242590) Rhodopseudomonas palustris BisA53 4359902 YP_779158.1 CDS RPE_0218 NC_008435.1 242731 243732 D PFAM: PfkB domain protein; KEGG: rpd:RPD_0251 PfkB; ribokinase-like domain-containing protein 242731..243732 Rhodopseudomonas palustris BisA53 4359903 YP_779159.1 CDS RPE_0220 NC_008435.1 245172 246374 R PFAM: beta-lactamase; KEGG: rpc:RPC_0456 beta-lactamase; beta-lactamase complement(245172..246374) Rhodopseudomonas palustris BisA53 4359905 YP_779160.1 CDS RPE_0221 NC_008435.1 246526 246858 D KEGG: rpc:RPC_0455 hypothetical protein; hypothetical protein 246526..246858 Rhodopseudomonas palustris BisA53 4357980 YP_779161.1 CDS RPE_0222 NC_008435.1 246994 248487 D KEGG: rpd:RPD_0255 succinic semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; succinate-semialdehyde dehydrogenase 246994..248487 Rhodopseudomonas palustris BisA53 4357981 YP_779162.1 CDS RPE_0223 NC_008435.1 248539 249156 R PFAM: protein of unknown function DUF204; KEGG: pst:PSPTO3755 hypothetical protein; hypothetical protein complement(248539..249156) Rhodopseudomonas palustris BisA53 4357982 YP_779163.1 CDS RPE_0224 NC_008435.1 249739 251943 D KEGG: rpc:RPC_0453 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; 1A family penicillin-binding protein 249739..251943 Rhodopseudomonas palustris BisA53 4357983 YP_779164.1 CDS RPE_0225 NC_008435.1 252195 253031 R PFAM: protein of unknown function DUF45; KEGG: rpb:RPB_0064 protein of unknown function DUF45; hypothetical protein complement(252195..253031) Rhodopseudomonas palustris BisA53 4357984 YP_779165.1 CDS RPE_0226 NC_008435.1 253256 254584 R TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: rpc:RPC_0356 polyhydroxyalkanoate depolymerase, intracellular; polyhydroxyalkanoate depolymerase complement(253256..254584) Rhodopseudomonas palustris BisA53 4357985 YP_779166.1 CDS RPE_0227 NC_008435.1 254702 255511 R PFAM: ABC-2 type transporter; KEGG: rpc:RPC_0357 ABC-2; hypothetical protein complement(254702..255511) Rhodopseudomonas palustris BisA53 4357986 YP_779167.1 CDS RPE_0228 NC_008435.1 255517 256323 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_0358 ABC transporter related; ABC transporter-like protein complement(255517..256323) Rhodopseudomonas palustris BisA53 4357987 YP_779168.1 CDS RPE_0229 NC_008435.1 256464 257798 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_0359 periplasmic sensor signal transduction histidine kinase; sensor signal transduction histidine kinase 256464..257798 Rhodopseudomonas palustris BisA53 4357988 YP_779169.1 CDS RPE_0230 NC_008435.1 257907 258461 D PFAM: response regulator receiver; KEGG: rpa:RPA0571 two-component transcriptional regulator RegR, fis family; response regulator receiver protein 257907..258461 Rhodopseudomonas palustris BisA53 4357989 YP_779170.1 CDS RPE_0231 NC_008435.1 258666 259199 R PFAM: protein of unknown function DUF1052; KEGG: rpc:RPC_0375 protein of unknown function DUF1052; hypothetical protein complement(258666..259199) Rhodopseudomonas palustris BisA53 4357990 YP_779171.1 CDS RPE_0232 NC_008435.1 259299 260417 D SMART: von Willebrand factor, type A; KEGG: rpa:RPA0569 hypothetical protein; von Willebrand factor, type A 259299..260417 Rhodopseudomonas palustris BisA53 4357991 YP_779172.1 CDS RPE_0233 NC_008435.1 260508 261236 D PFAM: beta-lactamase domain protein; KEGG: rpb:RPB_0715 beta-lactamase-like; beta-lactamase domain-containing protein 260508..261236 Rhodopseudomonas palustris BisA53 4357992 YP_779173.1 CDS RPE_0234 NC_008435.1 261412 261828 R PFAM: protein of unknown function DUF1236; KEGG: rpc:RPC_0372 hypothetical protein; hypothetical protein complement(261412..261828) Rhodopseudomonas palustris BisA53 4357993 YP_779174.1 CDS RPE_0235 NC_008435.1 261919 264417 R KEGG: rpb:RPB_0712 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase complement(261919..264417) Rhodopseudomonas palustris BisA53 4357994 YP_779175.1 CDS RPE_0236 NC_008435.1 264541 265704 R TIGRFAM: esterase, PHB depolymerase family; KEGG: rpc:RPC_0371 esterase, PHB depolymerase; PHB depolymerase family esterase complement(264541..265704) Rhodopseudomonas palustris BisA53 4357995 YP_779176.1 CDS RPE_0237 NC_008435.1 265857 267275 R TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: rpd:RPD_0139 chromate transporter; chromate transporter complement(265857..267275) Rhodopseudomonas palustris BisA53 4357996 YP_779177.1 CDS RPE_0238 NC_008435.1 267920 268381 D KEGG: rpc:RPC_0370 hypothetical protein; hypothetical protein 267920..268381 Rhodopseudomonas palustris BisA53 4357997 YP_779178.1 CDS RPE_0239 NC_008435.1 268388 269560 R KEGG: rpc:RPC_0368 hypothetical protein; hypothetical protein complement(268388..269560) Rhodopseudomonas palustris BisA53 4359019 YP_779179.1 CDS RPE_0240 NC_008435.1 269651 271018 D PFAM: MmgE/PrpD family protein; KEGG: rpd:RPD_0146 MmgE/PrpD; MmgE/PrpD family protein 269651..271018 Rhodopseudomonas palustris BisA53 4359020 YP_779180.1 CDS RPE_0241 NC_008435.1 271122 271787 D PFAM: PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: rpa:RPA0561 hypothetical protein; putative PAS/PAC sensor protein 271122..271787 Rhodopseudomonas palustris BisA53 4359021 YP_779181.1 CDS RPE_0242 NC_008435.1 271823 273193 R PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rpc:RPC_0365 peptidoglycan-binding domain 1; peptidoglycan binding domain-containing protein complement(271823..273193) Rhodopseudomonas palustris BisA53 4359022 YP_779182.1 CDS RPE_0243 NC_008435.1 273321 274121 D PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: rpc:RPC_0364 UBA/ThiF-type NAD/FAD binding fold; UBA/THIF-type NAD/FAD binding protein 273321..274121 Rhodopseudomonas palustris BisA53 4359023 YP_779183.1 CDS RPE_0244 NC_008435.1 274384 275385 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rpa:RPA0422 2-hydroxyacid dehydrogenase; glyoxylate reductase complement(274384..275385) Rhodopseudomonas palustris BisA53 4359024 YP_779184.1 CDS RPE_0245 NC_008435.1 275775 276302 D PFAM: protein of unknown function DUF1058; KEGG: rpc:RPC_0353 protein of unknown function DUF1058; hypothetical protein 275775..276302 Rhodopseudomonas palustris BisA53 4359025 YP_779185.1 CDS RPE_0246 NC_008435.1 276491 279211 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(276491..279211) Rhodopseudomonas palustris BisA53 4359026 YP_779186.1 CDS RPE_0247 NC_008435.1 279635 281911 D hypothetical protein 279635..281911 Rhodopseudomonas palustris BisA53 4359027 YP_779187.1 CDS RPE_0248 NC_008435.1 282057 283265 D catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase 282057..283265 Rhodopseudomonas palustris BisA53 4359028 YP_779188.1 CDS RPE_0249 NC_008435.1 283332 284429 R PFAM: transposase, IS4 family protein; KEGG: rpc:RPC_2070 transposase, IS4; transposase, IS4 family protein complement(283332..284429) Rhodopseudomonas palustris BisA53 4359029 YP_779189.1 CDS RPE_0250 NC_008435.1 284714 285814 D PFAM: transposase, IS4 family protein; KEGG: rpc:RPC_2070 transposase, IS4; transposase, IS4 family protein 284714..285814 Rhodopseudomonas palustris BisA53 4359030 YP_779190.1 CDS RPE_0251 NC_008435.1 286058 287566 D PFAM: Carboxylesterase, type B; KEGG: xac:XAC1213 carboxylesterase, type B; carboxylesterase 286058..287566 Rhodopseudomonas palustris BisA53 4359031 YP_779191.1 CDS RPE_0252 NC_008435.1 287832 288791 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_0362 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(287832..288791) Rhodopseudomonas palustris BisA53 4359032 YP_779192.1 CDS RPE_0253 NC_008435.1 289003 291195 D KEGG: rpa:RPA0429 catalase/peroxidase; TIGRFAM: catalase/peroxidase HPI; PFAM: heme peroxidase; catalase/peroxidase HPI 289003..291195 Rhodopseudomonas palustris BisA53 4359033 YP_779193.1 CDS RPE_0254 NC_008435.1 291970 292575 D PFAM: Glutathione S-transferase, N-terminal domain; KEGG: nha:Nham_0039 glutathione S-transferase-like; glutathione S-transferase 291970..292575 Rhodopseudomonas palustris BisA53 4359034 YP_779194.1 CDS RPE_0255 NC_008435.1 292757 293602 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase complement(292757..293602) Rhodopseudomonas palustris BisA53 4359035 YP_779195.1 CDS RPE_0256 NC_008435.1 293791 295017 R FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(293791..295017) Rhodopseudomonas palustris BisA53 4358328 YP_779196.1 CDS RPE_0257 NC_008435.1 295096 295626 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase complement(295096..295626) Rhodopseudomonas palustris BisA53 4358329 YP_779197.1 CDS RPE_0258 NC_008435.1 295959 296450 D PFAM: ferric-uptake regulator; KEGG: rpc:RPC_0350 ferric uptake regulator, FUR family; ferric uptake regulator family protein 295959..296450 Rhodopseudomonas palustris BisA53 4358330 YP_779198.1 CDS RPE_0259 NC_008435.1 296467 296976 R PFAM: OsmC family protein; KEGG: bja:blr0920 hypothetical protein; OsmC family protein complement(296467..296976) Rhodopseudomonas palustris BisA53 4358331 YP_779199.1 CDS RPE_0260 NC_008435.1 297238 300033 D catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 297238..300033 Rhodopseudomonas palustris BisA53 4358332 YP_779200.1 CDS RPE_0261 NC_008435.1 300089 302824 R PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpb:RPB_0035 multi-sensor hybrid histidine kinase; multi-sensor hybrid histidine kinase complement(300089..302824) Rhodopseudomonas palustris BisA53 4358333 YP_779201.1 CDS RPE_0262 NC_008435.1 302936 303364 R KEGG: rpb:RPB_0036 hypothetical protein; hypothetical protein complement(302936..303364) Rhodopseudomonas palustris BisA53 4358334 YP_779202.1 CDS RPE_0263 NC_008435.1 303442 303804 D PFAM: protein of unknown function DUF1304; KEGG: rpb:RPB_0037 protein of unknown function DUF1304; hypothetical protein 303442..303804 Rhodopseudomonas palustris BisA53 4358335 YP_779203.1 CDS RPE_0264 NC_008435.1 303921 305144 D KEGG: bja:bll0912 hypothetical protein; hypothetical protein 303921..305144 Rhodopseudomonas palustris BisA53 4358336 YP_779204.1 CDS RPE_0265 NC_008435.1 305330 305575 R KEGG: rpc:RPC_0343 hypothetical protein; hypothetical protein complement(305330..305575) Rhodopseudomonas palustris BisA53 4358337 YP_779205.1 CDS proA NC_008435.1 305745 307037 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 305745..307037 Rhodopseudomonas palustris BisA53 4358338 YP_779206.1 CDS nadD NC_008435.1 307068 307718 D transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 307068..307718 Rhodopseudomonas palustris BisA53 4358339 YP_779207.1 CDS RPE_0268 NC_008435.1 307874 308236 D TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: rpc:RPC_0163 iojap-related protein; iojap family protein 307874..308236 Rhodopseudomonas palustris BisA53 4358340 YP_779208.1 CDS RPE_0269 NC_008435.1 308286 308768 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 308286..308768 Rhodopseudomonas palustris BisA53 4358341 YP_779209.1 CDS RPE_0270 NC_008435.1 308765 310120 D PFAM: peptidase M23B; KEGG: rpc:RPC_0165 peptidase M23B; peptidase M23B 308765..310120 Rhodopseudomonas palustris BisA53 4358342 YP_779210.1 CDS RPE_0271 NC_008435.1 310117 311490 D KEGG: rpd:RPD_0566 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 310117..311490 Rhodopseudomonas palustris BisA53 4358343 YP_779211.1 CDS RPE_0272 NC_008435.1 311652 312863 D PFAM: protein of unknown function DUF610, YibQ; KEGG: rpc:RPC_0167 protein of unknown function DUF610, YibQ; hypothetical protein 311652..312863 Rhodopseudomonas palustris BisA53 4358344 YP_779212.1 CDS RPE_0273 NC_008435.1 312928 313458 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 312928..313458 Rhodopseudomonas palustris BisA53 4358345 YP_779213.1 CDS RPE_0274 NC_008435.1 313455 314567 R KEGG: rpc:RPC_0169 hypothetical protein; hypothetical protein complement(313455..314567) Rhodopseudomonas palustris BisA53 4358765 YP_779214.1 CDS RPE_0275 NC_008435.1 314740 315687 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: rpd:RPD_0562 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 314740..315687 Rhodopseudomonas palustris BisA53 4358766 YP_779215.1 CDS RPE_0276 NC_008435.1 315815 316345 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 315815..316345 Rhodopseudomonas palustris BisA53 4358767 YP_779216.1 CDS RPE_0277 NC_008435.1 316349 317326 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(316349..317326) Rhodopseudomonas palustris BisA53 4358768 YP_779217.1 CDS RPE_0278 NC_008435.1 317642 318445 R SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: rpc:RPC_0172 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(317642..318445) Rhodopseudomonas palustris BisA53 4358769 YP_779218.1 CDS atpC NC_008435.1 318549 318956 R produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit epsilon complement(318549..318956) Rhodopseudomonas palustris BisA53 4358770 YP_779219.1 CDS RPE_0280 NC_008435.1 319051 320481 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(319051..320481) Rhodopseudomonas palustris BisA53 4358771 YP_779220.1 CDS RPE_0281 NC_008435.1 320554 321432 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(320554..321432) Rhodopseudomonas palustris BisA53 4358772 YP_779221.1 CDS RPE_0282 NC_008435.1 321577 323109 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(321577..323109) Rhodopseudomonas palustris BisA53 4358773 YP_779222.1 CDS RPE_0283 NC_008435.1 323109 323669 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(323109..323669) Rhodopseudomonas palustris BisA53 4358774 YP_779223.1 CDS RPE_0284 NC_008435.1 323850 324146 D hypothetical protein 323850..324146 Rhodopseudomonas palustris BisA53 4358775 YP_779224.1 CDS RPE_0285 NC_008435.1 324343 324822 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: rpc:RPC_0178 rare lipoprotein A; rare lipoprotein A 324343..324822 Rhodopseudomonas palustris BisA53 4358776 YP_779225.1 CDS RPE_0286 NC_008435.1 324964 327162 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(324964..327162) Rhodopseudomonas palustris BisA53 4358777 YP_779226.1 CDS xerC NC_008435.1 327268 328296 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 327268..328296 Rhodopseudomonas palustris BisA53 4358778 YP_779227.1 CDS RPE_0288 NC_008435.1 328421 329014 D KEGG: rpa:RPA0183 hypothetical protein; hypothetical protein 328421..329014 Rhodopseudomonas palustris BisA53 4358779 YP_779228.1 CDS RPE_0289 NC_008435.1 329047 329589 R KEGG: rpa:RPA0184 hypothetical protein; hypothetical protein complement(329047..329589) Rhodopseudomonas palustris BisA53 4358780 YP_779229.1 CDS RPE_0290 NC_008435.1 329732 331135 R Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(329732..331135) Rhodopseudomonas palustris BisA53 4358781 YP_779230.1 CDS RPE_0291 NC_008435.1 331137 331412 R hypothetical protein complement(331137..331412) Rhodopseudomonas palustris BisA53 4359592 YP_779231.1 CDS RPE_0292 NC_008435.1 331458 332204 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: rpb:RPB_0275 short-chain dehydrogenase/reductase; short-chain dehydrogenase/reductase SDR complement(331458..332204) Rhodopseudomonas palustris BisA53 4359593 YP_779232.1 CDS RPE_0293 NC_008435.1 332247 332657 R KEGG: rpc:RPC_0187 hypothetical protein; hypothetical protein complement(332247..332657) Rhodopseudomonas palustris BisA53 4359594 YP_779233.1 CDS RPE_0294 NC_008435.1 332728 333039 R KEGG: rpd:RPD_0549 hypothetical protein; hypothetical protein complement(332728..333039) Rhodopseudomonas palustris BisA53 4359595 YP_779234.1 CDS RPE_0295 NC_008435.1 333036 333293 R KEGG: rpc:RPC_0185 hypothetical protein; hypothetical protein complement(333036..333293) Rhodopseudomonas palustris BisA53 4359596 YP_779235.1 CDS RPE_0296 NC_008435.1 333307 334614 R component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase complement(333307..334614) Rhodopseudomonas palustris BisA53 4359597 YP_779236.1 CDS sucA NC_008435.1 334720 337677 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(334720..337677) Rhodopseudomonas palustris BisA53 4359598 YP_779237.1 CDS RPE_0298 NC_008435.1 337806 338690 R TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: rpb:RPB_0279 succinyl-CoA synthetase, alpha subunit; succinyl-CoA synthetase subunit alpha complement(337806..338690) Rhodopseudomonas palustris BisA53 4359599 YP_779238.1 CDS sucC NC_008435.1 338691 339890 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(338691..339890) Rhodopseudomonas palustris BisA53 4359600 YP_779239.1 CDS RPE_0300 NC_008435.1 339947 340915 R Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase complement(339947..340915) Rhodopseudomonas palustris BisA53 4359601 YP_779240.1 CDS RPE_0301 NC_008435.1 341052 342239 R PFAM: AFG1-family ATPase; KEGG: rpc:RPC_0195 AFG1-like ATPase; AFG1 family ATPase complement(341052..342239) Rhodopseudomonas palustris BisA53 4359602 YP_779241.1 CDS RPE_0302 NC_008435.1 342496 343032 R TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: rpc:RPC_0196 2',5' RNA ligase; 2',5' RNA ligase complement(342496..343032) Rhodopseudomonas palustris BisA53 4359603 YP_779242.1 CDS RPE_0303 NC_008435.1 343166 343822 R PFAM: lipolytic enzyme, G-D-S-L family; KEGG: rpc:RPC_0197 lipolytic enzyme, G-D-S-L; GDSL family lipase complement(343166..343822) Rhodopseudomonas palustris BisA53 4359604 YP_779243.1 CDS RPE_0304 NC_008435.1 343872 344609 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_0198 ABC transporter related; ABC transporter-like protein 343872..344609 Rhodopseudomonas palustris BisA53 4359605 YP_779244.1 CDS RPE_0305 NC_008435.1 344722 347355 D PFAM: protein of unknown function DUF214; KEGG: rpc:RPC_0199 protein of unknown function DUF214; hypothetical protein 344722..347355 Rhodopseudomonas palustris BisA53 4359606 YP_779245.1 CDS RPE_0306 NC_008435.1 347658 348473 D PFAM: protein of unknown function UPF0005; KEGG: rpc:RPC_0200 protein of unknown function UPF0005; hypothetical protein 347658..348473 Rhodopseudomonas palustris BisA53 4359607 YP_779246.1 CDS RPE_0307 NC_008435.1 348662 349201 D PFAM: GCN5-related N-acetyltransferase; KEGG: rpd:RPD_0528 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 348662..349201 Rhodopseudomonas palustris BisA53 4359608 YP_779247.1 CDS RPE_0308 NC_008435.1 349372 349746 R KEGG: nha:Nham_0406 hypothetical protein; hypothetical protein complement(349372..349746) Rhodopseudomonas palustris BisA53 4359609 YP_779248.1 CDS RPE_0309 NC_008435.1 350148 350975 R PFAM: protein of unknown function DUF1223; KEGG: rpc:RPC_0203 protein of unknown function DUF1223; hypothetical protein complement(350148..350975) Rhodopseudomonas palustris BisA53 4357688 YP_779249.1 CDS RPE_0310 NC_008435.1 351224 353941 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(351224..353941) Rhodopseudomonas palustris BisA53 4357689 YP_779250.1 CDS RPE_0311 NC_008435.1 354168 354770 D ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 354168..354770 Rhodopseudomonas palustris BisA53 4357690 YP_779251.1 CDS RPE_0312 NC_008435.1 355045 355713 D TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: rpc:RPC_0206 heme exporter protein CcmB; heme exporter protein CcmB 355045..355713 Rhodopseudomonas palustris BisA53 4357691 YP_779252.1 CDS RPE_0313 NC_008435.1 355809 356561 D TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: rpc:RPC_0207 heme exporter protein CcmC; heme exporter protein CcmC 355809..356561 Rhodopseudomonas palustris BisA53 4357692 YP_779253.1 CDS RPE_0314 NC_008435.1 356561 356740 D PFAM: Heme exporter protein D (CcmD); KEGG: rpc:RPC_0208 heme exporter protein D (CcmD); heme exporter protein CcmD 356561..356740 Rhodopseudomonas palustris BisA53 4357693 YP_779254.1 CDS RPE_0315 NC_008435.1 356737 357333 D TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: rpc:RPC_0209 periplasmic protein thiol; periplasmic protein thiol 356737..357333 Rhodopseudomonas palustris BisA53 4357694 YP_779255.1 CDS RPE_0316 NC_008435.1 357461 357826 D KEGG: rpc:RPC_0210 hypothetical protein; hypothetical protein 357461..357826 Rhodopseudomonas palustris BisA53 4357695 YP_779256.1 CDS RPE_0317 NC_008435.1 358005 358628 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(358005..358628) Rhodopseudomonas palustris BisA53 4357696 YP_779257.1 CDS RPE_0318 NC_008435.1 358637 359587 R KEGG: rpc:RPC_0212 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: AAA ATPase; signal recognition particle-docking protein FtsY complement(358637..359587) Rhodopseudomonas palustris BisA53 4357697 YP_779258.1 CDS RPE_0319 NC_008435.1 359616 360452 D PFAM: pseudouridine synthase; KEGG: rpd:RPD_0516 pseudouridine synthase; pseudouridine synthase 359616..360452 Rhodopseudomonas palustris BisA53 4357698 YP_779259.1 CDS RPE_0320 NC_008435.1 360624 361889 R KEGG: rpc:RPC_0214 MiaB-like tRNA modifying enzyme; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: protein of unknown function UPF0004; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying protein complement(360624..361889) Rhodopseudomonas palustris BisA53 4357699 YP_779260.1 CDS dapF NC_008435.1 361892 362758 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(361892..362758) Rhodopseudomonas palustris BisA53 4357700 YP_779261.1 CDS RPE_0322 NC_008435.1 362999 363823 D PFAM: transcription activator, effector binding; KEGG: rpc:RPC_0216 transcription activator, effector binding; transcription activator, effector binding 362999..363823 Rhodopseudomonas palustris BisA53 4357701 YP_779262.1 CDS RPE_0323 NC_008435.1 363829 364539 D PFAM: protein of unknown function DUF541; KEGG: rpc:RPC_0217 protein of unknown function DUF541; hypothetical protein 363829..364539 Rhodopseudomonas palustris BisA53 4357702 YP_779263.1 CDS RPE_0324 NC_008435.1 364682 365740 R TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpc:RPC_0218 twin-arginine translocation pathway signal; hypothetical protein complement(364682..365740) Rhodopseudomonas palustris BisA53 4357703 YP_779264.1 CDS RPE_0325 NC_008435.1 366097 366228 D PFAM: antenna complex, alpha/beta subunit; KEGG: rpc:RPC_0219 antenna complex, alpha/beta subunit; antenna complex subunit alpha/beta 366097..366228 Rhodopseudomonas palustris BisA53 4357704 YP_779265.1 CDS RPE_0326 NC_008435.1 366254 366451 D PFAM: antenna complex, alpha/beta subunit; KEGG: rpd:RPD_2392 antenna complex, alpha/beta subunit; antenna complex subunit alpha/beta 366254..366451 Rhodopseudomonas palustris BisA53 4359994 YP_779266.1 CDS RPE_0327 NC_008435.1 366722 368254 D KEGG: rpa:RPA0245 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; SMART: AAA ATPase; signal recognition particle protein 366722..368254 Rhodopseudomonas palustris BisA53 4359995 YP_779267.1 CDS rpsP NC_008435.1 368389 368721 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 368389..368721 Rhodopseudomonas palustris BisA53 4359996 YP_779268.1 CDS rimM NC_008435.1 368820 369350 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 368820..369350 Rhodopseudomonas palustris BisA53 4359997 YP_779269.1 CDS trmD NC_008435.1 369529 370272 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 369529..370272 Rhodopseudomonas palustris BisA53 4359998 YP_779270.1 CDS rplS NC_008435.1 370387 370782 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 370387..370782 Rhodopseudomonas palustris BisA53 4359999 YP_779271.1 CDS RPE_0332 NC_008435.1 371086 372498 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 371086..372498 Rhodopseudomonas palustris BisA53 4360000 YP_779272.1 CDS RPE_0333 NC_008435.1 372574 374469 R KEGG: rpc:RPC_0064 sulfate adenylyltransferase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; adenylylsulfate kinase; elongation factor Tu, domain 2 protein; sulfate adenylyltransferase, large subunit complement(372574..374469) Rhodopseudomonas palustris BisA53 4360001 YP_779273.1 CDS RPE_0334 NC_008435.1 374469 375455 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(374469..375455) Rhodopseudomonas palustris BisA53 4360002 YP_779274.1 CDS RPE_0335 NC_008435.1 375452 376471 R KEGG: rpc:RPC_0062 hypothetical protein; hypothetical protein complement(375452..376471) Rhodopseudomonas palustris BisA53 4360003 YP_779275.1 CDS RPE_0336 NC_008435.1 377190 377504 R KEGG: rpb:RPB_0346 hypothetical protein; hypothetical protein complement(377190..377504) Rhodopseudomonas palustris BisA53 4360004 YP_779276.1 CDS RPE_0337 NC_008435.1 377587 377922 R KEGG: rpc:RPC_0228 hypothetical protein; hypothetical protein complement(377587..377922) Rhodopseudomonas palustris BisA53 4360005 YP_779277.1 CDS RPE_0338 NC_008435.1 378037 378483 D PFAM: protein of unknown function DUF1025; KEGG: rpa:RPA0236 hypothetical protein; hypothetical protein 378037..378483 Rhodopseudomonas palustris BisA53 4360006 YP_779278.1 CDS leuD NC_008435.1 378567 379172 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 378567..379172 Rhodopseudomonas palustris BisA53 4360007 YP_779279.1 CDS RPE_0340 NC_008435.1 379482 380360 R PFAM: HpcH/HpaI aldolase; KEGG: rpc:RPC_0233 citryl-CoA lyase; Citryl-CoA lyase complement(379482..380360) Rhodopseudomonas palustris BisA53 4360008 YP_779280.1 CDS RPE_0341 NC_008435.1 380478 381128 D PFAM: carbonic anhydrase; KEGG: rpc:RPC_0234 carbonate dehydratase; carbonate dehydratase 380478..381128 Rhodopseudomonas palustris BisA53 4360009 YP_779281.1 CDS RPE_0342 NC_008435.1 381188 381811 R catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(381188..381811) Rhodopseudomonas palustris BisA53 4360010 YP_779282.1 CDS RPE_0343 NC_008435.1 381846 382667 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(381846..382667) Rhodopseudomonas palustris BisA53 4360011 YP_779283.1 CDS RPE_0344 NC_008435.1 382759 383061 R PFAM: protein of unknown function DUF1330; KEGG: rpc:RPC_0334 protein of unknown function DUF1330; hypothetical protein complement(382759..383061) Rhodopseudomonas palustris BisA53 4358225 YP_779284.1 CDS RPE_0345 NC_008435.1 383087 383794 R type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(383087..383794) Rhodopseudomonas palustris BisA53 4358226 YP_779285.1 CDS RPE_0346 NC_008435.1 383801 384379 R PFAM: NADPH-dependent FMN reductase; KEGG: rpc:RPC_0332 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(383801..384379) Rhodopseudomonas palustris BisA53 4358227 YP_779286.1 CDS RPE_0347 NC_008435.1 384430 385032 R KEGG: rpc:RPC_0331 ribosomal RNA adenine methylase transferase; ribosomal RNA adenine methylase transferase complement(384430..385032) Rhodopseudomonas palustris BisA53 4358228 YP_779287.1 CDS RPE_0348 NC_008435.1 385121 386305 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(385121..386305) Rhodopseudomonas palustris BisA53 4358229 YP_779288.1 CDS dnaK NC_008435.1 386393 388294 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(386393..388294) Rhodopseudomonas palustris BisA53 4358230 YP_779289.1 CDS RPE_0350 NC_008435.1 389049 389999 D KEGG: rpc:RPC_0328 hypothetical protein; hypothetical protein 389049..389999 Rhodopseudomonas palustris BisA53 4358231 YP_779290.1 CDS RPE_0351 NC_008435.1 390080 390703 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(390080..390703) Rhodopseudomonas palustris BisA53 4358232 YP_779291.1 CDS hrcA NC_008435.1 390806 391930 R Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(390806..391930) Rhodopseudomonas palustris BisA53 4358233 YP_779292.1 CDS rph NC_008435.1 392033 392764 D RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 392033..392764 Rhodopseudomonas palustris BisA53 4358234 YP_779293.1 CDS RPE_0354 NC_008435.1 392799 393434 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 392799..393434 Rhodopseudomonas palustris BisA53 4358235 YP_779294.1 CDS RPE_0355 NC_008435.1 393421 394581 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 393421..394581 Rhodopseudomonas palustris BisA53 4358236 YP_779295.1 CDS RPE_0356 NC_008435.1 394727 395971 R PFAM: Extracellular ligand-binding receptor; KEGG: rpc:RPC_0322 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(394727..395971) Rhodopseudomonas palustris BisA53 4358237 YP_779296.1 CDS RPE_0357 NC_008435.1 396079 397026 D TIGRFAM: Protein of unknown function UPF0011; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rpc:RPC_0321 protein of unknown function UPF0011; hypothetical protein 396079..397026 Rhodopseudomonas palustris BisA53 4358238 YP_779297.1 CDS RPE_0358 NC_008435.1 397013 397405 D PFAM: protein of unknown function UPF0102; KEGG: rpc:RPC_0320 protein of unknown function UPF0102; hypothetical protein 397013..397405 Rhodopseudomonas palustris BisA53 4358239 YP_779298.1 CDS RPE_0359 NC_008435.1 397447 398388 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 397447..398388 Rhodopseudomonas palustris BisA53 4358240 YP_779299.1 CDS RPE_0360 NC_008435.1 398491 400029 D KEGG: rpc:RPC_0317 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Mg chelatase-like protein 398491..400029 Rhodopseudomonas palustris BisA53 4358241 YP_779300.1 CDS RPE_0361 NC_008435.1 400152 400622 D KEGG: rpc:RPC_0316 hypothetical protein; hypothetical protein 400152..400622 Rhodopseudomonas palustris BisA53 4358120 YP_779301.1 CDS RPE_0362 NC_008435.1 400780 403029 D KEGG: rpc:RPC_0315 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 400780..403029 Rhodopseudomonas palustris BisA53 4358121 YP_779302.1 CDS RPE_0363 NC_008435.1 403178 404128 D KEGG: rpc:RPC_0314 hypothetical protein; hypothetical protein 403178..404128 Rhodopseudomonas palustris BisA53 4358122 YP_779303.1 CDS RPE_0364 NC_008435.1 404531 405487 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(404531..405487) Rhodopseudomonas palustris BisA53 4358123 YP_779304.1 CDS hisE NC_008435.1 405596 405919 R catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase complement(405596..405919) Rhodopseudomonas palustris BisA53 4358124 YP_779305.1 CDS RPE_0366 NC_008435.1 405972 406739 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(405972..406739) Rhodopseudomonas palustris BisA53 4358125 YP_779306.1 CDS RPE_0367 NC_008435.1 406749 407486 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(406749..407486) Rhodopseudomonas palustris BisA53 4358126 YP_779307.1 CDS hisH NC_008435.1 407483 408133 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(407483..408133) Rhodopseudomonas palustris BisA53 4358127 YP_779308.1 CDS RPE_0369 NC_008435.1 408130 408627 R KEGG: rpc:RPC_0305 hypothetical protein; hypothetical protein complement(408130..408627) Rhodopseudomonas palustris BisA53 4358128 YP_779309.1 CDS hisB NC_008435.1 408654 409247 R catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase complement(408654..409247) Rhodopseudomonas palustris BisA53 4358129 YP_779310.1 CDS RPE_0371 NC_008435.1 409565 410137 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 409565..410137 Rhodopseudomonas palustris BisA53 4358130 YP_779311.1 CDS hslU NC_008435.1 410301 411602 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 410301..411602 Rhodopseudomonas palustris BisA53 4358131 YP_779312.1 CDS RPE_0373 NC_008435.1 411788 412390 R PFAM: Smr protein/MutS2; KEGG: rpc:RPC_0301 Smr protein/MutS2; Smr protein/MutS2 complement(411788..412390) Rhodopseudomonas palustris BisA53 4358132 YP_779313.1 CDS RPE_0374 NC_008435.1 412387 413745 R PFAM: MltA domain protein; 3D domain protein; KEGG: rpc:RPC_0300 MltA; MltA domain-containing protein complement(412387..413745) Rhodopseudomonas palustris BisA53 4358133 YP_779314.1 CDS RPE_0375 NC_008435.1 413900 414601 R PFAM: import inner membrane translocase, subunit Tim44; KEGG: rpc:RPC_0299 import inner membrane translocase, subunit Tim44; import inner membrane translocase subunit Tim44 complement(413900..414601) Rhodopseudomonas palustris BisA53 4358134 YP_779315.1 CDS RPE_0376 NC_008435.1 415022 415507 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 415022..415507 Rhodopseudomonas palustris BisA53 4358135 YP_779316.1 CDS RPE_0377 NC_008435.1 415560 416249 R KEGG: rpc:RPC_0297 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(415560..416249) Rhodopseudomonas palustris BisA53 4358136 YP_779317.1 CDS coaE NC_008435.1 416274 416873 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(416274..416873) Rhodopseudomonas palustris BisA53 4358137 YP_779318.1 CDS RPE_0379 NC_008435.1 416894 417502 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: rpc:RPC_0295 maf protein; maf protein complement(416894..417502) Rhodopseudomonas palustris BisA53 4357723 YP_779319.1 CDS RPE_0380 NC_008435.1 417499 418338 R PFAM: protein of unknown function DUF299; KEGG: rpc:RPC_0294 protein of unknown function DUF299; hypothetical protein complement(417499..418338) Rhodopseudomonas palustris BisA53 4357724 YP_779320.1 CDS RPE_0381 NC_008435.1 418803 419237 D PFAM: conserved hypothetical protein 701; KEGG: rpb:RPB_0394 hypothetical protein; hypothetical protein 418803..419237 Rhodopseudomonas palustris BisA53 4357725 YP_779321.1 CDS rho NC_008435.1 419539 420804 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 419539..420804 Rhodopseudomonas palustris BisA53 4357726 YP_779322.1 CDS trmE NC_008435.1 421043 422491 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 421043..422491 Rhodopseudomonas palustris BisA53 4357727 YP_779323.1 CDS RPE_0384 NC_008435.1 422647 424515 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 422647..424515 Rhodopseudomonas palustris BisA53 4357728 YP_779324.1 CDS gidB NC_008435.1 424979 425674 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 424979..425674 Rhodopseudomonas palustris BisA53 4357729 YP_779325.1 CDS RPE_0386 NC_008435.1 425671 426522 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rpc:RPC_0288 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 425671..426522 Rhodopseudomonas palustris BisA53 4357730 YP_779326.1 CDS RPE_0387 NC_008435.1 426771 427673 D TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: rpc:RPC_0287 ParB-like partition proteins; parB-like partition proteins 426771..427673 Rhodopseudomonas palustris BisA53 4357731 YP_779327.1 CDS holA NC_008435.1 427956 428984 R required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(427956..428984) Rhodopseudomonas palustris BisA53 4357732 YP_779328.1 CDS RPE_0389 NC_008435.1 428986 429537 R KEGG: rpc:RPC_0285 hypothetical protein; hypothetical protein complement(428986..429537) Rhodopseudomonas palustris BisA53 4357733 YP_779329.1 CDS leuS NC_008435.1 429524 432190 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(429524..432190) Rhodopseudomonas palustris BisA53 4357734 YP_779330.1 CDS RPE_0391 NC_008435.1 432387 434066 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: rpc:RPC_0283 diguanylate cyclase (GGDEF domain); diguanylate cyclase complement(432387..434066) Rhodopseudomonas palustris BisA53 4357735 YP_779331.1 CDS RPE_0392 NC_008435.1 434273 434938 D TIGRFAM: Protein of unknown function UPF0001; PFAM: alanine racemase domain protein; KEGG: rpd:RPD_0438 protein of unknown function UPF0001; hypothetical protein 434273..434938 Rhodopseudomonas palustris BisA53 4357736 YP_779332.1 CDS RPE_0393 NC_008435.1 434964 435572 R KEGG: rpc:RPC_0281 hypothetical protein; hypothetical protein complement(434964..435572) Rhodopseudomonas palustris BisA53 4357737 YP_779333.1 CDS RPE_0394 NC_008435.1 435709 436392 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_0280 two component transcriptional regulator, winged helix family; two component transcriptional regulator 435709..436392 Rhodopseudomonas palustris BisA53 4357738 YP_779334.1 CDS RPE_0395 NC_008435.1 436459 436905 D PFAM: cyclic nucleotide-binding; KEGG: rpc:RPC_0279 cyclic nucleotide-binding domain (cNMP-BD) protein; cyclic nucleotide-binding protein 436459..436905 Rhodopseudomonas palustris BisA53 4357739 YP_779335.1 CDS RPE_0396 NC_008435.1 437093 437905 R TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rpc:RPC_0278 exodeoxyribonuclease III (xth); exodeoxyribonuclease III Xth complement(437093..437905) Rhodopseudomonas palustris BisA53 4359158 YP_779336.1 CDS RPE_0397 NC_008435.1 438096 438944 R PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: rpc:RPC_0277 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA complement(438096..438944) Rhodopseudomonas palustris BisA53 4359159 YP_779337.1 CDS RPE_0398 NC_008435.1 439094 441556 R PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: rpc:RPC_0276 cell divisionFtsK/SpoIIIE; cell division protein FtsK complement(439094..441556) Rhodopseudomonas palustris BisA53 4359160 YP_779338.1 CDS RPE_0399 NC_008435.1 441553 442791 R PFAM: aminotransferase, class I and II; KEGG: rpc:RPC_0275 aminotransferase, class I and II; class I and II aminotransferase complement(441553..442791) Rhodopseudomonas palustris BisA53 4359161 YP_779339.1 CDS RPE_0400 NC_008435.1 442950 443294 R PFAM: protein of unknown function DUF86; KEGG: rpc:RPC_0274 protein of unknown function DUF86; hypothetical protein complement(442950..443294) Rhodopseudomonas palustris BisA53 4359162 YP_779340.1 CDS RPE_0401 NC_008435.1 443284 443652 R PFAM: DNA polymerase, beta domain protein region; KEGG: rpc:RPC_0273 DNA polymerase, beta-like region; DNA polymerase subunit beta complement(443284..443652) Rhodopseudomonas palustris BisA53 4359163 YP_779341.1 CDS RPE_0402 NC_008435.1 443766 445208 R TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: rpa:RPA0275 putative ammonium transporter AmtB; ammonium transporter complement(443766..445208) Rhodopseudomonas palustris BisA53 4359164 YP_779342.1 CDS RPE_0403 NC_008435.1 445246 445584 R PFAM: nitrogen regulatory protein P-II; KEGG: rpd:RPD_0449 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II complement(445246..445584) Rhodopseudomonas palustris BisA53 4359165 YP_779343.1 CDS RPE_0404 NC_008435.1 445988 447292 R TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: rpc:RPC_0270 ammonium transporter; ammonium transporter complement(445988..447292) Rhodopseudomonas palustris BisA53 4359166 YP_779344.1 CDS RPE_0405 NC_008435.1 447361 447699 R PFAM: nitrogen regulatory protein P-II; KEGG: rpd:RPD_0451 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II complement(447361..447699) Rhodopseudomonas palustris BisA53 4359167 YP_779345.1 CDS RPE_0406 NC_008435.1 447872 448753 R KEGG: rpc:RPC_0268 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II complement(447872..448753) Rhodopseudomonas palustris BisA53 4359168 YP_779346.1 CDS RPE_0407 NC_008435.1 448906 450126 D TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: rpc:RPC_0267 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-octaprenyl-6-methoxyphenyl hydroxylase 448906..450126 Rhodopseudomonas palustris BisA53 4359169 YP_779347.1 CDS RPE_0408 NC_008435.1 450190 450390 R PFAM: protein of unknown function DUF343; KEGG: rpc:RPC_0266 protein of unknown function DUF343; hypothetical protein complement(450190..450390) Rhodopseudomonas palustris BisA53 4359170 YP_779348.1 CDS RPE_0409 NC_008435.1 450479 451153 R PFAM: peptidase S16, lon domain protein; KEGG: nha:Nham_0082 peptidase S16, lon-like; peptidase S16, lon domain-containing protein complement(450479..451153) Rhodopseudomonas palustris BisA53 4359171 YP_779349.1 CDS RPE_0410 NC_008435.1 451174 452094 R PFAM: Thioredoxin domain; KEGG: rpa:RPA0267 possible thioredoxin; thioredoxin domain-containing protein complement(451174..452094) Rhodopseudomonas palustris BisA53 4359172 YP_779350.1 CDS RPE_0411 NC_008435.1 452748 453521 R PFAM: histidine kinase, HAMP region domain protein; KEGG: rpc:RPC_0263 histidine kinase, HAMP region; histidine kinase complement(452748..453521) Rhodopseudomonas palustris BisA53 4359174 YP_779351.1 CDS RPE_0412 NC_008435.1 454055 455032 D KEGG: rpc:RPC_0262 putative photosynthesis gene regulator, AppA/PpaA family; AppA/PpaA family photosynthesis gene regulator 454055..455032 Rhodopseudomonas palustris BisA53 4360252 YP_779352.1 CDS RPE_0413 NC_008435.1 455406 456497 D KEGG: rpc:RPC_0261 hypothetical protein; hypothetical protein 455406..456497 Rhodopseudomonas palustris BisA53 4360253 YP_779353.1 CDS RPE_0414 NC_008435.1 456688 457941 R KEGG: rpc:RPC_0260 molecular chaperone, HSP70 class; molecular chaperone, HSP70 class complement(456688..457941) Rhodopseudomonas palustris BisA53 4360254 YP_779354.1 CDS RPE_0415 NC_008435.1 458182 460536 D PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: rpc:RPC_0259 RNA binding S1; RNA-binding S1 domain-containing protein 458182..460536 Rhodopseudomonas palustris BisA53 4360255 YP_779355.1 CDS RPE_0416 NC_008435.1 460617 461249 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpb:RPB_1973 epoxide hydrolase; HAD family phosphatase 460617..461249 Rhodopseudomonas palustris BisA53 4360256 YP_779356.1 CDS RPE_0417 NC_008435.1 461484 462464 D PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_0258 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 461484..462464 Rhodopseudomonas palustris BisA53 4360257 YP_779357.1 CDS RPE_0418 NC_008435.1 462591 463742 D KEGG: rpc:RPC_0257 hypothetical protein; hypothetical protein 462591..463742 Rhodopseudomonas palustris BisA53 4360258 YP_779358.1 CDS RPE_0419 NC_008435.1 463739 464833 D KEGG: rpc:RPC_0256 hypothetical protein; hypothetical protein 463739..464833 Rhodopseudomonas palustris BisA53 4360259 YP_779359.1 CDS RPE_0420 NC_008435.1 464826 466187 D KEGG: rpc:RPC_0255 hypothetical protein; hypothetical protein 464826..466187 Rhodopseudomonas palustris BisA53 4360260 YP_779360.1 CDS RPE_0421 NC_008435.1 466266 466619 D KEGG: rpb:RPB_4696 hypothetical protein; hypothetical protein 466266..466619 Rhodopseudomonas palustris BisA53 4360261 YP_779361.1 CDS RPE_0422 NC_008435.1 466788 468086 R PFAM: ribulose bisphosphate carboxylase, large chain; KEGG: rpc:RPC_0252 ribulose-bisphosphate carboxylase; RuBisCO-like protein Rlp2 complement(466788..468086) Rhodopseudomonas palustris BisA53 4360262 YP_779362.1 CDS RPE_0423 NC_008435.1 468091 468531 R PFAM: protein of unknown function UPF0047; KEGG: rpc:RPC_0251 protein of unknown function UPF0047; hypothetical protein complement(468091..468531) Rhodopseudomonas palustris BisA53 4360263 YP_779363.1 CDS RPE_0424 NC_008435.1 468715 469110 D KEGG: rpc:RPC_4551 SecC-like protein; SecC-like protein 468715..469110 Rhodopseudomonas palustris BisA53 4360264 YP_779364.1 CDS RPE_0425 NC_008435.1 469216 470838 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_0949 ABC transporter related; ABC transporter-like protein 469216..470838 Rhodopseudomonas palustris BisA53 4360265 YP_779365.1 CDS RPE_0426 NC_008435.1 470961 471575 D PFAM: 3'-5' exonuclease; KEGG: rpc:RPC_0419 3'-5' exonuclease; 3'-5' exonuclease 470961..471575 Rhodopseudomonas palustris BisA53 4360266 YP_779366.1 CDS RPE_0427 NC_008435.1 471793 472491 D KEGG: rpc:RPC_0418 hypothetical protein; hypothetical protein 471793..472491 Rhodopseudomonas palustris BisA53 4360267 YP_779367.1 CDS RPE_0428 NC_008435.1 472481 473170 D PFAM: OstA family protein; KEGG: rpc:RPC_0417 OstA-like protein; OstA-like protein 472481..473170 Rhodopseudomonas palustris BisA53 4360268 YP_779368.1 CDS RPE_0429 NC_008435.1 473357 474301 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_0177 ABC transporter related; ABC transporter-like protein 473357..474301 Rhodopseudomonas palustris BisA53 4357671 YP_779369.1 CDS RPE_0430 NC_008435.1 474408 476051 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 474408..476051 Rhodopseudomonas palustris BisA53 4357672 YP_779370.1 CDS RPE_0431 NC_008435.1 476108 476698 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: rpc:RPC_0414 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/ribosomal protein S30EA 476108..476698 Rhodopseudomonas palustris BisA53 4357673 YP_779371.1 CDS RPE_0432 NC_008435.1 476937 477398 D TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: rpc:RPC_0413 PTS IIA-like nitrogen-regulatory protein PtsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 476937..477398 Rhodopseudomonas palustris BisA53 4357674 YP_779372.1 CDS RPE_0433 NC_008435.1 477522 479057 R KEGG: rpc:RPC_2948 hypothetical protein; hypothetical protein complement(477522..479057) Rhodopseudomonas palustris BisA53 4357675 YP_779373.1 CDS RPE_0434 NC_008435.1 479513 479776 R PFAM: protein of unknown function DUF1150; KEGG: rpc:RPC_0410 protein of unknown function DUF1150; hypothetical protein complement(479513..479776) Rhodopseudomonas palustris BisA53 4357676 YP_779374.1 CDS RPE_0435 NC_008435.1 479829 480254 R PFAM: heat shock protein Hsp20; KEGG: rpc:RPC_0409 heat shock protein HSP20; heat shock protein Hsp20 complement(479829..480254) Rhodopseudomonas palustris BisA53 4357677 YP_779375.1 CDS ugpC NC_008435.1 480412 481497 R part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit complement(480412..481497) Rhodopseudomonas palustris BisA53 4357678 YP_779376.1 CDS RPE_0437 NC_008435.1 481625 482473 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_0407 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(481625..482473) Rhodopseudomonas palustris BisA53 4357679 YP_779377.1 CDS RPE_0438 NC_008435.1 482715 483596 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_0406 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(482715..483596) Rhodopseudomonas palustris BisA53 4357680 YP_779378.1 CDS RPE_0439 NC_008435.1 483598 483993 R PFAM: protein of unknown function DUF559; KEGG: rpc:RPC_0405 protein of unknown function DUF559; hypothetical protein complement(483598..483993) Rhodopseudomonas palustris BisA53 4357681 YP_779379.1 CDS RPE_0440 NC_008435.1 484137 485453 R PFAM: extracellular solute-binding protein, family 1; KEGG: rpc:RPC_0404 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(484137..485453) Rhodopseudomonas palustris BisA53 4357682 YP_779380.1 CDS RPE_0441 NC_008435.1 485625 486830 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rpc:RPC_0403 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(485625..486830) Rhodopseudomonas palustris BisA53 4357683 YP_779381.1 CDS RPE_0442 NC_008435.1 486837 487112 R PFAM: Excinuclease ABC, C subunit domain protein; KEGG: rpc:RPC_0402 excinuclease ABC, C subunit-like; excinuclease ABC subunit C complement(486837..487112) Rhodopseudomonas palustris BisA53 4357684 YP_779382.1 CDS RPE_0443 NC_008435.1 487543 487953 R TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_0401 hypothetical protein; hypothetical protein complement(487543..487953) Rhodopseudomonas palustris BisA53 4357686 YP_779383.1 CDS RPE_0444 NC_008435.1 488096 489433 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 488096..489433 Rhodopseudomonas palustris BisA53 4357687 YP_779384.1 CDS RPE_0445 NC_008435.1 489438 490109 R PFAM: protein of unknown function DUF374; KEGG: rpc:RPC_0399 protein of unknown function DUF374; hypothetical protein complement(489438..490109) Rhodopseudomonas palustris BisA53 4358574 YP_779385.1 CDS cmk NC_008435.1 490300 490935 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 490300..490935 Rhodopseudomonas palustris BisA53 4358575 YP_779386.1 CDS RPE_0447 NC_008435.1 490971 491276 D hypothetical protein 490971..491276 Rhodopseudomonas palustris BisA53 4358576 YP_779387.1 CDS RPE_0448 NC_008435.1 491257 491754 D KEGG: rpc:RPC_0445 hypothetical protein; hypothetical protein 491257..491754 Rhodopseudomonas palustris BisA53 4358577 YP_779388.1 CDS rpsA NC_008435.1 492122 493819 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 492122..493819 Rhodopseudomonas palustris BisA53 4358578 YP_779389.1 CDS RPE_0450 NC_008435.1 494025 494999 D TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: rpc:RPC_0396 signal peptide peptidase SppA, 36K type; signal peptide peptidase SppA, 36K type 494025..494999 Rhodopseudomonas palustris BisA53 4358579 YP_779390.1 CDS ihfB NC_008435.1 495159 495467 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 495159..495467 Rhodopseudomonas palustris BisA53 4358580 YP_779391.1 CDS RPE_0452 NC_008435.1 495499 495900 D KEGG: rpc:RPC_0394 hypothetical protein; hypothetical protein 495499..495900 Rhodopseudomonas palustris BisA53 4358581 YP_779392.1 CDS RPE_0453 NC_008435.1 495951 496607 D catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 495951..496607 Rhodopseudomonas palustris BisA53 4358582 YP_779393.1 CDS RPE_0454 NC_008435.1 496607 497821 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 496607..497821 Rhodopseudomonas palustris BisA53 4358583 YP_779394.1 CDS trpA NC_008435.1 497821 498657 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 497821..498657 Rhodopseudomonas palustris BisA53 4358584 YP_779395.1 CDS RPE_0456 NC_008435.1 498828 499805 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 498828..499805 Rhodopseudomonas palustris BisA53 4358585 YP_779396.1 CDS RPE_0457 NC_008435.1 499802 501145 D KEGG: rpc:RPC_0389 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 499802..501145 Rhodopseudomonas palustris BisA53 4358586 YP_779397.1 CDS RPE_0458 NC_008435.1 501174 501920 D PFAM: thiopurine S-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: vpa:VP1368 hypothetical protein; type 11 methyltransferase 501174..501920 Rhodopseudomonas palustris BisA53 4358587 YP_779398.1 CDS RPE_0459 NC_008435.1 501950 502270 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: rpa:RPA0073 thioredoxin; thioredoxin complement(501950..502270) Rhodopseudomonas palustris BisA53 4358588 YP_779399.1 CDS RPE_0460 NC_008435.1 502366 505863 R PFAM: UvrD/REP helicase; KEGG: rpc:RPC_0387 UvrD/REP helicase; UvrD/REP helicase complement(502366..505863) Rhodopseudomonas palustris BisA53 4358589 YP_779400.1 CDS RPE_0461 NC_008435.1 505860 509009 R KEGG: rpc:RPC_0386 hypothetical protein; hypothetical protein complement(505860..509009) Rhodopseudomonas palustris BisA53 4358590 YP_779401.1 CDS RPE_0462 NC_008435.1 509309 510031 R PFAM: Nucleotidyl transferase; KEGG: rpd:RPD_0204 nucleotidyl transferase; nucleotidyl transferase complement(509309..510031) Rhodopseudomonas palustris BisA53 4358642 YP_779402.1 CDS RPE_0463 NC_008435.1 510168 510491 R KEGG: rpb:RPB_0626 hypothetical protein; hypothetical protein complement(510168..510491) Rhodopseudomonas palustris BisA53 4358643 YP_779403.1 CDS RPE_0464 NC_008435.1 510565 512088 R PFAM: aminoglycoside phosphotransferase; protein of unknown function UPF0079; KEGG: rpc:RPC_0383 protein of unknown function UPF0079; hypothetical protein complement(510565..512088) Rhodopseudomonas palustris BisA53 4358644 YP_779404.1 CDS RPE_0465 NC_008435.1 512085 514616 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: rpc:RPC_0382 PAS/PAC sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase complement(512085..514616) Rhodopseudomonas palustris BisA53 4358645 YP_779405.1 CDS dut NC_008435.1 514936 515388 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(514936..515388) Rhodopseudomonas palustris BisA53 4358646 YP_779406.1 CDS RPE_0467 NC_008435.1 515385 516821 R catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; in the alphaproteobacteria, this protein contains an N-terminal SbtC-like domain; bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase complement(515385..516821) Rhodopseudomonas palustris BisA53 4358647 YP_779407.1 CDS RPE_0468 NC_008435.1 517111 517908 D KEGG: ttj:TTHA1533 hypothetical protein; hypothetical protein 517111..517908 Rhodopseudomonas palustris BisA53 4358648 YP_779408.1 CDS RPE_0469 NC_008435.1 518129 519706 R TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: rpc:RPC_0379 2-polyprenylphenol 6-hydroxylase; 2-polyprenylphenol 6-hydroxylase complement(518129..519706) Rhodopseudomonas palustris BisA53 4358649 YP_779409.1 CDS ubiE NC_008435.1 519703 520578 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(519703..520578) Rhodopseudomonas palustris BisA53 4358650 YP_779410.1 CDS RPE_0471 NC_008435.1 520601 521482 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 520601..521482 Rhodopseudomonas palustris BisA53 4358651 YP_779411.1 CDS RPE_0472 NC_008435.1 521522 521740 R KEGG: gvi:gsr4342 virulence-associated protein VapB homolog; virulence-associated protein VapB-like protein complement(521522..521740) Rhodopseudomonas palustris BisA53 4358652 YP_779412.1 CDS RPE_0473 NC_008435.1 521889 523403 D catalyzes the formation of malonyl-CoA from malonate and CoA; malonyl-CoA synthase 521889..523403 Rhodopseudomonas palustris BisA53 4358653 YP_779413.1 CDS RPE_0474 NC_008435.1 523652 524458 D PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpc:RPC_0246 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 523652..524458 Rhodopseudomonas palustris BisA53 4358654 YP_779414.1 CDS RPE_0475 NC_008435.1 524707 525624 D consists of N-terminal helix-turn-helix domain and C-terminal shikimate kinase-like domain which may bind benzoyl-CoA; controls inducible expression of the bzd catabolic operon that is involved in the anaerobic catabolism of benzoate; anaerobic benzoate catabolism transcriptional regulator 524707..525624 Rhodopseudomonas palustris BisA53 4358655 YP_779415.1 CDS RPE_0476 NC_008435.1 525935 526522 D PFAM: beta-Ig-H3/fasciclin; KEGG: rpc:RPC_0244 beta-Ig-H3/fasciclin; beta-Ig-H3/fasciclin 525935..526522 Rhodopseudomonas palustris BisA53 4358656 YP_779416.1 CDS RPE_0477 NC_008435.1 526735 527364 D KEGG: rpc:RPC_0243 hypothetical protein; hypothetical protein 526735..527364 Rhodopseudomonas palustris BisA53 4358657 YP_779417.1 CDS RPE_0478 NC_008435.1 527375 528154 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: oxidoreductase, molybdopterin binding; KEGG: rpb:RPB_0333 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal 527375..528154 Rhodopseudomonas palustris BisA53 4358658 YP_779418.1 CDS RPE_0479 NC_008435.1 528403 529692 R PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: rpc:RPC_0241 major facilitator superfamily MFS_1; major facilitator transporter complement(528403..529692) Rhodopseudomonas palustris BisA53 4358659 YP_779419.1 CDS RPE_0480 NC_008435.1 529849 530961 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 529849..530961 Rhodopseudomonas palustris BisA53 4357861 YP_779420.1 CDS RPE_0481 NC_008435.1 531234 531776 D PFAM: protein of unknown function DUF1568; KEGG: rpb:RPB_1952 protein of unknown function DUF1568; hypothetical protein 531234..531776 Rhodopseudomonas palustris BisA53 4357862 YP_779421.1 CDS RPE_0482 NC_008435.1 531988 532359 R KEGG: rpc:RPC_0239 hypothetical protein; hypothetical protein complement(531988..532359) Rhodopseudomonas palustris BisA53 4357863 YP_779422.1 CDS RPE_0483 NC_008435.1 532556 532867 R KEGG: rpd:RPD_0492 hypothetical protein; hypothetical protein complement(532556..532867) Rhodopseudomonas palustris BisA53 4357864 YP_779423.1 CDS RPE_0484 NC_008435.1 532996 534030 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 532996..534030 Rhodopseudomonas palustris BisA53 4357865 YP_779424.1 CDS RPE_0485 NC_008435.1 534304 534873 D PFAM: Uncharacterized protein UPF0114; KEGG: rpc:RPC_0236 uncharacterized protein UPF0114; hypothetical protein 534304..534873 Rhodopseudomonas palustris BisA53 4357866 YP_779425.1 CDS RPE_0486 NC_008435.1 534893 535786 R KEGG: rpc:RPC_0337 transcriptional regulator, AraC family; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; SMART: helix-turn-helix- domain containing protein, AraC type; methylated-DNA--protein-cysteine methyltransferase complement(534893..535786) Rhodopseudomonas palustris BisA53 4357867 YP_779426.1 CDS RPE_0487 NC_008435.1 535839 536402 R KEGG: rpc:RPC_0338 hypothetical protein; hypothetical protein complement(535839..536402) Rhodopseudomonas palustris BisA53 4357868 YP_779427.1 CDS RPE_0488 NC_008435.1 536418 537212 D KEGG: rpa:RPA0343 endonuclease III DNA-(apurinic or apyrimidinic site) lyase; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III 536418..537212 Rhodopseudomonas palustris BisA53 4357869 YP_779428.1 CDS RPE_0489 NC_008435.1 537425 538180 R putative role in sulfur assimilation; CysZ-like protein complement(537425..538180) Rhodopseudomonas palustris BisA53 4357870 YP_779429.1 CDS RPE_0490 NC_008435.1 538257 539285 R KEGG: rpc:RPC_0442 hypothetical protein; hypothetical protein complement(538257..539285) Rhodopseudomonas palustris BisA53 4357871 YP_779430.1 CDS RPE_0491 NC_008435.1 539339 540820 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rpc:RPC_0443 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal 539339..540820 Rhodopseudomonas palustris BisA53 4357872 YP_779431.1 CDS RPE_0492 NC_008435.1 540823 541140 R hypothetical protein complement(540823..541140) Rhodopseudomonas palustris BisA53 4357873 YP_779432.1 CDS pheT NC_008435.1 541226 543637 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(541226..543637) Rhodopseudomonas palustris BisA53 4357874 YP_779433.1 CDS RPE_0494 NC_008435.1 543634 544110 R KEGG: rpc:RPC_0445 hypothetical protein; hypothetical protein complement(543634..544110) Rhodopseudomonas palustris BisA53 4357875 YP_779434.1 CDS RPE_0495 NC_008435.1 544107 544403 R KEGG: rpc:RPC_0446 hypothetical protein; hypothetical protein complement(544107..544403) Rhodopseudomonas palustris BisA53 4357876 YP_779435.1 CDS pheS NC_008435.1 544420 545517 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(544420..545517) Rhodopseudomonas palustris BisA53 4357877 YP_779436.1 CDS rplT NC_008435.1 545708 546067 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(545708..546067) Rhodopseudomonas palustris BisA53 4358625 YP_779437.1 CDS rpmI NC_008435.1 546153 546353 R PFAM: ribosomal protein L35; KEGG: nha:Nham_0076 ribosomal protein L35; 50S ribosomal protein L35 complement(546153..546353) Rhodopseudomonas palustris BisA53 4358626 YP_779438.1 CDS RPE_0499 NC_008435.1 546624 547061 D KEGG: rpc:RPC_0450 hypothetical protein; hypothetical protein 546624..547061 Rhodopseudomonas palustris BisA53 4358627 YP_779439.1 CDS infC NC_008435.1 547149 547604 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(547149..547604) Rhodopseudomonas palustris BisA53 4358628 YP_779440.1 CDS RPE_0501 NC_008435.1 548087 548884 D PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_0340 alpha/beta hydrolase fold; hypothetical protein 548087..548884 Rhodopseudomonas palustris BisA53 4358629 YP_779441.1 CDS RPE_0502 NC_008435.1 549056 550174 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: rpc:RPC_0440 4Fe-4S ferredoxin, iron-sulfur binding; hypothetical protein complement(549056..550174) Rhodopseudomonas palustris BisA53 4358630 YP_779442.1 CDS RPE_0503 NC_008435.1 550479 551171 R PFAM: Glutathione S-transferase, C-terminal domain; KEGG: rpc:RPC_0439 glutathione S-transferase-like; glutathione S-transferase complement(550479..551171) Rhodopseudomonas palustris BisA53 4358631 YP_779443.1 CDS RPE_0504 NC_008435.1 551352 552158 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 551352..552158 Rhodopseudomonas palustris BisA53 4358632 YP_779444.1 CDS RPE_0505 NC_008435.1 552190 553176 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: rpc:RPC_0437 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(552190..553176) Rhodopseudomonas palustris BisA53 4358633 YP_779445.1 CDS RPE_0506 NC_008435.1 553432 553980 D KEGG: rpc:RPC_1154 thioesterase superfamily; thioesterase superfamily protein 553432..553980 Rhodopseudomonas palustris BisA53 4358635 YP_779446.1 CDS RPE_0507 NC_008435.1 554330 554845 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpc:RPC_0060 ErfK/YbiS/YcfS/YnhG; hypothetical protein 554330..554845 Rhodopseudomonas palustris BisA53 4358636 YP_779447.1 CDS RPE_0508 NC_008435.1 555038 557059 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_0061 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 555038..557059 Rhodopseudomonas palustris BisA53 4358637 YP_779448.1 CDS RPE_0509 NC_008435.1 557289 558275 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rpc:RPC_0073 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter complement(557289..558275) Rhodopseudomonas palustris BisA53 4358638 YP_779449.1 CDS RPE_0510 NC_008435.1 558568 558966 D PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: rpb:RPB_0327 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome b subunit 558568..558966 Rhodopseudomonas palustris BisA53 4358639 YP_779450.1 CDS RPE_0511 NC_008435.1 558963 559376 D PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: rpb:RPB_0326 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome b subunit 558963..559376 Rhodopseudomonas palustris BisA53 4358640 YP_779451.1 CDS sdhA NC_008435.1 559380 561203 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 559380..561203 Rhodopseudomonas palustris BisA53 4358641 YP_779452.1 CDS RPE_0513 NC_008435.1 561231 561671 D hypothetical protein 561231..561671 Rhodopseudomonas palustris BisA53 4360149 YP_779453.1 CDS sdhB NC_008435.1 561683 562465 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 561683..562465 Rhodopseudomonas palustris BisA53 4360150 YP_779454.1 CDS RPE_0515 NC_008435.1 562616 563104 D PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rpd:RPD_0477 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 562616..563104 Rhodopseudomonas palustris BisA53 4360151 YP_779455.1 CDS RPE_0516 NC_008435.1 563104 563349 D KEGG: rpc:RPC_0066 hypothetical protein; hypothetical protein 563104..563349 Rhodopseudomonas palustris BisA53 4360152 YP_779456.1 CDS RPE_0517 NC_008435.1 563607 565493 D PFAM: OmpA/MotB domain protein; KEGG: rpc:RPC_0065 OmpA/MotB; OmpA/MotB domain-containing protein 563607..565493 Rhodopseudomonas palustris BisA53 4360153 YP_779457.1 CDS RPE_0518 NC_008435.1 565748 566143 R PFAM: membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG); KEGG: rpc:RPC_0077 membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG); membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG) complement(565748..566143) Rhodopseudomonas palustris BisA53 4360154 YP_779458.1 CDS RPE_0519 NC_008435.1 566209 567291 R KEGG: rpb:RPB_4688 hypothetical protein; hypothetical protein complement(566209..567291) Rhodopseudomonas palustris BisA53 4360155 YP_779459.1 CDS RPE_0520 NC_008435.1 567281 569746 R PFAM: protein of unknown function DUF214; KEGG: rpc:RPC_0079 protein of unknown function DUF214; hypothetical protein complement(567281..569746) Rhodopseudomonas palustris BisA53 4360156 YP_779460.1 CDS RPE_0521 NC_008435.1 569743 570426 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_0080 ABC transporter related; ABC transporter-like protein complement(569743..570426) Rhodopseudomonas palustris BisA53 4360157 YP_779461.1 CDS RPE_0522 NC_008435.1 570609 571853 D KEGG: rpc:RPC_0081 protein of unknown function DUF201; hypothetical protein 570609..571853 Rhodopseudomonas palustris BisA53 4360158 YP_779462.1 CDS RPE_0523 NC_008435.1 571862 572050 R KEGG: rpa:RPA4805 hypothetical protein; hypothetical protein complement(571862..572050) Rhodopseudomonas palustris BisA53 4360159 YP_779463.1 CDS RPE_0524 NC_008435.1 572237 572437 D KEGG: rpc:RPC_0082 hypothetical protein; hypothetical protein 572237..572437 Rhodopseudomonas palustris BisA53 4360160 YP_779464.1 CDS RPE_0525 NC_008435.1 572532 572972 R KEGG: rpc:RPC_0083 hypothetical protein; hypothetical protein complement(572532..572972) Rhodopseudomonas palustris BisA53 4360161 YP_779465.1 CDS RPE_0526 NC_008435.1 573108 575216 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpd:RPD_4390 TonB-dependent receptor; TonB-dependent receptor, plug complement(573108..575216) Rhodopseudomonas palustris BisA53 4360162 YP_779466.1 CDS RPE_0527 NC_008435.1 575693 576742 D PFAM: transport system permease protein; KEGG: rpc:RPC_0085 transport system permease protein; transport system permease 575693..576742 Rhodopseudomonas palustris BisA53 4360163 YP_779467.1 CDS RPE_0528 NC_008435.1 576739 577521 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_0086 ABC transporter related; ABC transporter-like protein 576739..577521 Rhodopseudomonas palustris BisA53 4360164 YP_779468.1 CDS RPE_0529 NC_008435.1 577518 578354 D PFAM: periplasmic binding protein; KEGG: rpc:RPC_0087 periplasmic binding protein; periplasmic binding protein 577518..578354 Rhodopseudomonas palustris BisA53 4360165 YP_779469.1 CDS RPE_0530 NC_008435.1 578497 579168 D PFAM: protein of unknown function DUF938; KEGG: rpc:RPC_0088 protein of unknown function DUF938; hypothetical protein 578497..579168 Rhodopseudomonas palustris BisA53 4360012 YP_779470.1 CDS RPE_0531 NC_008435.1 579294 580523 D PFAM: major facilitator superfamily MFS_1; KEGG: rpc:RPC_0089 major facilitator superfamily MFS_1; major facilitator transporter 579294..580523 Rhodopseudomonas palustris BisA53 4360013 YP_779471.1 CDS RPE_0532 NC_008435.1 580669 581865 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rpb:RPB_4675 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 580669..581865 Rhodopseudomonas palustris BisA53 4360014 YP_779472.1 CDS RPE_0533 NC_008435.1 582190 583308 R PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rpc:RPC_4622 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein complement(582190..583308) Rhodopseudomonas palustris BisA53 4360015 YP_779473.1 CDS RPE_0534 NC_008435.1 583418 584557 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpd:RPD_4383 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 583418..584557 Rhodopseudomonas palustris BisA53 4360016 YP_779474.1 CDS RPE_0535 NC_008435.1 584936 585979 R SMART: extracellular solute-binding protein, family 3; KEGG: rpa:RPA4797 ABC transporter, amino acid binding protein; extracellular solute-binding protein complement(584936..585979) Rhodopseudomonas palustris BisA53 4360017 YP_779475.1 CDS RPE_0536 NC_008435.1 586028 586618 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpd:RPD_4381 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein complement(586028..586618) Rhodopseudomonas palustris BisA53 4360018 YP_779476.1 CDS RPE_0537 NC_008435.1 586907 587041 R KEGG: rpc:RPC_0090 hypothetical protein; hypothetical protein complement(586907..587041) Rhodopseudomonas palustris BisA53 4360019 YP_779477.1 CDS RPE_0538 NC_008435.1 587038 588054 R TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: rpc:RPC_0091 cytochrome d ubiquinol oxidase, subunit II; cytochrome d ubiquinol oxidase subunit II complement(587038..588054) Rhodopseudomonas palustris BisA53 4360020 YP_779478.1 CDS RPE_0539 NC_008435.1 588056 589462 R PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: rpc:RPC_0092 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I complement(588056..589462) Rhodopseudomonas palustris BisA53 4360021 YP_779479.1 CDS RPE_0540 NC_008435.1 589811 590422 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(589811..590422) Rhodopseudomonas palustris BisA53 4360022 YP_779480.1 CDS RPE_0541 NC_008435.1 590618 591355 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpa:RPA4791 two-component transcriptional regulator, winged helix family; two component transcriptional regulator complement(590618..591355) Rhodopseudomonas palustris BisA53 4360023 YP_779481.1 CDS RPE_0542 NC_008435.1 591352 593013 R PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_0095 response regulator receiver sensor signal transduction histidine kinase; response regulator receiver sensor signal transduction histidine kinase complement(591352..593013) Rhodopseudomonas palustris BisA53 4360024 YP_779482.1 CDS RPE_0543 NC_008435.1 593070 595154 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: rpc:RPC_0096 periplasmic sensor signal transduction histidine kinase; sensor signal transduction histidine kinase complement(593070..595154) Rhodopseudomonas palustris BisA53 4360025 YP_779483.1 CDS RPE_0544 NC_008435.1 595364 596656 D PFAM: extracellular solute-binding protein, family 1; KEGG: rpc:RPC_0097 extracellular solute-binding protein, family 1; extracellular solute-binding protein 595364..596656 Rhodopseudomonas palustris BisA53 4360026 YP_779484.1 CDS RPE_0545 NC_008435.1 596740 597063 R hypothetical protein complement(596740..597063) Rhodopseudomonas palustris BisA53 4360027 YP_779485.1 CDS RPE_0546 NC_008435.1 597267 598463 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Extracellular ligand-binding receptor; KEGG: rpd:RPD_4371 twin-arginine translocation pathway signal; extracellular ligand-binding receptor 597267..598463 Rhodopseudomonas palustris BisA53 4360028 YP_779486.1 CDS RPE_0547 NC_008435.1 598628 599545 D PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: rpc:RPC_0346 pirin-like; pirin domain-containing protein 598628..599545 Rhodopseudomonas palustris BisA53 4360029 YP_779487.1 CDS RPE_0548 NC_008435.1 599614 600531 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 599614..600531 Rhodopseudomonas palustris BisA53 4357878 YP_779488.1 CDS RPE_0549 NC_008435.1 600572 601705 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(600572..601705) Rhodopseudomonas palustris BisA53 4357879 YP_779489.1 CDS obgE NC_008435.1 601889 602938 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(601889..602938) Rhodopseudomonas palustris BisA53 4357880 YP_779490.1 CDS RPE_0551 NC_008435.1 603058 603969 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: rpd:RPD_0585 protein of unknown function DUF6, transmembrane; hypothetical protein 603058..603969 Rhodopseudomonas palustris BisA53 4357881 YP_779491.1 CDS RPE_0552 NC_008435.1 604141 604431 D hypothetical protein 604141..604431 Rhodopseudomonas palustris BisA53 4357882 YP_779492.1 CDS RPE_0553 NC_008435.1 604772 605719 R PFAM: formate/nitrite transporter; KEGG: rpc:RPC_4565 formate/nitrite transporter; formate/nitrite transporter complement(604772..605719) Rhodopseudomonas palustris BisA53 4357883 YP_779493.1 CDS RPE_0554 NC_008435.1 605967 606563 R PFAM: GCN5-related N-acetyltransferase; KEGG: rpc:RPC_0155 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(605967..606563) Rhodopseudomonas palustris BisA53 4357884 YP_779494.1 CDS rpmA NC_008435.1 606713 606982 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(606713..606982) Rhodopseudomonas palustris BisA53 4357885 YP_779495.1 CDS rplU NC_008435.1 607064 607438 R PFAM: ribosomal protein L21; KEGG: rpb:RPB_0246 ribosomal protein L21; 50S ribosomal protein L21 complement(607064..607438) Rhodopseudomonas palustris BisA53 4357886 YP_779496.1 CDS RPE_0557 NC_008435.1 607834 609009 D KEGG: rpc:RPC_0152 hypothetical protein; hypothetical protein 607834..609009 Rhodopseudomonas palustris BisA53 4357887 YP_779497.1 CDS RPE_0558 NC_008435.1 609299 610942 D PFAM: phage integrase family protein; KEGG: ret:RHE_CH00241 putative recombinase protein, phage integrase family; phage integrase family protein 609299..610942 Rhodopseudomonas palustris BisA53 4357889 YP_779498.1 CDS RPE_0559 NC_008435.1 610939 611280 D hypothetical protein 610939..611280 Rhodopseudomonas palustris BisA53 4357890 YP_779499.1 CDS RPE_0560 NC_008435.1 611404 614295 D PFAM: SNF2-related protein; helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: xcb:XC_0536 helicase; SNF2-like protein 611404..614295 Rhodopseudomonas palustris BisA53 4357891 YP_779500.1 CDS RPE_0561 NC_008435.1 614292 616082 D PFAM: DNA methylase N-4/N-6 domain protein; KEGG: eba:ebA2416 adenine specific DNA methylase MOD; DNA methylase N-4/N-6 domain-containing protein 614292..616082 Rhodopseudomonas palustris BisA53 4357892 YP_779501.1 CDS RPE_0562 NC_008435.1 616082 618766 D PFAM: type III restriction enzyme, res subunit; KEGG: tbd:Tbd_0937 hypothetical protein; type III restriction enzyme, res subunit 616082..618766 Rhodopseudomonas palustris BisA53 4357893 YP_779502.1 CDS RPE_0563 NC_008435.1 618933 620498 D KEGG: nha:Nham_0139 hypothetical protein; hypothetical protein 618933..620498 Rhodopseudomonas palustris BisA53 4359088 YP_779503.1 CDS RPE_0564 NC_008435.1 621349 621738 R hypothetical protein complement(621349..621738) Rhodopseudomonas palustris BisA53 4359089 YP_779504.1 CDS RPE_0565 NC_008435.1 621932 622225 D hypothetical protein 621932..622225 Rhodopseudomonas palustris BisA53 4359090 YP_779505.1 CDS RPE_0566 NC_008435.1 622209 622484 D hypothetical protein 622209..622484 Rhodopseudomonas palustris BisA53 4359091 YP_779506.1 CDS RPE_0567 NC_008435.1 622803 623060 R hypothetical protein complement(622803..623060) Rhodopseudomonas palustris BisA53 4359092 YP_779507.1 CDS RPE_0568 NC_008435.1 623228 625360 D KEGG: rpb:RPB_3050 hypothetical protein; hypothetical protein 623228..625360 Rhodopseudomonas palustris BisA53 4359093 YP_779508.1 CDS RPE_0569 NC_008435.1 626347 627216 R KEGG: reu:Reut_A0008 HNH endonuclease; restriction endonuclease-like protein complement(626347..627216) Rhodopseudomonas palustris BisA53 4359094 YP_779509.1 CDS RPE_0571 NC_008435.1 628259 629149 R hypothetical protein complement(628259..629149) Rhodopseudomonas palustris BisA53 4359096 YP_779510.1 CDS RPE_0572 NC_008435.1 629414 629776 R TIGRFAM: sugar-phosphate isomerases, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: sth:STH2337 ribose 5-phosphate isomerase; ribose 5-phosphate isomerase B complement(629414..629776) Rhodopseudomonas palustris BisA53 4359097 YP_779511.1 CDS RPE_0573 NC_008435.1 629881 630567 R PFAM: ribulose-phosphate 3-epimerase; KEGG: eci:UTI89_C4681 D-allulose-6-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(629881..630567) Rhodopseudomonas palustris BisA53 4359098 YP_779512.1 CDS RPE_0574 NC_008435.1 630596 631552 R PFAM: beta-lactamase; KEGG: dge:Dgeo_0953 beta-lactamase; beta-lactamase complement(630596..631552) Rhodopseudomonas palustris BisA53 4359099 YP_779513.1 CDS RPE_0575 NC_008435.1 631564 632796 R hypothetical protein complement(631564..632796) Rhodopseudomonas palustris BisA53 4359100 YP_779514.1 CDS RPE_0576 NC_008435.1 632857 635208 R hypothetical protein complement(632857..635208) Rhodopseudomonas palustris BisA53 4359101 YP_779515.1 CDS RPE_0577 NC_008435.1 636114 637109 R hypothetical protein complement(636114..637109) Rhodopseudomonas palustris BisA53 4359102 YP_779516.1 CDS RPE_0578 NC_008435.1 637551 638279 D hypothetical protein 637551..638279 Rhodopseudomonas palustris BisA53 4359103 YP_779517.1 CDS nadE NC_008435.1 638654 639691 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(638654..639691) Rhodopseudomonas palustris BisA53 4359104 YP_779518.1 CDS RPE_0580 NC_008435.1 639688 641229 R PFAM: AMP-dependent synthetase and ligase; KEGG: sme:SMb20650 putative long-chain fatty-acid-CoA ligase protein; AMP-dependent synthetase and ligase complement(639688..641229) Rhodopseudomonas palustris BisA53 4359105 YP_779519.1 CDS RPE_0581 NC_008435.1 641280 641546 R KEGG: sme:SMb20651 hypothetical protein; hypothetical protein complement(641280..641546) Rhodopseudomonas palustris BisA53 4358086 YP_779520.1 CDS RPE_0582 NC_008435.1 641559 643511 R TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; KEGG: sme:SMb20652 putative asparagine synthetase protein; asparagine synthase complement(641559..643511) Rhodopseudomonas palustris BisA53 4358087 YP_779521.1 CDS RPE_0583 NC_008435.1 643899 645104 D KEGG: sme:SMb21515 hypothetical protein; hypothetical protein 643899..645104 Rhodopseudomonas palustris BisA53 4358088 YP_779522.1 CDS RPE_0584 NC_008435.1 645201 646652 R KEGG: rpa:RPA0677 hypothetical protein; hypothetical protein complement(645201..646652) Rhodopseudomonas palustris BisA53 4358089 YP_779523.1 CDS RPE_0585 NC_008435.1 646804 648498 R cleaves the ring of 2,3-dihydro-2,3-dihydroxybenzoyl-CoA forming 6-hydroxy-3-hexenoyl-CoA; benzoyl-CoA-dihydrodiol lyase complement(646804..648498) Rhodopseudomonas palustris BisA53 4358090 YP_779524.1 CDS RPE_0586 NC_008435.1 648605 649435 R PFAM: alpha/beta hydrolase fold; KEGG: rpa:RPA0675 possible hydrolase (alpha/beta hydrolase superfamily); alpha/beta hydrolase fold protein complement(648605..649435) Rhodopseudomonas palustris BisA53 4358091 YP_779525.1 CDS RPE_0587 NC_008435.1 649460 650629 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpa:RPA0674 possible alcohol dehydrogenase class III family; alcohol dehydrogenase complement(649460..650629) Rhodopseudomonas palustris BisA53 4358092 YP_779526.1 CDS RPE_0588 NC_008435.1 650803 651528 D PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: rpd:RPD_1522 cyclic nucleotide-binding; Crp/FNR family transcriptional regulator 650803..651528 Rhodopseudomonas palustris BisA53 4358093 YP_779527.1 CDS RPE_0589 NC_008435.1 651561 652547 R PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: rpd:RPD_1523 molybdopterin dehydrogenase, FAD-binding; molybdopterin dehydrogenase protein complement(651561..652547) Rhodopseudomonas palustris BisA53 4358094 YP_779528.1 CDS RPE_0590 NC_008435.1 652544 654880 R PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rpc:RPC_1014 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase complement(652544..654880) Rhodopseudomonas palustris BisA53 4358095 YP_779529.1 CDS RPE_0591 NC_008435.1 654877 655368 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rpd:RPD_1525 (2Fe-2S)-binding; 2Fe-2S iron-sulfur cluster binding domain-containing protein complement(654877..655368) Rhodopseudomonas palustris BisA53 4358096 YP_779530.1 CDS RPE_0592 NC_008435.1 655533 657098 D TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: rpc:RPC_1016 benzoate-CoA ligase family; benzoate-CoA ligase family 655533..657098 Rhodopseudomonas palustris BisA53 4358097 YP_779531.1 CDS RPE_0593 NC_008435.1 657245 658423 D TIGRFAM:Twin-arginine translocation pathway signal; PFAM: Extracellular ligand-binding receptor; KEGG: rpc:RPC_1017 twin-arginine translocation pathway signal; extracellular ligand-binding receptor 657245..658423 Rhodopseudomonas palustris BisA53 4358098 YP_779532.1 CDS RPE_0594 NC_008435.1 658523 659383 D PFAM: inner-membrane translocator; KEGG: rpa:RPA0667 putative membrane spanning subunit of ABC transporter; inner-membrane translocator 658523..659383 Rhodopseudomonas palustris BisA53 4358099 YP_779533.1 CDS RPE_0595 NC_008435.1 659385 661175 D PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_1019 ABC transporter related; ABC transporter-like protein 659385..661175 Rhodopseudomonas palustris BisA53 4358100 YP_779534.1 CDS RPE_0596 NC_008435.1 661172 661894 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_1020 ABC transporter related; ABC transporter-like protein 661172..661894 Rhodopseudomonas palustris BisA53 4358101 YP_779535.1 CDS RPE_0597 NC_008435.1 661921 662889 D PFAM: GCN5-related N-acetyltransferase; KEGG: rpd:RPD_1527 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 661921..662889 Rhodopseudomonas palustris BisA53 4358102 YP_779536.1 CDS RPE_0598 NC_008435.1 662927 663406 D PFAM: GCN5-related N-acetyltransferase; KEGG: rpc:RPC_1022 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 662927..663406 Rhodopseudomonas palustris BisA53 4357962 YP_779537.1 CDS RPE_0599 NC_008435.1 663484 663945 D TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; Helix-turn-helix, type 11 domain protein; KEGG: rpc:RPC_1023 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 663484..663945 Rhodopseudomonas palustris BisA53 4357963 YP_779538.1 CDS RPE_0600 NC_008435.1 663966 664490 R PFAM: Rubrerythrin; KEGG: rpd:RPD_1530 rubrerythrin; rubrerythrin complement(663966..664490) Rhodopseudomonas palustris BisA53 4357964 YP_779539.1 CDS RPE_0601 NC_008435.1 664487 665326 R TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: rpd:RPD_1531 pyruvate/2-ketoisovalerate 2-oxoacid:acceptor oxidoreductase, beta subunit; pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta complement(664487..665326) Rhodopseudomonas palustris BisA53 4357965 YP_779540.1 CDS RPE_0602 NC_008435.1 665323 667056 R PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Transketolase domain protein; KEGG: rpd:RPD_1532 pyruvate flavodoxin/ferredoxin oxidoreductase-like; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein complement(665323..667056) Rhodopseudomonas palustris BisA53 4357966 YP_779541.1 CDS RPE_0603 NC_008435.1 667165 667410 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rpa:RPA0662 ferredoxin; 4Fe-4S ferredoxin complement(667165..667410) Rhodopseudomonas palustris BisA53 4357967 YP_779542.1 CDS RPE_0604 NC_008435.1 667443 669014 R TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: rpc:RPC_1025 benzoate-CoA ligase family; benzoate-CoA ligase family complement(667443..669014) Rhodopseudomonas palustris BisA53 4357968 YP_779543.1 CDS RPE_0605 NC_008435.1 669124 669957 R TIGRFAM: putative CoA-substrate-specific enzyme activase; benzoyl-CoA reductase, subunit D; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: rpc:RPC_1026 benzoyl-CoA reductase, subunit D; benzoyl-CoA reductase subunit D complement(669124..669957) Rhodopseudomonas palustris BisA53 4357969 YP_779544.1 CDS RPE_0606 NC_008435.1 669968 671281 R TIGRFAM: putative CoA-substrate-specific enzyme activase; benzoyl-CoA reductase, subunit A; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: rpc:RPC_1027 benzoyl-CoA reductase, subunit A; benzoyl-CoA reductase subunit A complement(669968..671281) Rhodopseudomonas palustris BisA53 4357970 YP_779545.1 CDS RPE_0607 NC_008435.1 671291 672601 R TIGRFAM: benzoyl-CoA reductase, subunit B; PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: rpd:RPD_1537 benzoyl-CoA reductase, subunit B; benzoyl-CoA reductase subunit B complement(671291..672601) Rhodopseudomonas palustris BisA53 4357971 YP_779546.1 CDS RPE_0608 NC_008435.1 672598 673782 R TIGRFAM: benzoyl-CoA reductase, subunit C; PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: rpc:RPC_1029 benzoyl-CoA reductase, subunit C; benzoyl-CoA reductase subunit C complement(672598..673782) Rhodopseudomonas palustris BisA53 4357972 YP_779547.1 CDS RPE_0609 NC_008435.1 674145 675164 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpc:RPC_1030 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase complement(674145..675164) Rhodopseudomonas palustris BisA53 4357973 YP_779548.1 CDS RPE_0610 NC_008435.1 675240 675767 R PFAM: regulatory protein, MarR; KEGG: rpc:RPC_1031 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(675240..675767) Rhodopseudomonas palustris BisA53 4357974 YP_779549.1 CDS RPE_0611 NC_008435.1 675902 676669 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: rpc:RPC_1032 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 675902..676669 Rhodopseudomonas palustris BisA53 4357975 YP_779550.1 CDS RPE_0612 NC_008435.1 676696 677478 D TIGRFAM: naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpc:RPC_1033 naphthoate synthase; naphthoate synthase 676696..677478 Rhodopseudomonas palustris BisA53 4357976 YP_779551.1 CDS RPE_0613 NC_008435.1 677552 678703 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpc:RPC_1034 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 677552..678703 Rhodopseudomonas palustris BisA53 4357977 YP_779552.1 CDS RPE_0614 NC_008435.1 678749 680392 D AliA; in Rhodopseudomonas palustris, this enzyme was found to act on 3-chlorobenzoate and allows the organism to grow on this substrate; cyclohexanecarboxylate-CoA ligase 678749..680392 Rhodopseudomonas palustris BisA53 4357978 YP_779553.1 CDS RPE_0615 NC_008435.1 680445 681221 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpc:RPC_1036 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 680445..681221 Rhodopseudomonas palustris BisA53 4357979 YP_779554.1 CDS RPE_0616 NC_008435.1 681355 682416 D PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: cya:CYA_0261 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase 681355..682416 Rhodopseudomonas palustris BisA53 4359715 YP_779555.1 CDS RPE_0617 NC_008435.1 682456 684033 D PFAM: protein of unknown function DUF201; KEGG: ava:Ava_0168 hypothetical protein; hypothetical protein 682456..684033 Rhodopseudomonas palustris BisA53 4359716 YP_779556.1 CDS RPE_0618 NC_008435.1 684039 685955 R PFAM: von Willebrand factor, type A; KEGG: rpa:RPA1458 dinitrification protein NorD; von Willebrand factor, type A complement(684039..685955) Rhodopseudomonas palustris BisA53 4359717 YP_779557.1 CDS RPE_0619 NC_008435.1 686296 687414 R PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rpc:RPC_4622 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein complement(686296..687414) Rhodopseudomonas palustris BisA53 4359718 YP_779558.1 CDS RPE_0620 NC_008435.1 687501 688322 R PFAM: ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain protein; KEGG: rpa:RPA1457 regulatory protein NorQ, probable ATPase; ATPase complement(687501..688322) Rhodopseudomonas palustris BisA53 4359719 YP_779559.1 CDS RPE_0621 NC_008435.1 688381 689727 R PFAM: cytochrome c oxidase, subunit I; KEGG: rpa:RPA1456 nitric-oxide reductase subunit B; cytochrome c oxidase subunit I complement(688381..689727) Rhodopseudomonas palustris BisA53 4359720 YP_779560.1 CDS RPE_0622 NC_008435.1 689761 690213 R KEGG: bja:blr3214 nitric oxide reductase subunit C; nitric-oxide reductase complement(689761..690213) Rhodopseudomonas palustris BisA53 4359721 YP_779561.1 CDS RPE_0623 NC_008435.1 690339 690623 R KEGG: rpa:RPA1454 hypothetical protein; hypothetical protein complement(690339..690623) Rhodopseudomonas palustris BisA53 4359722 YP_779562.1 CDS RPE_0624 NC_008435.1 690629 691222 R PFAM: cytochrome c oxidase, subunit III; KEGG: bja:blr3212 nitric oxide reductase subunit E; cytochrome c oxidase subunit III complement(690629..691222) Rhodopseudomonas palustris BisA53 4359723 YP_779563.1 CDS RPE_0625 NC_008435.1 691710 692180 D KEGG: rpa:RPA2067 hypothetical protein; hypothetical protein 691710..692180 Rhodopseudomonas palustris BisA53 4359724 YP_779564.1 CDS RPE_0626 NC_008435.1 692584 692763 R PFAM: antenna complex, alpha/beta subunit; KEGG: rpb:RPB_4447 antenna complex, alpha/beta subunit; antenna complex subunit alpha/beta complement(692584..692763) Rhodopseudomonas palustris BisA53 4359725 YP_779565.1 CDS RPE_0627 NC_008435.1 692778 692909 R PFAM: antenna complex, alpha/beta subunit; KEGG: rpc:RPC_3789 antenna complex, alpha/beta subunit; antenna complex subunit alpha/beta complement(692778..692909) Rhodopseudomonas palustris BisA53 4359726 YP_779566.1 CDS RPE_0628 NC_008435.1 693894 694073 R PFAM: antenna complex, alpha/beta subunit; KEGG: rpb:RPB_4447 antenna complex, alpha/beta subunit; antenna complex subunit alpha/beta complement(693894..694073) Rhodopseudomonas palustris BisA53 4359727 YP_779567.1 CDS RPE_0629 NC_008435.1 694088 694231 R PFAM: antenna complex, alpha/beta subunit; KEGG: rpa:RPA2654 light harvesting protein B-800-850, beta chain A (antenna pigment protein, beta chain A) (LH II-A beta); antenna complex subunit alpha/beta complement(694088..694231) Rhodopseudomonas palustris BisA53 4359728 YP_779568.1 CDS RPE_0630 NC_008435.1 694636 695349 D PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: rpa:RPA3014 two-component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 694636..695349 Rhodopseudomonas palustris BisA53 4359729 YP_779569.1 CDS RPE_0631 NC_008435.1 695586 697883 D PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Phytochrome, central region domain protein; PAS fold-2 domain protein; KEGG: rpb:RPB_4450 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 695586..697883 Rhodopseudomonas palustris BisA53 4359730 YP_779570.1 CDS RPE_0632 NC_008435.1 697880 700210 D PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Phytochrome, central region domain protein; PAS fold-2 domain protein; KEGG: rpb:RPB_4451 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 697880..700210 Rhodopseudomonas palustris BisA53 4359731 YP_779571.1 CDS RPE_0633 NC_008435.1 700207 700671 D PFAM: response regulator receiver; KEGG: rpb:RPB_4452 response regulator receiver domain protein; response regulator receiver protein 700207..700671 Rhodopseudomonas palustris BisA53 4358103 YP_779572.1 CDS RPE_0634 NC_008435.1 700668 701807 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rpd:RPD_2405 ATP-binding region, ATPase-like; response regulator receiver sensor signal transduction histidine kinase 700668..701807 Rhodopseudomonas palustris BisA53 4358104 YP_779573.1 CDS RPE_0635 NC_008435.1 701936 705385 D biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 701936..705385 Rhodopseudomonas palustris BisA53 4358105 YP_779574.1 CDS RPE_0636 NC_008435.1 705650 706693 D catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 705650..706693 Rhodopseudomonas palustris BisA53 4358106 YP_779575.1 CDS RPE_0637 NC_008435.1 707029 707904 D PFAM: putative RNA methylase; methyltransferase small; ribosomal L11 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mth:MTH1329 methyltransferase related protein; methyltransferase small 707029..707904 Rhodopseudomonas palustris BisA53 4358107 YP_779576.1 CDS RPE_0638 NC_008435.1 707963 710005 D PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rpa:RPA0679 hypothetical protein; radical SAM domain-containing protein 707963..710005 Rhodopseudomonas palustris BisA53 4358108 YP_779577.1 CDS RPE_0639 NC_008435.1 710032 710436 R KEGG: rpc:RPC_2253 AtsE; AtsE complement(710032..710436) Rhodopseudomonas palustris BisA53 4358109 YP_779578.1 CDS RPE_0640 NC_008435.1 710546 710878 R hypothetical protein complement(710546..710878) Rhodopseudomonas palustris BisA53 4358110 YP_779579.1 CDS RPE_0641 NC_008435.1 712648 714126 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpb:RPB_0686 signal transduction histidine kinase, nitrogen specific, NtrB; sensor signal transduction histidine kinase complement(712648..714126) Rhodopseudomonas palustris BisA53 4358112 YP_779580.1 CDS rpmH NC_008435.1 714476 714610 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 714476..714610 Rhodopseudomonas palustris BisA53 4358113 YP_779581.1 CDS RPE_0643 NC_008435.1 714634 714975 D TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: rpb:RPB_0684 ribonuclease P protein component; ribonuclease P protein component 714634..714975 Rhodopseudomonas palustris BisA53 4358114 YP_779582.1 CDS RPE_0644 NC_008435.1 714993 716873 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 714993..716873 Rhodopseudomonas palustris BisA53 4358115 YP_779583.1 CDS engB NC_008435.1 716986 717636 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 716986..717636 Rhodopseudomonas palustris BisA53 4358116 YP_779584.1 CDS RPE_0646 NC_008435.1 717636 718013 D PFAM: protein of unknown function DUF423; KEGG: rpc:RPC_0815 protein of unknown function DUF423; hypothetical protein 717636..718013 Rhodopseudomonas palustris BisA53 4358117 YP_779585.1 CDS RPE_0647 NC_008435.1 718117 719013 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 718117..719013 Rhodopseudomonas palustris BisA53 4358118 YP_779586.1 CDS RPE_0648 NC_008435.1 719184 720185 D PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rpc:RPC_0813 hypothetical protein; peptidoglycan binding domain-containing protein 719184..720185 Rhodopseudomonas palustris BisA53 4358119 YP_779587.1 CDS RPE_0649 NC_008435.1 720235 720933 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; pyrimidine 5'-nucleotidase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpa:RPA0627 putative haloacid dehalogenase superfamily hydrolase; pyrimidine 5'-nucleotidase 720235..720933 Rhodopseudomonas palustris BisA53 4357774 YP_779588.1 CDS RPE_0650 NC_008435.1 721007 721306 R PFAM: Excinuclease ABC, C subunit domain protein; KEGG: bja:blr8111 hypothetical protein; excinuclease ABC subunit C complement(721007..721306) Rhodopseudomonas palustris BisA53 4357775 YP_779589.1 CDS dapD NC_008435.1 721484 722329 D catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 721484..722329 Rhodopseudomonas palustris BisA53 4357776 YP_779590.1 CDS RPE_0652 NC_008435.1 722310 722858 D PFAM: protein of unknown function DUF805; KEGG: rpc:RPC_0810 protein of unknown function DUF805; hypothetical protein 722310..722858 Rhodopseudomonas palustris BisA53 4357777 YP_779591.1 CDS RPE_0653 NC_008435.1 722874 724037 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 722874..724037 Rhodopseudomonas palustris BisA53 4357778 YP_779592.1 CDS truA NC_008435.1 724188 724928 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(724188..724928) Rhodopseudomonas palustris BisA53 4357779 YP_779593.1 CDS fmt NC_008435.1 725097 726080 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(725097..726080) Rhodopseudomonas palustris BisA53 4357780 YP_779594.1 CDS def NC_008435.1 726112 726654 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(726112..726654) Rhodopseudomonas palustris BisA53 4357781 YP_779595.1 CDS RPE_0657 NC_008435.1 726840 728027 D PFAM: protein of unknown function DUF195; KEGG: rpc:RPC_0802 protein of unknown function DUF195; hypothetical protein 726840..728027 Rhodopseudomonas palustris BisA53 4357782 YP_779596.1 CDS RPE_0658 NC_008435.1 728031 729056 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpd:RPD_4335 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase complement(728031..729056) Rhodopseudomonas palustris BisA53 4357783 YP_779597.1 CDS RPE_0659 NC_008435.1 729053 729859 R PFAM: protein of unknown function DUF1295; KEGG: rpd:RPD_4336 protein of unknown function DUF1295; hypothetical protein complement(729053..729859) Rhodopseudomonas palustris BisA53 4357784 YP_779598.1 CDS RPE_0660 NC_008435.1 730014 730994 D KEGG: rpc:RPC_0801 hypothetical protein; hypothetical protein 730014..730994 Rhodopseudomonas palustris BisA53 4357785 YP_779599.1 CDS RPE_0661 NC_008435.1 730998 732023 D PFAM: OmpA/MotB domain protein; KEGG: rpc:RPC_0800 OmpA/MotB; hypothetical protein 730998..732023 Rhodopseudomonas palustris BisA53 4357786 YP_779600.1 CDS RPE_0662 NC_008435.1 732183 732677 D PFAM: GCN5-related N-acetyltransferase; KEGG: rpc:RPC_0799 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 732183..732677 Rhodopseudomonas palustris BisA53 4357787 YP_779601.1 CDS RPE_0663 NC_008435.1 732686 732913 D KEGG: rpc:RPC_0798 hypothetical protein; hypothetical protein 732686..732913 Rhodopseudomonas palustris BisA53 4357788 YP_779602.1 CDS RPE_0664 NC_008435.1 732922 734829 R KEGG: rpc:RPC_0797 ABC transporter, ATP-binding/permease protein; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid ABC transporter ATPase/inner membrane protein complement(732922..734829) Rhodopseudomonas palustris BisA53 4357789 YP_779603.1 CDS rpmE NC_008435.1 734998 735219 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 734998..735219 Rhodopseudomonas palustris BisA53 4357790 YP_779604.1 CDS RPE_0666 NC_008435.1 735308 735823 R PFAM: protein of unknown function DUF1465; KEGG: rpc:RPC_0792 protein of unknown function DUF1465; hypothetical protein complement(735308..735823) Rhodopseudomonas palustris BisA53 4358293 YP_779605.1 CDS RPE_0667 NC_008435.1 736211 736408 R PFAM: protein of unknown function DUF1192; KEGG: rpc:RPC_0791 protein of unknown function DUF1192; hypothetical protein complement(736211..736408) Rhodopseudomonas palustris BisA53 4358294 YP_779606.1 CDS RPE_0668 NC_008435.1 736512 737510 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpa:RPA0915 putative NADPH quinone oxidoreductase; alcohol dehydrogenase 736512..737510 Rhodopseudomonas palustris BisA53 4358295 YP_779607.1 CDS RPE_0669 NC_008435.1 737727 740603 D KEGG: rpc:RPC_0789 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 737727..740603 Rhodopseudomonas palustris BisA53 4358296 YP_779608.1 CDS RPE_0670 NC_008435.1 740646 741233 R PFAM: transcriptional regulator PadR family protein; KEGG: bja:bll1156 transcriptional regulatory protein; PadR-like family transcriptional regulator complement(740646..741233) Rhodopseudomonas palustris BisA53 4358297 YP_779609.1 CDS RPE_0671 NC_008435.1 741369 741794 D KEGG: rpb:RPB_4607 hypothetical protein; hypothetical protein 741369..741794 Rhodopseudomonas palustris BisA53 4358298 YP_779610.1 CDS RPE_0672 NC_008435.1 741917 743707 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rpc:RPC_0737 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 741917..743707 Rhodopseudomonas palustris BisA53 4358299 YP_779611.1 CDS RPE_0673 NC_008435.1 743876 745084 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 743876..745084 Rhodopseudomonas palustris BisA53 4358300 YP_779612.1 CDS RPE_0674 NC_008435.1 745281 747497 D PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: rpb:RPB_4604 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase 745281..747497 Rhodopseudomonas palustris BisA53 4358301 YP_779613.1 CDS RPE_0675 NC_008435.1 747866 748480 R PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: rpa:RPA0820 putative glutathionine S-transferase; glutathione S-transferase complement(747866..748480) Rhodopseudomonas palustris BisA53 4358302 YP_779614.1 CDS RPE_0676 NC_008435.1 748593 749087 D PFAM: regulatory protein, MarR; KEGG: rpc:RPC_0733 transcriptional regulator, MarR family; MarR family transcriptional regulator 748593..749087 Rhodopseudomonas palustris BisA53 4358303 YP_779615.1 CDS RPE_0677 NC_008435.1 749187 750557 D TIGRFAM: glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase, GCS2; KEGG: rpc:RPC_0732 glutamate--cysteine ligase; glutamate--cysteine ligase 749187..750557 Rhodopseudomonas palustris BisA53 4358304 YP_779616.1 CDS RPE_0678 NC_008435.1 750711 751298 D KEGG: rpc:RPC_0731 apple; hypothetical protein 750711..751298 Rhodopseudomonas palustris BisA53 4358305 YP_779617.1 CDS RPE_0679 NC_008435.1 751533 752945 D PFAM: Integrase, catalytic region; KEGG: sme:SMb20905 putative transposase protein; integrase catalytic subunit 751533..752945 Rhodopseudomonas palustris BisA53 4358306 YP_779618.1 CDS RPE_0680 NC_008435.1 753450 754865 D KEGG: rfr:Rfer_1821 transcriptional regulator, XRE family; hypothetical protein 753450..754865 Rhodopseudomonas palustris BisA53 4358307 YP_779619.1 CDS RPE_0681 NC_008435.1 755665 756006 R KEGG: rpc:RPC_0759 hypothetical protein; hypothetical protein complement(755665..756006) Rhodopseudomonas palustris BisA53 4358308 YP_779620.1 CDS gltD NC_008435.1 756363 757817 R glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta complement(756363..757817) Rhodopseudomonas palustris BisA53 4358309 YP_779621.1 CDS RPE_0683 NC_008435.1 758064 762833 R PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rpc:RPC_0761 glutamate synthase (ferredoxin); glutamate synthase ferredoxin subunit complement(758064..762833) Rhodopseudomonas palustris BisA53 4358310 YP_779622.1 CDS RPE_0684 NC_008435.1 763247 763948 D KEGG: rpc:RPC_0762 hypothetical protein; hypothetical protein 763247..763948 Rhodopseudomonas palustris BisA53 4358608 YP_779623.1 CDS RPE_0685 NC_008435.1 764052 764522 R PFAM: heat shock protein Hsp20; KEGG: rpb:RPB_4533 heat shock protein HSP20; heat shock protein Hsp20 complement(764052..764522) Rhodopseudomonas palustris BisA53 4358609 YP_779624.1 CDS RPE_0686 NC_008435.1 764735 765682 D PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_0764 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 764735..765682 Rhodopseudomonas palustris BisA53 4358610 YP_779625.1 CDS RPE_0687 NC_008435.1 765855 766730 D TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: bja:blr1499 UTP--glucose-1-phosphate uridylyltransferase; UTP-glucose-1-phosphate uridylyltransferase 765855..766730 Rhodopseudomonas palustris BisA53 4358611 YP_779626.1 CDS RPE_0688 NC_008435.1 766763 768283 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_0766 diguanylate cyclase (GGDEF domain); diguanylate cyclase complement(766763..768283) Rhodopseudomonas palustris BisA53 4358612 YP_779627.1 CDS RPE_0689 NC_008435.1 768480 768746 D KEGG: rpc:RPC_0767 hypothetical protein; hypothetical protein 768480..768746 Rhodopseudomonas palustris BisA53 4358613 YP_779628.1 CDS RPE_0690 NC_008435.1 768857 769267 D KEGG: nha:Nham_2499 ISGsu3, transposase; ISGsu3, transposase 768857..769267 Rhodopseudomonas palustris BisA53 4358614 YP_779629.1 CDS RPE_0691 NC_008435.1 769677 770417 D KEGG: mlo:mll9642 hypothetical protein; hypothetical protein 769677..770417 Rhodopseudomonas palustris BisA53 4358615 YP_779630.1 CDS RPE_0693 NC_008435.1 771327 771725 D KEGG: nha:Nham_3654 transposase, IS4; hypothetical protein 771327..771725 Rhodopseudomonas palustris BisA53 4358617 YP_779631.1 CDS RPE_0694 NC_008435.1 771722 772741 R KEGG: rpd:RPD_0866 hypothetical protein; hypothetical protein complement(771722..772741) Rhodopseudomonas palustris BisA53 4358618 YP_779632.1 CDS RPE_0695 NC_008435.1 772847 774535 R KEGG: rpc:RPC_0768 hypothetical protein; hypothetical protein complement(772847..774535) Rhodopseudomonas palustris BisA53 4358619 YP_779633.1 CDS RPE_0696 NC_008435.1 774749 775762 D KEGG: rpc:RPC_0769 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 774749..775762 Rhodopseudomonas palustris BisA53 4358620 YP_779634.1 CDS RPE_0697 NC_008435.1 775980 777350 R PFAM: major facilitator superfamily MFS_1; KEGG: rpd:RPD_0083 major facilitator superfamily MFS_1; major facilitator transporter complement(775980..777350) Rhodopseudomonas palustris BisA53 4358621 YP_779635.1 CDS RPE_0698 NC_008435.1 777406 779058 R KEGG: rpc:RPC_0771 hypothetical protein; hypothetical protein complement(777406..779058) Rhodopseudomonas palustris BisA53 4358622 YP_779636.1 CDS RPE_0699 NC_008435.1 779209 779784 R PFAM: filamentation induced by cAMP protein Fic; KEGG: rpb:RPB_1983 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic complement(779209..779784) Rhodopseudomonas palustris BisA53 4358623 YP_779637.1 CDS RPE_0700 NC_008435.1 779796 780011 R hypothetical protein complement(779796..780011) Rhodopseudomonas palustris BisA53 4358624 YP_779638.1 CDS RPE_0701 NC_008435.1 780050 781453 R TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rpc:RPC_0775 lytic murein transglycosylase; lytic murein transglycosylase complement(780050..781453) Rhodopseudomonas palustris BisA53 4359698 YP_779639.1 CDS RPE_0702 NC_008435.1 781573 782202 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rpc:RPC_0776 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 781573..782202 Rhodopseudomonas palustris BisA53 4359699 YP_779640.1 CDS RPE_0703 NC_008435.1 782206 782955 R PFAM: protein of unknown function DUF81; KEGG: rpb:RPB_4519 protein of unknown function DUF81; hypothetical protein complement(782206..782955) Rhodopseudomonas palustris BisA53 4359700 YP_779641.1 CDS RPE_0704 NC_008435.1 783003 783434 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rpd:RPD_4360 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(783003..783434) Rhodopseudomonas palustris BisA53 4359701 YP_779642.1 CDS RPE_0705 NC_008435.1 783499 784089 D PFAM: regulatory protein, TetR; KEGG: rpd:RPD_4359 regulatory protein, TetR; TetR family transcriptional regulator 783499..784089 Rhodopseudomonas palustris BisA53 4359702 YP_779643.1 CDS RPE_0706 NC_008435.1 784109 784888 R TIGRFAM: histidinol-phosphate phosphatase, putative; PFAM: inositol monophosphatase; KEGG: rpd:RPD_4358 histidinol-phosphate phosphatase, putative, inositol monophosphatase; histidinol-phosphate phosphatase complement(784109..784888) Rhodopseudomonas palustris BisA53 4359703 YP_779644.1 CDS RPE_0707 NC_008435.1 785437 786324 R PFAM: N-formylglutamate amidohydrolase; KEGG: rpc:RPC_0780 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase complement(785437..786324) Rhodopseudomonas palustris BisA53 4359704 YP_779645.1 CDS RPE_0708 NC_008435.1 786618 786977 D PFAM: response regulator receiver; KEGG: rpc:RPC_0781 response regulator receiver domain protein (CheY-like); response regulator receiver protein 786618..786977 Rhodopseudomonas palustris BisA53 4359705 YP_779646.1 CDS RPE_0709 NC_008435.1 787291 788079 D KEGG: rpc:RPC_0782 hypothetical protein; hypothetical protein 787291..788079 Rhodopseudomonas palustris BisA53 4359707 YP_779647.1 CDS RPE_0710 NC_008435.1 788449 789048 R stationary phase protein that binds TrpR repressor; TrpR binding protein WrbA complement(788449..789048) Rhodopseudomonas palustris BisA53 4359708 YP_779648.1 CDS RPE_0711 NC_008435.1 789209 789907 R PFAM: Pirin domain protein domain protein; KEGG: rpd:RPD_4351 pirin-like; pirin domain-containing protein complement(789209..789907) Rhodopseudomonas palustris BisA53 4359709 YP_779649.1 CDS RPE_0712 NC_008435.1 790025 790948 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpa:RPA0911 transcriptional regulator, LysR family; LysR family transcriptional regulator 790025..790948 Rhodopseudomonas palustris BisA53 4359710 YP_779650.1 CDS RPE_0713 NC_008435.1 790935 791786 R KEGG: rpc:RPC_0787 hypothetical protein; hypothetical protein complement(790935..791786) Rhodopseudomonas palustris BisA53 4359711 YP_779651.1 CDS RPE_0714 NC_008435.1 791912 792541 D PFAM: protein of unknown function DUF179; KEGG: rpc:RPC_0788 protein of unknown function DUF179; hypothetical protein 791912..792541 Rhodopseudomonas palustris BisA53 4359712 YP_779652.1 CDS RPE_0715 NC_008435.1 792963 796250 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: rpc:RPC_0738 Sel1; Sel1 domain-containing protein 792963..796250 Rhodopseudomonas palustris BisA53 4359713 YP_779653.1 CDS RPE_0716 NC_008435.1 796419 797345 D PFAM: protein of unknown function DUF81; KEGG: rpc:RPC_0741 protein of unknown function DUF81; hypothetical protein 796419..797345 Rhodopseudomonas palustris BisA53 4359714 YP_779654.1 CDS RPE_0717 NC_008435.1 797342 798133 D TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_0742 hypothetical protein; hypothetical protein 797342..798133 Rhodopseudomonas palustris BisA53 4358190 YP_779655.1 CDS RPE_0718 NC_008435.1 798270 799031 R PFAM: carbonic anhydrase; KEGG: rpc:RPC_0758 carbonate dehydratase; carbonate dehydratase complement(798270..799031) Rhodopseudomonas palustris BisA53 4358191 YP_779656.1 CDS RPE_0719 NC_008435.1 799127 799753 R PFAM: peptidase S24, S26A and S26B; KEGG: rpc:RPC_0757 putative phage repressor; putative phage repressor complement(799127..799753) Rhodopseudomonas palustris BisA53 4358192 YP_779657.1 CDS RPE_0720 NC_008435.1 800073 800417 D PFAM: protein of unknown function DUF952; KEGG: rpc:RPC_0756 protein of unknown function DUF952; hypothetical protein 800073..800417 Rhodopseudomonas palustris BisA53 4358193 YP_779658.1 CDS RPE_0721 NC_008435.1 800414 801508 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 800414..801508 Rhodopseudomonas palustris BisA53 4358194 YP_779659.1 CDS RPE_0722 NC_008435.1 801860 802594 R PFAM: beta-lactamase domain protein; KEGG: rpc:RPC_0754 beta-lactamase-like; beta-lactamase domain-containing protein complement(801860..802594) Rhodopseudomonas palustris BisA53 4358195 YP_779660.1 CDS RPE_0723 NC_008435.1 802636 803976 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rpd:RPD_0791 MATE efflux family protein; MATE efflux family protein complement(802636..803976) Rhodopseudomonas palustris BisA53 4358196 YP_779661.1 CDS RPE_0724 NC_008435.1 803996 804295 R KEGG: rpc:RPC_0752 hypothetical protein; hypothetical protein complement(803996..804295) Rhodopseudomonas palustris BisA53 4358197 YP_779662.1 CDS RPE_0725 NC_008435.1 804532 806295 R catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase complement(804532..806295) Rhodopseudomonas palustris BisA53 4358198 YP_779663.1 CDS RPE_0726 NC_008435.1 806292 807332 R KEGG: rpc:RPC_0750 putative mRNA 3-end processing factor; putative mRNA 3-end processing factor complement(806292..807332) Rhodopseudomonas palustris BisA53 4358199 YP_779664.1 CDS RPE_0727 NC_008435.1 807404 808330 D PFAM: Tetratricopeptide TPR_2 repeat protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_0749 tetratricopeptide TPR_2; type 11 methyltransferase 807404..808330 Rhodopseudomonas palustris BisA53 4358200 YP_779665.1 CDS RPE_0728 NC_008435.1 808414 809754 R PFAM: porin; KEGG: rpc:RPC_0748 putative outer membrane protein; porin complement(808414..809754) Rhodopseudomonas palustris BisA53 4358201 YP_779666.1 CDS RPE_0729 NC_008435.1 810088 811308 D PFAM: Extracellular ligand-binding receptor; KEGG: rpd:RPD_0796 extracellular ligand-binding receptor; extracellular ligand-binding receptor 810088..811308 Rhodopseudomonas palustris BisA53 4358202 YP_779667.1 CDS RPE_0730 NC_008435.1 811837 814251 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; KEGG: rpc:RPC_0747 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 811837..814251 Rhodopseudomonas palustris BisA53 4358203 YP_779668.1 CDS RPE_0731 NC_008435.1 814254 814967 D KEGG: rpc:RPC_0746 hypothetical protein; hypothetical protein 814254..814967 Rhodopseudomonas palustris BisA53 4358204 YP_779669.1 CDS RPE_0732 NC_008435.1 815142 816059 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpa:RPA0809 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(815142..816059) Rhodopseudomonas palustris BisA53 4358205 YP_779670.1 CDS RPE_0733 NC_008435.1 816122 817048 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: rpc:RPC_0744 protein of unknown function DUF6, transmembrane; hypothetical protein 816122..817048 Rhodopseudomonas palustris BisA53 4358206 YP_779671.1 CDS RPE_0734 NC_008435.1 817058 817843 D KEGG: rpc:RPC_0743 hypothetical protein; hypothetical protein 817058..817843 Rhodopseudomonas palustris BisA53 4358346 YP_779672.1 CDS RPE_0735 NC_008435.1 817964 818230 R KEGG: rpd:RPD_1001 hypothetical protein; hypothetical protein complement(817964..818230) Rhodopseudomonas palustris BisA53 4358347 YP_779673.1 CDS lysK NC_008435.1 818529 820169 R class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase complement(818529..820169) Rhodopseudomonas palustris BisA53 4358348 YP_779674.1 CDS RPE_0737 NC_008435.1 820211 821134 R PFAM: extracellular solute-binding protein, family 3; KEGG: rpc:RPC_0729 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(820211..821134) Rhodopseudomonas palustris BisA53 4358349 YP_779675.1 CDS RPE_0738 NC_008435.1 821213 823153 D PFAM: glycosyl transferase, family 2; KEGG: rpb:RPB_0886 glycosyl transferases; glycosyl transferase family protein 821213..823153 Rhodopseudomonas palustris BisA53 4358350 YP_779676.1 CDS RPE_0739 NC_008435.1 823137 823730 R PFAM: electron transport protein SCO1/SenC; KEGG: rpc:RPC_0721 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC complement(823137..823730) Rhodopseudomonas palustris BisA53 4358351 YP_779677.1 CDS RPE_0740 NC_008435.1 823863 824321 R KEGG: rpc:RPC_0720 hypothetical protein; hypothetical protein complement(823863..824321) Rhodopseudomonas palustris BisA53 4358352 YP_779678.1 CDS RPE_0741 NC_008435.1 824859 825233 D KEGG: rpc:RPC_0718 hypothetical protein; hypothetical protein 824859..825233 Rhodopseudomonas palustris BisA53 4358353 YP_779679.1 CDS RPE_0742 NC_008435.1 825502 826617 D catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 825502..826617 Rhodopseudomonas palustris BisA53 4358354 YP_779680.1 CDS RPE_0743 NC_008435.1 826639 827208 R KEGG: nha:Nham_0216 hypothetical protein; hypothetical protein complement(826639..827208) Rhodopseudomonas palustris BisA53 4358355 YP_779681.1 CDS RPE_0744 NC_008435.1 827420 828322 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpb:RPB_0879 transcriptional regulator, LysR family; LysR family transcriptional regulator 827420..828322 Rhodopseudomonas palustris BisA53 4358356 YP_779682.1 CDS RPE_0745 NC_008435.1 828578 829693 D PFAM: protein of unknown function DUF453; KEGG: rpb:RPB_0878 protein of unknown function DUF453; hypothetical protein 828578..829693 Rhodopseudomonas palustris BisA53 4358357 YP_779683.1 CDS RPE_0746 NC_008435.1 829690 830718 D PFAM: amidohydrolase 2; KEGG: rpb:RPB_0877 amidohydrolase 2; amidohydrolase 2 829690..830718 Rhodopseudomonas palustris BisA53 4358358 YP_779684.1 CDS RPE_0747 NC_008435.1 830721 831416 D PFAM: Dimethylmenaquinone methyltransferase; KEGG: rpb:RPB_0876 dimethylmenaquinone methyltransferase; hypothetical protein 830721..831416 Rhodopseudomonas palustris BisA53 4358359 YP_779685.1 CDS RPE_0748 NC_008435.1 831422 832351 D KEGG: rpa:RPA4699 possible dehydrogenase; putative dehydrogenase 831422..832351 Rhodopseudomonas palustris BisA53 4358360 YP_779686.1 CDS RPE_0749 NC_008435.1 832578 833492 D PFAM: amidohydrolase 2; KEGG: rpb:RPB_0874 amidohydrolase 2; amidohydrolase 2 832578..833492 Rhodopseudomonas palustris BisA53 4358361 YP_779687.1 CDS RPE_0750 NC_008435.1 833722 834111 D extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit alpha 833722..834111 Rhodopseudomonas palustris BisA53 4358362 YP_779688.1 CDS RPE_0751 NC_008435.1 834111 834965 D extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit beta 834111..834965 Rhodopseudomonas palustris BisA53 4358363 YP_779689.1 CDS RPE_0752 NC_008435.1 834967 835923 D PFAM: oxidoreductase domain protein; KEGG: rpa:RPA4703 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase; oxidoreductase domain-containing protein 834967..835923 Rhodopseudomonas palustris BisA53 4357844 YP_779690.1 CDS RPE_0753 NC_008435.1 836020 836400 D KEGG: rpc:RPC_0717 hypothetical protein; hypothetical protein 836020..836400 Rhodopseudomonas palustris BisA53 4357845 YP_779691.1 CDS RPE_0754 NC_008435.1 836544 836945 D PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: rpc:RPC_0716 phosphoribosyl-ATP pyrophosphohydrolase; phosphoribosyl-ATP pyrophosphohydrolase 836544..836945 Rhodopseudomonas palustris BisA53 4357846 YP_779692.1 CDS RPE_0755 NC_008435.1 836970 837587 D KEGG: rpa:RPA4706 DedA family; DedA family protein 836970..837587 Rhodopseudomonas palustris BisA53 4357847 YP_779693.1 CDS RPE_0756 NC_008435.1 837643 838296 D KEGG: rpc:RPC_0714 hypothetical protein; hypothetical protein 837643..838296 Rhodopseudomonas palustris BisA53 4357848 YP_779694.1 CDS RPE_0757 NC_008435.1 838448 839416 D PFAM: 2-nitropropane dioxygenase, NPD; KEGG: rpd:RPD_0976 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 838448..839416 Rhodopseudomonas palustris BisA53 4357849 YP_779695.1 CDS RPE_0758 NC_008435.1 839425 840198 D KEGG: rpc:RPC_0712 hypothetical protein; hypothetical protein 839425..840198 Rhodopseudomonas palustris BisA53 4357850 YP_779696.1 CDS RPE_0759 NC_008435.1 840314 840571 D KEGG: rpc:RPC_0711 hypothetical protein; hypothetical protein 840314..840571 Rhodopseudomonas palustris BisA53 4357851 YP_779697.1 CDS RPE_0760 NC_008435.1 840755 841468 D KEGG: rpc:RPC_0710 hypothetical protein; hypothetical protein 840755..841468 Rhodopseudomonas palustris BisA53 4357852 YP_779698.1 CDS RPE_0761 NC_008435.1 841626 842546 D KEGG: rpc:RPC_0709 hypothetical protein; hypothetical protein 841626..842546 Rhodopseudomonas palustris BisA53 4357853 YP_779699.1 CDS RPE_0762 NC_008435.1 842568 843677 R KEGG: rpc:RPC_0708 molybdate ABC transporter, ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; molybdate ABC transporter ATP-binding protein complement(842568..843677) Rhodopseudomonas palustris BisA53 4357854 YP_779700.1 CDS RPE_0763 NC_008435.1 843674 844360 R TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_0707 molybdate ABC transporter, permease protein; molybdate ABC transporter permease complement(843674..844360) Rhodopseudomonas palustris BisA53 4357855 YP_779701.1 CDS RPE_0764 NC_008435.1 844552 845325 R TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: rpa:RPA4717 molybdate transport system substrate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein complement(844552..845325) Rhodopseudomonas palustris BisA53 4357856 YP_779702.1 CDS RPE_0765 NC_008435.1 845341 846132 R TIGRFAM: molybdate transport repressor, ModE; Molybdenum-pterin binding; PFAM: regulatory protein, LysR; TOBE domain protein; KEGG: rpc:RPC_0705 transcriptional regulator, ModE family; ModE family transcriptional regulator complement(845341..846132) Rhodopseudomonas palustris BisA53 4357857 YP_779703.1 CDS RPE_0766 NC_008435.1 846515 851584 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rpc:RPC_0704 pyruvate flavodoxin/ferredoxin oxidoreductase-like; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 846515..851584 Rhodopseudomonas palustris BisA53 4357858 YP_779704.1 CDS RPE_0767 NC_008435.1 851581 854418 D undetermined function; putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase 851581..854418 Rhodopseudomonas palustris BisA53 4357859 YP_779705.1 CDS RPE_0768 NC_008435.1 854576 855226 R PFAM: Collagen triple helix repeat; KEGG: rpb:RPB_1937 collagen triple helix repeat; triple helix repeat-containing collagen complement(854576..855226) Rhodopseudomonas palustris BisA53 4357860 YP_779706.1 CDS RPE_0769 NC_008435.1 855398 856369 D PFAM: PfkB domain protein; KEGG: rpc:RPC_0700 PfkB; ribokinase-like domain-containing protein 855398..856369 Rhodopseudomonas palustris BisA53 4358850 YP_779707.1 CDS RPE_0770 NC_008435.1 856573 857937 D catalyzes the formation of L-tryptophan from indole and L-serine; tryptophan synthase subunit beta 856573..857937 Rhodopseudomonas palustris BisA53 4358851 YP_779708.1 CDS RPE_0771 NC_008435.1 858216 860909 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bja:blr6465 putative steroid monooxygenase; alpha/beta hydrolase domain-containing protein 858216..860909 Rhodopseudomonas palustris BisA53 4358852 YP_779709.1 CDS flgL NC_008435.1 867337 868248 R with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL complement(867337..868248) Rhodopseudomonas palustris BisA53 4358858 YP_779710.1 CDS RPE_0774 NC_008435.1 868262 870031 R TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rpc:RPC_0874 flagellar hook-associated protein; flagellar hook-associated protein FlgK complement(868262..870031) Rhodopseudomonas palustris BisA53 4358859 YP_779711.1 CDS RPE_0775 NC_008435.1 870051 870506 R KEGG: rpc:RPC_0873 hypothetical protein; hypothetical protein complement(870051..870506) Rhodopseudomonas palustris BisA53 4358860 YP_779712.1 CDS RPE_0776 NC_008435.1 870508 870789 R KEGG: rpc:RPC_0872 hypothetical protein; hypothetical protein complement(870508..870789) Rhodopseudomonas palustris BisA53 4358861 YP_779713.1 CDS flgE NC_008435.1 870793 872058 R the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE complement(870793..872058) Rhodopseudomonas palustris BisA53 4358862 YP_779714.1 CDS RPE_0778 NC_008435.1 872078 872743 R PFAM: flagellar hook capping protein; KEGG: rpc:RPC_0870 flagellar hook capping protein; flagellar hook capping protein complement(872078..872743) Rhodopseudomonas palustris BisA53 4358863 YP_779715.1 CDS RPE_0779 NC_008435.1 872996 873337 R KEGG: rpb:RPB_0763 hypothetical protein; hypothetical protein complement(872996..873337) Rhodopseudomonas palustris BisA53 4358864 YP_779716.1 CDS RPE_0780 NC_008435.1 873453 873857 R KEGG: rpc:RPC_0868 flagellar protein FliS; flagellar protein FliS complement(873453..873857) Rhodopseudomonas palustris BisA53 4358865 YP_779717.1 CDS RPE_0781 NC_008435.1 873860 875563 R PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: rpc:RPC_0867 flagellar hook-associated 2-like; flagellar hook-associated 2 domain-containing protein complement(873860..875563) Rhodopseudomonas palustris BisA53 4358866 YP_779718.1 CDS RPE_0782 NC_008435.1 875630 876460 R PFAM: flagellin domain protein; KEGG: rpc:RPC_0866 flagellin-like; flagellin domain-containing protein complement(875630..876460) Rhodopseudomonas palustris BisA53 4358867 YP_779719.1 CDS RPE_0783 NC_008435.1 876605 877288 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(876605..877288) Rhodopseudomonas palustris BisA53 4358868 YP_779720.1 CDS RPE_0784 NC_008435.1 877602 877856 D hypothetical protein 877602..877856 Rhodopseudomonas palustris BisA53 4358869 YP_779721.1 CDS RPE_0785 NC_008435.1 877931 879355 D KEGG: rpc:RPC_0863 hypothetical protein; hypothetical protein 877931..879355 Rhodopseudomonas palustris BisA53 4358870 YP_779722.1 CDS RPE_0786 NC_008435.1 879886 880443 D PFAM: Disulphide bond formation protein DsbB; KEGG: rpc:RPC_0627 disulphide bond formation protein DsbB; hypothetical protein 879886..880443 Rhodopseudomonas palustris BisA53 4358872 YP_779723.1 CDS RPE_0787 NC_008435.1 880689 881207 D KEGG: rpc:RPC_0625 hypothetical protein; hypothetical protein 880689..881207 Rhodopseudomonas palustris BisA53 4358873 YP_779724.1 CDS RPE_0788 NC_008435.1 881245 881628 D PFAM: LrgA family protein; KEGG: rpc:RPC_0624 LrgA; LrgA family protein 881245..881628 Rhodopseudomonas palustris BisA53 4358874 YP_779725.1 CDS RPE_0789 NC_008435.1 881625 882347 D PFAM: LrgB family protein; KEGG: rpa:RPA0545 hypothetical protein; LrgB-like protein 881625..882347 Rhodopseudomonas palustris BisA53 4358875 YP_779726.1 CDS RPE_0790 NC_008435.1 882466 883140 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: DSBA oxidoreductase; KEGG: rpc:RPC_0622 twin-arginine translocation pathway signal; hypothetical protein 882466..883140 Rhodopseudomonas palustris BisA53 4358876 YP_779727.1 CDS RPE_0791 NC_008435.1 883181 883399 R KEGG: rpc:RPC_0621 hypothetical protein; hypothetical protein complement(883181..883399) Rhodopseudomonas palustris BisA53 4358877 YP_779728.1 CDS RPE_0792 NC_008435.1 883535 884029 D KEGG: rpd:RPD_0334 hypothetical protein; hypothetical protein 883535..884029 Rhodopseudomonas palustris BisA53 4358878 YP_779729.1 CDS RPE_0793 NC_008435.1 884050 885117 D PFAM: protein of unknown function UPF0118; KEGG: rpc:RPC_2083 protein of unknown function UPF0118; hypothetical protein 884050..885117 Rhodopseudomonas palustris BisA53 4359610 YP_779730.1 CDS RPE_0794 NC_008435.1 885135 885791 R TIGRFAM: anti-sigma factor, putative, ChrR family; KEGG: rpb:RPB_0487 anti-sigm factor, ChrR; anti-ECFsigma factor ChrR complement(885135..885791) Rhodopseudomonas palustris BisA53 4359611 YP_779731.1 CDS RPE_0795 NC_008435.1 885788 886384 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(885788..886384) Rhodopseudomonas palustris BisA53 4359612 YP_779732.1 CDS RPE_0796 NC_008435.1 886564 887166 R PFAM: GTP cyclohydrolase I; KEGG: mag:amb4223 GTP cyclohydrolase I; GTP cyclohydrolase I complement(886564..887166) Rhodopseudomonas palustris BisA53 4359613 YP_779733.1 CDS RPE_0797 NC_008435.1 887876 889156 D KEGG: rpc:RPC_1052 citrate transporter; citrate transporter 887876..889156 Rhodopseudomonas palustris BisA53 4359614 YP_779734.1 CDS RPE_0798 NC_008435.1 889445 890527 R KEGG: rru:Rru_A1257 hypothetical protein; hypothetical protein complement(889445..890527) Rhodopseudomonas palustris BisA53 4359615 YP_779735.1 CDS RPE_0799 NC_008435.1 890568 891125 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: rpc:RPC_0613 HNH endonuclease; HNH endonuclease complement(890568..891125) Rhodopseudomonas palustris BisA53 4359616 YP_779736.1 CDS RPE_0800 NC_008435.1 891310 892779 R catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase complement(891310..892779) Rhodopseudomonas palustris BisA53 4359617 YP_779737.1 CDS glgC NC_008435.1 892776 894038 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase complement(892776..894038) Rhodopseudomonas palustris BisA53 4359618 YP_779738.1 CDS RPE_0802 NC_008435.1 894137 894397 D hypothetical protein 894137..894397 Rhodopseudomonas palustris BisA53 4359619 YP_779739.1 CDS RPE_0803 NC_008435.1 894414 895403 R PFAM: CBS domain containing protein; KEGG: rpc:RPC_0610 putative signal-transduction protein with CBS domains; signal-transduction protein complement(894414..895403) Rhodopseudomonas palustris BisA53 4359620 YP_779740.1 CDS RPE_0804 NC_008435.1 895679 897238 R PFAM: acetyl-CoA hydrolase/transferase; KEGG: rpd:RPD_0322 acetyl-CoA hydrolase; acetyl-CoA hydrolase complement(895679..897238) Rhodopseudomonas palustris BisA53 4359621 YP_779741.1 CDS RPE_0805 NC_008435.1 897557 898531 R KEGG: rpc:RPC_2939 alpha/beta hydrolase fold; hypothetical protein complement(897557..898531) Rhodopseudomonas palustris BisA53 4359622 YP_779742.1 CDS RPE_0806 NC_008435.1 899057 900220 D PFAM: glycosyl transferase, group 1; KEGG: atc:AGR_L_3095 hypothetical protein; group 1 glycosyl transferase 899057..900220 Rhodopseudomonas palustris BisA53 4359623 YP_779743.1 CDS RPE_0807 NC_008435.1 900284 902530 D PFAM: lipopolysaccharide biosynthesis; KEGG: rru:Rru_A1490 protein-tyrosine kinase; lipopolysaccharide biosynthesis 900284..902530 Rhodopseudomonas palustris BisA53 4359624 YP_779744.1 CDS RPE_0808 NC_008435.1 902530 903684 D PFAM: glycosyl transferase, group 1; KEGG: ana:alr3699 similar to glycosyltransferase; group 1 glycosyl transferase 902530..903684 Rhodopseudomonas palustris BisA53 4359625 YP_779745.1 CDS RPE_0809 NC_008435.1 903739 904761 D PFAM: polysaccharide deacetylase; KEGG: bja:bll1083 hypothetical protein; polysaccharide deacetylase 903739..904761 Rhodopseudomonas palustris BisA53 4359626 YP_779746.1 CDS RPE_0810 NC_008435.1 904754 905908 D PFAM: glycosyl transferase, group 1; KEGG: ava:Ava_1365 glycosyl transferase, group 1; group 1 glycosyl transferase 904754..905908 Rhodopseudomonas palustris BisA53 4359627 YP_779747.1 CDS RPE_0811 NC_008435.1 906154 907185 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT0759 hypothetical protein; type 11 methyltransferase 906154..907185 Rhodopseudomonas palustris BisA53 4358968 YP_779748.1 CDS RPE_0812 NC_008435.1 907250 908680 D PFAM: polysaccharide biosynthesis protein; KEGG: mlo:mll5270 probable succinoglycan transport protein; polysaccharide biosynthesis protein 907250..908680 Rhodopseudomonas palustris BisA53 4358969 YP_779749.1 CDS RPE_0813 NC_008435.1 908720 909913 R PFAM: glycosyl transferase, group 1; KEGG: cvi:CV0817 probable glycosyltransferase; group 1 glycosyl transferase complement(908720..909913) Rhodopseudomonas palustris BisA53 4358970 YP_779750.1 CDS RPE_0814 NC_008435.1 909983 911299 D hypothetical protein 909983..911299 Rhodopseudomonas palustris BisA53 4358971 YP_779751.1 CDS RPE_0815 NC_008435.1 911442 911822 D KEGG: bja:blr7300 hypothetical protein; hypothetical protein 911442..911822 Rhodopseudomonas palustris BisA53 4358972 YP_779752.1 CDS RPE_0816 NC_008435.1 912085 912420 R KEGG: rpb:RPB_0453 hypothetical protein; hypothetical protein complement(912085..912420) Rhodopseudomonas palustris BisA53 4358974 YP_779753.1 CDS RPE_0817 NC_008435.1 912464 913447 D KEGG: rpc:RPC_0606 pseudouridine synthase, RluD; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 912464..913447 Rhodopseudomonas palustris BisA53 4358975 YP_779754.1 CDS RPE_0818 NC_008435.1 913665 914564 D binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 913665..914564 Rhodopseudomonas palustris BisA53 4358976 YP_779755.1 CDS RPE_0819 NC_008435.1 914762 916375 R PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase complement(914762..916375) Rhodopseudomonas palustris BisA53 4358977 YP_779756.1 CDS RPE_0820 NC_008435.1 916567 917304 R PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rpc:RPC_0598 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein complement(916567..917304) Rhodopseudomonas palustris BisA53 4358978 YP_779757.1 CDS RPE_0821 NC_008435.1 917504 918205 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpd:RPD_0367 response regulator receiver; two component transcriptional regulator 917504..918205 Rhodopseudomonas palustris BisA53 4358979 YP_779758.1 