-- dump date 20140620_032308 -- class Genbank::CDS -- table cds_note -- id note NP_863664.1 best DB hits: BLAST: pir:D83545; probable helicase PA0799 [imported] - Pseudomonas; E=7e-95 embl:CAA67095.1; (X98455) SNF [Bacillus cereus]; E=8e-94 pir:C72027; swisnf family helicase_2 - Chlamydophila pneumoniae; E=4e-87 COG: PA0799; COG0553 Superfamily II DNA/RNA helicases, SNF2 family; E=7e-96 PFAM: PF02803; Thiolase, C-terminal domain; E=0.11 PF00176; SNF2 and others N-terminal domain; E=3.9e-64 PF00271; Helicase conserved C-terminal doma; E=1.2e-24 NP_863671.1 PMID: 2506434 best DB hits: BLAST: pir:B32491; myosin heavy chain 2, muscle - fruit fly (Drosophila; E=3e-09 pir:A32491; myosin heavy chain 1, muscle - fruit fly (Drosophila; E=3e-09 swissprot:P05661; MYSA_DROME MYOSIN HEAVY CHAIN, MUSCLE; E=4e-09 COG: VNG0342G; COG1196 Chromosome segregation ATPases; E=5e-05 aefA; COG3264 Small-conductance mechanosensitive channel; E=9e-04 Ta0787; COG1196 Chromosome segregation ATPases; E=0.002 PFAM: PF00038; Intermediate filament protein; E=0.87 NP_863672.1 best DB hits: BLAST: pir:F75417; L-sorbosone dehydrogenase - Deinococcus radiodurans; E=0.13 embl:CAB94635.1; (AL359215) secreted glycosyl hydrolase.; E=0.26 PFAM: PF00034; Cytochrome c; E=0.35 NP_863681.1 PMID: 2820936 best DB hits: BLAST: pir:S46409; hypothetical protein - Aeromonas salmonicida -----; E=2e-29 embl:CAA05973.1; (AJ003194) transposase [Lactobacillus casei]; E=2e-27 swissprot:P37247; TRA4_BACFR TRANSPOSASE FOR INSERTION SEQUENCE; E=2e-26 COG: NMB0225; COG2826 Transposase, IS30 family; E=3e-27 PFAM: PF00665; Integrase core domain; E=2.4e-16 NP_863705.1 PMID: 10192928 best DB hits: BLAST: ddbj:BAB04609.1; (AP001510) BH0890~unknown conserved protein in; E=2e-31 embl:CAB95973.1; (AL360034) hypothetical protein 2SCG4.02c; E=2e-25 pir:A70710; hypothetical protein Rv0790c - Mycobacterium; E=1e-05 COG: BH0890; COG1305 transglutaminases, cysteine; E=2e-32 PFAM: PF01841; Transglutaminase-like superfam; E=0.42 NP_863707.1 PMID: 11823852 best DB hits: BLAST: pir:A83071; hypothetical protein PA4591 [imported] - Pseudomonas; E=0.044 swissprot:P50533; XCPE_XENLA CHROMOSOME ASSEMBLY PROTEIN XCAP-E; E=0.26 gb:AAF73831.1; AF183959_2 (AF183959) periplasmic linker protein; E=0.62 COG: PA4591; COG0845 Membrane-fusion protein; E=0.004 NP_863709.1 PMID: 8760916 best DB hits: BLAST: embl:CAC18240.1; (AL451018) conserved hypothetical protein; E=2e-12 ddbj:BAB10478.1; (AB016888) gene_id:MDH9.6~similar to unknown; E=2e-12 embl:CAB92825.1; (AL356892) hypothetical protein [Streptomyces; E=6e-05 NP_863710.1 best DB hits: PFAM: PF00975; Thioesterase domain; E=0.51 PF00561; alpha/beta hydrolase fold; E=0.084 NP_863711.1 PMID: 8760916 best DB hits: BLAST: pir:F83157; hypothetical protein PA3910 [imported] - Pseudomonas; E=6e-05 ddbj:BAA06483.1; (D30808) unknown [Bacillus subtilis]; E=1e-04 swissprot:P42251; PPBD_BACSU ALKALINE PHOSPHATASE D PRECURSOR; E=1e-04 NP_863714.1 PMID: 9679194 PMID: 2546769 best DB hits: BLAST: pir:E75218; lsu ribosomal protein l37ae (rpl37ae) PAB7067 -; E=0.14 swissprot:O74106; R37A_PYRHO 50S RIBOSOMAL PROTEIN L37AE -----; E=0.30 NP_863716.1 PMID: 2691504 best DB hits: BLAST: pir:H75007; probable acylaminoacyl-peptidase (EC 3.4.19.1) PAB1300; E=6e-18 pir:G82543; conserved hypothetical protein XF2551 [imported] - Xylella; E=1e-16 pir:C71137; hypothetical protein PH0863 - Pyrococcus horikoshii; E=7e-16 COG: PAB1300; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; E=5e-19 VNG2302G; COG1506 Dipeptidyl; E=2e-08 APE1832; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; E=3e-08 PFAM: PF01748; Domain of unknown function DUF3; E=0.37 PF00326; Prolyl oligopeptidase; E=0.042 NP_863718.1 PMID: 9389475 PMID: 7548211 best DB hits: BLAST: gb:AAB89309.1; (AE000969) cysteine proteinase, ; E=8e-04 gb:AAG54838.1; AE005229_1 (AE005229) RTX family exoprotein; E=0.19 gb:AAD56325.1; AC009326_12 (AC009326) unknown protein [Arabidopsis; E=0.84 NP_863719.1 PMID: 8921874 best DB hits: BLAST: pir:A58519; hypothetical 345 protein - Streptomyces coelicolor; E=0.14 pir:H69064; serinethreonine protein kinase related protein -; E=0.20 gb:AAG31169.1; (AF314961) unknown [Salmonella typhimurium]; E=0.64 PFAM: PF01011; PQQ enzyme repeat; E=0.2 NP_863720.1 PMID: 8244397 PMID: 8325651 best DB hits: BLAST: gb:AAA16877.1; (L13329) iduronate-2-sulfatase [Homo sapiens]; E=3e-58 gb:AAB33747.1; iduronate-2-sulfatase, IDS {EC 3.1.6.13} [human,; E=1e-57 gb:AAA37880.1; (L07921) iduronate sulfatase [Mus musculus]; E=1e-54 COG: PA0031; COG3119 Arylsulfatase A and related enzymes; E=2e-36 BS_yqgS; COG1368 Phosphoglycerol transferase and related proteins,; E=1e-06 PAB0793; COG2194 Predicted membrane-associated, metal-dependent; E=1e-06 PFAM: PF00884; Sulfatase; E=1.7e-28 NP_863722.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_863726.1 PMID: 1738317 NP_863729.1 PMID: 1588814 best DB hits: BLAST: pir:C75333; general secretion pathway protein E - Deinococcus; E=1e-44 swissprot:P37093; GSPE_VIBCH GENERAL SECRETION PATHWAY PROTEIN E; E=6e-44 pir:C83313; probable type II secretion protein PA2677 [imported] -; E=3e-43 COG: DR1964; COG2804 Predicted ATPases involved in pili biogenesis, PilB; E=1e-45 PFAM: PF00437; Bacterial type II secretion s; E=5.5e-12 PF00448; SRP54-type protein, GTPase do; E=0.15 PF00437; Bacterial type II secretion s; E=5.5e-52 NP_863733.1 PMID: 10984043 best DB hits: BLAST: pir:G83056; conserved hypothetical protein PA4717 [imported] -; E=1e-59 pir:B65023; hypothetical protein b2475 - Escherichia coli (strain; E=4e-59 gb:AAK04057.1; (AE006233) unknown [Pasteurella multocida]; E=8e-57 COG: PA4717; COG2321 Predicted metalloprotease; E=1e-60 NP_863735.1 PMID: 10493123 best DB hits: BLAST: pir:H75528; conserved hypothetical protein - Deinococcus radiodurans; E=4e-06 pir:S76507; hypothetical protein - Synechocystis sp. (strain PCC; E=7e-06 pir:D81837; hypothetical protein NMA1464 [imported] - Neisseria; E=1e-05 COG: DR0358; COG0354 Predicted aminomethyltransferase related to GcvT; E=4e-07 NP_863737.1 best DB hits: BLAST: swissprot:P71584; PKNB_MYCTU SERINETHREONINE-PROTEIN; E=2e-31 pir:T36717; probable serinethreonine protein kinase - Streptomyces; E=5e-31 swissprot:P54744; PKNB_MYCLE SERINETHREONINE-PROTEIN; E=9e-31 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=3e-32 PFAM: PF00069; Protein kinase domain; E=6.9e-49 PF00515; TPR Domain; E=0.72 NP_863738.1 best DB hits: PFAM: PF00364; Biotin-requiring enzyme; E=0.031 PF00529; HlyD family secretion protein; E=0.78 NP_863739.1 best DB hits: BLAST: pir:T31342; ragD protein - Bradyrhizobium japonicum ----- embl:; E=1e-05 pir:B83186; probable RND efflux membrane fusion protein precursor; E=2e-04 gb:AAK03081.1; (AE006139) unknown [Pasteurella multocida]; E=0.001 COG: PA3677; COG0845 Membrane-fusion protein; E=2e-05 PA2836; COG1566 Multidrug resistance efflux pump; E=0.001 VC0165; COG0845 Membrane-fusion protein; E=0.002 PFAM: PF00364; Biotin-requiring enzyme; E=0.021 NP_863740.1 PMID: 8203018 best DB hits: BLAST: pir:C70415; cation efflux system (czcB-like) - Aquifex aeolicus; E=2e-10 pir:B82357; conserved hypothetical protein VC0165 [imported] -; E=3e-10 ddbj:BAA34299.1; (AB015853) MexX [Pseudomonas aeruginosa]; E=5e-08 COG: aq_1331; COG0845 Membrane-fusion protein; E=2e-11 emrA; COG1566 Multidrug resistance efflux pump; E=0.003 PA3402; COG0845 Membrane-fusion protein; E=0.003 PFAM: PF00364; Biotin-requiring enzyme; E=0.0052 PF00529; HlyD family secretion protein; E=6.1e-07 NP_863741.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins NP_863742.1 PMID: 9852029 best DB hits: BLAST: gb:AAD12177.1; (AF029405) outer membrane channel protein; E=0.001 gb:AAD30205.1; (AF094824) IbeB [Escherichia coli]; E=0.039 swissprot:Q51487; OPRM_PSEAE OUTER MEMBRANE PROTEIN OPRM PRECURSOR; E=0.049 COG: PA0427; COG1538 Outer membrane protein; E=0.005 PFAM: PF02321; Outer membrane efflux protein; E=0.0013 NP_863745.1 PMID: 6091915 best DB hits: BLAST: pir:S75200; fat protein - Synechocystis sp. (strain PCC 6803) -----; E=7e-24 ddbj:BAA88688.1; (AB011533) MEGF7 [Rattus norvegicus]; E=3e-18 ddbj:BAA32468.1; (AB011540) MEGF7 [Homo sapiens]; E=2e-17 COG: sll0656_1; COG3204 Uncharacterized BCR; E=5e-14 PFAM: PF00058; Low-density lipoprotein receptor; E=6.3e-06 PF00028; Cadherin domain; E=0.036 PF00801; PKD domain; E=0.073 NP_863746.1 PMID: 11406410 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=2e-69 pir:S75130; sensory transduction histidine kinase slr2098 -; E=4e-63 pir:E83443; probable sensorresponse regulator hybrid PA1611; E=8e-62 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=2e-53 PFAM: PF00989; PAS domain; E=5.9e-05 PF00512; His Kinase A (phosphoacceptor); E=4.2e-24 PF02518; Histidine kinase-, DNA gyrase B; E=4.1e-43 NP_863748.1 PMID: 7699720 best DB hits: BLAST: pir:G82211; response regulator VC1348 [imported] - Vibrio cholerae; E=4e-59 embl:CAB89843.1; (AJ251547) response regulator [Xanthomonas; E=2e-56 pir:S75132; sensory transduction system regulatory protein slr2100 -; E=1e-55 COG: VC1348_2; COG2206 HD-GYP domain; E=1e-42 PFAM: PF00072; Response regulator receiver doma; E=1.1e-29 PF01966; HD domain; E=0.003 NP_863749.1 best DB hits: BLAST: pir:F81675; conserved hypothetical protein TC0684 [imported] -; E=7e-30 pir:D72066; sam dependent methyltransferase - Chlamydophila; E=1e-27 pir:G71519; probable sam dependent methyltransferase - Chlamydia; E=3e-27 COG: CPn0531; COG1092 Predicted SAM-dependent methyltransferases; E=1e-28 NP_863751.1 best DB hits: BLAST: gb:AAB58155.1; (U82621) hypothetical protein [Shigella flexneri]; E=2e-33 gb:AAF09022.1; (AF139596) unknown [Shigella flexneri]; E=2e-33 gb:AAG55688.1; AE005307_6 (AE005307) unknown in IS600 [Escherichia; E=2e-33 COG: tra5_g4; COG2801 transposase; E=2e-27 PFAM: PF01527; Transposase; E=4.8e-13 PF00665; Integrase core domain; E=3e-39 NP_863753.1 PMID: 8041625 best DB hits: BLAST: gb:AAB07489.2; (U66426) transposase [Acidithiobacillus; E=1e-21 gb:AAF60967.1; AF188737_2 (AF188737) transposase [Escherichia; E=1e-20 pir:A47041; probable transposase - Alcaligenes eutrophus insertion; E=1e-09 PFAM: PF01610; Transposase; E=3.9e-09 NP_863754.1 PMID: 2824781 best DB hits: BLAST: gb:AAG58100.1; AE005527_3 (AE005527) unknown protein encoded by; E=0.002 gb:AAG53987.1; AF327445_1 (AF327445) transposase A; E=0.003 gb:AAF28119.1; AF153317_15 (AF153317) InsA [Shigella; E=0.007 COG: PA1937; COG2963 Transposase; E=0.004 PFAM: PF01381; Helix-turn-helix; E=0.53 PF01527; Transposase; E=6.1e-18 NP_863755.1 best DB hits: BLAST: gb:AAA88919.1; (U13013) ORFB [Leptospira interrogans]; E=3e-47 gb:AAA88916.1; (U13012) ORFB [Leptospira interrogans]; E=1e-46 gb:AAC05649.1; (AF038931) probable transposase-related protein; E=1e-45 COG: DRB0019.2; COG2801 transposase; E=1e-35 PFAM: PF00665; Integrase core domain; E=4.8e-40 NP_863756.1 PMID: 10601203 best DB hits: BLAST: gb:AAF60967.1; AF188737_2 (AF188737) transposase [Escherichia; E=6e-41 gb:AAB07489.2; (U66426) transposase [Acidithiobacillus; E=1e-30 pir:A47041; probable transposase - Alcaligenes eutrophus insertion; E=4e-26 PFAM: PF01610; Transposase; E=4.2e-28 NP_863759.1 PMID: 12024217 NP_863762.1 PMID: 12093901 best DB hits: BLAST: gb:AAD51069.1; AF175716_1 (AF175716) immunoreactive 52kD antigen; E=0.045 pir:S75812; hypothetical protein slr1270 - Synechocystis sp. (strain; E=0.17 PFAM: PF02321; Outer membrane efflux protein; E=0.18 NP_863765.1 best DB hits: BLAST: pir:T31342; ragD protein - Bradyrhizobium japonicum ----- embl:; E=2e-20 pir:A83330; probable RND efflux membrane fusion protein precursor; E=2e-12 pir:D83099; probable RND efflux membrane fusion protein precursor; E=2e-12 COG: PA2528; COG0845 Membrane-fusion protein; E=2e-13 PFAM: PF00364; Biotin-requiring enzyme; E=0.18 PF00529; HlyD family secretion protein; E=0.05 NP_863766.1 PMID: 8407802 best DB hits: BLAST: pir:S76433; cation efflux system protein czcA-2 - Synechocystis sp.; E=2e-86 ddbj:BAB07535.1; (AP001520) cation efflux system [Bacillus; E=1e-82 pir:F82263; probable multidrug resistance protein VC0914 [imported] -; E=1e-76 COG: sll0142; COG0841 Cation/multidrug efflux pump; E=1e-87 PFAM: PF00873; AcrB/AcrD/AcrF family; E=4.7e-88 NP_863769.1 PMID: 3017428 best DB hits: BLAST: pir:D82740; polyphosphate-selective porin O XF0975 [imported] -; E=2e-09 pir:A82820; porin O precursor XF0321 [imported] - Xylella fastidiosa; E=1e-04 swissprot:P05695; PORP_PSEAE PORIN P PRECURSOR (OUTER MEMBRANE; E=9e-04 NP_863771.1 PMID: 2303452 best DB hits: BLAST: gb:AAF49302.1; (AE003522) CG5584 gene product [Drosophila; E=3e-35 gb:AAF49287.1; (AE003522) CG7402 gene product [Drosophila; E=2e-34 gb:AAF30402.1; AF109924_1 (AF109924) sulfatase 1 precursor [Helix; E=1e-33 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=6e-28 BS_yfnI; COG1368 Phosphoglycerol transferase and related proteins,; E=3e-07 VNG0061C; COG3119 Arylsulfatase A and related enzymes; E=2e-04 PFAM: PF00884; Sulfatase; E=1.5e-40 NP_863772.1 PMID: 10809675 best DB hits: BLAST: gb:AAF72520.1; AF248951_1 (AF248951) mucin-desulfating sulfatase; E=1e-83 gb:AAG58881.1; AE005599_13 (AE005599) sulfatase; E=3e-31 swissprot:P31447; YIDJ_ECOLI SULFATASE YIDJ -----; E=5e-31 COG: yidJ; COG3119 Arylsulfatase A and related enzymes; E=5e-32 yejM; COG3083 Predicted hydrolase of alkaline phosphatase; E=5e-05 HI1246; COG1368 Phosphoglycerol transferase and related proteins,; E=3e-04 PFAM: PF00884; Sulfatase; E=1.8e-37 NP_863773.1 best DB hits: BLAST: swissprot:Q9WYP7; Y416_THEMA HYPOTHETICAL PROTEIN TM0416 -----; E=4e-26 swissprot:O50580; DT3E_PSECI D-TAGATOSE 3-EPIMERASE -----; E=6e-13 swissprot:P73599; YD04_SYNY3 HYPOTHETICAL 32.8 KDA PROTEIN SLL1304; E=2e-12 COG: TM0416; COG1082 Predicted endonucleases; E=4e-27 NP_863774.1 PMID: 3097517 best DB hits: BLAST: pir:A24420; notch protein - fruit fly (Drosophila melanogaster); E=0.11 swissprot:P07207; NOTC_DROME NEUROGENIC LOCUS NOTCH PROTEIN; E=0.11 embl:CAB37610.1; (AL035436) EG:140G11.1 [Drosophila melanogaster]; E=0.11 NP_863775.1 PMID: 2498333 best DB hits: BLAST: pir:T04984; hypothetical protein T16L1.160 - Arabidopsis thaliana; E=3e-59 gb:AAF54729.1; (AE003694) CG18547 gene product [Drosophila; E=3e-44 gb:AAF54731.1; (AE003694) CG3397 gene product [Drosophila; E=4e-36 COG: YMR041c; COG0667 Predicted oxidoreductases (related to aryl-alcohol; E=9e-22 TM1183; COG1453 Predicted oxidoreductases of the aldo/keto reductase; E=1e-14 BS_yccK; COG0667 Predicted oxidoreductases (related to aryl-alcohol; E=2e-14 PFAM: PF00248; Aldo/keto reductase; E=1.3e-14 NP_863777.1 PMID: 11930014 best DB hits: BLAST: pir:S44243; endosomal protein - human ----- embl: CAA55632.1; E=0.71 gb:AAA79121.1; (L40157) endosome-associated protein [Homo; E=0.73 swissprot:P02566; MYSB_CAEEL MYOSIN HEAVY CHAIN B (MHC B) -----; E=0.82 PFAM: PF01882; Protein of unknown function DUF58; E=0.11 NP_863780.1 PMID: 11743194 NP_863783.1 PMID: 10438791 best DB hits: BLAST: ddbj:BAB07649.1; (AP001520) BH3930~unknown conserved protein in; E=1e-170 swissprot:Q9Z8L0; Y328_CHLPN HYPOTHETICAL PROTEIN; E=1e-86 swissprot:O84087; Y085_CHLTR HYPOTHETICAL PROTEIN CT085 -----; E=3e-86 COG: BH3930; COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and; E=1e-171 PFAM: PF01977; Protein of unknown function UPF0096; E=6.7e-19 NP_863788.1 best DB hits: BLAST: pir:S74628; hypothetical protein slr1772 - Synechocystis sp. (strain; E=6e-17 pir:E82406; probable hydrolase VCA0877 [imported] - Vibrio cholerae; E=4e-13 gb:AAF67801.1; AF148138_1 (AF148138) bile salt hydrolase; E=0.028 COG: slr1772; COG3049 Penicillin V acylase and related amidases; E=5e-18 PFAM: PF02275; Choloylglycine hydrolase; E=0.47 NP_863790.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_863791.1 best DB hits: PFAM: PF02369; Bacterial Ig-like domain (group 1); E=0.48 NP_863793.1 PMID: 10986268 best DB hits: BLAST: swissprot:P03835; YI41_ECOLI INSERTION ELEMENT IS4 HYPOTHETICAL; E=0.002 gb:AAC72261.1; (U91581) transposase [Lactococcus lactis; E=0.008 gb:AAF27554.1; (AF179847) transposase [Lactococcus; E=0.008 COG: yi41; COG3385 Predicted transposase; E=2e-04 PFAM: PF01609; Transposase (IS4 family); E=0.024 NP_863795.1 PMID: 2991272 best DB hits: BLAST: swissprot:P56455; SYH_HELPY HISTIDYL-TRNA SYNTHETASE; E=5e-81 swissprot:Q9ZK27; SYH_HELPJ HISTIDYL-TRNA SYNTHETASE; E=1e-79 swissprot:O83647; SYH_TREPA HISTIDYL-TRNA SYNTHETASE; E=1e-73 COG: HP1190; COG0124 Histidyl-tRNA synthetase; E=5e-82 PFAM: PF00587; tRNA synthetase class II (G, H,; E=3.3e-08 NP_863797.1 PMID: 7868604 best DB hits: BLAST: gb:AAG20130.1; (AE005091) formyltetrahydrofolate deformylase; E=5e-24 swissprot:Q55135; PURU_SYNY3 FORMYLTETRAHYDROFOLATE DEFORMYLASE; E=3e-17 pir:C82633; formyltetrahydrofolate deformylase XF1831 [imported] -; E=2e-15 COG: VNG1946G; COG0788 Formyltetrahydrofolate hydrolase; E=5e-25 TM1248; COG0299 Folate-dependent phosphoribosylglycinamide; E=2e-07 Rv2964; COG0788 Formyltetrahydrofolate hydrolase; E=8e-07 PFAM: PF00551; Formyl transferase; E=1.4e-10 NP_863801.1 PMID: 11679669 best DB hits: BLAST: swissprot:P49225; RS21_MYXXA 30S RIBOSOMAL PROTEIN S21 -----; E=0.78 PFAM: PF01165; Ribosomal protein S21; E=2.9e-10 NP_863802.1 best DB hits: BLAST: pir:H75286; hypothetical protein - Deinococcus radiodurans (strain; E=5e-11 COG: DR2326; COG2314 Predicted membrane protein; E=1e-11 NP_863806.1 best DB hits: BLAST: embl:CAB94634.1; (AL359215) secreted glycosyl hydrolase.; E=7e-08 pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=1e-07 embl:CAB45032.1; (AL078635) large multi-functional; E=0.002 NP_863810.1 best DB hits: BLAST: pir:S74476; ABC-type transport protein slr1113 - Synechocystis sp.; E=5e-49 pir:H71008; probable ATP-binding transport protein - Pyrococcus; E=8e-43 pir:S76626; ABC-type transport protein sll0489 - Synechocystis sp.; E=1e-42 COG: slr1113; COG1131 ABC-type multidrug transport system, ATPase; E=5e-50 yadG; COG1131 ABC-type multidrug transport system, ATPase component; E=1e-34 BH1054_2; COG0842 Permease component of an ABC-transporter; E=1e-34 PFAM: PF02223; Thymidylate kinase; E=0.064 PF00005; ABC transporter; E=2.4e-45 NP_863812.1 PMID: 10206714 best DB hits: BLAST: gb:AAA83440.1; (U29483) GroES-like chaperonin [Thermus aquaticus]; E=5e-04 swissprot:P56970; CH10_CAMJE 10 KDA CHAPERONIN (PROTEIN CPN10); E=6e-04 swissprot:P26879; CH10_LEGPN 10 KD CHAPERONIN (PROTEIN CPN10); E=7e-04 COG: Cj1220; COG0234 Co-chaperonin GroES (HSP10); E=6e-05 PFAM: PF00166; Chaperonin 10 Kd subunit; E=4.5e-05 NP_863813.1 best DB hits: BLAST: ddbj:BAB03825.1; (AP001507) BH0106~unknown conserved protein; E=2e-52 swissprot:Q06754; YACL_BACSU HYPOTHETICAL 40.9 KD PROTEIN IN; E=4e-51 swissprot:Q48762; YOR6_LISMO HYPOTHETICAL 39.5 KD PROTEIN (ORF6); E=8e-51 COG: BH0106; COG1855 ATPases of the PilT family; E=2e-53 PFAM: PF01850; PIN domain; E=0.11 NP_863815.1 PMID: 2826481 best DB hits: BLAST: gb:AAD53927.1; AF179611_11 (AF179611) dGTP triphosphohydrolase; E=5e-51 swissprot:Q9ZE82; DGTP_RICPR DEOXYGUANOSINETRIPHOSPHATE; E=3e-48 pir:F75449; dGTP triphosphohydrolase-related protein - Deinococcus; E=2e-47 COG: RP064; COG0232 dGTP triphosphohydrolase; E=3e-49 MJ1154; COG1078 HD superfamily phosphohydrolases; E=4e-04 PFAM: PF01966; HD domain; E=2.7e-10 NP_863819.1 best DB hits: BLAST: pir:G75191; dolichol-phosphate mannosyltransferase PAB2307 -; E=3e-21 pir:H71223; probable dolichol-phosphate mannosyltransferase -; E=3e-18 gb:AAC98797.1; (AF007875) dolichol monophosphate mannose synthase; E=5e-13 COG: PAB2307_1; COG0463 Glycosyltransferases involved in cell wall; E=3e-22 yfbF; COG0463 Glycosyltransferases involved in cell wall biogenesis; E=5e-12 MTH136; COG0463 Glycosyltransferases involved in cell wall; E=3e-11 PFAM: PF00535; Glycosyl transferase; E=1.1e-23 NP_863820.1 best DB hits: BLAST: gb:AAG20016.1; (AE005082) Vng1795c [Halobacterium sp. NRC-1]; E=2e-30 gb:AAB89520.1; (AE000983) A. fulgidus predicted coding region; E=2e-21 embl:CAB56041.1; (Y15115) zeta-carotene desaturase [Anabaena; E=4e-05 COG: VNG1795C; COG1232 Protoporphyrinogen oxidase; E=2e-31 slr0940; COG3349 Uncharacterized ACR; E=1e-04 PFAM: PF02254; KTN NAD-binding domain; E=0.00031 PF00070; Pyridine nucleotide-disulphide oxi; E=0.00077 PF01266; D-amino acid oxidase; E=0.11 NP_863821.1 PMID: 11080634 PMID: 8020507 best DB hits: BLAST: gb:AAG45171.1; AF317883_3 (AF317883) molybdopterin cofactor; E=3e-05 pir:D70864; hypothetical protein Rv2453c - Mycobacterium; E=0.80 NP_863822.1 PMID: 9515915 PMID: 3045084 best DB hits: BLAST: gb:AAG55200.1; AE005263_9 (AE005263) molybdopterin biosynthesis; E=7e-40 swissprot:P12281; MOEA_ECOLI MOLYBDOPTERIN BIOSYNTHESIS MOEA; E=3e-39 swissprot:Q44243; MOEA_ANASP MOLYBDOPTERIN BIOSYNTHESIS MOEA; E=4e-34 COG: moeA; COG0303 Molybdopterin biosynthesis enzyme; E=2e-40 PFAM: PF00994; Molybdenum cofactor biosynthesi; E=4.4e-76 NP_863824.1 best DB hits: BLAST: gb:AAK00343.1; AF329498_3 (AF329498) ammonium transporter AmtB; E=4e-82 gb:AAC38548.1; (AF005275) AmtB [Azospirillum brasilense]; E=3e-81 embl:CAA12410.1; (AJ225126) ammonium transporter, AmtB; E=4e-77 COG: PA5287; COG0004 Ammonia permeases; E=2e-76 PFAM: PF00909; Ammonium Transporter Family; E=1.5e-154 NP_863826.1 PMID: 1645840 best DB hits: BLAST: gb:AAK02818.1; (AE006110) HtrA [Pasteurella multocida]; E=0.003 swissprot:P45129; HTOA_HAEIN PROBABLE PERIPLASMIC SERINE PROTEASE; E=0.010 gb:AAC38202.1; (AF018151) HtrA [Haemophilus influenzae]; E=0.010 COG: HI1259; COG0265 Trypsin-like serine proteases, typically; E=0.001 degQ; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=0.009 PFAM: PF00595; PDZ domain (Also known as DHR o; E=5e-11 NP_863827.1 PMID: 2197596 PMID: 9846876 best DB hits: BLAST: gb:AAG58092.1; AE005526_5 (AE005526) adenine glycosylase; G.C -->; E=2e-57 swissprot:P17802; MUTY_ECOLI AG-SPECIFIC ADENINE GLYCOSYLASE; E=3e-57 gb:AAK04939.1; AE006318_2 (AE006318) AG-specific adenine; E=2e-55 COG: mutY; COG1194 A/G-specific DNA glycosylase; E=3e-58 aq_282; COG0177 Predicted EndoIII-related endonuclease; E=2e-16 MTH496; COG1194 A/G-specific DNA glycosylase; E=3e-15 PFAM: PF00730; HhH-GPD superfamily base exci; E=4.5e-42 