CDS RPE_0822 NC_008435.1 918272 920131 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_0596 periplasmic sensor signal transduction histidine kinase; sensor signal transduction histidine kinase 918272..920131 Rhodopseudomonas palustris BisA53 4358980 YP_779759.1 CDS RPE_0823 NC_008435.1 920128 920598 D KEGG: rpc:RPC_0595 HPr kinase; HPr kinase 920128..920598 Rhodopseudomonas palustris BisA53 4358981 YP_779760.1 CDS RPE_0824 NC_008435.1 920786 921187 D PFAM: PTS system fructose subfamily IIA component; KEGG: rpd:RPD_0370 PTS system fructose subfamily IIA component; PTS system fructose subfamily transporter subunit IIA 920786..921187 Rhodopseudomonas palustris BisA53 4358982 YP_779761.1 CDS RPE_0825 NC_008435.1 921220 921519 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: rpc:RPC_0593 HPrNtr; HPr family phosphocarrier protein 921220..921519 Rhodopseudomonas palustris BisA53 4358983 YP_779762.1 CDS RPE_0826 NC_008435.1 921516 923051 R KEGG: rpc:RPC_0592 hypothetical protein; hypothetical protein complement(921516..923051) Rhodopseudomonas palustris BisA53 4360183 YP_779763.1 CDS RPE_0827 NC_008435.1 923164 924975 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 923164..924975 Rhodopseudomonas palustris BisA53 4360184 YP_779764.1 CDS RPE_0828 NC_008435.1 925139 925438 R hypothetical protein complement(925139..925438) Rhodopseudomonas palustris BisA53 4360185 YP_779765.1 CDS RPE_0829 NC_008435.1 925700 925936 D KEGG: rpc:RPC_0587 hypothetical protein; hypothetical protein 925700..925936 Rhodopseudomonas palustris BisA53 4360186 YP_779766.1 CDS RPE_0830 NC_008435.1 925923 926912 D PFAM: alpha/beta hydrolase fold; KEGG: rpa:RPA0348 possible hydrolase; alpha/beta hydrolase fold protein 925923..926912 Rhodopseudomonas palustris BisA53 4360187 YP_779767.1 CDS RPE_0831 NC_008435.1 927666 929564 D TIGRFAM: cytochrome C family protein; KEGG: rpc:RPC_2960 cytochrome; cytochrome C family protein 927666..929564 Rhodopseudomonas palustris BisA53 4360188 YP_779768.1 CDS RPE_0832 NC_008435.1 929671 932052 D KEGG: rpc:RPC_2959 putative outer membrane protein precursor; putative outer membrane protein 929671..932052 Rhodopseudomonas palustris BisA53 4360189 YP_779769.1 CDS RPE_0833 NC_008435.1 932212 932493 D TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpc:RPC_2958 twin-arginine translocation pathway signal; hypothetical protein 932212..932493 Rhodopseudomonas palustris BisA53 4360190 YP_779770.1 CDS RPE_0834 NC_008435.1 932951 933778 D PFAM: porin; KEGG: rpa:RPA2815 possible outer membrane protein; porin 932951..933778 Rhodopseudomonas palustris BisA53 4360191 YP_779771.1 CDS RPE_0835 NC_008435.1 934094 936178 D PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; KEGG: rpd:RPD_3218 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 934094..936178 Rhodopseudomonas palustris BisA53 4360192 YP_779772.1 CDS RPE_0836 NC_008435.1 936329 937213 R KEGG: rpc:RPC_0877 ADP-ribosyl-(dinitrogen reductase) hydrolase; TIGRFAM: ADP-ribosyl-[dinitrogen reductase] hydrolase; PFAM: ADP-ribosylation/Crystallin J1; ADP-ribosyl-(dinitrogen reductase) hydrolase complement(936329..937213) Rhodopseudomonas palustris BisA53 4360193 YP_779773.1 CDS RPE_0837 NC_008435.1 937236 938069 R PFAM: Dinitrogenase reductase ADP-ribosyltransferase; KEGG: rpc:RPC_0878 NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase; NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase complement(937236..938069) Rhodopseudomonas palustris BisA53 4360194 YP_779774.1 CDS RPE_0838 NC_008435.1 938253 938978 D PFAM: glutamine amidotransferase class-I; KEGG: rpc:RPC_0879 glutamine amidotransferase class-I; glutamine amidotransferase 938253..938978 Rhodopseudomonas palustris BisA53 4360195 YP_779775.1 CDS RPE_0839 NC_008435.1 939143 939568 R KEGG: bja:bll6198 hypothetical protein; hypothetical protein complement(939143..939568) Rhodopseudomonas palustris BisA53 4360196 YP_779776.1 CDS RPE_0840 NC_008435.1 940000 940353 D KEGG: bja:blr6203 hypothetical protein; hypothetical protein 940000..940353 Rhodopseudomonas palustris BisA53 4360197 YP_779777.1 CDS RPE_0841 NC_008435.1 940363 940587 R KEGG: bja:bsl6204 hypothetical protein; hypothetical protein complement(940363..940587) Rhodopseudomonas palustris BisA53 4360198 YP_779778.1 CDS RPE_0842 NC_008435.1 940668 941528 R KEGG: bja:bll6205 hypothetical protein; hypothetical protein complement(940668..941528) Rhodopseudomonas palustris BisA53 4360199 YP_779779.1 CDS RPE_0843 NC_008435.1 941613 942812 R KEGG: rpc:RPC_0883 coenzyme PQQ biosynthesis protein E; TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; pyrroloquinoline quinone biosynthesis protein PqqE complement(941613..942812) Rhodopseudomonas palustris BisA53 4360200 YP_779780.1 CDS RPE_0844 NC_008435.1 942809 943138 R PFAM: coenzyme PQQ synthesis D; KEGG: rpd:RPD_2032 coenzyme PQQ synthesis D; coenzyme PQQ synthesis D complement(942809..943138) Rhodopseudomonas palustris BisA53 4358540 YP_779781.1 CDS RPE_0845 NC_008435.1 943148 943939 R Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC complement(943148..943939) Rhodopseudomonas palustris BisA53 4358541 YP_779782.1 CDS RPE_0846 NC_008435.1 943936 944919 R possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB complement(943936..944919) Rhodopseudomonas palustris BisA53 4358542 YP_779783.1 CDS RPE_0847 NC_008435.1 945443 947023 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 945443..947023 Rhodopseudomonas palustris BisA53 4358543 YP_779784.1 CDS RPE_0848 NC_008435.1 947075 948292 D PFAM: Extracellular ligand-binding receptor; KEGG: rpa:RPA2193 putative ABC transporter, perplasmic binding protein, branched chain amino acids; extracellular ligand-binding receptor 947075..948292 Rhodopseudomonas palustris BisA53 4358544 YP_779785.1 CDS RPE_0849 NC_008435.1 948436 949266 R KEGG: bja:blr6197 hypothetical protein; hypothetical protein complement(948436..949266) Rhodopseudomonas palustris BisA53 4358545 YP_779786.1 CDS RPE_0850 NC_008435.1 949319 950257 R PFAM: beta-lactamase domain protein; KEGG: bja:blr6196 hypothetical protein; beta-lactamase domain-containing protein complement(949319..950257) Rhodopseudomonas palustris BisA53 4358546 YP_779787.1 CDS RPE_0851 NC_008435.1 951019 952830 D PFAM: Pyrrolo-quinoline quinone; KEGG: bja:blr6213 methanol dehydrogenase large subunit-like protein; Pyrrolo-quinoline quinone 951019..952830 Rhodopseudomonas palustris BisA53 4358547 YP_779788.1 CDS RPE_0852 NC_008435.1 952992 953564 D KEGG: bja:blr6214 putative cytochrome c protein; hypothetical protein 952992..953564 Rhodopseudomonas palustris BisA53 4358548 YP_779789.1 CDS RPE_0853 NC_008435.1 953620 954549 D SMART: extracellular solute-binding protein, family 3; KEGG: bja:bll6195 putative methanol oxidation protein; extracellular solute-binding protein 953620..954549 Rhodopseudomonas palustris BisA53 4358549 YP_779790.1 CDS RPE_0854 NC_008435.1 954593 955225 D KEGG: bja:bll6194 hypothetical protein; hypothetical protein 954593..955225 Rhodopseudomonas palustris BisA53 4358550 YP_779791.1 CDS RPE_0855 NC_008435.1 955472 956317 D hypothetical protein 955472..956317 Rhodopseudomonas palustris BisA53 4358551 YP_779792.1 CDS RPE_0856 NC_008435.1 956354 956683 D hypothetical protein 956354..956683 Rhodopseudomonas palustris BisA53 4358552 YP_779793.1 CDS RPE_0857 NC_008435.1 956658 956930 R hypothetical protein complement(956658..956930) Rhodopseudomonas palustris BisA53 4358553 YP_779794.1 CDS RPE_0858 NC_008435.1 956970 958439 R PFAM: amine oxidase; KEGG: rpc:RPC_4728 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(956970..958439) Rhodopseudomonas palustris BisA53 4358554 YP_779795.1 CDS RPE_0859 NC_008435.1 958553 959749 R KEGG: rpc:RPC_4727 hypothetical protein; hypothetical protein complement(958553..959749) Rhodopseudomonas palustris BisA53 4358555 YP_779796.1 CDS RPE_0860 NC_008435.1 959938 961374 R KEGG: mag:amb2703 hypothetical protein; hypothetical protein complement(959938..961374) Rhodopseudomonas palustris BisA53 4358556 YP_779797.1 CDS groEL NC_008435.1 961499 963142 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; the rhizobia have multiple copies of the groEL gene which are active under different environmental conditions; the S. meliloti protein in this cluster is not associated with a groES gene; chaperonin GroEL complement(961499..963142) Rhodopseudomonas palustris BisA53 4358207 YP_779798.1 CDS RPE_0862 NC_008435.1 963321 963617 R PFAM: chaperonin Cpn10; KEGG: rpc:RPC_4725 chaperonin Cpn10; chaperonin Cpn10 complement(963321..963617) Rhodopseudomonas palustris BisA53 4358208 YP_779799.1 CDS RPE_0863 NC_008435.1 963807 964445 D KEGG: rpc:RPC_4724 hypothetical protein; hypothetical protein 963807..964445 Rhodopseudomonas palustris BisA53 4358209 YP_779800.1 CDS RPE_0864 NC_008435.1 964483 965691 D PFAM: major facilitator superfamily MFS_1; KEGG: rpb:RPB_1839 major facilitator superfamily MFS_1; major facilitator transporter 964483..965691 Rhodopseudomonas palustris BisA53 4358210 YP_779801.1 CDS RPE_0865 NC_008435.1 965758 966546 R KEGG: rpc:RPC_4723 hypothetical protein; hypothetical protein complement(965758..966546) Rhodopseudomonas palustris BisA53 4358211 YP_779802.1 CDS RPE_0866 NC_008435.1 966843 967643 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpc:RPC_4722 ErfK/YbiS/YcfS/YnhG; hypothetical protein 966843..967643 Rhodopseudomonas palustris BisA53 4358212 YP_779803.1 CDS RPE_0867 NC_008435.1 967887 968144 R KEGG: rpc:RPC_0352 hypothetical protein; hypothetical protein complement(967887..968144) Rhodopseudomonas palustris BisA53 4358213 YP_779804.1 CDS RPE_0868 NC_008435.1 968350 969180 R KEGG: rpc:RPC_4721 putative periplasmic ligand-binding sensor protein; putative periplasmic ligand-binding sensor protein complement(968350..969180) Rhodopseudomonas palustris BisA53 4358214 YP_779805.1 CDS RPE_0869 NC_008435.1 969336 970181 R PFAM: YdjC family protein; KEGG: rpd:RPD_4120 YdjC-like protein; hypothetical protein complement(969336..970181) Rhodopseudomonas palustris BisA53 4358215 YP_779806.1 CDS RPE_0870 NC_008435.1 970178 971212 R PFAM: glycosyl transferase, family 2; KEGG: rpc:RPC_4719 glycosyl transferase, family 2; glycosyl transferase family protein complement(970178..971212) Rhodopseudomonas palustris BisA53 4358216 YP_779807.1 CDS hisG NC_008435.1 971313 972290 R long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase complement(971313..972290) Rhodopseudomonas palustris BisA53 4358217 YP_779808.1 CDS hisZ NC_008435.1 972287 973450 R May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit complement(972287..973450) Rhodopseudomonas palustris BisA53 4358218 YP_779809.1 CDS RPE_0873 NC_008435.1 973556 974332 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(973556..974332) Rhodopseudomonas palustris BisA53 4358219 YP_779810.1 CDS RPE_0874 NC_008435.1 974547 975230 D KEGG: rpc:RPC_4712 hypothetical protein; hypothetical protein 974547..975230 Rhodopseudomonas palustris BisA53 4358220 YP_779811.1 CDS ubiA NC_008435.1 975237 976172 D UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; 4-hydroxybenzoate polyprenyltransferase 975237..976172 Rhodopseudomonas palustris BisA53 4358221 YP_779812.1 CDS RPE_0876 NC_008435.1 976576 977100 R KEGG: rpa:RPA1154 hypothetical protein; hypothetical protein complement(976576..977100) Rhodopseudomonas palustris BisA53 4358222 YP_779813.1 CDS RPE_0877 NC_008435.1 977368 978774 D PFAM: peptidase U62, modulator of DNA gyrase; KEGG: rpc:RPC_4708 peptidase U62, modulator of DNA gyrase; C69 family peptidase 977368..978774 Rhodopseudomonas palustris BisA53 4358223 YP_779814.1 CDS RPE_0878 NC_008435.1 978761 979594 D PFAM: inositol monophosphatase; KEGG: rpc:RPC_4707 inositol monophosphatase; inositol monophosphatase 978761..979594 Rhodopseudomonas palustris BisA53 4358224 YP_779815.1 CDS RPE_0879 NC_008435.1 979630 979872 D KEGG: rpc:RPC_4706 hypothetical protein; hypothetical protein 979630..979872 Rhodopseudomonas palustris BisA53 4360218 YP_779816.1 CDS RPE_0880 NC_008435.1 979984 981288 D PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: rpc:RPC_4705 three-deoxy-D-manno-octulosonic-acid transferase-like; 3-deoxy-D-manno-octulosonic-acid transferase 979984..981288 Rhodopseudomonas palustris BisA53 4360219 YP_779817.1 CDS lpxK NC_008435.1 981281 982303 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 981281..982303 Rhodopseudomonas palustris BisA53 4360220 YP_779818.1 CDS RPE_0882 NC_008435.1 982331 982552 R KEGG: rpc:RPC_4703 hypothetical protein; hypothetical protein complement(982331..982552) Rhodopseudomonas palustris BisA53 4360221 YP_779819.1 CDS RPE_0883 NC_008435.1 982823 985261 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rfr:Rfer_3395 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); diguanylate cyclase/phosphodiesterase complement(982823..985261) Rhodopseudomonas palustris BisA53 4360222 YP_779820.1 CDS RPE_0884 NC_008435.1 985262 986161 R SMART: extracellular solute-binding protein, family 3; KEGG: gsu:GSU1528 ABC transporter, periplasmic substrate-binding protein; extracellular solute-binding protein complement(985262..986161) Rhodopseudomonas palustris BisA53 4360223 YP_779821.1 CDS RPE_0885 NC_008435.1 986277 987020 R KEGG: sme:SMc01718 hypothetical protein; hypothetical protein complement(986277..987020) Rhodopseudomonas palustris BisA53 4360224 YP_779822.1 CDS RPE_0886 NC_008435.1 987007 988449 R TIGRFAM: Twin-arginine translocation pathway signal; KEGG: ade:Adeh_1432 1-aminocyclopropane-1-carboxylate deaminase; 1-aminocyclopropane-1-carboxylate deaminase family protein complement(987007..988449) Rhodopseudomonas palustris BisA53 4360225 YP_779823.1 CDS RPE_0887 NC_008435.1 988626 989738 R PFAM: SbmABacA family protein; ABC transporter domain protein; KEGG: rpc:RPC_4701 ABC transporter-like; SbmABacA family protein complement(988626..989738) Rhodopseudomonas palustris BisA53 4360226 YP_779824.1 CDS RPE_0888 NC_008435.1 990139 990366 D KEGG: rpc:RPC_4700 hypothetical protein; hypothetical protein 990139..990366 Rhodopseudomonas palustris BisA53 4360227 YP_779825.1 CDS RPE_0889 NC_008435.1 990347 991630 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpc:RPC_4699 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(990347..991630) Rhodopseudomonas palustris BisA53 4360228 YP_779826.1 CDS RPE_0890 NC_008435.1 991642 992004 R KEGG: rpc:RPC_4698 putative cytochrome c552 precursor; putative cytochrome c552 complement(991642..992004) Rhodopseudomonas palustris BisA53 4360229 YP_779827.1 CDS RPE_0891 NC_008435.1 992001 992474 R KEGG: rpd:RPD_0769 hypothetical protein; hypothetical protein complement(992001..992474) Rhodopseudomonas palustris BisA53 4360230 YP_779828.1 CDS RPE_0892 NC_008435.1 992587 994416 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rpc:RPC_4696 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(992587..994416) Rhodopseudomonas palustris BisA53 4360231 YP_779829.1 CDS RPE_0893 NC_008435.1 994575 995417 D PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpc:RPC_4695 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 994575..995417 Rhodopseudomonas palustris BisA53 4360232 YP_779830.1 CDS RPE_0894 NC_008435.1 995451 996467 D KEGG: rpc:RPC_4694 putative adenylate/guanylate cyclase; putative adenylate/guanylate cyclase 995451..996467 Rhodopseudomonas palustris BisA53 4360233 YP_779831.1 CDS RPE_0895 NC_008435.1 996589 997965 R PFAM: cytochrome P450; KEGG: rpc:RPC_4693 cytochrome P450; cytochrome P450 complement(996589..997965) Rhodopseudomonas palustris BisA53 4360234 YP_779832.1 CDS RPE_0896 NC_008435.1 998218 999147 D putative metalloprotease; heat shock protein HtpX 998218..999147 Rhodopseudomonas palustris BisA53 4357756 YP_779833.1 CDS RPE_0897 NC_008435.1 999358 1000542 R PFAM: aminotransferase, class V; KEGG: rpc:RPC_4689 aminotransferase, class V; class V aminotransferase complement(999358..1000542) Rhodopseudomonas palustris BisA53 4357757 YP_779834.1 CDS RPE_0898 NC_008435.1 1000923 1001681 R PFAM: nuclease (SNase domain protein); KEGG: rpc:RPC_4688 nuclease (SNase-like); nuclease complement(1000923..1001681) Rhodopseudomonas palustris BisA53 4357758 YP_779835.1 CDS RPE_0899 NC_008435.1 1001775 1003511 R KEGG: rpc:RPC_4687 hypothetical protein; hypothetical protein complement(1001775..1003511) Rhodopseudomonas palustris BisA53 4357759 YP_779836.1 CDS RPE_0900 NC_008435.1 1003825 1004694 D PFAM: peptidase C14, caspase catalytic subunit p20; KEGG: rpc:RPC_4686 peptidase C14, caspase catalytic subunit P20; peptidase C14, caspase catalytic subunit p20 1003825..1004694 Rhodopseudomonas palustris BisA53 4357760 YP_779837.1 CDS RPE_0901 NC_008435.1 1004741 1006879 R necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH complement(1004741..1006879) Rhodopseudomonas palustris BisA53 4357761 YP_779838.1 CDS mdoG NC_008435.1 1006867 1008372 R involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G complement(1006867..1008372) Rhodopseudomonas palustris BisA53 4357762 YP_779839.1 CDS RPE_0903 NC_008435.1 1008520 1009422 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rpc:RPC_4685 secretion protein HlyD; RND family efflux transporter MFP subunit complement(1008520..1009422) Rhodopseudomonas palustris BisA53 4357763 YP_779840.1 CDS RPE_0904 NC_008435.1 1009475 1011328 R PFAM: AsmA family protein; KEGG: rpd:RPD_1004 AsmA; AsmA family protein complement(1009475..1011328) Rhodopseudomonas palustris BisA53 4357764 YP_779841.1 CDS RPE_0905 NC_008435.1 1011362 1014520 R PFAM: acriflavin resistance protein; KEGG: rpc:RPC_0885 acriflavin resistance protein; acriflavin resistance protein complement(1011362..1014520) Rhodopseudomonas palustris BisA53 4357765 YP_779842.1 CDS RPE_0906 NC_008435.1 1014520 1015413 R KEGG: rpc:RPC_0886 secretion protein HlyD; secretion protein HlyD complement(1014520..1015413) Rhodopseudomonas palustris BisA53 4357766 YP_779843.1 CDS RPE_0907 NC_008435.1 1015559 1016218 R PFAM: OmpA/MotB domain protein; KEGG: rpb:RPB_0896 OmpA/MotB; OmpA/MotB domain-containing protein complement(1015559..1016218) Rhodopseudomonas palustris BisA53 4357767 YP_779844.1 CDS RPE_0908 NC_008435.1 1016321 1017796 R PFAM: TPR repeat-containing protein; peptidase C14, caspase catalytic subunit p20; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpb:RPB_0897 peptidase C14, caspase catalytic subunit P20; peptidase C14, caspase catalytic subunit p20 complement(1016321..1017796) Rhodopseudomonas palustris BisA53 4357768 YP_779845.1 CDS RPE_0909 NC_008435.1 1018101 1019720 D PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: rpc:RPC_0888 monooxygenase, FAD-binding; FAD-dependent oxidoreductase 1018101..1019720 Rhodopseudomonas palustris BisA53 4357769 YP_779846.1 CDS RPE_0910 NC_008435.1 1020235 1020462 D KEGG: rpb:RPB_0904 hypothetical protein; hypothetical protein 1020235..1020462 Rhodopseudomonas palustris BisA53 4357770 YP_779847.1 CDS RPE_0911 NC_008435.1 1020620 1021573 D PFAM: beta-lactamase domain protein; KEGG: rpa:RPA4673 putative beta lactamase precursor; beta-lactamase domain-containing protein 1020620..1021573 Rhodopseudomonas palustris BisA53 4357771 YP_779848.1 CDS RPE_0912 NC_008435.1 1021615 1022961 D An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; homogentisate 1,2-dioxygenase 1021615..1022961 Rhodopseudomonas palustris BisA53 4357772 YP_779849.1 CDS RPE_0913 NC_008435.1 1023100 1024413 D KEGG: rpb:RPB_0909 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetase 1023100..1024413 Rhodopseudomonas palustris BisA53 4357773 YP_779850.1 CDS hisS NC_008435.1 1024610 1026211 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(1024610..1026211) Rhodopseudomonas palustris BisA53 4359628 YP_779851.1 CDS RPE_0915 NC_008435.1 1026361 1027704 D catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 1026361..1027704 Rhodopseudomonas palustris BisA53 4359629 YP_779852.1 CDS RPE_0916 NC_008435.1 1028115 1029596 D PFAM: EAL domain protein; KEGG: rpc:RPC_0895 diguanylate phosphodiesterase (EAL domain); diguanylate phosphodiesterase 1028115..1029596 Rhodopseudomonas palustris BisA53 4359630 YP_779853.1 CDS RPE_0917 NC_008435.1 1029612 1030466 D TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpc:RPC_0896 HAD-superfamily hydrolase, subfamily IIA; HAD family hydrolase 1029612..1030466 Rhodopseudomonas palustris BisA53 4359631 YP_779854.1 CDS RPE_0918 NC_008435.1 1030533 1031999 R KEGG: sco:SCO2383 secreted protein; hypothetical protein complement(1030533..1031999) Rhodopseudomonas palustris BisA53 4359632 YP_779855.1 CDS RPE_0919 NC_008435.1 1032020 1033084 R hypothetical protein complement(1032020..1033084) Rhodopseudomonas palustris BisA53 4359633 YP_779856.1 CDS RPE_0920 NC_008435.1 1033253 1033648 R PFAM: response regulator receiver; KEGG: rpc:RPC_0897 response regulator receiver domain protein (CheY-like); response regulator receiver protein complement(1033253..1033648) Rhodopseudomonas palustris BisA53 4359634 YP_779857.1 CDS RPE_0921 NC_008435.1 1033979 1034839 D PFAM: protein of unknown function DUF519; KEGG: rpc:RPC_0898 protein of unknown function DUF519; hypothetical protein 1033979..1034839 Rhodopseudomonas palustris BisA53 4359635 YP_779858.1 CDS RPE_0922 NC_008435.1 1035099 1035311 D PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: rpc:RPC_0899 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein 1035099..1035311 Rhodopseudomonas palustris BisA53 4359636 YP_779859.1 CDS RPE_0923 NC_008435.1 1035466 1036089 R KEGG: rpc:RPC_0900 putative outer-membrane immunogenic protein precursor; putative outer-membrane immunogenic protein complement(1035466..1036089) Rhodopseudomonas palustris BisA53 4359637 YP_779860.1 CDS uvrC NC_008435.1 1036333 1038375 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1036333..1038375 Rhodopseudomonas palustris BisA53 4359638 YP_779861.1 CDS RPE_0925 NC_008435.1 1038488 1039105 D TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rpc:RPC_0902 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1038488..1039105 Rhodopseudomonas palustris BisA53 4359639 YP_779862.1 CDS RPE_0926 NC_008435.1 1039102 1039353 D TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: rpb:RPB_1175 molybdopterin converting factor, subunit 1; molybdopterin converting factor subunit 1 1039102..1039353 Rhodopseudomonas palustris BisA53 4359640 YP_779863.1 CDS RPE_0927 NC_008435.1 1039361 1039828 D PFAM: molybdopterin biosynthesis MoaE; KEGG: rpd:RPD_1278 molybdopterin biosynthesis MoaE; molybdopterin biosynthesis MoaE 1039361..1039828 Rhodopseudomonas palustris BisA53 4359641 YP_779864.1 CDS RPE_0928 NC_008435.1 1039828 1040850 D involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1039828..1040850 Rhodopseudomonas palustris BisA53 4359642 YP_779865.1 CDS RPE_0929 NC_008435.1 1041071 1041682 R TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: rpc:RPC_0906 conserved hypothetical protein 95; putative methyltransferase complement(1041071..1041682) Rhodopseudomonas palustris BisA53 4359643 YP_779866.1 CDS RPE_0930 NC_008435.1 1041884 1044247 R TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rpc:RPC_0907 pseudouridine synthase, Rsu; pseudouridine synthase Rsu complement(1041884..1044247) Rhodopseudomonas palustris BisA53 4359644 YP_779867.1 CDS RPE_0931 NC_008435.1 1044410 1044856 D PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: rpa:RPA1164 possible cytidine and deoxycytidylate deaminase; zinc-binding CMP/dCMP deaminase 1044410..1044856 Rhodopseudomonas palustris BisA53 4358712 YP_779868.1 CDS RPE_0932 NC_008435.1 1044861 1045334 R PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: rpc:RPC_0909 isoprenylcysteine carboxyl methyltransferase; isoprenylcysteine carboxyl methyltransferase complement(1044861..1045334) Rhodopseudomonas palustris BisA53 4358713 YP_779869.1 CDS RPE_0933 NC_008435.1 1045517 1045996 R PFAM: transcriptional regulator PadR family protein; KEGG: rpc:RPC_3227 transcriptional regulator, PadR-like family; PadR-like family transcriptional regulator complement(1045517..1045996) Rhodopseudomonas palustris BisA53 4358714 YP_779870.1 CDS RPE_0934 NC_008435.1 1046453 1047583 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rpc:RPC_0910 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 1046453..1047583 Rhodopseudomonas palustris BisA53 4358715 YP_779871.1 CDS RPE_0935 NC_008435.1 1047616 1047819 D PFAM: 4-oxalocrotonate tautomerase; KEGG: rpd:RPD_1290 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 1047616..1047819 Rhodopseudomonas palustris BisA53 4358716 YP_779872.1 CDS RPE_0936 NC_008435.1 1047968 1048366 D KEGG: bja:bll7455 hypothetical protein; hypothetical protein 1047968..1048366 Rhodopseudomonas palustris BisA53 4358717 YP_779873.1 CDS RPE_0937 NC_008435.1 1048665 1050728 R KEGG: rpc:RPC_0912 hypothetical protein; hypothetical protein complement(1048665..1050728) Rhodopseudomonas palustris BisA53 4358718 YP_779874.1 CDS RPE_0938 NC_008435.1 1050901 1053765 R TIGRFAM: conserved hypothetical membrane protein; KEGG: rpc:RPC_0914 double-transmembrane region-like; double-transmembrane region-like protein complement(1050901..1053765) Rhodopseudomonas palustris BisA53 4358719 YP_779875.1 CDS RPE_0939 NC_008435.1 1053762 1054700 R KEGG: rpc:RPC_0915 DUF58; hypothetical protein complement(1053762..1054700) Rhodopseudomonas palustris BisA53 4358720 YP_779876.1 CDS RPE_0940 NC_008435.1 1054700 1055701 R PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: rpc:RPC_0916 ATPase associated with various cellular activities, AAA_3; ATPase complement(1054700..1055701) Rhodopseudomonas palustris BisA53 4358721 YP_779877.1 CDS RPE_0941 NC_008435.1 1055910 1056515 D PFAM: protein of unknown function DUF1285; KEGG: rpb:RPB_1193 protein of unknown function DUF1285; hypothetical protein 1055910..1056515 Rhodopseudomonas palustris BisA53 4358722 YP_779878.1 CDS RPE_0942 NC_008435.1 1056512 1057189 D PFAM: NUDIX hydrolase; KEGG: rpc:RPC_0918 NUDIX hydrolase; NUDIX hydrolase 1056512..1057189 Rhodopseudomonas palustris BisA53 4358723 YP_779879.1 CDS RPE_0943 NC_008435.1 1057186 1057449 D KEGG: rpc:RPC_0919 hypothetical protein; hypothetical protein 1057186..1057449 Rhodopseudomonas palustris BisA53 4358724 YP_779880.1 CDS RPE_0944 NC_008435.1 1057463 1058719 D PFAM: Polynucleotide adenylyltransferase region; KEGG: rpc:RPC_0920 polynucleotide adenylyltransferase region; polynucleotide adenylyltransferase 1057463..1058719 Rhodopseudomonas palustris BisA53 4358725 YP_779881.1 CDS RPE_0945 NC_008435.1 1058873 1059115 R KEGG: rpc:RPC_0921 hypothetical protein; hypothetical protein complement(1058873..1059115) Rhodopseudomonas palustris BisA53 4358726 YP_779882.1 CDS RPE_0946 NC_008435.1 1059233 1059865 R KEGG: nwi:Nwi_2619 hypothetical protein; hypothetical protein complement(1059233..1059865) Rhodopseudomonas palustris BisA53 4358727 YP_779883.1 CDS RPE_0947 NC_008435.1 1059862 1060323 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: rpc:RPC_0923 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU complement(1059862..1060323) Rhodopseudomonas palustris BisA53 4358728 YP_779884.1 CDS RPE_0948 NC_008435.1 1060607 1061134 D TIGRFAM: Twin-arginine translocation pathway signal; ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: rpc:RPC_0924 ubiquinol-cytochrome c reductase, iron-sulfur subunit; ubiquinol-cytochrome c reductase, iron-sulfur subunit 1060607..1061134 Rhodopseudomonas palustris BisA53 4358729 YP_779885.1 CDS RPE_0949 NC_008435.1 1061185 1063260 D PFAM: cytochrome c1; Cytochrome b/b6, N-terminal domain; Cytochrome b/b6, C-terminal domain; KEGG: rpc:RPC_0925 cytochrome c1; cytochrome c1 1061185..1063260 Rhodopseudomonas palustris BisA53 4358915 YP_779886.1 CDS RPE_0950 NC_008435.1 1063405 1064079 D PFAM: dienelactone hydrolase; KEGG: rpc:RPC_0926 carboxymethylenebutenolidase; carboxymethylenebutenolidase 1063405..1064079 Rhodopseudomonas palustris BisA53 4358916 YP_779887.1 CDS RPE_0951 NC_008435.1 1064149 1064430 D KEGG: rpd:RPD_1305 hypothetical protein; hypothetical protein 1064149..1064430 Rhodopseudomonas palustris BisA53 4358917 YP_779888.1 CDS RPE_0952 NC_008435.1 1064923 1066941 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rpc:RPC_0929 NADH dehydrogenase (quinone); hydrogenase 4 subunit B 1064923..1066941 Rhodopseudomonas palustris BisA53 4358918 YP_779889.1 CDS RPE_0953 NC_008435.1 1066932 1067891 D KEGG: rpc:RPC_0930 respiratory-chain NADH dehydrogenase, subunit 1; respiratory-chain NADH dehydrogenase subunit 1 1066932..1067891 Rhodopseudomonas palustris BisA53 4358919 YP_779890.1 CDS RPE_0954 NC_008435.1 1067891 1068553 D KEGG: rpc:RPC_0931 hypothetical protein; hypothetical protein 1067891..1068553 Rhodopseudomonas palustris BisA53 4358920 YP_779891.1 CDS RPE_0955 NC_008435.1 1068550 1070001 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rpc:RPC_0932 NADH dehydrogenase (quinone); hydrogenase 4 subunit F 1068550..1070001 Rhodopseudomonas palustris BisA53 4358921 YP_779892.1 CDS RPE_0956 NC_008435.1 1070014 1071522 D PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; NADH dehydrogenase (ubiquinone), 30 kDa subunit; KEGG: rpc:RPC_0933 NADH-ubiquinone oxidoreductase, chain 49kDa; NADH-ubiquinone oxidoreductase subunit 49kDa 1070014..1071522 Rhodopseudomonas palustris BisA53 4358922 YP_779893.1 CDS RPE_0957 NC_008435.1 1071529 1072050 D PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: bja:blr6344 probable hydrogenase-3 subunit G; NADH ubiquinone oxidoreductase, 20 kDa subunit 1071529..1072050 Rhodopseudomonas palustris BisA53 4358923 YP_779894.1 CDS RPE_0958 NC_008435.1 1072197 1074242 D TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Autotransporter beta- domain protein; KEGG: rpd:RPD_3849 outer membrane autotransporter barrel; outer membrane autotransporter 1072197..1074242 Rhodopseudomonas palustris BisA53 4358924 YP_779895.1 CDS RPE_0959 NC_008435.1 1074418 1074792 R KEGG: rpc:RPC_0935 hypothetical protein; hypothetical protein complement(1074418..1074792) Rhodopseudomonas palustris BisA53 4358925 YP_779896.1 CDS RPE_0960 NC_008435.1 1074989 1075783 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: rpc:RPC_0936 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 1074989..1075783 Rhodopseudomonas palustris BisA53 4358926 YP_779897.1 CDS RPE_0961 NC_008435.1 1075788 1076231 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpc:RPC_0937 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 1075788..1076231 Rhodopseudomonas palustris BisA53 4358927 YP_779898.1 CDS RPE_0962 NC_008435.1 1076228 1077088 D TIGRFAM: TonB family protein; KEGG: rpc:RPC_0938 TonB-like; TonB family protein 1076228..1077088 Rhodopseudomonas palustris BisA53 4358928 YP_779899.1 CDS RPE_0963 NC_008435.1 1077313 1077465 D KEGG: bja:bll7951 hypothetical protein; hypothetical protein 1077313..1077465 Rhodopseudomonas palustris BisA53 4358929 YP_779900.1 CDS RPE_0964 NC_008435.1 1077692 1077967 D PFAM: protein of unknown function DUF1153; KEGG: nha:Nham_0692 protein of unknown function DUF1153; hypothetical protein 1077692..1077967 Rhodopseudomonas palustris BisA53 4358930 YP_779901.1 CDS fliF NC_008435.1 1078142 1079749 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1078142..1079749 Rhodopseudomonas palustris BisA53 4358931 YP_779902.1 CDS fliG NC_008435.1 1079757 1080845 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1079757..1080845 Rhodopseudomonas palustris BisA53 4358798 YP_779903.1 CDS fliH NC_008435.1 1080845 1081489 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 1080845..1081489 Rhodopseudomonas palustris BisA53 4358799 YP_779904.1 CDS RPE_0968 NC_008435.1 1081493 1081843 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1081493..1081843 Rhodopseudomonas palustris BisA53 4358800 YP_779905.1 CDS RPE_0969 NC_008435.1 1081897 1083279 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpc:RPC_0945 two component, sigma54 specific, transcriptional regulator, fis family; two component sigma54 specific Fis family transcriptional regulator 1081897..1083279 Rhodopseudomonas palustris BisA53 4358801 YP_779906.1 CDS RPE_0970 NC_008435.1 1083494 1083649 R KEGG: rpc:RPC_0946 hypothetical protein; hypothetical protein complement(1083494..1083649) Rhodopseudomonas palustris BisA53 4358802 YP_779907.1 CDS RPE_0971 NC_008435.1 1083836 1084114 R KEGG: rpc:RPC_0947 hypothetical protein; hypothetical protein complement(1083836..1084114) Rhodopseudomonas palustris BisA53 4358803 YP_779908.1 CDS RPE_0972 NC_008435.1 1084182 1084400 R hypothetical protein complement(1084182..1084400) Rhodopseudomonas palustris BisA53 4358804 YP_779909.1 CDS RPE_0973 NC_008435.1 1084490 1084753 R KEGG: rpa:RPA1271 hypothetical protein; hypothetical protein complement(1084490..1084753) Rhodopseudomonas palustris BisA53 4358805 YP_779910.1 CDS RPE_0974 NC_008435.1 1085043 1085852 D PFAM: transglutaminase domain protein; KEGG: rpc:RPC_0949 transglutaminase-like; transglutaminase domain-containing protein 1085043..1085852 Rhodopseudomonas palustris BisA53 4358806 YP_779911.1 CDS RPE_0975 NC_008435.1 1085952 1087061 D KEGG: rpc:RPC_0955 exodeoxyribonuclease V; exodeoxyribonuclease V 1085952..1087061 Rhodopseudomonas palustris BisA53 4358807 YP_779912.1 CDS RPE_0976 NC_008435.1 1087227 1087967 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_0956 methyltransferase type 12; type 12 methyltransferase complement(1087227..1087967) Rhodopseudomonas palustris BisA53 4358808 YP_779913.1 CDS RPE_0977 NC_008435.1 1088125 1088646 D PFAM: Ferritin, Dps family protein; KEGG: rpa:RPA1274 possible Dps protein family starvation-inducible DNA-binding protein; Ferritin, Dps family protein 1088125..1088646 Rhodopseudomonas palustris BisA53 4358809 YP_779914.1 CDS RPE_0978 NC_008435.1 1090283 1090807 R KEGG: rpc:RPC_0958 uncharacterized protein containing double-stranded beta helix domain-like; double-stranded beta helix domain-containing protein complement(1090283..1090807) Rhodopseudomonas palustris BisA53 4358810 YP_779915.1 CDS RPE_0979 NC_008435.1 1091029 1092219 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(1091029..1092219) Rhodopseudomonas palustris BisA53 4358811 YP_779916.1 CDS RPE_0980 NC_008435.1 1092483 1092938 D PFAM: GatB/Yqey domain protein; KEGG: rpa:RPA1278 GatB/YqeY; GatB/Yqey domain-containing protein 1092483..1092938 Rhodopseudomonas palustris BisA53 4358812 YP_779917.1 CDS RPE_0981 NC_008435.1 1093082 1094425 R KEGG: rpc:RPC_0698 phenylacetate--CoA ligase; phenylacetate--CoA ligase complement(1093082..1094425) Rhodopseudomonas palustris BisA53 4358813 YP_779918.1 CDS RPE_0982 NC_008435.1 1094508 1095062 R PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: rpc:RPC_0697 pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate ferredoxin/flavodoxin oxidoreductase complement(1094508..1095062) Rhodopseudomonas palustris BisA53 4358814 YP_779919.1 CDS RPE_0983 NC_008435.1 1095062 1095901 R catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta complement(1095062..1095901) Rhodopseudomonas palustris BisA53 4358815 YP_779920.1 CDS RPE_0984 NC_008435.1 1095901 1097061 R PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rpc:RPC_0695 pyruvate flavodoxin/ferredoxin oxidoreductase-like; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha complement(1095901..1097061) Rhodopseudomonas palustris BisA53 4357827 YP_779921.1 CDS RPE_0985 NC_008435.1 1097058 1097996 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: rpc:RPC_0694 pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate ferredoxin/flavodoxin oxidoreductase complement(1097058..1097996) Rhodopseudomonas palustris BisA53 4357828 YP_779922.1 CDS RPE_0986 NC_008435.1 1097993 1099810 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: rpc:RPC_0693 thiamine pyrophosphate enzyme-like TPP-binding; thiamine pyrophosphate binding domain-containing protein complement(1097993..1099810) Rhodopseudomonas palustris BisA53 4357829 YP_779923.1 CDS RPE_0987 NC_008435.1 1100031 1100900 D TIGRFAM: phenylacetic acid degradation operon negative regulatory protein PaaX; PFAM: PaaX domain protein; PaaX domain protein, C-terminal domain; KEGG: rpc:RPC_0692 phenylacetic acid degradation operon negative regulatory protein PaaX; phenylacetic acid degradation operon negative regulatory protein PaaX 1100031..1100900 Rhodopseudomonas palustris BisA53 4357830 YP_779924.1 CDS paaA NC_008435.1 1100974 1101963 D with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA 1100974..1101963 Rhodopseudomonas palustris BisA53 4357831 YP_779925.1 CDS paaB NC_008435.1 1102157 1102444 D with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB 1102157..1102444 Rhodopseudomonas palustris BisA53 4357832 YP_779926.1 CDS RPE_0990 NC_008435.1 1102635 1103411 D TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: rpc:RPC_0689 phenylacetate-CoA oxygenase, PaaI subunit; phenylacetate-CoA oxygenase subunit PaaI 1102635..1103411 Rhodopseudomonas palustris BisA53 4357833 YP_779927.1 CDS RPE_0991 NC_008435.1 1103405 1103908 D TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: rpd:RPD_1827 phenylacetate-CoA oxygenase, PaaJ subunit; phenylacetate-CoA oxygenase subunit PaaJ 1103405..1103908 Rhodopseudomonas palustris BisA53 4357834 YP_779928.1 CDS RPE_0992 NC_008435.1 1104098 1105180 D TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rpc:RPC_0687 phenylacetate-CoA oxygenase/reductase, PaaK subunit; phenylacetate-CoA oxygenase/reductase subunit PaaK 1104098..1105180 Rhodopseudomonas palustris BisA53 4357835 YP_779929.1 CDS RPE_0993 NC_008435.1 1105211 1105522 R PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: rpc:RPC_0686 ethyl tert-butyl ether degradation EthD; ethyl tert-butyl ether degradation EthD complement(1105211..1105522) Rhodopseudomonas palustris BisA53 4357836 YP_779930.1 CDS RPE_0994 NC_008435.1 1105588 1107687 R catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA; bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase complement(1105588..1107687) Rhodopseudomonas palustris BisA53 4357837 YP_779931.1 CDS RPE_0995 NC_008435.1 1107776 1108414 R PFAM: regulatory protein, TetR; KEGG: rpc:RPC_0684 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1107776..1108414) Rhodopseudomonas palustris BisA53 4357838 YP_779932.1 CDS RPE_0996 NC_008435.1 1108434 1109768 R TIGRFAM: phenylacetate-CoA ligase; KEGG: rpc:RPC_0683 phenylacetate-CoA ligase; phenylacetate-CoA ligase complement(1108434..1109768) Rhodopseudomonas palustris BisA53 4357839 YP_779933.1 CDS RPE_0997 NC_008435.1 1109776 1110258 R TIGRFAM: uncharacterized domain 1; phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: rpc:RPC_0682 phenylacetic acid degradation protein PaaD; phenylacetic acid degradation protein PaaD complement(1109776..1110258) Rhodopseudomonas palustris BisA53 4357840 YP_779934.1 CDS RPE_0998 NC_008435.1 1110258 1111043 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(1110258..1111043) Rhodopseudomonas palustris BisA53 4357841 YP_779935.1 CDS RPE_0999 NC_008435.1 1111240 1112421 D PFAM: Extracellular ligand-binding receptor; KEGG: rpa:RPA4019 putative branched-chain amino acid ABC transporter system substrate-binding protein; extracellular ligand-binding receptor 1111240..1112421 Rhodopseudomonas palustris BisA53 4357842 YP_779936.1 CDS RPE_1000 NC_008435.1 1112596 1113471 D PFAM: inner-membrane translocator; KEGG: rpa:RPA4020 possible branched-chain amino acid transport system permease protein; inner-membrane translocator 1112596..1113471 Rhodopseudomonas palustris BisA53 4357843 YP_779937.1 CDS RPE_1001 NC_008435.1 1113475 1114419 D PFAM: inner-membrane translocator; KEGG: rpa:RPA4021 putative branched-chain amino acid ABC transport system permease protein livm (liv-I protein m); inner-membrane translocator 1113475..1114419 Rhodopseudomonas palustris BisA53 4359802 YP_779938.1 CDS RPE_1002 NC_008435.1 1114416 1115198 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA4022 putative branched-chain amino acid ABC transport system, ATP-binding protein; ABC transporter-like protein 1114416..1115198 Rhodopseudomonas palustris BisA53 4359803 YP_779939.1 CDS RPE_1003 NC_008435.1 1115191 1115895 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_0676 ABC transporter related; ABC transporter-like protein 1115191..1115895 Rhodopseudomonas palustris BisA53 4359804 YP_779940.1 CDS RPE_1004 NC_008435.1 1116023 1117045 D KEGG: bja:bll4740 nonspecific acid phosphatase precursor; nonspecific acid phosphatase 1116023..1117045 Rhodopseudomonas palustris BisA53 4359805 YP_779941.1 CDS RPE_1005 NC_008435.1 1117413 1118078 R PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: rpd:RPD_1558 response regulator receiver; two component LuxR family transcriptional regulator complement(1117413..1118078) Rhodopseudomonas palustris BisA53 4359806 YP_779942.1 CDS RPE_1006 NC_008435.1 1118274 1119668 R PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: rpd:RPD_1559 ATP-binding region, ATPase-like; putative signal transduction histidine kinase complement(1118274..1119668) Rhodopseudomonas palustris BisA53 4359807 YP_779943.1 CDS RPE_1007 NC_008435.1 1120059 1129400 D PFAM: Hemolysin-type calcium-binding region; Animal heme peroxidase; KEGG: rpd:RPD_1560 Animal heme peroxidase; heme peroxidase 1120059..1129400 Rhodopseudomonas palustris BisA53 4359808 YP_779944.1 CDS RPE_1008 NC_008435.1 1129494 1131245 D KEGG: rpd:RPD_1561 type I secretion system ATPase, PrtD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 1129494..1131245 Rhodopseudomonas palustris BisA53 4359809 YP_779945.1 CDS RPE_1009 NC_008435.1 1131242 1133446 D KEGG: rpd:RPD_1562 RTX toxins and related Ca2+-binding proteins-like; RTX toxins and related Ca2+-binding proteins-like protein 1131242..1133446 Rhodopseudomonas palustris BisA53 4359810 YP_779946.1 CDS RPE_1010 NC_008435.1 1133468 1134826 D TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: rpd:RPD_1563 type I secretion membrane fusion protein, HlyD; HlyD family type I secretion membrane fusion protein 1133468..1134826 Rhodopseudomonas palustris BisA53 4359811 YP_779947.1 CDS RPE_1011 NC_008435.1 1135061 1135324 D hypothetical protein 1135061..1135324 Rhodopseudomonas palustris BisA53 4359812 YP_779948.1 CDS RPE_1012 NC_008435.1 1135499 1135801 D hypothetical protein 1135499..1135801 Rhodopseudomonas palustris BisA53 4359813 YP_779949.1 CDS RPE_1013 NC_008435.1 1136248 1137051 R KEGG: atc:AGR_pAT_139 hypothetical protein; hypothetical protein complement(1136248..1137051) Rhodopseudomonas palustris BisA53 4359814 YP_779950.1 CDS RPE_1014 NC_008435.1 1137151 1137549 D PFAM: transposase IS3/IS911 family protein; KEGG: bja:blr0034 putative transposase; transposase IS3/IS911 family protein 1137151..1137549 Rhodopseudomonas palustris BisA53 4359815 YP_779951.1 CDS RPE_1015 NC_008435.1 1137546 1137893 D PFAM: IS66 Orf2 family protein; KEGG: mag:amb0402 transposase and inactivated derivative; IS66 Orf2 family protein 1137546..1137893 Rhodopseudomonas palustris BisA53 4359816 YP_779952.1 CDS RPE_1016 NC_008435.1 1137967 1139553 D PFAM: transposase IS66; KEGG: mag:amb3325 transposase and inactivated derivative; transposase IS66 1137967..1139553 Rhodopseudomonas palustris BisA53 4359817 YP_779953.1 CDS RPE_1017 NC_008435.1 1139971 1147383 R hypothetical protein complement(1139971..1147383) Rhodopseudomonas palustris BisA53 4359818 YP_779954.1 CDS RPE_1018 NC_008435.1 1148500 1148868 D KEGG: bja:blr6106 hypothetical protein; hypothetical protein 1148500..1148868 Rhodopseudomonas palustris BisA53 4359819 YP_779955.1 CDS RPE_1019 NC_008435.1 1150352 1154368 D KEGG: rpd:RPD_3942 hypothetical protein; hypothetical protein 1150352..1154368 Rhodopseudomonas palustris BisA53 4359767 YP_779956.1 CDS RPE_1020 NC_008435.1 1154432 1155658 D KEGG: rpd:RPD_3943 hypothetical protein; hypothetical protein 1154432..1155658 Rhodopseudomonas palustris BisA53 4359768 YP_779957.1 CDS RPE_1021 NC_008435.1 1155655 1156650 D KEGG: rpd:RPD_3944 hypothetical protein; hypothetical protein 1155655..1156650 Rhodopseudomonas palustris BisA53 4359769 YP_779958.1 CDS RPE_1022 NC_008435.1 1156790 1158511 R PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: rpd:RPD_3945 protein of unknown function DUF262; hypothetical protein complement(1156790..1158511) Rhodopseudomonas palustris BisA53 4359770 YP_779959.1 CDS RPE_1024 NC_008435.1 1159758 1160027 R PFAM: Conjugal transfer TraD family protein; KEGG: rpd:RPD_3948 conjugal transfer TraD; conjugal transfer TraD family protein complement(1159758..1160027) Rhodopseudomonas palustris BisA53 4359772 YP_779960.1 CDS RPE_1025 NC_008435.1 1160029 1160355 R KEGG: rpd:RPD_3949 hypothetical protein; hypothetical protein complement(1160029..1160355) Rhodopseudomonas palustris BisA53 4359773 YP_779961.1 CDS RPE_1026 NC_008435.1 1160526 1163546 D MobA/MobL family protein; conjugal transfer relaxase TraA 1160526..1163546 Rhodopseudomonas palustris BisA53 4359774 YP_779962.1 CDS RPE_1027 NC_008435.1 1163665 1163880 D PFAM: Prophage CP4-57 regulatory; KEGG: rpc:RPC_4521 phage transcriptional regulator, AlpA; phage transcriptional regulator, AlpA 1163665..1163880 Rhodopseudomonas palustris BisA53 4359775 YP_779963.1 CDS RPE_1028 NC_008435.1 1164133 1164348 D hypothetical protein 1164133..1164348 Rhodopseudomonas palustris BisA53 4359776 YP_779964.1 CDS RPE_1029 NC_008435.1 1164531 1165619 D KEGG: hch:HCH_01988 probable phage protein; hypothetical protein 1164531..1165619 Rhodopseudomonas palustris BisA53 4359777 YP_779965.1 CDS RPE_1030 NC_008435.1 1165607 1166107 D KEGG: hch:HCH_10007 putative threonine efflux protein; putative threonine efflux protein 1165607..1166107 Rhodopseudomonas palustris BisA53 4359778 YP_779966.1 CDS RPE_1031 NC_008435.1 1166104 1167984 D KEGG: hch:HCH_01987 probable phage protein; hypothetical protein 1166104..1167984 Rhodopseudomonas palustris BisA53 4359779 YP_779967.1 CDS RPE_1032 NC_008435.1 1168225 1168902 D KEGG: nha:Nham_2758 transposase, IS4; transposase, IS4 1168225..1168902 Rhodopseudomonas palustris BisA53 4359780 YP_779968.1 CDS RPE_1033 NC_008435.1 1168899 1169579 D PFAM: transposase, IS4 family protein; KEGG: nha:Nham_2758 transposase, IS4; transposase, IS4 family protein 1168899..1169579 Rhodopseudomonas palustris BisA53 4359781 YP_779969.1 CDS RPE_1034 NC_008435.1 1169721 1172087 R hypothetical protein complement(1169721..1172087) Rhodopseudomonas palustris BisA53 4359782 YP_779970.1 CDS RPE_1035 NC_008435.1 1172172 1172639 D KEGG: rpc:RPC_0991 hypothetical protein; hypothetical protein 1172172..1172639 Rhodopseudomonas palustris BisA53 4359783 YP_779971.1 CDS RPE_1036 NC_008435.1 1172778 1174406 D PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: rpc:RPC_0990 recombinase; recombinase 1172778..1174406 Rhodopseudomonas palustris BisA53 4359872 YP_779972.1 CDS RPE_1037 NC_008435.1 1174540 1174899 R KEGG: rpc:RPC_0989 hypothetical protein; hypothetical protein complement(1174540..1174899) Rhodopseudomonas palustris BisA53 4359874 YP_779973.1 CDS RPE_1038 NC_008435.1 1174942 1175580 R PFAM: putative methyltransferase; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_0988 phosphatidylethanolamine N-methyltransferase; phosphatidylethanolamine N-methyltransferase complement(1174942..1175580) Rhodopseudomonas palustris BisA53 4359875 YP_779974.1 CDS mnmA NC_008435.1 1175599 1176858 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(1175599..1176858) Rhodopseudomonas palustris BisA53 4359876 YP_779975.1 CDS RPE_1040 NC_008435.1 1177107 1178651 D PFAM: flagellar hook-length control protein; KEGG: rpc:RPC_0986 flagellar hook-length control protein; flagellar hook-length control protein 1177107..1178651 Rhodopseudomonas palustris BisA53 4359877 YP_779976.1 CDS RPE_1041 NC_008435.1 1178661 1179392 D PFAM: flagellar hook capping protein; KEGG: rpc:RPC_0985 flagellar hook capping protein; flagellar hook capping protein 1178661..1179392 Rhodopseudomonas palustris BisA53 4359878 YP_779977.1 CDS RPE_1042 NC_008435.1 1179413 1180222 R TIGRFAM: lytic murein transglycosylase; KEGG: rpc:RPC_0984 lytic murein transglycosylase; lytic murein transglycosylase complement(1179413..1180222) Rhodopseudomonas palustris BisA53 4359879 YP_779978.1 CDS RPE_1043 NC_008435.1 1180343 1180708 D KEGG: rpb:RPB_4120 hypothetical protein; hypothetical protein 1180343..1180708 Rhodopseudomonas palustris BisA53 4359880 YP_779979.1 CDS RPE_1044 NC_008435.1 1180852 1181211 D KEGG: bbr:BB0831 hypothetical protein; hypothetical protein 1180852..1181211 Rhodopseudomonas palustris BisA53 4359881 YP_779980.1 CDS RPE_1045 NC_008435.1 1181218 1181709 D KEGG: gvi:gll1315 hypothetical protein; hypothetical protein 1181218..1181709 Rhodopseudomonas palustris BisA53 4359882 YP_779981.1 CDS RPE_1046 NC_008435.1 1183070 1183432 R PFAM: Cupin 2, conserved barrel domain protein; KEGG: rpc:RPC_0980 cupin 2, conserved barrel; cupin complement(1183070..1183432) Rhodopseudomonas palustris BisA53 4359883 YP_779982.1 CDS RPE_1047 NC_008435.1 1183548 1184246 R KEGG: rpd:RPD_0618 cytochrome c, class I; cytochrome c553-like protein complement(1183548..1184246) Rhodopseudomonas palustris BisA53 4359884 YP_779983.1 CDS RPE_1048 NC_008435.1 1184455 1185708 R KEGG: rpd:RPD_0619 putative L-sorbosone dehydrogenase; putative L-sorbosone dehydrogenase complement(1184455..1185708) Rhodopseudomonas palustris BisA53 4359885 YP_779984.1 CDS RPE_1049 NC_008435.1 1186084 1186503 D KEGG: rpc:RPC_0979 hypothetical protein; hypothetical protein 1186084..1186503 Rhodopseudomonas palustris BisA53 4359886 YP_779985.1 CDS RPE_1050 NC_008435.1 1186516 1186887 R KEGG: rpb:RPB_4124 hypothetical protein; hypothetical protein complement(1186516..1186887) Rhodopseudomonas palustris BisA53 4359887 YP_779986.1 CDS RPE_1051 NC_008435.1 1188646 1188882 R KEGG: mlo:mll9021 transposase; transposase complement(1188646..1188882) Rhodopseudomonas palustris BisA53 4359888 YP_779987.1 CDS RPE_1052 NC_008435.1 1189127 1190875 R PFAM: Integrase, catalytic region; KEGG: sme:SMb20905 putative transposase protein; integrase catalytic subunit complement(1189127..1190875) Rhodopseudomonas palustris BisA53 4358984 YP_779988.1 CDS RPE_1054 NC_008435.1 1192341 1192640 R KEGG: rpa:RPA1289 hypothetical protein; hypothetical protein complement(1192341..1192640) Rhodopseudomonas palustris BisA53 4358986 YP_779989.1 CDS RPE_1055 NC_008435.1 1192713 1194827 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(1192713..1194827) Rhodopseudomonas palustris BisA53 4358987 YP_779990.1 CDS dnaG NC_008435.1 1195093 1197159 R synthesizes RNA primers at the replication forks; DNA primase complement(1195093..1197159) Rhodopseudomonas palustris BisA53 4358988 YP_779991.1 CDS RPE_1057 NC_008435.1 1197249 1197518 R KEGG: rpc:RPC_0969 hypothetical protein; hypothetical protein complement(1197249..1197518) Rhodopseudomonas palustris BisA53 4358989 YP_779992.1 CDS RPE_1058 NC_008435.1 1197584 1197979 R KEGG: rpd:RPD_3977 hypothetical protein; hypothetical protein complement(1197584..1197979) Rhodopseudomonas palustris BisA53 4358990 YP_779993.1 CDS RPE_1059 NC_008435.1 1198163 1199002 D PFAM: N-formylglutamate amidohydrolase; KEGG: rpc:RPC_0966 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 1198163..1199002 Rhodopseudomonas palustris BisA53 4358991 YP_779994.1 CDS clpS NC_008435.1 1199336 1199641 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor complement(1199336..1199641) Rhodopseudomonas palustris BisA53 4358992 YP_779995.1 CDS RPE_1061 NC_008435.1 1199834 1200691 D PFAM: protein of unknown function DUF1194; KEGG: rpc:RPC_1144 protein of unknown function DUF1194; hypothetical protein 1199834..1200691 Rhodopseudomonas palustris BisA53 4358993 YP_779996.1 CDS RPE_1062 NC_008435.1 1200874 1202109 R KEGG: rpc:RPC_1145 RNA methyltransferase; RNA methyltransferase complement(1200874..1202109) Rhodopseudomonas palustris BisA53 4358994 YP_779997.1 CDS RPE_1063 NC_008435.1 1202155 1203567 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rpa:RPA0949 putative multidrug efflux protein (NorM); MATE efflux family protein complement(1202155..1203567) Rhodopseudomonas palustris BisA53 4358995 YP_779998.1 CDS RPE_1064 NC_008435.1 1203630 1204370 R TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: bja:bll2649 putative hemolysin; hemolysin A complement(1203630..1204370) Rhodopseudomonas palustris BisA53 4358996 YP_779999.1 CDS RPE_1065 NC_008435.1 1204383 1204955 R PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: rpd:RPD_4306 nucleoside 2-deoxyribosyltransferase; nucleoside 2-deoxyribosyltransferase complement(1204383..1204955) Rhodopseudomonas palustris BisA53 4358997 YP_780000.1 CDS RPE_1066 NC_008435.1 1205016 1205786 D hypothetical protein 1205016..1205786 Rhodopseudomonas palustris BisA53 4358998 YP_780001.1 CDS RPE_1067 NC_008435.1 1205806 1207728 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(1205806..1207728) Rhodopseudomonas palustris BisA53 4358999 YP_780002.1 CDS RPE_1068 NC_008435.1 1208241 1208486 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(1208241..1208486) Rhodopseudomonas palustris BisA53 4359000 YP_780003.1 CDS RPE_1069 NC_008435.1 1208619 1209548 R PFAM: histone deacetylase superfamily; KEGG: rpc:RPC_1151 histone deacetylase superfamily; histone deacetylase superfamily protein complement(1208619..1209548) Rhodopseudomonas palustris BisA53 4360030 YP_780004.1 CDS RPE_1070 NC_008435.1 1209640 1211316 R PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: rpc:RPC_1152 5'-nucleotidase-like; 5'-nucleotidase domain-containing protein complement(1209640..1211316) Rhodopseudomonas palustris BisA53 4360031 YP_780005.1 CDS RPE_1071 NC_008435.1 1211470 1211931 D KEGG: rpc:RPC_1153 hypothetical protein; hypothetical protein 1211470..1211931 Rhodopseudomonas palustris BisA53 4360032 YP_780006.1 CDS RPE_1072 NC_008435.1 1212038 1214587 D PFAM: Carboxylesterase, type B; protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: rme:Rmet_5225 protein of unknown function DUF1214; carboxylesterase, type B 1212038..1214587 Rhodopseudomonas palustris BisA53 4360033 YP_780007.1 CDS RPE_1073 NC_008435.1 1214609 1215370 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpb:RPB_4455 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(1214609..1215370) Rhodopseudomonas palustris BisA53 4360034 YP_780008.1 CDS RPE_1074 NC_008435.1 1215437 1217218 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpc:RPC_1156 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(1215437..1217218) Rhodopseudomonas palustris BisA53 4360035 YP_780009.1 CDS RPE_1075 NC_008435.1 1217650 1219584 D PFAM: phage integrase family protein; KEGG: nha:Nham_0896 hypothetical protein; phage integrase family protein 1217650..1219584 Rhodopseudomonas palustris BisA53 4360037 YP_780010.1 CDS RPE_1076 NC_008435.1 1220174 1220431 R hypothetical protein complement(1220174..1220431) Rhodopseudomonas palustris BisA53 4360038 YP_780011.1 CDS RPE_1078 NC_008435.1 1221109 1222656 R PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: ret:RHE_PA00038 probable insertion sequence transposase protein; recombinase complement(1221109..1222656) Rhodopseudomonas palustris BisA53 4360040 YP_780012.1 CDS RPE_1079 NC_008435.1 1223075 1223362 D KEGG: mag:amb3325 transposase and inactivated derivative; hypothetical protein 1223075..1223362 Rhodopseudomonas palustris BisA53 4360041 YP_780013.1 CDS RPE_1080 NC_008435.1 1223359 1223742 D KEGG: mag:amb1129 hypothetical protein; hypothetical protein 1223359..1223742 Rhodopseudomonas palustris BisA53 4360042 YP_780014.1 CDS RPE_1081 NC_008435.1 1224242 1225255 R TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: bmb:BruAb1_1071 GalE-1, UDP-glucose 4-epimerase; UDP-glucose 4-epimerase complement(1224242..1225255) Rhodopseudomonas palustris BisA53 4360043 YP_780015.1 CDS RPE_1082 NC_008435.1 1225595 1225918 R hypothetical protein complement(1225595..1225918) Rhodopseudomonas palustris BisA53 4360044 YP_780016.1 CDS RPE_1083 NC_008435.1 1226010 1226762 R PFAM: metallophosphoesterase; KEGG: bja:bll2356 serine/threonine protein phosphatase I; metallophosphoesterase complement(1226010..1226762) Rhodopseudomonas palustris BisA53 4360045 YP_780017.1 CDS RPE_1084 NC_008435.1 1227143 1228918 D PFAM: peptidase C2, calpain; KEGG: ana:all1084 unknown protein; peptidase C2, calpain 1227143..1228918 Rhodopseudomonas palustris BisA53 4360046 YP_780018.1 CDS RPE_1085 NC_008435.1 1229279 1231396 D KEGG: bja:bll6293 HlyB/MsbA family ABC transporter; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter, transmembrane region; ABC transporter related; peptidase C39, bacteriocin processing; SMART: AAA ATPase; type I secretion system ATPase 1229279..1231396 Rhodopseudomonas palustris BisA53 4360201 YP_780019.1 CDS RPE_1086 NC_008435.1 1231399 1232835 D TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: bja:bll6292 probable Hemolysin secretion protein D; HlyD family type I secretion membrane fusion protein 1231399..1232835 Rhodopseudomonas palustris BisA53 4360202 YP_780020.1 CDS RPE_1087 NC_008435.1 1233659 1233976 D hypothetical protein 1233659..1233976 Rhodopseudomonas palustris BisA53 4360203 YP_780021.1 CDS RPE_1088 NC_008435.1 1234240 1235067 R KEGG: ppu:PP3128 exopolysaccharide biosynthesis/transport protein, putative; exopolysaccharide biosynthesis/transport protein complement(1234240..1235067) Rhodopseudomonas palustris BisA53 4360204 YP_780022.1 CDS RPE_1089 NC_008435.1 1235103 1236425 R PFAM: lipopolysaccharide biosynthesis; KEGG: ppu:PP3127 exopolysaccharide transport protein, putative; lipopolysaccharide biosynthesis protein complement(1235103..1236425) Rhodopseudomonas palustris BisA53 4360205 YP_780023.1 CDS RPE_1090 NC_008435.1 1237442 1238284 D SMART: AAA ATPase; KEGG: sat:SYN_00778 general secretion pathway protein A; ATPase AAA 1237442..1238284 Rhodopseudomonas palustris BisA53 4360206 YP_780024.1 CDS RPE_1091 NC_008435.1 1238397 1238969 D PFAM: polysaccharide export protein; KEGG: gme:Gmet_1444 polysaccharide export protein; polysaccharide export protein 1238397..1238969 Rhodopseudomonas palustris BisA53 4360207 YP_780025.1 CDS RPE_1092 NC_008435.1 1239013 1240236 D hypothetical protein 1239013..1240236 Rhodopseudomonas palustris BisA53 4360208 YP_780026.1 CDS RPE_1093 NC_008435.1 1240306 1241196 R PFAM: sugar transferase; KEGG: bja:blr2358 probable glycosyl transferase; sugar transferase complement(1240306..1241196) Rhodopseudomonas palustris BisA53 4360209 YP_780027.1 CDS RPE_1094 NC_008435.1 1242247 1244454 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: jan:Jann_4236 tetratricopeptide TPR_2; hypothetical protein complement(1242247..1244454) Rhodopseudomonas palustris BisA53 4360210 YP_780028.1 CDS RPE_1095 NC_008435.1 1244664 1246286 R TIGRFAM: eight transmembrane protein EpsH; KEGG: gme:Gmet_1503 hypothetical protein; eight transmembrane protein EpsH complement(1244664..1246286) Rhodopseudomonas palustris BisA53 4360211 YP_780029.1 CDS RPE_1096 NC_008435.1 1246283 1247416 R TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; glycosyl transferase WecB/TagA/CpsF; KEGG: gka:GK3311 teichoic acid biosynthesis; anti-sigma-factor antagonist complement(1246283..1247416) Rhodopseudomonas palustris BisA53 4360212 YP_780030.1 CDS RPE_1097 NC_008435.1 1247883 1249088 R PFAM: glycosyl transferase, family 2; KEGG: ppu:PP3140 glycosyl transferase, group 2 family protein; glycosyl transferase family protein complement(1247883..1249088) Rhodopseudomonas palustris BisA53 4360213 YP_780031.1 CDS RPE_1098 NC_008435.1 1249262 1250233 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: ccr:CC1146 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase complement(1249262..1250233) Rhodopseudomonas palustris BisA53 4360214 YP_780032.1 CDS RPE_1099 NC_008435.1 1250681 1251439 R TIGRFAM: methyltransferase FkbM family; KEGG: fra:Francci3_4064 methyltransferase FkbM; FkbM family methyltransferase complement(1250681..1251439) Rhodopseudomonas palustris BisA53 4360215 YP_780033.1 CDS RPE_1100 NC_008435.1 1251718 1252446 R KEGG: mca:MCA1423 glycosyl transferase, family 25; glycosyl transferase family protein complement(1251718..1252446) Rhodopseudomonas palustris BisA53 4360216 YP_780034.1 CDS RPE_1101 NC_008435.1 1252644 1253846 R PFAM: glycosyl transferase, group 1; KEGG: ppu:PP3139 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase complement(1252644..1253846) Rhodopseudomonas palustris BisA53 4360217 YP_780035.1 CDS RPE_1102 NC_008435.1 1253859 1254890 R PFAM: glycosyl transferase, family 2; KEGG: ppu:PP3137 glycosyl transferase, group 2 family protein; glycosyl transferase family protein complement(1253859..1254890) Rhodopseudomonas palustris BisA53 4359732 YP_780036.1 CDS RPE_1103 NC_008435.1 1254880 1256016 R PFAM: glycosyl transferase, group 1; KEGG: ava:Ava_0842 glycosyl transferase, group 1; group 1 glycosyl transferase complement(1254880..1256016) Rhodopseudomonas palustris BisA53 4359733 YP_780037.1 CDS RPE_1104 NC_008435.1 1256372 1256896 D KEGG: nwi:Nwi_0542 hypothetical protein; hypothetical protein 1256372..1256896 Rhodopseudomonas palustris BisA53 4359734 YP_780038.1 CDS RPE_1105 NC_008435.1 1256962 1258311 R hypothetical protein complement(1256962..1258311) Rhodopseudomonas palustris BisA53 4359735 YP_780039.1 CDS RPE_1106 NC_008435.1 1258568 1258849 D hypothetical protein 1258568..1258849 Rhodopseudomonas palustris BisA53 4359736 YP_780040.1 CDS RPE_1107 NC_008435.1 1258859 1260208 D hypothetical protein 1258859..1260208 Rhodopseudomonas palustris BisA53 4359737 YP_780041.1 CDS RPE_1109 NC_008435.1 1260952 1263954 D KEGG: xcc:XCC1752 cellulase; hypothetical protein 1260952..1263954 Rhodopseudomonas palustris BisA53 4359739 YP_780042.1 CDS RPE_1110 NC_008435.1 1263917 1264984 R PFAM: acyltransferase 3; KEGG: ade:Adeh_2069 acyltransferase 3; acyltransferase 3 complement(1263917..1264984) Rhodopseudomonas palustris BisA53 4359740 YP_780043.1 CDS RPE_1111 NC_008435.1 1265110 1266177 R PFAM: acyltransferase 3; KEGG: atc:AGR_L_3583 exopolysaccharide production protein ExoZ; acyltransferase 3 complement(1265110..1266177) Rhodopseudomonas palustris BisA53 4359741 YP_780044.1 CDS RPE_1112 NC_008435.1 1266804 1267322 R hypothetical protein complement(1266804..1267322) Rhodopseudomonas palustris BisA53 4359742 YP_780045.1 CDS RPE_1113 NC_008435.1 1268149 1268928 D TIGRFAM: methyltransferase FkbM family; KEGG: nwi:Nwi_2400 methyltransferase FkbM; FkbM family methyltransferase 1268149..1268928 Rhodopseudomonas palustris BisA53 4359743 YP_780046.1 CDS RPE_1114 NC_008435.1 1269132 1270130 D PFAM: acyltransferase 3; KEGG: ppu:PP2377 acetyltransferase Act, putative; acyltransferase 3 1269132..1270130 Rhodopseudomonas palustris BisA53 4359744 YP_780047.1 CDS RPE_1115 NC_008435.1 1270157 1271254 R KEGG: syn:slr0386 hypothetical protein; hypothetical protein complement(1270157..1271254) Rhodopseudomonas palustris BisA53 4359745 YP_780048.1 CDS RPE_1116 NC_008435.1 1271259 1272749 R PFAM: membrane bound O-acyl transferase, MBOAT family protein; KEGG: dar:Daro_2421 membrane bound O-acyl transferase, MBOAT; membrane bound O-acyl transferase, MBOAT family protein complement(1271259..1272749) Rhodopseudomonas palustris BisA53 4359746 YP_780049.1 CDS RPE_1117 NC_008435.1 1272943 1273431 R KEGG: nha:Nham_4212 integrase, catalytic region; integrase, catalytic region complement(1272943..1273431) Rhodopseudomonas palustris BisA53 4359747 YP_780050.1 CDS RPE_1118 NC_008435.1 1273723 1274121 R KEGG: nha:Nham_4211 transposase IS3/IS911; hypothetical protein complement(1273723..1274121) Rhodopseudomonas palustris BisA53 4359748 YP_780051.1 CDS RPE_1119 NC_008435.1 1274506 1274772 D hypothetical protein 1274506..1274772 Rhodopseudomonas palustris BisA53 4359749 YP_780052.1 CDS RPE_1120 NC_008435.1 1275093 1276400 D PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: bja:bll8129 UDP-glucose 6-dehydrogenase; UDP-glucose 6-dehydrogenase 1275093..1276400 Rhodopseudomonas palustris BisA53 4358695 YP_780053.1 CDS RPE_1121 NC_008435.1 1279202 1279687 D PFAM: regulatory protein, LuxR; KEGG: rpd:RPD_2373 regulatory protein, LuxR; LuxR family transcriptional regulator 1279202..1279687 Rhodopseudomonas palustris BisA53 4358696 YP_780054.1 CDS RPE_1122 NC_008435.1 1279766 1280068 R PFAM: type IV pilus assembly PilZ; KEGG: rpd:RPD_3053 type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(1279766..1280068) Rhodopseudomonas palustris BisA53 4358697 YP_780055.1 CDS RPE_1123 NC_008435.1 1280181 1281104 R KEGG: bja:bll6535 hypothetical protein; hypothetical protein complement(1280181..1281104) Rhodopseudomonas palustris BisA53 4358698 YP_780056.1 CDS RPE_1124 NC_008435.1 1281447 1281818 R KEGG: rpa:RPA4550 hypothetical protein; hypothetical protein complement(1281447..1281818) Rhodopseudomonas palustris BisA53 4358699 YP_780057.1 CDS RPE_1125 NC_008435.1 1283506 1285092 R PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpb:RPB_3063 ATPase; ATPase complement(1283506..1285092) Rhodopseudomonas palustris BisA53 4358700 YP_780058.1 CDS RPE_1126 NC_008435.1 1285089 1285487 R KEGG: rpb:RPB_3062 hypothetical protein; hypothetical protein complement(1285089..1285487) Rhodopseudomonas palustris BisA53 4358701 YP_780059.1 CDS RPE_1127 NC_008435.1 1286101 1286880 R KEGG: rpb:RPB_3061 hypothetical protein; hypothetical protein complement(1286101..1286880) Rhodopseudomonas palustris BisA53 4358702 YP_780060.1 CDS RPE_1128 NC_008435.1 1286891 1287460 R PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rpb:RPB_3060 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 factor complement(1286891..1287460) Rhodopseudomonas palustris BisA53 4358703 YP_780061.1 CDS RPE_1129 NC_008435.1 1287789 1288100 R KEGG: rpb:RPB_3059 hypothetical protein; hypothetical protein complement(1287789..1288100) Rhodopseudomonas palustris BisA53 4358704 YP_780062.1 CDS RPE_1130 NC_008435.1 1288378 1288764 R hypothetical protein complement(1288378..1288764) Rhodopseudomonas palustris BisA53 4358705 YP_780063.1 CDS RPE_1131 NC_008435.1 1289374 1289784 D PFAM: transposase IS3/IS911 family protein; KEGG: nha:Nham_2997 transposase IS3/IS911; transposase IS3/IS911 family protein 1289374..1289784 Rhodopseudomonas palustris BisA53 4358706 YP_780064.1 CDS RPE_1132 NC_008435.1 1289953 1290351 D PFAM: transposase IS3/IS911 family protein; KEGG: bja:blr0034 putative transposase; transposase IS3/IS911 family protein 1289953..1290351 Rhodopseudomonas palustris BisA53 4358707 YP_780065.1 CDS RPE_1133 NC_008435.1 1290348 1290695 D PFAM: IS66 Orf2 family protein; KEGG: mag:amb0402 transposase and inactivated derivative; IS66 Orf2 family protein 1290348..1290695 Rhodopseudomonas palustris BisA53 4358708 YP_780066.1 CDS RPE_1134 NC_008435.1 1290769 1292355 D PFAM: transposase IS66; KEGG: mag:amb3325 transposase and inactivated derivative; transposase IS66 1290769..1292355 Rhodopseudomonas palustris BisA53 4358709 YP_780067.1 CDS RPE_1135 NC_008435.1 1292523 1292906 R KEGG: mag:amb1129 hypothetical protein; hypothetical protein complement(1292523..1292906) Rhodopseudomonas palustris BisA53 4358710 YP_780068.1 CDS RPE_1136 NC_008435.1 1292903 1293190 R KEGG: mag:amb3325 transposase and inactivated derivative; hypothetical protein complement(1292903..1293190) Rhodopseudomonas palustris BisA53 4358711 YP_780069.1 CDS RPE_1137 NC_008435.1 1293722 1293991 D KEGG: atc:AGR_L_547 hypothetical protein; hypothetical protein 1293722..1293991 Rhodopseudomonas palustris BisA53 4357705 YP_780070.1 CDS RPE_1138 NC_008435.1 1294046 1296043 R KEGG: hch:HCH_02732 predicted acyltransferase; hypothetical protein complement(1294046..1296043) Rhodopseudomonas palustris BisA53 4357706 YP_780071.1 CDS RPE_1139 NC_008435.1 1298629 1299189 R KEGG: nha:Nham_4483 ArdC gene in pSa(IncW plasmid)-like; hypothetical protein complement(1298629..1299189) Rhodopseudomonas palustris BisA53 4357707 YP_780072.1 CDS RPE_1140 NC_008435.1 1299217 1299711 R KEGG: rpc:RPC_3939 transposase, mutator type; transposase, mutator type complement(1299217..1299711) Rhodopseudomonas palustris BisA53 4357708 YP_780073.1 CDS RPE_1141 NC_008435.1 1299783 1301633 D PFAM: transposase, mutator type; transposase, IS4 family protein; KEGG: rpc:RPC_3939 transposase, mutator type; transposase, mutator type 1299783..1301633 Rhodopseudomonas palustris BisA53 4357709 YP_780074.1 CDS RPE_1142 NC_008435.1 1301661 1301900 D KEGG: bja:blr3893 putative transposase; hypothetical protein 1301661..1301900 Rhodopseudomonas palustris BisA53 4357710 YP_780075.1 CDS RPE_1143 NC_008435.1 1302584 1303372 R hypothetical protein complement(1302584..1303372) Rhodopseudomonas palustris BisA53 4357711 YP_780076.1 CDS RPE_1144 NC_008435.1 1303525 1303812 D KEGG: rpc:RPC_3552 hypothetical protein; hypothetical protein 1303525..1303812 Rhodopseudomonas palustris BisA53 4357712 YP_780077.1 CDS RPE_1145 NC_008435.1 1303813 1304310 D PFAM: GCN5-related N-acetyltransferase; KEGG: rpa:RPA4135 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1303813..1304310 Rhodopseudomonas palustris BisA53 4357713 YP_780078.1 CDS fliI NC_008435.1 1304368 1305699 R involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase complement(1304368..1305699) Rhodopseudomonas palustris BisA53 4357714 YP_780079.1 CDS flgF NC_008435.1 1305727 1306458 R FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; flagellar basal body rod protein FlgF complement(1305727..1306458) Rhodopseudomonas palustris BisA53 4357715 YP_780080.1 CDS RPE_1148 NC_008435.1 1306464 1307237 R PFAM: protein of unknown function DUF1217; KEGG: bja:blr6883 hypothetical protein; hypothetical protein complement(1306464..1307237) Rhodopseudomonas palustris BisA53 4357716 YP_780081.1 CDS RPE_1149 NC_008435.1 1307451 1308302 D With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 1307451..1308302 Rhodopseudomonas palustris BisA53 4357717 YP_780082.1 CDS RPE_1150 NC_008435.1 1308410 1309237 D PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: rpc:RPC_1089 flagellar motor switch protein FliM; flagellar motor switch protein FliM 1308410..1309237 Rhodopseudomonas palustris BisA53 4357718 YP_780083.1 CDS RPE_1151 NC_008435.1 1309218 1309505 D KEGG: rpc:RPC_1090 hypothetical protein; hypothetical protein 1309218..1309505 Rhodopseudomonas palustris BisA53 4357719 YP_780084.1 CDS RPE_1152 NC_008435.1 1309557 1309955 D TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: rpc:RPC_1091 surface presentation of antigens (SpoA) protein; flagellar motor switch protein FliN 1309557..1309955 Rhodopseudomonas palustris BisA53 4357720 YP_780085.1 CDS RPE_1153 NC_008435.1 1309968 1311002 D PFAM: flagellar motor switch protein FliG; KEGG: rpc:RPC_1092 flagellar motor switch protein FliG; flagellar motor switch protein FliG 1309968..1311002 Rhodopseudomonas palustris BisA53 4357721 YP_780086.1 CDS flhB NC_008435.1 1311015 1312091 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thin flagella; flagellar biosynthesis protein FlhB 1311015..1312091 Rhodopseudomonas palustris BisA53 4357722 YP_780087.1 CDS flgB NC_008435.1 1312368 1312772 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium have one thick flagellum and several thin flagella; the proteins in this cluster are associated with the thin flagella; flagellar basal body rod protein FlgB 1312368..1312772 Rhodopseudomonas palustris BisA53 4359036 YP_780088.1 CDS flgC NC_008435.1 1312784 1313200 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; flagellar basal body rod protein FlgC 1312784..1313200 Rhodopseudomonas palustris BisA53 4359037 YP_780089.1 CDS fliE NC_008435.1 1313203 1313523 D forms a junction between the M-ring and FlgB during flagella biosynthesis; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; flagellar hook-basal body protein FliE 1313203..1313523 Rhodopseudomonas palustris BisA53 4359038 YP_780090.1 CDS flgG NC_008435.1 1313532 1314320 D makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; flagellar basal body rod protein FlgG 1313532..1314320 Rhodopseudomonas palustris BisA53 4359039 YP_780091.1 CDS flgA NC_008435.1 1314336 1314821 D required for the assembly of the flagellar basal body P-ring; Bradyrhizobium japonicum has two types of flagella, a single thick flagella and a few thin flagella; the protein in this cluster is associated with the thin flagella; flagellar basal body P-ring biosynthesis protein FlgA 1314336..1314821 Rhodopseudomonas palustris BisA53 4359040 YP_780092.1 CDS flgI NC_008435.1 1314818 1315921 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thin flagella; flagellar basal body P-ring protein 1314818..1315921 Rhodopseudomonas palustris BisA53 4359041 YP_780093.1 CDS RPE_1161 NC_008435.1 1315987 1316664 D KEGG: rpc:RPC_1100 hypothetical protein; hypothetical protein 1315987..1316664 Rhodopseudomonas palustris BisA53 4359042 YP_780094.1 CDS flgH NC_008435.1 1316661 1317365 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thin flagella; flagellar basal body L-ring protein 1316661..1317365 Rhodopseudomonas palustris BisA53 4359043 YP_780095.1 CDS RPE_1163 NC_008435.1 1317365 1317856 D PFAM: flagellar basal body-associated protein FliL; KEGG: rpc:RPC_1102 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL 1317365..1317856 Rhodopseudomonas palustris BisA53 4359044 YP_780096.1 CDS fliP NC_008435.1 1317853 1318587 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thin flagellum; flagellar biosynthesis protein FliP 1317853..1318587 Rhodopseudomonas palustris BisA53 4359045 YP_780097.1 CDS RPE_1165 NC_008435.1 1318789 1319718 D structural flagella protein; Bradyrhizobium has 2 types of flagella, thick and thin; the proteins in this cluster have been identified as making up the thin flagella and may be involved in swarming; flagellin 1318789..1319718 Rhodopseudomonas palustris BisA53 4359046 YP_780098.1 CDS fliF NC_008435.1 1319852 1321486 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1319852..1321486 Rhodopseudomonas palustris BisA53 4359047 YP_780099.1 CDS RPE_1167 NC_008435.1 1321483 1322127 D KEGG: rpc:RPC_1106 hypothetical protein; hypothetical protein 1321483..1322127 Rhodopseudomonas palustris BisA53 4359048 YP_780100.1 CDS motB NC_008435.1 1322129 1323400 D with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 1322129..1323400 Rhodopseudomonas palustris BisA53 4359049 YP_780101.1 CDS RPE_1169 NC_008435.1 1323397 1324584 D a periplasmic protein that interacts with and stabilizes MotB; in Rhizobium, interactions between MotB and MotC at the periplasmic surface of the motor control the energy flux or the energy coupling that drives flagellar rotation; chemotaxis protein 1323397..1324584 Rhodopseudomonas palustris BisA53 4359050 YP_780102.1 CDS RPE_1170 NC_008435.1 1324812 1325789 D PFAM: flagellar hook-length control protein; KEGG: rpc:RPC_1109 putative chemotaxis MotD protein; flagellar hook-length control protein 1324812..1325789 Rhodopseudomonas palustris BisA53 4359051 YP_780103.1 CDS RPE_1171 NC_008435.1 1325803 1326318 D PFAM: Lytic transglycosylase, catalytic; KEGG: rpc:RPC_1110 lytic transglycosylase, catalytic; lytic transglycosylase 1325803..1326318 Rhodopseudomonas palustris BisA53 4359052 YP_780104.1 CDS flgE NC_008435.1 1326393 1327628 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1326393..1327628 Rhodopseudomonas palustris BisA53 4358897 YP_780105.1 CDS flgK NC_008435.1 1327659 1329131 D with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1327659..1329131 Rhodopseudomonas palustris BisA53 4358898 YP_780106.1 CDS flgL NC_008435.1 1329136 1330179 D with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thin flagella; flagellar hook-associated protein FlgL 1329136..1330179 Rhodopseudomonas palustris BisA53 4358899 YP_780107.1 CDS flaF NC_008435.1 1330216 1330563 D acts as an activator or flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; flagellar biosynthesis regulatory protein FlaF 1330216..1330563 Rhodopseudomonas palustris BisA53 4358900 YP_780108.1 CDS flbT NC_008435.1 1330560 1330997 D post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA: Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; flagellar biosynthesis repressor FlbT 1330560..1330997 Rhodopseudomonas palustris BisA53 4358901 YP_780109.1 CDS flgD NC_008435.1 1330999 1331406 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; flagellar basal body rod modification protein 1330999..1331406 Rhodopseudomonas palustris BisA53 4358902 YP_780110.1 CDS fliQ NC_008435.1 1331410 1331676 D FliQ, with proteins FliP and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the proteins in this cluster are associated with the thin flagella; flagellar biosynthesis protein FliQ 1331410..1331676 Rhodopseudomonas palustris BisA53 4358903 YP_780111.1 CDS flhA NC_008435.1 1331752 1333839 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1331752..1333839 Rhodopseudomonas palustris BisA53 4358904 YP_780112.1 CDS fliR NC_008435.1 1333836 1334582 D FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium has one thick and several thin flagella; the Bradyrhizobium protein in this cluster are associated with the thin flagella; flagellar biosynthesis protein FliR 1333836..1334582 Rhodopseudomonas palustris BisA53 4358905 YP_780113.1 CDS RPE_1181 NC_008435.1 1334589 1334984 D KEGG: rpc:RPC_1120 hypothetical protein; hypothetical protein 1334589..1334984 Rhodopseudomonas palustris BisA53 4358906 YP_780114.1 CDS RPE_1182 NC_008435.1 1335024 1335512 D KEGG: rpc:RPC_1121 hypothetical protein; hypothetical protein 1335024..1335512 Rhodopseudomonas palustris BisA53 4358907 YP_780115.1 CDS RPE_1183 NC_008435.1 1335544 1336023 D KEGG: rpc:RPC_1122 hypothetical protein; hypothetical protein 1335544..1336023 Rhodopseudomonas palustris BisA53 4358908 YP_780116.1 CDS RPE_1184 NC_008435.1 1336026 1336478 D KEGG: rpc:RPC_1123 hypothetical protein; hypothetical protein 1336026..1336478 Rhodopseudomonas palustris BisA53 4358909 YP_780117.1 CDS RPE_1185 NC_008435.1 1336444 1337157 R PFAM: transcriptional regulator domain protein; KEGG: rpc:RPC_1124 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(1336444..1337157) Rhodopseudomonas palustris BisA53 4358910 YP_780118.1 CDS RPE_1186 NC_008435.1 1337846 1338754 R KEGG: rpc:RPC_1125 hypothetical protein; hypothetical protein complement(1337846..1338754) Rhodopseudomonas palustris BisA53 4358911 YP_780119.1 CDS RPE_1187 NC_008435.1 1338970 1339275 D KEGG: rpc:RPC_1126 hypothetical protein; hypothetical protein 1338970..1339275 Rhodopseudomonas palustris BisA53 4358912 YP_780120.1 CDS RPE_1188 NC_008435.1 1339421 1340488 R PFAM: glycosyl transferase, group 1; KEGG: rpc:RPC_3209 glycosyl transferase, group 1; group 1 glycosyl transferase complement(1339421..1340488) Rhodopseudomonas palustris BisA53 4358913 YP_780121.1 CDS RPE_1189 NC_008435.1 1340982 1343183 D PFAM: Amylo-alpha-1,6-glucosidase; KEGG: rpc:RPC_3211 amylo-alpha-1,6-glucosidase; amylo-alpha-1,6-glucosidase 1340982..1343183 Rhodopseudomonas palustris BisA53 4358914 YP_780122.1 CDS RPE_1190 NC_008435.1 1343352 1344503 D PFAM: major facilitator superfamily MFS_1; KEGG: rpc:RPC_3213 major facilitator superfamily MFS_1; major facilitator transporter 1343352..1344503 Rhodopseudomonas palustris BisA53 4358748 YP_780123.1 CDS RPE_1191 NC_008435.1 1346374 1346673 D hypothetical protein 1346374..1346673 Rhodopseudomonas palustris BisA53 4358749 YP_780124.1 CDS RPE_1192 NC_008435.1 1346675 1347040 D PFAM: response regulator receiver; KEGG: gme:Gmet_2428 response regulator receiver domain protein (CheY-like); response regulator receiver protein 1346675..1347040 Rhodopseudomonas palustris BisA53 4358750 YP_780125.1 CDS RPE_1193 NC_008435.1 1347031 1349172 D PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: ccr:CC0433 chemotaxis protein CheA; CheA signal transduction histidine kinase 1347031..1349172 Rhodopseudomonas palustris BisA53 4358751 YP_780126.1 CDS RPE_1194 NC_008435.1 1349222 1349704 D PFAM: CheW domain protein; KEGG: zmo:ZMO0078 chemotaxis protein; CheW protein 1349222..1349704 Rhodopseudomonas palustris BisA53 4358752 YP_780127.1 CDS RPE_1195 NC_008435.1 1349754 1352486 D KEGG: vch:VC0098 methyl-accepting chemotaxis protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 1349754..1352486 Rhodopseudomonas palustris BisA53 4358753 YP_780128.1 CDS RPE_1196 NC_008435.1 1352555 1353382 D PFAM: MCP methyltransferase, CheR-type; KEGG: sde:Sde_3104 biotin biosynthesis protein BioC; chemotaxis protein CheR 1352555..1353382 Rhodopseudomonas palustris BisA53 4358754 YP_780129.1 CDS RPE_1197 NC_008435.1 1353379 1354020 D PFAM: CheD family protein; KEGG: tbd:Tbd_1616 CheD, stimulates methylation of MCP proteins; MCP proteins methylation stimulator CheD 1353379..1354020 Rhodopseudomonas palustris BisA53 4358755 YP_780130.1 CDS RPE_1198 NC_008435.1 1354029 1355090 D PFAM: CheB methylesterase; response regulator receiver; KEGG: bpa:BPP1476 protein-glutamate methylesterase; response regulator receiver modulated CheB methylesterase 1354029..1355090 Rhodopseudomonas palustris BisA53 4358756 YP_780131.1 CDS RPE_1199 NC_008435.1 1355094 1356233 D PFAM: chemotaxis sensory transducer; KEGG: cvi:CV2646 probable methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1355094..1356233 Rhodopseudomonas palustris BisA53 4358757 YP_780132.1 CDS RPE_1200 NC_008435.1 1356243 1356542 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mag:amb0579 anti-anti-sigma regulatory factor; anti-sigma-factor antagonist 1356243..1356542 Rhodopseudomonas palustris BisA53 4358758 YP_780133.1 CDS RPE_1201 NC_008435.1 1356547 1357203 D KEGG: mag:amb2658 hypothetical protein; putative anti-sigma regulatory factor 1356547..1357203 Rhodopseudomonas palustris BisA53 4358759 YP_780134.1 CDS RPE_1202 NC_008435.1 1357200 1358525 D PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: mag:amb2659 serine phosphatase RsbU; response regulator receiver modulated serine phosphatase 1357200..1358525 Rhodopseudomonas palustris BisA53 4358760 YP_780135.1 CDS RPE_1203 NC_008435.1 1358522 1358896 D PFAM: Hpt domain protein; putative CheA signal transduction histidine kinases 1358522..1358896 Rhodopseudomonas palustris BisA53 4358761 YP_780136.1 CDS RPE_1204 NC_008435.1 1358896 1362015 D KEGG: dar:Daro_3006 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; multi-sensor hybrid histidine kinase 1358896..1362015 Rhodopseudomonas palustris BisA53 4358762 YP_780137.1 CDS RPE_1205 NC_008435.1 1362021 1362857 R KEGG: rpc:RPC_2950 hypothetical protein; hypothetical protein complement(1362021..1362857) Rhodopseudomonas palustris BisA53 4358763 YP_780138.1 CDS RPE_1206 NC_008435.1 1363151 1363507 R SMART: Rhodanese domain protein; KEGG: rpb:RPB_1051 rhodanese-like; rhodanese domain-containing protein complement(1363151..1363507) Rhodopseudomonas palustris BisA53 4358764 YP_780139.1 CDS RPE_1207 NC_008435.1 1364012 1364539 D TIGRFAM: Twin-arginine translocation pathway signal; ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: rpc:RPC_1923 ubiquinol-cytochrome c reductase, iron-sulfur subunit; ubiquinol-cytochrome c reductase, iron-sulfur subunit 1364012..1364539 Rhodopseudomonas palustris BisA53 4358932 YP_780140.1 CDS RPE_1208 NC_008435.1 1364635 1365012 D KEGG: rpd:RPD_4203 nitrogen fixation-related protein; nitrogen fixation-like protein 1364635..1365012 Rhodopseudomonas palustris BisA53 4358933 YP_780141.1 CDS RPE_1209 NC_008435.1 1365151 1365465 D hypothetical protein 1365151..1365465 Rhodopseudomonas palustris BisA53 4358934 YP_780142.1 CDS RPE_1210 NC_008435.1 1365554 1366918 R PFAM: VWA containing CoxE family protein; KEGG: rpb:RPB_0718 VWA containing CoxE-like; VWA containing CoxE family protein complement(1365554..1366918) Rhodopseudomonas palustris BisA53 4358935 YP_780143.1 CDS RPE_1211 NC_008435.1 1366918 1367865 R PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpd:RPD_0615 ATPase associated with various cellular activities, AAA_5; ATPase complement(1366918..1367865) Rhodopseudomonas palustris BisA53 4358936 YP_780144.1 CDS RPE_1212 NC_008435.1 1368007 1368837 R PFAM: PaaX domain protein; PaaX domain protein, C-terminal domain; KEGG: rfr:Rfer_0524 hypothetical protein; PaaX domain-containing protein, C- domain complement(1368007..1368837) Rhodopseudomonas palustris BisA53 4358937 YP_780145.1 CDS RPE_1213 NC_008435.1 1369010 1370701 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_0523 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 1369010..1370701 Rhodopseudomonas palustris BisA53 4358938 YP_780146.1 CDS RPE_1214 NC_008435.1 1371162 1372232 D PFAM: NLPA lipoprotein; KEGG: rpd:RPD_2183 putative taurine transport system protein; NLPA lipoprotein 1371162..1372232 Rhodopseudomonas palustris BisA53 4358939 YP_780147.1 CDS RPE_1215 NC_008435.1 1372521 1373339 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpd:RPD_2184 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1372521..1373339 Rhodopseudomonas palustris BisA53 4358940 YP_780148.1 CDS RPE_1216 NC_008435.1 1373336 1374127 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_4534 ABC transporter related; ABC transporter-like protein 1373336..1374127 Rhodopseudomonas palustris BisA53 4358941 YP_780149.1 CDS RPE_1217 NC_008435.1 1374167 1375006 D KEGG: rpd:RPD_2186 hypothetical protein; hypothetical protein 1374167..1375006 Rhodopseudomonas palustris BisA53 4358942 YP_780150.1 CDS RPE_1218 NC_008435.1 1375003 1375644 D KEGG: rpa:RPA1406 hypothetical protein; hypothetical protein 1375003..1375644 Rhodopseudomonas palustris BisA53 4358943 YP_780151.1 CDS RPE_1219 NC_008435.1 1375647 1379195 D TIGRFAM: urea amidolyase related protein; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rpd:RPD_2188 allophanate hydrolase subunit 2; urea amidolyase-like protein 1375647..1379195 Rhodopseudomonas palustris BisA53 4358944 YP_780152.1 CDS RPE_1220 NC_008435.1 1379195 1380988 D PFAM: Amidase; KEGG: ret:RHE_PE00117 putative amidase protein; amidase 1379195..1380988 Rhodopseudomonas palustris BisA53 4358945 YP_780153.1 CDS RPE_1221 NC_008435.1 1380972 1381169 R KEGG: rpc:RPC_2372 hypothetical protein; hypothetical protein complement(1380972..1381169) Rhodopseudomonas palustris BisA53 4358946 YP_780154.1 CDS RPE_1222 NC_008435.1 1381289 1381573 R KEGG: rpa:RPA0092 hypothetical protein; hypothetical protein complement(1381289..1381573) Rhodopseudomonas palustris BisA53 4358947 YP_780155.1 CDS RPE_1223 NC_008435.1 1381786 1382424 D PFAM: regulatory protein, TetR; KEGG: rpa:RPA0093 transcriptional regulator, TetR family; TetR family transcriptional regulator 1381786..1382424 Rhodopseudomonas palustris BisA53 4358948 YP_780156.1 CDS RPE_1224 NC_008435.1 1382557 1383480 D PFAM: PepSY-associated TM helix domain protein; KEGG: rpb:RPB_0123 PepSY-associated TM helix; PepSY-associated TM helix domain-containing protein 1382557..1383480 Rhodopseudomonas palustris BisA53 4358949 YP_780157.1 CDS RPE_1225 NC_008435.1 1383510 1384664 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rpa:RPA0095 putative multidrug efflux membrane fusion protein; RND family efflux transporter MFP subunit 1383510..1384664 Rhodopseudomonas palustris BisA53 4358816 YP_780158.1 CDS RPE_1226 NC_008435.1 1384668 1387835 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rpa:RPA0096 putative multidrug-efflux transport protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein 1384668..1387835 Rhodopseudomonas palustris BisA53 4358817 YP_780159.1 CDS RPE_1227 NC_008435.1 1387885 1388184 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: neu:NE0621 DUF176; antibiotic biosynthesis monooxygenase 1387885..1388184 Rhodopseudomonas palustris BisA53 4358818 YP_780160.1 CDS RPE_1228 NC_008435.1 1388181 1389371 D PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: rpb:RPB_0946 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 1388181..1389371 Rhodopseudomonas palustris BisA53 4358819 YP_780161.1 CDS RPE_1229 NC_008435.1 1390312 1391313 D PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: rpd:RPD_1160 NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH ubiquinone oxidoreductase, 20 kDa subunit 1390312..1391313 Rhodopseudomonas palustris BisA53 4358820 YP_780162.1 CDS RPE_1230 NC_008435.1 1391310 1392755 D PFAM: nickel-dependent hydrogenase, large subunit; KEGG: rpd:RPD_1161 nickel-dependent hydrogenase, large subunit; nickel-dependent hydrogenase, large subunit 1391310..1392755 Rhodopseudomonas palustris BisA53 4358821 YP_780163.1 CDS RPE_1231 NC_008435.1 1392989 1394104 D KEGG: rpd:RPD_1162 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; Twin-arginine translocation pathway signal; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein; hydrogenase (NiFe) small subunit HydA 1392989..1394104 Rhodopseudomonas palustris BisA53 4358822 YP_780164.1 CDS RPE_1232 NC_008435.1 1394123 1395916 D PFAM: nickel-dependent hydrogenase, large subunit; KEGG: rpc:RPC_3771 nickel-dependent hydrogenase, large subunit; nickel-dependent hydrogenase, large subunit 1394123..1395916 Rhodopseudomonas palustris BisA53 4358823 YP_780165.1 CDS RPE_1233 NC_008435.1 1395994 1396719 D TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: rpa:RPA0964 Ni/Fe-hydrogenase 1 B-type cytochrome subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit 1395994..1396719 Rhodopseudomonas palustris BisA53 4358824 YP_780166.1 CDS RPE_1234 NC_008435.1 1397044 1397643 D TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; hydrogenase maturation peptidase superfamily; PFAM: peptidase M52, hydrogen uptake protein; KEGG: rpa:RPA0965 hydrogenase maturation protein hupD; hydrogenase expression/formation protein 1397044..1397643 Rhodopseudomonas palustris BisA53 4358825 YP_780167.1 CDS RPE_1235 NC_008435.1 1397653 1397952 D TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: rpd:RPD_1167 hydrogenase assembly chaperone HypC/HupF; hydrogenase assembly chaperone HypC/HupF 1397653..1397952 Rhodopseudomonas palustris BisA53 4358826 YP_780168.1 CDS RPE_1236 NC_008435.1 1398204 1398611 D PFAM: hydrogenase-1 expression HyaE; KEGG: rpd:RPD_1168 hydrogenase-1 expression HyaE; hydrogenase-1 expression HyaE 1398204..1398611 Rhodopseudomonas palustris BisA53 4358827 YP_780169.1 CDS RPE_1237 NC_008435.1 1398608 1399480 D PFAM: HupH hydrogenase expression protein; KEGG: rpd:RPD_1169 HupH hydrogenase expression protein; HupH hydrogenase expression protein 1398608..1399480 Rhodopseudomonas palustris BisA53 4358828 YP_780170.1 CDS RPE_1238 NC_008435.1 1399477 1399689 D PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: rpd:RPD_1170 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 1399477..1399689 Rhodopseudomonas palustris BisA53 4358829 YP_780171.1 CDS RPE_1239 NC_008435.1 1399679 1400215 D KEGG: rpd:RPD_1171 putative hydrogenase expression/formation protein HupJ; putative hydrogenase expression/formation protein HupJ 1399679..1400215 Rhodopseudomonas palustris BisA53 4358830 YP_780172.1 CDS RPE_1240 NC_008435.1 1400212 1401324 D KEGG: rpd:RPD_1172 coenzyme F420-reducing hydrogenase alpha subunit-like; coenzyme F420-reducing hydrogenase subunit alpha-like protein 1400212..1401324 Rhodopseudomonas palustris BisA53 4358831 YP_780173.1 CDS RPE_1241 NC_008435.1 1401317 1401658 D TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis, HypA; KEGG: rpc:RPC_3762 hydrogenase nickel insertion protein HypA; hydrogenase nickel incorporation protein HypA 1401317..1401658 Rhodopseudomonas palustris BisA53 4358832 YP_780174.1 CDS RPE_1242 NC_008435.1 1401658 1402632 D TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: rpd:RPD_1174 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB 1401658..1402632 Rhodopseudomonas palustris BisA53 4359976 YP_780175.1 CDS RPE_1243 NC_008435.1 1402637 1404892 D TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain; zinc finger, HypF domain protein; KEGG: rpd:RPD_1175 (NiFe) hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF 1402637..1404892 Rhodopseudomonas palustris BisA53 4359977 YP_780176.1 CDS RPE_1244 NC_008435.1 1404902 1405138 D TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: rpc:RPC_3760 hydrogenase assembly chaperone HypC/HupF; hydrogenase assembly chaperone HypC/HupF 1404902..1405138 Rhodopseudomonas palustris BisA53 4359978 YP_780177.1 CDS RPE_1245 NC_008435.1 1405135 1406277 D TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: rpa:RPA0977 hydrogenase expression/formation protein hypD; hydrogenase expression/formation protein HypD 1405135..1406277 Rhodopseudomonas palustris BisA53 4359979 YP_780178.1 CDS RPE_1246 NC_008435.1 1406274 1407320 D TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rpd:RPD_1178 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 1406274..1407320 Rhodopseudomonas palustris BisA53 4359980 YP_780179.1 CDS RPE_1247 NC_008435.1 1407348 1408823 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpd:RPD_1179 sigma-54 factor, interaction region; two component sigma54 specific Fis family transcriptional regulator 1407348..1408823 Rhodopseudomonas palustris BisA53 4359981 YP_780180.1 CDS RPE_1248 NC_008435.1 1408932 1410323 D KEGG: rpd:RPD_1180 ATP-binding region, ATPase-like; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 1408932..1410323 Rhodopseudomonas palustris BisA53 4359982 YP_780181.1 CDS RPE_1249 NC_008435.1 1410405 1410578 D KEGG: bja:bsl6114 hypothetical protein; hypothetical protein 1410405..1410578 Rhodopseudomonas palustris BisA53 4359983 YP_780182.1 CDS RPE_1250 NC_008435.1 1410895 1412115 D PFAM: metallophosphoesterase; KEGG: rpc:RPC_1185 metallophosphoesterase; metallophosphoesterase 1410895..1412115 Rhodopseudomonas palustris BisA53 4359984 YP_780183.1 CDS RPE_1251 NC_008435.1 1412112 1415567 D PFAM: SMC domain protein; KEGG: rpc:RPC_1186 hypothetical protein; SMC domain-containing protein 1412112..1415567 Rhodopseudomonas palustris BisA53 4359985 YP_780184.1 CDS RPE_1252 NC_008435.1 1415600 1415821 R KEGG: rpc:RPC_1277 hypothetical protein; hypothetical protein complement(1415600..1415821) Rhodopseudomonas palustris BisA53 4359986 YP_780185.1 CDS RPE_1253 NC_008435.1 1416049 1417686 R PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rpc:RPC_1191 thiamine pyrophosphate enzyme-like TPP binding region; thiamine pyrophosphate binding domain-containing protein complement(1416049..1417686) Rhodopseudomonas palustris BisA53 4359987 YP_780186.1 CDS RPE_1254 NC_008435.1 1417819 1418274 D PFAM: regulatory protein, AsnC/Lrp family; KEGG: rpc:RPC_1192 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 1417819..1418274 Rhodopseudomonas palustris BisA53 4359988 YP_780187.1 CDS RPE_1255 NC_008435.1 1418527 1418913 R PFAM: Rhodanese domain protein; KEGG: rpc:RPC_1202 rhodanese-like; rhodanese domain-containing protein complement(1418527..1418913) Rhodopseudomonas palustris BisA53 4359989 YP_780188.1 CDS RPE_1256 NC_008435.1 1419101 1419358 R KEGG: rpc:RPC_1208 hypothetical protein; hypothetical protein complement(1419101..1419358) Rhodopseudomonas palustris BisA53 4359990 YP_780189.1 CDS RPE_1257 NC_008435.1 1419422 1419949 R KEGG: rpd:RPD_4184 hypothetical protein; hypothetical protein complement(1419422..1419949) Rhodopseudomonas palustris BisA53 4359991 YP_780190.1 CDS RPE_1258 NC_008435.1 1420032 1422725 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rpb:RPB_1752 molybdopterin oxidoreductase; molybdopterin oxidoreductase complement(1420032..1422725) Rhodopseudomonas palustris BisA53 4359992 YP_780191.1 CDS RPE_1259 NC_008435.1 1422725 1424341 R Catalyzes the reduction of sulfite to sulfide, an essential step in the anaerobic sulfate-respiration pathway; sulfite reductase complement(1422725..1424341) Rhodopseudomonas palustris BisA53 4359993 YP_780192.1 CDS nirA NC_008435.1 1424338 1426098 R ferredoxin-dependent assimilatory nitrite reductase; ferredoxin-nitrite reductase complement(1424338..1426098) Rhodopseudomonas palustris BisA53 4358678 YP_780193.1 CDS RPE_1261 NC_008435.1 1426122 1427351 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: rpb:RPB_1755 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1426122..1427351) Rhodopseudomonas palustris BisA53 4358679 YP_780194.1 CDS RPE_1262 NC_008435.1 1427348 1427770 R PFAM: globin; KEGG: rpb:RPB_1756 globin; globin complement(1427348..1427770) Rhodopseudomonas palustris BisA53 4358680 YP_780195.1 CDS RPE_1263 NC_008435.1 1427966 1428760 R KEGG: rpb:RPB_1758 nitrate transport ATP-binding subunits C and D; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase; nitrate ABC transporter ATPases C and D complement(1427966..1428760) Rhodopseudomonas palustris BisA53 4358681 YP_780196.1 CDS RPE_1264 NC_008435.1 1428771 1429670 R TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_1759 nitrate transport permease; nitrate ABC transporter inner membrane subunit complement(1428771..1429670) Rhodopseudomonas palustris BisA53 4358682 YP_780197.1 CDS RPE_1265 NC_008435.1 1429732 1431039 R TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpb:RPB_1760 twin-arginine translocation pathway signal; ABC-type nitrate transport system periplasmic component complement(1429732..1431039) Rhodopseudomonas palustris BisA53 4358683 YP_780198.1 CDS RPE_1266 NC_008435.1 1431385 1432551 R KEGG: rpc:RPC_1210 putative nitrate transporter component, NrtA; putative nitrate transporter component, NrtA complement(1431385..1432551) Rhodopseudomonas palustris BisA53 4358684 YP_780199.1 CDS RPE_1267 NC_008435.1 1432548 1433132 R PFAM: response regulator receiver; ANTAR domain protein; KEGG: rpc:RPC_1211 response regulator receiver (CheY-like) and ANTAR domain protein; response regulator receiver/ANTAR domain-containing protein complement(1432548..1433132) Rhodopseudomonas palustris BisA53 4358685 YP_780200.1 CDS RPE_1268 NC_008435.1 1433347 1433733 D PFAM: BA14K family protein; KEGG: rpb:RPB_1022 BA14K-like; BA14K family protein 1433347..1433733 Rhodopseudomonas palustris BisA53 4358686 YP_780201.1 CDS RPE_1269 NC_008435.1 1433866 1434114 D KEGG: rpc:RPC_1220 hypothetical protein; hypothetical protein 1433866..1434114 Rhodopseudomonas palustris BisA53 4358687 YP_780202.1 CDS RPE_1270 NC_008435.1 1434257 1434433 D KEGG: rpb:RPB_4256 hypothetical protein; hypothetical protein 1434257..1434433 Rhodopseudomonas palustris BisA53 4358688 YP_780203.1 CDS RPE_1271 NC_008435.1 1434609 1434929 R KEGG: rpc:RPC_1225 hypothetical protein; hypothetical protein complement(1434609..1434929) Rhodopseudomonas palustris BisA53 4358689 YP_780204.1 CDS RPE_1272 NC_008435.1 1434993 1435406 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: xcv:XCV0196 putative glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(1434993..1435406) Rhodopseudomonas palustris BisA53 4358690 YP_780205.1 CDS RPE_1273 NC_008435.1 1435460 1437274 R KEGG: rpc:RPC_1226 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; malto-oligosyltrehalose trehalohydrolase complement(1435460..1437274) Rhodopseudomonas palustris BisA53 4358691 YP_780206.1 CDS RPE_1274 NC_008435.1 1437430 1439592 D KEGG: rpc:RPC_1227 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; glycogen debranching protein GlgX 1437430..1439592 Rhodopseudomonas palustris BisA53 4358692 YP_780207.1 CDS RPE_1275 NC_008435.1 1439711 1440085 D PFAM: response regulator receiver; KEGG: rpc:RPC_1228 response regulator receiver domain protein (CheY-like); response regulator receiver protein 1439711..1440085 Rhodopseudomonas palustris BisA53 4358693 YP_780208.1 CDS RPE_1276 NC_008435.1 1440280 1441080 D KEGG: rpc:RPC_1229 hypothetical protein; hypothetical protein 1440280..1441080 Rhodopseudomonas palustris BisA53 4358694 YP_780209.1 CDS RPE_1277 NC_008435.1 1441139 1441363 D KEGG: rpc:RPC_1230 hypothetical protein; hypothetical protein 1441139..1441363 Rhodopseudomonas palustris BisA53 4358660 YP_780210.1 CDS RPE_1278 NC_008435.1 1441402 1443615 R PFAM: glycosyl transferase, group 1; glycosyl transferase, family 20; KEGG: rpb:RPB_1021 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Alpha,alpha-trehalose-phosphate synthase complement(1441402..1443615) Rhodopseudomonas palustris BisA53 4358661 YP_780211.1 CDS RPE_1279 NC_008435.1 1443972 1444229 R hypothetical protein complement(1443972..1444229) Rhodopseudomonas palustris BisA53 4358662 YP_780212.1 CDS RPE_1280 NC_008435.1 1444563 1446014 D TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: csa:Csal_1795 anion transporter; anion transporter 1444563..1446014 Rhodopseudomonas palustris BisA53 4358663 YP_780213.1 CDS RPE_1281 NC_008435.1 1446202 1447851 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 1446202..1447851 Rhodopseudomonas palustris BisA53 4358664 YP_780214.1 CDS RPE_1282 NC_008435.1 1447996 1448709 D PFAM: regulatory protein, LuxR; Autoinducer-binding domain protein; KEGG: rpc:RPC_2210 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 1447996..1448709 Rhodopseudomonas palustris BisA53 4358665 YP_780215.1 CDS RPE_1283 NC_008435.1 1448841 1449761 D KEGG: rpc:RPC_2211 hypothetical protein; hypothetical protein 1448841..1449761 Rhodopseudomonas palustris BisA53 4358666 YP_780216.1 CDS RPE_1284 NC_008435.1 1450240 1450947 D KEGG: rpc:RPC_2214 hypothetical protein; hypothetical protein 1450240..1450947 Rhodopseudomonas palustris BisA53 4358667 YP_780217.1 CDS RPE_1285 NC_008435.1 1451028 1451900 D KEGG: rpc:RPC_2213 hypothetical protein; hypothetical protein 1451028..1451900 Rhodopseudomonas palustris BisA53 4358668 YP_780218.1 CDS RPE_1286 NC_008435.1 1451997 1452347 D TIGRFAM: putative addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: rpc:RPC_2215 putative transcriptional regulators, CopG/Arc/MetJ DNA-binding domain; CopG/Arc/MetJ family transcriptional regulator 1451997..1452347 Rhodopseudomonas palustris BisA53 4358669 YP_780219.1 CDS RPE_1287 NC_008435.1 1452319 1453059 D PFAM: NnrUfamily protein; KEGG: rpa:RPA1485 putative NnrU protein; NnrU family protein 1452319..1453059 Rhodopseudomonas palustris BisA53 4358670 YP_780220.1 CDS RPE_1288 NC_008435.1 1453178 1454398 D PFAM: NnrS family protein; KEGG: rpc:RPC_1235 NnrS; heme-Cu protein NnrS 1453178..1454398 Rhodopseudomonas palustris BisA53 4358671 YP_780221.1 CDS RPE_1289 NC_008435.1 1454420 1454686 D KEGG: rpc:RPC_1236 hypothetical protein; hypothetical protein 1454420..1454686 Rhodopseudomonas palustris BisA53 4358672 YP_780222.1 CDS RPE_1290 NC_008435.1 1454673 1455311 R PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: rpd:RPD_3789 response regulator receiver; two component LuxR family transcriptional regulator complement(1454673..1455311) Rhodopseudomonas palustris BisA53 4358673 YP_780223.1 CDS RPE_1291 NC_008435.1 1455637 1455879 D hypothetical protein 1455637..1455879 Rhodopseudomonas palustris BisA53 4358674 YP_780224.1 CDS RPE_1292 NC_008435.1 1456156 1456299 D PFAM: antenna complex, alpha/beta subunit; KEGG: rpd:RPD_2610 antenna complex, alpha/beta subunit; antenna complex subunit alpha/beta 1456156..1456299 Rhodopseudomonas palustris BisA53 4358675 YP_780225.1 CDS RPE_1293 NC_008435.1 1456314 1456493 D PFAM: antenna complex, alpha/beta subunit; KEGG: rpb:RPB_4032 antenna complex, alpha/beta subunit; antenna complex subunit alpha/beta 1456314..1456493 Rhodopseudomonas palustris BisA53 4358676 YP_780226.1 CDS RPE_1294 NC_008435.1 1456688 1458136 D PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: rpc:RPC_1240 PucC protein; PUCC protein 1456688..1458136 Rhodopseudomonas palustris BisA53 4358677 YP_780227.1 CDS RPE_1295 NC_008435.1 1458133 1458780 D KEGG: rpc:RPC_1241 hypothetical protein; hypothetical protein 1458133..1458780 Rhodopseudomonas palustris BisA53 4359820 YP_780228.1 CDS RPE_1296 NC_008435.1 1458791 1459036 D KEGG: rpc:RPC_1242 hypothetical protein; hypothetical protein 1458791..1459036 Rhodopseudomonas palustris BisA53 4359821 YP_780229.1 CDS RPE_1297 NC_008435.1 1459168 1460670 D PFAM: FAD dependent oxidoreductase; KEGG: rpd:RPD_3782 putative monooxygenase; FAD dependent oxidoreductase 1459168..1460670 Rhodopseudomonas palustris BisA53 4359822 YP_780230.1 CDS RPE_1298 NC_008435.1 1460788 1461237 D KEGG: rpc:RPC_1243 hypothetical protein; hypothetical protein 1460788..1461237 Rhodopseudomonas palustris BisA53 4359823 YP_780231.1 CDS RPE_1299 NC_008435.1 1461309 1461767 R KEGG: rpc:RPC_1244 hypothetical protein; hypothetical protein complement(1461309..1461767) Rhodopseudomonas palustris BisA53 4359824 YP_780232.1 CDS RPE_1300 NC_008435.1 1461930 1463159 R PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: rpd:RPD_3777 coenzyme F420 hydrogenase/dehydrogenase beta subunit-like; coenzyme F420 hydrogenase/dehydrogenase subunit beta complement(1461930..1463159) Rhodopseudomonas palustris BisA53 4359825 YP_780233.1 CDS RPE_1301 NC_008435.1 1463153 1463650 R PFAM: protein of unknown function DUF427; KEGG: rpb:RPB_4022 protein of unknown function DUF427; hypothetical protein complement(1463153..1463650) Rhodopseudomonas palustris BisA53 4359826 YP_780234.1 CDS RPE_1302 NC_008435.1 1463702 1464208 R KEGG: rpc:RPC_1246 hypothetical protein; hypothetical protein complement(1463702..1464208) Rhodopseudomonas palustris BisA53 4359827 YP_780235.1 CDS RPE_1303 NC_008435.1 1464208 1465803 R KEGG: rpd:RPD_3774 hypothetical protein; hypothetical protein complement(1464208..1465803) Rhodopseudomonas palustris BisA53 4359828 YP_780236.1 CDS RPE_1304 NC_008435.1 1465834 1467153 R KEGG: rpb:RPB_4019 hypothetical protein; hypothetical protein complement(1465834..1467153) Rhodopseudomonas palustris BisA53 4359829 YP_780237.1 CDS RPE_1305 NC_008435.1 1467439 1468419 D KEGG: rpc:RPC_1249 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; porphobilinogen deaminase 1467439..1468419 Rhodopseudomonas palustris BisA53 4359830 YP_780238.1 CDS RPE_1306 NC_008435.1 1468463 1469485 D KEGG: rpc:RPC_1250 magnesium chelatase ATPase subunit I; TIGRFAM: magnesium chelatase ATPase subunit I; PFAM: magnesium chelatase, ChlI subunit; SMART: AAA ATPase; magnesium chelatase ATPase subunit I 1468463..1469485 Rhodopseudomonas palustris BisA53 4359831 YP_780239.1 CDS bchD NC_008435.1 1469482 1471257 D involved in chelation of magnesium into protoporphyrin IX; involved in bacteriochlorophyll biosynthesis; part of a complex with BchI, BchD, and BchH; magnesium chelatase subunit D 1469482..1471257 Rhodopseudomonas palustris BisA53 4359832 YP_780240.1 CDS RPE_1308 NC_008435.1 1471234 1472478 R KEGG: rpc:RPC_1252 transcriptional regulator, AraC family; TIGRFAM: PAS sensor protein; PFAM: helix-turn-helix- domain containing protein, AraC type; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; AraC family transcriptional regulator complement(1471234..1472478) Rhodopseudomonas palustris BisA53 4359833 YP_780241.1 CDS RPE_1309 NC_008435.1 1472634 1473869 R KEGG: rpc:RPC_1252 transcriptional regulator, AraC family; TIGRFAM: PAS sensor protein; PFAM: helix-turn-helix- domain containing protein, AraC type; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; AraC family transcriptional regulator complement(1472634..1473869) Rhodopseudomonas palustris BisA53 4359834 YP_780242.1 CDS RPE_1310 NC_008435.1 1474178 1475881 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: rpc:RPC_1253 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1474178..1475881 Rhodopseudomonas palustris BisA53 4359835 YP_780243.1 CDS RPE_1311 NC_008435.1 1476452 1478149 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: rpc:RPC_3380 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1476452..1478149 Rhodopseudomonas palustris BisA53 4359836 YP_780244.1 CDS hemE NC_008435.1 1478232 1479278 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(1478232..1479278) Rhodopseudomonas palustris BisA53 4359958 YP_780245.1 CDS RPE_1313 NC_008435.1 1479390 1480391 D KEGG: rpc:RPC_1259 hypothetical protein; hypothetical protein 1479390..1480391 Rhodopseudomonas palustris BisA53 4359959 YP_780246.1 CDS RPE_1314 NC_008435.1 1480404 1481294 D PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_1260 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1480404..1481294 Rhodopseudomonas palustris BisA53 4359960 YP_780247.1 CDS RPE_1315 NC_008435.1 1481374 1482927 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rpc:RPC_1261 amine oxidase; amine oxidase 1481374..1482927 Rhodopseudomonas palustris BisA53 4359961 YP_780248.1 CDS RPE_1316 NC_008435.1 1482924 1483976 D PFAM: Squalene/phytoene synthase; KEGG: rpc:RPC_1262 squalene/phytoene synthase; squalene/phytoene synthase 1482924..1483976 Rhodopseudomonas palustris BisA53 4359962 YP_780249.1 CDS RPE_1317 NC_008435.1 1484109 1485011 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 1484109..1485011 Rhodopseudomonas palustris BisA53 4359963 YP_780250.1 CDS RPE_1318 NC_008435.1 1485036 1485176 D KEGG: rpb:RPB_4008 hypothetical protein; hypothetical protein 1485036..1485176 Rhodopseudomonas palustris BisA53 4359964 YP_780251.1 CDS RPE_1319 NC_008435.1 1485222 1485371 D KEGG: rpc:RPC_1265 hypothetical protein; hypothetical protein 1485222..1485371 Rhodopseudomonas palustris BisA53 4359965 YP_780252.1 CDS RPE_1320 NC_008435.1 1485466 1486497 R PFAM: hydroxyneurosporene synthase; KEGG: rpc:RPC_1288 hydroxyneurosporene synthase; hydroxyneurosporene synthase complement(1485466..1486497) Rhodopseudomonas palustris BisA53 4359966 YP_780253.1 CDS RPE_1321 NC_008435.1 1486652 1487074 R KEGG: rpb:RPB_0709 integral membrane protein-like; integral membrane protein-like protein complement(1486652..1487074) Rhodopseudomonas palustris BisA53 4359967 YP_780254.1 CDS RPE_1322 NC_008435.1 1487543 1488193 D PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: jan:Jann_0393 NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase 1487543..1488193 Rhodopseudomonas palustris BisA53 4359968 YP_780255.1 CDS RPE_1323 NC_008435.1 1488305 1489849 R PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rpc:RPC_1289 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(1488305..1489849) Rhodopseudomonas palustris BisA53 4359969 YP_780256.1 CDS RPE_1324 NC_008435.1 1489929 1490795 D PFAM: Polyprenyl synthetase; KEGG: rpc:RPC_1290 polyprenyl synthetase; polyprenyl synthetase 1489929..1490795 Rhodopseudomonas palustris BisA53 4359970 YP_780257.1 CDS RPE_1325 NC_008435.1 1490833 1491978 D PFAM: O-methyltransferase, family 2; Methyltransferase type 12; KEGG: rpc:RPC_1291 O-methyltransferase, family 2; O-methyltransferase family protein 1490833..1491978 Rhodopseudomonas palustris BisA53 4359971 YP_780258.1 CDS RPE_1326 NC_008435.1 1492061 1492999 D TIGRFAM: chlorophyll synthesis pathway, BchC; PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: rpc:RPC_1292 chlorophyll synthesis pathway, BchC; chlorophyll synthesis pathway protein BchC 1492061..1492999 Rhodopseudomonas palustris BisA53 4359972 YP_780259.1 CDS RPE_1327 NC_008435.1 1492999 1493994 D KEGG: rpc:RPC_1293 chlorophyllide reductase iron protein subunit X; TIGRFAM: chlorophyllide reductase iron protein subunit X; PFAM: NifH/frxC-family protein; chlorophyllide reductase iron protein subunit X 1492999..1493994 Rhodopseudomonas palustris BisA53 4359973 YP_780260.1 CDS RPE_1328 NC_008435.1 1494020 1495609 D TIGRFAM: chlorophyllide reductase subunit Y; PFAM: oxidoreductase/nitrogenase, component 1; KEGG: rpc:RPC_1294 chlorophyllide reductase subunit Y; chlorophyllide reductase subunit Y 1494020..1495609 Rhodopseudomonas palustris BisA53 4359974 YP_780261.1 CDS RPE_1329 NC_008435.1 1495609 1497057 D TIGRFAM: chlorophyllide reductase subunit Z; PFAM: oxidoreductase/nitrogenase, component 1; protein of unknown function DUF1197; KEGG: rpc:RPC_1295 chlorophyllide reductase subunit Z; chlorophyllide reductase subunit Z 1495609..1497057 Rhodopseudomonas palustris BisA53 4359975 YP_780262.1 CDS RPE_1330 NC_008435.1 1497135 1497362 D KEGG: rpc:RPC_1296 hypothetical protein; hypothetical protein 1497135..1497362 Rhodopseudomonas palustris BisA53 4358833 YP_780263.1 CDS RPE_1331 NC_008435.1 1497505 1497717 D PFAM: antenna complex, alpha/beta subunit; KEGG: rpc:RPC_1297 antenna complex, alpha/beta subunit; antenna complex subunit alpha/beta 1497505..1497717 Rhodopseudomonas palustris BisA53 4358834 YP_780264.1 CDS RPE_1332 NC_008435.1 1497733 1497903 D PFAM: antenna complex, alpha/beta subunit; KEGG: rpc:RPC_1298 antenna complex, alpha/beta subunit; antenna complex subunit alpha/beta 1497733..1497903 Rhodopseudomonas palustris BisA53 4358835 YP_780265.1 CDS RPE_1333 NC_008435.1 1498035 1498868 D TIGRFAM: photosynthetic reaction center L subunit; PFAM: photosynthetic reaction centre protein; KEGG: rpc:RPC_1299 photosynthetic reaction center L subunit; photosynthetic reaction center subunit L 1498035..1498868 Rhodopseudomonas palustris BisA53 4358836 YP_780266.1 CDS RPE_1334 NC_008435.1 1498899 1499819 D TIGRFAM: photosynthetic reaction center, M subunit; PFAM: photosynthetic reaction centre protein; KEGG: rpc:RPC_1300 photosynthetic reaction center M subunit; photosynthetic reaction center subunit M 1498899..1499819 Rhodopseudomonas palustris BisA53 4358837 YP_780267.1 CDS RPE_1335 NC_008435.1 1500006 1501439 D KEGG: rpc:RPC_1301 putative PAS/PAC sensor protein; TIGRFAM: transcriptional regulator PpsR; PFAM: helix-turn-helix, Fis-type; SMART: PAS domain containing protein; putative PAS/PAC sensor protein 1500006..1501439 Rhodopseudomonas palustris BisA53 4358838 YP_780268.1 CDS RPE_1336 NC_008435.1 1501432 1502325 D TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; KEGG: rpb:RPB_3992 bacteriochlorophyll/chlorophyll synthetase; bacteriochlorophyll/chlorophyll a synthase 1501432..1502325 Rhodopseudomonas palustris BisA53 4358839 YP_780269.1 CDS RPE_1337 NC_008435.1 1502325 1503674 D PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: rpc:RPC_1303 PucC protein; PUCC protein 1502325..1503674 Rhodopseudomonas palustris BisA53 4358840 YP_780270.1 CDS RPE_1338 NC_008435.1 1503671 1504876 D TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: rpb:RPB_3990 geranylgeranyl reductase; geranylgeranyl reductase 1503671..1504876 Rhodopseudomonas palustris BisA53 4358841 YP_780271.1 CDS RPE_1339 NC_008435.1 1504876 1505364 D PFAM: TspO/MBR family protein; KEGG: rpc:RPC_1305 TspO and MBR like proteins; TspO and MBR like proteins 1504876..1505364 Rhodopseudomonas palustris BisA53 4358842 YP_780272.1 CDS RPE_1340 NC_008435.1 1505410 1505676 D KEGG: rpc:RPC_1306 hypothetical protein; hypothetical protein 1505410..1505676 Rhodopseudomonas palustris BisA53 4358843 YP_780273.1 CDS RPE_1341 NC_008435.1 1505712 1506149 R PFAM: cytochrome c, class I; KEGG: rpc:RPC_1307 cytochrome c, class I; cytochrome c, class I complement(1505712..1506149) Rhodopseudomonas palustris BisA53 4358844 YP_780274.1 CDS RPE_1342 NC_008435.1 1506352 1507812 D KEGG: rpc:RPC_1308 putative PAS/PAC sensor protein; TIGRFAM: transcriptional regulator PpsR; PFAM: helix-turn-helix, Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; putative PAS/PAC sensor protein 1506352..1507812 Rhodopseudomonas palustris BisA53 4358845 YP_780275.1 CDS RPE_1343 NC_008435.1 1507814 1509994 D TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; Phytochrome, central region domain protein; PAS fold-2 domain protein; PAS fold domain protein; KEGG: rpc:RPC_1309 putative PAS/PAC sensor protein; putative PAS/PAC sensor protein 1507814..1509994 Rhodopseudomonas palustris BisA53 4358846 YP_780276.1 CDS RPE_1344 NC_008435.1 1510013 1510702 R PFAM: Haem oxygenase; KEGG: rpc:RPC_1310 heme oxygenase (decyclizing); heme oxygenase complement(1510013..1510702) Rhodopseudomonas palustris BisA53 4358847 YP_780277.1 CDS RPE_1345 NC_008435.1 1510751 1511635 R KEGG: rpc:RPC_1311 cobalamin B12-binding; cobalamin B12-binding protein complement(1510751..1511635) Rhodopseudomonas palustris BisA53 4358848 YP_780278.1 CDS RPE_1346 NC_008435.1 1511944 1512471 D PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: rpc:RPC_1312 2-vinyl bacteriochlorophyllide hydratase; 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin oxidoreductase subunit CD 1511944..1512471 Rhodopseudomonas palustris BisA53 4358849 YP_780279.1 CDS RPE_1347 NC_008435.1 1512468 1513751 D light-independent reduction of protochlorophyllide to form chlorophyllide a; light-independent protochlorophyllide reductase subunit N 1512468..1513751 Rhodopseudomonas palustris BisA53 4359001 YP_780280.1 CDS RPE_1348 NC_008435.1 1513753 1515348 D light-independent reduction of protochlorophyllide to form chlorophyllide a; light-independent protochlorophyllide reductase subunit B 1513753..1515348 Rhodopseudomonas palustris BisA53 4359002 YP_780281.1 CDS bchH NC_008435.1 1515323 1519069 D involved in chelation of magnesium into protoporphyrin IX; involved in bacteriochlorophyll biosynthesis; the enzyme from Rhodobacter capsulatus contains an Fe-S cluster; part of a complex with BchI, BchD, and BchH; magnesium chelatase subunit H 1515323..1519069 Rhodopseudomonas palustris BisA53 4359003 YP_780282.1 CDS chlL NC_008435.1 1519066 1519998 D light-independent; with chlN(bchN) and chlB(bchB) reduces ring D of protochlorophyllide to form chlorophyllide a in chlorophyll/bacteriochlorophyll production; protochlorophyllide reductase iron-sulfur ATP-binding protein 1519066..1519998 Rhodopseudomonas palustris BisA53 4359004 YP_780283.1 CDS RPE_1351 NC_008435.1 1519998 1520699 D catalyzes the formation of Mg-protoporphyrin IX methyl ester and S-adenosyl-L-homocysteine from Mg-protoporphyrin IX and S-adenosyl-L-methionine; Mg-protoporphyrin IX methyl transferase 1519998..1520699 Rhodopseudomonas palustris BisA53 4359005 YP_780284.1 CDS RPE_1352 NC_008435.1 1520696 1522129 D PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: rpc:RPC_1318 PucC protein; PUCC protein 1520696..1522129 Rhodopseudomonas palustris BisA53 4359006 YP_780285.1 CDS RPE_1353 NC_008435.1 1522151 1522918 D PFAM: photosynthetic reaction centre, H-chain; PRC-barrel domain protein; KEGG: rpc:RPC_1319 photosynthetic reaction centre, H-chain; photosynthetic reaction center subunit H 1522151..1522918 Rhodopseudomonas palustris BisA53 4359007 YP_780286.1 CDS RPE_1354 NC_008435.1 1522915 1523577 D KEGG: rpc:RPC_1320 putative photosynthetic complex assembly protein; putative photosynthetic complex assembly protein 1522915..1523577 Rhodopseudomonas palustris BisA53 4359008 YP_780287.1 CDS RPE_1355 NC_008435.1 1523591 1524058 D KEGG: rpc:RPC_1321 putative photosynthetic complex assembly protein; putative photosynthetic complex assembly protein 1523591..1524058 Rhodopseudomonas palustris BisA53 4359009 YP_780288.1 CDS RPE_1356 NC_008435.1 1524055 1524351 D KEGG: rpc:RPC_1322 hypothetical protein; hypothetical protein 1524055..1524351 Rhodopseudomonas palustris BisA53 4359010 YP_780289.1 CDS RPE_1357 NC_008435.1 1524360 1525454 D oxidative; catalyzes the formation of divinylprotochlorophyllide from magnesium-protoporphyrin IX 13-monomethyl ester in isocyclic ring formation in chlorophyll biosynthesis; magnesium-protoporphyrin IX monomethyl ester cyclase 1524360..1525454 Rhodopseudomonas palustris BisA53 4359011 YP_780290.1 CDS RPE_1358 NC_008435.1 1525468 1526541 D KEGG: rpc:RPC_1324 hypothetical protein; hypothetical protein 1525468..1526541 Rhodopseudomonas palustris BisA53 4359012 YP_780291.1 CDS RPE_1359 NC_008435.1 1526538 1527749 D catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase 1526538..1527749 Rhodopseudomonas palustris BisA53 4359013 YP_780292.1 CDS RPE_1360 NC_008435.1 1527802 1528770 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_1326 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1527802..1528770) Rhodopseudomonas palustris BisA53 4359014 YP_780293.1 CDS rbcL NC_008435.1 1528934 1530391 D type III RuBisCO; involved in carbon fixation; ribulose bisophosphate carboxylase 1528934..1530391 Rhodopseudomonas palustris BisA53 4359015 YP_780294.1 CDS RPE_1362 NC_008435.1 1530403 1530828 D PFAM: ribulose bisphosphate carboxylase, small chain; KEGG: rpc:RPC_1328 ribulose-bisphosphate carboxylase; ribulose-bisphosphate carboxylase form I small subunit 1530403..1530828 Rhodopseudomonas palustris BisA53 4359016 YP_780295.1 CDS RPE_1363 NC_008435.1 1530825 1531745 D PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: rpc:RPC_1329 AAA ATPase, central region; ATPase central domain-containing protein 1530825..1531745 Rhodopseudomonas palustris BisA53 4359017 YP_780296.1 CDS RPE_1364 NC_008435.1 1532508 1533290 R PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_1330 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(1532508..1533290) Rhodopseudomonas palustris BisA53 4359018 YP_780297.1 CDS RPE_1365 NC_008435.1 1533294 1534589 R catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase complement(1533294..1534589) Rhodopseudomonas palustris BisA53 4358557 YP_780298.1 CDS RPE_1366 NC_008435.1 1534638 1536905 R PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: rpc:RPC_1332 oligopeptidase B; oligopeptidase B complement(1534638..1536905) Rhodopseudomonas palustris BisA53 4358558 YP_780299.1 CDS RPE_1367 NC_008435.1 1537233 1537454 R PFAM: SlyX family protein; KEGG: rpc:RPC_1351 SlyX; SlyX family protein complement(1537233..1537454) Rhodopseudomonas palustris BisA53 4358559 YP_780300.1 CDS RPE_1368 NC_008435.1 1537619 1539205 D KEGG: rpc:RPC_1352 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 1537619..1539205 Rhodopseudomonas palustris BisA53 4358560 YP_780301.1 CDS RPE_1369 NC_008435.1 1539393 1539611 R PFAM: CsbD family protein; KEGG: rpc:RPC_1353 CsbD-like; CsbD-like protein complement(1539393..1539611) Rhodopseudomonas palustris BisA53 4358561 YP_780302.1 CDS RPE_1370 NC_008435.1 1540128 1542764 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; KEGG: rpc:RPC_1355 multi-sensor hybrid histidine kinase; multi-sensor hybrid histidine kinase 1540128..1542764 Rhodopseudomonas palustris BisA53 4358562 YP_780303.1 CDS RPE_1371 NC_008435.1 1542866 1543297 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:blr2408 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 1542866..1543297 Rhodopseudomonas palustris BisA53 4358563 YP_780304.1 CDS RPE_1372 NC_008435.1 1543317 1543799 D PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: bja:blr2409 hypothetical protein; 3-demethylubiquinone-9 3-methyltransferase 1543317..1543799 Rhodopseudomonas palustris BisA53 4358564 YP_780305.1 CDS RPE_1373 NC_008435.1 1543900 1545003 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rpc:RPC_1356 secretion protein HlyD; RND family efflux transporter MFP subunit 1543900..1545003 Rhodopseudomonas palustris BisA53 4358565 YP_780306.1 CDS RPE_1374 NC_008435.1 1545019 1548156 D PFAM: acriflavin resistance protein; KEGG: rpd:RPD_4073 acriflavin resistance protein; acriflavin resistance protein 1545019..1548156 Rhodopseudomonas palustris BisA53 4358566 YP_780307.1 CDS RPE_1375 NC_008435.1 1548174 1548785 D PFAM: regulatory protein, TetR; KEGG: rpc:RPC_1358 transcriptional regulator, TetR family; TetR family transcriptional regulator 1548174..1548785 Rhodopseudomonas palustris BisA53 4358567 YP_780308.1 CDS RPE_1376 NC_008435.1 1548931 1549560 D KEGG: rpc:RPC_1359 hypothetical protein; hypothetical protein 1548931..1549560 Rhodopseudomonas palustris BisA53 4358568 YP_780309.1 CDS RPE_1377 NC_008435.1 1549683 1550507 D PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: rpc:RPC_1360 transcriptional regulator, DeoR family; DeoR family transcriptional regulator 1549683..1550507 Rhodopseudomonas palustris BisA53 4358569 YP_780310.1 CDS glpD NC_008435.1 1550650 1552194 D in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 1550650..1552194 Rhodopseudomonas palustris BisA53 4358570 YP_780311.1 CDS RPE_1379 NC_008435.1 1552191 1553270 D PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rpc:RPC_1362 ABC transporter related; ABC transporter-like protein 1552191..1553270 Rhodopseudomonas palustris BisA53 4358571 YP_780312.1 CDS RPE_1380 NC_008435.1 1553283 1554386 D PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rpd:RPD_4067 ABC transporter related; ABC transporter-like protein 1553283..1554386 Rhodopseudomonas palustris BisA53 4358572 YP_780313.1 CDS RPE_1381 NC_008435.1 1554386 1555288 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_4214 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1554386..1555288 Rhodopseudomonas palustris BisA53 4358573 YP_780314.1 CDS RPE_1382 NC_008435.1 1555288 1556094 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_1365 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1555288..1556094 Rhodopseudomonas palustris BisA53 4358469 YP_780315.1 CDS RPE_1383 NC_008435.1 1556874 1557203 D KEGG: rpc:RPC_1366 hypothetical protein; hypothetical protein 1556874..1557203 Rhodopseudomonas palustris BisA53 4358470 YP_780316.1 CDS RPE_1384 NC_008435.1 1557268 1559064 D PFAM: extracellular solute-binding protein, family 1; KEGG: rpd:RPD_4063 extracellular solute-binding protein, family 1; extracellular solute-binding protein 1557268..1559064 Rhodopseudomonas palustris BisA53 4358471 YP_780317.1 CDS RPE_1385 NC_008435.1 1559505 1560605 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rpc:RPC_1368 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase complement(1559505..1560605) Rhodopseudomonas palustris BisA53 4358472 YP_780318.1 CDS RPE_1386 NC_008435.1 1560786 1561847 R PFAM: inner-membrane translocator; KEGG: rpc:RPC_1370 inner-membrane translocator; inner-membrane translocator complement(1560786..1561847) Rhodopseudomonas palustris BisA53 4358473 YP_780319.1 CDS RPE_1387 NC_008435.1 1561858 1562895 R PFAM: inner-membrane translocator; KEGG: rpc:RPC_1371 inner-membrane translocator; inner-membrane translocator complement(1561858..1562895) Rhodopseudomonas palustris BisA53 4358474 YP_780320.1 CDS RPE_1388 NC_008435.1 1562999 1563721 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_1372 ABC transporter related; ABC transporter-like protein complement(1562999..1563721) Rhodopseudomonas palustris BisA53 4358475 YP_780321.1 CDS RPE_1389 NC_008435.1 1563718 1564482 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_1373 ABC transporter related; ABC transporter-like protein complement(1563718..1564482) Rhodopseudomonas palustris BisA53 4358476 YP_780322.1 CDS RPE_1390 NC_008435.1 1564659 1565837 R PFAM: Extracellular ligand-binding receptor; KEGG: rpc:RPC_1374 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(1564659..1565837) Rhodopseudomonas palustris BisA53 4358477 YP_780323.1 CDS RPE_1391 NC_008435.1 1565920 1567269 R TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rpb:RPB_4203 lytic murein transglycosylase; lytic murein transglycosylase