NP_863829.1 best DB hits: BLAST: pir:B75584; cytochrome-c peroxidase (EC 1.11.1.5) DRA0301; E=2e-45 swissprot:Q49128; MAUG_METEX METHYLAMINE UTILIZATION PROTEIN MAUG; E=9e-45 swissprot:Q50426; MAUG_METFL METHYLAMINE UTILIZATION PROTEIN MAUG; E=2e-42 COG: DRA0301; COG1858 Cytochrome c peroxidase; E=2e-46 NP_863831.1 PMID: 2644282 PMID: 36376 best DB hits: BLAST: swissprot:P16468; MAOX_BACST NAD-DEPENDENT MALIC ENZYME (NAD-ME); E=1e-141 embl:CAB72197.1; (AL138851) malate oxidoreductase; E=1e-135 pir:S74511; malic enzyme - Synechocystis sp. (strain PCC 6803); E=1e-118 COG: slr0721; COG0281 Malic enzyme; E=1e-119 PFAM: PF01842; ACT domain; E=7.3e-05 PF00390; Malic enzyme; E=0.034 PF01488; Shikimate / quinate 5-dehydrogen; E=0.17 NP_863832.1 PMID: 8663186 best DB hits: BLAST: pir:G75255; probable magnesium protoporphyrin chelatase -; E=3e-84 pir:D70717; hypothetical protein Rv0958 - Mycobacterium tuberculosis; E=4e-69 gb:AAF82071.1; AF232750_3 (AF232750) Rv0958-like protein; E=2e-25 COG: DR2594; COG1239 Mg-chelatase subunit ChlI; E=2e-85 PFAM: PF01078; Magnesium chelatase, subunit Chl; E=1.1e-12 NP_863834.1 PMID: 1339356 PMID: 7768883 best DB hits: BLAST: embl:CAB45522.1; (AJ007046) [acyl-carrier protein]; E=9e-58 pir:T00580; probable [acyl-carrier-protein] S-malonyltransferase (EC; E=1e-57 gb:AAG43518.1; AF210698_1 (AF210698) malonyl-CoA:ACP transacylase; E=1e-56 COG: HI0156; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=6e-52 PFAM: PF00698; Acyl transferase domain; E=3.2e-16 NP_863835.1 PMID: 1556094 PMID: 8759840 best DB hits: BLAST: ddbj:BAB06210.1; (AP001515) 3-oxoacyl-(acyl-carrier protein); E=3e-52 swissprot:Q9X248; FABG_THEMA 3-OXOACYL-[ACYL-CARRIER PROTEIN]; E=7e-50 pir:G75333; 3-oxoacyl-acyl carrier protein reductase - Deinococcus; E=1e-49 COG: BH2491; COG1028 Dehydrogenases with different specificities (related; E=3e-53 BS_fabG; COG1028 Dehydrogenases with different specificities; E=1e-49 RP762; COG1028 Dehydrogenases with different specificities (related; E=7e-48 PFAM: PF00106; short chain dehydrogenase; E=3.2e-73 PF00678; Short chain dehydrogenase/reduct; E=9.9e-16 NP_863836.1 PMID: 1556094 PMID: 2091027 best DB hits: BLAST: gb:AAC63956.1; (AF038925) acyl carrier protein precursor; E=2e-16 pir:E82128; acyl carrier protein VC2020 [imported] - Vibrio cholerae; E=1e-13 pir:F75333; acyl carrier protein DR1942 [similarity] - Deinococcus; E=3e-13 COG: VC2020; COG0236 Acyl carrier protein; E=1e-14 PFAM: PF00550; Phosphopantetheine attachment site; E=2.2e-19 NP_863838.1 PMID: 7972002 best DB hits: BLAST: pir:G69842; 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); E=1e-105 pir:T12022; 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); E=1e-103 pir:S77464; 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); E=1e-103 COG: BS_yjaY; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; E=1e-106 PFAM: PF00896; Phosphorylase 2; E=0.27 PF00108; Thiolase, N-terminal domain; E=0.071 PF00109; Beta-ketoacyl synthase, N-ter; E=1e-78 NP_863839.1 PMID: 9741082 best DB hits: BLAST: embl:CAA05049.1; (AJ001848) TDIR [Thauera aromatica]; E=8e-28 gb:AAD12186.1; (U57900) DNA binding protein TutB1; E=1e-24 gb:AAK00179.1; AF222754_7 (AF222754) probable nodulation protein; E=4e-24 COG: PA4196; COG2197 Response regulators consisting of a CheY-like; E=3e-22 PA5511; COG2204 AAA superfamily ATPases with N-terminal receiver; E=1e-15 uvrY; COG2197 Response regulators consisting of a CheY-like receiver; E=2e-10 PFAM: PF00072; Response regulator receiver doma; E=5.1e-23 PF00196; Bacterial regulatory proteins, l; E=5.1e-10 NP_863840.1 PMID: 9925549 best DB hits: BLAST: ddbj:BAA34299.1; (AB015853) MexX [Pseudomonas aeruginosa]; E=5e-05 pir:E82263; conserved hypothetical protein VC0913 [imported] -; E=5e-05 pir:A83342; conserved hypothetical protein PA2430 [imported] -; E=5e-05 COG: VC0913; COG0845 Membrane-fusion protein; E=4e-06 PA2430; COG1566 Multidrug resistance efflux pump; E=5e-06 PA2019; COG0845 Membrane-fusion protein; E=1e-05 PFAM: PF00364; Biotin-requiring enzyme; E=0.46 PF00529; HlyD family secretion protein; E=0.0014 NP_863843.1 PMID: 6207018 PMID: 1709162 best DB hits: BLAST: pir:B70464; probable orotate phosphoribosyltransferase (EC 2.4.2.10); E=3e-31 pir:S76099; probable orotate phosphoribosyltransferase (EC 2.4.2.10); E=7e-27 pir:A70834; probable orotate phosphoribosyltransferase (EC 2.4.2.10); E=1e-26 COG: aq_1907; COG0461 Orotate phosphoribosyltransferase; E=3e-32 MJ1655; COG0503 Adenine/guanine phosphoribosyltransferases and; E=3e-05 HI0272; COG0461 Orotate phosphoribosyltransferase; E=3e-05 PFAM: PF00156; Phosphoribosyl transferase domai; E=7e-27 NP_863845.1 PMID: 8490659 best DB hits: BLAST: gb:AAD11750.1; (AF067954) cation transporting P-type; E=0.0 swissprot:Q9X5V3; ATCU_RHILV COPPER-TRANSPORTING ATPASE -----; E=0.0 embl:CAC07984.1; (AJ278983) CopF Cu-ATPase [Ralstonia; E=1e-180 COG: sll1920; COG2217 Cation transport ATPases; E=1e-150 PFAM: PF00122; E1-E2 ATPase; E=1.8e-93 PF00702; haloacid dehalogenase-like hyd; E=1.8e-32 NP_863849.1 best DB hits: BLAST: swissprot:P72699; Y230_SYNY3 HYPOTHETICAL 13.3 KD PROTEIN SLL0230; E=9e-37 prf:2118405D; ORF YBL0105 [Saccharomyces cerevisiae]; E=8e-16 pir:D75018; hypothetical protein PAB1240 - Pyrococcus abyssi; E=1e-12 COG: sll0230; COG0011 Uncharacterized ACR; E=9e-38 PFAM: PF01910; Protein of unknown function DUF77; E=3.4e-51 NP_863851.1 PMID: 8703024 best DB hits: BLAST: swissprot:O08437; FKBA_AERHY FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS; E=4e-22 pir:H83238; probable peptidyl-prolyl cis-trans isomerase, FkbP-type; E=2e-21 pir:D82331; peptidyl-prolyl cis-trans isomerase, FKBP-type VC0354; E=2e-21 COG: PA3262; COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1; E=2e-22 PFAM: PF00254; FKBP-type peptidyl-prolyl cis-trans; E=1.3e-29 NP_863852.1 PMID: 8572946 best DB hits: BLAST: gb:AAA96808.1; (L41843) ORF910; [Bacteriophage mv4]; E=0.002 NP_863853.1 PMID: 11157235 PMID: 10966413 best DB hits: BLAST: ddbj:BAB21059.1; (AB037178) xanthan lyase [Bacillus sp. GL1]; E=3e-13 gb:AAG24953.1; AF242413_1 (AF242413) XalA [Paenibacillus; E=2e-10 gb:AAG42262.1; AF318176_1 (AF318176) xanthan lyase XalB; E=0.050 PFAM: PF00070; Pyridine nucleotide-disulphide; E=0.00077 NP_863854.1 PMID: 791660310884354 best DB hits: BLAST: pir:S75307; ferredoxin [2Fe-2S] sll1584 [similarity] - Synechocystis; E=2e-29 swissprot:O66511; FER2_AQUAE FERREDOXIN, 2FE-2S (AAFD4) -----; E=3e-08 pdb:1F37; A Chain A, Structure Of A Thioredoxin-Like [2fe-2s]; E=3e-08 COG: sll1584; COG3411 Uncharacterized protein; E=2e-30 TM0010_1; COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51; E=8e-09 aq_108a; COG3411 Uncharacterized protein; E=8e-09 NP_863855.1 PMID: 2303452 best DB hits: BLAST: gb:AAF49287.1; (AE003522) CG7402 gene product [Drosophila; E=4e-41 gb:AAF30402.1; AF109924_1 (AF109924) sulfatase 1 precursor [Helix; E=2e-39 swissprot:P15848; ARSB_HUMAN ARYLSULFATASE B PRECURSOR (ASB); E=6e-38 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=2e-36 PFAM: PF00884; Sulfatase; E=1.4e-48 NP_863856.1 PMID: 7910580 PMID: 2303452 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=2e-32 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=5e-32 gb:AAA51779.1; (M32373) arylsulfatase B precursor [Homo sapiens]; E=7e-32 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=4e-21 PFAM: PF00884; Sulfatase; E=5.6e-75 NP_863859.1 PMID: 9045837 PMID: 9139683 best DB hits: BLAST: swissprot:O86169; MENH_BACST 2-HEPTAPRENYL-1,4-NAPHTHOQUINONE; E=1e-11 prf:2104259J; ORF 5 [Streptomyces peucetius]; E=3e-09 gb:AAG54506.1; AE005196_4 (AE005196) unknown [Escherichia coli; E=7e-08 COG: DR0026; COG0500 SAM-dependent methyltransferases; E=2e-07 PA5063; COG2226 Methylase involved in ubiquinone/menaquinone; E=3e-07 aq_262; COG0500 SAM-dependent methyltransferases; E=1e-05 PFAM: PF01209; ubiE/COQ5 methyltransferase f; E=0.0065 NP_863860.1 PMID: 11214968 NP_863861.1 PMID: 10984043 best DB hits: BLAST: pir:G83242; hypothetical protein PA3219 [imported] - Pseudomonas; E=9e-45 pir:D83421; conserved hypothetical protein PA1792 [imported] -; E=0.024 pir:C82150; conserved hypothetical protein VC1850 [imported] -; E=0.030 COG: PA3219; COG2908 Uncharacterized BCR; E=8e-46 NP_863863.1 PMID: 11259647 NP_863867.1 PMID: 9495773 PMID: 8437564 best DB hits: BLAST: swissprot:P73450; NRTC_SYNY3 NITRATE TRANSPORT ATP-BINDING PROTEIN; E=3e-61 gb:AAB86900.1; (L27431) nitrate transporter component; NasF; E=2e-51 pir:S75959; nitrate transport protein C-1 - Synechocystis sp.; E=6e-49 COG: sll1452_2; COG0715 ABC-type nitrate/sulfonate/taurine/bicarbonate; E=3e-62 NP_863868.1 PMID: 8437564 best DB hits: BLAST: ddbj:BAA21794.1; (AB000100) intrinsic membrane protein; E=6e-30 swissprot:P38044; NRTB_SYNP7 NITRATE TRANSPORT PERMEase; E=4e-29 gb:AAB86903.1; (L27431) nitrate transporter component; NasE; E=1e-27 COG: sll1451; COG0600 ABC-type nitrate/sulfonate/taurine/bicarbonate; E=9e-28 BB0145; COG1174 ABC-type proline/glycine betaine transport systems,; E=1e-05 PFAM: PF00528; Binding-protein-dependent transpor; E=8.5e-12 NP_863869.1 PMID: 8437564 best DB hits: BLAST: pir:S58789; ATP binding protein nrtC - oscillatoriacean; E=4e-60 swissprot:P38045; NRTC_SYNP7 NITRATE TRANSPORT ATP-BINDING PROTEIN; E=2e-59 pir:S75959; nitrate transport protein C-1 - Synechocystis sp.; E=9e-59 COG: sll1453; COG1116 ABC-type nitrate/sulfonate/taurine/bicarbonate; E=6e-59 NMB0610; COG1130 ABC-type sugar/spermidine/putrescine transport; E=1e-35 PA2308; COG1116 ABC-type nitrate/sulfonate/taurine/bicarbonate; E=2e-35 PFAM: PF00485; Phosphoribulokinase / Uridine kinase; E=0.18 PF00005; ABC transporter; E=2.2e-56 NP_863870.1 PMID: 8437564 best DB hits: BLAST: pir:S75959; nitrate transport protein C-1 - Synechocystis sp.; E=1e-61 pir:S58789; ATP binding protein nrtC - oscillatoriacean; E=1e-61 pir:S77386; nitrate transport protein D-3 - Synechocystis sp.; E=2e-61 COG: sll1453; COG1116 ABC-type nitrate/sulfonate/taurine/bicarbonate; E=2e-62 PA3254; COG1130 ABC-type sugar/spermidine/putrescine transport; E=4e-29 PA2329; COG1116 ABC-type nitrate/sulfonate/taurine/bicarbonate; E=4e-28 PFAM: PF00005; ABC transporter; E=3.5e-57 NP_863871.1 best DB hits: PFAM: PF01590; GAF domain; E=0.89 NP_863872.1 PMID: 8635740 PMID: 1834669 best DB hits: BLAST: embl:CAC23825.1; (AL512979) molybdopterin oxidoreductase, iron; E=5e-26 gb:AAD37318.1; AF135170_9 (AF135170) dimethyl sulfoxide reductase; E=2e-25 swissprot:P18776; DMSB_ECOLI ANAEROBIC DIMETHYL SULFOXIDE; E=5e-25 COG: dmsB; COG0437 Fe-S-cluster-containing hydrogenase components 1; E=4e-26 TM0396; COG1142 Fe-S-cluster-containing hydrogenase components 2; E=5e-16 aq_067; COG0437 Fe-S-cluster-containing hydrogenase components 1; E=6e-16 PFAM: PF00037; 4Fe-4S binding domain; E=0.026 NP_863873.1 PMID: 7868621 best DB hits: BLAST: ddbj:BAA74791.1; (AB017192) nitrate reductase catalytic subunit; E=1e-156 gb:AAB40292.1; (L49163) narB [Nostoc sp. PCC 7120]; E=1e-105 swissprot:P73448; NARB_SYNY3 NITRATE REDUCTASE ----- pir:; E=1e-105 COG: sll1454; COG0243 Anaerobic dehydrogenases, typically; E=1e-106 MTH1552; COG3383 Uncharacterized anaerobic dehydrogenase; E=5e-74 aq_217; COG0243 Anaerobic dehydrogenases, typically; E=4e-69 PFAM: PF00384; Molybdopterin oxidoreductases; E=1.2e-89 PF01568; Molydopterin dinucleotide bin; E=5.9e-29 NP_863874.1 ferredoxin-dependent assimilatory nitrite reductase NP_863875.1 Catalyzes the reduction of sulfite to sulfide, an essential step in the anaerobic sulfate-respiration pathway NP_863879.1 PMID: 9915792 best DB hits: BLAST: swissprot:Q9I778; KPTA_PSEAE PROBABLE RNA 2'-PHOSPHOTRANSFERASE; E=3e-10 pir:S56556; hypothetical 24.6K protein (iadA-mcrD intergenic region); E=6e-09 swissprot:P39380; KPTA_ECOLI RNA 2'-PHOSPHOTRANSFERASE; E=6e-09 COG: PA0054; COG1859 Uncharacterized ACR; E=3e-11 PFAM: PF01885; Domain of unknown function DUF60; E=6.1e-16 NP_863880.1 PMID: 8936303 best DB hits: BLAST: pir:T18551; saframycin Mx1 synthetase B - Myxococcus xanthus -----; E=1e-112 pir:T34918; polyketide synthase - Streptomyces coelicolor -----; E=1e-102 pir:H83343; probable non-ribosomal peptide synthetase PA2424; E=1e-101 COG: PA2424_1; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid; E=1e-102 Rv1529; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases; E=7e-83 Ta1189; COG0156 7-keto-8-aminopelargonate synthetase and related; E=6e-62 PFAM: PF00501; AMP-binding enzyme; E=2.2e-08 PF00550; Phosphopantetheine attachment si; E=1.3e-09 PF02490; Aminolevulinic acid synthase dom; E=0.0015 NP_863882.1 PMID: 10094695 best DB hits: BLAST: gb:AAG38844.1; (AY010120) reductasehalogenase; E=9e-35 pir:T30590; alkylhalidase homolog - Amycolatopsis orientalis -----; E=2e-29 pir:T17419; probable alkylhalidase (EC 3.8.1.1) pltA - Pseudomonas; E=7e-29 COG: aq_104; COG0644 Dehydrogenases (flavoproteins); E=2e-07 PFAM: PF01134; Glucose inhibited division prot; E=0.14 PF02254; KTN NAD-binding domain; E=0.15 PF01494; FAD binding domain; E=0.00011 NP_863883.1 PMID: 7826004 best DB hits: BLAST: swissprot:P77475; YQAB_ECOLI HYPOTHETICAL 20.8 KDA PROTEIN IN; E=7e-26 gb:AAG57799.1; AE005497_10 (AE005497) phosphatase; E=8e-26 pir:D82431; CbbY family protein VCA0662 [imported] - Vibrio cholerae; E=1e-25 COG: yqaB; COG0637 Predicted phosphatase/phosphohexomutase; E=7e-27 DR0729; COG0546 Predicted phosphatases; E=1e-09 yieH; COG0637 Predicted phosphatase/phosphohexomutase; E=9e-09 PFAM: PF00702; haloacid dehalogenase-like hydro; E=8.5e-24 NP_863884.1 best DB hits: BLAST: ddbj:BAB09011.1; (AB012239) gene_id:K11J9.20~unknown protein; E=0.11 pir:T35304; probable peptidase - Streptomyces coelicolor -----; E=0.19 ddbj:BAA76932.1; (AB024705) fls485 [Homo sapiens]; E=0.83 NP_863888.1 PMID: 2549364 best DB hits: BLAST: swissprot:P80860; G6PI_BACSU GLUCOSE-6-PHOSPHATE ISOMERASE (GPI); E=6e-53 ddbj:BAB07062.1; (AP001518) glucose-6-phosphate isomerase; E=4e-52 pir:S15937; glucose-6-phosphate isomerase (EC 5.3.1.9) - Bacillus; E=5e-52 COG: BS_pgi; COG0166 Glucose-6-phosphate isomerase; E=6e-54 PFAM: PF00342; Phosphoglucose isomerase; E=6.8e-31 NP_863890.1 best DB hits: PFAM: PF01423; Sm protein; E=0.11 NP_863891.1 PMID: 10809675 best DB hits: BLAST: gb:AAF72520.1; AF248951_1 (AF248951) mucin-desulfating sulfatase; E=4e-37 pir:F83354; probable sulfatase PA2333 [imported] - Pseudomonas; E=2e-19 gb:AAF55296.1; (AE003712) Sulf1 gene product [Drosophila; E=2e-18 COG: PA2333; COG3119 Arylsulfatase A and related enzymes; E=1e-20 yejM; COG3083 Predicted hydrolase of alkaline phosphatase; E=7e-04 BS_yfnI; COG1368 Phosphoglycerol transferase and related proteins,; E=0.001 PFAM: PF00325; Bacterial regulatory proteins, crp; E=0.29 PF00884; Sulfatase; E=4.3e-51 NP_863892.1 PMID: 7910580 best DB hits: BLAST: swissprot:P50428; ARSA_MOUSE ARYLSULFATASE A PRECURSOR (ASA); E=2e-38 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=7e-38 gb:AAC27821.1; (AF013158) arylsulfatase [Heliocidaris; E=1e-37 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=2e-25 yejM; COG3083 Predicted hydrolase of alkaline phosphatase; E=1e-05 Rv0296c; COG3119 Arylsulfatase A and related enzymes; E=3e-05 PFAM: PF00884; Sulfatase; E=1.5e-38 PF00391; PEP-utilizing enzyme, mobile do; E=0.65 PF00884; Sulfatase; E=4.6e-44 NP_863893.1 PMID: 9061023 best DB hits: BLAST: swissprot:P94326; TRPD_BRAJA ANTHRANILATE; E=4e-55 ddbj:BAB05379.1; (AP001512) anthranilate; E=3e-53 swissprot:O66576; TRPD_AQUAE ANTHRANILATE; E=1e-50 COG: BH1660; COG0547 Anthranilate phosphoribosyltransferase; E=2e-54 PFAM: PF02885; Glycosyl transferase,; E=7.5e-13 PF00591; Glycosyl transferase,; E=1.6e-96 NP_863895.1 PMID: 11997336 NP_863896.1 PMID: 8634238 best DB hits: BLAST: pdb:1EZR; A Chain A, Crystal Structure Of Nucleoside Hydrolase; E=3e-32 swissprot:Q27546; IUNH_CRIFA INOSINE-URIDINE PREFERRING NUCLEOSIDE; E=2e-31 pdb:2MAS; A Chain A, Purine Nucleoside Hydrolase With A Transition; E=4e-31 COG: yeiK; COG1957 Inosine-uridine nucleoside N-ribohydrolase; E=3e-31 PFAM: PF01156; Inosine-uridine preferring nucle; E=1.9e-51 NP_863897.1 PMID: 1466286 best DB hits: BLAST: gb:AAG59144.1; AE005625_7 (AE005625) orf, hypothetical protein; E=0.15 pir:I78664; hypothetical 34.1K protein (katg-glda intergenic region); E=0.20 swissprot:P32667; YIJE_ECOLI HYPOTHETICAL 32.9 KD PROTEIN IN; E=0.24 PFAM: PF00892; Integral membrane protein DUF6; E=9.9e-10 NP_863898.1 PMID: 7768349 best DB hits: BLAST: swissprot:Q11053; PKNH_MYCTU PROBABLE SERINETHREONINE-PROTEIN; E=5e-14 pir:T42076; protein kinase homolog - Streptomyces coelicolor -----; E=2e-13 pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=4e-13 COG: Rv1266c; COG0515 Serine/threonine protein kinases; E=5e-15 PFAM: PF00069; Protein kinase domain; E=3.3e-32 NP_863899.1 PMID: 10747806 best DB hits: BLAST: gb:AAK02399.1; (AE006067) SuhB [Pasteurella multocida]; E=5e-35 ddbj:BAB06354.1; (AP001516) myo-inositol-1(or 4)-monophosphatase; E=2e-33 swissprot:P22783; SUHB_ECOLI EXTRAGENIC SUPPRESSOR PROTEIN SUHB; E=6e-33 COG: BH2635; COG0483 Archaeal fructose-1,6-bisphosphatase and related; E=2e-34 VC2722; COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS); E=4e-11 PFAM: PF00459; Inositol monophosphatase; E=8.5e-66 NP_863900.1 PMID: 10984043 best DB hits: BLAST: pir:A83440; conserved hypothetical protein PA1644 [imported] -; E=8e-29 pir:F75254; conserved hypothetical protein - Deinococcus radiodurans; E=3e-26 ddbj:BAB05997.1; (AP001515) BH2278~unknown conserved protein; E=1e-24 COG: PA1644; COG1853 Conserved protein/domain typically associated with; E=8e-30 NP_863906.1 best DB hits: PFAM: PF00589; Phage integrase; E=0.013 NP_863910.1 PMID: 8843436 best DB hits: BLAST: embl:CAC08270.1; (AL392146) ATP-binding protein; E=1e-37 NP_863912.1 PMID: 9266672 best DB hits: BLAST: swissprot:O15442; 239A_HUMAN ADULT BRAIN PROTEIN 239 (239AB); E=4e-19 gb:AAC51673.2; (U84894) 239AB [Homo sapiens]; E=4e-19 prf:2122285A; 239FB gene [Homo sapiens]; E=1e-17 COG: APE2283; COG2129 Predicted phosphoesterases, related to the Icc; E=4e-06 NP_863913.1 PMID: 9266672 best DB hits: BLAST: swissprot:O15442; 239A_HUMAN ADULT BRAIN PROTEIN 239 (239AB); E=0.014 gb:AAC51673.2; (U84894) 239AB [Homo sapiens]; E=0.014 ref:XP_013018.1; chromosome 22 open reading frame 1 [Homo; E=0.014 PFAM: PF01143; Uncharacterized phosphoesterase fami; E=0.00034 NP_863916.1 PMID: 7607524 best DB hits: BLAST: swissprot:P50196; MTE8_ECOLI MODIFICATION METHYLASE ECO47II; E=4e-04 swissprot:P45876; DCMR_METSP TRANSCRIPTIONAL REPRESSOR DCMR; E=0.002 pir:T36638; probable substrate binding protein - Streptomyces; E=0.031 NP_863917.1 PMID: 9679194 best DB hits: BLAST: pir:F71079; hypothetical protein PH0902 - Pyrococcus horikoshii; E=8e-08 pir:G75134; hypothetical protein PAB0589 - Pyrococcus abyssi (strain; E=3e-07 pir:G72734; hypothetical protein APE0415 - Aeropyrum pernix (strain; E=0.10 COG: PH0902; COG1483 Predicted ATPase of the AAA+ class; E=7e-09 NP_863919.1 PMID: 9389475 best DB hits: BLAST: ref:NP_071283.1; Predicted DNA methylase containing a Zn-ribbon; E=9e-14 pir:H72310; conserved hypothetical protein - Thermotoga maritima; E=4e-09 pir:A71080; hypothetical protein PH0905 - Pyrococcus horikoshii; E=8e-07 COG: AF2345+6+7; COG1743 Predicted DNA methylase containing a Zn-ribbon; E=8e-15 NP_863920.1 PMID: 8688087 best DB hits: BLAST: gb:AAC37104.1; (L77118) M. jannaschii predicted coding region; E=4e-04 gb:AAG45955.1; AF282921_1 (AF282921) RecF protein; E=0.005 embl:CAA71688.1; (Y10687) purine NTPase [Sulfolobus; E=0.047 COG: jhp0346; COG1106 Predicted ATPases; E=0.005 PFAM: PF02463; SMC domain N terminal domain; E=5.1e-06 NP_863922.1 PMID: 155284 best DB hits: BLAST: pir:T17395; probable DEAH ATP-dependent helicase - Dichelobacter; E=2e-14 gb:AAG20812.1; (AE005149) ATP-dependent RNA helicase; HepA; E=2e-14 pir:D71079; hypothetical protein PH0900 - Pyrococcus horikoshii; E=1e-11 COG: PH0900; COG0553 Superfamily II DNA/RNA helicases, SNF2 family; E=1e-12 MJ0669; COG0513 Superfamily II DNA and RNA helicases; E=8e-08 AF2350; COG0553 Superfamily II DNA/RNA helicases, SNF2 family; E=4e-07 PFAM: PF00176; SNF2 and others N-terminal domain; E=7.6e-06 PF00271; Helicase conserved C-terminal doma; E=1.1e-12 NP_863923.1 PMID: 11016950 best DB hits: BLAST: gb:AAG20152.1; (AE005093) Vng1977h [Halobacterium sp. NRC-1]; E=0.002 NP_863928.1 best DB hits: PFAM: PF00665; Integrase core domain; E=0.2 NP_863929.1 PMID: 7518087 best DB hits: BLAST: embl:CAB46576.1; (AJ132945) IS1329 transposase B [Yersinia; E=2e-09 embl:CAB61574.1; (AJ251581) transposase B [Yersinia; E=2e-09 prf:2113421B; transposase [Burkholderia cepacia]; E=4e-09 COG: DRB0019.2; COG2801 transposase; E=5e-12 PFAM: PF00665; Integrase core domain; E=5.4e-05 NP_863934.1 PMID: 8008069 best DB hits: BLAST: gb:AAA58486.1; (L34075) FKBP-rapamycin associated protein [Homo; E=0.21 prf:2014422A; FKBP-rapamycin-associated protein [Homo sapiens]; E=0.21 gb:AAC39933.1; (U88966) rapamycin associated protein FRAP2 [Homo; E=0.21 NP_863939.1 PMID: 8052622 best DB hits: BLAST: pir:E71368; probable RNA polymerase sigma-24 factor (rpoE) -; E=2e-05 gb:AAC45219.1; (U87308) extracytoplasmic function alternative; E=1e-04 pir:T45196; probable transcription initiation factor sigma factor; E=3e-04 COG: TP0092; COG1595 DNA-directed RNA polymerase specialized sigma; E=2e-06 Rv3286c; COG1191 DNA-directed RNA polymerase specialized sigma; E=0.005 Rv1189; COG1595 DNA-directed RNA polymerase specialized sigma; E=0.005 NP_863941.1 PMID: 11823852 NP_863942.1 best DB hits: BLAST: gb:AAD34246.1; AF084398_1 (AF084398) calmodulin mutant SYNCAM46; E=0.002 gb:AAD34433.1; AF084449_1 (AF084449) calmodulin mutant SYNCAM26; E=0.002 prf:1003191A; calmodulin [Oryctolagus cuniculus]; E=0.002 PFAM: PF00036; EF hand; E=0.034 PF00395; S-layer homology domain; E=0.44 NP_863943.1 best DB hits: BLAST: pir:B71126; hypothetical protein PH0776 - Pyrococcus horikoshii; E=9e-66 ddbj:BAB04450.1; (AP001509) BH0731~unknown conserved protein; E=1e-65 pir:C75037; methanol dehydrogenase regulatory protein (moxr-3); E=2e-64 COG: PH0776; COG0714 MoxR-like ATPases; E=8e-67 PFAM: PF01078; Magnesium chelatase, subunit C; E=1.2e-08 NP_863944.1 PMID: 9634230 best DB hits: BLAST: swissprot:P71761; YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480; E=7e-17 pir:G70121; conserved hypothetical protein BB0175 - Lyme disease; E=5e-12 pir:D83106; hypothetical protein PA4323 [imported] - Pseudomonas; E=2e-09 COG: Rv1480; COG1721 Uncharacterized ACR; E=7e-18 PFAM: PF01882; Protein of unknown function DU; E=1.3e-17 NP_863946.1 PMID: 11474104 NP_863947.1 PMID: 11403381 best DB hits: BLAST: embl:CAC28360.1; (AJ306290) myosin heavy chain [Toxocara canis]; E=0.054 gb:AAD29950.1; (AF111784) myosin heavy chain IIa [Homo sapiens]; E=0.19 NP_863954.1 best DB hits: BLAST: pir:S75232; hypothetical protein sll1830 - Synechocystis sp. (strain; E=8e-04 NP_863956.1 PMID: 8041620 best DB hits: BLAST: swissprot:P37390; XYLR_ECOLI XYLOSE OPERON REGULATORY PROTEIN; E=3e-49 ddbj:BAB03212.1; (AB046360) xylose operon regulatory; E=1e-42 swissprot:P45043; XYLR_HAEIN XYLOSE OPERON REGULATORY PROTEIN; E=3e-42 COG: xylR_1; COG1609 Transcriptional regulators; E=2e-27 xylR_2; COG2207 AraC-type DNA-binding domain-containing proteins; E=1e-15 BS_degA; COG1609 Transcriptional regulators; E=1e-08 PFAM: PF00532; Periplasmic binding proteins; E=0.085 PF00165; Bacterial regulatory helix-tu; E=2e-18 NP_863958.1 PMID: 8843436 best DB hits: BLAST: embl:CAB94634.1; (AL359215) secreted glycosyl hydrolase.; E=1e-09 pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=1e-04 embl:CAB55721.1; (AL117387) hypothetical protein SCF41.18; E=2e-04 PFAM: PF00034; Cytochrome c; E=0.0012 NP_863959.1 PMID: 2404942 best DB hits: BLAST: pir:S75102; hypothetical protein sll0237 - Synechocystis sp. (strain; E=7e-43 ddbj:BAB04232.1; (AP001508) iron (III) transport system (iron; E=9e-24 ddbj:BAA75385.1; (AB013374) Yvfk [Bacillus halodurans]; E=2e-21 COG: sll0237; COG1840 ABC-type thiamine transport systems, periplasmic; E=6e-44 VC1424; COG0687 Spermidine/putrescine-binding periplasmic protein; E=7e-04 PFAM: PF01547; Bacterial extracellular solut; E=0.027 NP_863963.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) NP_863965.1 best DB hits: BLAST: pir:T34935; hypothetical protein SC3F9.13 SC3F9.13 - Streptomyces; E=2e-43 pir:T36186; hypothetical protein SCE29.07c - Streptomyces coelicolor; E=2e-37 NP_863966.1 PMID: 7538190 best DB hits: BLAST: gb:AAB47708.1; (U87792) CinA [Bacillus subtilis]; E=4e-36 swissprot:P46323; CINA_BACSU CINA-LIKE PROTEIN ----- pir:; E=3e-34 ddbj:BAB06104.1; (AP001515) competence-damage inducible protein; E=7e-33 COG: BS_cinA_1; COG1058 Predicted nucleotide-utilizing enzyme related to; E=2e-31 NP_863969.1 best DB hits: PFAM: PF01239; Protein prenyltransferase alpha subu; E=0.28 NP_863971.1 PMID: 8068720 PMID: 3013861 best DB hits: BLAST: swissprot:P52980; GLGB_STRAU 1,4-ALPHA-GLUCAN BRANCHING ENZYME; E=2e-46 swissprot:P30537; GLGB_BACCL 1,4-ALPHA-GLUCAN BRANCHING ENZYME; E=7e-45 pir:D82511; 1,4-alpha-glucan branching enzyme VCA0016 [imported] -; E=1e-44 COG: VCA0016; COG0296 1,4-alpha-glucan branching enzyme; E=1e-45 BS_amyX; COG1523 Pullulanase and related glycosidases; E=2e-21 YEL011w; COG0296 1,4-alpha-glucan branching enzyme; E=3e-20 PFAM: PF02922; Isoamylase N-terminal domain; E=2.3e-15 PF01208; Uroporphyrinogen decarboxylas; E=0.27 PF00128; Alpha amylase, catalytic doma; E=2.5e-11 NP_863974.1 PMID: 10984043 best DB hits: BLAST: pir:G83477; probable sigma-70 factor, ECF subfamily PA1351; E=1e-94 swissprot:Q52997; YDNY_RHIME HYPOTHETICAL 47.0 KDA PROTEIN IN DNAA; E=9e-61 pir:T35586; hypothetical protein SC6G4.35 SC6G4.35 - Streptomyces; E=3e-52 COG: PA1351_1; COG1595 DNA-directed RNA polymerase specialized sigma; E=5e-39 PFAM: PF00515; TPR Domain; E=0.00013 NP_863978.1 PMID: 10984043 best DB hits: BLAST: pir:E83477; conserved hypothetical protein PA1349 [imported] -; E=3e-18 swissprot:Q52996; YDNX_RHIME HYPOTHETICAL 13.6 KDA PROTEIN IN DNAA; E=1e-07 pir:C83475; hypothetical protein PA1354 [imported] - Pseudomonas; E=4e-06 NP_863979.1 PMID: 11474104 NP_863980.1 PMID: 10984043 best DB hits: BLAST: pir:C83475; hypothetical protein PA1354 [imported] - Pseudomonas; E=7e-41 pir:T35585; hypothetical protein SC6G4.34 - Streptomyces; E=3e-14 pir:E83575; hypothetical protein PA0557 [imported] - Pseudomonas; E=7e-09 NP_863981.1 PMID: 9260957 PMID: 11481431 best DB hits: BLAST: gb:AAC45595.1; (AF006743) unknown [Caulobacter crescentus]; E=0.65 NP_863983.1 PMID: 8843436 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=2e-08 embl:CAB94634.1; (AL359215) secreted glycosyl hydrolase.; E=3e-07 embl:CAB45032.1; (AL078635) large multi-functional; E=8e-05 NP_863985.1 PMID: 10910347 best DB hits: BLAST: pir:D82679; hypothetical protein XF1451 [imported] - Xylella; E=6e-11 COG: XF1451; COG1305 transglutaminases, cysteine; E=5e-12 PFAM: PF01841; Transglutaminase-like superfam; E=0.0045 NP_863987.1 PMID: 10684935 best DB hits: BLAST: pir:G71518; hypothetical protein pmpB - Chlamydia trachomatis; E=4e-07 pir:C81675; polymorphic membrane protein BC family TC0694; E=2e-06 gb:AAG57362.1; AE005455_3 (AE005455) ATP-binding; E=3e-05 PFAM: PF02415; Chlamydia protein of unknown functio; E=0.076 NP_863993.1 PMID: 7744957 PMID: 8108379 best DB hits: BLAST: pir:A57282; ankyrin-related protein unc-44 - Caenorhabditis elegans; E=1e-18 pir:T15347; ankyrin-related unc-44 - Caenorhabditis elegans -----; E=1e-18 pir:T15344; ankyrin-related unc-44 - Caenorhabditis elegans -----; E=1e-18 COG: slr1109; COG0666 Ankyrin repeat proteins; E=2e-12 PFAM: PF00023; Ank repeat; E=1.3e-08 NP_863994.1 PMID: 2598936 best DB hits: BLAST: embl:CAA34667.1; (X16679) arylsulfatase [Hemicentrotus; E=1e-33 pir:S07089; arylsulfatase (EC 3.1.6.1) - sea urchin (Lytechinus; E=2e-33 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=2e-33 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=4e-23 yejM; COG3083 Predicted hydrolase of alkaline phosphatase; E=0.006 Rv0663; COG3119 Arylsulfatase A and related enzymes; E=0.008 PFAM: PF00884; Sulfatase; E=5.6e-40 NP_863995.1 PMID: 99269066 best DB hits: BLAST: gb:AAF71375.1; AF262989_2 (AF262989) arylsulfatase [Klebsiella; E=3e-30 ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=4e-30 gb:AAF71377.1; AF262990_2 (AF262990) arylsulfatase [Klebsiella; E=5e-30 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=1e-26 VC2041; COG3083 Predicted hydrolase of alkaline phosphatase; E=2e-04 VNG0061C; COG3119 Arylsulfatase A and related enzymes; E=0.002 PFAM: PF00884; Sulfatase; E=1.3e-38 NP_863996.1 PMID: 9384377 best DB hits: BLAST: pir:B69988; hypothetical protein ytaP - Bacillus subtilis -----; E=2e-08 gb:AAB68821.1; (AF001926) xylan esterase 1 [Thermoanaerobacterium; E=0.001 pir:G82643; conserved hypothetical protein XF1745 [imported] -; E=0.003 COG: XF1745; COG1073 Hydrolases of the alpha/beta superfamily; E=3e-04 PFAM: PF01738; Dienelactone hydrolase; E=0.53 NP_863998.1 PMID: 7601151 PMID: 8654419 best DB hits: BLAST: pir:S52317; quinohemoprotein ethanol dehydrogenase (EC 1.1.99.-); E=0.006 gb:AAF86335.1; (AF277373) terahydrofurfuryl alcohol dehydrogenase; E=0.36 pir:A82284; conserved hypothetical protein VC0762 [imported] -; E=0.76 PFAM: PF01011; PQQ enzyme repeat; E=0.29 NP_863999.1 PMID: 2110981 best DB hits: BLAST: swissprot:Q00808; HET1_PODAN VEGETATIBLE INCOMPATIBILITY PROTEIN; E=1e-17 gb:AAG40737.1; AF299085_1 (AF299085) Bap1 [Myxococcus xanthus]; E=3e-12 embl:CAB45034.1; (AL078635) WD-repeat containing protein; E=3e-12 COG: sll1491; COG2319 WD40 repeat protein; E=2e-06 PFAM: PF00400; WD domain, G-beta repeat; E=0.017 NP_864000.1 PMID: 12024217 best DB hits: BLAST: gb:AAB64901.1; AAB64901 (U33050) Spp41p: Negative regulator of prp; E=0.81 swissprot:P38904; SP41_YEAST SPP41 PROTEIN ----- gb: AAA20494.1; E=0.81 NP_864003.1 best DB hits: PFAM: PF00036; EF hand; E=0.00026 NP_864005.1 PMID: 7768349 best DB hits: BLAST: pir:T42100; serinethreonine protein kinase (EC 2.7.1.-) -; E=5e-32 pir:T36502; serinethreonine protein kinase - Streptomyces; E=8e-32 swissprot:P33973; PKN1_MYXXA SERINETHREONINE-PROTEIN KINASE PKN1; E=2e-28 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=3e-29 PFAM: PF00069; Protein kinase domain; E=7e-46 PF00591; Glycosyl transferase,; E=0.28 PF00515; TPR Domain; E=0.0037 NP_864006.1 PMID: 7922023 best DB hits: BLAST: ddbj:BAA83376.1; (AB028841) BbTPO [Branchiostoma belcheri]; E=2e-72 pir:T23007; hypothetical protein K09C8.5 - Caenorhabditis elegans; E=1e-68 gb:AAF51201.1; (AE003582) CG3131 gene product [Drosophila; E=2e-67 PFAM: PF00404; Dockerin type I repeat; E=0.028 PF00141; Peroxidase; E=5.3e-11 NP_864007.1 PMID: 7889935 best DB hits: BLAST: gb:AAK03873.1; (AE006215) RpoE [Pasteurella multocida]; E=2e-07 swissprot:P44790; RPOE_HAEIN RNA POLYMERASE SIGMA-E FACTOR; E=2e-06 gb:AAD42769.1; AF121849_1 (AF121849) SigG [Synechococcus sp. PCC; E=2e-05 COG: HI0628; COG1595 DNA-directed RNA polymerase specialized sigma; E=2e-07 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=0.13 NP_864008.1 PMID: 8063104 best DB hits: BLAST: swissprot:P54741; AFSK_STRCO SERINETHREONINE PROTEIN KINASE AFSK; E=0.077 embl:CAB88430.1; (AL353815) serinethreonine protein kinase; E=0.077 pir:A82284; conserved hypothetical protein VC0762 [imported] -; E=0.32 PFAM: PF01011; PQQ enzyme repeat; E=0.39 NP_864009.1 best DB hits: BLAST: pir:G82753; two-component system, sensor protein XF0853 [imported] -; E=2e-41 gb:AAA98756.1; (L29642) sensor kinase [Pseudomonas fluorescens]; E=8e-39 pir:A82300; sensory box sensor histidine kinaseresponse regulator; E=4e-34 COG: XF0853; COG0642 Sensory transduction histidine kinases; E=2e-42 sll0779_1; COG2202 PAS/PAC domain; E=1e-23 VCA0736_1; COG0642 Sensory transduction histidine kinases; E=1e-23 PFAM: PF00785; PAC motif; E=8.5e-08 PF00989; PAS domain; E=0.013 PF00785; PAC motif; E=0.1 NP_864010.1 best DB hits: BLAST: embl:CAA71101.1; (Y09979) squalene-hopene cyclase; E=0.72 pir:T48782; lanosterol synthase related protein [imported] -; E=0.76 NP_864012.1 PMID: 9634230 best DB hits: BLAST: swissprot:Q50653; YP68_MYCTU HYPOTHETICAL 38.0 KDA PROTEIN RV2568C; E=2e-35 NP_864013.1 best DB hits: BLAST: embl:CAB83202.1; (AJ277117) membrane protein; E=1e-43 pir:H82825; transport protein XF0281 [imported] - Xylella fastidiosa; E=6e-29 gb:AAK04089.1; (AE006236) unknown [Pasteurella multocida]; E=2e-15 COG: XF0281; COG0628 Predicted permease; E=6e-30 PFAM: PF01594; Domain of unknown function DUF20; E=0.00041 NP_864015.1 PMID: 10984043 best DB hits: BLAST: pir:G83411; hypothetical protein PA1872 [imported] - Pseudomonas; E=3e-46 PFAM: PF00560; Leucine Rich Repeat; E=0.12 NP_864017.1 PMID: 11481431 NP_864018.1 best DB hits: BLAST: gb:AAB89497.1; (AE000982) lysophospholipase [Archaeoglobus; E=6e-28 gb:AAK05664.1; AE006387_7 (AE006387) conserved hypothetical; E=4e-23 pir:F72264; hypothetical protein TM1350 - Thermotoga maritima; E=5e-21 COG: AF1753; COG2267 Lysophospholipase; E=6e-29 DR1351; COG0596 Predicted hydrolases or acyltransferases (alpha/beta; E=2e-04 DR2522; COG2267 Lysophospholipase; E=4e-04 PFAM: PF00561; alpha/beta hydrolase fold; E=3.2e-07 NP_864022.1 best DB hits: PFAM: PF00324; Amino acid permease; E=0.79 NP_864023.1 catalyzes the formation of L-rhamnulose from L-rhamnose NP_864025.1 PMID: 3316663 best DB hits: BLAST: swissprot:P09378; RHAR_ECOLI L-RHAMNOSE OPERON TRANSCRIPTIONAL; E=1e-25 gb:AAG59100.1; AE005622_2 (AE005622) positive regulator for rhaRS; E=2e-25 gb:AAG59099.1; AE005622_1 (AE005622) positive regulator for rhaBAD; E=2e-20 COG: rhaR; COG2207 AraC-type DNA-binding domain-containing proteins; E=1e-26 PFAM: PF00165; Bacterial regulatory helix-turn-heli; E=2.7e-30 NP_864026.1 PMID: 2664711 best DB hits: BLAST: pir:E72546; L-fuculose-phosphate aldolase homolog - Aeropyrum pernix; E=6e-15 pir:C69054; L-fuculose-phosphate aldolase homolog - Methanobacterium; E=3e-14 swissprot:Q57199; YGBL_HAEIN HYPOTHETICAL PROTEIN HI1012 -----; E=9e-13 COG: APE1657; COG0235 Ribulose-5-phosphate 4-epimerase and related; E=6e-16 PFAM: PF00596; Class II Aldolase and Adducin N-t; E=8.8e-19 NP_864027.1 PMID: 7484410 best DB hits: BLAST: gb:AAF52769.1; (AE003624) CG3752 gene product [Drosophila; E=5e-73 ddbj:BAA34785.1; (AB015226) RALDH2 [Homo sapiens]; E=2e-72 swissprot:O94788; DHAS_HUMAN RETINALDEHYDE-SPECIFIC DEHYDROGENASE; E=2e-72 COG: YOR374w; COG1012 NAD-dependent aldehyde dehydrogenases; E=2e-71 PFAM: PF00171; Aldehyde dehydrogenase; E=7e-156 NP_864028.1 PMID: 7744061 best DB hits: BLAST: swissprot:P51691; ARS_PSEAE ARYLSULFATASE (ARYL-SULFATE; E=3e-67 pir:S69336; arylsulfatase (EC 3.1.6.1) - Pseudomonas aeruginosa; E=3e-66 gb:AAF71377.1; AF262990_2 (AF262990) arylsulfatase [Klebsiella; E=1e-53 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=3e-68 HI1246; COG1368 Phosphoglycerol transferase and related proteins,; E=2e-05 PA2333; COG3119 Arylsulfatase A and related enzymes; E=4e-04 PFAM: PF00884; Sulfatase; E=1.3e-78 NP_864029.1 PMID: 7744061 best DB hits: BLAST: swissprot:P51691; ARS_PSEAE ARYLSULFATASE (ARYL-SULFATE; E=4e-51 pir:S69336; arylsulfatase (EC 3.1.6.1) - Pseudomonas aeruginosa; E=8e-51 gb:AAF71377.1; AF262990_2 (AF262990) arylsulfatase [Klebsiella; E=1e-41 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=4e-52 PFAM: PF00884; Sulfatase; E=2.2e-86 NP_864031.1 PMID: 7542800 PMID: 11997336 best DB hits: BLAST: swissprot:P43965; YAFM_HAEIN HYPOTHETICAL PROTEIN HI0217 -----; E=0.012 COG: HI0217; COG1943 Predicted transposase; E=0.001 NP_864032.1 PMID: 20164110 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=2e-39 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=3e-38 gb:AAF49287.1; (AE003522) CG7402 gene product [Drosophila; E=3e-31 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=3e-30 VCA0802; COG1368 Phosphoglycerol transferase and related proteins,; E=1e-04 VNG0061C; COG3119 Arylsulfatase A and related enzymes; E=2e-04 PFAM: PF00143; Interferon alpha/beta domain; E=0.59 PF00884; Sulfatase; E=1.9e-42 NP_864033.1 PMID: 10632887 best DB hits: BLAST: embl:CAB53341.1; (AJ238748) alfa-L-rhamnosidase [Clostridium; E=1e-103 pir:T36406; hypothetical protein SCF34.07 - Streptomyces coelicolor; E=4e-89 embl:CAB55731.1; (AL117387) secreted protein [Streptomyces; E=1e-69 PFAM: PF02083; Urotensin II; E=0.87 NP_864036.1 PMID: 9761671 best DB hits: BLAST: gb:AAG58100.1; AE005527_3 (AE005527) unknown protein encoded by; E=0.002 gb:AAG53987.1; AF327445_1 (AF327445) transposase A; E=0.003 gb:AAF28119.1; AF153317_15 (AF153317) InsA [Shigella; E=0.007 COG: PA1937; COG2963 Transposase; E=0.004 PFAM: PF01381; Helix-turn-helix; E=0.53 PF01527; Transposase; E=6.1e-18 NP_864037.1 PMID: 11735367 best DB hits: BLAST: gb:AAA88919.1; (U13013) ORFB [Leptospira interrogans]; E=3e-47 gb:AAA88916.1; (U13012) ORFB [Leptospira interrogans]; E=1e-46 gb:AAC05649.1; (AF038931) probable transposase-related protein; E=1e-45 COG: DRB0019.2; COG2801 transposase; E=1e-35 PFAM: PF00665; Integrase core domain; E=4.8e-40 NP_864039.1 best DB hits: BLAST: embl:CAC24059.1; (AL512981) Hypothetical [Sulfolobus; E=1e-05 pir:A82418; arylesterase VCA0783 [imported] - Vibrio cholerae (group; E=0.057 swissprot:P54451; YQEF_BACSU HYPOTHETICAL 27.6 KD LIPOPROTEIN IN; E=0.49 COG: VCA0783; COG2755 Lysophospholipase L1 and related esterases; E=0.005 NP_864041.1 PMID: 11016950 best DB hits: BLAST: gb:AAG18913.1; (AE004993) chromosome segregation; Smc1; E=0.010 COG: VNG0342G; COG1196 Chromosome segregation ATPases; E=0.001 NP_864042.1 best DB hits: BLAST: gb:AAK03766.1; (AE006204) unknown [Pasteurella multocida]; E=0.34 NP_864045.1 PMID: 20164110 best DB hits: BLAST: gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=2e-23 ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=1e-21 gb:AAF58475.1; (AE003821) CG8646 gene product [Drosophila; E=3e-19 COG: yidJ; COG3119 Arylsulfatase A and related enzymes; E=3e-15 VCA0802; COG1368 Phosphoglycerol transferase and related proteins,; E=3e-07 Rv0663; COG3119 Arylsulfatase A and related enzymes; E=5e-07 PFAM: PF00884; Sulfatase; E=4.9e-29 NP_864047.1 PMID: 11181566 best DB hits: BLAST: gb:AAG41945.1; AF304053_1 (AF304053) heparan N-sulfatase [Mus; E=1e-29 gb:AAG41946.1; AF304054_1 (AF304054) mutant heparan N-sulfatase; E=1e-29 gb:AAF29467.1; (AF156255) N-sulfoglucosamine sulfohydrolase [Mus; E=1e-29 COG: Rv0296c; COG3119 Arylsulfatase A and related enzymes; E=3e-25 PFAM: PF00884; Sulfatase; E=1e-29 NP_864048.1 PMID: 1646017 best DB hits: BLAST: pir:T36406; hypothetical protein SCF34.07 - Streptomyces coelicolor; E=2e-05 pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=0.010 PFAM: PF00034; Cytochrome c; E=0.00011 NP_864051.1 PMID: 10632887 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=1e-04 embl:CAB53341.1; (AJ238748) alfa-L-rhamnosidase [Clostridium; E=0.019 NP_864053.1 PMID: 7684040 best DB hits: BLAST: gb:AAG58136.1; AE005530_2 (AE005530) enzyme [Escherichia; E=1e-83 pir:E65086; hypothetical protein b2999 - Escherichia coli (strain; E=4e-35 pir:F65086; hypothetical protein b3000 - Escherichia coli (strain; E=2e-31 COG: yghX+Y; COG0412 Dienelactone hydrolase and related enzymes; E=3e-36 PFAM: PF01738; Dienelactone hydrolase; E=5.7e-57 NP_864054.1 PMID: 9371463 best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=5e-05 pir:JC4881; polyvinyl-alcohol dehydrogenase (acceptor) (EC; E=0.017 gb:AAB89850.1; (AE001008) conserved hypothetical protein; E=0.076 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=4e-06 PFAM: PF01011; PQQ enzyme repeat; E=0.1 PF00993; Class II histocompatibility ant; E=0.47 PF01011; PQQ enzyme repeat; E=0.00012 NP_864056.1 PMID: 10952301 best DB hits: BLAST: pir:E82064; conserved hypothetical protein VC2547 [imported] -; E=0.44 NP_864057.1 PMID: 7596293 best DB hits: BLAST: pir:S75310; gumB protein - Synechocystis sp. (strain PCC 6803); E=3e-06 pir:E72350; hypothetical protein TM0638 - Thermotoga maritima; E=0.005 swissprot:Q46629; AMSH_ERWAM AMYLOVORAN EXPORT OUTER MEMBRANE; E=0.012 COG: sll1581; COG1596 Periplasmic protein involved in polysaccharide; E=3e-07 yccZ; COG1596 Periplasmic protein involved in polysaccharide export; E=0.009 NP_864058.1 PMID: 3040663 PMID: 3260234 PMID: 2404938 best DB hits: BLAST: swissprot:P12287; BLAR_BACLI REGULATORY PROTEIN BLAR1 -----; E=7e-09 pir:I39942; penicillinase antirepressor penJ - Bacillus; E=8e-09 swissprot:P26597; MECR_STAEP METHICILLIN RESISTANCE MECR1 PROTEIN; E=4e-07 NP_864059.1 PMID: 3096969 PMID: 3305074 PMID: 3260234 PMID: 3040663 PMID: 3498148 best DB hits: BLAST: swissprot:P06555; BLAI_BACLI PENICILLINASE REPRESSOR (REGULATORY; E=0.24 pir:B28183; beta-lactamase repressor protein - Bacillus; E=0.34 swissprot:P26598; MECI_STAEP METHICILLIN RESISTANCE REGULATORY; E=0.60 NP_864061.1 PMID: 20164110 best DB hits: BLAST: gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=7e-47 embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=8e-44 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=8e-44 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=6e-26 PAB0793; COG2194 Predicted membrane-associated, metal-dependent; E=9e-06 Rv3077; COG3119 Arylsulfatase A and related enzymes; E=6e-04 PFAM: PF00884; Sulfatase; E=8.3e-90 NP_864062.1 PMID: 8244397 PMID: 8325651 best DB hits: BLAST: gb:AAA16877.1; (L13329) iduronate-2-sulfatase [Homo sapiens]; E=7e-39 gb:AAB33747.1; iduronate-2-sulfatase, IDS {EC 3.1.6.13} [human,; E=3e-38 gb:AAA37880.1; (L07921) iduronate sulfatase [Mus musculus]; E=5e-36 COG: yidJ; COG3119 Arylsulfatase A and related enzymes; E=3e-26 PFAM: PF00884; Sulfatase; E=2e-26 NP_864063.1 best DB hits: PFAM: PF01453; Lectin (probable mannose binding); E=0.047 NP_864064.1 PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=3e-56 pir:S07089; arylsulfatase (EC 3.1.6.1) - sea urchin (Lytechinus; E=4e-56 embl:CAA34667.1; (X16679) arylsulfatase [Hemicentrotus; E=6e-56 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=1e-29 PA1689; COG1368 Phosphoglycerol transferase and related proteins,; E=6e-07 PA2333; COG3119 Arylsulfatase A and related enzymes; E=5e-05 PFAM: PF00884; Sulfatase; E=3.9e-110 NP_864065.1 PMID: 3181160 best DB hits: BLAST: pir:S07089; arylsulfatase (EC 3.1.6.1) - sea urchin (Lytechinus; E=2e-29 swissprot:P14000; ARS_HEMPU ARYLSULFATASE PRECURSOR (ARYL-SULFATE; E=2e-29 embl:CAA34667.1; (X16679) arylsulfatase [Hemicentrotus; E=2e-29 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=3e-25 VC2041; COG3083 Predicted hydrolase of alkaline phosphatase; E=6e-05 VNG0061C; COG3119 Arylsulfatase A and related enzymes; E=9e-05 PFAM: PF00884; Sulfatase; E=6.3e-50 NP_864066.1 PMID: 8843436 best DB hits: BLAST: embl:CAB45032.1; (AL078635) large multi-functional; E=7e-23 embl:CAB58265.1; (AL121849) multi-domain protein; E=5e-21 pir:T36423; probable large, multifunctional secreted protein -; E=0.048 NP_864068.1 PMID: 9256491 best DB hits: BLAST: pir:T03516; probable outer membrane secretion protein - Rhodobacter; E=0.040 gb:AAA21546.1; (U13767) HlyA [Anabaena sp.]; E=0.18 gb:AAF36415.1; (AF141932) rhizobiocin RzcA [Rhizobium leguminosarum; E=0.30 NP_864069.