complement(1565920..1567269) Rhodopseudomonas palustris BisA53 4358478 YP_780324.1 CDS RPE_1392 NC_008435.1 1567266 1567538 R TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: rpc:RPC_1376 addiction module toxin, RelE/StbE; addiction module antitoxin complement(1567266..1567538) Rhodopseudomonas palustris BisA53 4358479 YP_780325.1 CDS RPE_1393 NC_008435.1 1567548 1567901 R TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: rpc:RPC_1377 RelB antitoxin; addiction module antitoxin complement(1567548..1567901) Rhodopseudomonas palustris BisA53 4358480 YP_780326.1 CDS RPE_1394 NC_008435.1 1567940 1569382 R PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: rpc:RPC_1378 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(1567940..1569382) Rhodopseudomonas palustris BisA53 4358481 YP_780327.1 CDS RPE_1395 NC_008435.1 1569592 1571226 D Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 1569592..1571226 Rhodopseudomonas palustris BisA53 4358482 YP_780328.1 CDS RPE_1396 NC_008435.1 1571248 1571463 D KEGG: rpa:RPA4393 hypothetical protein; hypothetical protein 1571248..1571463 Rhodopseudomonas palustris BisA53 4358483 YP_780329.1 CDS RPE_1397 NC_008435.1 1571696 1572241 D KEGG: nha:Nham_1099 hypothetical protein; hypothetical protein 1571696..1572241 Rhodopseudomonas palustris BisA53 4358484 YP_780330.1 CDS RPE_1398 NC_008435.1 1572242 1573141 R PFAM: metallophosphoesterase; KEGG: rpc:RPC_1382 metallophosphoesterase; metallophosphoesterase complement(1572242..1573141) Rhodopseudomonas palustris BisA53 4358485 YP_780331.1 CDS RPE_1399 NC_008435.1 1573285 1573779 D PFAM: NUDIX hydrolase; KEGG: rpb:RPB_4195 NUDIX hydrolase; NUDIX hydrolase 1573285..1573779 Rhodopseudomonas palustris BisA53 4358486 YP_780332.1 CDS RPE_1400 NC_008435.1 1574025 1575764 D PFAM: MscS Mechanosensitive ion channel; KEGG: rpb:RPB_4194 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS 1574025..1575764 Rhodopseudomonas palustris BisA53 4360166 YP_780333.1 CDS RPE_1401 NC_008435.1 1575886 1576434 D PFAM: GCN5-related N-acetyltransferase; KEGG: nha:Nham_3258 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1575886..1576434 Rhodopseudomonas palustris BisA53 4360167 YP_780334.1 CDS RPE_1402 NC_008435.1 1576602 1577123 R PFAM: GCN5-related N-acetyltransferase; KEGG: eba:p1B136 putative histone acetyltransferase-related protein; N-acetyltransferase GCN5 complement(1576602..1577123) Rhodopseudomonas palustris BisA53 4360168 YP_780335.1 CDS RPE_1403 NC_008435.1 1577120 1577407 R KEGG: rpc:RPC_2943 hypothetical protein; hypothetical protein complement(1577120..1577407) Rhodopseudomonas palustris BisA53 4360169 YP_780336.1 CDS RPE_1404 NC_008435.1 1577885 1580224 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpd:RPD_4046 TonB-dependent receptor; TonB-dependent receptor complement(1577885..1580224) Rhodopseudomonas palustris BisA53 4360170 YP_780337.1 CDS RPE_1405 NC_008435.1 1580354 1580734 R KEGG: rpc:RPC_1404 hypothetical protein; hypothetical protein complement(1580354..1580734) Rhodopseudomonas palustris BisA53 4360171 YP_780338.1 CDS RPE_1406 NC_008435.1 1580966 1581502 R KEGG: rpc:RPC_1403 hypothetical protein; hypothetical protein complement(1580966..1581502) Rhodopseudomonas palustris BisA53 4360172 YP_780339.1 CDS RPE_1407 NC_008435.1 1581531 1581833 R KEGG: rpa:RPA4382 hypothetical protein; hypothetical protein complement(1581531..1581833) Rhodopseudomonas palustris BisA53 4360173 YP_780340.1 CDS RPE_1408 NC_008435.1 1582009 1582473 D KEGG: rpc:RPC_1401 hypothetical protein; hypothetical protein 1582009..1582473 Rhodopseudomonas palustris BisA53 4360174 YP_780341.1 CDS RPE_1409 NC_008435.1 1582561 1583241 D PFAM: ribonuclease T2; KEGG: rpc:RPC_1400 ribonuclease T2; ribonuclease T2 1582561..1583241 Rhodopseudomonas palustris BisA53 4360175 YP_780342.1 CDS RPE_1410 NC_008435.1 1583403 1584386 D TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: rpc:RPC_1399 riboflavin biosynthesis protein RibF; riboflavin biosynthesis protein RibF 1583403..1584386 Rhodopseudomonas palustris BisA53 4360176 YP_780343.1 CDS RPE_1411 NC_008435.1 1584407 1584943 D PFAM: transferase hexapeptide repeat containing protein; KEGG: rpc:RPC_1398 transferase hexapeptide repeat; hexapaptide repeat-containing transferase 1584407..1584943 Rhodopseudomonas palustris BisA53 4360177 YP_780344.1 CDS RPE_1412 NC_008435.1 1584953 1585399 R KEGG: rpb:RPB_4184 hypothetical protein; hypothetical protein complement(1584953..1585399) Rhodopseudomonas palustris BisA53 4360178 YP_780345.1 CDS RPE_1413 NC_008435.1 1585406 1585816 R TIGRFAM: conserved hypothetical protein; KEGG: rpb:RPB_4183 hypothetical protein; hypothetical protein complement(1585406..1585816) Rhodopseudomonas palustris BisA53 4360179 YP_780346.1 CDS ileS NC_008435.1 1585972 1589148 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1585972..1589148 Rhodopseudomonas palustris BisA53 4360180 YP_780347.1 CDS RPE_1415 NC_008435.1 1589215 1589814 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1589215..1589814 Rhodopseudomonas palustris BisA53 4360181 YP_780348.1 CDS RPE_1416 NC_008435.1 1589893 1590630 D KEGG: rpc:RPC_1393 hypothetical protein; hypothetical protein 1589893..1590630 Rhodopseudomonas palustris BisA53 4360182 YP_780349.1 CDS RPE_1417 NC_008435.1 1590660 1592069 D PFAM: peptidase M16 domain protein; KEGG: rpc:RPC_1392 peptidase M16-like; peptidase M16 domain-containing protein 1590660..1592069 Rhodopseudomonas palustris BisA53 4357809 YP_780350.1 CDS RPE_1418 NC_008435.1 1592066 1593442 D PFAM: peptidase M16 domain protein; KEGG: rpc:RPC_1391 peptidase M16-like; peptidase M16 domain-containing protein 1592066..1593442 Rhodopseudomonas palustris BisA53 4357810 YP_780351.1 CDS RPE_1419 NC_008435.1 1593768 1594193 D PFAM: Class I peptide chain release factor; KEGG: bja:blr7486 hypothetical protein; peptidyl-tRNA hydrolase domain-containing protein 1593768..1594193 Rhodopseudomonas palustris BisA53 4357811 YP_780352.1 CDS mutL NC_008435.1 1594417 1596228 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1594417..1596228 Rhodopseudomonas palustris BisA53 4357812 YP_780353.1 CDS RPE_1421 NC_008435.1 1596408 1596671 D KEGG: ava:Ava_B0335 predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain; CopG/Arc/MetJ family transcriptional regulator 1596408..1596671 Rhodopseudomonas palustris BisA53 4357813 YP_780354.1 CDS RPE_1423 NC_008435.1 1597180 1598292 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(1597180..1598292) Rhodopseudomonas palustris BisA53 4357815 YP_780355.1 CDS RPE_1424 NC_008435.1 1598571 1599119 D PFAM: regulatory protein, MarR; KEGG: rpc:RPC_1387 transcriptional regulator, MarR family; MarR family transcriptional regulator 1598571..1599119 Rhodopseudomonas palustris BisA53 4357816 YP_780356.1 CDS RPE_1425 NC_008435.1 1599116 1599838 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_1386 two component transcriptional regulator, winged helix family; two component transcriptional regulator 1599116..1599838 Rhodopseudomonas palustris BisA53 4357817 YP_780357.1 CDS RPE_1426 NC_008435.1 1600130 1601518 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_1385 periplasmic sensor signal transduction histidine kinase; sensor signal transduction histidine kinase 1600130..1601518 Rhodopseudomonas palustris BisA53 4357818 YP_780358.1 CDS RPE_1427 NC_008435.1 1601712 1602578 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(1601712..1602578) Rhodopseudomonas palustris BisA53 4357819 YP_780359.1 CDS RPE_1428 NC_008435.1 1602664 1603164 R KEGG: rpc:RPC_1407 hypothetical protein; hypothetical protein complement(1602664..1603164) Rhodopseudomonas palustris BisA53 4357820 YP_780360.1 CDS RPE_1429 NC_008435.1 1603589 1604104 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; riboflavin synthase subunit beta 1603589..1604104 Rhodopseudomonas palustris BisA53 4357821 YP_780361.1 CDS RPE_1430 NC_008435.1 1604491 1605444 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(1604491..1605444) Rhodopseudomonas palustris BisA53 4357822 YP_780362.1 CDS RPE_1431 NC_008435.1 1605619 1606236 R KEGG: rpc:RPC_1410 hypothetical protein; hypothetical protein complement(1605619..1606236) Rhodopseudomonas palustris BisA53 4357823 YP_780363.1 CDS RPE_1432 NC_008435.1 1606409 1607176 R PFAM: protein of unknown function DUF152; KEGG: rpa:RPA4360 DUF152; hypothetical protein complement(1606409..1607176) Rhodopseudomonas palustris BisA53 4357824 YP_780364.1 CDS RPE_1433 NC_008435.1 1607173 1608291 R PFAM: protein of unknown function DUF185; KEGG: rpc:RPC_1412 protein of unknown function DUF185; hypothetical protein complement(1607173..1608291) Rhodopseudomonas palustris BisA53 4357825 YP_780365.1 CDS RPE_1434 NC_008435.1 1608311 1609156 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(1608311..1609156) Rhodopseudomonas palustris BisA53 4357826 YP_780366.1 CDS RPE_1435 NC_008435.1 1609418 1609699 D PFAM: protein of unknown function DUF526; KEGG: rpc:RPC_1414 protein of unknown function DUF526; hypothetical protein 1609418..1609699 Rhodopseudomonas palustris BisA53 4358591 YP_780367.1 CDS RPE_1437 NC_008435.1 1611252 1611956 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 1611252..1611956 Rhodopseudomonas palustris BisA53 4358593 YP_780368.1 CDS RPE_1438 NC_008435.1 1611978 1612583 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1611978..1612583 Rhodopseudomonas palustris BisA53 4358594 YP_780369.1 CDS RPE_1439 NC_008435.1 1612672 1613835 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1612672..1613835 Rhodopseudomonas palustris BisA53 4358595 YP_780370.1 CDS RPE_1440 NC_008435.1 1614010 1614303 R KEGG: rpb:RPB_4158 hypothetical protein; hypothetical protein complement(1614010..1614303) Rhodopseudomonas palustris BisA53 4358596 YP_780371.1 CDS RPE_1441 NC_008435.1 1614414 1614869 D PFAM: MaoC domain protein dehydratase; KEGG: rpc:RPC_1419 MaoC-like dehydratase; dehydratase 1614414..1614869 Rhodopseudomonas palustris BisA53 4358597 YP_780372.1 CDS RPE_1442 NC_008435.1 1614879 1615361 D PFAM: MaoC domain protein dehydratase; KEGG: rpc:RPC_1420 MaoC-like dehydratase; dehydratase 1614879..1615361 Rhodopseudomonas palustris BisA53 4358598 YP_780373.1 CDS RPE_1443 NC_008435.1 1615503 1615661 D KEGG: rpc:RPC_1421 hypothetical protein; hypothetical protein 1615503..1615661 Rhodopseudomonas palustris BisA53 4358599 YP_780374.1 CDS RPE_1444 NC_008435.1 1615769 1616200 R KEGG: rpc:RPC_1422 hypothetical protein; hypothetical protein complement(1615769..1616200) Rhodopseudomonas palustris BisA53 4358600 YP_780375.1 CDS RPE_1445 NC_008435.1 1616377 1616634 R KEGG: rpc:RPC_1424 hypothetical protein; hypothetical protein complement(1616377..1616634) Rhodopseudomonas palustris BisA53 4358601 YP_780376.1 CDS RPE_1446 NC_008435.1 1616732 1617433 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rpa:RPA3992 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase complement(1616732..1617433) Rhodopseudomonas palustris BisA53 4358602 YP_780377.1 CDS RPE_1447 NC_008435.1 1617505 1619307 R PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_1426 ABC transporter related; ABC transporter-like protein complement(1617505..1619307) Rhodopseudomonas palustris BisA53 4358603 YP_780378.1 CDS RPE_1448 NC_008435.1 1619486 1620499 R TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rpc:RPC_1427 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase complement(1619486..1620499) Rhodopseudomonas palustris BisA53 4358604 YP_780379.1 CDS RPE_1449 NC_008435.1 1620734 1621678 D TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase, family 9; KEGG: rpc:RPC_1428 lipopolysaccharide heptosyltransferase I; lipopolysaccharide heptosyltransferase I 1620734..1621678 Rhodopseudomonas palustris BisA53 4358605 YP_780380.1 CDS RPE_1450 NC_008435.1 1621675 1622208 R TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: rpc:RPC_1429 HAD-superfamily hydrolase subfamily IIIA; histidinol-phosphate phosphatase family protein complement(1621675..1622208) Rhodopseudomonas palustris BisA53 4358606 YP_780381.1 CDS RPE_1451 NC_008435.1 1622205 1623290 R TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase, family 9; KEGG: rpc:RPC_1430 lipopolysaccharide heptosyltransferase II; lipopolysaccharide heptosyltransferase II complement(1622205..1623290) Rhodopseudomonas palustris BisA53 4358607 YP_780382.1 CDS RPE_1452 NC_008435.1 1623466 1624446 D TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rpb:RPB_1602 ADP-L-glycero-D-manno-heptose-6-epimerase; ADP-L-glycero-D-manno-heptose-6-epimerase 1623466..1624446 Rhodopseudomonas palustris BisA53 4359243 YP_780383.1 CDS RPE_1453 NC_008435.1 1624458 1625930 D TIGRFAM: cytidyltransferase-related domain; rfaE bifunctional protein; PFAM: cytidylyltransferase; PfkB domain protein; KEGG: rpc:RPC_1432 RfaE bifunctional protein, domain I; rfaE bifunctional protein 1624458..1625930 Rhodopseudomonas palustris BisA53 4359244 YP_780384.1 CDS RPE_1454 NC_008435.1 1625927 1626910 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rpc:RPC_1433 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1625927..1626910 Rhodopseudomonas palustris BisA53 4359245 YP_780385.1 CDS RPE_1455 NC_008435.1 1627096 1628100 D PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: rpc:RPC_1434 oxidoreductase-like; oxidoreductase domain-containing protein 1627096..1628100 Rhodopseudomonas palustris BisA53 4359246 YP_780386.1 CDS RPE_1456 NC_008435.1 1628197 1629345 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: rpd:RPD_1620 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 1628197..1629345 Rhodopseudomonas palustris BisA53 4359247 YP_780387.1 CDS RPE_1457 NC_008435.1 1629539 1631068 D TIGRFAM: integral membrane protein MviN; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: rpc:RPC_1436 integral membrane protein MviN; integral membrane protein MviN 1629539..1631068 Rhodopseudomonas palustris BisA53 4359248 YP_780388.1 CDS RPE_1458 NC_008435.1 1631065 1632957 R PFAM: Carbamoyltransferase; KEGG: rpc:RPC_1437 carbamoyltransferase; carbamoyltransferase complement(1631065..1632957) Rhodopseudomonas palustris BisA53 4359249 YP_780389.1 CDS RPE_1459 NC_008435.1 1633229 1633615 D KEGG: rpc:RPC_1438 hypothetical protein; hypothetical protein 1633229..1633615 Rhodopseudomonas palustris BisA53 4359250 YP_780390.1 CDS RPE_1460 NC_008435.1 1633798 1636101 D PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rpc:RPC_1439 carbon-monoxide dehydrogenase; carbon-monoxide dehydrogenase 1633798..1636101 Rhodopseudomonas palustris BisA53 4359251 YP_780391.1 CDS RPE_1461 NC_008435.1 1636299 1636748 D PFAM: cytochrome c, class II; KEGG: rpc:RPC_1440 cytochrome c, class II; cytochrome c, class II 1636299..1636748 Rhodopseudomonas palustris BisA53 4359252 YP_780392.1 CDS RPE_1462 NC_008435.1 1636785 1637882 D KEGG: rpc:RPC_1441 putative diheme cytochrome c-553; putative diheme cytochrome c-553 1636785..1637882 Rhodopseudomonas palustris BisA53 4359253 YP_780393.1 CDS RPE_1463 NC_008435.1 1638263 1639072 D KEGG: rpc:RPC_1443 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 1638263..1639072 Rhodopseudomonas palustris BisA53 4359254 YP_780394.1 CDS RPE_1464 NC_008435.1 1639228 1639884 D PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_1444 phosphatidylethanolamine N-methyltransferase; phosphatidylethanolamine N-methyltransferase 1639228..1639884 Rhodopseudomonas palustris BisA53 4359255 YP_780395.1 CDS RPE_1465 NC_008435.1 1639939 1640736 D PFAM: metallophosphoesterase; KEGG: rpc:RPC_1445 metallophosphoesterase; metallophosphoesterase 1639939..1640736 Rhodopseudomonas palustris BisA53 4359256 YP_780396.1 CDS RPE_1466 NC_008435.1 1640738 1641793 D PFAM: glycosyl transferase, group 1; KEGG: rpc:RPC_1446 glycosyl transferase, group 1; group 1 glycosyl transferase 1640738..1641793 Rhodopseudomonas palustris BisA53 4359257 YP_780397.1 CDS RPE_1467 NC_008435.1 1641860 1642897 D PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: rpc:RPC_1447 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent enzyme subunit beta 1641860..1642897 Rhodopseudomonas palustris BisA53 4359258 YP_780398.1 CDS RPE_1468 NC_008435.1 1642867 1644231 R KEGG: rpc:RPC_1449 hypothetical protein; hypothetical protein complement(1642867..1644231) Rhodopseudomonas palustris BisA53 4359259 YP_780399.1 CDS RPE_1469 NC_008435.1 1644308 1645498 D PFAM: nucleoside:H+ symporter; major facilitator superfamily MFS_1; KEGG: rpc:RPC_1450 major facilitator superfamily MFS_1; major facilitator transporter 1644308..1645498 Rhodopseudomonas palustris BisA53 4359260 YP_780400.1 CDS RPE_1470 NC_008435.1 1645505 1646515 R PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: rpc:RPC_1451 mandelate racemase/muconate lactonizing enzyme; mandelate racemase/muconate lactonizing protein complement(1645505..1646515) Rhodopseudomonas palustris BisA53 4359175 YP_780401.1 CDS RPE_1471 NC_008435.1 1646683 1647816 D PFAM: protein of unknown function DUF140; KEGG: rpc:RPC_1452 protein of unknown function DUF140; hypothetical protein 1646683..1647816 Rhodopseudomonas palustris BisA53 4359176 YP_780402.1 CDS RPE_1472 NC_008435.1 1647819 1648589 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_1453 ABC transporter related; ABC transporter-like protein 1647819..1648589 Rhodopseudomonas palustris BisA53 4359177 YP_780403.1 CDS RPE_1473 NC_008435.1 1648606 1649487 D PFAM: Mammalian cell entry related domain protein; KEGG: rpc:RPC_1454 mammalian cell entry related; hypothetical protein 1648606..1649487 Rhodopseudomonas palustris BisA53 4359178 YP_780404.1 CDS RPE_1474 NC_008435.1 1649891 1656244 R KEGG: rpc:RPC_1455 hypothetical protein; hypothetical protein complement(1649891..1656244) Rhodopseudomonas palustris BisA53 4359179 YP_780405.1 CDS RPE_1475 NC_008435.1 1656549 1656923 D PFAM: Hpt domain protein; KEGG: rpc:RPC_1456 Hpt domain protein; Hpt protein 1656549..1656923 Rhodopseudomonas palustris BisA53 4359180 YP_780406.1 CDS RPE_1476 NC_008435.1 1657054 1657374 D PFAM: ferredoxin; KEGG: rpc:RPC_1457 ferredoxin; ferredoxin 1657054..1657374 Rhodopseudomonas palustris BisA53 4359181 YP_780407.1 CDS RPE_1477 NC_008435.1 1657518 1657973 R PFAM: thioesterase superfamily protein; KEGG: rpd:RPD_1644 thioesterase superfamily; thioesterase superfamily protein complement(1657518..1657973) Rhodopseudomonas palustris BisA53 4359182 YP_780408.1 CDS RPE_1478 NC_008435.1 1658149 1659177 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: rpd:RPD_1645 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin-disulfide reductase 1658149..1659177 Rhodopseudomonas palustris BisA53 4359183 YP_780409.1 CDS RPE_1479 NC_008435.1 1659270 1659551 R hypothetical protein complement(1659270..1659551) Rhodopseudomonas palustris BisA53 4359184 YP_780410.1 CDS RPE_1480 NC_008435.1 1659880 1660167 R KEGG: rpa:RPA3375 hypothetical protein; hypothetical protein complement(1659880..1660167) Rhodopseudomonas palustris BisA53 4359185 YP_780411.1 CDS RPE_1481 NC_008435.1 1660183 1663383 R KEGG: cgb:cg3398 DNA or RNA helicase of superfamily II; superfamily II DNA/RNA helicase complement(1660183..1663383) Rhodopseudomonas palustris BisA53 4359186 YP_780412.1 CDS RPE_1482 NC_008435.1 1663841 1665436 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_1221 periplasmic sensor hybrid histidine kinase; periplasmic sensor hybrid histidine kinase 1663841..1665436 Rhodopseudomonas palustris BisA53 4359187 YP_780413.1 CDS RPE_1483 NC_008435.1 1665555 1668047 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE domain protein; KEGG: rpc:RPC_1464 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains); diguanylate cyclase/phosphodiesterase complement(1665555..1668047) Rhodopseudomonas palustris BisA53 4359188 YP_780414.1 CDS RPE_1484 NC_008435.1 1668457 1669137 D KEGG: rpc:RPC_1465 hypothetical protein; hypothetical protein 1668457..1669137 Rhodopseudomonas palustris BisA53 4359189 YP_780415.1 CDS RPE_1485 NC_008435.1 1669180 1669878 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_1466 diguanylate cyclase (GGDEF domain); diguanylate cyclase complement(1669180..1669878) Rhodopseudomonas palustris BisA53 4359190 YP_780416.1 CDS RPE_1486 NC_008435.1 1670079 1671176 R PFAM: cobalamin B12-binding domain protein; KEGG: rpc:RPC_1467 cobalamin B12-binding; cobalamin B12-binding domain-containing protein complement(1670079..1671176) Rhodopseudomonas palustris BisA53 4359191 YP_780417.1 CDS RPE_1487 NC_008435.1 1671544 1673553 R KEGG: rpc:RPC_1468 hypothetical protein; hypothetical protein complement(1671544..1673553) Rhodopseudomonas palustris BisA53 4358730 YP_780418.1 CDS RPE_1488 NC_008435.1 1673612 1674130 R PFAM: GCN5-related N-acetyltransferase; KEGG: stm:STM2905 putative acetyltransferase; N-acetyltransferase GCN5 complement(1673612..1674130) Rhodopseudomonas palustris BisA53 4358731 YP_780419.1 CDS RPE_1489 NC_008435.1 1674127 1674402 R KEGG: plu:plu3889 hypothetical protein; hypothetical protein complement(1674127..1674402) Rhodopseudomonas palustris BisA53 4358732 YP_780420.1 CDS RPE_1490 NC_008435.1 1674484 1675584 R KEGG: rpc:RPC_1469 hypothetical protein; hypothetical protein complement(1674484..1675584) Rhodopseudomonas palustris BisA53 4358733 YP_780421.1 CDS RPE_1491 NC_008435.1 1675977 1676483 D PFAM: protein of unknown function DUF892; KEGG: rpc:RPC_1470 protein of unknown function DUF892; hypothetical protein 1675977..1676483 Rhodopseudomonas palustris BisA53 4358734 YP_780422.1 CDS RPE_1492 NC_008435.1 1676580 1677014 R KEGG: rpc:RPC_1471 hypothetical protein; hypothetical protein complement(1676580..1677014) Rhodopseudomonas palustris BisA53 4358735 YP_780423.1 CDS RPE_1493 NC_008435.1 1677130 1677744 D KEGG: rpc:RPC_1472 hypothetical protein; hypothetical protein 1677130..1677744 Rhodopseudomonas palustris BisA53 4358736 YP_780424.1 CDS RPE_1494 NC_008435.1 1677975 1679192 D hypothetical protein 1677975..1679192 Rhodopseudomonas palustris BisA53 4358737 YP_780425.1 CDS RPE_1495 NC_008435.1 1680163 1680411 R KEGG: bcl:ABC1987 hypothetical protein; hypothetical protein complement(1680163..1680411) Rhodopseudomonas palustris BisA53 4358738 YP_780426.1 CDS RPE_1496 NC_008435.1 1680521 1682032 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpc:RPC_3408 ErfK/YbiS/YcfS/YnhG; hypothetical protein 1680521..1682032 Rhodopseudomonas palustris BisA53 4358739 YP_780427.1 CDS RPE_1497 NC_008435.1 1682144 1682569 R PFAM: UspA domain protein; KEGG: rpc:RPC_1477 UspA; UspA domain-containing protein complement(1682144..1682569) Rhodopseudomonas palustris BisA53 4358740 YP_780428.1 CDS RPE_1498 NC_008435.1 1682658 1683200 R PFAM: Phosphoglycerate mutase; KEGG: rpc:RPC_1478 putative phosphohistidine phosphatase, SixA; putative phosphohistidine phosphatase SixA complement(1682658..1683200) Rhodopseudomonas palustris BisA53 4358741 YP_780429.1 CDS RPE_1499 NC_008435.1 1683355 1684782 D PFAM: FAD dependent oxidoreductase; KEGG: rpc:RPC_1479 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1683355..1684782 Rhodopseudomonas palustris BisA53 4358742 YP_780430.1 CDS RPE_1500 NC_008435.1 1684858 1685355 D this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1684858..1685355 Rhodopseudomonas palustris BisA53 4358743 YP_780431.1 CDS RPE_1501 NC_008435.1 1685580 1685849 R KEGG: rpa:RPA3935 hypothetical protein; hypothetical protein complement(1685580..1685849) Rhodopseudomonas palustris BisA53 4358744 YP_780432.1 CDS RPE_1502 NC_008435.1 1685853 1686125 R hypothetical protein complement(1685853..1686125) Rhodopseudomonas palustris BisA53 4358745 YP_780433.1 CDS RPE_1503 NC_008435.1 1686221 1688029 D PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: rpb:RPB_3817 hypothetical protein; flagellar basal body FlaE domain-containing protein 1686221..1688029 Rhodopseudomonas palustris BisA53 4358746 YP_780434.1 CDS RPE_1504 NC_008435.1 1688078 1689967 D TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rpc:RPC_1486 flagellar hook-associated protein; flagellar hook-associated protein 1688078..1689967 Rhodopseudomonas palustris BisA53 4358747 YP_780435.1 CDS RPE_1505 NC_008435.1 1689976 1691580 D KEGG: rpa:RPA3930 hypothetical protein; hypothetical protein 1689976..1691580 Rhodopseudomonas palustris BisA53 4359941 YP_780436.1 CDS RPE_1506 NC_008435.1 1691859 1692446 D KEGG: cbu:CBU_0674 sugar isomerase family protein; sugar isomerase 1691859..1692446 Rhodopseudomonas palustris BisA53 4359942 YP_780437.1 CDS RPE_1507 NC_008435.1 1692446 1693006 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: cbu:CBU_0673 histidine biosynthesis bifunctional protein HisB; histidinol-phosphate phosphatase family protein 1692446..1693006 Rhodopseudomonas palustris BisA53 4359943 YP_780438.1 CDS RPE_1508 NC_008435.1 1692993 1693775 D similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; putative translaldolase 1692993..1693775 Rhodopseudomonas palustris BisA53 4359944 YP_780439.1 CDS RPE_1509 NC_008435.1 1693759 1694772 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: cbu:CBU_0676 NAD dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1693759..1694772 Rhodopseudomonas palustris BisA53 4359945 YP_780440.1 CDS RPE_1510 NC_008435.1 1694783 1695778 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: cbu:CBU_0677 NAD dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 1694783..1695778 Rhodopseudomonas palustris BisA53 4359946 YP_780441.1 CDS RPE_1511 NC_008435.1 1695791 1697341 D TIGRFAM: cytidyltransferase-related domain; PFAM: cytidylyltransferase; PfkB domain protein; KEGG: cbu:CBU_0678 ADP-heptose synthase, putative; cytidyltransferase-like protein 1695791..1697341 Rhodopseudomonas palustris BisA53 4359947 YP_780442.1 CDS RPE_1512 NC_008435.1 1697346 1698287 D PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: cbu:CBU_0679 oxidoreductase, Gfo/Idh/MocA family; oxidoreductase domain-containing protein 1697346..1698287 Rhodopseudomonas palustris BisA53 4359948 YP_780443.1 CDS RPE_1513 NC_008435.1 1698284 1699561 D PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: cbu:CBU_0680 UDP-glucose/GDP-mannose dehydrogenase family protein; UDP-glucose/GDP-mannose dehydrogenase 1698284..1699561 Rhodopseudomonas palustris BisA53 4359949 YP_780444.1 CDS RPE_1514 NC_008435.1 1699572 1700450 D PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: cbu:CBU_0681 hypothetical protein; NAD-dependent epimerase/dehydratase 1699572..1700450 Rhodopseudomonas palustris BisA53 4359950 YP_780445.1 CDS RPE_1515 NC_008435.1 1700443 1701099 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cbu:CBU_0682 hypothetical protein; type 11 methyltransferase 1700443..1701099 Rhodopseudomonas palustris BisA53 4359951 YP_780446.1 CDS RPE_1516 NC_008435.1 1701137 1702129 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: rpa:RPA3925 putative dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 1701137..1702129 Rhodopseudomonas palustris BisA53 4359952 YP_780447.1 CDS RPE_1517 NC_008435.1 1702134 1702955 D PFAM: Transketolase domain protein; KEGG: mag:amb0066 putative transketolase N-terminal section; transketolase domain-containing protein 1702134..1702955 Rhodopseudomonas palustris BisA53 4359953 YP_780448.1 CDS RPE_1518 NC_008435.1 1702959 1703876 D PFAM: Transketolase, central region; Transketolase domain protein; KEGG: bja:blr5427 hypothetical transketolase family protein; transketolase, central region 1702959..1703876 Rhodopseudomonas palustris BisA53 4359954 YP_780449.1 CDS RPE_1519 NC_008435.1 1703899 1704396 D KEGG: mag:amb0076 hypothetical protein; hypothetical protein 1703899..1704396 Rhodopseudomonas palustris BisA53 4359955 YP_780450.1 CDS RPE_1520 NC_008435.1 1704428 1705102 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: nfa:nfa29060 hypothetical protein; type 11 methyltransferase 1704428..1705102 Rhodopseudomonas palustris BisA53 4359956 YP_780451.1 CDS RPE_1521 NC_008435.1 1705201 1706361 D PFAM: aminotransferase, class V; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mag:amb0075 predicted pyridoxal phosphate-dependent enzyme; DegT/DnrJ/EryC1/StrS aminotransferase 1705201..1706361 Rhodopseudomonas palustris BisA53 4359957 YP_780452.1 CDS RPE_1522 NC_008435.1 1706404 1707177 D PFAM: NodS family protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: nwi:Nwi_0650 hypothetical protein; type 11 methyltransferase 1706404..1707177 Rhodopseudomonas palustris BisA53 4358068 YP_780453.1 CDS RPE_1523 NC_008435.1 1707639 1710302 D structural flagella protein; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellin 1707639..1710302 Rhodopseudomonas palustris BisA53 4358069 YP_780454.1 CDS RPE_1524 NC_008435.1 1710583 1712781 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpb:RPB_3801 TPR repeat protein; hypothetical protein complement(1710583..1712781) Rhodopseudomonas palustris BisA53 4358070 YP_780455.1 CDS RPE_1525 NC_008435.1 1713307 1715964 D structural flagella protein; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellin 1713307..1715964 Rhodopseudomonas palustris BisA53 4358071 YP_780456.1 CDS flbT NC_008435.1 1716190 1716567 D post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA; Bradyrhizobium has one thick and several thin flagella, the Bradyrhizobium protein in this cluster is associated with the thin flagella; flagellar biosynthesis repressor FlbT 1716190..1716567 Rhodopseudomonas palustris BisA53 4358072 YP_780457.1 CDS flaF NC_008435.1 1716571 1716936 D acts as an activator of flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum; flagellar biosynthesis regulatory protein FlaF 1716571..1716936 Rhodopseudomonas palustris BisA53 4358073 YP_780458.1 CDS RPE_1528 NC_008435.1 1717074 1717448 R KEGG: rpc:RPC_1493 hypothetical protein; hypothetical protein complement(1717074..1717448) Rhodopseudomonas palustris BisA53 4358074 YP_780459.1 CDS RPE_1529 NC_008435.1 1717623 1718114 R KEGG: rpc:RPC_1495 hypothetical protein; hypothetical protein complement(1717623..1718114) Rhodopseudomonas palustris BisA53 4358075 YP_780460.1 CDS RPE_1530 NC_008435.1 1718134 1718478 R KEGG: rpc:RPC_1496 hypothetical protein; chemotactic signal-response protein CheL complement(1718134..1718478) Rhodopseudomonas palustris BisA53 4358076 YP_780461.1 CDS flgI NC_008435.1 1718478 1719614 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein complement(1718478..1719614) Rhodopseudomonas palustris BisA53 4358077 YP_780462.1 CDS fliX NC_008435.1 1719924 1720334 D regulator of the sigma 54 transcriptional activator FlbD; represses FlbD when the class II flagellar structure is absent and activates FlbD when the structure is present; flagellar assembly regulator FliX 1719924..1720334 Rhodopseudomonas palustris BisA53 4358078 YP_780463.1 CDS RPE_1533 NC_008435.1 1720501 1720911 D TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: rpc:RPC_1499 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator 1720501..1720911 Rhodopseudomonas palustris BisA53 4358079 YP_780464.1 CDS RPE_1534 NC_008435.1 1721746 1723446 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_4407 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1721746..1723446 Rhodopseudomonas palustris BisA53 4358080 YP_780465.1 CDS flgH NC_008435.1 1723744 1724502 R part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein complement(1723744..1724502) Rhodopseudomonas palustris BisA53 4358081 YP_780466.1 CDS flgA NC_008435.1 1724508 1725566 R required for the assembly of the flagellar basal body P-ring; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum; flagellar basal body P-ring biosynthesis protein FlgA complement(1724508..1725566) Rhodopseudomonas palustris BisA53 4358082 YP_780467.1 CDS flgG NC_008435.1 1725574 1726362 R makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella; flagellar basal body rod protein FlgG complement(1725574..1726362) Rhodopseudomonas palustris BisA53 4358083 YP_780468.1 CDS flgF NC_008435.1 1726384 1727148 R FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum; flagellar basal body rod protein FlgF complement(1726384..1727148) Rhodopseudomonas palustris BisA53 4358084 YP_780469.1 CDS fliL NC_008435.1 1727502 1727996 D interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 1727502..1727996 Rhodopseudomonas palustris BisA53 4358085 YP_780470.1 CDS fliM NC_008435.1 1728015 1729226 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellar motor switch protein FliM 1728015..1729226 Rhodopseudomonas palustris BisA53 4360235 YP_780471.1 CDS RPE_1541 NC_008435.1 1729223 1729657 D KEGG: rpc:RPC_1510 hypothetical protein; hypothetical protein 1729223..1729657 Rhodopseudomonas palustris BisA53 4360236 YP_780472.1 CDS RPE_1542 NC_008435.1 1729654 1730403 D KEGG: rpc:RPC_1511 hypothetical protein; hypothetical protein 1729654..1730403 Rhodopseudomonas palustris BisA53 4360237 YP_780473.1 CDS RPE_1543 NC_008435.1 1730513 1734385 D KEGG: rpc:RPC_1512 tetratricopeptide TPR_2; hypothetical protein 1730513..1734385 Rhodopseudomonas palustris BisA53 4360238 YP_780474.1 CDS RPE_1544 NC_008435.1 1734585 1735865 D PFAM: major facilitator superfamily MFS_1; KEGG: xcb:XC_1456 transmembrane transport protein; major facilitator transporter 1734585..1735865 Rhodopseudomonas palustris BisA53 4360239 YP_780475.1 CDS RPE_1545 NC_008435.1 1735975 1737678 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: rpc:RPC_3380 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1735975..1737678) Rhodopseudomonas palustris BisA53 4360240 YP_780476.1 CDS RPE_1546 NC_008435.1 1738050 1739312 R KEGG: rpd:RPD_3191 hypothetical protein; hypothetical protein complement(1738050..1739312) Rhodopseudomonas palustris BisA53 4360241 YP_780477.1 CDS RPE_1547 NC_008435.1 1739776 1742874 D KEGG: pfl:PFL_3578 sensory box sensor histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 1739776..1742874 Rhodopseudomonas palustris BisA53 4360242 YP_780478.1 CDS RPE_1548 NC_008435.1 1743033 1743620 R KEGG: nha:Nham_1689 hypothetical protein; hypothetical protein complement(1743033..1743620) Rhodopseudomonas palustris BisA53 4360243 YP_780479.1 CDS fliP NC_008435.1 1743925 1744689 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(1743925..1744689) Rhodopseudomonas palustris BisA53 4360244 YP_780480.1 CDS RPE_1550 NC_008435.1 1744686 1745801 R KEGG: rpc:RPC_1516 hypothetical protein; hypothetical protein complement(1744686..1745801) Rhodopseudomonas palustris BisA53 4360245 YP_780481.1 CDS flgB NC_008435.1 1746212 1746622 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellar basal body rod protein FlgB 1746212..1746622 Rhodopseudomonas palustris BisA53 4360246 YP_780482.1 CDS flgC NC_008435.1 1746649 1747074 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1746649..1747074 Rhodopseudomonas palustris BisA53 4360247 YP_780483.1 CDS fliE NC_008435.1 1747088 1747417 D forms a junction between the M-ring and FlgB during flagella biosynthesis; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagella; flagellar hook-basal body protein FliE 1747088..1747417 Rhodopseudomonas palustris BisA53 4360248 YP_780484.1 CDS fliQ NC_008435.1 1747551 1747814 D FliQ, with proteins FliP and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellar biosynthesis protein FliQ 1747551..1747814 Rhodopseudomonas palustris BisA53 4360249 YP_780485.1 CDS fliR NC_008435.1 1747903 1748673 D FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1747903..1748673 Rhodopseudomonas palustris BisA53 4360250 YP_780486.1 CDS flhB NC_008435.1 1748683 1749753 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1748683..1749753 Rhodopseudomonas palustris BisA53 4360251 YP_780487.1 CDS RPE_1557 NC_008435.1 1749868 1752492 D KEGG: rpc:RPC_1524 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 1749868..1752492 Rhodopseudomonas palustris BisA53 4358451 YP_780488.1 CDS RPE_1558 NC_008435.1 1752574 1753368 D KEGG: sas:SAS0037 hypothetical protein; hypothetical protein 1752574..1753368 Rhodopseudomonas palustris BisA53 4358452 YP_780489.1 CDS RPE_1559 NC_008435.1 1753365 1753748 D KEGG: ret:RHE_PF00117 hypothetical protein; hypothetical protein 1753365..1753748 Rhodopseudomonas palustris BisA53 4358453 YP_780490.1 CDS RPE_1560 NC_008435.1 1753894 1754883 D PFAM: import inner membrane translocase, subunit Tim44; KEGG: rpc:RPC_1526 import inner membrane translocase, subunit Tim44; import inner membrane translocase subunit Tim44 1753894..1754883 Rhodopseudomonas palustris BisA53 4358454 YP_780491.1 CDS RPE_1561 NC_008435.1 1755047 1755748 D KEGG: rpd:RPD_1702 hypothetical protein; hypothetical protein 1755047..1755748 Rhodopseudomonas palustris BisA53 4358455 YP_780492.1 CDS RPE_1562 NC_008435.1 1755983 1756690 D PFAM: Glutathione S-transferase, C-terminal domain; KEGG: rpc:RPC_1528 glutathione S-transferase-like; glutathione S-transferase 1755983..1756690 Rhodopseudomonas palustris BisA53 4358456 YP_780493.1 CDS RPE_1563 NC_008435.1 1756878 1757552 R PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: bja:blr5799 hypothetical protein; isoprenylcysteine carboxyl methyltransferase complement(1756878..1757552) Rhodopseudomonas palustris BisA53 4358457 YP_780494.1 CDS RPE_1564 NC_008435.1 1757668 1757889 R KEGG: rpc:RPC_1529 formin; formin complement(1757668..1757889) Rhodopseudomonas palustris BisA53 4358458 YP_780495.1 CDS RPE_1565 NC_008435.1 1758131 1758595 R KEGG: rpb:RPB_3766 hypothetical protein; hypothetical protein complement(1758131..1758595) Rhodopseudomonas palustris BisA53 4358459 YP_780496.1 CDS RPE_1566 NC_008435.1 1759303 1760334 R PFAM: transposase IS116/IS110/IS902 family protein; KEGG: nha:Nham_3955 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein complement(1759303..1760334) Rhodopseudomonas palustris BisA53 4358460 YP_780497.1 CDS RPE_1568 NC_008435.1 1761505 1761735 D KEGG: rpa:RPA3877 hypothetical protein; hypothetical protein 1761505..1761735 Rhodopseudomonas palustris BisA53 4358462 YP_780498.1 CDS RPE_1569 NC_008435.1 1761937 1762158 D KEGG: rpd:RPD_1706 hypothetical protein; hypothetical protein 1761937..1762158 Rhodopseudomonas palustris BisA53 4358463 YP_780499.1 CDS RPE_1570 NC_008435.1 1762167 1762463 D PFAM: plasmid stabilization system; KEGG: rpc:RPC_1531 plasmid stabilization system; plasmid stabilization system protein 1762167..1762463 Rhodopseudomonas palustris BisA53 4358464 YP_780500.1 CDS RPE_1571 NC_008435.1 1762575 1764230 D TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: rpa:RPA3876 fumarate hydratase, class I; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta 1762575..1764230 Rhodopseudomonas palustris BisA53 4358465 YP_780501.1 CDS RPE_1572 NC_008435.1 1764396 1765079 D KEGG: rpd:RPD_1709 hypothetical protein; hypothetical protein 1764396..1765079 Rhodopseudomonas palustris BisA53 4358466 YP_780502.1 CDS RPE_1573 NC_008435.1 1765181 1765477 R KEGG: rpb:RPB_3761 hypothetical protein; hypothetical protein complement(1765181..1765477) Rhodopseudomonas palustris BisA53 4358467 YP_780503.1 CDS RPE_1574 NC_008435.1 1765760 1766479 D KEGG: rpc:RPC_1535 hypothetical protein; hypothetical protein 1765760..1766479 Rhodopseudomonas palustris BisA53 4358468 YP_780504.1 CDS RPE_1575 NC_008435.1 1766442 1767023 R KEGG: rpa:RPA3873 hypothetical protein; hypothetical protein complement(1766442..1767023) Rhodopseudomonas palustris BisA53 4357945 YP_780505.1 CDS RPE_1576 NC_008435.1 1767142 1768545 R PFAM: Carotenoid oxygenase; KEGG: rpc:RPC_1536 carotenoid oxygenase; carotenoid oxygenase complement(1767142..1768545) Rhodopseudomonas palustris BisA53 4357946 YP_780506.1 CDS RPE_1577 NC_008435.1 1768666 1769373 D PFAM: regulatory protein, TetR; KEGG: rpc:RPC_1537 putative transcriptional regulator, TetR family; TetR family transcriptional regulator 1768666..1769373 Rhodopseudomonas palustris BisA53 4357947 YP_780507.1 CDS RPE_1578 NC_008435.1 1769561 1770214 D PFAM: nuclear protein SET; KEGG: rpc:RPC_1538 nuclear protein SET; nuclear protein SET 1769561..1770214 Rhodopseudomonas palustris BisA53 4357948 YP_780508.1 CDS RPE_1579 NC_008435.1 1770211 1770609 R KEGG: rpd:RPD_1715 hypothetical protein; hypothetical protein complement(1770211..1770609) Rhodopseudomonas palustris BisA53 4357949 YP_780509.1 CDS RPE_1580 NC_008435.1 1770720 1771553 D PFAM: helix-turn-helix domain protein; KEGG: rpb:RPB_3757 transcriptional regulator, XRE family; XRE family transcriptional regulator 1770720..1771553 Rhodopseudomonas palustris BisA53 4357950 YP_780510.1 CDS RPE_1581 NC_008435.1 1771633 1772307 D PFAM: DSBA oxidoreductase; KEGG: rpc:RPC_1542 DsbA oxidoreductase; DSBA oxidoreductase 1771633..1772307 Rhodopseudomonas palustris BisA53 4357951 YP_780511.1 CDS RPE_1582 NC_008435.1 1772326 1773396 R KEGG: rpa:RPA3867 hypothetical protein; hypothetical protein complement(1772326..1773396) Rhodopseudomonas palustris BisA53 4357952 YP_780512.1 CDS RPE_1583 NC_008435.1 1773695 1775134 D PFAM: peptidase C14, caspase catalytic subunit p20; KEGG: rpb:RPB_3754 peptidase C14, caspase catalytic subunit P20; peptidase C14, caspase catalytic subunit p20 1773695..1775134 Rhodopseudomonas palustris BisA53 4357953 YP_780513.1 CDS RPE_1584 NC_008435.1 1775439 1775771 D KEGG: rpc:RPC_1543 hypothetical protein; hypothetical protein 1775439..1775771 Rhodopseudomonas palustris BisA53 4357954 YP_780514.1 CDS RPE_1585 NC_008435.1 1775826 1776032 R KEGG: rpc:RPC_1545 hypothetical protein; hypothetical protein complement(1775826..1776032) Rhodopseudomonas palustris BisA53 4357955 YP_780515.1 CDS RPE_1586 NC_008435.1 1776213 1776389 R KEGG: rpc:RPC_1546 hypothetical protein; hypothetical protein complement(1776213..1776389) Rhodopseudomonas palustris BisA53 4357956 YP_780516.1 CDS RPE_1587 NC_008435.1 1776615 1776965 R KEGG: rpc:RPC_1548 hypothetical protein; hypothetical protein complement(1776615..1776965) Rhodopseudomonas palustris BisA53 4357957 YP_780517.1 CDS RPE_1588 NC_008435.1 1777168 1777434 R KEGG: rpc:RPC_1550 hypothetical protein; hypothetical protein complement(1777168..1777434) Rhodopseudomonas palustris BisA53 4357958 YP_780518.1 CDS RPE_1589 NC_008435.1 1777596 1777784 D KEGG: rpc:RPC_1551 hypothetical protein; hypothetical protein 1777596..1777784 Rhodopseudomonas palustris BisA53 4357959 YP_780519.1 CDS RPE_1590 NC_008435.1 1777896 1778078 D KEGG: rpb:RPB_3744 hypothetical protein; hypothetical protein 1777896..1778078 Rhodopseudomonas palustris BisA53 4357960 YP_780520.1 CDS RPE_1591 NC_008435.1 1779130 1779489 R hypothetical protein complement(1779130..1779489) Rhodopseudomonas palustris BisA53 4357961 YP_780521.1 CDS RPE_1592 NC_008435.1 1779635 1779874 R PFAM: type IV pilus assembly PilZ; KEGG: rpa:RPA1825 hypothetical protein; type IV pilus assembly PilZ complement(1779635..1779874) Rhodopseudomonas palustris BisA53 4358879 YP_780522.1 CDS RPE_1593 NC_008435.1 1780933 1782150 D KEGG: lxx:Lxx24252 hypothetical protein; hypothetical protein 1780933..1782150 Rhodopseudomonas palustris BisA53 4358880 YP_780523.1 CDS recA NC_008435.1 1782617 1783705 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1782617..1783705 Rhodopseudomonas palustris BisA53 4358881 YP_780524.1 CDS RPE_1595 NC_008435.1 1784014 1786899 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(1784014..1786899) Rhodopseudomonas palustris BisA53 4358882 YP_780525.1 CDS RPE_1596 NC_008435.1 1787176 1787541 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(1787176..1787541) Rhodopseudomonas palustris BisA53 4358883 YP_780526.1 CDS gcvT NC_008435.1 1787551 1788702 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(1787551..1788702) Rhodopseudomonas palustris BisA53 4358884 YP_780527.1 CDS alaS NC_008435.1 1789126 1791807 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1789126..1791807 Rhodopseudomonas palustris BisA53 4358885 YP_780528.1 CDS RPE_1599 NC_008435.1 1792148 1794214 R PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: rpc:RPC_1575 peptidase S9, prolyl oligopeptidase active site region; prolyl oligopeptidase complement(1792148..1794214) Rhodopseudomonas palustris BisA53 4358886 YP_780529.1 CDS RPE_1600 NC_008435.1 1794304 1796079 R PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: rpb:RPB_3734 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(1794304..1796079) Rhodopseudomonas palustris BisA53 4358887 YP_780530.1 CDS RPE_1601 NC_008435.1 1796268 1797989 D PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: rpc:RPC_1573 potassium efflux system protein; potassium efflux system protein 1796268..1797989 Rhodopseudomonas palustris BisA53 4358888 YP_780531.1 CDS RPE_1602 NC_008435.1 1798198 1799427 R Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase complement(1798198..1799427) Rhodopseudomonas palustris BisA53 4358889 YP_780532.1 CDS RPE_1603 NC_008435.1 1799676 1800869 D TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); protein of unknown function DUF559; KEGG: rpc:RPC_1577 RNA methyltransferase TrmH, group 1; RNA methyltransferase 1799676..1800869 Rhodopseudomonas palustris BisA53 4358890 YP_780533.1 CDS RPE_1604 NC_008435.1 1800948 1801220 D KEGG: rru:Rru_A3537 predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain; CopG/Arc/MetJ family transcriptional regulator 1800948..1801220 Rhodopseudomonas palustris BisA53 4358891 YP_780534.1 CDS RPE_1605 NC_008435.1 1802435 1802917 D activates RNA polymerase to cleave back-tracked RNA during elongational pausing; transcription elongation factor regulatory protein 1802435..1802917 Rhodopseudomonas palustris BisA53 4358892 YP_780535.1 CDS RPE_1606 NC_008435.1 1803134 1803457 R PFAM: protein of unknown function DUF1476; KEGG: rpc:RPC_1583 protein of unknown function DUF1476; hypothetical protein complement(1803134..1803457) Rhodopseudomonas palustris BisA53 4358893 YP_780536.1 CDS RPE_1607 NC_008435.1 1803730 1804527 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1803730..1804527 Rhodopseudomonas palustris BisA53 4358894 YP_780537.1 CDS RPE_1608 NC_008435.1 1804692 1804934 D With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway; phosphoribosylformylglycinamidine synthase subunit PurS 1804692..1804934 Rhodopseudomonas palustris BisA53 4358895 YP_780538.1 CDS RPE_1609 NC_008435.1 1804955 1805209 D KEGG: rpb:RPB_3717 hypothetical protein; hypothetical protein 1804955..1805209 Rhodopseudomonas palustris BisA53 4358896 YP_780539.1 CDS RPE_1610 NC_008435.1 1805206 1805907 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 1805206..1805907 Rhodopseudomonas palustris BisA53 4360082 YP_780540.1 CDS RPE_1611 NC_008435.1 1806043 1806246 D hypothetical protein 1806043..1806246 Rhodopseudomonas palustris BisA53 4360083 YP_780541.1 CDS RPE_1612 NC_008435.1 1806458 1806946 R PFAM: thioesterase superfamily protein; KEGG: rpc:RPC_1590 thioesterase superfamily; thioesterase superfamily protein complement(1806458..1806946) Rhodopseudomonas palustris BisA53 4360084 YP_780542.1 CDS RPE_1613 NC_008435.1 1807138 1809351 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 1807138..1809351 Rhodopseudomonas palustris BisA53 4360085 YP_780543.1 CDS RPE_1614 NC_008435.1 1809761 1810960 R PFAM: acyltransferase 3; KEGG: rpc:RPC_1592 acyltransferase 3; acyltransferase 3 complement(1809761..1810960) Rhodopseudomonas palustris BisA53 4360086 YP_780544.1 CDS RPE_1615 NC_008435.1 1811047 1811412 R PFAM: protein of unknown function DUF427; KEGG: bja:blr5716 hypothetical protein; hypothetical protein complement(1811047..1811412) Rhodopseudomonas palustris BisA53 4360087 YP_780545.1 CDS RPE_1616 NC_008435.1 1811581 1811817 D PFAM: BolA family protein; KEGG: rpc:RPC_1594 BolA-like protein; morphology/transcription regulator BolA family protein 1811581..1811817 Rhodopseudomonas palustris BisA53 4360088 YP_780546.1 CDS RPE_1617 NC_008435.1 1811853 1813031 D PFAM: low temperature requirement A; KEGG: rpc:RPC_1595 low temperature requirement A; low temperature requirement A 1811853..1813031 Rhodopseudomonas palustris BisA53 4360089 YP_780547.1 CDS RPE_1618 NC_008435.1 1813145 1814113 R KEGG: rpc:RPC_1597 hypothetical protein; hypothetical protein complement(1813145..1814113) Rhodopseudomonas palustris BisA53 4360090 YP_780548.1 CDS RPE_1619 NC_008435.1 1814156 1815403 R PFAM: protein of unknown function DUF323; KEGG: rpc:RPC_1598 protein of unknown function DUF323; hypothetical protein complement(1814156..1815403) Rhodopseudomonas palustris BisA53 4360091 YP_780549.1 CDS RPE_1620 NC_008435.1 1815654 1815986 D TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: rpd:RPD_1760 glutaredoxin-related protein; glutaredoxin-like protein 1815654..1815986 Rhodopseudomonas palustris BisA53 4360092 YP_780550.1 CDS RPE_1621 NC_008435.1 1816168 1816728 D PFAM: Appr-1-p processing domain protein; KEGG: rpc:RPC_1600 Appr-1-p processing; appr-1-p processing domain-containing protein 1816168..1816728 Rhodopseudomonas palustris BisA53 4360093 YP_780551.1 CDS RPE_1622 NC_008435.1 1816774 1818042 D PFAM: beta-lactamase; KEGG: rpc:RPC_1601 beta-lactamase; beta-lactamase 1816774..1818042 Rhodopseudomonas palustris BisA53 4360094 YP_780552.1 CDS RPE_1623 NC_008435.1 1818218 1819048 D KEGG: lxx:Lxx01200 hypothetical protein; hypothetical protein 1818218..1819048 Rhodopseudomonas palustris BisA53 4360095 YP_780553.1 CDS RPE_1624 NC_008435.1 1819462 1820511 D PFAM: fatty acid desaturase; KEGG: rpa:RPA1603 putative fatty acid desaturase; fatty acid desaturase 1819462..1820511 Rhodopseudomonas palustris BisA53 4360096 YP_780554.1 CDS RPE_1625 NC_008435.1 1820557 1820937 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: hch:HCH_03828 lactoylglutathione lyase; glyoxalase/bleomycin resistance protein/dioxygenase complement(1820557..1820937) Rhodopseudomonas palustris BisA53 4360097 YP_780555.1 CDS RPE_1626 NC_008435.1 1821321 1821524 R KEGG: rpd:RPD_0266 hypothetical protein; hypothetical protein complement(1821321..1821524) Rhodopseudomonas palustris BisA53 4360098 YP_780556.1 CDS RPE_1627 NC_008435.1 1821835 1822497 D PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: rpc:RPC_2348 putative signal transduction histidine kinase; putative signal transduction histidine kinase 1821835..1822497 Rhodopseudomonas palustris BisA53 4358950 YP_780557.1 CDS RPE_1628 NC_008435.1 1822556 1822801 D hypothetical protein 1822556..1822801 Rhodopseudomonas palustris BisA53 4358951 YP_780558.1 CDS RPE_1629 NC_008435.1 1823002 1823274 D hypothetical protein 1823002..1823274 Rhodopseudomonas palustris BisA53 4358952 YP_780559.1 CDS RPE_1630 NC_008435.1 1823451 1824518 R PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bja:blr5707 putative threonine aldolase; aromatic amino acid beta-eliminating lyase/threonine aldolase complement(1823451..1824518) Rhodopseudomonas palustris BisA53 4358953 YP_780560.1 CDS rpsD NC_008435.1 1824616 1825284 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(1824616..1825284) Rhodopseudomonas palustris BisA53 4358954 YP_780561.1 CDS RPE_1632 NC_008435.1 1825671 1826285 R PFAM: GCN5-related N-acetyltransferase; KEGG: rpc:RPC_4384 hypothetical protein; N-acetyltransferase GCN5 complement(1825671..1826285) Rhodopseudomonas palustris BisA53 4358955 YP_780562.1 CDS RPE_1633 NC_008435.1 1826684 1827475 R KEGG: rpc:RPC_1604 hypothetical protein; hypothetical protein complement(1826684..1827475) Rhodopseudomonas palustris BisA53 4358956 YP_780563.1 CDS RPE_1634 NC_008435.1 1827513 1827893 R PFAM: Cupin 2, conserved barrel domain protein; KEGG: rpc:RPC_1605 cupin 2, conserved barrel; cupin 2 domain-containing protein complement(1827513..1827893) Rhodopseudomonas palustris BisA53 4358957 YP_780564.1 CDS RPE_1635 NC_008435.1 1827919 1828755 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(1827919..1828755) Rhodopseudomonas palustris BisA53 4358958 YP_780565.1 CDS RPE_1636 NC_008435.1 1828905 1829456 D PFAM: cytochrome B561; KEGG: bja:bll5701 putative cytochrome b561; cytochrome B561 1828905..1829456 Rhodopseudomonas palustris BisA53 4358959 YP_780566.1 CDS RPE_1637 NC_008435.1 1829453 1830076 R PFAM: MOSC domain containing protein; KEGG: rpc:RPC_1607 MOSC; MOSC domain-containing protein complement(1829453..1830076) Rhodopseudomonas palustris BisA53 4358960 YP_780567.1 CDS RPE_1638 NC_008435.1 1830091 1830618 R KEGG: rpa:RPA3582 hypothetical protein; hypothetical protein complement(1830091..1830618) Rhodopseudomonas palustris BisA53 4358961 YP_780568.1 CDS RPE_1639 NC_008435.1 1830603 1830923 R KEGG: rpc:RPC_1609 hypothetical protein; hypothetical protein complement(1830603..1830923) Rhodopseudomonas palustris BisA53 4358962 YP_780569.1 CDS RPE_1640 NC_008435.1 1831155 1832462 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1831155..1832462) Rhodopseudomonas palustris BisA53 4358963 YP_780570.1 CDS RPE_1641 NC_008435.1 1833862 1834431 D hypothetical protein 1833862..1834431 Rhodopseudomonas palustris BisA53 4358964 YP_780571.1 CDS RPE_1642 NC_008435.1 1835939 1836634 R PFAM: ribulose-phosphate 3-epimerase; KEGG: rpd:RPD_1771 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(1835939..1836634) Rhodopseudomonas palustris BisA53 4358965 YP_780572.1 CDS RPE_1643 NC_008435.1 1836871 1837449 D PFAM: Calcium-binding EF-hand-containing protein; KEGG: rpc:RPC_1615 calcium-binding EF-hand; signal transduction protein 1836871..1837449 Rhodopseudomonas palustris BisA53 4358966 YP_780573.1 CDS RPE_1644 NC_008435.1 1837626 1838627 R PFAM: peptidase S58, DmpA; KEGG: nha:Nham_2617 peptidase S58, DmpA; peptidase S58, DmpA complement(1837626..1838627) Rhodopseudomonas palustris BisA53 4358967 YP_780574.1 CDS RPE_1645 NC_008435.1 1838741 1839475 D PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: rpc:RPC_1617 cytochrome c biogenesis protein, transmembrane region; cytochrome c biogenesis protein, transmembrane region 1838741..1839475 Rhodopseudomonas palustris BisA53 4359053 YP_780575.1 CDS RPE_1646 NC_008435.1 1839593 1839880 D PFAM: Excinuclease ABC, C subunit domain protein; KEGG: rpa:RPA3811 excinuclease ABC, C subunit, N-terminal; excinuclease ABC subunit C 1839593..1839880 Rhodopseudomonas palustris BisA53 4359054 YP_780576.1 CDS RPE_1647 NC_008435.1 1840141 1841262 R PFAM: Extracellular ligand-binding receptor; KEGG: rpc:RPC_1618 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(1840141..1841262) Rhodopseudomonas palustris BisA53 4359055 YP_780577.1 CDS RPE_1648 NC_008435.1 1841564 1842319 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_1619 ABC transporter related; ABC transporter-like protein complement(1841564..1842319) Rhodopseudomonas palustris BisA53 4359056 YP_780578.1 CDS RPE_1649 NC_008435.1 1842447 1843286 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_1620 ABC transporter related; ABC transporter-like protein complement(1842447..1843286) Rhodopseudomonas palustris BisA53 4359057 YP_780579.1 CDS RPE_1650 NC_008435.1 1843283 1844617 R PFAM: inner-membrane translocator; KEGG: rpc:RPC_1621 inner-membrane translocator; inner-membrane translocator complement(1843283..1844617) Rhodopseudomonas palustris BisA53 4359058 YP_780580.1 CDS RPE_1651 NC_008435.1 1844626 1845543 R PFAM: inner-membrane translocator; KEGG: rpd:RPD_1779 inner-membrane translocator; inner-membrane translocator complement(1844626..1845543) Rhodopseudomonas palustris BisA53 4359059 YP_780581.1 CDS RPE_1652 NC_008435.1 1846212 1846766 D KEGG: rpc:RPC_1623 hypothetical protein; hypothetical protein 1846212..1846766 Rhodopseudomonas palustris BisA53 4359060 YP_780582.1 CDS RPE_1653 NC_008435.1 1847074 1847856 R TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_1629 3-oxoadipate enol-lactonase; 3-oxoadipate enol-lactonase complement(1847074..1847856) Rhodopseudomonas palustris BisA53 4359061 YP_780583.1 CDS RPE_1654 NC_008435.1 1848127 1848582 D PFAM: carbon monoxide dehydrogenase subunit G; KEGG: rpa:RPA3804 hypothetical protein; carbon monoxide dehydrogenase subunit G 1848127..1848582 Rhodopseudomonas palustris BisA53 4359062 YP_780584.1 CDS RPE_1655 NC_008435.1 1848942 1849427 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rpc:RPC_1631 (2Fe-2S)-binding; 2Fe-2S iron-sulfur cluster binding domain-containing protein 1848942..1849427 Rhodopseudomonas palustris BisA53 4359063 YP_780585.1 CDS RPE_1656 NC_008435.1 1849477 1850319 D PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: rpc:RPC_1632 molybdopterin dehydrogenase, FAD-binding; molybdopterin dehydrogenase protein 1849477..1850319 Rhodopseudomonas palustris BisA53 4359064 YP_780586.1 CDS RPE_1657 NC_008435.1 1850330 1851238 D PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpc:RPC_1633 ATPase associated with various cellular activities, AAA_5; ATPase 1850330..1851238 Rhodopseudomonas palustris BisA53 4359065 YP_780587.1 CDS RPE_1658 NC_008435.1 1852029 1853228 D PFAM: VWA containing CoxE family protein; KEGG: rpc:RPC_1634 VWA containing CoxE-like; VWA domain CoxE-like family protein 1852029..1853228 Rhodopseudomonas palustris BisA53 4359066 YP_780588.1 CDS RPE_1659 NC_008435.1 1853265 1853597 D PFAM: protein of unknown function DUF182; KEGG: rpa:RPA3799 DUF182; hypothetical protein 1853265..1853597 Rhodopseudomonas palustris BisA53 4359067 YP_780589.1 CDS RPE_1660 NC_008435.1 1853600 1854301 D KEGG: rpa:RPA3798 xanthine dehydrogenase accessory factor; xanthine dehydrogenase accessory factor 1853600..1854301 Rhodopseudomonas palustris BisA53 4359068 YP_780590.1 CDS RPE_1661 NC_008435.1 1854298 1855902 D PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; molybdopterin binding domain; KEGG: rpc:RPC_1637 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase 1854298..1855902 Rhodopseudomonas palustris BisA53 4359069 YP_780591.1 CDS RPE_1662 NC_008435.1 1855897 1856769 R TIGRFAM: methyltransferase FkbM family; KEGG: ret:RHE_PE00048 hypothetical protein; FkbM family methyltransferase complement(1855897..1856769) Rhodopseudomonas palustris BisA53 4359070 YP_780592.1 CDS RPE_1663 NC_008435.1 1856907 1857299 D KEGG: rpc:RPC_1639 hypothetical protein; hypothetical protein 1856907..1857299 Rhodopseudomonas palustris BisA53 4359071 YP_780593.1 CDS RPE_1664 NC_008435.1 1857334 1857513 R KEGG: rpc:RPC_1641 hypothetical protein; hypothetical protein complement(1857334..1857513) Rhodopseudomonas palustris BisA53 4359072 YP_780594.1 CDS RPE_1665 NC_008435.1 1857688 1858464 D PFAM: regulatory protein, TetR; KEGG: rpa:RPA3791 probable transcriptional regulator, TetR family; TetR family transcriptional regulator 1857688..1858464 Rhodopseudomonas palustris BisA53 4359073 YP_780595.1 CDS RPE_1666 NC_008435.1 1858461 1859252 D KEGG: rpb:RPB_3668 putative efflux protein; putative efflux protein 1858461..1859252 Rhodopseudomonas palustris BisA53 4359074 YP_780596.1 CDS RPE_1667 NC_008435.1 1859249 1860184 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA3789 putative ATP-binding component of a transport system; ABC transporter-like protein 1859249..1860184 Rhodopseudomonas palustris BisA53 4359075 YP_780597.1 CDS RPE_1668 NC_008435.1 1860181 1861347 D PFAM: ABC-2 type transporter; KEGG: rpd:RPD_1794 ABC-2; ABC-2 type transporter 1860181..1861347 Rhodopseudomonas palustris BisA53 4359076 YP_780598.1 CDS RPE_1669 NC_008435.1 1861591 1862208 D KEGG: rpb:RPB_3664 hypothetical protein; hypothetical protein 1861591..1862208 Rhodopseudomonas palustris BisA53 4359077 YP_780599.1 CDS RPE_1670 NC_008435.1 1862306 1863043 R KEGG: rpc:RPC_1642 hypothetical protein; hypothetical protein complement(1862306..1863043) Rhodopseudomonas palustris BisA53 4359078 YP_780600.1 CDS RPE_1671 NC_008435.1 1863126 1863368 R KEGG: rpd:RPD_1797 hypothetical protein; hypothetical protein complement(1863126..1863368) Rhodopseudomonas palustris BisA53 4359079 YP_780601.1 CDS RPE_1672 NC_008435.1 1863471 1863932 R PFAM: protein of unknown function DUF1130; KEGG: rpc:RPC_1643 protein of unknown function DUF1130; hypothetical protein complement(1863471..1863932) Rhodopseudomonas palustris BisA53 4359080 YP_780602.1 CDS RPE_1673 NC_008435.1 1863968 1864771 R PFAM: protein of unknown function DUF72; KEGG: rpc:RPC_1644 protein of unknown function DUF72; hypothetical protein complement(1863968..1864771) Rhodopseudomonas palustris BisA53 4359081 YP_780603.1 CDS RPE_1674 NC_008435.1 1865025 1866158 D PFAM: glycosyl transferase, family 2; GtrA family protein; KEGG: rpc:RPC_1645 dolichyl-phosphate beta-D-mannosyltransferase; dolichyl-phosphate beta-D-mannosyltransferase 1865025..1866158 Rhodopseudomonas palustris BisA53 4359082 YP_780604.1 CDS RPE_1675 NC_008435.1 1866155 1867645 D PFAM: glycosyl transferase, family 39; KEGG: rpc:RPC_1646 glycosyl transferase, family 39; glycosyl transferase family protein 1866155..1867645 Rhodopseudomonas palustris BisA53 4359083 YP_780605.1 CDS RPE_1676 NC_008435.1 1867781 1868998 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpc:RPC_1647 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1867781..1868998 Rhodopseudomonas palustris BisA53 4359084 YP_780606.1 CDS RPE_1677 NC_008435.1 1869189 1870094 R PFAM: PfkB domain protein; KEGG: rpb:RPB_3654 PfkB; ribokinase-like domain-containing protein complement(1869189..1870094) Rhodopseudomonas palustris BisA53 4359085 YP_780607.1 CDS RPE_1678 NC_008435.1 1870278 1871147 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rpd:RPD_1806 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1870278..1871147 Rhodopseudomonas palustris BisA53 4359086 YP_780608.1 CDS RPE_1679 NC_008435.1 1871216 1871917 D PFAM: regulatory protein, TetR; KEGG: rpc:RPC_1649 transcriptional regulator, TetR family; TetR family transcriptional regulator 1871216..1871917 Rhodopseudomonas palustris BisA53 4359087 YP_780609.1 CDS RPE_1680 NC_008435.1 1871919 1873115 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rpc:RPC_1650 secretion protein HlyD; RND family efflux transporter MFP subunit 1871919..1873115 Rhodopseudomonas palustris BisA53 4359452 YP_780610.1 CDS RPE_1681 NC_008435.1 1873254 1876358 D PFAM: acriflavin resistance protein; KEGG: rpc:RPC_1651 acriflavin resistance protein; acriflavin resistance protein 1873254..1876358 Rhodopseudomonas palustris BisA53 4359453 YP_780611.1 CDS RPE_1682 NC_008435.1 1876441 1877694 D PFAM: FAD dependent oxidoreductase; KEGG: rpc:RPC_1652 D-amino-acid dehydrogenase; D-amino-acid dehydrogenase 1876441..1877694 Rhodopseudomonas palustris BisA53 4359454 YP_780612.1 CDS RPE_1683 NC_008435.1 1877798 1878052 D KEGG: rpc:RPC_1653 hypothetical protein; hypothetical protein 1877798..1878052 Rhodopseudomonas palustris BisA53 4359455 YP_780613.1 CDS RPE_1684 NC_008435.1 1878098 1878853 D PFAM: PGAP1 family protein; KEGG: rpd:RPD_1818 hypothetical protein; hypothetical protein 1878098..1878853 Rhodopseudomonas palustris BisA53 4359456 YP_780614.1 CDS RPE_1685 NC_008435.1 1879040 1879537 D TIGRFAM: phasin; KEGG: rpc:RPC_1658 phasin 2; phasin 2 1879040..1879537 Rhodopseudomonas palustris BisA53 4359457 YP_780615.1 CDS RPE_1686 NC_008435.1 1879576 1880025 D hypothetical protein 1879576..1880025 Rhodopseudomonas palustris BisA53 4359458 YP_780616.1 CDS RPE_1687 NC_008435.1 1881005 1882231 R PFAM: alpha/beta hydrolase fold; OsmC family protein; KEGG: rpc:RPC_1673 OsmC-like protein; OsmC-like protein complement(1881005..1882231) Rhodopseudomonas palustris BisA53 4359459 YP_780617.1 CDS RPE_1688 NC_008435.1 1882418 1883080 R PFAM: oxidoreductase, molybdopterin binding; KEGG: rpc:RPC_1672 oxidoreductase, molybdopterin binding; molybdopterin binding oxidoreductase complement(1882418..1883080) Rhodopseudomonas palustris BisA53 4359460 YP_780618.1 CDS RPE_1689 NC_008435.1 1883198 1884121 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rpc:RPC_1669 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase complement(1883198..1884121) Rhodopseudomonas palustris BisA53 4359461 YP_780619.1 CDS RPE_1690 NC_008435.1 1884141 1884266 R KEGG: rpc:RPC_1668 amidase, hydantoinase/carbamoylase; amidase, hydantoinase/carbamoylase complement(1884141..1884266) Rhodopseudomonas palustris BisA53 4359462 YP_780620.1 CDS RPE_1691 NC_008435.1 1884308 1885264 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_1667 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1884308..1885264) Rhodopseudomonas palustris BisA53 4359463 YP_780621.1 CDS RPE_1692 NC_008435.1 1885378 1886193 D PFAM: protein of unknown function DUF1445; KEGG: rpc:RPC_1666 protein of unknown function DUF1445; hypothetical protein 1885378..1886193 Rhodopseudomonas palustris BisA53 4359464 YP_780622.1 CDS RPE_1693 NC_008435.1 1886242 1887486 D PFAM: Extracellular ligand-binding receptor; KEGG: rpc:RPC_1665 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1886242..1887486 Rhodopseudomonas palustris BisA53 4359465 YP_780623.1 CDS RPE_1694 NC_008435.1 1887803 1888681 D PFAM: inner-membrane translocator; KEGG: rpc:RPC_1664 inner-membrane translocator; inner-membrane translocator 1887803..1888681 Rhodopseudomonas palustris BisA53 4359466 YP_780624.1 CDS RPE_1695 NC_008435.1 1888681 1889661 D PFAM: inner-membrane translocator; KEGG: rpd:RPD_1849 inner-membrane translocator; inner-membrane translocator 1888681..1889661 Rhodopseudomonas palustris BisA53 4359467 YP_780625.1 CDS RPE_1696 NC_008435.1 1889658 1890389 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_1662 ABC transporter related; ABC transporter-like protein 1889658..1890389 Rhodopseudomonas palustris BisA53 4359468 YP_780626.1 CDS RPE_1697 NC_008435.1 1890373 1891077 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_1661 ABC transporter related; ABC transporter-like protein 1890373..1891077 Rhodopseudomonas palustris BisA53 4359469 YP_780627.1 CDS RPE_1698 NC_008435.1 1891192 1891479 R PFAM: Excinuclease ABC, C subunit domain protein; KEGG: nha:Nham_0101 excinuclease ABC, C subunit-like; excinuclease ABC subunit C complement(1891192..1891479) Rhodopseudomonas palustris BisA53 4359470 YP_780628.1 CDS RPE_1699 NC_008435.1 1891641 1892423 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rpd:RPD_1855 hydroxypyruvate isomerase; hydroxypyruvate isomerase 1891641..1892423 Rhodopseudomonas palustris BisA53 4359471 YP_780629.1 CDS RPE_1700 NC_008435.1 1892555 1893673 D PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rpc:RPC_4622 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 1892555..1893673 Rhodopseudomonas palustris BisA53 4359472 YP_780630.1 CDS RPE_1701 NC_008435.1 1894004 1895512 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(1894004..1895512) Rhodopseudomonas palustris BisA53 4359473 YP_780631.1 CDS RPE_1702 NC_008435.1 1895541 1896329 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: rpd:RPD_1861 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1895541..1896329) Rhodopseudomonas palustris BisA53 4359474 YP_780632.1 CDS RPE_1703 NC_008435.1 1896496 1897293 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1896496..1897293 Rhodopseudomonas palustris BisA53 4359475 YP_780633.1 CDS RPE_1704 NC_008435.1 1897309 1898301 D PFAM: aminoglycoside phosphotransferase; KEGG: rpd:RPD_1863 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 1897309..1898301 Rhodopseudomonas palustris BisA53 4359476 YP_780634.1 CDS RPE_1705 NC_008435.1 1898317 1898709 D KEGG: rpb:RPB_3603 hypothetical protein; hypothetical protein 1898317..1898709 Rhodopseudomonas palustris BisA53 4359477 YP_780635.1 CDS RPE_1706 NC_008435.1 1898887 1899372 R PFAM: Redoxin domain protein; KEGG: rpc:RPC_4075 peroxiredoxin-like protein; redoxin domain-containing protein complement(1898887..1899372) Rhodopseudomonas palustris BisA53 4359478 YP_780636.1 CDS RPE_1707 NC_008435.1 1899548 1901239 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(1899548..1901239) Rhodopseudomonas palustris BisA53 4359479 YP_780637.1 CDS RPE_1708 NC_008435.1 1901493 1902650 R PFAM: beta-lactamase; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: rpc:RPC_4073 serine-type D-Ala-D-Ala carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase complement(1901493..1902650) Rhodopseudomonas palustris BisA53 4359480 YP_780638.1 CDS RPE_1709 NC_008435.1 1903178 1904986 R responsible for transport of beta-1,2-glucans from the cytoplasm to periplasm; inner membrane ABC transporter permease component; Cgt; ChvA; NdvA; cyclic beta-1,2-glucan ABc transporter complement(1903178..1904986) Rhodopseudomonas palustris BisA53 4359481 YP_780639.1 CDS RPE_1710 NC_008435.1 1905328 1905720 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: rpc:RPC_4071 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 1905328..1905720 Rhodopseudomonas palustris BisA53 4359482 YP_780640.1 CDS RPE_1711 NC_008435.1 1905717 1906334 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1905717..1906334 Rhodopseudomonas palustris BisA53 4359483 YP_780641.1 CDS RPE_1712 NC_008435.1 1906331 1908076 D NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D 1906331..1908076 Rhodopseudomonas palustris BisA53 4359484 YP_780642.1 CDS RPE_1713 NC_008435.1 1908073 1908546 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 1908073..1908546 Rhodopseudomonas palustris BisA53 4359485 YP_780643.1 CDS RPE_1714 NC_008435.1 1908543 1909829 D PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: rpc:RPC_4067 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 1908543..1909829 Rhodopseudomonas palustris BisA53 4359486 YP_780644.1 CDS RPE_1715 NC_008435.1 1909826 1912441 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 1909826..1912441 Rhodopseudomonas palustris BisA53 4359837 YP_780645.1 CDS RPE_1716 NC_008435.1 1912438 1913397 D PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: rpc:RPC_4065 respiratory-chain NADH dehydrogenase, subunit 1; respiratory-chain NADH dehydrogenase subunit 1 1912438..1913397 Rhodopseudomonas palustris BisA53 4359838 YP_780646.1 CDS RPE_1717 NC_008435.1 1913394 1913915 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1913394..1913915 Rhodopseudomonas palustris BisA53 4359839 YP_780647.1 CDS RPE_1718 NC_008435.1 1913912 1914412 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: rpc:RPC_4063 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 1913912..1914412 Rhodopseudomonas palustris BisA53 4359840 YP_780648.1 CDS RPE_1719 NC_008435.1 1914409 1914717 D PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: rpc:RPC_4062 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase subunit 4L 1914409..1914717 Rhodopseudomonas palustris BisA53 4359841 YP_780649.1 CDS RPE_1720 NC_008435.1 1914714 1916681 D KEGG: rpc:RPC_4061 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L 1914714..1916681 Rhodopseudomonas palustris BisA53 4359842 YP_780650.1 CDS RPE_1721 NC_008435.1 1916672 1918114 D KEGG: rpc:RPC_4060 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 1916672..1918114 Rhodopseudomonas palustris BisA53 4359843 YP_780651.1 CDS RPE_1722 NC_008435.1 1918111 1919481 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rpc:RPC_4059 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 1918111..1919481 Rhodopseudomonas palustris BisA53 4359844 YP_780652.1 CDS RPE_1723 NC_008435.1 1919742 1921049 R KEGG: rpb:RPB_1360 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase complement(1919742..1921049) Rhodopseudomonas palustris BisA53 4359845 YP_780653.1 CDS fixK NC_008435.1 1921379 1922068 R transcriptional regulator that positively regulated fixLJ operon; upregulated transcription by FixJ; part of global network that controls expression of aerobic respiratory terminal oxidases and carbon and nitrogen metabolic enzymes; transcriptional regulator FixK complement(1921379..1922068) Rhodopseudomonas palustris BisA53 4359846 YP_780654.1 CDS RPE_1725 NC_008435.1 1922195 1922611 R PFAM: response regulator receiver; KEGG: rpc:RPC_4054 response regulator receiver domain protein (CheY-like); response regulator receiver protein complement(1922195..1922611) Rhodopseudomonas palustris BisA53 4359847 YP_780655.1 CDS fixJ NC_008435.1 1922691 1923308 R response regulator for histidine kinase FixL; part of global network that controls expression of aerobic respiratory terminal oxidases and carbon and nitrogen metabolic enzymes; response regulator FixJ complement(1922691..1923308) Rhodopseudomonas palustris BisA53 4359848 YP_780656.1 CDS RPE_1727 NC_008435.1 1923298 1924833 R KEGG: rpc:RPC_4052 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase complement(1923298..1924833) Rhodopseudomonas palustris BisA53 4359849 YP_780657.1 CDS RPE_1728 NC_008435.1 1924972 1925700 R PFAM: CBS domain containing protein; transport-associated; KEGG: rpc:RPC_4051 putative signal-transduction protein with CBS domains; signal-transduction protein complement(1924972..1925700) Rhodopseudomonas palustris BisA53 4359850 YP_780658.1 CDS RPE_1729 NC_008435.1 1925822 1926655 R PFAM: UspA domain protein; KEGG: rpc:RPC_4050 UspA; UspA domain-containing protein complement(1925822..1926655) Rhodopseudomonas palustris BisA53 4359851 YP_780659.1 CDS RPE_1730 NC_008435.1 1926803 1927684 D PFAM: UspA domain protein; KEGG: rpc:RPC_4049 hypothetical protein; UspA domain-containing protein 1926803..1927684 Rhodopseudomonas palustris BisA53 4359852 YP_780660.1 CDS RPE_1731 NC_008435.1 1927694 1929487 D PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: rpc:RPC_4048 poly-beta-hydroxybutyrate polymerase-like; poly-beta-hydroxybutyrate polymerase domain-containing protein 1927694..1929487 Rhodopseudomonas palustris BisA53 4359853 YP_780661.1 CDS RPE_1732 NC_008435.1 1929497 1931011 R KEGG: rpc:RPC_4047 hypothetical protein; hypothetical protein complement(1929497..1931011) Rhodopseudomonas palustris BisA53 4359854 YP_780662.1 CDS RPE_1733 NC_008435.1 1931317 1931706 D PFAM: CBS domain containing protein; KEGG: rpc:RPC_4046 CBS domain containing membrane protein; hypothetical protein 1931317..1931706 Rhodopseudomonas palustris BisA53 4359855 YP_780663.1 CDS RPE_1734 NC_008435.1 1931878 1934586 D PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: rpc:RPC_4045 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1931878..1934586 Rhodopseudomonas palustris BisA53 4359856 YP_780664.1 CDS RPE_1735 NC_008435.1 1934962 1935531 R KEGG: rpc:RPC_3181 hypothetical protein; hypothetical protein complement(1934962..1935531) Rhodopseudomonas palustris BisA53 4359857 YP_780665.1 CDS RPE_1736 NC_008435.1 1935638 1936072 R KEGG: rpc:RPC_4044 hypothetical protein; hypothetical protein complement(1935638..1936072) Rhodopseudomonas palustris BisA53 4359858 YP_780666.1 CDS RPE_1737 NC_008435.1 1936253 1937401 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; protein of unknown function DUF140; KEGG: rpc:RPC_4043 protein of unknown function DUF140; hypothetical protein 1936253..1937401 Rhodopseudomonas palustris BisA53 4359859 YP_780667.1 CDS RPE_1738 NC_008435.1 1937404 1938177 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_4042 ABC transporter related; ABC transporter-like protein 1937404..1938177 Rhodopseudomonas palustris BisA53 4359860 YP_780668.1 CDS RPE_1739 NC_008435.1 1938183 1939337 D PFAM: Mammalian cell entry related domain protein; KEGG: rpc:RPC_4041 mammalian cell entry related; hypothetical protein 1938183..1939337 Rhodopseudomonas palustris BisA53 4359861 YP_780669.1 CDS RPE_1740 NC_008435.1 1939338 1939691 R PFAM: cytochrome c, class I; KEGG: rpc:RPC_4040 hypothetical protein; cytochrome c, class I complement(1939338..1939691) Rhodopseudomonas palustris BisA53 4359862 YP_780670.1 CDS RPE_1741 NC_008435.1 1939859 1940578 D PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rpc:RPC_4039 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator 1939859..1940578 Rhodopseudomonas palustris BisA53 4359863 YP_780671.1 CDS RPE_1742 NC_008435.1 1940625 1941851 D PFAM: cyclic nucleotide-binding; Ion transport protein; Ion transport 2 domain protein,; KEGG: rpc:RPC_4038 cyclic nucleotide-binding domain (cNMP-BD) protein; cyclic nucleotide-binding protein 1940625..1941851 Rhodopseudomonas palustris BisA53 4359864 YP_780672.1 CDS RPE_1744 NC_008435.1 1942245 1942514 R KEGG: rpa:RPA4230 hypothetical protein; hypothetical protein complement(1942245..1942514) Rhodopseudomonas palustris BisA53 4359866 YP_780673.1 CDS RPE_1745 NC_008435.1 1942929 1943312 R KEGG: rpc:RPC_4034 hypothetical protein; hypothetical protein complement(1942929..1943312) Rhodopseudomonas palustris BisA53 4359867 YP_780674.1 CDS RPE_1746 NC_008435.1 1943407 1943646 D KEGG: rpb:RPB_1383 hypothetical protein; hypothetical protein 1943407..1943646 Rhodopseudomonas palustris BisA53 4359868 YP_780675.1 CDS RPE_1747 NC_008435.1 1943922 1944554 D TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein, P47K; KEGG: rpc:RPC_4032 urease accessory protein UreG; urease accessory protein UreG 1943922..1944554 Rhodopseudomonas palustris BisA53 4359869 YP_780676.1 CDS RPE_1748 NC_008435.1 1944761 1946416 D PFAM: HWE histidine kinase; KEGG: rpc:RPC_4031 signal transduction histidine kinase; signal transduction histidine kinase 1944761..1946416 Rhodopseudomonas palustris BisA53 4359870 YP_780677.1 CDS RPE_1749 NC_008435.1 1946718 1947266 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(1946718..1947266) Rhodopseudomonas palustris BisA53 4359871 YP_780678.1 CDS RPE_1750 NC_008435.1 1947266 1947475 R KEGG: rpc:RPC_4029 hypothetical protein; hypothetical protein complement(1947266..1947475) Rhodopseudomonas palustris BisA53 4358505 YP_780679.1 CDS RPE_1751 NC_008435.1 1947677 1948483 D in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media; two-component response regulator 1947677..1948483 Rhodopseudomonas palustris BisA53 4358506 YP_780680.1 CDS RPE_1752 NC_008435.1 1948860 1949321 D KEGG: rpb:RPB_1389 hypothetical protein; hypothetical protein 1948860..1949321 Rhodopseudomonas palustris BisA53 4358507 YP_780681.1 CDS RPE_1753 NC_008435.1 1950956 1952194 R PFAM: protein of unknown function UPF0118; KEGG: rpc:RPC_4026 protein of unknown function UPF0118; hypothetical protein complement(1950956..1952194) Rhodopseudomonas palustris BisA53 4358508 YP_780682.1 CDS RPE_1754 NC_008435.1 1952282 1953061 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpc:RPC_4025 ErfK/YbiS/YcfS/YnhG; hypothetical protein 1952282..1953061 Rhodopseudomonas palustris BisA53 4358509 YP_780683.1 CDS RPE_1755 NC_008435.1 1953083 1953730 D KEGG: rpc:RPC_4024 hypothetical protein; hypothetical protein 1953083..1953730 Rhodopseudomonas palustris BisA53 4358510 YP_780684.1 CDS RPE_1756 NC_008435.1 1953834 1953995 D KEGG: rpa:RPA4218 hypothetical protein; hypothetical protein 1953834..1953995 Rhodopseudomonas palustris BisA53 4358511 YP_780685.1 CDS RPE_1757 NC_008435.1 1954061 1956223 R catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G complement(1954061..1956223) Rhodopseudomonas palustris BisA53 4358512 YP_780686.1 CDS RPE_1758 NC_008435.1 1956360 1957226 R TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_1396 sulfate ABC transporter, permease protein CysW; sulfate ABC transporter permease complement(1956360..1957226) Rhodopseudomonas palustris BisA53 4358513 YP_780687.1 CDS RPE_1759 NC_008435.1 1957226 1958053 R TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_4019 sulfate ABC transporter, permease protein CysT; sulfate ABC transporter permease complement(1957226..1958053) Rhodopseudomonas palustris BisA53 4358514 YP_780688.1 CDS RPE_1760 NC_008435.1 1958406 1959413 R TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: rpd:RPD_1378 thiosulphate-binding protein; sulfate ABC transporter periplasmic sulfate-binding protein complement(1958406..1959413) Rhodopseudomonas palustris BisA53 4358515 YP_780689.1 CDS RPE_1761 NC_008435.1 1959442 1961355 R Adenylyl-sulfate kinase; PFAM: protein synthesis factor, GTP-binding; adenylylsulfate kinase; elongation factor Tu, domain 2 protein; KEGG: rpc:RPC_4017 sulfate adenylyltransferase, large subunit; sulfate adenylyltransferase complement(1959442..1961355) Rhodopseudomonas palustris BisA53 4358516 YP_780690.1 CDS RPE_1762 NC_008435.1 1961364 1962254 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(1961364..1962254) Rhodopseudomonas palustris BisA53 4358517 YP_780691.1 CDS RPE_1763 NC_008435.1 1962398 1963819 D TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rpc:RPC_4015 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 1962398..1963819 Rhodopseudomonas palustris BisA53 4358518 YP_780692.1 CDS RPE_1764 NC_008435.1 1963816 1964130 D KEGG: rpc:RPC_4014 hypothetical protein; hypothetical protein 1963816..1964130 Rhodopseudomonas palustris BisA53 4358519 YP_780693.1 CDS RPE_1765 NC_008435.1 1964141 1965796 D PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: rpc:RPC_4013 nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta subunit 1964141..1965796 Rhodopseudomonas palustris BisA53 4358520 YP_780694.1 CDS RPE_1766 NC_008435.1 1965783 1966301 D PFAM: Uncharacterised conserved protein UCP030820; KEGG: rpc:RPC_4012 uncharacterised conserved protein UCP030820; hypothetical protein 1965783..1966301 Rhodopseudomonas palustris BisA53 4358521 YP_780695.1 CDS RPE_1767 NC_008435.1 1966298 1967032 D catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 1966298..1967032 Rhodopseudomonas palustris BisA53 4358522 YP_780696.1 CDS RPE_1768 NC_008435.1 1967150 1968139 D TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: rpc:RPC_4010 thiosulphate-binding protein; thiosulfate-binding protein 1967150..1968139 Rhodopseudomonas palustris BisA53 4358523 YP_780697.1 CDS RPE_1769 NC_008435.1 1968392 1969228 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_4009 sulfate ABC transporter, permease protein CysT; sulfate ABC transporter permease 1968392..1969228 Rhodopseudomonas palustris BisA53 4358524 YP_780698.1 CDS RPE_1770 NC_008435.1 1969232 1970134 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_4008 sulfate ABC transporter, permease protein CysW; sulfate ABC transporter inner membrane subunit CysW 1969232..1970134 Rhodopseudomonas palustris BisA53 4358525 YP_780699.1 CDS RPE_1771 NC_008435.1 1970124 1971173 D KEGG: rpc:RPC_4007 sulphate transport system permease protein 1; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; sulfate transport system permease 1 1970124..1971173 Rhodopseudomonas palustris BisA53 4358526 YP_780700.1 CDS RPE_1772 NC_008435.1 1971268 1971774 D PFAM: Allergen V5/Tpx-1 family protein; KEGG: rpc:RPC_4004 allergen V5/TPX-1 related; allergen V5/Tpx-1-like protein 1971268..1971774 Rhodopseudomonas palustris BisA53 4358527 YP_780701.1 CDS RPE_1773 NC_008435.1 1971930 1972718 D TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpc:RPC_4002 3-hydroxybutyrate dehydrogenase; 3-hydroxybutyrate dehydrogenase 1971930..1972718 Rhodopseudomonas palustris BisA53 4358528 YP_780702.1 CDS RPE_1774 NC_008435.1 1972900 1973985 D KEGG: ccr:CC2989 hypothetical protein; hypothetical protein 1972900..1973985 Rhodopseudomonas palustris BisA53 4358529 YP_780703.1 CDS RPE_1775 NC_008435.1 1974001 1974261 R KEGG: ccr:CC0488 conserved hypothetical protein; hypothetical protein complement(1974001..1974261) Rhodopseudomonas palustris BisA53 4358530 YP_780704.1 CDS RPE_1776 NC_008435.1 1974230 1974535 R PFAM: protein of unknown function DUF497; KEGG: syn:sll1651 hypothetical protein; hypothetical protein complement(1974230..1974535) Rhodopseudomonas palustris BisA53 4358531 YP_780705.1 CDS RPE_1777 NC_008435.1 1974679 1974897 R hypothetical protein complement(1974679..1974897) Rhodopseudomonas palustris BisA53 4358532 YP_780706.1 CDS RPE_1778 NC_008435.1 1975035 1975790 D PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rpa:RPA0992 probable transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator 1975035..1975790 Rhodopseudomonas palustris BisA53 4358533 YP_780707.1 CDS RPE_1779 NC_008435.1 1977399 1978562 D PFAM: peptidase C14, caspase catalytic subunit p20; KEGG: rpd:RPD_1719 peptidase C14, caspase catalytic subunit P20; peptidase C14, caspase catalytic subunit p20 1977399..1978562 Rhodopseudomonas palustris BisA53 4358534 YP_780708.1 CDS RPE_1780 NC_008435.1 1978660 1980237 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(1978660..1980237) Rhodopseudomonas palustris BisA53 4358535 YP_780709.1 CDS RPE_1781 NC_008435.1 1980655 1981527 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpb:RPB_3599 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1980655..1981527) Rhodopseudomonas palustris BisA53 4358536 YP_780710.1 CDS RPE_1782 NC_008435.1 1981630 1982442 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1981630..1982442 Rhodopseudomonas palustris BisA53 4358537 YP_780711.1 CDS RPE_1783 NC_008435.1 1982559 1984103 D activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 1982559..1984103 Rhodopseudomonas palustris BisA53 4358538 YP_780712.1 CDS RPE_1784 NC_008435.1 1984104 1984994 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_1679 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1984104..1984994) Rhodopseudomonas palustris BisA53 4358539 YP_780713.1 CDS RPE_1785 NC_008435.1 1984999 1986087 R PFAM: conserved hypothetical protein 698; KEGG: rpc:RPC_1680 conserved hypothetical protein 698; hypothetical protein complement(1984999..1986087) Rhodopseudomonas palustris BisA53 4358364 YP_780714.1 CDS RPE_1786 NC_008435.1 1986218 1989013 R TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: rpc:RPC_1681 multi-sensor hybrid histidine kinase; multi-sensor hybrid histidine kinase complement(1986218..1989013) Rhodopseudomonas palustris BisA53 4358365 YP_780715.1 CDS RPE_1787 NC_008435.1 1989251 1989508 R KEGG: rpc:RPC_1682 hypothetical protein; hypothetical protein complement(1989251..1989508) Rhodopseudomonas palustris BisA53 4358366 YP_780716.1 CDS RPE_1788 NC_008435.1 1989679 1989960 D PFAM: type IV pilus assembly PilZ; KEGG: rpd:RPD_2833 type IV pilus assembly PilZ; type IV pilus assembly PilZ 1989679..1989960 Rhodopseudomonas palustris BisA53 4358367 YP_780717.1 CDS RPE_1789 NC_008435.1 1990000 1991046 R KEGG: bja:bll4192 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase complement(1990000..1991046) Rhodopseudomonas palustris BisA53 4358368 YP_780718.1 CDS RPE_1790 NC_008435.1 1991353 1993497 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rpd:RPD_0706 FAD dependent oxidoreductase; amine oxidase 1991353..1993497 Rhodopseudomonas palustris BisA53 4358369 YP_780719.1 CDS RPE_1791 NC_008435.1 1993634 1996417 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 1993634..1996417 Rhodopseudomonas palustris BisA53 4358370 YP_780720.1 CDS RPE_1792 NC_008435.1 1996794 1998134 D PFAM: OmpA/MotB domain protein; KEGG: rpb:RPB_3590 OmpA/MotB; OmpA/MotB domain-containing protein 1996794..1998134 Rhodopseudomonas palustris BisA53 4358371 YP_780721.1 CDS RPE_1793 NC_008435.1 1998350 1999318 R PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpd:RPD_1878 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1998350..1999318) Rhodopseudomonas palustris BisA53 4358372 YP_780722.1 CDS RPE_1794 NC_008435.1 1999484 2000623 R KEGG: rpa:RPA1776 possible lipid transfer protein; putative lipid transfer protein complement(1999484..2000623) Rhodopseudomonas palustris BisA53 4358373 YP_780723.1 CDS RPE_1795 NC_008435.1 2000628 2001041 R PFAM: protein of unknown function DUF35; KEGG: bja:bll2959 hypothetical protein; hypothetical protein complement(2000628..2001041) Rhodopseudomonas palustris BisA53 4358374 YP_780724.1 CDS RPE_1796 NC_008435.1 2001517 2002866 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 2001517..2002866 Rhodopseudomonas palustris BisA53 4358375 YP_780725.1 CDS RPE_1797 NC_008435.1 2002859 2003545 D KEGG: rpd:RPD_1882 hypothetical protein; hypothetical protein 2002859..2003545 Rhodopseudomonas palustris BisA53 4358376 YP_780726.1 CDS RPE_1798 NC_008435.1 2003601 2004824 D KEGG: bja:blr2964 hypothetical protein; hypothetical protein 2003601..2004824 Rhodopseudomonas palustris BisA53 4358377 YP_780727.1 CDS RPE_1799 NC_008435.1 2004902 2005123 R KEGG: rpb:RPB_1412 hypothetical protein; hypothetical protein complement(2004902..2005123) Rhodopseudomonas palustris BisA53 4358378 YP_780728.1 CDS RPE_1800 NC_008435.1 2005264 2005593 R KEGG: rpc:RPC_1692 hypothetical protein; hypothetical protein complement(2005264..2005593) Rhodopseudomonas palustris BisA53 4358379 YP_780729.1 CDS RPE_1801 NC_008435.1 2005932 2007554 R PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rpd:RPD_3594 thiamine pyrophosphate enzyme-like TPP-binding; hypothetical protein complement(2005932..2007554) Rhodopseudomonas palustris BisA53 4358380 YP_780730.1 CDS RPE_1802 NC_008435.1 2007725 2008504 D PFAM: HpcH/HpaI aldolase; KEGG: rpa:RPA3755 putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; HpcH/HpaI aldolase 2007725..2008504 Rhodopseudomonas palustris BisA53 4358381 YP_780731.1 CDS RPE_1803 NC_008435.1 2008727 2009191 D KEGG: rpc:RPC_1708 cache, type 2; hypothetical protein 2008727..2009191 Rhodopseudomonas palustris BisA53 4358382 YP_780732.1 CDS RPE_1804 NC_008435.1 2009241 2010950 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_1709 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2009241..2010950 Rhodopseudomonas palustris BisA53 4358383 YP_780733.1 CDS RPE_1805 NC_008435.1 2011017 2012405 D PFAM: Ethanolamine ammonia lyase large subunit; KEGG: rpc:RPC_1711 ethanolamine ammonia lyase large subunit; ethanolamine ammonia lyase large subunit 2011017..2012405 Rhodopseudomonas palustris BisA53 4358384 YP_780734.1 CDS RPE_1806 NC_008435.1 2012647 2014233 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rpc:RPC_1712 radical SAM; radical SAM domain-containing protein 2012647..2014233 Rhodopseudomonas palustris BisA53 4358385 YP_780735.1 CDS RPE_1807 NC_008435.1 2014244 2015029 D catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 2014244..2015029 Rhodopseudomonas palustris BisA53 4358386 YP_780736.1 CDS RPE_1808 NC_008435.1 2015220 2017589 D KEGG: rpc:RPC_1714 putative RND superfamily transporter; RND superfamily transporter 2015220..2017589 Rhodopseudomonas palustris BisA53 4358387 YP_780737.1 CDS RPE_1809 NC_008435.1 2017668 2018168 R KEGG: rpc:RPC_1715 hypothetical protein; hypothetical protein complement(2017668..2018168) Rhodopseudomonas palustris BisA53 4358388 YP_780738.1 CDS RPE_1810 NC_008435.1 2018737 2018976 D KEGG: rpc:RPC_1716 hypothetical protein; hypothetical protein 2018737..2018976 Rhodopseudomonas palustris BisA53 4358389 YP_780739.1 CDS RPE_1811 NC_008435.1 2019130 2020035 D PFAM: Squalene/phytoene synthase; KEGG: rpc:RPC_1717 squalene/phytoene synthase; squalene/phytoene synthase 2019130..2020035 Rhodopseudomonas palustris BisA53 4358390 YP_780740.1 CDS RPE_1812 NC_008435.1 2020032 2020871 D PFAM: Squalene/phytoene synthase; KEGG: rpc:RPC_1718 squalene/phytoene synthase; squalene/phytoene synthase 2020032..2020871 Rhodopseudomonas palustris BisA53 4358391 YP_780741.1 CDS RPE_1813 NC_008435.1 2020871 2022124 D PFAM: amine oxidase; KEGG: rpc:RPC_1719 amine oxidase; amine oxidase 2020871..2022124 Rhodopseudomonas palustris BisA53 4358392 YP_780742.1 CDS RPE_1814 NC_008435.1 2022346 2023080 D PFAM: purine and other phosphorylases, family 1; KEGG: rpc:RPC_1721 hypothetical protein; hypothetical protein 2022346..2023080 Rhodopseudomonas palustris BisA53 4358393 YP_780743.1 CDS RPE_1815 NC_008435.1 2023021 2024169 R PFAM: Radical SAM domain protein; KEGG: rpc:RPC_1725 radical SAM; radical SAM domain-containing protein complement(2023021..2024169) Rhodopseudomonas palustris BisA53 4358394 YP_780744.1 CDS ispH NC_008435.1 2024221 2025165 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(2024221..2025165) Rhodopseudomonas palustris BisA53 4358395 YP_780745.1 CDS RPE_1817 NC_008435.1 2025465 2028053 D KEGG: rpc:RPC_1727 hypothetical protein; hypothetical protein 2025465..2028053 Rhodopseudomonas palustris BisA53 4358396 YP_780746.1 CDS RPE_1818 NC_008435.1 2028021 2028605 R KEGG: bja:bll3009 hypothetical protein; hypothetical protein complement(2028021..2028605) Rhodopseudomonas palustris BisA53 4358397 YP_780747.1 CDS RPE_1819 NC_008435.1 2028758 2030149 D PFAM: aminotransferase class-III; KEGG: rpc:RPC_1728 aminotransferase class-III; class III aminotransferase 2028758..2030149 Rhodopseudomonas palustris BisA53 4358398 YP_780748.1 CDS RPE_1820 NC_008435.1 2030599 2032218 R PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: rpb:RPB_1733 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase complement(2030599..2032218) Rhodopseudomonas palustris BisA53 4359261 YP_780749.1 CDS RPE_1821 NC_008435.1 2032382 2033554 D KEGG: rpc:RPC_1729 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; peptidase M20D, amidohydrolase 2032382..2033554 Rhodopseudomonas palustris BisA53 4359262 YP_780750.1 CDS RPE_1822 NC_008435.1 2033660 2034157 D PFAM: protein of unknown function DUF892; KEGG: rpc:RPC_1730 protein of unknown function DUF892; hypothetical protein 2033660..2034157 Rhodopseudomonas palustris BisA53 4359263 YP_780751.1 CDS RPE_1823 NC_008435.1 2034606 2036048 R TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: rpd:RPD_1899 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-like protein complement(2034606..2036048) Rhodopseudomonas palustris BisA53 4359264 YP_780752.1 CDS RPE_1824 NC_008435.1 2036150 2037388 R PFAM: Radical SAM domain protein; KEGG: rpd:RPD_1900 radical SAM; radical SAM domain-containing protein complement(2036150..2037388) Rhodopseudomonas palustris BisA53 4359265 YP_780753.1 CDS RPE_1825 NC_008435.1 2037555 2038337 D KEGG: rpb:RPB_3565 hypothetical protein; hypothetical protein 2037555..2038337 Rhodopseudomonas palustris BisA53 4359266 YP_780754.1 CDS RPE_1826 NC_008435.1 2038387 2039823 D KEGG: rpb:RPB_3564 hypothetical protein; hypothetical protein 2038387..2039823 Rhodopseudomonas palustris BisA53 4359267 YP_780755.1 CDS dnaE2 NC_008435.1 2039930 2043391 D DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; error-prone DNA polymerase 2039930..2043391 Rhodopseudomonas palustris BisA53 4359268 YP_780756.1 CDS RPE_1828 NC_008435.1 2043421 2043885 R PFAM: GCN5-related N-acetyltransferase; KEGG: nar:Saro_0459 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2043421..2043885) Rhodopseudomonas palustris BisA53 4359269 YP_780757.1 CDS RPE_1829 NC_008435.1 2044084 2044926 D KEGG: nmu:Nmul_A2382 PDZ/DHR/GLGF; hypothetical protein 2044084..2044926 Rhodopseudomonas palustris BisA53 4359270 YP_780758.1 CDS RPE_1830 NC_008435.1 2045019 2045306 R TIGRFAM: putative addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: rru:Rru_A3537 predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain; CopG/Arc/MetJ family transcriptional regulator complement(2045019..2045306) Rhodopseudomonas palustris BisA53 4359271 YP_780759.1 CDS RPE_1831 NC_008435.1 2045344 2045886 R KEGG: syn:slr0668 hypothetical protein; hypothetical protein complement(2045344..2045886) Rhodopseudomonas palustris BisA53 4359272 YP_780760.1 CDS RPE_1832 NC_008435.1 2045879 2046409 R KEGG: syn:slr0667 hypothetical protein; hypothetical protein complement(2045879..2046409) Rhodopseudomonas palustris BisA53 4359273 YP_780761.1 CDS RPE_1833 NC_008435.1 2046911 2047327 D hypothetical protein 2046911..2047327 Rhodopseudomonas palustris BisA53 4359274 YP_780762.1 CDS RPE_1834 NC_008435.1 2047420 2049771 R KEGG: rpc:RPC_1734 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(2047420..2049771) Rhodopseudomonas palustris BisA53 4359275 YP_780763.1 CDS RPE_1835 NC_008435.1 2050069 2050395 D KEGG: rpc:RPC_1736 hypothetical protein; hypothetical protein 2050069..2050395 Rhodopseudomonas palustris BisA53 4359276 YP_780764.1 CDS RPE_1836 NC_008435.1 2050524 2051303 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpc:RPC_1738 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(2050524..2051303) Rhodopseudomonas palustris BisA53 4359277 YP_780765.1 CDS RPE_1837 NC_008435.1 2051409 2052068 R KEGG: rpa:RPA1812 hypothetical protein; hypothetical protein complement(2051409..2052068) Rhodopseudomonas palustris BisA53 4359278 YP_780766.1 CDS RPE_1838 NC_008435.1 2052226 2053362 R KEGG: rpc:RPC_1744 hypothetical protein; hypothetical protein complement(2052226..2053362) Rhodopseudomonas palustris BisA53 4359279 YP_780767.1 CDS RPE_1839 NC_008435.1 2053359 2054459 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_1745 diguanylate cyclase (GGDEF domain); diguanylate cyclase complement(2053359..2054459) Rhodopseudomonas palustris BisA53 4359280 YP_780768.1 CDS RPE_1840 NC_008435.1 2054890 2055456 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 2054890..2055456 Rhodopseudomonas palustris BisA53 4359281 YP_780769.1 CDS RPE_1841 NC_008435.1 2055453 2056256 D KEGG: rpd:RPD_1916 hypothetical protein; hypothetical protein 2055453..2056256 Rhodopseudomonas palustris BisA53 4359282 YP_780770.1 CDS RPE_1842 NC_008435.1 2056749 2057219 D KEGG: rpc:RPC_1747 hypothetical protein; hypothetical protein 2056749..2057219 Rhodopseudomonas palustris BisA53 4359283 YP_780771.1 CDS RPE_1843 NC_008435.1 2057229 2058593 R TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpc:RPC_1748 twin-arginine translocation pathway signal; hypothetical protein complement(2057229..2058593) Rhodopseudomonas palustris BisA53 4359284 YP_780772.1 CDS RPE_1844 NC_008435.1 2058713 2058958 R KEGG: rpc:RPC_1752 hypothetical protein; hypothetical protein complement(2058713..2058958) Rhodopseudomonas palustris BisA53 4359285 YP_780773.1 CDS RPE_1845 NC_008435.1 2059033 2059692 R PFAM: peptidase C15, pyroglutamyl peptidase I; KEGG: rpc:RPC_1753 peptidase C15, pyroglutamyl peptidase I; peptidase C15, pyroglutamyl peptidase I complement(2059033..2059692) Rhodopseudomonas palustris BisA53 4359286 YP_780774.1 CDS RPE_1846 NC_008435.1 2059689 2060675 R functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transport system ATPase complement(2059689..2060675) Rhodopseudomonas palustris BisA53 4359287 YP_780775.1 CDS RPE_1847 NC_008435.1 2060672 2061457 R KEGG: rpc:RPC_1755 hypothetical protein; hypothetical protein complement(2060672..2061457) Rhodopseudomonas palustris BisA53 4359288 YP_780776.1 CDS RPE_1848 NC_008435.1 2061505 2061849 R PFAM: protein of unknown function DUF86; KEGG: rpc:RPC_1756 protein of unknown function DUF86; hypothetical protein complement(2061505..2061849) Rhodopseudomonas palustris BisA53 4359289 YP_780777.1 CDS RPE_1849 NC_008435.1 2061851 2062168 R PFAM: DNA polymerase, beta domain protein region; KEGG: rpc:RPC_1757 DNA polymerase, beta-like region; DNA polymerase subunit beta complement(2061851..2062168) Rhodopseudomonas palustris BisA53 4359290 YP_780778.1 CDS RPE_1850 NC_008435.1 2062627 2063157 R hypothetical protein complement(2062627..2063157) Rhodopseudomonas palustris BisA53 4359291 YP_780779.1 CDS RPE_1851 NC_008435.1 2063287 2063562 R TIGRFAM: prevent-host-death family protein; KEGG: rpc:RPC_1759 prevent-host-death protein; prevent-host-death family protein complement(2063287..2063562) Rhodopseudomonas palustris BisA53 4359292 YP_780780.1 CDS RPE_1852 NC_008435.1 2063567 2065723 R MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase complement(2063567..2065723) Rhodopseudomonas palustris BisA53 4359293 YP_780781.1 CDS RPE_1853 NC_008435.1 2065781 2066245 R PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: rpc:RPC_1761 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein complement(2065781..2066245) Rhodopseudomonas palustris BisA53 4359294 YP_780782.1 CDS RPE_1854 NC_008435.1 2066242 2068113 R PFAM: methylmalonyl-CoA mutase; KEGG: rpc:RPC_1762 methylmalonyl-CoA mutase; methylmalonyl-CoA mutase complement(2066242..2068113) Rhodopseudomonas palustris BisA53 4359295 YP_780783.1 CDS RPE_1855 NC_008435.1 2068212 2068703 R KEGG: rpc:RPC_1763 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(2068212..2068703) Rhodopseudomonas palustris BisA53 4360047 YP_780784.1 CDS RPE_1856 NC_008435.1 2068696 2069076 R TIGRFAM: dihydroneopterin aldolase; KEGG: rpb:RPB_3534 dihydroneopterin aldolase; dihydroneopterin aldolase complement(2068696..2069076) Rhodopseudomonas palustris BisA53 4360048 YP_780785.1 CDS RPE_1857 NC_008435.1 2069073 2069930 R KEGG: rpc:RPC_1765 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase complement(2069073..2069930) Rhodopseudomonas palustris BisA53 4360049 YP_780786.1 CDS RPE_1858 NC_008435.1 2070058 2070465 R KEGG: rpc:RPC_1766 hypothetical protein; hypothetical protein complement(2070058..2070465) Rhodopseudomonas palustris BisA53 4360050 YP_780787.1 CDS RPE_1859 NC_008435.1 2070531 2070896 R KEGG: rpc:RPC_1767 hypothetical protein; hypothetical protein complement(2070531..2070896) Rhodopseudomonas palustris BisA53 4360051 YP_780788.1 CDS RPE_1860 NC_008435.1 2071229 2072851 D PFAM: protein of unknown function DUF853, NPT hydrolase putative; KEGG: rpa:RPA1843 hypothetical protein; hypothetical protein 2071229..2072851 Rhodopseudomonas palustris BisA53 4360052 YP_780789.1 CDS RPE_1861 NC_008435.1 2072892 2074295 D PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rpd:RPD_1937 peptidase M20; hypothetical protein 2072892..2074295 Rhodopseudomonas palustris BisA53 4360053 YP_780790.1 CDS RPE_1862 NC_008435.1 2074418 2076412 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_2457 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2074418..2076412) Rhodopseudomonas palustris BisA53 4360054 YP_780791.1 CDS RPE_1863 NC_008435.1 2076741 2078144 R PFAM: chemotaxis sensory transducer; KEGG: rpb:RPB_3522 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2076741..2078144) Rhodopseudomonas palustris BisA53 4360055 YP_780792.1 CDS RPE_1864 NC_008435.1 2078453 2078593 R KEGG: bja:bll3066 hypothetical protein; hypothetical protein complement(2078453..2078593) Rhodopseudomonas palustris BisA53 4360056 YP_780793.1 CDS RPE_1865 NC_008435.1 2078647 2079501 R PFAM: beta-lactamase; KEGG: bja:bll0941 beta-lactamase L2 precursor; Beta-lactamase complement(2078647..2079501) Rhodopseudomonas palustris BisA53 4360057 YP_780794.1 CDS RPE_1866 NC_008435.1 2079565 2081214 R KEGG: rpc:RPC_1772 hypothetical protein; hypothetical protein complement(2079565..2081214) Rhodopseudomonas palustris BisA53 4360058 YP_780795.1 CDS RPE_1867 NC_008435.1 2081521 2082471 D KEGG: rpc:RPC_1773 hypothetical protein; hypothetical protein 2081521..2082471 Rhodopseudomonas palustris BisA53 4360059 YP_780796.1 CDS RPE_1868 NC_008435.1 2082682 2083098 D PFAM: ROSMUCR transcriptional regulator; KEGG: rpc:RPC_1774 transcriptional regulator, MucR family; MucR family transcriptional regulator 2082682..2083098 Rhodopseudomonas palustris BisA53 4360060 YP_780797.1 CDS RPE_1869 NC_008435.1 2083352 2084008 D KEGG: rpc:RPC_1776 hypothetical protein; hypothetical protein 2083352..2084008 Rhodopseudomonas palustris BisA53 4360061 YP_780798.1 CDS RPE_1870 NC_008435.1 2084013 2084447 R PFAM: Fe-S metabolism associated SufE; KEGG: rpc:RPC_1777 Fe-S metabolism associated SufE; Fe-S metabolism associated SufE complement(2084013..2084447) Rhodopseudomonas palustris BisA53 4360062 YP_780799.1 CDS RPE_1871 NC_008435.1 2084683 2085117 R KEGG: rpc:RPC_1778 hypothetical protein; hypothetical protein complement(2084683..2085117) Rhodopseudomonas palustris BisA53 4360063 YP_780800.1 CDS RPE_1872 NC_008435.1 2085534 2087381 D KEGG: rpc:RPC_1779 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 2085534..2087381 Rhodopseudomonas palustris BisA53 4360064 YP_780801.1 CDS RPE_1873 NC_008435.1 2087374 2088042 D PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rpc:RPC_1780 peptidoglycan-binding domain 1; peptidoglycan binding domain-containing protein 2087374..2088042 Rhodopseudomonas palustris BisA53 4360065 YP_780802.1 CDS RPE_1874 NC_008435.1 2088080 2088424 D PFAM: protein of unknown function DUF1491; KEGG: rpc:RPC_1781 protein of unknown function DUF1491; hypothetical protein 2088080..2088424 Rhodopseudomonas palustris BisA53 4360066 YP_780803.1 CDS RPE_1875 NC_008435.1 2088421 2089386 R KEGG: rpc:RPC_1782 hypothetical protein; hypothetical protein complement(2088421..2089386) Rhodopseudomonas palustris BisA53 4360067 YP_780804.1 CDS RPE_1876 NC_008435.1 2089533 2089796 R KEGG: rpc:RPC_1783 hypothetical protein; hypothetical protein complement(2089533..2089796) Rhodopseudomonas palustris BisA53 4360068 YP_780805.1 CDS RPE_1877 NC_008435.1 2090230 2091000 D KEGG: rpc:RPC_1784 hypothetical protein; hypothetical protein 2090230..2091000 Rhodopseudomonas palustris BisA53 4360069 YP_780806.1 CDS RPE_1878 NC_008435.1 2091197 2091760 R KEGG: rpc:RPC_1785 hypothetical protein; hypothetical protein complement(2091197..2091760) Rhodopseudomonas palustris BisA53 4360070 YP_780807.1 CDS RPE_1879 NC_008435.1 2091757 2092335 R PFAM: protein of unknown function DUF1214; KEGG: rpc:RPC_1786 protein of unknown function DUF1214; hypothetical protein complement(2091757..2092335) Rhodopseudomonas palustris BisA53 4360071 YP_780808.1 CDS RPE_1880 NC_008435.1 2092370 2094628 R KEGG: rpc:RPC_1787 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; 1A family penicillin-binding protein complement(2092370..2094628) Rhodopseudomonas palustris BisA53 4360072 YP_780809.1 CDS RPE_1881 NC_008435.1 2094954 2095466 D PFAM: protein of unknown function UPF0153; KEGG: bja:blr3103 hypothetical protein; hypothetical protein 2094954..2095466 Rhodopseudomonas palustris BisA53 4360073 YP_780810.1 CDS RPE_1882 NC_008435.1 2095579 2095743 D PFAM: Flp/Fap pilin component; KEGG: rpc:RPC_1796 Flp/Fap pilin component; Flp/Fap pilin component 2095579..2095743 Rhodopseudomonas palustris BisA53 4360074 YP_780811.1 CDS RPE_1883 NC_008435.1 2096435 2098120 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_1795 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2096435..2098120 Rhodopseudomonas palustris BisA53 4360075 YP_780812.1 CDS RPE_1884 NC_008435.1 2098542 2100296 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_3379 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2098542..2100296 Rhodopseudomonas palustris BisA53 4360076 YP_780813.1 CDS RPE_1885 NC_008435.1 2100556 2102259 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: rpc:RPC_3380 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2100556..2102259 Rhodopseudomonas palustris BisA53 4360077 YP_780814.1 CDS RPE_1886 NC_008435.1 2102277 2102678 D hypothetical protein 2102277..2102678 Rhodopseudomonas palustris BisA53 4360078 YP_780815.1 CDS RPE_1887 NC_008435.1 2103027 2104064 D PFAM: helix-turn-helix- domain containing protein, AraC type; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; KEGG: rpc:RPC_1252 transcriptional regulator, AraC family; AraC family transcriptional regulator 2103027..2104064 Rhodopseudomonas palustris BisA53 4360079 YP_780816.1 CDS RPE_1888 NC_008435.1 2104070 2104417 R hypothetical protein complement(2104070..2104417) Rhodopseudomonas palustris BisA53 4360080 YP_780817.1 CDS RPE_1889 NC_008435.1 2104472 2106157 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_1795 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2104472..2106157 Rhodopseudomonas palustris BisA53 4360081 YP_780818.1 CDS RPE_1890 NC_008435.1 2106226 2106744 D hypothetical protein 2106226..2106744 Rhodopseudomonas palustris BisA53 4359906 YP_780819.1 CDS RPE_1891 NC_008435.1 2107081 2107233 D KEGG: rpc:RPC_1798 hypothetical protein; hypothetical protein 2107081..2107233 Rhodopseudomonas palustris BisA53 4359907 YP_780820.1 CDS RPE_1892 NC_008435.1 2107336 2108199 D KEGG: rpc:RPC_1799 hypothetical protein; hypothetical protein 2107336..2108199 Rhodopseudomonas palustris BisA53 4359908 YP_780821.1 CDS RPE_1893 NC_008435.1 2108192 2109463 D PFAM: protein of unknown function DUF264; KEGG: rpc:RPC_1800 protein of unknown function DUF264; hypothetical protein 2108192..2109463 Rhodopseudomonas palustris BisA53 4359909 YP_780822.1 CDS RPE_1894 NC_008435.1 2109637 2109924 R PFAM: Excinuclease ABC, C subunit domain protein; KEGG: rpd:RPD_1965 excinuclease ABC, C subunit-like; excinuclease ABC subunit C complement(2109637..2109924) Rhodopseudomonas palustris BisA53 4359910 YP_780823.1 CDS RPE_1895 NC_008435.1 2110151 2111326 D TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: rpc:RPC_1801 phage portal protein, HK97; HK97 family phage portal protein 2110151..2111326 Rhodopseudomonas palustris BisA53 4359911 YP_780824.1 CDS RPE_1896 NC_008435.1 2111512 2112234 D PFAM: type IV pilus assembly PilZ; KEGG: rpc:RPC_1802 type IV pilus assembly PilZ; type IV pilus assembly PilZ 2111512..2112234 Rhodopseudomonas palustris BisA53 4359912 YP_780825.1 CDS RPE_1897 NC_008435.1 2112281 2112556 D KEGG: rpc:RPC_1803 hypothetical protein; hypothetical protein 2112281..2112556 Rhodopseudomonas palustris BisA53 4359913 YP_780826.1 CDS RPE_1898 NC_008435.1 2113586 2114212 D TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35, phage prohead HK97; KEGG: rpb:RPB_3484 peptidase U35, phage prohead HK97; HK97 family phage prohead protease 2113586..2114212 Rhodopseudomonas palustris BisA53 4359914 YP_780827.1 CDS RPE_1900 NC_008435.1 2115040 2115495 D hypothetical protein 2115040..2115495 Rhodopseudomonas palustris BisA53 4359916 YP_780828.1 CDS RPE_1901 NC_008435.1 2115916 2117013 D PFAM: transposase, IS4 family protein; KEGG: rpc:RPC_2070 transposase, IS4; transposase, IS4 family protein 2115916..2117013 Rhodopseudomonas palustris BisA53 4359917 YP_780829.1 CDS RPE_1902 NC_008435.1 2117083 2117835 D KEGG: rpb:RPB_3488 hypothetical protein; hypothetical protein 2117083..2117835 Rhodopseudomonas palustris BisA53 4359918 YP_780830.1 CDS RPE_1906 NC_008435.1 2120748 2121134 R hypothetical protein complement(2120748..2121134) Rhodopseudomonas palustris BisA53 4359922 YP_780831.1 CDS RPE_1907 NC_008435.1 2121414 2121683 D KEGG: rpb:RPB_3482 hypothetical protein; hypothetical protein 2121414..2121683 Rhodopseudomonas palustris BisA53 4359923 YP_780832.1 CDS RPE_1908 NC_008435.1 2121860 2123185 D TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97; KEGG: nwi:Nwi_1167 phage major capsid protein, HK97; HK97 family phage major capsid protein 2121860..2123185 Rhodopseudomonas palustris BisA53 4359924 YP_780833.1 CDS RPE_1909 NC_008435.1 2123245 2123484 R hypothetical protein complement(2123245..2123484) Rhodopseudomonas palustris BisA53 4359925 YP_780834.1 CDS RPE_1910 NC_008435.1 2123694 2124599 D KEGG: nwi:Nwi_1168 hypothetical protein; hypothetical protein 2123694..2124599 Rhodopseudomonas palustris BisA53 4359926 YP_780835.1 CDS RPE_1911 NC_008435.1 2124596 2124985 D KEGG: rpc:RPC_1809 hypothetical protein; hypothetical protein 2124596..2124985 Rhodopseudomonas palustris BisA53 4359927 YP_780836.1 CDS RPE_1912 NC_008435.1 2125079 2125360 R KEGG: rpc:RPC_1810 hypothetical protein; hypothetical protein complement(2125079..2125360) Rhodopseudomonas palustris BisA53 4359928 YP_780837.1 CDS RPE_1913 NC_008435.1 2125599 2126357 R PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: rpc:RPC_1812 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6, chymotrypsin/Hap complement(2125599..2126357) Rhodopseudomonas palustris BisA53 4359929 YP_780838.1 CDS RPE_1914 NC_008435.1 2126409 2126972 D TIGRFAM: phiE125 gp8 family; KEGG: rpc:RPC_1813 phage conserved hypothetical protein, phiE125 gp8; bacteriophage protein 2126409..2126972 Rhodopseudomonas palustris BisA53 4359930 YP_780839.1 CDS RPE_1915 NC_008435.1 2126969 2127289 D TIGRFAM: phage head-tail adaptor, putative; KEGG: rpd:RPD_1981 hypothetical protein; phage head-tail adaptor 2126969..2127289 Rhodopseudomonas palustris BisA53 4359931 YP_780840.1 CDS RPE_1916 NC_008435.1 2127323 2127733 D KEGG: rpc:RPC_1815 gene transfer agent (GTA) orfg8; hypothetical protein 2127323..2127733 Rhodopseudomonas palustris BisA53 4359932 YP_780841.1 CDS RPE_1917 NC_008435.1 2127747 2128154 D TIGRFAM: phage major tail protein, TP901-1 family; KEGG: rpc:RPC_1816 phage major tail protein, TP901-1; TP901-1 family phage major tail protein 2127747..2128154 Rhodopseudomonas palustris BisA53 4359933 YP_780842.1 CDS RPE_1918 NC_008435.1 2128165 2128485 D KEGG: nha:Nham_1420 gene transfer agent (GTA) like protein; gene transfer agent (GTA) like protein 2128165..2128485 Rhodopseudomonas palustris BisA53 4359934 YP_780843.1 CDS RPE_1919 NC_008435.1 2128482 2128709 D KEGG: rpc:RPC_1819 hypothetical protein; hypothetical protein 2128482..2128709 Rhodopseudomonas palustris BisA53 4359935 YP_780844.1 CDS RPE_1920 NC_008435.1 2128706 2129287 D KEGG: rpc:RPC_1820 gene transfer agent (GTA) like protein; gene transfer agent (GTA) like protein 2128706..2129287 Rhodopseudomonas palustris BisA53 4359936 YP_780845.1 CDS RPE_1921 NC_008435.1 2129456 2130088 D TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_1821 hypothetical protein; hypothetical protein 2129456..2130088 Rhodopseudomonas palustris BisA53 4359937 YP_780846.1 CDS RPE_1922 NC_008435.1 2130116 2131018 D KEGG: rpd:RPD_1991 phage conserved hypothetical protein BR0599; bacteriophage protein 2130116..2131018 Rhodopseudomonas palustris BisA53 4359938 YP_780847.1 CDS RPE_1923 NC_008435.1 2131075 2131518 D TIGRFAM: putative phage cell wall peptidase, NlpC/P60 family; PFAM: NLP/P60 protein; KEGG: rpc:RPC_1823 putative phage cell wall peptidase, NlpC/P60; NlpC/P60 family phage cell wall peptidase 2131075..2131518 Rhodopseudomonas palustris BisA53 4359939 YP_780848.1 CDS RPE_1924 NC_008435.1 2131518 2135372 D KEGG: rpc:RPC_1824 gene transfer agent (GTA) orfg15; gene transfer agent (GTA) orfg15 2131518..2135372 Rhodopseudomonas palustris BisA53 4359940 YP_780849.1 CDS RPE_1925 NC_008435.1 2135414 2137366 D KEGG: rpc:RPC_1825 hypothetical protein; hypothetical protein 2135414..2137366 Rhodopseudomonas palustris BisA53 4359348 YP_780850.1 CDS RPE_1926 NC_008435.1 2137430 2138227 D KEGG: rpc:RPC_1828 putative glycohydrolase; putative glycohydrolase 2137430..2138227 Rhodopseudomonas palustris BisA53 4359349 YP_780851.1 CDS RPE_1927 NC_008435.1 2138256 2138801 D KEGG: rpc:RPC_1829 hypothetical protein; hypothetical protein 2138256..2138801 Rhodopseudomonas palustris BisA53 4359350 YP_780852.1 CDS RPE_1928 NC_008435.1 2138906 2139601 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_1830 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2138906..2139601 Rhodopseudomonas palustris BisA53 4359351 YP_780853.1 CDS RPE_1929 NC_008435.1 2139712 2141082 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_1831 periplasmic sensor signal transduction histidine kinase; periplasmic sensor signal transduction histidine kinase 2139712..2141082 Rhodopseudomonas palustris BisA53 4359352 YP_780854.1 CDS RPE_1930 NC_008435.1 2141171 2141641 D KEGG: rpc:RPC_1832 LipA a lipoprotein; LipA a lipoprotein 2141171..2141641 Rhodopseudomonas palustris BisA53 4359353 YP_780855.1 CDS RPE_1931 NC_008435.1 2141857 2143290 D KEGG: rpc:RPC_1833 hypothetical protein; hypothetical protein 2141857..2143290 Rhodopseudomonas palustris BisA53 4359354 YP_780856.1 CDS RPE_1932 NC_008435.1 2143424 2144530 D KEGG: rpc:RPC_1834 tetratricopeptide TPR_2; hypothetical protein 2143424..2144530 Rhodopseudomonas palustris BisA53 4359355 YP_780857.1 CDS RPE_1933 NC_008435.1 2144618 2145121 D CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 2144618..2145121 Rhodopseudomonas palustris BisA53 4359356 YP_780858.1 CDS RPE_1934 NC_008435.1 2145118 2147100 D TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: rpc:RPC_1836 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF 2145118..2147100 Rhodopseudomonas palustris BisA53 4359357 YP_780859.1 CDS RPE_1935 NC_008435.1 2147102 2147602 D PFAM: cytochrome C biogenesis protein; KEGG: rpa:RPA1922 CycL cytochrome C-type biogenesis protein; cytochrome C biogenesis protein 2147102..2147602 Rhodopseudomonas palustris BisA53 4359358 YP_780860.1 CDS RPE_1936 NC_008435.1 2147668 2148903 R PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: rpc:RPC_3502 cobalamin synthesis protein, P47K; cobalamin synthesis protein, P47K complement(2147668..2148903) Rhodopseudomonas palustris BisA53 4359359 YP_780861.1 CDS RPE_1937 NC_008435.1 2149187 2149675 R KEGG: rpc:RPC_1839 hypothetical protein; hypothetical protein complement(2149187..2149675) Rhodopseudomonas palustris BisA53 4359360 YP_780862.1 CDS RPE_1938 NC_008435.1 2149807 2150715 R PFAM: ferredoxin; KEGG: rpc:RPC_1840 ferredoxin; ferredoxin complement(2149807..2150715) Rhodopseudomonas palustris BisA53 4359361 YP_780863.1 CDS RPE_1939 NC_008435.1 2151043 2152629 D TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rpc:RPC_1841 peptidase S1C, Do; protease Do 2151043..2152629 Rhodopseudomonas palustris BisA53 4359362 YP_780864.1 CDS RPE_1940 NC_008435.1 2152893 2153570 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpb:RPB_3442 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2152893..2153570 Rhodopseudomonas palustris BisA53 4359363 YP_780865.1 CDS RPE_1941 NC_008435.1 2153909 2155615 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_1843 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2153909..2155615 Rhodopseudomonas palustris BisA53 4359364 YP_780866.1 CDS RPE_1942 NC_008435.1 2155685 2157061 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: rpc:RPC_1844 diguanylate cyclase (GGDEF domain); diguanylate cyclase complement(2155685..2157061) Rhodopseudomonas palustris BisA53 4359365 YP_780867.1 CDS RPE_1943 NC_008435.1 2157397 2158860 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_1845 periplasmic sensor signal transduction histidine kinase; periplasmic sensor signal transduction histidine kinase 2157397..2158860 Rhodopseudomonas palustris BisA53 4359366 YP_780868.1 CDS RPE_1944 NC_008435.1 2158857 2161823 D catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 2158857..2161823 Rhodopseudomonas palustris BisA53 4359367 YP_780869.1 CDS RPE_1945 NC_008435.1 2161857 2162492 R PFAM: protein of unknown function DUF1109; KEGG: sme:SMb20532 hypothetical protein; hypothetical protein complement(2161857..2162492) Rhodopseudomonas palustris BisA53 4359368 YP_780870.1 CDS RPE_1946 NC_008435.1 2162482 2163036 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(2162482..2163036) Rhodopseudomonas palustris BisA53 4359369 YP_780871.1 CDS RPE_1947 NC_008435.1 2163350 2163658 D KEGG: sme:SMb20530 hypothetical protein; hypothetical protein 2163350..2163658 Rhodopseudomonas palustris BisA53 4359370 YP_780872.1 CDS RPE_1948 NC_008435.1 2163703 2164623 D PFAM: protein of unknown function DUF692; KEGG: sme:SMb20529 hypothetical protein; hypothetical protein 2163703..2164623 Rhodopseudomonas palustris BisA53 4359371 YP_780873.1 CDS RPE_1949 NC_008435.1 2164613 2165416 D KEGG: bps:BPSL1690 hypothetical protein; hypothetical protein 2164613..2165416 Rhodopseudomonas palustris BisA53 4359372 YP_780874.1 CDS RPE_1950 NC_008435.1 2165413 2165937 D PFAM: DoxX family protein; KEGG: sme:SMb20527 hypothetical protein; DoxX family protein 2165413..2165937 Rhodopseudomonas palustris BisA53 4359373 YP_780875.1 CDS RPE_1951 NC_008435.1 2165944 2168259 R KEGG: rpc:RPC_1847 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; multi-sensor signal transduction histidine kinase complement(2165944..2168259) Rhodopseudomonas palustris BisA53 4359374 YP_780876.1 CDS RPE_1952 NC_008435.1 2168488 2169870 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rpd:RPD_2019 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter complement(2168488..2169870) Rhodopseudomonas palustris BisA53 4359375 YP_780877.1 CDS RPE_1953 NC_008435.1 2170134 2170919 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rpd:RPD_2022 5-carboxymethyl-2-hydroxymuconate delta-isomerase; fumarylacetoacetate (FAA) hydrolase complement(2170134..2170919) Rhodopseudomonas palustris BisA53 4359376 YP_780878.1 CDS RPE_1954 NC_008435.1 2171160 2172134 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(2171160..2172134) Rhodopseudomonas palustris BisA53 4359377 YP_780879.1 CDS RPE_1955 NC_008435.1 2172204 2173715 R PFAM: protein of unknown function DUF112, transmembrane; KEGG: rpc:RPC_1851 protein of unknown function DUF112, transmembrane; hypothetical protein complement(2172204..2173715) Rhodopseudomonas palustris BisA53 4359378 YP_780880.1 CDS RPE_1956 NC_008435.1 2174037 2174540 R KEGG: rpc:RPC_1852 hypothetical protein; hypothetical protein complement(2174037..2174540) Rhodopseudomonas palustris BisA53 4359379 YP_780881.1 CDS RPE_1957 NC_008435.1 2174635 2175657 R PFAM: Uncharacterized protein UPF0065; KEGG: rpb:RPB_3428 uncharacterized protein UPF0065; hypothetical protein complement(2174635..2175657) Rhodopseudomonas palustris BisA53 4359380 YP_780882.1 CDS RPE_1958 NC_008435.1 2176018 2177295 R catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA; formyl-coenzyme A transferase complement(2176018..2177295) Rhodopseudomonas palustris BisA53 4359381 YP_780883.1 CDS RPE_1959 NC_008435.1 2177452 2178147 R PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rpd:RPD_2028 GntR-like; GntR family transcriptional regulator complement(2177452..2178147) Rhodopseudomonas palustris BisA53 4359382 YP_780884.1 CDS RPE_1960 NC_008435.1 2178745 2180610 D PFAM: K+ potassium transporter; KEGG: rpc:RPC_1856 K+ potassium transporter; K+ potassium transporter 2178745..2180610 Rhodopseudomonas palustris BisA53 4359383 YP_780885.1 CDS RPE_1961 NC_008435.1 2180659 2180931 R KEGG: rpc:RPC_4314 hypothetical protein; hypothetical protein complement(2180659..2180931) Rhodopseudomonas palustris BisA53 4359384 YP_780886.1 CDS RPE_1962 NC_008435.1 2180954 2181412 R KEGG: rpc:RPC_4313 hypothetical protein; hypothetical protein complement(2180954..2181412) Rhodopseudomonas palustris BisA53 4359385 YP_780887.1 CDS RPE_1963 NC_008435.1 2181625 2181963 D KEGG: rpc:RPC_4312 hypothetical protein; hypothetical protein 2181625..2181963 Rhodopseudomonas palustris BisA53 4359386 YP_780888.1 CDS RPE_1964 NC_008435.1 2181992 2182651 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_4311 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2181992..2182651 Rhodopseudomonas palustris BisA53 4359387 YP_780889.1 CDS RPE_1965 NC_008435.1 2182648 2184009 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: rpc:RPC_4310 periplasmic sensor signal transduction histidine kinase; periplasmic sensor signal transduction histidine kinase 2182648..2184009 Rhodopseudomonas palustris BisA53 4359388 YP_780890.1 CDS RPE_1966 NC_008435.1 2184006 2184191 R KEGG: rpb:RPB_4310 hypothetical protein; hypothetical protein complement(2184006..2184191) Rhodopseudomonas palustris BisA53 4359389 YP_780891.1 CDS RPE_1967 NC_008435.1 2184661 2184957 D PFAM: histone family protein DNA-binding protein; KEGG: bja:blr4404 histone-like protein; histone family protein DNA-binding protein 2184661..2184957 Rhodopseudomonas palustris BisA53 4359390 YP_780892.1 CDS RPE_1968 NC_008435.1 2185110 2185913 R TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: rpc:RPC_1949 cobalt ABC transporter CbiQ, permease subunit; cobalt ABC transporter inner membrane subunit CbiQ complement(2185110..2185913) Rhodopseudomonas palustris BisA53 4359391 YP_780893.1 CDS RPE_1969 NC_008435.1 2185910 2186563 R KEGG: rpc:RPC_1950 hypothetical protein; hypothetical protein complement(2185910..2186563) Rhodopseudomonas palustris BisA53 4359392 YP_780894.1 CDS RPE_1970 NC_008435.1 2186560 2187195 R catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM complement(2186560..2187195) Rhodopseudomonas palustris BisA53 4359393 YP_780895.1 CDS RPE_1971 NC_008435.1 2187209 2187988 R KEGG: rpc:RPC_1952 ABC-type Co2+ transport system, periplasmic component; ABC-type Co2+ transport system, periplasmic component complement(2187209..2187988) Rhodopseudomonas palustris BisA53 4359394 YP_780896.1 CDS RPE_1972 NC_008435.1 2188097 2188600 R Inhibits transcription at high concentrations of nickel; nickel responsive regulator complement(2188097..2188600) Rhodopseudomonas palustris BisA53 4359395 YP_780897.1 CDS RPE_1973 NC_008435.1 2188718 2189029 D hypothetical protein 2188718..2189029 Rhodopseudomonas palustris BisA53 4359396 YP_780898.1 CDS RPE_1974 NC_008435.1 2189022 2189741 D KEGG: sme:SMa1198 possible copper export protein; putative copper export protein-like protein 2189022..2189741 Rhodopseudomonas palustris BisA53 4359397 YP_780899.1 CDS RPE_1975 NC_008435.1 2189742 2190092 R KEGG: rpa:RPA2316 enoyl-CoA hydratase; enoyl-CoA hydratase/carnithine racemase-like protein complement(2189742..2190092) Rhodopseudomonas palustris BisA53 4359398 YP_780900.1 CDS RPE_1976 NC_008435.1 2190272 2191270 D TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: rpc:RPC_2060 TIM-barrel protein, YjbN family; tRNA-dihydrouridine synthase A 2190272..2191270 Rhodopseudomonas palustris BisA53 4359399 YP_780901.1 CDS RPE_1977 NC_008435.1 2191281 2191793 R TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_2062 hypothetical protein; hypothetical protein complement(2191281..2191793) Rhodopseudomonas palustris BisA53 4359487 YP_780902.1 CDS RPE_1978 NC_008435.1 2191845 2193482 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_2064 periplasmic sensor signal transduction histidine kinase; sensor signal transduction histidine kinase complement(2191845..2193482) Rhodopseudomonas palustris BisA53 4359488 YP_780903.1 CDS RPE_1979 NC_008435.1 2193695 2194564 R PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rpa:RPA1973 3-hydroxyisobutyrate dehydrogenase; 3-hydroxyisobutyrate dehydrogenase complement(2193695..2194564) Rhodopseudomonas palustris BisA53 4359489 YP_780904.1 CDS RPE_1980 NC_008435.1 2194753 2195919 D KEGG: rpb:RPB_3393 MRP-like protein (ATP/GTP-binding protein); MRP-like protein 2194753..2195919 Rhodopseudomonas palustris BisA53 4359490 YP_780905.1 CDS RPE_1981 NC_008435.1 2196113 2197201 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rpc:RPC_2067 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal 2196113..2197201 Rhodopseudomonas palustris BisA53 4359491 YP_780906.1 CDS RPE_1982 NC_008435.1 2197288 2199126 R PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpc:RPC_2071 TRAP dicarboxylate transporter-DctM subunit; TRAP C4-dicarboxylate transport system permease DctM complement(2197288..2199126) Rhodopseudomonas palustris BisA53 4359492 YP_780907.1 CDS RPE_1983 NC_008435.1 2199158 2199787 R PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rpc:RPC_2072 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ complement(2199158..2199787) Rhodopseudomonas palustris BisA53 4359493 YP_780908.1 CDS moaA NC_008435.1 2199915 2200946 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(2199915..2200946) Rhodopseudomonas palustris BisA53 4359494 YP_780909.1 CDS RPE_1985 NC_008435.1 2201047 2201496 R KEGG: rpc:RPC_2074 hypothetical protein; hypothetical protein complement(2201047..2201496) Rhodopseudomonas palustris BisA53 4359495 YP_780910.1 CDS RPE_1986 NC_008435.1 2201647 2202333 R KEGG: rpc:RPC_2075 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoglycolate phosphatase complement(2201647..2202333) Rhodopseudomonas palustris BisA53 4359496 YP_780911.1 CDS RPE_1987 NC_008435.1 2202492 2203217 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 2202492..2203217 Rhodopseudomonas palustris BisA53 4359497 YP_780912.1 CDS RPE_1988 NC_008435.1 2203214 2203735 D KEGG: rpc:RPC_2077 hypothetical protein; hypothetical protein 2203214..2203735 Rhodopseudomonas palustris BisA53 4359498 YP_780913.1 CDS RPE_1989 NC_008435.1 2203760 2205145 D TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rpc:RPC_2078 glutathione reductase; glutathione reductase 2203760..2205145 Rhodopseudomonas palustris BisA53 4359499 YP_780914.1 CDS RPE_1990 NC_008435.1 2205153 2206052 R KEGG: rpc:RPC_2079 hypothetical protein; hypothetical protein complement(2205153..2206052) Rhodopseudomonas palustris BisA53 4359500 YP_780915.1 CDS RPE_1991 NC_008435.1 2206225 2207613 D KEGG: rpc:RPC_2080 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase, class II; phospho-2-dehydro-3-deoxyheptonate aldolase 2206225..2207613 Rhodopseudomonas palustris BisA53 4359501 YP_780916.1 CDS RPE_1992 NC_008435.1 2207615 2207968 D PFAM: diacylglycerol kinase; KEGG: rpc:RPC_2081 diacylglycerol kinase; diacylglycerol kinase 2207615..2207968 Rhodopseudomonas palustris BisA53 4359502 YP_780917.1 CDS nadE NC_008435.1 2208003 2209766 D NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 2208003..2209766 Rhodopseudomonas palustris BisA53 4359503 YP_780918.1 CDS RPE_1994 NC_008435.1 2209796 2210206 R PFAM: PilT protein domain protein; KEGG: rpa:RPA1992 possible NtrR protein; PilT domain-containing protein complement(2209796..2210206) Rhodopseudomonas palustris BisA53 4359504 YP_780919.1 CDS RPE_1995 NC_008435.1 2210203 2210466 R PFAM: SpoVT/AbrB domain protein; KEGG: rpd:RPD_2062 SpoVT/AbrB-like; SpoVT/AbrB domain-containing protein complement(2210203..2210466) Rhodopseudomonas palustris BisA53 4359505 YP_780920.1 CDS RPE_1996 NC_008435.1 2210591 2211733 R KEGG: rpc:RPC_2084 hypothetical protein; hypothetical protein complement(2210591..2211733) Rhodopseudomonas palustris BisA53 4359506 YP_780921.1 CDS RPE_1997 NC_008435.1 2211826 2212194 R KEGG: rpc:RPC_2085 hypothetical protein; hypothetical protein complement(2211826..2212194) Rhodopseudomonas palustris BisA53 4359507 YP_780922.1 CDS cysS NC_008435.1 2212472 2213863 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2212472..2213863 Rhodopseudomonas palustris BisA53 4359508 YP_780923.1 CDS RPE_1999 NC_008435.1 2213860 2214156 D KEGG: rpd:RPD_2066 hypothetical protein; hypothetical protein 2213860..2214156 Rhodopseudomonas palustris BisA53 4359509 YP_780924.1 CDS RPE_2000 NC_008435.1 2214156 2214287 D KEGG: rpa:RPA1998 hypothetical protein; hypothetical protein 2214156..2214287 Rhodopseudomonas palustris BisA53 4359510 YP_780925.1 CDS RPE_2001 NC_008435.1 2214293 2214802 D PFAM: GCN5-related N-acetyltransferase; KEGG: rpc:RPC_2088 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2214293..2214802 Rhodopseudomonas palustris BisA53 4359511 YP_780926.1 CDS RPE_2002 NC_008435.1 2214799 2216397 D TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: rpc:RPC_2089 2-isopropylmalate synthase/homocitrate synthase; putative alpha-isopropylmalate/homocitrate synthase family transferase 2214799..2216397 Rhodopseudomonas palustris BisA53 4359512 YP_780927.1 CDS RPE_2003 NC_008435.1 2216410 2216784 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:blr3793 putative lyase; glyoxalase/bleomycin resistance protein/dioxygenase 2216410..2216784 Rhodopseudomonas palustris BisA53 4359513 YP_780928.1 CDS RPE_2004 NC_008435.1 2216988 2218544 D thiamine-pyrophosphate requiring enzyme; hypothetical protein 2216988..2218544 Rhodopseudomonas palustris BisA53 4359514 YP_780929.1 CDS RPE_2005 NC_008435.1 2218556 2219938 D PFAM: FAD linked oxidase domain protein; KEGG: rpd:RPD_2071 FAD linked oxidase-like; FAD linked oxidase domain-containing protein 2218556..2219938 Rhodopseudomonas palustris BisA53 4359515 YP_780930.1 CDS RPE_2006 NC_008435.1 2220112 2220738 R PFAM: conserved hypothetical protein 730; KEGG: rpc:RPC_2093 conserved hypothetical protein 730; hypothetical protein complement(2220112..2220738) Rhodopseudomonas palustris BisA53 4359516 YP_780931.1 CDS RPE_2007 NC_008435.1 2220933 2222903 D PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_2094 ABC transporter related; ABC transporter-like protein 2220933..2222903 Rhodopseudomonas palustris BisA53 4359517 YP_780932.1 CDS RPE_2008 NC_008435.1 2222951 2223649 D catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 2222951..2223649 Rhodopseudomonas palustris BisA53 4359518 YP_780933.1 CDS RPE_2009 NC_008435.1 2223746 2224624 D KEGG: rpc:RPC_2096 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; outer membrane TOM13 domain protein; CDP-diacylglycerol--serine O-phosphatidyltransferase 2223746..2224624 Rhodopseudomonas palustris BisA53 4359519 YP_780934.1 CDS RPE_2010 NC_008435.1 2225019 2225792 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: rpc:RPC_2100 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2225019..2225792 Rhodopseudomonas palustris BisA53 4359520 YP_780935.1 CDS RPE_2011 NC_008435.1 2225823 2226641 D PFAM: OmpA/MotB domain protein; KEGG: rpc:RPC_2101 OmpA/MotB; OmpA/MotB domain-containing protein 2225823..2226641 Rhodopseudomonas palustris BisA53 4359521 YP_780936.1 CDS RPE_2012 NC_008435.1 2226805 2228697 D PFAM: K+ potassium transporter; KEGG: rpc:RPC_2102 K+ potassium transporter; K+ potassium transporter 2226805..2228697 Rhodopseudomonas palustris BisA53 4359522 YP_780937.1 CDS RPE_2013 NC_008435.1 2228826 2229179 D SMART: Rhodanese domain protein; KEGG: rpd:RPD_2080 rhodanese-like; rhodanese domain-containing protein 2228826..2229179 Rhodopseudomonas palustris BisA53 4359523 YP_780938.1 CDS RPE_2014 NC_008435.1 2229187 2230341 D PFAM: aminotransferase, class V; aminotransferase, class I and II; KEGG: rpc:RPC_2104 aminotransferase, class I and II; hypothetical protein 2229187..2230341 Rhodopseudomonas palustris BisA53 4359524 YP_780939.1 CDS RPE_2015 NC_008435.1 2230379 2231491 D PFAM: extracellular solute-binding protein, family 1; KEGG: rpc:RPC_2105 extracellular solute-binding protein, family 1; extracellular solute-binding protein 2230379..2231491 Rhodopseudomonas palustris BisA53 4359525 YP_780940.1 CDS RPE_2016 NC_008435.1 2231488 2232012 D hypothetical protein 2231488..2232012 Rhodopseudomonas palustris BisA53 4359526 YP_780941.1 CDS RPE_2017 NC_008435.1 2232081 2232215 D KEGG: rpa:RPA4003 hypothetical protein; hypothetical protein 2232081..2232215 Rhodopseudomonas palustris BisA53 4359527 YP_780942.1 CDS RPE_2018 NC_008435.1 2232297 2233229 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(2232297..2233229) Rhodopseudomonas palustris BisA53 4359528 YP_780943.1 CDS RPE_2019 NC_008435.1 2233229 2234251 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpc:RPC_2107 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase complement(2233229..2234251) Rhodopseudomonas palustris BisA53 4359529 YP_780944.1 CDS RPE_2020 NC_008435.1 2234285 2235565 R FabF, beta-Ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-(acyl carrier protein) synthase II complement(2234285..2235565) Rhodopseudomonas palustris BisA53 4359530 YP_780945.1 CDS RPE_2021 NC_008435.1 2235584 2236792 R FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II complement(2235584..2236792) Rhodopseudomonas palustris BisA53 4359531 YP_780946.1 CDS RPE_2022 NC_008435.1 2236785 2237258 R PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: rpc:RPC_2110 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ complement(2236785..2237258) Rhodopseudomonas palustris BisA53 4359532 YP_780947.2 CDS RPE_2023 NC_008435.1 2237269 2237550 R Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; acyl carrier protein complement(2237269..2237550) Rhodopseudomonas palustris BisA53 4359533 YP_780948.1 CDS RPE_2024 NC_008435.1 2237737 2238045 R KEGG: rpc:RPC_2112 hypothetical protein; hypothetical protein complement(2237737..2238045) Rhodopseudomonas palustris BisA53 4359534 YP_780949.1 CDS RPE_2025 NC_008435.1 2238145 2238666 R PFAM: MgtC/SapB transporter; KEGG: rpc:RPC_2114 MgtC/SapB transporter; MgtC/SapB transporter complement(2238145..2238666) Rhodopseudomonas palustris BisA53 4359535 YP_780950.1 CDS RPE_2026 NC_008435.1 2238663 2239241 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: rpc:RPC_2115 uncharacterised peroxidase-related; peroxidase-like protein complement(2238663..2239241) Rhodopseudomonas palustris BisA53 4359536 YP_780951.1 CDS RPE_2027 NC_008435.1 2239336 2241087 R PFAM: protein of unknown function DUF87; KEGG: rpc:RPC_2116 protein of unknown function DUF87; hypothetical protein complement(2239336..2241087) Rhodopseudomonas palustris BisA53 4359537 YP_780952.1 CDS RPE_2028 NC_008435.1 2241467 2242399 D PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rpb:RPB_1903 gluconolactonase precursor; SMP-30/gluconolaconase/LRE domain-containing protein 2241467..2242399 Rhodopseudomonas palustris BisA53 4359538 YP_780953.1 CDS RPE_2029 NC_008435.1 2242594 2243187 D PFAM: GCN5-related N-acetyltransferase; KEGG: rpb:RPB_1904 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2242594..2243187 Rhodopseudomonas palustris BisA53 4359539 YP_780954.1 CDS RPE_2030 NC_008435.1 2243314 2243598 D KEGG: rpa:RPA3622 hypothetical protein; hypothetical protein 2243314..2243598 Rhodopseudomonas palustris BisA53 4359400 YP_780955.1 CDS RPE_2031 NC_008435.1 2243756 2244598 R PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpc:RPC_2122 ATPase associated with various cellular activities, AAA_5; ATPase complement(2243756..2244598) Rhodopseudomonas palustris BisA53 4359401 YP_780956.1 CDS RPE_2032 NC_008435.1 2244794 2246719 R KEGG: rpd:RPD_3460 GGDEF domain; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; diguanylate cyclase complement(2244794..2246719) Rhodopseudomonas palustris BisA53 4359402 YP_780957.1 CDS RPE_2033 NC_008435.1 2247110 2248285 D KEGG: rpb:RPB_1913 hypothetical protein; hypothetical protein 2247110..2248285 Rhodopseudomonas palustris BisA53 4359403 YP_780958.1 CDS RPE_2034 NC_008435.1 2248425 2248886 D SMART: Rhodanese domain protein; KEGG: rpd:RPD_3458 rhodanese-like; rhodanese domain-containing protein 2248425..2248886 Rhodopseudomonas palustris BisA53 4359404 YP_780959.1 CDS RPE_2035 NC_008435.1 2249000 2249857 D PFAM: Rhodanese domain protein; KEGG: rpa:RPA3613 putative thiosulfate sulfurtransferase; 3-mercaptopyruvate sulfurtransferase 2249000..2249857 Rhodopseudomonas palustris BisA53 4359405 YP_780960.1 CDS RPE_2036 NC_008435.1 2249864 2250658 R KEGG: rpa:RPA3612 hypothetical protein; hypothetical protein complement(2249864..2250658) Rhodopseudomonas palustris BisA53 4359406 YP_780961.1 CDS RPE_2037 NC_008435.1 2251003 2252277 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpc:RPC_2129 ErfK/YbiS/YcfS/YnhG; hypothetical protein 2251003..2252277 Rhodopseudomonas palustris BisA53 4359407 YP_780962.1 CDS RPE_2038 NC_008435.1 2252331 2252534 R KEGG: rpc:RPC_2130 hypothetical protein; hypothetical protein complement(2252331..2252534) Rhodopseudomonas palustris BisA53 4359408 YP_780963.1 CDS RPE_2039 NC_008435.1 2252778 2254427 D ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 2252778..2254427 Rhodopseudomonas palustris BisA53 4359409 YP_780964.1 CDS RPE_2040 NC_008435.1 2254443 2254658 R KEGG: rpc:RPC_2132 PilT protein-like; hypothetical protein complement(2254443..2254658) Rhodopseudomonas palustris BisA53 4359410 YP_780965.1 CDS RPE_2041 NC_008435.1 2254717 2254974 R TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: rpc:RPC_2133 transcriptional regulator, AbrB family; AbrB family transcriptional regulator complement(2254717..2254974) Rhodopseudomonas palustris BisA53 4359411 YP_780966.1 CDS RPE_2042 NC_008435.1 2255046 2255303 R KEGG: nwi:Nwi_2484 hypothetical protein; hypothetical protein complement(2255046..2255303) Rhodopseudomonas palustris BisA53 4359412 YP_780967.1 CDS RPE_2043 NC_008435.1 2255290 2255589 R PFAM: protein of unknown function DUF497; KEGG: rpc:RPC_2135 protein of unknown function DUF497; hypothetical protein complement(2255290..2255589) Rhodopseudomonas palustris BisA53 4359413 YP_780968.1 CDS RPE_2044 NC_008435.1 2255688 2256458 D catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate; trans-aconitate 2-methyltransferase 2255688..2256458 Rhodopseudomonas palustris BisA53 4359414 YP_780969.1 CDS RPE_2045 NC_008435.1 2256575 2257165 D PFAM: Uncharacterized protein UPF0114; KEGG: rpc:RPC_2137 uncharacterized protein UPF0114; hypothetical protein 2256575..2257165 Rhodopseudomonas palustris BisA53 4359415 YP_780970.1 CDS RPE_2046 NC_008435.1 2257225 2257425 D KEGG: rpc:RPC_2138 hypothetical protein; hypothetical protein 2257225..2257425 Rhodopseudomonas palustris BisA53 4359416 YP_780971.1 CDS RPE_2047 NC_008435.1 2257422 2258666 D TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rpc:RPC_2140 lytic murein transglycosylase; lytic murein transglycosylase 2257422..2258666 Rhodopseudomonas palustris BisA53 4359417 YP_780972.1 CDS RPE_2048 NC_008435.1 2258675 2259493 R TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_1925 phosphonate uptake transporter; phosphonate ABC transporter inner membrane subunit complement(2258675..2259493) Rhodopseudomonas palustris BisA53 4359418 YP_780973.1 CDS RPE_2049 NC_008435.1 2259495 2260304 R TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_1926 phosphonate uptake transporter; phosphonate ABC transporter inner membrane subunit complement(2259495..2260304) Rhodopseudomonas palustris BisA53 4359419 YP_780974.1 CDS RPE_2050 NC_008435.1 2260304 2261143 R KEGG: rpb:RPB_1927 phosphonate ABC transporter PhnC, ATP-binding; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate ABC transporter ATPase complement(2260304..2261143) Rhodopseudomonas palustris BisA53 4359420 YP_780975.1 CDS RPE_2051 NC_008435.1 2261235 2262230 R TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: rpb:RPB_1928 phosphonate-binding periplasmic protein; phosphonate ABC transporter periplasmic phosphonate-binding protein complement(2261235..2262230) Rhodopseudomonas palustris BisA53 4359421 YP_780976.1 CDS RPE_2052 NC_008435.1 2262504 2262791 R KEGG: rpd:RPD_3448 hypothetical protein; hypothetical protein complement(2262504..2262791) Rhodopseudomonas palustris BisA53 4359422 YP_780977.1 CDS RPE_2053 NC_008435.1 2263004 2263309 R KEGG: rpc:RPC_2142 hypothetical protein; hypothetical protein complement(2263004..2263309) Rhodopseudomonas palustris BisA53 4359423 YP_780978.1 CDS RPE_2054 NC_008435.1 2263912 2264310 D PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rpc:RPC_2143 BFD-like (2Fe-2S)-binding region; BFD/(2Fe-2S)-binding domain-containing protein 2263912..2264310 Rhodopseudomonas palustris BisA53 4359424 YP_780979.1 CDS RPE_2055 NC_008435.1 2264516 2264995 D TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: rpc:RPC_2144 bacterioferritin; bacterioferritin 2264516..2264995 Rhodopseudomonas palustris BisA53 4359425 YP_780980.1 CDS RPE_2056 NC_008435.1 2265105 2267132 R PFAM: chemotaxis sensory transducer; KEGG: rpc:RPC_2149 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2265105..2267132) Rhodopseudomonas palustris BisA53 4359426 YP_780981.1 CDS RPE_2057 NC_008435.1 2267371 2267847 R KEGG: rpc:RPC_2150 membrane protein-like; hypothetical protein complement(2267371..2267847) Rhodopseudomonas palustris BisA53 4359427 YP_780982.1 CDS RPE_2058 NC_008435.1 2268005 2269129 R KEGG: rpc:RPC_2153 hypothetical protein; hypothetical protein complement(2268005..2269129) Rhodopseudomonas palustris BisA53 4359428 YP_780983.1 CDS RPE_2059 NC_008435.1 2269501 2269806 D KEGG: rpc:RPC_2154 hypothetical protein; hypothetical protein 2269501..2269806 Rhodopseudomonas palustris BisA53 4359429 YP_780984.1 CDS RPE_2060 NC_008435.1 2270523 2271008 D KEGG: bja:bll5279 hypothetical protein; hypothetical protein 2270523..2271008 Rhodopseudomonas palustris BisA53 4359430 YP_780985.1 CDS RPE_2061 NC_008435.1 2271260 2271490 D KEGG: rpd:RPD_3434 hypothetical protein; hypothetical protein 2271260..2271490 Rhodopseudomonas palustris BisA53 4359431 YP_780986.1 CDS RPE_2062 NC_008435.1 2271815 2273338 D TIGRFAM: diguanylate cyclase; hemerythrin-like metal-binding protein; PFAM: GGDEF domain containing protein; Hemerythrin HHE cation binding domain protein; KEGG: rpa:RPA1642 putative diguanylate cyclase (GGDEF); diguanylate cyclase 2271815..2273338 Rhodopseudomonas palustris BisA53 4359432 YP_780987.1 CDS RPE_2063 NC_008435.1 2273603 2274232 R KEGG: rpc:RPC_2159 hypothetical protein; hypothetical protein complement(2273603..2274232) Rhodopseudomonas palustris BisA53 4359433 YP_780988.1 CDS RPE_2064 NC_008435.1 2274420 2274632 R KEGG: noc:Noc_1857 hypothetical protein; hypothetical protein complement(2274420..2274632) Rhodopseudomonas palustris BisA53 4359434 YP_780989.1 CDS RPE_2065 NC_008435.1 2275184 2275696 D KEGG: rpb:RPB_1951 hypothetical protein; hypothetical protein 2275184..2275696 Rhodopseudomonas palustris BisA53 4359435 YP_780990.1 CDS RPE_2066 NC_008435.1 2275851 2276417 D PFAM: protein of unknown function DUF1568; KEGG: rpb:RPB_1952 protein of unknown function DUF1568; hypothetical protein 2275851..2276417 Rhodopseudomonas palustris BisA53 4359436 YP_780991.1 CDS RPE_2067 NC_008435.1 2276532 2276870 R hypothetical protein complement(2276532..2276870) Rhodopseudomonas palustris BisA53 4359437 YP_780992.1 CDS RPE_2068 NC_008435.1 2277016 2277678 R hypothetical protein complement(2277016..2277678) Rhodopseudomonas palustris BisA53 4359438 YP_780993.1 CDS RPE_2069 NC_008435.1 2277789 2279714 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(2277789..2279714) Rhodopseudomonas palustris BisA53 4359439 YP_780994.1 CDS RPE_2070 NC_008435.1 2279954 2280562 R PFAM: thiamine monophosphate synthase; KEGG: rpb:RPB_1955 thiamine-phosphate pyrophosphorylase; thiamine-phosphate pyrophosphorylase complement(2279954..2280562) Rhodopseudomonas palustris BisA53 4359440 YP_780995.1 CDS thiG NC_008435.1 2280549 2281331 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(2280549..2281331) Rhodopseudomonas palustris BisA53 4359441 YP_780996.1 CDS RPE_2072 NC_008435.1 2281593 2281790 R TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: rpb:RPB_1957 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS complement(2281593..2281790) Rhodopseudomonas palustris BisA53 4359442 YP_780997.1 CDS RPE_2073 NC_008435.1 2281781 2282857 R PFAM: FAD dependent oxidoreductase; KEGG: rpd:RPD_3428 glycine oxidase ThiO; glycine oxidase ThiO complement(2281781..2282857) Rhodopseudomonas palustris BisA53 4359443 YP_780998.1 CDS RPE_2074 NC_008435.1 2283120 2283719 D PFAM: PRC-barrel domain protein; KEGG: rpc:RPC_2167 PRC-barrel; PRC-barrel domain-containing protein 2283120..2283719 Rhodopseudomonas palustris BisA53 4359444 YP_780999.1 CDS RPE_2075 NC_008435.1 2283891 2285228 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpc:RPC_2168 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2283891..2285228 Rhodopseudomonas palustris BisA53 4359445 YP_781000.1 CDS RPE_2076 NC_008435.1 2285445 2286986 R KEGG: rpc:RPC_2169 hypothetical protein; hypothetical protein complement(2285445..2286986) Rhodopseudomonas palustris BisA53 4359446 YP_781001.1 CDS RPE_2077 NC_008435.1 2287161 2287688 R TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpc:RPC_2170 twin-arginine translocation pathway signal; hypothetical protein complement(2287161..2287688) Rhodopseudomonas palustris BisA53 4359447 YP_781002.1 CDS RPE_2078 NC_008435.1 2287739 2288461 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpd:RPD_3424 ErfK/YbiS/YcfS/YnhG; hypothetical protein complement(2287739..2288461) Rhodopseudomonas palustris BisA53 4359448 YP_781003.1 CDS RPE_2079 NC_008435.1 2288714 2289025 D KEGG: rpc:RPC_2174 hypothetical protein; hypothetical protein 2288714..2289025 Rhodopseudomonas palustris BisA53 4359449 YP_781004.1 CDS RPE_2080 NC_008435.1 2289072 2290541 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bja:bll5570 hypothetical protein; amidohydrolase complement(2289072..2290541) Rhodopseudomonas palustris BisA53 4359450 YP_781005.1 CDS RPE_2081 NC_008435.1 2290634 2291527 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_4895 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2290634..2291527) Rhodopseudomonas palustris BisA53 4359451 YP_781006.1 CDS RPE_2082 NC_008435.1 2291642 2292637 D PFAM: aldo/keto reductase; KEGG: rpc:RPC_4894 aldo/keto reductase; aldo/keto reductase 2291642..2292637 Rhodopseudomonas palustris BisA53 4358399 YP_781007.1 CDS RPE_2083 NC_008435.1 2292674 2293729 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpc:RPC_4893 alcohol dehydrogenase GroES-like; alcohol dehydrogenase 2292674..2293729 Rhodopseudomonas palustris BisA53 4358400 YP_781008.1 CDS RPE_2084 NC_008435.1 2293781 2294284 D PFAM: regulatory protein, MarR; KEGG: rpc:RPC_2962 transcriptional regulator, MarR family; MarR family transcriptional regulator 2293781..2294284 Rhodopseudomonas palustris BisA53 4358401 YP_781009.1 CDS RPE_2085 NC_008435.1 2294281 2294727 D KEGG: rpd:RPD_3089 hypothetical protein; hypothetical protein 2294281..2294727 Rhodopseudomonas palustris BisA53 4358402 YP_781010.1 CDS RPE_2086 NC_008435.1 2295089 2297875 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: bja:blr4813 hypothetical protein; diguanylate cyclase/phosphodiesterase 2295089..2297875 Rhodopseudomonas palustris BisA53 4358403 YP_781011.1 CDS RPE_2087 NC_008435.1 2297919 2298311 R KEGG: rpb:RPB_2455 hypothetical protein; hypothetical protein complement(2297919..2298311) Rhodopseudomonas palustris BisA53 4358404 YP_781012.1 CDS RPE_2088 NC_008435.1 2298633 2298968 D KEGG: rpb:RPB_3274 hypothetical protein; hypothetical protein 2298633..2298968 Rhodopseudomonas palustris BisA53 4358405 YP_781013.1 CDS RPE_2089 NC_008435.1 2299013 2299267 R KEGG: rpc:RPC_2177 hypothetical protein; hypothetical protein complement(2299013..2299267) Rhodopseudomonas palustris BisA53 4358406 YP_781014.1 CDS RPE_2090 NC_008435.1 2299430 2300623 D PFAM: Extensin family protein; KEGG: rpc:RPC_2178 extensin-like; extensin family protein 2299430..2300623 Rhodopseudomonas palustris BisA53 4358407 YP_781015.1 CDS RPE_2091 NC_008435.1 2300624 2301259 R PFAM: regulatory protein, TetR; KEGG: rpa:RPA3544 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2300624..2301259) Rhodopseudomonas palustris BisA53 4358408 YP_781016.1 CDS RPE_2092 NC_008435.1 2301414 2302619 D PFAM: secretion protein HlyD family protein; KEGG: rpc:RPC_2180 secretion protein HlyD; secretion protein HlyD family protein 2301414..2302619 Rhodopseudomonas palustris BisA53 4358409 YP_781017.1 CDS RPE_2093 NC_008435.1 2302649 2304247 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rpc:RPC_2181 drug resistance transporter EmrB/QacA subfamily; EmrB/QacA family drug resistance transporter 2302649..2304247 Rhodopseudomonas palustris BisA53 4358410 YP_781018.1 CDS RPE_2094 NC_008435.1 2304438 2304818 D hypothetical protein 2304438..2304818 Rhodopseudomonas palustris BisA53 4358411 YP_781019.1 CDS RPE_2095 NC_008435.1 2304898 2307204 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpc:RPC_4299 TonB-dependent receptor; TonB-dependent receptor 2304898..2307204 Rhodopseudomonas palustris BisA53 4358412 YP_781020.1 CDS RPE_2096 NC_008435.1 2307576 2308646 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bja:bll2645 hypothetical protein; type 12 methyltransferase complement(2307576..2308646) Rhodopseudomonas palustris BisA53 4358413 YP_781021.1 CDS RPE_2097 NC_008435.1 2308798 2309832 D PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ade:Adeh_2267 transcriptional regulator, AraC family; AraC family transcriptional regulator 2308798..2309832 Rhodopseudomonas palustris BisA53 4358414 YP_781022.1 CDS RPE_2098 NC_008435.1 2310450 2311334 R PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: rpc:RPC_2185 negative regulator of AmpC, AmpD; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD complement(2310450..2311334) Rhodopseudomonas palustris BisA53 4358416 YP_781023.1 CDS mraW NC_008435.1 2311692 2312894 D TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: rpc:RPC_2186 methyltransferase; S-adenosyl-methyltransferase MraW 2311692..2312894 Rhodopseudomonas palustris BisA53 4358417 YP_781024.1 CDS RPE_2100 NC_008435.1 2312897 2313277 D KEGG: rpc:RPC_2187 hypothetical protein; hypothetical protein 2312897..2313277 Rhodopseudomonas palustris BisA53 4358418 YP_781025.1 CDS RPE_2101 NC_008435.1 2313274 2315028 D PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: rpc:RPC_2188 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 2313274..2315028 Rhodopseudomonas palustris BisA53 4358419 YP_781026.1 CDS murE NC_008435.1 2315175 2316632 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 2315175..2316632 Rhodopseudomonas palustris BisA53 4358420 YP_781027.1 CDS RPE_2103 NC_008435.1 2316629 2318071 D TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: rpc:RPC_2190 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase 2316629..2318071 Rhodopseudomonas palustris BisA53 4358421 YP_781028.1 CDS mraY NC_008435.1 2318082 2319164 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 2318082..2319164 Rhodopseudomonas palustris BisA53 4358422 YP_781029.1 CDS murD NC_008435.1 2319316 2320764 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 2319316..2320764 Rhodopseudomonas palustris BisA53 4358423 YP_781030.1 CDS RPE_2106 NC_008435.1 2321152 2322303 D TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: rpc:RPC_3307 cell cycle protein; cell division protein FtsW 2321152..2322303 Rhodopseudomonas palustris BisA53 4358424 YP_781031.1 CDS murG NC_008435.1 2322347 2323471 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 2322347..2323471 Rhodopseudomonas palustris BisA53 4358425 YP_781032.1 CDS murC NC_008435.1 2323638 2325041 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 2323638..2325041 Rhodopseudomonas palustris BisA53 4358426 YP_781033.1 CDS RPE_2109 NC_008435.1 2325209 2325499 R PFAM: Excinuclease ABC, C subunit domain protein; KEGG: nwi:Nwi_1053 excinuclease ABC, C subunit; excinuclease ABC subunit C complement(2325209..2325499) Rhodopseudomonas palustris BisA53 4358427 YP_781034.1 CDS murB NC_008435.1 2325631 2326596 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 2325631..2326596 Rhodopseudomonas palustris BisA53 4358428 YP_781035.1 CDS RPE_2111 NC_008435.1 2326615 2327439 R KEGG: rpb:RPB_1999 hypothetical protein; hypothetical protein complement(2326615..2327439) Rhodopseudomonas palustris BisA53 4358429 YP_781036.1 CDS RPE_2112 NC_008435.1 2327560 2328741 R PFAM: glycosyl transferase, group 1; KEGG: rpc:RPC_3302 glycosyl transferase, group 1; group 1 glycosyl transferase complement(2327560..2328741) Rhodopseudomonas palustris BisA53 4358430 YP_781037.1 CDS ddl NC_008435.1 2328865 2329791 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 2328865..2329791 Rhodopseudomonas palustris BisA53 4358431 YP_781038.1 CDS RPE_2114 NC_008435.1 2329794 2330735 D PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: rpc:RPC_3300 cell division protein FtsQ; polypeptide-transport-associated domain-containing protein 2329794..2330735 Rhodopseudomonas palustris BisA53 4358432 YP_781039.1 CDS RPE_2115 NC_008435.1 2330732 2332060 D PFAM: cell division protein FtsA; KEGG: rpc:RPC_3299 cell division protein FtsA; cell division protein FtsA 2330732..2332060 Rhodopseudomonas palustris BisA53 4358433 YP_781040.1 CDS RPE_2116 NC_008435.1 2332154 2333950 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 2332154..2333950 Rhodopseudomonas palustris BisA53 4358434 YP_781041.1 CDS lpxC NC_008435.1 2334295 2335254 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2334295..2335254 Rhodopseudomonas palustris BisA53 4358435 YP_781042.1 CDS RPE_2118 NC_008435.1 2335517 2336422 D KEGG: rpc:RPC_3296 putative lipoprotein; putative lipoprotein 2335517..2336422 Rhodopseudomonas palustris BisA53 4358436 YP_781043.1 CDS RPE_2119 NC_008435.1 2336435 2338117 D TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: rpc:RPC_3295 DNA repair protein RecN; DNA repair protein RecN 2336435..2338117 Rhodopseudomonas palustris BisA53 4358437 YP_781044.1 CDS RPE_2120 NC_008435.1 2338266 2338553 R PFAM: Excinuclease ABC, C subunit domain protein; KEGG: rpd:RPD_3382 excinuclease ABC, C subunit-like; excinuclease ABC subunit C complement(2338266..2338553) Rhodopseudomonas palustris BisA53 4358438 YP_781045.1 CDS RPE_2121 NC_008435.1 2338594 2340786 D KEGG: rpb:RPB_2008 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; NAD-dependent DNA ligase; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase 2338594..2340786 Rhodopseudomonas palustris BisA53 4358439 YP_781046.1 CDS RPE_2122 NC_008435.1 2340942 2342231 R TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rpc:RPC_3292 drug resistance transporter Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter complement(2340942..2342231) Rhodopseudomonas palustris BisA53 4358440 YP_781047.1 CDS RPE_2123 NC_008435.1 2342401 2344230 R PFAM: peptidase M24; KEGG: rpc:RPC_3291 peptidase M24; peptidase M24 complement(2342401..2344230) Rhodopseudomonas palustris BisA53 4358441 YP_781048.1 CDS RPE_2124 NC_008435.1 2344269 2344601 D KEGG: rpd:RPD_3378 hypothetical protein; hypothetical protein 2344269..2344601 Rhodopseudomonas palustris BisA53 4358442 YP_781049.1 CDS RPE_2125 NC_008435.1 2344630 2345514 R PFAM: methyltransferase small; ribosomal L11 methyltransferase; KEGG: rpc:RPC_3290 ribosomal L11 methyltransferase; ribosomal L11 methyltransferase complement(2344630..2345514) Rhodopseudomonas palustris BisA53 4358443 YP_781050.1 CDS RPE_2126 NC_008435.1 2346035 2346631 D PFAM: filamentation induced by cAMP protein Fic; KEGG: rpc:RPC_3396 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 2346035..2346631 Rhodopseudomonas palustris BisA53 4358444 YP_781051.1 CDS RPE_2127 NC_008435.1 2346751 2348361 R PFAM: FAD dependent oxidoreductase; KEGG: rpc:RPC_3288 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(2346751..2348361) Rhodopseudomonas palustris BisA53 4358445 YP_781052.1 CDS RPE_2128 NC_008435.1 2348537 2350816 D KEGG: rpc:RPC_3287 hypothetical protein; hypothetical protein 2348537..2350816 Rhodopseudomonas palustris BisA53 4358446 YP_781053.1 CDS RPE_2129 NC_008435.1 2350959 2351735 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpc:RPC_3286 ErfK/YbiS/YcfS/YnhG; hypothetical protein complement(2350959..2351735) Rhodopseudomonas palustris BisA53 4358447 YP_781054.1 CDS RPE_2130 NC_008435.1 2351987 2352328 D KEGG: rpc:RPC_3285 hypothetical protein; hypothetical protein 2351987..2352328 Rhodopseudomonas palustris BisA53 4358448 YP_781055.1 CDS RPE_2131 NC_008435.1 2352393 2353154 R PFAM: ABC-2 type transporter; KEGG: rpc:RPC_3284 ABC-2; hypothetical protein complement(2352393..2353154) Rhodopseudomonas palustris BisA53 4358449 YP_781056.1 CDS RPE_2132 NC_008435.1 2353156 2354133 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_3283 ABC transporter related; ABC transporter-like protein complement(2353156..2354133) Rhodopseudomonas palustris BisA53 4358450 YP_781057.1 CDS RPE_2133 NC_008435.1 2354170 2354793 D KEGG: rpc:RPC_3282 hypothetical protein; hypothetical protein 2354170..2354793 Rhodopseudomonas palustris BisA53 4358242 YP_781058.1 CDS RPE_2134 NC_008435.1 2354823 2355107 R PFAM: protein of unknown function UPF0150; KEGG: rpc:RPC_3281 protein of unknown function UPF0150; hypothetical protein complement(2354823..2355107) Rhodopseudomonas palustris BisA53 4358243 YP_781059.1 CDS RPE_2135 NC_008435.1 2355148 2355441 R PFAM: protein of unknown function UPF0150; KEGG: rpc:RPC_3280 protein of unknown function UPF0150; hypothetical protein complement(2355148..2355441) Rhodopseudomonas palustris BisA53 4358244 YP_781060.1 CDS RPE_2136 NC_008435.1 2355450 2355644 R PFAM: YcfA family protein; KEGG: rpb:RPB_2021 YcfA-like; hypothetical protein complement(2355450..2355644) Rhodopseudomonas palustris BisA53 4358245 YP_781061.1 CDS RPE_2137 NC_008435.1 2355702 2358242 R PFAM: UvrD/REP helicase; KEGG: rpb:RPB_2023 UvrD/REP helicase; UvrD/REP helicase complement(2355702..2358242) Rhodopseudomonas palustris BisA53 4358246 YP_781062.1 CDS RPE_2138 NC_008435.1 2358526 2358699 D PFAM: protein of unknown function DUF1328; KEGG: bja:bsl6560 hypothetical protein; hypothetical protein 2358526..2358699 Rhodopseudomonas palustris BisA53 4358247 YP_781063.1 CDS RPE_2139 NC_008435.1 2358707 2359231 R KEGG: rpc:RPC_3277 hypothetical protein; hypothetical protein complement(2358707..2359231) Rhodopseudomonas palustris BisA53 4358248 YP_781064.1 CDS RPE_2140 NC_008435.1 2359337 2360755 D PFAM: FAD linked oxidase domain protein; KEGG: rpc:RPC_3276 FAD linked oxidase-like; FAD linked oxidase domain-containing protein 2359337..2360755 Rhodopseudomonas palustris BisA53 4358249 YP_781065.1 CDS RPE_2141 NC_008435.1 2360988 2364554 D PFAM: AsmA family protein; KEGG: rpc:RPC_3274 AsmA; hypothetical protein 2360988..2364554 Rhodopseudomonas palustris BisA53 4358250 YP_781066.1 CDS RPE_2142 NC_008435.1 2364659 2364922 R KEGG: rpc:RPC_3273 hypothetical protein; hypothetical protein complement(2364659..2364922) Rhodopseudomonas palustris BisA53 4358251 YP_781067.1 CDS RPE_2143 NC_008435.1 2364919 2365104 R KEGG: rpc:RPC_3272 hypothetical protein; hypothetical protein complement(2364919..2365104) Rhodopseudomonas palustris BisA53 4358252 YP_781068.1 CDS fumC NC_008435.1 2365370 2366794 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(2365370..2366794) Rhodopseudomonas palustris BisA53 4358253 YP_781069.1 CDS RPE_2145 NC_008435.1 2366867 2367376 R PFAM: protein of unknown function DUF1321; KEGG: rpc:RPC_3270 protein of unknown function DUF1321; hypothetical protein complement(2366867..2367376) Rhodopseudomonas palustris BisA53 4358254 YP_781070.1 CDS RPE_2146 NC_008435.1 2368049 2368549 D PFAM: protein of unknown function DUF1468; KEGG: rpb:RPB_2033 TctB subunit of the tripartite tricarboxylate transport(TTT) family; hypothetical protein 2368049..2368549 Rhodopseudomonas palustris BisA53 4358256 YP_781071.1 CDS RPE_2147 NC_008435.1 2368557 2370074 D PFAM: protein of unknown function DUF112, transmembrane; KEGG: rpc:RPC_3268 protein of unknown function DUF112, transmembrane; hypothetical protein 2368557..2370074 Rhodopseudomonas palustris BisA53 4358257 YP_781072.1 CDS RPE_2148 NC_008435.1 2370174 2371172 D PFAM: Uncharacterized protein UPF0065; KEGG: rpd:RPD_3356 uncharacterized protein UPF0065; hypothetical protein 2370174..2371172 Rhodopseudomonas palustris BisA53 4358258 YP_781073.1 CDS RPE_2149 NC_008435.1 2371332 2371937 D PFAM: thymidylate synthase; KEGG: rpc:RPC_3266 thymidylate synthase; thymidylate synthase 2371332..2371937 Rhodopseudomonas palustris BisA53 4358259 YP_781074.1 CDS RPE_2150 NC_008435.1 2372063 2372965 D PFAM: thymidylate synthase; KEGG: rsp:RSP_0390 thymidylate synthase; thymidylate synthase 2372063..2372965 Rhodopseudomonas palustris BisA53 4358260 YP_781075.1 CDS RPE_2151 NC_008435.1 2373237 2374085 D KEGG: rpb:RPB_3835 hypothetical protein; hypothetical protein 2373237..2374085 Rhodopseudomonas palustris BisA53 4358261 YP_781076.1 CDS RPE_2152 NC_008435.1 2374076 2374672 D hypothetical protein 2374076..2374672 Rhodopseudomonas palustris BisA53 4358262 YP_781077.1 CDS RPE_2153 NC_008435.1 2374702 2377233 R KEGG: bja:bll5745 hypothetical protein; hypothetical protein complement(2374702..2377233) Rhodopseudomonas palustris BisA53 4358263 YP_781078.1 CDS RPE_2154 NC_008435.1 2377422 2378156 R KEGG: rpd:RPD_0005 hypothetical protein; hypothetical protein complement(2377422..2378156) Rhodopseudomonas palustris BisA53 4358264 YP_781079.1 CDS RPE_2155 NC_008435.1 2378243 2378539 R hypothetical protein complement(2378243..2378539) Rhodopseudomonas palustris BisA53 4358265 YP_781080.1 CDS RPE_2156 NC_008435.1 2378780 2379259 D KEGG: rpd:RPD_0009 hypothetical protein; hypothetical protein 2378780..2379259 Rhodopseudomonas palustris BisA53 4358266 YP_781081.1 CDS RPE_2157 NC_008435.1 2379264 2379650 D hypothetical protein 2379264..2379650 Rhodopseudomonas palustris BisA53 4358267 YP_781082.1 CDS RPE_2158 NC_008435.1 2380401 2383046 D hypothetical protein 2380401..2383046 Rhodopseudomonas palustris BisA53 4358268 YP_781083.1 CDS RPE_2159 NC_008435.1 2384611 2385093 D hypothetical protein 2384611..2385093 Rhodopseudomonas palustris BisA53 4358269 YP_781084.1 CDS RPE_2160 NC_008435.1 2385090 2385629 D hypothetical protein 2385090..2385629 Rhodopseudomonas palustris BisA53 4358270 YP_781085.1 CDS RPE_2161 NC_008435.1 2385626 2386069 D hypothetical protein 2385626..2386069 Rhodopseudomonas palustris BisA53 4358271 YP_781086.1 CDS RPE_2162 NC_008435.1 2386132 2387562 D PFAM: phage integrase domain protein SAM domain protein; phage integrase domain/SAM domain-containing protein 2386132..2387562 Rhodopseudomonas palustris BisA53 4358272 YP_781087.1 CDS RPE_2163 NC_008435.1 2387915 2390833 D hypothetical protein 2387915..2390833 Rhodopseudomonas palustris BisA53 4358273 YP_781088.1 CDS RPE_2164 NC_008435.1 2390830 2393691 D PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD/DEAH box helicase domain protein; KEGG: noc:Noc_0063 type III restriction enzyme, res subunit; helicase domain-containing protein 2390830..2393691 Rhodopseudomonas palustris BisA53 4358274 YP_781089.1 CDS RPE_2165 NC_008435.1 2393672 2394637 R hypothetical protein complement(2393672..2394637) Rhodopseudomonas palustris BisA53 4358275 YP_781090.1 CDS RPE_2166 NC_008435.1 2394634 2396355 R KEGG: mca:MCA0729 hypothetical protein; hypothetical protein complement(2394634..2396355) Rhodopseudomonas palustris BisA53 4358276 YP_781091.1 CDS RPE_2167 NC_008435.1 2396355 2402525 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: ava:Ava_3253 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase complement(2396355..2402525) Rhodopseudomonas palustris BisA53 4358277 YP_781092.1 CDS RPE_2168 NC_008435.1 2402749 2403345 R PFAM: sigma-70 region 2 domain protein; sigma-70 region 2 domain-containing protein complement(2402749..2403345) Rhodopseudomonas palustris BisA53 4358278 YP_781093.1 CDS RPE_2169 NC_008435.1 2403533 2405461 R KEGG: ava:Ava_B0306 hypothetical protein; hypothetical protein complement(2403533..2405461) Rhodopseudomonas palustris BisA53 4358279 YP_781094.1 CDS RPE_2170 NC_008435.1 2405755 2407356 D KEGG: ava:Ava_B0306 hypothetical protein; hypothetical protein 2405755..2407356 Rhodopseudomonas palustris BisA53 4358280 YP_781095.1 CDS RPE_2171 NC_008435.1 2407369 2409393 D KEGG: tth:TTC1428 hypothetical protein; hypothetical protein 2407369..2409393 Rhodopseudomonas palustris BisA53 4358281 YP_781096.1 CDS RPE_2172 NC_008435.1 2409501 2411429 R PFAM: peptidase M41; AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: mag:amb1687 ATP-dependent Zn protease; ATPase central domain-containing protein complement(2409501..2411429) Rhodopseudomonas palustris BisA53 4358282 YP_781097.1 CDS RPE_2173 NC_008435.1 2412763 2413068 D hypothetical protein 2412763..2413068 Rhodopseudomonas palustris BisA53 4358283 YP_781098.1 CDS RPE_2174 NC_008435.1 2413520 2413819 D PFAM: thymidylate synthase; KEGG: rpa:RPA3493 thymidylate synthase; thymidylate synthase 2413520..2413819 Rhodopseudomonas palustris BisA53 4358284 YP_781099.1 CDS RPE_2175 NC_008435.1 2413825 2414238 D KEGG: rpc:RPC_3265 hypothetical protein; hypothetical protein 2413825..2414238 Rhodopseudomonas palustris BisA53 4358285 YP_781100.1 CDS RPE_2176 NC_008435.1 2414220 2414627 D hypothetical protein 2414220..2414627 Rhodopseudomonas palustris BisA53 4358286 YP_781101.1 CDS RPE_2177 NC_008435.1 2414634 2415149 D PFAM: dihydrofolate reductase region; KEGG: rpc:RPC_3263 dihydrofolate reductase; dihydrofolate reductase 2414634..2415149 Rhodopseudomonas palustris BisA53 4358287 YP_781102.1 CDS RPE_2178 NC_008435.1 2415307 2416455 D TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: rpc:RPC_3262 HflK protein; HflK protein 2415307..2416455 Rhodopseudomonas palustris BisA53 4358288 YP_781103.1 CDS RPE_2179 NC_008435.1 2416452 2417357 D TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: rpc:RPC_3261 HflC protein; HflC protein 2416452..2417357 Rhodopseudomonas palustris BisA53 4358289 YP_781104.1 CDS RPE_2180 NC_008435.1 2417511 2417711 D KEGG: rpc:RPC_3260 hypothetical protein; hypothetical protein 2417511..2417711 Rhodopseudomonas palustris BisA53 4358290 YP_781105.1 CDS RPE_2181 NC_008435.1 2417907 2419406 D TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rpc:RPC_3259 peptidase S1C, Do; peptidase S1C, Do 2417907..2419406 Rhodopseudomonas palustris BisA53 4358291 YP_781106.1 CDS RPE_2182 NC_008435.1 2419697 2420794 D PFAM: transposase, IS4 family protein; KEGG: rpc:RPC_2070 transposase, IS4; transposase, IS4 family protein 2419697..2420794 Rhodopseudomonas palustris BisA53 4358292 YP_781107.1 CDS RPE_2183 NC_008435.1 2421462 2422004 D KEGG: rpc:RPC_3258 hypothetical protein; hypothetical protein 2421462..2422004 Rhodopseudomonas palustris BisA53 4359540 YP_781108.1 CDS RPE_2184 NC_008435.1 2422192 2422713 D KEGG: rpa:RPA2267 hypothetical protein; hypothetical protein 2422192..2422713 Rhodopseudomonas palustris BisA53 4359541 YP_781109.1 CDS RPE_2185 NC_008435.1 2422735 2423586 R KEGG: rpb:RPB_3347 phosphoserine phosphatase SerB:HAD-superfamily hydrolase subfamily IB, PSPase-like; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoserine phosphatase SerB complement(2422735..2423586) Rhodopseudomonas palustris BisA53 4359542 YP_781110.1 CDS RPE_2186 NC_008435.1 2423621 2424607 D KEGG: rpa:RPA2030 tRNA isopentenyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 2423621..2424607 Rhodopseudomonas palustris BisA53 4359543 YP_781111.1 CDS RPE_2187 NC_008435.1 2425025 2426803 D TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rpa:RPA2031 acetolactate synthase (large subunit); acetolactate synthase 3 catalytic subunit 2425025..2426803 Rhodopseudomonas palustris BisA53 4359544 YP_781112.1 CDS RPE_2188 NC_008435.1 2426839 2427828 D PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: rpc:RPC_3254 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; hypothetical protein 2426839..2427828 Rhodopseudomonas palustris BisA53 4359545 YP_781113.1 CDS ilvH NC_008435.1 2427931 2428473 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2427931..2428473 Rhodopseudomonas palustris BisA53 4359546 YP_781114.1 CDS RPE_2190 NC_008435.1 2428499 2428894 R KEGG: rpc:RPC_3252 putative AtsE; putative AtsE complement(2428499..2428894) Rhodopseudomonas palustris BisA53 4359547 YP_781115.1 CDS RPE_2191 NC_008435.1 2429068 2429412 D PFAM: SpoVT/AbrB domain protein; KEGG: rpc:RPC_3251 transcriptional regulator/antitoxin, MazE; transcriptional regulator/antitoxin MazE 2429068..2429412 Rhodopseudomonas palustris BisA53 4359548 YP_781116.1 CDS RPE_2192 NC_008435.1 2429409 2429750 D PFAM: PemK family protein; KEGG: gka:GK1648 ppGpp-regulated growth inhibitor (ChpA/MazF); transcriptional modulator of MazE/toxin MazF 2429409..2429750 Rhodopseudomonas palustris BisA53 4359549 YP_781117.1 CDS RPE_2195 NC_008435.1 2430906 2431925 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 2430906..2431925 Rhodopseudomonas palustris BisA53 4359551 YP_781118.1 CDS RPE_2196 NC_008435.1 2432315 2433157 D PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bja:bll7569 probable O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 2432315..2433157 Rhodopseudomonas palustris BisA53 4359552 YP_781119.1 CDS RPE_2197 NC_008435.1 2433187 2434038 D PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpc:RPC_3247 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2433187..2434038 Rhodopseudomonas palustris BisA53 4359553 YP_781120.1 CDS RPE_2198 NC_008435.1 2434242 2435945 D PFAM: sulfatase; KEGG: rpc:RPC_3246 sulfatase; sulfatase 2434242..2435945 Rhodopseudomonas palustris BisA53 4359554 YP_781121.1 CDS RPE_2199 NC_008435.1 2436168 2437037 D KEGG: rpc:RPC_3245 hypothetical protein; hypothetical protein 2436168..2437037 Rhodopseudomonas palustris BisA53 4359555 YP_781122.1 CDS RPE_2200 NC_008435.1 2437233 2438573 R PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr2421 MFS permease; major facilitator transporter complement(2437233..2438573) Rhodopseudomonas palustris BisA53 4359556 YP_781123.1 CDS RPE_2201 NC_008435.1 2438729 2440279 R PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: rpc:RPC_3244 substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein complement(2438729..2440279) Rhodopseudomonas palustris BisA53 4359557 YP_781124.1 CDS RPE_2202 NC_008435.1 2440276 2441043 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_2105 ABC transporter related; ABC transporter-like protein complement(2440276..2441043) Rhodopseudomonas palustris BisA53 4359558 YP_781125.1 CDS RPE_2203 NC_008435.1 2441167 2441433 D KEGG: tbd:Tbd_0449 hypothetical protein; hypothetical protein 2441167..2441433 Rhodopseudomonas palustris BisA53 4359559 YP_781126.1 CDS RPE_2204 NC_008435.1 2441430 2441645 D hypothetical protein 2441430..2441645 Rhodopseudomonas palustris BisA53 4359560 YP_781127.1 CDS RPE_2205 NC_008435.1 2441668 2442366 D KEGG: bja:bll6480 hypothetical protein; hypothetical protein 2441668..2442366 Rhodopseudomonas palustris BisA53 4359561 YP_781128.1 CDS RPE_2206 NC_008435.1 2442441 2443430 D PFAM: protein of unknown function DUF344; KEGG: rpc:RPC_3238 protein of unknown function DUF344; hypothetical protein 2442441..2443430 Rhodopseudomonas palustris BisA53 4359562 YP_781129.1 CDS RPE_2207 NC_008435.1 2443480 2443713 R PFAM: SpoVT/AbrB domain protein; KEGG: nmu:Nmul_A0985 transcriptional regulator/antitoxin, MazE; transcriptional regulator/antitoxin MazE complement(2443480..2443713) Rhodopseudomonas palustris BisA53 4359563 YP_781130.1 CDS RPE_2208 NC_008435.1 2443764 2444780 R KEGG: rpd:RPD_2111 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase complement(2443764..2444780) Rhodopseudomonas palustris BisA53 4359564 YP_781131.1 CDS RPE_2209 NC_008435.1 2445263 2446828 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 2445263..2446828 Rhodopseudomonas palustris BisA53 4359565 YP_781132.1 CDS RPE_2210 NC_008435.1 2447007 2448011 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rpa:RPA2047 TrapT family, DctP subunit, C4-dicarboxylate periplasmic binding protein; TRAP dicarboxylate transporter subunit DctP 2447007..2448011 Rhodopseudomonas palustris BisA53 4359566 YP_781133.1 CDS RPE_2211 NC_008435.1 2448137 2448721 D PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rpd:RPD_2114 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 2448137..2448721 Rhodopseudomonas palustris BisA53 4359567 YP_781134.1 CDS RPE_2212 NC_008435.1 2448718 2450043 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpd:RPD_2115 TRAP dicarboxylate transporter-DctM subunit; TRAP C4-dicarboxylate transport system permease DctM 2448718..2450043 Rhodopseudomonas palustris BisA53 4359568 YP_781135.1 CDS RPE_2213 NC_008435.1 2450166 2450750 D KEGG: rpa:RPA2050 hypothetical protein; hypothetical protein 2450166..2450750 Rhodopseudomonas palustris BisA53 4359569 YP_781136.1 CDS RPE_2214 NC_008435.1 2451199 2451555 R hypothetical protein complement(2451199..2451555) Rhodopseudomonas palustris BisA53 4359571 YP_781137.1 CDS RPE_2215 NC_008435.1 2451854 2453104 D PFAM: glycosyl transferase, family 28; KEGG: sth:STH2411 UDP-glucose:sterol glucosyltransferase; glycosyl transferase family protein 2451854..2453104 Rhodopseudomonas palustris BisA53 4359572 YP_781138.1 CDS RPE_2216 NC_008435.1 2453101 2453532 R KEGG: rpd:RPD_0918 hypothetical protein; hypothetical protein complement(2453101..2453532) Rhodopseudomonas palustris BisA53 4359573 YP_781139.1 CDS RPE_2217 NC_008435.1 2453653 2454423 R catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1; uroporphyrin-III C-methyltransferase complement(2453653..2454423) Rhodopseudomonas palustris BisA53 4359574 YP_781140.1 CDS RPE_2218 NC_008435.1 2454420 2455763 R responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase complement(2454420..2455763) Rhodopseudomonas palustris BisA53 4359575 YP_781141.1 CDS RPE_2219 NC_008435.1 2455750 2456529 R KEGG: rpd:RPD_2314 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-4 C(11)-methyltransferase complement(2455750..2456529) Rhodopseudomonas palustris BisA53 4359576 YP_781142.1 CDS RPE_2220 NC_008435.1 2456526 2456921 R KEGG: rpa:RPA2085 cobalamin biosynthesis protein G; CbiG; cobalamin biosynthesis protein CbiG complement(2456526..2456921) Rhodopseudomonas palustris BisA53 4359577 YP_781143.1 CDS RPE_2221 NC_008435.1 2456918 2458141 R KEGG: rpb:RPB_3182 precorrin-6y C5,15-methyltransferase, subunit CbiE; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Methyltransferase type 12; precorrin-6y C5,15-methyltransferase subunit CbiE complement(2456918..2458141) Rhodopseudomonas palustris BisA53 4359578 YP_781144.1 CDS RPE_2222 NC_008435.1 2458245 2458922 D CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 2458245..2458922 Rhodopseudomonas palustris BisA53 4359579 YP_781145.1 CDS RPE_2223 NC_008435.1 2458889 2459665 R TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rpc:RPC_1886 precorrin-3B C17-methyltransferase; precorrin-3B C(17)-methyltransferase complement(2458889..2459665) Rhodopseudomonas palustris BisA53 4359580 YP_781146.1 CDS RPE_2224 NC_008435.1 2459662 2460393 R TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rpc:RPC_1887 precorrin-2 C20-methyltransferase; precorrin-2 C(20)-methyltransferase complement(2459662..2460393) Rhodopseudomonas palustris BisA53 4359581 YP_781147.1 CDS cobH NC_008435.1 2460390 2461019 R catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; precorrin-8X methylmutase complement(2460390..2461019) Rhodopseudomonas palustris BisA53 4359582 YP_781148.1 CDS RPE_2226 NC_008435.1 2461016 2461744 R KEGG: rpc:RPC_1889 cobaltochelatase, CobN subunit; hypothetical protein complement(2461016..2461744) Rhodopseudomonas palustris BisA53 4359583 YP_781149.1 CDS RPE_2227 NC_008435.1 2461830 2462936 R TIGRFAM: CitB domain protein; KEGG: rpc:RPC_1892 citrate utilization protein B; CitB domain-containing protein complement(2461830..2462936) Rhodopseudomonas palustris BisA53 4359584 YP_781150.1 CDS RPE_2228 NC_008435.1 2462923 2464305 R catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase complement(2462923..2464305) Rhodopseudomonas palustris BisA53 4359585 YP_781151.1 CDS RPE_2229 NC_008435.1 2464485 2465549 D PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: rpb:RPB_3282 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2464485..2465549 Rhodopseudomonas palustris BisA53 4359586 YP_781152.1 CDS RPE_2230 NC_008435.1 2465546 2466304 D catalyzes the formation of precorrin 6x from precorrin 5; precorrin 6A synthase 2465546..2466304 Rhodopseudomonas palustris BisA53 4359587 YP_781153.1 CDS RPE_2231 NC_008435.1 2466486 2467163 R KEGG: rru:Rru_A0458 hypothetical protein; hypothetical protein complement(2466486..2467163) Rhodopseudomonas palustris BisA53 4359588 YP_781154.1 CDS RPE_2232 NC_008435.1 2467207 2467917 R KEGG: rpd:RPD_0641 Cob(II)yrinic acid a,c-diamide reductase; TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; Cob(II)yrinic acid a,c-diamide reductase complement(2467207..2467917) Rhodopseudomonas palustris BisA53 4359589 YP_781155.1 CDS RPE_2233 NC_008435.1 2468641 2469084 D PFAM: protein of unknown function DUF1636; KEGG: rpb:RPB_0741 protein of unknown function DUF1636; hypothetical protein 2468641..2469084 Rhodopseudomonas palustris BisA53 4359590 YP_781156.1 CDS RPE_2234 NC_008435.1 2469081 2469617 D PFAM: cobalbumin biosynthesis enzyme; KEGG: rpc:RPC_3747 cobalbumin biosynthesis enzyme; adenosylcobinamide kinase 2469081..2469617 Rhodopseudomonas palustris BisA53 4359591 YP_781157.1 CDS RPE_2235 NC_008435.1 2469774 2470796 D TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: rpd:RPD_0637 cobalamin (vitamin B12) biosynthesis CobW; cobalamin biosynthesis protein CobW 2469774..2470796 Rhodopseudomonas palustris BisA53 4359296 YP_781158.1 CDS cobN NC_008435.1 2470947 2474777 D with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; cobaltochelatase subunit CobN 2470947..2474777 Rhodopseudomonas palustris BisA53 4359297 YP_781159.1 CDS RPE_2237 NC_008435.1 2474774 2475397 D catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 2474774..2475397 Rhodopseudomonas palustris BisA53 4359298 YP_781160.1 CDS RPE_2238 NC_008435.1 2475864 2477351 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 2475864..2477351 Rhodopseudomonas palustris BisA53 4359299 YP_781161.1 CDS RPE_2239 NC_008435.1 2477324 2478295 R TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: rpc:RPC_3744 cobalamin biosynthesis protein CobD; cobalamin biosynthesis protein CobD complement(2477324..2478295) Rhodopseudomonas palustris BisA53 4359300 YP_781162.1 CDS RPE_2240 NC_008435.1 2478331 2479350 D PFAM: aminotransferase, class I and II; KEGG: rpc:RPC_3743 aminotransferase, class I and II; class I and II aminotransferase 2478331..2479350 Rhodopseudomonas palustris BisA53 4359301 YP_781163.1 CDS RPE_2241 NC_008435.1 2479337 2479654 R hypothetical protein complement(2479337..2479654) Rhodopseudomonas palustris BisA53 4359302 YP_781164.1 CDS RPE_2242 NC_008435.1 2479872 2481227 D KEGG: rpc:RPC_3217 hypothetical protein; hypothetical protein 2479872..2481227 Rhodopseudomonas palustris BisA53 4359303 YP_781165.1 CDS RPE_2243 NC_008435.1 2481232 2482092 D KEGG: rpc:RPC_3216 hypothetical protein; hypothetical protein 2481232..2482092 Rhodopseudomonas palustris BisA53 4359304 YP_781166.1 CDS RPE_2244 NC_008435.1 2482117 2482914 R KEGG: rpb:RPB_2180 hypothetical protein; hypothetical protein complement(2482117..2482914) Rhodopseudomonas palustris BisA53 4359305 YP_781167.1 CDS RPE_2245 NC_008435.1 2483098 2483514 D KEGG: rpc:RPC_3214 hypothetical protein; hypothetical protein 2483098..2483514 Rhodopseudomonas palustris BisA53 4359306 YP_781168.1 CDS RPE_2246 NC_008435.1 2483582 2485708 R PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_3208 periplasmic sensor hybrid histidine kinase; periplasmic sensor hybrid histidine kinase complement(2483582..2485708) Rhodopseudomonas palustris BisA53 4359307 YP_781169.1 CDS RPE_2247 NC_008435.1 2485939 2486253 D KEGG: rpc:RPC_3207 putative cytochrome c precursor; putative cytochrome c 2485939..2486253 Rhodopseudomonas palustris BisA53 4359308 YP_781170.1 CDS RPE_2248 NC_008435.1 2486382 2487521 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpb:RPB_3267 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 2486382..2487521 Rhodopseudomonas palustris BisA53 4359309 YP_781171.1 CDS RPE_2249 NC_008435.1 2487648 2488811 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpb:RPB_3266 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 2487648..2488811 Rhodopseudomonas palustris BisA53 4359310 YP_781172.1 CDS RPE_2250 NC_008435.1 2489002 2489652 D PFAM: Glutathione S-transferase, N-terminal domain; KEGG: rpd:RPD_2200 glutathione S-transferase-like; glutathione S-transferase 2489002..2489652 Rhodopseudomonas palustris BisA53 4359311 YP_781173.1 CDS RPE_2251 NC_008435.1 2489770 2490591 D SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: rpc:RPC_3204 transcriptional regulator, AraC family; AraC family transcriptional regulator 2489770..2490591 Rhodopseudomonas palustris BisA53 4359312 YP_781174.1 CDS RPE_2252 NC_008435.1 2490717 2491583 D PFAM: protein of unknown function DUF849; KEGG: rpa:RPA2141 hypothetical protein; hypothetical protein 2490717..2491583 Rhodopseudomonas palustris BisA53 4359313 YP_781175.1 CDS RPE_2253 NC_008435.1 2491690 2493291 D PFAM: AMP-dependent synthetase and ligase; KEGG: rpb:RPB_3261 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2491690..2493291 Rhodopseudomonas palustris BisA53 4359314 YP_781176.1 CDS RPE_2254 NC_008435.1 2493426 2495045 D PFAM: carboxyl transferase; KEGG: rpc:RPC_3201 propionyl-CoA carboxylase; propionyl-CoA carboxylase 2493426..2495045 Rhodopseudomonas palustris BisA53 4359315 YP_781177.1 CDS RPE_2255 NC_008435.1 2495042 2497057 D PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rpd:RPD_2205 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase subunit L 2495042..2497057 Rhodopseudomonas palustris BisA53 4359316 YP_781178.1 CDS RPE_2256 NC_008435.1 2497089 2497868 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2497089..2497868 Rhodopseudomonas palustris BisA53 4359317 YP_781179.1 CDS RPE_2257 NC_008435.1 2498150 2499604 D KEGG: rpd:RPD_2208 hypothetical protein; hypothetical protein 2498150..2499604 Rhodopseudomonas palustris BisA53 4359318 YP_781180.1 CDS RPE_2258 NC_008435.1 2499612 2500865 R PFAM: beta-lactamase; KEGG: rpa:RPA2148 beta-lactamase; beta-lactamase complement(2499612..2500865) Rhodopseudomonas palustris BisA53 4359319 YP_781181.1 CDS RPE_2259 NC_008435.1 2501178 2502116 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: rpc:RPC_3194 protein of unknown function DUF6, transmembrane; hypothetical protein 2501178..2502116 Rhodopseudomonas palustris BisA53 4359320 YP_781182.1 CDS RPE_2260 NC_008435.1 2502231 2503661 D PFAM: aldehyde dehydrogenase; KEGG: rpd:RPD_2215 aldehyde dehydrogenase; aldehyde dehydrogenase 2502231..2503661 Rhodopseudomonas palustris BisA53 4359321 YP_781183.1 CDS RPE_2261 NC_008435.1 2504136 2505842 D catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 2504136..2505842 Rhodopseudomonas palustris BisA53 4359322 YP_781184.1 CDS RPE_2262 NC_008435.1 2505857 2506135 R KEGG: rpc:RPC_3190 hypothetical protein; hypothetical protein complement(2505857..2506135) Rhodopseudomonas palustris BisA53 4359323 YP_781185.1 CDS RPE_2263 NC_008435.1 2506381 2506662 D KEGG: rpa:RPA2158 hypothetical protein; hypothetical protein 2506381..2506662 Rhodopseudomonas palustris BisA53 4359324 YP_781186.1 CDS RPE_2264 NC_008435.1 2506928 2508082 D KEGG: rpc:RPC_3188 hypothetical protein; hypothetical protein 2506928..2508082 Rhodopseudomonas palustris BisA53 4359325 YP_781187.1 CDS RPE_2265 NC_008435.1 2508321 2509058 D hypothetical protein 2508321..2509058 Rhodopseudomonas palustris BisA53 4359326 YP_781188.1 CDS RPE_2266 NC_008435.1 2509152 2510366 D KEGG: rpc:RPC_0609 hypothetical protein; hypothetical protein 2509152..2510366 Rhodopseudomonas palustris BisA53 4359327 YP_781189.1 CDS RPE_2267 NC_008435.1 2510430 2510882 R KEGG: rpd:RPD_2221 hypothetical protein; hypothetical protein complement(2510430..2510882) Rhodopseudomonas palustris BisA53 4359328 YP_781190.1 CDS RPE_2268 NC_008435.1 2510942 2511586 R KEGG: pcr:Pcryo_2512 hypothetical protein; hypothetical protein complement(2510942..2511586) Rhodopseudomonas palustris BisA53 4359329 YP_781191.1 CDS RPE_2269 NC_008435.1 2511583 2512722 R KEGG: sth:STH2171 hypothetical protein; hypothetical protein complement(2511583..2512722) Rhodopseudomonas palustris BisA53 4359330 YP_781192.1 CDS RPE_2270 NC_008435.1 2513144 2513581 D KEGG: rpc:RPC_1244 hypothetical protein; hypothetical protein 2513144..2513581 Rhodopseudomonas palustris BisA53 4359331 YP_781193.1 CDS RPE_2271 NC_008435.1 2513708 2514460 R PFAM: short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: rpd:RPD_2222 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2513708..2514460) Rhodopseudomonas palustris BisA53 4359332 YP_781194.1 CDS RPE_2272 NC_008435.1 2514541 2514867 D PFAM: regulatory protein, ArsR; KEGG: rpd:RPD_2223 regulatory protein, ArsR; ArsR family transcriptional regulator 2514541..2514867 Rhodopseudomonas palustris BisA53 4359333 YP_781195.1 CDS RPE_2273 NC_008435.1 2514905 2516773 R hypothetical protein complement(2514905..2516773) Rhodopseudomonas palustris BisA53 4359334 YP_781196.1 CDS RPE_2274 NC_008435.1 2517445 2517768 D PFAM: regulatory protein, ArsR; KEGG: rpd:RPD_2223 regulatory protein, ArsR; ArsR family transcriptional regulator 2517445..2517768 Rhodopseudomonas palustris BisA53 4359335 YP_781197.1 CDS RPE_2275 NC_008435.1 2517916 2521119 R PFAM: peptidase C14, caspase catalytic subunit p20; KEGG: rpc:RPC_3182 peptidase C14, caspase catalytic subunit P20; peptidase C14, caspase catalytic subunit p20 complement(2517916..2521119) Rhodopseudomonas palustris BisA53 4359336 YP_781198.1 CDS RPE_2276 NC_008435.1 2521642 2522106 R PFAM: regulatory protein, MarR; KEGG: rpc:RPC_3178 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(2521642..2522106) Rhodopseudomonas palustris BisA53 4359337 YP_781199.1 CDS RPE_2277 NC_008435.1 2522232 2523053 D PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_3177 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2522232..2523053 Rhodopseudomonas palustris BisA53 4359338 YP_781200.1 CDS RPE_2278 NC_008435.1 2523106 2523873 D PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_3176 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2523106..2523873 Rhodopseudomonas palustris BisA53 4359339 YP_781201.1 CDS RPE_2279 NC_008435.1 2524086 2524373 D PFAM: Excinuclease ABC, C subunit domain protein; KEGG: rpc:RPC_3180 excinuclease ABC, C subunit-like; excinuclease ABC subunit C 2524086..2524373 Rhodopseudomonas palustris BisA53 4359340 YP_781202.1 CDS RPE_2280 NC_008435.1 2524576 2525196 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_2940 methyltransferase type 11; type 11 methyltransferase 2524576..2525196 Rhodopseudomonas palustris BisA53 4359341 YP_781203.1 CDS RPE_2281 NC_008435.1 2525330 2525749 D PFAM: Excinuclease ABC, C subunit domain protein; KEGG: rpc:RPC_3180 excinuclease ABC, C subunit-like; excinuclease ABC subunit C 2525330..2525749 Rhodopseudomonas palustris BisA53 4359342 YP_781204.1 CDS RPE_2282 NC_008435.1 2525999 2526604 R TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein; KEGG: rpd:RPD_2224 YgfB and YecA; yecA family protein complement(2525999..2526604) Rhodopseudomonas palustris BisA53 4359343 YP_781205.1 CDS groEL NC_008435.1 2527104 2528744 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is co-regulated with symbiotic nitrogen fixation genes; chaperonin GroEL complement(2527104..2528744) Rhodopseudomonas palustris BisA53 4359344 YP_781206.1 CDS groES NC_008435.1 2528850 2529164 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(2528850..2529164) Rhodopseudomonas palustris BisA53 4359345 YP_781207.1 CDS RPE_2285 NC_008435.1 2529483 2529782 D PFAM: Usg family protein; KEGG: rpb:RPB_3232 hypothetical protein; hypothetical protein 2529483..2529782 Rhodopseudomonas palustris BisA53 4359346 YP_781208.1 CDS RPE_2286 NC_008435.1 2529850 2530113 D KEGG: rpd:RPD_2230 hypothetical protein; hypothetical protein 2529850..2530113 Rhodopseudomonas palustris BisA53 4359347 YP_781209.1 CDS RPE_2287 NC_008435.1 2530141 2530797 D KEGG: rpc:RPC_3168 hypothetical protein; hypothetical protein 2530141..2530797 Rhodopseudomonas palustris BisA53 4359106 YP_781210.1 CDS RPE_2288 NC_008435.1 2530801 2532051 R PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: rpc:RPC_3167 Na+ dependent nucleoside transporter-like; Na+ dependent nucleoside transporter complement(2530801..2532051) Rhodopseudomonas palustris BisA53 4359107 YP_781211.1 CDS RPE_2289 NC_008435.1 2532277 2534466 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_3798 multi-sensor hybrid histidine kinase; periplasmic sensor hybrid histidine kinase 2532277..2534466 Rhodopseudomonas palustris BisA53 4359108 YP_781212.1 CDS RPE_2290 NC_008435.1 2534710 2535927 R PFAM: acyltransferase 3; KEGG: bja:bll7034 MDO-like protein; acyltransferase 3 complement(2534710..2535927) Rhodopseudomonas palustris BisA53 4359109 YP_781213.1 CDS RPE_2291 NC_008435.1 2536165 2536923 R PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpc:RPC_3165 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2536165..2536923) Rhodopseudomonas palustris BisA53 4359110 YP_781214.1 CDS RPE_2293 NC_008435.1 2537677 2538717 D PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rpc:RPC_4622 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 2537677..2538717 Rhodopseudomonas palustris BisA53 4359112 YP_781215.1 CDS RPE_2294 NC_008435.1 2539074 2539820 R KEGG: rpc:RPC_3163 putative proteasome-type protease; putative proteasome-type protease complement(2539074..2539820) Rhodopseudomonas palustris BisA53 4359113 YP_781216.1 CDS RPE_2295 NC_008435.1 2539908 2540756 R PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: rpc:RPC_3159 transglutaminase-like; transglutaminase domain-containing protein complement(2539908..2540756) Rhodopseudomonas palustris BisA53 4359114 YP_781217.1 CDS RPE_2296 NC_008435.1 2540806 2541750 R PFAM: protein of unknown function DUF403; KEGG: rpc:RPC_3158 protein of unknown function DUF403; hypothetical protein complement(2540806..2541750) Rhodopseudomonas palustris BisA53 4359115 YP_781218.1 CDS RPE_2297 NC_008435.1 2541860 2543377 R PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rpc:RPC_3157 protein of unknown function DUF404; hypothetical protein complement(2541860..2543377) Rhodopseudomonas palustris BisA53 4359116 YP_781219.1 CDS RPE_2298 NC_008435.1 2543499 2544236 D PFAM: molybdopterin binding domain; KEGG: rpc:RPC_3156 molybdopterin binding domain; molybdopterin binding domain-containing protein 2543499..2544236 Rhodopseudomonas palustris BisA53 4359117 YP_781220.1 CDS RPE_2299 NC_008435.1 2544250 2544768 D catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 2544250..2544768 Rhodopseudomonas palustris BisA53 4359118 YP_781221.1 CDS RPE_2300 NC_008435.1 2545050 2545667 D KEGG: rpd:RPD_2244 hypothetical protein; hypothetical protein 2545050..2545667 Rhodopseudomonas palustris BisA53 4359119 YP_781222.1 CDS RPE_2301 NC_008435.1 2545818 2546840 R catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(2545818..2546840) Rhodopseudomonas palustris BisA53 4359120 YP_781223.1 CDS RPE_2302 NC_008435.1 2546995 2547705 D PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: rpa:RPA2182 putative glutathione S-transferase; glutathione S-transferase 2546995..2547705 Rhodopseudomonas palustris BisA53 4359121 YP_781224.1 CDS RPE_2303 NC_008435.1 2547869 2548552 D PFAM: DSBA oxidoreductase; KEGG: rpb:RPB_3208 DsbA oxidoreductase; DSBA oxidoreductase 2547869..2548552 Rhodopseudomonas palustris BisA53 4359122 YP_781225.1 CDS RPE_2304 NC_008435.1 2548552 2549529 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpd:RPD_2248 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 2548552..2549529 Rhodopseudomonas palustris BisA53 4359123 YP_781226.1 CDS RPE_2305 NC_008435.1 2549722 2550612 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(2549722..2550612) Rhodopseudomonas palustris BisA53 4359124 YP_781227.1 CDS RPE_2306 NC_008435.1 2551755 2552165 D KEGG: rpc:RPC_3150 hypothetical protein; hypothetical protein 2551755..2552165 Rhodopseudomonas palustris BisA53 4359126 YP_781228.1 CDS RPE_2307 NC_008435.1 2552185 2553378 R PFAM: monooxygenase, FAD-binding; KEGG: rpc:RPC_3149 monooxygenase, FAD-binding; salicylate 1-monooxygenase complement(2552185..2553378) Rhodopseudomonas palustris BisA53 4359127 YP_781229.1 CDS RPE_2308 NC_008435.1 2553385 2553630 R KEGG: rpc:RPC_3148 hypothetical protein; hypothetical protein complement(2553385..2553630) Rhodopseudomonas palustris BisA53 4359128 YP_781230.1 CDS RPE_2309 NC_008435.1 2553843 2555021 D KEGG: rpc:RPC_3147 hypothetical protein; hypothetical protein 2553843..2555021 Rhodopseudomonas palustris BisA53 4359129 YP_781231.1 CDS RPE_2310 NC_008435.1 2555062 2555826 D PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_3146 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2555062..2555826 Rhodopseudomonas palustris BisA53 4359130 YP_781232.1 CDS RPE_2311 NC_008435.1 2555784 2557193 R KEGG: rpc:RPC_3145 hypothetical protein; hypothetical protein complement(2555784..2557193) Rhodopseudomonas palustris BisA53 4359131 YP_781233.1 CDS RPE_2312 NC_008435.1 2557443 2558270 D KEGG: rpc:RPC_3144 serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine acetyltransferase domain protein; serine O-acetyltransferase 2557443..2558270 Rhodopseudomonas palustris BisA53 4359132 YP_781234.1 CDS RPE_2313 NC_008435.1 2558415 2558633 D KEGG: rpd:RPD_3287 hypothetical protein; hypothetical protein 2558415..2558633 Rhodopseudomonas palustris BisA53 4359133 YP_781235.1 CDS RPE_2314 NC_008435.1 2558651 2559364 R KEGG: rpc:RPC_3142 hypothetical protein; hypothetical protein complement(2558651..2559364) Rhodopseudomonas palustris BisA53 4359134 YP_781236.1 CDS RPE_2315 NC_008435.1 2559557 2559886 D KEGG: nwi:Nwi_2173 hypothetical protein; hypothetical protein 2559557..2559886 Rhodopseudomonas palustris BisA53 4359135 YP_781237.1 CDS RPE_2316 NC_008435.1 2559965 2560495 D KEGG: rpc:RPC_3140 hypothetical protein; hypothetical protein 2559965..2560495 Rhodopseudomonas palustris BisA53 4359136 YP_781238.1 CDS RPE_2317 NC_008435.1 2560524 2560682 R KEGG: rpc:RPC_3139 hypothetical protein; hypothetical protein complement(2560524..2560682) Rhodopseudomonas palustris BisA53 4359137 YP_781239.1 CDS RPE_2318 NC_008435.1 2560679 2560897 R KEGG: bja:blr5580 hypothetical protein; hypothetical protein complement(2560679..2560897) Rhodopseudomonas palustris BisA53 4359138 YP_781240.1 CDS RPE_2319 NC_008435.1 2561096 2562574 R PFAM: porin; KEGG: rpc:RPC_2891 putative Omp2b porin; porin complement(2561096..2562574) Rhodopseudomonas palustris BisA53 4359139 YP_781241.1 CDS RPE_2320 NC_008435.1 2563187 2563744 D PFAM: regulatory protein, MarR; KEGG: rpc:RPC_3135 transcriptional regulator, MarR family; MarR family transcriptional regulator 2563187..2563744 Rhodopseudomonas palustris BisA53 4359140 YP_781242.1 CDS RPE_2321 NC_008435.1 2563767 2564009 D hypothetical protein 2563767..2564009 Rhodopseudomonas palustris BisA53 4359141 YP_781243.1 CDS RPE_2322 NC_008435.1 2563990 2564259 D hypothetical protein 2563990..2564259 Rhodopseudomonas palustris BisA53 4359142 YP_781244.1 CDS RPE_2323 NC_008435.1 2564252 2564923 R PFAM: autoinducer synthesis protein; KEGG: bja:blr1063 putative autoinducer synthase; autoinducer synthesis protein complement(2564252..2564923) Rhodopseudomonas palustris BisA53 4359143 YP_781245.1 CDS RPE_2324 NC_008435.1 2565017 2565757 R PFAM: regulatory protein, LuxR; Autoinducer-binding domain protein; KEGG: bja:blr1062 transcriptional regulatory protein; LuxR family transcriptional regulator complement(2565017..2565757) Rhodopseudomonas palustris BisA53 4359144 YP_781246.1 CDS RPE_2325 NC_008435.1 2566197 2566820 R PFAM: transglutaminase family protein cysteine peptidase, BTLCP; KEGG: rpc:RPC_3134 transglutaminase-like cysteine peptidase, BTLCP; transglutaminase-like cysteine peptidase, BTLCP complement(2566197..2566820) Rhodopseudomonas palustris BisA53 4359145 YP_781247.1 CDS RPE_2326 NC_008435.1 2567151 2567819 R PFAM: type IV pilus assembly PilZ; KEGG: rpc:RPC_3133 type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(2567151..2567819) Rhodopseudomonas palustris BisA53 4359146 YP_781248.1 CDS RPE_2328 NC_008435.1 2570083 2570814 D PFAM: cyclic nucleotide-binding; KEGG: rpc:RPC_3375 cyclic nucleotide-binding domain (cNMP-BD) protein; cyclic nucleotide-binding protein 2570083..2570814 Rhodopseudomonas palustris BisA53 4359148 YP_781249.1 CDS RPE_2329 NC_008435.1 2570827 2571375 R KEGG: nha:Nham_1646 hypothetical protein; hypothetical protein complement(2570827..2571375) Rhodopseudomonas palustris BisA53 4359149 YP_781250.1 CDS RPE_2330 NC_008435.1 2571888 2572643 D PFAM: Rhomboid family protein; KEGG: rpc:RPC_3129 rhomboid-like protein; rhomboid-like protein 2571888..2572643 Rhodopseudomonas palustris BisA53 4359150 YP_781251.1 CDS RPE_2331 NC_008435.1 2572872 2573300 D PFAM: CBS domain containing protein; KEGG: rpc:RPC_3128 putative signal-transduction protein with CBS domains; signal-transduction protein 2572872..2573300 Rhodopseudomonas palustris BisA53 4359151 YP_781252.1 CDS RPE_2332 NC_008435.1 2573324 2574346 R PFAM: Patatin; KEGG: rpc:RPC_3127 patatin; patatin complement(2573324..2574346) Rhodopseudomonas palustris BisA53 4359152 YP_781253.1 CDS RPE_2333 NC_008435.1 2574536 2575609 D KEGG: rpc:RPC_3126 hypothetical protein; hypothetical protein 2574536..2575609 Rhodopseudomonas palustris BisA53 4359153 YP_781254.1 CDS RPE_2334 NC_008435.1 2575821 2578325 D KEGG: rpc:RPC_3125 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2575821..2578325 Rhodopseudomonas palustris BisA53 4359154 YP_781255.1 CDS RPE_2335 NC_008435.1 2578330 2578893 R PFAM: nitroreductase; KEGG: bja:blr5540 hypothetical protein; nitroreductase complement(2578330..2578893) Rhodopseudomonas palustris BisA53 4359155 YP_781256.1 CDS RPE_2336 NC_008435.1 2579070 2579288 R KEGG: rpc:RPC_3122 hypothetical protein; hypothetical protein complement(2579070..2579288) Rhodopseudomonas palustris BisA53 4359156 YP_781257.1 CDS thrS NC_008435.1 2579285 2581324 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(2579285..2581324) Rhodopseudomonas palustris BisA53 4359157 YP_781258.1 CDS RPE_2338 NC_008435.1 2581531 2582580 R hypothetical protein complement(2581531..2582580) Rhodopseudomonas palustris BisA53 4359192 YP_781259.1 CDS RPE_2339 NC_008435.1 2582768 2583892 D PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll5536 major facilitator superfamily transporter; major facilitator transporter 2582768..2583892 Rhodopseudomonas palustris BisA53 4359193 YP_781260.1 CDS RPE_2340 NC_008435.1 2583922 2584584 R PFAM: O-methyltransferase, family 3; KEGG: rpa:RPA3404 putative O-methyltransferase; O-methyltransferase family protein complement(2583922..2584584) Rhodopseudomonas palustris BisA53 4359194 YP_781261.1 CDS RPE_2341 NC_008435.1 2584677 2585309 D PFAM: regulatory protein, TetR; KEGG: rpa:RPA3403 possible transcriptional regulator, TetR family; TetR family transcriptional regulator 2584677..2585309 Rhodopseudomonas palustris BisA53 4359195 YP_781262.1 CDS RPE_2342 NC_008435.1 2585302 2585721 D KEGG: rpa:RPA3402 hypothetical protein; hypothetical protein 2585302..2585721 Rhodopseudomonas palustris BisA53 4359196 YP_781263.1 CDS RPE_2343 NC_008435.1 2585718 2586047 R PFAM: protein of unknown function DUF37; KEGG: rpc:RPC_3117 protein of unknown function DUF37; hypothetical protein complement(2585718..2586047) Rhodopseudomonas palustris BisA53 4359197 YP_781264.1 CDS RPE_2344 NC_008435.1 2586157 2587215 D KEGG: rpc:RPC_3116 hypothetical protein; hypothetical protein 2586157..2587215 Rhodopseudomonas palustris BisA53 4359198 YP_781265.1 CDS RPE_2345 NC_008435.1 2587331 2587993 D KEGG: gvi:glr0057 unknown protein; hypothetical protein 2587331..2587993 Rhodopseudomonas palustris BisA53 4359199 YP_781266.1 CDS RPE_2346 NC_008435.1 2587993 2588286 D hypothetical protein 2587993..2588286 Rhodopseudomonas palustris BisA53 4359200 YP_781267.1 CDS RPE_2347 NC_008435.1 2588299 2588778 R PFAM: nitrogen-fixing NifU domain protein; KEGG: rpc:RPC_3115 nitrogen-fixing NifU-like; NifU domain-containing protein complement(2588299..2588778) Rhodopseudomonas palustris BisA53 4359201 YP_781268.1 CDS folE NC_008435.1 2589017 2589697 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 2589017..2589697 Rhodopseudomonas palustris BisA53 4359202 YP_781269.1 CDS hisI NC_008435.1 2589916 2590359 D PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 2589916..2590359 Rhodopseudomonas palustris BisA53 4359203 YP_781270.1 CDS RPE_2350 NC_008435.1 2590389 2590754 R PFAM: cytochrome b5; KEGG: rpc:RPC_1930 cytochrome b5; cytochrome b5 complement(2590389..2590754) Rhodopseudomonas palustris BisA53 4359204 YP_781271.1 CDS RPE_2351 NC_008435.1 2590751 2592016 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: rpc:RPC_1929 ferric reductase-like transmembrane component-like; ferric reductase domain-containing protein complement(2590751..2592016) Rhodopseudomonas palustris BisA53 4359205 YP_781272.1 CDS RPE_2352 NC_008435.1 2592022 2592327 R KEGG: rpc:RPC_1928 hypothetical protein; hypothetical protein complement(2592022..2592327) Rhodopseudomonas palustris BisA53 4359206 YP_781273.1 CDS RPE_2353 NC_008435.1 2592453 2593124 R KEGG: rpc:RPC_3112 hypothetical protein; hypothetical protein complement(2592453..2593124) Rhodopseudomonas palustris BisA53 4359207 YP_781274.1 CDS RPE_2354 NC_008435.1 2593343 2594392 D KEGG: rpc:RPC_3111 hypothetical protein; hypothetical protein 2593343..2594392 Rhodopseudomonas palustris BisA53 4359208 YP_781275.1 CDS RPE_2355 NC_008435.1 2594899 2596074 D KEGG: rpc:RPC_3110 hypothetical protein; hypothetical protein 2594899..2596074 Rhodopseudomonas palustris BisA53 4359209 YP_781276.1 CDS RPE_2356 NC_008435.1 2596337 2596915 R PFAM: Hpt domain protein; KEGG: rpc:RPC_3109 Hpt domain protein; Hpt protein complement(2596337..2596915) Rhodopseudomonas palustris BisA53 4359210 YP_781277.1 CDS RPE_2357 NC_008435.1 2596933 2597478 R PFAM: response regulator receiver; KEGG: rpc:RPC_3108 response regulator receiver domain protein (CheY-like); response regulator receiver protein complement(2596933..2597478) Rhodopseudomonas palustris BisA53 4359211 YP_781278.1 CDS RPE_2358 NC_008435.1 2597754 2599517 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: rpb:RPB_4125 diguanylate cyclase; diguanylate cyclase 2597754..2599517 Rhodopseudomonas palustris BisA53 4359212 YP_781279.1 CDS ppnK NC_008435.1 2599751 2600530 R catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase complement(2599751..2600530) Rhodopseudomonas palustris BisA53 4359213 YP_781280.1 CDS RPE_2360 NC_008435.1 2600648 2601208 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:blr5512 hypothetical protein; TPR repeat-containing protein complement(2600648..2601208) Rhodopseudomonas palustris BisA53 4359214 YP_781281.1 CDS RPE_2361 NC_008435.1 2601410 2601823 D KEGG: nwi:Nwi_1336 hypothetical protein; hypothetical protein 2601410..2601823 Rhodopseudomonas palustris BisA53 4359215 YP_781282.1 CDS RPE_2362 NC_008435.1 2601979 2602686 D PFAM: OmpA domain protein transmembrane region-containing protein; porin; KEGG: rpc:RPC_3103 OmpA-like transmembrane region; OmpA domain-containing protein 2601979..2602686 Rhodopseudomonas palustris BisA53 4359216 YP_781283.1 CDS RPE_2363 NC_008435.1 2603270 2603479 D PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: rpa:RPA3399 cold shock DNA binding protein; cold-shock DNA-binding domain-containing protein 2603270..2603479 Rhodopseudomonas palustris BisA53 4359217 YP_781284.1 CDS RPE_2364 NC_008435.1 2603579 2603818 D KEGG: rpa:RPA3400 hypothetical protein; hypothetical protein 2603579..2603818 Rhodopseudomonas palustris BisA53 4359218 YP_781285.1 CDS RPE_2365 NC_008435.1 2603851 2604051 D KEGG: rpb:RPB_2174 hypothetical protein; hypothetical protein 2603851..2604051 Rhodopseudomonas palustris BisA53 4359219 YP_781286.1 CDS RPE_2366 NC_008435.1 2604194 2604544 R hypothetical protein complement(2604194..2604544) Rhodopseudomonas palustris BisA53 4359220 YP_781287.1 CDS RPE_2367 NC_008435.1 2604669 2605868 R PFAM: protein of unknown function DUF303, acetylesterase putative; KEGG: ret:RHE_CH02651 hypothetical protein; hypothetical protein complement(2604669..2605868) Rhodopseudomonas palustris BisA53 4359221 YP_781288.1 CDS RPE_2368 NC_008435.1 2605956 2607371 D KEGG: ana:alr2841 unknown protein; hypothetical protein 2605956..2607371 Rhodopseudomonas palustris BisA53 4359222 YP_781289.1 CDS RPE_2369 NC_008435.1 2607390 2608451 R PFAM: acyltransferase 3; KEGG: bur:Bcep18194_B1814 acyltransferase 3; acyltransferase 3 complement(2607390..2608451) Rhodopseudomonas palustris BisA53 4359223 YP_781290.1 CDS RPE_2370 NC_008435.1 2609090 2609551 D KEGG: rpc:RPC_3102 hypothetical protein; hypothetical protein 2609090..2609551 Rhodopseudomonas palustris BisA53 4359225 YP_781291.1 CDS RPE_2371 NC_008435.1 2609581 2610087 D KEGG: rpc:RPC_3101 hypothetical protein; hypothetical protein 2609581..2610087 Rhodopseudomonas palustris BisA53 4359226 YP_781292.1 CDS RPE_2372 NC_008435.1 2610272 2611438 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 2610272..2611438 Rhodopseudomonas palustris BisA53 4359227 YP_781293.1 CDS RPE_2373 NC_008435.1 2611466 2612995 D PFAM: AMP-dependent synthetase and ligase; KEGG: rpa:RPA3465 putative long-chain-fatty-acid CoA ligase; AMP-dependent synthetase and ligase 2611466..2612995 Rhodopseudomonas palustris BisA53 4359228 YP_781294.1 CDS RPE_2374 NC_008435.1 2613139 2614473 R KEGG: rpb:RPB_2103 hypothetical protein; hypothetical protein complement(2613139..2614473) Rhodopseudomonas palustris BisA53 4359229 YP_781295.1 CDS RPE_2375 NC_008435.1 2614572 2616656 D PFAM: CoA-binding domain protein; KEGG: rpd:RPD_3312 CoA-binding; CoA-binding domain-containing protein 2614572..2616656 Rhodopseudomonas palustris BisA53 4359230 YP_781296.1 CDS RPE_2376 NC_008435.1 2616733 2617608 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpc:RPC_2983 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2616733..2617608 Rhodopseudomonas palustris BisA53 4359231 YP_781297.1 CDS RPE_2377 NC_008435.1 2618645 2619406 D hypothetical protein 2618645..2619406 Rhodopseudomonas palustris BisA53 4359232 YP_781298.1 CDS RPE_2378 NC_008435.1 2619742 2619966 R PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: bja:bsl3938 putative biotinylated protein; biotin/lipoyl attachment domain-containing protein complement(2619742..2619966) Rhodopseudomonas palustris BisA53 4359233 YP_781299.1 CDS RPE_2380 NC_008435.1 2621114 2622670 D PFAM: carboxyl transferase; KEGG: rpc:RPC_3097 propionyl-CoA carboxylase; propionyl-CoA carboxylase 2621114..2622670 Rhodopseudomonas palustris BisA53 4359235 YP_781300.1 CDS RPE_2381 NC_008435.1 2622781 2623464 D PFAM: regulatory protein, TetR; KEGG: rpc:RPC_3096 transcriptional regulator, TetR family; TetR family transcriptional regulator 2622781..2623464 Rhodopseudomonas palustris BisA53 4359236 YP_781301.1 CDS RPE_2382 NC_008435.1 2623633 2625129 D TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: rpc:RPC_3095 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 2623633..2625129 Rhodopseudomonas palustris BisA53 4359237 YP_781302.1 CDS RPE_2383 NC_008435.1 2625164 2625391 D KEGG: rpb:RPB_2118 hypothetical protein; hypothetical protein 2625164..2625391 Rhodopseudomonas palustris BisA53 4359238 YP_781303.1 CDS RPE_2384 NC_008435.1 2625445 2625816 D KEGG: rpb:RPB_2119 PilT protein-like; PilT protein-like protein 2625445..2625816 Rhodopseudomonas palustris BisA53 4359239 YP_781304.1 CDS RPE_2385 NC_008435.1 2625813 2626961 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpb:RPB_2120 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 2625813..2626961 Rhodopseudomonas palustris BisA53 4359240 YP_781305.1 CDS RPE_2386 NC_008435.1 2626958 2628043 D catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA; 3-hydroxyisobutyryl-CoA hydrolase 2626958..2628043 Rhodopseudomonas palustris BisA53 4359241 YP_781306.1 CDS RPE_2387 NC_008435.1 2628077 2628964 D TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rpa:RPA3446 3-hydroxyisobutyrate dehydrogenase; 3-hydroxyisobutyrate dehydrogenase 2628077..2628964 Rhodopseudomonas palustris BisA53 4359242 YP_781307.1 CDS RPE_2388 NC_008435.1 2629140 2630864 D PFAM: AMP-dependent synthetase and ligase; KEGG: rpa:RPA3445 probable acetyl-CoA synthetase; AMP-dependent synthetase and ligase 2629140..2630864 Rhodopseudomonas palustris BisA53 4359645 YP_781308.1 CDS RPE_2389 NC_008435.1 2630944 2631438 D PFAM: MaoC domain protein dehydratase; KEGG: rpc:RPC_3089 MaoC-like dehydratase; dehydratase 2630944..2631438 Rhodopseudomonas palustris BisA53 4359646 YP_781309.1 CDS RPE_2390 NC_008435.1 2631457 2632374 D PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpc:RPC_3088 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2631457..2632374 Rhodopseudomonas palustris BisA53 4359647 YP_781310.1 CDS RPE_2391 NC_008435.1 2632625 2633857 D PFAM: HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpc:RPC_3087 HI0933-like protein; hypothetical protein 2632625..2633857 Rhodopseudomonas palustris BisA53 4359648 YP_781311.1 CDS RPE_2392 NC_008435.1 2634030 2635850 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_3086 ABC transporter related; ABC transporter-like protein complement(2634030..2635850) Rhodopseudomonas palustris BisA53 4359649 YP_781312.1 CDS RPE_2393 NC_008435.1 2635856 2636413 R PFAM: protein of unknown function DUF188; KEGG: rpd:RPD_2254 protein of unknown function DUF188; hypothetical protein complement(2635856..2636413) Rhodopseudomonas palustris BisA53 4359650 YP_781313.1 CDS RPE_2394 NC_008435.1 2636553 2639594 R TIGRFAM: outer membrane autotransporter barrel domain; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Autotransporter beta- domain protein; KEGG: rpb:RPB_3437 outer membrane autotransporter; outer membrane autotransporter complement(2636553..2639594) Rhodopseudomonas palustris BisA53 4359651 YP_781314.1 CDS RPE_2395 NC_008435.1 2639789 2640358 R KEGG: rpc:RPC_2342 hypothetical protein; hypothetical protein complement(2639789..2640358) Rhodopseudomonas palustris BisA53 4359652 YP_781315.1 CDS RPE_2396 NC_008435.1 2640392 2641396 R PFAM: polysaccharide deacetylase; KEGG: rpc:RPC_2343 polysaccharide deacetylase; polysaccharide deacetylase complement(2640392..2641396) Rhodopseudomonas palustris BisA53 4359653 YP_781316.1 CDS RPE_2397 NC_008435.1 2641549 2642124 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: glutathione peroxidase; KEGG: bja:bll4149 putative glutathione peroxidase; glutathione peroxidase complement(2641549..2642124) Rhodopseudomonas palustris BisA53 4359654 YP_781317.1 CDS RPE_2398 NC_008435.1 2642202 2643713 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpc:RPC_2344 ErfK/YbiS/YcfS/YnhG; hypothetical protein complement(2642202..2643713) Rhodopseudomonas palustris BisA53 4359655 YP_781318.1 CDS RPE_2399 NC_008435.1 2643931 2644476 D PFAM: CreA family protein; KEGG: rpc:RPC_2345 CreA; CreA family protein 2643931..2644476 Rhodopseudomonas palustris BisA53 4359656 YP_781319.1 CDS RPE_2400 NC_008435.1 2644839 2645384 D hypothetical protein 2644839..2645384 Rhodopseudomonas palustris BisA53 4359657 YP_781320.1 CDS RPE_2401 NC_008435.1 2645411 2645818 D KEGG: rpc:RPC_2347 hypothetical protein; hypothetical protein 2645411..2645818 Rhodopseudomonas palustris BisA53 4359658 YP_781321.1 CDS RPE_2402 NC_008435.1 2645865 2646509 R PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: rpc:RPC_2348 putative signal transduction histidine kinase; putative signal transduction histidine kinase complement(2645865..2646509) Rhodopseudomonas palustris BisA53 4359659 YP_781322.1 CDS RPE_2403 NC_008435.1 2646743 2647039 R KEGG: rpd:RPD_2939 hypothetical protein; hypothetical protein complement(2646743..2647039) Rhodopseudomonas palustris BisA53 4359660 YP_781323.1 CDS RPE_2404 NC_008435.1 2647391 2647789 D TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: rpa:RPA3032 phenylacetic acid degradation-related protein; hypothetical protein 2647391..2647789 Rhodopseudomonas palustris BisA53 4359661 YP_781324.1 CDS RPE_2405 NC_008435.1 2648113 2648727 D PFAM: GCN5-related N-acetyltransferase; KEGG: rpc:RPC_2354 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2648113..2648727 Rhodopseudomonas palustris BisA53 4359662 YP_781325.1 CDS RPE_2406 NC_008435.1 2648856 2649155 R KEGG: rpc:RPC_2355 hypothetical protein; hypothetical protein complement(2648856..2649155) Rhodopseudomonas palustris BisA53 4359663 YP_781326.1 CDS RPE_2407 NC_008435.1 2649563 2650087 D PFAM: MgtC/SapB transporter; KEGG: pcr:Pcryo_2508 MgtC/SapB transporter; MgtC/SapB transporter 2649563..2650087 Rhodopseudomonas palustris BisA53 4359664 YP_781327.1 CDS RPE_2408 NC_008435.1 2650090 2650560 R KEGG: rpc:RPC_2357 hypothetical protein; hypothetical protein complement(2650090..2650560) Rhodopseudomonas palustris BisA53 4359665 YP_781328.1 CDS RPE_2409 NC_008435.1 2650686 2651576 D PFAM: Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; KEGG: rpc:RPC_2358 Sel1; Sel1 domain-containing protein 2650686..2651576 Rhodopseudomonas palustris BisA53 4359666 YP_781329.1 CDS RPE_2410 NC_008435.1 2651598 2651876 R hypothetical protein complement(2651598..2651876) Rhodopseudomonas palustris BisA53 4359667 YP_781330.1 CDS RPE_2411 NC_008435.1 2651952 2652194 D KEGG: rpa:RPA2732 hypothetical protein; hypothetical protein 2651952..2652194 Rhodopseudomonas palustris BisA53 4359668 YP_781331.1 CDS RPE_2412 NC_008435.1 2652222 2652983 R KEGG: rpc:RPC_2360 protein tyrosine/serine phosphatase; protein tyrosine/serine phosphatase complement(2652222..2652983) Rhodopseudomonas palustris BisA53 4359669 YP_781332.1 CDS RPE_2413 NC_008435.1 2653032 2653637 R PFAM: Abortive infection protein; KEGG: rpc:RPC_2361 abortive infection protein; abortive infection protein complement(2653032..2653637) Rhodopseudomonas palustris BisA53 4359670 YP_781333.1 CDS RPE_2414 NC_008435.1 2653687 2653926 R KEGG: rpb:RPB_2514 hypothetical protein; hypothetical protein complement(2653687..2653926) Rhodopseudomonas palustris BisA53 4359671 YP_781334.1 CDS RPE_2415 NC_008435.1 2653994 2655433 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE3 domain protein; KEGG: rpa:RPA2292 sensor histidine kinase; multi-sensor signal transduction histidine kinase complement(2653994..2655433) Rhodopseudomonas palustris BisA53 4359672 YP_781335.1 CDS RPE_2416 NC_008435.1 2655629 2656219 D PFAM: NADPH-dependent FMN reductase; KEGG: rpb:RPB_2517 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 2655629..2656219 Rhodopseudomonas palustris BisA53 4359673 YP_781336.1 CDS RPE_2417 NC_008435.1 2656283 2657248 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sme:SMc04167 putative histidine-rich transporter transmembrane protein; cation diffusion facilitator family transporter complement(2656283..2657248) Rhodopseudomonas palustris BisA53 4359674 YP_781337.1 CDS RPE_2418 NC_008435.1 2657724 2658248 D KEGG: rpc:RPC_2366 hypothetical protein; hypothetical protein 2657724..2658248 Rhodopseudomonas palustris BisA53 4359675 YP_781338.1 CDS RPE_2419 NC_008435.1 2658412 2658675 D hypothetical protein 2658412..2658675 Rhodopseudomonas palustris BisA53 4359676 YP_781339.1 CDS RPE_2420 NC_008435.1 2658986 2659198 D PFAM: antenna complex, alpha/beta subunit; KEGG: rpa:RPA4292 light harvesting protein B-800-850, alpha chain B (antenna pigment protein, alpha chain B) (LH II-B alpha); antenna complex subunit alpha/beta 2658986..2659198 Rhodopseudomonas palustris BisA53 4359677 YP_781340.1 CDS RPE_2421 NC_008435.1 2660493 2660795 R hypothetical protein complement(2660493..2660795) Rhodopseudomonas palustris BisA53 4359678 YP_781341.1 CDS RPE_2422 NC_008435.1 2661064 2661750 R hypothetical protein complement(2661064..2661750) Rhodopseudomonas palustris BisA53 4359679 YP_781342.1 CDS RPE_2423 NC_008435.1 2661929 2662183 R KEGG: rpb:RPB_2524 hypothetical protein; hypothetical protein complement(2661929..2662183) Rhodopseudomonas palustris BisA53 4359680 YP_781343.1 CDS RPE_2424 NC_008435.1 2662180 2662380 R KEGG: rpb:RPB_2525 hypothetical protein; hypothetical protein complement(2662180..2662380) Rhodopseudomonas palustris BisA53 4359681 YP_781344.1 CDS RPE_2425 NC_008435.1 2662582 2662902 R KEGG: bja:bsr7707 hypothetical protein; hypothetical protein complement(2662582..2662902) Rhodopseudomonas palustris BisA53 4359682 YP_781345.1 CDS RPE_2426 NC_008435.1 2662985 2663230 R KEGG: rpc:RPC_4897 hypothetical protein; hypothetical protein complement(2662985..2663230) Rhodopseudomonas palustris BisA53 4359683 YP_781346.1 CDS RPE_2427 NC_008435.1 2663400 2664434 R KEGG: nha:Nham_1812 hypothetical protein; hypothetical protein complement(2663400..2664434) Rhodopseudomonas palustris BisA53 4359684 YP_781347.1 CDS RPE_2428 NC_008435.1 2664872 2666434 R KEGG: rpb:RPB_2536 hypothetical protein; hypothetical protein complement(2664872..2666434) Rhodopseudomonas palustris BisA53 4359685 YP_781348.1 CDS RPE_2429 NC_008435.1 2666741 2667856 R KEGG: rpb:RPB_2537 hypothetical protein; hypothetical protein complement(2666741..2667856) Rhodopseudomonas palustris BisA53 4359686 YP_781349.1 CDS RPE_2430 NC_008435.1 2667838 2670000 R PFAM: Integrase, catalytic region; KEGG: bmb:BruAb1_0746 transposase, hypothetical; integrase catalytic subunit complement(2667838..2670000) Rhodopseudomonas palustris BisA53 4359687 YP_781350.1 CDS RPE_2431 NC_008435.1 2670000 2670239 R hypothetical protein complement(2670000..2670239) Rhodopseudomonas palustris BisA53 4359688 YP_781351.1 CDS RPE_2432 NC_008435.1 2670318 2670605 D hypothetical protein 2670318..2670605 Rhodopseudomonas palustris BisA53 4359689 YP_781352.1 CDS RPE_2433 NC_008435.1 2672186 2672950 R KEGG: hypothetical protein; hypothetical protein complement(2672186..2672950) Rhodopseudomonas palustris BisA53 4359690 YP_781353.1 CDS RPE_2434 NC_008435.1 2673192 2673539 R hypothetical protein complement(2673192..2673539) Rhodopseudomonas palustris BisA53 4359691 YP_781354.1 CDS RPE_2435 NC_008435.1 2674165 2674563 D PFAM: transposase IS3/IS911 family protein; KEGG: bja:blr0034 putative transposase; transposase IS3/IS911 family protein 2674165..2674563 Rhodopseudomonas palustris BisA53 4359692 YP_781355.1 CDS RPE_2436 NC_008435.1 2674560 2674907 D PFAM: IS66 Orf2 family protein; KEGG: mag:amb0402 transposase and inactivated derivative; IS66 Orf2 family protein 2674560..2674907 Rhodopseudomonas palustris BisA53 4359693 YP_781356.1 CDS RPE_2437 NC_008435.1 2674981 2676567 D PFAM: transposase IS66; KEGG: mag:amb3325 transposase and inactivated derivative; transposase IS66 2674981..2676567 Rhodopseudomonas palustris BisA53 4359694 YP_781357.1 CDS RPE_2438 NC_008435.1 2676801 2678156 R hypothetical protein complement(2676801..2678156) Rhodopseudomonas palustris BisA53 4359695 YP_781358.1 CDS RPE_2439 NC_008435.1 2678844 2680826 R PFAM: peptidase M41; AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: mag:amb1687 ATP-dependent Zn protease; ATPase central domain-containing protein complement(2678844..2680826) Rhodopseudomonas palustris BisA53 4359696 YP_781359.1 CDS RPE_2440 NC_008435.1 2680848 2681186 R hypothetical protein complement(2680848..2681186) Rhodopseudomonas palustris BisA53 4359697 YP_781360.1 CDS RPE_2441 NC_008435.1 2681363 2681815 R hypothetical protein complement(2681363..2681815) Rhodopseudomonas palustris BisA53 4358138 YP_781361.1 CDS RPE_2442 NC_008435.1 2682076 2682321 D PFAM: helix-turn-helix domain protein; KEGG: ret:RHE_CH00634 hypothetical protein; XRE family transcriptional regulator 2682076..2682321 Rhodopseudomonas palustris BisA53 4358139 YP_781362.1 CDS RPE_2443 NC_008435.1 2682568 2683581 D KEGG: nha:Nham_4457 hypothetical protein; hypothetical protein 2682568..2683581 Rhodopseudomonas palustris BisA53 4358140 YP_781363.1 CDS RPE_2444 NC_008435.1 2683578 2684066 D KEGG: nha:Nham_4458 putative threonine efflux protein; putative threonine efflux protein 2683578..2684066 Rhodopseudomonas palustris BisA53 4358141 YP_781364.1 CDS RPE_2445 NC_008435.1 2684063 2685949 D KEGG: nha:Nham_4459 hypothetical protein; hypothetical protein 2684063..2685949 Rhodopseudomonas palustris BisA53 4358142 YP_781365.1 CDS RPE_2446 NC_008435.1 2686492 2688891 D KEGG: rpb:RPB_2541 hypothetical protein; hypothetical protein 2686492..2688891 Rhodopseudomonas palustris BisA53 4358143 YP_781366.1 CDS RPE_2447 NC_008435.1 2688888 2690201 D KEGG: rpb:RPB_2542 hypothetical protein; hypothetical protein 2688888..2690201 Rhodopseudomonas palustris BisA53 4358144 YP_781367.1 CDS RPE_2448 NC_008435.1 2690170 2692422 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: rpb:RPB_2543 DEAD/DEAH box helicase; DEAD/DEAH box helicase 2690170..2692422 Rhodopseudomonas palustris BisA53 4358145 YP_781368.1 CDS RPE_2449 NC_008435.1 2692803 2693693 R KEGG: rme:Rmet_6083 hypothetical protein; hypothetical protein complement(2692803..2693693) Rhodopseudomonas palustris BisA53 4358146 YP_781369.1 CDS RPE_2450 NC_008435.1 2693857 2694138 R KEGG: mlo:msr6604 hypothetical protein; hypothetical protein complement(2693857..2694138) Rhodopseudomonas palustris BisA53 4358147 YP_781370.1 CDS RPE_2451 NC_008435.1 2695327 2696184 D KEGG: rpc:RPC_1735 ABC-type phosphate transport system periplasmic component-like; ABC-type phosphate transport system periplasmic component-like protein 2695327..2696184 Rhodopseudomonas palustris BisA53 4358148 YP_781371.1 CDS RPE_2452 NC_008435.1 2696181 2698520 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; KEGG: rpc:RPC_1734 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); diguanylate cyclase/phosphodiesterase 2696181..2698520 Rhodopseudomonas palustris BisA53 4358149 YP_781372.1 CDS RPE_2453 NC_008435.1 2698603 2698800 R KEGG: rpc:RPC_1545 hypothetical protein; hypothetical protein complement(2698603..2698800) Rhodopseudomonas palustris BisA53 4358150 YP_781373.1 CDS RPE_2454 NC_008435.1 2698904 2699422 R PFAM: BLUF domain protein; KEGG: rpa:RPA3367 possible activator of photopigment and puc with BLUF domain; BLUF domain-containing protein complement(2698904..2699422) Rhodopseudomonas palustris BisA53 4358151 YP_781374.1 CDS RPE_2455 NC_008435.1 2699636 2699923 R hypothetical protein complement(2699636..2699923) Rhodopseudomonas palustris BisA53 4358152 YP_781375.1 CDS RPE_2456 NC_008435.1 2699939 2701672 R KEGG: pol:Bpro_5346 hypothetical protein; hypothetical protein complement(2699939..2701672) Rhodopseudomonas palustris BisA53 4358153 YP_781376.1 CDS RPE_2457 NC_008435.1 2701724 2701987 R hypothetical protein complement(2701724..2701987) Rhodopseudomonas palustris BisA53 4358154 YP_781377.1 CDS RPE_2458 NC_008435.1 2702039 2703739 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: rpc:RPC_1253 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2702039..2703739) Rhodopseudomonas palustris BisA53 4358155 YP_781378.1 CDS RPE_2459 NC_008435.1 2704426 2706126 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_4407 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2704426..2706126 Rhodopseudomonas palustris BisA53 4358156 YP_781379.1 CDS RPE_2460 NC_008435.1 2706620 2708620 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rpa:RPA3219 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL); diguanylate cyclase/phosphodiesterase 2706620..2708620 Rhodopseudomonas palustris BisA53 4358157 YP_781380.1 CDS RPE_2461 NC_008435.1 2708643 2708795 D KEGG: rpa:RPA4449 pmethyl-accepting chemotaxis receptor/sensory transducer; pmethyl-accepting chemotaxis receptor/sensory transducer 2708643..2708795 Rhodopseudomonas palustris BisA53 4358158 YP_781381.1 CDS RPE_2462 NC_008435.1 2709333 2709692 R hypothetical protein complement(2709333..2709692) Rhodopseudomonas palustris BisA53 4358159 YP_781382.1 CDS RPE_2463 NC_008435.1 2709956 2710858 R PFAM: metallophosphoesterase; KEGG: sat:SYN_00526 calcineurin-like phosphoesterase; metallophosphoesterase complement(2709956..2710858) Rhodopseudomonas palustris BisA53 4358160 YP_781383.1 CDS RPE_2464 NC_008435.1 2711290 2713314 D KEGG: gvi:gll4095 hypothetical protein; hypothetical protein 2711290..2713314 Rhodopseudomonas palustris BisA53 4358161 YP_781384.1 CDS RPE_2465 NC_008435.1 2713562 2714287 R KEGG: rme:Rmet_2339 hypothetical protein; hypothetical protein complement(2713562..2714287) Rhodopseudomonas palustris BisA53 4358162 YP_781385.1 CDS RPE_2466 NC_008435.1 2714318 2715214 R KEGG: rme:Rmet_2340 hypothetical protein; hypothetical protein complement(2714318..2715214) Rhodopseudomonas palustris BisA53 4358163 YP_781386.1 CDS RPE_2467 NC_008435.1 2715214 2715714 R KEGG: rme:Rmet_2341 hypothetical protein; hypothetical protein complement(2715214..2715714) Rhodopseudomonas palustris BisA53 4358164 YP_781387.1 CDS RPE_2468 NC_008435.1 2715711 2716187 R KEGG: pol:Bpro_5159 hypothetical protein; hypothetical protein complement(2715711..2716187) Rhodopseudomonas palustris BisA53 4358165 YP_781388.1 CDS RPE_2469 NC_008435.1 2716184 2717107 R PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rme:Rmet_2342 AAA ATPase, central region; ATPase central domain-containing protein complement(2716184..2717107) Rhodopseudomonas palustris BisA53 4358166 YP_781389.1 CDS RPE_2470 NC_008435.1 2717190 2717411 R KEGG: bja:bsr0071 hypothetical protein; hypothetical protein complement(2717190..2717411) Rhodopseudomonas palustris BisA53 4358167 YP_781390.1 CDS RPE_2471 NC_008435.1 2717569 2717928 D PFAM: helix-turn-helix domain protein; KEGG: bja:bll0070 hypothetical protein; XRE family transcriptional regulator 2717569..2717928 Rhodopseudomonas palustris BisA53 4358168 YP_781391.1 CDS RPE_2472 NC_008435.1 2717925 2718446 D PFAM: protein of unknown function DUF955; KEGG: bja:bll0069 hypothetical protein; hypothetical protein 2717925..2718446 Rhodopseudomonas palustris BisA53 4358169 YP_781392.1 CDS RPE_2473 NC_008435.1 2718462 2719934 D KEGG: bja:bll0068 exonuclease I; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; exodeoxyribonuclease I 2718462..2719934 Rhodopseudomonas palustris BisA53 4358170 YP_781393.1 CDS RPE_2474 NC_008435.1 2720810 2721418 R KEGG: bja:bll4265 hypothetical protein; hypothetical protein complement(2720810..2721418) Rhodopseudomonas palustris BisA53 4358171 YP_781394.1 CDS RPE_2475 NC_008435.1 2722151 2724310 R KEGG: bja:bll4266 hypothetical protein; hypothetical protein complement(2722151..2724310) Rhodopseudomonas palustris BisA53 4358172 YP_781395.1 CDS RPE_2476 NC_008435.1 2724307 2724774 R KEGG: bja:bll4267 hypothetical protein; hypothetical protein complement(2724307..2724774) Rhodopseudomonas palustris BisA53 4358173 YP_781396.1 CDS RPE_2477 NC_008435.1 2724777 2725301 R KEGG: bja:bll4268 hypothetical protein; hypothetical protein complement(2724777..2725301) Rhodopseudomonas palustris BisA53 4358174 YP_781397.1 CDS RPE_2478 NC_008435.1 2725319 2727337 R PFAM: phage integrase family protein; KEGG: bja:bll4269 hypothetical protein; phage integrase family protein complement(2725319..2727337) Rhodopseudomonas palustris BisA53 4358175 YP_781398.1 CDS RPE_2479 NC_008435.1 2727315 2729204 R KEGG: bja:bll4270 hypothetical protein; hypothetical protein complement(2727315..2729204) Rhodopseudomonas palustris BisA53 4358176 YP_781399.1 CDS RPE_2480 NC_008435.1 2729242 2730492 R PFAM: phage integrase family protein; KEGG: bja:bll4271 hypothetical protein; phage integrase family protein complement(2729242..2730492) Rhodopseudomonas palustris BisA53 4358177 YP_781400.1 CDS RPE_2482 NC_008435.1 2732172 2732492 R hypothetical protein complement(2732172..2732492) Rhodopseudomonas palustris BisA53 4358179 YP_781401.1 CDS RPE_2483 NC_008435.1 2732527 2735010 D PFAM: SMC domain protein; KEGG: bja:bll1930 hypothetical protein; SMC domain-containing protein 2732527..2735010 Rhodopseudomonas palustris BisA53 4358180 YP_781402.1 CDS RPE_2484 NC_008435.1 2735034 2737646 D PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: rpd:RPD_3368 ATP-binding region, ATPase-like; ATPase domain-containing protein 2735034..2737646 Rhodopseudomonas palustris BisA53 4358181 YP_781403.1 CDS RPE_2485 NC_008435.1 2737735 2739645 R PFAM: peptidase M41; AAA ATPase, central domain protein; KEGG: mag:amb1687 ATP-dependent Zn protease; ATPase central domain-containing protein complement(2737735..2739645) Rhodopseudomonas palustris BisA53 4358182 YP_781404.1 CDS RPE_2486 NC_008435.1 2739975 2740556 D hypothetical protein 2739975..2740556 Rhodopseudomonas palustris BisA53 4358183 YP_781405.1 CDS RPE_2487 NC_008435.1 2740996 2741259 D PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 2740996..2741259 Rhodopseudomonas palustris BisA53 4358184 YP_781406.1 CDS RPE_2488 NC_008435.1 2742272 2743339 R KEGG: bja:bll2295 hypothetical protein; hypothetical protein complement(2742272..2743339) Rhodopseudomonas palustris BisA53 4358185 YP_781407.1 CDS RPE_2489 NC_008435.1 2743946 2744797 D KEGG: rsp:RSP_3808 hypothetical protein; hypothetical protein 2743946..2744797 Rhodopseudomonas palustris BisA53 4358186 YP_781408.1 CDS RPE_2490 NC_008435.1 2745050 2745556 D hypothetical protein 2745050..2745556 Rhodopseudomonas palustris BisA53 4358187 YP_781409.1 CDS RPE_2491 NC_008435.1 2745658 2746320 D hypothetical protein 2745658..2746320 Rhodopseudomonas palustris BisA53 4358188 YP_781410.1 CDS RPE_2492 NC_008435.1 2746839 2747885 R PFAM: Patatin; KEGG: rpd:RPD_2292 patatin; patatin complement(2746839..2747885) Rhodopseudomonas palustris BisA53 4358189 YP_781411.1 CDS RPE_2493 NC_008435.1 2747882 2748358 R KEGG: pol:Bpro_1540 hypothetical protein; hypothetical protein complement(2747882..2748358) Rhodopseudomonas palustris BisA53 4360099 YP_781412.1 CDS RPE_2494 NC_008435.1 2748363 2749547 R KEGG: vvu:VV12027 hypothetical protein; hypothetical protein complement(2748363..2749547) Rhodopseudomonas palustris BisA53 4360100 YP_781413.1 CDS RPE_2495 NC_008435.1 2749741 2750310 D KEGG: gka:GK2254 DNA-directed RNA polymerase ECF-type sigma factor (sigma-X); ECF subfamily RNA polymerase sigma-24 factor 2749741..2750310 Rhodopseudomonas palustris BisA53 4360101 YP_781414.1 CDS RPE_2496 NC_008435.1 2750307 2750744 D hypothetical protein 2750307..2750744 Rhodopseudomonas palustris BisA53 4360102 YP_781415.1 CDS RPE_2497 NC_008435.1 2750746 2751513 D PFAM: protein of unknown function DUF955; KEGG: rsp:RSP_4244 hypothetical protein; hypothetical protein 2750746..2751513 Rhodopseudomonas palustris BisA53 4360103 YP_781416.1 CDS RPE_2498 NC_008435.1 2751599 2753935 R KEGG: nha:Nham_0079 hypothetical protein; hypothetical protein complement(2751599..2753935) Rhodopseudomonas palustris BisA53 4360104 YP_781417.1 CDS RPE_2499 NC_008435.1 2754170 2754733 R KEGG: rpd:RPD_0028 hypothetical protein; hypothetical protein complement(2754170..2754733) Rhodopseudomonas palustris BisA53 4360105 YP_781418.1 CDS RPE_2500 NC_008435.1 2755266 2758286 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; peptidase C14, caspase catalytic subunit p20; KEGG: sat:SYN_01854 helicase; DEAD/DEAH box helicase complement(2755266..2758286) Rhodopseudomonas palustris BisA53 4360106 YP_781419.1 CDS RPE_2501 NC_008435.1 2758726 2762493 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(2758726..2762493) Rhodopseudomonas palustris BisA53 4360107 YP_781420.1 CDS RPE_2502 NC_008435.1 2763164 2764063 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: rpc:RPC_2383 protein of unknown function DUF6, transmembrane; hypothetical protein 2763164..2764063 Rhodopseudomonas palustris BisA53 4360108 YP_781421.1 CDS RPE_2503 NC_008435.1 2764325 2764849 D KEGG: rpc:RPC_2385 hypothetical protein; hypothetical protein 2764325..2764849 Rhodopseudomonas palustris BisA53 4360109 YP_781422.1 CDS RPE_2504 NC_008435.1 2764907 2765518 R KEGG: rpd:RPD_2903 hypothetical protein; hypothetical protein complement(2764907..2765518) Rhodopseudomonas palustris BisA53 4360110 YP_781423.1 CDS RPE_2505 NC_008435.1 2765885 2767294 R KEGG: rpc:RPC_2386 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; glutamine synthetase, type I complement(2765885..2767294) Rhodopseudomonas palustris BisA53 4360111 YP_781424.1 CDS RPE_2506 NC_008435.1 2767377 2767715 R PFAM: nitrogen regulatory protein P-II; KEGG: rpc:RPC_2387 nitrogen regulatory protein P-II (GlnB, GlnK); nitrogen regulatory protein P-II complement(2767377..2767715) Rhodopseudomonas palustris BisA53 4360112 YP_781425.1 CDS RPE_2507 NC_008435.1 2768133 2769632 D TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: rpc:RPC_2388 protein of unknown function UPF0031; carbohydrate kinase, YjeF-like protein 2768133..2769632 Rhodopseudomonas palustris BisA53 4360113 YP_781426.1 CDS RPE_2508 NC_008435.1 2769640 2770950 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; KEGG: rpc:RPC_2390 twin-arginine translocation pathway signal; multicopper oxidase complement(2769640..2770950) Rhodopseudomonas palustris BisA53 4360114 YP_781427.1 CDS tig NC_008435.1 2771340 2772701 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 2771340..2772701 Rhodopseudomonas palustris BisA53 4360116 YP_781428.1 CDS RPE_2510 NC_008435.1 2773059 2773694 D PFAM: peptidase S14, ClpP; KEGG: rpb:RPB_2563 endopeptidase Clp; endopeptidase Clp 2773059..2773694 Rhodopseudomonas palustris BisA53 4360117 YP_781429.1 CDS clpX NC_008435.1 2774082 2775356 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 2774082..2775356 Rhodopseudomonas palustris BisA53 4360118 YP_781430.1 CDS RPE_2512 NC_008435.1 2775820 2778243 D KEGG: rpc:RPC_2394 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La 2775820..2778243 Rhodopseudomonas palustris BisA53 4360119 YP_781431.1 CDS RPE_2513 NC_008435.1 2778470 2779234 D hypothetical protein 2778470..2779234 Rhodopseudomonas palustris BisA53 4360120 YP_781432.1 CDS RPE_2514 NC_008435.1 2779477 2782620 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rpb:RPB_2567 hydrophobe/amphiphile efflux-1 HAE1; hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(2779477..2782620) Rhodopseudomonas palustris BisA53 4360122 YP_781433.1 CDS RPE_2515 NC_008435.1 2782664 2783905 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rpb:RPB_2568 secretion protein HlyD; RND family efflux transporter MFP subunit complement(2782664..2783905) Rhodopseudomonas palustris BisA53 4360123 YP_781434.1 CDS RPE_2516 NC_008435.1 2784114 2785385 R catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T complement(2784114..2785385) Rhodopseudomonas palustris BisA53 4360124 YP_781435.1 CDS RPE_2517 NC_008435.1 2785475 2785786 R PFAM: histone family protein DNA-binding protein; KEGG: rpb:RPB_2570 histone-like DNA-binding protein; histone family protein DNA-binding protein complement(2785475..2785786) Rhodopseudomonas palustris BisA53 4360125 YP_781436.1 CDS RPE_2518 NC_008435.1 2786374 2788404 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:blr5623 TPR domain protein; hypothetical protein 2786374..2788404 Rhodopseudomonas palustris BisA53 4360127 YP_781437.1 CDS RPE_2519 NC_008435.1 2788719 2789084 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 2788719..2789084 Rhodopseudomonas palustris BisA53 4360128 YP_781438.1 CDS RPE_2520 NC_008435.1 2789075 2789677 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 2789075..2789677 Rhodopseudomonas palustris BisA53 4360129 YP_781439.1 CDS RPE_2521 NC_008435.1 2789688 2790293 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C 2789688..2790293 Rhodopseudomonas palustris BisA53 4360130 YP_781440.1 CDS RPE_2522 NC_008435.1 2790395 2790730 D crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown; hypothetical protein 2790395..2790730 Rhodopseudomonas palustris BisA53 4360131 YP_781441.1 CDS RPE_2523 NC_008435.1 2790780 2791970 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 2790780..2791970 Rhodopseudomonas palustris BisA53 4360132 YP_781442.1 CDS RPE_2524 NC_008435.1 2791967 2792932 D TIGRFAM: methyltransferase FkbM family; KEGG: rpc:RPC_2405 methyltransferase FkbM; FkbM family methyltransferase 2791967..2792932 Rhodopseudomonas palustris BisA53 4360133 YP_781443.1 CDS RPE_2525 NC_008435.1 2792947 2793696 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 2792947..2793696 Rhodopseudomonas palustris BisA53 4360134 YP_781444.1 CDS RPE_2526 NC_008435.1 2793693 2793911 D KEGG: rpc:RPC_2407 hypothetical protein; hypothetical protein 2793693..2793911 Rhodopseudomonas palustris BisA53 4360135 YP_781445.1 CDS RPE_2527 NC_008435.1 2793930 2795255 D part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 2793930..2795255 Rhodopseudomonas palustris BisA53 4360136 YP_781446.1 CDS RPE_2528 NC_008435.1 2795260 2795469 D KEGG: rpc:RPC_2409 hypothetical protein; hypothetical protein 2795260..2795469 Rhodopseudomonas palustris BisA53 4360137 YP_781447.1 CDS RPE_2529 NC_008435.1 2795506 2797581 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 2795506..2797581 Rhodopseudomonas palustris BisA53 4360138 YP_781448.1 CDS RPE_2530 NC_008435.1 2797592 2798617 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 2797592..2798617 Rhodopseudomonas palustris BisA53 4360139 YP_781449.1 CDS RPE_2531 NC_008435.1 2798625 2799113 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 2798625..2799113 Rhodopseudomonas palustris BisA53 4360140 YP_781450.1 CDS RPE_2532 NC_008435.1 2799123 2799761 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 2799123..2799761 Rhodopseudomonas palustris BisA53 4360141 YP_781451.1 CDS RPE_2533 NC_008435.1 2799758 2800066 D PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: rpc:RPC_2414 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase subunit 4L 2799758..2800066 Rhodopseudomonas palustris BisA53 4360142 YP_781452.1 CDS RPE_2534 NC_008435.1 2800074 2802176 D Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 2800074..2802176 Rhodopseudomonas palustris BisA53 4360143 YP_781453.1 CDS RPE_2535 NC_008435.1 2802176 2803693 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 2802176..2803693 Rhodopseudomonas palustris BisA53 4360144 YP_781454.1 CDS RPE_2536 NC_008435.1 2803719 2805155 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 2803719..2805155 Rhodopseudomonas palustris BisA53 4360145 YP_781455.1 CDS RPE_2537 NC_008435.1 2805157 2805969 D TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: rpc:RPC_2418 biotin--acetyl-CoA-carboxylase ligase; biotin--acetyl-CoA-carboxylase ligase 2805157..2805969 Rhodopseudomonas palustris BisA53 4360146 YP_781456.1 CDS RPE_2538 NC_008435.1 2805969 2807639 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: rpc:RPC_2419 beta-lactamase-like; beta-lactamase domain-containing protein 2805969..2807639 Rhodopseudomonas palustris BisA53 4360147 YP_781457.1 CDS RPE_2539 NC_008435.1 2807663 2808067 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rpa:RPA2934 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 2807663..2808067 Rhodopseudomonas palustris BisA53 4360148 YP_781458.1 CDS RPE_2540 NC_008435.1 2808071 2808361 D PFAM: protein of unknown function DUF1467; KEGG: rpc:RPC_2421 protein of unknown function DUF1467; hypothetical protein 2808071..2808361 Rhodopseudomonas palustris BisA53 4357998 YP_781459.1 CDS RPE_2541 NC_008435.1 2808313 2808654 R hypothetical protein complement(2808313..2808654) Rhodopseudomonas palustris BisA53 4357999 YP_781460.1 CDS RPE_2542 NC_008435.1 2808777 2809148 D KEGG: rpc:RPC_2422 hypothetical protein; hypothetical protein 2808777..2809148 Rhodopseudomonas palustris BisA53 4358000 YP_781461.1 CDS RPE_2543 NC_008435.1 2809319 2809846 D PFAM: protein of unknown function DUF461; KEGG: rpb:RPB_2594 protein of unknown function DUF461; hypothetical protein 2809319..2809846 Rhodopseudomonas palustris BisA53 4358001 YP_781462.1 CDS RPE_2544 NC_008435.1 2810007 2811326 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 2810007..2811326 Rhodopseudomonas palustris BisA53 4358002 YP_781463.1 CDS RPE_2545 NC_008435.1 2811403 2812683 D TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: rpc:RPC_2428 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein 2811403..2812683 Rhodopseudomonas palustris BisA53 4358003 YP_781464.1 CDS RPE_2546 NC_008435.1 2812680 2813390 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_2429 ABC transporter related; ABC transporter-like protein 2812680..2813390 Rhodopseudomonas palustris BisA53 4358004 YP_781465.1 CDS RPE_2547 NC_008435.1 2813395 2813646 R KEGG: rpd:RPD_2862 hypothetical protein; hypothetical protein complement(2813395..2813646) Rhodopseudomonas palustris BisA53 4358005 YP_781466.1 CDS RPE_2548 NC_008435.1 2813676 2813915 R KEGG: rpd:RPD_2861 hypothetical protein; hypothetical protein complement(2813676..2813915) Rhodopseudomonas palustris BisA53 4358006 YP_781467.1 CDS RPE_2549 NC_008435.1 2814005 2814274 R KEGG: rpc:RPC_2431 hypothetical protein; hypothetical protein complement(2814005..2814274) Rhodopseudomonas palustris BisA53 4358007 YP_781468.1 CDS dnaE NC_008435.1 2814806 2818303 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 2814806..2818303 Rhodopseudomonas palustris BisA53 4358008 YP_781469.1 CDS RPE_2551 NC_008435.1 2818368 2818571 D KEGG: rpc:RPC_2434 hypothetical protein; hypothetical protein 2818368..2818571 Rhodopseudomonas palustris BisA53 4358009 YP_781470.1 CDS RPE_2552 NC_008435.1 2818571 2818969 D PFAM: PilT protein domain protein; KEGG: rpc:RPC_2435 PilT protein-like; PilT domain-containing protein 2818571..2818969 Rhodopseudomonas palustris BisA53 4358010 YP_781471.1 CDS rpsB NC_008435.1 2819332 2820324 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 2819332..2820324 Rhodopseudomonas palustris BisA53 4358011 YP_781472.1 CDS tsf NC_008435.1 2820457 2821380 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 2820457..2821380 Rhodopseudomonas palustris BisA53 4358012 YP_781473.1 CDS pyrH NC_008435.1 2821447 2822163 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 2821447..2822163 Rhodopseudomonas palustris BisA53 4358013 YP_781474.1 CDS frr NC_008435.1 2822231 2822794 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 2822231..2822794 Rhodopseudomonas palustris BisA53 4358014 YP_781475.1 CDS RPE_2557 NC_008435.1 2822930 2823688 D catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 2822930..2823688 Rhodopseudomonas palustris BisA53 4358015 YP_781476.1 CDS RPE_2558 NC_008435.1 2823694 2824536 D PFAM: phosphatidate cytidylyltransferase; KEGG: rpc:RPC_2441 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 2823694..2824536 Rhodopseudomonas palustris BisA53 4358016 YP_781477.1 CDS RPE_2559 NC_008435.1 2824541 2825764 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2824541..2825764 Rhodopseudomonas palustris BisA53 4358017 YP_781478.1 CDS RPE_2560 NC_008435.1 2825806 2826957 D TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: rpc:RPC_2443 peptidase M50, putative membrane-associated zinc metallopeptidase; peptidase M50 membrane-associated zinc metallopeptidase 2825806..2826957 Rhodopseudomonas palustris BisA53 4358018 YP_781479.1 CDS RPE_2561 NC_008435.1 2827131 2829674 D PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: rpc:RPC_2444 surface antigen (D15); surface antigen (D15) 2827131..2829674 Rhodopseudomonas palustris BisA53 4358019 YP_781480.1 CDS lpxD NC_008435.1 2829707 2830789 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 2829707..2830789 Rhodopseudomonas palustris BisA53 4358020 YP_781481.1 CDS fabZ NC_008435.1 2830789 2831244 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 2830789..2831244 Rhodopseudomonas palustris BisA53 4358021 YP_781482.1 CDS RPE_2564 NC_008435.1 2831255 2832088 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 2831255..2832088 Rhodopseudomonas palustris BisA53 4358022 YP_781483.1 CDS RPE_2565 NC_008435.1 2832111 2832965 D PFAM: protein of unknown function DUF1009; KEGG: rpa:RPA2910 hypothetical protein; hypothetical protein 2832111..2832965 Rhodopseudomonas palustris BisA53 4358023 YP_781484.1 CDS lpxB NC_008435.1 2832962 2834137 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 2832962..2834137 Rhodopseudomonas palustris BisA53 4358024 YP_781485.1 CDS gltA NC_008435.1 2834190 2835494 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(2834190..2835494) Rhodopseudomonas palustris BisA53 4358025 YP_781486.1 CDS gltX NC_008435.1 2835652 2837076 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(2835652..2837076) Rhodopseudomonas palustris BisA53 4358026 YP_781487.1 CDS RPE_2569 NC_008435.1 2837229 2838911 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 2837229..2838911 Rhodopseudomonas palustris BisA53 4358027 YP_781488.1 CDS RPE_2570 NC_008435.1 2838987 2841284 D PFAM: ComEC/Rec2-related protein; KEGG: rpc:RPC_2453 ComEC/Rec2-related protein; ComEC/Rec2-like protein 2838987..2841284 Rhodopseudomonas palustris BisA53 4358028 YP_781489.1 CDS RPE_2571 NC_008435.1 2841342 2842055 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(2841342..2842055) Rhodopseudomonas palustris BisA53 4358029 YP_781490.1 CDS RPE_2572 NC_008435.1 2842236 2843447 R TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: rpc:RPC_2455 MoeA-like, domain I and II; molybdenum cofactor synthesis domain-containing protein complement(2842236..2843447) Rhodopseudomonas palustris BisA53 4358030 YP_781491.1 CDS RPE_2573 NC_008435.1 2843669 2843929 D KEGG: rpa:RPA2901 hypothetical protein; hypothetical protein 2843669..2843929 Rhodopseudomonas palustris BisA53 4358031 YP_781492.1 CDS RPE_2574 NC_008435.1 2844042 2844347 D KEGG: rpc:RPC_1306 hypothetical protein; hypothetical protein 2844042..2844347 Rhodopseudomonas palustris BisA53 4358032 YP_781493.1 CDS RPE_2575 NC_008435.1 2844510 2845436 D PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: bja:blr1253 dehydrogenase; short-chain dehydrogenase/reductase SDR 2844510..2845436 Rhodopseudomonas palustris BisA53 4358033 YP_781494.1 CDS RPE_2576 NC_008435.1 2845936 2847210 D hypothetical protein 2845936..2847210 Rhodopseudomonas palustris BisA53 4358034 YP_781495.1 CDS RPE_2577 NC_008435.1 2847808 2848188 D KEGG: rpa:RPA1717 hypothetical protein; hypothetical protein 2847808..2848188 Rhodopseudomonas palustris BisA53 4358035 YP_781496.1 CDS RPE_2578 NC_008435.1 2848483 2848764 R hypothetical protein complement(2848483..2848764) Rhodopseudomonas palustris BisA53 4358036 YP_781497.1 CDS RPE_2579 NC_008435.1 2849360 2849686 R hypothetical protein complement(2849360..2849686) Rhodopseudomonas palustris BisA53 4358037 YP_781498.1 CDS RPE_2580 NC_008435.1 2850074 2850592 D TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpb:RPB_1951 hypothetical protein; hypothetical protein 2850074..2850592 Rhodopseudomonas palustris BisA53 4358038 YP_781499.1 CDS RPE_2581 NC_008435.1 2850817 2851224 D KEGG: rpb:RPB_3014 hypothetical protein; hypothetical protein 2850817..2851224 Rhodopseudomonas palustris BisA53 4358039 YP_781500.1 CDS RPE_2582 NC_008435.1 2851247 2852014 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpc:RPC_2458 HAD-superfamily hydrolase subfamily IA, variant 3; HAD family hydrolase complement(2851247..2852014) Rhodopseudomonas palustris BisA53 4358040 YP_781501.1 CDS RPE_2583 NC_008435.1 2852214 2853056 D KEGG: rpc:RPC_2459 OmpA/MotB; OmpA/MotB protein 2852214..2853056 Rhodopseudomonas palustris BisA53 4358041 YP_781502.1 CDS RPE_2584 NC_008435.1 2853240 2853518 D PFAM: type IV pilus assembly PilZ; KEGG: rpa:RPA4296 hypothetical protein; type IV pilus assembly PilZ 2853240..2853518 Rhodopseudomonas palustris BisA53 4358042 YP_781503.1 CDS RPE_2585 NC_008435.1 2853543 2856194 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: rpc:RPC_2461 ATPase, E1-E2 type; P-type HAD superfamily ATPase complement(2853543..2856194) Rhodopseudomonas palustris BisA53 4358043 YP_781504.1 CDS RPE_2586 NC_008435.1 2857356 2857859 R PFAM: heat shock protein Hsp20; KEGG: rpc:RPC_2462 heat shock protein HSP20; heat shock protein Hsp20 complement(2857356..2857859) Rhodopseudomonas palustris BisA53 4358044 YP_781505.1 CDS RPE_2587 NC_008435.1 2858082 2858486 D KEGG: rpc:RPC_2463 hypothetical protein; hypothetical protein 2858082..2858486 Rhodopseudomonas palustris BisA53 4358045 YP_781506.1 CDS lpxD NC_008435.1 2858686 2859756 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(2858686..2859756) Rhodopseudomonas palustris BisA53 4358046 YP_781507.1 CDS moaC NC_008435.1 2859798 2860355 R MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC complement(2859798..2860355) Rhodopseudomonas palustris BisA53 4358047 YP_781508.1 CDS trpC NC_008435.1 2860358 2861179 R involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase complement(2860358..2861179) Rhodopseudomonas palustris BisA53 4358048 YP_781509.1 CDS trpD NC_008435.1 2861187 2862206 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(2861187..2862206) Rhodopseudomonas palustris BisA53 4358049 YP_781510.1 CDS RPE_2592 NC_008435.1 2862247 2864148 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rpc:RPC_2468 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(2862247..2864148) Rhodopseudomonas palustris BisA53 4360269 YP_781511.1 CDS RPE_2593 NC_008435.1 2864436 2865197 D PFAM: triosephosphate isomerase; KEGG: rpc:RPC_2471 triosephosphate isomerase; Triose-phosphate isomerase 2864436..2865197 Rhodopseudomonas palustris BisA53 4360270 YP_781512.1 CDS secG NC_008435.1 2865354 2865746 D TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: rpc:RPC_2472 preprotein translocase, SecG subunit; preprotein translocase subunit SecG 2865354..2865746 Rhodopseudomonas palustris BisA53 4360271 YP_781513.1 CDS pyrG NC_008435.1 2865913 2867544 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 2865913..2867544 Rhodopseudomonas palustris BisA53 4360272 YP_781514.1 CDS RPE_2596 NC_008435.1 2867697 2870096 D PFAM: protein of unknown function DUF1217; KEGG: rpc:RPC_2474 protein of unknown function DUF1217; hypothetical protein 2867697..2870096 Rhodopseudomonas palustris BisA53 4360273 YP_781515.1 CDS RPE_2597 NC_008435.1 2870144 2870461 R PFAM: PAAR repeat-containing protein; KEGG: rpb:RPB_2789 PaaR; PAAR repeat-containing protein complement(2870144..2870461) Rhodopseudomonas palustris BisA53 4360274 YP_781516.1 CDS RPE_2598 NC_008435.1 2870491 2870766 R KEGG: rpa:RPA2882 hypothetical protein; hypothetical protein complement(2870491..2870766) Rhodopseudomonas palustris BisA53 4360275 YP_781517.1 CDS RPE_2599 NC_008435.1 2870756 2870929 R KEGG: bbr:BB1689 hypothetical protein; hypothetical protein complement(2870756..2870929) Rhodopseudomonas palustris BisA53 4360276 YP_781518.1 CDS RPE_2600 NC_008435.1 2871181 2872056 D KEGG: rpc:RPC_2476 hypothetical protein; hypothetical protein 2871181..2872056 Rhodopseudomonas palustris BisA53 4360277 YP_781519.1 CDS RPE_2601 NC_008435.1 2872057 2872974 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 2872057..2872974 Rhodopseudomonas palustris BisA53 4360278 YP_781520.1 CDS RPE_2602 NC_008435.1 2873255 2876239 D TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: rpc:RPC_1006 glutamate synthase (NADPH), homotetrameric; putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein 2873255..2876239 Rhodopseudomonas palustris BisA53 4360279 YP_781521.1 CDS RPE_2603 NC_008435.1 2876424 2877506 R TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein, MerR; GAF domain protein; KEGG: rpc:RPC_2479 putative GAF sensor protein; putative GAF sensor protein complement(2876424..2877506) Rhodopseudomonas palustris BisA53 4360280 YP_781522.1 CDS RPE_2604 NC_008435.1 2877680 2877964 D KEGG: bja:bll4799 hypothetical protein; hypothetical protein 2877680..2877964 Rhodopseudomonas palustris BisA53 4360281 