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_864072.1 best DB hits: BLAST: swissprot:P74311; Y944_SYNY3 HYPOTHETICAL 42.4 KDA PROTEIN SLR0944; E=2e-86 pir:H81780; probable integral membrane efflux protein NMA2095; E=3e-47 gb:AAK04027.1; (AE006231) unknown [Pasteurella multocida]; E=7e-40 COG: slr0944; COG0798 Arsenite efflux pump ACR3 and related permeases; E=2e-87 PFAM: PF01758; Sodium Bile acid symporter family; E=7.8e-49 NP_864074.1 PMID: 11325940 best DB hits: BLAST: ddbj:BAA89624.1; (AB036665) similar to transposase of Tn5; E=0.043 embl:CAA23888.1; (V00615) open reading frame [Escherichia coli]; E=0.17 embl:CAA23891.1; (V00617) open reading frame [Escherichia coli]; E=0.17 PFAM: PF01609; Transposase (IS4 family); E=0.079 NP_864077.1 PMID: 9537504 best DB hits: BLAST: pir:H83377; probable transporter PA2135 [imported] - Pseudomonas; E=2e-35 ddbj:BAB07757.1; (AP001520) Na+H+ antiporter [Bacillus; E=0.002 gb:AAF72041.1; AF128238_1 (AF128238) Na+H+ antiporter Cnh1; E=0.003 COG: PA2135; COG0025 NhaP-type Na+/H+ and K+/H+ antiporters; E=1e-36 PFAM: PF00999; Sodium/hydrogen exchanger fami; E=1.3e-14 NP_864078.1 best DB hits: PFAM: PF00459; Inositol monophosphatase; E=0.67 NP_864083.1 PMID: 10708371 best DB hits: BLAST: gb:AAG55028.1; AE005248_9 (AE005248) receptor; E=4e-61 gb:AAG54539.1; AE005200_1 (AE005200) Z0271 gene product; E=1e-60 swissprot:P28917; YDCC_ECOLI H REPEAT-ASSOCIATED PROTEIN IN; E=1e-60 PFAM: PF01811; Transposase; E=1.3e-65 NP_864087.1 PMID: 9761671 PMID: 11823852 best DB hits: BLAST: pir:H83522; conserved hypothetical protein PA0979 [imported] -; E=0.33 PFAM: PF01527; Transposase; E=4.2e-19 NP_864088.1 PMID: 10384242 best DB hits: BLAST: gb:AAB58155.1; (U82621) hypothetical protein [Shigella flexneri]; E=3e-34 gb:AAF09022.1; (AF139596) unknown [Shigella flexneri]; E=3e-34 gb:AAC61713.1; (AF081284) Hp1 [Escherichia coli]; E=1e-33 COG: tra5_g4; COG2801 transposase; E=1e-26 PFAM: PF00665; Integrase core domain; E=5e-39 NP_864090.1 PMID: 8828137 best DB hits: BLAST: gb:AAC38715.1; (AF030367) maturase-related protein [Streptococcus; E=2e-46 ddbj:BAA90841.1; (AB031210) orf1; similar to E. coli ykfC; E=2e-45 ddbj:BAB03943.1; (AP001507) transposase (11) [Bacillus; E=2e-45 COG: BH0099; COG3344 Uncharacterized BCR; E=2e-46 PFAM: PF00078; Reverse transcriptase (RNA-dependen; E=2.5e-60 NP_864098.1 PMID: 8407802 best DB hits: BLAST: pir:G64595; acriflavine resistance protein - Helicobacter pylori; E=8e-52 gb:AAC14433.1; (AF059041) RND pump protein [Helicobacter pylori]; E=2e-51 pir:F82171; transporter, AcrBD/F family VC1673 [imported] - Vibrio; E=6e-44 COG: HP0607; COG0841 Cation/multidrug efflux pump; E=8e-53 PFAM: PF00873; AcrB/AcrD/AcrF family; E=5.9e-08 NP_864100.1 best DB hits: BLAST: pir:A83330; probable RND efflux membrane fusion protein precursor; E=0.001 pir:A83342; conserved hypothetical protein PA2430 [imported] -; E=0.009 gb:AAC38085.1; (AF012101) VceA [Vibrio cholerae]; E=0.040 COG: PA2430; COG1566 Multidrug resistance efflux pump; E=9e-04 PFAM: PF00529; HlyD family secretion protein; E=3.1e-06 NP_864101.1 PMID: 10671440 best DB hits: BLAST: gb:AAF20930.1; AF207529_4 (AF207529) PhlH [Pseudomonas; E=2e-04 pir:C70617; probable transcriptional regulator Rv0144 - Mycobacterium; E=0.005 pir:T36792; probable transcriptional regulator tetR - Streptomyces; E=0.022 COG: Rv0144; COG1309 Transcriptional regulator; E=4e-04 PFAM: PF00440; Bacterial regulatory proteins, tetR; E=7.5e-12 NP_864103.1 PMID: 1369081 best DB hits: BLAST: gb:AAB49694.1; (U89495) protease [Bacillus sp. PD498]; E=7e-19 pir:I39973; alkaline serine proteinase - Bacillus smithii -----; E=2e-18 swissprot:P35835; SUBN_BACNA SUBTILISIN NAT PRECURSOR -----; E=1e-17 COG: BS_aprE; COG1404 Subtilisin-like serine proteases; E=2e-18 PFAM: PF00082; Subtilase; E=7.8e-27 NP_864105.1 PMID: 93125117 PMID: 95198547 PMID: 11759840 best DB hits: BLAST: pir:S61441; surface-associated protein cshA precursor - Streptococcus; E=6e-05 pir:S27982; cshA protein - Streptococcus gordonii (fragment); E=0.006 ddbj:BAB10333.1; (AB016872) gene_id:K21P3.2~unknown protein; E=0.025 PFAM: PF00404; Dockerin type I repeat; E=0.61 NP_864108.1 PMID: 8404889 PMID: 3098260 best DB hits: BLAST: swissprot:P16115; LDH_THEMA L-LACTATE DEHYDROGENASE ----- pir:; E=2e-51 pdb:1A5Z; Lactate Dehydrogenase From Thermotoga Maritima; E=2e-51 pdb:1LLC; L-Lactate Dehydrogenase (E.C.1.1.1.27) Complex With; E=9e-49 COG: TM1867; COG0039 Malate/lactate dehydrogenases; E=2e-52 PFAM: PF00056; lactate/malate dehydrogenase, NA; E=7.5e-36 PF02866; lactate/malate dehydrogenase, al; E=5e-36 NP_864111.1 PMID: 9371459 best DB hits: BLAST: swissprot:O27101; YA22_METTH BIOPOLYMER TRANSPORT PROTEIN; E=0.006 pir:G83274; probable tolQ-type transport protein PA2983 [imported] -; E=0.009 gb:AAD39910.1; AF119047_3 (AF119047) ExbB-like protein [Vibrio; E=0.013 COG: MTH1022; COG0811 Biopolymer transport proteins; E=6e-04 PFAM: PF01618; MotA/TolQ/ExbB proton channel famil; E=4.6e-05 NP_864115.1 PMID: 8918248 best DB hits: BLAST: swissprot:P94661; EUO2_CHLPS EARLY UPSTREAM OPEN READING FRAME; E=0.25 swissprot:Q06566; EUO1_CHLPS EARLY UPSTREAM OPEN READING FRAME; E=0.42 swissprot:Q9Z7Z2; Y561_CHLPN HYPOTHETICAL PROTEIN CPN0561CP0189; E=0.44 NP_864118.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_864119.1 PMID: 9537320 best DB hits: BLAST: pir:B70374; conserved hypothetical protein aq_854 - Aquifex aeolicus; E=0.002 COG: aq_854; COG0457 TPR-repeat-containing proteins; E=2e-04 PFAM: PF00515; TPR Domain; E=0.0063 NP_864121.1 PMID: 11481431 NP_864122.1 best DB hits: BLAST: gb:AAD05531.1; (AF083240) c-type cytochrome precursor [Shewanella; E=0.024 gb:AAD05534.1; (AF083240) deca-heme c-type cytochrome [Shewanella; E=0.039 NP_864127.1 PMID: 96163873 best DB hits: BLAST: pir:S75200; fat protein - Synechocystis sp. (strain PCC 6803) -----; E=6e-43 embl:CAA60685.1; (X87241) homologue of Drosophila Fat protein [Homo; E=2e-33 gb:AAD20459.1; (AF100960) protocadherin [Rattus norvegicus]; E=4e-32 PFAM: PF00028; Cadherin domain; E=0.001 NP_864128.1 PMID: 9884231 best DB hits: BLAST: pir:T28679; fibrinogen-binding protein homolog - Staphylococcus; E=0.003 embl:CAB75732.1; (Y18653) bone sialoprotein-binding protein; E=0.024 pir:T28680; fibrinogen-binding protein homolog - Staphylococcus; E=0.030 NP_864132.1 PMID: 20233298 PMID: 11743194 best DB hits: BLAST: gb:AAF30402.1; AF109924_1 (AF109924) sulfatase 1 precursor [Helix; E=0.009 NP_864134.1 best DB hits: PFAM: PF00036; EF hand; E=0.00036 NP_864136.1 PMID: 8052622 best DB hits: BLAST: swissprot:P45215; YE59_HAEIN PROBABLE RNA POLYMERASE SIGMA FACTOR; E=0.28 embl:CAB55836.1; (AJ249581) Sig15 protein [Streptomyces; E=0.38 pir:F81002; probable sigma factor, NMB2144 [imported] - Neisseria; E=0.79 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=5.8e-10 NP_864139.1 PMID: 7607529 best DB hits: BLAST: swissprot:P55632; Y4QK_RHISN INTEGRASERECOMBINASE Y4QK; E=5e-30 prf:2115270D; integrase [Weeksella zoohelcum]; E=3e-29 swissprot:P55429; Y4EF_RHISN INTEGRASERECOMBINASE Y4EF; E=2e-28 COG: MTH893; COG0582 Integrase; E=4e-26 PFAM: PF00589; Phage integrase; E=2.8e-39 NP_864141.1 best DB hits: BLAST: gb:AAC23940.1; (U93274) FimV [Pseudomonas aeruginosa]; E=0.78 NP_864145.1 PMID: 9163424 best DB hits: BLAST: swissprot:P55631; Y4QJ_RHISN TRANSPOSASE Y4QJ -----; E=1e-38 prf:2115270C; transposase [Weeksella zoohelcum]; E=6e-35 pir:S23782; transposase tnpA (insertion sequence IS91) - Escherichia; E=4e-13 NP_864146.1 PMID: 7607529 best DB hits: BLAST: swissprot:P55632; Y4QK_RHISN INTEGRASERECOMBINASE Y4QK; E=5e-23 swissprot:P55429; Y4EF_RHISN INTEGRASERECOMBINASE Y4EF; E=1e-22 prf:2115270D; integrase [Weeksella zoohelcum]; E=4e-15 COG: PAB0255; COG0582 Integrase; E=5e-15 PFAM: PF00589; Phage integrase; E=2.4e-13 NP_864151.1 PMID: 7607529 best DB hits: BLAST: swissprot:P55631; Y4QJ_RHISN TRANSPOSASE Y4QJ -----; E=9e-39 prf:2115270C; transposase [Weeksella zoohelcum]; E=7e-35 pir:S23782; transposase tnpA (insertion sequence IS91) - Escherichia; E=4e-14 NP_864154.1 best DB hits: PFAM: PF02012; BNR repeat; E=0.072 NP_864155.1 PMID: 8905231 best DB hits: BLAST: pir:S75363; hypothetical protein sll1913 - Synechocystis sp. (strain; E=2e-04 pir:S76658; hypothetical protein - Synechocystis sp. (strain PCC; E=9e-04 embl:CAB62685.1; (AL133422) membrane protein.; E=0.002 PFAM: PF01593; Flavin containing amine oxidase; E=0.49 PF00070; Pyridine nucleotide-disulphide; E=0.14 NP_864157.1 PMID: 11785976 best DB hits: BLAST: ddbj:BAB05550.1; (AP001513) L-lactate permease [Bacillus; E=1e-116 pir:H82393; probable L-lactate permease VCA0983 [imported] - Vibrio; E=1e-105 ddbj:BAB03938.1; (AP001507) L-lactate permease [Bacillus; E=1e-102 COG: BH1831; COG1620 L-lactate permease; E=1e-117 PFAM: PF02652; L-lactate permease; E=1.9e-41 NP_864159.1 PMID: 3146645 best DB hits: BLAST: swissprot:Q10858; YJ99_MYCTU HYPOTHETICAL 45.3 KDA TRANSPORT; E=2e-23 embl:CAB76881.1; (AL159139) amino acid transporter; E=2e-16 pir:G82809; amino acid transporter XF0408 [imported] - Xylella; E=3e-15 COG: Rv1999c; COG0531 Amino acid transporters; E=2e-24 BS_gabP; COG1113 Gamma-aminobutyrate and related permeases; E=2e-06 Rv3253c; COG0531 Amino acid transporters; E=4e-06 PFAM: PF00324; Amino acid permease; E=0.00042 NP_864165.1 PMID: 7607529 best DB hits: BLAST: swissprot:P55631; Y4QJ_RHISN TRANSPOSASE Y4QJ -----; E=7e-39 prf:2115270C; transposase [Weeksella zoohelcum]; E=6e-35 pir:S23782; transposase tnpA (insertion sequence IS91) - Escherichia; E=5e-14 NP_864166.1 PMID: 7607529 best DB hits: BLAST: prf:2115270D; integrase [Weeksella zoohelcum]; E=7e-17 swissprot:P55632; Y4QK_RHISN INTEGRASERECOMBINASE Y4QK; E=9e-17 swissprot:P55429; Y4EF_RHISN INTEGRASERECOMBINASE Y4EF; E=5e-16 COG: PAB0255; COG0582 Integrase; E=5e-13 PFAM: PF00589; Phage integrase; E=2.6e-19 NP_864175.1 PMID: 10809675 best DB hits: BLAST: gb:AAF72520.1; AF248951_1 (AF248951) mucin-desulfating sulfatase; E=1e-111 swissprot:Q29460; PA1G_BOVIN PLATELET-ACTIVATING FACTOR; E=4e-23 pdb:1ES9; A Chain A, X-Ray Crystal Structure Of R22k Mutant Of The; E=4e-23 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=4e-23 PAB0793; COG2194 Predicted membrane-associated, metal-dependent; E=3e-04 yejM; COG3083 Predicted hydrolase of alkaline phosphatase; E=0.005 PFAM: PF00884; Sulfatase; E=2.8e-33 PF00657; Lipase/Acylhydrolase with GDSL-li; E=0.033 PF02266; Platelet activating factor acetyl; E=2.5e-24 NP_864176.1 best DB hits: BLAST: pir:A82990; conserved hypothetical protein PA5247 [imported] -; E=2e-27 swissprot:P52089; YPAH_PSELE HYPOTHETICAL 21.7 KD PROTEIN IN PAHZ1; E=3e-26 pir:C64767; yaiI protein - Escherichia coli ----- gb:; E=4e-26 COG: PA5247; COG1671 Uncharacterized BCR; E=2e-28 PFAM: PF02639; Uncharacterized BCR, YaiI/YqxD; E=7e-46 NP_864177.1 PMID: 9301118 best DB hits: BLAST: pir:G72219; conserved hypothetical protein - Thermotoga maritima; E=1e-40 ddbj:BAB06727.1; (AP001517) BH3008~unknown conserved protein; E=2e-36 pir:H71130; hypothetical protein PH0813 - Pyrococcus horikoshii; E=3e-26 COG: TM1723; COG1228 Imidazolonepropionase and related amidohydrolases; E=1e-41 BH0421; COG1820 N-acetylglucosamine-6-phosphate deacetylase; E=1e-04 VC1205; COG1228 Imidazolonepropionase and related amidohydrolases; E=3e-04 PFAM: PF02612; N-acetylglucosamine-6-phosphat; E=0.073 PF01979; Adenine deaminase; E=0.0022 PF00744; Dihydroorotase-like; E=0.48 NP_864178.1 PMID: 10192928 best DB hits: BLAST: ddbj:BAB06727.1; (AP001517) BH3008~unknown conserved protein; E=1e-19 pir:G72219; conserved hypothetical protein - Thermotoga maritima; E=3e-16 pir:G71130; hypothetical protein PH0812 - Pyrococcus horikoshii; E=2e-12 COG: BH3008; COG1228 Imidazolonepropionase and related amidohydrolases; E=1e-20 PFAM: PF01311; Bacterial export proteins, famil; E=0.13 PF02612; N-acetylglucosamine-6-phosphate; E=0.17 NP_864179.1 PMID: 8063104 best DB hits: BLAST: swissprot:P54741; AFSK_STRCO SERINETHREONINE PROTEIN KINASE AFSK; E=0.001 embl:CAB88430.1; (AL353815) serinethreonine protein kinase; E=0.001 pir:H69064; serinethreonine protein kinase related protein -; E=0.001 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=1e-04 PFAM: PF01011; PQQ enzyme repeat; E=0.77 NP_864181.1 PMID: 1517220 best DB hits: BLAST: pir:H75515; tetracycline-efflux transporter - Deinococcus; E=3e-68 swissprot:P02982; TCR1_ECOLI TETRACYCLINE RESISTANCE PROTEIN,; E=4e-52 ddbj:BAA96336.1; (AB043474) RK2 tetracycline resistance protein; E=8e-52 COG: DR0472; COG0477 Permeases of the major facilitator superfamily; E=3e-69 BS_ywfA; COG2814 Arabinose efflux permease; E=9e-06 bcr; COG0477 Permeases of the major facilitator superfamily; E=1e-05 PFAM: PF01587; Monocarboxylate transporter; E=0.45 PF00083; Sugar (and other) transporter; E=0.36 NP_864182.1 PMID: 8547173 best DB hits: BLAST: pir:E82632; NAD(P)H steroid dehydrogenase XF1825 [imported] -; E=7e-54 pir:H83099; probable oxidoreductase PA4361 [imported] - Pseudomonas; E=2e-39 gb:AAG11424.1; AC015449_6 (AC015449) Similar to steriod; E=3e-34 COG: XF1825; COG0451 Nucleoside-diphosphate-sugar epimerases; E=7e-55 BH1108; COG1087 UDP-glucose 4-epimerase; E=1e-08 Rv3464; COG1088 dTDP-D-glucose 4,6-dehydratase; E=1e-07 PFAM: PF01370; NAD dependent epimerase/dehydrat; E=0.087 PF00106; short chain dehydrogenase; E=0.038 PF00235; Profilin; E=0.88 NP_864184.1 PMID: 9083067 best DB hits: COG: BH1262; COG0457 TPR-repeat-containing proteins; E=3e-05 PFAM: PF00533; BRCA1 C Terminus (BRCT) domain; E=7.9e-06 PF00515; TPR Domain; E=0.012 NP_864186.1 PMID: 11016950 best DB hits: BLAST: gb:AAG18863.1; (AE004989) Vng0271c [Halobacterium sp. NRC-1]; E=7e-30 gb:AAG45169.1; AF317883_1 (AF317883) unknown [Synechococcus sp.; E=8e-20 pir:T45180; hypothetical protein u1756l [imported] - Mycobacterium; E=0.026 COG: VNG0271C; COG0463 Glycosyltransferases involved in cell wall; E=7e-31 NP_864187.1 PMID: 11123673 best DB hits: BLAST: pir:A75484; conserved hypothetical protein - Deinococcus radiodurans; E=2e-24 pir:D72252; conserved hypothetical protein - Thermotoga maritima; E=1e-23 embl:CAB89843.1; (AJ251547) response regulator [Xanthomonas; E=2e-23 COG: DR0719; COG2206 HD-GYP domain; E=2e-25 PFAM: PF01966; HD domain; E=7.2e-08 NP_864190.1 PMID: 9384377 best DB hits: BLAST: pir:H69818; conserved hypothetical protein yhaN - Bacillus subtilis; E=7e-08 gb:AAC44802.1; (U21636) unknown [Staphylococcus aureus]; E=4e-06 pir:F72363; hypothetical protein - Thermotoga maritima (strain MSB8); E=0.005 NP_864192.1 PMID: 9384377 best DB hits: BLAST: pir:A69819; probable phosphoesterase (EC 3.1.-.-) yhaO - Bacillus; E=6e-12 COG: BS_yhaO; COG0420 DNA repair exonuclease; E=5e-13 PFAM: PF02549; DNA repair exonuclease; E=6.5e-05 NP_864193.1 PMID: 1482681 best DB hits: BLAST: embl:CAB59581.1; (AL132662) possible gluconolactonase precursor; E=1e-19 pir:B82698; gluconolactonase precursor XF1297 [imported] - Xylella; E=2e-19 pir:A75539; probable gluconolactonase - Deinococcus radiodurans; E=2e-16 COG: XF1297; COG3386 Uncharacterized protein; E=2e-20 NP_864194.1 PMID: 11157937 best DB hits: BLAST: pir:F71196; probable hexosyltransferase (EC 2.4.1.-) PH1844 -; E=1e-09 pir:T35150; probable glycosyl transferase - Streptomyces coelicolor; E=8e-09 swissprot:Q9R9N2; LPSB_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS; E=3e-08 COG: PH1844; COG0438 Predicted glycosyltransferases; E=1e-10 PFAM: PF00534; Glycosyl transferases group 1; E=2.7e-25 NP_864198.2 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA NP_864201.1 best DB hits: BLAST: pir:T36187; hypothetical protein SCE29.08c - Streptomyces coelicolor; E=6e-52 pir:T34934; hypothetical protein SC3F9.12 SC3F9.12 - Streptomyces; E=9e-47 swissprot:Q58778; YD83_METJA HYPOTHETICAL PROTEIN MJ1383 PRECURSOR; E=7e-19 COG: MJ1383; COG1099 Predicted metal-dependent hydrolases with the; E=6e-20 NP_864202.1 PMID: 7774596 PMID: 1938888 best DB hits: BLAST: pir:H75338; DNA helicase RecG - Deinococcus radiodurans (strain R1); E=1e-114 swissprot:Q55681; RECG_SYNY3 ATP-DEPENDENT DNA HELICASE RECG; E=1e-111 pir:G72405; ATP-dependent DNA helicase - Thermotoga maritima (strain; E=1e-109 COG: DR1916; COG1200 RecG-like helicases; E=1e-115 BS_mfd; COG1197 Transcription-repair coupling factor - superfamily; E=5e-56 sll0377; COG1197 Transcription-repair coupling factor - superfamily II; E=2e-54 PFAM: PF01336; OB-fold nucleic acid binding domai; E=0.13 PF00271; Helicase conserved C-terminal doma; E=0.0098 PF00270; DEAD/DEAH box helicase; E=2.9e-21 NP_864204.1 best DB hits: BLAST: pir:A69643; serine proteinase Do, heat-shock protein htrA - Bacillus; E=0.77 PFAM: PF00590; Tetrapyrrole (Corrin/Porphyri; E=0.39 NP_864206.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.014 NP_864211.1 PMID: 10086842 best DB hits: BLAST: pir:T04014; hypothetical protein F17A8.20 - Arabidopsis thaliana; E=4e-24 ddbj:BAB07562.1; (AP001520) oxidoreductase [Bacillus halodurans]; E=8e-21 gb:AAD39613.1; AC007454_12 (AC007454) Similar to gb D14605 AX110P; E=2e-20 COG: BH3843; COG0673 Predicted dehydrogenases and related proteins; E=8e-22 PFAM: PF01408; Oxidoreductase, NAD-bin; E=4.8e-38 NP_864212.1 PMID: 2574599 best DB hits: BLAST: swissprot:Q52905; GLNB_RHIME NITROGEN REGULATORY PROTEIN P-II; E=3e-18 gb:AAD56036.1; AF182395_2 (AF182395) P-II regulatory protein; E=1e-17 swissprot:P21193; GLNB_AZOBR NITROGEN REGULATORY PROTEIN P-II; E=1e-17 COG: NMB1995; COG0347 Nitrogen regulatory protein PII; E=7e-18 PFAM: PF00543; Nitrogen regulatory protein P-II; E=5.6e-25 NP_864215.1 PMID: 7921236 PMID: 9922273 best DB hits: BLAST: embl:CAB66286.1; (AL136519) bifunctional carbohydrate binding and; E=8e-26 swissprot:P36948; RBSC_BACSU RIBOSE TRANSPORT SYSTEM PERMEASE; E=1e-23 pir:S72834; hypothetical protein B1620_F2_68 - Mycobacterium leprae; E=2e-23 COG: BS_rbsC; COG1172 Ribose/xylose/arabinose/galactoside ABC-type; E=3e-23 yphD; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport; E=3e-23 VCA0129; COG1172 Ribose/xylose/arabinose/galactoside ABC-type; E=3e-23 NP_864217.1 PMID: 2997739 PMID: 2844237 best DB hits: BLAST: swissprot:O24706; KAD_SYNP6 ADENYLATE KINASE (ATP-AMP; E=3e-08 gb:AAC41513.1; (L47150) adenylate kinase [Neisseria meningitidis]; E=2e-07 swissprot:P49980; KAD_NEIMA ADENYLATE KINASE (ATP-AMP; E=2e-07 COG: NMB0823; COG0563 Adenylate kinase and related kinases; E=2e-08 PFAM: PF00406; Adenylate kinase; E=0.062 NP_864218.1 PMID: 8843436 best DB hits: BLAST: embl:CAB93401.1; (AL357524) hypothetical protein SCD12A.10c; E=2e-04 ddbj:BAB06409.1; (AP001516) BH2690~unknown [Bacillus halodurans]; E=0.002 pir:T09897; hypothetical protein T22A6.170 - Arabidopsis thaliana; E=0.038 COG: BH2690; COG0775 Nucleoside phosphorylase; E=2e-04 NP_864222.1 PMID: 1607366 best DB hits: BLAST: swissprot:P28793; FAOB_PSEFR FATTY OXIDATION COMPLEX ALPHA SUBUNIT; E=6e-27 pir:G83269; fatty-acid oxidation complex alpha-subunit PA3014; E=2e-25 pir:T34706; fatty acid oxidation complex alpha-subunit -; E=1e-24 COG: PA3014_2; COG1250 3-Hydroxyacyl-CoA dehydrogenase; E=2e-26 PFAM: PF02737; 3-hydroxyacyl-CoA dehydrogenase, NAD; E=6.3e-15 PF00725; 3-hydroxyacyl-CoA dehydrogenase, C-t; E=7.2e-14 NP_864225.1 PMID: 11889109 NP_864226.1 PMID: 2536679 best DB hits: BLAST: gb:AAF13662.1; AF188935_60 (AF188935) pXO2-57 [Bacillus anthracis]; E=2e-05 gb:AAB41842.1; (U60883) CapC [Bacillus firmus]; E=7e-04 pir:G70069; poly-gamma-glutamic synthesis pgsC protein - Bacillus; E=0.002 NP_864227.1 PMID: 2536679 best DB hits: BLAST: swissprot:P19580; CAPB_BACAN CAPB PROTEIN ----- pir: A30091; E=7e-53 gb:AAF13663.1; AF188935_61 (AF188935) pXO2-58 [Bacillus anthracis]; E=7e-53 pir:F70069; poly-gamma-glutamic synthesis pgsB protein - Bacillus; E=4e-50 NP_864232.1 PMID: 8843436 best DB hits: BLAST: embl:CAB58265.1; (AL121849) multi-domain protein; E=2e-24 embl:CAB45032.1; (AL078635) large multi-functional; E=3e-24 pir:T36423; probable large, multifunctional secreted protein -; E=0.003 NP_864233.1 PMID: 8905231 best DB hits: BLAST: pir:S75930; hypothetical protein - Synechocystis sp. (strain PCC; E=7e-09 pir:A57426; puc expression activator appA - Rhodobacter sphaeroides; E=4e-06 pir:H64861; hypothetical protein b1163 - Escherichia coli -----; E=3e-04 NP_864234.1 PMID: 10984043 best DB hits: BLAST: pir:B83071; hypothetical protein PA4592 [imported] - Pseudomonas; E=1e-04 PFAM: PF02321; Outer membrane efflux protein; E=0.00035 NP_864235.1 PMID: 8181764 best DB hits: BLAST: embl:CAA73293.1; (Y12758) prsE [Rhizobium leguminosarum]; E=3e-08 swissprot:P18790; HLYD_ACTAC LEUKOTOXIN SECRETION PROTEIN D; E=4e-08 embl:CAC06752.1; (AJ293261) protein transporter PrsE; E=2e-07 COG: PA1247; COG0845 Membrane-fusion protein; E=4e-08 aq_1060; COG1566 Multidrug resistance efflux pump; E=0.004 NP_864236.1 PMID: 8181764 best DB hits: BLAST: pir:H82381; toxin secretion ATP-binding protein VCA1084 [imported] -; E=2e-12 pir:S75806; hemolysin secretion protein hlyB - Synechocystis sp.; E=6e-12 gb:AAD21059.1; (AF119150) RtxB protein [Vibrio cholerae]; E=6e-12 COG: VCA1084; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain; E=2e-13 sll1180_2; COG2274 ABC-type bacteriocin/lantibiotic exporters,; E=5e-13 VC1448; COG1132 ABC-type multidrug/protein/lipid transport system,; E=6e-13 PFAM: PF00664; ABC transporter transmembrane re; E=0.046 PF00005; ABC transporter; E=6.8e-06 NP_864237.1 PMID: 10952301 best DB hits: BLAST: pir:H82182; conserved hypothetical protein VC1582 [imported] -; E=1e-112 pir:G70374; hypothetical protein aq_863 - Aquifex aeolicus -----; E=2e-70 pir:E69745; hypothetical protein ybcD - Bacillus subtilis -----; E=7e-63 COG: VC1582; COG3002 Uncharacterized BCR; E=1e-113 NP_864240.1 best DB hits: BLAST: pir:G82182; probable NADH dehydrogenase VC1581 [imported] - Vibrio; E=2e-42 gb:AAF27211.1; AF111731_1 (AF111731) NADH dehydrogenase [Ceiba; E=2e-39 gb:AAF27226.1; AF111746_1 (AF111746) NADH dehydrogenase; E=3e-39 COG: VC1581; COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L); E=1e-43 BS_shaA_1; COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain; E=1e-25 PFAM: PF00662; NADH-Ubiquinone oxidoreductase; E=0.0058 PF00361; NADH-Ubiquinone/plastoquinone; E=5.6e-38 NP_864242.1 PMID: 8843436 best DB hits: BLAST: embl:CAC14481.1; (AL446003) hypothetical protein [Streptomyces; E=9e-15 pir:E64456; hypothetical protein MJ1254 - Methanococcus jannaschii; E=0.005 embl:CAC22761.1; (AL512944) hypothetical protein SC8D11.44c; E=0.035 PFAM: PF01037; AsnC family; E=0.66 NP_864243.1 PMID: 7699720 best DB hits: BLAST: embl:CAA03999.1; (AJ000330) Styrene response regulator; E=3e-15 gb:AAC23717.1; (AF031161) transcriptional activator [Pseudomonas; E=3e-15 gb:AAG09418.1; AF180147_10 (AF180147) response regulator TobT; E=5e-15 COG: PA4196; COG2197 Response regulators consisting of a CheY-like; E=3e-15 ygeK; COG2771 DNA-binding HTH domains; E=6e-07 DR0987; COG2197 Response regulators consisting of a CheY-like; E=1e-06 PFAM: PF00072; Response regulator receiver doma; E=2.4e-10 PF00196; Bacterial regulatory proteins, l; E=6.2e-20 NP_864247.1 PMID: 11823852 best DB hits: BLAST: pir:F83108; hypothetical protein PA4303 [imported] - Pseudomonas; E=0.26 gb:AAB90541.1; (AE001056) cell division inhibitor (minD-1); E=0.73 