YP_781523.1 CDS RPE_2605 NC_008435.1 2877989 2879587 D PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: rpc:RPC_2481 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase 2877989..2879587 Rhodopseudomonas palustris BisA53 4360282 YP_781524.1 CDS RPE_2606 NC_008435.1 2879626 2880117 R NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(2879626..2880117) Rhodopseudomonas palustris BisA53 4360283 YP_781525.1 CDS eno NC_008435.1 2880307 2881590 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 2880307..2881590 Rhodopseudomonas palustris BisA53 4360284 YP_781526.1 CDS RPE_2608 NC_008435.1 2881683 2882819 D PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: rpc:RPC_2484 putative NADH oxidoreductase; alcohol dehydrogenase 2881683..2882819 Rhodopseudomonas palustris BisA53 4360285 YP_781527.1 CDS RPE_2609 NC_008435.1 2883016 2883627 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rpc:RPC_2485 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(2883016..2883627) Rhodopseudomonas palustris BisA53 4360286 YP_781528.1 CDS RPE_2610 NC_008435.1 2883824 2884381 D PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: rpc:RPC_2487 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 2883824..2884381 Rhodopseudomonas palustris BisA53 4360287 YP_781529.1 CDS RPE_2611 NC_008435.1 2884447 2884764 D PFAM: Septum formation initiator; KEGG: rpc:RPC_2488 septum formation initiator; septum formation initiator 2884447..2884764 Rhodopseudomonas palustris BisA53 4360288 YP_781530.1 CDS RPE_2612 NC_008435.1 2884929 2885969 D PFAM: dehydrogenase, E1 component; KEGG: rpc:RPC_2489 pyruvate dehydrogenase (lipoamide); pyruvate dehydrogenase 2884929..2885969 Rhodopseudomonas palustris BisA53 4360289 YP_781531.1 CDS RPE_2613 NC_008435.1 2885979 2886578 D hypothetical protein 2885979..2886578 Rhodopseudomonas palustris BisA53 4360290 YP_781532.1 CDS RPE_2614 NC_008435.1 2886599 2887993 D catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase; pyruvate dehydrogenase subunit beta 2886599..2887993 Rhodopseudomonas palustris BisA53 4360291 YP_781533.1 CDS RPE_2615 NC_008435.1 2887997 2888293 D KEGG: rpb:RPB_2769 hypothetical protein; hypothetical protein 2887997..2888293 Rhodopseudomonas palustris BisA53 4360292 YP_781534.1 CDS RPE_2616 NC_008435.1 2888307 2889662 D KEGG: rpc:RPC_2492 dihydrolipoamide acetyltransferase, long form; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; branched-chain alpha-keto acid dehydrogenase subunit E2 2888307..2889662 Rhodopseudomonas palustris BisA53 4360293 YP_781535.1 CDS RPE_2617 NC_008435.1 2889664 2890005 D KEGG: nwi:Nwi_1815 hypothetical protein; hypothetical protein 2889664..2890005 Rhodopseudomonas palustris BisA53 4360294 YP_781536.1 CDS RPE_2618 NC_008435.1 2890025 2891446 D E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 2890025..2891446 Rhodopseudomonas palustris BisA53 4360295 YP_781537.1 CDS RPE_2619 NC_008435.1 2891562 2892161 D KEGG: mag:amb4173 hypothetical protein; hypothetical protein 2891562..2892161 Rhodopseudomonas palustris BisA53 4360296 YP_781538.1 CDS RPE_2620 NC_008435.1 2892394 2892963 D hypothetical protein 2892394..2892963 Rhodopseudomonas palustris BisA53 4360297 YP_781539.1 CDS RPE_2621 NC_008435.1 2893001 2893789 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: rpc:RPC_2495 Sel1-like; Sel1 domain-containing protein 2893001..2893789 Rhodopseudomonas palustris BisA53 4360298 YP_781540.1 CDS RPE_2622 NC_008435.1 2893819 2894610 R TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rpd:RPD_2804 exodeoxyribonuclease III; exodeoxyribonuclease III complement(2893819..2894610) Rhodopseudomonas palustris BisA53 4360299 YP_781541.1 CDS RPE_2623 NC_008435.1 2894761 2895891 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rpc:RPC_2497 secretion protein HlyD; RND family efflux transporter MFP subunit 2894761..2895891 Rhodopseudomonas palustris BisA53 4360300 YP_781542.1 CDS RPE_2624 NC_008435.1 2895894 2899022 D PFAM: acriflavin resistance protein; KEGG: rpc:RPC_2498 acriflavin resistance protein; acriflavin resistance protein 2895894..2899022 Rhodopseudomonas palustris BisA53 4360301 YP_781543.1 CDS RPE_2625 NC_008435.1 2899030 2900085 R KEGG: rpb:RPB_2754 neurotransmitter-gated ion-channel ligand-binding; hypothetical protein complement(2899030..2900085) Rhodopseudomonas palustris BisA53 4360302 YP_781544.1 CDS RPE_2626 NC_008435.1 2900082 2901122 R KEGG: rpd:RPD_2798 hypothetical protein; hypothetical protein complement(2900082..2901122) Rhodopseudomonas palustris BisA53 4360303 YP_781545.1 CDS RPE_2627 NC_008435.1 2901366 2901590 D PFAM: protein of unknown function DUF433; KEGG: rpc:RPC_2499 protein of unknown function DUF433; hypothetical protein 2901366..2901590 Rhodopseudomonas palustris BisA53 4360304 YP_781546.1 CDS RPE_2629 NC_008435.1 2901952 2902281 R TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rpd:RPD_2797 HesB/YadR/YfhF; hypothetical protein complement(2901952..2902281) Rhodopseudomonas palustris BisA53 4360306 YP_781547.1 CDS RPE_2630 NC_008435.1 2902399 2903601 D KEGG: rpc:RPC_2507 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: putative deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; deoxyguanosinetriphosphate triphosphohydrolase 2902399..2903601 Rhodopseudomonas palustris BisA53 4360307 YP_781548.1 CDS RPE_2631 NC_008435.1 2903732 2904127 D KEGG: rpa:RPA2550 hypothetical protein; hypothetical protein 2903732..2904127 Rhodopseudomonas palustris BisA53 4360308 YP_781549.1 CDS RPE_2632 NC_008435.1 2904706 2906199 D PFAM: porin; KEGG: rpb:RPB_3036 putative Omp2b porin; porin 2904706..2906199 Rhodopseudomonas palustris BisA53 4360309 YP_781550.1 CDS RPE_2633 NC_008435.1 2906482 2908800 R PFAM: Lytic transglycosylase, catalytic; KEGG: rpc:RPC_2890 lytic transglycosylase, catalytic; lytic transglycosylase complement(2906482..2908800) Rhodopseudomonas palustris BisA53 4360310 YP_781551.1 CDS RPE_2634 NC_008435.1 2908928 2909602 R KEGG: rpc:RPC_2889 hypothetical protein; hypothetical protein complement(2908928..2909602) Rhodopseudomonas palustris BisA53 4360311 YP_781552.1 CDS RPE_2635 NC_008435.1 2909820 2910230 D Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone, to the generation of a proton gradient which is then used for ATP synthesis; NADH dehydrogenase 2909820..2910230 Rhodopseudomonas palustris BisA53 4360312 YP_781553.1 CDS RPE_2636 NC_008435.1 2910675 2911430 D KEGG: rpb:RPB_3129 secretin/TonB, short-like protein; secretin/TonB, short-like protein 2910675..2911430 Rhodopseudomonas palustris BisA53 4360313 YP_781554.1 CDS RPE_2637 NC_008435.1 2911472 2911981 D PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rpb:RPB_3128 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 factor 2911472..2911981 Rhodopseudomonas palustris BisA53 4360314 YP_781555.1 CDS RPE_2638 NC_008435.1 2912084 2913058 D PFAM: FecR protein; KEGG: rpb:RPB_3127 putative FecR; putative FecR protein 2912084..2913058 Rhodopseudomonas palustris BisA53 4360315 YP_781556.1 CDS RPE_2639 NC_008435.1 2913172 2926188 D TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: rpb:RPB_3126 filamentous haemagglutinin-like protein; filamentous hemagglutinin outer membrane protein 2913172..2926188 Rhodopseudomonas palustris BisA53 4360316 YP_781557.1 CDS RPE_2640 NC_008435.1 2926635 2927276 D KEGG: gox:GOX1578 hypothetical protein; hypothetical protein 2926635..2927276 Rhodopseudomonas palustris BisA53 4360317 YP_781558.1 CDS RPE_2641 NC_008435.1 2927279 2928499 D PFAM: ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: gox:GOX1577 ATP-dependent Clp protease ATP-binding subunit ClpA; ATPase 2927279..2928499 Rhodopseudomonas palustris BisA53 4360318 YP_781559.1 CDS RPE_2642 NC_008435.1 2928496 2930754 D hypothetical protein 2928496..2930754 Rhodopseudomonas palustris BisA53 4360319 YP_781560.1 CDS RPE_2643 NC_008435.1 2930811 2931758 D KEGG: gox:GOX1574 hypothetical protein; hypothetical protein 2930811..2931758 Rhodopseudomonas palustris BisA53 4360320 YP_781561.1 CDS RPE_2644 NC_008435.1 2931793 2931993 D KEGG: ccr:CC0185 TonB-dependent receptor; hypothetical protein 2931793..2931993 Rhodopseudomonas palustris BisA53 4360321 YP_781562.1 CDS RPE_2645 NC_008435.1 2932150 2932788 D PFAM: Secretin/TonB, short N-terminal domain; KEGG: rpb:RPB_2211 hypothetical protein; secretin/TonB short N-terminal domain-containing protein 2932150..2932788 Rhodopseudomonas palustris BisA53 4360322 YP_781563.1 CDS RPE_2646 NC_008435.1 2932785 2933393 D PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: rpb:RPB_2212 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 factor 2932785..2933393 Rhodopseudomonas palustris BisA53 4360323 YP_781564.1 CDS RPE_2647 NC_008435.1 2933390 2934367 D PFAM: FecR protein; KEGG: rpb:RPB_2213 putative FecR; putative FecR protein 2933390..2934367 Rhodopseudomonas palustris BisA53 4360324 YP_781565.1 CDS RPE_2648 NC_008435.1 2934536 2947021 D TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: rpc:RPC_2911 filamentous haemagglutinin-like; filamentous hemagglutinin outer membrane protein 2934536..2947021 Rhodopseudomonas palustris BisA53 4360325 YP_781566.1 CDS RPE_2649 NC_008435.1 2947611 2948324 D TIGRFAM: TonB family protein; KEGG: rpb:RPB_2211 hypothetical protein; TonB family protein 2947611..2948324 Rhodopseudomonas palustris BisA53 4360326 YP_781567.1 CDS RPE_2650 NC_008435.1 2948321 2948926 D PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: rpb:RPB_2212 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 factor 2948321..2948926 Rhodopseudomonas palustris BisA53 4360327 YP_781568.1 CDS RPE_2651 NC_008435.1 2948923 2949897 D PFAM: FecR protein; KEGG: rpb:RPB_2213 putative FecR; putative FecR protein 2948923..2949897 Rhodopseudomonas palustris BisA53 4360328 YP_781569.1 CDS RPE_2652 NC_008435.1 2949934 2962935 D TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: bur:Bcep18194_B1068 haemagglutinin-like; filamentous hemagglutinin outer membrane protein 2949934..2962935 Rhodopseudomonas palustris BisA53 4360329 YP_781570.1 CDS RPE_2653 NC_008435.1 2963192 2963467 R KEGG: mag:amb3151 transposase and inactivated derivative; hypothetical protein complement(2963192..2963467) Rhodopseudomonas palustris BisA53 4360330 YP_781571.1 CDS RPE_2654 NC_008435.1 2963672 2964472 D PFAM: Secretin/TonB, short N-terminal domain; KEGG: rpb:RPB_3129 secretin/TonB, short-like protein; secretin/TonB short N-terminal domain-containing protein 2963672..2964472 Rhodopseudomonas palustris BisA53 4360331 YP_781572.1 CDS RPE_2655 NC_008435.1 2964475 2964999 D PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rpb:RPB_3128 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 factor 2964475..2964999 Rhodopseudomonas palustris BisA53 4360332 YP_781573.1 CDS RPE_2656 NC_008435.1 2965035 2966075 D PFAM: FecR protein; KEGG: rpc:RPC_2904 putative FecR; putative FecR protein 2965035..2966075 Rhodopseudomonas palustris BisA53 4360333 YP_781574.1 CDS RPE_2657 NC_008435.1 2966258 2979880 D TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: rpc:RPC_2997 filamentous haemagglutinin-like; filamentous hemagglutinin outer membrane protein 2966258..2979880 Rhodopseudomonas palustris BisA53 4360334 YP_781575.1 CDS RPE_2658 NC_008435.1 2979900 2980487 R TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: rpc:RPC_3004 putative general secretion pathway protein J; prepilin-type cleavage/methylation-like protein complement(2979900..2980487) Rhodopseudomonas palustris BisA53 4360335 YP_781576.1 CDS RPE_2659 NC_008435.1 2980519 2980965 R TIGRFAM: Prepilin-type cleavage/methylation-like; prepilin-type cleavage/methylation-like protein complement(2980519..2980965) Rhodopseudomonas palustris BisA53 4360336 YP_781577.1 CDS RPE_2660 NC_008435.1 2980937 2981419 R KEGG: bja:bll6018 probable general secretion pathway protein H precursor; putative general secretion pathway protein H complement(2980937..2981419) Rhodopseudomonas palustris BisA53 4360337 YP_781578.1 CDS RPE_2661 NC_008435.1 2981394 2981864 R TIGRFAM: general secretion pathway protein G; PFAM: secretion system protein G; KEGG: bja:bll6019 probable general secretion pathway protein G precursor; general secretion pathway protein G complement(2981394..2981864) Rhodopseudomonas palustris BisA53 4360338 YP_781579.1 CDS RPE_2662 NC_008435.1 2981881 2983083 R PFAM: type II secretion system protein; KEGG: bja:bll6020 probable general secretion pathway protein F; type II secretion system protein complement(2981881..2983083) Rhodopseudomonas palustris BisA53 4360339 YP_781580.1 CDS RPE_2663 NC_008435.1 2983274 2984956 R PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: bja:bll6021 general secretion pathway protein E; type II secretion system protein E complement(2983274..2984956) Rhodopseudomonas palustris BisA53 4360340 YP_781581.1 CDS RPE_2664 NC_008435.1 2984968 2985411 R KEGG: rpc:RPC_2998 hypothetical protein; hypothetical protein complement(2984968..2985411) Rhodopseudomonas palustris BisA53 4360341 YP_781582.1 CDS RPE_2665 NC_008435.1 2985408 2985965 R hypothetical protein complement(2985408..2985965) Rhodopseudomonas palustris BisA53 4360342 YP_781583.1 CDS RPE_2666 NC_008435.1 2985962 2986996 R PFAM: Fimbrial assembly family protein; KEGG: bja:bll6015 putative general secretory pathway protein L; fimbrial assembly family protein complement(2985962..2986996) Rhodopseudomonas palustris BisA53 4360343 YP_781584.1 CDS RPE_2667 NC_008435.1 2987016 2987891 R KEGG: bja:bll6016 putative general secretory pathway protein K; hypothetical protein complement(2987016..2987891) Rhodopseudomonas palustris BisA53 4360344 YP_781585.1 CDS RPE_2668 NC_008435.1 2987888 2988568 R KEGG: bja:blr6023 general secretion pathway protein O; general secretion pathway protein O complement(2987888..2988568) Rhodopseudomonas palustris BisA53 4360345 YP_781586.1 CDS RPE_2669 NC_008435.1 2988588 2990957 R TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: rpc:RPC_3010 type II and III secretion system protein; general secretion pathway protein D complement(2988588..2990957) Rhodopseudomonas palustris BisA53 4360346 YP_781587.1 CDS RPE_2670 NC_008435.1 2991107 2991751 R PFAM: Sigma-70, region 4 type 2; KEGG: rpb:RPB_2205 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 factor complement(2991107..2991751) Rhodopseudomonas palustris BisA53 4360347 YP_781588.1 CDS RPE_2671 NC_008435.1 2991833 2993845 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1067 TPR repeat protein; hypothetical protein complement(2991833..2993845) Rhodopseudomonas palustris BisA53 4360348 YP_781589.1 CDS RPE_2672 NC_008435.1 2993847 2996126 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:blr5623 TPR domain protein; hypothetical protein complement(2993847..2996126) Rhodopseudomonas palustris BisA53 4360349 YP_781590.1 CDS RPE_2673 NC_008435.1 2996468 2998378 D KEGG: rpc:RPC_2999 hypothetical protein; hypothetical protein 2996468..2998378 Rhodopseudomonas palustris BisA53 4360350 YP_781591.1 CDS RPE_2674 NC_008435.1 2998465 2999460 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: rpa:RPA0173 putative sugar nucleotide dehydratase; NAD-dependent epimerase/dehydratase 2998465..2999460 Rhodopseudomonas palustris BisA53 4360351 YP_781592.1 CDS RPE_2675 NC_008435.1 2999607 2999921 D KEGG: rpb:RPB_3126 filamentous haemagglutinin-like protein; hypothetical protein 2999607..2999921 Rhodopseudomonas palustris BisA53 4360352 YP_781593.1 CDS RPE_2676 NC_008435.1 3000390 3000725 D KEGG: rpc:RPC_2931 hypothetical protein; hypothetical protein 3000390..3000725 Rhodopseudomonas palustris BisA53 4360354 YP_781594.1 CDS RPE_2677 NC_008435.1 3000780 3001190 D KEGG: rpc:RPC_2930 hypothetical protein; hypothetical protein 3000780..3001190 Rhodopseudomonas palustris BisA53 4360355 YP_781595.1 CDS RPE_2678 NC_008435.1 3001382 3002362 D TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: rpc:RPC_2929 arginase; arginase 3001382..3002362 Rhodopseudomonas palustris BisA53 4360356 YP_781596.1 CDS RPE_2679 NC_008435.1 3002410 3002724 D hypothetical protein 3002410..3002724 Rhodopseudomonas palustris BisA53 4360357 YP_781597.1 CDS RPE_2680 NC_008435.1 3002726 3002983 R hypothetical protein complement(3002726..3002983) Rhodopseudomonas palustris BisA53 4360358 YP_781598.1 CDS RPE_2681 NC_008435.1 3003219 3003419 D KEGG: rpc:RPC_2927 hypothetical protein; hypothetical protein 3003219..3003419 Rhodopseudomonas palustris BisA53 4360359 YP_781599.1 CDS RPE_2682 NC_008435.1 3003825 3004859 D catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 3003825..3004859 Rhodopseudomonas palustris BisA53 4360360 YP_781600.1 CDS RPE_2683 NC_008435.1 3004880 3005755 D PFAM: phosphoribulokinase/uridine kinase; KEGG: rpc:RPC_2898 phosphoribulokinase; phosphoribulokinase 3004880..3005755 Rhodopseudomonas palustris BisA53 4360361 YP_781601.1 CDS RPE_2684 NC_008435.1 3005868 3007892 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 3005868..3007892 Rhodopseudomonas palustris BisA53 4360362 YP_781602.1 CDS RPE_2685 NC_008435.1 3007937 3009022 D class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 3007937..3009022 Rhodopseudomonas palustris BisA53 4360363 YP_781603.1 CDS RPE_2686 NC_008435.1 3009079 3010461 D catalyzes the carboxylation of D-ribulose 1,5-bisphosphate in carbon dioxide fixation; ribulose bisphosphate carboxylase 3009079..3010461 Rhodopseudomonas palustris BisA53 4360364 YP_781604.1 CDS RPE_2687 NC_008435.1 3010632 3011318 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpc:RPC_2894 HAD-superfamily hydrolase subfamily IA, variant 3; HAD family hydrolase 3010632..3011318 Rhodopseudomonas palustris BisA53 4360365 YP_781605.1 CDS RPE_2688 NC_008435.1 3011583 3011903 D KEGG: rpc:RPC_0662 hypothetical protein; hypothetical protein 3011583..3011903 Rhodopseudomonas palustris BisA53 4360366 YP_781606.1 CDS RPE_2689 NC_008435.1 3011943 3012362 R KEGG: rpa:RPA4550 hypothetical protein; hypothetical protein complement(3011943..3012362) Rhodopseudomonas palustris BisA53 4360367 YP_781607.1 CDS RPE_2690 NC_008435.1 3012463 3012687 R KEGG: rpd:RPD_1466 hypothetical protein; hypothetical protein complement(3012463..3012687) Rhodopseudomonas palustris BisA53 4360368 YP_781608.1 CDS argS NC_008435.1 3013289 3015082 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 3013289..3015082 Rhodopseudomonas palustris BisA53 4360370 YP_781609.1 CDS RPE_2692 NC_008435.1 3015189 3016580 D PFAM: Sporulation domain protein; KEGG: rpc:RPC_2509 sporulation related; sporulation domain-containing protein 3015189..3016580 Rhodopseudomonas palustris BisA53 4360371 YP_781610.1 CDS RPE_2693 NC_008435.1 3016626 3017654 D PFAM: glycoside hydrolase, family 3 domain protein; KEGG: rpb:RPB_2748 beta-N-acetylhexosaminidase; Beta-N-acetylhexosaminidase 3016626..3017654 Rhodopseudomonas palustris BisA53 4360372 YP_781611.1 CDS RPE_2694 NC_008435.1 3017651 3018490 D PFAM: chromosome segregation and condensation protein ScpA; KEGG: rpc:RPC_2511 chromosome segregation and condensation protein ScpA; chromosome segregation and condensation protein ScpA 3017651..3018490 Rhodopseudomonas palustris BisA53 4360373 YP_781612.1 CDS RPE_2695 NC_008435.1 3018512 3019240 D TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: rpc:RPC_2512 putative transcriptional regulator; putative transcriptional regulator 3018512..3019240 Rhodopseudomonas palustris BisA53 4360374 YP_781613.1 CDS tatA NC_008435.1 3019353 3019589 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 3019353..3019589 Rhodopseudomonas palustris BisA53 4360375 YP_781614.1 CDS RPE_2697 NC_008435.1 3019713 3020240 D TIGRFAM: twin-arginine translocation protein, TatB subunit; KEGG: rpc:RPC_2514 twin-arginine translocation protein TatB; twin-arginine translocation protein TatB 3019713..3020240 Rhodopseudomonas palustris BisA53 4360376 YP_781615.1 CDS RPE_2698 NC_008435.1 3020237 3021061 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: rpb:RPB_2743 sec-independent protein translocase TatC; Sec-independent protein translocase TatC 3020237..3021061 Rhodopseudomonas palustris BisA53 4360377 YP_781616.1 CDS RPE_2699 NC_008435.1 3021152 3021526 D KEGG: rpc:RPC_2516 hypothetical protein; hypothetical protein 3021152..3021526 Rhodopseudomonas palustris BisA53 4360378 YP_781617.1 CDS RPE_2700 NC_008435.1 3021753 3023183 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 3021753..3023183 Rhodopseudomonas palustris BisA53 4360379 YP_781618.1 CDS RPE_2701 NC_008435.1 3023335 3023730 D KEGG: rpc:RPC_1548 hypothetical protein; hypothetical protein 3023335..3023730 Rhodopseudomonas palustris BisA53 4360380 YP_781619.1 CDS RPE_2702 NC_008435.1 3023955 3024545 R KEGG: rpc:RPC_2518 hypothetical protein; hypothetical protein complement(3023955..3024545) Rhodopseudomonas palustris BisA53 4360381 YP_781620.1 CDS surE NC_008435.1 3024713 3025480 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 3024713..3025480 Rhodopseudomonas palustris BisA53 4360382 YP_781621.1 CDS RPE_2704 NC_008435.1 3025655 3026023 R PFAM: response regulator receiver; KEGG: rpc:RPC_2520 response regulator receiver domain protein (CheY-like); response regulator receiver protein complement(3025655..3026023) Rhodopseudomonas palustris BisA53 4360383 YP_781622.1 CDS RPE_2705 NC_008435.1 3026222 3026869 D KEGG: rpc:RPC_2521 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11; protein-L-isoaspartate O-methyltransferase 3026222..3026869 Rhodopseudomonas palustris BisA53 4360384 YP_781623.1 CDS RPE_2706 NC_008435.1 3027031 3028410 D PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: rpc:RPC_2522 peptidase M23B; peptidase M23B 3027031..3028410 Rhodopseudomonas palustris BisA53 4360385 YP_781624.1 CDS RPE_2707 NC_008435.1 3028788 3029177 R PFAM: protein of unknown function DUF1232; KEGG: rpc:RPC_2523 protein of unknown function DUF1232; hypothetical protein complement(3028788..3029177) Rhodopseudomonas palustris BisA53 4360386 YP_781625.1 CDS phhB NC_008435.1 3029245 3029550 R 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase complement(3029245..3029550) Rhodopseudomonas palustris BisA53 4360387 YP_781626.1 CDS RPE_2709 NC_008435.1 3029719 3031149 D TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: rpc:RPC_2525 TRAP transporter solute receptor, TAXI family; TRAP transporter solute receptor TAXI family protein 3029719..3031149 Rhodopseudomonas palustris BisA53 4360388 YP_781627.1 CDS RPE_2710 NC_008435.1 3031630 3033453 D TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: rpb:RPB_0103 GTPase; GTP-binding protein TypA 3031630..3033453 Rhodopseudomonas palustris BisA53 4360389 YP_781628.1 CDS RPE_2711 NC_008435.1 3033740 3034210 D PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: rpc:RPC_2532 peptidylprolyl isomerase; peptidylprolyl isomerase 3033740..3034210 Rhodopseudomonas palustris BisA53 4360390 YP_781629.1 CDS RPE_2712 NC_008435.1 3034654 3035217 R hypothetical protein complement(3034654..3035217) Rhodopseudomonas palustris BisA53 4360391 YP_781630.1 CDS RPE_2713 NC_008435.1 3035267 3035446 R PFAM: antenna complex, alpha/beta subunit; KEGG: rpa:RPA1492 light harvesting protein B-800-850, alpha chain E (antenna pigment protein, alpha chain E) (LH II-E alpha); antenna complex subunit alpha/beta complement(3035267..3035446) Rhodopseudomonas palustris BisA53 4360392 YP_781631.1 CDS RPE_2714 NC_008435.1 3035472 3035642 R PFAM: antenna complex, alpha/beta subunit; KEGG: rpb:RPB_4448 antenna complex, alpha/beta subunit; antenna complex subunit alpha/beta complement(3035472..3035642) Rhodopseudomonas palustris BisA53 4360393 YP_781632.1 CDS RPE_2715 NC_008435.1 3036064 3036246 R KEGG: rpb:RPB_2190 hypothetical protein; hypothetical protein complement(3036064..3036246) Rhodopseudomonas palustris BisA53 4360394 YP_781633.1 CDS RPE_2716 NC_008435.1 3036413 3036715 R hypothetical protein complement(3036413..3036715) Rhodopseudomonas palustris BisA53 4360395 YP_781634.1 CDS RPE_2717 NC_008435.1 3037331 3037627 R KEGG: fra:Francci3_1958 integrase; integrase complement(3037331..3037627) Rhodopseudomonas palustris BisA53 4360396 YP_781635.1 CDS RPE_2718 NC_008435.1 3037930 3038751 D PFAM: Secretin/TonB, short N-terminal domain; KEGG: rpb:RPB_3129 secretin/TonB, short-like protein; secretin/TonB short N-terminal domain-containing protein 3037930..3038751 Rhodopseudomonas palustris BisA53 4360397 YP_781636.1 CDS RPE_2719 NC_008435.1 3038915 3039460 D PFAM: sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rpb:RPB_3128 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 factor 3038915..3039460 Rhodopseudomonas palustris BisA53 4360398 YP_781637.1 CDS RPE_2720 NC_008435.1 3039537 3040517 D PFAM: FecR protein; KEGG: rpb:RPB_3127 putative FecR; putative FecR protein 3039537..3040517 Rhodopseudomonas palustris BisA53 4360399 YP_781638.1 CDS RPE_2721 NC_008435.1 3040637 3052345 D KEGG: bur:Bcep18194_B1068 haemagglutinin-like; hypothetical protein 3040637..3052345 Rhodopseudomonas palustris BisA53 4360400 YP_781639.1 CDS RPE_2722 NC_008435.1 3053125 3058341 D PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: rpc:RPC_2542 alpha-2-macroglobulin-like; alpha-2-macroglobulin domain-containing protein 3053125..3058341 Rhodopseudomonas palustris BisA53 4360402 YP_781640.1 CDS RPE_2723 NC_008435.1 3058338 3060530 D TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; Penicillin-binding domain protein; KEGG: rpa:RPA2554 penicillin binding protein; penicillin-binding protein 1C 3058338..3060530 Rhodopseudomonas palustris BisA53 4360403 YP_781641.1 CDS RPE_2724 NC_008435.1 3060581 3062320 D PFAM: glycosyl transferase, family 39; KEGG: rpc:RPC_2544 glycosyl transferase, family 39; glycosyl transferase family protein 3060581..3062320 Rhodopseudomonas palustris BisA53 4360404 YP_781642.1 CDS RPE_2725 NC_008435.1 3062331 3063176 D PFAM: phosphoesterase, PA-phosphatase related; KEGG: rpc:RPC_2545 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 3062331..3063176 Rhodopseudomonas palustris BisA53 4360405 YP_781643.1 CDS RPE_2726 NC_008435.1 3063249 3063989 D PFAM: glycosyl transferase, family 2; KEGG: rpc:RPC_2546 glycosyl transferase, family 2; glycosyl transferase family protein 3063249..3063989 Rhodopseudomonas palustris BisA53 4360406 YP_781644.1 CDS RPE_2727 NC_008435.1 3063989 3064327 D PFAM: lipid A biosynthesis domain protein; KEGG: rpb:RPB_2914 lipid A biosynthesis-like; lipid A biosynthesis domain-containing protein 3063989..3064327 Rhodopseudomonas palustris BisA53 4360407 YP_781645.1 CDS RPE_2728 NC_008435.1 3064354 3065541 R TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: rpc:RPC_2548 cystathionine beta-lyase; cystathionine beta-lyase complement(3064354..3065541) Rhodopseudomonas palustris BisA53 4360408 YP_781646.1 CDS RPE_2729 NC_008435.1 3065874 3066887 D TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein, family 3; KEGG: rpc:RPC_2549 lysine-arginine-ornithine-binding periplasmic protein; cationic amino acid ABC transporter periplasmic binding protein 3065874..3066887 Rhodopseudomonas palustris BisA53 4360409 YP_781647.1 CDS RPE_2730 NC_008435.1 3066906 3068111 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_2550 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 3066906..3068111 Rhodopseudomonas palustris BisA53 4360410 YP_781648.1 CDS RPE_2731 NC_008435.1 3068108 3069610 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_2551 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 3068108..3069610 Rhodopseudomonas palustris BisA53 4360411 YP_781649.1 CDS RPE_2732 NC_008435.1 3069627 3070367 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_2561 ABC transporter related; ABC transporter-like protein 3069627..3070367 Rhodopseudomonas palustris BisA53 4360412 YP_781650.1 CDS RPE_2733 NC_008435.1 3071093 3071377 R KEGG: rpd:RPD_2562 hypothetical protein; hypothetical protein complement(3071093..3071377) Rhodopseudomonas palustris BisA53 4360413 YP_781651.1 CDS RPE_2734 NC_008435.1 3071694 3072731 R CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A complement(3071694..3072731) Rhodopseudomonas palustris BisA53 4360414 YP_781652.1 CDS RPE_2735 NC_008435.1 3072840 3074066 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_2554 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase complement(3072840..3074066) Rhodopseudomonas palustris BisA53 4360415 YP_781653.1 CDS RPE_2736 NC_008435.1 3074189 3075016 R PFAM: protein of unknown function DUF1365; KEGG: rpc:RPC_2555 protein of unknown function DUF1365; hypothetical protein complement(3074189..3075016) Rhodopseudomonas palustris BisA53 4360416 YP_781654.1 CDS RPE_2737 NC_008435.1 3075020 3076330 R PFAM: amine oxidase; KEGG: rpb:RPB_2904 amine oxidase; amine oxidase complement(3075020..3076330) Rhodopseudomonas palustris BisA53 4360417 YP_781655.1 CDS RPE_2738 NC_008435.1 3076334 3076576 D hypothetical protein 3076334..3076576 Rhodopseudomonas palustris BisA53 4360418 YP_781656.1 CDS RPE_2739 NC_008435.1 3076743 3078164 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rpc:RPC_2557 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein 3076743..3078164 Rhodopseudomonas palustris BisA53 4360419 YP_781657.1 CDS RPE_2740 NC_008435.1 3078154 3079434 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rpc:RPC_2558 secretion protein HlyD; RND family efflux transporter MFP subunit 3078154..3079434 Rhodopseudomonas palustris BisA53 4360420 YP_781658.1 CDS RPE_2741 NC_008435.1 3079448 3082570 D PFAM: acriflavin resistance protein; KEGG: rpc:RPC_2559 acriflavin resistance protein; acriflavin resistance protein 3079448..3082570 Rhodopseudomonas palustris BisA53 4360421 YP_781659.1 CDS RPE_2742 NC_008435.1 3082570 3085674 D PFAM: acriflavin resistance protein; KEGG: rpc:RPC_2560 acriflavin resistance protein; acriflavin resistance protein 3082570..3085674 Rhodopseudomonas palustris BisA53 4360422 YP_781660.1 CDS RPE_2743 NC_008435.1 3085723 3086457 D PFAM: DTW domain containing protein; KEGG: rpc:RPC_2561 DTW; DTW domain-containing protein 3085723..3086457 Rhodopseudomonas palustris BisA53 4360423 YP_781661.1 CDS RPE_2744 NC_008435.1 3086954 3087154 D KEGG: bja:bsl2206 hypothetical protein; hypothetical protein 3086954..3087154 Rhodopseudomonas palustris BisA53 4360425 YP_781662.1 CDS RPE_2745 NC_008435.1 3087435 3087611 R KEGG: rpc:RPC_2563 hypothetical protein; hypothetical protein complement(3087435..3087611) Rhodopseudomonas palustris BisA53 4360426 YP_781663.1 CDS RPE_2746 NC_008435.1 3087825 3088190 R KEGG: rpc:RPC_2564 hypothetical protein; hypothetical protein complement(3087825..3088190) Rhodopseudomonas palustris BisA53 4360427 YP_781664.1 CDS RPE_2747 NC_008435.1 3089123 3089791 D PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_2567 protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 3089123..3089791 Rhodopseudomonas palustris BisA53 4360429 YP_781665.1 CDS RPE_2748 NC_008435.1 3089980 3091377 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: rpc:RPC_2568 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein 3089980..3091377 Rhodopseudomonas palustris BisA53 4360430 YP_781666.1 CDS RPE_2749 NC_008435.1 3091719 3092486 D KEGG: rpb:RPB_2893 hypothetical protein; hypothetical protein 3091719..3092486 Rhodopseudomonas palustris BisA53 4360431 YP_781667.1 CDS valS NC_008435.1 3092595 3095492 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 3092595..3095492 Rhodopseudomonas palustris BisA53 4360432 YP_781668.1 CDS RPE_2751 NC_008435.1 3095603 3096235 R responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase complement(3095603..3096235) Rhodopseudomonas palustris BisA53 4360433 YP_781669.1 CDS RPE_2752 NC_008435.1 3096386 3097345 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 3096386..3097345 Rhodopseudomonas palustris BisA53 4360434 YP_781670.1 CDS RPE_2753 NC_008435.1 3097357 3097833 D PFAM: cyclase/dehydrase; KEGG: rpc:RPC_2573 cyclase/dehydrase; cyclase/dehydrase 3097357..3097833 Rhodopseudomonas palustris BisA53 4360435 YP_781671.1 CDS RPE_2754 NC_008435.1 3097846 3098460 R PFAM: CinA domain protein; KEGG: rpc:RPC_2574 CinA-like; CinA domain-containing protein complement(3097846..3098460) Rhodopseudomonas palustris BisA53 4360436 YP_781672.1 CDS RPE_2755 NC_008435.1 3098460 3099656 R TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MECDP-synthase; KEGG: rpc:RPC_2575 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(3098460..3099656) Rhodopseudomonas palustris BisA53 4360437 YP_781673.1 CDS RPE_2756 NC_008435.1 3099893 3100927 D TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: rpc:RPC_2576 dihydrouridine synthase TIM-barrel protein nifR3; nifR3 family TIM-barrel protein 3099893..3100927 Rhodopseudomonas palustris BisA53 4360438 YP_781674.1 CDS RPE_2757 NC_008435.1 3100924 3102093 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: rpc:RPC_2577 signal transduction histidine kinase, nitrogen specific, NtrB; signal transduction histidine kinase, nitrogen specific, NtrB 3100924..3102093 Rhodopseudomonas palustris BisA53 4360439 YP_781675.1 CDS RPE_2758 NC_008435.1 3102103 3103545 D KEGG: rpc:RPC_2578 nitrogen metabolism transcriptional regulator, NtrC, fis family; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator NtrC 3102103..3103545 Rhodopseudomonas palustris BisA53 4360440 YP_781676.1 CDS RPE_2759 NC_008435.1 3103729 3106020 D KEGG: rpc:RPC_2579 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 3103729..3106020 Rhodopseudomonas palustris BisA53 4360441 YP_781677.1 CDS RPE_2760 NC_008435.1 3106036 3107406 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: rpc:RPC_2580 two component, sigma54 specific, transcriptional regulator, fis family; two component sigma54 specific Fis family transcriptional regulator 3106036..3107406 Rhodopseudomonas palustris BisA53 4360442 YP_781678.1 CDS RPE_2761 NC_008435.1 3107436 3108293 D catalyzes the transamination of D-amino acids and their alpha-keto acids; D-amino acid aminotransferase 3107436..3108293 Rhodopseudomonas palustris BisA53 4360443 YP_781679.1 CDS hfq NC_008435.1 3108483 3108731 D Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 3108483..3108731 Rhodopseudomonas palustris BisA53 4360444 YP_781680.1 CDS RPE_2763 NC_008435.1 3108743 3110110 D PFAM: GTP-binding protein, HSR1-related; KEGG: rpc:RPC_2583 GTP-binding protein, HSR1-related; HSR1-like GTP-binding protein 3108743..3110110 Rhodopseudomonas palustris BisA53 4360445 YP_781681.1 CDS RPE_2764 NC_008435.1 3110283 3113039 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 3110283..3113039 Rhodopseudomonas palustris BisA53 4360446 YP_781682.1 CDS RPE_2765 NC_008435.1 3113143 3113400 R KEGG: rpc:RPC_2587 hypothetical protein; hypothetical protein complement(3113143..3113400) Rhodopseudomonas palustris BisA53 4360447 YP_781683.1 CDS coaD NC_008435.1 3113720 3114217 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 3113720..3114217 Rhodopseudomonas palustris BisA53 4360448 YP_781684.1 CDS RPE_2767 NC_008435.1 3114245 3114808 D PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: rpc:RPC_2589 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 3114245..3114808 Rhodopseudomonas palustris BisA53 4360449 YP_781685.1 CDS RPE_2768 NC_008435.1 3114818 3115258 D KEGG: rpd:RPD_2600 hypothetical protein; hypothetical protein 3114818..3115258 Rhodopseudomonas palustris BisA53 4360450 YP_781686.1 CDS RPE_2769 NC_008435.1 3115255 3115704 D PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: rpc:RPC_2590 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 3115255..3115704 Rhodopseudomonas palustris BisA53 4360451 YP_781687.1 CDS queA NC_008435.1 3115798 3116874 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 3115798..3116874 Rhodopseudomonas palustris BisA53 4360452 YP_781688.1 CDS tgt NC_008435.1 3116871 3118004 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 3116871..3118004 Rhodopseudomonas palustris BisA53 4360453 YP_781689.1 CDS RPE_2772 NC_008435.1 3118027 3118245 R KEGG: rpd:RPD_2604 hypothetical protein; hypothetical protein complement(3118027..3118245) Rhodopseudomonas palustris BisA53 4360454 YP_781690.1 CDS RPE_2773 NC_008435.1 3118280 3118528 R hypothetical protein complement(3118280..3118528) Rhodopseudomonas palustris BisA53 4360455 YP_781691.1 CDS RPE_2774 NC_008435.1 3118558 3119538 D TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: rpc:RPC_2594 cysteine synthase A; cysteine synthase 3118558..3119538 Rhodopseudomonas palustris BisA53 4360456 YP_781692.1 CDS RPE_2775 NC_008435.1 3119616 3119855 D KEGG: rpc:RPC_2595 hypothetical protein; hypothetical protein 3119616..3119855 Rhodopseudomonas palustris BisA53 4360457 YP_781693.1 CDS RPE_2776 NC_008435.1 3120132 3120329 D KEGG: rpb:RPB_2864 hypothetical protein; hypothetical protein 3120132..3120329 Rhodopseudomonas palustris BisA53 4360458 YP_781694.1 CDS RPE_2777 NC_008435.1 3120426 3120791 R KEGG: rpc:RPC_2598 hypothetical protein; hypothetical protein complement(3120426..3120791) Rhodopseudomonas palustris BisA53 4360459 YP_781695.1 CDS RPE_2778 NC_008435.1 3120922 3121530 R PFAM: Collagen triple helix repeat; KEGG: rpc:RPC_2599 collagen triple helix repeat; triple helix repeat-containing collagen complement(3120922..3121530) Rhodopseudomonas palustris BisA53 4360460 YP_781696.1 CDS RPE_2779 NC_008435.1 3122169 3122591 D hypothetical protein 3122169..3122591 Rhodopseudomonas palustris BisA53 4360461 YP_781697.1 CDS RPE_2780 NC_008435.1 3122914 3125733 R PFAM: glycosyl transferase, family 2; KEGG: rpc:RPC_2600 glycosyl transferase, family 2; glycosyl transferase family protein complement(3122914..3125733) Rhodopseudomonas palustris BisA53 4360463 YP_781698.1 CDS RPE_2781 NC_008435.1 3125916 3126473 R TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpc:RPC_2601 hypothetical protein; hypothetical protein complement(3125916..3126473) Rhodopseudomonas palustris BisA53 4360464 YP_781699.1 CDS RPE_2782 NC_008435.1 3126679 3128337 D KEGG: rpc:RPC_2602 putative beta (1-6) glucans synthase; putative beta (1-6) glucans synthase 3126679..3128337 Rhodopseudomonas palustris BisA53 4360465 YP_781700.1 CDS RPE_2783 NC_008435.1 3128297 3128677 R KEGG: rpc:RPC_2603 hypothetical protein; hypothetical protein complement(3128297..3128677) Rhodopseudomonas palustris BisA53 4360466 YP_781701.1 CDS RPE_2784 NC_008435.1 3128742 3130139 R KEGG: rpc:RPC_2604 hypothetical protein; hypothetical protein complement(3128742..3130139) Rhodopseudomonas palustris BisA53 4360467 YP_781702.1 CDS glmU NC_008435.1 3130307 3131665 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 3130307..3131665 Rhodopseudomonas palustris BisA53 4360468 YP_781703.1 CDS RPE_2786 NC_008435.1 3131814 3133643 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 3131814..3133643 Rhodopseudomonas palustris BisA53 4360469 YP_781704.1 CDS RPE_2787 NC_008435.1 3133887 3134690 D PFAM: protein of unknown function DUF502; KEGG: rpd:RPD_2619 protein of unknown function DUF502; hypothetical protein 3133887..3134690 Rhodopseudomonas palustris BisA53 4360470 YP_781705.1 CDS RPE_2788 NC_008435.1 3134701 3136800 R PFAM: helicase domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; DEAD/DEAH box helicase domain protein; KEGG: rpc:RPC_2608 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase complement(3134701..3136800) Rhodopseudomonas palustris BisA53 4360471 YP_781706.1 CDS RPE_2789 NC_008435.1 3136959 3137249 D PFAM: protein of unknown function DUF339; KEGG: rpd:RPD_2621 protein of unknown function DUF339; hypothetical protein 3136959..3137249 Rhodopseudomonas palustris BisA53 4360472 YP_781707.1 CDS RPE_2790 NC_008435.1 3137246 3140785 D TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: rpc:RPC_2610 transcription-repair coupling factor; transcription-repair coupling factor 3137246..3140785 Rhodopseudomonas palustris BisA53 4360473 YP_781708.1 CDS RPE_2791 NC_008435.1 3140792 3142027 R KEGG: rpc:RPC_2611 hypothetical protein; hypothetical protein complement(3140792..3142027) Rhodopseudomonas palustris BisA53 4360474 YP_781709.1 CDS RPE_2792 NC_008435.1 3142080 3143612 R KEGG: rpc:RPC_2612 putative acid-CoA ligase; putative acid-CoA ligase complement(3142080..3143612) Rhodopseudomonas palustris BisA53 4360475 YP_781710.1 CDS RPE_2793 NC_008435.1 3143617 3145470 R PFAM: extracellular solute-binding protein, family 5; KEGG: rpc:RPC_2613 extracellular solute-binding protein, family 5; extracellular solute-binding protein complement(3143617..3145470) Rhodopseudomonas palustris BisA53 4360476 YP_781711.1 CDS RPE_2794 NC_008435.1 3145705 3146481 D PFAM: Invasion associated locus B family protein; KEGG: rpc:RPC_2614 invasion associated locus B; invasion associated locus B 3145705..3146481 Rhodopseudomonas palustris BisA53 4360477 YP_781712.1 CDS RPE_2795 NC_008435.1 3146577 3146909 R TIGRFAM: hemimethylated DNA binding protein; KEGG: rpa:RPA2669 hypothetical protein; hemimethylated DNA-binding region complement(3146577..3146909) Rhodopseudomonas palustris BisA53 4360478 YP_781713.1 CDS RPE_2796 NC_008435.1 3147011 3147973 D PFAM: Auxin Efflux Carrier; KEGG: rpc:RPC_2616 auxin efflux carrier; auxin efflux carrier 3147011..3147973 Rhodopseudomonas palustris BisA53 4360479 YP_781714.1 CDS RPE_2797 NC_008435.1 3147982 3149184 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: rpc:RPC_2617 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(3147982..3149184) Rhodopseudomonas palustris BisA53 4360480 YP_781715.1 CDS RPE_2798 NC_008435.1 3149303 3150037 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rpc:RPC_2618 phosphatidylcholine synthase; phosphatidylcholine synthase 3149303..3150037 Rhodopseudomonas palustris BisA53 4360481 YP_781716.1 CDS RPE_2799 NC_008435.1 3150034 3150789 D PFAM: Integral membrane protein TerC; KEGG: bja:bll4584 hypothetical protein; integral membrane protein TerC 3150034..3150789 Rhodopseudomonas palustris BisA53 4360482 YP_781717.1 CDS RPE_2800 NC_008435.1 3150844 3151818 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpc:RPC_2619 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 3150844..3151818 Rhodopseudomonas palustris BisA53 4360483 YP_781718.1 CDS RPE_2801 NC_008435.1 3152618 3152824 D KEGG: rpd:RPD_2667 hypothetical protein; hypothetical protein 3152618..3152824 Rhodopseudomonas palustris BisA53 4360484 YP_781719.1 CDS RPE_2802 NC_008435.1 3152885 3154705 D KEGG: dar:Daro_1107 hypothetical protein; hypothetical protein 3152885..3154705 Rhodopseudomonas palustris BisA53 4360485 YP_781720.1 CDS RPE_2803 NC_008435.1 3154772 3154966 R PFAM: plasmid stabilization system; plasmid stabilization system protein complement(3154772..3154966) Rhodopseudomonas palustris BisA53 4360486 YP_781721.1 CDS RPE_2804 NC_008435.1 3155054 3155341 R KEGG: rpc:RPC_2160 hypothetical protein; hypothetical protein complement(3155054..3155341) Rhodopseudomonas palustris BisA53 4360487 YP_781722.1 CDS RPE_2805 NC_008435.1 3155618 3155827 R KEGG: sme:SMc00686 hypothetical protein; hypothetical protein complement(3155618..3155827) Rhodopseudomonas palustris BisA53 4360488 YP_781723.1 CDS RPE_2806 NC_008435.1 3155969 3156403 R KEGG: rpc:RPC_2657 hypothetical protein; hypothetical protein complement(3155969..3156403) Rhodopseudomonas palustris BisA53 4360489 YP_781724.1 CDS RPE_2807 NC_008435.1 3156688 3157617 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: bja:blr1253 dehydrogenase; short-chain dehydrogenase/reductase SDR 3156688..3157617 Rhodopseudomonas palustris BisA53 4360490 YP_781725.1 CDS glyA NC_008435.1 3157953 3159254 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 3157953..3159254 Rhodopseudomonas palustris BisA53 4360491 YP_781726.1 CDS nrdR NC_008435.1 3159408 3159890 D TIGRFAM: Ribonucleotide reductase regulator NrdR-like; PFAM: ATP-cone domain protein; KEGG: rpc:RPC_2660 protein of unknown function DUF193; transcriptional regulator NrdR 3159408..3159890 Rhodopseudomonas palustris BisA53 4360492 YP_781727.1 CDS RPE_2810 NC_008435.1 3159887 3161038 D KEGG: rpc:RPC_2661 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase-like; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 3159887..3161038 Rhodopseudomonas palustris BisA53 4360493 YP_781728.1 CDS RPE_2811 NC_008435.1 3161038 3161646 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 3161038..3161646 Rhodopseudomonas palustris BisA53 4360494 YP_781729.1 CDS ribH NC_008435.1 3161791 3162282 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 3161791..3162282 Rhodopseudomonas palustris BisA53 4360495 YP_781730.1 CDS nusB NC_008435.1 3162288 3162812 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 3162288..3162812 Rhodopseudomonas palustris BisA53 4360496 YP_781731.1 CDS RPE_2814 NC_008435.1 3163073 3164044 D KEGG: rpd:RPD_2677 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; thiamine-monophosphate kinase 3163073..3164044 Rhodopseudomonas palustris BisA53 4360497 YP_781732.1 CDS hppA NC_008435.1 3164262 3166385 D pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 3164262..3166385 Rhodopseudomonas palustris BisA53 4360498 YP_781733.1 CDS RPE_2816 NC_008435.1 3166483 3166638 D KEGG: rpa:RPA2733 hypothetical protein; hypothetical protein 3166483..3166638 Rhodopseudomonas palustris BisA53 4360499 YP_781734.1 CDS RPE_2817 NC_008435.1 3166727 3167605 D PFAM: alpha/beta hydrolase fold; KEGG: rpd:RPD_2679 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 3166727..3167605 Rhodopseudomonas palustris BisA53 4360500 YP_781735.1 CDS RPE_2818 NC_008435.1 3167763 3170120 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: bja:bll6183 hypothetical protein; TonB-dependent receptor 3167763..3170120 Rhodopseudomonas palustris BisA53 4360501 YP_781736.1 CDS RPE_2819 NC_008435.1 3170138 3171532 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: bja:bll6184 two-component sensor histidine kinase; signal transduction histidine kinase, glucose-6-phosphate specific complement(3170138..3171532) Rhodopseudomonas palustris BisA53 4360502 YP_781737.1 CDS RPE_2820 NC_008435.1 3171695 3172327 D PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: bja:blr6185 two-component response regulator; two component LuxR family transcriptional regulator 3171695..3172327 Rhodopseudomonas palustris BisA53 4360503 YP_781738.1 CDS RPE_2821 NC_008435.1 3172581 3173483 D KEGG: bja:bll3470 hypothetical protein; dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like protein 3172581..3173483 Rhodopseudomonas palustris BisA53 4360504 YP_781739.1 CDS RPE_2822 NC_008435.1 3173517 3174026 R PFAM: SmpA/OmlA domain protein; KEGG: rpc:RPC_2672 SmpA/OmlA; SmpA/OmlA domain-containing protein complement(3173517..3174026) Rhodopseudomonas palustris BisA53 4360505 YP_781740.1 CDS RPE_2823 NC_008435.1 3174110 3174661 D PFAM: Ubiquinol-cytochrome C chaperone; KEGG: rpc:RPC_2673 ubiquinol-cytochrome c chaperone; ubiquinol-cytochrome C chaperone 3174110..3174661 Rhodopseudomonas palustris BisA53 4360506 YP_781741.1 CDS RPE_2824 NC_008435.1 3174685 3175269 D KEGG: rpc:RPC_2674 hypothetical protein; hypothetical protein 3174685..3175269 Rhodopseudomonas palustris BisA53 4360507 YP_781742.1 CDS RPE_2825 NC_008435.1 3175532 3176581 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 3175532..3176581 Rhodopseudomonas palustris BisA53 4360508 YP_781743.1 CDS RPE_2826 NC_008435.1 3176594 3177571 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 3176594..3177571 Rhodopseudomonas palustris BisA53 4360509 YP_781744.1 CDS ihfA NC_008435.1 3177703 3178044 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 3177703..3178044 Rhodopseudomonas palustris BisA53 4360510 YP_781745.1 CDS RPE_2828 NC_008435.1 3178068 3178664 D PFAM: regulatory protein, MerR; KEGG: rpc:RPC_2678 transcriptional regulator, MerR family; MerR family transcriptional regulator 3178068..3178664 Rhodopseudomonas palustris BisA53 4360511 YP_781746.1 CDS RPE_2829 NC_008435.1 3178791 3179597 D PFAM: protein of unknown function DUF1212; KEGG: rpc:RPC_2893 protein of unknown function DUF1212; hypothetical protein 3178791..3179597 Rhodopseudomonas palustris BisA53 4360512 YP_781747.1 CDS RPE_2830 NC_008435.1 3179606 3180076 D KEGG: rpc:RPC_2892 hypothetical protein; hypothetical protein 3179606..3180076 Rhodopseudomonas palustris BisA53 4360513 YP_781748.1 CDS RPE_2831 NC_008435.1 3180162 3180341 R PFAM: antenna complex, alpha/beta subunit; KEGG: rpa:RPA1492 light harvesting protein B-800-850, alpha chain E (antenna pigment protein, alpha chain E) (LH II-E alpha); antenna complex subunit alpha/beta complement(3180162..3180341) Rhodopseudomonas palustris BisA53 4360514 YP_781749.1 CDS RPE_2832 NC_008435.1 3180356 3180496 R PFAM: antenna complex, alpha/beta subunit; KEGG: rpc:RPC_0219 antenna complex, alpha/beta subunit; antenna complex subunit alpha/beta complement(3180356..3180496) Rhodopseudomonas palustris BisA53 4360515 YP_781750.1 CDS RPE_2833 NC_008435.1 3180948 3181376 D KEGG: nha:Nham_4263 hypothetical protein; hypothetical protein 3180948..3181376 Rhodopseudomonas palustris BisA53 4360516 YP_781751.1 CDS RPE_2834 NC_008435.1 3181683 3182057 D hypothetical protein 3181683..3182057 Rhodopseudomonas palustris BisA53 4360518 YP_781752.1 CDS RPE_2835 NC_008435.1 3182260 3182964 D PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: bja:bll2244 probable cAMP-regulatory protein; Crp/FNR family transcriptional regulator 3182260..3182964 Rhodopseudomonas palustris BisA53 4360519 YP_781753.1 CDS RPE_2836 NC_008435.1 3183014 3183205 D hypothetical protein 3183014..3183205 Rhodopseudomonas palustris BisA53 4360520 YP_781754.1 CDS RPE_2837 NC_008435.1 3183221 3184159 R PFAM: ABC-3 protein; KEGG: jan:Jann_2083 ABC-3; ABC-3 protein complement(3183221..3184159) Rhodopseudomonas palustris BisA53 4360521 YP_781755.1 CDS RPE_2838 NC_008435.1 3184156 3185364 R PFAM: transport system permease protein; ABC-3 protein; KEGG: jan:Jann_2082 ABC-3; ABC-3 protein complement(3184156..3185364) Rhodopseudomonas palustris BisA53 4360522 YP_781756.1 CDS RPE_2839 NC_008435.1 3185380 3186210 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sil:SPO3365 zinc/manganese/iron ABC transporter, ATP-binding protein; ABC transporter-like protein complement(3185380..3186210) Rhodopseudomonas palustris BisA53 4360523 YP_781757.1 CDS RPE_2840 NC_008435.1 3186207 3187196 R PFAM: periplasmic solute binding protein; KEGG: sil:SPO3366 zinc/manganese/iron ABC transporter, periplasmic zinc/manganese/iron-binding protein; periplasmic solute binding protein complement(3186207..3187196) Rhodopseudomonas palustris BisA53 4360524 YP_781758.1 CDS RPE_2841 NC_008435.1 3187406 3187720 R KEGG: rpc:RPC_2681 hypothetical protein; hypothetical protein complement(3187406..3187720) Rhodopseudomonas palustris BisA53 4360525 YP_781759.1 CDS RPE_2842 NC_008435.1 3187940 3189526 R PFAM: sugar transferase; KEGG: rpd:RPD_2694 sugar transferase; sugar transferase complement(3187940..3189526) Rhodopseudomonas palustris BisA53 4360526 YP_781760.1 CDS RPE_2843 NC_008435.1 3189575 3190738 R PFAM: glycosyl transferase, group 1; KEGG: rpc:RPC_2683 glycosyl transferase, group 1; group 1 glycosyl transferase complement(3189575..3190738) Rhodopseudomonas palustris BisA53 4360527 YP_781761.1 CDS RPE_2844 NC_008435.1 3190738 3191343 R PFAM: polysaccharide export protein; KEGG: rpc:RPC_4940 polysaccharide export protein; polysaccharide export protein complement(3190738..3191343) Rhodopseudomonas palustris BisA53 4360528 YP_781762.1 CDS RPE_2845 NC_008435.1 3191520 3193874 D PFAM: lipopolysaccharide biosynthesis; KEGG: rpc:RPC_2684 lipopolysaccharide biosynthesis; lipopolysaccharide biosynthesis protein 3191520..3193874 Rhodopseudomonas palustris BisA53 4360529 YP_781763.1 CDS RPE_2846 NC_008435.1 3193875 3195074 R KEGG: rpc:RPC_2685 hypothetical protein; hypothetical protein complement(3193875..3195074) Rhodopseudomonas palustris BisA53 4360530 YP_781764.1 CDS RPE_2847 NC_008435.1 3195200 3196204 D PFAM: polysaccharide deacetylase; KEGG: rpd:RPD_2699 polysaccharide deacetylase; polysaccharide deacetylase 3195200..3196204 Rhodopseudomonas palustris BisA53 4360531 YP_781765.1 CDS RPE_2848 NC_008435.1 3196211 3196420 R KEGG: rpc:RPC_2686 hypothetical protein; hypothetical protein complement(3196211..3196420) Rhodopseudomonas palustris BisA53 4360532 YP_781766.1 CDS RPE_2849 NC_008435.1 3196514 3197602 D PFAM: cytochrome oxidase assembly; KEGG: rpc:RPC_2687 cytochrome oxidase assembly; cytochrome oxidase assembly 3196514..3197602 Rhodopseudomonas palustris BisA53 4360533 YP_781767.1 CDS RPE_2850 NC_008435.1 3197610 3197966 R PFAM: protein of unknown function DUF190; KEGG: rpc:RPC_2688 protein of unknown function DUF190; hypothetical protein complement(3197610..3197966) Rhodopseudomonas palustris BisA53 4360534 YP_781768.1 CDS RPE_2851 NC_008435.1 3197969 3198406 R PFAM: Camphor resistance CrcB protein; KEGG: rpc:RPC_2689 CrcB protein; camphor resistance CrcB protein complement(3197969..3198406) Rhodopseudomonas palustris BisA53 4360535 YP_781769.1 CDS RPE_2852 NC_008435.1 3198403 3198804 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(3198403..3198804) Rhodopseudomonas palustris BisA53 4360536 YP_781770.1 CDS RPE_2853 NC_008435.1 3198827 3200107 R catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase complement(3198827..3200107) Rhodopseudomonas palustris BisA53 4360537 YP_781771.1 CDS RPE_2854 NC_008435.1 3200214 3200798 R PFAM: CoA-binding domain protein; KEGG: rpb:RPB_2668 CoA-binding; CoA-binding domain-containing protein complement(3200214..3200798) Rhodopseudomonas palustris BisA53 4360538 YP_781772.1 CDS RPE_2855 NC_008435.1 3200944 3201768 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(3200944..3201768) Rhodopseudomonas palustris BisA53 4360539 YP_781773.1 CDS RPE_2856 NC_008435.1 3201856 3202287 D TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: rpc:RPC_2695 phenylacetic acid degradation-related protein; hypothetical protein 3201856..3202287 Rhodopseudomonas palustris BisA53 4360540 YP_781774.2 CDS rplM NC_008435.1 3202444 3202908 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 3202444..3202908 Rhodopseudomonas palustris BisA53 4360541 YP_781775.1 CDS rpsI NC_008435.1 3202908 3203384 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 3202908..3203384 Rhodopseudomonas palustris BisA53 4360542 YP_781776.1 CDS RPE_2859 NC_008435.1 3203599 3204855 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_2698 diguanylate cyclase (GGDEF domain); diguanylate cyclase 3203599..3204855 Rhodopseudomonas palustris BisA53 4360543 YP_781777.1 CDS RPE_2860 NC_008435.1 3204948 3205250 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rpc:RPC_2699 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 3204948..3205250 Rhodopseudomonas palustris BisA53 4360544 YP_781778.1 CDS RPE_2861 NC_008435.1 3205247 3206380 R PFAM: protein of unknown function UPF0118; KEGG: rpc:RPC_2700 protein of unknown function UPF0118; hypothetical protein complement(3205247..3206380) Rhodopseudomonas palustris BisA53 4360545 YP_781779.1 CDS RPE_2862 NC_008435.1 3206683 3207615 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: rpc:RPC_2701 rare lipoprotein A; rare lipoprotein A 3206683..3207615 Rhodopseudomonas palustris BisA53 4360546 YP_781780.1 CDS RPE_2863 NC_008435.1 3207636 3208583 R PFAM: alpha/beta hydrolase fold; KEGG: rpd:RPD_2713 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(3207636..3208583) Rhodopseudomonas palustris BisA53 4360547 YP_781781.1 CDS RPE_2864 NC_008435.1 3208739 3209995 D PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: rpc:RPC_2702 serine-type D-Ala-D-Ala carboxypeptidase; Serine-type D-Ala-D-Ala carboxypeptidase 3208739..3209995 Rhodopseudomonas palustris BisA53 4360548 YP_781782.1 CDS RPE_2865 NC_008435.1 3209998 3210687 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 3209998..3210687 Rhodopseudomonas palustris BisA53 4360549 YP_781783.1 CDS RPE_2866 NC_008435.1 3210684 3211730 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 3210684..3211730 Rhodopseudomonas palustris BisA53 4360550 YP_781784.1 CDS RPE_2867 NC_008435.1 3211803 3213359 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 3211803..3213359 Rhodopseudomonas palustris BisA53 4360551 YP_781785.1 CDS RPE_2868 NC_008435.1 3213368 3214156 D TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: rpa:RPA2778 possible deoxyribonuclease; TatD family hydrolase 3213368..3214156 Rhodopseudomonas palustris BisA53 4360552 YP_781786.1 CDS RPE_2869 NC_008435.1 3214153 3214950 D KEGG: rpa:RPA2779 possible hydrolase; putative hydrolase 3214153..3214950 Rhodopseudomonas palustris BisA53 4360553 YP_781787.1 CDS RPE_2870 NC_008435.1 3215099 3215962 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpa:RPA0809 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3215099..3215962) Rhodopseudomonas palustris BisA53 4360554 YP_781788.1 CDS RPE_2871 NC_008435.1 3216145 3217152 D KEGG: sil:SPO2657 ACC deaminase/D-cysteine desulfhydrase family; TIGRFAM: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; D-cysteine desulfhydrase 3216145..3217152 Rhodopseudomonas palustris BisA53 4360555 YP_781789.1 CDS RPE_2872 NC_008435.1 3217166 3218764 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bpm:BURPS1710b_0969 major facilitator family transporter; major facilitator transporter 3217166..3218764 Rhodopseudomonas palustris BisA53 4360556 YP_781790.1 CDS RPE_2873 NC_008435.1 3218825 3219391 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cvi:CV0615 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 3218825..3219391 Rhodopseudomonas palustris BisA53 4360557 YP_781791.1 CDS RPE_2874 NC_008435.1 3219468 3221117 R activates fatty acids by binding to coenzyme A; acyl-CoA synthetase complement(3219468..3221117) Rhodopseudomonas palustris BisA53 4360558 YP_781792.1 CDS RPE_2875 NC_008435.1 3221206 3223092 R PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpb:RPB_2685 TrapT DctQ-M fusion permease, dicarboxylate transport; TRAP C4-dicarboxylate transport system permease DctM complement(3221206..3223092) Rhodopseudomonas palustris BisA53 4360559 YP_781793.1 CDS RPE_2876 NC_008435.1 3223102 3224121 R TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; Twin-arginine translocation pathway signal; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rpb:RPB_2686 TRAP dicarboxylate transporter DctP subunit; TRAP dicarboxylate transporter subunit DctP complement(3223102..3224121) Rhodopseudomonas palustris BisA53 4360560 YP_781794.1 CDS RPE_2877 NC_008435.1 3224660 3225877 R PFAM: sulfatase; KEGG: rpc:RPC_2738 sulfatase; sulfatase complement(3224660..3225877) Rhodopseudomonas palustris BisA53 4360561 YP_781795.1 CDS RPE_2878 NC_008435.1 3225964 3226857 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_2740 transcriptional regulator, LysR family; LysR family transcriptional regulator 3225964..3226857 Rhodopseudomonas palustris BisA53 4360562 YP_781796.1 CDS RPE_2879 NC_008435.1 3227089 3228771 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_2742 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3227089..3228771) Rhodopseudomonas palustris BisA53 4360563 YP_781797.1 CDS RPE_2880 NC_008435.1 3229148 3230881 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_2744 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3229148..3230881) Rhodopseudomonas palustris BisA53 4360564 YP_781798.1 CDS RPE_2881 NC_008435.1 3231107 3233209 D PFAM: UvrD/REP helicase; KEGG: rpc:RPC_2745 UvrD/REP helicase; UvrD/REP helicase 3231107..3233209 Rhodopseudomonas palustris BisA53 4360565 YP_781799.1 CDS RPE_2882 NC_008435.1 3233252 3233512 D KEGG: rpc:RPC_3390 hypothetical protein; hypothetical protein 3233252..3233512 Rhodopseudomonas palustris BisA53 4360566 YP_781800.1 CDS RPE_2883 NC_008435.1 3233537 3233854 R KEGG: rpa:RPA2803 hypothetical protein; hypothetical protein complement(3233537..3233854) Rhodopseudomonas palustris BisA53 4360567 YP_781801.1 CDS RPE_2884 NC_008435.1 3233883 3234611 R TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: rpc:RPC_2751 ExsB; ExsB family transcriptional regulator complement(3233883..3234611) Rhodopseudomonas palustris BisA53 4360568 YP_781802.1 CDS mazG NC_008435.1 3234724 3235548 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 3234724..3235548 Rhodopseudomonas palustris BisA53 4360569 YP_781803.1 CDS RPE_2886 NC_008435.1 3235666 3236988 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: rpb:RPB_2711 hypothetical protein; hypothetical protein 3235666..3236988 Rhodopseudomonas palustris BisA53 4360570 YP_781804.1 CDS RPE_2887 NC_008435.1 3236985 3237350 D KEGG: rpb:RPB_2712 hypothetical protein; hypothetical protein 3236985..3237350 Rhodopseudomonas palustris BisA53 4360571 YP_781805.1 CDS RPE_2888 NC_008435.1 3237439 3237939 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(3237439..3237939) Rhodopseudomonas palustris BisA53 4360572 YP_781806.1 CDS RPE_2889 NC_008435.1 3238392 3239135 D KEGG: rpd:RPD_2756 putative outer membrane protein; putative outer membrane protein 3238392..3239135 Rhodopseudomonas palustris BisA53 4360573 YP_781807.1 CDS uvrA NC_008435.1 3239381 3242446 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 3239381..3242446 Rhodopseudomonas palustris BisA53 4360574 YP_781808.1 CDS RPE_2891 NC_008435.1 3243376 3243672 R hypothetical protein complement(3243376..3243672) Rhodopseudomonas palustris BisA53 4360575 YP_781809.1 CDS RPE_2892 NC_008435.1 3243939 3244154 D KEGG: rpc:RPC_2759 hypothetical protein; hypothetical protein 3243939..3244154 Rhodopseudomonas palustris BisA53 4360576 YP_781810.1 CDS RPE_2893 NC_008435.1 3244269 3244766 D hypothetical protein 3244269..3244766 Rhodopseudomonas palustris BisA53 4360577 YP_781811.1 CDS RPE_2894 NC_008435.1 3245014 3245520 D KEGG: rpd:RPD_2764 hypothetical protein; hypothetical protein 3245014..3245520 Rhodopseudomonas palustris BisA53 4360578 YP_781812.1 CDS RPE_2895 NC_008435.1 3245917 3246669 D KEGG: rpc:RPC_2763 putative outer-membrane protein precursor; putative outer-membrane protein 3245917..3246669 Rhodopseudomonas palustris BisA53 4360579 YP_781813.1 CDS RPE_2896 NC_008435.1 3246839 3247195 D KEGG: rpc:RPC_2764 hypothetical protein; hypothetical protein 3246839..3247195 Rhodopseudomonas palustris BisA53 4360580 YP_781814.1 CDS RPE_2897 NC_008435.1 3248955 3249731 D PFAM: Ion transport protein; Ion transport 2 domain protein,; KEGG: rpc:RPC_2765 ion transport 2; Ion transport 2 domain-containing protein 3248955..3249731 Rhodopseudomonas palustris BisA53 4360581 YP_781815.1 CDS RPE_2898 NC_008435.1 3249802 3249930 R KEGG: rpb:RPB_2721 hypothetical protein; hypothetical protein complement(3249802..3249930) Rhodopseudomonas palustris BisA53 4360582 YP_781816.1 CDS RPE_2899 NC_008435.1 3250324 3250599 D KEGG: bja:bsr4721 hypothetical protein; hypothetical protein 3250324..3250599 Rhodopseudomonas palustris BisA53 4360583 YP_781817.1 CDS RPE_2900 NC_008435.1 3250678 3251073 R KEGG: rpb:RPB_2725 hypothetical protein; hypothetical protein complement(3250678..3251073) Rhodopseudomonas palustris BisA53 4360584 YP_781818.1 CDS RPE_2901 NC_008435.1 3251382 3252296 D KEGG: rpd:RPD_2771 hypothetical protein; hypothetical protein 3251382..3252296 Rhodopseudomonas palustris BisA53 4360585 YP_781819.1 CDS RPE_2902 NC_008435.1 3252716 3252868 D PFAM: protein of unknown function DUF1127; KEGG: rpc:RPC_2771 protein of unknown function DUF1127; hypothetical protein 3252716..3252868 Rhodopseudomonas palustris BisA53 4360586 YP_781820.1 CDS RPE_2903 NC_008435.1 3252978 3254408 D TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 3252978..3254408 Rhodopseudomonas palustris BisA53 4360587 YP_781821.1 CDS RPE_2904 NC_008435.1 3254429 3255292 R KEGG: rpc:RPC_2773 phytoene synthase; phytoene synthase complement(3254429..3255292) Rhodopseudomonas palustris BisA53 4360588 YP_781822.1 CDS RPE_2905 NC_008435.1 3255303 3255689 R PFAM: protein of unknown function DUF498; KEGG: rpc:RPC_2774 protein of unknown function DUF498; hypothetical protein complement(3255303..3255689) Rhodopseudomonas palustris BisA53 4360589 YP_781823.1 CDS secF NC_008435.1 3255689 3256693 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(3255689..3256693) Rhodopseudomonas palustris BisA53 4360590 YP_781824.1 CDS secD NC_008435.1 3256710 3258311 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(3256710..3258311) Rhodopseudomonas palustris BisA53 4360591 YP_781825.1 CDS RPE_2908 NC_008435.1 3258364 3258801 R TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: rpa:RPA2832 putative membrane protein, possible preprotein translocase; preprotein translocase subunit YajC complement(3258364..3258801) Rhodopseudomonas palustris BisA53 4360592 YP_781826.1 CDS RPE_2909 NC_008435.1 3258952 3259944 D PFAM: protein of unknown function DUF815; KEGG: rpc:RPC_2778 protein of unknown function DUF815; hypothetical protein 3258952..3259944 Rhodopseudomonas palustris BisA53 4360593 YP_781827.1 CDS RPE_2910 NC_008435.1 3260099 3261004 R PFAM: pyruvate carboxyltransferase; KEGG: rpc:RPC_2780 pyruvate carboxyltransferase; pyruvate carboxyltransferase complement(3260099..3261004) Rhodopseudomonas palustris BisA53 4360594 YP_781828.1 CDS RPE_2911 NC_008435.1 3261043 3263052 R PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rpc:RPC_2781 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase L chain, ATP-binding protein complement(3261043..3263052) Rhodopseudomonas palustris BisA53 4360595 YP_781829.1 CDS RPE_2912 NC_008435.1 3263052 3264656 R PFAM: carboxyl transferase; KEGG: rpc:RPC_2782 propionyl-CoA carboxylase; propionyl-CoA carboxylase complement(3263052..3264656) Rhodopseudomonas palustris BisA53 4360596 YP_781830.1 CDS RPE_2913 NC_008435.1 3264802 3265137 R PFAM: ETC complex I subunit conserved region; KEGG: rpb:RPB_2935 ETC complex I subunit conserved region; ETC complex I subunit region complement(3264802..3265137) Rhodopseudomonas palustris BisA53 4360597 YP_781831.1 CDS RPE_2914 NC_008435.1 3265317 3266570 D KEGG: rpc:RPC_2784 putative OpgC protein; putative OpgC protein 3265317..3266570 Rhodopseudomonas palustris BisA53 4360598 YP_781832.1 CDS tnaA NC_008435.1 3266685 3268133 R tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase complement(3266685..3268133) Rhodopseudomonas palustris BisA53 4360599 YP_781833.1 CDS RPE_2916 NC_008435.1 3268445 3270181 R KEGG: rpc:RPC_2788 hypothetical protein; hypothetical protein complement(3268445..3270181) Rhodopseudomonas palustris BisA53 4360600 YP_781834.1 CDS RPE_2917 NC_008435.1 3270741 3271193 R PFAM: protein of unknown function DUF192; KEGG: rpc:RPC_2790 protein of unknown function DUF192; hypothetical protein complement(3270741..3271193) Rhodopseudomonas palustris BisA53 4360602 YP_781835.1 CDS RPE_2918 NC_008435.1 3271421 3272080 R PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: rpc:RPC_2791 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein complement(3271421..3272080) Rhodopseudomonas palustris BisA53 4360603 YP_781836.1 CDS RPE_2919 NC_008435.1 3272286 3273047 R PFAM: Silent information regulator protein Sir2; KEGG: rpc:RPC_2792 silent information regulator protein Sir2; silent information regulator protein Sir2 complement(3272286..3273047) Rhodopseudomonas palustris BisA53 4360604 YP_781837.1 CDS RPE_2920 NC_008435.1 3273353 3273802 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rpc:RPC_2794 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3273353..3273802 Rhodopseudomonas palustris BisA53 4360605 YP_781838.1 CDS RPE_2921 NC_008435.1 3274013 3274273 R PFAM: type IV pilus assembly PilZ; KEGG: rpc:RPC_2795 hypothetical protein; hypothetical protein complement(3274013..3274273) Rhodopseudomonas palustris BisA53 4360606 YP_781839.1 CDS RPE_2922 NC_008435.1 3274929 3275198 D hypothetical protein 3274929..3275198 Rhodopseudomonas palustris BisA53 4360608 YP_781840.1 CDS RPE_2923 NC_008435.1 3275434 3275697 R KEGG: rpc:RPC_2801 hypothetical protein; hypothetical protein complement(3275434..3275697) Rhodopseudomonas palustris BisA53 4360609 YP_781841.1 CDS RPE_2924 NC_008435.1 3276041 3276511 D KEGG: rpc:RPC_2802 hypothetical protein; hypothetical protein 3276041..3276511 Rhodopseudomonas palustris BisA53 4360610 YP_781842.1 CDS RPE_2925 NC_008435.1 3276903 3277142 R KEGG: rpb:RPB_4353 hypothetical protein; hypothetical protein complement(3276903..3277142) Rhodopseudomonas palustris BisA53 4360611 YP_781843.1 CDS RPE_2926 NC_008435.1 3277382 3277954 D KEGG: rpc:RPC_2804 hypothetical protein; hypothetical protein 3277382..3277954 Rhodopseudomonas palustris BisA53 4360612 YP_781844.1 CDS RPE_2927 NC_008435.1 3277977 3278234 R KEGG: rpc:RPC_2805 hypothetical protein; hypothetical protein complement(3277977..3278234) Rhodopseudomonas palustris BisA53 4360613 YP_781845.1 CDS RPE_2928 NC_008435.1 3278471 3279556 R TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; KEGG: rpc:RPC_2807 protein of unknown function DUF160; hypothetical protein complement(3278471..3279556) Rhodopseudomonas palustris BisA53 4360614 YP_781846.1 CDS RPE_2929 NC_008435.1 3279553 3280605 R PFAM: tRNA synthetase, class II (D, K and N); KEGG: rpc:RPC_2808 lysine--tRNA ligase; tRNA synthetase complement(3279553..3280605) Rhodopseudomonas palustris BisA53 4360615 YP_781847.1 CDS RPE_2930 NC_008435.1 3280744 3281310 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 3280744..3281310 Rhodopseudomonas palustris BisA53 4360616 YP_781848.1 CDS RPE_2931 NC_008435.1 3281342 3283060 D PFAM: peptidase M23B; KEGG: rpc:RPC_2810 peptidase M23B; peptidase M23B 3281342..3283060 Rhodopseudomonas palustris BisA53 4360617 YP_781849.1 CDS RPE_2932 NC_008435.1 3283119 3284330 D TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rpc:RPC_2811 lytic murein transglycosylase; lytic murein transglycosylase 3283119..3284330 Rhodopseudomonas palustris BisA53 4360618 YP_781850.1 CDS RPE_2933 NC_008435.1 3284337 3285437 D KEGG: rpc:RPC_2812 membrane protein; hypothetical protein 3284337..3285437 Rhodopseudomonas palustris BisA53 4360619 YP_781851.1 CDS RPE_2934 NC_008435.1 3285434 3287275 R TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: rpc:RPC_2813 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ complement(3285434..3287275) Rhodopseudomonas palustris BisA53 4360620 YP_781852.1 CDS RPE_2935 NC_008435.1 3287392 3288120 R TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bja:blr4364 putative haloacid dehalogenase; haloacid dehalogenase complement(3287392..3288120) Rhodopseudomonas palustris BisA53 4360621 YP_781853.1 CDS glpX NC_008435.1 3288155 3289153 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(3288155..3289153) Rhodopseudomonas palustris BisA53 4360622 YP_781854.1 CDS RPE_2937 NC_008435.1 3289214 3290533 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(3289214..3290533) Rhodopseudomonas palustris BisA53 4360623 YP_781855.1 CDS RPE_2938 NC_008435.1 3290635 3291855 R PFAM: aminotransferase, class I and II; KEGG: rpc:RPC_2817 aminotransferase, class I and II; aminotransferase complement(3290635..3291855) Rhodopseudomonas palustris BisA53 4360624 YP_781856.1 CDS RPE_2939 NC_008435.1 3292038 3292451 R KEGG: rpc:RPC_2818 hypothetical protein; hypothetical protein complement(3292038..3292451) Rhodopseudomonas palustris BisA53 4360625 YP_781857.1 CDS RPE_2940 NC_008435.1 3292637 3294439 D TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: rpc:RPC_2819 poly(R)-hydroxyalkanoic acid synthase, class I; Poly(R)-hydroxyalkanoic acid synthase, class I 3292637..3294439 Rhodopseudomonas palustris BisA53 4360626 YP_781858.1 CDS RPE_2941 NC_008435.1 3294719 3297127 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; KEGG: bja:bll5864 hypothetical protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3294719..3297127 Rhodopseudomonas palustris BisA53 4360627 YP_781859.1 CDS RPE_2942 NC_008435.1 3297147 3297509 R KEGG: rpb:RPB_2970 hypothetical protein; hypothetical protein complement(3297147..3297509) Rhodopseudomonas palustris BisA53 4360628 YP_781860.1 CDS RPE_2943 NC_008435.1 3297647 3298255 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rpa:RPA2492 hypothetical protein; type 12 methyltransferase complement(3297647..3298255) Rhodopseudomonas palustris BisA53 4360629 YP_781861.1 CDS RPE_2944 NC_008435.1 3298266 3299261 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase complement(3298266..3299261) Rhodopseudomonas palustris BisA53 4360630 YP_781862.1 CDS RPE_2945 NC_008435.1 3299347 3299877 R KEGG: rpc:RPC_2826 hypothetical protein; hypothetical protein complement(3299347..3299877) Rhodopseudomonas palustris BisA53 4360631 YP_781863.1 CDS RPE_2946 NC_008435.1 3300162 3302219 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 3300162..3302219 Rhodopseudomonas palustris BisA53 4360632 YP_781864.1 CDS RPE_2947 NC_008435.1 3302267 3302857 R PFAM: electron transport protein SCO1/SenC; KEGG: ccr:CC3503 SCO1/2 family protein; electron transport protein SCO1/SenC complement(3302267..3302857) Rhodopseudomonas palustris BisA53 4360633 YP_781865.1 CDS RPE_2948 NC_008435.1 3302950 3303486 R PFAM: protein of unknown function DUF461; KEGG: rpb:RPB_2594 protein of unknown function DUF461; hypothetical protein complement(3302950..3303486) Rhodopseudomonas palustris BisA53 4360634 YP_781866.1 CDS RPE_2949 NC_008435.1 3303486 3304025 R KEGG: bmb:BruAb2_0820 hypothetical membrane antigen; membrane antigen complement(3303486..3304025) Rhodopseudomonas palustris BisA53 4360635 YP_781867.1 CDS RPE_2950 NC_008435.1 3304371 3304535 D KEGG: nha:Nham_2317 DNA topoisomerase IV, B subunit; DNA topoisomerase IV subunit B 3304371..3304535 Rhodopseudomonas palustris BisA53 4360636 YP_781868.1 CDS RPE_2951 NC_008435.1 3304560 3306434 D KEGG: nha:Nham_2318 hypothetical protein; hypothetical protein 3304560..3306434 Rhodopseudomonas palustris BisA53 4360637 YP_781869.1 CDS RPE_2952 NC_008435.1 3306431 3306628 R KEGG: rpc:RPC_2829 plasmid maintenance system antidote protein, XRE family; XRE family plasmid maintenance system antidote protein complement(3306431..3306628) Rhodopseudomonas palustris BisA53 4360638 YP_781870.1 CDS RPE_2953 NC_008435.1 3306755 3307219 D KEGG: rpc:RPC_2832 hypothetical protein; hypothetical protein 3306755..3307219 Rhodopseudomonas palustris BisA53 4360639 YP_781871.1 CDS RPE_2954 NC_008435.1 3307312 3307500 D KEGG: rpc:RPC_2831 hypothetical protein; hypothetical protein 3307312..3307500 Rhodopseudomonas palustris BisA53 4360640 YP_781872.1 CDS RPE_2955 NC_008435.1 3307509 3308960 D KEGG: rru:Rru_A0400 hypothetical protein; hypothetical protein 3307509..3308960 Rhodopseudomonas palustris BisA53 4360641 YP_781873.1 CDS RPE_2956 NC_008435.1 3308984 3310468 R PFAM: peptidase C14, caspase catalytic subunit p20; KEGG: rpa:RPA2480 hypothetical protein; peptidase C14, caspase catalytic subunit p20 complement(3308984..3310468) Rhodopseudomonas palustris BisA53 4360642 YP_781874.1 CDS RPE_2957 NC_008435.1 3310566 3312764 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpa:RPA1816 putative outer membrane receptor for iron transport; TonB-dependent receptor complement(3310566..3312764) Rhodopseudomonas palustris BisA53 4360643 YP_781875.1 CDS RPE_2958 NC_008435.1 3312816 3313199 R KEGG: rpb:RPB_3553 hypothetical protein; hypothetical protein complement(3312816..3313199) Rhodopseudomonas palustris BisA53 4360644 YP_781876.1 CDS RPE_2959 NC_008435.1 3313634 3315187 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: rpc:RPC_2833 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 3313634..3315187 Rhodopseudomonas palustris BisA53 4360645 YP_781877.1 CDS RPE_2960 NC_008435.1 3315326 3316393 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_2834 diguanylate cyclase (GGDEF domain); diguanylate cyclase 3315326..3316393 Rhodopseudomonas palustris BisA53 4360646 YP_781878.1 CDS RPE_2961 NC_008435.1 3316597 3317931 R PFAM: transposase, IS4 family protein; KEGG: sth:STH2086 transposase; transposase, IS4 family protein complement(3316597..3317931) Rhodopseudomonas palustris BisA53 4360647 YP_781879.1 CDS RPE_2962 NC_008435.1 3318197 3318598 R TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: nwi:Nwi_1659 HesB/YadR/YfhF; iron-sulfur cluster assembly accessory protein complement(3318197..3318598) Rhodopseudomonas palustris BisA53 4360648 YP_781880.1 CDS RPE_2963 NC_008435.1 3318668 3319036 R PFAM: protein of unknown function DUF59; KEGG: rpc:RPC_2836 protein of unknown function DUF59; hypothetical protein complement(3318668..3319036) Rhodopseudomonas palustris BisA53 4360649 YP_781881.1 CDS RPE_2964 NC_008435.1 3319033 3320280 R TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rpc:RPC_2837 cysteine desulfurases, SufS subfamily; SufS subfamily cysteine desulfurase complement(3319033..3320280) Rhodopseudomonas palustris BisA53 4360650 YP_781882.1 CDS RPE_2965 NC_008435.1 3320277 3321596 R TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: rpc:RPC_2838 FeS assembly protein SufD; FeS assembly protein SufD complement(3320277..3321596) Rhodopseudomonas palustris BisA53 4360651 YP_781883.1 CDS RPE_2966 NC_008435.1 3321615 3322370 R KEGG: rpc:RPC_2839 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; FeS assembly ATPase SufC complement(3321615..3322370) Rhodopseudomonas palustris BisA53 4360652 YP_781884.1 CDS RPE_2967 NC_008435.1 3322541 3322759 R KEGG: rpb:RPB_2993 hypothetical protein; hypothetical protein complement(3322541..3322759) Rhodopseudomonas palustris BisA53 4360653 YP_781885.1 CDS RPE_2968 NC_008435.1 3322759 3324285 R with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB complement(3322759..3324285) Rhodopseudomonas palustris BisA53 4360654 YP_781886.1 CDS RPE_2969 NC_008435.1 3324360 3325532 R PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rpc:RPC_2842 aminotransferase, class V; class V aminotransferase complement(3324360..3325532) Rhodopseudomonas palustris BisA53 4360655 YP_781887.1 CDS RPE_2970 NC_008435.1 3325795 3326442 D KEGG: rpc:RPC_2843 hypothetical protein; hypothetical protein 3325795..3326442 Rhodopseudomonas palustris BisA53 4360656 YP_781888.1 CDS anmK NC_008435.1 3326464 3327567 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(3326464..3327567) Rhodopseudomonas palustris BisA53 4360657 YP_781889.1 CDS RPE_2972 NC_008435.1 3327736 3328992 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 3327736..3328992 Rhodopseudomonas palustris BisA53 4360658 YP_781890.1 CDS RPE_2973 NC_008435.1 3329134 3332877 R KEGG: rpc:RPC_2847 hypothetical protein; hypothetical protein complement(3329134..3332877) Rhodopseudomonas palustris BisA53 4360659 YP_781891.1 CDS RPE_2974 NC_008435.1 3333074 3333784 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rpb:RPB_3002 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; redoxin domain-containing protein 3333074..3333784 Rhodopseudomonas palustris BisA53 4360660 YP_781892.1 CDS RPE_2975 NC_008435.1 3333884 3335251 D PFAM: peptidase M23B; KEGG: rpc:RPC_2849 peptidase M23B; peptidase M23B 3333884..3335251 Rhodopseudomonas palustris BisA53 4360661 YP_781893.1 CDS RPE_2976 NC_008435.1 3335424 3336392 R TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: rpd:RPD_2445 peptide chain release factor 2; peptide chain release factor 2 complement(3335424..3336392) Rhodopseudomonas palustris BisA53 4360662 YP_781894.1 CDS RPE_2977 NC_008435.1 3336664 3339156 R KEGG: rpc:RPC_2852 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; 1A family penicillin-binding protein complement(3336664..3339156) Rhodopseudomonas palustris BisA53 4360663 YP_781895.1 CDS RPE_2978 NC_008435.1 3339327 3340613 R PFAM: cell wall hydrolase/autolysin; KEGG: rpc:RPC_2853 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase complement(3339327..3340613) Rhodopseudomonas palustris BisA53 4360664 YP_781896.1 CDS RPE_2979 NC_008435.1 3341294 3344344 D TIGRFAM: ribonuclease, Rne/Rng family; KEGG: rpc:RPC_2854 ribonuclease, Rne/Rng family; ribonuclease 3341294..3344344 Rhodopseudomonas palustris BisA53 4360665 YP_781897.1 CDS RPE_2980 NC_008435.1 3344451 3345653 R PFAM: aminotransferase, class I and II; Allinase-like; KEGG: rpc:RPC_2860 aminotransferase, class I and II; class I and II aminotransferase complement(3344451..3345653) Rhodopseudomonas palustris BisA53 4360666 YP_781898.1 CDS RPE_2981 NC_008435.1 3345765 3347177 D PFAM: peptidase M48, Ste24p; KEGG: rpc:RPC_2861 peptidase M48, Ste24p; peptidase M48, Ste24p 3345765..3347177 Rhodopseudomonas palustris BisA53 4360667 YP_781899.1 CDS RPE_2982 NC_008435.1 3347190 3347981 R PFAM: alpha/beta hydrolase fold; KEGG: atc:AGR_C_2897 hypothetical protein; alpha/beta hydrolase fold protein complement(3347190..3347981) Rhodopseudomonas palustris BisA53 4360668 YP_781900.1 CDS RPE_2983 NC_008435.1 3348240 3349007 D PFAM: DSBA oxidoreductase; KEGG: rpc:RPC_2862 DsbA oxidoreductase; DSBA oxidoreductase 3348240..3349007 Rhodopseudomonas palustris BisA53 4360669 YP_781901.1 CDS RPE_2984 NC_008435.1 3349139 3349396 D hypothetical protein 3349139..3349396 Rhodopseudomonas palustris BisA53 4360670 YP_781902.1 CDS RPE_2985 NC_008435.1 3349611 3350297 D PFAM: protein of unknown function DUF1236; KEGG: rpc:RPC_2866 protein of unknown function DUF1236; hypothetical protein 3349611..3350297 Rhodopseudomonas palustris BisA53 4360671 YP_781903.1 CDS RPE_2986 NC_008435.1 3350741 3351196 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 3350741..3351196 Rhodopseudomonas palustris BisA53 4360672 YP_781904.1 CDS RPE_2987 NC_008435.1 3351232 3351714 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: rpc:RPC_2868 acetyl-CoA carboxylase, biotin carboxyl carrier protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein 3351232..3351714 Rhodopseudomonas palustris BisA53 4360673 YP_781905.1 CDS RPE_2988 NC_008435.1 3351837 3353192 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 3351837..3353192 Rhodopseudomonas palustris BisA53 4360674 YP_781906.1 CDS RPE_2989 NC_008435.1 3353314 3354843 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE3 domain protein; KEGG: rpc:RPC_2870 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 3353314..3354843 Rhodopseudomonas palustris BisA53 4360675 YP_781907.1 CDS RPE_2990 NC_008435.1 3354840 3355280 D PFAM: response regulator receiver; KEGG: rpc:RPC_2871 response regulator receiver domain protein (CheY-like); response regulator receiver protein 3354840..3355280 Rhodopseudomonas palustris BisA53 4360676 YP_781908.1 CDS RPE_2991 NC_008435.1 3355277 3356383 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation/phosphoacceptor; KEGG: rpc:RPC_2872 signal transduction histidine kinase; signal transduction histidine kinase 3355277..3356383 Rhodopseudomonas palustris BisA53 4360677 YP_781909.1 CDS RPE_2992 NC_008435.1 3356417 3357190 D KEGG: rpd:RPD_2427 hypothetical protein; hypothetical protein 3356417..3357190 Rhodopseudomonas palustris BisA53 4360678 YP_781910.1 CDS RPE_2993 NC_008435.1 3357171 3358991 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rpc:RPC_2874 radical SAM; radical SAM domain-containing protein complement(3357171..3358991) Rhodopseudomonas palustris BisA53 4360679 YP_781911.1 CDS aat NC_008435.1 3359139 3359828 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 3359139..3359828 Rhodopseudomonas palustris BisA53 4360680 YP_781912.1 CDS RPE_2995 NC_008435.1 3359842 3360768 R KEGG: rpc:RPC_2883 hypothetical protein; hypothetical protein complement(3359842..3360768) Rhodopseudomonas palustris BisA53 4360681 YP_781913.1 CDS RPE_2996 NC_008435.1 3360990 3361937 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: rpd:RPD_2420 alpha/beta hydrolase fold-3; alpha/beta hydrolase domain-containing protein 3360990..3361937 Rhodopseudomonas palustris BisA53 4360682 YP_781914.1 CDS RPE_2997 NC_008435.1 3362110 3362382 R KEGG: rpc:RPC_2927 hypothetical protein; hypothetical protein complement(3362110..3362382) Rhodopseudomonas palustris BisA53 4360683 YP_781915.1 CDS RPE_2998 NC_008435.1 3362554 3363213 R KEGG: bja:blr4700 putative outer-membrane immunogenic protein precursor; putative outer-membrane immunogenic protein complement(3362554..3363213) Rhodopseudomonas palustris BisA53 4360684 YP_781916.1 CDS RPE_2999 NC_008435.1 3363499 3364107 D PFAM: protein of unknown function DUF1211; KEGG: mhu:Mhun_0814 protein of unknown function DUF1211; hypothetical protein 3363499..3364107 Rhodopseudomonas palustris BisA53 4360685 YP_781917.1 CDS RPE_3000 NC_008435.1 3364132 3366468 R PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: rpb:RPB_3153 adenylate/guanylate cyclase; adenylate/guanylate cyclase complement(3364132..3366468) Rhodopseudomonas palustris BisA53 4360686 YP_781918.1 CDS RPE_3001 NC_008435.1 3366766 3367194 D KEGG: rpb:RPB_3154 hypothetical protein; hypothetical protein 3366766..3367194 Rhodopseudomonas palustris BisA53 4360687 YP_781919.1 CDS RPE_3002 NC_008435.1 3367201 3368898 R KEGG: rpb:RPB_3155 hypothetical protein; hypothetical protein complement(3367201..3368898) Rhodopseudomonas palustris BisA53 4360688 YP_781920.1 CDS RPE_3003 NC_008435.1 3368910 3370274 R KEGG: rpb:RPB_3156 hypothetical protein; hypothetical protein complement(3368910..3370274) Rhodopseudomonas palustris BisA53 4360689 YP_781921.1 CDS RPE_3004 NC_008435.1 3370575 3371393 R KEGG: rpc:RPC_2938 hypothetical protein; hypothetical protein complement(3370575..3371393) Rhodopseudomonas palustris BisA53 4360690 YP_781922.1 CDS RPE_3005 NC_008435.1 3371684 3371902 R KEGG: rpd:RPD_2665 hypothetical protein; hypothetical protein complement(3371684..3371902) Rhodopseudomonas palustris BisA53 4360691 YP_781923.1 CDS RPE_3006 NC_008435.1 3371899 3372138 R KEGG: rpc:RPC_2654 hypothetical protein; hypothetical protein complement(3371899..3372138) Rhodopseudomonas palustris BisA53 4360692 YP_781924.1 CDS RPE_3007 NC_008435.1 3372370 3372885 R PFAM: regulatory protein, MarR; KEGG: rpb:RPB_2626 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(3372370..3372885) Rhodopseudomonas palustris BisA53 4360693 YP_781925.1 CDS RPE_3008 NC_008435.1 3373380 3373922 D KEGG: bja:blr5037 delta_aminolevulinic acid dehydratase; delta-aminolevulinic acid dehydratase 3373380..3373922 Rhodopseudomonas palustris BisA53 4360694 YP_781926.1 CDS RPE_3009 NC_008435.1 3374091 3375149 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 3374091..3375149 Rhodopseudomonas palustris BisA53 4360695 YP_781927.1 CDS RPE_3010 NC_008435.1 3375405 3375947 D PFAM: RDD domain containing protein; KEGG: rpc:RPC_2650 RDD; RDD domain-containing protein 3375405..3375947 Rhodopseudomonas palustris BisA53 4360696 YP_781928.1 CDS RPE_3011 NC_008435.1 3376019 3376795 D Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 3376019..3376795 Rhodopseudomonas palustris BisA53 4360697 YP_781929.1 CDS RPE_3012 NC_008435.1 3376878 3377180 R PFAM: Transglycosylase-associated protein; KEGG: mlo:msr2497 hypothetical protein; transglycosylase-associated protein complement(3376878..3377180) Rhodopseudomonas palustris BisA53 4360698 YP_781930.1 CDS RPE_3013 NC_008435.1 3377382 3378059 R PFAM: SOUL heme-binding protein; KEGG: ccr:CC2549 hypothetical protein; SOUL heme-binding protein complement(3377382..3378059) Rhodopseudomonas palustris BisA53 4360699 YP_781931.1 CDS RPE_3014 NC_008435.1 3378196 3379395 R PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation/phosphoacceptor; KEGG: bja:bll6988 hypothetical protein; signal transduction histidine kinase complement(3378196..3379395) Rhodopseudomonas palustris BisA53 4360700 YP_781932.1 CDS RPE_3015 NC_008435.1 3379550 3380926 R TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: rpc:RPC_2648 NRAMP family Mn2+/Fe2+ transporters; manganese transport protein MntH complement(3379550..3380926) Rhodopseudomonas palustris BisA53 4360701 YP_781933.1 CDS RPE_3016 NC_008435.1 3381177 3381356 D KEGG: rpa:RPA2705 hypothetical protein; hypothetical protein 3381177..3381356 Rhodopseudomonas palustris BisA53 4360702 YP_781934.1 CDS RPE_3017 NC_008435.1 3381552 3383813 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(3381552..3383813) Rhodopseudomonas palustris BisA53 4360703 YP_781935.1 CDS recO NC_008435.1 3383858 3384634 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(3383858..3384634) Rhodopseudomonas palustris BisA53 4360704 YP_781936.1 CDS RPE_3019 NC_008435.1 3384909 3386600 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpd:RPD_0337 chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3384909..3386600 Rhodopseudomonas palustris BisA53 4360705 YP_781937.1 CDS RPE_3020 NC_008435.1 3386726 3387106 R KEGG: rpc:RPC_2642 hypothetical protein; hypothetical protein complement(3386726..3387106) Rhodopseudomonas palustris BisA53 4360706 YP_781938.1 CDS era NC_008435.1 3387109 3388050 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(3387109..3388050) Rhodopseudomonas palustris BisA53 4360707 YP_781939.1 CDS RPE_3022 NC_008435.1 3388043 3388849 R PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: rpc:RPC_2640 ribonuclease III; ribonuclease III complement(3388043..3388849) Rhodopseudomonas palustris BisA53 4360708 YP_781940.1 CDS RPE_3023 NC_008435.1 3388846 3389604 R KEGG: rpb:RPB_2611 peptidase S26A, signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; peptidase S26A, signal peptidase I complement(3388846..3389604) Rhodopseudomonas palustris BisA53 4360709 YP_781941.1 CDS acpS NC_008435.1 3389861 3390280 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(3389861..3390280) Rhodopseudomonas palustris BisA53 4360710 YP_781942.1 CDS RPE_3025 NC_008435.1 3390277 3391044 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(3390277..3391044) Rhodopseudomonas palustris BisA53 4360711 YP_781943.1 CDS RPE_3026 NC_008435.1 3391078 3393357 R KEGG: rpc:RPC_2635 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; (p)ppGpp synthetase I SpoT/RelA complement(3391078..3393357) Rhodopseudomonas palustris BisA53 4360712 YP_781944.1 CDS RPE_3027 NC_008435.1 3393782 3394174 R Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(3393782..3394174) Rhodopseudomonas palustris BisA53 4360713 YP_781945.1 CDS RPE_3028 NC_008435.1 3394534 3395163 D PFAM: protein of unknown function DUF88; KEGG: rpc:RPC_2633 protein of unknown function DUF88; hypothetical protein 3394534..3395163 Rhodopseudomonas palustris BisA53 4360714 YP_781946.1 CDS RPE_3029 NC_008435.1 3395201 3395878 D PFAM: Uracil-DNA glycosylase superfamily; KEGG: rpa:RPA2690 possible uracil-DNA glycosylase; uracil-DNA glycosylase superfamily protein 3395201..3395878 Rhodopseudomonas palustris BisA53 4360715 YP_781947.1 CDS smpB NC_008435.1 3396010 3396483 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(3396010..3396483) Rhodopseudomonas palustris BisA53 4360716 YP_781948.1 CDS RPE_3031 NC_008435.1 3396550 3396963 R TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: bja:bll5071 mechanosensitive channel homolog; large conductance mechanosensitive channel protein complement(3396550..3396963) Rhodopseudomonas palustris BisA53 4360717 YP_781949.1 CDS RPE_3032 NC_008435.1 3397013 3397903 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(3397013..3397903) Rhodopseudomonas palustris BisA53 4360718 YP_781950.1 CDS RPE_3033 NC_008435.1 3398187 3398648 D PFAM: protein of unknown function UPF0074; KEGG: rpc:RPC_2628 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 3398187..3398648 Rhodopseudomonas palustris BisA53 4360719 YP_781951.1 CDS RPE_3034 NC_008435.1 3398662 3399453 D PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_2627 UbiE/COQ5 methyltransferase; type 11 methyltransferase 3398662..3399453 Rhodopseudomonas palustris BisA53 4360720 YP_781952.1 CDS RPE_3035 NC_008435.1 3399509 3399916 R PFAM: Cupin 2, conserved barrel domain protein; KEGG: rpc:RPC_2626 cupin 2, conserved barrel; cupin complement(3399509..3399916) Rhodopseudomonas palustris BisA53 4360721 YP_781953.1 CDS RPE_3036 NC_008435.1 3399980 3400720 R PFAM: Dimethylmenaquinone methyltransferase; KEGG: rpc:RPC_2625 dimethylmenaquinone methyltransferase; hypothetical protein complement(3399980..3400720) Rhodopseudomonas palustris BisA53 4360722 YP_781954.1 CDS RPE_3037 NC_008435.1 3400924 3401658 D TIGRFAM: conserved hypothetical protein; PFAM: Allophanate hydrolase subunit 1; KEGG: rpc:RPC_2624 hypothetical protein; hypothetical protein 3400924..3401658 Rhodopseudomonas palustris BisA53 4360723 YP_781955.1 CDS RPE_3038 NC_008435.1 3401655 3402659 D TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: rpc:RPC_2623 allophanate hydrolase subunit 2; allophanate hydrolase subunit 2 3401655..3402659 Rhodopseudomonas palustris BisA53 4360724 YP_781956.1 CDS RPE_3039 NC_008435.1 3402802 3403569 D PFAM: LamB/YcsF family protein; KEGG: rpa:RPA2681 possible lactam utilization protein; LamB/YcsF family protein 3402802..3403569 Rhodopseudomonas palustris BisA53 4360725 YP_781957.1 CDS rimO NC_008435.1 3404141 3405466 D catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase 3404141..3405466 Rhodopseudomonas palustris BisA53 4360726 YP_781958.1 CDS RPE_3041 NC_008435.1 3405572 3406459 R PFAM: protein of unknown function DUF344; KEGG: ana:alr2191 hypothetical protein; hypothetical protein complement(3405572..3406459) Rhodopseudomonas palustris BisA53 4360727 YP_781959.1 CDS RPE_3042 NC_008435.1 3406932 3407888 D PFAM: transposase, IS4 family protein; KEGG: atc:AGR_L_863gl hypothetical protein; transposase, IS4 family protein 3406932..3407888 Rhodopseudomonas palustris BisA53 4360728 YP_781960.1 CDS RPE_3043 NC_008435.1 3408183 3408491 R hypothetical protein complement(3408183..3408491) Rhodopseudomonas palustris BisA53 4360729 YP_781961.1 CDS RPE_3044 NC_008435.1 3408683 3409450 R KEGG: bja:bll1305 hypothetical protein; hypothetical protein complement(3408683..3409450) Rhodopseudomonas palustris BisA53 4360730 YP_781962.1 CDS RPE_3045 NC_008435.1 3409883 3411505 R TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: rpc:RPC_2944 peptide chain release factor 3; peptide chain release factor 3 complement(3409883..3411505) Rhodopseudomonas palustris BisA53 4360731 YP_781963.1 CDS RPE_3046 NC_008435.1 3411724 3412038 D PFAM: small multidrug resistance protein; KEGG: rpc:RPC_2945 small multidrug resistance protein; small multidrug resistance protein 3411724..3412038 Rhodopseudomonas palustris BisA53 4360732 YP_781964.1 CDS RPE_3047 NC_008435.1 3412098 3413102 R PFAM: phosphate transporter; KEGG: rpd:RPD_2335 phosphate transporter; phosphate transporter complement(3412098..3413102) Rhodopseudomonas palustris BisA53 4360733 YP_781965.1 CDS RPE_3048 NC_008435.1 3413117 3413773 R PFAM: protein of unknown function DUF47; KEGG: rpc:RPC_2947 protein of unknown function DUF47; hypothetical protein complement(3413117..3413773) Rhodopseudomonas palustris BisA53 4360734 YP_781966.1 CDS RPE_3049 NC_008435.1 3414357 3416231 D KEGG: rpc:RPC_2948 hypothetical protein; hypothetical protein 3414357..3416231 Rhodopseudomonas palustris BisA53 4360735 YP_781967.1 CDS RPE_3050 NC_008435.1 3416818 3417267 R KEGG: rpc:RPC_2950 hypothetical protein; hypothetical protein complement(3416818..3417267) Rhodopseudomonas palustris BisA53 4360736 YP_781968.1 CDS RPE_3051 NC_008435.1 3417555 3418523 R PFAM: inner-membrane translocator; KEGG: rpd:RPD_2332 inner-membrane translocator; inner-membrane translocator complement(3417555..3418523) Rhodopseudomonas palustris BisA53 4360737 YP_781969.1 CDS RPE_3052 NC_008435.1 3418525 3419400 R PFAM: inner-membrane translocator; KEGG: rpc:RPC_2952 inner-membrane translocator; inner-membrane translocator complement(3418525..3419400) Rhodopseudomonas palustris BisA53 4360738 YP_781970.1 CDS RPE_3053 NC_008435.1 3419482 3420702 R KEGG: bja:blr4039 ABC transporter substrate-binding protein; ABC transporter substrate-binding protein complement(3419482..3420702) Rhodopseudomonas palustris BisA53 4360739 YP_781971.1 CDS RPE_3054 NC_008435.1 3420739 3421518 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_2954 ABC transporter related; ABC transporter-like protein complement(3420739..3421518) Rhodopseudomonas palustris BisA53 4360740 YP_781972.1 CDS RPE_3055 NC_008435.1 3421511 3422266 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA2275 putative branched-chain amino acid transport system ATP-binding protein; ABC transporter-like protein complement(3421511..3422266) Rhodopseudomonas palustris BisA53 4360741 YP_781973.1 CDS RPE_3056 NC_008435.1 3422596 3423084 D hypothetical protein 3422596..3423084 Rhodopseudomonas palustris BisA53 4360742 YP_781974.1 CDS RPE_3057 NC_008435.1 3423201 3424712 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 3423201..3424712 Rhodopseudomonas palustris BisA53 4360743 YP_781975.1 CDS RPE_3058 NC_008435.1 3424678 3425025 R TIGRFAM: conserved hypothetical protein; PFAM: arsenate reductase and related; KEGG: rpa:RPA2272 hypothetical protein; hypothetical protein complement(3424678..3425025) Rhodopseudomonas palustris BisA53 4360744 YP_781976.1 CDS RPE_3059 NC_008435.1 3425333 3426331 R hypothetical protein complement(3425333..3426331) Rhodopseudomonas palustris BisA53 4360745 YP_781977.1 CDS RPE_3060 NC_008435.1 3426423 3427097 R PFAM: PspA/IM30 family protein; KEGG: ret:RHE_CH03136 hypothetical protein; phage shock protein A, PspA complement(3426423..3427097) Rhodopseudomonas palustris BisA53 4360746 YP_781978.1 CDS RPE_3061 NC_008435.1 3427240 3427824 D PFAM: LemA family protein; KEGG: bja:bll2494 lemA protein; LemA family protein 3427240..3427824 Rhodopseudomonas palustris BisA53 4360747 YP_781979.1 CDS RPE_3062 NC_008435.1 3427849 3429822 D PFAM: peptidase M48, Ste24p; KEGG: rpa:RPA4495 possible protease htpX homolog; peptidase M48, Ste24p 3427849..3429822 Rhodopseudomonas palustris BisA53 4360748 YP_781980.1 CDS RPE_3063 NC_008435.1 3430040 3431842 D KEGG: rpa:RPA2269 putative flavoprotein involved in K+ transport; putative potassium transport flavoprotein 3430040..3431842 Rhodopseudomonas palustris BisA53 4360749 YP_781981.1 CDS RPE_3064 NC_008435.1 3431909 3432415 R PFAM: Hemerythrin HHE cation binding domain protein; KEGG: rpa:RPA2070 hypothetical protein; hemerythrin HHE cation binding domain-containing protein complement(3431909..3432415) Rhodopseudomonas palustris BisA53 4360750 YP_781982.1 CDS RPE_3065 NC_008435.1 3432555 3433565 R KEGG: rpa:RPA2069 hypothetical protein; hypothetical protein complement(3432555..3433565) Rhodopseudomonas palustris BisA53 4360751 YP_781983.1 CDS RPE_3066 NC_008435.1 3433562 3433852 R KEGG: rpa:RPA2068 hypothetical protein; hypothetical protein complement(3433562..3433852) Rhodopseudomonas palustris BisA53 4360752 YP_781984.1 CDS RPE_3067 NC_008435.1 3434189 3435490 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpa:RPA4459 putative flavocytochrome c sulfide dehydrogenase, flavoprotein subunit; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(3434189..3435490) Rhodopseudomonas palustris BisA53 4360753 YP_781985.1 CDS RPE_3068 NC_008435.1 3435520 3436779 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpd:RPD_4248 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(3435520..3436779) Rhodopseudomonas palustris BisA53 4360754 YP_781986.1 CDS RPE_3069 NC_008435.1 3436799 3437170 R KEGG: rpb:RPB_4365 cytochrome subunit of sulfide dehydrogenase; hypothetical protein complement(3436799..3437170) Rhodopseudomonas palustris BisA53 4360755 YP_781987.1 CDS RPE_3070 NC_008435.1 3437331 3438413 R PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: rpd:RPD_4250 protein of unknown function DUF395, YeeE/YedE; hypothetical protein complement(3437331..3438413) Rhodopseudomonas palustris BisA53 4360756 YP_781988.1 CDS RPE_3071 NC_008435.1 3438579 3439298 R PFAM: cytochrome c, class I; KEGG: rpa:RPA4463 possible cytochrome; cytochrome c, class I complement(3438579..3439298) Rhodopseudomonas palustris BisA53 4360757 YP_781989.1 CDS RPE_3072 NC_008435.1 3439282 3440562 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: rpd:RPD_4252 twin-arginine translocation pathway signal; molybdopterin binding oxidoreductase complement(3439282..3440562) Rhodopseudomonas palustris BisA53 4360758 YP_781990.1 CDS RPE_3073 NC_008435.1 3440638 3442335 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: 5'-Nucleotidase domain protein; KEGG: rpb:RPB_4369 twin-arginine translocation pathway signal; 5'-nucleotidase domain-containing protein complement(3440638..3442335) Rhodopseudomonas palustris BisA53 4360759 YP_781991.1 CDS RPE_3074 NC_008435.1 3442419 3442751 R KEGG: rpd:RPD_4254 putative sulfur oxidation protein SoxZ; putative sulfur oxidation protein SoxZ complement(3442419..3442751) Rhodopseudomonas palustris BisA53 4360760 YP_781992.1 CDS RPE_3075 NC_008435.1 3442799 3443263 R with SoxZ catalyzes the oxidation of sulfur compounds; sulfur oxidation protein SoxY complement(3442799..3443263) Rhodopseudomonas palustris BisA53 4360761 YP_781993.1 CDS RPE_3076 NC_008435.1 3443432 3444253 D KEGG: rpd:RPD_4256 hypothetical protein; hypothetical protein 3443432..3444253 Rhodopseudomonas palustris BisA53 4360762 YP_781994.1 CDS RPE_3077 NC_008435.1 3444265 3444924 D KEGG: rpd:RPD_4257 hypothetical protein; hypothetical protein 3444265..3444924 Rhodopseudomonas palustris BisA53 4360763 YP_781995.1 CDS RPE_3078 NC_008435.1 3445035 3445532 D PFAM: protein of unknown function DUF336; KEGG: rpd:RPD_4258 protein of unknown function DUF336; hypothetical protein 3445035..3445532 Rhodopseudomonas palustris BisA53 4360764 YP_781996.1 CDS RPE_3079 NC_008435.1 3445558 3446139 R TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpb:RPB_4375 twin-arginine translocation pathway signal; thioredoxin-like protein complement(3445558..3446139) Rhodopseudomonas palustris BisA53 4360765 YP_781997.1 CDS RPE_3080 NC_008435.1 3446167 3446910 R PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: rpd:RPD_4260 cytochrome c biogenesis protein, transmembrane region; cytochrome c biogenesis protein, transmembrane region complement(3446167..3446910) Rhodopseudomonas palustris BisA53 4360766 YP_781998.1 CDS RPE_3081 NC_008435.1 3446951 3447355 D KEGG: rpd:RPD_4261 hypothetical protein; hypothetical protein 3446951..3447355 Rhodopseudomonas palustris BisA53 4360767 YP_781999.1 CDS RPE_3082 NC_008435.1 3447370 3447747 D PFAM: regulatory protein, ArsR; KEGG: rpd:RPD_4262 regulatory protein, ArsR; ArsR family transcriptional regulator 3447370..3447747 Rhodopseudomonas palustris BisA53 4360768 YP_782000.1 CDS RPE_3083 NC_008435.1 3447816 3448922 D PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: rpb:RPB_4379 protein of unknown function DUF395, YeeE/YedE; hypothetical protein 3447816..3448922 Rhodopseudomonas palustris BisA53 4360769 YP_782001.1 CDS RPE_3084 NC_008435.1 3448978 3450495 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rpb:RPB_4311 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 3448978..3450495 Rhodopseudomonas palustris BisA53 4360770 YP_782002.1 CDS RPE_3085 NC_008435.1 3450607 3451596 R PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: bbr:BB4314 putative inner membrane transport protein; C4-dicarboxylate transporter/malic acid transport protein complement(3450607..3451596) Rhodopseudomonas palustris BisA53 4360771 YP_782003.1 CDS RPE_3086 NC_008435.1 3451974 3452414 D PFAM: cytochrome c, class II; KEGG: rpa:RPA2314 cytochrome c556; cytochrome c, class II 3451974..3452414 Rhodopseudomonas palustris BisA53 4360772 YP_782004.1 CDS RPE_3087 NC_008435.1 3452418 3453092 D PFAM: cytochrome B561; KEGG: rpa:RPA2315 putative nickel-dependent hydrogenase, b-type cytochrome subunit; cytochrome B561 3452418..3453092 Rhodopseudomonas palustris BisA53 4360773 YP_782005.1 CDS RPE_3088 NC_008435.1 3453110 3453397 D hypothetical protein 3453110..3453397 Rhodopseudomonas palustris BisA53 4360774 YP_782006.1 CDS RPE_3089 NC_008435.1 3453418 3453753 R KEGG: rpb:RPB_3172 hypothetical protein; hypothetical protein complement(3453418..3453753) Rhodopseudomonas palustris BisA53 4360775 YP_782007.1 CDS RPE_3090 NC_008435.1 3453807 3454307 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA complement(3453807..3454307) Rhodopseudomonas palustris BisA53 4360776 YP_782008.1 CDS RPE_3091 NC_008435.1 3454609 3455094 D PFAM: Ferritin, Dps family protein; KEGG: rpa:RPA2755 possible DNA-binding stress protein; Ferritin, Dps family protein 3454609..3455094 Rhodopseudomonas palustris BisA53 4360777 YP_782009.1 CDS RPE_3092 NC_008435.1 3455343 3455603 D KEGG: rpd:RPD_3790 hypothetical protein; hypothetical protein 3455343..3455603 Rhodopseudomonas palustris BisA53 4360778 YP_782010.1 CDS RPE_3093 NC_008435.1 3455674 3456558 R KEGG: rpc:RPC_0426 hypothetical protein; hypothetical protein complement(3455674..3456558) Rhodopseudomonas palustris BisA53 4360779 YP_782011.1 CDS RPE_3094 NC_008435.1 3456747 3458993 D PFAM: FMN-binding domain protein; KEGG: rpb:RPB_3141 FMN-binding; FMN-binding domain-containing protein 3456747..3458993 Rhodopseudomonas palustris BisA53 4360780 YP_782012.1 CDS RPE_3095 NC_008435.1 3459011 3460957 D reduces nitrous oxide to nitrogen; nitrous-oxide reductase 3459011..3460957 Rhodopseudomonas palustris BisA53 4360781 YP_782013.1 CDS RPE_3096 NC_008435.1 3460957 3462327 D PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: rpb:RPB_3143 periplasmic copper-binding; periplasmic copper-binding protein 3460957..3462327 Rhodopseudomonas palustris BisA53 4360782 YP_782014.1 CDS RPE_3097 NC_008435.1 3462324 3463229 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_3144 ABC transporter related; ABC transporter-like protein 3462324..3463229 Rhodopseudomonas palustris BisA53 4360783 YP_782015.1 CDS RPE_3098 NC_008435.1 3463226 3464053 D KEGG: rpb:RPB_3145 nitrous oxide metabolic protein; nitrous oxide metabolic protein 3463226..3464053 Rhodopseudomonas palustris BisA53 4360784 YP_782016.1 CDS RPE_3099 NC_008435.1 3464050 3464598 D PFAM: NosL family protein; KEGG: rpc:RPC_0432 NosL; NosL family protein 3464050..3464598 Rhodopseudomonas palustris BisA53 4360785 YP_782017.1 CDS RPE_3100 NC_008435.1 3464612 3465607 D PFAM: ApbE family lipoprotein; KEGG: rpb:RPB_3147 twin-arginine translocation pathway signal; ApbE family lipoprotein 3464612..3465607 Rhodopseudomonas palustris BisA53 4360786 YP_782018.1 CDS RPE_3101 NC_008435.1 3466070 3468352 D KEGG: rpc:RPC_2980 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; formate acetyltransferase 3466070..3468352 Rhodopseudomonas palustris BisA53 4360787 YP_782019.1 CDS RPE_3102 NC_008435.1 3468339 3469148 D TIGRFAM: pyruvate formate-lyase activating enzyme; PFAM: Radical SAM domain protein; KEGG: rpc:RPC_1081 pyruvate formate-lyase activating; pyruvate formate-lyase activating enzyme 3468339..3469148 Rhodopseudomonas palustris BisA53 4360788 YP_782020.1 CDS RPE_3103 NC_008435.1 3469216 3469791 R TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; KEGG: bja:blr1228 guanylate kinase; phosphonate metabolism 1,5-bisphosphokinase PhnN complement(3469216..3469791) Rhodopseudomonas palustris BisA53 4360789 YP_782021.1 CDS RPE_3104 NC_008435.1 3469788 3470945 R TIGRFAM: phosphonate metabolism protein PhnM; PFAM: Amidohydrolase 3; KEGG: rpb:RPB_4095 phosphonate metabolism PhnM; phosphonate metabolism protein PhnM complement(3469788..3470945) Rhodopseudomonas palustris BisA53 4360790 YP_782022.1 CDS RPE_3105 NC_008435.1 3470976 3471686 R KEGG: rpb:RPB_4094 phosphonate C-P lyase system, PhnL; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate C-P lyase system, PhnL complement(3470976..3471686) Rhodopseudomonas palustris BisA53 4360791 YP_782023.1 CDS phnK NC_008435.1 3471683 3472483 R KEGG: rpd:RPD_3829 phosphonate C-P lyase system, PhnK; TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate C-P lyase system protein PhnK complement(3471683..3472483) Rhodopseudomonas palustris BisA53 4360792 YP_782024.1 CDS RPE_3107 NC_008435.1 3472476 3473357 R PFAM: phosphonate metabolism PhnJ; KEGG: rpb:RPB_4092 phosphonate metabolism PhnJ; phosphonate metabolism PhnJ complement(3472476..3473357) Rhodopseudomonas palustris BisA53 4360793 YP_782025.1 CDS RPE_3108 NC_008435.1 3473354 3474460 R PFAM: phosphonate metabolism; KEGG: rpd:RPD_3827 phosphonate metabolism; phosphonate metabolism protein complement(3473354..3474460) Rhodopseudomonas palustris BisA53 4360794 YP_782026.1 CDS phnH NC_008435.1 3474460 3475071 R PFAM: phosphonate metabolism; KEGG: rpb:RPB_4090 phosphonate metabolism; carbon-phosphorus lyase complex subunit complement(3474460..3475071) Rhodopseudomonas palustris BisA53 4360795 YP_782027.1 CDS RPE_3110 NC_008435.1 3475074 3475532 R PFAM: phosphonate metabolism PhnG; KEGG: rpd:RPD_3825 phosphonate metabolism PhnG; phosphonate metabolism PhnG complement(3475074..3475532) Rhodopseudomonas palustris BisA53 4360796 YP_782028.1 CDS RPE_3111 NC_008435.1 3475645 3476373 D TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: rpd:RPD_3824 phosphonate C-P lyase system, transcriptional regulator PhnF; GntR family transcriptional regulator 3475645..3476373 Rhodopseudomonas palustris BisA53 4360797 YP_782029.1 CDS RPE_3112 NC_008435.1 3476526 3477392 R TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_4087 phosphonate uptake transporter; phosphonate ABC transporter inner membrane protein complement(3476526..3477392) Rhodopseudomonas palustris BisA53 4360798 YP_782030.1 CDS RPE_3113 NC_008435.1 3477389 3478270 R TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_4086 phosphonate uptake transporter; phosphonate ABC transporter inner membrane protein complement(3477389..3478270) Rhodopseudomonas palustris BisA53 4360799 YP_782031.1 CDS RPE_3114 NC_008435.1 3478333 3479241 R TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: rpb:RPB_4085 phosphonate-binding periplasmic protein; phosphonate ABC transporter periplasmic phosphonate-binding protein complement(3478333..3479241) Rhodopseudomonas palustris BisA53 4360800 YP_782032.1 CDS RPE_3115 NC_008435.1 3479387 3480265 R KEGG: rpa:RPA0700 PhnC protein, phosphonate ABC transporter, ATP-binding component; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate ABC transporter ATP-binding protein complement(3479387..3480265) Rhodopseudomonas palustris BisA53 4360801 YP_782033.1 CDS RPE_3116 NC_008435.1 3480364 3481032 D KEGG: rpc:RPC_4433 putative acetyltransferase (virginiamycin, streptogramin A, chloramphenicol); putative acetyltransferase 3480364..3481032 Rhodopseudomonas palustris BisA53 4360802 YP_782034.1 CDS RPE_3117 NC_008435.1 3481029 3482222 D TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: rpc:RPC_4434 phosphonate metabolism PhnM; phosphonate metabolism protein PhnM 3481029..3482222 Rhodopseudomonas palustris BisA53 4360803 YP_782035.1 CDS RPE_3118 NC_008435.1 3482243 3482947 D PFAM: protein of unknown function DUF1045; KEGG: rpa:RPA0703 hypothetical protein; hypothetical protein 3482243..3482947 Rhodopseudomonas palustris BisA53 4360804 YP_782036.1 CDS minE NC_008435.1 3482990 3483250 R works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE complement(3482990..3483250) Rhodopseudomonas palustris BisA53 4360805 YP_782037.1 CDS RPE_3120 NC_008435.1 3483247 3484062 R TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: bja:blr4212 putative cell division inhibitor protein; septum site-determining protein MinD complement(3483247..3484062) Rhodopseudomonas palustris BisA53 4360806 YP_782038.1 CDS minC NC_008435.1 3484081 3484773 R blocks the formation of polar Z-ring septums; septum formation inhibitor complement(3484081..3484773) Rhodopseudomonas palustris BisA53 4360807 YP_782039.1 CDS RPE_3122 NC_008435.1 3485034 3486662 R catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase complement(3485034..3486662) Rhodopseudomonas palustris BisA53 4360808 YP_782040.1 CDS RPE_3123 NC_008435.1 3486677 3487450 R PFAM: cobalamin-5-phosphate synthase CobS; KEGG: rpd:RPD_2325 cobalamin 5'-phosphate synthase; cobalamin-5-phosphate synthase CobS complement(3486677..3487450) Rhodopseudomonas palustris BisA53 4360809 YP_782041.1 CDS RPE_3125 NC_008435.1 3488263 3488589 D KEGG: rpb:RPB_3280 hypothetical protein; hypothetical protein 3488263..3488589 Rhodopseudomonas palustris BisA53 4360811 YP_782042.1 CDS RPE_3126 NC_008435.1 3488655 3489488 R PFAM: periplasmic binding protein; KEGG: rpc:RPC_4256 periplasmic binding protein; periplasmic binding protein complement(3488655..3489488) Rhodopseudomonas palustris BisA53 4360812 YP_782043.1 CDS RPE_3127 NC_008435.1 3489506 3490288 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_2923 ABC transporter related; ABC transporter-like protein complement(3489506..3490288) Rhodopseudomonas palustris BisA53 4360813 YP_782044.1 CDS RPE_3128 NC_008435.1 3490285 3491304 R PFAM: transport system permease protein; KEGG: rpd:RPD_2924 transport system permease protein; transport system permease complement(3490285..3491304) Rhodopseudomonas palustris BisA53 4360814 YP_782045.1 CDS RPE_3129 NC_008435.1 3491896 3492426 R KEGG: rpc:RPC_1917 MxaD protein, putative; MxaD protein complement(3491896..3492426) Rhodopseudomonas palustris BisA53 4360815 YP_782046.1 CDS RPE_3130 NC_008435.1 3492439 3493413 R SMART: von Willebrand factor, type A; KEGG: rpc:RPC_1916 von Willebrand factor, type A; von Willebrand factor, type A complement(3492439..3493413) Rhodopseudomonas palustris BisA53 4360816 YP_782047.1 CDS RPE_3131 NC_008435.1 3493410 3494027 R KEGG: rpc:RPC_1915 hypothetical protein; hypothetical protein complement(3493410..3494027) Rhodopseudomonas palustris BisA53 4360817 YP_782048.1 CDS RPE_3132 NC_008435.1 3494024 3495022 R PFAM: von Willebrand factor, type A; KEGG: rpc:RPC_1914 von Willebrand factor, type A; von Willebrand factor, type A complement(3494024..3495022) Rhodopseudomonas palustris BisA53 4360818 YP_782049.1 CDS RPE_3133 NC_008435.1 3495022 3495924 R KEGG: rpc:RPC_1913 MxaA protein, putative; MxaA protein complement(3495022..3495924) Rhodopseudomonas palustris BisA53 4360819 YP_782050.1 CDS RPE_3134 NC_008435.1 3495921 3496802 R KEGG: rpc:RPC_1912 hypothetical protein; hypothetical protein complement(3495921..3496802) Rhodopseudomonas palustris BisA53 4360820 YP_782051.1 CDS RPE_3135 NC_008435.1 3496814 3497866 R PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpc:RPC_1911 ATPase associated with various cellular activities, AAA_3; ATPase complement(3496814..3497866) Rhodopseudomonas palustris BisA53 4360821 YP_782052.1 CDS RPE_3136 NC_008435.1 3497969 3498265 R PFAM: methanol dehydrogenase, beta subunit; KEGG: rpc:RPC_1910 methanol dehydrogenase, beta subunit; methanol dehydrogenase subunit beta complement(3497969..3498265) Rhodopseudomonas palustris BisA53 4360822 YP_782053.1 CDS RPE_3137 NC_008435.1 3498259 3498921 R PFAM: cytochrome c, class I; KEGG: rpc:RPC_1909 cytochrome c, class I; cytochrome c, class I complement(3498259..3498921) Rhodopseudomonas palustris BisA53 4360823 YP_782054.1 CDS RPE_3138 NC_008435.1 3498926 3499864 R SMART: extracellular solute-binding protein, family 3; KEGG: rpc:RPC_1908 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(3498926..3499864) Rhodopseudomonas palustris BisA53 4360824 YP_782055.1 CDS RPE_3139 NC_008435.1 3499997 3501871 R PFAM: Pyrrolo-quinoline quinone; KEGG: rpc:RPC_1907 pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone complement(3499997..3501871) Rhodopseudomonas palustris BisA53 4360825 YP_782056.1 CDS RPE_3140 NC_008435.1 3502209 3502718 D KEGG: rpc:RPC_1906 hypothetical protein; hypothetical protein 3502209..3502718 Rhodopseudomonas palustris BisA53 4360826 YP_782057.1 CDS RPE_3141 NC_008435.1 3502724 3504196 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: rpc:RPC_1905 putative signal transduction histidine kinase; putative signal transduction histidine kinase 3502724..3504196 Rhodopseudomonas palustris BisA53 4360827 YP_782058.1 CDS RPE_3142 NC_008435.1 3504193 3504849 D PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: rpc:RPC_1904 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 3504193..3504849 Rhodopseudomonas palustris BisA53 4360828 YP_782059.1 CDS RPE_3143 NC_008435.1 3505026 3505547 R PFAM: ferric-uptake regulator; KEGG: rpc:RPC_0350 ferric uptake regulator, FUR family; ferric uptake regulator family protein complement(3505026..3505547) Rhodopseudomonas palustris BisA53 4360829 YP_782060.1 CDS RPE_3144 NC_008435.1 3505773 3506627 R TIGRFAM: TonB family protein; KEGG: rpa:RPA2129 possible energy transducer TonB, C-terminal region; TonB family protein complement(3505773..3506627) Rhodopseudomonas palustris BisA53 4360830 YP_782061.1 CDS RPE_3145 NC_008435.1 3506624 3507064 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpa:RPA2128 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(3506624..3507064) Rhodopseudomonas palustris BisA53 4360831 YP_782062.1 CDS RPE_3146 NC_008435.1 3507068 3507856 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: rpa:RPA2127 putative exbB, uptake of enterochelin; tonB-dependent uptake of B colicins; MotA/TolQ/ExbB proton channel complement(3507068..3507856) Rhodopseudomonas palustris BisA53 4360832 YP_782063.1 CDS RPE_3147 NC_008435.1 3507849 3508364 R PFAM: protein of unknown function DUF1008; KEGG: rpc:RPC_1975 protein of unknown function DUF1008; hypothetical protein complement(3507849..3508364) Rhodopseudomonas palustris BisA53 4360833 YP_782064.1 CDS RPE_3148 NC_008435.1 3508402 3508788 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rpc:RPC_1974 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase complement(3508402..3508788) Rhodopseudomonas palustris BisA53 4360834 YP_782065.1 CDS RPE_3149 NC_008435.1 3508864 3511203 R TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpc:RPC_1973 TonB-dependent haem/haemoglobin receptor; TonB-dependent heme/hemoglobin receptor family protein complement(3508864..3511203) Rhodopseudomonas palustris BisA53 4360835 YP_782066.1 CDS RPE_3150 NC_008435.1 3511398 3512072 R PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: rpc:RPC_1972 NmrA-like; NAD-dependent epimerase/dehydratase complement(3511398..3512072) Rhodopseudomonas palustris BisA53 4360836 YP_782067.1 CDS RPE_3151 NC_008435.1 3512120 3513532 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(3512120..3513532) Rhodopseudomonas palustris BisA53 4360837 YP_782068.1 CDS RPE_3152 NC_008435.1 3513866 3514072 D KEGG: rpc:RPC_1970 hypothetical protein; hypothetical protein 3513866..3514072 Rhodopseudomonas palustris BisA53 4360838 YP_782069.1 CDS RPE_3153 NC_008435.1 3514117 3515052 D PFAM: periplasmic binding protein; KEGG: rpc:RPC_1969 periplasmic binding protein; periplasmic binding protein 3514117..3515052 Rhodopseudomonas palustris BisA53 4360839 YP_782070.1 CDS RPE_3154 NC_008435.1 3515049 3516143 D PFAM: transport system permease protein; KEGG: rpc:RPC_1968 transport system permease protein; transport system permease 3515049..3516143 Rhodopseudomonas palustris BisA53 4360840 YP_782071.1 CDS hmuV NC_008435.1 3516140 3516952 D with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 3516140..3516952 Rhodopseudomonas palustris BisA53 4360841 YP_782072.1 CDS RPE_3156 NC_008435.1 3516949 3517239 D hypothetical protein 3516949..3517239 Rhodopseudomonas palustris BisA53 4360842 YP_782073.1 CDS RPE_3157 NC_008435.1 3517236 3517568 D KEGG: rpc:RPC_3616 hypothetical protein; hypothetical protein 3517236..3517568 Rhodopseudomonas palustris BisA53 4360843 YP_782074.1 CDS RPE_3158 NC_008435.1 3517565 3517840 R KEGG: bja:blr8041 hypothetical protein; hypothetical protein complement(3517565..3517840) Rhodopseudomonas palustris BisA53 4360844 YP_782075.1 CDS RPE_3159 NC_008435.1 3518162 3518494 D hypothetical protein 3518162..3518494 Rhodopseudomonas palustris BisA53 4360845 YP_782076.1 CDS RPE_3160 NC_008435.1 3518592 3519407 D PFAM: protein of unknown function DUF155; KEGG: nha:Nham_0703 protein of unknown function DUF155; hypothetical protein 3518592..3519407 Rhodopseudomonas palustris BisA53 4360846 YP_782077.1 CDS RPE_3161 NC_008435.1 3519566 3521923 R KEGG: bur:Bcep18194_B2635 hypothetical protein; hypothetical protein complement(3519566..3521923) Rhodopseudomonas palustris BisA53 4360847 YP_782078.1 CDS RPE_3162 NC_008435.1 3522116 3523309 R TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: sme:SMb21184 putative acetate kinase (acetokinase) protein; acetate kinase complement(3522116..3523309) Rhodopseudomonas palustris BisA53 4360848 YP_782079.1 CDS RPE_3163 NC_008435.1 3523319 3524752 R PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: rru:Rru_A1468 phosphate butyryltransferase; bifunctional enoyl-CoA hydratase/phosphate acetyltransferase complement(3523319..3524752) Rhodopseudomonas palustris BisA53 4360849 YP_782080.1 CDS RPE_3164 NC_008435.1 3524783 3525553 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rsp:RSP_1256 enoyl-(acyl carrier protein) reductase; short-chain dehydrogenase/reductase SDR complement(3524783..3525553) Rhodopseudomonas palustris BisA53 4360850 YP_782081.1 CDS RPE_3165 NC_008435.1 3525702 3526244 R PFAM: GCN5-related N-acetyltransferase; KEGG: rpa:RPA2052 putative phophinothricin N-acetyltransferase; N-acetyltransferase GCN5 complement(3525702..3526244) Rhodopseudomonas palustris BisA53 4360851 YP_782082.1 CDS RPE_3166 NC_008435.1 3526274 3528631 R PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: rpa:RPA2051 putative ornithine decarboxylase; ornithine decarboxylase complement(3526274..3528631) Rhodopseudomonas palustris BisA53 4360852 YP_782083.1 CDS RPE_3167 NC_008435.1 3528680 3528955 R hypothetical protein complement(3528680..3528955) Rhodopseudomonas palustris BisA53 4360853 YP_782084.1 CDS RPE_3168 NC_008435.1 3529025 3530407 D hypothetical protein 3529025..3530407 Rhodopseudomonas palustris BisA53 4360854 YP_782085.1 CDS RPE_3169 NC_008435.1 3530276 3532648 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase complement(3530276..3532648) Rhodopseudomonas palustris BisA53 4360855 YP_782086.1 CDS RPE_3170 NC_008435.1 3533075 3533695 R PFAM: protein of unknown function DUF208; KEGG: rpc:RPC_3509 protein of unknown function DUF208; hypothetical protein complement(3533075..3533695) Rhodopseudomonas palustris BisA53 4360856 YP_782087.1 CDS RPE_3171 NC_008435.1 3533717 3534445 R KEGG: rpc:RPC_3510 methylisocitrate lyase; methylisocitrate lyase complement(3533717..3534445) Rhodopseudomonas palustris BisA53 4360857 YP_782088.1 CDS RPE_3173 NC_008435.1 3534737 3535186 R PFAM: thioesterase superfamily protein; KEGG: rpc:RPC_3513 thioesterase superfamily; thioesterase superfamily protein complement(3534737..3535186) Rhodopseudomonas palustris BisA53 4360859 YP_782089.1 CDS RPE_3174 NC_008435.1 3535317 3536735 D PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: rpc:RPC_3514 transcriptional regulator, XRE family; XRE family transcriptional regulator 3535317..3536735 Rhodopseudomonas palustris BisA53 4360860 YP_782090.1 CDS RPE_3175 NC_008435.1 3536751 3537410 R TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: rpc:RPC_3515 ribonucleoside-triphosphate reductase, anaerobic-like; anaerobic ribonucleoside-triphosphate reductase activating protein complement(3536751..3537410) Rhodopseudomonas palustris BisA53 4360861 YP_782091.1 CDS RPE_3176 NC_008435.1 3537595 3539616 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(3537595..3539616) Rhodopseudomonas palustris BisA53 4360862 YP_782092.1 CDS RPE_3177 NC_008435.1 3540221 3540892 R PFAM: ribonucleotide reductase; KEGG: rpc:RPC_3518 ribonucleoside-diphosphate reductase; ribonucleotide reductase complement(3540221..3540892) Rhodopseudomonas palustris BisA53 4360863 YP_782093.1 CDS RPE_3178 NC_008435.1 3540920 3541078 R KEGG: zmo:ZMO1201 glycine/serine hydroxymethyltransferase; glycine/serine hydroxymethyltransferase complement(3540920..3541078) Rhodopseudomonas palustris BisA53 4360864 YP_782094.1 CDS RPE_3179 NC_008435.1 3541737 3541928 D KEGG: rpd:RPD_3220 hypothetical protein; hypothetical protein 3541737..3541928 Rhodopseudomonas palustris BisA53 4360865 YP_782095.1 CDS RPE_3180 NC_008435.1 3542191 3542976 D PFAM: NLPA lipoprotein; KEGG: rpa:RPA1430 putative outer membrane protein; NLPA lipoprotein 3542191..3542976 Rhodopseudomonas palustris BisA53 4360866 YP_782096.1 CDS RPE_3181 NC_008435.1 3543057 3544394 D KEGG: rpd:RPD_3222 phenylacetate--CoA ligase; phenylacetate--CoA ligase 3543057..3544394 Rhodopseudomonas palustris BisA53 4360867 YP_782097.1 CDS RPE_3182 NC_008435.1 3544595 3545368 R TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: rpd:RPD_3223 lipoprotein YaeC; YaeC family lipoprotein complement(3544595..3545368) Rhodopseudomonas palustris BisA53 4360868 YP_782098.1 CDS RPE_3183 NC_008435.1 3545398 3546063 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpd:RPD_3224 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(3545398..3546063) Rhodopseudomonas palustris BisA53 4360869 YP_782099.1 CDS metN NC_008435.1 3546053 3547168 R part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit complement(3546053..3547168) Rhodopseudomonas palustris BisA53 4360870 YP_782100.1 CDS RPE_3185 NC_008435.1 3547339 3548289 R KEGG: rpd:RPD_3226 serine O-acetyltransferase; Serine O-acetyltransferase complement(3547339..3548289) Rhodopseudomonas palustris BisA53 4360871 YP_782101.1 CDS RPE_3186 NC_008435.1 3548294 3550282 R TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; KEGG: rpd:RPD_3227 cysteine desulfurases, SufS subfamily; SufS subfamily cysteine desulfurase complement(3548294..3550282) Rhodopseudomonas palustris BisA53 4360872 YP_782102.1 CDS RPE_3187 NC_008435.1 3550269 3551213 R KEGG: rpd:RPD_3228 hypothetical protein; hypothetical protein complement(3550269..3551213) Rhodopseudomonas palustris BisA53 4360873 YP_782103.1 CDS RPE_3188 NC_008435.1 3551557 3552810 R PFAM: oxidoreductase/nitrogenase, component 1; KEGG: rpa:RPA2617 possible vanadium nitrogenase associated protein VnfN (U51863); oxidoreductase/nitrogenase, component 1 complement(3551557..3552810) Rhodopseudomonas palustris BisA53 4360874 YP_782104.1 CDS RPE_3189 NC_008435.1 3552810 3554168 R PFAM: oxidoreductase/nitrogenase, component 1; KEGG: rpa:RPA2616 possible nitrogenase iron-molybdenum cofactor biosynthesis protein NifE homolog; oxidoreductase/nitrogenase, component 1 complement(3552810..3554168) Rhodopseudomonas palustris BisA53 4360875 YP_782105.1 CDS RPE_3190 NC_008435.1 3554170 3555045 R PFAM: NifH/frxC-family protein; KEGG: rpa:RPA2615 putative nitrogenase iron protein (nitrogenase component II) (nitrogenase reductase); nitrogenase complement(3554170..3555045) Rhodopseudomonas palustris BisA53 4360876 YP_782106.1 CDS RPE_3191 NC_008435.1 3555091 3556524 R PFAM: Radical SAM