PFAM: PF00398; Ribosomal RNA adenine dimethylases; E=0.84 NP_864249.1 best DB hits: BLAST: gb:AAB36933.1; (U77780) secretory protein kinase [Chlorobium; E=1e-105 gb:AAF40195.1; AF229646_7 (AF229646) CpaF [Caulobacter crescentus]; E=2e-88 gb:AAG33866.1; AF317389_1 (AF317389) type IV NTPase; E=1e-86 COG: PA4302; COG0630 Predicted ATPases involved in pili and flagella; E=2e-79 PFAM: PF00004; ATPase associated with; E=0.16 PF01443; Viral (Superfamily 1) RNA hel; E=0.17 PF02223; Thymidylate kinase; E=0.69 NP_864250.1 PMID: 10880436 best DB hits: BLAST: gb:AAF40196.1; AF229646_8 (AF229646) TadB [Caulobacter crescentus]; E=9e-20 pir:D83108; hypothetical protein PA4301 [imported] - Pseudomonas; E=6e-11 embl:CAB92603.1; (AL356813) integral membrane protein; E=7e-06 COG: PA4301; COG2064 Predicted membrane protein; E=5e-12 NP_864251.1 PMID: 8843436 best DB hits: BLAST: pir:C83108; hypothetical protein PA4300 [imported] - Pseudomonas; E=1e-08 embl:CAB92604.1; (AL356813) integral membrane protein; E=3e-06 gb:AAK02931.1; (AE006123) TadC [Pasteurella multocida]; E=2e-04 COG: PAB1458; COG2064 Predicted membrane protein; E=6e-05 NP_864252.1 PMID: 11474104 NP_864256.1 best DB hits: BLAST: pir:T35404; probable squalene-hopene cyclase - Streptomyces; E=0.035 ddbj:BAB09653.1; (AB016881) gene_id:MXC17.10~unknown protein; E=0.073 gb:AAF80384.1; AF159949_1 (AF159949) cycloartenol synthase; E=0.79 NP_864257.1 PMID: 2670903 PMID: 10517598 best DB hits: BLAST: gb:AAC78852.1; (AF087669) ExbD [Bordetella bronchiseptica]; E=1e-06 pir:T44783; exbD protein [imported] - Bordetella pertussis -----; E=3e-06 pir:A71687; tolR protein (tolR) RP310 - Rickettsia prowazekii; E=3e-06 COG: RP310; COG0848 Biopolymer transport protein; E=4e-07 PFAM: PF02472; Biopolymer transport protein ExbD/To; E=4.1e-10 NP_864258.1 PMID: 8437515 best DB hits: BLAST: pir:D82726; conserved hypothetical protein XF1079 [imported] -; E=8e-21 pir:G83274; probable tolQ-type transport protein PA2983 [imported] -; E=4e-19 embl:CAB50918.1; (AJ243354) hypothetical protein [Pseudomonas; E=8e-16 COG: XF1079; COG0811 Biopolymer transport proteins; E=8e-22 PFAM: PF01618; MotA/TolQ/ExbB proton channel famil; E=3.1e-21 NP_864259.1 best DB hits: BLAST: pir:B81428; probable periplasmic protein Cj0114 [imported] -; E=0.62 NP_864260.1 PMID: 2104607 best DB hits: BLAST: swissprot:P15263; DEGT_BACST PLEIOTROPIC REGULATORY PROTEIN; E=2e-80 ddbj:BAA31964.1; (D64132) A porR mutant of Pophyromonas; E=3e-68 pir:D69025; pleiotropic regulatory protein DegT - Methanobacterium; E=2e-67 COG: MTH1188; COG0399 Predicted pyridoxal phosphate-dependent enzyme; E=2e-68 PFAM: PF01041; DegT/DnrJ/EryC1/StrS family; E=1.2e-146 NP_864264.1 PMID: 7492116 best DB hits: BLAST: ddbj:BAB12601.1; (AP002527) The peptide is not translated beyond; E=1e-04 gb:AAK01408.1; AF324211_1 (AF324211) site-specific tyrosine; E=2e-04 pir:C82476; site-specific recombinase IntI4 VCA0291 [imported] -; E=2e-04 COG: VCA0291; COG0582 Integrase; E=3e-05 PFAM: PF00589; Phage integrase; E=0.02 NP_864270.1 PMID: 1646375 best DB hits: BLAST: prf:2115270C; transposase [Weeksella zoohelcum]; E=1e-16 swissprot:P55631; Y4QJ_RHISN TRANSPOSASE Y4QJ -----; E=7e-11 swissprot:P24607; T801_PSESH TRANSPOSASE FOR INSERTION SEQUENCE; E=0.38 PFAM: PF01096; Transcription factor S-II (TFIIS); E=0.19 NP_864271.1 PMID: 2824781 best DB hits: BLAST: gb:AAG58100.1; AE005527_3 (AE005527) unknown protein encoded by; E=0.002 gb:AAG53987.1; AF327445_1 (AF327445) transposase A; E=0.003 gb:AAF28119.1; AF153317_15 (AF153317) InsA [Shigella; E=0.007 COG: PA1937; COG2963 Transposase; E=0.004 PFAM: PF01381; Helix-turn-helix; E=0.53 PF01527; Transposase; E=6.1e-18 NP_864272.1 PMID: 7496528 best DB hits: BLAST: gb:AAA88919.1; (U13013) ORFB [Leptospira interrogans]; E=3e-47 gb:AAA88916.1; (U13012) ORFB [Leptospira interrogans]; E=1e-46 gb:AAC05649.1; (AF038931) probable transposase-related protein; E=1e-45 COG: DRB0019.2; COG2801 transposase; E=1e-35 PFAM: PF00665; Integrase core domain; E=4.8e-40 NP_864273.1 best DB hits: BLAST: swissprot:P55631; Y4QJ_RHISN TRANSPOSASE Y4QJ -----; E=4e-14 prf:2115270C; transposase [Weeksella zoohelcum]; E=2e-10 pir:S49612; transposase - Escherichia coli; E=0.001 NP_864274.1 PMID: 9082984 best DB hits: BLAST: swissprot:P55632; Y4QK_RHISN INTEGRASERECOMBINASE Y4QK; E=5e-39 swissprot:P55429; Y4EF_RHISN INTEGRASERECOMBINASE Y4EF; E=1e-32 prf:2115270D; integrase [Weeksella zoohelcum]; E=1e-22 COG: PAB0255; COG0582 Integrase; E=3e-21 PFAM: PF02899; Phage integrase, N-terminal S; E=0.087 PF00589; Phage integrase; E=8e-31 NP_864277.1 PMID: 11792869 best DB hits: BLAST: pir:S56597; peptide N-acetyltransferase (EC 2.3.1.-) rimI -; E=0.018 swissprot:P09453; RIMI_ECOLI RIBOSOMAL-PROTEIN-ALANINE; E=0.018 pir:G69233; N-terminal acetyltransferase complex, subunit ARD1 -; E=0.043 COG: rimI; COG0456 Acetyltransferases; E=0.002 DR0188; COG0454 Histone acetyltransferase HPA2 and related; E=0.007 PFAM: PF00583; Acetyltransferase (GNAT) family; E=1e-16 NP_864279.1 PMID: 10567266 best DB hits: BLAST: pir:C75507; hypothetical protein - Deinococcus radiodurans (strain; E=0.44 NP_864282.1 PMID: 10496929 best DB hits: BLAST: gb:AAG56925.1; AE005414_2 (AE005414) IS30 transposase encoded; E=1e-10 ddbj:BAA84890.1; (AB024946) Transposase [Escherichia coli]; E=2e-10 pir:S28740; probable transposase (insertion sequence IS30) -; E=2e-10 COG: tra8_g1; COG2826 Transposase, IS30 family; E=2e-11 PFAM: PF01325; Iron dependent repressor, N-t; E=0.17 PF01381; Helix-turn-helix; E=0.086 PF01047; MarR family; E=0.42 NP_864285.1 PMID: 93315172 best DB hits: BLAST: gb:AAA37880.1; (L07921) iduronate sulfatase [Mus musculus]; E=1e-36 gb:AAA16877.1; (L13329) iduronate-2-sulfatase [Homo sapiens]; E=2e-35 gb:AAB33747.1; iduronate-2-sulfatase, IDS {EC 3.1.6.13} [human,; E=1e-34 COG: PA0031; COG3119 Arylsulfatase A and related enzymes; E=5e-29 PA1689; COG1368 Phosphoglycerol transferase and related proteins,; E=2e-04 PFAM: PF00884; Sulfatase; E=1.4e-18 NP_864287.1 PMID: 7610040 best DB hits: BLAST: swissprot:Q58707; YD11_METJA HYPOTHETICAL PROTEIN MJ1311 -----; E=0.004 swissprot:P39305; SGAU_ECOLI HEXULOSE-6-PHOSPHATE; E=0.004 gb:AAG59393.1; AE005652_10 (AE005652) ; E=0.004 COG: MJ1311; COG1082 Predicted endonucleases; E=4e-04 PFAM: PF02199; Saposin A-type domain; E=0.63 NP_864289.1 PMID: 8905231 best DB hits: BLAST: pir:S77552; Mg2+ transport protein - Synechocystis sp. (strain PCC; E=8e-53 pir:B71265; probable Mg2+ transport protein (mgtE) - syphilis; E=2e-51 pir:G72287; hypothetical protein TM1161 - Thermotoga maritima; E=4e-49 COG: slr1216; COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain); E=7e-54 MTH855_2; COG0517 CBS domains; E=7e-09 PFAM: PF00571; CBS domain; E=0.0001 PF01769; Divalent cation transporter; E=6.8e-26 NP_864291.1 best DB hits: BLAST: pir:C82554; conserved hypothetical protein XF2474 [imported] -; E=7e-72 gb:AAG59345.1; AE005648_7 (AE005648) orf, hypothetical protein; E=4e-70 swissprot:P39280; YJEK_ECOLI HYPOTHETICAL 38.7 KD PROTEIN IN; E=1e-67 COG: XF2474; COG1509 Lysine 2,3-aminomutase; E=7e-73 PFAM: PF02587; Uncharacterized ACR, YjeK family COG; E=6e-109 NP_864292.1 PMID: 9403685 best DB hits: BLAST: pir:H70193; membrane spanning protein homolog - Lyme disease; E=6e-04 gb:AAD39630.1; AF033858_13 (AF033858) ABC transporter; E=0.074 pir:D69049; conserved hypothetical protein MTH1371 -; E=0.15 COG: BB0753; COG1277 Permease component of an ABC-transporter; E=5e-05 NP_864293.1 PMID: 3531172 best DB hits: BLAST: swissprot:P05149; GALM_ACICA ALDOSE 1-EPIMERASE PRECURSOR; E=4e-63 embl:CAB62739.1; (AL133423) aldose 1-epimerase; E=3e-62 pir:H72395; probable aldose 1-epimerase (EC 5.1.3.3) - Thermotoga; E=5e-62 COG: TM0282; COG2017 Galactose mutarotase and related enzymes; E=4e-63 PFAM: PF01263; Aldose 1-epimerase; E=1.4e-102 NP_864297.1 PMID: 7793970 best DB hits: BLAST: pir:S66261; X-Pro dipeptidyl-peptidase (EC 3.4.14.11) -; E=6e-59 ddbj:BAA28265.1; (AB008194) DPP IV [Porphyromonas gingivalis]; E=2e-54 gb:AAC46184.1; (AF026511) dipeptidyl peptidase IV [Porphyromonas; E=7e-54 COG: YHR028c; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; E=2e-30 BH0879; COG2267 Lysophospholipase; E=0.002 PH0863; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; E=0.002 PFAM: PF00930; Dipeptidyl peptidase IV (DPP IV); E=5.3e-44 PF00326; Prolyl oligopeptidase; E=0.84 NP_864299.1 PMID: 6352260 PMID: 2211531 best DB hits: BLAST: pir:A82753; dihydrolipoamide dehydrogenase XF0868 [imported] -; E=1e-102 swissprot:O50286; DLDH_VIBPA DIHYDROLIPOAMIDE DEHYDROGENASE (E3; E=1e-102 swissprot:P00391; DLDH_ECOLI DIHYDROLIPOAMIDE DEHYDROGENASE (E3; E=1e-101 COG: XF0868_2; COG1249 Dihydrolipoamide dehydrogenase/glutathione; E=1e-103 PFAM: PF02032; Phytoene dehydrogenase related; E=0.00021 PF00070; Pyridine nucleotide-disulphide; E=2.6e-75 PF02852; Pyridine nucleotide-disulphide; E=8.6e-41 NP_864301.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination NP_864302.1 PMID: 10192928 best DB hits: BLAST: ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=1e-11 gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=2e-10 pir:G72391; conserved hypothetical protein - Thermotoga maritima; E=6e-08 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=1e-12 PFAM: PF01408; Oxidoreductase, NAD-bindi; E=9.8e-25 NP_864304.1 PMID: 9753770 best DB hits: BLAST: gb:AAC36151.1; (U58977) Notch homolog Scalloped wings [Lucilia; E=0.30 NP_864306.1 best DB hits: BLAST: embl:CAB94634.1; (AL359215) secreted glycosyl hydrolase.; E=0.005 pir:D83161; hypothetical protein PA3885 [imported] - Pseudomonas; E=0.010 pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=0.37 COG: PA3885; COG2365 Protein tyrosine/serine phosphatase; E=0.001 PFAM: PF00239; Resolvase class of site-specific re; E=0.14 NP_864308.1 PMID: 7476193 best DB hits: BLAST: pir:S76626; ABC-type transport protein sll0489 - Synechocystis sp.; E=2e-52 pir:A83142; probable ATP-binding component of ABC transporter PA4037; E=6e-50 pir:T44443; gliding motility protein [imported] - Flavobacterium; E=1e-49 COG: sll0489; COG1131 ABC-type multidrug transport system, ATPase; E=2e-53 ybhF; COG1131 ABC-type multidrug transport system, ATPase component; E=1e-33 VNG1893G; COG1131 ABC-type multidrug transport system, ATPase; E=2e-33 PFAM: PF00005; ABC transporter; E=9.2e-47 NP_864309.1 PMID: 10984043 best DB hits: BLAST: pir:B83188; probable permease of ABC transporter PA3671 [imported] -; E=7e-21 pir:B83142; hypothetical protein PA4038 [imported] - Pseudomonas; E=3e-17 pir:H70193; membrane spanning protein homolog - Lyme disease; E=1e-12 COG: PA3671; COG1277 Permease component of an ABC-transporter; E=6e-22 PA4039; COG3225 Uncharacterized BCR; E=1e-04 PH1531; COG1668 ATP-dependent Na+ efflux pump membrane component; E=0.002 NP_864310.1 best DB hits: BLAST: pir:H83187; hypothetical protein PA3669 [imported] - Pseudomonas; E=0.14 NP_864314.1 PMID: 10470850 best DB hits: BLAST: ddbj:BAB09588.1; (AB018118) gene_id:MRI1.6~pir D64592~similar to; E=1e-46 NP_864318.1 PMID: 3316192 best DB hits: BLAST: pir:F83561; probable DNA polymerase alpha chain PA0669 [imported] -; E=0.0 pir:A70972; probable DNA polymerase III alpha chain - Mycobacterium; E=1e-176 swissprot:O34623; DP3A_BACSU DNA POLYMERASE III, ALPHA CHAIN -----; E=1e-108 COG: PA0669; COG0587 DNA polymerase III alpha subunit; E=0.0 PFAM: PF02231; PHP domain N-terminal region; E=3.3e-19 PF01336; OB-fold nucleic acid binding domain; E=6.8e-05 NP_864319.1 PMID: 8355615 best DB hits: BLAST: pir:C72038; conserved hypothetical protein CP1104 [imported] -; E=1e-31 swissprot:P45672; NIR3_AZOBR NIFR3-LIKE PROTEIN ----- pir:; E=2e-31 pir:A81750; NifR3Smm1 family protein TC0013 [imported] - Chlamydia; E=1e-30 COG: CPn0768; COG0042 Predicted TIM-barrel enzymes, possibly; E=1e-32 yhdG; COG0042 Predicted TIM-barrel enzymes, possibly dehydrogenases,; E=1e-23 Cj0123c; COG0042 Predicted TIM-barrel enzymes, possibly; E=8e-23 PFAM: PF01207; Uncharacterized protein famil; E=5.7e-62 NP_864322.1 PMID: 9634230 best DB hits: BLAST: pir:G70790; probable transcriptional regulator Rv3678c - Mycobacterium; E=5e-20 pir:T36560; hypothetical protein SCH17.09c - Streptomyces coelicolor; E=6e-18 embl:CAB62819.1; (AL133436) hypothetical protein L7276.02; E=4e-17 COG: Rv3678c; COG0251 translation initiation inhibitor; E=5e-21 PFAM: PF01042; YjgF family; E=0.22 NP_864324.1 PMID: 10360571 best DB hits: BLAST: pir:D72379; hypothetical protein TM0428 - Thermotoga maritima; E=5e-56 pir:H75303; probable NADH-dependent flavin oxidoreductase -; E=3e-11 ddbj:BAB05200.1; (AP001512) NADH oxidase [Bacillus halodurans]; E=4e-09 COG: TM0428; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme; E=4e-57 nemA; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family; E=3e-08 PA2932; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme; E=6e-08 PFAM: PF00724; NADH:flavin oxidoreductase / NAD; E=2.5e-08 NP_864328.1 best DB hits: BLAST: gb:AAF35906.1; AF232672_1 (AF232672) FK506-binding protein; E=7e-06 pir:A83180; probable peptidyl-prolyl cis-trans isomerase,; E=3e-04 prf:2204313A; FK506-binding protein 65kD [Mus musculus]; E=9e-04 COG: PA3717; COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1; E=3e-05 PFAM: PF00254; FKBP-type peptidyl-prolyl cis-trans; E=6.8e-10 NP_864329.1 PMID: 10747959 NP_864330.1 PMID: 8108379 PMID: 9665876 best DB hits: BLAST: pir:H71274; probable ankyrin - syphilis spirochete ----- gb:; E=0.37 gb:AAF49554.1; (AE003529) CG6017 gene product [Drosophila; E=0.43 gb:AAC26848.1; (AF049612) huntingtin interacting protein HYPH; E=0.45 PFAM: PF00023; Ank repeat; E=0.052 NP_864331.1 PMID: 10708371 best DB hits: BLAST: gb:AAG55028.1; AE005248_9 (AE005248) receptor; E=4e-62 swissprot:P28917; YDCC_ECOLI H REPEAT-ASSOCIATED PROTEIN IN; E=5e-62 gb:AAG54539.1; AE005200_1 (AE005200) Z0271 gene product; E=9e-62 PFAM: PF01811; Transposase; E=5.2e-67 NP_864332.1 PMID: 10731132 PMID: 8108379 best DB hits: BLAST: gb:AAF49247.1; (AE003519) CG6896 gene product [Drosophila; E=9e-06 gb:AAF49547.1; (AE003528) CG5891 gene product [Drosophila; E=2e-04 gb:AAB86895.1; (AF034547) protein phosphatase M130 myosin; E=0.006 PFAM: PF00023; Ank repeat; E=5.1e-06 NP_864343.1 PMID: 2263648 best DB hits: BLAST: gb:AAF63149.1; AC011001_19 (AC011001) Similar to phytoene; E=1e-09 swissprot:P22871; CRTI_ERWHE PHYTOENE DEHYDROGENASE (PHYTOENE; E=4e-05 gb:AAA64981.1; (M87280) phytoene dehydrogenase [Erwinia; E=4e-05 COG: BH1848; COG1233 Phytoene dehydrogenase and related proteins; E=6e-06 PFAM: PF01134; Glucose inhibited division prot; E=0.017 PF01593; Flavin containing amine oxidase; E=0.08 PF00732; GMC oxidoreductases; E=0.049 NP_864344.1 PMID: 2229036 best DB hits: BLAST: pir:B72334; ABC transporter ATP-binding protein - Thermotoga; E=8e-34 gb:AAG19180.1; (AE005015) ABC transporter ATP-binding protein; E=4e-33 embl:CAC11214.1; (AL445063) gliding motility protein (gldA); E=5e-33 COG: TM0793; COG1131 ABC-type multidrug transport system, ATPase; E=8e-35 ybhF; COG1131 ABC-type multidrug transport system, ATPase component; E=1e-26 PFAM: PF00448; SRP54-type protein, GTPase do; E=0.0013 PF00005; ABC transporter; E=6.1e-52 NP_864346.1 best DB hits: PFAM: PF00672; HAMP domain; E=0.45 NP_864347.1 catalyzes the formation of 2-isopropylmalate from 1-methyl-2-oxobutanoate and acetyl-CoA NP_864348.1 PMID: 3275660 best DB hits: BLAST: swissprot:Q55522; SYV_SYNY3 VALYL-TRNA SYNTHETASE (VALINE--TRNA; E=0.0 swissprot:Q05873; SYV_BACSU VALYL-TRNA SYNTHETASE (VALINE--TRNA; E=0.0 pir:SYBSVS; valine--tRNA ligase (EC 6.1.1.9) - Bacillus; E=0.0 COG: slr0557; COG0525 Valyl-tRNA synthetase; E=0.0 PFAM: PF00133; tRNA synthetases class I (I, L, M; E=5.3e-75 NP_864349.1 PMID: 7952186 best DB hits: BLAST: pir:T35673; probable transcription repressor - Streptomyces; E=2e-13 ddbj:BAB04813.1; (AP001510) transcriptional repressor of the; E=1e-12 ddbj:BAB04516.1; (AP001509) glucose kinase [Bacillus halodurans]; E=5e-11 COG: BH1094; COG1940 Transcriptional regulators; E=1e-13 PFAM: PF00370; FGGY family of carbohydrate kinases,; E=0.8 PF00480; ROK family; E=3.6e-25 NP_864351.1 PMID: 9529885 best DB hits: BLAST: pir:A83308; probable MFS transporter PA2701 [imported] - Pseudomonas; E=1e-60 pir:T50939; DitE protein [imported] - Pseudomonas abietaniphila; E=4e-46 pir:H83212; conserved hypothetical protein PA3465 [imported] -; E=1e-42 COG: PA2701; COG0477 Permeases of the major facilitator superfamily; E=1e-61 NP_864353.1 PMID: 2229036 best DB hits: BLAST: pir:S76626; ABC-type transport protein sll0489 - Synechocystis sp.; E=2e-36 gb:AAK06094.1; AE006429_12 (AE006429) ABC transporter ATP binding; E=8e-33 gb:AAG19180.1; (AE005015) ABC transporter ATP-binding protein; E=1e-32 COG: sll0489; COG1131 ABC-type multidrug transport system, ATPase; E=2e-37 PFAM: PF00448; SRP54-type protein, GTPase domai; E=0.041 PF00693; Thymidine kinase from herpesviru; E=0.88 PF01078; Magnesium chelatase, subunit Chl; E=0.8 NP_864355.1 PMID: 8759852 best DB hits: BLAST: gb:AAC77833.1; (U38473) outer membrane lipoprotein; E=2e-07 gb:AAG24804.1; (AF285085) outer membrane lipoprotein; E=4e-07 swissprot:P76388; WZA_ECOLI POLYSACCHARIDE EXPORT PROTEIN; E=5e-07 COG: wza; COG1596 Periplasmic protein involved in polysaccharide export; E=5e-08 aq_505; COG1596 Periplasmic protein involved in polysaccharide; E=5e-06 NP_864356.1 best DB hits: BLAST: embl:CAB96707.1; (AL360354) vir18, transmembrane; E=0.059 NP_864359.1 best DB hits: PFAM: PF00036; EF hand; E=0.16 NP_864362.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus NP_864363.1 PMID: 1597417 best DB hits: BLAST: swissprot:P74891; SSAS_SALTY SECRETION SYSTEM APPARATUS PROTEIN; E=3e-04 pir:H81264; flagellar biosynthetic protein Cj1675 [imported] -; E=6e-04 swissprot:P35535; FLIQ_BACSU FLAGELLAR BIOSYNTHETIC PROTEIN FLIQ; E=7e-04 COG: Cj1675; COG1987 Flagellar biosynthesis/type III secretory pathway; E=6e-05 PFAM: PF01313; Bacterial export proteins, famil; E=4.1e-26 NP_864364.1 PMID: 9683497 best DB hits: BLAST: gb:AAC32324.1; (AF044580) flagellar protein FliR [Rhodobacter; E=1e-14 pir:B83465; flagellar biosynthetic protein FliR PA1448 [imported] -; E=2e-13 pir:E81323; flagellar biosynthetic protein Cj1179c [imported] -; E=4e-12 COG: PA1448; COG1684 Flagellar biosynthesis/type III secretory pathway; E=2e-14 PFAM: PF01311; Bacterial export proteins, fami; E=7.9e-32 NP_864365.1 PMID: 8299954 best DB hits: BLAST: pir:I40395; flagellar biosynthetic protein FlhB - Bacillus subtilis; E=7e-51 swissprot:P35538; FLHB_BACSU FLAGELLAR BIOSYNTHETIC PROTEIN FLHB; E=7e-51 pir:D72319; flagellar biosynthetic protein flhB TM0909 - Thermotoga; E=6e-46 COG: BS_flhB; COG1377 Flagellar biosynthesis/type III secretory pathway; E=6e-52 TM1672; COG2257 Uncharacterized BCR homologous to the cytoplasmic; E=9e-10 PFAM: PF01312; FlhB HrpN YscU SpaS Family; E=1.4e-91 NP_864366.1 PMID: 10910347 best DB hits: BLAST: pir:A82607; hypothetical protein XF2023 [imported] - Xylella; E=4e-26 NP_864369.1 PMID: 9428682 best DB hits: BLAST: pir:T44945; hypothetical protein 6 [imported] - Natronobacterium; E=7e-14 swissprot:Q9RTP8; MNTH_DEIRA PROBABLE MANGANESE TRANSPORT PROTEIN; E=7e-08 swissprot:Q9RPF4; MNTH_SALTY MANGANESE TRANSPORT PROTEIN MNTH; E=9e-05 COG: DR1709; COG1914 Mn2+ and Fe2+ transporters of the NRAMP family; E=7e-09 PFAM: PF00122; E1-E2 ATPase; E=0.38 PF01566; Natural resistance-associated ma; E=0.00088 NP_864370.2 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate NP_864371.1 PMID: 9634230 best DB hits: BLAST: pir:C70845; probable nagA protein - Mycobacterium tuberculosis; E=8e-23 embl:CAB93044.1; (AL357432) deacetylase [Streptomyces; E=2e-19 swissprot:O34450; NAGA_BACSU N-ACETYLGLUCOSAMINE-6-PHOSPHATE; E=5e-18 COG: Rv3332; COG1820 N-acetylglucosamine-6-phosphate deacetylase; E=7e-24 PFAM: PF02612; N-acetylglucosamine-6-phosphate deac; E=5.6e-05 NP_864372.1 PMID: 10984043 best DB hits: BLAST: pir:H70302; conserved hypothetical protein aq_035 - Aquifex aeolicus; E=2e-26 pir:A71678; probable response regulatory protein RP237 - Rickettsia; E=5e-21 pir:G82209; GGDEF family protein VC1353 [imported] - Vibrio cholerae; E=8e-21 COG: aq_035_2; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=2e-27 PFAM: PF00990; GGDEF domain; E=2.6e-46 NP_864373.1 PMID: 11208782 best DB hits: BLAST: gb:AAB93540.1; (AF016923) ADP-glucose pyrophosphorylase [Thermus; E=1e-103 pir:C82428; glucose-1-phosphate adenylyltransferase VCA0699; E=1e-102 embl:CAC17471.1; (AJ291603) ADP glucose pyrophosphorylase; E=9e-99 COG: VCA0699; COG0448 ADP-glucose pyrophosphorylase; E=1e-103 MTH1759; COG1208 Nucleoside-diphosphate-sugar pyrophosphorylases; E=9e-20 BH1086; COG0448 ADP-glucose pyrophosphorylase; E=3e-14 PFAM: PF00483; Nucleotidyl transferase; E=5.7e-74 NP_864374.1 PMID: 10684935 best DB hits: BLAST: swissprot:P18584; DEGP_CHLTR PROBABLE SERINE PROTEASE DO-LIKE; E=1e-63 pir:B81728; serine proteinase, HtrADegQ/DegS family TC0210; E=3e-63 embl:CAA72164.1; (Y11304) ORF E0 [Rhodobacter capsulatus]; E=5e-62 COG: CT823; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=1e-64 CPn0979; COG0265 Trypsin-like serine proteases, typically; E=5e-63 htrA; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=3e-57 PFAM: PF02874; ATP synthase alpha/beta family,; E=0.027 PF00089; Trypsin; E=9.8e-30 PF00595; PDZ domain (Also known as DHR o; E=1e-10 NP_864377.1 PMID: 10473410 best DB hits: BLAST: gb:AAC23578.1; (AF070715) alanine dehydrogenase [Shewanella sp.; E=2e-97 pir:JE0388; alanine dehydrogenase (EC 1.4.1.1) - Enterobacter; E=1e-96 swissprot:P30234; DHA_MYCTU ALANINE DEHYDROGENASE (40 KDA ANTIGEN); E=5e-96 COG: Rv2780; COG0686 Alanine dehydrogenase; E=5e-97 pntA; COG3288 NAD/NADP transhydrogenase alpha subunit; E=4e-21 PFAM: PF01262; Alanine dehydrogenase/pyridine nucl; E=1.6e-147 NP_864378.1 best DB hits: PFAM: PF00884; Sulfatase; E=0.0012 NP_864379.1 PMID: 8905231 best DB hits: BLAST: pir:S74482; UDP-N-acetyl-D-mannosaminuronic acid transferase rffM-1; E=3e-32 embl:CAB92959.1; (AJ401026) hypothetical protein; E=2e-28 prf:2211258F; cpsF gene [Streptococcus pneumoniae]; E=1e-24 COG: slr1118; COG1922 Teichoic acid biosynthesis proteins; E=3e-33 NP_864380.1 PMID: 9384377 best DB hits: BLAST: pir:E69990; proteinase IV homolog yteI - Bacillus subtilis -----; E=1e-21 pir:F69207; proteinase IV - Methanobacterium thermoautotrophicum; E=1e-18 ddbj:BAB06917.1; (AP001518) proteinase IV [Bacillus halodurans]; E=3e-17 COG: BS_yteI; COG0616 Periplasmic serine proteases (ClpP class); E=1e-22 PFAM: PF01343; Peptidase U7; E=3e-18 NP_864382.1 best DB hits: BLAST: gb:AAF82144.1; AC034256_8 (AC034256) Contains similarity to F-box; E=0.004 ddbj:BAB21785.1; (AB051481) KIAA1694 protein [Homo sapiens]; E=0.061 embl:CAB95328.1; (AL359782) possible adenylate cyclase; E=0.096 NP_864383.1 PMID: 11759840 PMID: 11016950 best DB hits: BLAST: gb:AAG19745.1; (AE005060) deoxyhypusine synthase; Dhs; E=4e-07 gb:AAB88953.1; (AE000945) deoxyhypusine synthase (dys1-2); E=1e-05 embl:CAB65461.1; (AJ238622) deoxyhypusine synthase [Senecio; E=3e-05 COG: VNG1432G; COG1899 Deoxyhypusine synthase; E=4e-08 PFAM: PF01916; Deoxyhypusine synthase; E=0.57 NP_864385.1 PMID: 10984043 best DB hits: BLAST: pir:G83627; probable nucleoside hydrolase PA0143 [imported] -; E=0.062 COG: PA0143; COG1957 Inosine-uridine nucleoside N-ribohydrolase; E=0.006 PFAM: PF01156; Inosine-uridine preferring nucle; E=0.52 NP_864388.1 PMID: 11206551 best DB hits: BLAST: swissprot:Q10403; YM16_MYCTU HYPOTHETICAL 31.7 KDA PROTEIN RV2216; E=9e-44 swissprot:P77775; YFCH_ECOLI HYPOTHETICAL 32.7 KDA PROTEIN IN; E=2e-42 gb:AAG57433.1; AE005462_8 (AE005462) sugar nucleotide; E=4e-42 COG: Rv2216; COG1090 Predicted nucleoside-diphosphate sugar epimerases; E=8e-45 NP_864389.1 PMID: 10548737 best DB hits: BLAST: ddbj:BAA84590.1; (AB003084) RNA polymerase sigma 70 [Helicobacter; E=1e-14 swissprot:Q9ZMY3; RPSD_HELPJ RNA POLYMERASE SIGMA FACTOR RPOD; E=2e-14 gb:AAB81010.1; (U83703) RNA polymerase principal sigma factor; E=2e-14 COG: jhp0081; COG0568 DNA-directed RNA polymerase sigma subunits; E=1e-15 PFAM: PF00140; Sigma-70 factor; E=8.8e-19 NP_864391.1 PMID: 8843436 best DB hits: BLAST: embl:CAB56371.1; (AL118514) DNA-binding protein; E=0.089 embl:CAC22757.1; (AL512944) hypothetical protein SC8D11.40; E=0.48 gb:AAD14631.1; (AF102623) trimethylamine corrinoid protein MttC; E=0.64 PFAM: PF02310; B12 binding domain; E=0.11 NP_864392.1 PMID: 10360571 best DB hits: BLAST: pir:H72222; conserved hypothetical protein - Thermotoga maritima; E=2e-04 COG: TM1686; COG1376 Uncharacterized ACR; E=2e-05 PFAM: PF01476; LysM domain; E=3.9e-07 NP_864395.1 PMID: 10360571 best DB hits: BLAST: pir:B72292; hypothetical protein TM1117 - Thermotoga maritima; E=4e-24 pir:C83561; probable type II secretion system protein PA0685; E=8e-22 pir:S32858; outD protein - Erwinia carotovora ----- embl:; E=1e-18 COG: TM1117; COG1450 General secretory pathway protein D; E=4e-25 PFAM: PF00263; Bacterial type II and III secr; E=1.7e-25 NP_864397.1 PMID: 10761919 best DB hits: BLAST: pir:H81878; probable dihydrodipicolinate synthase (EC 4.2.1.52); E=2e-08 pir:D81141; dihydrodipicolinate synthase NMB0929 [imported] -; E=3e-08 pir:D83488; probable dihydrodipicolinate synthetase PA1254; E=7e-07 COG: NMB0929; COG0329 Dihydrodipicolinate synthetase/N-acetylneuraminate; E=3e-09 PFAM: PF00701; Dihydrodipicolinate synthetase f; E=9.1e-05 NP_864398.1 PMID: 8626508 best DB hits: BLAST: swissprot:P56160; YHEB_CHLVI HYPOTHETICAL 28.2 KD PROTEIN IN HEMB; E=5e-37 pir:B70646; probable monophosphatase - Mycobacterium tuberculosis; E=4e-34 embl:CAB94593.1; (AL359214) monophosphatase; E=2e-33 COG: Rv3137; COG0483 Archaeal fructose-1,6-bisphosphatase and related; E=4e-35 VC2722; COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS); E=2e-13 VC0745; COG0483 Archaeal fructose-1,6-bisphosphatase and related; E=3e-12 PFAM: PF00459; Inositol monophosphatase; E=6.9e-53 NP_864400.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_864403.1 best DB hits: PFAM: PF01595; Domain of unknown function DUF21; E=0.59 NP_864404.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport NP_864406.1 PMID: 1470679 best DB hits: BLAST: embl:CAC14148.1; (AJ245399) NADH-ubiquinone; E=4e-80 gb:AAG19079.1; (AE005006) Vng0562c [Halobacterium sp. NRC-1]; E=4e-57 pir:F71683; NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain L2; E=7e-31 COG: VNG0562C; COG0651 Formate hydrogenlyase subunit 3; E=3e-58 RP283; COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L); E=7e-32 BH1316; COG0651 Formate hydrogenlyase subunit 3; E=2e-22 PFAM: PF00662; NADH-Ubiquinone oxidoreductase; E=0.69 PF00361; NADH-Ubiquinone/plastoquinone (; E=2.6e-49 NP_864407.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone NP_864408.1 PMID: 11016950 best DB hits: BLAST: gb:AAG19081.1; (AE005007) Vng0565c [Halobacterium sp. NRC-1]; E=5e-11 pir:H71683; hypothetical protein RP285 - Rickettsia prowazekii; E=9e-09 pir:E75113; long hypothetical protein PAB0488 - Pyrococcus abyssi; E=5e-07 COG: VNG0565C; COG1006 Multisubunit Na+/H+ antiporter; E=4e-12 PFAM: PF01898; Protein of unknown function DUF67; E=1.9e-11 NP_864409.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali NP_864410.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali NP_864411.1 PMID: 9679194 PMID: 11016950 best DB hits: BLAST: swissprot:O58672; Y944_PYRHO HYPOTHETICAL PROTEIN PH0944 -----; E=0.052 pir:C75465; conserved hypothetical protein - Deinococcus radiodurans; E=0.13 pir:F75101; hypothetical protein PAB0803 - Pyrococcus abyssi; E=0.67 COG: PH0944; COG1320 Multisubunit Na+/H+ antiporter; E=0.005 NP_864412.1 PMID: 10952301 best DB hits: BLAST: pir:F82494; conserved hypothetical protein VCA0153 [imported] -; E=5e-05 gb:AAF21817.1; AF097740_6 (AF097740) multiple resistance and pH; E=7e-04 ddbj:BAB05033.1; (AP001511) Na+H+ antiporter [Bacillus; E=0.004 COG: VCA0153; COG2212 Multisubunit Na+/H+ antiporter, MnhF subunit; E=4e-06 NP_864413.1 PMID: 10360571 best DB hits: BLAST: pir:C72280; conserved hypothetical protein - Thermotoga maritima; E=8e-09 pir:A71726; hypothetical protein RP156 - Rickettsia prowazekii; E=3e-08 pir:A75113; hypothetical protein PAB0485 - Pyrococcus abyssi (strain; E=8e-08 COG: TM1205; COG1863 Multisubunit Na+/H+ antiporter; E=8e-10 PFAM: PF01899; Protein of unknown function DUF68; E=1.9e-09 NP_864415.1 PMID: 10567266 best DB hits: BLAST: pir:C75341; tetratricopeptide repeat family protein - Deinococcus; E=9e-05 ddbj:BAA11643.2; (D82942) tetratricopeptide-repeat protein; E=1e-04 pir:E69078; conserved hypothetical protein MTH1585 -; E=0.006 COG: DR1891; COG0457 TPR-repeat-containing proteins; E=9e-06 NP_864418.1 PMID: 9371463 PMID: 11677609 best DB hits: BLAST: gb:AAG31169.1; (AF314961) unknown [Salmonella typhimurium]; E=0.043 gb:AAB89850.1; (AE001008) conserved hypothetical protein; E=0.049 pir:A82284; conserved hypothetical protein VC0762 [imported] -; E=0.13 COG: AF1399; COG1520 Uncharacterized proteins of WD40-like repeat family; E=0.005 PFAM: PF01011; PQQ enzyme repeat; E=5.4e-05 NP_864420.1 PMID: 7542800 best DB hits: BLAST: swissprot:P45043; XYLR_HAEIN XYLOSE OPERON REGULATORY PROTEIN; E=8e-37 swissprot:P37390; XYLR_ECOLI XYLOSE OPERON REGULATORY PROTEIN; E=1e-34 ddbj:BAB03212.1; (AB046360) xylose operon regulatory; E=6e-32 COG: HI1106_1; COG1609 Transcriptional regulators; E=3e-17 xylR_2; COG2207 AraC-type DNA-binding domain-containing proteins; E=2e-16 xylR_1; COG1609 Transcriptional regulators; E=1e-13 PFAM: PF00165; Bacterial regulatory helix-turn-heli; E=3.1e-17 NP_864421.1 PMID: 10699374 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=6e-33 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=3e-32 swissprot:P50428; ARSA_MOUSE ARYLSULFATASE A PRECURSOR (ASA); E=5e-29 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=7e-26 PAB0793; COG2194 Predicted membrane-associated, metal-dependent; E=3e-05 Rv3077; COG3119 Arylsulfatase A and related enzymes; E=0.001 PFAM: PF00884; Sulfatase; E=3.8e-40 NP_864424.1 PMID: 8969502 best DB hits: BLAST: ddbj:BAA06427.1; (D30762) unknown [Bacillus subtilis]; E=0.084 swissprot:P42401; YCKC_BACSU HYPOTHETICAL 17.0 KD PROTEIN IN COMJ; E=0.084 COG: BS_yckC; COG1714 Uncharacterized membrane protein/domain; E=0.008 NP_864427.1 PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=9e-28 swissprot:P50473; ARS_STRPU ARYLSULFATASE PRECURSOR (ARYL-SULFATE; E=4e-26 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=6e-26 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=2e-17 PFAM: PF00884; Sulfatase; E=2.3e-39 NP_864428.1 best DB hits: BLAST: gb:AAF87662.1; AF223645_1 (AF223645) lipase [uncultured bacterium]; E=0.54 PFAM: PF01738; Dienelactone hydrolase; E=0.00062 NP_864429.1 best DB hits: PFAM: PF02018; Cellulose binding domain; E=0.61 NP_864432.1 PMID: 1427856 best DB hits: BLAST: swissprot:P33727; ARSB_FELCA ARYLSULFATASE B PRECURSOR (ASB); E=2e-47 pdb:1FSU; 4-Sulfatase (Human); E=3e-47 gb:AAA51779.1; (M32373) arylsulfatase B precursor [Homo sapiens]; E=4e-47 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=2e-31 PFAM: PF00884; Sulfatase; E=3.6e-76 NP_864434.1 PMID: 7744061 best DB hits: BLAST: swissprot:P51691; ARS_PSEAE ARYLSULFATASE (ARYL-SULFATE; E=1e-39 pir:S69336; arylsulfatase (EC 3.1.6.1) - Pseudomonas aeruginosa; E=3e-39 embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=2e-35 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=9e-41 PFAM: PF00884; Sulfatase; E=1.3e-43 NP_864436.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate NP_864437.1 PMID: 10984043 best DB hits: BLAST: pir:E83580; conserved hypothetical protein PA0529 [imported] -; E=1e-34 pir:A69811; conserved hypothetical protein yflK - Bacillus subtilis; E=4e-32 pir:F83366; conserved hypothetical protein PA2229 [imported] -; E=2e-31 COG: PA0529; COG2258 Uncharacterized BCR; E=1e-35 NP_864438.1 PMID: 10567266 best DB hits: BLAST: gb:AAF12583.1; AE001826_52 (AE001826) sensor histidine; E=4e-09 pir:D75429; sensory box sensor histidine kinase - Deinococcus; E=5e-09 pir:A69158; sensory transduction histidine kinase - Methanobacterium; E=6e-08 COG: DRB0029_2; COG0642 Sensory transduction histidine kinases; E=4e-10 PFAM: PF02518; Histidine kinase-, DNA gyrase B-, p; E=6.3e-13 NP_864439.1 PMID: 9537320 best DB hits: BLAST: pir:F70423; DNA polymerase beta family - Aquifex aeolicus -----; E=1e-110 ddbj:BAB06826.1; (AP001517) DNA-dependent DNA polymerase beta; E=1e-105 pir:C69985; probable DNA-dependent DNA polymerase beta chain yshC -; E=1e-102 COG: aq_1422_1; COG1796 DNA polymerase IV (family X); E=4e-62 BH3107_2; COG1387 Histidinol phosphatase and related hydrolases of; E=4e-53 Ta0758_1; COG1796 DNA polymerase IV (family X); E=3e-51 PFAM: PF00966; DNA polymerase X family; E=6.5e-35 PF02231; PHP domain N-terminal region; E=1.3e-22 PF02811; PHP domain C-terminal region; E=1.6e-16 NP_864440.1 PMID: 10761919 best DB hits: BLAST: pir:D81801; conserved hypothetical protein NMA1764 [imported] -; E=2e-09 pir:G81066; conserved hypothetical protein NMB1575 [imported] -; E=2e-09 pir:F83200; conserved hypothetical protein PA3566 [imported] -; E=3e-07 COG: NMB1575; COG1359 Uncharacterized ACR; E=2e-10 PFAM: PF02619; Uncharacterized ACR, YneC family COG; E=1.7e-17 NP_864441.1 PMID: 8843436 best DB hits: BLAST: embl:CAB93736.1; (AL357613) thioredoxin reductase.; E=2e-67 pir:H72322; thioredoxin reductase - Thermotoga maritima (strain; E=2e-27 ddbj:BAB07290.1; (AP001519) thioredoxin reductase (NADPH); E=1e-26 COG: TM0869; COG0492 Thioredoxin reductase/alkyl hydroperoxide reductase; E=2e-28 VNG1259G; COG0492 Thioredoxin reductase/alkyl hydroperoxide; E=1e-21 aq_500; COG0492 Thioredoxin reductase/alkyl hydroperoxide reductase; E=1e-20 PFAM: PF00027; Cyclic nucleotide-binding domai; E=1.6e-07 PF00732; GMC oxidoreductases; E=0.87 PF01946; Thi4 family; E=0.0023 NP_864445.1 best DB hits: BLAST: pir:T34965; probable membrane protein - Streptomyces coelicolor; E=2e-09 gb:AAB06263.1; (L39876) ORF1; PepX [Caldicellulosiruptor; E=4e-04 pir:E75460; conserved hypothetical protein - Deinococcus radiodurans; E=0.002 COG: DR0919; COG1721 Uncharacterized ACR; E=2e-04 PFAM: PF01882; Protein of unknown function DUF58; E=7.1e-20 NP_864446.1 PMID: 10484179 best DB hits: BLAST: ddbj:BAB04323.1; (AP001509) methanol dehydrogenase regulatory; E=4e-87 pir:T34964; probable regulatory protein - Streptomyces coelicolor; E=6e-81 pir:H72289; hypothetical protein TM1132 - Thermotoga maritima; E=1e-80 COG: BH0604; COG0714 MoxR-like ATPases; E=4e-88 PFAM: PF00004; ATPase associated with va; E=4.6e-05 PF01078; Magnesium chelatase, subunit Chl; E=8e-14 NP_864448.1 PMID: 10524254 PMID: 12004073 best DB hits: BLAST: gb:AAF61932.1; (AF230804) sigma-54 activator protein Act1; E=1e-07 swissprot:Q00934; PILR_PSEAE TYPE 4 FIMBRIAE EXPRESSION REGULATORY; E=1e-06 pir:B70195; response regulatory protein (rrp-2) homolog - Lyme; E=1e-06 COG: PA4547; COG2204 AAA superfamily ATPases with N-terminal receiver; E=1e-07 BH1808; COG0745 Response regulators consisting of a CheY-like; E=6e-07 DRB0029_1; COG0784 CheY-like receiver domains; E=3e-06 PFAM: PF00072; Response regulator receiver doma; E=4.3e-14 NP_864450.1 PMID: 10910347 best DB hits: BLAST: swissprot:Q9PH56; MIAA_XYLFA TRNA; E=1e-44 swissprot:Q9KV12; MIAA_VIBCH TRNA; E=2e-44 swissprot:O30762; MIAA_PSEPU TRNA; E=4e-44 COG: XF0090; COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; E=1e-45 PFAM: PF01715; IPP transferase; E=3e-70 NP_864451.1 PMID: 3106324 best DB hits: BLAST: pir:D75017; n-terminal acetyltransferase PAB1098 - Pyrococcus abyssi; E=4e-05 pir:A71455; probable acetyltransferase - Pyrococcus horikoshii; E=2e-04 embl:CAA51674.1; (X73149) Nourseothricin acetyltransferase; E=3e-04 COG: PAB1098; COG0456 Acetyltransferases; E=4e-06 BS_yobR; COG0454 Histone acetyltransferase HPA2 and related; E=1e-04 PA4678; COG0456 Acetyltransferases; E=5e-04 PFAM: PF00583; Acetyltransferase (GNAT) family; E=3.8e-21 NP_864456.1 PMID: 9403685 best DB hits: BLAST: pir:G70121; conserved hypothetical protein BB0175 - Lyme disease; E=5e-14 swissprot:P71761; YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480; E=1e-11 pir:G82493; conserved hypothetical protein VCA0174 [imported] -; E=3e-09 COG: BB0175; COG1721 Uncharacterized ACR; E=4e-15 PFAM: PF01882; Protein of unknown function DUF; E=8.2e-16 NP_864457.1 PMID: 7542800 best DB hits: BLAST: pir:D83271; probable ATP-binding component of ABC transporter PA2987; E=2e-50 swissprot:P45247; LOLD_HAEIN LIPOPROTEIN RELEASING SYSTEM; E=2e-49 pir:D83071; probable ATP-binding component of ABC transporter PA4594; E=2e-48 COG: PA2987; COG1136 ABC-type (unclassified) transport system, ATPase; E=2e-51 PFAM: PF00006; ATP synthase alpha/beta family, n; E=0.11 PF01202; Shikimate kinase; E=0.46 PF00005; ABC transporter; E=1.7e-54 NP_864461.1 PMID: 8326859 best DB hits: BLAST: gb:AAF36472.1; AF127982_2 (AF127982) GspG [Burkholderia cepacia]; E=1e-04 ddbj:BAB18792.1; (AB050004) GspG [Burkholderia cepacia]; E=1e-04 gb:AAC83358.1; (AF092918) outer membrane secretion protein T; E=3e-04 COG: PA3101; COG2165 General secretory pathway proteins G and H and; E=2e-04 PFAM: PF00114; Pilin (bacterial filament); E=0.16 NP_864463.1 PMID: 11759840 best DB hits: BLAST: pir:S75044; hypothetical protein sll1606 - Synechocystis sp. (strain; E=0.004 pir:E70470; conserved hypothetical protein aq_1986 - Aquifex; E=0.005 COG: sll1606; COG1434 Uncharacterized ACR; E=3e-04 PFAM: PF02698; Uncharacterized ACR, COG1434; E=0.0017 NP_864464.1 PMID: 8083218 best DB hits: BLAST: gb:AAH00398.1; AAH00398 (BC000398) platelet-activating factor; E=3e-10 ref:XP_006434.1; platelet-activating factor acetylhydrolase,; E=3e-10 gb:AAC52997.1; (U57747) platelet-activating factor; E=1e-09 PFAM: PF00657; Lipase/Acylhydrolase with GDSL-li; E=0.00082 PF02266; Platelet activating factor acetyl; E=0.00029 NP_864465.1 PMID: 8590279 best DB hits: BLAST: swissprot:Q55914; Y309_SYNY3 HYPOTHETICAL METHYLTRANSFERASE; E=3e-26 swissprot:O58549; Y819_PYRHO HYPOTHETICAL METHYLTRANSFERASE PH0819; E=1e-23 swissprot:P42349; YC42_SYNY3 HYPOTHETICAL METHYLTRANSFERASE; E=2e-18 COG: slr0309; COG1032 Fe-S oxidoreductases family 2; E=3e-27 NP_864467.1 PMID: 8969512 best DB hits: BLAST: pir:T36717; probable serinethreonine protein kinase - Streptomyces; E=4e-36 swissprot:P54743; PKNA_MYCLE SERINETHREONINE-PROTEIN; E=7e-36 swissprot:P71585; PKNA_MYCTU SERINETHREONINE-PROTEIN; E=1e-35 COG: Rv0015c; COG0515 Serine/threonine protein kinases; E=1e-36 PFAM: PF00069; Protein kinase domain; E=2.4e-61 NP_864468.1 PMID: 8843436 best DB hits: BLAST: embl:CAB55728.1; (AL117387) hypothetical protein SCF41.25; E=1e-13 ddbj:BAA87752.1; (AB016260) Hypothetical gene [Agrobacterium; E=3e-06 NP_864470.1 PMID: 9163424 best DB hits: BLAST: gb:AAG45731.1; AF229441_2 (AF229441) y4yA [Sinorhizobium fredii]; E=7e-30 swissprot:P55709; Y4YA_RHISN HYPOTHETICAL 49.9 KD PROTEIN Y4YA; E=3e-29 gb:AAG45729.1; AF229440_2 (AF229440) y4yA [Sinorhizobium fredii]; E=3e-26 COG: sll0504; COG0019 Diaminopimelate decarboxylase; E=7e-08 PFAM: PF02784; Pyridoxal-dependent decarboxyla; E=0.71 NP_864472.1 PMID: 2677007 best DB hits: BLAST: swissprot:P45758; GSPD_ECOLI PROBABLE GENERAL SECRETION PATHWAY; E=5e-22 swissprot:P15644; GSPD_KLEPN GENERAL SECRETION PATHWAY PROTEIN D; E=2e-21 gb:AAA58785.1; (L33796) EpsD [Vibrio cholerae]; E=2e-18 COG: gspD; COG1450 General secretory pathway protein D; E=5e-23 PFAM: PF00263; Bacterial type II and III secret; E=2.9e-05 NP_864477.1 PMID: 10484179 best DB hits: BLAST: gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=1e-09 ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=1e-08 swissprot:Q54728; YJHC_STRPN HYPOTHETICAL PROTEIN IN NANB 3'REGION; E=3e-07 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=9e-10 PFAM: PF01408; Oxidoreductase, NAD-bindi; E=3.2e-12 NP_864479.1 PMID: 9537320 best DB hits: BLAST: pir:A70471; phosphoglycerate mutase 1 - Aquifex aeolicus -----; E=4e-12 pir:A75439; probable phosphoglycerate mutase - Deinococcus; E=2e-11 pir:G72260; phosphoglycerate mutase - Thermotoga maritima (strain; E=2e-11 COG: aq_1990; COG0406 Phosphoglycerate mutase/fructose-2,6-bisphosphatase; E=4e-13 Rv2228c_2; COG0406 Phosphoglycerate; E=3e-05 slr1748; COG0406 Phosphoglycerate mutase/fructose-2,6-bisphosphatase; E=4e-05 PFAM: PF00300; Phosphoglycerate mutase; E=0.0029 NP_864480.1 PMID: 10625676 best DB hits: BLAST: pir:G82052; ribulose-phosphate 3-epimerase VC2625 [imported] -; E=1e-42 gb:AAK03703.1; (AE006199) Dod [Pasteurella multocida]; E=1e-40 gb:AAF01048.1; AF189365_1 (AF189365) D-ribulose-5-phosphate; E=3e-40 COG: VC2625; COG0036 Pentose-5-phosphate-3-epimerase; E=1e-43 PFAM: PF00834; Ribulose-phosphate 3 epimerase; E=1.8e-85 NP_864481.1 PMID: 10617197 best DB hits: BLAST: gb:AAC79586.1; (AC005727) DOF zinc finger protein; E=0.43 NP_864483.1 PMID: 10419967 best DB hits: BLAST: gb:AAK00351.1; AF329876_7 (AF329876) outer membrane protein; E=2e-10 embl:CAA32520.1; (X14336) gene IV product [Bacteriophage I2-2]; E=2e-08 pir:D82816; fimbrial assembly protein XF0373 [imported] - Xylella; E=4e-05 COG: XF0373; COG1450 General secretory pathway protein D; E=3e-06 PFAM: PF00263; Bacterial type II and III secretion; E=5.3e-20 NP_864484.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA NP_864487.1 PMID: 8041620 best DB hits: BLAST: pir:S47803; hypothetical 33.7K protein (avtA-selB intergenic region); E=8e-07 swissprot:P37679; SGBU_ECOLI HEXULOSE-6-PHOSPHATE; E=8e-07 swissprot:P39305; SGAU_ECOLI HEXULOSE-6-PHOSPHATE; E=1e-05 COG: sgbU; COG1082 Predicted endonucleases; E=7e-08 PFAM: PF01319; Cholesterol oxidase; E=0.042 NP_864488.1 PMID: 8688087 best DB hits: BLAST: pir:D75091; large helicase-related protein (lhr-2) PAB0744 -; E=1e-73 ref:NP_071281.1; large helicase-related protein (lhr-2); E=4e-71 swissprot:Q57742; HELX_METJA ATP-DEPENDENT HELICASE; E=1e-70 COG: PAB0744; COG1201 Lhr-like helicases; E=1e-74 BS_yprA; COG1205 Distinct helicase with a unique C-terminal; E=5e-18 PFAM: PF00270; DEAD/DEAH box helicase; E=2.1e-16 PF00271; Helicase conserved C-terminal doma; E=5.5e-14 NP_864489.