domain protein; KEGG: rpa:RPA2614 hypothetical protein; radical SAM domain-containing protein complement(3555091..3556524) Rhodopseudomonas palustris BisA53 4360877 YP_782107.1 CDS RPE_3192 NC_008435.1 3556688 3557644 D KEGG: rpa:RPA2608 possible sulfonate binding protein; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein, family 3; aliphatic sulfonate ABC transporter periplasmic ligand-binding protein 3556688..3557644 Rhodopseudomonas palustris BisA53 4360878 YP_782108.1 CDS RPE_3193 NC_008435.1 3557975 3559150 D catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase 3557975..3559150 Rhodopseudomonas palustris BisA53 4360879 YP_782109.1 CDS RPE_3194 NC_008435.1 3559147 3559953 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA2611 putative aliphatic sulfonate transport membrane component. permease subunit of an ABC transporter; binding-protein-dependent transport system inner membrane protein 3559147..3559953 Rhodopseudomonas palustris BisA53 4360880 YP_782110.1 CDS RPE_3195 NC_008435.1 3559963 3560808 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA2610 aliphatic sulfonate transport ATP-binding protein, subunit of ABC transporter; ABC transporter-like protein 3559963..3560808 Rhodopseudomonas palustris BisA53 4360881 YP_782111.1 CDS RPE_3196 NC_008435.1 3560817 3561389 D PFAM: flavin reductase domain protein, FMN-binding; KEGG: bja:bll7007 putative oxidoreductase; flavin reductase domain-containing protein 3560817..3561389 Rhodopseudomonas palustris BisA53 4360882 YP_782112.1 CDS RPE_3197 NC_008435.1 3561439 3562416 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: sil:SPO0796 hypothetical protein; NAD-dependent epimerase/dehydratase complement(3561439..3562416) Rhodopseudomonas palustris BisA53 4360883 YP_782113.1 CDS RPE_3198 NC_008435.1 3562413 3563327 R PFAM: Bile acid:sodium symporter; KEGG: sil:SPO0797 bile acid transporter family protein; bile acid:sodium symporter complement(3562413..3563327) Rhodopseudomonas palustris BisA53 4360884 YP_782114.1 CDS RPE_3199 NC_008435.1 3563338 3563670 R KEGG: afu:AF2100 acetolactate synthase large subunit; acetolactate synthase large subunit complement(3563338..3563670) Rhodopseudomonas palustris BisA53 4360885 YP_782115.1 CDS RPE_3200 NC_008435.1 3563667 3564263 R PFAM: thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: afu:AF2100 acetolactate synthase large subunit; thiamine pyrophosphate binding domain-containing protein complement(3563667..3564263) Rhodopseudomonas palustris BisA53 4360886 YP_782116.1 CDS RPE_3201 NC_008435.1 3564347 3566116 R catalyzes the formation of acetyl phosphate and sulfite from 2-sulfoacetaldehyde; is active when grown on taurine as a sole carbon source; sulfoacetaldehyde acetyltransferase complement(3564347..3566116) Rhodopseudomonas palustris BisA53 4360887 YP_782117.1 CDS RPE_3202 NC_008435.1 3566183 3567103 R TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: mth:MTH563 succinyl-CoA synthetase alpha chain; succinyl-CoA synthetase subunit alpha complement(3566183..3567103) Rhodopseudomonas palustris BisA53 4360888 YP_782118.1 CDS RPE_3203 NC_008435.1 3567100 3568227 R PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; KEGG: ttj:TTHA0538 succinyl-CoA synthetase beta chain; succinate--CoA ligase (ADP-forming) complement(3567100..3568227) Rhodopseudomonas palustris BisA53 4360889 YP_782119.1 CDS RPE_3204 NC_008435.1 3568244 3569680 R KEGG: dsy:DSY0244 hypothetical protein; hypothetical protein complement(3568244..3569680) Rhodopseudomonas palustris BisA53 4360890 YP_782120.1 CDS RPE_3205 NC_008435.1 3570045 3571013 D KEGG: pst:PSPTO2423 ABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein, family 3; aliphatic sulfonate ABC transporter periplasmic ligand-binding protein 3570045..3571013 Rhodopseudomonas palustris BisA53 4360891 YP_782121.1 CDS RPE_3206 NC_008435.1 3571861 3572103 R hypothetical protein complement(3571861..3572103) Rhodopseudomonas palustris BisA53 4360892 YP_782122.1 CDS RPE_3207 NC_008435.1 3572229 3572960 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:bll3423 ABC transporter ATP-binding protein; ABC transporter-like protein complement(3572229..3572960) Rhodopseudomonas palustris BisA53 4360893 YP_782123.1 CDS RPE_3208 NC_008435.1 3572957 3574711 R PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: bja:bll3424 ABC transporter ATP-binding/permease protein; ABC transporter-like protein complement(3572957..3574711) Rhodopseudomonas palustris BisA53 4360894 YP_782124.1 CDS RPE_3209 NC_008435.1 3574708 3575763 R PFAM: inner-membrane translocator; KEGG: bja:bll3425 ABC transporter permease protein; inner-membrane translocator complement(3574708..3575763) Rhodopseudomonas palustris BisA53 4360895 YP_782125.1 CDS RPE_3210 NC_008435.1 3575773 3576075 R KEGG: bja:blr6087 3-hydroxybutyryl-CoA dehydrogenase; hypothetical protein complement(3575773..3576075) Rhodopseudomonas palustris BisA53 4360896 YP_782126.1 CDS RPE_3211 NC_008435.1 3576558 3577712 D PFAM: Extracellular ligand-binding receptor; KEGG: bja:bll3426 ABC transporter substrate-binding protein; extracellular ligand-binding receptor 3576558..3577712 Rhodopseudomonas palustris BisA53 4360897 YP_782127.1 CDS RPE_3212 NC_008435.1 3577780 3578970 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: eba:ebA2066 putative CoA-transferase protein, (family III); L-carnitine dehydratase/bile acid-inducible protein F complement(3577780..3578970) Rhodopseudomonas palustris BisA53 4360898 YP_782128.1 CDS RPE_3213 NC_008435.1 3578967 3581351 R PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: eba:ebA2064 large subunit of molybdenum enzyme; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase complement(3578967..3581351) Rhodopseudomonas palustris BisA53 4360899 YP_782129.1 CDS RPE_3214 NC_008435.1 3581363 3581833 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: eba:ebA2063 small Fe/S-containing subunit of molybdenum enzyme; 2Fe-2S iron-sulfur cluster binding domain-containing protein complement(3581363..3581833) Rhodopseudomonas palustris BisA53 4360900 YP_782130.1 CDS RPE_3215 NC_008435.1 3581817 3582683 R PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: eba:ebA2062 medium FAD-binding subunit of molybdenum enzyme; molybdopterin dehydrogenase protein complement(3581817..3582683) Rhodopseudomonas palustris BisA53 4360901 YP_782131.1 CDS RPE_3216 NC_008435.1 3582683 3584380 R PFAM: Hydantoinase B/oxoprolinase; KEGG: eba:ebA2053 hydantoin utilization protein B; 5-oxoprolinase complement(3582683..3584380) Rhodopseudomonas palustris BisA53 4360902 YP_782132.1 CDS RPE_3217 NC_008435.1 3584377 3586506 R PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: eba:ebA2051 hydantoin utilization protein A; 5-oxoprolinase complement(3584377..3586506) Rhodopseudomonas palustris BisA53 4360903 YP_782133.1 CDS RPE_3218 NC_008435.1 3586503 3588038 R PFAM: AMP-dependent synthetase and ligase; KEGG: eba:ebA2050 putative ADP-producing CoA ligase, similar to feruloyl-CoA synthetase; AMP-dependent synthetase and ligase complement(3586503..3588038) Rhodopseudomonas palustris BisA53 4360904 YP_782134.1 CDS RPE_3219 NC_008435.1 3588043 3589251 R PFAM: Thiolase; KEGG: eba:ebA2049 putative beta-oxoacyl-CoA thiolase; thiolase complement(3588043..3589251) Rhodopseudomonas palustris BisA53 4360905 YP_782135.1 CDS RPE_3220 NC_008435.1 3589235 3589936 R PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: eba:ebA2047 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(3589235..3589936) Rhodopseudomonas palustris BisA53 4360906 YP_782136.1 CDS RPE_3221 NC_008435.1 3590018 3590818 D KEGG: bxe:Bxe_B2310 hypothetical protein; hypothetical protein 3590018..3590818 Rhodopseudomonas palustris BisA53 4360907 YP_782137.1 CDS RPE_3222 NC_008435.1 3590829 3591965 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: eba:ebA2055 putative acyl-CoA dehydrogenase; butyryl-CoA dehydrogenase 3590829..3591965 Rhodopseudomonas palustris BisA53 4360908 YP_782138.1 CDS RPE_3223 NC_008435.1 3591958 3592353 D TIGRFAM: Methylmalonyl-CoA mutase-like; PFAM: cobalamin B12-binding domain protein; KEGG: eba:ebD52 methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding); methylmalonyl-CoA mutase-like protein 3591958..3592353 Rhodopseudomonas palustris BisA53 4360909 YP_782139.1 CDS RPE_3224 NC_008435.1 3592350 3593981 D KEGG: eba:ebA2060 methylmalonyl-CoA mutase subunit alpha; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; methylmalonyl-CoA mutase large subunit 3592350..3593981 Rhodopseudomonas palustris BisA53 4360910 YP_782140.1 CDS RPE_3225 NC_008435.1 3593998 3596013 D PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: eba:ebA2038 fusion of 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase 3593998..3596013 Rhodopseudomonas palustris BisA53 4360911 YP_782141.1 CDS RPE_3226 NC_008435.1 3596138 3596533 R PFAM: Endoribonuclease L-PSP; KEGG: eba:ebA2097 hypothetical protein; endoribonuclease L-PSP complement(3596138..3596533) Rhodopseudomonas palustris BisA53 4360912 YP_782142.1 CDS RPE_3227 NC_008435.1 3596542 3598206 R PFAM: AMP-dependent synthetase and ligase; KEGG: mlo:mlr0619 probable acid-CoA ligase; AMP-dependent synthetase and ligase complement(3596542..3598206) Rhodopseudomonas palustris BisA53 4360913 YP_782143.1 CDS RPE_3228 NC_008435.1 3598257 3599039 R PFAM: short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: rso:RS02008 probable oxidoreductase protein; short-chain dehydrogenase/reductase SDR complement(3598257..3599039) Rhodopseudomonas palustris BisA53 4360914 YP_782144.1 CDS RPE_3229 NC_008435.1 3599036 3601357 R catalyzes the conversion of salicylyl-CoA to gentisyl-CoA; salicylyl-CoA 5-hydroxylase complement(3599036..3601357) Rhodopseudomonas palustris BisA53 4360915 YP_782145.1 CDS RPE_3230 NC_008435.1 3601473 3602000 D PFAM: regulatory protein, MarR; KEGG: bja:bll6077 transcriptional regulatory protein; MarR family transcriptional regulator 3601473..3602000 Rhodopseudomonas palustris BisA53 4360916 YP_782146.1 CDS RPE_3231 NC_008435.1 3602226 3602630 R PFAM: BLUF domain protein; KEGG: rpc:RPC_2562 BLUF; BLUF domain-containing protein complement(3602226..3602630) Rhodopseudomonas palustris BisA53 4360917 YP_782147.1 CDS RPE_3232 NC_008435.1 3602861 3603064 D KEGG: sil:SPO2719 hypothetical protein; hypothetical protein 3602861..3603064 Rhodopseudomonas palustris BisA53 4360918 YP_782148.1 CDS RPE_3233 NC_008435.1 3603061 3603336 D TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: mlo:msl7485 hypothetical protein; AbrB family transcriptional regulator 3603061..3603336 Rhodopseudomonas palustris BisA53 4360919 YP_782149.1 CDS RPE_3234 NC_008435.1 3603323 3603712 D KEGG: nwi:Nwi_3084 PilT protein; PilT protein 3603323..3603712 Rhodopseudomonas palustris BisA53 4360920 YP_782150.1 CDS RPE_3235 NC_008435.1 3603791 3604768 R hypothetical protein complement(3603791..3604768) Rhodopseudomonas palustris BisA53 4360921 YP_782151.1 CDS RPE_3236 NC_008435.1 3605465 3605707 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: sme:SMc00392 hypothetical protein; prevent-host-death family protein 3605465..3605707 Rhodopseudomonas palustris BisA53 4360922 YP_782152.1 CDS RPE_3238 NC_008435.1 3606077 3620032 R TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: rpc:RPC_2997 filamentous haemagglutinin-like; filamentous hemagglutinin outer membrane protein complement(3606077..3620032) Rhodopseudomonas palustris BisA53 4360924 YP_782153.1 CDS RPE_3239 NC_008435.1 3620153 3621178 R PFAM: FecR protein; KEGG: rpa:RPA1340 probable FecR, iron siderophore sensor protein; putative FecR protein complement(3620153..3621178) Rhodopseudomonas palustris BisA53 4360925 YP_782154.1 CDS RPE_3240 NC_008435.1 3621189 3621830 R PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: pae:PA0675 probable sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(3621189..3621830) Rhodopseudomonas palustris BisA53 4360926 YP_782155.1 CDS RPE_3241 NC_008435.1 3621817 3622476 R KEGG: rpa:RPA1338 hypothetical protein; hypothetical protein complement(3621817..3622476) Rhodopseudomonas palustris BisA53 4360927 YP_782156.1 CDS RPE_3242 NC_008435.1 3622785 3622952 D KEGG: bja:bll3896 putative transposase; putative transposase 3622785..3622952 Rhodopseudomonas palustris BisA53 4360928 YP_782157.1 CDS RPE_3243 NC_008435.1 3623089 3623568 R KEGG: rpc:RPC_1899 hypothetical protein; hypothetical protein complement(3623089..3623568) Rhodopseudomonas palustris BisA53 4360929 YP_782158.1 CDS RPE_3244 NC_008435.1 3624015 3624650 R KEGG: rpc:RPC_3137 hypothetical protein; hypothetical protein complement(3624015..3624650) Rhodopseudomonas palustris BisA53 4360930 YP_782159.1 CDS RPE_3245 NC_008435.1 3624966 3625265 D KEGG: rpa:RPA2264 hypothetical protein; hypothetical protein 3624966..3625265 Rhodopseudomonas palustris BisA53 4360931 YP_782160.1 CDS RPE_3246 NC_008435.1 3625262 3625693 D PFAM: PilT protein domain protein; KEGG: mlo:mlr5903 plasmid stabilization protein; PilT domain-containing protein 3625262..3625693 Rhodopseudomonas palustris BisA53 4360932 YP_782161.1 CDS RPE_3247 NC_008435.1 3625817 3627022 D KEGG: atc:AGR_pAT_24 hypothetical protein; hypothetical protein 3625817..3627022 Rhodopseudomonas palustris BisA53 4360933 YP_782162.1 CDS RPE_3248 NC_008435.1 3627702 3628139 D hypothetical protein 3627702..3628139 Rhodopseudomonas palustris BisA53 4360934 YP_782163.1 CDS RPE_3249 NC_008435.1 3628172 3630235 R KEGG: aba:Acid345_4269 hypothetical protein; hypothetical protein complement(3628172..3630235) Rhodopseudomonas palustris BisA53 4360935 YP_782164.1 CDS RPE_3250 NC_008435.1 3630236 3631207 R KEGG: oih:OB0176 hypothetical protein; hypothetical protein complement(3630236..3631207) Rhodopseudomonas palustris BisA53 4360936 YP_782165.1 CDS RPE_3251 NC_008435.1 3631200 3633875 R KEGG: eba:ebA6352 endonuclease; endonuclease complement(3631200..3633875) Rhodopseudomonas palustris BisA53 4360937 YP_782166.1 CDS RPE_3252 NC_008435.1 3633872 3635350 R KEGG: aba:Acid345_4266 hypothetical protein; hypothetical protein complement(3633872..3635350) Rhodopseudomonas palustris BisA53 4360938 YP_782167.1 CDS RPE_3253 NC_008435.1 3635350 3635772 R PFAM: DNA mismatch endonuclease vsr; KEGG: dvu:DVU2843 DNA mismatch endonuclease Vsr, putative; DNA mismatch endonuclease vsr complement(3635350..3635772) Rhodopseudomonas palustris BisA53 4360939 YP_782168.1 CDS RPE_3254 NC_008435.1 3635769 3637538 R KEGG: aba:Acid345_4264 DNA-cytosine methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase complement(3635769..3637538) Rhodopseudomonas palustris BisA53 4360940 YP_782169.1 CDS RPE_3255 NC_008435.1 3637778 3638605 D KEGG: plt:Plut_0513 hypothetical protein; hypothetical protein 3637778..3638605 Rhodopseudomonas palustris BisA53 4360941 YP_782170.1 CDS RPE_3256 NC_008435.1 3638602 3639462 D KEGG: nwi:Nwi_0261 hypothetical protein; hypothetical protein 3638602..3639462 Rhodopseudomonas palustris BisA53 4360942 YP_782171.1 CDS RPE_3257 NC_008435.1 3639459 3639677 R PFAM: Conjugal transfer TraD family protein; KEGG: rpc:RPC_4518 conjugal transfer TraD; conjugal transfer TraD family protein complement(3639459..3639677) Rhodopseudomonas palustris BisA53 4360943 YP_782172.1 CDS RPE_3258 NC_008435.1 3639679 3640020 R KEGG: rpd:RPD_2275 hypothetical protein; hypothetical protein complement(3639679..3640020) Rhodopseudomonas palustris BisA53 4360944 YP_782173.1 CDS RPE_3259 NC_008435.1 3640081 3643197 D MobA/MobL family protein; conjugal transfer relaxase TraA 3640081..3643197 Rhodopseudomonas palustris BisA53 4360945 YP_782174.1 CDS RPE_3260 NC_008435.1 3643328 3643558 D PFAM: Prophage CP4-57 regulatory; KEGG: rpc:RPC_4521 phage transcriptional regulator, AlpA; phage transcriptional regulator, AlpA 3643328..3643558 Rhodopseudomonas palustris BisA53 4360946 YP_782175.1 CDS RPE_3261 NC_008435.1 3643560 3644909 R PFAM: phage integrase family protein; KEGG: dar:Daro_2336 phage integrase; phage integrase family protein complement(3643560..3644909) Rhodopseudomonas palustris BisA53 4360947 YP_782176.1 CDS guaA NC_008435.1 3645131 3646816 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(3645131..3646816) Rhodopseudomonas palustris BisA53 4360948 YP_782177.1 CDS RPE_3263 NC_008435.1 3647827 3649131 R PFAM: Fmu (Sun) domain protein; KEGG: rpc:RPC_3064 Fmu (Sun); Fmu (Sun) domain-containing protein complement(3647827..3649131) Rhodopseudomonas palustris BisA53 4360949 YP_782178.1 CDS RPE_3264 NC_008435.1 3649175 3649597 R PFAM: protein of unknown function DUF1123; KEGG: rpb:RPB_3191 protein of unknown function DUF1123; hypothetical protein complement(3649175..3649597) Rhodopseudomonas palustris BisA53 4360950 YP_782179.1 CDS RPE_3266 NC_008435.1 3650462 3651496 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; KEGG: rpc:RPC_3068 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase complement(3650462..3651496) Rhodopseudomonas palustris BisA53 4360952 YP_782180.1 CDS RPE_3267 NC_008435.1 3651559 3652125 R KEGG: rpc:RPC_3069 hypothetical protein; hypothetical protein complement(3651559..3652125) Rhodopseudomonas palustris BisA53 4360953 YP_782181.1 CDS RPE_3268 NC_008435.1 3652316 3653809 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(3652316..3653809) Rhodopseudomonas palustris BisA53 4360954 YP_782182.1 CDS RPE_3269 NC_008435.1 3654010 3654258 R KEGG: rpc:RPC_3074 hypothetical protein; hypothetical protein complement(3654010..3654258) Rhodopseudomonas palustris BisA53 4360955 YP_782183.1 CDS RPE_3270 NC_008435.1 3655805 3656734 D hypothetical protein 3655805..3656734 Rhodopseudomonas palustris BisA53 4360956 YP_782184.1 CDS RPE_3271 NC_008435.1 3657271 3658746 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rpc:RPC_3075 major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter 3657271..3658746 Rhodopseudomonas palustris BisA53 4360957 YP_782185.1 CDS RPE_3272 NC_008435.1 3658878 3659585 R PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: rpc:RPC_3081 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ complement(3658878..3659585) Rhodopseudomonas palustris BisA53 4360958 YP_782186.1 CDS RPE_3273 NC_008435.1 3659654 3660646 R PFAM: Ppx/GppA phosphatase; KEGG: rpd:RPD_2258 Ppx/GppA phosphatase; Ppx/GppA phosphatase complement(3659654..3660646) Rhodopseudomonas palustris BisA53 4360959 YP_782187.1 CDS RPE_3274 NC_008435.1 3660987 3661448 R PFAM: DoxX family protein; KEGG: rpc:RPC_2341 DoxX; hypothetical protein complement(3660987..3661448) Rhodopseudomonas palustris BisA53 4360960 YP_782188.1 CDS RPE_3275 NC_008435.1 3661636 3663945 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(3661636..3663945) Rhodopseudomonas palustris BisA53 4360961 YP_782189.1 CDS aspS NC_008435.1 3664135 3665907 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(3664135..3665907) Rhodopseudomonas palustris BisA53 4360962 YP_782190.1 CDS RPE_3277 NC_008435.1 3666003 3667580 D PFAM: protein of unknown function UPF0061; KEGG: rpc:RPC_2335 protein of unknown function UPF0061; hypothetical protein 3666003..3667580 Rhodopseudomonas palustris BisA53 4360963 YP_782191.1 CDS RPE_3278 NC_008435.1 3667696 3668874 D TIGRFAM: ribonuclease D; PFAM: 3'-5' exonuclease; KEGG: rpc:RPC_2334 ribonuclease D; ribonuclease D 3667696..3668874 Rhodopseudomonas palustris BisA53 4360964 YP_782192.1 CDS RPE_3279 NC_008435.1 3668871 3669794 D PFAM: protein of unknown function UPF0187; KEGG: rpd:RPD_2950 protein of unknown function UPF0187; hypothetical protein 3668871..3669794 Rhodopseudomonas palustris BisA53 4360965 YP_782193.1 CDS RPE_3280 NC_008435.1 3669817 3671325 R PFAM: Ppx/GppA phosphatase; KEGG: rpc:RPC_2330 Ppx/GppA phosphatase; Ppx/GppA phosphatase complement(3669817..3671325) Rhodopseudomonas palustris BisA53 4360966 YP_782194.1 CDS RPE_3281 NC_008435.1 3671350 3673611 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(3671350..3673611) Rhodopseudomonas palustris BisA53 4360967 YP_782195.1 CDS RPE_3282 NC_008435.1 3673704 3674378 R KEGG: rpc:RPC_2328 chromosomal replication initiator, DnaA; hypothetical protein complement(3673704..3674378) Rhodopseudomonas palustris BisA53 4360968 YP_782196.1 CDS RPE_3283 NC_008435.1 3674438 3674983 R PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rpc:RPC_2327 CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase complement(3674438..3674983) Rhodopseudomonas palustris BisA53 4360969 YP_782197.1 CDS RPE_3284 NC_008435.1 3675250 3676323 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 3675250..3676323 Rhodopseudomonas palustris BisA53 4360970 YP_782198.1 CDS RPE_3285 NC_008435.1 3676329 3676979 D TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: rpc:RPC_2325 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase 3676329..3676979 Rhodopseudomonas palustris BisA53 4360971 YP_782199.1 CDS RPE_3286 NC_008435.1 3677049 3677252 R PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: rpa:RPA3053 cold shock DNA binding protein; cold-shock DNA-binding domain-containing protein complement(3677049..3677252) Rhodopseudomonas palustris BisA53 4360972 YP_782200.1 CDS ndk NC_008435.1 3677694 3678116 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(3677694..3678116) Rhodopseudomonas palustris BisA53 4360973 YP_782201.1 CDS RPE_3288 NC_008435.1 3678603 3680468 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nha:Nham_2336 ABC transporter related; ABC transporter-like protein 3678603..3680468 Rhodopseudomonas palustris BisA53 4360974 YP_782202.1 CDS RPE_3289 NC_008435.1 3680663 3681220 R KEGG: rpc:RPC_2316 hypothetical protein; hypothetical protein complement(3680663..3681220) Rhodopseudomonas palustris BisA53 4360975 YP_782203.1 CDS RPE_3290 NC_008435.1 3681326 3681778 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi complement(3681326..3681778) Rhodopseudomonas palustris BisA53 4360976 YP_782204.1 CDS RPE_3291 NC_008435.1 3681775 3683271 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(3681775..3683271) Rhodopseudomonas palustris BisA53 4360977 YP_782205.1 CDS RPE_3292 NC_008435.1 3683651 3684817 D PFAM: permease YjgP/YjgQ family protein; KEGG: rpc:RPC_2313 permease YjgP/YjgQ; permease YjgP/YjgQ 3683651..3684817 Rhodopseudomonas palustris BisA53 4360978 YP_782206.1 CDS RPE_3293 NC_008435.1 3684831 3685916 D PFAM: permease YjgP/YjgQ family protein; KEGG: rpc:RPC_2312 permease YjgP/YjgQ; permease YjgP/YjgQ 3684831..3685916 Rhodopseudomonas palustris BisA53 4360979 YP_782207.1 CDS RPE_3294 NC_008435.1 3685916 3688399 D PFAM: Organic solvent tolerance protein; KEGG: rpc:RPC_2311 organic solvent tolerance protein; organic solvent tolerance protein 3685916..3688399 Rhodopseudomonas palustris BisA53 4360980 YP_782208.1 CDS RPE_3295 NC_008435.1 3688475 3689392 D KEGG: rpc:RPC_2310 hypothetical protein; hypothetical protein 3688475..3689392 Rhodopseudomonas palustris BisA53 4360981 YP_782209.1 CDS pdxA NC_008435.1 3689483 3690496 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 3689483..3690496 Rhodopseudomonas palustris BisA53 4360982 YP_782210.1 CDS ksgA NC_008435.1 3690493 3691356 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 3690493..3691356 Rhodopseudomonas palustris BisA53 4360983 YP_782211.1 CDS RPE_3298 NC_008435.1 3691371 3692426 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpc:RPC_2307 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 3691371..3692426 Rhodopseudomonas palustris BisA53 4360984 YP_782212.1 CDS RPE_3299 NC_008435.1 3692596 3693504 D KEGG: rpc:RPC_2306 hypothetical protein; hypothetical protein 3692596..3693504 Rhodopseudomonas palustris BisA53 4360985 YP_782213.1 CDS RPE_3300 NC_008435.1 3693537 3694553 R KEGG: rpa:RPA1461 hypothetical protein; hypothetical protein complement(3693537..3694553) Rhodopseudomonas palustris BisA53 4360986 YP_782214.1 CDS gmk NC_008435.1 3694596 3695258 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(3694596..3695258) Rhodopseudomonas palustris BisA53 4360987 YP_782215.1 CDS RPE_3302 NC_008435.1 3695261 3696148 R TIGRFAM: conserved hypothetical protein; PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: rpc:RPC_2304 conserved hypothetical protein 255; hypothetical protein complement(3695261..3696148) Rhodopseudomonas palustris BisA53 4360988 YP_782216.1 CDS RPE_3303 NC_008435.1 3696247 3697503 R PFAM: aminodeoxychorismate lyase; KEGG: rpc:RPC_2303 aminodeoxychorismate lyase; aminodeoxychorismate lyase complement(3696247..3697503) Rhodopseudomonas palustris BisA53 4360989 YP_782217.1 CDS RPE_3304 NC_008435.1 3697679 3698944 R FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II complement(3697679..3698944) Rhodopseudomonas palustris BisA53 4360990 YP_782218.1 CDS acpP NC_008435.1 3699041 3699280 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(3699041..3699280) Rhodopseudomonas palustris BisA53 4360991 YP_782219.1 CDS RPE_3306 NC_008435.1 3699574 3700311 R TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: rpc:RPC_2300 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase complement(3699574..3700311) Rhodopseudomonas palustris BisA53 4360992 YP_782220.1 CDS RPE_3307 NC_008435.1 3700341 3701300 R TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: bja:blr4082 malonyl-CoA:acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase complement(3700341..3701300) Rhodopseudomonas palustris BisA53 4360993 YP_782221.1 CDS RPE_3308 NC_008435.1 3701617 3702903 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpa:RPA3076 putative diguanylate cyclase (GGDEF); diguanylate cyclase 3701617..3702903 Rhodopseudomonas palustris BisA53 4360994 YP_782222.1 CDS rpsF NC_008435.1 3703150 3703623 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 3703150..3703623 Rhodopseudomonas palustris BisA53 4360995 YP_782223.1 CDS rpsR NC_008435.1 3703629 3703868 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 3703629..3703868 Rhodopseudomonas palustris BisA53 4360996 YP_782224.1 CDS RPE_3311 NC_008435.1 3704124 3705053 R KEGG: rpd:RPD_3944 hypothetical protein; hypothetical protein complement(3704124..3705053) Rhodopseudomonas palustris BisA53 4360997 YP_782225.1 CDS RPE_3312 NC_008435.1 3705484 3706347 R KEGG: rpd:RPD_2164 hypothetical protein; hypothetical protein complement(3705484..3706347) Rhodopseudomonas palustris BisA53 4360998 YP_782226.1 CDS RPE_3313 NC_008435.1 3706349 3706618 R KEGG: rpd:RPD_2163 hypothetical protein; hypothetical protein complement(3706349..3706618) Rhodopseudomonas palustris BisA53 4360999 YP_782227.1 CDS RPE_3314 NC_008435.1 3707382 3708371 D KEGG: rpc:RPC_2294 hypothetical protein; hypothetical protein 3707382..3708371 Rhodopseudomonas palustris BisA53 4361000 YP_782228.1 CDS rplI NC_008435.1 3708392 3708976 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 3708392..3708976 Rhodopseudomonas palustris BisA53 4361001 YP_782229.1 CDS RPE_3316 NC_008435.1 3709124 3710443 R KEGG: rpd:RPD_2989 hypothetical protein; hypothetical protein complement(3709124..3710443) Rhodopseudomonas palustris BisA53 4361002 YP_782230.1 CDS RPE_3317 NC_008435.1 3711291 3712787 D unwinds double stranded DNA; replicative DNA helicase 3711291..3712787 Rhodopseudomonas palustris BisA53 4361003 YP_782231.1 CDS RPE_3318 NC_008435.1 3713053 3716892 D KEGG: rru:Rru_A0502 hypothetical protein; hypothetical protein 3713053..3716892 Rhodopseudomonas palustris BisA53 4361004 YP_782232.1 CDS RPE_3319 NC_008435.1 3717013 3717270 D KEGG: rpa:RPA3084 replicative DNA helicase (dnaB); replicative DNA helicase-like protein 3717013..3717270 Rhodopseudomonas palustris BisA53 4361005 YP_782233.1 CDS RPE_3320 NC_008435.1 3717815 3719032 D PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0827 ABC transporter, permease protein, putative; hypothetical protein 3717815..3719032 Rhodopseudomonas palustris BisA53 4361006 YP_782234.1 CDS RPE_3321 NC_008435.1 3719029 3719754 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvu:DVUA0022 ABC transporter, ATP-binding protein; ABC transporter-like protein 3719029..3719754 Rhodopseudomonas palustris BisA53 4361007 YP_782235.1 CDS RPE_3322 NC_008435.1 3719754 3720806 D PFAM: secretion protein HlyD family protein; KEGG: aba:Acid345_4021 secretion protein HlyD; secretion protein HlyD family protein 3719754..3720806 Rhodopseudomonas palustris BisA53 4361008 YP_782236.1 CDS RPE_3323 NC_008435.1 3720831 3721943 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpa:RPA2367 two component sensor histidine kinase, possible AdeS; periplasmic sensor signal transduction histidine kinase complement(3720831..3721943) Rhodopseudomonas palustris BisA53 4361009 YP_782237.1 CDS RPE_3324 NC_008435.1 3721940 3722626 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_2735 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(3721940..3722626) Rhodopseudomonas palustris BisA53 4361010 YP_782238.1 CDS RPE_3325 NC_008435.1 3722699 3723022 R KEGG: ret:RHE_CH02686 hypothetical protein; hypothetical protein complement(3722699..3723022) Rhodopseudomonas palustris BisA53 4361011 YP_782239.1 CDS RPE_3326 NC_008435.1 3723322 3724551 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rpa:RPA2371 putative RND multidrug efflux membrane fusion protein MexA precursor; RND family efflux transporter MFP subunit 3723322..3724551 Rhodopseudomonas palustris BisA53 4361012 YP_782240.1 CDS RPE_3327 NC_008435.1 3724548 3727715 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rpa:RPA2372 RND multidrug efflux transporter MexB; hydrophobe/amphiphile efflux-1 (HAE1) family protein 3724548..3727715 Rhodopseudomonas palustris BisA53 4361013 YP_782241.1 CDS RPE_3328 NC_008435.1 3727726 3728115 D KEGG: rpa:RPA2374 hypothetical protein; hypothetical protein 3727726..3728115 Rhodopseudomonas palustris BisA53 4361014 YP_782242.1 CDS RPE_3330 NC_008435.1 3728437 3730044 D KEGG: rpa:RPA2375 hypothetical protein; hypothetical protein 3728437..3730044 Rhodopseudomonas palustris BisA53 4361016 YP_782243.1 CDS RPE_3331 NC_008435.1 3730122 3730217 D KEGG: rpa:RPA2374 hypothetical protein; hypothetical protein 3730122..3730217 Rhodopseudomonas palustris BisA53 4361017 YP_782244.1 CDS RPE_3332 NC_008435.1 3730265 3730822 D PFAM: GCN5-related N-acetyltransferase; KEGG: rpa:RPA2988 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3730265..3730822 Rhodopseudomonas palustris BisA53 4361018 YP_782245.1 CDS RPE_3333 NC_008435.1 3731055 3732104 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpb:RPB_2521 diguanylate cyclase; diguanylate cyclase 3731055..3732104 Rhodopseudomonas palustris BisA53 4361019 YP_782246.1 CDS RPE_3334 NC_008435.1 3732447 3733661 D KEGG: rpc:RPC_2289 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 3732447..3733661 Rhodopseudomonas palustris BisA53 4361020 YP_782247.1 CDS RPE_3335 NC_008435.1 3733672 3734160 R PFAM: GCN5-related N-acetyltransferase; KEGG: mlo:mlr3150 hypothetical protein; N-acetyltransferase GCN5 complement(3733672..3734160) Rhodopseudomonas palustris BisA53 4361021 YP_782248.1 CDS RPE_3336 NC_008435.1 3734237 3734635 R KEGG: rpd:RPD_2993 hypothetical protein; hypothetical protein complement(3734237..3734635) Rhodopseudomonas palustris BisA53 4361022 YP_782249.1 CDS RPE_3337 NC_008435.1 3735404 3735916 D KEGG: jan:Jann_2415 hypothetical protein; hypothetical protein 3735404..3735916 Rhodopseudomonas palustris BisA53 4361023 YP_782250.1 CDS RPE_3338 NC_008435.1 3736048 3737517 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 3736048..3737517 Rhodopseudomonas palustris BisA53 4361024 YP_782251.1 CDS RPE_3339 NC_008435.1 3737722 3738348 D PFAM: Colicin V production protein; KEGG: rpc:RPC_2283 colicin V production protein; colicin V production protein 3737722..3738348 Rhodopseudomonas palustris BisA53 4361025 YP_782252.1 CDS RPE_3340 NC_008435.1 3738371 3739861 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 3738371..3739861 Rhodopseudomonas palustris BisA53 4361026 YP_782253.1 CDS RPE_3341 NC_008435.1 3739997 3740737 D PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpc:RPC_2281 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3739997..3740737 Rhodopseudomonas palustris BisA53 4361027 YP_782254.1 CDS RPE_3342 NC_008435.1 3740972 3741373 D KEGG: rpd:RPD_1740 hypothetical protein; hypothetical protein 3740972..3741373 Rhodopseudomonas palustris BisA53 4361028 YP_782255.1 CDS RPE_3343 NC_008435.1 3741884 3742192 D KEGG: rpd:RPD_1256 hypothetical protein; hypothetical protein 3741884..3742192 Rhodopseudomonas palustris BisA53 4361029 YP_782256.1 CDS RPE_3344 NC_008435.1 3742208 3743500 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rpc:RPC_2280 major facilitator superfamily MFS_1; major facilitator transporter complement(3742208..3743500) Rhodopseudomonas palustris BisA53 4361030 YP_782257.1 CDS engA NC_008435.1 3743497 3744879 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(3743497..3744879) Rhodopseudomonas palustris BisA53 4361031 YP_782258.1 CDS RPE_3346 NC_008435.1 3744942 3745466 R KEGG: rpc:RPC_2278 hypothetical protein; hypothetical protein complement(3744942..3745466) Rhodopseudomonas palustris BisA53 4361032 YP_782259.1 CDS RPE_3347 NC_008435.1 3745550 3746203 R KEGG: rpc:RPC_2277 hypothetical protein; hypothetical protein complement(3745550..3746203) Rhodopseudomonas palustris BisA53 4361033 YP_782260.1 CDS panB NC_008435.1 3746387 3747208 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(3746387..3747208) Rhodopseudomonas palustris BisA53 4361034 YP_782261.1 CDS RPE_3349 NC_008435.1 3747212 3747796 R PFAM: NnrUfamily protein; KEGG: rpc:RPC_2275 NnrU; NnrU family protein complement(3747212..3747796) Rhodopseudomonas palustris BisA53 4361035 YP_782262.1 CDS RPE_3350 NC_008435.1 3747908 3748900 D PFAM: Uncharacterized protein UPF0065; KEGG: rpd:RPD_3010 twin-arginine translocation pathway signal; hypothetical protein 3747908..3748900 Rhodopseudomonas palustris BisA53 4361036 YP_782263.1 CDS RPE_3351 NC_008435.1 3748971 3749420 R KEGG: rpc:RPC_2273 hypothetical protein; hypothetical protein complement(3748971..3749420) Rhodopseudomonas palustris BisA53 4361037 YP_782264.1 CDS RPE_3352 NC_008435.1 3749586 3749852 R KEGG: rpc:RPC_2272 hypothetical protein; hypothetical protein complement(3749586..3749852) Rhodopseudomonas palustris BisA53 4361038 YP_782265.1 CDS RPE_3353 NC_008435.1 3750064 3750480 R hypothetical protein complement(3750064..3750480) Rhodopseudomonas palustris BisA53 4361039 YP_782266.1 CDS RPE_3354 NC_008435.1 3750613 3750750 R KEGG: rpb:RPB_2441 hypothetical protein; hypothetical protein complement(3750613..3750750) Rhodopseudomonas palustris BisA53 4361040 YP_782267.1 CDS RPE_3355 NC_008435.1 3751026 3751298 R hypothetical protein complement(3751026..3751298) Rhodopseudomonas palustris BisA53 4361041 YP_782268.1 CDS gatB NC_008435.1 3751314 3752798 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(3751314..3752798) Rhodopseudomonas palustris BisA53 4361042 YP_782269.1 CDS RPE_3357 NC_008435.1 3752897 3754282 R PFAM: Patatin; KEGG: rpc:RPC_2266 patatin; patatin complement(3752897..3754282) Rhodopseudomonas palustris BisA53 4361043 YP_782270.1 CDS gatA NC_008435.1 3754447 3755925 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(3754447..3755925) Rhodopseudomonas palustris BisA53 4361044 YP_782271.1 CDS RPE_3359 NC_008435.1 3756106 3756387 D KEGG: rpc:RPC_2263 hypothetical protein; hypothetical protein 3756106..3756387 Rhodopseudomonas palustris BisA53 4361045 YP_782272.1 CDS RPE_3360 NC_008435.1 3756431 3756628 D KEGG: rpc:RPC_2262 hypothetical protein; hypothetical protein 3756431..3756628 Rhodopseudomonas palustris BisA53 4361046 YP_782273.1 CDS RPE_3361 NC_008435.1 3756654 3756860 R KEGG: rpb:RPB_2435 hypothetical protein; hypothetical protein complement(3756654..3756860) Rhodopseudomonas palustris BisA53 4361047 YP_782274.1 CDS gatC NC_008435.1 3756881 3757168 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(3756881..3757168) Rhodopseudomonas palustris BisA53 4361048 YP_782275.1 CDS RPE_3363 NC_008435.1 3757241 3758320 R PFAM: 2-nitropropane dioxygenase, NPD; KEGG: rpa:RPA3112 2-nitropropane dioxygenase; 2-nitropropane dioxygenase complement(3757241..3758320) Rhodopseudomonas palustris BisA53 4361049 YP_782276.1 CDS RPE_3364 NC_008435.1 3758413 3758637 R KEGG: rpc:RPC_2258 hypothetical protein; hypothetical protein complement(3758413..3758637) Rhodopseudomonas palustris BisA53 4361050 YP_782277.1 CDS RPE_3365 NC_008435.1 3758867 3759802 D PFAM: cyclase family protein; KEGG: rpd:RPD_3020 putative cyclase; cyclase family protein 3758867..3759802 Rhodopseudomonas palustris BisA53 4361051 YP_782278.1 CDS RPE_3366 NC_008435.1 3759839 3760456 R PFAM: regulatory protein, TetR; KEGG: rpc:RPC_2257 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3759839..3760456) Rhodopseudomonas palustris BisA53 4361052 YP_782279.1 CDS RPE_3367 NC_008435.1 3760523 3762502 R in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; myosin-cross-reactive antigen complement(3760523..3762502) Rhodopseudomonas palustris BisA53 4361053 YP_782280.1 CDS RPE_3368 NC_008435.1 3762797 3763288 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 3762797..3763288 Rhodopseudomonas palustris BisA53 4361054 YP_782281.1 CDS RPE_3369 NC_008435.1 3763292 3764218 D PFAM: Auxin Efflux Carrier; KEGG: rpc:RPC_2254 auxin efflux carrier; auxin efflux carrier 3763292..3764218 Rhodopseudomonas palustris BisA53 4361055 YP_782282.1 CDS RPE_3370 NC_008435.1 3764224 3764907 R PFAM: cyclic nucleotide-binding; KEGG: bja:bll2244 probable cAMP-regulatory protein; cyclic nucleotide-binding protein complement(3764224..3764907) Rhodopseudomonas palustris BisA53 4361056 YP_782283.1 CDS RPE_3371 NC_008435.1 3765452 3766135 R PFAM: cyclic nucleotide-binding; KEGG: bja:bll2244 probable cAMP-regulatory protein; cyclic nucleotide-binding protein complement(3765452..3766135) Rhodopseudomonas palustris BisA53 4361057 YP_782284.1 CDS RPE_3372 NC_008435.1 3766411 3767181 R PFAM: peptidase M15D, vanX D-ala-D-ala dipeptidase; peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: rpd:RPD_3026 peptidase M15D, VanX D-ala-D-ala dipeptidase; peptidase M15D, vanX D-ala-D-ala dipeptidase complement(3766411..3767181) Rhodopseudomonas palustris BisA53 4361058 YP_782285.1 CDS pyrB NC_008435.1 3767286 3768239 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 3767286..3768239 Rhodopseudomonas palustris BisA53 4361059 YP_782286.1 CDS RPE_3374 NC_008435.1 3768244 3769545 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 3768244..3769545 Rhodopseudomonas palustris BisA53 4361060 YP_782287.1 CDS RPE_3375 NC_008435.1 3769583 3770176 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 3769583..3770176 Rhodopseudomonas palustris BisA53 4361061 YP_782288.1 CDS RPE_3376 NC_008435.1 3770194 3770703 R hypothetical protein complement(3770194..3770703) Rhodopseudomonas palustris BisA53 4361062 YP_782289.1 CDS RPE_3377 NC_008435.1 3771022 3772140 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: rpc:RPC_2244 DNA processing protein DprA, putative; DNA processing protein DprA 3771022..3772140 Rhodopseudomonas palustris BisA53 4361063 YP_782290.1 CDS RPE_3378 NC_008435.1 3772143 3772394 R KEGG: rpc:RPC_2240 hypothetical protein; hypothetical protein complement(3772143..3772394) Rhodopseudomonas palustris BisA53 4361064 YP_782291.1 CDS RPE_3379 NC_008435.1 3772566 3775400 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 3772566..3775400 Rhodopseudomonas palustris BisA53 4361065 YP_782292.1 CDS RPE_3380 NC_008435.1 3776486 3778894 D KEGG: rpc:RPC_2238 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; ribonuclease R 3776486..3778894 Rhodopseudomonas palustris BisA53 4361066 YP_782293.1 CDS RPE_3381 NC_008435.1 3778917 3779366 D PFAM: protein of unknown function DUF983; KEGG: rpc:RPC_2237 protein of unknown function DUF983; hypothetical protein 3778917..3779366 Rhodopseudomonas palustris BisA53 4361067 YP_782294.1 CDS RPE_3382 NC_008435.1 3779400 3780143 D PFAM: NUDIX hydrolase; KEGG: rpa:RPA3127 NUDIX hydrolase; NUDIX hydrolase 3779400..3780143 Rhodopseudomonas palustris BisA53 4361068 YP_782295.1 CDS rpmG NC_008435.1 3780261 3780428 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 3780261..3780428 Rhodopseudomonas palustris BisA53 4361069 YP_782296.1 CDS RPE_3384 NC_008435.1 3780961 3781698 D TIGRFAM: methyltransferase FkbM family; KEGG: nmu:Nmul_A1173 methyltransferase FkbM; FkbM family methyltransferase 3780961..3781698 Rhodopseudomonas palustris BisA53 4361070 YP_782297.1 CDS pleD NC_008435.1 3783389 3784762 R involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; response regulator PleD complement(3783389..3784762) Rhodopseudomonas palustris BisA53 4361071 YP_782298.1 CDS RPE_3386 NC_008435.1 3784772 3785137 R PFAM: response regulator receiver; KEGG: rpc:RPC_3309 response regulator receiver domain protein (CheY-like); response regulator receiver protein complement(3784772..3785137) Rhodopseudomonas palustris BisA53 4361072 YP_782299.1 CDS RPE_3387 NC_008435.1 3785265 3785564 D KEGG: rpc:RPC_3310 hypothetical protein; hypothetical protein 3785265..3785564 Rhodopseudomonas palustris BisA53 4361073 YP_782300.1 CDS RPE_3388 NC_008435.1 3785561 3786859 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 3785561..3786859 Rhodopseudomonas palustris BisA53 4361074 YP_782301.1 CDS RPE_3389 NC_008435.1 3787043 3787327 D hypothetical protein 3787043..3787327 Rhodopseudomonas palustris BisA53 4361075 YP_782302.1 CDS RPE_3390 NC_008435.1 3787399 3788268 R KEGG: rpc:RPC_3312 hypothetical protein; hypothetical protein complement(3787399..3788268) Rhodopseudomonas palustris BisA53 4361076 YP_782303.1 CDS RPE_3391 NC_008435.1 3788446 3788913 D PFAM: Endoribonuclease L-PSP; KEGG: nha:Nham_2448 endoribonuclease L-PSP; endoribonuclease L-PSP 3788446..3788913 Rhodopseudomonas palustris BisA53 4361077 YP_782304.1 CDS RPE_3392 NC_008435.1 3788916 3789671 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: rpc:RPC_3314 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 3788916..3789671 Rhodopseudomonas palustris BisA53 4361078 YP_782305.1 CDS RPE_3393 NC_008435.1 3789759 3790988 D PFAM: protein of unknown function DUF482; KEGG: rpc:RPC_3315 protein of unknown function DUF482; hypothetical protein 3789759..3790988 Rhodopseudomonas palustris BisA53 4361079 YP_782306.1 CDS RPE_3394 NC_008435.1 3791040 3791468 D PFAM: histidine triad (HIT) protein; KEGG: rpc:RPC_3316 histidine triad (HIT) protein; histidine triad (HIT) protein 3791040..3791468 Rhodopseudomonas palustris BisA53 4361080 YP_782307.1 CDS RPE_3395 NC_008435.1 3791736 3792200 R PFAM: protein of unknown function UPF0066; KEGG: rpd:RPD_3047 protein of unknown function UPF0066; hypothetical protein complement(3791736..3792200) Rhodopseudomonas palustris BisA53 4361081 YP_782308.1 CDS RPE_3396 NC_008435.1 3792255 3792599 R PFAM: branched-chain amino acid transport; KEGG: rpc:RPC_3318 hypothetical protein; hypothetical protein complement(3792255..3792599) Rhodopseudomonas palustris BisA53 4361082 YP_782309.1 CDS RPE_3397 NC_008435.1 3792596 3793333 R PFAM: AzlC family protein; KEGG: rpc:RPC_3319 AzlC-like; AzlC family protein complement(3792596..3793333) Rhodopseudomonas palustris BisA53 4361083 YP_782310.1 CDS RPE_3398 NC_008435.1 3793490 3793849 D PFAM: type IV pilus assembly PilZ; KEGG: rpb:RPB_2400 hypothetical protein; type IV pilus assembly PilZ 3793490..3793849 Rhodopseudomonas palustris BisA53 4361084 YP_782311.1 CDS RPE_3399 NC_008435.1 3793856 3794884 R PFAM: Sporulation domain protein; Lytic transglycosylase, catalytic; KEGG: rpc:RPC_3321 lytic transglycosylase, catalytic; lytic transglycosylase complement(3793856..3794884) Rhodopseudomonas palustris BisA53 4361085 YP_782312.1 CDS RPE_3400 NC_008435.1 3795057 3796187 D catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 3795057..3796187 Rhodopseudomonas palustris BisA53 4361086 YP_782313.1 CDS bioD NC_008435.1 3796184 3796825 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 3796184..3796825 Rhodopseudomonas palustris BisA53 4361087 YP_782314.1 CDS RPE_3402 NC_008435.1 3796822 3798081 D catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 3796822..3798081 Rhodopseudomonas palustris BisA53 4361088 YP_782315.1 CDS RPE_3403 NC_008435.1 3798694 3800157 D KEGG: rpc:RPC_3323 hypothetical protein; hypothetical protein 3798694..3800157 Rhodopseudomonas palustris BisA53 4361089 YP_782316.1 CDS RPE_3404 NC_008435.1 3800409 3802823 R KEGG: rpb:RPB_2396 AAA_5 ATPase; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA complement(3800409..3802823) Rhodopseudomonas palustris BisA53 4361090 YP_782317.1 CDS RPE_3405 NC_008435.1 3803148 3803477 R PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: rpc:RPC_3325 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS complement(3803148..3803477) Rhodopseudomonas palustris BisA53 4361091 YP_782318.1 CDS RPE_3406 NC_008435.1 3804011 3805753 D KEGG: nwi:Nwi_1697 hypothetical protein; hypothetical protein 3804011..3805753 Rhodopseudomonas palustris BisA53 4361092 YP_782319.1 CDS RPE_3407 NC_008435.1 3806140 3807894 D PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Sporulation domain protein; KEGG: rpc:RPC_3328 serine-type D-Ala-D-Ala carboxypeptidase; Serine-type D-Ala-D-Ala carboxypeptidase 3806140..3807894 Rhodopseudomonas palustris BisA53 4361093 YP_782320.1 CDS RPE_3408 NC_008435.1 3808141 3808875 R PFAM: heat shock protein DnaJ domain protein; KEGG: rpc:RPC_3329 heat shock protein DnaJ-like; heat shock protein DnaJ domain-containing protein complement(3808141..3808875) Rhodopseudomonas palustris BisA53 4361094 YP_782321.1 CDS RPE_3409 NC_008435.1 3808933 3809685 R KEGG: rpd:RPD_3060 hypothetical protein; hypothetical protein complement(3808933..3809685) Rhodopseudomonas palustris BisA53 4361095 YP_782322.1 CDS RPE_3410 NC_008435.1 3809762 3810358 R TIGRFAM: mobile mystery protein B; PFAM: filamentation induced by cAMP protein Fic; KEGG: atc:AGR_pTi_bx97 hypothetical protein; mobile mystery protein B complement(3809762..3810358) Rhodopseudomonas palustris BisA53 4361096 YP_782323.1 CDS RPE_3411 NC_008435.1 3810355 3810816 R TIGRFAM: mobile mystery protein A; PFAM: helix-turn-helix domain protein; KEGG: atc:AGR_pTi_183 DNA-binding protein; XRE family transcriptional regulator complement(3810355..3810816) Rhodopseudomonas palustris BisA53 4361097 YP_782324.1 CDS RPE_3412 NC_008435.1 3810933 3811856 R KEGG: bja:bll5161 hypothetical protein; hypothetical protein complement(3810933..3811856) Rhodopseudomonas palustris BisA53 4361098 YP_782325.1 CDS panC NC_008435.1 3812016 3812888 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 3812016..3812888 Rhodopseudomonas palustris BisA53 4361099 YP_782326.1 CDS RPE_3414 NC_008435.1 3812893 3813333 R PFAM: Uncharacterised conserved protein UCP032025; KEGG: rpc:RPC_3333 uncharacterised conserved protein UCP032025; hypothetical protein complement(3812893..3813333) Rhodopseudomonas palustris BisA53 4361100 YP_782327.1 CDS RPE_3415 NC_008435.1 3813366 3814397 R KEGG: rpc:RPC_3334 hypothetical protein; hypothetical protein complement(3813366..3814397) Rhodopseudomonas palustris BisA53 4361101 YP_782328.1 CDS RPE_3416 NC_008435.1 3814543 3814734 R KEGG: rpd:RPD_3069 hypothetical protein; hypothetical protein complement(3814543..3814734) Rhodopseudomonas palustris BisA53 4361102 YP_782329.1 CDS RPE_3417 NC_008435.1 3814983 3815639 R PFAM: Glutathione S-transferase, N-terminal domain; KEGG: rpc:RPC_3336 glutathione S-transferase-like; glutathione S-transferase complement(3814983..3815639) Rhodopseudomonas palustris BisA53 4361103 YP_782330.1 CDS RPE_3418 NC_008435.1 3815750 3816031 D KEGG: rpd:RPD_3071 hypothetical protein; hypothetical protein 3815750..3816031 Rhodopseudomonas palustris BisA53 4361104 YP_782331.1 CDS RPE_3419 NC_008435.1 3816035 3816838 R PFAM: protein of unknown function DUF218; KEGG: rpc:RPC_3338 protein of unknown function DUF218; hypothetical protein complement(3816035..3816838) Rhodopseudomonas palustris BisA53 4361105 YP_782332.1 CDS RPE_3420 NC_008435.1 3816865 3817683 R PFAM: aldo/keto reductase; KEGG: rpc:RPC_3339 2,5-didehydrogluconate reductase; 2,5-didehydrogluconate reductase complement(3816865..3817683) Rhodopseudomonas palustris BisA53 4361106 YP_782333.1 CDS RPE_3421 NC_008435.1 3817729 3818058 R SMART: helix-turn-helix domain protein; KEGG: rpb:RPB_2380 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(3817729..3818058) Rhodopseudomonas palustris BisA53 4361107 YP_782334.1 CDS RPE_3422 NC_008435.1 3818104 3819525 R TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: rpc:RPC_3340 magnesium transporter; magnesium transporter complement(3818104..3819525) Rhodopseudomonas palustris BisA53 4361108 YP_782335.1 CDS RPE_3423 NC_008435.1 3819688 3820464 D PFAM: polysaccharide deacetylase; KEGG: rpc:RPC_3341 polysaccharide deacetylase; polysaccharide deacetylase 3819688..3820464 Rhodopseudomonas palustris BisA53 4361109 YP_782336.1 CDS RPE_3424 NC_008435.1 3820579 3821877 D PFAM: polysaccharide deacetylase; KEGG: rpc:RPC_3342 polysaccharide deacetylase; polysaccharide deacetylase 3820579..3821877 Rhodopseudomonas palustris BisA53 4361110 YP_782337.1 CDS RPE_3425 NC_008435.1 3821895 3822269 R KEGG: rpc:RPC_3343 hypothetical protein; hypothetical protein complement(3821895..3822269) Rhodopseudomonas palustris BisA53 4361111 YP_782338.1 CDS RPE_3426 NC_008435.1 3822479 3823090 R PFAM: protein of unknown function DUF1234; KEGG: rfr:Rfer_2404 protein of unknown function DUF1234; hypothetical protein complement(3822479..3823090) Rhodopseudomonas palustris BisA53 4361112 YP_782339.1 CDS RPE_3427 NC_008435.1 3823803 3824846 D KEGG: rfr:Rfer_2410 citrate lyase ligase; TIGRFAM: cytidyltransferase-related domain; citrate lyase ligase; PFAM: GCN5-related N-acetyltransferase; Citrate lyase ligase, C-terminal domain protein; citrate lyase ligase 3823803..3824846 Rhodopseudomonas palustris BisA53 4361113 YP_782340.1 CDS RPE_3428 NC_008435.1 3824966 3825259 D acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 3824966..3825259 Rhodopseudomonas palustris BisA53 4361114 YP_782341.1 CDS RPE_3429 NC_008435.1 3825256 3826128 D KEGG: rfr:Rfer_2408 citrate lyase, beta subunit; TIGRFAM: citrate lyase, beta subunit; PFAM: HpcH/HpaI aldolase; citrate lyase subunit beta 3825256..3826128 Rhodopseudomonas palustris BisA53 4361115 YP_782342.1 CDS RPE_3430 NC_008435.1 3826125 3827663 D KEGG: rfr:Rfer_2407 citrate lyase, alpha subunit; TIGRFAM: citrate lyase, alpha subunit; PFAM: Citrate lyase, alpha subunit; citrate lyase subunit alpha 3826125..3827663 Rhodopseudomonas palustris BisA53 4361116 YP_782343.1 CDS RPE_3431 NC_008435.1 3827668 3828213 D PFAM: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; KEGG: rfr:Rfer_2406 holo-citrate lyase synthase; Holo-ACP synthase 3827668..3828213 Rhodopseudomonas palustris BisA53 4361117 YP_782344.1 CDS RPE_3432 NC_008435.1 3828224 3829102 D PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: rfr:Rfer_2405 triphosphoribosyl-dephospho-CoA synthase; triphosphoribosyl-dephospho-CoA synthase 3828224..3829102 Rhodopseudomonas palustris BisA53 4361118 YP_782345.1 CDS RPE_3433 NC_008435.1 3829228 3829470 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: rpc:RPC_3345 prevent-host-death protein; prevent-host-death family protein 3829228..3829470 Rhodopseudomonas palustris BisA53 4361119 YP_782346.1 CDS RPE_3434 NC_008435.1 3829476 3829916 D PFAM: PilT protein domain protein; KEGG: rpd:RPD_3079 PilT protein-like; PilT domain-containing protein 3829476..3829916 Rhodopseudomonas palustris BisA53 4361120 YP_782347.1 CDS RPE_3435 NC_008435.1 3830140 3830388 R PFAM: surface presentation of antigens (SPOA) protein; KEGG: rpc:RPC_3347 surface presentation of antigens (SpoA) protein; hypothetical protein complement(3830140..3830388) Rhodopseudomonas palustris BisA53 4361122 YP_782348.1 CDS lipB NC_008435.1 3830446 3831150 D lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 3830446..3831150 Rhodopseudomonas palustris BisA53 4361123 YP_782349.1 CDS RPE_3437 NC_008435.1 3831170 3831460 R catalyzes the hydrolysis of acylphosphate; acylphosphatase complement(3831170..3831460) Rhodopseudomonas palustris BisA53 4361124 YP_782350.1 CDS RPE_3438 NC_008435.1 3831466 3832335 R KEGG: rpd:RPD_3092 hypothetical protein; hypothetical protein complement(3831466..3832335) Rhodopseudomonas palustris BisA53 4361125 YP_782351.1 CDS RPE_3439 NC_008435.1 3832339 3834351 R PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: rpc:RPC_3352 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase subunit L complement(3832339..3834351) Rhodopseudomonas palustris BisA53 4361126 YP_782352.1 CDS RPE_3440 NC_008435.1 3834721 3835296 R KEGG: rpc:RPC_3354 hypothetical protein; hypothetical protein complement(3834721..3835296) Rhodopseudomonas palustris BisA53 4361127 YP_782353.1 CDS RPE_3441 NC_008435.1 3835698 3836099 R KEGG: rpc:RPC_3355 hypothetical protein; hypothetical protein complement(3835698..3836099) Rhodopseudomonas palustris BisA53 4361128 YP_782354.1 CDS RPE_3442 NC_008435.1 3836219 3837670 D PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: rpc:RPC_3356 deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photolyase 3836219..3837670 Rhodopseudomonas palustris BisA53 4361129 YP_782355.1 CDS RPE_3443 NC_008435.1 3837766 3838104 D KEGG: rpd:RPD_3099 hypothetical protein; hypothetical protein 3837766..3838104 Rhodopseudomonas palustris BisA53 4361130 YP_782356.1 CDS RPE_3444 NC_008435.1 3838184 3839068 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: rpc:RPC_3358 protein of unknown function DUF6, transmembrane; hypothetical protein complement(3838184..3839068) Rhodopseudomonas palustris BisA53 4361131 YP_782357.1 CDS RPE_3445 NC_008435.1 3839416 3840507 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_3360 diguanylate cyclase (GGDEF domain); diguanylate cyclase 3839416..3840507 Rhodopseudomonas palustris BisA53 4361132 YP_782358.1 CDS RPE_3446 NC_008435.1 3840535 3841029 R KEGG: rpa:RPA3183 hypothetical protein; hypothetical protein complement(3840535..3841029) Rhodopseudomonas palustris BisA53 4361133 YP_782359.1 CDS RPE_3447 NC_008435.1 3841360 3841653 D hypothetical protein 3841360..3841653 Rhodopseudomonas palustris BisA53 4361135 YP_782360.1 CDS RPE_3448 NC_008435.1 3841622 3842986 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: bja:blr4803 two-component hybrid sensor and regulator; periplasmic sensor signal transduction histidine kinase complement(3841622..3842986) Rhodopseudomonas palustris BisA53 4361136 YP_782361.1 CDS RPE_3449 NC_008435.1 3842983 3843657 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bja:blr4802 two-component response regulator; two component transcriptional regulator complement(3842983..3843657) Rhodopseudomonas palustris BisA53 4361137 YP_782362.1 CDS RPE_3452 NC_008435.1 3844976 3845845 R PFAM: metallophosphoesterase; KEGG: bja:bll8164 hypothetical protein; metallophosphoesterase complement(3844976..3845845) Rhodopseudomonas palustris BisA53 4361140 YP_782363.1 CDS RPE_3453 NC_008435.1 3846085 3846744 R KEGG: bja:bll8165 putative alkaline phosphatase protein; putative alkaline phosphatase protein complement(3846085..3846744) Rhodopseudomonas palustris BisA53 4361141 YP_782364.1 CDS RPE_3454 NC_008435.1 3846755 3847330 R KEGG: bja:bll8166 probable phospholipid N-methyltransferase; putative phospholipid N-methyltransferase complement(3846755..3847330) Rhodopseudomonas palustris BisA53 4361142 YP_782365.1 CDS RPE_3455 NC_008435.1 3847658 3848008 D PFAM: response regulator receiver; KEGG: mlo:mll5373 two-component response regulator; response regulator receiver protein 3847658..3848008 Rhodopseudomonas palustris BisA53 4361143 YP_782366.1 CDS RPE_3456 NC_008435.1 3848169 3848546 R KEGG: rpa:RPA1360 hypothetical protein; hypothetical protein complement(3848169..3848546) Rhodopseudomonas palustris BisA53 4361144 YP_782367.1 CDS RPE_3457 NC_008435.1 3848566 3849354 R PFAM: Lytic transglycosylase, catalytic; KEGG: rpc:RPC_2909 lytic transglycosylase, catalytic; lytic transglycosylase complement(3848566..3849354) Rhodopseudomonas palustris BisA53 4361145 YP_782368.1 CDS RPE_3458 NC_008435.1 3849355 3849846 R KEGG: rpc:RPC_2910 hypothetical protein; hypothetical protein complement(3849355..3849846) Rhodopseudomonas palustris BisA53 4361146 YP_782369.1 CDS RPE_3459 NC_008435.1 3849895 3850437 R KEGG: rpc:RPC_2912 hypothetical protein; hypothetical protein complement(3849895..3850437) Rhodopseudomonas palustris BisA53 4361147 YP_782370.1 CDS RPE_3460 NC_008435.1 3850448 3851509 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rpc:RPC_2913 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(3850448..3851509) Rhodopseudomonas palustris BisA53 4361148 YP_782371.1 CDS RPE_3461 NC_008435.1 3851506 3852105 R KEGG: rpc:RPC_2914 hypothetical protein; hypothetical protein complement(3851506..3852105) Rhodopseudomonas palustris BisA53 4361149 YP_782372.1 CDS RPE_3462 NC_008435.1 3852108 3853973 R KEGG: rpc:RPC_2915 hypothetical protein; hypothetical protein complement(3852108..3853973) Rhodopseudomonas palustris BisA53 4361150 YP_782373.1 CDS RPE_3463 NC_008435.1 3854010 3854765 R KEGG: rpb:RPB_2223 hypothetical protein; hypothetical protein complement(3854010..3854765) Rhodopseudomonas palustris BisA53 4361151 YP_782374.1 CDS RPE_3464 NC_008435.1 3854762 3855259 R KEGG: rpc:RPC_2918 hypothetical protein; hypothetical protein complement(3854762..3855259) Rhodopseudomonas palustris BisA53 4361152 YP_782375.1 CDS RPE_3465 NC_008435.1 3855267 3855671 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpc:RPC_2919 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(3855267..3855671) Rhodopseudomonas palustris BisA53 4361153 YP_782376.1 CDS RPE_3466 NC_008435.1 3855677 3857740 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: rpc:RPC_2920 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(3855677..3857740) Rhodopseudomonas palustris BisA53 4361154 YP_782377.1 CDS RPE_3467 NC_008435.1 3857740 3859530 R PFAM: Polypeptide-transport-associated domain protein, ShlB-type; KEGG: rpc:RPC_2921 hemolysin activation/secretion protein; polypeptide-transport-associated domain-containing protein complement(3857740..3859530) Rhodopseudomonas palustris BisA53 4361155 YP_782378.1 CDS RPE_3468 NC_008435.1 3859685 3860593 R PFAM: FecR protein; KEGG: rpc:RPC_2904 putative FecR; putative FecR protein complement(3859685..3860593) Rhodopseudomonas palustris BisA53 4361156 YP_782379.1 CDS RPE_3469 NC_008435.1 3860684 3860947 D hypothetical protein 3860684..3860947 Rhodopseudomonas palustris BisA53 4361157 YP_782380.1 CDS RPE_3470 NC_008435.1 3861033 3861575 R PFAM: sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rpc:RPC_2905 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 factor complement(3861033..3861575) Rhodopseudomonas palustris BisA53 4361158 YP_782381.1 CDS RPE_3471 NC_008435.1 3861705 3862448 R TIGRFAM: TonB family protein; KEGG: rpc:RPC_2906 TonB-like; TonB family protein complement(3861705..3862448) Rhodopseudomonas palustris BisA53 4361159 YP_782382.1 CDS RPE_3472 NC_008435.1 3862445 3863122 R PFAM: Secretin/TonB, short N-terminal domain; KEGG: rpc:RPC_2907 secretin/TonB-like protein; secretin/TonB short N-terminal domain-containing protein complement(3862445..3863122) Rhodopseudomonas palustris BisA53 4361160 YP_782383.1 CDS RPE_3473 NC_008435.1 3863399 3863875 R KEGG: rpa:RPA1344 hypothetical protein; hypothetical protein complement(3863399..3863875) Rhodopseudomonas palustris BisA53 4361161 YP_782384.1 CDS RPE_3474 NC_008435.1 3863921 3864679 R KEGG: rpb:RPB_2209 hypothetical protein; hypothetical protein complement(3863921..3864679) Rhodopseudomonas palustris BisA53 4361162 YP_782385.1 CDS RPE_3475 NC_008435.1 3864865 3878106 R TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: bur:Bcep18194_B1068 haemagglutinin-like; filamentous hemagglutinin outer membrane protein complement(3864865..3878106) Rhodopseudomonas palustris BisA53 4361163 YP_782386.1 CDS RPE_3476 NC_008435.1 3878232 3879224 R PFAM: FecR protein; KEGG: rpb:RPB_2213 putative FecR; putative FecR protein complement(3878232..3879224) Rhodopseudomonas palustris BisA53 4361164 YP_782387.1 CDS RPE_3477 NC_008435.1 3879327 3879842 R PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: rpb:RPB_2205 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 factor complement(3879327..3879842) Rhodopseudomonas palustris BisA53 4361165 YP_782388.1 CDS RPE_3478 NC_008435.1 3879839 3880540 R KEGG: rpb:RPB_3129 secretin/TonB, short-like protein; secretin/TonB, short-like protein complement(3879839..3880540) Rhodopseudomonas palustris BisA53 4361166 YP_782389.1 CDS RPE_3479 NC_008435.1 3880938 3884117 R PFAM: acriflavin resistance protein; KEGG: rpc:RPC_2796 acriflavin resistance protein; acriflavin resistance protein complement(3880938..3884117) Rhodopseudomonas palustris BisA53 4361167 YP_782390.1 CDS RPE_3480 NC_008435.1 3884131 3885234 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rpc:RPC_2797 secretion protein HlyD; RND family efflux transporter MFP subunit complement(3884131..3885234) Rhodopseudomonas palustris BisA53 4361168 YP_782391.1 CDS RPE_3481 NC_008435.1 3885386 3886090 D PFAM: regulatory protein, TetR; KEGG: rpc:RPC_2798 transcriptional regulator, TetR family; TetR family transcriptional regulator 3885386..3886090 Rhodopseudomonas palustris BisA53 4361169 YP_782392.1 CDS RPE_3482 NC_008435.1 3886285 3886782 D KEGG: rpb:RPB_2247 hypothetical protein; hypothetical protein 3886285..3886782 Rhodopseudomonas palustris BisA53 4361170 YP_782393.1 CDS RPE_3483 NC_008435.1 3887057 3889240 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpd:RPD_2482 TonB-dependent receptor; TonB-dependent receptor complement(3887057..3889240) Rhodopseudomonas palustris BisA53 4361171 YP_782394.1 CDS RPE_3484 NC_008435.1 3889323 3889721 D hypothetical protein 3889323..3889721 Rhodopseudomonas palustris BisA53 4361172 YP_782395.1 CDS RPE_3485 NC_008435.1 3889827 3890330 D PFAM: protein of unknown function UPF0066; KEGG: rpd:RPD_2481 protein of unknown function UPF0066; hypothetical protein 3889827..3890330 Rhodopseudomonas palustris BisA53 4361173 YP_782396.1 CDS RPE_3486 NC_008435.1 3890327 3891379 D PFAM: periplasmic binding protein; KEGG: rpd:RPD_2480 periplasmic binding protein; periplasmic binding protein 3890327..3891379 Rhodopseudomonas palustris BisA53 4361174 YP_782397.1 CDS RPE_3487 NC_008435.1 3891408 3892403 D PFAM: transport system permease protein; ABC-3 protein; KEGG: rpd:RPD_2479 transport system permease protein; transport system permease 3891408..3892403 Rhodopseudomonas palustris BisA53 4361175 YP_782398.1 CDS RPE_3488 NC_008435.1 3892400 3893185 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_2478 ABC transporter related; ABC transporter-like protein 3892400..3893185 Rhodopseudomonas palustris BisA53 4361176 YP_782399.1 CDS RPE_3489 NC_008435.1 3893203 3893826 D KEGG: rpd:RPD_2477 hypothetical protein; hypothetical protein 3893203..3893826 Rhodopseudomonas palustris BisA53 4361177 YP_782400.1 CDS RPE_3490 NC_008435.1 3893959 3894750 D TIGRFAM: Molybdenum-pterin binding; PFAM: regulatory protein, LysR; TOBE domain protein; KEGG: rpd:RPD_2476 ModE molybdate transport repressor domain; ModE family transcriptional regulator 3893959..3894750 Rhodopseudomonas palustris BisA53 4361178 YP_782401.1 CDS RPE_3491 NC_008435.1 3895740 3897119 D KEGG: aba:Acid345_1668 hypothetical protein; hypothetical protein 3895740..3897119 Rhodopseudomonas palustris BisA53 4361179 YP_782402.1 CDS RPE_3492 NC_008435.1 3897220 3898818 D PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: rpc:RPC_4239 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/subunit 3897220..3898818 Rhodopseudomonas palustris BisA53 4361180 YP_782403.1 CDS RPE_3493 NC_008435.1 3899131 3900297 D KEGG: ade:Adeh_2645 cellulose biosynthesis (CelD)-like protein; cellulose biosynthesis protein CelD 3899131..3900297 Rhodopseudomonas palustris BisA53 4361181 YP_782404.1 CDS RPE_3494 NC_008435.1 3900458 3901300 R TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: ret:RHE_CH01358 putative teichoic acid biosynthesis, UDP-N-acetyl-D-mannosaminuronic acid transferase protein; WecB/TagA/CpsF family glycosyl transferase complement(3900458..3901300) Rhodopseudomonas palustris BisA53 4361182 YP_782405.1 CDS RPE_3495 NC_008435.1 3901297 3902268 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: sme:SMb20458 putative dTDP-glucose 4,6-dehydratase protein; NAD-dependent epimerase/dehydratase complement(3901297..3902268) Rhodopseudomonas palustris BisA53 4361183 YP_782406.1 CDS RPE_3496 NC_008435.1 3902409 3904022 D PFAM: polysaccharide export protein; KEGG: sme:SMb21073 putative OMA family outer membrane saccharide export protein, similar to ExoF; polysaccharide export protein 3902409..3904022 Rhodopseudomonas palustris BisA53 4361184 YP_782407.1 CDS RPE_3497 NC_008435.1 3904064 3905515 D KEGG: rpc:RPC_4235 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 3904064..3905515 Rhodopseudomonas palustris BisA53 4361185 YP_782408.1 CDS RPE_3498 NC_008435.1 3905549 3907249 D PFAM: lipopolysaccharide biosynthesis; KEGG: ccr:CC0164 hypothetical protein; lipopolysaccharide biosynthesis protein 3905549..3907249 Rhodopseudomonas palustris BisA53 4361186 YP_782409.1 CDS RPE_3499 NC_008435.1 3907301 3908542 D KEGG: aba:Acid345_3798 hypothetical protein; hypothetical protein 3907301..3908542 Rhodopseudomonas palustris BisA53 4361187 YP_782410.1 CDS RPE_3500 NC_008435.1 3908517 3909050 D hypothetical protein 3908517..3909050 Rhodopseudomonas palustris BisA53 4361188 YP_782411.1 CDS RPE_3501 NC_008435.1 3909228 3910595 D KEGG: dge:Dgeo_2667 O-antigen polymerase; O-antigen polymerase 3909228..3910595 Rhodopseudomonas palustris BisA53 4361189 YP_782412.1 CDS RPE_3502 NC_008435.1 3910767 3912017 D PFAM: acyltransferase 3; KEGG: bur:Bcep18194_B2871 acyltransferase 3; acyltransferase 3 3910767..3912017 Rhodopseudomonas palustris BisA53 4361190 YP_782413.1 CDS RPE_3503 NC_008435.1 3912609 3913625 D PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; KEGG: aba:Acid345_0895 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3912609..3913625 Rhodopseudomonas palustris BisA53 4361191 YP_782414.1 CDS RPE_3504 NC_008435.1 3913656 3915071 D PFAM: sugar transferase; KEGG: ret:RHE_CH01359 putative sugar transferase involved in lipopolysaccharide synthesis, UDP-galactose-lipid carriertransferase protein; undecaprenyl-phosphate galactose phosphotransferase 3913656..3915071 Rhodopseudomonas palustris BisA53 4361192 YP_782415.1 CDS RPE_3505 NC_008435.1 3915110 3916471 D PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: rpc:RPC_4156 UDP-glucose 6-dehydrogenase; UDP-glucose 6-dehydrogenase 3915110..3916471 Rhodopseudomonas palustris BisA53 4361193 YP_782416.1 CDS RPE_3506 NC_008435.1 3916643 3917353 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3916643..3917353 Rhodopseudomonas palustris BisA53 4361194 YP_782417.1 CDS RPE_3507 NC_008435.1 3917379 3918134 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3917379..3918134 Rhodopseudomonas palustris BisA53 4361195 YP_782418.1 CDS RPE_3508 NC_008435.1 3918131 3919084 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rru:Rru_A1486 UDP-glucose 4-epimerase; NAD-dependent epimerase/dehydratase 3918131..3919084 Rhodopseudomonas palustris BisA53 4361196 YP_782419.1 CDS RPE_3509 NC_008435.1 3919081 3920355 D PFAM: glycosyl transferase, group 1; KEGG: hma:rrnAC1017 LPS glycosyltransferase; group 1 glycosyl transferase 3919081..3920355 Rhodopseudomonas palustris BisA53 4361197 YP_782420.1 CDS RPE_3510 NC_008435.1 3920352 3921164 D PFAM: glycosyl transferase, family 2; KEGG: ade:Adeh_3050 glycosyl transferase, family 2; glycosyl transferase family protein 3920352..3921164 Rhodopseudomonas palustris BisA53 4361198 YP_782421.1 CDS RPE_3511 NC_008435.1 3922120 3923994 D KEGG: nha:Nham_3026 type I secretion system ATPase, PrtD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 3922120..3923994 Rhodopseudomonas palustris BisA53 4361199 YP_782422.1 CDS RPE_3512 NC_008435.1 3923991 3925292 D TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: nha:Nham_3025 type I secretion membrane fusion protein, HlyD; HlyD family type I secretion membrane fusion protein 3923991..3925292 Rhodopseudomonas palustris BisA53 4361200 YP_782423.1 CDS RPE_3513 NC_008435.1 3925692 3927146 D PFAM: Hemolysin-type calcium-binding region; KEGG: rpb:RPB_0805 glycerophosphoryl diester phosphodiesterase; hemolysin-type calcium-binding protein 3925692..3927146 Rhodopseudomonas palustris BisA53 4361201 YP_782424.1 CDS RPE_3514 NC_008435.1 3927415 3928221 R PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: nha:Nham_3000 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(3927415..3928221) Rhodopseudomonas palustris BisA53 4361202 YP_782425.1 CDS RPE_3515 NC_008435.1 3928401 3928994 R response regulator receiver protein complement(3928401..3928994) Rhodopseudomonas palustris BisA53 4361203 YP_782426.1 CDS RPE_3516 NC_008435.1 3930329 3931915 R PFAM: transposase IS66; KEGG: mag:amb3325 transposase and inactivated derivative; transposase IS66 complement(3930329..3931915) Rhodopseudomonas palustris BisA53 4361204 YP_782427.1 CDS RPE_3517 NC_008435.1 3931989 3932336 R PFAM: IS66 Orf2 family protein; KEGG: mag:amb0402 transposase and inactivated derivative; IS66 Orf2 family protein complement(3931989..3932336) Rhodopseudomonas palustris BisA53 4361205 YP_782428.1 CDS RPE_3518 NC_008435.1 3932333 3932731 R PFAM: transposase IS3/IS911 family protein; KEGG: bja:blr0034 putative transposase; transposase IS3/IS911 family protein complement(3932333..3932731) Rhodopseudomonas palustris BisA53 4361206 YP_782429.1 CDS RPE_3519 NC_008435.1 3933025 3933354 R hypothetical protein complement(3933025..3933354) Rhodopseudomonas palustris BisA53 4361207 YP_782430.1 CDS RPE_3520 NC_008435.1 3933574 3933921 D KEGG: rpc:RPC_3376 hypothetical protein; hypothetical protein 3933574..3933921 Rhodopseudomonas palustris BisA53 4361208 YP_782431.1 CDS RPE_3521 NC_008435.1 3933946 3935637 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_3378 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3933946..3935637) Rhodopseudomonas palustris BisA53 4361209 YP_782432.1 CDS RPE_3522 NC_008435.1 3935978 3937675 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: rpc:RPC_3380 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3935978..3937675) Rhodopseudomonas palustris BisA53 4361210 YP_782433.1 CDS RPE_3523 NC_008435.1 3938388 3939374 D SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: rpa:RPA2404 probable transcriptional regulator, AraC family; AraC family transcriptional regulator 3938388..3939374 Rhodopseudomonas palustris BisA53 4361211 YP_782434.1 CDS RPE_3524 NC_008435.1 3939409 3942093 R KEGG: rpc:RPC_3384 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase complement(3939409..3942093) Rhodopseudomonas palustris BisA53 4361212 YP_782435.1 CDS RPE_3525 NC_008435.1 3942197 3944377 R PFAM: Pyrrolo-quinoline quinone; KEGG: rpb:RPB_2355 pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone complement(3942197..3944377) Rhodopseudomonas palustris BisA53 4361213 YP_782436.1 CDS RPE_3526 NC_008435.1 3944527 3945327 R PFAM: NUDIX hydrolase; KEGG: rpd:RPD_3111 NUDIX hydrolase; NUDIX hydrolase complement(3944527..3945327) Rhodopseudomonas palustris BisA53 4361214 YP_782437.1 CDS RPE_3527 NC_008435.1 3945499 3946449 R PFAM: dihydrodipicolinate synthetase; KEGG: rpc:RPC_3385 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase complement(3945499..3946449) Rhodopseudomonas palustris BisA53 4361215 YP_782438.1 CDS RPE_3528 NC_008435.1 3946719 3947579 R PFAM: MaoC domain protein dehydratase; KEGG: rpb:RPB_2352 MaoC-like dehydratase; dehydratase complement(3946719..3947579) Rhodopseudomonas palustris BisA53 4361216 YP_782439.1 CDS RPE_3529 NC_008435.1 3947820 3951308 R Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase complement(3947820..3951308) Rhodopseudomonas palustris BisA53 4361217 YP_782440.1 CDS RPE_3530 NC_008435.1 3951649 3952050 D KEGG: rpc:RPC_3388 hypothetical protein; hypothetical protein 3951649..3952050 Rhodopseudomonas palustris BisA53 4361218 YP_782441.1 CDS RPE_3531 NC_008435.1 3952271 3952534 D hypothetical protein 3952271..3952534 Rhodopseudomonas palustris BisA53 4361219 YP_782442.1 CDS RPE_3532 NC_008435.1 3952600 3953409 R PFAM: protein of unknown function DUF1295; KEGG: rpd:RPD_3119 protein of unknown function DUF1295; hypothetical protein complement(3952600..3953409) Rhodopseudomonas palustris BisA53 4361220 YP_782443.1 CDS RPE_3533 NC_008435.1 3953525 3954073 R KEGG: rpd:RPD_3120 hypothetical protein; hypothetical protein complement(3953525..3954073) Rhodopseudomonas palustris BisA53 4361221 YP_782444.1 CDS RPE_3534 NC_008435.1 3954403 3954687 D KEGG: rpa:RPA3197 hypothetical protein; hypothetical protein 3954403..3954687 Rhodopseudomonas palustris BisA53 4361222 YP_782445.1 CDS RPE_3535 NC_008435.1 3954814 3956955 R PFAM: DNA/RNA non-specific endonuclease; Peptidase S7, flavivirus helicase (NS3); KEGG: mac:MA3330 hypothetical protein; DNA/RNA non-specific endonuclease complement(3954814..3956955) Rhodopseudomonas palustris BisA53 4361223 YP_782446.1 CDS RPE_3536 NC_008435.1 3957489 3958730 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: rru:Rru_A2643 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 3957489..3958730 Rhodopseudomonas palustris BisA53 4361224 YP_782447.1 CDS RPE_3537 NC_008435.1 3958898 3959128 D KEGG: cvi:CV2871 probable hemagglutinin; hypothetical protein 3958898..3959128 Rhodopseudomonas palustris BisA53 4361225 YP_782448.1 CDS RPE_3538 NC_008435.1 3959121 3959459 D hypothetical protein 3959121..3959459 Rhodopseudomonas palustris BisA53 4361226 YP_782449.1 CDS RPE_3539 NC_008435.1 3959695 3960126 D hypothetical protein 3959695..3960126 Rhodopseudomonas palustris BisA53 4361227 YP_782450.1 CDS RPE_3540 NC_008435.1 3960260 3960535 R KEGG: rpc:RPC_3396 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic complement(3960260..3960535) Rhodopseudomonas palustris BisA53 4361228 YP_782451.1 CDS RPE_3541 NC_008435.1 3960558 3962090 R PFAM: carboxyl transferase; KEGG: rpc:RPC_3397 carboxyl transferase; carboxyl transferase complement(3960558..3962090) Rhodopseudomonas palustris BisA53 4361229 YP_782452.1 CDS RPE_3542 NC_008435.1 3962410 3963228 R PFAM: penicillin-binding protein, transpeptidase; KEGG: rpc:RPC_3398 beta-lactamase; Beta-lactamase complement(3962410..3963228) Rhodopseudomonas palustris BisA53 4361230 YP_782453.1 CDS RPE_3543 NC_008435.1 3963466 3963732 R KEGG: rpc:RPC_3399 type III secretion protein; type III secretion protein complement(3963466..3963732) Rhodopseudomonas palustris BisA53 4361231 YP_782454.1 CDS RPE_3544 NC_008435.1 3963729 3965465 R KEGG: rpc:RPC_3400 hypothetical protein; hypothetical protein complement(3963729..3965465) Rhodopseudomonas palustris BisA53 4361232 YP_782455.1 CDS RPE_3545 NC_008435.1 3965523 3966302 R PFAM: ATP12 ATPase; KEGG: rpc:RPC_3401 ATP12 ATPase; ATP12 ATPase complement(3965523..3966302) Rhodopseudomonas palustris BisA53 4361233 YP_782456.1 CDS RPE_3546 NC_008435.1 3966315 3966767 R KEGG: rpc:RPC_3402 hypothetical protein; hypothetical protein complement(3966315..3966767) Rhodopseudomonas palustris BisA53 4361234 YP_782457.1 CDS RPE_3547 NC_008435.1 3966814 3968190 R TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rpb:RPB_2335 pseudouridine synthase, RluD; RluA family pseudouridine synthase complement(3966814..3968190) Rhodopseudomonas palustris BisA53 4361235 YP_782458.1 CDS RPE_3548 NC_008435.1 3968910 3970763 D KEGG: gsu:GSU0552 hypothetical protein; hypothetical protein 3968910..3970763 Rhodopseudomonas palustris BisA53 4361236 YP_782459.1 CDS RPE_3549 NC_008435.1 3970933 3971157 D KEGG: rpd:RPD_3154 nitroreductase; nitroreductase 3970933..3971157 Rhodopseudomonas palustris BisA53 4361237 YP_782460.1 CDS RPE_3550 NC_008435.1 3972012 3972689 D PFAM: nitroreductase; KEGG: rpd:RPD_3154 nitroreductase; nitroreductase 3972012..3972689 Rhodopseudomonas palustris BisA53 4361238 YP_782461.1 CDS RPE_3551 NC_008435.1 3972706 3973314 R PFAM: BLUF domain protein; KEGG: rpc:RPC_3406 BLUF; BLUF domain-containing protein complement(3972706..3973314) Rhodopseudomonas palustris BisA53 4361239 YP_782462.1 CDS RPE_3552 NC_008435.1 3973729 3974367 R KEGG: rpc:RPC_3407 hypothetical protein; hypothetical protein complement(3973729..3974367) Rhodopseudomonas palustris BisA53 4361240 YP_782463.1 CDS RPE_3553 NC_008435.1 3974383 3974802 R PFAM: protein of unknown function UPF0047; KEGG: rpa:RPA3218 hypothetical protein; hypothetical protein complement(3974383..3974802) Rhodopseudomonas palustris BisA53 4361241 YP_782464.1 CDS RPE_3554 NC_008435.1 3975001 3976083 R PFAM: Choloylglycine hydrolase; KEGG: rpc:RPC_3412 choloylglycine hydrolase; choloylglycine hydrolase complement(3975001..3976083) Rhodopseudomonas palustris BisA53 4361242 YP_782465.1 CDS RPE_3555 NC_008435.1 3976306 3977514 R PFAM: Extracellular ligand-binding receptor; KEGG: bja:blr2988 hypothetical protein; extracellular ligand-binding receptor complement(3976306..3977514) Rhodopseudomonas palustris BisA53 4361243 YP_782466.1 CDS RPE_3556 NC_008435.1 3977929 3979257 R PFAM: magnesium chelatase, ChlI subunit; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpb:RPB_2324 AAA_5 ATPase; recombination factor protein RarA complement(3977929..3979257) Rhodopseudomonas palustris BisA53 4361244 YP_782467.1 CDS RPE_3557 NC_008435.1 3979490 3980884 R TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rpc:RPC_3417 peptidase S1C, Do; peptidase S1C, Do complement(3979490..3980884) Rhodopseudomonas palustris BisA53 4361245 YP_782468.1 CDS RPE_3558 NC_008435.1 3981096 3982109 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpc:RPC_3419 alcohol dehydrogenase GroES-like; NADPH:quinone reductase 3981096..3982109 Rhodopseudomonas palustris BisA53 4361246 YP_782469.1 CDS RPE_3559 NC_008435.1 3982148 3982612 R PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: rpc:RPC_3420 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein complement(3982148..3982612) Rhodopseudomonas palustris BisA53 4361247 YP_782470.1 CDS RPE_3560 NC_008435.1 3982636 3983430 R PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpa:RPA3224 putative short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(3982636..3983430) Rhodopseudomonas palustris BisA53 4361248 YP_782471.1 CDS rplQ NC_008435.1 3983565 3983975 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(3983565..3983975) Rhodopseudomonas palustris BisA53 4361249 YP_782472.1 CDS RPE_3562 NC_008435.1 3984118 3985137 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(3984118..3985137) Rhodopseudomonas palustris BisA53 4361250 YP_782473.1 CDS RPE_3563 NC_008435.1 3985243 3985632 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(3985243..3985632) Rhodopseudomonas palustris BisA53 4361251 YP_782474.1 CDS rpsM NC_008435.1 3985767 3986135 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(3985767..3986135) Rhodopseudomonas palustris BisA53 4361252 YP_782475.1 CDS adk NC_008435.1 3986313 3987383 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(3986313..3987383) Rhodopseudomonas palustris BisA53 4361253 YP_782476.1 CDS secY NC_008435.1 3987380 3988711 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(3987380..3988711) Rhodopseudomonas palustris BisA53 4361254 YP_782477.1 CDS rplO NC_008435.1 3988854 3989339 R late assembly protein; 50S ribosomal protein L15 complement(3988854..3989339) Rhodopseudomonas palustris BisA53 4361255 YP_782478.1 CDS rpmD NC_008435.1 3989352 3989546 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(3989352..3989546) Rhodopseudomonas palustris BisA53 4361256 YP_782479.1 CDS rpsE NC_008435.1 3989634 3990206 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(3989634..3990206) Rhodopseudomonas palustris BisA53 4361257 YP_782480.1 CDS rplR NC_008435.1 3990272 3990634 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(3990272..3990634) Rhodopseudomonas palustris BisA53 4361258 YP_782481.1 CDS rplF NC_008435.1 3990646 3991179 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(3990646..3991179) Rhodopseudomonas palustris BisA53 4361259 YP_782482.1 CDS rpsH NC_008435.1 3991193 3991591 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(3991193..3991591) Rhodopseudomonas palustris BisA53 4361260 YP_782483.1 CDS rpsN NC_008435.1 3991603 3991908 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(3991603..3991908) Rhodopseudomonas palustris BisA53 4361261 YP_782484.1 CDS rplE NC_008435.1 3991952 3992509 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(3991952..3992509) Rhodopseudomonas palustris BisA53 4361262 YP_782485.1 CDS rplX NC_008435.1 3992502 3992816 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(3992502..3992816) Rhodopseudomonas palustris BisA53 4361263 YP_782486.1 CDS rplN NC_008435.1 3992816 3993184 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(3992816..3993184) Rhodopseudomonas palustris BisA53 4361264 YP_782487.1 CDS rpsQ NC_008435.1 3993223 3993471 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(3993223..3993471) Rhodopseudomonas palustris BisA53 4361265 YP_782488.1 CDS RPE_3578 NC_008435.1 3993481 3993687 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(3993481..3993687) Rhodopseudomonas palustris BisA53 4361266 YP_782489.1 CDS rplP NC_008435.1 3993697 3994110 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(3993697..3994110) Rhodopseudomonas palustris BisA53 4361267 YP_782490.1 CDS rpsC NC_008435.1 3994143 3994841 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(3994143..3994841) Rhodopseudomonas palustris BisA53 4361268 YP_782491.1 CDS rplV NC_008435.1 3994865 3995251 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(3994865..3995251) Rhodopseudomonas palustris BisA53 4361269 YP_782492.1 CDS rpsS NC_008435.1 3995262 3995540 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(3995262..3995540) Rhodopseudomonas palustris BisA53 4361270 YP_782493.1 CDS rplB NC_008435.1 3995553 3996386 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(3995553..3996386) Rhodopseudomonas palustris BisA53 4361271 YP_782494.1 CDS rplW NC_008435.1 3996400 3996699 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(3996400..3996699) Rhodopseudomonas palustris BisA53 4361272 YP_782495.1 CDS rplD NC_008435.1 3996696 3997316 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(3996696..3997316) Rhodopseudomonas palustris BisA53 4361273 YP_782496.1 CDS rplC NC_008435.1 3997318 3998040 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(3997318..3998040) Rhodopseudomonas palustris BisA53 4361274 YP_782497.1 CDS rpsJ NC_008435.1 3998095 3998403 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(3998095..3998403) Rhodopseudomonas palustris BisA53 4361275 YP_782498.1 CDS RPE_3588 NC_008435.1 3998504 3999694 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(3998504..3999694) Rhodopseudomonas palustris BisA53 4361276 YP_782499.1 CDS RPE_3589 NC_008435.1 3999733 4001805 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(3999733..4001805) Rhodopseudomonas palustris BisA53 4361277 YP_782500.1 CDS RPE_3590 NC_008435.1 4001836 4002306 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(4001836..4002306) Rhodopseudomonas palustris BisA53 4361278 YP_782501.2 CDS rpsL NC_008435.1 4002322 4002693 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(4002322..4002693) Rhodopseudomonas palustris BisA53 4361279 YP_782502.1 CDS RPE_3592 NC_008435.1 4003375 4004574 R KEGG: rpc:RPC_3454 hypothetical protein; hypothetical protein complement(4003375..4004574) Rhodopseudomonas palustris BisA53 4361280 YP_782503.1 CDS RPE_3593 NC_008435.1 4004676 4005851 D PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: nha:Nham_1535 monooxygenase, FAD-binding; monooxygenase protein 4004676..4005851 Rhodopseudomonas palustris BisA53 4361281 YP_782504.1 CDS RPE_3594 NC_008435.1 4005870 4007963 R PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_3455 ABC transporter related; ABC transporter-like protein complement(4005870..4007963) Rhodopseudomonas palustris BisA53 4361282 YP_782505.1 CDS RPE_3595 NC_008435.1 4008109 4010166 R PFAM: amine oxidase; Methyltransferase type 11; KEGG: rpc:RPC_3456 methyltransferase type 11; type 11 methyltransferase complement(4008109..4010166) Rhodopseudomonas palustris BisA53 4361283 YP_782506.1 CDS RPE_3596 NC_008435.1 4010473 4014675 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(4010473..4014675) Rhodopseudomonas palustris BisA53 4361284 YP_782507.1 CDS rpoB NC_008435.1 4014858 4018979 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(4014858..4018979) Rhodopseudomonas palustris BisA53 4361285 YP_782508.1 CDS rplL NC_008435.1 4019460 4019831 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(4019460..4019831) Rhodopseudomonas palustris BisA53 4361286 YP_782509.1 CDS rplJ NC_008435.1 4019881 4020399 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(4019881..4020399) Rhodopseudomonas palustris BisA53 4361287 YP_782510.1 CDS RPE_3600 NC_008435.1 4021271 4022182 D KEGG: lpf:lpl2545 hypothetical protein; hypothetical protein 4021271..4022182 Rhodopseudomonas palustris BisA53 4361288 YP_782511.1 CDS RPE_3601 NC_008435.1 4022401 4022670 D hypothetical protein 4022401..4022670 Rhodopseudomonas palustris BisA53 4361289 YP_782512.1 CDS RPE_3602 NC_008435.1 4022750 4023403 R KEGG: rpb:RPB_2282 hypothetical protein; hypothetical protein complement(4022750..4023403) Rhodopseudomonas palustris BisA53 4361290 YP_782513.1 CDS RPE_3603 NC_008435.1 4023400 4025568 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rpc:RPC_3464 twin-arginine translocation pathway signal; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase complement(4023400..4025568) Rhodopseudomonas palustris BisA53 4361291 YP_782514.1 CDS RPE_3604 NC_008435.1 4025572 4026036 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rpb:RPB_2280 (2Fe-2S)-binding protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein complement(4025572..4026036) Rhodopseudomonas palustris BisA53 4361292 YP_782515.1 CDS RPE_3605 NC_008435.1 4026202 4027152 R PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rpb:RPB_2279 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase complement(4026202..4027152) Rhodopseudomonas palustris BisA53 4361293 YP_782516.1 CDS rplA NC_008435.1 4027245 4027937 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(4027245..4027937) Rhodopseudomonas palustris BisA53 4361294 YP_782517.1 CDS rplK NC_008435.1 4027943 4028371 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(4027943..4028371) Rhodopseudomonas palustris BisA53 4361295 YP_782518.1 CDS nusG NC_008435.1 4028618 4029148 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(4028618..4029148) Rhodopseudomonas palustris BisA53 4361296 YP_782519.1 CDS secE NC_008435.1 4029170 4029361 R forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(4029170..4029361) Rhodopseudomonas palustris BisA53 4361297 YP_782520.1 CDS RPE_3610 NC_008435.1 4029937 4031022 D PFAM: Rare lipoprotein A; nuclease (SNase domain protein); KEGG: rpa:RPA2332 rare lipoprotein A:Staphylococcus nuclease (SNase-like); nuclease 4029937..4031022 Rhodopseudomonas palustris BisA53 4361298 YP_782521.1 CDS RPE_3611 NC_008435.1 4031468 4033432 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_3475 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4031468..4033432 Rhodopseudomonas palustris BisA53 4361300 YP_782522.1 CDS RPE_3612 NC_008435.1 4033514 4034704 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(4033514..4034704) Rhodopseudomonas palustris BisA53 4361301 YP_782523.1 CDS RPE_3613 NC_008435.1 4034866 4036095 D PFAM: beta-lactamase; KEGG: rpb:RPB_2265 beta-lactamase; beta-lactamase 4034866..4036095 Rhodopseudomonas palustris BisA53 4361302 YP_782524.1 CDS RPE_3614 NC_008435.1 4036212 4036979 R PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpc:RPC_3478 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(4036212..4036979) Rhodopseudomonas palustris BisA53 4361303 YP_782525.1 CDS RPE_3615 NC_008435.1 4037036 4037788 R PFAM: Phosphoglycerate mutase; KEGG: rpc:RPC_3479 phosphoglycerate mutase; phosphoglycerate mutase complement(4037036..4037788) Rhodopseudomonas palustris BisA53 4361304 YP_782526.1 CDS RPE_3616 NC_008435.1 4037933 4038718 D PFAM: short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: rpd:RPD_3208 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 4037933..4038718 Rhodopseudomonas palustris BisA53 4361305 YP_782527.1 CDS RPE_3617 NC_008435.1 4039152 4039433 R hypothetical protein complement(4039152..4039433) Rhodopseudomonas palustris BisA53 4361306 YP_782528.1 CDS RPE_3618 NC_008435.1 4040021 4041082 R PFAM: aminoglycoside phosphotransferase; KEGG: rpb:RPB_2261 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(4040021..4041082) Rhodopseudomonas palustris BisA53 4361307 YP_782529.1 CDS RPE_3619 NC_008435.1 4041247 4042482 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpa:RPA3289 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(4041247..4042482) Rhodopseudomonas palustris BisA53 4361308 YP_782530.1 CDS RPE_3620 NC_008435.1 4042726 4043385 D PFAM: regulatory protein, TetR; KEGG: rpd:RPD_3211 regulatory protein, TetR; TetR family transcriptional regulator 4042726..4043385 Rhodopseudomonas palustris BisA53 4361309 YP_782531.1 CDS RPE_3621 NC_008435.1 4043583 4044014 D KEGG: rpb:RPB_2764 hypothetical protein; hypothetical protein 4043583..4044014 Rhodopseudomonas palustris BisA53 4361310 YP_782532.1 CDS RPE_3622 NC_008435.1 4044204 4044749 D KEGG: rpc:RPC_3484 hypothetical protein; hypothetical protein 4044204..4044749 Rhodopseudomonas palustris BisA53 4361311 YP_782533.1 CDS RPE_3623 NC_008435.1 4044784 4045767 D PFAM: alpha/beta hydrolase fold; KEGG: rpb:RPB_2975 alpha/beta hydrolase; alpha/beta hydrolase fold protein 4044784..4045767 Rhodopseudomonas palustris BisA53 4361312 YP_782534.1 CDS RPE_3624 NC_008435.1 4045710 4046687 R TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: rpc:RPC_3639 cysteine synthase A; cysteine synthase A complement(4045710..4046687) Rhodopseudomonas palustris BisA53 4361313 YP_782535.1 CDS RPE_3625 NC_008435.1 4047168 4047497 D KEGG: rpb:RPB_2807 hypothetical protein; hypothetical protein 4047168..4047497 Rhodopseudomonas palustris BisA53 4361314 YP_782536.1 CDS RPE_3626 NC_008435.1 4047802 4048263 D KEGG: rpc:RPC_0102 hypothetical protein; hypothetical protein 4047802..4048263 Rhodopseudomonas palustris BisA53 4361315 YP_782537.1 CDS RPE_3627 NC_008435.1 4048416 4050761 R KEGG: rpc:RPC_4603 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase complement(4048416..4050761) Rhodopseudomonas palustris BisA53 4361316 YP_782538.1 CDS RPE_3628 NC_008435.1 4050763 4051392 R PFAM: CheC domain protein; KEGG: rpc:RPC_4604 CheC, inhibitor of MCP methylation; MCP methylation inhibitor CheC complement(4050763..4051392) Rhodopseudomonas palustris BisA53 4361317 YP_782539.1 CDS RPE_3629 NC_008435.1 4051389 4051772 R PFAM: response regulator receiver; KEGG: rpc:RPC_4605 response regulator receiver domain protein (CheY-like); response regulator receiver protein complement(4051389..4051772) Rhodopseudomonas palustris BisA53 4361318 YP_782540.1 CDS RPE_3630 NC_008435.1 4051824 4052030 R KEGG: rpc:RPC_4606 hypothetical protein; hypothetical protein complement(4051824..4052030) Rhodopseudomonas palustris BisA53 4361319 YP_782541.1 CDS RPE_3631 NC_008435.1 4052060 4054327 R PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rpc:RPC_4607 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase complement(4052060..4054327) Rhodopseudomonas palustris BisA53 4361320 YP_782542.1 CDS RPE_3632 NC_008435.1 4054324 4054716 R PFAM: response regulator receiver; KEGG: rpc:RPC_4608 response regulator receiver domain protein (CheY-like); response regulator receiver protein complement(4054324..4054716) Rhodopseudomonas palustris BisA53 4361321 YP_782543.1 CDS RPE_3633 NC_008435.1 4054703 4055578 R PFAM: MCP methyltransferase, CheR-type; KEGG: rpc:RPC_4609 MCP methyltransferase, CheR-type; chemotaxis protein CheR complement(4054703..4055578) Rhodopseudomonas palustris BisA53 4361322 YP_782544.1 CDS RPE_3634 NC_008435.1 4055565 4056209 R PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: rpc:RPC_4610 PBS lyase heat-like repeat; HEAT repeat-containing PBS lyase complement(4055565..4056209) Rhodopseudomonas palustris BisA53 4361323 YP_782545.1 CDS RPE_3635 NC_008435.1 4056196 4057302 R PFAM: CheB methylesterase; response regulator receiver; KEGG: rpc:RPC_4611 response regulator receiver (CheY-like) modulated CheB methylesterase; response regulator receiver modulated CheB methylesterase complement(4056196..4057302) Rhodopseudomonas palustris BisA53 4361324 YP_782546.1 CDS RPE_3636 NC_008435.1 4057299 4058894 R PFAM: CheW domain protein; KEGG: rpc:RPC_4612 CheW protein; CheW protein complement(4057299..4058894) Rhodopseudomonas palustris BisA53 4361325 YP_782547.1 CDS RPE_3637 NC_008435.1 4058887 4060968 R PFAM: chemotaxis sensory transducer; KEGG: rpc:RPC_4613 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(4058887..4060968) Rhodopseudomonas palustris BisA53 4361326 YP_782548.1 CDS RPE_3638 NC_008435.1 4061220 4061873 D PFAM: CheC domain protein; KEGG: rpc:RPC_4614 CheC, inhibitor of MCP methylation; MCP methylation inhibitor CheC 4061220..4061873 Rhodopseudomonas palustris BisA53 4361327 YP_782549.1 CDS RPE_3639 NC_008435.1 4061894 4063006 R TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: rpc:RPC_4597 ribonuclease BN, putative; putative ribonuclease BN complement(4061894..4063006) Rhodopseudomonas palustris BisA53 4361328 YP_782550.1 CDS RPE_3640 NC_008435.1 4063056 4063319 R PFAM: Transglycosylase-associated protein; KEGG: rpc:RPC_2982 transglycosylase-associated protein; transglycosylase-associated protein complement(4063056..4063319) Rhodopseudomonas palustris BisA53 4361329 YP_782551.1 CDS RPE_3641 NC_008435.1 4063539 4064615 D PFAM: alpha/beta hydrolase fold; KEGG: bja:bll3759 hypothetical protein; alpha/beta hydrolase fold protein 4063539..4064615 Rhodopseudomonas palustris BisA53 4361330 YP_782552.1 CDS RPE_3642 NC_008435.1 4064566 4064694 R KEGG: rpa:RPA2078 hypothetical protein; hypothetical protein complement(4064566..4064694) Rhodopseudomonas palustris BisA53 4361331 YP_782553.1 CDS RPE_3643 NC_008435.1 4064675 4065640 R PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpc:RPC_4596 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(4064675..4065640) Rhodopseudomonas palustris BisA53 4361332 YP_782554.1 CDS RPE_3644 NC_008435.1 4065633 4067762 R KEGG: rfr:Rfer_2156 malto-oligosyltrehalose synthase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77; 4-alpha-glucanotransferase complement(4065633..4067762) Rhodopseudomonas palustris BisA53 4361333 YP_782555.1 CDS RPE_3645 NC_008435.1 4068070 4069347 D PFAM: manganese containing catalase; protein of unknown function DUF892; KEGG: bja:bll3758 Mn-containing catalase; catalase 4068070..4069347 Rhodopseudomonas palustris BisA53 4361334 YP_782556.1 CDS RPE_3646 NC_008435.1 4069537 4070187 D KEGG: rpd:RPD_0913 hypothetical protein; hypothetical protein 4069537..4070187 Rhodopseudomonas palustris BisA53 4361335 YP_782557.1 CDS RPE_3647 NC_008435.1 4070296 4071066 R TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rpd:RPD_0579 exodeoxyribonuclease III (xth); exodeoxyribonuclease III Xth complement(4070296..4071066) Rhodopseudomonas palustris BisA53 4361336 YP_782558.1 CDS RPE_3648 NC_008435.1 4071107 4071976 R PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpb:RPB_1505 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(4071107..4071976) Rhodopseudomonas palustris BisA53 4361337 YP_782559.1 CDS RPE_3649 NC_008435.1 4072180 4073349 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpc:RPC_1223 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 4072180..4073349 Rhodopseudomonas palustris BisA53 4361338 YP_782560.1 CDS RPE_3650 NC_008435.1 4073470 4075761 R TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: rpd:RPD_0346 oxidoreductase alpha (molybdopterin) subunit; oxidoreductase alpha (molybdopterin) subunit complement(4073470..4075761) Rhodopseudomonas palustris BisA53 4361339 YP_782561.1 CDS RPE_3651 NC_008435.1 4075967 4076152 D KEGG: bja:blr4214 hypothetical protein; hypothetical protein 4075967..4076152 Rhodopseudomonas palustris BisA53 4361340 YP_782562.1 CDS RPE_3652 NC_008435.1 4076226 4084757 R PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: bxe:Bxe_C1346 putative cyclic beta 1-2 glucan synthetase; glycosyltransferase complement(4076226..4084757) Rhodopseudomonas palustris BisA53 4361341 YP_782563.1 CDS RPE_3653 NC_008435.1 4085324 4085458 R KEGG: rpd:RPD_1604 hypothetical protein; hypothetical protein complement(4085324..4085458) Rhodopseudomonas palustris BisA53 4361342 YP_782564.1 CDS RPE_3654 NC_008435.1 4086465 4087217 R PFAM: HWE histidine kinase; KEGG: rpc:RPC_0615 signal transduction histidine kinase; signal transduction histidine kinase complement(4086465..4087217) Rhodopseudomonas palustris BisA53 4361343 YP_782565.1 CDS RPE_3655 NC_008435.1 4087441 4088139 D PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: bja:bll2244 probable cAMP-regulatory protein; Crp/FNR family transcriptional regulator 4087441..4088139 Rhodopseudomonas palustris BisA53 4361344 YP_782566.1 CDS RPE_3656 NC_008435.1 4088676 4089071 D KEGG: nha:Nham_3949 hypothetical protein; hypothetical protein 4088676..4089071 Rhodopseudomonas palustris BisA53 4361345 YP_782567.1 CDS RPE_3657 NC_008435.1 4089127 4090173 R PFAM: Bile acid:sodium symporter; KEGG: rpd:RPD_3417 bile acid:sodium symporter; bile acid:sodium symporter complement(4089127..4090173) Rhodopseudomonas palustris BisA53 4361346 YP_782568.1 CDS RPE_3658 NC_008435.1 4090181 4090606 R TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: rpd:RPD_3418 arsenate reductase; arsenate reductase complement(4090181..4090606) Rhodopseudomonas palustris BisA53 4361347 YP_782569.1 CDS RPE_3659 NC_008435.1 4090606 4091133 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: rpd:RPD_3419 low molecular weight phosphotyrosine protein phosphatase; protein tyrosine phosphatase complement(4090606..4091133) Rhodopseudomonas palustris BisA53 4361348 YP_782570.1 CDS RPE_3660 NC_008435.1 4091126 4091482 R PFAM: regulatory protein, ArsR; KEGG: rpa:RPA3556 transcriptional regulator, ArsR family, ArsR2; ArsR family transcriptional regulator complement(4091126..4091482) Rhodopseudomonas palustris BisA53 4361349 YP_782571.1 CDS RPE_3661 NC_008435.1 4091709 4091942 R KEGG: rpb:RPB_1646 thiol-disulfide isomerase and thioredoxins; thiol-disulfide isomerase and thioredoxins complement(4091709..4091942) Rhodopseudomonas palustris BisA53 4361350 YP_782572.1 CDS RPE_3662 NC_008435.1 4091955 4093007 R PFAM: permease; KEGG: rpb:RPB_1645 permease; permease complement(4091955..4093007) Rhodopseudomonas palustris BisA53 4361351 YP_782573.1 CDS RPE_3663 NC_008435.1 4093004 4093315 R PFAM: regulatory protein, ArsR; KEGG: rpb:RPB_1644 transcriptional regulator, ArsR family; ArsR family transcriptional regulator complement(4093004..4093315) Rhodopseudomonas palustris BisA53 4361352 YP_782574.1 CDS RPE_3664 NC_008435.1 4094093 4094602 D PFAM: protein of unknown function DUF892; KEGG: rpc:RPC_3623 protein of unknown function DUF892; hypothetical protein 4094093..4094602 Rhodopseudomonas palustris BisA53 4361354 YP_782575.1 CDS RPE_3665 NC_008435.1 4094617 4095180 D KEGG: rpc:RPC_3624 hypothetical protein; hypothetical protein 4094617..4095180 Rhodopseudomonas palustris BisA53 4361355 YP_782576.1 CDS RPE_3666 NC_008435.1 4095496 4096332 D PFAM: transglutaminase domain protein; KEGG: rpc:RPC_3627 transglutaminase-like; transglutaminase domain-containing protein 4095496..4096332 Rhodopseudomonas palustris BisA53 4361356 YP_782577.1 CDS RPE_3667 NC_008435.1 4096469 4096681 R KEGG: rpc:RPC_3628 hypothetical protein; hypothetical protein complement(4096469..4096681) Rhodopseudomonas palustris BisA53 4361357 YP_782578.1 CDS RPE_3668 NC_008435.1 4096804 4097220 D KEGG: rpd:RPD_3216 hypothetical protein; hypothetical protein 4096804..4097220 Rhodopseudomonas palustris BisA53 4361358 YP_782579.1 CDS RPE_3669 NC_008435.1 4097291 4098628 R PFAM: Carbohydrate-selective porin OprB; KEGG: rpc:RPC_3629 carbohydrate-selective porin OprB; carbohydrate-selective porin OprB complement(4097291..4098628) Rhodopseudomonas palustris BisA53 4361359 YP_782580.1 CDS RPE_3670 NC_008435.1 4099057 4100472 R KEGG: rpc:RPC_3630 hypothetical protein; hypothetical protein complement(4099057..4100472) Rhodopseudomonas palustris BisA53 4361360 YP_782581.1 CDS RPE_3671 NC_008435.1 4100469 4101308 R PFAM: iron permease FTR1; KEGG: rpc:RPC_3631 iron permease FTR1; iron permease FTR1 complement(4100469..4101308) Rhodopseudomonas palustris BisA53 4361361 YP_782582.1 CDS RPE_3672 NC_008435.1 4101325 4101684 R KEGG: rpc:RPC_3632 hypothetical protein; hypothetical protein complement(4101325..4101684) Rhodopseudomonas palustris BisA53 4361362 YP_782583.1 CDS RPE_3673 NC_008435.1 4101847 4102398 R KEGG: rpc:RPC_3633 conserved hypothetical membrane antigen; membrane antigen complement(4101847..4102398) Rhodopseudomonas palustris BisA53 4361363 YP_782584.1 CDS RPE_3674 NC_008435.1 4102677 4103528 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: bja:blr7343 probable short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(4102677..4103528) Rhodopseudomonas palustris BisA53 4361364 YP_782585.1 CDS RPE_3675 NC_008435.1 4103525 4104103 R PFAM: regulatory protein, TetR; KEGG: fra:Francci3_2475 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(4103525..4104103) Rhodopseudomonas palustris BisA53 4361365 YP_782586.1 CDS RPE_3676 NC_008435.1 4104200 4105177 R PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_0558 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(4104200..4105177) Rhodopseudomonas palustris BisA53 4361366 YP_782587.1 CDS RPE_3677 NC_008435.1 4105773 4106294 R PFAM: Cupin 2, conserved barrel domain protein; KEGG: rpc:RPC_2183 cupin 2, conserved barrel; cupin complement(4105773..4106294) Rhodopseudomonas palustris BisA53 4361367 YP_782588.1 CDS RPE_3678 NC_008435.1 4106281 4107387 R PFAM: ribulose bisphosphate carboxylase, large chain; KEGG: rpc:RPC_2184 ribulose 1 5-bisphosphate carboxylase large subunit-like; RuBisCO-like protein Rlp1 complement(4106281..4107387) Rhodopseudomonas palustris BisA53 4361368 YP_782589.1 CDS RPE_3679 NC_008435.1 4107417 4109297 R TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: rpd:RPD_1058 ferrous iron transport protein B; ferrous iron transport protein B complement(4107417..4109297) Rhodopseudomonas palustris BisA53 4361369 YP_782590.1 CDS RPE_3680 NC_008435.1 4109310 4109597 R PFAM: FeoA family protein; KEGG: rpd:RPD_1057 FeoA; FeoA family protein complement(4109310..4109597) Rhodopseudomonas palustris BisA53 4361370 YP_782591.1 CDS RPE_3681 NC_008435.1 4109923 4110246 R hypothetical protein complement(4109923..4110246) Rhodopseudomonas palustris BisA53 4361371 YP_782592.1 CDS RPE_3682 NC_008435.1 4110751 4111581 D TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: rpc:RPC_3641 RNA methyltransferase TrmH, group 3; RNA methyltransferase 4110751..4111581 Rhodopseudomonas palustris BisA53 4361373 YP_782593.1 CDS RPE_3683 NC_008435.1 4111753 4112739 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rpc:RPC_3643 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(4111753..4112739) Rhodopseudomonas palustris BisA53 4361374 YP_782594.1 CDS RPE_3684 NC_008435.1 4112897 4113814 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_3644 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(4112897..4113814) Rhodopseudomonas palustris BisA53 4361375 YP_782595.1 CDS RPE_3685 NC_008435.1 4113807 4114763 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_3645 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(4113807..4114763) Rhodopseudomonas palustris BisA53 4361376 YP_782596.1 CDS RPE_3687 NC_008435.1 4116626 4117696 R PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rpc:RPC_3647 ABC transporter related; ABC transporter-like protein complement(4116626..4117696) Rhodopseudomonas palustris BisA53 4361378 YP_782597.1 CDS RPE_3688 NC_008435.1 4117883 4119682 D catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 4117883..4119682 Rhodopseudomonas palustris BisA53 4361379 YP_782598.1 CDS RPE_3689 NC_008435.1 4119853 4120587 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: rpc:RPC_3649 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 4119853..4120587 Rhodopseudomonas palustris BisA53 4361380 YP_782599.1 CDS RPE_3690 NC_008435.1 4120760 4121506 D PFAM: short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: rpc:RPC_3650 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 4120760..4121506 Rhodopseudomonas palustris BisA53 4361381 YP_782600.1 CDS RPE_3691 NC_008435.1 4121796 4122038 R hypothetical protein complement(4121796..4122038) Rhodopseudomonas palustris BisA53 4361383 YP_782601.1 CDS RPE_3692 NC_008435.1 4122190 4124904 D PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: rpc:RPC_4481 iron-containing alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 4122190..4124904 Rhodopseudomonas palustris BisA53 4361384 YP_782602.1 CDS RPE_3693 NC_008435.1 4125232 4125933 D hypothetical protein 4125232..4125933 Rhodopseudomonas palustris BisA53 4361385 YP_782603.1 CDS RPE_3694 NC_008435.1 4126090 4126428 R KEGG: rpd:RPD_0683 hypothetical protein; hypothetical protein complement(4126090..4126428) Rhodopseudomonas palustris BisA53 4361386 YP_782604.1 CDS RPE_3695 NC_008435.1 4126747 4128588 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: neu:NE1909 diguanylate cyclase/phosphodiesterase domain 2 (EAL); diguanylate cyclase/phosphodiesterase complement(4126747..4128588) Rhodopseudomonas palustris BisA53 4361387 YP_782605.1 CDS RPE_3696 NC_008435.1 4128944 4129456 R KEGG: ret:RHE_PB00142 probable insertion sequence transposase protein; putative insertion sequence transposase protein complement(4128944..4129456) Rhodopseudomonas palustris BisA53 4361388 YP_782606.1 CDS RPE_3697 NC_008435.1 4129533 4129892 R KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein; putative insertion sequence transposase protein complement(4129533..4129892) Rhodopseudomonas palustris BisA53 4361389 YP_782607.1 CDS RPE_3698 NC_008435.1 4129973 4130440 D hypothetical protein 4129973..4130440 Rhodopseudomonas palustris BisA53 4361390 YP_782608.1 CDS RPE_3699 NC_008435.1 4130547 4130816 R hypothetical protein complement(4130547..4130816) Rhodopseudomonas palustris BisA53 4361391 YP_782609.1 CDS RPE_3700 NC_008435.1 4130899 4131270 R KEGG: rpc:RPC_3660 hypothetical protein; hypothetical protein complement(4130899..4131270) Rhodopseudomonas palustris BisA53 4361392 YP_782610.1 CDS RPE_3701 NC_008435.1 4131378 4131686 D PFAM: Excinuclease ABC, C subunit domain protein; KEGG: rpc:RPC_3661 excinuclease ABC, C subunit-like; excinuclease ABC subunit C 4131378..4131686 Rhodopseudomonas palustris BisA53 4361393 YP_782611.1 CDS RPE_3702 NC_008435.1 4132495 4132746 R KEGG: bja:bsl6731 hypothetical protein; hypothetical protein complement(4132495..4132746) Rhodopseudomonas palustris BisA53 4361394 YP_782612.1 CDS RPE_3703 NC_008435.1 4132743 4133219 R PFAM: glutathione peroxidase; KEGG: rpc:RPC_3665 glutathione peroxidase; glutathione peroxidase complement(4132743..4133219) Rhodopseudomonas palustris BisA53 4361395 YP_782613.1 CDS RPE_3704 NC_008435.1 4133247 4134647 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(4133247..4134647) Rhodopseudomonas palustris BisA53 4361396 YP_782614.1 CDS RPE_3705 NC_008435.1 4134717 4134974 R KEGG: rpc:RPC_3667 hypothetical protein; hypothetical protein complement(4134717..4134974) Rhodopseudomonas palustris BisA53 4361397 YP_782615.1 CDS RPE_3706 NC_008435.1 4135095 4136060 D KEGG: rpc:RPC_3668 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase 4135095..4136060 Rhodopseudomonas palustris BisA53 4361398 YP_782616.1 CDS RPE_3707 NC_008435.1 4136189 4136641 D TIGRFAM: Twin-arginine translocation pathway signal; KEGG: bja:blr6749 hypothetical protein; hypothetical protein 4136189..4136641 Rhodopseudomonas palustris BisA53 4361399 YP_782617.1 CDS RPE_3708 NC_008435.1 4136897 4139752 D catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; catalyzes isomerization of glucose 6-phosphate and fructose 6-phosphate; bifunctional transaldolase/phosoglucose isomerase 4136897..4139752 Rhodopseudomonas palustris BisA53 4361400 YP_782618.1 CDS RPE_3709 NC_008435.1 4139760 4140797 D similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 4139760..4140797 Rhodopseudomonas palustris BisA53 4361401 YP_782619.1 CDS RPE_3710 NC_008435.1 4140794 4142314 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 4140794..4142314 Rhodopseudomonas palustris BisA53 4361402 YP_782620.1 CDS RPE_3711 NC_008435.1 4142311 4143048 D TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: rpc:RPC_3673 6-phosphogluconolactonase; 6-phosphogluconolactonase 4142311..4143048 Rhodopseudomonas palustris BisA53 4361403 YP_782621.1 CDS RPE_3712 NC_008435.1 4143041 4143571 D KEGG: rpc:RPC_3674 carbohydrate kinase, thermoresistant glucokinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; carbohydrate kinase 4143041..4143571 Rhodopseudomonas palustris BisA53 4361404 YP_782622.1 CDS RPE_3713 NC_008435.1 4143568 4144377 D TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: rpc:RPC_3675 Cof protein; cof family hydrolase 4143568..4144377 Rhodopseudomonas palustris BisA53 4361405 YP_782623.1 CDS RPE_3714 NC_008435.1 4144669 4146465 R PFAM: glycoside hydrolase 15-related; KEGG: rpc:RPC_3676 glycoside hydrolase 15-related; glycoside hydrolase 15-like protein complement(4144669..4146465) Rhodopseudomonas palustris BisA53 4361406 YP_782624.1 CDS RPE_3715 NC_008435.1 4146470 4148422 R KEGG: rpc:RPC_3677 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77; 4-alpha-glucanotransferase complement(4146470..4148422) Rhodopseudomonas palustris BisA53 4361407 YP_782625.1 CDS RPE_3716 NC_008435.1 4148609 4150561 D PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: rpc:RPC_3678 alpha amylase, catalytic region; alpha amylase 4148609..4150561 Rhodopseudomonas palustris BisA53 4361408 YP_782626.1 CDS RPE_3717 NC_008435.1 4150573 4153875 D KEGG: rpc:RPC_3679 trehalose synthase-like; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; trehalose synthase 4150573..4153875 Rhodopseudomonas palustris BisA53 4361409 YP_782627.1 CDS RPE_3718 NC_008435.1 4153872 4156019 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 4153872..4156019 Rhodopseudomonas palustris BisA53 4361410 YP_782628.1 CDS RPE_3719 NC_008435.1 4156022 4158100 D KEGG: rpc:RPC_3681 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; glycogen debranching protein GlgX 4156022..4158100 Rhodopseudomonas palustris BisA53 4361411 YP_782629.1 CDS RPE_3720 NC_008435.1 4158185 4159507 D PFAM: MOFRL domain protein; KEGG: rpc:RPC_4629 hydroxypyruvate reductase; hydroxypyruvate reductase 4158185..4159507 Rhodopseudomonas palustris BisA53 4361412 YP_782630.1 CDS RPE_3721 NC_008435.1 4159675 4162467 D KEGG: rpc:RPC_3682 malto-oligosyltrehalose synthase; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; malto-oligosyltrehalose synthase 4159675..4162467 Rhodopseudomonas palustris BisA53 4361413 YP_782631.1 CDS RPE_3722 NC_008435.1 4162761 4163072 R KEGG: rpc:RPC_3683 hypothetical protein; hypothetical protein complement(4162761..4163072) Rhodopseudomonas palustris BisA53 4361414 YP_782632.1 CDS RPE_3723 NC_008435.1 4163237 4163401 D KEGG: bja:blr6772 hypothetical protein; hypothetical protein 4163237..4163401 Rhodopseudomonas palustris BisA53 4361415 YP_782633.1 CDS ligD NC_008435.1 4163405 4166128 R catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase complement(4163405..4166128) Rhodopseudomonas palustris BisA53 4361416 YP_782634.1 CDS RPE_3725 NC_008435.1 4166262 4167137 D PFAM: Ku domain protein; KEGG: rpc:RPC_3686 Ku; Ku domain-containing protein 4166262..4167137 Rhodopseudomonas palustris BisA53 4361417 YP_782635.1 CDS RPE_3726 NC_008435.1 4167748 4168101 R KEGG: rpd:RPD_3492 hypothetical protein; hypothetical protein complement(4167748..4168101) Rhodopseudomonas palustris BisA53 4361418 YP_782636.1 CDS RPE_3727 NC_008435.1 4168176 4168415 R PFAM: SirA family protein; KEGG: nha:Nham_3129 SirA-like; SirA-like protein complement(4168176..4168415) Rhodopseudomonas palustris BisA53 4361419 YP_782637.1 CDS mobA NC_008435.1 4168518 4169153 D in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 4168518..4169153 Rhodopseudomonas palustris BisA53 4361420 YP_782638.1 CDS RPE_3729 NC_008435.1 4169475 4170191 R PFAM: Urease accessory protein UreF; KEGG: rpb:RPB_1868 urease accessory protein UreF; urease accessory protein UreF complement(4169475..4170191) Rhodopseudomonas palustris BisA53 4361421 YP_782639.1 CDS RPE_3730 NC_008435.1 4170201 4170950 R PFAM: UreE urease accessory domain protein domain protein; UreE urease accessory domain protein; KEGG: rpb:RPB_1867 UreE urease accessory-like; UreE urease accessory domain-containing protein complement(4170201..4170950) Rhodopseudomonas palustris BisA53 4361422 YP_782640.1 CDS RPE_3731 NC_008435.1 4170999 4171298 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rpb:RPB_1865 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase complement(4170999..4171298) Rhodopseudomonas palustris BisA53 4361423 YP_782641.1 CDS ureC NC_008435.1 4172776 4174488 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha complement(4172776..4174488) Rhodopseudomonas palustris BisA53 4361424 YP_782642.1 CDS RPE_3733 NC_008435.1 4174485 4175021 R PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: rpa:RPA3661 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(4174485..4175021) Rhodopseudomonas palustris BisA53 4361425 YP_782643.1 CDS ureB NC_008435.1 4175049 4175354 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active; urease subunit beta complement(4175049..4175354) Rhodopseudomonas palustris BisA53 4361426 YP_782644.1 CDS ureA NC_008435.1 4175481 4175783 R UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma complement(4175481..4175783) Rhodopseudomonas palustris BisA53 4361427 YP_782645.1 CDS RPE_3736 NC_008435.1 4175811 4176671 R PFAM: Urease accessory protein UreD; KEGG: bja:blr1453 urease accessory protein; urease accessory protein UreD complement(4175811..4176671) Rhodopseudomonas palustris BisA53 4361428 YP_782646.1 CDS RPE_3737 NC_008435.1 4176875 4177570 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_1798 ABC transporter related; ABC transporter-like protein complement(4176875..4177570) Rhodopseudomonas palustris BisA53 4361429 YP_782647.1 CDS RPE_3738 NC_008435.1 4177690 4178451 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_1797 ABC transporter related; ABC transporter-like protein complement(4177690..4178451) Rhodopseudomonas palustris BisA53 4361430 YP_782648.1 CDS RPE_3739 NC_008435.1 4178456 4179628 R PFAM: inner-membrane translocator; KEGG: rpc:RPC_3700 inner-membrane translocator; inner-membrane translocator complement(4178456..4179628) Rhodopseudomonas palustris BisA53 4361431 YP_782649.1 CDS RPE_3740 NC_008435.1 4179625 4181319 R PFAM: inner-membrane translocator; KEGG: rpc:RPC_3701 inner-membrane translocator; inner-membrane translocator complement(4179625..4181319) Rhodopseudomonas palustris BisA53 4361432 YP_782650.1 CDS RPE_3741 NC_008435.1 4181524 4182843 R KEGG: rpd:RPD_3510 twin-arginine translocation pathway signal; branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein complement(4181524..4182843) Rhodopseudomonas palustris BisA53 4361433 YP_782651.1 CDS RPE_3742 NC_008435.1 4183302 4184774 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: rpc:RPC_3703 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 4183302..4184774 Rhodopseudomonas palustris BisA53 4361434 YP_782652.1 CDS infA NC_008435.1 4184797 4185081 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 4184797..4185081 Rhodopseudomonas palustris BisA53 4361435 YP_782653.1 CDS RPE_3744 NC_008435.1 4185357 4185569 D PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: rpa:RPA3672 cold shock DNA binding protein; cold-shock DNA-binding domain-containing protein 4185357..4185569 Rhodopseudomonas palustris BisA53 4361436 YP_782654.1 CDS RPE_3745 NC_008435.1 4185697 4186338 R KEGG: rpc:RPC_3706 TadE-like; TadE-like protein complement(4185697..4186338) Rhodopseudomonas palustris BisA53 4361437 YP_782655.1 CDS RPE_3746 NC_008435.1 4186349 4186861 R PFAM: TadE family protein; KEGG: rpb:RPB_1789 TadE-like; TadE family protein complement(4186349..4186861) Rhodopseudomonas palustris BisA53 4361438 YP_782656.1 CDS RPE_3747 NC_008435.1 4186923 4187252 R hypothetical protein complement(4186923..4187252) Rhodopseudomonas palustris BisA53 4361439 YP_782657.1 CDS RPE_3748 NC_008435.1 4187573 4187818 D PFAM: Flp/Fap pilin component; KEGG: rpd:RPD_3517 Flp/Fap pilin component; Flp/Fap pilin component 4187573..4187818 Rhodopseudomonas palustris BisA53 4361440 YP_782658.1 CDS RPE_3749 NC_008435.1 4188139 4188663 D PFAM: peptidase A24A, prepilin type IV; KEGG: rpc:RPC_3711 peptidase A24A, prepilin type IV; peptidase A24A, prepilin type IV 4188139..4188663 Rhodopseudomonas palustris BisA53 4361441 YP_782659.1 CDS RPE_3750 NC_008435.1 4188785 4189069 D KEGG: rpd:RPD_3519 Flp pilus assembly CpaB; hypothetical protein 4188785..4189069 Rhodopseudomonas palustris BisA53 4361442 YP_782660.1 CDS RPE_3751 NC_008435.1 4189066 4190526 D PFAM: type II and III secretion system protein; transport-associated; KEGG: rpc:RPC_3713 type II and III secretion system protein; type II and III secretion system protein 4189066..4190526 Rhodopseudomonas palustris BisA53 4361443 YP_782661.1 CDS RPE_3752 NC_008435.1 4190544 4191293 D Caulobacter-type pilus biogenesis lipoprotein CpaD; TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; KEGG: rpc:RPC_3714 pilus assembly protein CpaD; pilus biogenesis lipoprotein CpaD 4190544..4191293 Rhodopseudomonas palustris BisA53 4361444 YP_782662.1 CDS RPE_3753 NC_008435.1 4191290 4192561 D KEGG: rpc:RPC_3715 putative pilus assembly protein CpaE; putative pilus assembly protein CpaE 4191290..4192561 Rhodopseudomonas palustris BisA53 4361445 YP_782663.1 CDS RPE_3754 NC_008435.1 4192580 4194049 D PFAM: type II secretion system protein E; KEGG: rpc:RPC_3716 type II secretion system protein E; type II secretion system protein E 4192580..4194049 Rhodopseudomonas palustris BisA53 4361446 YP_782664.1 CDS RPE_3755 NC_008435.1 4194061 4195035 D PFAM: type II secretion system protein; KEGG: rpc:RPC_3717 type II secretion system protein; type II secretion system protein 4194061..4195035 Rhodopseudomonas palustris BisA53 4361447 YP_782665.1 CDS RPE_3756 NC_008435.1 4195048 4196022 D PFAM: type II secretion system protein; KEGG: rpc:RPC_3718 type II secretion system protein; type II secretion system protein 4195048..4196022 Rhodopseudomonas palustris BisA53 4361448 YP_782666.1 CDS RPE_3757 NC_008435.1 4196217 4197014 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpc:RPC_3719 tetratricopeptide TPR_2; TPR repeat-containing protein complement(4196217..4197014) Rhodopseudomonas palustris BisA53 4361449 YP_782667.1 CDS RPE_3758 NC_008435.1 4197150 4198532 D PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: rpc:RPC_3720 leucyl aminopeptidase; leucyl aminopeptidase 4197150..4198532 Rhodopseudomonas palustris BisA53 4361450 YP_782668.1 CDS RPE_3759 NC_008435.1 4198525 4199364 D PFAM: NLP/P60 protein; KEGG: bja:bll1430 hypothetical protein; NLP/P60 family lipoprotein 4198525..4199364 Rhodopseudomonas palustris BisA53 4361451 YP_782669.1 CDS RPE_3760 NC_008435.1 4199345 4199986 R TIGRFAM: Nucleoside diphosphate pyrophosphatase; PFAM: NUDIX hydrolase; KEGG: rpc:RPC_3722 nucleoside diphosphate pyrophosphatase; nucleoside diphosphate pyrophosphatase complement(4199345..4199986) Rhodopseudomonas palustris BisA53 4361452 YP_782670.1 CDS RPE_3761 NC_008435.1 4199995 4201632 R PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: nwi:Nwi_0292 ABC transporter, ATPase subunit; ABC transporter-like protein complement(4199995..4201632) Rhodopseudomonas palustris BisA53 4361453 YP_782671.1 CDS RPE_3762 NC_008435.1 4201632 4202087 R KEGG: rpd:RPD_3531 PilT protein-like; PilT protein-like protein complement(4201632..4202087) Rhodopseudomonas palustris BisA53 4361454 YP_782672.1 CDS RPE_3763 NC_008435.1 4202078 4202323 R hypothetical protein complement(4202078..4202323) Rhodopseudomonas palustris BisA53 4361455 YP_782673.1 CDS RPE_3764 NC_008435.1 4202336 4203514 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_3726 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(4202336..4203514) Rhodopseudomonas palustris BisA53 4361456 YP_782674.1 CDS RPE_3765 NC_008435.1 4203514 4204623 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_3727 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(4203514..4204623) Rhodopseudomonas palustris BisA53 4361457 YP_782675.1 CDS RPE_3766 NC_008435.1 4204627 4206516 R PFAM: extracellular solute-binding protein, family 5; KEGG: rpc:RPC_3728 extracellular solute-binding protein, family 5; extracellular solute-binding protein complement(4204627..4206516) Rhodopseudomonas palustris BisA53 4361458 YP_782676.1 CDS RPE_3767 NC_008435.1 4206513 4208411 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: rpc:RPC_3729 extracellular solute-binding protein, family 5; extracellular solute-binding protein complement(4206513..4208411) Rhodopseudomonas palustris BisA53 4361459 YP_782677.1 CDS RPE_3768 NC_008435.1 4208718 4209272 R PFAM: cytochrome c, class I; KEGG: rpc:RPC_3730 cytochrome c, class I; cytochrome c, class I complement(4208718..4209272) Rhodopseudomonas palustris BisA53 4361460 YP_782678.1 CDS RPE_3769 NC_008435.1 4209510 4210253 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 4209510..4210253 Rhodopseudomonas palustris BisA53 4361461 YP_782679.1 CDS RPE_3770 NC_008435.1 4210298 4211158 D catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; prephenate dehydratase 4210298..4211158 Rhodopseudomonas palustris BisA53 4361462 YP_782680.1 CDS RPE_3771 NC_008435.1 4211161 4212180 R PFAM: luciferase family protein; KEGG: rpc:RPC_3733 luciferase-like; luciferase-like protein complement(4211161..4212180) Rhodopseudomonas palustris BisA53 4361463 YP_782681.1 CDS RPE_3772 NC_008435.1 4212603 4213499 D KEGG: rpb:RPB_1765 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 4212603..4213499 Rhodopseudomonas palustris BisA53 4361464 YP_782682.1 CDS metH NC_008435.1 4213503 4217384 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 4213503..4217384 Rhodopseudomonas palustris BisA53 4361465 YP_782683.1 CDS RPE_3774 NC_008435.1 4218719 4220221 R TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: rpc:RPC_2231 glycerol kinase; glycerol kinase complement(4218719..4220221) Rhodopseudomonas palustris BisA53 4361466 YP_782684.1 CDS RPE_3775 NC_008435.1 4220574 4221716 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpb:RPB_1750 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(4220574..4221716) Rhodopseudomonas palustris BisA53 4361467 YP_782685.1 CDS RPE_3776 NC_008435.1 4221913 4223151 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rpd:RPD_3550 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(4221913..4223151) Rhodopseudomonas palustris BisA53 4361468 YP_782686.1 CDS RPE_3777 NC_008435.1 4223225 4224343 D PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rpc:RPC_4622 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 4223225..4224343 Rhodopseudomonas palustris BisA53 4361469 YP_782687.1 CDS RPE_3778 NC_008435.1 4224668 4225855 R KEGG: rpb:RPB_1748 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase complement(4224668..4225855) Rhodopseudomonas palustris BisA53 4361470 YP_782688.1 CDS RPE_3779 NC_008435.1 4225852 4227528 R PFAM: AMP-dependent synthetase and ligase; KEGG: rpa:RPA3716 pimeloyl-CoA ligase; AMP-dependent synthetase and ligase complement(4225852..4227528) Rhodopseudomonas palustris BisA53 4361471 YP_782689.1 CDS RPE_3780 NC_008435.1 4227740 4229824 R PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: rpb:RPB_1746 enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase complement(4227740..4229824) Rhodopseudomonas palustris BisA53 4361472 YP_782690.1 CDS RPE_3781 NC_008435.1 4229944 4230804 D PFAM: regulatory proteins, IclR; KEGG: rpc:RPC_2225 transcriptional regulator, IclR family; IclR family transcriptional regulator 4229944..4230804 Rhodopseudomonas palustris BisA53 4361473 YP_782691.1 CDS RPE_3782 NC_008435.1 4230868 4231665 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr7823 ABC transporter ATP-binding protein; ABC transporter-like protein 4230868..4231665 Rhodopseudomonas palustris BisA53 4361474 YP_782692.1 CDS RPE_3783 NC_008435.1 4231662 4232372 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA3720 putative branched-chain amino acid transport system ATP-binding protein; ABC transporter-like protein 4231662..4232372 Rhodopseudomonas palustris BisA53 4361475 YP_782693.1 CDS RPE_3784 NC_008435.1 4232383 4233261 D PFAM: inner-membrane translocator; KEGG: rpd:RPD_3557 inner-membrane translocator; inner-membrane translocator 4232383..4233261 Rhodopseudomonas palustris BisA53 4361476 YP_782694.1 CDS RPE_3785 NC_008435.1 4233264 4234277 D PFAM: inner-membrane translocator; KEGG: rpd:RPD_3558 inner-membrane translocator; inner-membrane translocator 4233264..4234277 Rhodopseudomonas palustris BisA53 4361477 YP_782695.1 CDS RPE_3786 NC_008435.1 4234434 4235687 D PFAM: Extracellular ligand-binding receptor; KEGG: rpd:RPD_3559 extracellular ligand-binding receptor; extracellular ligand-binding receptor 4234434..4235687 Rhodopseudomonas palustris BisA53 4361478 YP_782696.1 CDS RPE_3787 NC_008435.1 4235852 4237087 D PFAM: Extracellular ligand-binding receptor; KEGG: rpa:RPA3724 possible high-affinity leucine-isoleucine-valine transport system; periplasmic binding protein; extracellular ligand-binding receptor 4235852..4237087 Rhodopseudomonas palustris BisA53 4361479 YP_782697.1 CDS RPE_3788 NC_008435.1 4237412 4238641 D PFAM: Extracellular ligand-binding receptor; KEGG: rpd:RPD_3562 putative leucine/isoleucine/valine-binding protein precursor; extracellular ligand-binding receptor 4237412..4238641 Rhodopseudomonas palustris BisA53 4361480 YP_782698.1 CDS RPE_3789 NC_008435.1 4238803 4240035 D PFAM: Extracellular ligand-binding receptor; KEGG: rpd:RPD_1898 extracellular ligand-binding receptor; extracellular ligand-binding receptor 4238803..4240035 Rhodopseudomonas palustris BisA53 4361481 YP_782699.1 CDS RPE_3790 NC_008435.1 4240219 4240761 R KEGG: rpc:RPC_2223 hypothetical protein; hypothetical protein complement(4240219..4240761) Rhodopseudomonas palustris BisA53 4361482 YP_782700.1 CDS RPE_3791 NC_008435.1 4240813 4242537 D PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: rpd:RPD_1895 sodium/hydrogen exchanger; sodium/hydrogen exchanger 4240813..4242537 Rhodopseudomonas palustris BisA53 4361483 YP_782701.1 CDS RPE_3792 NC_008435.1 4243137 4244825 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_1843 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4243137..4244825 Rhodopseudomonas palustris BisA53 4361484 YP_782702.1 CDS RPE_3793 NC_008435.1 4244942 4245685 R KEGG: rpc:RPC_2220 putative ParA family partition protein; ParA family partition protein complement(4244942..4245685) Rhodopseudomonas palustris BisA53 4361485 YP_782703.1 CDS RPE_3794 NC_008435.1 4245885 4246400 R PFAM: regulatory protein, MarR; KEGG: rpd:RPD_1893 regulatory protein, MarR; MarR family transcriptional regulator complement(4245885..4246400) Rhodopseudomonas palustris BisA53 4361486 YP_782704.1 CDS RPE_3795 NC_008435.1 4246581 4247621 D PFAM: inner-membrane translocator; KEGG: rpd:RPD_1892 inner-membrane translocator; inner-membrane translocator 4246581..4247621 Rhodopseudomonas palustris BisA53 4361487 YP_782705.1 CDS RPE_3796 NC_008435.1 4247627 4249396 D PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_3572 branched-chain amino acid transport system ATP-binding protein; ABC transporter-like protein 4247627..4249396 Rhodopseudomonas palustris BisA53 4361488 YP_782706.1 CDS RPE_3797 NC_008435.1 4249393 4250136 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA1791 branched-chain amino acid transport system ATP-binding protein; ABC transporter-like protein 4249393..4250136 Rhodopseudomonas palustris BisA53 4361489 YP_782707.1 CDS RPE_3798 NC_008435.1 4250298 4251524 D TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; KEGG: bba:Bd0203 methyl-accepting chemotaxis protein; putative PAS/PAC sensor protein 4250298..4251524 Rhodopseudomonas palustris BisA53 4361490 YP_782708.1 CDS RPE_3799 NC_008435.1 4251542 4252324 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpb:RPB_3574 diguanylate cyclase; diguanylate cyclase complement(4251542..4252324) Rhodopseudomonas palustris BisA53 4361491 YP_782709.1 CDS RPE_3800 NC_008435.1 4252498 4253646 R PFAM: Extracellular ligand-binding receptor; KEGG: bja:blr7848 probable substrate-binding protein; extracellular ligand-binding receptor complement(4252498..4253646) Rhodopseudomonas palustris BisA53 4361492 YP_782710.1 CDS RPE_3801 NC_008435.1 4253728 4254174 R PFAM: thioesterase superfamily protein; KEGG: rpd:RPD_1888 thioesterase superfamily; thioesterase superfamily protein complement(4253728..4254174) Rhodopseudomonas palustris BisA53 4361493 YP_782711.1 CDS RPE_3802 NC_008435.1 4254407 4256308 R catalyzes the conversion of ferulic acid to feruloyl-CoA; feruloyl-CoA synthase complement(4254407..4256308) Rhodopseudomonas palustris BisA53 4361494 YP_782712.1 CDS RPE_3803 NC_008435.1 4256308 4257114 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(4256308..4257114) Rhodopseudomonas palustris BisA53 4361495 YP_782713.1 CDS RPE_3804 NC_008435.1 4257379 4257843 R KEGG: rpb:RPB_3579 hypothetical protein; hypothetical protein complement(4257379..4257843) Rhodopseudomonas palustris BisA53 4361496 YP_782714.1 CDS RPE_3805 NC_008435.1 4257840 4259144 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpb:RPB_3580 TRAP dicarboxylate transporter DctM subunit; TRAP C4-dicarboxylate transport system permease DctM complement(4257840..4259144) Rhodopseudomonas palustris BisA53 4361497 YP_782715.1 CDS RPE_3806 NC_008435.1 4259151 4259720 R KEGG: rpb:RPB_3581 TrapT family, DctQ subunit, C4-dicarboxylate transport; TRAP dicarboxylate family transporter subunit DctQ complement(4259151..4259720) Rhodopseudomonas palustris BisA53 4361498 YP_782716.1 CDS RPE_3807 NC_008435.1 4259884 4260909 R PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rpb:RPB_3582 TRAP dicarboxylate transporter DctP subunit; TRAP dicarboxylate transporter subunit DctP complement(4259884..4260909) Rhodopseudomonas palustris BisA53 4361499 YP_782717.1 CDS RPE_3808 NC_008435.1 4261082 4262251 D catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase 4261082..4262251 Rhodopseudomonas palustris BisA53 4361500 YP_782718.1 CDS RPE_3809 NC_008435.1 4262613 4263731 R PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rpc:RPC_4622 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein complement(4262613..4263731) Rhodopseudomonas palustris BisA53 4361501 YP_782719.1 CDS RPE_3810 NC_008435.1 4263894 4264793 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_2218 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4263894..4264793) Rhodopseudomonas palustris BisA53 4361502 YP_782720.1 CDS RPE_3811 NC_008435.1 4264913 4265548 D PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rpc:RPC_2217 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 4264913..4265548 Rhodopseudomonas palustris BisA53 4361503 YP_782721.1 CDS RPE_3812 NC_008435.1 4265557 4265877 D PFAM: protein of unknown function UPF0153; KEGG: bja:blr7852 hypothetical protein; hypothetical protein 4265557..4265877 Rhodopseudomonas palustris BisA53 4361504 YP_782722.1 CDS RPE_3813 NC_008435.1 4265882 4266289 R KEGG: rpc:RPC_2208 hypothetical protein; hypothetical protein complement(4265882..4266289) Rhodopseudomonas palustris BisA53 4361505 YP_782723.1 CDS RPE_3816 NC_008435.1 4268751 4270034 R PFAM: Citrate transporter; KEGG: rpc:RPC_2206 putative Na+/H+ antiporter; citrate transporter complement(4268751..4270034) Rhodopseudomonas palustris BisA53 4361507 YP_782724.1 CDS RPE_3817 NC_008435.1 4270232 4270636 R KEGG: rpc:RPC_2205 hypothetical protein; hypothetical protein complement(4270232..4270636) Rhodopseudomonas palustris BisA53 4361508 YP_782725.1 CDS RPE_3818 NC_008435.1 4270863 4271729 R KEGG: rpc:RPC_2204 hypothetical protein; hypothetical protein complement(4270863..4271729) Rhodopseudomonas palustris BisA53 4361509 YP_782726.1 CDS RPE_3819 NC_008435.1 4271742 4272410 R PFAM: cyclic nucleotide-binding; KEGG: rpc:RPC_2203 cyclic nucleotide-binding domain (cNMP-BD) protein; cyclic nucleotide-binding protein complement(4271742..4272410) Rhodopseudomonas palustris BisA53 4361510 YP_782727.1 CDS RPE_3820 NC_008435.1 4272594 4273379 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpc:RPC_2202 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 4272594..4273379 Rhodopseudomonas palustris BisA53 4361511 YP_782728.1 CDS RPE_3821 NC_008435.1 4273587 4274273 R PFAM: nitroreductase; KEGG: rpd:RPD_3603 nitroreductase; nitroreductase complement(4273587..4274273) Rhodopseudomonas palustris BisA53 4361512 YP_782729.1 CDS RPE_3822 NC_008435.1 4274442 4275686 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rpb:RPB_1689 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(4274442..4275686) Rhodopseudomonas palustris BisA53 4361513 YP_782730.1 CDS RPE_3823 NC_008435.1 4275803 4276930 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rpc:RPC_2197 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(4275803..4276930) Rhodopseudomonas palustris BisA53 4361514 YP_782731.1 CDS RPE_3824 NC_008435.1 4277333 4279207 R PFAM: AMP-dependent synthetase and ligase; KEGG: rpd:RPD_3607 AMP-dependent synthetase and ligase; acyl-CoA synthetase complement(4277333..4279207) Rhodopseudomonas palustris BisA53 4361515 YP_782732.1 CDS RPE_3825 NC_008435.1 4279432 4280697 R PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpa:RPA1705 possible 3-hydroxyacyl-CoA dehydrogenase type II; short-chain dehydrogenase/reductase SDR complement(4279432..4280697) Rhodopseudomonas palustris BisA53 4361516 YP_782733.1 CDS RPE_3826 NC_008435.1 4280907 4281578 R PFAM: regulatory protein, TetR; KEGG: rpc:RPC_2195 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(4280907..4281578) Rhodopseudomonas palustris BisA53 4361517 YP_782734.1 CDS RPE_3827 NC_008435.1 4281729 4282901 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 4281729..4282901 Rhodopseudomonas palustris BisA53 4361518 YP_782735.1 CDS RPE_3828 NC_008435.1 4283089 4284633 D activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 4283089..4284633 Rhodopseudomonas palustris BisA53 4361519 YP_782736.1 CDS RPE_3829 NC_008435.1 4284649 4285104 R PFAM: Resolvase, N-terminal domain; KEGG: mag:amb4514 site-specific recombinase; resolvase domain-containing protein complement(4284649..4285104) Rhodopseudomonas palustris BisA53 4361520 YP_782737.1 CDS RPE_3830 NC_008435.1 4285405 4287303 R TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Autotransporter beta- domain protein; KEGG: rpc:RPC_4652 outer membrane autotransporter barrel; outer membrane autotransporter complement(4285405..4287303) Rhodopseudomonas palustris BisA53 4361521 YP_782738.1 CDS RPE_3831 NC_008435.1 4287513 4288115 R PFAM: GCN5-related N-acetyltransferase; KEGG: bja:bll7902 hypothetical protein; N-acetyltransferase GCN5 complement(4287513..4288115) Rhodopseudomonas palustris BisA53 4361522 YP_782739.1 CDS RPE_3832 NC_008435.1 4288136 4288339 R PFAM: protein of unknown function DUF1127; KEGG: rpc:RPC_3736 hypothetical protein; hypothetical protein complement(4288136..4288339) Rhodopseudomonas palustris BisA53 4361523 YP_782740.1 CDS RPE_3833 NC_008435.1 4288452 4289384 D Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 4288452..4289384 Rhodopseudomonas palustris BisA53 4361524 YP_782741.1 CDS RPE_3834 NC_008435.1 4289381 4289866 D PFAM: CinA domain protein; KEGG: rpb:RPB_1678 CinA-like; CinA domain-containing protein 4289381..4289866 Rhodopseudomonas palustris BisA53 4361525 YP_782742.1 CDS RPE_3835 NC_008435.1 4289868 4290491 R KEGG: rpc:RPC_3467 propeptide, PepSY amd peptidase M4; propeptide, PepSY amd peptidase M4 complement(4289868..4290491) Rhodopseudomonas palustris BisA53 4361526 YP_782743.1 CDS RPE_3836 NC_008435.1 4290537 4291139 R KEGG: rpc:RPC_3468 hypothetical protein; hypothetical protein complement(4290537..4291139) Rhodopseudomonas palustris BisA53 4361527 YP_782744.1 CDS RPE_3837 NC_008435.1 4291320 4291925 D PFAM: regulatory protein, TetR; KEGG: pol:Bpro_5551 transcriptional regulator, TetR family; TetR family transcriptional regulator 4291320..4291925 Rhodopseudomonas palustris BisA53 4361528 YP_782745.1 CDS RPE_3838 NC_008435.1 4292093 4292362 D hypothetical protein 4292093..4292362 Rhodopseudomonas palustris BisA53 4361529 YP_782746.1 CDS RPE_3839 NC_008435.1 4292394 4292855 D hypothetical protein 4292394..4292855 Rhodopseudomonas palustris BisA53 4361530 YP_782747.1 CDS RPE_3840 NC_008435.1 4292950 4293546 R PFAM: manganese and iron superoxide dismutase; KEGG: rpb:RPB_1677 superoxide dismutase; superoxide dismutase complement(4292950..4293546) Rhodopseudomonas palustris BisA53 4361531 YP_782748.1 CDS RPE_3841 NC_008435.1 4293639 4294880 R PFAM: major facilitator superfamily MFS_1; KEGG: rpc:RPC_3739 major facilitator superfamily MFS_1; major facilitator transporter complement(4293639..4294880) Rhodopseudomonas palustris BisA53 4361532 YP_782749.1 CDS RPE_3842 NC_008435.1 4294992 4295516 D PFAM: GCN5-related N-acetyltransferase; KEGG: bja:blr7775 hypothetical protein; N-acetyltransferase GCN5 4294992..4295516 Rhodopseudomonas palustris BisA53 4361533 YP_782750.1 CDS RPE_3843 NC_008435.1 4295618 4296991 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bja:blr7776 probable cation efflux system protein; MATE efflux family protein 4295618..4296991 Rhodopseudomonas palustris BisA53 4361534 YP_782751.1 CDS RPE_3844 NC_008435.1 4297182 4297616 D KEGG: rpd:RPD_3624 hypothetical protein; hypothetical protein 4297182..4297616 Rhodopseudomonas palustris BisA53 4361535 YP_782752.1 CDS RPE_3845 NC_008435.1 4298034 4299101 D PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: rpb:RPB_0742 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 4298034..4299101 Rhodopseudomonas palustris BisA53 4361536 YP_782753.1 CDS RPE_3846 NC_008435.1 4299285 4299584 R PFAM: histone family protein DNA-binding protein; KEGG: rpc:RPC_3750 histone-like DNA-binding protein; histone family protein DNA-binding protein complement(4299285..4299584) Rhodopseudomonas palustris BisA53 4361537 YP_782754.1 CDS RPE_3847 NC_008435.1 4299905 4300468 R PFAM: Phosphoglycerate mutase; KEGG: rpc:RPC_1895 phosphoglycerate mutase; phosphoglycerate mutase complement(4299905..4300468) Rhodopseudomonas palustris BisA53 4361538 YP_782755.1 CDS RPE_3848 NC_008435.1 4300479 4301273 R TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: rpc:RPC_1894 cobalamin 5'-phosphate synthase; cobalamin 5'-phosphate synthase complement(4300479..4301273) Rhodopseudomonas palustris BisA53 4361539 YP_782756.1 CDS RPE_3849 NC_008435.1 4301502 4303013 R SMART: AAA ATPase; KEGG: mlo:mll1902 hypothetical protein; ATPase complement(4301502..4303013) Rhodopseudomonas palustris BisA53 4361540 YP_782757.1 CDS RPE_3850 NC_008435.1 4303176 4303928 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_3131 ABC transporter related; ABC transporter-like protein complement(4303176..4303928) Rhodopseudomonas palustris BisA53 4361541 YP_782758.1 CDS RPE_3851 NC_008435.1 4303925 4304695 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_3132 ABC transporter related; ABC transporter-like protein complement(4303925..4304695) Rhodopseudomonas palustris BisA53 4361542 YP_782759.1 CDS RPE_3852 NC_008435.1 4304692 4305927 R PFAM: inner-membrane translocator; KEGG: rpd:RPD_3133 inner-membrane translocator; inner-membrane translocator complement(4304692..4305927) Rhodopseudomonas palustris BisA53 4361543 YP_782760.1 CDS RPE_3853 NC_008435.1 4305932 4306939 R PFAM: inner-membrane translocator; KEGG: rpd:RPD_3134 inner-membrane translocator; inner-membrane translocator complement(4305932..4306939) Rhodopseudomonas palustris BisA53 4361544 YP_782761.1 CDS RPE_3854 NC_008435.1 4307172 4308524 R TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpc:RPC_1944 twin-arginine translocation pathway signal; ABC-type branched-chain amino acid transport systems periplasmic component complement(4307172..4308524) Rhodopseudomonas palustris BisA53 4361545 YP_782762.1 CDS RPE_3855 NC_008435.1 4308900 4309337 R PFAM: histidine triad (HIT) protein; KEGG: rpd:RPD_3136 histidine triad (HIT) protein; histidine triad (HIT) protein complement(4308900..4309337) Rhodopseudomonas palustris BisA53 4361546 YP_782763.1 CDS RPE_3856 NC_008435.1 4309821 4312109 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpb:RPB_3149 TonB-dependent receptor; TonB-dependent receptor 4309821..4312109 Rhodopseudomonas palustris BisA53 4361547 YP_782764.1 CDS RPE_3857 NC_008435.1 4312342 4313064 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA0131 putative sulfonate transport system ATP-binding protein; ABC transporter-like protein complement(4312342..4313064) Rhodopseudomonas palustris BisA53 4361548 YP_782765.1 CDS RPE_3858 NC_008435.1 4313061 4313837 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA0132 ABC sulfonate transport system, permease protein; binding-protein-dependent transport system inner membrane protein complement(4313061..4313837) Rhodopseudomonas palustris BisA53 4361549 YP_782766.1 CDS RPE_3859 NC_008435.1 4313846 4314853 R TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpa:RPA0133 ABC sulfate transport system, periplasmic binding protein; ABC-type sulfonate transport system periplasmic component complement(4313846..4314853) Rhodopseudomonas palustris BisA53 4361550 YP_782767.1 CDS RPE_3860 NC_008435.1 4315006 4316865 R TIGRFAM: hydrogenases, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; iron hydrogenase, small subunit; hydrogenase large subunit domain protein; KEGG: rpa:RPA0134 hydrogenase gamma-fused hydrogenase large and small subunit; hydrogenase, Fe-only complement(4315006..4316865) Rhodopseudomonas palustris BisA53 4361551 YP_782768.1 CDS RPE_3861 NC_008435.1 4316869 4318866 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpa:RPA0135 possible oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(4316869..4318866) Rhodopseudomonas palustris BisA53 4361552 YP_782769.1 CDS RPE_3862 NC_008435.1 4319701 4320945 D TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: rpc:RPC_1078 acetate kinase; acetate kinase 4319701..4320945 Rhodopseudomonas palustris BisA53 4361553 YP_782770.1 CDS RPE_3863 NC_008435.1 4320999 4323140 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 4320999..4323140 Rhodopseudomonas palustris BisA53 4361554 YP_782771.1 CDS RPE_3864 NC_008435.1 4323340 4324104 D KEGG: rpc:RPC_3846 hypothetical protein; hypothetical protein 4323340..4324104 Rhodopseudomonas palustris BisA53 4361555 YP_782772.1 CDS RPE_3865 NC_008435.1 4324088 4325770 D PFAM: cytochrome c oxidase, subunit II; KEGG: rpc:RPC_3849 cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II 4324088..4325770 Rhodopseudomonas palustris BisA53 4361556 YP_782773.1 CDS RPE_3866 NC_008435.1 4325767 4328292 D PFAM: cytochrome c oxidase, subunit I; KEGG: rpc:RPC_3850 cytochrome-c oxidase; cytochrome-c oxidase 4325767..4328292 Rhodopseudomonas palustris BisA53 4361557 YP_782774.1 CDS RPE_3867 NC_008435.1 4328298 4328651 D KEGG: rpc:RPC_3851 hypothetical protein; hypothetical protein 4328298..4328651 Rhodopseudomonas palustris BisA53 4361558 YP_782775.1 CDS RPE_3868 NC_008435.1 4328725 4329150 R subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit G complement(4328725..4329150) Rhodopseudomonas palustris BisA53 4361559 YP_782776.1 CDS RPE_3869 NC_008435.1 4329158 4329427 R subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit F complement(4329158..4329427) Rhodopseudomonas palustris BisA53 4361560 YP_782777.1 CDS RPE_3870 NC_008435.1 4329424 4329912 R subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit E complement(4329424..4329912) Rhodopseudomonas palustris BisA53 4361561 YP_782778.1 CDS RPE_3871 NC_008435.1 4329909 4331444 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D complement(4329909..4331444) Rhodopseudomonas palustris BisA53 4361562 YP_782779.1 CDS RPE_3872 NC_008435.1 4331441 4331809 R subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C complement(4331441..4331809) Rhodopseudomonas palustris BisA53 4361563 YP_782780.2 CDS RPE_3873 NC_008435.1 4331810 4334686 R subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; putative monovalent cation/H+ antiporter subunit A complement(4331810..4334686) Rhodopseudomonas palustris BisA53 4361564 YP_782781.1 CDS RPE_3875 NC_008435.1 4336455 4336961 D KEGG: rpc:RPC_3619 hypothetical protein; hypothetical protein 4336455..4336961 Rhodopseudomonas palustris BisA53 4361566 YP_782782.1 CDS RPE_3876 NC_008435.1 4336969 4339095 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rpc:RPC_3620 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 4336969..4339095 Rhodopseudomonas palustris BisA53 4361567 YP_782783.1 CDS RPE_3877 NC_008435.1 4339119 4339370 D hypothetical protein 4339119..4339370 Rhodopseudomonas palustris BisA53 4361568 YP_782784.1 CDS RPE_3878 NC_008435.1 4339489 4340676 R PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpd:RPD_1061 Nif-specific regulatory protein; Fis family transcriptional regulator complement(4339489..4340676) Rhodopseudomonas palustris BisA53 4361569 YP_782785.1 CDS RPE_3879 NC_008435.1 4340864 4341415 R KEGG: rru:Rru_A1390 hypothetical protein; hypothetical protein complement(4340864..4341415) Rhodopseudomonas palustris BisA53 4361570 YP_782786.1 CDS RPE_3880 NC_008435.1 4341412 4342152 R KEGG: rru:Rru_A1391 hypothetical protein; hypothetical protein complement(4341412..4342152) Rhodopseudomonas palustris BisA53 4361571 YP_782787.1 CDS RPE_3881 NC_008435.1 4342241 4343629 R PFAM: oxidoreductase/nitrogenase, component 1; KEGG: rpc:RPC_4681 nitrogenase; nitrogenase complement(4342241..4343629) Rhodopseudomonas palustris BisA53 4361572 YP_782788.1 CDS RPE_3882 NC_008435.1 4343640 4344068 R PFAM: Vanadium/alternative nitrogenase delta subunit; KEGG: rpc:RPC_4682 nitrogenase; nitrogenase complement(4343640..4344068) Rhodopseudomonas palustris BisA53 4361573 YP_782789.1 CDS RPE_3883 NC_008435.1 4344080 4345654 R KEGG: rpc:RPC_4683 nitrogenase alpha chain; TIGRFAM: nitrogenase alpha chain; nitrogenase component I, alpha chain; nitrogenase iron-iron protein, alpha chain; PFAM: oxidoreductase/nitrogenase, component 1; nitrogenase alpha chain complement(4344080..4345654) Rhodopseudomonas palustris BisA53 4361574 YP_782790.1 CDS nifH NC_008435.1 4345719 4346546 R nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; alternative NifH, may be molybdenum-independent; nitrogenase reductase complement(4345719..4346546) Rhodopseudomonas palustris BisA53 4361575 YP_782791.1 CDS RPE_3885 NC_008435.1 4347045 4348703 R PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpc:RPC_0884 transcriptional regulator, NifA subfamily, fis family; NifA subfamily transcriptional regulator complement(4347045..4348703) Rhodopseudomonas palustris BisA53 4361576 YP_782792.1 CDS RPE_3886 NC_008435.1 4348970 4349689 R KEGG: rpc:RPC_3754 hypothetical protein; hypothetical protein complement(4348970..4349689) Rhodopseudomonas palustris BisA53 4361577 YP_782793.1 CDS RPE_3887 NC_008435.1 4349748 4351247 D PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: noc:Noc_0891 transcriptional regulator, GntRfamily, with aminotransferase domain; GntR family transcriptional regulator 4349748..4351247 Rhodopseudomonas palustris BisA53 4361578 YP_782794.1 CDS RPE_3888 NC_008435.1 4351299 4352138 R PFAM: Dinitrogenase reductase ADP-ribosyltransferase; KEGG: rpa:RPA1431 putative NAD+ ADP-ribosyltransferase; NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase complement(4351299..4352138) Rhodopseudomonas palustris BisA53 4361579 YP_782795.1 CDS RPE_3889 NC_008435.1 4352493 4353485 D TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpc:RPC_1931 ABC sulfate transport system, periplasmic binding protein; ABC sulfate transport system, periplasmic binding protein 4352493..4353485 Rhodopseudomonas palustris BisA53 4361580 YP_782796.1 CDS RPE_3890 NC_008435.1 4353485 4354321 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_1932 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4353485..4354321 Rhodopseudomonas palustris BisA53 4361581 YP_782797.1 CDS RPE_3891 NC_008435.1 4354315 4355040 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_1933 ABC transporter related; ABC transporter-like protein 4354315..4355040 Rhodopseudomonas palustris BisA53 4361582 YP_782798.1 CDS RPE_3892 NC_008435.1 4355388 4356200 D PFAM: aspartate/glutamate/uridylate kinase; KEGG: rpa:RPA1442 possible uridine monophosphate kinase; aspartate/glutamate/uridylate kinase 4355388..4356200 Rhodopseudomonas palustris BisA53 4361583 YP_782799.1 CDS RPE_3893 NC_008435.1 4356214 4357041 D PFAM: aspartate/glutamate/uridylate kinase; KEGG: rpd:RPD_0592 aspartate/glutamate/uridylate kinase; aspartate/glutamate/uridylate kinase 4356214..4357041 Rhodopseudomonas palustris BisA53 4361584 YP_782800.1 CDS RPE_3894 NC_008435.1 4357376 4357942 R PFAM: cytochrome B561; KEGG: rpc:RPC_4935 cytochrome b561; cytochrome B561 complement(4357376..4357942) Rhodopseudomonas palustris BisA53 4361585 YP_782801.1 CDS RPE_3895 NC_008435.1 4357952 4358287 R KEGG: rpc:RPC_4934 hypothetical protein; hypothetical protein complement(4357952..4358287) Rhodopseudomonas palustris BisA53 4361586 YP_782802.1 CDS RPE_3896 NC_008435.1 4358385 4358714 D KEGG: rpc:RPC_4933 propeptide, PepSY amd peptidase M4; hypothetical protein 4358385..4358714 Rhodopseudomonas palustris BisA53 4361587 YP_782803.1 CDS RPE_3897 NC_008435.1 4358775 4359470 D PFAM: protein of unknown function DUF125, transmembrane; KEGG: rpa:RPA2784 possible nodulin-related protein; hypothetical protein 4358775..4359470 Rhodopseudomonas palustris BisA53 4361588 YP_782804.1 CDS RPE_3898 NC_008435.1 4359964 4361298 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: rpc:RPC_2762 ferric reductase-like transmembrane component-like; ferric reductase domain-containing protein complement(4359964..4361298) Rhodopseudomonas palustris BisA53 4361589 YP_782805.1 CDS RPE_3899 NC_008435.1 4361445 4361687 D hypothetical protein 4361445..4361687 Rhodopseudomonas palustris BisA53 4361590 YP_782806.1 CDS RPE_3900 NC_008435.1 4361651 4362250 R KEGG: bja:bll7551 hypothetical protein; hypothetical protein complement(4361651..4362250) Rhodopseudomonas palustris BisA53 4361591 YP_782807.1 CDS RPE_3901 NC_008435.1 4362378 4362851 R KEGG: rpa:RPA2786 hypothetical protein; hypothetical protein complement(4362378..4362851) Rhodopseudomonas palustris BisA53 4361592 YP_782808.1 CDS RPE_3902 NC_008435.1 4362928 4363092 R KEGG: rpc:RPC_3684 hypothetical protein; hypothetical protein complement(4362928..4363092) Rhodopseudomonas palustris BisA53 4361593 YP_782809.1 CDS RPE_3903 NC_008435.1 4364256 4364531 D PFAM: CsbD family protein; KEGG: hch:HCH_05492 hypothetical protein; CsbD family protein 4364256..4364531 Rhodopseudomonas palustris BisA53 4361594 YP_782810.1 CDS RPE_3904 NC_008435.1 4365201 4366697 R KEGG: pfo:Pfl_2556 GCN5-related N-acetyltransferase; putative anti-sigma regulatory factor complement(4365201..4366697) Rhodopseudomonas palustris BisA53 4361595 YP_782811.1 CDS RPE_3905 NC_008435.1 4366694 4369411 R KEGG: cvi:CV4319 hypothetical protein; coenzyme F390 synthetase-like protein complement(4366694..4369411) Rhodopseudomonas palustris BisA53 4361596 YP_782812.1 CDS RPE_3906 NC_008435.1 4369427 4370566 R PFAM: acyl-protein synthetase, LuxE; KEGG: cvi:CV4318 long-chain-fatty-acid--luciferin-component ligase, acyl-protein synthase; acyl-protein synthetase, LuxE complement(4369427..4370566) Rhodopseudomonas palustris BisA53 4361597 YP_782813.1 CDS RPE_3907 NC_008435.1 4370563 4371867 R KEGG: cvi:CV4319 hypothetical protein; coenzyme F390 synthetase-like protein complement(4370563..4371867) Rhodopseudomonas palustris BisA53 4361598 YP_782814.1 CDS RPE_3908 NC_008435.1 4371869 4373236 R KEGG: gvi:gll2007 putative phenylacetate-CoA ligase; putative phenylacetate-CoA ligase complement(4371869..4373236) Rhodopseudomonas palustris BisA53 4361599 YP_782815.1 CDS RPE_3909 NC_008435.1 4373291 4374589 R PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO2046 integral membrane efflux protein; major facilitator transporter complement(4373291..4374589) Rhodopseudomonas palustris BisA53 4361600 YP_782816.1 CDS RPE_3910 NC_008435.1 4374909 4375241 D TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: plt:Plut_1039 anti-anti-sigma regulatory factor, SpoIIAA; anti-sigma-factor antagonist 4374909..4375241 Rhodopseudomonas palustris BisA53 4361601 YP_782817.1 CDS RPE_3911 NC_008435.1 4375243 4375689 D PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: sat:SYN_02357 anti-sigma regulatory factor; putative anti-sigma regulatory factor 4375243..4375689 Rhodopseudomonas palustris BisA53 4361602 YP_782818.1 CDS RPE_3912 NC_008435.1 4375686 4376678 D KEGG: sat:SYN_02358 ABC transporter substrate-binding protein; ABC transporter substrate-binding protein 4375686..4376678 Rhodopseudomonas palustris BisA53 4361603 YP_782819.1 CDS RPE_3913 NC_008435.1 4376665 4378590 D PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sat:SYN_02359 serine phosphatase RsbU, regulator of sigma subunit; serine phosphatase 4376665..4378590 Rhodopseudomonas palustris BisA53 4361604 YP_782820.1 CDS RPE_3914 NC_008435.1 4379303 4380736 D PFAM: aldehyde dehydrogenase; KEGG: rpc:RPC_3791 aldehyde dehydrogenase; aldehyde dehydrogenase 4379303..4380736 Rhodopseudomonas palustris BisA53 4361606 YP_782821.1 CDS RPE_3915 NC_008435.1 4380835 4382442 D PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: rpb:RPB_3847 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase 4380835..4382442 Rhodopseudomonas palustris BisA53 4361607 YP_782822.1 CDS RPE_3916 NC_008435.1 4382591 4383352 R PFAM: short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: rpc:RPC_3793 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(4382591..4383352) Rhodopseudomonas palustris BisA53 4361608 YP_782823.1 CDS RPE_3917 NC_008435.1 4383472 4383987 D PFAM: Colicin V production protein; KEGG: rpc:RPC_3794 colicin V production protein; colicin V production protein 4383472..4383987 Rhodopseudomonas palustris BisA53 4361609 YP_782824.1 CDS RPE_3918 NC_008435.1 4384114 4384896 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpb:RPB_3849 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 4384114..4384896 Rhodopseudomonas palustris BisA53 4361610 YP_782825.1 CDS RPE_3919 NC_008435.1 4384956 4385588 R PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: rpc:RPC_3796 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(4384956..4385588) Rhodopseudomonas palustris BisA53 4361611 YP_782826.1 CDS RPE_3920 NC_008435.1 4385861 4386904 D PFAM: Uncharacterized protein UPF0065; KEGG: rpc:RPC_3797 uncharacterized protein UPF0065; hypothetical protein 4385861..4386904 Rhodopseudomonas palustris BisA53 4361612 YP_782827.1 CDS RPE_3921 NC_008435.1 4386990 4389527 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: rpc:RPC_3798 multi-sensor hybrid histidine kinase; multi-sensor hybrid histidine kinase 4386990..4389527 Rhodopseudomonas palustris BisA53 4361613 YP_782828.1 CDS RPE_3922 NC_008435.1 4389578 4390828 R PFAM: EAL domain protein; response regulator receiver; KEGG: rpc:RPC_3799 response regulator receiver (CheY-like) modulated diguanylate phosphodiesterase (EAL domain); response regulator receiver modulated diguanylate phosphodiesterase complement(4389578..4390828) Rhodopseudomonas palustris BisA53 4361614 YP_782829.1 CDS RPE_3923 NC_008435.1 4390975 4391286 R KEGG: rpc:RPC_3800 hypothetical protein; hypothetical protein complement(4390975..4391286) Rhodopseudomonas palustris BisA53 4361615 YP_782830.1 CDS RPE_3924 NC_008435.1 4391302 4392183 R PFAM: MCP methyltransferase, CheR-type; KEGG: rpc:RPC_3801 MCP methyltransferase, CheR-type; chemotaxis protein CheR complement(4391302..4392183) Rhodopseudomonas palustris BisA53 4361616 YP_782831.1 CDS RPE_3925 NC_008435.1 4392237 4392728 R PFAM: CheW domain protein; KEGG: rpc:RPC_3802 CheW protein; CheW protein complement(4392237..4392728) Rhodopseudomonas palustris BisA53 4361617 YP_782832.1 CDS RPE_3926 NC_008435.1 4392734 4395556 R PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rpc:RPC_3803 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase complement(4392734..4395556) Rhodopseudomonas palustris BisA53 4361618 YP_782833.1 CDS RPE_3927 NC_008435.1 4395715 4396068 R KEGG: bja:blr2933 probable aerotaxis receptor; hypothetical protein complement(4395715..4396068) Rhodopseudomonas palustris BisA53 4361619 YP_782834.1 CDS RPE_3928 NC_008435.1 4396291 4398309 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpb:RPB_2250 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(4396291..4398309) Rhodopseudomonas palustris BisA53 4361620 YP_782835.1 CDS RPE_3929 NC_008435.1 4398558 4400525 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_3804 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(4398558..4400525) Rhodopseudomonas palustris BisA53 4361621 YP_782836.1 CDS RPE_3930 NC_008435.1 4400761 4401264 R PFAM: response regulator receiver; KEGG: rpc:RPC_3805 response regulator receiver domain protein (CheY-like); response regulator receiver protein complement(4400761..4401264) Rhodopseudomonas palustris BisA53 4361622 YP_782837.1 CDS RPE_3931 NC_008435.1 4402072 4402722 D PFAM: transport-associated; KEGG: rpc:RPC_3808 transport-associated; transport-associated protein 4402072..4402722 Rhodopseudomonas palustris BisA53 4361623 YP_782838.1 CDS RPE_3932 NC_008435.1 4402807 4404255 R PFAM: protein kinase; UspA domain protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rpc:RPC_3809 serine/threonine protein kinase; serine/threonine protein kinase complement(4402807..4404255) Rhodopseudomonas palustris BisA53 4361624 YP_782839.1 CDS RPE_3933 NC_008435.1 4404258 4404998 R PFAM: metallophosphoesterase; KEGG: rpc:RPC_3810 metallophosphoesterase; metallophosphoesterase complement(4404258..4404998) Rhodopseudomonas palustris BisA53 4361625 YP_782840.1 CDS RPE_3934 NC_008435.1 4405286 4405714 D KEGG: rpc:RPC_3811 hypothetical protein; hypothetical protein 4405286..4405714 Rhodopseudomonas palustris BisA53 4361626 YP_782841.1 CDS RPE_3935 NC_008435.1 4405974 4407656 D KEGG: rpd:RPD_1487 magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; TIGRFAM: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase 4405974..4407656 Rhodopseudomonas palustris BisA53 4361627 YP_782842.1 CDS RPE_3936 NC_008435.1 4407667 4408389 D TIGRFAM: bacteriochlorophyll 4-vinyl reductase; PFAM: 4-vinyl reductase, 4VR; KEGG: rpc:RPC_3813 bacteriochlorophyll 4-vinyl reductase; bacteriochlorophyll 4-vinyl reductase 4407667..4408389 Rhodopseudomonas palustris BisA53 4361628 YP_782843.1 CDS RPE_3937 NC_008435.1 4408432 4409784 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4408432..4409784 Rhodopseudomonas palustris BisA53 4361629 YP_782844.1 CDS RPE_3938 NC_008435.1 4410043 4410330 D KEGG: rpc:RPC_3815 hypothetical protein; hypothetical protein 4410043..4410330 Rhodopseudomonas palustris BisA53 4361630 YP_782845.1 CDS RPE_3939 NC_008435.1 4410513 4411196 D KEGG: rpc:RPC_3816 hypothetical protein; hypothetical protein 4410513..4411196 Rhodopseudomonas palustris BisA53 4361631 YP_782846.1 CDS RPE_3940 NC_008435.1 4411206 4411481 R PFAM: protein of unknown function DUF156; KEGG: rpc:RPC_3817 protein of unknown function DUF156; hypothetical protein complement(4411206..4411481) Rhodopseudomonas palustris BisA53 4361632 YP_782847.1 CDS RPE_3941 NC_008435.1 4411554 4414340 D KEGG: rpc:RPC_3818 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; heavy metal translocating P-type ATPase 4411554..4414340 Rhodopseudomonas palustris BisA53 4361633 YP_782848.1 CDS RPE_3942 NC_008435.1 4414534 4415115 D PFAM: Hemerythrin HHE cation binding domain protein; KEGG: rpc:RPC_3819 hemerythrin HHE cation binding region; hemerythrin HHE cation binding domain-containing protein 4414534..4415115 Rhodopseudomonas palustris BisA53 4361634 YP_782849.1 CDS RPE_3943 NC_008435.1 4415305 4415661 R PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: rpc:RPC_3820 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; putative 6-pyruvoyl tetrahydropterin synthase complement(4415305..4415661) Rhodopseudomonas palustris BisA53 4361635 YP_782850.1 CDS RPE_3944 NC_008435.1 4416006 4417208 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_3822 diguanylate cyclase (GGDEF domain); diguanylate cyclase 4416006..4417208 Rhodopseudomonas palustris BisA53 4361636 YP_782851.1 CDS RPE_3945 NC_008435.1 4417240 4417860 D SMART: N-acetylmuramoyl-L-alanine amidase, family 2; N-acetylmuramoyl-L-alanine amidase 4417240..4417860 Rhodopseudomonas palustris BisA53 4361637 YP_782852.1 CDS RPE_3946 NC_008435.1 4418076 4418447 D KEGG: rpd:RPD_1472 hypothetical protein; hypothetical protein 4418076..4418447 Rhodopseudomonas palustris BisA53 4361638 YP_782853.1 CDS RPE_3947 NC_008435.1 4418565 4418867 D hypothetical protein 4418565..4418867 Rhodopseudomonas palustris BisA53 4361639 YP_782854.1 CDS RPE_3948 NC_008435.1 4418873 4419313 R KEGG: nha:Nham_4512 hypothetical protein; hypothetical protein complement(4418873..4419313) Rhodopseudomonas palustris BisA53 4361640 YP_782855.1 CDS RPE_3949 NC_008435.1 4419320 4419580 R TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: nha:Nham_4513 prevent-host-death protein; prevent-host-death family protein complement(4419320..4419580) Rhodopseudomonas palustris BisA53 4361641 YP_782856.1 CDS RPE_3950 NC_008435.1 4419796 4420155 D KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein; putative insertion sequence transposase protein 4419796..4420155 Rhodopseudomonas palustris BisA53 4361642 YP_782857.1 CDS RPE_3951 NC_008435.1 4420232 4420744 D KEGG: ret:RHE_PB00142 probable insertion sequence transposase protein; putative insertion sequence transposase protein 4420232..4420744 Rhodopseudomonas palustris BisA53 4361643 YP_782858.1 CDS RPE_3952 NC_008435.1 4420756 4421433 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA1650 putative ABC transporter, ATP-binding protein; ABC transporter-like protein complement(4420756..4421433) Rhodopseudomonas palustris BisA53 4361644 YP_782859.1 CDS RPE_3953 NC_008435.1 4421426 4422652 R PFAM: protein of unknown function DUF214; KEGG: rpa:RPA1649 predicted ABC-type transport systems, involved in lipoprotein release, permease components; hypothetical protein complement(4421426..4422652) Rhodopseudomonas palustris BisA53 4361645 YP_782860.1 CDS RPE_3954 NC_008435.1 4422649 4423926 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rpd:RPD_1469 secretion protein HlyD; RND family efflux transporter MFP subunit complement(4422649..4423926) Rhodopseudomonas palustris BisA53 4361646 YP_782861.1 CDS RPE_3955 NC_008435.1 4424126 4425097 D PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_3829 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 4424126..4425097 Rhodopseudomonas palustris BisA53 4361647 YP_782862.1 CDS RPE_3956 NC_008435.1 4425450 4425695 D KEGG: rpb:RPB_3885 hypothetical protein; hypothetical protein 4425450..4425695 Rhodopseudomonas palustris BisA53 4361648 YP_782863.1 CDS RPE_3957 NC_008435.1 4425815 4426318 D KEGG: rpc:RPC_3831 hypothetical protein; hypothetical protein 4425815..4426318 Rhodopseudomonas palustris BisA53 4361649 YP_782864.1 CDS RPE_3958 NC_008435.1 4426465 4426878 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B complement(4426465..4426878) Rhodopseudomonas palustris BisA53 4361650 YP_782865.1 CDS RPE_3959 NC_008435.1 4426910 4427623 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(4426910..4427623) Rhodopseudomonas palustris BisA53 4361651 YP_782866.1 CDS carB NC_008435.1 4428232 4431561 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 4428232..4431561 Rhodopseudomonas palustris BisA53 4361652 YP_782867.1 CDS greA NC_008435.1 4431782 4432264 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 4431782..4432264 Rhodopseudomonas palustris BisA53 4361653 YP_782868.1 CDS RPE_3962 NC_008435.1 4432439 4432855 D PFAM: DoxX family protein; KEGG: rpb:RPB_1514 DoxX; DoxX family protein 4432439..4432855 Rhodopseudomonas palustris BisA53 4361654 YP_782869.1 CDS RPE_3963 NC_008435.1 4432852 4433328 R PFAM: regulatory protein, AsnC/Lrp family; KEGG: rpc:RPC_3837 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(4432852..4433328) Rhodopseudomonas palustris BisA53 4361655 YP_782870.1 CDS RPE_3964 NC_008435.1 4433588 4434553 D TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: rpc:RPC_3838 thioredoxin reductase; thioredoxin reductase 4433588..4434553 Rhodopseudomonas palustris BisA53 4361656 YP_782871.1 CDS RPE_3965 NC_008435.1 4434556 4435479 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_3839 transcriptional regulator, LysR family; LysR family transcriptional regulator 4434556..4435479 Rhodopseudomonas palustris BisA53 4361657 YP_782872.1 CDS RPE_3966 NC_008435.1 4435828 4436508 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rpc:RPC_3840 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(4435828..4436508) Rhodopseudomonas palustris BisA53 4361658 YP_782873.1 CDS RPE_3967 NC_008435.1 4436675 4437016 R KEGG: nwi:Nwi_2456 hypothetical protein; hypothetical protein complement(4436675..4437016) Rhodopseudomonas palustris BisA53 4361659 YP_782874.1 CDS RPE_3968 NC_008435.1 4437198 4437551 R KEGG: rpb:RPB_1508 hypothetical protein; hypothetical protein complement(4437198..4437551) Rhodopseudomonas palustris BisA53 4361660 YP_782875.1 CDS RPE_3969 NC_008435.1 4437622 4437915 R KEGG: rpb:RPB_1507 hypothetical protein; hypothetical protein complement(4437622..4437915) Rhodopseudomonas palustris BisA53 4361661 YP_782876.1 CDS RPE_3970 NC_008435.1 4438170 4438769 D PFAM: GPR1/FUN34/yaaH family protein; KEGG: ade:Adeh_0724 GPR1/FUN34/YaaH; GPR1/FUN34/yaaH family protein 4438170..4438769 Rhodopseudomonas palustris BisA53 4361662 YP_782877.1 CDS RPE_3971 NC_008435.1 4438815 4439366 D PFAM: Cache, type 2 domain protein; KEGG: ade:Adeh_3161 cache domain protein; cache type 2 domain-containing protein 4438815..4439366 Rhodopseudomonas palustris BisA53 4361663 YP_782878.1 CDS RPE_3972 NC_008435.1 4439525 4441372 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_2389 ABC transporter related; ABC transporter-like protein complement(4439525..4441372) Rhodopseudomonas palustris BisA53 4361664 YP_782879.1 CDS RPE_3973 NC_008435.1 4441545 4441940 D KEGG: rpd:RPD_2388 hypothetical protein; hypothetical protein 4441545..4441940 Rhodopseudomonas palustris BisA53 4361665 YP_782880.1 CDS RPE_3974 NC_008435.1 4441946 4442374 R KEGG: rpd:RPD_2387 hypothetical protein; hypothetical protein complement(4441946..4442374) Rhodopseudomonas palustris BisA53 4361666 YP_782881.1 CDS RPE_3975 NC_008435.1 4442593 4442967 R KEGG: rpc:RPC_1925 hypothetical protein; hypothetical protein complement(4442593..4442967) Rhodopseudomonas palustris BisA53 4361667 YP_782882.1 CDS RPE_3976 NC_008435.1 4442961 4443575 R TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: rpd:RPD_2384 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase complement(4442961..4443575) Rhodopseudomonas palustris BisA53 4361668 YP_782883.1 CDS RPE_3977 NC_008435.1 4443694 4444230 R TIGRFAM: Twin-arginine translocation pathway signal; ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: rpc:RPC_1923 ubiquinol-cytochrome c reductase, iron-sulfur subunit; ubiquinol-cytochrome c reductase, iron-sulfur subunit complement(4443694..4444230) Rhodopseudomonas palustris BisA53 4361669 YP_782884.1 CDS RPE_3978 NC_008435.1 4444316 4444921 R PFAM: transcriptional regulator PadR family protein; KEGG: rpc:RPC_3227 transcriptional regulator, PadR-like family; PadR-like family transcriptional regulator complement(4444316..4444921) Rhodopseudomonas palustris BisA53 4361670 YP_782885.1 CDS RPE_3979 NC_008435.1 4445101 4446027 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_1922 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4445101..4446027) Rhodopseudomonas palustris BisA53 4361671 YP_782886.1 CDS RPE_3980 NC_008435.1 4446130 4447020 D PFAM: beta-lactamase domain protein; KEGG: rpc:RPC_1921 beta-lactamase-like; beta-lactamase domain-containing protein 4446130..4447020 Rhodopseudomonas palustris BisA53 4361672 YP_782887.1 CDS RPE_3981 NC_008435.1 4447056 4447781 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rpc:RPC_1920 peroxidase; peroxidase 4447056..4447781 Rhodopseudomonas palustris BisA53 4361673 YP_782888.1 CDS RPE_3982 NC_008435.1 4447878 4448666 D PFAM: protein of unknown function DUF81; KEGG: rpc:RPC_1919 protein of unknown function DUF81; hypothetical protein 4447878..4448666 Rhodopseudomonas palustris BisA53 4361674 YP_782889.1 CDS RPE_3983 NC_008435.1 4448703 4449176 R PFAM: thioesterase superfamily protein; KEGG: rpd:RPD_2382 thioesterase superfamily; thioesterase superfamily protein complement(4448703..4449176) Rhodopseudomonas palustris BisA53 4361675 YP_782890.1 CDS RPE_3984 NC_008435.1 4449322 4449696 R KEGG: rpd:RPD_2381 hypothetical protein; hypothetical protein complement(4449322..4449696) Rhodopseudomonas palustris BisA53 4361676 YP_782891.1 CDS RPE_3985 NC_008435.1 4449709 4451025 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpd:RPD_2380 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(4449709..4451025) Rhodopseudomonas palustris BisA53 4361677 YP_782892.1 CDS RPE_3986 NC_008435.1 4451779 4452906 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpc:RPC_1938 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 4451779..4452906 Rhodopseudomonas palustris BisA53 4361678 YP_782893.1 CDS RPE_3987 NC_008435.1 4452945 4456010 R PFAM: acriflavin resistance protein; KEGG: rpc:RPC_3023 acriflavin resistance protein; acriflavin resistance protein complement(4452945..4456010) Rhodopseudomonas palustris BisA53 4361679 YP_782894.1 CDS RPE_3988 NC_008435.1 4456007 4457098 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rpc:RPC_3024 secretion protein HlyD; RND family efflux transporter MFP subunit complement(4456007..4457098) Rhodopseudomonas palustris BisA53 4361680 YP_782895.1 CDS RPE_3989 NC_008435.1 4457348 4458064 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_3025 two component transcriptional regulator, winged helix family; two component transcriptional regulator 4457348..4458064 Rhodopseudomonas palustris BisA53 4361681 YP_782896.1 CDS RPE_3990 NC_008435.1 4458103 4459296 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_3026 histidine kinase; histidine kinase 4458103..4459296 Rhodopseudomonas palustris BisA53 4361682 YP_782897.1 CDS RPE_3991 NC_008435.1 4459392 4460705 R PFAM: Patatin; KEGG: rpc:RPC_3027 patatin; patatin complement(4459392..4460705) Rhodopseudomonas palustris BisA53 4361683 YP_782898.1 CDS RPE_3992 NC_008435.1 4460848 4461939 R KEGG: rpc:RPC_3028 hypothetical protein; hypothetical protein complement(4460848..4461939) Rhodopseudomonas palustris BisA53 4361684 YP_782899.1 CDS RPE_3993 NC_008435.1 4462125 4462841 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_3029 two component transcriptional regulator, winged helix family; two component transcriptional regulator 4462125..4462841 Rhodopseudomonas palustris BisA53 4361685 YP_782900.1 CDS RPE_3994 NC_008435.1 4463112 4464341 D PFAM: phage integrase family protein; KEGG: rpa:RPA4082 possible phage-like integrase; phage integrase family protein 4463112..4464341 Rhodopseudomonas palustris BisA53 4361686 YP_782901.1 CDS RPE_3995 NC_008435.1 4464475 4464969 R KEGG: mca:MCA2964 ISMca1, transposase; hypothetical protein complement(4464475..4464969) Rhodopseudomonas palustris BisA53 4361687 YP_782902.1 CDS RPE_3996 NC_008435.1 4465349 4466173 R hypothetical protein complement(4465349..4466173) Rhodopseudomonas palustris BisA53 4361688 YP_782903.1 CDS RPE_3997 NC_008435.1 4466178 4467731 R KEGG: bpa:BPP0921 hypothetical protein; hypothetical protein complement(4466178..4467731) Rhodopseudomonas palustris BisA53 4361689 YP_782904.1 CDS RPE_3998 NC_008435.1 4467741 4470149 R hypothetical protein complement(4467741..4470149) Rhodopseudomonas palustris BisA53 4361690 YP_782905.1 CDS RPE_3999 NC_008435.1 4470146 4473208 R hypothetical protein complement(4470146..4473208) Rhodopseudomonas palustris BisA53 4361691 YP_782906.1 CDS RPE_4000 NC_008435.1 4473205 4474446 R PFAM: peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6, chymotrypsin/Hap complement(4473205..4474446) Rhodopseudomonas palustris BisA53 4361692 YP_782907.1 CDS RPE_4001 NC_008435.1 4474655 4475353 D KEGG: mca:MCA2145 hypothetical protein; hypothetical protein 4474655..4475353 Rhodopseudomonas palustris BisA53 4361693 YP_782908.1 CDS RPE_4002 NC_008435.1 4475475 4475951 D KEGG: tcr:506491.20 myosin heavy chain Pfam: DUF593 PCEMA1 DUF827 Fibrinogen_BP TolA Vicilin_N Myosin_tail_1 CASP_C GBP_C Erp_C Laminin_I PROSITE: GLU_RICH; hypothetical protein 4475475..4475951 Rhodopseudomonas palustris BisA53 4361694 YP_782909.1 CDS RPE_4003 NC_008435.1 4476103 4477347 D hypothetical protein 4476103..4477347 Rhodopseudomonas palustris BisA53 4361695 YP_782910.1 CDS RPE_4004 NC_008435.1 4477344 4478327 D hypothetical protein 4477344..4478327 Rhodopseudomonas palustris BisA53 4361696 YP_782911.1 CDS RPE_4005 NC_008435.1 4478624 4479958 D KEGG: rpc:RPC_1771 putative transposase; putative transposase 4478624..4479958 Rhodopseudomonas palustris BisA53 4361697 YP_782912.1 CDS RPE_4006 NC_008435.1 4480159 4480713 R KEGG: afm:Afu3g07390 hypothetical protein; hypothetical protein complement(4480159..4480713) Rhodopseudomonas palustris BisA53 4361698 YP_782913.1 CDS RPE_4007 NC_008435.1 4480856 4486645 R KEGG: gme:Gmet_1193 hypothetical protein; hypothetical protein complement(4480856..4486645) Rhodopseudomonas palustris BisA53 4361699 YP_782914.1 CDS RPE_4008 NC_008435.1 4486642 4495791 R TIGRFAM: Twin-arginine translocation pathway signal; KEGG: gme:Gmet_1194 hypothetical protein; hypothetical protein complement(4486642..4495791) Rhodopseudomonas palustris BisA53 4361700 YP_782915.1 CDS RPE_4009 NC_008435.1 4496238 4496477 D hypothetical protein 4496238..4496477 Rhodopseudomonas palustris BisA53 4361701 YP_782916.1 CDS RPE_4010 NC_008435.1 4496450 4496692 R KEGG: rpc:RPC_3891 hypothetical protein; hypothetical protein complement(4496450..4496692) Rhodopseudomonas palustris BisA53 4361702 YP_782917.1 CDS RPE_4011 NC_008435.1 4496702 4496959 R PFAM: conjugation TrbI family protein; KEGG: rpc:RPC_3892 conjugation TrbI-like protein; conjugation TrbI family protein complement(4496702..4496959) Rhodopseudomonas palustris BisA53 4361703 YP_782918.1 CDS RPE_4012 NC_008435.1 4497004 4498590 R PFAM: transposase IS66; KEGG: mag:amb3325 transposase and inactivated derivative; transposase IS66 complement(4497004..4498590) Rhodopseudomonas palustris BisA53 4361704 YP_782919.1 CDS RPE_4013 NC_008435.1 4498664 4499011 R PFAM: IS66 Orf2 family protein; KEGG: mag:amb0402 transposase and inactivated derivative; IS66 Orf2 family protein complement(4498664..4499011) Rhodopseudomonas palustris BisA53 4361705 YP_782920.1 CDS RPE_4014 NC_008435.1 4499008 4499346 R PFAM: transposase IS3/IS911 family protein; KEGG: bja:blr0034 putative transposase; transposase IS3/IS911 family protein complement(4499008..4499346) Rhodopseudomonas palustris BisA53 4361706 YP_782921.1 CDS RPE_4015 NC_008435.1 4499351 4500454 R PFAM: conjugation TrbI family protein; KEGG: rpc:RPC_3892 conjugation TrbI-like protein; conjugation TrbI family protein complement(4499351..4500454) Rhodopseudomonas palustris BisA53 4361707 YP_782922.1 CDS RPE_4016 NC_008435.1 4500451 4501455 R PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: rpc:RPC_3893 conjugal transfer protein TrbG/VirB9/CagX; conjugal transfer protein TrbG/VirB9/CagX complement(4500451..4501455) Rhodopseudomonas palustris BisA53 4361708 YP_782923.1 CDS RPE_4017 NC_008435.1 4501452 4502132 R PFAM: Conjugal transfer protein; KEGG: rpc:RPC_3894 conjugal transfer protein; conjugal transfer protein TrbF complement(4501452..4502132) Rhodopseudomonas palustris BisA53 4361709 YP_782924.1 CDS RPE_4018 NC_008435.1 4502132 4503307 R type IV secretion VirB6 family; conjugal transfer protein TrbL complement(4502132..4503307) Rhodopseudomonas palustris BisA53 4361710 YP_782925.1 CDS RPE_4019 NC_008435.1 4503307 4503672 R KEGG: rpc:RPC_3896 hypothetical protein; hypothetical protein complement(4503307..4503672) Rhodopseudomonas palustris BisA53 4361711 YP_782926.1 CDS RPE_4020 NC_008435.1 4503669 4504397 R KEGG: rpc:RPC_3897 putative conjugal transfer protein TrbJ; conjugal transfer protein TrbJ complement(4503669..4504397) Rhodopseudomonas palustris BisA53 4361712 YP_782927.1 CDS RPE_4021 NC_008435.1 4504394 4506835 R type IV secretion system VirB4 family; conjugal transfer ATPase TrbE complement(4504394..4506835) Rhodopseudomonas palustris BisA53 4361713 YP_782928.1 CDS RPE_4022 NC_008435.1 4506860 4507141 R PFAM: type IV secretory pathway, VirB3 family protein; KEGG: rpc:RPC_3899 type IV secretory pathway, VirB3-like; type IV secretory pathway, VirB3 family protein complement(4506860..4507141) Rhodopseudomonas palustris BisA53 4361714 YP_782929.1 CDS RPE_4023 NC_008435.1 4507141 4507470 R PFAM: Conjugal transfer protein TrbC; KEGG: rpc:RPC_3900 conjugal transfer protein TrbC; conjugal transfer protein TrbC complement(4507141..4507470) Rhodopseudomonas palustris BisA53 4361715 YP_782930.1 CDS RPE_4024 NC_008435.1 4507467 4508435 R PFAM: type II secretion system protein E; KEGG: rpc:RPC_3901 type II secretion system protein E; type II secretion system protein E complement(4507467..4508435) Rhodopseudomonas palustris BisA53 4361716 YP_782931.1 CDS RPE_4025 NC_008435.1 4508574 4509014 R KEGG: rpc:RPC_3902 hypothetical protein; hypothetical protein complement(4508574..4509014) Rhodopseudomonas palustris BisA53 4361717 YP_782932.1 CDS RPE_4026 NC_008435.1 4509023 4511020 R type IV secretion VirD4 coupling protein family; conjugal transfer coupling protein TraG complement(4509023..4511020) Rhodopseudomonas palustris BisA53 4361718 YP_782933.1 CDS RPE_4027 NC_008435.1 4511146 4512897 R KEGG: rpc:RPC_3904 hypothetical protein; hypothetical protein complement(4511146..4512897) Rhodopseudomonas palustris BisA53 4361719 YP_782934.1 CDS RPE_4028 NC_008435.1 4512894 4513148 R hypothetical protein complement(4512894..4513148) Rhodopseudomonas palustris BisA53 4361720 YP_782935.1 CDS RPE_4029 NC_008435.1 4513145 4514053 R PFAM: Lytic transglycosylase, catalytic; KEGG: rpc:RPC_3905 lytic transglycosylase, catalytic; lytic transglycosylase complement(4513145..4514053) Rhodopseudomonas palustris BisA53 4361721 YP_782936.1 CDS RPE_4030 NC_008435.1 4514053 4514568 R KEGG: rpc:RPC_3906 conjugal transfer protein precursor; conjugal transfer protein complement(4514053..4514568) Rhodopseudomonas palustris BisA53 4361722 YP_782937.1 CDS RPE_4031 NC_008435.1 4514565 4515029 R KEGG: rpc:RPC_3907 hypothetical protein; hypothetical protein complement(4514565..4515029) Rhodopseudomonas palustris BisA53 4361723 YP_782938.1 CDS RPE_4032 NC_008435.1 4515342 4516229 R KEGG: rpc:RPC_3908 putative replication protein A; putative replication protein A complement(4515342..4516229) Rhodopseudomonas palustris BisA53 4361724 YP_782939.1 CDS RPE_4033 NC_008435.1 4516247 4516531 R KEGG: rpc:RPC_3909 putative transcriptional regulator; putative transcriptional regulator complement(4516247..4516531) Rhodopseudomonas palustris BisA53 4361725 YP_782940.1 CDS RPE_4034 NC_008435.1 4516658 4517236 R KEGG: rpc:RPC_3911 hypothetical protein; hypothetical protein complement(4516658..4517236) Rhodopseudomonas palustris BisA53 4361726 YP_782941.1 CDS RPE_4035 NC_008435.1 4517244 4517474 R KEGG: rpc:RPC_3912 hypothetical protein; hypothetical protein complement(4517244..4517474) Rhodopseudomonas palustris BisA53 4361727 YP_782942.1 CDS RPE_4036 NC_008435.1 4517593 4517871 R KEGG: rpc:RPC_3913 hypothetical protein; hypothetical protein complement(4517593..4517871) Rhodopseudomonas palustris BisA53 4361728 YP_782943.1 CDS RPE_4037 NC_008435.1 4518025 4518279 D PFAM: helix-turn-helix domain protein; KEGG: rpc:RPC_3914 transcriptional regulator, XRE family; XRE family transcriptional regulator 4518025..4518279 Rhodopseudomonas palustris BisA53 4361729 YP_782944.1 CDS RPE_4038 NC_008435.1 4518431 4518754 R PFAM: protein of unknown function DUF736; KEGG: rpc:RPC_3915 protein of unknown function DUF736; hypothetical protein complement(4518431..4518754) Rhodopseudomonas palustris BisA53 4361730 YP_782945.1 CDS RPE_4039 NC_008435.1 4519324 4519974 R KEGG: rpc:RPC_3916 hypothetical protein; hypothetical protein complement(4519324..4519974) Rhodopseudomonas palustris BisA53 4361731 YP_782946.1 CDS RPE_4040 NC_008435.1 4519990 4520973 R KEGG: rpc:RPC_3917 hypothetical protein; hypothetical protein complement(4519990..4520973) Rhodopseudomonas palustris BisA53 4361732 YP_782947.1 CDS RPE_4041 NC_008435.1 4521266 4522297 R KEGG: rpc:RPC_3918 hypothetical protein; hypothetical protein complement(4521266..4522297) Rhodopseudomonas palustris BisA53 4361733 YP_782948.1 CDS RPE_4042 NC_008435.1 4522294 4526673 R KEGG: rpc:RPC_3919 probably methylase/helicase; methylase/helicase complement(4522294..4526673) Rhodopseudomonas palustris BisA53 4361734 YP_782949.1 CDS RPE_4043 NC_008435.1 4526839 4528950 R PFAM: ParB domain protein nuclease; KEGG: rpc:RPC_3920 ParB-like nuclease; nuclease complement(4526839..4528950) Rhodopseudomonas palustris BisA53 4361735 YP_782950.1 CDS RPE_4044 NC_008435.1 4529078 4530028 R PFAM: domain of unknown function DUF1738; KEGG: rpc:RPC_3921 antirestriction protein; ArdC; hypothetical protein complement(4529078..4530028) Rhodopseudomonas palustris BisA53 4361736 YP_782951.1 CDS RPE_4045 NC_008435.1 4530380 4530679 D PFAM: histone family protein DNA-binding protein; KEGG: rpc:RPC_3750 histone-like DNA-binding protein; histone family protein DNA-binding protein 4530380..4530679 Rhodopseudomonas palustris BisA53 4361737 YP_782952.1 CDS RPE_4046 NC_008435.1 4530797 4531744 D KEGG: ret:RHE_PF00101 putative aminotransferase protein; putative aminotransferase protein 4530797..4531744 Rhodopseudomonas palustris BisA53 4361738 YP_782953.1 CDS RPE_4047 NC_008435.1 4531744 4535439 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: psb:Psyr_5115 helicase, C-terminal:DEAD/DEAH box helicase, N-terminal; DEAD/DEAH box helicase 4531744..4535439 Rhodopseudomonas palustris BisA53 4361739 YP_782954.1 CDS RPE_4048 NC_008435.1 4535486 4535872 R PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: nha:Nham_3765 DNA polymerase III, alpha subunit; nucleic acid binding, OB-fold, tRNA/helicase-type complement(4535486..4535872) Rhodopseudomonas palustris BisA53 4361740 YP_782955.1 CDS RPE_4049 NC_008435.1 4536306 4537319 R KEGG: gsu:GSU2590 hypothetical protein; hypothetical protein complement(4536306..4537319) Rhodopseudomonas palustris BisA53 4361741 YP_782956.1 CDS RPE_4050 NC_008435.1 4537654 4538358 R KEGG: pcr:Pcryo_0195 hypothetical protein; hypothetical protein complement(4537654..4538358) Rhodopseudomonas palustris BisA53 4361742 YP_782957.1 CDS RPE_4051 NC_008435.1 4538455 4538946 R hypothetical protein complement(4538455..4538946) Rhodopseudomonas palustris BisA53 4361743 YP_782958.1 CDS RPE_4052 NC_008435.1 4539006 4539260 D hypothetical protein 4539006..4539260 Rhodopseudomonas palustris BisA53 4361744 YP_782959.1 CDS RPE_4053 NC_008435.1 4539451 4540488 R KEGG: rpc:RPC_3050 hypothetical protein; hypothetical protein complement(4539451..4540488) Rhodopseudomonas palustris BisA53 4361745 YP_782960.1 CDS RPE_4054 NC_008435.1 4540481 4541101 R KEGG: rpc:RPC_3049 hypothetical protein; hypothetical protein complement(4540481..4541101) Rhodopseudomonas palustris BisA53 4361746 YP_782961.1 CDS RPE_4055 NC_008435.1 4541198 4542739 R KEGG: dar:Daro_2234 hypothetical protein; hypothetical protein complement(4541198..4542739) Rhodopseudomonas palustris BisA53 4361747 YP_782962.1 CDS RPE_4056 NC_008435.1 4542885 4544633 D KEGG: rpd:RPD_2290 ATP-dependent endonuclease of the OLD family-like; ATP-dependent OLD family endonuclease 4542885..4544633 Rhodopseudomonas palustris BisA53 4361748 YP_782963.1 CDS RPE_4057 NC_008435.1 4544630 4546414 D KEGG: rpd:RPD_2289 superfamily I DNA and RNA helicases-like; superfamily I DNA/RNA helicase-like protein 4544630..4546414 Rhodopseudomonas palustris BisA53 4361749 YP_782964.1 CDS RPE_4058 NC_008435.1 4546401 4547030 D hypothetical protein 4546401..4547030 Rhodopseudomonas palustris BisA53 4361750 YP_782965.1 CDS RPE_4059 NC_008435.1 4547105 4547374 R hypothetical protein complement(4547105..4547374) Rhodopseudomonas palustris BisA53 4361751 YP_782966.1 CDS RPE_4060 NC_008435.1 4547817 4547957 D KEGG: nwi:Nwi_1250 resolvase; hypothetical protein 4547817..4547957 Rhodopseudomonas palustris BisA53 4361752 YP_782967.1 CDS RPE_4061 NC_008435.1 4548283 4548720 R TIGRFAM: phasin family protein; phasin; KEGG: rpc:RPC_3940 phasin 2; phasin complement(4548283..4548720) Rhodopseudomonas palustris BisA53 4361754 YP_782968.1 CDS RPE_4062 NC_008435.1 4549016 4549399 R TIGRFAM: phasin; KEGG: rpc:RPC_3941 phasin 2; phasin 2 complement(4549016..4549399) Rhodopseudomonas palustris BisA53 4361755 YP_782969.1 CDS RPE_4063 NC_008435.1 4549719 4553273 D KEGG: rpc:RPC_3942 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 4549719..4553273 Rhodopseudomonas palustris BisA53 4361756 YP_782970.1 CDS RPE_4064 NC_008435.1 4553924 4554184 D PFAM: Rv0623 family protein transcription factor; KEGG: rpd:RPD_1446 Rv0623-like transcription factor; transcription factor 4553924..4554184 Rhodopseudomonas palustris BisA53 4361757 YP_782971.1 CDS RPE_4065 NC_008435.1 4554181 4554582 D PFAM: PilT protein domain protein; KEGG: rpd:RPD_1445 PilT protein-like; PilT domain-containing protein 4554181..4554582 Rhodopseudomonas palustris BisA53 4361758 YP_782972.1 CDS RPE_4066 NC_008435.1 4555054 4555473 R KEGG: rpa:RPA4278 hypothetical protein; hypothetical protein complement(4555054..4555473) Rhodopseudomonas palustris BisA53 4361759 YP_782973.1 CDS RPE_4067 NC_008435.1 4555702 4556376 D hypothetical protein 4555702..4556376 Rhodopseudomonas palustris BisA53 4361760 YP_782974.1 CDS RPE_4068 NC_008435.1 4556900 4557622 D PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rpc:RPC_3945 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator 4556900..4557622 Rhodopseudomonas palustris BisA53 4361761 YP_782975.1 CDS RPE_4069 NC_008435.1 4558003 4559742 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_2743 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4558003..4559742 Rhodopseudomonas palustris BisA53 4361762 YP_782976.1 CDS RPE_4070 NC_008435.1 4559796 4560053 R KEGG: rpc:RPC_3946 hypothetical protein; hypothetical protein complement(4559796..4560053) Rhodopseudomonas palustris BisA53 4361763 YP_782977.1 CDS RPE_4071 NC_008435.1 4560262 4561362 D KEGG: bja:blr7089 respiratory nitrite reductase; TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; nitrite reductase, copper-containing 4560262..4561362 Rhodopseudomonas palustris BisA53 4361764 YP_782978.1 CDS RPE_4072 NC_008435.1 4561613 4562473 D PFAM: protein of unknown function DUF323; KEGG: bja:blr7090 probable periplasmic nitrate reductase; hypothetical protein 4561613..4562473 Rhodopseudomonas palustris BisA53 4361765 YP_782979.1 CDS RPE_4073 NC_008435.1 4562590 4563612 D PFAM: extracellular solute-binding protein, family 1; KEGG: rpd:RPD_1439 extracellular solute-binding protein, family 1; extracellular solute-binding protein 4562590..4563612 Rhodopseudomonas palustris BisA53 4361766 YP_782980.1 CDS RPE_4074 NC_008435.1 4563668 4565383 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_3948 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 4563668..4565383 Rhodopseudomonas palustris BisA53 4361767 YP_782981.1 CDS RPE_4075 NC_008435.1 4565647 4568685 D KEGG: ccr:CC2874 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein; multi-sensor hybrid histidine kinase 4565647..4568685 Rhodopseudomonas palustris BisA53 4361768 YP_782982.1 CDS RPE_4076 NC_008435.1 4568890 4569507 D KEGG: rpb:RPB_1460 hypothetical protein; hypothetical protein 4568890..4569507 Rhodopseudomonas palustris BisA53 4361769 YP_782983.1 CDS RPE_4077 NC_008435.1 4569957 4570607 R KEGG: rpa:RPA4155 3-oxoadipate CoA-transferase subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B complement(4569957..4570607) Rhodopseudomonas palustris BisA53 4361770 YP_782984.1 CDS RPE_4078 NC_008435.1 4570607 4571344 R KEGG: rpc:RPC_3950 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A complement(4570607..4571344) Rhodopseudomonas palustris BisA53 4361771 YP_782985.1 CDS RPE_4079 NC_008435.1 4571721 4573658 D PFAM: AsmA family protein; KEGG: rpc:RPC_3951 AsmA; hypothetical protein 4571721..4573658 Rhodopseudomonas palustris BisA53 4361772 YP_782986.1 CDS RPE_4080 NC_008435.1 4573694 4574062 D hypothetical protein 4573694..4574062 Rhodopseudomonas palustris BisA53 4361773 YP_782987.1 CDS RPE_4081 NC_008435.1 4574089 4574907 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_3952 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(4574089..4574907) Rhodopseudomonas palustris BisA53 4361774 YP_782988.1 CDS RPE_4082 NC_008435.1 4574907 4575821 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_1455 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(4574907..4575821) Rhodopseudomonas palustris BisA53 4361775 YP_782989.1 CDS RPE_4083 NC_008435.1 4575818 4576966 R KEGG: rpc:RPC_3954 spermidine/putrescine ABC transporter ATP-binding subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATP-binding subunit complement(4575818..4576966) Rhodopseudomonas palustris BisA53 4361776 YP_782990.1 CDS RPE_4084 NC_008435.1 4577098 4579782 R KEGG: rpc:RPC_3955 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(4577098..4579782) Rhodopseudomonas palustris BisA53 4361777 YP_782991.1 CDS RPE_4085 NC_008435.1 4579978 4581084 D PFAM: FAD dependent oxidoreductase; KEGG: rpc:RPC_3956 FAD dependent oxidoreductase; FAD dependent oxidoreductase 4579978..4581084 Rhodopseudomonas palustris BisA53 4361778 YP_782992.1 CDS RPE_4086 NC_008435.1 4581366 4581551 R KEGG: rpc:RPC_3957 hypothetical protein; hypothetical protein complement(4581366..4581551) Rhodopseudomonas palustris BisA53 4361779 YP_782993.1 CDS RPE_4087 NC_008435.1 4581889 4582098 D PFAM: protein of unknown function DUF465; KEGG: rpd:RPD_1426 protein of unknown function DUF465; hypothetical protein 4581889..4582098 Rhodopseudomonas palustris BisA53 4361780 YP_782994.1 CDS RPE_4088 NC_008435.1 4582103 4582804 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_3959 diguanylate cyclase (GGDEF domain); diguanylate cyclase complement(4582103..4582804) Rhodopseudomonas palustris BisA53 4361781 YP_782995.1 CDS RPE_4089 NC_008435.1 4582925 4583413 D KEGG: rpa:RPA4174 phosphoribosylaminoimidazole carboxylase catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 4582925..4583413 Rhodopseudomonas palustris BisA53 4361782 YP_782996.1 CDS RPE_4090 NC_008435.1 4583410 4584522 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 4583410..4584522 Rhodopseudomonas palustris BisA53 4361783 YP_782997.1 CDS rpsU NC_008435.1 4584701 4585000 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 4584701..4585000 Rhodopseudomonas palustris BisA53 4361784 YP_782998.1 CDS RPE_4092 NC_008435.1 4585168 4585479 R PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(4585168..4585479) Rhodopseudomonas palustris BisA53 4361785 YP_782999.1 CDS RPE_4093 NC_008435.1 4585575 4586651 R KEGG: bja:bll6535 hypothetical protein; hypothetical protein complement(4585575..4586651) Rhodopseudomonas palustris BisA53 4361786 YP_783000.1 CDS RPE_4094 NC_008435.1 4587139 4587987 R KEGG: rpc:RPC_3963 hypothetical protein; hypothetical protein complement(4587139..4587987) Rhodopseudomonas palustris BisA53 4361787 YP_783001.1 CDS RPE_4095 NC_008435.1 4588163 4589212 R PFAM: sodium/calcium exchanger membrane region; KEGG: rpc:RPC_3965 sodium/calcium exchanger membrane region; sodium/calcium exchanger membrane region complement(4588163..4589212) Rhodopseudomonas palustris BisA53 4361788 YP_783002.1 CDS RPE_4096 NC_008435.1 4589487 4590887 R PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: rpc:RPC_3966 NAD(P) transhydrogenase, beta subunit; NAD(P) transhydrogenase subunit beta complement(4589487..4590887) Rhodopseudomonas palustris BisA53 4361789 YP_783003.1 CDS RPE_4097 NC_008435.1 4590901 4591218 R KEGG: rpc:RPC_3967 NAD(P) transhydrogenase subunit alpha part; nicotinamide nucleotide transhydrogenase subunit alpha2 complement(4590901..4591218) Rhodopseudomonas palustris BisA53 4361790 YP_783004.1 CDS RPE_4098 NC_008435.1 4591230 4592360 R PFAM: alanine dehydrogenase/PNT domain protein; KEGG: rpc:RPC_3968 NAD(P)(+) transhydrogenase (AB-specific); NAD(P)(+) transhydrogenase complement(4591230..4592360) Rhodopseudomonas palustris BisA53 4361791 YP_783005.1 CDS RPE_4099 NC_008435.1 4592445 4592597 R PFAM: aa3 type cytochrome c oxidase subunit IV; KEGG: rpc:RPC_3969 aa3 type cytochrome c oxidase subunit IV; aa3 type cytochrome c oxidase subunit IV complement(4592445..4592597) Rhodopseudomonas palustris BisA53 4361792 YP_783006.1 CDS RPE_4100 NC_008435.1 4592856 4593239 R TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: rpb:RPB_1433 death-on-curing protein; death-on-curing family protein complement(4592856..4593239) Rhodopseudomonas palustris BisA53 4361793 YP_783007.1 CDS RPE_4101 NC_008435.1 4593262 4593516 R TIGRFAM: putative addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: rpd:RPD_1412 SpoVT/AbrB-like; transcriptional regulator/antitoxin MazE complement(4593262..4593516) Rhodopseudomonas palustris BisA53 4361794 YP_783008.1 CDS RPE_4102 NC_008435.1 4593620 4595527 R TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; Oligopeptidase F; KEGG: rpc:RPC_3974 peptidase M3B, oligoendopeptidase-related clade 3; pepF/M3 family oligoendopeptidase complement(4593620..4595527) Rhodopseudomonas palustris BisA53 4361795 YP_783009.1 CDS RPE_4103 NC_008435.1 4595785 4596474 D PFAM: Integral membrane protein TerC; KEGG: rpc:RPC_3975 integral membrane protein TerC; integral membrane protein TerC 4595785..4596474 Rhodopseudomonas palustris BisA53 4361796 YP_783010.1 CDS RPE_4104 NC_008435.1 4596537 4598024 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: rpc:RPC_3976 two component, sigma54 specific, transcriptional regulator, fis family; two component sigma54 specific Fis family transcriptional regulator 4596537..4598024 Rhodopseudomonas palustris BisA53 4361797 YP_783011.1 CDS RPE_4105 NC_008435.1 4598308 4600425 D PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rpc:RPC_3977 peptidoglycan-binding domain 1; peptidoglycan binding domain-containing protein 4598308..4600425 Rhodopseudomonas palustris BisA53 4361798 YP_783012.1 CDS RPE_4106 NC_008435.1 4600717 4602336 D PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: rpc:RPC_3978 protein of unknown function DUF882; hypothetical protein 4600717..4602336 Rhodopseudomonas palustris BisA53 4361799 YP_783013.1 CDS RPE_4107 NC_008435.1 4602530 4602799 R KEGG: rpc:RPC_3979 hypothetical protein; hypothetical protein complement(4602530..4602799) Rhodopseudomonas palustris BisA53 4361800 YP_783014.1 CDS RPE_4108 NC_008435.1 4603014 4603313 R PFAM: protein of unknown function DUF1244; KEGG: rpb:RPB_1425 protein of unknown function DUF1244; hypothetical protein complement(4603014..4603313) Rhodopseudomonas palustris BisA53 4361801 YP_783015.1 CDS RPE_4109 NC_008435.1 4603517 4604107 D PFAM: protein of unknown function DUF1036; KEGG: rpc:RPC_3981 protein of unknown function DUF1036; hypothetical protein 4603517..4604107 Rhodopseudomonas palustris BisA53 4361802 YP_783016.1 CDS RPE_4110 NC_008435.1 4604104 4605537 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 4604104..4605537 Rhodopseudomonas palustris BisA53 4361803 YP_783017.1 CDS RPE_4111 NC_008435.1 4605562 4605999 R PFAM: protein of unknown function UPF0150; KEGG: rpb:RPB_1422 protein of unknown function UPF0150; hypothetical protein complement(4605562..4605999) Rhodopseudomonas palustris BisA53 4361804 YP_783018.1 CDS RPE_4112 NC_008435.1 4606034 4606462 R PFAM: OsmC family protein; KEGG: rpc:RPC_3986 OsmC-like protein; OsmC-like protein complement(4606034..4606462) Rhodopseudomonas palustris BisA53 4361805 YP_783019.1 CDS RPE_4113 NC_008435.1 4606516 4607472 R PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_3987 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(4606516..4607472) Rhodopseudomonas palustris BisA53 4361806 YP_783020.1 CDS RPE_4114 NC_008435.1 4607546 4608211 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpc:RPC_3988 tetratricopeptide TPR_2; TPR repeat-containing protein complement(4607546..4608211) Rhodopseudomonas palustris BisA53 4361807 YP_783021.1 CDS rpmJ NC_008435.1 4608328 4608453 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 complement(4608328..4608453) Rhodopseudomonas palustris BisA53 4361808 YP_783022.1 CDS RPE_4116 NC_008435.1 4608774 4609313 D hypothetical protein 4608774..4609313 Rhodopseudomonas palustris BisA53 4361809 YP_783023.1 CDS RPE_4117 NC_008435.1 4609354 4610319 R PFAM: Uncharacterized protein UPF0065; KEGG: rpc:RPC_3993 uncharacterized protein UPF0065; hypothetical protein complement(4609354..4610319) Rhodopseudomonas palustris BisA53 4361810 YP_783024.1 CDS RPE_4118 NC_008435.1 4610348 4610794 R PFAM: MaoC domain protein dehydratase; KEGG: rpc:RPC_3994 MaoC-like dehydratase; dehydratase complement(4610348..4610794) Rhodopseudomonas palustris BisA53 4361811 YP_783025.1 CDS RPE_4119 NC_008435.1 4610861 4611331 R PFAM: MaoC domain protein dehydratase; KEGG: rpc:RPC_3995 hypothetical protein; dehydratase complement(4610861..4611331) Rhodopseudomonas palustris BisA53 4361812 YP_783026.1 CDS RPE_4120 NC_008435.1 4611440 4612210 D PFAM: regulatory proteins, IclR; KEGG: rpc:RPC_3996 transcriptional regulator, IclR family; IclR family transcriptional regulator 4611440..4612210 Rhodopseudomonas palustris BisA53 4361813 YP_783027.1 CDS RPE_4121 NC_008435.1 4612295 4613170 D PFAM: amidohydrolase 2; KEGG: rpb:RPB_1417 amidohydrolase 2; amidohydrolase 2 4612295..4613170 Rhodopseudomonas palustris BisA53 4361814 YP_783028.1 CDS RPE_4122 NC_008435.1 4613174 4613647 D PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: rpc:RPC_3997 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein 4613174..4613647 Rhodopseudomonas palustris BisA53 4361815 YP_783029.1 CDS RPE_4123 NC_008435.1 4613695 4613943 R KEGG: rpc:RPC_3999 hypothetical protein; hypothetical protein complement(4613695..4613943) Rhodopseudomonas palustris BisA53 4361816 YP_783030.1 CDS RPE_4124 NC_008435.1 4613956 4614168 R KEGG: rpc:RPC_4000 hypothetical protein; hypothetical protein complement(4613956..4614168) Rhodopseudomonas palustris BisA53 4361817 YP_783031.1 CDS RPE_4125 NC_008435.1 4614366 4615751 D PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: rpc:RPC_4001 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 4614366..4615751 Rhodopseudomonas palustris BisA53 4361818 YP_783032.1 CDS RPE_4126 NC_008435.1 4615770 4617044 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpa:RPA1762 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(4615770..4617044) Rhodopseudomonas palustris BisA53 4361819 YP_783033.1 CDS RPE_4127 NC_008435.1 4617248 4618027 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 4617248..4618027 Rhodopseudomonas palustris BisA53 4361820 YP_783034.1 CDS RPE_4128 NC_008435.1 4618142 4618603 R PFAM: ribonuclease H; KEGG: rpc:RPC_4076 ribonuclease H; ribonuclease H complement(4618142..4618603) Rhodopseudomonas palustris BisA53 4361821 YP_783035.1 CDS RPE_4129 NC_008435.1 4618600 4619580 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase complement(4618600..4619580) Rhodopseudomonas palustris BisA53 4361822 YP_783036.1 CDS ispH NC_008435.1 4619586 4620548 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(4619586..4620548) Rhodopseudomonas palustris BisA53 4361823 YP_783037.1 CDS RPE_4131 NC_008435.1 4620838 4621572 D PFAM: protein of unknown function DUF1013; KEGG: rpa:RPA4272 hypothetical protein; hypothetical protein 4620838..4621572 Rhodopseudomonas palustris BisA53 4361824 YP_783038.1 CDS RPE_4133 NC_008435.1 4621867 4622181 R KEGG: rpc:RPC_4080 hypothetical protein; hypothetical protein complement(4621867..4622181) Rhodopseudomonas palustris BisA53 4361826 YP_783039.1 CDS RPE_4134 NC_008435.1 4624203 4624619 D PFAM: phosphate-starvation-inducible E; KEGG: rpc:RPC_4082 phosphate-starvation-inducible E; phosphate-starvation-inducible E 4624203..4624619 Rhodopseudomonas palustris BisA53 4361827 YP_783040.1 CDS RPE_4135 NC_008435.1 4625028 4625333 D KEGG: rpc:RPC_1806 hypothetical protein; hypothetical protein 4625028..4625333 Rhodopseudomonas palustris BisA53 4361828 YP_783041.1 CDS RPE_4136 NC_008435.1 4625479 4625763 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: rfr:Rfer_0623 prevent-host-death protein; prevent-host-death family protein 4625479..4625763 Rhodopseudomonas palustris BisA53 4361829 YP_783042.1 CDS RPE_4137 NC_008435.1 4625760 4626203 D PFAM: PilT protein domain protein; KEGG: bja:bll2434 plasmid stability protein; PilT domain-containing protein 4625760..4626203 Rhodopseudomonas palustris BisA53 4361830 YP_783043.1 CDS RPE_4138 NC_008435.1 4626288 4626629 D KEGG: rpb:RPB_1318 hypothetical protein; hypothetical protein 4626288..4626629 Rhodopseudomonas palustris BisA53 4361831 YP_783044.1 CDS RPE_4139 NC_008435.1 4626797 4627012 D KEGG: rpc:RPC_4084 hypothetical protein; hypothetical protein 4626797..4627012 Rhodopseudomonas palustris BisA53 4361832 YP_783045.1 CDS RPE_4140 NC_008435.1 4627373 4628920 R KEGG: rpc:RPC_4085 hypothetical protein; hypothetical protein complement(4627373..4628920) Rhodopseudomonas palustris BisA53 4361833 YP_783046.1 CDS RPE_4141 NC_008435.1 4629070 4630362 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(4629070..4630362) Rhodopseudomonas palustris BisA53 4361834 YP_783047.1 CDS RPE_4142 NC_008435.1 4630756 4631067 D KEGG: nha:Nham_4658 hypothetical protein; hypothetical protein 4630756..4631067 Rhodopseudomonas palustris BisA53 4361835 YP_783048.1 CDS RPE_4143 NC_008435.1 4631069 4631473 D SMART: helix-turn-helix domain protein; KEGG: nha:Nham_4657 transcriptional regulator, XRE family; XRE family transcriptional regulator 4631069..4631473 Rhodopseudomonas palustris BisA53 4361836 YP_783049.1 CDS RPE_4144 NC_008435.1 4631563 4632687 R PFAM: NapC/NirT cytochrome c domain protein; KEGG: rpc:RPC_1749 NapC/NirT cytochrome c-like; NapC/NirT cytochrome c domain-containing protein complement(4631563..4632687) Rhodopseudomonas palustris BisA53 4361837 YP_783050.1 CDS RPE_4145 NC_008435.1 4632842 4633837 R PFAM: Di-haem cytochrome c peroxidase; KEGG: rpc:RPC_1205 cytochrome-c peroxidase; cytochrome-c peroxidase complement(4632842..4633837) Rhodopseudomonas palustris BisA53 4361838 YP_783051.1 CDS RPE_4146 NC_008435.1 4634148 4636823 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rpa:RPA2957 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL); PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(4634148..4636823) Rhodopseudomonas palustris BisA53 4361839 YP_783052.1 CDS RPE_4147 NC_008435.1 4637010 4638611 R PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: rpc:RPC_4088 beta-lactamase-like; beta-lactamase domain-containing protein complement(4637010..4638611) Rhodopseudomonas palustris BisA53 4361840 YP_783053.1 CDS RPE_4148 NC_008435.1 4638608 4639516 R Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase complement(4638608..4639516) Rhodopseudomonas palustris BisA53 4361841 YP_783054.1 CDS RPE_4149 NC_008435.1 4639513 4641054 R catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine; thymidine phosphorylase complement(4639513..4641054) Rhodopseudomonas palustris BisA53 4361842 YP_783055.1 CDS RPE_4150 NC_008435.1 4641295 4641828 D KEGG: rpc:RPC_4090 hypothetical protein; hypothetical protein 4641295..4641828 Rhodopseudomonas palustris BisA53 4361843 YP_783056.1 CDS RPE_4151 NC_008435.1 4641962 4642783 D PFAM: aldo/keto reductase; KEGG: rpd:RPD_3895 aldo/keto reductase; aldo/keto reductase 4641962..4642783 Rhodopseudomonas palustris BisA53 4361844 YP_783057.1 CDS RPE_4152 NC_008435.1 4642936 4643412 D TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: rpc:RPC_4093 hypothetical protein; ybaK/ebsC protein 4642936..4643412 Rhodopseudomonas palustris BisA53 4361845 YP_783058.1 CDS RPE_4153 NC_008435.1 4644013 4644945 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: rpd:RPD_3897 protein of unknown function DUF6, transmembrane; hypothetical protein 4644013..4644945 Rhodopseudomonas palustris BisA53 4361846 YP_783059.1 CDS RPE_4154 NC_008435.1 4645050 4646729 R KEGG: rpc:RPC_4100 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor complement(4645050..4646729) Rhodopseudomonas palustris BisA53 4361847 YP_783060.1 CDS RPE_4155 NC_008435.1 4647092 4649188 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_4101 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(4647092..4649188) Rhodopseudomonas palustris BisA53 4361848 YP_783061.1 CDS RPE_4156 NC_008435.1 4649539 4650522 R PFAM: Rubrerythrin; protein of unknown function DUF125, transmembrane; KEGG: rpd:RPD_3902 rubrerythrin; rubrerythrin complement(4649539..4650522) Rhodopseudomonas palustris BisA53 4361849 YP_783062.1 CDS RPE_4157 NC_008435.1 4650679 4652034 D KEGG: rpd:RPD_3903 hypothetical protein; hypothetical protein 4650679..4652034 Rhodopseudomonas palustris BisA53 4361850 YP_783063.1 CDS RPE_4158 NC_008435.1 4652174 4653889 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: rpc:RPC_4105 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(4652174..4653889) Rhodopseudomonas palustris BisA53 4361851 YP_783064.1 CDS RPE_4159 NC_008435.1 4654054 4655739 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: rpc:RPC_4104 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(4654054..4655739) Rhodopseudomonas palustris BisA53 4361852 YP_783065.1 CDS RPE_4160 NC_008435.1 4655977 4657569 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(4655977..4657569) Rhodopseudomonas palustris BisA53 4361853 YP_783066.1 CDS RPE_4161 NC_008435.1 4657772 4658944 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; phosphoserine aminotransferase complement(4657772..4658944) Rhodopseudomonas palustris BisA53 4361854 YP_783067.1 CDS RPE_4162 NC_008435.1 4659339 4659584 R hypothetical protein complement(4659339..4659584) Rhodopseudomonas palustris BisA53 4361855 YP_783068.1 CDS RPE_4163 NC_008435.1 4659725 4660198 R PFAM: GCN5-related N-acetyltransferase; KEGG: rpc:RPC_4109 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(4659725..4660198) Rhodopseudomonas palustris BisA53 4361856 YP_783069.1 CDS RPE_4164 NC_008435.1 4660215 4660802 R PFAM: Glutathione S-transferase, N-terminal domain; KEGG: rpa:RPA4314 possible glutathione S-transferase; glutathione S-transferase complement(4660215..4660802) Rhodopseudomonas palustris BisA53 4361857 YP_783070.1 CDS RPE_4165 NC_008435.1 4660863 4661654 R KEGG: rpa:RPA4315 hypothetical protein; hypothetical protein complement(4660863..4661654) Rhodopseudomonas palustris BisA53 4361858 YP_783071.1 CDS RPE_4166 NC_008435.1 4661800 4662633 R KEGG: rpd:RPD_3912 hypothetical protein; hypothetical protein complement(4661800..4662633) Rhodopseudomonas palustris BisA53 4361859 YP_783072.1 CDS RPE_4167 NC_008435.1 4662889 4664091 R PFAM: major facilitator superfamily MFS_1; KEGG: rpa:RPA4317 putative fosmidomycin resistance protein; major facilitator transporter complement(4662889..4664091) Rhodopseudomonas palustris BisA53 4361860 YP_783073.1 CDS glmM NC_008435.1 4664284 4665636 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(4664284..4665636) Rhodopseudomonas palustris BisA53 4361861 YP_783074.1 CDS RPE_4169 NC_008435.1 4665868 4666026 R KEGG: rpc:RPC_4114 hypothetical protein; hypothetical protein complement(4665868..4666026) Rhodopseudomonas palustris BisA53 4361862 YP_783075.1 CDS RPE_4170 NC_008435.1 4666190 4667329 D PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: rpd:RPD_3916 L-lactate dehydrogenase (cytochrome); L-lactate dehydrogenase (cytochrome) 4666190..4667329 Rhodopseudomonas palustris BisA53 4361863 YP_783076.1 CDS RPE_4171 NC_008435.1 4667512 4668381 R KEGG: rpc:RPC_4117 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; shikimate 5-dehydrogenase complement(4667512..4668381) Rhodopseudomonas palustris BisA53 4361864 YP_783077.1 CDS RPE_4172 NC_008435.1 4668378 4668632 R PFAM: helix-turn-helix domain protein; KEGG: rpc:RPC_4118 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(4668378..4668632) Rhodopseudomonas palustris BisA53 4361865 YP_783078.1 CDS RPE_4173 NC_008435.1 4668746 4670794 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(4668746..4670794) Rhodopseudomonas palustris BisA53 4361866 YP_783079.1 CDS RPE_4174 NC_008435.1 4671015 4671488 R PFAM: protein of unknown function DUF992; KEGG: rpc:RPC_4120 protein of unknown function DUF992; hypothetical protein complement(4671015..4671488) Rhodopseudomonas palustris BisA53 4361867 YP_783080.1 CDS RPE_4175 NC_008435.1 4671769 4672284 R PFAM: protein of unknown function DUF992; KEGG: rpc:RPC_4121 protein of unknown function DUF992; hypothetical protein complement(4671769..4672284) Rhodopseudomonas palustris BisA53 4361868 YP_783081.1 CDS RPE_4176 NC_008435.1 4672410 4673612 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(4672410..4673612) Rhodopseudomonas palustris BisA53 4361869 YP_783082.1 CDS RPE_4177 NC_008435.1 4674077 4674721 D PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: rpc:RPC_4124 glutathione S-transferase-like; glutathione S-transferase 4674077..4674721 Rhodopseudomonas palustris BisA53 4361870 YP_783083.1 CDS RPE_4178 NC_008435.1 4675127 4676293 D PFAM: glucose sorbosone dehydrogenase; KEGG: rpc:RPC_4125 glucose sorbosone dehydrogenase; glucose sorbosone dehydrogenase 4675127..4676293 Rhodopseudomonas palustris BisA53 4361871 YP_783084.1 CDS RPE_4179 NC_008435.1 4676492 4676842 R PFAM: protein of unknown function DUF486; KEGG: rpc:RPC_4126 protein of unknown function DUF486; hypothetical protein complement(4676492..4676842) Rhodopseudomonas palustris BisA53 4361872 YP_783085.1 CDS RPE_4180 NC_008435.1 4677141 4677974 D PFAM: phospholipid/glycerol acyltransferase; KEGG: rpc:RPC_4127 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 4677141..4677974 Rhodopseudomonas palustris BisA53 4361873 YP_783086.1 CDS RPE_4181 NC_008435.1 4678065 4679003 D PFAM: aldo/keto reductase; KEGG: rpc:RPC_4128 aldo/keto reductase; aldo/keto reductase 4678065..4679003 Rhodopseudomonas palustris BisA53 4361874 YP_783087.1 CDS RPE_4182 NC_008435.1 4679571 4680089 R hypothetical protein complement(4679571..4680089) Rhodopseudomonas palustris BisA53 4361875 YP_783088.1 CDS RPE_4183 NC_008435.1 4680951 4681391 D KEGG: rpc:RPC_4131 hypothetical protein; hypothetical protein 4680951..4681391 Rhodopseudomonas palustris BisA53 4361876 YP_783089.1 CDS RPE_4184 NC_008435.1 4681528 4681728 D KEGG: rpc:RPC_4132 hypothetical protein; hypothetical protein 4681528..4681728 Rhodopseudomonas palustris BisA53 4361877 YP_783090.1 CDS RPE_4185 NC_008435.1 4681748 4682470 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpc:RPC_4133 HAD-superfamily hydrolase subfamily IA, variant 3; HAD family hydrolase 4681748..4682470 Rhodopseudomonas palustris BisA53 4361878 YP_783091.1 CDS RPE_4186 NC_008435.1 4682884 4683579 R PFAM: Glutathione S-transferase, N-terminal domain; KEGG: rpc:RPC_4134 glutathione S-transferase-like; glutathione S-transferase complement(4682884..4683579) Rhodopseudomonas palustris BisA53 4361879 YP_783092.1 CDS RPE_4187 NC_008435.1 4683722 4684429 R PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: rpb:RPB_4144 glutathione S-transferase-like; glutathione S-transferase complement(4683722..4684429) Rhodopseudomonas palustris BisA53 4361880 YP_783093.1 CDS RPE_4188 NC_008435.1 4684700 4685089 D KEGG: bja:bll6206 hypothetical protein; hypothetical protein 4684700..4685089 Rhodopseudomonas palustris BisA53 4361881 YP_783094.1 CDS RPE_4189 NC_008435.1 4685297 4687285 R PFAM: beta-lactamase domain protein; KEGG: rpb:RPB_4145 beta-lactamase-like; beta-lactamase domain-containing protein complement(4685297..4687285) Rhodopseudomonas palustris BisA53 4361882 YP_783095.1 CDS RPE_4190 NC_008435.1 4687523 4688575 D KEGG: rpa:RPA4342 hypothetical protein; hypothetical protein 4687523..4688575 Rhodopseudomonas palustris BisA53 4361883 YP_783096.1 CDS RPE_4191 NC_008435.1 4688622 4691693 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 4688622..4691693 Rhodopseudomonas palustris BisA53 4361884 YP_783097.1 CDS RPE_4192 NC_008435.1 4691817 4692221 R PFAM: protein of unknown function DUF1236; hypothetical protein complement(4691817..4692221) Rhodopseudomonas palustris BisA53 4361885 YP_783098.1 CDS RPE_4193 NC_008435.1 4692374 4692685 R KEGG: rpd:RPD_3990 hypothetical protein; hypothetical protein complement(4692374..4692685) Rhodopseudomonas palustris BisA53 4361886 YP_783099.1 CDS RPE_4194 NC_008435.1 4692864 4693160 D PFAM: protein of unknown function DUF891; KEGG: gme:Gmet_2533 protein of unknown function DUF891; hypothetical protein 4692864..4693160 Rhodopseudomonas palustris BisA53 4361887 YP_783100.1 CDS RPE_4195 NC_008435.1 4693163 4693450 D KEGG: rpd:RPD_3989 hypothetical protein; putative transcriptional regulator 4693163..4693450 Rhodopseudomonas palustris BisA53 4361888 YP_783101.1 CDS RPE_4196 NC_008435.1 4693576 4693809 D KEGG: rpa:RPA4344 hypothetical protein; hypothetical protein 4693576..4693809 Rhodopseudomonas palustris BisA53 4361889 YP_783102.1 CDS RPE_4197 NC_008435.1 4693831 4694004 D PFAM: YcfA family protein; KEGG: rpc:RPC_4143 YcfA-like; hypothetical protein 4693831..4694004 Rhodopseudomonas palustris BisA53 4361890 YP_783103.1 CDS RPE_4198 NC_008435.1 4694472 4695725 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(4694472..4695725) Rhodopseudomonas palustris BisA53 4361891 YP_783104.1 CDS RPE_4199 NC_008435.1 4696122 4698206 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_4147 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4696122..4698206 Rhodopseudomonas palustris BisA53 4361892 YP_783105.1 CDS RPE_4200 NC_008435.1 4698309 4698683 D KEGG: rpc:RPC_4148 hypothetical protein; hypothetical protein 4698309..4698683 Rhodopseudomonas palustris BisA53 4361893 YP_783106.1 CDS RPE_4201 NC_008435.1 4698861 4699109 R hypothetical protein complement(4698861..4699109) Rhodopseudomonas palustris BisA53 4361894 YP_783107.1 CDS RPE_4202 NC_008435.1 4699271 4700158 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: rpc:RPC_4149 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(4699271..4700158) Rhodopseudomonas palustris BisA53 4361895 YP_783108.1 CDS RPE_4203 NC_008435.1 4700183 4701613 R catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase complement(4700183..4701613) Rhodopseudomonas palustris BisA53 4361896 YP_783109.1 CDS RPE_4204 NC_008435.1 4701879 4703075 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(4701879..4703075) Rhodopseudomonas palustris BisA53 4361897 YP_783110.1 CDS RPE_4205 NC_008435.1 4703133 4704488 R KEGG: rpc:RPC_4155 hypothetical protein; hypothetical protein complement(4703133..4704488) Rhodopseudomonas palustris BisA53 4361898 YP_783111.1 CDS RPE_4206 NC_008435.1 4704721 4706031 D PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: rpc:RPC_4156 UDP-glucose 6-dehydrogenase; UDP-glucose 6-dehydrogenase 4704721..4706031 Rhodopseudomonas palustris BisA53 4361899 YP_783112.1 CDS RPE_4207 NC_008435.1 4706147 4707856 D PFAM: TPR repeat-containing protein; peptidase C14, caspase catalytic subunit p20; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:blr5947 hypothetical protein; peptidase C14, caspase catalytic subunit p20 4706147..4707856 Rhodopseudomonas palustris BisA53 4361900 YP_783113.1 CDS RPE_4208 NC_008435.1 4707892 4708299 R KEGG: rpa:RPA4278 hypothetical protein; hypothetical protein complement(4707892..4708299) Rhodopseudomonas palustris BisA53 4361901 YP_783114.1 CDS RPE_4209 NC_008435.1 4708328 4709446 R catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(4708328..4709446) Rhodopseudomonas palustris BisA53 4361902 YP_783115.1 CDS RPE_4210 NC_008435.1 4709498 4710223 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA4025 putative branched-chain amino acid ABC transport system ATP-binding protein; ABC transporter-like protein complement(4709498..4710223) Rhodopseudomonas palustris BisA53 4361903 YP_783116.1 CDS RPE_4211 NC_008435.1 4710216 4710968 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_1589 ABC transporter related; ABC transporter-like protein complement(4710216..4710968) Rhodopseudomonas palustris BisA53 4361904 YP_783117.1 CDS RPE_4212 NC_008435.1 4710965 4711996 R PFAM: inner-membrane translocator; KEGG: bja:bll5951 ABC transporter permease protein; inner-membrane translocator complement(4710965..4711996) Rhodopseudomonas palustris BisA53 4361905 YP_783118.1 CDS RPE_4213 NC_008435.1 4712001 4712867 R PFAM: inner-membrane translocator; KEGG: rpa:RPA4028 possible ABC transport system permease protein; inner-membrane translocator complement(4712001..4712867) Rhodopseudomonas palustris BisA53 4361906 YP_783119.1 CDS RPE_4214 NC_008435.1 4713058 4714098 D PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rpc:RPC_4622 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 4713058..4714098 Rhodopseudomonas palustris BisA53 4361907 YP_783120.1 CDS RPE_4215 NC_008435.1 4714424 4715602 R PFAM: Extracellular ligand-binding receptor; KEGG: rpd:RPD_1586 twin-arginine translocation pathway signal; extracellular ligand-binding receptor complement(4714424..4715602) Rhodopseudomonas palustris BisA53 4361908 YP_783121.1 CDS RPE_4216 NC_008435.1 4715882 4716223 D KEGG: bja:blr5954 hypothetical protein; hypothetical protein 4715882..4716223 Rhodopseudomonas palustris BisA53 4361909 YP_783122.1 CDS RPE_4217 NC_008435.1 4716363 4717379 D PFAM: glycosyl transferase, family 4; KEGG: rpc:RPC_4162 glycosyl transferase, family 4; glycosyl transferase family protein 4716363..4717379 Rhodopseudomonas palustris BisA53 4361910 YP_783123.1 CDS RPE_4218 NC_008435.1 4717380 4719287 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: rpc:RPC_4163 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD complement(4717380..4719287) Rhodopseudomonas palustris BisA53 4361911 YP_783124.1 CDS purU NC_008435.1 4719575 4720438 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(4719575..4720438) Rhodopseudomonas palustris BisA53 4361912 YP_783125.1 CDS RPE_4220 NC_008435.1 4720571 4721401 D PFAM: Uroporphyrinogen III synthase HEM4; KEGG: rpc:RPC_4165 uroporphyrinogen III synthase HEM4; uroporphyrinogen III synthase HEM4 4720571..4721401 Rhodopseudomonas palustris BisA53 4361913 YP_783126.1 CDS RPE_4221 NC_008435.1 4721586 4722818 D KEGG: rpc:RPC_4167 ABC transporter, periplasmic branched chain amino acid binding protein; ABC transporter periplasmic branched chain amino acid binding protein 4721586..4722818 Rhodopseudomonas palustris BisA53 4361914 YP_783127.1 CDS RPE_4222 NC_008435.1 4723032 4723979 D PFAM: inner-membrane translocator; KEGG: rpc:RPC_4168 inner-membrane translocator; inner-membrane translocator 4723032..4723979 Rhodopseudomonas palustris BisA53 4361915 YP_783128.1 CDS RPE_4223 NC_008435.1 4723976 4725277 D PFAM: inner-membrane translocator; KEGG: rpd:RPD_1578 inner-membrane translocator; inner-membrane translocator 4723976..4725277 Rhodopseudomonas palustris BisA53 4361916 YP_783129.1 CDS RPE_4224 NC_008435.1 4725274 4726023 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_4170 ABC transporter related; ABC transporter-like protein 4725274..4726023 Rhodopseudomonas palustris BisA53 4361917 YP_783130.1 CDS RPE_4225 NC_008435.1 4726023 4726718 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA4038 possible ABC transport system ATP-binding protein; ABC transporter-like protein 4726023..4726718 Rhodopseudomonas palustris BisA53 4361918 YP_783131.1 CDS RPE_4226 NC_008435.1 4726823 4727722 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_1561 ABC transporter related; ABC transporter-like protein 4726823..4727722 Rhodopseudomonas palustris BisA53 4361919 YP_783132.1 CDS RPE_4227 NC_008435.1 4727719 4729650 D PFAM: AMP-dependent synthetase and ligase; KEGG: rpb:RPB_1560 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 4727719..4729650 Rhodopseudomonas palustris BisA53 4361920 YP_783133.1 CDS RPE_4228 NC_008435.1 4729854 4730219 R PFAM: protein of unknown function DUF559; KEGG: rpb:RPB_1559 protein of unknown function DUF559; hypothetical protein complement(4729854..4730219) Rhodopseudomonas palustris BisA53 4361921 YP_783134.1 CDS RPE_4229 NC_008435.1 4730330 4731223 D PFAM: inner-membrane translocator; KEGG: rpd:RPD_1568 inner-membrane translocator; inner-membrane translocator 4730330..4731223 Rhodopseudomonas palustris BisA53 4361922 YP_783135.1 CDS RPE_4230 NC_008435.1 4731230 4732303 D PFAM: inner-membrane translocator; KEGG: rpc:RPC_4178 inner-membrane translocator; inner-membrane translocator 4731230..4732303 Rhodopseudomonas palustris BisA53 4361923 YP_783136.1 CDS RPE_4231 NC_008435.1 4732363 4733643 D KEGG: rpa:RPA4045 possible branched-chain amino acid ABC transport system substrate-binding protein; putative branched-chain amino acid ABC transport system substrate-binding protein 4732363..4733643 Rhodopseudomonas palustris BisA53 4361924 YP_783137.1 CDS RPE_4232 NC_008435.1 4733799 4734635 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_1555 ABC transporter related; ABC transporter-like protein 4733799..4734635 Rhodopseudomonas palustris BisA53 4361925 YP_783138.1 CDS RPE_4233 NC_008435.1 4734802 4735971 D PFAM: glycosyl transferase, group 1; KEGG: bpa:BPP0798 putative glycosyltransferase; group 1 glycosyl transferase 4734802..4735971 Rhodopseudomonas palustris BisA53 4361926 YP_783139.1 CDS RPE_4234 NC_008435.1 4735972 4737426 R PFAM: aldehyde dehydrogenase; KEGG: gvi:glr3848 aldehyde dehydrogenase; aldehyde dehydrogenase complement(4735972..4737426) Rhodopseudomonas palustris BisA53 4361927 YP_783140.1 CDS RPE_4235 NC_008435.1 4737444 4738259 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:blr5976 putative oxidoreductase; short-chain dehydrogenase/reductase SDR complement(4737444..4738259) Rhodopseudomonas palustris BisA53 4361928 YP_783141.1 CDS RPE_4236 NC_008435.1 4738262 4739335 R PFAM: N-acetylneuraminic acid synthase, N-terminal domain; KEGG: dre:322780 zgc:77126; N-acetylneuraminate synthase complement(4738262..4739335) Rhodopseudomonas palustris BisA53 4361929 YP_783142.1 CDS RPE_4237 NC_008435.1 4739411 4741096 R PFAM: Capsule polysaccharide biosynthesis; KEGG: syn:slr2115 hypothetical protein; capsule polysaccharide biosynthesis complement(4739411..4741096) Rhodopseudomonas palustris BisA53 4361930 YP_783143.1 CDS RPE_4238 NC_008435.1 4741093 4743030 R PFAM: Transketolase domain protein; Transketolase, central region; KEGG: sma:SAV1891 putative transketolase; transketolase, central region complement(4741093..4743030) Rhodopseudomonas palustris BisA53 4361931 YP_783144.1 CDS RPE_4239 NC_008435.1 4743066 4743845 R PFAM: acylneuraminate cytidylyltransferase; KEGG: nmu:Nmul_A0410 acylneuraminate cytidylyltransferase; acylneuraminate cytidylyltransferase complement(4743066..4743845) Rhodopseudomonas palustris BisA53 4361932 YP_783145.1 CDS RPE_4240 NC_008435.1 4744037 4744561 D TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: sco:SCO4880 transferase; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 4744037..4744561 Rhodopseudomonas palustris BisA53 4361933 YP_783146.1 CDS RPE_4241 NC_008435.1 4744602 4745735 D PFAM: glycosyl transferase, group 1; KEGG: rpb:RPB_1547 glycosyl transferase, group 1; group 1 glycosyl transferase 4744602..4745735 Rhodopseudomonas palustris BisA53 4361934 YP_783147.1 CDS RPE_4242 NC_008435.1 4745748 4746551 R TIGRFAM: methyltransferase FkbM family; KEGG: sma:SAV5730 hypothetical protein; FkbM family methyltransferase complement(4745748..4746551) Rhodopseudomonas palustris BisA53 4361935 YP_783148.1 CDS RPE_4243 NC_008435.1 4746563 4747135 R KEGG: ret:RHE_CH01595 hypothetical protein; hypothetical protein complement(4746563..4747135) Rhodopseudomonas palustris BisA53 4361936 YP_783149.1 CDS RPE_4244 NC_008435.1 4747416 4747844 D hypothetical protein 4747416..4747844 Rhodopseudomonas palustris BisA53 4361937 YP_783150.1 CDS RPE_4245 NC_008435.1 4747868 4748797 D hypothetical protein 4747868..4748797 Rhodopseudomonas palustris BisA53 4361938 YP_783151.1 CDS RPE_4246 NC_008435.1 4749023 4749805 D PFAM: Cephalosporin hydroxylase; KEGG: pfo:Pfl_1516 cephalosporin hydroxylase; cephalosporin hydroxylase 4749023..4749805 Rhodopseudomonas palustris BisA53 4361939 YP_783152.1 CDS RPE_4247 NC_008435.1 4749957 4751996 R PFAM: glycosyl transferase, family 2; KEGG: sco:SCO0398 glycosyl transferase; glycosyl transferase family protein complement(4749957..4751996) Rhodopseudomonas palustris BisA53 4361940 YP_783153.1 CDS RPE_4248 NC_008435.1 4752039 4753256 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0851 ATPase; ABC transporter-like protein complement(4752039..4753256) Rhodopseudomonas palustris BisA53 4361941 YP_783154.1 CDS RPE_4249 NC_008435.1 4753273 4754103 R PFAM: ABC-2 type transporter; KEGG: dde:Dde_0841 polysaccharide ABC transporter, permease protein; ABC-2 type transporter complement(4753273..4754103) Rhodopseudomonas palustris BisA53 4361942 YP_783155.1 CDS RPE_4250 NC_008435.1 4754303 4755505 R PFAM: glycosyl transferase, group 1; KEGG: ade:Adeh_3057 glycosyl transferase, group 1; group 1 glycosyl transferase complement(4754303..4755505) Rhodopseudomonas palustris BisA53 4361943 YP_783156.1 CDS RPE_4251 NC_008435.1 4755843 4757576 R KEGG: syn:slr2115 hypothetical protein; hypothetical protein complement(4755843..4757576) Rhodopseudomonas palustris BisA53 4361944 YP_783157.1 CDS RPE_4252 NC_008435.1 4757581 4758747 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sdn:Sden_2654 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase complement(4757581..4758747) Rhodopseudomonas palustris BisA53 4361945 YP_783158.1 CDS RPE_4253 NC_008435.1 4759061 4759825 D TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: tbd:Tbd_1881 alpha-D-glucose-1-phosphate cytidylyltransferase; glucose-1-phosphate cytidylyltransferase 4759061..4759825 Rhodopseudomonas palustris BisA53 4361946 YP_783159.1 CDS RPE_4254 NC_008435.1 4759825 4760886 D TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: yps:YPTB1000 CDP-glucose 4,6-dehydratase; CDP-glucose 4,6-dehydratase 4759825..4760886 Rhodopseudomonas palustris BisA53 4361947 YP_783160.1 CDS RPE_4255 NC_008435.1 4760883 4762109 D PFAM: Methyltransferase type 11; Methyltransferase type 12; Methyltransferase domain protein; C-methyltransferase; KEGG: bms:BRA0438 methyltransferase, putative; C-methyltransferase 4760883..4762109 Rhodopseudomonas palustris BisA53 4361948 YP_783161.1 CDS RPE_4256 NC_008435.1 4762109 4762642 D PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; KEGG: fra:Francci3_3940 dTDP-4-dehydrorhamnose 3,5-epimerase; dTDP-4-dehydrorhamnose 3,5-epimerase 4762109..4762642 Rhodopseudomonas palustris BisA53 4361949 YP_783162.1 CDS RPE_4257 NC_008435.1 4762639 4763316 D PFAM: transferase hexapeptide repeat containing protein; KEGG: mag:amb0053 acetyltransferase; hexapaptide repeat-containing transferase 4762639..4763316 Rhodopseudomonas palustris BisA53 4361950 YP_783163.1 CDS RPE_4258 NC_008435.1 4763336 4764523 D KEGG: rpa:RPA2578 possible alginate O-acetyltransferase AlgJ; hypothetical protein 4763336..4764523 Rhodopseudomonas palustris BisA53 4361951 YP_783164.1 CDS RPE_4259 NC_008435.1 4764549 4765976 D PFAM: membrane bound O-acyl transferase, MBOAT family protein; KEGG: bca:BCE0975 alginate O-acetyltransferase, putative; membrane bound O-acyl transferase, MBOAT family protein 4764549..4765976 Rhodopseudomonas palustris BisA53 4361952 YP_783165.1 CDS RPE_4260 NC_008435.1 4766047 4767021 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: gox:GOX1611 GDP-6-deoxy-D-lyxo-4-hexulose reductase; NAD-dependent epimerase/dehydratase complement(4766047..4767021) Rhodopseudomonas palustris BisA53 4361953 YP_783166.1 CDS RPE_4261 NC_008435.1 4767066 4768037 R TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: nha:Nham_2780 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase complement(4767066..4768037) Rhodopseudomonas palustris BisA53 4361954 YP_783167.1 CDS RPE_4262 NC_008435.1 4768085 4768618 R hypothetical protein complement(4768085..4768618) Rhodopseudomonas palustris BisA53 4361955 YP_783168.1 CDS RPE_4263 NC_008435.1 4768955 4770190 R PFAM: major facilitator superfamily MFS_1; KEGG: rpc:RPC_4224 major facilitator superfamily MFS_1; major facilitator transporter complement(4768955..4770190) Rhodopseudomonas palustris BisA53 4361956 YP_783169.1 CDS flhA NC_008435.1 4770372 4772606 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 4770372..4772606 Rhodopseudomonas palustris BisA53 4361957 YP_783170.1 CDS RPE_4265 NC_008435.1 4772913 4773113 D KEGG: rpc:RPC_4226 hypothetical protein; hypothetical protein 4772913..4773113 Rhodopseudomonas palustris BisA53 4361958 YP_783171.1 CDS RPE_4266 NC_008435.1 4773293 4774231 R KEGG: rpc:RPC_4227 hypothetical protein; hypothetical protein complement(4773293..4774231) Rhodopseudomonas palustris BisA53 4361959 YP_783172.1 CDS RPE_4267 NC_008435.1 4774231 4774779 R PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: rpc:RPC_4228 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 factor complement(4774231..4774779) Rhodopseudomonas palustris BisA53 4361960 YP_783173.1 CDS RPE_4268 NC_008435.1 4774960 4775379 R TIGRFAM: flagellar export protein FliJ; KEGG: rpc:RPC_4231 flagellar export FliJ; flagellar export FliJ complement(4774960..4775379) Rhodopseudomonas palustris BisA53 4361961 YP_783174.1 CDS fliI NC_008435.1 4775490 4776815 R involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase complement(4775490..4776815) Rhodopseudomonas palustris BisA53 4361962 YP_783175.1 CDS RPE_4270 NC_008435.1 4777190 4777891 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpd:RPD_3672 response regulator receiver; two component transcriptional regulator 4777190..4777891 Rhodopseudomonas palustris BisA53 4361963 YP_783176.1 CDS RPE_4271 NC_008435.1 4778018 4779037 R TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: dar:Daro_1236 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase complement(4778018..4779037) Rhodopseudomonas palustris BisA53 4361964 YP_783177.1 CDS RPE_4272 NC_008435.1 4779119 4780531 R KEGG: rpc:RPC_4235 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(4779119..4780531) Rhodopseudomonas palustris BisA53 4361965 YP_783178.1 CDS RPE_4273 NC_008435.1 4780664 4781110 R PFAM: GtrA family protein; KEGG: rpc:RPC_4236 GtrA-like protein; GtrA family protein complement(4780664..4781110) Rhodopseudomonas palustris BisA53 4361966 YP_783179.1 CDS RPE_4274 NC_008435.1 4781238 4781813 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bxe:Bxe_B2779 amino acid efflux pump, RhtB family, LysE superfamily; lysine exporter protein LysE/YggA complement(4781238..4781813) Rhodopseudomonas palustris BisA53 4361967 YP_783180.1 CDS RPE_4275 NC_008435.1 4782038 4782775 D SMART: transglutaminase domain protein; KEGG: rpd:RPD_1465 transglutaminase-like; transglutaminase domain-containing protein 4782038..4782775 Rhodopseudomonas palustris BisA53 4361968 YP_783181.1 CDS RPE_4276 NC_008435.1 4782842 4784527 R KEGG: bja:blr2933 probable aerotaxis receptor; TIGRFAM: PAS sensor protein; PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor complement(4782842..4784527) Rhodopseudomonas palustris BisA53 4361969 YP_783182.1 CDS RPE_4278 NC_008435.1 4785679 4787178 R PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: rpc:RPC_4239 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/subunit complement(4785679..4787178) Rhodopseudomonas palustris BisA53 4361971 YP_783183.1 CDS RPE_4279 NC_008435.1 4787341 4788492 D PFAM: N-acylglucosamine 2-epimerase; KEGG: rpc:RPC_4240 N-acylglucosamine 2-epimerase; mannose-6-phosphate isomerase 4787341..4788492 Rhodopseudomonas palustris BisA53 4361972 YP_783184.1 CDS RPE_4280 NC_008435.1 4788517 4789395 R PFAM: MCP methyltransferase, CheR-type; KEGG: rpc:RPC_4243 MCP methyltransferase, CheR-type; chemotaxis protein CheR complement(4788517..4789395) Rhodopseudomonas palustris BisA53 4361973 YP_783185.1 CDS RPE_4281 NC_008435.1 4789392 4790561 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase complement(4789392..4790561) Rhodopseudomonas palustris BisA53 4361974 YP_783186.1 CDS RPE_4282 NC_008435.1 4790636 4791001 R PFAM: response regulator receiver; KEGG: rpc:RPC_4245 response regulator receiver domain protein (CheY-like); response regulator receiver protein complement(4790636..4791001) Rhodopseudomonas palustris BisA53 4361975 YP_783187.1 CDS RPE_4283 NC_008435.1 4791075 4791566 R PFAM: CheW domain protein; KEGG: rpc:RPC_4246 CheW protein; CheW protein complement(4791075..4791566) Rhodopseudomonas palustris BisA53 4361976 YP_783188.1 CDS RPE_4284 NC_008435.1 4791572 4794415 R PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rpc:RPC_4247 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase complement(4791572..4794415) Rhodopseudomonas palustris BisA53 4361977 YP_783189.1 CDS RPE_4285 NC_008435.1 4794563 4795237 R KEGG: rpc:RPC_4248 hypothetical protein; hypothetical protein complement(4794563..4795237) Rhodopseudomonas palustris BisA53 4361978 YP_783190.1 CDS RPE_4286 NC_008435.1 4795428 4796267 D PFAM: inositol monophosphatase; KEGG: rpc:RPC_4249 3'(2'),5'-bisphosphate nucleotidase; inositol monophosphatase 4795428..4796267 Rhodopseudomonas palustris BisA53 4361979 YP_783191.1 CDS RPE_4287 NC_008435.1 4796268 4796828 R KEGG: rpc:RPC_4250 hypothetical protein; hypothetical protein complement(4796268..4796828) Rhodopseudomonas palustris BisA53 4361980 YP_783192.1 CDS RPE_4288 NC_008435.1 4796880 4797479 D PFAM: Uncharacterised conserved protein UCP033924; KEGG: rpc:RPC_4251 uncharacterised conserved protein UCP033924; hypothetical protein 4796880..4797479 Rhodopseudomonas palustris BisA53 4361981 YP_783193.1 CDS RPE_4289 NC_008435.1 4797703 4798908 D KEGG: rpc:RPC_4252 hypothetical protein; hypothetical protein 4797703..4798908 Rhodopseudomonas palustris BisA53 4361982 YP_783194.1 CDS RPE_4290 NC_008435.1 4799361 4799849 R PFAM: ferric-uptake regulator; KEGG: rpc:RPC_0350 ferric uptake regulator, FUR family; ferric uptake regulator family protein complement(4799361..4799849) Rhodopseudomonas palustris BisA53 4361984 YP_783195.1 CDS RPE_4291 NC_008435.1 4799993 4800691 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_1962 ABC transporter related; ABC transporter-like protein complement(4799993..4800691) Rhodopseudomonas palustris BisA53 4361985 YP_783196.1 CDS RPE_4292 NC_008435.1 4800675 4801472 R TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: rpc:RPC_1961 cobalt ABC transporter CbiQ, permease subunit; cobalt ABC transporter inner membrane subunit CbiQ complement(4800675..4801472) Rhodopseudomonas palustris BisA53 4361986 YP_783197.1 CDS RPE_4293 NC_008435.1 4801472 4802095 R KEGG: rpc:RPC_1960 hypothetical protein; hypothetical protein complement(4801472..4802095) Rhodopseudomonas palustris BisA53 4361987 YP_783198.1 CDS RPE_4294 NC_008435.1 4802100 4802723 R catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM complement(4802100..4802723) Rhodopseudomonas palustris BisA53 4361988 YP_783199.1 CDS RPE_4295 NC_008435.1 4802741 4803535 R KEGG: rpc:RPC_1958 hypothetical protein; hypothetical protein complement(4802741..4803535) Rhodopseudomonas palustris BisA53 4361989 YP_783200.1 CDS RPE_4296 NC_008435.1 4804580 4805044 D PFAM: thioesterase superfamily protein; KEGG: rpc:RPC_3521 thioesterase superfamily; thioesterase superfamily protein 4804580..4805044 Rhodopseudomonas palustris BisA53 4361990 YP_783201.1 CDS RPE_4297 NC_008435.1 4805603 4805893 D hypothetical protein 4805603..4805893 Rhodopseudomonas palustris BisA53 4361991 YP_783202.1 CDS RPE_4298 NC_008435.1 4805973 4806779 R KEGG: rpa:RPA4081 possible pilus assembly protein cpaB; Flp pilus assembly CpaB complement(4805973..4806779) Rhodopseudomonas palustris BisA53 4361992 YP_783203.1 CDS RPE_4299 NC_008435.1 4807111 4807422 D KEGG: rpd:RPD_3686 hypothetical protein; hypothetical protein 4807111..4807422 Rhodopseudomonas palustris BisA53 4361993 YP_783204.1 CDS RPE_4300 NC_008435.1 4807698 4809236 R thiamine-pyrophosphate requiring enzyme; hypothetical protein complement(4807698..4809236) Rhodopseudomonas palustris BisA53 4361994 YP_783205.1 CDS RPE_4301 NC_008435.1 4809399 4809971 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpc:RPC_4261 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein 4809399..4809971 Rhodopseudomonas palustris BisA53 4361995 YP_783206.1 CDS RPE_4302 NC_008435.1 4809995 4810801 D KEGG: rpc:RPC_4262 hypothetical protein; hypothetical protein 4809995..4810801 Rhodopseudomonas palustris BisA53 4361996 YP_783207.1 CDS RPE_4303 NC_008435.1 4810805 4811923 R PFAM: peptidase M48, Ste24p; KEGG: rpd:RPD_3691 peptidase M48, Ste24p; peptidase M48, Ste24p complement(4810805..4811923) Rhodopseudomonas palustris BisA53 4361997 YP_783208.1 CDS RPE_4304 NC_008435.1 4811927 4813084 R KEGG: rpd:RPD_3692 hypothetical protein; hypothetical protein complement(4811927..4813084) Rhodopseudomonas palustris BisA53 4361998 YP_783209.1 CDS RPE_4305 NC_008435.1 4813332 4815014 R catalyzes the formation of benzaldehyde from benzoylformate; benzoylformate decarboxylase complement(4813332..4815014) Rhodopseudomonas palustris BisA53 4361999 YP_783210.1 CDS RPE_4306 NC_008435.1 4815247 4816104 R KEGG: rpa:RPA1610 hypothetical protein; hypothetical protein complement(4815247..4816104) Rhodopseudomonas palustris BisA53 4362000 YP_783211.1 CDS RPE_4307 NC_008435.1 4816119 4817231 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rpc:RPC_4266 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(4816119..4817231) Rhodopseudomonas palustris BisA53 4362001 YP_783212.1 CDS RPE_4308 NC_008435.1 4817417 4818589 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpa:RPA1612 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(4817417..4818589) Rhodopseudomonas palustris BisA53 4362002 YP_783213.1 CDS RPE_4309 NC_008435.1 4818635 4819900 R PFAM: cytochrome P450; KEGG: rpa:RPA1613 putative cytochrome P-450; cytochrome P450 complement(4818635..4819900) Rhodopseudomonas palustris BisA53 4362003 YP_783214.1 CDS RPE_4310 NC_008435.1 4820169 4821341 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpd:RPD_3693 isovaleryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 4820169..4821341 Rhodopseudomonas palustris BisA53 4362004 YP_783215.1 CDS RPE_4311 NC_008435.1 4821434 4822240 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:bll7251 putative dehydrogenase; short-chain dehydrogenase/reductase SDR complement(4821434..4822240) Rhodopseudomonas palustris BisA53 4362005 YP_783216.1 CDS RPE_4312 NC_008435.1 4822291 4822986 R PFAM: Hly-III family protein; KEGG: rpc:RPC_4269 Hly-III related proteins; Hly-III-like protein complement(4822291..4822986) Rhodopseudomonas palustris BisA53 4362006 YP_783217.1 CDS RPE_4313 NC_008435.1 4823218 4824684 D PFAM: protein of unknown function DUF463, YcjX family protein; KEGG: rpc:RPC_4270 protein of unknown function DUF463, YcjX-like protein; hypothetical protein 4823218..4824684 Rhodopseudomonas palustris BisA53 4362007 YP_783218.1 CDS RPE_4314 NC_008435.1 4824681 4825814 D PFAM: conserved hypothetical protein 1620; KEGG: rpc:RPC_4271 conserved hypothetical protein 1620; hypothetical protein 4824681..4825814 Rhodopseudomonas palustris BisA53 4362008 YP_783219.1 CDS RPE_4315 NC_008435.1 4826028 4826228 D PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: nwi:Nwi_3054 cold-shock protein, DNA-binding; cold-shock DNA-binding domain-containing protein 4826028..4826228 Rhodopseudomonas palustris BisA53 4362009 YP_783220.1 CDS RPE_4316 NC_008435.1 4826380 4827018 R KEGG: rpc:RPC_4273 hypothetical protein; hypothetical protein complement(4826380..4827018) Rhodopseudomonas palustris BisA53 4362010 YP_783221.1 CDS RPE_4317 NC_008435.1 4827268 4830267 D proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 4827268..4830267 Rhodopseudomonas palustris BisA53 4362011 YP_783222.1 CDS RPE_4318 NC_008435.1 4831530 4832738 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rpb:RPB_3947 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 4831530..4832738 Rhodopseudomonas palustris BisA53 4362012 YP_783223.1 CDS RPE_4319 NC_008435.1 4832819 4833727 R KEGG: rpc:RPC_1336 hypothetical protein; hypothetical protein complement(4832819..4833727) Rhodopseudomonas palustris BisA53 4362013 YP_783224.1 CDS RPE_4320 NC_008435.1 4833909 4834406 R PFAM: protein of unknown function DUF477; KEGG: rpc:RPC_1335 protein of unknown function DUF477; hypothetical protein complement(4833909..4834406) Rhodopseudomonas palustris BisA53 4362014 YP_783225.1 CDS RPE_4321 NC_008435.1 4834410 4835294 R PFAM: protein of unknown function DUF477; KEGG: rpc:RPC_1334 protein of unknown function DUF477; hypothetical protein complement(4834410..4835294) Rhodopseudomonas palustris BisA53 4362015 YP_783226.1 CDS RPE_4322 NC_008435.1 4835319 4835927 R PFAM: LemA family protein; KEGG: rpd:RPD_3714 LemA; hypothetical protein complement(4835319..4835927) Rhodopseudomonas palustris BisA53 4362016 YP_783227.1 CDS RPE_4323 NC_008435.1 4836127 4838448 R PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rpd:RPD_3715 carbon-monoxide dehydrogenase; carbon-monoxide dehydrogenase complement(4836127..4838448) Rhodopseudomonas palustris BisA53 4362017 YP_783228.1 CDS RPE_4324 NC_008435.1 4838626 4840161 R PFAM: AMP-dependent synthetase and ligase; KEGG: rpb:RPB_4229 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(4838626..4840161) Rhodopseudomonas palustris BisA53 4362018 YP_783229.1 CDS RPE_4325 NC_008435.1 4840328 4840741 R KEGG: rpc:RPC_1349 hypothetical protein; hypothetical protein complement(4840328..4840741) Rhodopseudomonas palustris BisA53 4362019 YP_783230.1 CDS RPE_4326 NC_008435.1 4840948 4841790 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rpb:RPB_4234 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase 4840948..4841790 Rhodopseudomonas palustris BisA53 4362020 YP_783231.1 CDS RPE_4327 NC_008435.1 4842089 4842703 D PFAM: Glutathione S-transferase, N-terminal domain; KEGG: rpd:RPD_4086 glutathione S-transferase-like; glutathione S-transferase 4842089..4842703 Rhodopseudomonas palustris BisA53 4362021 YP_783232.1 CDS RPE_4328 NC_008435.1 4842720 4843262 R TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: rpc:RPC_1345 methylated-DNA--protein-cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(4842720..4843262) Rhodopseudomonas palustris BisA53 4362022 YP_783233.1 CDS RPE_4329 NC_008435.1 4843295 4844392 R PFAM: glycosyl transferase, group 1; KEGG: rpc:RPC_1342 glycosyl transferase, group 1; group 1 glycosyl transferase complement(4843295..4844392) Rhodopseudomonas palustris BisA53 4362023 YP_783234.1 CDS RPE_4330 NC_008435.1 4844477 4845628 R PFAM: glycosyl transferase, group 1; KEGG: gox:GOX1614 putative hexosyltransferase; group 1 glycosyl transferase complement(4844477..4845628) Rhodopseudomonas palustris BisA53 4362024 YP_783235.1 CDS RPE_4331 NC_008435.1 4845759 4847195 D PFAM: O-antigen polymerase; KEGG: rpc:RPC_1341 O-antigen polymerase; O-antigen polymerase 4845759..4847195 Rhodopseudomonas palustris BisA53 4362025 YP_783236.1 CDS RPE_4332 NC_008435.1 4847156 4847752 R KEGG: rpc:RPC_1340 hypothetical protein; hypothetical protein complement(4847156..4847752) Rhodopseudomonas palustris BisA53 4362026 YP_783237.1 CDS RPE_4333 NC_008435.1 4847988 4849535 R PFAM: Animal heme peroxidase; KEGG: gvi:glr3599 hypothetical protein; heme peroxidase complement(4847988..4849535) Rhodopseudomonas palustris BisA53 4362027 YP_783238.1 CDS RPE_4334 NC_008435.1 4849801 4850073 R hypothetical protein complement(4849801..4850073) Rhodopseudomonas palustris BisA53 4362028 YP_783239.1 CDS RPE_4335 NC_008435.1 4856717 4858789 D PFAM: peptidase M23B; KEGG: rpc:RPC_4275 peptidase M23B; peptidase M23B 4856717..4858789 Rhodopseudomonas palustris BisA53 4362034 YP_783240.1 CDS RPE_4336 NC_008435.1 4859001 4860629 D KEGG: rpa:RPA4432 NHL repeat; NHL repeat-containing protein 4859001..4860629 Rhodopseudomonas palustris BisA53 4362035 YP_783241.1 CDS RPE_4337 NC_008435.1 4860685 4863324 R PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: rpd:RPD_4095 ATPase AAA-2; ATPase complement(4860685..4863324) Rhodopseudomonas palustris BisA53 4362036 YP_783242.1 CDS RPE_4338 NC_008435.1 4863559 4864320 R TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_4278 hypothetical protein; hypothetical protein complement(4863559..4864320) Rhodopseudomonas palustris BisA53 4362037 YP_783243.1 CDS RPE_4339 NC_008435.1 4864610 4865302 R TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_4280 methionine biosynthesis MetW; methionine biosynthesis MetW complement(4864610..4865302) Rhodopseudomonas palustris BisA53 4362038 YP_783244.1 CDS metX NC_008435.1 4865304 4866506 R Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase complement(4865304..4866506) Rhodopseudomonas palustris BisA53 4362039 YP_783245.1 CDS RPE_4341 NC_008435.1 4866851 4867702 D PFAM: Chorismate mutase; KEGG: rpb:RPB_4253 chorismate mutase; hypothetical protein 4866851..4867702 Rhodopseudomonas palustris BisA53 4362040 YP_783246.1 CDS RPE_4342 NC_008435.1 4867730 4868827 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 4867730..4868827 Rhodopseudomonas palustris BisA53 4362041 YP_783247.1 CDS RPE_4343 NC_008435.1 4868824 4869759 D dual function enzyme catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate; cyclohexadienyl dehydrogenase 4868824..4869759 Rhodopseudomonas palustris BisA53 4362042 YP_783248.1 CDS RPE_4344 NC_008435.1 4869915 4870406 D hypothetical protein 4869915..4870406 Rhodopseudomonas palustris BisA53 4362043 YP_783249.1 CDS RPE_4345 NC_008435.1 4870990 4871766 R PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; Cupin 2, conserved barrel domain protein; KEGG: bxe:Bxe_A1049 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(4870990..4871766) Rhodopseudomonas palustris BisA53 4362044 YP_783250.1 CDS RPE_4346 NC_008435.1 4871788 4872162 R PFAM: Cupin 2, conserved barrel domain protein; KEGG: pca:Pcar_2409 mannose-6-phosphate isomerase-like; cupin complement(4871788..4872162) Rhodopseudomonas palustris BisA53 4362045 YP_783251.1 CDS RPE_4347 NC_008435.1 4872541 4872801 D hypothetical protein 4872541..4872801 Rhodopseudomonas palustris BisA53 4362046 YP_783252.1 CDS RPE_4348 NC_008435.1 4872944 4873150 R PFAM: protein of unknown function UPF0150; KEGG: rpb:RPB_4320 protein of unknown function UPF0150; hypothetical protein complement(4872944..4873150) Rhodopseudomonas palustris BisA53 4362047 YP_783253.1 CDS RPE_4349 NC_008435.1 4873683 4874663 R PFAM: Mg2+ transporter protein, CorA family protein; KEGG: rpc:RPC_4290 Mg2+ transporter protein, CorA-like; Mg2+ transporter complement(4873683..4874663) Rhodopseudomonas palustris BisA53 4362048 YP_783254.1 CDS RPE_4350 NC_008435.1 4875001 4875687 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpb:RPB_1167 ErfK/YbiS/YcfS/YnhG; hypothetical protein 4875001..4875687 Rhodopseudomonas palustris BisA53 4362049 YP_783255.1 CDS RPE_4351 NC_008435.1 4875849 4876571 R PFAM: Extensin family protein; KEGG: rpc:RPC_4292 extensin-like; extensin family protein complement(4875849..4876571) Rhodopseudomonas palustris BisA53 4362050 YP_783256.1 CDS RPE_4352 NC_008435.1 4876971 4878599 D activates fatty acids by binding to coenzyme A; putative acyl-CoA synthetase 4876971..4878599 Rhodopseudomonas palustris BisA53 4362051 YP_783257.1 CDS RPE_4353 NC_008435.1 4878737 4879093 R PFAM: protein of unknown function DUF559; KEGG: nwi:Nwi_2534 protein of unknown function DUF559; hypothetical protein complement(4878737..4879093) Rhodopseudomonas palustris BisA53 4362052 YP_783258.1 CDS RPE_4354 NC_008435.1 4879306 4880151 D KEGG: rpc:RPC_4295 hypothetical protein; hypothetical protein 4879306..4880151 Rhodopseudomonas palustris BisA53 4362053 YP_783259.1 CDS RPE_4355 NC_008435.1 4880272 4881204 R PFAM: beta-lactamase domain protein; KEGG: rpc:RPC_4296 beta-lactamase-like; beta-lactamase domain-containing protein complement(4880272..4881204) Rhodopseudomonas palustris BisA53 4362054 YP_783260.1 CDS RPE_4356 NC_008435.1 4881488 4882702 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpd:RPD_1264 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(4881488..4882702) Rhodopseudomonas palustris BisA53 4362055 YP_783261.1 CDS RPE_4357 NC_008435.1 4882778 4883854 R PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: rpc:RPC_4298 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(4882778..4883854) Rhodopseudomonas palustris BisA53 4362056 YP_783262.1 CDS RPE_4358 NC_008435.1 4883943 4884302 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rpd:RPD_1262 alkylhydroperoxidase AhpD core; alkylhydroperoxidase complement(4883943..4884302) Rhodopseudomonas palustris BisA53 4362057 YP_783263.1 CDS RPE_4359 NC_008435.1 4884383 4884574 R KEGG: rpc:RPC_4302 hypothetical protein; hypothetical protein complement(4884383..4884574) Rhodopseudomonas palustris BisA53 4362058 YP_783264.1 CDS RPE_4360 NC_008435.1 4884705 4885454 R PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rpc:RPC_4303 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator complement(4884705..4885454) Rhodopseudomonas palustris BisA53 4362059 YP_783265.1 CDS RPE_4361 NC_008435.1 4885743 4886714 D SMART: PDZ/DHR/GLGF domain protein; KEGG: rpc:RPC_4304 PDZ/DHR/GLGF; PDZ/DHR/GLGF domain-containing protein 4885743..4886714 Rhodopseudomonas palustris BisA53 4362060 YP_783266.1 CDS RPE_4362 NC_008435.1 4886727 4887035 R TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: rpc:RPC_4756 putative plasmid maintenance system antidote protein, XRE family; XRE family plasmid maintenance system antidote protein complement(4886727..4887035) Rhodopseudomonas palustris BisA53 4362061 YP_783267.1 CDS RPE_4363 NC_008435.1 4887251 4889095 D KEGG: bmb:BruAb1_0096 IlvD, dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxy-acid dehydratase 4887251..4889095 Rhodopseudomonas palustris BisA53 4362062 YP_783268.1 CDS RPE_4364 NC_008435.1 4890315 4890881 R KEGG: rpc:RPC_4320 hypothetical protein; hypothetical protein complement(4890315..4890881) Rhodopseudomonas palustris BisA53 4362063 YP_783269.1 CDS RPE_4365 NC_008435.1 4890968 4891366 R PFAM: regulatory protein, LysR; KEGG: rpc:RPC_4319 putative transcriptional regulator, ModE family; ModE family transcriptional regulator complement(4890968..4891366) Rhodopseudomonas palustris BisA53 4362064 YP_783270.1 CDS RPE_4366 NC_008435.1 4891426 4892289 R KEGG: rpc:RPC_4318 ModD protein; TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase; modD protein complement(4891426..4892289) Rhodopseudomonas palustris BisA53 4362065 YP_783271.1 CDS RPE_4367 NC_008435.1 4892557 4893174 D KEGG: rpc:RPC_4317 hypothetical protein; hypothetical protein 4892557..4893174 Rhodopseudomonas palustris BisA53 4362066 YP_783272.1 CDS RPE_4368 NC_008435.1 4893171 4894043 D KEGG: rpc:RPC_4316 hypothetical protein; hypothetical protein 