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA NP_864490.1 PMID: 7765282 best DB hits: BLAST: swissprot:P42663; CTAQ_THEAQ THERMOSTABLE CARBOXYPEPTIDASE 1; E=1e-105 swissprot:P50848; YPWA_BACSU HYPOTHETICAL 58.2 KDA PROTEIN IN; E=2e-90 gb:AAG20654.1; (AE005134) probable carboxypeptidase; Cxp; E=7e-90 COG: BS_ypwA; COG2317 Zn-dependent carboxypeptidases; E=2e-91 PFAM: PF02074; Carboxypeptidase Taq (M32) meta; E=2.1e-164 NP_864492.1 PMID: 9537320 best DB hits: BLAST: ddbj:BAB07301.1; (AP001519) histidinol dehydrogenase [Bacillus; E=4e-88 swissprot:O66976; HISX_AQUAE HISTIDINOL DEHYDROGENASE (HDH); E=1e-87 gb:AAK05307.1; AE006353_6 (AE006353) histidinol dehydrogenase (EC; E=2e-85 COG: BH3582; COG0141 Histidinol dehydrogenase; E=4e-89 PFAM: PF00815; Histidinol dehydrogenase; E=2.7e-158 NP_864493.1 PMID: 8550484 best DB hits: BLAST: pir:T12022; 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); E=1e-50 pir:G81224; 3-oxoacyl-(acyl-carrier-protein) synthase II NMB0219; E=3e-48 pir:F81995; 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); E=7e-48 COG: PA2965; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; E=1e-51 PFAM: PF00109; Beta-ketoacyl synthase, N-ter; E=2.3e-05 PF02801; Beta-ketoacyl synthase, C-ter; E=7.8e-51 NP_864494.1 PMID: 8759840 best DB hits: BLAST: gb:AAB68774.1; (U94886) hemolysin [Brachyspira hyodysenteriae]; E=4e-04 embl:CAC08813.1; (AJ279022) acyl carrier protein; E=0.053 pir:T11213; probable acyl carrier protein - Streptomyces glaucescens; E=0.067 NP_864495.1 PMID: 2254247 best DB hits: BLAST: gb:AAF63149.1; AC011001_19 (AC011001) Similar to phytoene; E=7e-15 gb:AAG29233.1; AC079732_4 (AC079732) hypothetical protein; E=4e-12 ddbj:BAB05567.1; (AP001513) BH1848~unknown conserved protein in; E=6e-11 COG: BH1848; COG1233 Phytoene dehydrogenase and related proteins; E=6e-12 VC0806; COG2509 Uncharacterized FAD-dependent dehydrogenases; E=0.001 DR0093; COG1233 Phytoene dehydrogenase and related proteins; E=0.006 PFAM: PF02032; Phytoene dehydrogenase related; E=6.5e-05 PF01494; FAD binding domain; E=0.13 PF00070; Pyridine nucleotide-disulphide; E=2.2e-06 NP_864496.1 PMID: 4149369 best DB hits: BLAST: swissprot:P16100; IDH_AZOVI ISOCITRATE DEHYDROGENASE [NADP]; E=0.0 pir:B81143; isocitrate dehydrogenase NMB0920 [imported] - Neisseria; E=0.0 pir:B82236; isocitrate dehydrogenase VC1141 [imported] - Vibrio; E=0.0 COG: NMB0920; COG2838 Monomeric isocitrate dehydrogenase; E=0.0 NP_864498.1 PMID: 1544900 best DB hits: BLAST: swissprot:P10950; HIOM_BOVIN HYDROXYINDOLE O-METHYLTRANSFERASE; E=1e-48 swissprot:Q92056; HIOM_CHICK HYDROXYINDOLE O-METHYLTRANSFERASE; E=3e-48 embl:CAA75675.1; (Y15521) start position 1 [Homo sapiens]; E=5e-47 COG: Rv0567; COG0500 SAM-dependent methyltransferases; E=7e-32 PFAM: PF01047; MarR family; E=0.1 PF01022; Bacterial regulatory protein,; E=0.82 PF00891; O-methyltransferase; E=7.5e-53 NP_864499.1 PMID: 8037924 best DB hits: BLAST: swissprot:P30176; YBIA_ECOLI HYPOTHETICAL 18.7 KDA PROTEIN IN; E=3e-34 pir:A75416; conserved hypothetical protein - Deinococcus radiodurans; E=4e-05 pir:B83074; conserved hypothetical protein PA4580 [imported] -; E=1e-04 COG: ybiA; COG3236 Uncharacterized BCR; E=3e-35 NP_864504.1 best DB hits: BLAST: pir:D69820; hypothetical protein yhaZ - Bacillus subtilis -----; E=8e-39 embl:CAB40602.1; (AJ010140) DNA alkylation repair enzyme; E=2e-33 gb:AAK03834.1; (AE006212) unknown [Pasteurella multocida]; E=6e-17 NP_864505.1 PMID: 8156986 best DB hits: BLAST: pir:H83380; O6-methylguanine-DNA methyltransferase PA2118 [imported]; E=9e-29 gb:AAA23413.1; (M10315) Ada polyprotein [Escherichia coli]; E=7e-26 pdb:1SFE; Ada O6-Methylguanine-Dna Methyltransferase From; E=7e-26 COG: PA2118_2; COG0350 Methylated DNA-protein cysteine methyltransferase; E=5e-29 PFAM: PF01035; 6-O-methylguanine DNA methyltr; E=3.9e-33 NP_864506.1 PMID: 8843436 best DB hits: BLAST: embl:CAC16441.1; (AL450165) esterase [Streptomyces; E=2e-40 pir:A69744; beta-lactamase homolog ybbE - Bacillus subtilis -----; E=5e-37 embl:CAB94057.1; (AL358672) secreted protein.; E=3e-32 COG: BS_ybbE; COG1680 Beta-lactamase class C and other penicillin binding; E=5e-38 NP_864508.1 PMID: 7744061 best DB hits: BLAST: pir:S69336; arylsulfatase (EC 3.1.6.1) - Pseudomonas aeruginosa; E=4e-77 swissprot:P51691; ARS_PSEAE ARYLSULFATASE (ARYL-SULFATE; E=1e-76 gb:AAF71375.1; AF262989_2 (AF262989) arylsulfatase [Klebsiella; E=6e-57 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=9e-78 PFAM: PF00884; Sulfatase; E=3.2e-102 NP_864509.1 best DB hits: PFAM: PF00882; Zinc dependent phospholipase C; E=0.41 NP_864511.1 PMID: 8843436 best DB hits: BLAST: embl:CAB95808.1; (AL359949) large transcriptional; E=0.35 NP_864512.1 PMID: 11756688 best DB hits: BLAST: pir:A82542; conserved hypothetical protein XF2574 [imported] -; E=0.028 pir:T29446; hypothetical protein - Streptomyces coelicolor -----; E=0.57 COG: XF2574; COG0671 Membrane-associated phospholipid phosphatase; E=0.003 PFAM: PF01569; PAP2 superfamily; E=0.00063 NP_864514.1 PMID: 10761919 best DB hits: BLAST: pir:G81831; probable integral membrane protein NMA2020 [imported] -; E=0.43 pir:F81195; conserved hypothetical protein NMB0465 [imported] -; E=0.55 NP_864515.1 PMID: 9620975 best DB hits: BLAST: pir:T44787; glucokinase (EC 2.7.1.2) [imported] - Bacillus; E=3e-32 swissprot:P54495; GLK_BACSU GLUCOKINASE (GLUCOSE KINASE) -----; E=8e-32 ddbj:BAB04516.1; (AP001509) glucose kinase [Bacillus halodurans]; E=4e-30 COG: BS_glcK; COG1940 Transcriptional regulators; E=8e-33 PFAM: PF00370; FGGY family of carbohydrate kinases; E=0.071 PF00480; ROK family; E=3.3e-37 NP_864516.1 binds to the ribosome on the universally-conserved alpha-sarcin loop NP_864521.1 PMID: 8843436 best DB hits: BLAST: embl:CAB61668.1; (AL133213) glycosyl transferase.; E=4e-32 embl:CAC15463.1; (AJ294477) polyprenol phosphate; E=7e-29 embl:CAB11300.1; (Z98604) hypothetical protein MLCB2052.02; E=1e-28 COG: Rv2051c_2; COG0463 Glycosyltransferases involved in cell wall; E=2e-29 PFAM: PF00535; Glycosyl transferase; E=1.6e-19 NP_864523.1 PMID: 11823852 best DB hits: BLAST: gb:AAF54264.1; (AE003680) CG8032 gene product [Drosophila; E=0.033 embl:CAB59668.1; (AL132674) monooxygenase. [Streptomyces; E=0.19 pir:A83453; probable flavin-containing monooxygenase PA1538; E=0.44 PFAM: PF01494; FAD binding domain; E=0.0018 PF00070; Pyridine nucleotide-disulphide; E=0.013 PF01593; Flavin containing amine oxidase; E=0.25 NP_864524.1 PMID: 8905231 best DB hits: BLAST: pir:S74922; hypothetical protein slr0681 - Synechocystis sp. (strain; E=8e-56 pir:H82064; conserved hypothetical protein VC2522 [imported] -; E=2e-33 gb:AAK02512.1; (AE006079) unknown [Pasteurella multocida]; E=8e-33 COG: slr0681; COG0530 Ca2+/Na+ antiporter; E=7e-57 PFAM: PF01699; Sodium/calcium exchanger protein; E=6.8e-32 NP_864530.1 PMID: 8688087 best DB hits: BLAST: swissprot:Q57970; Y550_METJA HYPOTHETICAL PROTEIN MJ0550 -----; E=2e-04 gb:AAG20125.1; (AE005091) Vng1941c [Halobacterium sp. NRC-1]; E=0.006 gb:AAB90230.1; (AE001034) conserved hypothetical protein; E=0.15 COG: MJ0550; COG1244 Predicted Fe-S oxidoreductases; E=2e-05 NP_864531.1 PMID: 8843436 best DB hits: BLAST: gb:AAB97506.1; (U74493) halogenase PrnC [Pseudomonas fluorescens]; E=3e-22 gb:AAD46367.1; AF161185_2 (AF161185) PrnC [Myxococcus fulvus]; E=1e-21 gb:AAD46372.1; AF161186_3 (AF161186) PrnC [Burkholderia; E=2e-21 PFAM: PF01494; FAD binding domain; E=0.009 PF01224; FAD-dependent glycerol-3-phos; E=0.048 PF00070; Pyridine nucleotide-disulphid; E=0.0082 NP_864532.1 PMID: 10984043 best DB hits: BLAST: pir:C83287; hypothetical protein PA2870 [imported] - Pseudomonas; E=4e-29 pir:H70302; conserved hypothetical protein aq_035 - Aquifex aeolicus; E=1e-26 pir:A71678; probable response regulatory protein RP237 - Rickettsia; E=9e-24 COG: PA2870; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=4e-30 TM1594; COG2199 Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF); E=1e-22 PA0290_2; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=1e-22 PFAM: PF00989; PAS domain; E=2.5e-05 PF00990; GGDEF domain; E=5.9e-52 PF01966; HD domain; E=1.2e-17 NP_864533.1 PMID: 96163873 best DB hits: BLAST: embl:CAA60685.1; (X87241) homologue of Drosophila Fat protein [Homo; E=3e-18 embl:CAB65271.1; (AJ250768) mouse fat 1 cadherin [Mus musculus]; E=1e-17 PFAM: PF00054; Laminin G domain; E=0.3 PF00354; Pentaxin family; E=3.9e-10 PF00059; Lectin C-type domain; E=0.00071 NP_864534.1 best DB hits: PFAM: PF02321; Outer membrane efflux protein; E=5.9e-09 NP_864535.1 PMID: 9537320 best DB hits: BLAST: pir:C70415; cation efflux system (czcB-like) - Aquifex aeolicus; E=1e-10 gb:AAK03081.1; (AE006139) unknown [Pasteurella multocida]; E=7e-09 pir:B82357; conserved hypothetical protein VC0165 [imported] -; E=5e-08 COG: aq_1331; COG0845 Membrane-fusion protein; E=1e-11 ydhJ; COG1566 Multidrug resistance efflux pump; E=7e-06 XF0244; COG0845 Membrane-fusion protein; E=3e-05 PFAM: PF00364; Biotin-requiring enzyme; E=0.14 PF00529; HlyD family secretion protein; E=0.0021 NP_864537.1 PMID: 11466286 best DB hits: BLAST: ddbj:BAA96518.1; (AB044351) ORFE [Pseudomonas syringae]; E=9e-04 pir:D82709; colicin V secretion protein XF1216 [imported] - Xylella; E=0.002 pir:B83186; probable RND efflux membrane fusion protein precursor; E=0.003 COG: XF1216; COG0845 Membrane-fusion protein; E=2e-04 PA3136; COG1566 Multidrug resistance efflux pump; E=0.003 PA4374; COG0845 Membrane-fusion protein; E=0.007 PFAM: PF00529; HlyD family secretion protein; E=0.034 NP_864538.1 PMID: 7542800 best DB hits: BLAST: pir:G64100; hypothetical protein HI0894 - Haemophilus influenzae; E=0.077 swissprot:Q57500; Y894_HAEIN HYPOTHETICAL PROTEIN HI0894 -----; E=0.077 COG: HIN0311; COG0845 Membrane-fusion protein; E=0.007 PFAM: PF02163; Sterol-regulatory element bind; E=0.011 PF00364; Biotin-requiring enzyme; E=0.088 NP_864541.1 PMID: 8688087 best DB hits: BLAST: swissprot:Q57571; Y107_METJA HYPOTHETICAL PROTEIN MJ0107 -----; E=5e-21 gb:AAB89833.1; (AE001006) dihydropteroate synthase [Archaeoglobus; E=1e-20 pir:H69099; conserved hypothetical protein MTH1741 -; E=1e-16 COG: MJ0107; COG0294 Dihydropteroate synthase; E=5e-22 NP_864543.1 PMID: 10567266 best DB hits: BLAST: gb:AAG58375.1; AE005552_5 (AE005552) orf, hypothetical protein; E=7e-18 swissprot:P25536; YHDE_ECOLI PROTEIN YHDE ----- pir: JQ1271; E=1e-17 gb:AAA58051.1; (U18997) ORF_f217; orfE of ECMRED, uses 2nd start; E=1e-17 COG: yhdE; COG0424 Nucleotide-binding protein implicated in inhibition of; E=1e-18 BH3033; COG0424 Nucleotide-binding protein implicated in inhibition; E=2e-18 yceF; COG0424 Nucleotide-binding protein implicated in inhibition of; E=4e-08 PFAM: PF02545; Maf-like protein; E=9.4e-36 NP_864546.1 PMID: 8288535 best DB hits: BLAST: swissprot:P35887; DNAA_CAUCR CHROMOSOMAL REPLICATION INITIATOR; E=7e-35 gb:AAD42393.1; AF157493_1 (AF157493) chromosomal replication; E=2e-34 swissprot:P05648; DNAA_BACSU CHROMOSOMAL REPLICATION INITIATOR; E=4e-33 COG: BS_dnaA; COG0593 ATPase involved in DNA replication initiation; E=4e-34 PFAM: PF00004; ATPase associated with vari; E=0.014 PF00308; Bacterial dnaA protein; E=2.7e-42 NP_864547.1 PMID: 7584024 best DB hits: BLAST: pir:T36598; probable replicative DNA helicase - Streptomyces; E=4e-86 pir:G75504; replicative DNA helicase - Deinococcus radiodurans; E=2e-83 gb:AAD19901.1; (AF100420) DnaB replication fork helicase [Thermus; E=1e-80 COG: DR0549; COG0305 Replicative DNA helicase; E=2e-84 PFAM: PF00772; DnaB-like helicase; E=2.9e-138 NP_864549.1 PMID: 10984043 best DB hits: BLAST: ddbj:BAA14000.1; (D89625) adenylate cyclase [Anabaena sp.]; E=3e-17 pir:T17197; adenylate cyclase homolog - Spirulina platensis -----; E=1e-16 embl:CAC01253.1; (AJ243734) hydrogenase transcriptional; E=1e-13 COG: PA2572; COG2204 AAA superfamily ATPases with N-terminal receiver; E=6e-13 VC1087_1; COG0784 CheY-like receiver domains; E=7e-10 VCA0142; COG2204 AAA superfamily ATPases with N-terminal receiver; E=3e-08 PFAM: PF00072; Response regulator receiver doma; E=4.4e-17 NP_864553.1 PMID: 11214968 NP_864555.1 PMID: 2402464 best DB hits: BLAST: swissprot:P23701; OM6_CHLPS 60 KDA OUTER MEMBRANE PROTEIN; E=2e-05 pir:B39439; 60K cysteine-rich outer membrane protein 1 precursor -; E=2e-05 pir:JC5204; 60K cysteine-rich outer membrane protein 2 precursor -; E=2e-05 NP_864557.1 PMID: 8867804 best DB hits: BLAST: swissprot:P39139; YXXB_BACSU HYPOTHETICAL 31.8 KD PROTEIN IN DEOR; E=6e-24 pir:S49453; hypothetical protein - Bacillus subtilis ----- embl:; E=4e-04 NP_864558.1 PMID: 9698324 best DB hits: BLAST: gb:AAC31910.1; (AF076291) Rab-GDP dissociation inhibitor [Gallus; E=0.081 embl:CAA52412.1; (X74401) rab GDI beta [Rattus norvegicus]; E=0.36 gb:AAA78786.1; (L36314) GDP dissociation inhibitor beta [Mus; E=0.36 NP_864559.1 PMID: 10710307 best DB hits: BLAST: pir:D81118; conserved hypothetical protein ankyrin-related protein; E=3e-42 pir:C81903; hypothetical protein NMA1343 [imported] - Neisseria; E=9e-28 gb:AAF61702.1; AF222766_1 (AF222766) ankyrin 1 [Bos taurus]; E=1e-05 COG: NMB1133_2; COG0666 Ankyrin repeat proteins; E=7e-05 PFAM: PF00023; Ank repeat; E=0.0093 NP_864560.1 PMID: 10910347 best DB hits: BLAST: pir:H82556; beta-alanine synthetase XF2443 [imported] - Xylella; E=6e-16 pir:G75156; hypothetical protein PAB0277 - Pyrococcus abyssi (strain; E=3e-13 gb:AAF87102.1; AF284573_1 (AF284573) Nit protein 2 [Mus musculus]; E=4e-12 COG: XF2443; COG0388 Predicted amidohydrolase; E=6e-17 PFAM: PF00795; Carbon-nitrogen hydrolase; E=1.2e-40 NP_864562.1 PMID: 10336424 best DB hits: BLAST: gb:AAF30402.1; AF109924_1 (AF109924) sulfatase 1 precursor [Helix; E=2e-35 gb:AAF71377.1; AF262990_2 (AF262990) arylsulfatase [Klebsiella; E=2e-30 gb:AAF71375.1; AF262989_2 (AF262989) arylsulfatase [Klebsiella; E=3e-30 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=2e-23 yejM; COG3083 Predicted hydrolase of alkaline phosphatase; E=0.008 PFAM: PF00884; Sulfatase; E=5e-46 NP_864563.1 PMID: 9634230 best DB hits: BLAST: pir:A70710; hypothetical protein Rv0790c - Mycobacterium; E=8e-07 pir:A69206; hypothetical protein MTH795 - Methanobacterium; E=2e-05 pir:D70818; hypothetical protein Rv1673c - Mycobacterium; E=2e-05 COG: Rv0790c; COG1305 transglutaminases, cysteine; E=8e-08 PFAM: PF01841; Transglutaminase-like superfam; E=9e-08 NP_864564.1 PMID: 7516791 best DB hits: BLAST: swissprot:P46536; PYRK_BACCL DIHYDROOROTATE DEHYDROGENASE ELECTRON; E=1e-21 swissprot:Q58841; PYRK_METJA PROBABLE DIHYDROOROTATE DEHYDROGENASE; E=1e-17 swissprot:O27280; PYRK_METTH PROBABLE DIHYDROOROTATE DEHYDROGENASE; E=1e-16 COG: MJ1446; COG0543 2-polyprenylphenol hydroxylase and related; E=1e-18 PFAM: PF00970; Oxidoreductase FAD-binding doma; E=0.3 NP_864565.1 best DB hits: BLAST: pir:E82656; conserved hypothetical protein XF1630 [imported] -; E=5e-06 pir:T35300; probable transcriptional regulator - Streptomyces; E=3e-04 pir:D69900; conserved hypothetical protein yobV - Bacillus subtilis; E=0.003 COG: XF1630; COG2378 Predicted transcriptional regulator; E=5e-07 NP_864571.1 PMID: 10960085 best DB hits: BLAST: embl:CAB95035.1; (AJ272497) orf4 [Bacillus anthracis]; E=9e-12 pir:B83036; probable bacterioferritin PA4880 [imported] -; E=0.005 pir:G82332; bacterioferritin VC0365 [imported] - Vibrio cholerae; E=0.019 COG: PA4880; COG2193 Bacterioferritin (cytochrome b1); E=5e-04 NP_864573.1 best DB hits: PFAM: PF01351; Ribonuclease HII; E=0.11 NP_864574.1 PMID: 10567266 best DB hits: BLAST: pir:E72220; conserved hypothetical protein - Thermotoga maritima; E=3e-39 pir:A75484; conserved hypothetical protein - Deinococcus radiodurans; E=1e-37 embl:CAB94603.1; (AL359214) integral membrane protein; E=2e-35 COG: DR0719; COG2206 HD-GYP domain; E=1e-38 PFAM: PF01590; GAF domain; E=0.4 PF01966; HD domain; E=1.8e-15 NP_864575.1 best DB hits: BLAST: gb:AAF28931.1; AF161371_1 (AF161371) HSPC253 [Homo sapiens]; E=0.33 NP_864576.1 best DB hits: BLAST: gb:AAG59798.1; AF292097_4 (AF292097) SenB [Leptospira interrogans]; E=4e-06 gb:AAC23717.1; (AF031161) transcriptional activator [Pseudomonas; E=0.004 pir:C82379; response regulator VCA1086 [imported] - Vibrio cholerae; E=0.005 COG: VCA1086_2; COG2208 Serine phosphatase RsbU, regulator of sigma; E=5e-04 TP0995; COG0664 cAMP-binding domains - Catabolite gene activator and; E=0.002 PFAM: PF00072; Response regulator receiver doma; E=0.29 PF02518; Histidine kinase-, DNA gyrase B-; E=0.65 NP_864578.1 PMID: 2402463 best DB hits: BLAST: swissprot:P23700; OM6_CHLPN 60 KDA OUTER MEMBRANE PROTEIN; E=8e-23 gb:AAG60550.1; (AF240773) 60 kDa cysteine-rich membrane complex; E=3e-21 swissprot:P26758; OM6C_CHLTR 60 KDA OUTER MEMBRANE PROTEIN,; E=5e-21 NP_864582.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_864584.1 PMID: 12024217 best DB hits: BLAST: ddbj:BAB05615.1; (AP001513) BH1896~unknown conserved protein; E=0.48 NP_864586.1 PMID: 8938413 best DB hits: BLAST: pir:T51527; UDP-glucose dehydrogenase-like protein - Arabidopsis; E=1e-155 ddbj:BAB02581.1; (AP001309) UDP-glucose dehydrogenase; E=1e-151 swissprot:Q96558; UGDH_SOYBN UDP-GLUCOSE 6-DEHYDROGENASE (UDP-GLC; E=1e-150 COG: aq_024; COG1004 Predicted UDP-glucose 6-dehydrogenase; E=2e-61 VC0918; COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; E=1e-27 PA3540; COG1004 Predicted UDP-glucose 6-dehydrogenase; E=8e-26 PFAM: PF00984; UDP-glucose/GDP-mannose dehydro; E=2.6e-180 NP_864589.1 PMID: 10484179 best DB hits: BLAST: ddbj:BAB05496.1; (AP001513) BH1777~unknown conserved protein; E=1e-04 ddbj:BAA14001.1; (D89626) adenylate cyclase [Anabaena sp.]; E=0.001 pir:B70700; hypothetical protein Rv0020c - Mycobacterium; E=0.003 COG: BH1777_1; COG1716 FHA-domain-containing proteins; E=5e-05 PFAM: PF00498; FHA domain; E=4.6e-18 NP_864590.1 PMID: 9274029 best DB hits: BLAST: pir:H70507; probable sigE protein - Mycobacterium tuberculosis; E=6e-14 gb:AAC45221.1; (U87307) extracytoplasmic function alternative; E=2e-13 gb:AAC45219.1; (U87308) extracytoplasmic function alternative; E=5e-13 COG: Rv1221; COG1595 DNA-directed RNA polymerase specialized sigma; E=6e-15 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=2.1e-09 NP_864592.1 PMID: 10360571 best DB hits: BLAST: pir:F72424; hypothetical protein - Thermotoga maritima (strain MSB8); E=0.098 NP_864594.1 PMID: 9403685 best DB hits: BLAST: pir:H70121; methanol dehydrogenase regulator (moxR) homolog - Lyme; E=4e-64 pir:D75008; methanol dehydrogenase regulatory protein (moxr-2); E=5e-63 pir:C83106; conserved hypothetical protein PA4322 [imported] -; E=3e-62 COG: BB0176; COG0714 MoxR-like ATPases; E=4e-65 PFAM: PF00004; ATPase associated with va; E=0.0036 PF01078; Magnesium chelatase, subunit Chl; E=1.6e-08 NP_864595.1 PMID: 9634230 best DB hits: BLAST: pir:G82493; conserved hypothetical protein VCA0174 [imported] -; E=3e-14 swissprot:P71761; YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480; E=8e-12 pir:G70121; conserved hypothetical protein BB0175 - Lyme disease; E=7e-11 COG: VCA0174; COG1721 Uncharacterized ACR; E=3e-15 PFAM: PF01882; Protein of unknown function DUF58; E=1.4e-24 NP_864597.1 best DB hits: PFAM: PF00092; von Willebrand factor type A domain; E=0.85 NP_864598.1 PMID: 8376963 best DB hits: BLAST: ddbj:BAA61806.1; (AB010300) replicase [garlic virus A]; E=0.77 NP_864600.1 PMID: 9679194 best DB hits: BLAST: pir:D75143; udp-glucose 4-epimerase (gale-1) PAB2145 - Pyrococcus; E=8e-42 pir:A71183; probable UDP-glucose 4-epimerase - Pyrococcus horikoshii; E=3e-40 pir:T51252; dTDPglucose 4,6-dehydratase (EC 4.2.1.46) [imported] -; E=4e-37 COG: PAB2145; COG0451 Nucleoside-diphosphate-sugar epimerases; E=8e-43 BH3364; COG1088 dTDP-D-glucose 4,6-dehydratase; E=2e-26 TM0630; COG0451 Nucleoside-diphosphate-sugar epimerases; E=5e-26 PFAM: PF00056; lactate/malate dehydrogenase, NAD b; E=0.011 PF01370; NAD dependent epimerase/dehydratase; E=7.1e-43 NP_864601.1 PMID: 8969512 best DB hits: BLAST: embl:CAA18685.1; (AL022602) serinethreonine protein; E=3e-23 pir:B70936; probable serinethreonine-specific protein kinase (EC; E=2e-22 swissprot:P54744; PKNB_MYCLE SERINETHREONINE-PROTEIN; E=6e-22 COG: Rv2176; COG0515 Serine/threonine protein kinases; E=2e-23 PFAM: PF00069; Protein kinase domain; E=9.4e-41 NP_864605.1 best DB hits: PFAM: PF01726; LexA DNA binding domain; E=0.85 NP_864606.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm NP_864607.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm NP_864608.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm NP_864609.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm NP_864610.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. NP_864611.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm NP_864613.1 PMID: 7542800 best DB hits: BLAST: pir:A82094; thiamin biosynthesis lipoprotein ApbE VC2289 [imported]; E=3e-61 swissprot:P44550; APBE_HAEIN THIAMINE BIOSYNTHESIS LIPOPROTEIN; E=8e-52 gb:AAK03418.1; (AE006171) ApbE [Pasteurella multocida]; E=4e-51 COG: VC2289; COG1477 Membrane-associated lipoprotein involved in thiamine; E=3e-62 NMB0563; COG1477 Membrane-associated lipoprotein involved in; E=2e-46 apbE; COG1477 Membrane-associated lipoprotein involved in thiamine; E=8e-45 PFAM: PF02424; ApbE family; E=6.5e-89 NP_864614.1 best DB hits: BLAST: gb:AAF19809.1; AF188287_1 (AF188287) MtaA [Stigmatella aurantiaca]; E=5e-17 pir:T00851; hypothetical protein T20F6.9 - Arabidopsis thaliana; E=2e-11 pir:E55210; hetI protein - Anabaena sp. (strain PCC 7120) -----; E=2e-11 COG: slr0495; COG2091 Phosphopantetheinyl transferase; E=3e-12 PFAM: PF01648; 4'-phosphopantetheinyl transferase s; E=7.5e-15 NP_864618.1 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=5e-22 embl:CAB94634.1; (AL359215) secreted glycosyl hydrolase.; E=1e-12 pir:T35029; hypothetical protein SC4C6.21c - Streptomyces coelicolor; E=8e-05 NP_864619.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate NP_864620.1 PMID: 12093901 best DB hits: BLAST: pir:H82553; 3-demethylubiquinone-9 3-methyltransferase XF2471; E=0.027 pir:T30158; hypothetical protein C37A2.6 - Caenorhabditis elegans; E=0.030 embl:CAA89660.1; (Z49629) ORF YJR129c [Saccharomyces cerevisiae]; E=0.76 COG: XF2471; COG2227; E=0.003 NP_864623.1 PMID: 9384377 best DB hits: BLAST: pir:G69999; transcriptional regulator GntR related protein ytrA -; E=8e-17 pir:D72336; transcriptional regulator, GntR family - Thermotoga; E=2e-14 pir:T36493; probable gntR-family transcriptional regulator -; E=9e-11 COG: BS_ytrA; COG1725 Predicted transcriptional regulators; E=8e-18 BS_yvoA; COG2188 Transcriptional regulators; E=8e-08 BH1164; COG1725 Predicted transcriptional regulators; E=8e-08 PFAM: PF00325; Bacterial regulatory proteins, crp f; E=0.49 PF00392; Bacterial regulatory proteins, gntR; E=9.4e-16 NP_864624.1 PMID: 10382966 best DB hits: BLAST: pir:F72742; probable transport ATP-binding protein APE0471 -; E=3e-34 pir:C72303; ABC transporter ATP-binding protein - Thermotoga; E=3e-34 gb:AAF81232.1; (AF263012) ABC transporter ATP binding protein; E=5e-34 COG: APE0471; COG1131 ABC-type multidrug transport system, ATPase; E=2e-35 PFAM: PF00448; SRP54-type protein, GTPase domain; E=0.16 PF00005; ABC transporter; E=1.4e-42 NP_864628.1 PMID: 10360571 best DB hits: BLAST: pir:F72425; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine; E=7e-12 ddbj:BAB03814.1; (AP001507); E=2e-09 swissprot:P29251; FAS_PNECA FOLIC ACID SYNTHESIS PROTEIN; E=3e-08 COG: TM0041; COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; E=7e-13 YNL256w_2; COG0801; E=9e-05 NMB0745; COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; E=1e-04 PFAM: PF01288; 7,8-dihydro-6-hydroxymethylpterin-py; E=2.4e-24 NP_864633.1 PMID: 10952301 best DB hits: BLAST: pir:C82076; general secretion pathway protein A VC2445 [imported] -; E=8e-18 pir:H82326; MSHA biogenesis protein MshM VC0403 [imported] - Vibrio; E=2e-16 swissprot:P45754; GSPA_AERHY GENERAL SECRETION PATHWAY PROTEIN A; E=2e-14 COG: VC2445_1; COG3267 General secretion pathway protein A; E=7e-19 PFAM: PF00719; Inorganic pyrophosphatase; E=0.73 PF00004; ATPase associated with; E=0.011 NP_864634.1 best DB hits: BLAST: pir:A71001; hypothetical protein PH1305 - Pyrococcus horikoshii; E=4e-13 pir:G75136; menaquinone biosynthesis methlytransferase related; E=9e-12 ddbj:BAB07674.1; (AP001520) BH3955~unknown conserved protein; E=2e-05 COG: PH1305; COG0500 SAM-dependent methyltransferases; E=4e-14 NP_864635.1 best DB hits: BLAST: pir:S27612; ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.