4893171..4894043 Rhodopseudomonas palustris BisA53 4362067 YP_783273.1 CDS RPE_4369 NC_008435.1 4894057 4894494 D TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase and related; KEGG: rpc:RPC_4315 nitrogenase-associated protein; nitrogenase-associated protein 4894057..4894494 Rhodopseudomonas palustris BisA53 4362068 YP_783274.1 CDS RPE_4370 NC_008435.1 4894616 4895377 D PFAM: protein of unknown function DUF88; KEGG: rpa:RPA3960 hypothetical protein; hypothetical protein 4894616..4895377 Rhodopseudomonas palustris BisA53 4362069 YP_783275.1 CDS RPE_4371 NC_008435.1 4895441 4897114 R KEGG: rpb:RPB_1632 hypothetical protein; hypothetical protein complement(4895441..4897114) Rhodopseudomonas palustris BisA53 4362070 YP_783276.1 CDS RPE_4372 NC_008435.1 4897600 4898412 R PFAM: OmpA/MotB domain protein; KEGG: rpa:RPA2897 possible chemotaxis protein MotB2; OmpA/MotB domain-containing protein complement(4897600..4898412) Rhodopseudomonas palustris BisA53 4362071 YP_783277.1 CDS RPE_4373 NC_008435.1 4898757 4900403 R KEGG: rpc:RPC_2948 hypothetical protein; hypothetical protein complement(4898757..4900403) Rhodopseudomonas palustris BisA53 4362072 YP_783278.1 CDS RPE_4374 NC_008435.1 4900665 4903700 R KEGG: son:SO1571 hypothetical protein; hypothetical protein complement(4900665..4903700) Rhodopseudomonas palustris BisA53 4362073 YP_783279.1 CDS RPE_4375 NC_008435.1 4903714 4905855 R KEGG: son:SO1571 hypothetical protein; hypothetical protein complement(4903714..4905855) Rhodopseudomonas palustris BisA53 4362074 YP_783280.1 CDS RPE_4376 NC_008435.1 4905837 4909880 R KEGG: lic:LIC13201 adenylate/guanylate cyclase; ATPase-like protein complement(4905837..4909880) Rhodopseudomonas palustris BisA53 4362075 YP_783281.1 CDS RPE_4377 NC_008435.1 4910113 4910352 D hypothetical protein 4910113..4910352 Rhodopseudomonas palustris BisA53 4362076 YP_783282.1 CDS RPE_4378 NC_008435.1 4910598 4910834 D KEGG: bja:bsl0098 hypothetical protein; hypothetical protein 4910598..4910834 Rhodopseudomonas palustris BisA53 4362077 YP_783283.1 CDS RPE_4379 NC_008435.1 4910851 4911087 D hypothetical protein 4910851..4911087 Rhodopseudomonas palustris BisA53 4362078 YP_783284.1 CDS RPE_4380 NC_008435.1 4911249 4912232 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC, N-terminal domain; KEGG: rpc:RPC_4305 SUA5/YciO/YrdC/YwlC; Sua5/YciO/YrdC/YwlC 4911249..4912232 Rhodopseudomonas palustris BisA53 4362080 YP_783285.1 CDS RPE_4381 NC_008435.1 4912260 4913672 D PFAM: FAD linked oxidase domain protein; KEGG: rpc:RPC_4322 FAD linked oxidase-like; FAD linked oxidase domain-containing protein 4912260..4913672 Rhodopseudomonas palustris BisA53 4362081 YP_783286.1 CDS RPE_4382 NC_008435.1 4913710 4914948 R KEGG: nfa:nfa55970 hypothetical protein; hypothetical protein complement(4913710..4914948) Rhodopseudomonas palustris BisA53 4362082 YP_783287.1 CDS RPE_4383 NC_008435.1 4915051 4915827 R PFAM: protein of unknown function DUF159; KEGG: rpc:RPC_4325 protein of unknown function DUF159; hypothetical protein complement(4915051..4915827) Rhodopseudomonas palustris BisA53 4362083 YP_783288.1 CDS RPE_4384 NC_008435.1 4915893 4916405 D KEGG: rpc:RPC_4326 hypothetical protein; hypothetical protein 4915893..4916405 Rhodopseudomonas palustris BisA53 4362084 YP_783289.1 CDS RPE_4385 NC_008435.1 4916410 4916844 D PFAM: NUDIX hydrolase; KEGG: rpc:RPC_4327 NUDIX hydrolase; NUDIX hydrolase 4916410..4916844 Rhodopseudomonas palustris BisA53 4362085 YP_783290.1 CDS RPE_4386 NC_008435.1 4916919 4917296 D TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_4328 hypothetical protein; hypothetical protein 4916919..4917296 Rhodopseudomonas palustris BisA53 4362086 YP_783291.1 CDS RPE_4387 NC_008435.1 4917457 4917720 D KEGG: rpc:RPC_4329 hypothetical protein; hypothetical protein 4917457..4917720 Rhodopseudomonas palustris BisA53 4362087 YP_783292.1 CDS RPE_4388 NC_008435.1 4917860 4919194 R PFAM: transposase, IS4 family protein; KEGG: sth:STH2086 transposase; transposase, IS4 family protein complement(4917860..4919194) Rhodopseudomonas palustris BisA53 4362088 YP_783293.1 CDS RPE_4389 NC_008435.1 4919422 4920756 R Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase complement(4919422..4920756) Rhodopseudomonas palustris BisA53 4362089 YP_783294.1 CDS RPE_4390 NC_008435.1 4920912 4921793 D PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: rpc:RPC_4331 glycine cleavage T protein (aminomethyl transferase); glycine cleavage T protein (aminomethyl transferase) 4920912..4921793 Rhodopseudomonas palustris BisA53 4362090 YP_783295.1 CDS RPE_4391 NC_008435.1 4921790 4922443 D KEGG: bja:bll2553 3-methyladenine-DNA glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 4921790..4922443 Rhodopseudomonas palustris BisA53 4362091 YP_783296.1 CDS RPE_4392 NC_008435.1 4922434 4922604 R KEGG: rpd:RPD_1236 hypothetical protein; hypothetical protein complement(4922434..4922604) Rhodopseudomonas palustris BisA53 4362092 YP_783297.1 CDS RPE_4393 NC_008435.1 4922787 4923401 D PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: rpa:RPA1065 metal dependent phosphohydrolase; metal dependent phosphohydrolase 4922787..4923401 Rhodopseudomonas palustris BisA53 4362093 YP_783298.1 CDS RPE_4394 NC_008435.1 4923479 4923985 D KEGG: rpc:RPC_4334 hypothetical protein; hypothetical protein 4923479..4923985 Rhodopseudomonas palustris BisA53 4362094 YP_783299.1 CDS RPE_4395 NC_008435.1 4923982 4924959 D KEGG: rpc:RPC_4335 hypothetical protein; hypothetical protein 4923982..4924959 Rhodopseudomonas palustris BisA53 4362095 YP_783300.1 CDS RPE_4396 NC_008435.1 4925039 4925563 D KEGG: bja:blr5636 hypothetical protein; hypothetical protein 4925039..4925563 Rhodopseudomonas palustris BisA53 4362096 YP_783301.1 CDS RPE_4397 NC_008435.1 4925569 4927464 D PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: ret:RHE_CH02180 putative adenylate cyclase protein; adenylate/guanylate cyclase 4925569..4927464 Rhodopseudomonas palustris BisA53 4362097 YP_783302.1 CDS RPE_4398 NC_008435.1 4927461 4928045 R KEGG: rpc:RPC_4336 hypothetical protein; hypothetical protein complement(4927461..4928045) Rhodopseudomonas palustris BisA53 4362098 YP_783303.1 CDS RPE_4399 NC_008435.1 4928164 4929144 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpd:RPD_1230 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase complement(4928164..4929144) Rhodopseudomonas palustris BisA53 4362099 YP_783304.1 CDS RPE_4400 NC_008435.1 4929515 4930627 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 4929515..4930627 Rhodopseudomonas palustris BisA53 4362100 YP_783305.1 CDS RPE_4401 NC_008435.1 4930685 4932292 D catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 4930685..4932292 Rhodopseudomonas palustris BisA53 4362101 YP_783306.1 CDS RPE_4402 NC_008435.1 4932308 4933189 D KEGG: rpb:RPB_1105 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 4932308..4933189 Rhodopseudomonas palustris BisA53 4362102 YP_783307.1 CDS RPE_4403 NC_008435.1 4933504 4934166 D KEGG: rpc:RPC_4341 hypothetical protein; hypothetical protein 4933504..4934166 Rhodopseudomonas palustris BisA53 4362103 YP_783308.1 CDS RPE_4404 NC_008435.1 4934346 4935809 R PFAM: cell wall hydrolase, SleB; KEGG: rpc:RPC_4342 cell wall hydrolase, SleB; cell wall hydrolase SleB complement(4934346..4935809) Rhodopseudomonas palustris BisA53 4362104 YP_783309.1 CDS RPE_4405 NC_008435.1 4936218 4939241 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase complement(4936218..4939241) Rhodopseudomonas palustris BisA53 4362105 YP_783310.1 CDS RPE_4406 NC_008435.1 4939335 4939478 R KEGG: rpc:RPC_4344 hypothetical protein; hypothetical protein complement(4939335..4939478) Rhodopseudomonas palustris BisA53 4362106 YP_783311.1 CDS RPE_4407 NC_008435.1 4939780 4940124 D PFAM: protein of unknown function DUF1236; KEGG: rpc:RPC_4345 hypothetical protein; hypothetical protein 4939780..4940124 Rhodopseudomonas palustris BisA53 4362107 YP_783312.1 CDS RPE_4408 NC_008435.1 4940189 4941286 R KEGG: rpd:RPD_1222 hypothetical protein; hypothetical protein complement(4940189..4941286) Rhodopseudomonas palustris BisA53 4362108 YP_783313.1 CDS glyS NC_008435.1 4941607 4943841 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(4941607..4943841) Rhodopseudomonas palustris BisA53 4362109 YP_783314.1 CDS RPE_4410 NC_008435.1 4943841 4944275 R PFAM: protein of unknown function DUF559; KEGG: rpd:RPD_1220 protein of unknown function DUF559; hypothetical protein complement(4943841..4944275) Rhodopseudomonas palustris BisA53 4362110 YP_783315.1 CDS glyQ NC_008435.1 4944306 4945268 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(4944306..4945268) Rhodopseudomonas palustris BisA53 4362111 YP_783316.1 CDS RPE_4412 NC_008435.1 4945773 4945967 R KEGG: rpc:RPC_4350 hypothetical protein; hypothetical protein complement(4945773..4945967) Rhodopseudomonas palustris BisA53 4362112 YP_783317.1 CDS RPE_4413 NC_008435.1 4946067 4946969 R PFAM: Enoyl-CoA hydratase/isomerase; peptidase S49; KEGG: rpc:RPC_4351 peptidase S49; peptidase S49 complement(4946067..4946969) Rhodopseudomonas palustris BisA53 4362113 YP_783318.1 CDS RPE_4414 NC_008435.1 4947210 4947956 R PFAM: methyltransferase small; Methyltransferase type 12; KEGG: rpc:RPC_4352 methyltransferase small; methyltransferase small complement(4947210..4947956) Rhodopseudomonas palustris BisA53 4362114 YP_783319.1 CDS RPE_4415 NC_008435.1 4947967 4948194 R KEGG: rpd:RPD_1215 hypothetical protein; hypothetical protein complement(4947967..4948194) Rhodopseudomonas palustris BisA53 4362115 YP_783320.1 CDS RPE_4416 NC_008435.1 4948381 4949406 D PFAM: Polyprenyl synthetase; KEGG: rpa:RPA1040 octaprenyl-diphosphate synthase; farnesyltranstransferase 4948381..4949406 Rhodopseudomonas palustris BisA53 4362116 YP_783321.1 CDS RPE_4417 NC_008435.1 4949437 4949781 R hypothetical protein complement(4949437..4949781) Rhodopseudomonas palustris BisA53 4362117 YP_783322.1 CDS RPE_4418 NC_008435.1 4949810 4950202 D hypothetical protein 4949810..4950202 Rhodopseudomonas palustris BisA53 4362118 YP_783323.1 CDS RPE_4419 NC_008435.1 4950199 4951095 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(4950199..4951095) Rhodopseudomonas palustris BisA53 4362119 YP_783324.1 CDS RPE_4420 NC_008435.1 4951101 4952882 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpc:RPC_4357 tetratricopeptide TPR_2; TPR repeat-containing protein complement(4951101..4952882) Rhodopseudomonas palustris BisA53 4362120 YP_783325.1 CDS RPE_4421 NC_008435.1 4953125 4954783 R PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: rpc:RPC_4358 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase complement(4953125..4954783) Rhodopseudomonas palustris BisA53 4362121 YP_783326.1 CDS RPE_4422 NC_008435.1 4955109 4955930 D TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: rpc:RPC_4359 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-like protein 4955109..4955930 Rhodopseudomonas palustris BisA53 4362122 YP_783327.1 CDS RPE_4423 NC_008435.1 4955936 4957447 R KEGG: rpc:RPC_4360 hypothetical protein; hypothetical protein complement(4955936..4957447) Rhodopseudomonas palustris BisA53 4362123 YP_783328.1 CDS rnhB NC_008435.1 4957575 4958411 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(4957575..4958411) Rhodopseudomonas palustris BisA53 4362124 YP_783329.1 CDS RPE_4425 NC_008435.1 4958555 4959763 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rpc:RPC_4362 radical SAM; radical SAM domain-containing protein complement(4958555..4959763) Rhodopseudomonas palustris BisA53 4362125 YP_783330.1 CDS RPE_4426 NC_008435.1 4959942 4960502 D KEGG: rpc:RPC_4363 glycosyl transferase, family 2; glycosyl transferase family protein 4959942..4960502 Rhodopseudomonas palustris BisA53 4362126 YP_783331.1 CDS RPE_4427 NC_008435.1 4960591 4961541 D PFAM: GCN5-related N-acetyltransferase; regulatory protein, MarR; KEGG: bja:bll2512 putative acetyltransferase; MarR family transcriptional regulator 4960591..4961541 Rhodopseudomonas palustris BisA53 4362127 YP_783332.1 CDS RPE_4428 NC_008435.1 4961594 4961836 R hypothetical protein complement(4961594..4961836) Rhodopseudomonas palustris BisA53 4362128 YP_783333.1 CDS RPE_4429 NC_008435.1 4961868 4962416 R TIGRFAM: molybdenum cofactor synthesis domain; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: rpd:RPD_1202 molybdenum cofactor biosynthesis protein; molybdenum cofactor biosynthesis protein B complement(4961868..4962416) Rhodopseudomonas palustris BisA53 4362129 YP_783334.1 CDS RPE_4430 NC_008435.1 4962578 4963504 R PFAM: protein of unknown function, zinc metallopeptidase putative; KEGG: rpc:RPC_4365 protein of unknown function, zinc metallopeptidase putative; hypothetical protein complement(4962578..4963504) Rhodopseudomonas palustris BisA53 4362130 YP_783335.1 CDS RPE_4431 NC_008435.1 4963779 4964918 D PFAM: DNA methylase N-4/N-6 domain protein; KEGG: rpc:RPC_4366 DNA methylase N-4/N-6; DNA methylase N-4/N-6 domain-containing protein 4963779..4964918 Rhodopseudomonas palustris BisA53 4362131 YP_783336.1 CDS RPE_4432 NC_008435.1 4965059 4965397 D KEGG: rpc:RPC_4367 hypothetical protein; hypothetical protein 4965059..4965397 Rhodopseudomonas palustris BisA53 4362132 YP_783337.1 CDS RPE_4433 NC_008435.1 4965434 4966534 R KEGG: rpc:RPC_4368 A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; A/G-specific adenine glycosylase complement(4965434..4966534) Rhodopseudomonas palustris BisA53 4362133 YP_783338.1 CDS RPE_4434 NC_008435.1 4966616 4966936 D TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: rpc:RPC_4370 plasmid maintenance system antidote protein, XRE family; XRE family plasmid maintenance system antidote protein 4966616..4966936 Rhodopseudomonas palustris BisA53 4362134 YP_783339.1 CDS RPE_4435 NC_008435.1 4966976 4967452 D PFAM: protein of unknown function DUF1159; KEGG: rpc:RPC_4371 protein of unknown function DUF1159; hypothetical protein 4966976..4967452 Rhodopseudomonas palustris BisA53 4362135 YP_783340.1 CDS RPE_4436 NC_008435.1 4967554 4968225 D TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpc:RPC_4372 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal 4967554..4968225 Rhodopseudomonas palustris BisA53 4362136 YP_783341.1 CDS RPE_4437 NC_008435.1 4968490 4969158 R KEGG: rpc:RPC_4379 hypothetical protein; hypothetical protein complement(4968490..4969158) Rhodopseudomonas palustris BisA53 4362137 YP_783342.1 CDS RPE_4438 NC_008435.1 4969215 4970033 R KEGG: rpc:RPC_4378 hypothetical protein; hypothetical protein complement(4969215..4970033) Rhodopseudomonas palustris BisA53 4362138 YP_783343.1 CDS RPE_4439 NC_008435.1 4970112 4970411 R hypothetical protein complement(4970112..4970411) Rhodopseudomonas palustris BisA53 4362139 YP_783344.1 CDS RPE_4440 NC_008435.1 4970393 4971505 R PFAM: peptidase M48, Ste24p; KEGG: rpb:RPB_4314 peptidase M48, Ste24p; peptidase M48, Ste24p complement(4970393..4971505) Rhodopseudomonas palustris BisA53 4362140 YP_783345.1 CDS RPE_4441 NC_008435.1 4971741 4972298 R PFAM: LemA family protein; KEGG: rpb:RPB_4313 LemA; LemA family protein complement(4971741..4972298) Rhodopseudomonas palustris BisA53 4362141 YP_783346.1 CDS RPE_4442 NC_008435.1 4972457 4973449 R KEGG: rpd:RPD_1193 methyltransferase type 11; hypothetical protein complement(4972457..4973449) Rhodopseudomonas palustris BisA53 4362142 YP_783347.1 CDS RPE_4443 NC_008435.1 4973706 4977170 R TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: rpc:RPC_4374 chromosome segregation protein SMC; chromosome segregation protein SMC complement(4973706..4977170) Rhodopseudomonas palustris BisA53 4362143 YP_783348.1 CDS RPE_4444 NC_008435.1 4977940 4978401 R KEGG: rpa:RPA3586 hypothetical protein; hypothetical protein complement(4977940..4978401) Rhodopseudomonas palustris BisA53 4362144 YP_783349.1 CDS RPE_4445 NC_008435.1 4978648 4979382 R KEGG: nmu:Nmul_A0122 hypothetical protein; hypothetical protein complement(4978648..4979382) Rhodopseudomonas palustris BisA53 4362145 YP_783350.1 CDS RPE_4447 NC_008435.1 4981421 4983583 R trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II; anthranilate synthase complement(4981421..4983583) Rhodopseudomonas palustris BisA53 4362147 YP_783351.1 CDS RPE_4448 NC_008435.1 4983816 4984463 R KEGG: rpc:RPC_4391 hypothetical protein; hypothetical protein complement(4983816..4984463) Rhodopseudomonas palustris BisA53 4362148 YP_783352.1 CDS RPE_4449 NC_008435.1 4984460 4984876 R PFAM: endodeoxyribonuclease RusA; KEGG: rpc:RPC_4392 hypothetical protein; endodeoxyribonuclease RusA complement(4984460..4984876) Rhodopseudomonas palustris BisA53 4362149 YP_783353.1 CDS RPE_4450 NC_008435.1 4985040 4985660 R PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpd:RPD_4215 methyltransferase type 12; type 11 methyltransferase complement(4985040..4985660) Rhodopseudomonas palustris BisA53 4362150 YP_783354.1 CDS RPE_4451 NC_008435.1 4985686 4987008 R PFAM: ABC-1 domain protein; KEGG: rpd:RPD_4216 ABC-1; hypothetical protein complement(4985686..4987008) Rhodopseudomonas palustris BisA53 4362151 YP_783355.1 CDS RPE_4452 NC_008435.1 4987573 4987794 D KEGG: rpc:RPC_4390 hypothetical protein; hypothetical protein 4987573..4987794 Rhodopseudomonas palustris BisA53 4362152 YP_783356.1 CDS RPE_4453 NC_008435.1 4987751 4987969 R PFAM: PhnA protein; KEGG: rpc:RPC_4393 PhnA protein; PhnA protein complement(4987751..4987969) Rhodopseudomonas palustris BisA53 4362153 YP_783357.1 CDS RPE_4454 NC_008435.1 4988049 4988324 R KEGG: rpc:RPC_4395 hypothetical protein; hypothetical protein complement(4988049..4988324) Rhodopseudomonas palustris BisA53 4362154 YP_783358.1 CDS RPE_4455 NC_008435.1 4988667 4990577 R PFAM: AMP-dependent synthetase and ligase; KEGG: rpc:RPC_4396 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(4988667..4990577) Rhodopseudomonas palustris BisA53 4362155 YP_783359.1 CDS RPE_4456 NC_008435.1 4990710 4991471 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpc:RPC_4397 tetratricopeptide TPR_2; TPR repeat-containing protein complement(4990710..4991471) Rhodopseudomonas palustris BisA53 4362156 YP_783360.1 CDS RPE_4457 NC_008435.1 4991478 4992281 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpb:RPB_4328 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(4991478..4992281) Rhodopseudomonas palustris BisA53 4362157 YP_783361.1 CDS RPE_4458 NC_008435.1 4992542 4994374 D KEGG: nha:Nham_2708 hypothetical protein; hypothetical protein 4992542..4994374 Rhodopseudomonas palustris BisA53 4362158 YP_783362.1 CDS RPE_4459 NC_008435.1 4994403 4996178 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rpa:RPA4507 elongator protein 3/MiaB/NifB; radical SAM domain-containing protein complement(4994403..4996178) Rhodopseudomonas palustris BisA53 4362159 YP_783363.1 CDS RPE_4460 NC_008435.1 4996339 4996713 R KEGG: rpc:RPC_4398 hypothetical protein; hypothetical protein complement(4996339..4996713) Rhodopseudomonas palustris BisA53 4362160 YP_783364.1 CDS RPE_4461 NC_008435.1 4996710 4998833 R TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpc:RPC_4399 TRAP transporter, 4TM/12TM fusion protein; TRAP transporter, 4TM/12TM fusion protein complement(4996710..4998833) Rhodopseudomonas palustris BisA53 4362161 YP_783365.1 CDS RPE_4462 NC_008435.1 4998993 4999940 R TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: rpc:RPC_4400 TRAP transporter solute receptor, TAXI family; TRAP transporter solute receptor TAXI family protein complement(4998993..4999940) Rhodopseudomonas palustris BisA53 4362162 YP_783366.1 CDS RPE_4463 NC_008435.1 5000158 5001165 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Uncharacterized protein UPF0065; KEGG: rpb:RPB_4334 twin-arginine translocation pathway signal; hypothetical protein 5000158..5001165 Rhodopseudomonas palustris BisA53 4362163 YP_783367.1 CDS RPE_4464 NC_008435.1 5001647 5003467 D KEGG: gsu:GSU2675 hypothetical protein; hypothetical protein 5001647..5003467 Rhodopseudomonas palustris BisA53 4362164 YP_783368.1 CDS RPE_4465 NC_008435.1 5003635 5004852 D PFAM: EAL domain protein; KEGG: rpd:RPD_4230 putative cylclic diguanylate phosphodiesterase; response regulator receiver modulated diguanylate phosphodiesterase 5003635..5004852 Rhodopseudomonas palustris BisA53 4362165 YP_783369.1 CDS RPE_4466 NC_008435.1 5004863 5005339 R KEGG: rpc:RPC_4403 hypothetical protein; hypothetical protein complement(5004863..5005339) Rhodopseudomonas palustris BisA53 4362166 YP_783370.1 CDS RPE_4467 NC_008435.1 5005599 5005910 D KEGG: rpc:RPC_4404 hypothetical protein; hypothetical protein 5005599..5005910 Rhodopseudomonas palustris BisA53 4362167 YP_783371.1 CDS RPE_4468 NC_008435.1 5005959 5008016 R KEGG: zmo:ZMO1548 squalene--hopene cyclase; TIGRFAM: squalene/oxidosqualene cyclases; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase; squalene cyclase complement(5005959..5008016) Rhodopseudomonas palustris BisA53 4362168 YP_783372.1 CDS RPE_4469 NC_008435.1 5008044 5008412 D hypothetical protein 5008044..5008412 Rhodopseudomonas palustris BisA53 4362169 YP_783373.1 CDS RPE_4470 NC_008435.1 5008415 5009545 R KEGG: rpb:RPB_4338 hypothetical protein; hypothetical protein complement(5008415..5009545) Rhodopseudomonas palustris BisA53 4362170 YP_783374.1 CDS RPE_4471 NC_008435.1 5009864 5010490 R PFAM: NUDIX hydrolase; KEGG: rpb:RPB_4339 NUDIX hydrolase; NUDIX hydrolase complement(5009864..5010490) Rhodopseudomonas palustris BisA53 4362171 YP_783375.1 CDS RPE_4472 NC_008435.1 5010557 5010985 D PFAM: thioesterase superfamily protein; KEGG: rpb:RPB_4340 thioesterase superfamily; thioesterase superfamily protein 5010557..5010985 Rhodopseudomonas palustris BisA53 4362172 YP_783376.1 CDS RPE_4473 NC_008435.1 5011146 5011394 D PFAM: helix-turn-helix domain protein; KEGG: rru:Rru_A2442 transcriptional regulator, XRE family; XRE family transcriptional regulator 5011146..5011394 Rhodopseudomonas palustris BisA53 4362173 YP_783377.1 CDS RPE_4476 NC_008435.1 5012841 5014100 R PFAM: HipA domain protein; KEGG: sat:SYN_02732 protein HipA; HipA domain-containing protein complement(5012841..5014100) Rhodopseudomonas palustris BisA53 4362175 YP_783378.1 CDS RPE_4477 NC_008435.1 5014097 5014324 R PFAM: helix-turn-helix domain protein; KEGG: ftl:FTL_1126 transcriptional regulator; XRE family transcriptional regulator complement(5014097..5014324) Rhodopseudomonas palustris BisA53 4362176 YP_783379.1 CDS RPE_4478 NC_008435.1 5014584 5015096 D hypothetical protein 5014584..5015096 Rhodopseudomonas palustris BisA53 4362177 YP_783380.1 CDS RPE_4479 NC_008435.1 5015957 5016142 R PFAM: protein of unknown function DUF329; KEGG: rpc:RPC_4413 protein of unknown function DUF329; zinc-binding protein complement(5015957..5016142) Rhodopseudomonas palustris BisA53 4362179 YP_783381.1 CDS RPE_4480 NC_008435.1 5016132 5016755 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(5016132..5016755) Rhodopseudomonas palustris BisA53 4362180 YP_783382.1 CDS RPE_4481 NC_008435.1 5016885 5018039 R KEGG: rpb:RPB_4347 hypothetical protein; hypothetical protein complement(5016885..5018039) Rhodopseudomonas palustris BisA53 4362181 YP_783383.1 CDS RPE_4482 NC_008435.1 5018134 5018604 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: rpc:RPC_4415 protein tyrosine phosphatase; protein tyrosine phosphatase complement(5018134..5018604) Rhodopseudomonas palustris BisA53 4362182 YP_783384.1 CDS RPE_4483 NC_008435.1 5018663 5019154 R PFAM: Uncharacterised conserved protein UCP032146; KEGG: rpb:RPB_4349 uncharacterised conserved protein UCP032146; hypothetical protein complement(5018663..5019154) Rhodopseudomonas palustris BisA53 4362183 YP_783385.1 CDS hisD NC_008435.1 5019151 5020446 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(5019151..5020446) Rhodopseudomonas palustris BisA53 4362184 YP_783386.1 CDS RPE_4485 NC_008435.1 5020734 5021831 R PFAM: transposase, IS4 family protein; KEGG: rpc:RPC_2070 transposase, IS4; transposase, IS4 family protein complement(5020734..5021831) Rhodopseudomonas palustris BisA53 4362185 YP_783387.1 CDS RPE_4487 NC_008435.1 5023347 5023790 R KEGG: rpd:RPD_4280 hypothetical protein; hypothetical protein complement(5023347..5023790) Rhodopseudomonas palustris BisA53 4362187 YP_783388.1 CDS RPE_4488 NC_008435.1 5023806 5025095 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(5023806..5025095) Rhodopseudomonas palustris BisA53 4362188 YP_783389.1 CDS RPE_4489 NC_008435.1 5025399 5026082 R KEGG: rpc:RPC_4419 hypothetical protein; hypothetical protein complement(5025399..5026082) Rhodopseudomonas palustris BisA53 4362189 YP_783390.1 CDS RPE_4490 NC_008435.1 5026220 5027044 R PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_4420 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(5026220..5027044) Rhodopseudomonas palustris BisA53 4362190 YP_783391.1 CDS RPE_4491 NC_008435.1 5027143 5027643 R KEGG: rpb:RPB_4355 hypothetical protein; hypothetical protein complement(5027143..5027643) Rhodopseudomonas palustris BisA53 4362191 YP_783392.1 CDS RPE_4492 NC_008435.1 5027808 5028728 R PFAM: alpha/beta hydrolase fold; KEGG: bur:Bcep18194_C6868 alpha/beta hydrolase; alpha/beta hydrolase fold protein complement(5027808..5028728) Rhodopseudomonas palustris BisA53 4362192 YP_783393.1 CDS RPE_4493 NC_008435.1 5028778 5029086 R PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: bja:blr1249 hypothetical protein; ethyl tert-butyl ether degradation EthD complement(5028778..5029086) Rhodopseudomonas palustris BisA53 4362193 YP_783394.1 CDS RPE_4494 NC_008435.1 5029156 5030862 R PFAM: cyclic nucleotide-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: rpc:RPC_4421 cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase; cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(5029156..5030862) Rhodopseudomonas palustris BisA53 4362194 YP_783395.1 CDS RPE_4495 NC_008435.1 5031163 5031609 D KEGG: rpc:RPC_4422 hypothetical protein; hypothetical protein 5031163..5031609 Rhodopseudomonas palustris BisA53 4362195 YP_783396.1 CDS RPE_4496 NC_008435.1 5032026 5033168 R PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: rpd:RPD_2373 regulatory protein, LuxR; LuxR family transcriptional regulator complement(5032026..5033168) Rhodopseudomonas palustris BisA53 4362197 YP_783397.1 CDS RPE_4497 NC_008435.1 5033465 5034208 R PFAM: regulatory protein, LuxR; KEGG: rpd:RPD_2372 regulatory protein, LuxR; LuxR family transcriptional regulator complement(5033465..5034208) Rhodopseudomonas palustris BisA53 4362198 YP_783398.1 CDS RPE_4498 NC_008435.1 5034401 5034901 R KEGG: rpd:RPD_2371 hypothetical protein; hypothetical protein complement(5034401..5034901) Rhodopseudomonas palustris BisA53 4362199 YP_783399.1 CDS RPE_4499 NC_008435.1 5035013 5037766 R structural flagella protein; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellin complement(5035013..5037766) Rhodopseudomonas palustris BisA53 4362200 YP_783400.1 CDS RPE_4500 NC_008435.1 5038372 5039493 R TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: dvu:DVU2218 GTP-binding protein, putative; ribosome small subunit-dependent GTPase A complement(5038372..5039493) Rhodopseudomonas palustris BisA53 4362201 YP_783401.1 CDS RPE_4501 NC_008435.1 5039621 5039944 R PFAM: CutA1 divalent ion tolerance protein; KEGG: rpa:RPA0707 putative periplasmic divalent cation resistance protein CutA; CutA1 divalent ion tolerance protein complement(5039621..5039944) Rhodopseudomonas palustris BisA53 4362202 YP_783402.1 CDS RPE_4502 NC_008435.1 5039987 5040202 D TIGRFAM: putative regulatory protein, FmdB family; KEGG: rpd:RPD_0644 hypothetical protein; FmdB family regulatory protein 5039987..5040202 Rhodopseudomonas palustris BisA53 4362203 YP_783403.1 CDS RPE_4503 NC_008435.1 5040221 5041702 R PFAM: ADP-ribosylation/Crystallin J1; SMART: protein tyrosine phosphatase, catalytic region; KEGG: rpc:RPC_0422 ADP-ribosylation/crystallin J1; ADP-ribosylation/crystallin J1 complement(5040221..5041702) Rhodopseudomonas palustris BisA53 4362204 YP_783404.1 CDS RPE_4504 NC_008435.1 5041794 5042525 R KEGG: rpc:RPC_0423 hypothetical protein; hypothetical protein complement(5041794..5042525) Rhodopseudomonas palustris BisA53 4362205 YP_783405.1 CDS RPE_4505 NC_008435.1 5042625 5043830 R KEGG: rpc:RPC_1274 S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase; S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyltransferase complement(5042625..5043830) Rhodopseudomonas palustris BisA53 4362206 YP_783406.1 CDS RPE_4506 NC_008435.1 5043971 5044675 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_1275 putative methyltransferase; type 12 methyltransferase 5043971..5044675 Rhodopseudomonas palustris BisA53 4362207 YP_783407.1 CDS RPE_4507 NC_008435.1 5044672 5044995 D PFAM: small multidrug resistance protein; KEGG: rpc:RPC_1276 small multidrug resistance protein; small multidrug resistance protein 5044672..5044995 Rhodopseudomonas palustris BisA53 4362208 YP_783408.1 CDS RPE_4508 NC_008435.1 5045017 5046060 R PFAM: Mg2+ transporter protein, CorA family protein; KEGG: rpc:RPC_1278 Mg2+ transporter protein, CorA-like; Mg2+ transporter protein, CorA family protein complement(5045017..5046060) Rhodopseudomonas palustris BisA53 4362209 YP_783409.1 CDS RPE_4509 NC_008435.1 5046220 5046822 R PFAM: NUDIX hydrolase; KEGG: rpc:RPC_4436 NUDIX hydrolase; NUDIX hydrolase complement(5046220..5046822) Rhodopseudomonas palustris BisA53 4362210 YP_783410.1 CDS RPE_4510 NC_008435.1 5046976 5048217 D KEGG: rpc:RPC_4438 hypothetical protein; hypothetical protein 5046976..5048217 Rhodopseudomonas palustris BisA53 4362211 YP_783411.1 CDS RPE_4511 NC_008435.1 5048563 5049162 D KEGG: rpc:RPC_4441 hypothetical protein; hypothetical protein 5048563..5049162 Rhodopseudomonas palustris BisA53 4362212 YP_783412.1 CDS RPE_4512 NC_008435.1 5049197 5049403 R TIGRFAM: Molybdenum-pterin binding; PFAM: TOBE domain protein; KEGG: rpc:RPC_4442 molybdenum-pterin binding domain; molybdenum-pterin binding complement(5049197..5049403) Rhodopseudomonas palustris BisA53 4362213 YP_783413.1 CDS RPE_4513 NC_008435.1 5049647 5050201 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rpc:RPC_4443 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 5049647..5050201 Rhodopseudomonas palustris BisA53 4362214 YP_783414.1 CDS RPE_4514 NC_008435.1 5050207 5050752 D TIGRFAM: alkylhydroperoxidase, AhpD family; alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rpc:RPC_4444 alkylhydroperoxidase, AhpD family; alkylhydroperoxidase 5050207..5050752 Rhodopseudomonas palustris BisA53 4362215 YP_783415.1 CDS RPE_4515 NC_008435.1 5050978 5051274 R KEGG: rpc:RPC_4445 ferredoxin like protein, FixX; ferredoxin like protein, fixX complement(5050978..5051274) Rhodopseudomonas palustris BisA53 4362216 YP_783416.1 CDS RPE_4516 NC_008435.1 5051332 5052639 R PFAM: monooxygenase, FAD-binding; HI0933 family protein; FAD dependent oxidoreductase; KEGG: rpc:RPC_4446 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase complement(5051332..5052639) Rhodopseudomonas palustris BisA53 4362217 YP_783417.1 CDS RPE_4517 NC_008435.1 5052651 5053757 R PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: rpc:RPC_4447 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta complement(5052651..5053757) Rhodopseudomonas palustris BisA53 4362218 YP_783418.1 CDS RPE_4518 NC_008435.1 5053785 5054630 R PFAM: electron transfer flavoprotein beta-subunit; KEGG: rpc:RPC_4448 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta complement(5053785..5054630) Rhodopseudomonas palustris BisA53 4362219 YP_783419.1 CDS nifW NC_008435.1 5054961 5055299 R associates with NifD and may protect the nitrogenase Fe-Mo protein from oxidative damage; nitrogenase stabilizing/protective protein complement(5054961..5055299) Rhodopseudomonas palustris BisA53 4362220 YP_783420.1 CDS RPE_4520 NC_008435.1 5055336 5056496 R TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: rpc:RPC_4450 pyruvate carboxyltransferase; homocitrate synthase complement(5055336..5056496) Rhodopseudomonas palustris BisA53 4362221 YP_783421.1 CDS RPE_4521 NC_008435.1 5056489 5057703 R PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: rpc:RPC_4451 aminotransferase, class V; class V aminotransferase complement(5056489..5057703) Rhodopseudomonas palustris BisA53 4362222 YP_783422.1 CDS RPE_4522 NC_008435.1 5057700 5058719 R PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rpc:RPC_4452 nitrogen-fixing NifU-like; NifU domain-containing protein complement(5057700..5058719) Rhodopseudomonas palustris BisA53 4362223 YP_783423.1 CDS RPE_4523 NC_008435.1 5058739 5059059 R TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rpa:RPA4610 protein of unknown function, HesB/YadR/YfhF; hypothetical protein complement(5058739..5059059) Rhodopseudomonas palustris BisA53 4362224 YP_783424.1 CDS RPE_4524 NC_008435.1 5059215 5059916 R PFAM: NifQ family protein; KEGG: rpc:RPC_4454 NifQ; nitrogen fixation protein NifQ complement(5059215..5059916) Rhodopseudomonas palustris BisA53 4362225 YP_783425.1 CDS RPE_4525 NC_008435.1 5059941 5060252 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rpa:RPA4612 ferredoxin 2[4Fe-4S] III, FdxB; 4Fe-4S ferredoxin complement(5059941..5060252) Rhodopseudomonas palustris BisA53 4362226 YP_783426.1 CDS RPE_4526 NC_008435.1 5060311 5060514 R PFAM: protein of unknown function DUF683; KEGG: rpc:RPC_4456 protein of unknown function DUF683; hypothetical protein complement(5060311..5060514) Rhodopseudomonas palustris BisA53 4362227 YP_783427.1 CDS RPE_4527 NC_008435.1 5060535 5061002 R PFAM: protein of unknown function DUF269; KEGG: rpc:RPC_4457 protein of unknown function DUF269; hypothetical protein complement(5060535..5061002) Rhodopseudomonas palustris BisA53 4362228 YP_783428.1 CDS RPE_4528 NC_008435.1 5061004 5061405 R TIGRFAM: nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: rpc:RPC_4458 dinitrogenase iron-molybdenum cofactor biosynthesis; dinitrogenase iron-molybdenum cofactor biosynthesis complement(5061004..5061405) Rhodopseudomonas palustris BisA53 4362229 YP_783429.1 CDS RPE_4529 NC_008435.1 5061452 5062825 R functions with NifE to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; nitrogenase molybdenum-cofactor biosynthesis protein NifN complement(5061452..5062825) Rhodopseudomonas palustris BisA53 4362230 YP_783430.1 CDS RPE_4530 NC_008435.1 5062836 5064500 R functions with NifN to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; nitrogenase molybdenum-cofactor biosynthesis protein NifE complement(5062836..5064500) Rhodopseudomonas palustris BisA53 4362231 YP_783431.1 CDS RPE_4531 NC_008435.1 5064533 5066089 R KEGG: rpc:RPC_4461 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase, component 1; nitrogenase molybdenum-iron protein subunit beta complement(5064533..5066089) Rhodopseudomonas palustris BisA53 4362232 YP_783432.1 CDS RPE_4532 NC_008435.1 5066163 5067626 R KEGG: rpc:RPC_4462 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase, component 1; nitrogenase molybdenum-iron protein subunit alpha complement(5066163..5067626) Rhodopseudomonas palustris BisA53 4362233 YP_783433.1 CDS nifH NC_008435.1 5067706 5068605 R nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis; nitrogenase reductase complement(5067706..5068605) Rhodopseudomonas palustris BisA53 4362234 YP_783434.1 CDS RPE_4534 NC_008435.1 5069146 5070048 R KEGG: rpc:RPC_4464 hypothetical protein; hypothetical protein complement(5069146..5070048) Rhodopseudomonas palustris BisA53 4362235 YP_783435.1 CDS RPE_4535 NC_008435.1 5070141 5070344 R PFAM: NifT/FixU family protein; KEGG: rpc:RPC_4466 NifT/FixU; NifT/FixU family protein complement(5070141..5070344) Rhodopseudomonas palustris BisA53 4362236 YP_783436.1 CDS RPE_4536 NC_008435.1 5070377 5070607 R PFAM: NifZ family protein; KEGG: rpc:RPC_4467 NifZ; NifZ family protein complement(5070377..5070607) Rhodopseudomonas palustris BisA53 4362237 YP_783437.1 CDS RPE_4537 NC_008435.1 5070607 5070909 R PFAM: NifZ family protein; KEGG: rpd:RPD_1068 NifZ; nitrogen fixation protein NifZ complement(5070607..5070909) Rhodopseudomonas palustris BisA53 4362238 YP_783438.1 CDS RPE_4538 NC_008435.1 5070952 5071491 R PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: rpc:RPC_4469 tetratricopeptide TPR_2; hypothetical protein complement(5070952..5071491) Rhodopseudomonas palustris BisA53 4362239 YP_783439.1 CDS RPE_4539 NC_008435.1 5071494 5071847 R TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rpc:RPC_4470 HesB/YadR/YfhF; hypothetical protein complement(5071494..5071847) Rhodopseudomonas palustris BisA53 4362240 YP_783440.1 CDS RPE_4540 NC_008435.1 5071859 5072083 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rpc:RPC_4471 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin complement(5071859..5072083) Rhodopseudomonas palustris BisA53 4362241 YP_783441.1 CDS RPE_4541 NC_008435.1 5072093 5073649 R TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; Radical SAM domain protein; KEGG: rpc:RPC_4472 nitrogenase cofactor biosynthesis protein NifB; nitrogenase cofactor biosynthesis protein NifB complement(5072093..5073649) Rhodopseudomonas palustris BisA53 4362242 YP_783442.1 CDS RPE_4542 NC_008435.1 5074065 5074259 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rpc:RPC_4473 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin complement(5074065..5074259) Rhodopseudomonas palustris BisA53 4362243 YP_783443.1 CDS RPE_4543 NC_008435.1 5074487 5076217 R KEGG: rpc:RPC_4475 transcriptional regulator, NifA, fis family; TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; transcriptional regulator NifA complement(5074487..5076217) Rhodopseudomonas palustris BisA53 4362244 YP_783444.1 CDS RPE_4544 NC_008435.1 5076482 5077402 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpc:RPC_4476 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(5076482..5077402) Rhodopseudomonas palustris BisA53 4362245 YP_783445.1 CDS RPE_4545 NC_008435.1 5077703 5078494 D KEGG: rpc:RPC_4477 hypothetical protein; hypothetical protein 5077703..5078494 Rhodopseudomonas palustris BisA53 4362246 YP_783446.1 CDS RPE_4546 NC_008435.1 5078686 5080350 D PFAM: AMP-dependent synthetase and ligase; KEGG: bja:bll3856 probable medium-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 5078686..5080350 Rhodopseudomonas palustris BisA53 4362247 YP_783447.1 CDS RPE_4547 NC_008435.1 5080756 5080935 R PFAM: antenna complex, alpha/beta subunit; KEGG: rpc:RPC_1239 antenna complex, alpha/beta subunit; antenna complex subunit alpha/beta complement(5080756..5080935) Rhodopseudomonas palustris BisA53 4362248 YP_783448.1 CDS RPE_4548 NC_008435.1 5080958 5081101 R PFAM: antenna complex, alpha/beta subunit; KEGG: rpa:RPA2654 light harvesting protein B-800-850, beta chain A (antenna pigment protein, beta chain A) (LH II-A beta); antenna complex subunit alpha/beta complement(5080958..5081101) Rhodopseudomonas palustris BisA53 4362249 YP_783449.1 CDS RPE_4549 NC_008435.1 5081532 5083520 D PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase, HAMP region domain protein; KEGG: rpa:RPA1965 putative adenylate/guanylate cyclase; adenylate/guanylate cyclase 5081532..5083520 Rhodopseudomonas palustris BisA53 4362250 YP_783450.1 CDS RPE_4550 NC_008435.1 5083566 5084042 R KEGG: rpc:RPC_4526 hypothetical protein; hypothetical protein complement(5083566..5084042) Rhodopseudomonas palustris BisA53 4362251 YP_783451.1 CDS RPE_4551 NC_008435.1 5084172 5085635 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rpc:RPC_4525 major facilitator superfamily MFS_1; major facilitator transporter 5084172..5085635 Rhodopseudomonas palustris BisA53 4362252 YP_783452.1 CDS RPE_4552 NC_008435.1 5085641 5086438 D KEGG: rpc:RPC_4524 HAD-superfamily hydrolase subfamily IIB; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; HAD family hydrolase 5085641..5086438 Rhodopseudomonas palustris BisA53 4362253 YP_783453.1 CDS RPE_4553 NC_008435.1 5086659 5088176 D KEGG: rpc:RPC_4523 alpha,alpha-trehalose-phosphate synthase; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase, family 20; Alpha,alpha-trehalose-phosphate synthase 5086659..5088176 Rhodopseudomonas palustris BisA53 4362254 YP_783454.1 CDS RPE_4554 NC_008435.1 5089625 5101903 R TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: bur:Bcep18194_B1068 haemagglutinin-like; filamentous hemagglutinin outer membrane protein complement(5089625..5101903) Rhodopseudomonas palustris BisA53 4362256 YP_783455.1 CDS RPE_4555 NC_008435.1 5101982 5102983 R PFAM: FecR protein; KEGG: rpb:RPB_2206 putative FecR; putative FecR protein complement(5101982..5102983) Rhodopseudomonas palustris BisA53 4362257 YP_783456.1 CDS RPE_4556 NC_008435.1 5103114 5103629 R PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: rpb:RPB_2205 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 factor complement(5103114..5103629) Rhodopseudomonas palustris BisA53 4362258 YP_783457.1 CDS RPE_4557 NC_008435.1 5103626 5104363 R PFAM: Secretin/TonB, short N-terminal domain; KEGG: rpb:RPB_2211 hypothetical protein; secretin/TonB short N-terminal domain-containing protein complement(5103626..5104363) Rhodopseudomonas palustris BisA53 4362259 YP_783458.1 CDS RPE_4558 NC_008435.1 5104564 5105160 R KEGG: cch:Cag_0831 regulatory proteins, AsnC family; hypothetical protein complement(5104564..5105160) Rhodopseudomonas palustris BisA53 4362260 YP_783459.1 CDS RPE_4559 NC_008435.1 5105330 5105821 R PFAM: cytochrome B561; KEGG: rpb:RPB_2376 cytochrome b561; cytochrome B561 complement(5105330..5105821) Rhodopseudomonas palustris BisA53 4362261 YP_783460.1 CDS RPE_4560 NC_008435.1 5105888 5106343 R PFAM: Calcium-binding EF-hand-containing protein; KEGG: rpb:RPB_2375 calcium-binding EF-hand protein; calcium-binding EF-hand-containing protein complement(5105888..5106343) Rhodopseudomonas palustris BisA53 4362262 YP_783461.1 CDS RPE_4561 NC_008435.1 5106515 5107252 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpb:RPB_2374 two component transcriptional regulator, winged helix family; two component transcriptional regulator 5106515..5107252 Rhodopseudomonas palustris BisA53 4362263 YP_783462.1 CDS RPE_4562 NC_008435.1 5107249 5108616 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpb:RPB_2373 periplasmic sensor signal transduction histidine kinase; periplasmic sensor signal transduction histidine kinase 5107249..5108616 Rhodopseudomonas palustris BisA53 4362264 YP_783463.1 CDS RPE_4563 NC_008435.1 5108629 5109684 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: mlo:mll2462 hypothetical protein; hypothetical protein complement(5108629..5109684) Rhodopseudomonas palustris BisA53 4362265 YP_783464.1 CDS RPE_4564 NC_008435.1 5109741 5110028 D hypothetical protein 5109741..5110028 Rhodopseudomonas palustris BisA53 4362266 YP_783465.1 CDS RPE_4565 NC_008435.1 5110081 5110350 D KEGG: rpb:RPB_1336 hypothetical protein; hypothetical protein 5110081..5110350 Rhodopseudomonas palustris BisA53 4362267 YP_783466.1 CDS RPE_4566 NC_008435.1 5110901 5111176 R hypothetical protein complement(5110901..5111176) Rhodopseudomonas palustris BisA53 4362268 YP_783467.1 CDS RPE_4567 NC_008435.1 5111728 5113773 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_4527 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(5111728..5113773) Rhodopseudomonas palustris BisA53 4362269 YP_783468.1 CDS RPE_4568 NC_008435.1 5114086 5114556 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rpc:RPC_4528 (2Fe-2S)-binding; 2Fe-2S iron-sulfur cluster binding domain-containing protein 5114086..5114556 Rhodopseudomonas palustris BisA53 4362270 YP_783469.1 CDS RPE_4569 NC_008435.1 5114703 5117057 D PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rpc:RPC_4529 carbon-monoxide dehydrogenase; carbon-monoxide dehydrogenase 5114703..5117057 Rhodopseudomonas palustris BisA53 4362271 YP_783470.1 CDS RPE_4570 NC_008435.1 5117133 5117933 D PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: rpc:RPC_4530 carbon-monoxide dehydrogenase; carbon-monoxide dehydrogenase 5117133..5117933 Rhodopseudomonas palustris BisA53 4362272 YP_783471.1 CDS RPE_4571 NC_008435.1 5118288 5119388 R PFAM: chemotaxis sensory transducer; KEGG: bja:bll4376 hypothetical protein; methyl-accepting chemotaxis sensory transducer complement(5118288..5119388) Rhodopseudomonas palustris BisA53 4362273 YP_783472.1 CDS RPE_4572 NC_008435.1 5120081 5120509 D KEGG: rpc:RPC_4537 hypothetical protein; hypothetical protein 5120081..5120509 Rhodopseudomonas palustris BisA53 4362274 YP_783473.1 CDS RPE_4573 NC_008435.1 5120689 5121384 D PFAM: PepSY-associated TM helix domain protein; KEGG: nwi:Nwi_2813 PepSY-associated TM helix; PepSY-associated TM helix domain-containing protein 5120689..5121384 Rhodopseudomonas palustris BisA53 4362275 YP_783474.1 CDS RPE_4574 NC_008435.1 5121395 5121907 D KEGG: nha:Nham_3634 hypothetical protein; hypothetical protein 5121395..5121907 Rhodopseudomonas palustris BisA53 4362276 YP_783475.1 CDS RPE_4575 NC_008435.1 5121951 5122760 D KEGG: nha:Nham_3635 hypothetical protein; hypothetical protein 5121951..5122760 Rhodopseudomonas palustris BisA53 4362277 YP_783476.1 CDS RPE_4576 NC_008435.1 5122845 5123783 D PFAM: ApbE family lipoprotein; KEGG: nha:Nham_3636 ApbE-like lipoprotein; ApbE family lipoprotein 5122845..5123783 Rhodopseudomonas palustris BisA53 4362278 YP_783477.1 CDS RPE_4577 NC_008435.1 5123959 5124645 R PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: nha:Nham_3637 2OG-Fe(II) oxygenase; putative hydroxylase complement(5123959..5124645) Rhodopseudomonas palustris BisA53 4362279 YP_783478.1 CDS RPE_4578 NC_008435.1 5124870 5127017 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: nha:Nham_3638 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(5124870..5127017) Rhodopseudomonas palustris BisA53 4362280 YP_783479.1 CDS RPE_4579 NC_008435.1 5127738 5128646 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: rpc:RPC_4540 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 5127738..5128646 Rhodopseudomonas palustris BisA53 4362281 YP_783480.1 CDS RPE_4580 NC_008435.1 5128659 5129090 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpc:RPC_4541 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 5128659..5129090 Rhodopseudomonas palustris BisA53 4362282 YP_783481.1 CDS RPE_4581 NC_008435.1 5129087 5129884 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: rpc:RPC_4542 TonB-like; TonB family protein 5129087..5129884 Rhodopseudomonas palustris BisA53 4362283 YP_783482.1 CDS RPE_4582 NC_008435.1 5129976 5132417 D PFAM: SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: nha:Nham_3642 SecA DEAD-like; SecA DEAD domain-containing protein 5129976..5132417 Rhodopseudomonas palustris BisA53 4362284 YP_783483.1 CDS RPE_4583 NC_008435.1 5132486 5133130 D KEGG: rpc:RPC_4544 hypothetical protein; hypothetical protein 5132486..5133130 Rhodopseudomonas palustris BisA53 4362285 YP_783484.1 CDS RPE_4584 NC_008435.1 5133278 5134390 D PFAM: MscS Mechanosensitive ion channel; KEGG: bxe:Bxe_A2257 small-conductance mechanosensitive ion channel; mechanosensitive ion channel MscS 5133278..5134390 Rhodopseudomonas palustris BisA53 4362286 YP_783485.1 CDS RPE_4585 NC_008435.1 5134408 5135460 R KEGG: ana:alr0276 hypothetical protein; hypothetical protein complement(5134408..5135460) Rhodopseudomonas palustris BisA53 4362287 YP_783486.1 CDS RPE_4586 NC_008435.1 5135484 5137091 D PFAM: AMP-dependent synthetase and ligase; KEGG: rpd:RPD_3984 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 5135484..5137091 Rhodopseudomonas palustris BisA53 4362288 YP_783487.1 CDS RPE_4587 NC_008435.1 5137395 5138243 D KEGG: rpc:RPC_0963 hypothetical protein; hypothetical protein 5137395..5138243 Rhodopseudomonas palustris BisA53 4362289 YP_783488.1 CDS RPE_4588 NC_008435.1 5138366 5139700 R PFAM: transposase, IS4 family protein; KEGG: sth:STH2086 transposase; transposase, IS4 family protein complement(5138366..5139700) Rhodopseudomonas palustris BisA53 4362290 YP_783489.1 CDS RPE_4589 NC_008435.1 5139936 5141021 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(5139936..5141021) Rhodopseudomonas palustris BisA53 4362291 YP_783490.1 CDS RPE_4590 NC_008435.1 5141080 5141685 R PFAM: Phosphoglycerate mutase; KEGG: rpd:RPD_1313 phosphoglycerate mutase; phosphoglycerate mutase complement(5141080..5141685) Rhodopseudomonas palustris BisA53 4362292 YP_783491.1 CDS RPE_4591 NC_008435.1 5141889 5142707 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase complement(5141889..5142707) Rhodopseudomonas palustris BisA53 4362293 YP_783492.1 CDS RPE_4592 NC_008435.1 5143337 5144305 R PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: rpc:RPC_1138 chaperone DnaJ-like; chaperone DnaJ domain-containing protein complement(5143337..5144305) Rhodopseudomonas palustris BisA53 4362294 YP_783493.1 CDS RPE_4593 NC_008435.1 5144417 5144923 R KEGG: rpc:RPC_1137 hypothetical protein; hypothetical protein complement(5144417..5144923) Rhodopseudomonas palustris BisA53 4362295 YP_783494.1 CDS RPE_4594 NC_008435.1 5144939 5145580 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 5144939..5145580 Rhodopseudomonas palustris BisA53 4362296 YP_783495.1 CDS RPE_4595 NC_008435.1 5145577 5146353 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: rpa:RPA1195 short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR 5145577..5146353 Rhodopseudomonas palustris BisA53 4362297 YP_783496.1 CDS RPE_4596 NC_008435.1 5146499 5146843 R TIGRFAM: putative regulatory protein, FmdB family; KEGG: rpa:RPA1256 putative formamidase regulatory protein FmdB; FmdB family regulatory protein complement(5146499..5146843) Rhodopseudomonas palustris BisA53 4362298 YP_783497.1 CDS RPE_4597 NC_008435.1 5147076 5148305 R PFAM: Acetamidase/Formamidase; KEGG: rpd:RPD_3859 formamidase; formamidase complement(5147076..5148305) Rhodopseudomonas palustris BisA53 4362299 YP_783498.1 CDS RPE_4598 NC_008435.1 5148337 5149026 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_1256 ABC transporter related; ABC transporter-like protein complement(5148337..5149026) Rhodopseudomonas palustris BisA53 4362300 YP_783499.1 CDS RPE_4599 NC_008435.1 5149225 5149980 R PFAM: ABC transporter related; KEGG: rpd:RPD_3861 ABC transporter related; ABC transporter-like protein complement(5149225..5149980) Rhodopseudomonas palustris BisA53 4362301 YP_783500.1 CDS RPE_4600 NC_008435.1 5149991 5151145 R PFAM: inner-membrane translocator; KEGG: rpd:RPD_3862 inner-membrane translocator; inner-membrane translocator complement(5149991..5151145) Rhodopseudomonas palustris BisA53 4362302 YP_783501.1 CDS RPE_4601 NC_008435.1 5151162 5152088 R PFAM: inner-membrane translocator; KEGG: rpb:RPB_1253 inner-membrane translocator; inner-membrane translocator complement(5151162..5152088) Rhodopseudomonas palustris BisA53 4362303 YP_783502.1 CDS RPE_4602 NC_008435.1 5152263 5153525 R KEGG: rpd:RPD_3864 amide-UreA binding protein; amide-UreA binding protein complement(5152263..5153525) Rhodopseudomonas palustris BisA53 4362304 YP_783503.1 CDS RPE_4603 NC_008435.1 5153674 5157045 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpb:RPB_1251 multi-sensor hybrid histidine kinase; periplasmic sensor hybrid histidine kinase 5153674..5157045 Rhodopseudomonas palustris BisA53 4362305 YP_783504.1 CDS RPE_4604 NC_008435.1 5157035 5157964 D PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: rpd:RPD_3866 response regulator receiver; two component LuxR family transcriptional regulator 5157035..5157964 Rhodopseudomonas palustris BisA53 4362306 YP_783505.1 CDS RPE_4605 NC_008435.1 5158333 5159106 R KEGG: rpc:RPC_4598 hypothetical protein; hypothetical protein complement(5158333..5159106) Rhodopseudomonas palustris BisA53 4362307 YP_783506.1 CDS RPE_4606 NC_008435.1 5159103 5159459 R PFAM: protein of unknown function DUF1469; KEGG: rpc:RPC_4599 protein of unknown function DUF1469; hypothetical protein complement(5159103..5159459) Rhodopseudomonas palustris BisA53 4362308 YP_783507.1 CDS RPE_4607 NC_008435.1 5159464 5160078 R KEGG: rpc:RPC_4600 late embryogenesis abundant protein; hypothetical protein complement(5159464..5160078) Rhodopseudomonas palustris BisA53 4362309 YP_783508.1 CDS RPE_4608 NC_008435.1 5160091 5161329 R PFAM: Late embryogenesis abundant protein; KEGG: rpc:RPC_4601 hypothetical protein; late embryogenesis abundant protein complement(5160091..5161329) Rhodopseudomonas palustris BisA53 4362310 YP_783509.1 CDS RPE_4609 NC_008435.1 5161508 5163019 D PFAM: AMP-dependent synthetase and ligase; KEGG: rpb:RPB_1244 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 5161508..5163019 Rhodopseudomonas palustris BisA53 4362311 YP_783510.1 CDS RPE_4610 NC_008435.1 5163213 5163533 D hypothetical protein 5163213..5163533 Rhodopseudomonas palustris BisA53 4362312 YP_783511.1 CDS RPE_4611 NC_008435.1 5163526 5164281 R KEGG: nha:Nham_2537 transcriptional regulator-related protein; CRP/FNR family transcriptional regulator complement(5163526..5164281) Rhodopseudomonas palustris BisA53 4362313 YP_783512.1 CDS RPE_4612 NC_008435.1 5165373 5166656 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(5165373..5166656) Rhodopseudomonas palustris BisA53 4362314 YP_783513.1 CDS RPE_4613 NC_008435.1 5166829 5167323 D KEGG: rpc:RPC_4620 hypothetical protein; hypothetical protein 5166829..5167323 Rhodopseudomonas palustris BisA53 4362315 YP_783514.1 CDS RPE_4614 NC_008435.1 5167326 5167655 R KEGG: bja:bsl7504 hypothetical protein; hypothetical protein complement(5167326..5167655) Rhodopseudomonas palustris BisA53 4362316 YP_783515.1 CDS RPE_4615 NC_008435.1 5167637 5168194 R KEGG: rpb:RPB_1861 hypothetical protein; hypothetical protein complement(5167637..5168194) Rhodopseudomonas palustris BisA53 4362317 YP_783516.1 CDS RPE_4616 NC_008435.1 5168191 5169186 R KEGG: rpb:RPB_1860 alpha/beta hydrolase; alpha/beta hydrolase complement(5168191..5169186) Rhodopseudomonas palustris BisA53 4362318 YP_783517.1 CDS xseA NC_008435.1 5169323 5170963 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 5169323..5170963 Rhodopseudomonas palustris BisA53 4362319 YP_783518.1 CDS RPE_4618 NC_008435.1 5171281 5172249 R KEGG: rpc:RPC_4623 glucokinase; TIGRFAM: glucokinase; PFAM: Glucokinase; glucokinase complement(5171281..5172249) Rhodopseudomonas palustris BisA53 4362320 YP_783519.1 CDS RPE_4619 NC_008435.1 5172246 5173610 R PFAM: glycoside hydrolase, family 1; KEGG: bja:blr4657 beta-glucosidase; Beta-glucosidase complement(5172246..5173610) Rhodopseudomonas palustris BisA53 4362321 YP_783520.1 CDS RPE_4620 NC_008435.1 5173741 5175087 D KEGG: rpc:RPC_4624 hypothetical protein; agarase 5173741..5175087 Rhodopseudomonas palustris BisA53 4362322 YP_783521.1 CDS RPE_4621 NC_008435.1 5175084 5175275 R KEGG: rpc:RPC_4626 hypothetical protein; hypothetical protein complement(5175084..5175275) Rhodopseudomonas palustris BisA53 4362323 YP_783522.1 CDS RPE_4622 NC_008435.1 5175893 5177227 R PFAM: beta-lactamase; KEGG: rpd:RPD_0869 6-aminohexanoate-dimer hydrolase; 6-aminohexanoate-dimer hydrolase complement(5175893..5177227) Rhodopseudomonas palustris BisA53 4362324 YP_783523.1 CDS RPE_4623 NC_008435.1 5177419 5177823 D PFAM: protein of unknown function DUF307; KEGG: rpc:RPC_4633 protein of unknown function DUF307; hypothetical protein 5177419..5177823 Rhodopseudomonas palustris BisA53 4362325 YP_783524.1 CDS RPE_4624 NC_008435.1 5178276 5179979 D catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 5178276..5179979 Rhodopseudomonas palustris BisA53 4362326 YP_783525.1 CDS RPE_4625 NC_008435.1 5179997 5182072 D One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B 5179997..5182072 Rhodopseudomonas palustris BisA53 4362327 YP_783526.1 CDS RPE_4626 NC_008435.1 5182085 5182687 D one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C 5182085..5182687 Rhodopseudomonas palustris BisA53 4362328 YP_783527.1 CDS RPE_4627 NC_008435.1 5182704 5185394 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Osmosensitive K+ channel His kinase sensor; UspA domain protein; KEGG: rpb:RPB_4648 osmosensitive K+ channel signal transduction histidine kinase; osmosensitive K+ channel signal transduction histidine kinase 5182704..5185394 Rhodopseudomonas palustris BisA53 4362329 YP_783528.1 CDS RPE_4628 NC_008435.1 5185391 5186083 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpb:RPB_4649 two component transcriptional regulator, winged helix family; two component transcriptional regulator 5185391..5186083 Rhodopseudomonas palustris BisA53 4362330 YP_783529.1 CDS RPE_4629 NC_008435.1 5186252 5186956 D PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: bja:bll6060 putative catabolite gene activator; Crp/FNR family transcriptional regulator 5186252..5186956 Rhodopseudomonas palustris BisA53 4362331 YP_783530.1 CDS RPE_4630 NC_008435.1 5187670 5190693 D PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: bja:bll5043 hypothetical protein; adenylate/guanylate cyclase 5187670..5190693 Rhodopseudomonas palustris BisA53 4362332 YP_783531.1 CDS RPE_4631 NC_008435.1 5190690 5191970 D KEGG: bja:bll5042 hypothetical protein; hypothetical protein 5190690..5191970 Rhodopseudomonas palustris BisA53 4362333 YP_783532.1 CDS RPE_4632 NC_008435.1 5191984 5193768 D KEGG: bja:bll5041 hypothetical protein; hypothetical protein 5191984..5193768 Rhodopseudomonas palustris BisA53 4362334 YP_783533.1 CDS RPE_4633 NC_008435.1 5193765 5195225 D KEGG: bja:bll5040 putative iron-dependent peroxidase; putative iron-dependent peroxidase 5193765..5195225 Rhodopseudomonas palustris BisA53 4362335 YP_783534.1 CDS RPE_4634 NC_008435.1 5195236 5195907 R PFAM: Hly-III family protein; KEGG: rpa:RPA1585 putative hemmolysin III, HlyIII family; Hly-III family protein complement(5195236..5195907) Rhodopseudomonas palustris BisA53 4362336 YP_783535.1 CDS RPE_4635 NC_008435.1 5196239 5196727 R catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide; cyanate hydratase complement(5196239..5196727) Rhodopseudomonas palustris BisA53 4362337 YP_783536.1 CDS RPE_4636 NC_008435.1 5196805 5197725 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_2056 ABC transporter related; ABC transporter-like protein complement(5196805..5197725) Rhodopseudomonas palustris BisA53 4362338 YP_783537.1 CDS RPE_4637 NC_008435.1 5197731 5198570 R TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_2055 nitrate transport permease; nitrate ABC transporter inner membrane subunit complement(5197731..5198570) Rhodopseudomonas palustris BisA53 4362339 YP_783538.1 CDS RPE_4638 NC_008435.1 5198731 5200119 R TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpb:RPB_2054 twin-arginine translocation pathway signal; ABC-type nitrate transport system periplasmic component complement(5198731..5200119) Rhodopseudomonas palustris BisA53 4362340 YP_783539.1 CDS RPE_4639 NC_008435.1 5200275 5202212 D KEGG: rpb:RPB_2053 transcriptional regulator, fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; AAA ATPase; Fis family transcriptional regulator 5200275..5202212 Rhodopseudomonas palustris BisA53 4362341 YP_783540.1 CDS RPE_4640 NC_008435.1 5202546 5206085 R KEGG: sil:SPOA0203 hypothetical protein; hypothetical protein complement(5202546..5206085) Rhodopseudomonas palustris BisA53 4362343 YP_783541.1 CDS RPE_4641 NC_008435.1 5206082 5208013 R hypothetical protein complement(5206082..5208013) Rhodopseudomonas palustris BisA53 4362344 YP_783542.1 CDS RPE_4642 NC_008435.1 5208020 5210830 R PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: sil:SPOA0205 serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin complement(5208020..5210830) Rhodopseudomonas palustris BisA53 4362345 YP_783543.1 CDS RPE_4643 NC_008435.1 5211291 5214179 D PFAM: peptidase S1 and S6, chymotrypsin/Hap; phospholipase D/Transphosphatidylase; KEGG: rpc:RPC_3413 hypothetical protein; phospholipase D/transphosphatidylase 5211291..5214179 Rhodopseudomonas palustris BisA53 4362346 YP_783544.1 CDS RPE_4644 NC_008435.1 5214605 5216260 R PFAM: major facilitator superfamily MFS_1; KEGG: rpa:RPA0737 putative oxalate/formate major facilitator superfamily (MFS) antiporter; major facilitator transporter complement(5214605..5216260) Rhodopseudomonas palustris BisA53 4362347 YP_783545.1 CDS RPE_4645 NC_008435.1 5216318 5216536 R KEGG: rpd:RPD_0621 putative NAD-dependent formate dehydrogenase delta subunit; putative NAD-dependent formate dehydrogenase subunit delta complement(5216318..5216536) Rhodopseudomonas palustris BisA53 4362348 YP_783546.1 CDS RPE_4646 NC_008435.1 5216526 5217344 R involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein complement(5216526..5217344) Rhodopseudomonas palustris BisA53 4362349 YP_783547.1 CDS RPE_4647 NC_008435.1 5217349 5220195 R TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rpc:RPC_4645 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha complement(5217349..5220195) Rhodopseudomonas palustris BisA53 4362350 YP_783548.1 CDS RPE_4648 NC_008435.1 5220208 5221764 R PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: rpc:RPC_4646 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) complement(5220208..5221764) Rhodopseudomonas palustris BisA53 4362351 YP_783549.1 CDS RPE_4649 NC_008435.1 5221761 5222243 R catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor; formate dehydrogenase subunit gamma complement(5221761..5222243) Rhodopseudomonas palustris BisA53 4362352 YP_783550.1 CDS RPE_4650 NC_008435.1 5222365 5223255 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_4648 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(5222365..5223255) Rhodopseudomonas palustris BisA53 4362353 YP_783551.1 CDS RPE_4651 NC_008435.1 5223523 5226744 R PFAM: acriflavin resistance protein; KEGG: rpb:RPB_4300 acriflavin resistance protein; acriflavin resistance protein complement(5223523..5226744) Rhodopseudomonas palustris BisA53 4362354 YP_783552.1 CDS RPE_4652 NC_008435.1 5226741 5228111 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: bja:bll5772 hypothetical protein; RND family efflux transporter MFP subunit complement(5226741..5228111) Rhodopseudomonas palustris BisA53 4362355 YP_783553.1 CDS RPE_4653 NC_008435.1 5228142 5228345 D KEGG: rpd:RPD_4202 hypothetical protein; hypothetical protein 5228142..5228345 Rhodopseudomonas palustris BisA53 4362356 YP_783554.1 CDS RPE_4654 NC_008435.1 5228510 5229502 R PFAM: CHAD domain containing protein; KEGG: rpc:RPC_4651 CHAD; CHAD domain-containing protein complement(5228510..5229502) Rhodopseudomonas palustris BisA53 4362357 YP_783555.1 CDS RPE_4655 NC_008435.1 5229752 5231083 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_4653 periplasmic sensor signal transduction histidine kinase; sensor signal transduction histidine kinase complement(5229752..5231083) Rhodopseudomonas palustris BisA53 4362358 YP_783556.1 CDS RPE_4656 NC_008435.1 5231080 5231856 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_4654 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(5231080..5231856) Rhodopseudomonas palustris BisA53 4362359 YP_783557.1 CDS RPE_4657 NC_008435.1 5232030 5232671 R PFAM: cytochrome B561; KEGG: rpc:RPC_4656 cytochrome b561; cytochrome B561 complement(5232030..5232671) Rhodopseudomonas palustris BisA53 4362360 YP_783558.1 CDS RPE_4658 NC_008435.1 5232768 5235914 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rpc:RPC_4657 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein complement(5232768..5235914) Rhodopseudomonas palustris BisA53 4362361 YP_783559.1 CDS RPE_4659 NC_008435.1 5235911 5237326 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rpc:RPC_4658 secretion protein HlyD; RND family efflux transporter MFP subunit complement(5235911..5237326) Rhodopseudomonas palustris BisA53 4362362 YP_783560.1 CDS RPE_4660 NC_008435.1 5237323 5237724 R KEGG: rpc:RPC_4659 hypothetical protein; hypothetical protein complement(5237323..5237724) Rhodopseudomonas palustris BisA53 4362363 YP_783561.1 CDS RPE_4661 NC_008435.1 5237810 5238370 R KEGG: rpb:RPB_1100 hypothetical protein; hypothetical protein complement(5237810..5238370) Rhodopseudomonas palustris BisA53 4362364 YP_783562.1 CDS RPE_4662 NC_008435.1 5238416 5239741 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_4661 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(5238416..5239741) Rhodopseudomonas palustris BisA53 4362365 YP_783563.1 CDS RPE_4663 NC_008435.1 5239716 5240237 R KEGG: rpc:RPC_4662 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; putative PAS/PAC sensor protein complement(5239716..5240237) Rhodopseudomonas palustris BisA53 4362366 YP_783564.1 CDS RPE_4664 NC_008435.1 5240443 5241561 R PFAM: ABC-2 type transporter; KEGG: rpc:RPC_4663 ABC-2; ABC-2 type transporter complement(5240443..5241561) Rhodopseudomonas palustris BisA53 4362367 YP_783565.1 CDS RPE_4665 NC_008435.1 5241558 5244332 R PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: rpc:RPC_4664 ABC transporter related; ABC transporter-like protein complement(5241558..5244332) Rhodopseudomonas palustris BisA53 4362368 YP_783566.1 CDS RPE_4666 NC_008435.1 5244371 5245441 R PFAM: secretion protein HlyD family protein; KEGG: rpc:RPC_4665 secretion protein HlyD; secretion protein HlyD family protein complement(5244371..5245441) Rhodopseudomonas palustris BisA53 4362369 YP_783567.1 CDS RPE_4667 NC_008435.1 5245620 5246207 D PFAM: regulatory protein, TetR; KEGG: rpc:RPC_4666 transcriptional regulator, TetR family; TetR family transcriptional regulator 5245620..5246207 Rhodopseudomonas palustris BisA53 4362370 YP_783568.1 CDS RPE_4668 NC_008435.1 5246227 5247957 R KEGG: rpc:RPC_4667 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(5246227..5247957) Rhodopseudomonas palustris BisA53 4362371 YP_783569.1 CDS RPE_4669 NC_008435.1 5247963 5249054 R PFAM: CheB methylesterase; response regulator receiver; KEGG: rpc:RPC_4668 response regulator receiver (CheY-like) modulated CheB methylesterase; response regulator receiver modulated CheB methylesterase complement(5247963..5249054) Rhodopseudomonas palustris BisA53 4362372 YP_783570.1 CDS RPE_4670 NC_008435.1 5249072 5249923 R PFAM: MCP methyltransferase, CheR-type; KEGG: rpc:RPC_4669 MCP methyltransferase, CheR-type; chemotaxis protein CheR complement(5249072..5249923) Rhodopseudomonas palustris BisA53 4362373 YP_783571.1 CDS RPE_4671 NC_008435.1 5249928 5250410 R PFAM: CheW domain protein; KEGG: rpc:RPC_4670 CheW protein; CheW protein complement(5249928..5250410) Rhodopseudomonas palustris BisA53 4362374 YP_783572.1 CDS RPE_4672 NC_008435.1 5250471 5252543 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_4672 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(5250471..5252543) Rhodopseudomonas palustris BisA53 4362375 YP_783573.1 CDS RPE_4673 NC_008435.1 5252646 5254841 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_4674 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(5252646..5254841) Rhodopseudomonas palustris BisA53 4362376 YP_783574.1 CDS RPE_4674 NC_008435.1 5254889 5255374 R PFAM: CheW domain protein; KEGG: rpc:RPC_4675 CheW protein; CheW protein complement(5254889..5255374) Rhodopseudomonas palustris BisA53 4362377 YP_783575.1 CDS RPE_4675 NC_008435.1 5255374 5257419 R PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rpc:RPC_4676 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase complement(5255374..5257419) Rhodopseudomonas palustris BisA53 4362378 YP_783576.1 CDS RPE_4676 NC_008435.1 5257416 5257781 R PFAM: response regulator receiver; KEGG: rpc:RPC_4677 response regulator receiver domain protein (CheY-like); response regulator receiver protein complement(5257416..5257781) Rhodopseudomonas palustris BisA53 4362379 YP_783577.1 CDS RPE_4677 NC_008435.1 5257781 5258101 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rpc:RPC_4678 anti-sigma-factor antagonist (STAS) domain protein; anti-sigma-factor antagonist complement(5257781..5258101) Rhodopseudomonas palustris BisA53 4362380 YP_783578.1 CDS RPE_4678 NC_008435.1 5258975 5260084 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpa:RPA1955 glutathione dependent formaldehyde dehydrogenase; alcohol dehydrogenase 5258975..5260084 Rhodopseudomonas palustris BisA53 4362381 YP_783579.1 CDS RPE_4679 NC_008435.1 5260162 5260731 D catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione; glutathione-dependent formaldehyde-activating protein 5260162..5260731 Rhodopseudomonas palustris BisA53 4362382 YP_783580.1 CDS RPE_4680 NC_008435.1 5260964 5261809 D PFAM: putative esterase; KEGG: rpc:RPC_0099 carboxylesterase; carboxylesterase 5260964..5261809 Rhodopseudomonas palustris BisA53 4362383 YP_783581.1 CDS RPE_4681 NC_008435.1 5261816 5262346 R KEGG: bja:bll6187 hypothetical protein; hypothetical protein complement(5261816..5262346) Rhodopseudomonas palustris BisA53 4362384 YP_783582.1 CDS RPE_4682 NC_008435.1 5262483 5263664 D KEGG: bja:blr6188 hypothetical protein; hypothetical protein 5262483..5263664 Rhodopseudomonas palustris BisA53 4362385 YP_783583.1 CDS RPE_4683 NC_008435.1 5263675 5264643 D TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: bja:blr6189 hypothetical protein; YVTN beta-propeller repeat-containing protein 5263675..5264643 Rhodopseudomonas palustris BisA53 4362386 YP_783584.1 CDS RPE_4684 NC_008435.1 5264640 5265452 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_0248 ABC transporter related; ABC transporter-like protein 5264640..5265452 Rhodopseudomonas palustris BisA53 4362387 YP_783585.1 CDS RPE_4685 NC_008435.1 5265445 5266290 D PFAM: ABC-2 type transporter; KEGG: bja:blr6191 ABC transporter permease protein; ABC-2 type transporter 5265445..5266290 Rhodopseudomonas palustris BisA53 4362388 YP_783586.1 CDS RPE_4686 NC_008435.1 5266287 5266904 D KEGG: bja:blr6192 hypothetical protein; hypothetical protein 5266287..5266904 Rhodopseudomonas palustris BisA53 4362389 YP_783587.1 CDS RPE_4687 NC_008435.1 5267053 5267460 R KEGG: rpc:RPC_4729 hypothetical protein; hypothetical protein complement(5267053..5267460) Rhodopseudomonas palustris BisA53 4362390 YP_783588.1 CDS RPE_4689 NC_008435.1 5269244 5270983 D PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: rpc:RPC_4731 ABC transporter-like; ABC transporter 5269244..5270983 Rhodopseudomonas palustris BisA53 4362392 YP_783589.1 CDS RPE_4690 NC_008435.1 5271256 5272197 R TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_4732 hypothetical protein; hypothetical protein complement(5271256..5272197) Rhodopseudomonas palustris BisA53 4362393 YP_783590.1 CDS RPE_4691 NC_008435.1 5272694 5273320 R KEGG: rpc:RPC_4733 hypothetical protein; hypothetical protein complement(5272694..5273320) Rhodopseudomonas palustris BisA53 4362394 YP_783591.1 CDS RPE_4692 NC_008435.1 5273398 5274711 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: rpc:RPC_4734 protein of unknown function DUF224, cysteine-rich region; hypothetical protein complement(5273398..5274711) Rhodopseudomonas palustris BisA53 4362395 YP_783592.1 CDS RPE_4693 NC_008435.1 5274708 5275949 R PFAM: FAD linked oxidase domain protein; KEGG: rpc:RPC_4735 FAD linked oxidase-like; FAD linked oxidase domain-containing protein complement(5274708..5275949) Rhodopseudomonas palustris BisA53 4362396 YP_783593.1 CDS RPE_4694 NC_008435.1 5276209 5277702 R PFAM: FAD linked oxidase domain protein; KEGG: rpc:RPC_4736 FAD linked oxidase-like; FAD linked oxidase domain-containing protein complement(5276209..5277702) Rhodopseudomonas palustris BisA53 4362397 YP_783594.1 CDS RPE_4695 NC_008435.1 5277924 5278598 R PFAM: regulatory protein, TetR; KEGG: rpc:RPC_4737 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(5277924..5278598) Rhodopseudomonas palustris BisA53 4362398 YP_783595.1 CDS RPE_4696 NC_008435.1 5278770 5279087 R PFAM: branched-chain amino acid transport; KEGG: rpb:RPB_1825 branched-chain amino acid transport; branched-chain amino acid transport complement(5278770..5279087) Rhodopseudomonas palustris BisA53 4362399 YP_783596.1 CDS RPE_4697 NC_008435.1 5279084 5279827 R PFAM: AzlC family protein; KEGG: rpb:RPB_1824 AzlC-like; AzlC-like protein complement(5279084..5279827) Rhodopseudomonas palustris BisA53 4362400 YP_783597.1 CDS RPE_4698 NC_008435.1 5279856 5280146 D hypothetical protein 5279856..5280146 Rhodopseudomonas palustris BisA53 4362401 YP_783598.1 CDS RPE_4699 NC_008435.1 5280163 5282079 R KEGG: rpb:RPB_1818 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH complement(5280163..5282079) Rhodopseudomonas palustris BisA53 4362402 YP_783599.1 CDS RPE_4700 NC_008435.1 5282291 5283322 R TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: ExsB family protein; PP-loop domain protein; KEGG: rpc:RPC_4744 tRNA(Ile)-lysidine synthetase-like; tRNA(Ile)-lysidine synthetase-like protein complement(5282291..5283322) Rhodopseudomonas palustris BisA53 4362403 YP_783600.1 CDS RPE_4701 NC_008435.1 5283483 5284493 R PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: rpc:RPC_4747 hypothetical protein; TPR repeat-containing protein complement(5283483..5284493) Rhodopseudomonas palustris BisA53 4362404 YP_783601.1 CDS RPE_4702 NC_008435.1 5284636 5285133 R PFAM: OmpA/MotB domain protein; KEGG: rpc:RPC_4748 OmpA/MotB; OmpA/MotB domain-containing protein complement(5284636..5285133) Rhodopseudomonas palustris BisA53 4362405 YP_783602.1 CDS RPE_4703 NC_008435.1 5285459 5286295 R PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: rpc:RPC_0740 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(5285459..5286295) Rhodopseudomonas palustris BisA53 4362406 YP_783603.1 CDS RPE_4704 NC_008435.1 5286417 5287112 D PFAM: O-methyltransferase, family 3; KEGG: rpc:RPC_0739 O-methyltransferase, family 3; O-methyltransferase family protein 5286417..5287112 Rhodopseudomonas palustris BisA53 4362407 YP_783604.1 CDS RPE_4705 NC_008435.1 5287202 5287996 R KEGG: rpc:RPC_4749 hypothetical protein; hypothetical protein complement(5287202..5287996) Rhodopseudomonas palustris BisA53 4362408 YP_783605.1 CDS RPE_4706 NC_008435.1 5288139 5290481 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rpc:RPC_4750 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains); diguanylate cyclase/phosphodiesterase complement(5288139..5290481) Rhodopseudomonas palustris BisA53 4362409 YP_783606.1 CDS tolB NC_008435.1 5290685 5292037 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(5290685..5292037) Rhodopseudomonas palustris BisA53 4362410 YP_783607.1 CDS RPE_4708 NC_008435.1 5292067 5293011 R KEGG: rpc:RPC_4752 putative TolA; putative TolA protein complement(5292067..5293011) Rhodopseudomonas palustris BisA53 4362411 YP_783608.1 CDS RPE_4709 NC_008435.1 5293019 5293471 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpc:RPC_4753 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(5293019..5293471) Rhodopseudomonas palustris BisA53 4362412 YP_783609.1 CDS RPE_4710 NC_008435.1 5293524 5294207 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: rpc:RPC_4754 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(5293524..5294207) Rhodopseudomonas palustris BisA53 4362413 YP_783610.1 CDS RPE_4711 NC_008435.1 5294665 5295066 D KEGG: bja:bll2420 hypothetical protein; hypothetical protein 5294665..5295066 Rhodopseudomonas palustris BisA53 4362414 YP_783611.1 CDS RPE_4712 NC_008435.1 5295128 5295604 R KEGG: rpc:RPC_4757 hypothetical protein; hypothetical protein complement(5295128..5295604) Rhodopseudomonas palustris BisA53 4362415 YP_783612.1 CDS RPE_4713 NC_008435.1 5295753 5296460 R PFAM: regulatory protein, TetR; KEGG: rpc:RPC_4758 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(5295753..5296460) Rhodopseudomonas palustris BisA53 4362416 YP_783613.1 CDS RPE_4714 NC_008435.1 5296615 5297025 R PFAM: DGPFAETKE family protein; KEGG: rpb:RPB_1804 DGPF protein; DGPFAETKE family protein complement(5296615..5297025) Rhodopseudomonas palustris BisA53 4362417 YP_783614.1 CDS RPE_4715 NC_008435.1 5297102 5297473 R KEGG: bja:bll7164 hypothetical protein; hypothetical protein complement(5297102..5297473) Rhodopseudomonas palustris BisA53 4362418 YP_783615.1 CDS RPE_4716 NC_008435.1 5298077 5298865 D PFAM: short-chain dehydrogenase/reductase SDR; Insect alcohol dehydrogenase family; KEGG: rpd:RPD_4158 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 5298077..5298865 Rhodopseudomonas palustris BisA53 4362419 YP_783616.1 CDS RPE_4717 NC_008435.1 5298878 5299207 R TIGRFAM: prevent-host-death family protein; KEGG: rpb:RPB_0354 prevent-host-death protein; prevent-host-death family protein complement(5298878..5299207) Rhodopseudomonas palustris BisA53 4362420 YP_783617.1 CDS RPE_4718 NC_008435.1 5299536 5299847 D hypothetical protein 5299536..5299847 Rhodopseudomonas palustris BisA53 4362421 YP_783618.1 CDS RPE_4719 NC_008435.1 5299887 5300675 R PFAM: inositol monophosphatase; KEGG: rpc:RPC_4776 inositol-1(or 4)-monophosphatase; inositol-1(or 4)-monophosphatase complement(5299887..5300675) Rhodopseudomonas palustris BisA53 4362422 YP_783619.1 CDS RPE_4720 NC_008435.1 5300813 5301973 R KEGG: rpc:RPC_4775 Sel1-like; Sel1-like protein complement(5300813..5301973) Rhodopseudomonas palustris BisA53 4362423 YP_783620.1 CDS RPE_4721 NC_008435.1 5301970 5302659 R PFAM: thiamine monophosphate synthase; KEGG: rpc:RPC_4774 thiamine monophosphate synthase; thiamine monophosphate synthase complement(5301970..5302659) Rhodopseudomonas palustris BisA53 4362424 YP_783621.1 CDS RPE_4722 NC_008435.1 5302666 5303721 R PFAM: fructose-bisphosphate aldolase, class-I; KEGG: rpb:RPB_4471 fructose-bisphosphate aldolase; fructose-bisphosphate aldolase complement(5302666..5303721) Rhodopseudomonas palustris BisA53 4362425 YP_783622.1 CDS RPE_4723 NC_008435.1 5303794 5304117 R PFAM: PemK family protein; KEGG: rpa:RPA0941 hypothetical protein; transcriptional modulator of MazE/toxin MazF complement(5303794..5304117) Rhodopseudomonas palustris BisA53 4362426 YP_783623.1 CDS RPE_4724 NC_008435.1 5304114 5304371 R KEGG: rpa:RPA0942 hypothetical protein; hypothetical protein complement(5304114..5304371) Rhodopseudomonas palustris BisA53 4362427 YP_783624.1 CDS pgk NC_008435.1 5304449 5305645 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(5304449..5305645) Rhodopseudomonas palustris BisA53 4362428 YP_783625.1 CDS RPE_4726 NC_008435.1 5305642 5305956 R KEGG: rpc:RPC_4769 hypothetical protein; hypothetical protein complement(5305642..5305956) Rhodopseudomonas palustris BisA53 4362429 YP_783626.1 CDS RPE_4727 NC_008435.1 5306032 5306301 R hypothetical protein complement(5306032..5306301) Rhodopseudomonas palustris BisA53 4362430 YP_783627.1 CDS RPE_4728 NC_008435.1 5306343 5307350 R KEGG: rpc:RPC_4767 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I complement(5306343..5307350) Rhodopseudomonas palustris BisA53 4362431 YP_783628.1 CDS RPE_4729 NC_008435.1 5307478 5309469 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(5307478..5309469) Rhodopseudomonas palustris BisA53 4362432 YP_783629.1 CDS RPE_4730 NC_008435.1 5309706 5310077 D KEGG: rpc:RPC_4765 hypothetical protein; hypothetical protein 5309706..5310077 Rhodopseudomonas palustris BisA53 4362433 YP_783630.1 CDS RPE_4731 NC_008435.1 5310074 5310457 D PFAM: protein of unknown function DUF710; KEGG: rpc:RPC_4764 protein of unknown function DUF710; hypothetical protein 5310074..5310457 Rhodopseudomonas palustris BisA53 4362434 YP_783631.1 CDS RPE_4732 NC_008435.1 5310661 5311737 R KEGG: nha:Nham_2660 hypothetical protein; hypothetical protein complement(5310661..5311737) Rhodopseudomonas palustris BisA53 4362435 YP_783632.1 CDS RPE_4733 NC_008435.1 5311774 5315445 R KEGG: bja:bll6496 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(5311774..5315445) Rhodopseudomonas palustris BisA53 4362436 YP_783633.1 CDS RPE_4734 NC_008435.1 5315737 5316108 D PFAM: DGPFAETKE family protein; KEGG: rpd:RPD_4161 hypothetical protein; DGPFAETKE family protein 5315737..5316108 Rhodopseudomonas palustris BisA53 4362437 YP_783634.1 CDS RPE_4735 NC_008435.1 5316133 5317434 D PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: rpd:RPD_4160 sigma-70 region 2; RNA polymerase ECF-subfamily sigma factor 5316133..5317434 Rhodopseudomonas palustris BisA53 4362438 YP_783635.1 CDS RPE_4736 NC_008435.1 5317493 5317894 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: rpc:RPC_4762 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 5317493..5317894 Rhodopseudomonas palustris BisA53 4362439 YP_783636.1 CDS RPE_4737 NC_008435.1 5318138 5319355 D TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rpc:RPC_4760 drug resistance transporter Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 5318138..5319355 Rhodopseudomonas palustris BisA53 4362440 YP_783637.1 CDS RPE_4738 NC_008435.1 5319377 5319808 R KEGG: rpc:RPC_4777 hypothetical protein; hypothetical protein complement(5319377..5319808) Rhodopseudomonas palustris BisA53 4362441 YP_783638.1 CDS RPE_4739 NC_008435.1 5319832 5320752 R PFAM: peptidase U32; KEGG: rpc:RPC_4778 peptidase U32; peptidase U32 complement(5319832..5320752) Rhodopseudomonas palustris BisA53 4362442 YP_783639.1 CDS RPE_4740 NC_008435.1 5320843 5321820 R PFAM: peptidase U32; KEGG: rpc:RPC_4779 peptidase U32; peptidase U32 complement(5320843..5321820) Rhodopseudomonas palustris BisA53 4362443 YP_783640.1 CDS RPE_4741 NC_008435.1 5321824 5322366 R KEGG: rpc:RPC_4780 hypothetical protein; hypothetical protein complement(5321824..5322366) Rhodopseudomonas palustris BisA53 4362444 YP_783641.1 CDS RPE_4742 NC_008435.1 5322477 5324000 D TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: rpc:RPC_4781 carboxylyase-related protein; UbiD family decarboxylase 5322477..5324000 Rhodopseudomonas palustris BisA53 4362445 YP_783642.1 CDS RPE_4743 NC_008435.1 5323997 5324599 D TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: rpc:RPC_4782 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 5323997..5324599 Rhodopseudomonas palustris BisA53 4362446 YP_783643.1 CDS RPE_4744 NC_008435.1 5324618 5325220 R KEGG: rpd:RPD_4330 hypothetical protein; hypothetical protein complement(5324618..5325220) Rhodopseudomonas palustris BisA53 4362447 YP_783644.1 CDS RPE_4745 NC_008435.1 5325296 5325856 D KEGG: rpd:RPD_4331 hypothetical protein; hypothetical protein 5325296..5325856 Rhodopseudomonas palustris BisA53 4362448 YP_783645.1 CDS RPE_4746 NC_008435.1 5325859 5326065 D SMART: helix-turn-helix domain protein; KEGG: rpd:RPD_4332 helix-turn-helix type 3; XRE family transcriptional regulator 5325859..5326065 Rhodopseudomonas palustris BisA53 4362449 YP_783646.1 CDS RPE_4747 NC_008435.1 5326268 5327689 R PFAM: peptidase U62, modulator of DNA gyrase; KEGG: rpc:RPC_4785 peptidase U62, modulator of DNA gyrase; C69 family peptidase complement(5326268..5327689) Rhodopseudomonas palustris BisA53 4362450 YP_783647.1 CDS RPE_4748 NC_008435.1 5327810 5328034 D PFAM: protein of unknown function DUF433; KEGG: rpa:RPA0826 DUF433; hypothetical protein 5327810..5328034 Rhodopseudomonas palustris BisA53 4362451 YP_783648.1 CDS RPE_4749 NC_008435.1 5328209 5329549 R KEGG: rpb:RPB_1020 hypothetical protein; hypothetical protein complement(5328209..5329549) Rhodopseudomonas palustris BisA53 4362452 YP_783649.1 CDS RPE_4750 NC_008435.1 5329683 5330255 R PFAM: Invasion associated locus B family protein; KEGG: rpd:RPD_0813 invasion associated locus B; invasion associated locus B family protein complement(5329683..5330255) Rhodopseudomonas palustris BisA53 4362453 YP_783650.1 CDS RPE_4751 NC_008435.1 5330635 5331486 D PFAM: cytochrome c oxidase, subunit II; cytochrome C oxidase subunit II, transmembrane region; KEGG: rpc:RPC_4787 cytochrome-c oxidase; cytochrome-c oxidase 5330635..5331486 Rhodopseudomonas palustris BisA53 4362454 YP_783651.1 CDS RPE_4752 NC_008435.1 5331554 5333194 D PFAM: cytochrome c oxidase, subunit I; KEGG: rpc:RPC_4788 cytochrome-c oxidase; cytochrome-c oxidase 5331554..5333194 Rhodopseudomonas palustris BisA53 4362455 YP_783652.1 CDS RPE_4753 NC_008435.1 5333275 5334216 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 5333275..5334216 Rhodopseudomonas palustris BisA53 4362456 YP_783653.1 CDS RPE_4754 NC_008435.1 5334228 5334401 D KEGG: rpc:RPC_4790 CoxF protein; putative CoxF 5334228..5334401 Rhodopseudomonas palustris BisA53 4362457 YP_783654.1 CDS RPE_4755 NC_008435.1 5334411 5335037 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 5334411..5335037 Rhodopseudomonas palustris BisA53 4362458 YP_783655.1 CDS RPE_4756 NC_008435.1 5335103 5335960 D PFAM: cytochrome c oxidase, subunit III; KEGG: rpc:RPC_4792 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III 5335103..5335960 Rhodopseudomonas palustris BisA53 4362459 YP_783656.1 CDS RPE_4757 NC_008435.1 5336134 5336550 D PFAM: protein of unknown function DUF983; KEGG: rpc:RPC_4793 protein of unknown function DUF983; hypothetical protein 5336134..5336550 Rhodopseudomonas palustris BisA53 4362460 YP_783657.1 CDS RPE_4758 NC_008435.1 5336547 5337332 D PFAM: Surfeit locus 1 family protein; KEGG: rpc:RPC_4794 surfeit locus 1; Surfeit locus 1 family protein 5336547..5337332 Rhodopseudomonas palustris BisA53 4362461 YP_783658.1 CDS RPE_4759 NC_008435.1 5337433 5338854 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 5337433..5338854 Rhodopseudomonas palustris BisA53 4362462 YP_783659.1 CDS RPE_4760 NC_008435.1 5338851 5340140 D PFAM: peptidase M16 domain protein; KEGG: rpc:RPC_4796 peptidase M16-like; peptidase M16 domain-containing protein 5338851..5340140 Rhodopseudomonas palustris BisA53 4362463 YP_783660.1 CDS RPE_4761 NC_008435.1 5340185 5340772 D PFAM: GCN5-related N-acetyltransferase; KEGG: rpc:RPC_4797 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 5340185..5340772 Rhodopseudomonas palustris BisA53 4362464 YP_783661.1 CDS RPE_4762 NC_008435.1 5340881 5341537 D KEGG: rpc:RPC_4798 hypothetical protein; hypothetical protein 5340881..5341537 Rhodopseudomonas palustris BisA53 4362465 YP_783662.1 CDS RPE_4763 NC_008435.1 5342083 5342589 R TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: rpc:RPC_4799 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase complement(5342083..5342589) Rhodopseudomonas palustris BisA53 4362466 YP_783663.1 CDS RPE_4764 NC_008435.1 5342665 5343543 R KEGG: bja:blr1538 hypothetical protein; hypothetical protein complement(5342665..5343543) Rhodopseudomonas palustris BisA53 4362467 YP_783664.1 CDS RPE_4765 NC_008435.1 5343626 5343916 R PFAM: plasmid stabilization system; KEGG: rpc:RPC_4802 addiction module toxin, RelE/StbE; plasmid stabilization system protein complement(5343626..5343916) Rhodopseudomonas palustris BisA53 4362468 YP_783665.1 CDS RPE_4766 NC_008435.1 5344313 5344519 R KEGG: rpc:RPC_4801 hypothetical protein; hypothetical protein complement(5344313..5344519) Rhodopseudomonas palustris BisA53 4362469 YP_783666.1 CDS ruvB NC_008435.1 5344578 5345693 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(5344578..5345693) Rhodopseudomonas palustris BisA53 4362470 YP_783667.1 CDS RPE_4768 NC_008435.1 5345785 5346213 R PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: rpa:RPA1101 cytidine deaminase; hypothetical protein complement(5345785..5346213) Rhodopseudomonas palustris BisA53 4362471 YP_783668.1 CDS ruvA NC_008435.1 5346210 5346827 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(5346210..5346827) Rhodopseudomonas palustris BisA53 4362472 YP_783669.1 CDS ruvC NC_008435.1 5346979 5347503 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(5346979..5347503) Rhodopseudomonas palustris BisA53 4362473 YP_783670.1 CDS RPE_4771 NC_008435.1 5347575 5348321 R PFAM: protein of unknown function DUF28; KEGG: rpc:RPC_4807 protein of unknown function DUF28; hypothetical protein complement(5347575..5348321) Rhodopseudomonas palustris BisA53 4362474 YP_783671.1 CDS RPE_4772 NC_008435.1 5348529 5350283 D PFAM: chemotaxis sensory transducer; KEGG: rpc:RPC_4808 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 5348529..5350283 Rhodopseudomonas palustris BisA53 4362475 YP_783672.1 CDS RPE_4773 NC_008435.1 5350614 5352440 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rpc:RPC_4810 radical SAM; radical SAM domain-containing protein 5350614..5352440 Rhodopseudomonas palustris BisA53 4362476 YP_783673.1 CDS RPE_4774 NC_008435.1 5352632 5353456 R TIGRFAM: conserved hypothetical protein; PFAM: metallophosphoesterase; KEGG: rpc:RPC_4811 hypothetical protein; hypothetical protein complement(5352632..5353456) Rhodopseudomonas palustris BisA53 4362477 YP_783674.1 CDS RPE_4775 NC_008435.1 5353458 5354045 R PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: rpc:RPC_4812 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase complement(5353458..5354045) Rhodopseudomonas palustris BisA53 4362478 YP_783675.1 CDS RPE_4776 NC_008435.1 5354416 5354910 R PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: rpc:RPC_4813 H+-transporting two-sector ATPase, B/B' subunit; H+-transporting two-sector ATPase subunit B/B' complement(5354416..5354910) Rhodopseudomonas palustris BisA53 4362479 YP_783676.1 CDS RPE_4777 NC_008435.1 5354915 5355460 R PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: rpc:RPC_4814 H+-transporting two-sector ATPase, B/B' subunit; H+-transporting two-sector ATPase subunit B/B' complement(5354915..5355460) Rhodopseudomonas palustris BisA53 4362480 YP_783677.1 CDS RPE_4778 NC_008435.1 5355514 5355741 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(5355514..5355741) Rhodopseudomonas palustris BisA53 4362481 YP_783678.1 CDS RPE_4779 NC_008435.1 5355781 5356530 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(5355781..5356530) Rhodopseudomonas palustris BisA53 4362482 YP_783679.1 CDS RPE_4780 NC_008435.1 5356592 5356975 R KEGG: nha:Nham_0270 FoF1 ATP synthase, subunit I; FoF1 ATP synthase subunit I complement(5356592..5356975) Rhodopseudomonas palustris BisA53 4362483 YP_783680.1 CDS RPE_4781 NC_008435.1 5357253 5357876 D PFAM: DSBA oxidoreductase; KEGG: rpc:RPC_4818 DsbA oxidoreductase; DSBA oxidoreductase 5357253..5357876 Rhodopseudomonas palustris BisA53 4362484 YP_783681.1 CDS RPE_4782 NC_008435.1 5357924 5358523 D KEGG: rpc:RPC_4819 hypothetical protein; hypothetical protein 5357924..5358523 Rhodopseudomonas palustris BisA53 4362485 YP_783682.1 CDS RPE_4783 NC_008435.1 5358691 5359164 D PFAM: protein of unknown function UPF0047; KEGG: rpc:RPC_4820 protein of unknown function UPF0047; hypothetical protein 5358691..5359164 Rhodopseudomonas palustris BisA53 4362486 YP_783683.1 CDS RPE_4784 NC_008435.1 5359447 5361111 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rpd:RPD_0835 general substrate transporter; general substrate transporter complement(5359447..5361111) Rhodopseudomonas palustris BisA53 4362487 YP_783684.1 CDS RPE_4785 NC_008435.1 5361436 5362107 D PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: rpc:RPC_4822 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 5361436..5362107 Rhodopseudomonas palustris BisA53 4362488 YP_783685.1 CDS RPE_4786 NC_008435.1 5362268 5365768 R PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_4823 periplasmic sensor hybrid histidine kinase; periplasmic sensor hybrid histidine kinase complement(5362268..5365768) Rhodopseudomonas palustris BisA53 4362489 YP_783686.1 CDS RPE_4787 NC_008435.1 5365984 5367213 R catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase complement(5365984..5367213) Rhodopseudomonas palustris BisA53 4362490 YP_783687.1 CDS RPE_4788 NC_008435.1 5367393 5368457 R PFAM: beta-lactamase domain protein; KEGG: rpc:RPC_4825 beta-lactamase-like; beta-lactamase domain-containing protein complement(5367393..5368457) Rhodopseudomonas palustris BisA53 4362491 YP_783688.1 CDS RPE_4789 NC_008435.1 5368812 5369498 R PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: rpc:RPC_4826 OmpA-like transmembrane region; OmpA domain-containing protein complement(5368812..5369498) Rhodopseudomonas palustris BisA53 4362492 YP_783689.1 CDS RPE_4790 NC_008435.1 5369870 5370085 D KEGG: nha:Nham_3429 hypothetical protein; hypothetical protein 5369870..5370085 Rhodopseudomonas palustris BisA53 4362493 YP_783690.1 CDS RPE_4791 NC_008435.1 5370087 5370848 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_4828 ABC transporter related; ABC transporter-like protein 5370087..5370848 Rhodopseudomonas palustris BisA53 4362494 YP_783691.1 CDS RPE_4792 NC_008435.1 5370845 5371723 D PFAM: ABC-3 protein; KEGG: rpc:RPC_4829 ABC-3; hypothetical protein 5370845..5371723 Rhodopseudomonas palustris BisA53 4362495 YP_783692.1 CDS RPE_4793 NC_008435.1 5371736 5372686 D PFAM: periplasmic solute binding protein; KEGG: rpb:RPB_4557 periplasmic solute binding protein; periplasmic solute binding protein 5371736..5372686 Rhodopseudomonas palustris BisA53 4362496 YP_783693.1 CDS RPE_4794 NC_008435.1 5372824 5373876 D PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: rpb:RPB_4556 cobalamin synthesis protein, P47K; cobalamin synthesis protein, P47K 5372824..5373876 Rhodopseudomonas palustris BisA53 4362497 YP_783694.1 CDS RPE_4795 NC_008435.1 5373873 5374892 D SMART: WD-40 repeat protein; KEGG: rpc:RPC_4832 WD-40 repeat; WD-40 repeat-containing protein 5373873..5374892 Rhodopseudomonas palustris BisA53 4362498 YP_783695.1 CDS RPE_4796 NC_008435.1 5374974 5375312 D KEGG: rpc:RPC_4833 hypothetical protein; hypothetical protein 5374974..5375312 Rhodopseudomonas palustris BisA53 4362499 YP_783696.1 CDS RPE_4797 NC_008435.1 5375672 5376703 R hypothetical protein complement(5375672..5376703) Rhodopseudomonas palustris BisA53 4362500 YP_783697.1 CDS RPE_4798 NC_008435.1 5376815 5377102 R hypothetical protein complement(5376815..5377102) Rhodopseudomonas palustris BisA53 4362501 YP_783698.1 CDS RPE_4799 NC_008435.1 5377584 5379011 R PFAM: homospermidine synthase; KEGG: rpc:RPC_4834 homospermidine synthase; homospermidine synthase complement(5377584..5379011) Rhodopseudomonas palustris BisA53 4362502 YP_783699.1 CDS RPE_4800 NC_008435.1 5379099 5379506 R PFAM: Endoribonuclease L-PSP; KEGG: rpa:RPA0867 endoribonuclease L-PSP; endoribonuclease L-PSP complement(5379099..5379506) Rhodopseudomonas palustris BisA53 4362503 YP_783700.1 CDS RPE_4801 NC_008435.1 5379810 5380397 R PFAM: GCN5-related N-acetyltransferase; KEGG: rpa:RPA0869 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(5379810..5380397) Rhodopseudomonas palustris BisA53 4362504 YP_783701.1 CDS RPE_4802 NC_008435.1 5380582 5381724 R PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: rpc:RPC_4837 ornithine decarboxylase; ornithine decarboxylase complement(5380582..5381724) Rhodopseudomonas palustris BisA53 4362505 YP_783702.1 CDS RPE_4803 NC_008435.1 5382436 5382696 R KEGG: rpb:RPB_4546 hypothetical protein; hypothetical protein complement(5382436..5382696) Rhodopseudomonas palustris BisA53 4362506 YP_783703.1 CDS RPE_4804 NC_008435.1 5382900 5384990 D PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: rpc:RPC_4839 peptidyl-dipeptidase DCP; peptidyl-dipeptidase Dcp 5382900..5384990 Rhodopseudomonas palustris BisA53 4362507 YP_783704.1 CDS RPE_4805 NC_008435.1 5384990 5385637 D PFAM: protein of unknown function DUF1007; KEGG: rpb:RPB_4544 protein of unknown function DUF1007; hypothetical protein 5384990..5385637 Rhodopseudomonas palustris BisA53 4362508 YP_783705.1 CDS RPE_4806 NC_008435.1 5385634 5386740 D PFAM: high-affinity nickel-transporter; KEGG: rpc:RPC_4841 high-affinity nickel-transporter; high-affinity nickel-transporter 5385634..5386740 Rhodopseudomonas palustris BisA53 4362509 YP_783706.1 CDS hemH NC_008435.1 5386904 5387941 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 5386904..5387941 Rhodopseudomonas palustris BisA53 4362510 YP_783707.1 CDS RPE_4808 NC_008435.1 5388098 5389093 D PFAM: band 7 protein; KEGG: rpd:RPD_0862 band 7 protein; hypothetical protein 5388098..5389093 Rhodopseudomonas palustris BisA53 4362511 YP_783708.1 CDS RPE_4809 NC_008435.1 5389194 5389631 D PFAM: protein of unknown function DUF107; KEGG: rpc:RPC_4844 protein of unknown function DUF107; hypothetical protein 5389194..5389631 Rhodopseudomonas palustris BisA53 4362512 YP_783709.1 CDS RPE_4810 NC_008435.1 5389875 5390246 R KEGG: rpc:RPC_4845 hypothetical protein; hypothetical protein complement(5389875..5390246) Rhodopseudomonas palustris BisA53 4362513 YP_783710.1 CDS recR NC_008435.1 5390299 5390904 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(5390299..5390904) Rhodopseudomonas palustris BisA53 4362514 YP_783711.1 CDS RPE_4812 NC_008435.1 5390907 5391224 R PFAM: conserved hypothetical protein 103; KEGG: rpc:RPC_4847 conserved hypothetical protein 103; hypothetical protein complement(5390907..5391224) Rhodopseudomonas palustris BisA53 4362515 YP_783712.1 CDS RPE_4813 NC_008435.1 5391268 5393157 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(5391268..5393157) Rhodopseudomonas palustris BisA53 4362516 YP_783713.1 CDS RPE_4814 NC_008435.1 5393583 5394008 D PFAM: histidine triad (HIT) protein; KEGG: rpc:RPC_4849 histidine triad (HIT) protein; histidine triad (HIT) protein 5393583..5394008 Rhodopseudomonas palustris BisA53 4362518 YP_783714.1 CDS RPE_4815 NC_008435.1 5394117 5395073 D PFAM: NUDIX hydrolase; KEGG: rpc:RPC_4850 NUDIX hydrolase; NUDIX hydrolase 5394117..5395073 Rhodopseudomonas palustris BisA53 4362519 YP_783715.1 CDS RPE_4816 NC_008435.1 5395082 5396014 D PFAM: PfkB domain protein; KEGG: rpc:RPC_4851 PfkB; ribokinase-like domain-containing protein 5395082..5396014 Rhodopseudomonas palustris BisA53 4362520 YP_783716.1 CDS RPE_4817 NC_008435.1 5396058 5396582 R TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_4853 hypothetical protein; hypothetical protein complement(5396058..5396582) Rhodopseudomonas palustris BisA53 4362521 YP_783717.1 CDS RPE_4818 NC_008435.1 5396705 5399320 R KEGG: rpb:RPB_0505 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent, C-terminal domain protein; SMART: DEAD/DEAH box helicase domain protein; ATP-dependent helicase HrpB complement(5396705..5399320) Rhodopseudomonas palustris BisA53 4362522 YP_783718.1 CDS RPE_4819 NC_008435.1 5399524 5400582 D PFAM: acyltransferase 3; KEGG: rpc:RPC_4855 acyltransferase 3; acyltransferase 3 5399524..5400582 Rhodopseudomonas palustris BisA53 4362523 YP_783719.1 CDS RPE_4820 NC_008435.1 5400756 5401349 R KEGG: rpb:RPB_0849 hypothetical protein; hypothetical protein complement(5400756..5401349) Rhodopseudomonas palustris BisA53 4362524 YP_783720.1 CDS RPE_4821 NC_008435.1 5401497 5404535 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 5401497..5404535 Rhodopseudomonas palustris BisA53 4362525 YP_783721.1 CDS pyrE NC_008435.1 5404555 5405199 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 5404555..5405199 Rhodopseudomonas palustris BisA53 4362526 YP_783722.1 CDS RPE_4823 NC_008435.1 5405339 5406127 D KEGG: rpc:RPC_4859 hypothetical protein; hypothetical protein 5405339..5406127 Rhodopseudomonas palustris BisA53 4362527 YP_783723.1 CDS RPE_4824 NC_008435.1 5406130 5406561 R KEGG: rpc:RPC_4860 hypothetical protein; hypothetical protein complement(5406130..5406561) Rhodopseudomonas palustris BisA53 4362528 YP_783724.1 CDS RPE_4825 NC_008435.1 5406618 5406983 D hypothetical protein 5406618..5406983 Rhodopseudomonas palustris BisA53 4362529 YP_783725.1 CDS RPE_4826 NC_008435.1 5407014 5409530 D KEGG: rpc:RPC_4861 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35; glycogen/starch/alpha-glucan phosphorylase 5407014..5409530 Rhodopseudomonas palustris BisA53 4362530 YP_783726.1 CDS RPE_4827 NC_008435.1 5409664 5410497 D KEGG: rpd:RPD_0951 hypothetical protein; hypothetical protein 5409664..5410497 Rhodopseudomonas palustris BisA53 4362531 YP_783727.1 CDS RPE_4828 NC_008435.1 5410509 5411165 D PFAM: ChaC family protein; KEGG: rpd:RPD_0947 ChaC-like protein; ChaC-like protein 5410509..5411165 Rhodopseudomonas palustris BisA53 4362532 YP_783728.1 CDS RPE_4829 NC_008435.1 5411159 5411959 R PFAM: phospholipid/glycerol acyltransferase; KEGG: rpc:RPC_4864 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(5411159..5411959) Rhodopseudomonas palustris BisA53 4362533 YP_783729.1 CDS RPE_4830 NC_008435.1 5411971 5412672 R PFAM: protein of unknown function DUF218; KEGG: rpc:RPC_4865 protein of unknown function DUF218; hypothetical protein complement(5411971..5412672) Rhodopseudomonas palustris BisA53 4362534 YP_783730.1 CDS RPE_4831 NC_008435.1 5412866 5413837 R PFAM: protein of unknown function DUF214; KEGG: rpc:RPC_4866 protein of unknown function DUF214; hypothetical protein complement(5412866..5413837) Rhodopseudomonas palustris BisA53 4362535 YP_783731.1 CDS RPE_4832 NC_008435.1 5413830 5414489 R KEGG: rpa:RPA4736 putative cell division ATP-binding protein FtsE, ABC type transporter; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE complement(5413830..5414489) Rhodopseudomonas palustris BisA53 4362536 YP_783732.1 CDS RPE_4833 NC_008435.1 5414678 5415658 D TIGRFAM: MJ0042 family finger-like protein; KEGG: rpc:RPC_4868 zinc finger/thioredoxin putative; Zinc finger/thioredoxin putative 5414678..5415658 Rhodopseudomonas palustris BisA53 4362537 YP_783733.1 CDS RPE_4834 NC_008435.1 5415661 5416032 D PFAM: response regulator receiver; KEGG: rpd:RPD_0941 response regulator receiver; response regulator receiver protein 5415661..5416032 Rhodopseudomonas palustris BisA53 4362538 YP_783734.1 CDS RPE_4835 NC_008435.1 5416175 5417809 D KEGG: rpc:RPC_4870 hypothetical protein; hypothetical protein 5416175..5417809 Rhodopseudomonas palustris BisA53 4362539 YP_783735.1 CDS RPE_4836 NC_008435.1 5417790 5419043 D KEGG: rpc:RPC_4870 hypothetical protein; hypothetical protein 5417790..5419043 Rhodopseudomonas palustris BisA53 4362540 YP_783736.1 CDS RPE_4837 NC_008435.1 5419177 5420664 D PFAM: Pyridoxal-dependent decarboxylase; KEGG: rpc:RPC_4871 pyridoxal-dependent decarboxylase; pyridoxal-dependent decarboxylase 5419177..5420664 Rhodopseudomonas palustris BisA53 4362541 YP_783737.1 CDS RPE_4838 NC_008435.1 5420651 5423209 R TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_4872 hypothetical protein; hypothetical protein complement(5420651..5423209) Rhodopseudomonas palustris BisA53 4362542 YP_783738.1 CDS RPE_4839 NC_008435.1 5423340 5423798 D PFAM: Carboxymuconolactone decarboxylase; KEGG: rpd:RPD_0939 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 5423340..5423798 Rhodopseudomonas palustris BisA53 4362543 YP_783739.1 CDS RPE_4840 NC_008435.1 5424024 5425289 R TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: rpb:RPB_0829 diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(5424024..5425289) Rhodopseudomonas palustris BisA53 4362544 YP_783740.1 CDS RPE_4841 NC_008435.1 5425313 5425564 R KEGG: rpc:RPC_4874 hypothetical protein; hypothetical protein complement(5425313..5425564) Rhodopseudomonas palustris BisA53 4362545 YP_783741.1 CDS RPE_4842 NC_008435.1 5425644 5427098 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(5425644..5427098) Rhodopseudomonas palustris BisA53 4362546 YP_783742.1 CDS RPE_4843 NC_008435.1 5427164 5427838 D PFAM: Redoxin domain protein; KEGG: rpc:RPC_4876 thioredoxin-like; redoxin domain-containing protein 5427164..5427838 Rhodopseudomonas palustris BisA53 4362547 YP_783743.1 CDS RPE_4844 NC_008435.1 5427951 5428310 D PFAM: protein of unknown function DUF1428; KEGG: rpd:RPD_0934 protein of unknown function DUF1428; hypothetical protein 5427951..5428310 Rhodopseudomonas palustris BisA53 4362548 YP_783744.1 CDS RPE_4845 NC_008435.1 5428323 5428523 R KEGG: rpc:RPC_4877 hypothetical protein; hypothetical protein complement(5428323..5428523) Rhodopseudomonas palustris BisA53 4362549 YP_783745.1 CDS RPE_4846 NC_008435.1 5428669 5428878 R hypothetical protein complement(5428669..5428878) Rhodopseudomonas palustris BisA53 4362550 YP_783746.1 CDS RPE_4847 NC_008435.1 5429125 5430006 R converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase complement(5429125..5430006) Rhodopseudomonas palustris BisA53 4362551 YP_783747.1 CDS RPE_4848 NC_008435.1 5430138 5431085 R PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: rpd:RPD_0931 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha complement(5430138..5431085) Rhodopseudomonas palustris BisA53 4362552 YP_783748.1 CDS RPE_4849 NC_008435.1 5431085 5431834 R PFAM: electron transfer flavoprotein beta-subunit; KEGG: rpa:RPA4750 electron transfer flavoprotein beta chain, (ETFSS); electron transfer flavoprotein subunit beta complement(5431085..5431834) Rhodopseudomonas palustris BisA53 4362553 YP_783749.1 CDS RPE_4850 NC_008435.1 5431945 5432517 R TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: rpc:RPC_4881 ATP; ATP--cobalamin adenosyltransferase complement(5431945..5432517) Rhodopseudomonas palustris BisA53 4362554 YP_783750.1 CDS RPE_4851 NC_008435.1 5432551 5432757 R KEGG: rpd:RPD_0928 hypoxia induced protein conserved region; hypoxia induced protein complement(5432551..5432757) Rhodopseudomonas palustris BisA53 4362555 YP_783751.1 CDS RPE_4852 NC_008435.1 5432870 5433763 D PFAM: ribonuclease BN; KEGG: rpc:RPC_4883 ribonuclease BN; ribonuclease BN 5432870..5433763 Rhodopseudomonas palustris BisA53 4362556 YP_783752.1 CDS RPE_4853 NC_008435.1 5433690 5434850 R PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_4884 histidine kinase; histidine kinase complement(5433690..5434850) Rhodopseudomonas palustris BisA53 4362557 YP_783753.1 CDS RPE_4854 NC_008435.1 5435155 5436036 R this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase complement(5435155..5436036) Rhodopseudomonas palustris BisA53 4362558 YP_783754.1 CDS RPE_4855 NC_008435.1 5436074 5436736 D PFAM: HhH-GPD family protein; KEGG: rpa:RPA4755 possible DNA-3-methyladenine glycosidase II; hypothetical protein 5436074..5436736 Rhodopseudomonas palustris BisA53 4362559 YP_783755.1 CDS RPE_4856 NC_008435.1 5436892 5439615 D KEGG: nwi:Nwi_0071 hypothetical protein; hypothetical protein 5436892..5439615 Rhodopseudomonas palustris BisA53 4362560 YP_783756.1 CDS RPE_4857 NC_008435.1 5439624 5440199 D hypothetical protein 5439624..5440199 Rhodopseudomonas palustris BisA53 4362561 YP_783757.1 CDS RPE_4858 NC_008435.1 5440180 5441010 R KEGG: rpb:RPB_0080 hypothetical protein; hypothetical protein complement(5440180..5441010) Rhodopseudomonas palustris BisA53 4362562 YP_783758.1 CDS RPE_4859 NC_008435.1 5441096 5441698 R KEGG: rpc:RPC_0722 hypothetical protein; hypothetical protein complement(5441096..5441698) Rhodopseudomonas palustris BisA53 4362563 YP_783759.1 CDS RPE_4860 NC_008435.1 5441695 5442027 R KEGG: rpc:RPC_0723 hypothetical protein; hypothetical protein complement(5441695..5442027) Rhodopseudomonas palustris BisA53 4362564 YP_783760.1 CDS RPE_4861 NC_008435.1 5442281 5442550 R KEGG: rpa:RPA4640 hypothetical protein; hypothetical protein complement(5442281..5442550) Rhodopseudomonas palustris BisA53 4362565 YP_783761.1 CDS RPE_4862 NC_008435.1 5442582 5443061 R PFAM: response regulator receiver; KEGG: rpa:RPA4322 response regulator receiver (CheY-like protein); response regulator receiver protein complement(5442582..5443061) Rhodopseudomonas palustris BisA53 4362566 YP_783762.1 CDS RPE_4863 NC_008435.1 5443221 5445392 R TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: rpc:RPC_4889 PAS/PAC sensor hybrid histidine kinase; PAS/PAC sensor hybrid histidine kinase complement(5443221..5445392) Rhodopseudomonas palustris BisA53 4362567 YP_783763.1 CDS RPE_4864 NC_008435.1 5445884 5446249 D PFAM: PRC-barrel domain protein; KEGG: rpc:RPC_4890 PRC-barrel; PRC-barrel domain-containing protein 5445884..5446249 Rhodopseudomonas palustris BisA53 4362568 YP_783764.1 CDS RPE_4865 NC_008435.1 5446611 5448227 R PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: rpa:RPA4759 glycosyl hydrolase, family 13; alpha amylase complement(5446611..5448227) Rhodopseudomonas palustris BisA53 4362569 YP_783765.1 CDS RPE_4866 NC_008435.1 5448599 5449126 D KEGG: rpc:RPC_4892 hypothetical protein; hypothetical protein 5448599..5449126 Rhodopseudomonas palustris BisA53 4362570 YP_783766.1 CDS RPE_4867 NC_008435.1 5449320 5449901 D KEGG: rpd:RPD_2376 cytochrome c family protein; cytochrome c family protein 5449320..5449901 Rhodopseudomonas palustris BisA53 4362571 YP_783767.1 CDS RPE_4868 NC_008435.1 5449989 5450327 R PFAM: DNA polymerase, beta domain protein region; KEGG: rpd:RPD_1926 DNA polymerase, beta-like region; DNA polymerase subunit beta complement(5449989..5450327) Rhodopseudomonas palustris BisA53 4362572 YP_783768.1 CDS RPE_4869 NC_008435.1 5450845 5451423 D TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: rpc:RPC_4898 methylated-DNA--protein-cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase 5450845..5451423 Rhodopseudomonas palustris BisA53 4362574 YP_783769.1 CDS RPE_4870 NC_008435.1 5451458 5452864 R PFAM: multi antimicrobial extrusion protein MatE; KEGG: rpa:RPA4763 possible cation efflux pump; multi anti extrusion protein MatE complement(5451458..5452864) Rhodopseudomonas palustris BisA53 4362575 YP_783770.1 CDS RPE_4871 NC_008435.1 5453115 5454464 D KEGG: rpb:RPB_0795 L-sorbosone dehydrogenase; L-sorbosone dehydrogenase 5453115..5454464 Rhodopseudomonas palustris BisA53 4362576 YP_783771.1 CDS RPE_4872 NC_008435.1 5454654 5456651 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: metallophosphoesterase; KEGG: rpd:RPD_0905 twin-arginine translocation pathway signal; metallophosphoesterase 5454654..5456651 Rhodopseudomonas palustris BisA53 4362577 YP_783772.1 CDS RPE_4873 NC_008435.1 5456691 5457311 R PFAM: protein of unknown function DUF820; KEGG: rpc:RPC_0006 protein of unknown function DUF820; hypothetical protein complement(5456691..5457311) Rhodopseudomonas palustris BisA53 4362578 YP_783773.1 CDS RPE_4874 NC_008435.1 5457446 5458066 D PFAM: protein of unknown function DUF820; KEGG: rpc:RPC_4289 hypothetical protein; hypothetical protein 5457446..5458066 Rhodopseudomonas palustris BisA53 4362579 YP_783774.1 CDS RPE_4875 NC_008435.1 5458170 5458517 D PFAM: DNA polymerase, beta domain protein region; KEGG: rpc:RPC_4901 DNA polymerase, beta-like region; DNA polymerase subunit beta 5458170..5458517 Rhodopseudomonas palustris BisA53 4362580 YP_783775.1 CDS RPE_4876 NC_008435.1 5458523 5459629 R Catalyzes the deamination of dCTP to form dUTP; 2'-deoxycytidine 5'-triphosphate deaminase complement(5458523..5459629) Rhodopseudomonas palustris BisA53 4362581 YP_783776.1 CDS RPE_4877 NC_008435.1 5459887 5461086 D catalyzes the conversion of O-succinylhomoserine and sulfide to homocysteine; second step in methionine biosynthesis; O-succinylhomoserine sulfhydrylase 5459887..5461086 Rhodopseudomonas palustris BisA53 4362582 YP_783777.1 CDS RPE_4878 NC_008435.1 5461323 5462273 R PFAM: lipolytic enzyme, G-D-S-L family; KEGG: rpc:RPC_4910 lipolytic enzyme, G-D-S-L; GDSL family lipase complement(5461323..5462273) Rhodopseudomonas palustris BisA53 4362583 YP_783778.1 CDS RPE_4879 NC_008435.1 5462273 5463037 R KEGG: rpc:RPC_4911 hypothetical protein; hypothetical protein complement(5462273..5463037) Rhodopseudomonas palustris BisA53 4362584 YP_783779.1 CDS RPE_4880 NC_008435.1 5463034 5464269 R KEGG: rpc:RPC_4912 putative OpgC protein; putative OpgC protein complement(5463034..5464269) Rhodopseudomonas palustris BisA53 4362585 YP_783780.1 CDS apaG NC_008435.1 5464462 5464953 D protein associated with Co2+ and Mg2+ efflux; ApaG protein 5464462..5464953 Rhodopseudomonas palustris BisA53 4362586 YP_783781.1 CDS hslO NC_008435.1 5465154 5466155 R becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin complement(5465154..5466155) Rhodopseudomonas palustris BisA53 4362587 YP_783782.1 CDS RPE_4883 NC_008435.1 5466392 5467330 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(5466392..5467330) Rhodopseudomonas palustris BisA53 4362588 YP_783783.1 CDS argD NC_008435.1 5467330 5468544 R DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine transaminase protein complement(5467330..5468544) Rhodopseudomonas palustris BisA53 4362589 YP_783784.1 CDS RPE_4885 NC_008435.1 5469011 5469520 D PFAM: GcrA cell cycle regulator; KEGG: rpd:RPD_0894 GcrA cell cycle regulator; GcrA cell cycle regulator 5469011..5469520 Rhodopseudomonas palustris BisA53 4362590 YP_783785.1 CDS RPE_4886 NC_008435.1 5469761 5470465 R TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_4918 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(5469761..5470465) Rhodopseudomonas palustris BisA53 4362591 YP_783786.1 CDS RPE_4887 NC_008435.1 5470480 5471196 R TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: rpc:RPC_4919 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU complement(5470480..5471196) Rhodopseudomonas palustris BisA53 4362592 YP_783787.1 CDS pstB NC_008435.1 5471214 5472041 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(5471214..5472041) Rhodopseudomonas palustris BisA53 4362593 YP_783788.1 CDS RPE_4889 NC_008435.1 5472038 5472883 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_0778 phosphate transport system permease protein 2; phosphate ABC transporter permease complement(5472038..5472883) Rhodopseudomonas palustris BisA53 4362594 YP_783789.1 CDS RPE_4890 NC_008435.1 5472886 5473884 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_0777 phosphate ABC transporter, permease protein PstC; phosphate ABC transporter permease complement(5472886..5473884) Rhodopseudomonas palustris BisA53 4362595 YP_783790.1 CDS RPE_4891 NC_008435.1 5474158 5475171 R TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: rpc:RPC_4923 periplasmic phosphate binding protein; periplasmic phosphate binding protein complement(5474158..5475171) Rhodopseudomonas palustris BisA53 4362596 YP_783791.1 CDS RPE_4892 NC_008435.1 5475314 5476666 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_4924 histidine kinase; histidine kinase complement(5475314..5476666) Rhodopseudomonas palustris BisA53 4362597 YP_783792.1 CDS RPE_4893 NC_008435.1 5476666 5477700 R KEGG: rpc:RPC_4925 hypothetical protein; hypothetical protein complement(5476666..5477700) Rhodopseudomonas palustris BisA53 4362598 YP_783793.1 CDS RPE_4894 NC_008435.1 5477925 5478221 R KEGG: rpc:RPC_4926 hypothetical protein; hypothetical protein complement(5477925..5478221) Rhodopseudomonas palustris BisA53 4362599 YP_783794.1 CDS RPE_4895 NC_008435.1 5478224 5479621 R PFAM: OmpA/MotB domain protein; KEGG: rpc:RPC_4927 OmpA/MotB; OmpA/MotB domain-containing protein complement(5478224..5479621) Rhodopseudomonas palustris BisA53 4362600 YP_783795.1 CDS RPE_4896 NC_008435.1 5479785 5480843 D PFAM: polysaccharide deacetylase; KEGG: rpc:RPC_4928 polysaccharide deacetylase; polysaccharide deacetylase 5479785..5480843 Rhodopseudomonas palustris BisA53 4362601 YP_783796.1 CDS RPE_4897 NC_008435.1 5480989 5482851 R molecular chaperone; heat shock protein 90 complement(5480989..5482851) Rhodopseudomonas palustris BisA53 4362602 YP_783797.1 CDS RPE_4898 NC_008435.1 5482929 5484281 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_4931 periplasmic sensor signal transduction histidine kinase; periplasmic sensor signal transduction histidine kinase complement(5482929..5484281) Rhodopseudomonas palustris BisA53 4362603 YP_783798.1 CDS RPE_4899 NC_008435.1 5484278 5484943 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_4932 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(5484278..5484943) Rhodopseudomonas palustris BisA53 4362604 YP_783799.1 CDS RPE_4900 NC_008435.1 5484943 5485308 R PFAM: Propeptide, PepSY amd peptidase M4; KEGG: rpc:RPC_4933 propeptide, PepSY amd peptidase M4; peptidase complement(5484943..5485308) Rhodopseudomonas palustris BisA53 4362605 YP_783800.1 CDS RPE_4901 NC_008435.1 5485482 5486063 D PFAM: cytochrome B561; KEGG: rpd:RPD_0923 cytochrome b561; cytochrome B561 5485482..5486063 Rhodopseudomonas palustris BisA53 4362606 YP_783801.1 CDS RPE_4902 NC_008435.1 5486420 5486905 D hypothetical protein 5486420..5486905 Rhodopseudomonas palustris BisA53 4362607 YP_783802.1 CDS RPE_4903 NC_008435.1 5486972 5487304 D KEGG: rpc:RPC_4934 hypothetical protein; hypothetical protein 5486972..5487304 Rhodopseudomonas palustris BisA53 4362608 YP_783803.1 CDS RPE_4904 NC_008435.1 5487378 5487947 R KEGG: rpc:RPC_4628 hypothetical protein; hypothetical protein complement(5487378..5487947) Rhodopseudomonas palustris BisA53 4362609 YP_783804.1 CDS RPE_4905 NC_008435.1 5488261 5488851 R hypothetical protein complement(5488261..5488851) Rhodopseudomonas palustris BisA53 4362610 YP_783805.1 CDS mtnA NC_008435.1 5488953 5490062 R isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase complement(5488953..5490062) Rhodopseudomonas palustris BisA53 4362611 YP_783806.1 CDS RPE_4907 NC_008435.1 5490070 5490945 R Catalyzes the reversible phosphorolysis of 5'-deoxy-5'- methylthioadenosine (MTA) to adenine and 5-methylthio-D-ribose-1- phosphate; 5'-methylthioadenosine phosphorylase complement(5490070..5490945) Rhodopseudomonas palustris BisA53 4362612 YP_783807.1 CDS RPE_4908 NC_008435.1 5491170 5492324 D PFAM: iron-containing alcohol dehydrogenase; KEGG: rpa:RPA4822 possible alcohol dehydrogenase; iron-containing alcohol dehydrogenase 5491170..5492324 Rhodopseudomonas palustris BisA53 4362613 YP_783808.1 CDS RPE_4909 NC_008435.1 5492450 5493676 R KEGG: bja:blr0529 hypothetical protein; hypothetical protein complement(5492450..5493676) Rhodopseudomonas palustris BisA53 4362614 YP_783809.1 CDS RPE_4910 NC_008435.1 5493828 5495078 R TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: bja:blr0530 hypothetical protein; TRAP transporter solute receptor TAXI family protein complement(5493828..5495078) Rhodopseudomonas palustris BisA53 4362615 YP_783810.1 CDS RPE_4911 NC_008435.1 5495807 5497357 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 5495807..5497357 Rhodopseudomonas palustris BisA53 4362616 YP_783811.1 CDS RPE_4912 NC_008435.1 5497749 5499602 D TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; KEGG: rpd:RPD_4412 ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase RecQ 5497749..5499602 Rhodopseudomonas palustris BisA53 4362617 YP_783812.1 CDS RPE_4913 NC_008435.1 5499748 5499978 D TIGRFAM: putative regulatory protein, FmdB family; KEGG: rpb:RPB_4703 hypothetical protein; FmdB family regulatory protein 5499748..5499978 Rhodopseudomonas palustris BisA53 4362618 YP_783813.1 CDS RPE_4914 NC_008435.1 5500112 5500390 R KEGG: rpa:RPA4828 hypothetical protein; hypothetical protein complement(5500112..5500390) Rhodopseudomonas palustris BisA53 4362619 YP_783814.1 CDS RPE_4915 NC_008435.1 5500596 5501693 R KEGG: rpc:RPC_4938 response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; response regulator receiver modulated metal dependent phosphohydrolase complement(5500596..5501693) Rhodopseudomonas palustris BisA53 4362620 YP_783815.1 CDS RPE_4916 NC_008435.1 5501888 5502259 D KEGG: rpb:RPB_4707 hypothetical protein; hypothetical protein 5501888..5502259 Rhodopseudomonas palustris BisA53 4362621 YP_783816.1 CDS RPE_4917 NC_008435.1 5502285 5503007 R PFAM: polysaccharide export protein; KEGG: rpc:RPC_4940 polysaccharide export protein; polysaccharide export protein complement(5502285..5503007) Rhodopseudomonas palustris BisA53 4362622 YP_783817.1 CDS RPE_4918 NC_008435.1 5503201 5503857 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(5503201..5503857) Rhodopseudomonas palustris BisA53 4362623 YP_783818.1 CDS RPE_4919 NC_008435.1 5504032 5504349 R KEGG: rpc:RPC_4942 hypothetical protein; hypothetical protein complement(5504032..5504349) Rhodopseudomonas palustris BisA53 4362624 YP_783819.1 CDS rpsT NC_008435.1 5504674 5504940 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 5504674..5504940 Rhodopseudomonas palustris BisA53 4362625 RPE_R0001 tRNA RPE_R0001 NC_008435.1 53344 53419 D tRNA-Ala 53344..53419 Rhodopseudomonas palustris BisA53 4357755 RPE_R0002 tRNA RPE_R0002 NC_008435.1 70502 70577 R tRNA-Thr complement(70502..70577) Rhodopseudomonas palustris BisA53 4358323 RPE_R0003 tRNA RPE_R0003 NC_008435.1 131900 131976 R tRNA-Arg complement(131900..131976) Rhodopseudomonas palustris BisA53 4357908 RPE_R0005 tRNA RPE_R0005 NC_008435.1 452418 452492 D tRNA-Gly 452418..452492 Rhodopseudomonas palustris BisA53 4359173 RPE_R0006 tRNA RPE_R0006 NC_008435.1 487400 487475 R tRNA-Ala complement(487400..487475) Rhodopseudomonas palustris BisA53 4357685 RPE_R0007 tRNA RPE_R0007 NC_008435.1 553323 553409 D tRNA-Leu 553323..553409 Rhodopseudomonas palustris BisA53 4358634 RPE_R0009 tRNA RPE_R0009 NC_008435.1 609133 609222 D tRNA-Ser 609133..609222 Rhodopseudomonas palustris BisA53 4357888 RPE_R0010 tRNA RPE_R0010 NC_008435.1 712113 712189 R tRNA-Arg complement(712113..712189) Rhodopseudomonas palustris BisA53 4358111 RPE_R0011 tRNA RPE_R0011 NC_008435.1 787043 787117 D tRNA-Val 787043..787117 Rhodopseudomonas palustris BisA53 4359706 RPE_R0013 tRNA RPE_R0013 NC_008435.1 863295 863371 D tRNA-Ile 863295..863371 Rhodopseudomonas palustris BisA53 4358854 RPE_R0014 tRNA RPE_R0014 NC_008435.1 863419 863494 D tRNA-Ala 863419..863494 Rhodopseudomonas palustris BisA53 4358855 RPE_R0017 tRNA RPE_R0017 NC_008435.1 879633 879717 R tRNA-Leu complement(879633..879717) Rhodopseudomonas palustris BisA53 4358871 RPE_R0018 tRNA RPE_R0018 NC_008435.1 911929 912003 R tRNA-Glu complement(911929..912003) Rhodopseudomonas palustris BisA53 4358973 RPE_R0019 tRNA RPE_R0019 NC_008435.1 1174349 1174425 R tRNA-Met complement(1174349..1174425) Rhodopseudomonas palustris BisA53 4359873 RPE_R0020 tRNA RPE_R0020 NC_008435.1 1217418 1217492 D tRNA-Gln 1217418..1217492 Rhodopseudomonas palustris BisA53 4360036 RPE_R0026 tRNA RPE_R0026 NC_008435.1 2450931 2451006 D tRNA-Lys 2450931..2451006 Rhodopseudomonas palustris BisA53 4359570 RPE_R0029 tRNA RPE_R0029 NC_008435.1 2550824 2550910 D tRNA-Leu 2550824..2550910 Rhodopseudomonas palustris BisA53 4359125 RPE_R0030 tRNA RPE_R0030 NC_008435.1 2608855 2608929 D tRNA-Thr 2608855..2608929 Rhodopseudomonas palustris BisA53 4359224 RPE_R0031 tRNA RPE_R0031 NC_008435.1 2771100 2771184 D tRNA-Leu 2771100..2771184 Rhodopseudomonas palustris BisA53 4360115 RPE_R0032 tRNA RPE_R0032 NC_008435.1 2779292 2779368 D tRNA-Val 2779292..2779368 Rhodopseudomonas palustris BisA53 4360121 RPE_R0033 tRNA RPE_R0033 NC_008435.1 2786010 2786086 D tRNA-Asp 2786010..2786086 Rhodopseudomonas palustris BisA53 4360126 RPE_R0034 tRNA RPE_R0034 NC_008435.1 2999930 3000019 R tRNA-Ser complement(2999930..3000019) Rhodopseudomonas palustris BisA53 4360353 RPE_R0035 tRNA RPE_R0035 NC_008435.1 3012925 3013018 D tRNA-Ser 3012925..3013018 Rhodopseudomonas palustris BisA53 4360369 RPE_R0036 tRNA RPE_R0036 NC_008435.1 3052755 3052831 R tRNA-Arg complement(3052755..3052831) Rhodopseudomonas palustris BisA53 4360401 RPE_R0037 tRNA RPE_R0037 NC_008435.1 3086508 3086581 D tRNA-Cys 3086508..3086581 Rhodopseudomonas palustris BisA53 4360424 RPE_R0038 tRNA RPE_R0038 NC_008435.1 3088451 3088525 R tRNA-Asn complement(3088451..3088525) Rhodopseudomonas palustris BisA53 4360428 RPE_R0039 tRNA RPE_R0039 NC_008435.1 3122684 3122759 R tRNA-Lys complement(3122684..3122759) Rhodopseudomonas palustris BisA53 4360462 RPE_R0040 tRNA RPE_R0040 NC_008435.1 3181412 3181489 R tRNA-Pro complement(3181412..3181489) Rhodopseudomonas palustris BisA53 4360517 RPE_R0041 tRNA RPE_R0041 NC_008435.1 3270585 3270661 R tRNA-Pro complement(3270585..3270661) Rhodopseudomonas palustris BisA53 4360601 RPE_R0042 tRNA RPE_R0042 NC_008435.1 3274587 3274661 D tRNA-Glu 3274587..3274661 Rhodopseudomonas palustris BisA53 4360607 RPE_R0047 tRNA RPE_R0047 NC_008435.1 3829967 3830051 R tRNA-Leu complement(3829967..3830051) Rhodopseudomonas palustris BisA53 4361121 RPE_R0048 tRNA RPE_R0048 NC_008435.1 3841218 3841294 D tRNA-Arg 3841218..3841294 Rhodopseudomonas palustris BisA53 4361134 RPE_R0049 tRNA RPE_R0049 NC_008435.1 4031186 4031261 R tRNA-Trp complement(4031186..4031261) Rhodopseudomonas palustris BisA53 4361299 RPE_R0050 tRNA RPE_R0050 NC_008435.1 4093728 4093801 R tRNA-Gly complement(4093728..4093801) Rhodopseudomonas palustris BisA53 4361353 RPE_R0051 tRNA RPE_R0051 NC_008435.1 4110473 4110558 R tRNA-Tyr complement(4110473..4110558) Rhodopseudomonas palustris BisA53 4361372 RPE_R0052 tRNA RPE_R0052 NC_008435.1 4121694 4121767 D tRNA-Gln 4121694..4121767 Rhodopseudomonas palustris BisA53 4361382 RPE_R0053 tRNA RPE_R0053 NC_008435.1 4378927 4379003 R tRNA-Met complement(4378927..4379003) Rhodopseudomonas palustris BisA53 4361605 RPE_R0054 tRNA RPE_R0054 NC_008435.1 4548052 4548128 R tRNA-His complement(4548052..4548128) Rhodopseudomonas palustris BisA53 4361753 RPE_R0055 tRNA RPE_R0055 NC_008435.1 4785431 4785506 R tRNA-Met complement(4785431..4785506) Rhodopseudomonas palustris BisA53 4361970 RPE_R0056 tRNA RPE_R0056 NC_008435.1 4799089 4799163 D tRNA-Val 4799089..4799163 Rhodopseudomonas palustris BisA53 4361983 RPE_R0061 tRNA RPE_R0061 NC_008435.1 4853944 4854019 R tRNA-Ala complement(4853944..4854019) Rhodopseudomonas palustris BisA53 4362031 RPE_R0062 tRNA RPE_R0062 NC_008435.1 4854067 4854143 R tRNA-Ile complement(4854067..4854143) Rhodopseudomonas palustris BisA53 4362032 RPE_R0064 tRNA RPE_R0064 NC_008435.1 4911104 4911180 R tRNA-Pro complement(4911104..4911180) Rhodopseudomonas palustris BisA53 4362079 RPE_R0065 tRNA RPE_R0065 NC_008435.1 5015656 5015731 R tRNA-Phe complement(5015656..5015731) Rhodopseudomonas palustris BisA53 4362178 RPE_R0066 tRNA RPE_R0066 NC_008435.1 5031742 5031816 D tRNA-Thr 5031742..5031816 Rhodopseudomonas palustris BisA53 4362196 RPE_R0067 tRNA RPE_R0067 NC_008435.1 5088333 5088422 D tRNA-Ser 5088333..5088422 Rhodopseudomonas palustris BisA53 4362255 RPE_R0068 tRNA RPE_R0068 NC_008435.1 5202363 5202439 D tRNA-Arg 5202363..5202439 Rhodopseudomonas palustris BisA53 4362342 RPE_R0070 tRNA RPE_R0070 NC_008435.1 5450554 5450627 R tRNA-Gly complement(5450554..5450627) Rhodopseudomonas palustris BisA53 4362573 RPE_R0012 rRNA RPE_R0012 NC_008435.1 861574 863055 D 16S ribosomal RNA 861574..863055 Rhodopseudomonas palustris BisA53 4358853 RPE_R0015 rRNA RPE_R0015 NC_008435.1 864126 866778 D 23S ribosomal RNA 864126..866778 Rhodopseudomonas palustris BisA53 4358856 RPE_R0016 rRNA RPE_R0016 NC_008435.1 866937 867051 D 5S ribosomal RNA 866937..867051 Rhodopseudomonas palustris BisA53 4358857 RPE_R0059 rRNA RPE_R0059 NC_008435.1 4850428 4850542 R 5S ribosomal RNA complement(4850428..4850542) Rhodopseudomonas palustris BisA53 4362029 RPE_R0060 rRNA RPE_R0060 NC_008435.1 4850692 4853344 R 23S ribosomal RNA complement(4850692..4853344) Rhodopseudomonas palustris BisA53 4362030 RPE_R0063 rRNA RPE_R0063 NC_008435.1 4854382 4855863 R 16S ribosomal RNA complement(4854382..4855863) Rhodopseudomonas palustris BisA53 4362033