-) -; E=2e-87 pir:S27619; ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.-) -; E=3e-86 pdb:1EYY; A Chain A, Crystal Structure Of The Nadp+ Dependent; E=8e-79 COG: PA2217; COG1012 NAD-dependent aldehyde dehydrogenases; E=9e-80 PFAM: PF00831; Ribosomal L29 protein; E=0.78 PF00171; Aldehyde dehydrogenase; E=2.9e-07 NP_864636.1 PMID: 8969512 best DB hits: BLAST: swissprot:P54744; PKNB_MYCLE SERINETHREONINE-PROTEIN; E=3e-40 swissprot:Q11053; PKNH_MYCTU PROBABLE SERINETHREONINE-PROTEIN; E=2e-38 swissprot:P71584; PKNB_MYCTU SERINETHREONINE-PROTEIN; E=2e-38 COG: Rv1266c; COG0515 Serine/threonine protein kinases; E=1e-39 PFAM: PF00069; Protein kinase domain; E=1.1e-41 PF00400; WD domain, G-beta repeat; E=0.0026 NP_864638.1 PMID: 10484179 best DB hits: BLAST: ddbj:BAB06223.1; (AP001515) serinethreonine protein kinase; E=2e-37 embl:CAB94054.1; (AL358672) serinethreonine-protein; E=2e-34 pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=2e-33 COG: BH2504_1; COG0515 Serine/threonine protein kinases; E=2e-38 PFAM: PF00069; Protein kinase domain; E=5.1e-46 PF00400; WD domain, G-beta repeat; E=0.023 NP_864639.1 PMID: 9384377 best DB hits: BLAST: pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=9e-29 ddbj:BAB06223.1; (AP001515) serinethreonine protein kinase; E=1e-28 swissprot:P54744; PKNB_MYCLE SERINETHREONINE-PROTEIN; E=6e-28 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=8e-30 PFAM: PF00069; Protein kinase domain; E=8.4e-42 PF00400; WD domain, G-beta repeat; E=0.3 NP_864640.1 PMID: 7665561 best DB hits: BLAST: swissprot:Q60560; SMB2_MESAU DNA-BINDING PROTEIN SMUBP-2; E=1e-100 gb:AAG28561.1; AF199411_1 (AF199411) antifreeze-enhancer binding; E=1e-99 gb:AAA70430.1; (L24544) DNA helicase [Homo sapiens]; E=1e-98 COG: aq_2057; COG1112 Superfamily I DNA and RNA helicases and helicase; E=1e-83 PFAM: PF00910; RNA helicase; E=0.63 PF00580; UvrD/REP helicase; E=0.54 PF00004; ATPase associated with; E=0.0017 NP_864641.1 PMID: 10984043 best DB hits: BLAST: pir:G83401; hypothetical protein PA1960 [imported] - Pseudomonas; E=9e-05 pir:B81972; probable integral membrane protein NMA0537 [imported]; E=0.014 pir:D81029; conserved hypothetical protein NMB1917 [imported] -; E=0.018 COG: PA1960_2; COG3326 Predicted membrane protein; E=4e-05 NP_864643.1 PMID: 9405209 best DB hits: BLAST: swissprot:P77980; AROB_SALTY 3-DEHYDROQUINATE SYNTHASE -----; E=4e-66 pir:B82053; 3-dehydroquinate synthase VC2628 [imported] - Vibrio; E=5e-65 ddbj:BAB10417.1; (AB011474) 3-dehydroquinate synthase-like; E=6e-63 COG: VC2628; COG0337 3-dehydroquinate synthetase; E=5e-66 PFAM: PF01761; 3-dehydroquinate synthase; E=4e-146 NP_864644.1 PMID: 9919671 best DB hits: BLAST: embl:CAA09920.1; (AJ012097) NusG-like protein [Myxococcus; E=3e-05 pir:G82255; probable transcription activator RfaH VC0990 [imported]; E=4e-04 embl:CAA10615.1; (AJ132239) transcriptional activator [Erwinia; E=0.019 COG: VC0990; COG0250 Transcription antiterminator; E=3e-05 NP_864646.1 PMID: 2543955 best DB hits: BLAST: pir:S04349; nitrate reductase (NADH) (EC 1.6.6.1) - Escherichia coli; E=5e-75 swissprot:P08201; NIRB_ECOLI NITRITE REDUCTASE [NAD(P)H] LARGE; E=3e-69 gb:AAG58473.1; AE005559_9 (AE005559) nitrite reductase (NAD(P)H); E=3e-69 COG: nirB; COG1251 NAD(P)H-nitrite reductase; E=3e-70 PH1509; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; E=3e-38 PFAM: PF00070; Pyridine nucleotide-disulphide oxid; E=1.5e-65 NP_864647.1 PMID: 11248100 best DB hits: BLAST: gb:AAK02107.1; (AE006035) NrfA [Pasteurella multocida]; E=0.068 PFAM: PF02335; Cytochrome c552; E=0.21 NP_864649.1 PMID: 3067078 best DB hits: BLAST: embl:CAC11135.1; (AJ245945) neuroglobin [Mus musculus]; E=1e-09 gb:AAG59898.1; (AF334379) neuroglobin [Rattus norvegicus]; E=1e-09 ddbj:BAA83959.1; (AB024563) HMP [Bacillus halodurans] -----; E=1e-08 COG: BH1058_1; COG1017 Hemoglobin-like flavoprotein; E=1e-09 PFAM: PF00042; Globin; E=3.9e-20 NP_864652.1 PMID: 8905231 best DB hits: BLAST: swissprot:Q00808; HET1_PODAN VEGETATIBLE INCOMPATIBILITY PROTEIN; E=8e-17 swissprot:P49695; PKWA_THECU SERINETHREONINE-PROTEIN; E=9e-14 swissprot:P78706; RCO1_NEUCR TRANSCRIPTIONAL REPRESSOR RCO-1; E=6e-13 COG: sll1491; COG2319 WD40 repeat protein; E=9e-13 PFAM: PF00400; WD domain, G-beta repeat; E=0.0052 NP_864656.1 PMID: 99098700 best DB hits: BLAST: pir:T28679; fibrinogen-binding protein homolog - Staphylococcus aureus; E=6e-11 gb:AAF72509.1; AF245041_1 (AF245041) cell-surface adhesin; E=2e-09 gb:AAF76874.1; (AF246145) unknown [uncultured soil microbe; E=5e-07 COG: sll0656_1; COG3204 Uncharacterized BCR; E=9e-05 PFAM: PF00028; Cadherin domain; E=0.88 PF00404; Dockerin type I repeat; E=0.32 NP_864660.1 PMID: 1712356 best DB hits: BLAST: pir:A47026; alkaline phosphatase, 145K - Synechococcus sp. (strain PCC; E=0.0 pir:S74916; alkaline phosphatase - Synechocystis sp. (strain PCC 6803); E=1e-108 pir:A69809; probable multifunctional phosphoesterase (EC 3.1.-.-) yfkN; E=5e-22 COG: sll0654_2; COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase; E=8e-99 DRA0018; COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and; E=1e-22 BS_yfkN_2; COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase; E=4e-22 PFAM: PF01009; 5'-nucleotidase, catalytic do; E=1e-32 PF02872; 5'-nucleotidase, C-terminal d; E=3.9e-38 PF00404; Dockerin type I repeat; E=0.0061 NP_864662.1 PMID: 7632918 best DB hits: BLAST: swissprot:P80028; THIH_CHLRE THIOREDOXIN H-TYPE (TRX-H); E=0.078 pdb:1TOF; Thioredoxin H (Oxidized Form), Nmr, 23 Structures; E=0.078 gb:AAF19044.1; (L08896) thioredoxin [Mycoplasma gallisepticum]; E=0.22 PFAM: PF01835; Alpha-2-macroglobulin family N-termi; E=0.4 PF00085; Thioredoxin; E=0.18 NP_864664.1 PMID: 9353932 best DB hits: BLAST: ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=2e-07 swissprot:P40332; YISS_BACSU HYPOTHETICAL 37.5 KD PROTEIN IN; E=6e-06 pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=1e-05 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=2e-08 PFAM: PF01408; Oxidoreductase, NAD-bindi; E=5e-14 NP_864668.1 best DB hits: BLAST: pir:T30283; polyketide synthase - Streptomyces sp. (strain MA6548); E=0.11 gb:AAF86396.1; AF235504_17 (AF235504) FkbA [Streptomyces; E=0.11 pir:T30228; polyketide synthase - Streptomyces hygroscopicus -----; E=0.12 NP_864669.1 PMID: 8843436 best DB hits: BLAST: embl:CAB59500.1; (AL132648) hypothetical protein SCI41.30c; E=5e-16 pir:C70512; hypothetical protein Rv2112c - Mycobacterium; E=1e-13 gb:AAC45734.1; (U26422) ORF6(2); similar to ORF6(1) of; E=3e-13 NP_864671.1 PMID: 9835038 best DB hits: BLAST: swissprot:O50634; RPOA_BACHD DNA-DIRECTED RNA POLYMERASE ALPHA; E=2e-09 swissprot:Q9Z3E7; RPOA_XANCP DNA-DIRECTED RNA POLYMERASE ALPHA; E=4e-09 gb:AAD00325.2; (U79735) RNA polymerase ALPHA subunit [Xanthomonas; E=4e-09 COG: BH0162; COG0202 DNA-directed RNA polymerase alpha subunit/40 kD; E=2e-10 PFAM: PF00515; TPR Domain; E=0.87 PF01000; Bacterial RNA polymerase, alpha; E=6.5e-12 NP_864672.1 PMID: 7665516 best DB hits: BLAST: pir:T46898; queuine tRNA-ribosyltransferase (EC 2.4.2.29); E=2e-98 gb:AAA27705.1; (L33777) tRNA guanine transglycosylase [Zymomonas; E=2e-98 swissprot:P28720; TGT_ZYMMO QUEUINE TRNA-RIBOSYLTRANSFERASE; E=2e-98 COG: PA3823; COG0343 Queuine/archaeosine tRNA-ribosyltransferase; E=6e-99 PFAM: PF01702; Queuine tRNA-ribosyltransferase; E=1.2e-118 NP_864673.1 PMID: 9384377 best DB hits: BLAST: pir:A70029; hypothetical protein yvaX - Bacillus subtilis -----; E=4e-04 swissprot:Q90805; CNG1_CHICK CYCLIC NUCLEOTIDE GATED CHANNEL, CONE; E=0.52 NP_864675.1 PMID: 9679194 best DB hits: BLAST: gb:AAF55578.1; (AE003723) CG7698 gene product [Drosophila; E=3e-09 pir:E71119; hypothetical protein PH0724 - Pyrococcus horikoshii; E=1e-05 gb:AAF19420.1; AF203969_1 (AF203969) cleavage and polyadenylation; E=3e-05 COG: PH0724; COG1236 Predicted exonuclease of the beta-lactamase fold; E=1e-06 PH1404; COG1782 Predicted metal-dependent RNase, consists of a; E=0.001 VC0264; COG1236 Predicted exonuclease of the beta-lactamase fold; E=0.002 PFAM: PF00753; Metallo-beta-lactamase superfamil; E=0.23 NP_864676.1 best DB hits: PFAM: PF00242; DNA polymerase (viral) N-term; E=0.23 NP_864678.1 PMID: 2671663 best DB hits: BLAST: swissprot:P13650; DHGB_ACICA GLUCOSE DEHYDROGENASE-B; E=0.12 pdb:1CRU; B Chain B, Soluble Quinoprotein Glucose Dehydrogenase; E=0.12 pir:C69050; phycocyanin alpha phycocyanobilin lyase CpcE -; E=0.19 NP_864680.1 PMID: 7610040 best DB hits: BLAST: swissprot:P16681; PHNB_ECOLI PHNB PROTEIN ----- pir: C35718; E=7e-13 gb:AAG59306.1; AE005643_13 (AE005643) phnB gene product; E=8e-13 pir:B83475; hypothetical protein PA1353 [imported] - Pseudomonas; E=4e-12 COG: phnB; COG2764 Uncharacterized BCR; E=7e-14 NP_864681.1 PMID: 10192388 best DB hits: BLAST: pir:E72028; poly A polymerase - Chlamydophila pneumoniae (strains; E=9e-41 pir:B81744; poly(A) polymerase TC0077 [imported] -; E=3e-40 pir:A71481; probable poly A polymerase - Chlamydia trachomatis; E=5e-40 COG: CPn0845; COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; E=9e-42 PFAM: PF01743; Poly A polymerase; E=2.6e-50 NP_864684.1 catalyzes the formation of phosphoenolpyruvate from pyruvate NP_864687.1 PMID: 11371519 best DB hits: BLAST: pir:G69146; capsular polysaccharide biosynthesis protein -; E=2e-10 pir:E72354; probable hexosyltransferase (EC 2.4.1.-) TM0622 -; E=9e-10 pir:T44601; probable glycosyltransferase [imported] - Rhizobium; E=5e-08 COG: MTH362; COG0438 Predicted glycosyltransferases; E=2e-11 PFAM: PF00534; Glycosyl transferases group 1; E=1.3e-18 NP_864692.1 PMID: 9389475 best DB hits: BLAST: gb:AAB89763.1; (AE001000) signal-transducing histidine kinase; E=4e-29 embl:CAB62662.1; (AL133422) two-component sensor; E=9e-24 swissprot:Q9R6X3; PHYB_ANASP CYANOBACTERIAL PHYTOCHROME B -----; E=9e-22 COG: DR2419_2; COG0642 Sensory transduction histidine kinases; E=3e-21 PFAM: PF00785; PAC motif; E=7.7e-10 PF00512; His Kinase A (phosphoacceptor) doma; E=7.1e-09 PF02518; Histidine kinase-, DNA gyrase B-, p; E=3.1e-25 NP_864696.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins NP_864703.1 PMID: 10484179 best DB hits: BLAST: ddbj:BAB06095.1; (AP001515) BH2376~unknown conserved protein; E=4e-48 pir:G69884; conserved hypothetical protein ymdB - Bacillus subtilis; E=3e-46 pir:D75415; conserved hypothetical protein - Deinococcus radiodurans; E=4e-38 COG: BH2376; COG1692 Uncharacterized BCR; E=4e-49 PFAM: PF02640; Uncharacterized BCR, YmdB family COG; E=1.9e-75 NP_864704.1 PMID: 9823893 best DB hits: BLAST: gb:AAD29257.1; AF107093_2 (AF107093) ribosomal protein S1; E=3e-48 gb:AAF64246.1; (AF045481) 30S ribosomal protein S1; E=2e-45 swissprot:Q9ZD28; RS1_RICPR 30S RIBOSOMAL PROTEIN S1 -----; E=3e-45 COG: RP521; COG0539 Ribosomal protein S1; E=3e-46 PFAM: PF00575; S1 RNA binding domain; E=3.6e-06 NP_864706.1 best DB hits: BLAST: gb:AAG13524.1; AC068924_29 (AC068924) non-LTR retroelement; E=0.55 NP_864707.1 PMID: 10937442 best DB hits: BLAST: embl:CAA05166.1; (AJ002065) delta-9 desaturase [Spirulina; E=2e-38 gb:AAD00699.1; (U90417) delta 9 acyl-lipid fatty acid desaturase; E=3e-37 gb:AAB61353.1; (U36390) delta-9 desaturase [Synechococcus sp. PCC; E=3e-37 COG: sll0541; COG1398 Fatty-acid desaturase; E=4e-38 PFAM: PF01069; Fatty acid desaturase; E=4e-28 NP_864709.1 best DB hits: BLAST: pir:T26963; hypothetical protein ZK1151.2a - Caenorhabditis elegans; E=0.089 pir:T26964; hypothetical protein ZK1151.2b - Caenorhabditis elegans; E=0.089 ddbj:BAA96036.1; (AB040945) KIAA1512 protein [Homo sapiens]; E=0.50 PFAM: PF00817; impB/mucB/samB family; E=0.24 NP_864712.1 PMID: 11259647 best DB hits: BLAST: embl:CAB51627.1; (AJ245398) hypothetical protein [Sinorhizobium; E=0.28 swissprot:P29908; YNQ2_PARDE HYPOTHETICAL 22.9 KD PROTEIN IN NQO2; E=0.30 gb:AAG02153.1; AF212041_9 (AF212041) NADH dehydogenase [Zymomonas; E=0.73 NP_864715.1 PMID: 10952301 best DB hits: BLAST: pir:D82333; conserved hypothetical protein VC0370 [imported] -; E=0.18 gb:AAC62109.1; (AF092449) mucin-like protein [Heterodera; E=0.43 NP_864718.1 PMID: 10952301 best DB hits: BLAST: pir:E82493; conserved hypothetical protein VCA0172 [imported] -; E=0.002 gb:AAD30858.1; AF116251_1 (AF116251) BatA [Bacteroides fragilis]; E=0.012 pir:T21759; hypothetical protein F35C5.9 - Caenorhabditis elegans; E=0.012 COG: VCA0172; COG3035 Uncharacterized BCR; E=2e-04 PFAM: PF00092; von Willebrand factor type A domain; E=0.00013 NP_864720.1 PMID: 10984043 best DB hits: BLAST: pir:E82979; hypothetical protein PA5343 [imported] - Pseudomonas; E=5e-21 gb:AAG18860.1; (AE004989) Vng0267h [Halobacterium sp. NRC-1]; E=4e-14 pir:G75470; conserved hypothetical protein - Deinococcus radiodurans; E=3e-06 COG: PA5343; COG0451 Nucleoside-diphosphate-sugar epimerases; E=5e-22 PFAM: PF00367; phosphotransferase system, EIIB; E=0.66 NP_864721.1 PMID: 9204764 PMID: 7845208 best DB hits: BLAST: pir:B81914; probable periplasmic serine proteinase (EC 3.4.21.-); E=1e-21 pir:S74643; proteinase hhoA (EC 3.4.-.-) - Synechocystis sp. (strain; E=1e-18 swissprot:Q52894; DEGP_RHIME PROBABLE SERINE PROTEASE DO-LIKE; E=3e-17 COG: NMB0532; COG0265 Trypsin-like serine proteases, typically; E=5e-22 CT823; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=2e-18 XF2241; COG0265 Trypsin-like serine proteases, typically; E=4e-18 PFAM: PF01215; Cytochrome c oxidase subunit Vb; E=0.4 PF00089; Trypsin; E=0.029 PF00595; PDZ domain (Also known as DHR or G; E=1.7e-06 NP_864722.1 PMID: 9204764 PMID: 7845208 best DB hits: BLAST: gb:AAK02818.1; (AE006110) HtrA [Pasteurella multocida]; E=2e-05 pir:A82581; periplasmic proteinase XF2241 [imported] - Xylella; E=2e-05 swissprot:P45129; HTOA_HAEIN PROBABLE PERIPLASMIC SERINE PROTEASE; E=3e-05 COG: XF2241; COG0265 Trypsin-like serine proteases, typically; E=2e-06 htrA; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=5e-06 VC0566; COG0265 Trypsin-like serine proteases, typically; E=4e-05 PFAM: PF00595; PDZ domain (Also known as DHR o; E=9.6e-09 NP_864728.1 PMID: 10984043 best DB hits: BLAST: pir:G83487; hypothetical protein PA1268 [imported] - Pseudomonas; E=6e-68 gb:AAF97423.1; AF195522_1 (AF195522) B-cell mitogen precursor; E=2e-22 embl:CAB71312.1; (AJ130879) proline racemase [Clostridium; E=4e-18 COG: VNG0332C; COG0384 Predicted epimerase, PhzC/PhzF homolog; E=0.002 NP_864730.1 PMID: 7793970 best DB hits: BLAST: gb:AAG60941.1; AF322013_60 (AF322013) ID587 [Bradyrhizobium; E=1e-105 pir:S66261; X-Pro dipeptidyl-peptidase (EC 3.4.14.11) -; E=2e-23 ddbj:BAB10391.1; (AB006701) dipeptidyl peptidase IV-like protein; E=2e-23 COG: XF0015; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; E=2e-11 PFAM: PF00930; Dipeptidyl peptidase IV (DPP IV); E=3.8e-06 PF01738; Dienelactone hydrolase; E=0.0042 NP_864731.1 PMID: 9512878 best DB hits: BLAST: pir:T17425; probable thioesterase (EC 3.1.2.-) pltG - Pseudomonas; E=1e-14 gb:AAC01736.1; (AF040570) thioesterase [Amycolatopsis; E=2e-14 gb:AAG52991.1; (AF040570) RifR [Amycolatopsis mediterranei]; E=2e-14 COG: PA2411; COG3208 Predicted thioesterase; E=5e-14 PFAM: PF00753; Metallo-beta-lactamase superfami; E=0.15 PF00975; Thioesterase domain; E=7.3e-32 NP_864733.1 PMID: 94063929 best DB hits: BLAST: gb:AAA16877.1; (L13329) iduronate-2-sulfatase [Homo sapiens]; E=4e-62 gb:AAB33747.1; iduronate-2-sulfatase, IDS {EC 3.1.6.13} [human,; E=2e-61 gb:AAA37880.1; (L07921) iduronate sulfatase [Mus musculus]; E=2e-58 COG: PA2333; COG3119 Arylsulfatase A and related enzymes; E=2e-34 yejM; COG3083 Predicted hydrolase of alkaline phosphatase; E=6e-06 Rv3077; COG3119 Arylsulfatase A and related enzymes; E=3e-05 PFAM: PF00884; Sulfatase; E=1.4e-20 NP_864734.1 PMID: 10617197 best DB hits: BLAST: gb:AAC25927.2; (AC004681) O-GlcNAc transferase; E=1e-05 gb:AAB71463.1; (AC000098) Contains similarity to Rattus O-GlcNAc; E=3e-05 pir:T02544; hypothetical protein T26B15.1 - Arabidopsis thaliana; E=8e-05 COG: BH1262; COG0457 TPR-repeat-containing proteins; E=3e-04 PFAM: PF00515; TPR Domain; E=0.06 NP_864736.1 PMID: 8905231 best DB hits: BLAST: pir:S75103; hypothetical protein ssl0438 - Synechocystis sp.; E=0.028 COG: ssl0438; COG0222 Ribosomal protein L7/L12; E=0.003 NP_864737.1 PMID: 10086841 best DB hits: BLAST: ddbj:BAB05636.1; (AP001513) chitooligosaccharide deacetylase; E=0.003 ddbj:BAB05021.1; (AP001511) BH1302~unknown conserved protein; E=0.004 pir:A70081; conserved hypothetical protein yxkH - Bacillus subtilis; E=0.004 COG: BH1917; COG0726 Predicted xylanase/chitin deacetylase; E=3e-04 PFAM: PF01522; Polysaccharide deacetylase; E=0.055 NP_864741.1 PMID: 8541651 best DB hits: BLAST: pir:B75202; d-aminoacylase (aspartate, glutamate etc) PAB0090 -; E=3e-78 swissprot:P72349; NDAD_ALCXX D-AMINOACYLASE (N-ACYL-D-AMINO-ACID; E=4e-53 swissprot:P94211; NDED_ALCXX N-ACYL-D-GLUTAMATE DEACYLASE; E=1e-51 COG: PAB0087; COG1680 Beta-lactamase class C and other penicillin binding; E=1e-25 PFAM: PF01979; Adenine deaminase; E=3.9e-08 PF00744; Dihydroorotase-like; E=0.13 PF00144; Beta-lactamase; E=0.022 NP_864745.1 PMID: 9634230 best DB hits: BLAST: pir:T18551; saframycin Mx1 synthetase B - Myxococcus xanthus -----; E=1e-101 pir:H83343; probable non-ribosomal peptide synthetase PA2424; E=4e-96 gb:AAG02359.1; AF210249_18 (AF210249) peptide synthetase NRPS5-4-3; E=7e-93 COG: PA2424_1; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid; E=4e-97 Rv3826; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases; E=7e-82 VNG1339C; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid; E=9e-19 PFAM: PF00501; AMP-binding enzyme; E=1.7e-07 PF00550; Phosphopantetheine attachment sit; E=1.2e-12 NP_864748.1 PMID: 8590279 best DB hits: BLAST: gb:AAG27731.1; AF312031_1 (AF312031) multi-drug efflux transporter; E=5e-14 swissprot:Q55364; Y896_SYNY3 HYPOTHETICAL 49.7 KDA PROTEIN SLR0896; E=1e-13 pir:E82527; multidrug efflux protein XF2686 [imported] - Xylella; E=3e-13 COG: slr0896; COG0534 Na+-driven multidrug efflux pump; E=1e-14 PFAM: PF01554; Uncharacterized membrane protein fam; E=1.6e-15 NP_864749.1 Catalyzes the conversion of citrate to isocitrate NP_864750.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine NP_864752.1 PMID: 11859360 best DB hits: BLAST: pir:A30185; nuclear protein nuc2+ - fission yeast; E=0.38 pir:T11581; nuclear scaffold-like protein p76 - fission yeast; E=0.38 swissprot:P10505; NUC2_SCHPO NUCLEAR SCAFFOLD-LIKE PROTEIN P76; E=0.38 PFAM: PF00515; TPR Domain; E=2.1e-05 NP_864753.1 PMID: 1521767 best DB hits: BLAST: swissprot:P27433; GCPE_ECOLI GCPE PROTEIN (PROTEIN E) -----; E=6e-47 pir:F82283; gcpE protein VC0759 [imported] - Vibrio cholerae (group; E=1e-46 gb:AAK04094.1; (AE006237) GcpE [Pasteurella multocida]; E=2e-46 COG: gcpE; COG0821 Essential bacterial protein, involved in; E=6e-48 NP_864755.1 PMID: 10567266 best DB hits: BLAST: pir:D75557; conserved hypothetical protein - Deinococcus radiodurans; E=8e-57 pir:S77243; hypothetical protein slr1363 - Synechocystis sp. (strain; E=1e-32 pir:F83213; conserved hypothetical protein PA3455 [imported] -; E=9e-28 COG: DR0132; COG2326 Uncharacterized BCR; E=8e-58 NP_864759.1 PMID: 11181566 best DB hits: BLAST: gb:AAG41945.1; AF304053_1 (AF304053) heparan N-sulfatase [Mus; E=4e-62 gb:AAF29467.1; (AF156255) N-sulfoglucosamine sulfohydrolase [Mus; E=6e-62 gb:AAG41946.1; AF304054_1 (AF304054) mutant heparan N-sulfatase; E=1e-61 COG: Rv0296c; COG3119 Arylsulfatase A and related enzymes; E=7e-23 PAB0793; COG2194 Predicted membrane-associated, metal-dependent; E=0.002 BS_yfnI; COG1368 Phosphoglycerol transferase and related proteins,; E=0.002 PFAM: PF00884; Sulfatase; E=7.8e-22 NP_864760.1 best DB hits: BLAST: gb:AAD26901.1; AC007267_1 (AC007267) leucine-rich repeat; E=0.011 gb:AAF82144.1; AC034256_8 (AC034256) Contains similarity to F-box; E=0.040 pir:T08903; hypothetical protein T32A16.10 - Arabidopsis thaliana; E=0.25 NP_864762.1 PMID: 1630901,7493321 best DB hits: BLAST: swissprot:P39219; RLUA_ECOLI RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE; E=5e-15 gb:AAG54362.1; AE005182_11 (AE005182) orf, hypothetical protein; E=3e-14 pir:C82498; ribosomal large chain pseudouridine synthase A VCA0104; E=5e-14 COG: rluA; COG0564 Pseudouridylate synthases, 23S RNA-specific; E=5e-16 PFAM: PF00849; RNA pseudouridylate synthase; E=4.8e-31 NP_864763.1 PMID: 10993077 best DB hits: BLAST: pir:H82272; conserved hypothetical protein VC0853 [imported] -; E=3e-38 pir:D83259; conserved hypothetical protein PA3088 [imported] -; E=3e-36 gb:AAK02417.1; (AE006069) unknown [Pasteurella multocida]; E=5e-33 COG: VC0853; COG0061 Predicted kinase; E=2e-39 PFAM: PF01513; Domain of unknown function DUF15; E=6.2e-72 NP_864765.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate NP_864766.1 PMID: 8016276,10617198 best DB hits: BLAST: pir:S74538; geranylgeranyl pyrophosphate synthase - Synechocystis; E=3e-37 ddbj:BAA82613.1; (AB016093) geranylgeranyl diphosphate synthase; E=1e-36 embl:CAC10561.1; (AJ249453) gpp synthase large subunit [Mentha x; E=1e-35 COG: slr0739; COG0142 Geranylgeranyl pyrophosphate synthase; E=3e-38 PFAM: PF00348; Polyprenyl synthetase; E=1.6e-83 NP_864767.1 PMID: 10984043 best DB hits: BLAST: pir:C82778; exodeoxyribonuclease small subunit XF0660 [imported] -; E=1e-04 pir:E83139; exodeoxyribonuclease VII small subunit PA4042; E=0.001 gb:AAF12842.1; AF203881_15 (AF203881) exodeoxyribonuclease small; E=0.008 COG: XF0660; COG1722 Exonuclease VII small subunit; E=1e-05 NP_864769.1 PMID: 20075061 best DB hits: BLAST: ddbj:BAA89233.1; (AB021180) skeletal myosin heavy chain [Gallus; E=0.15 pir:A32491; myosin heavy chain 1, muscle - fruit fly (Drosophila; E=0.34 pir:B32491; myosin heavy chain 2, muscle - fruit fly (Drosophila; E=0.41 NP_864771.1 best DB hits: PFAM: PF00293; MutT-like domain; E=4.2e-24 NP_864776.1 PMID: 2453362 best DB hits: BLAST: swissprot:P09961; AMY1_DICTH ALPHA-AMYLASE 1 (1,4-ALPHA-D-GLUCAN; E=1e-120 ddbj:BAA22063.1; (D88253) 4-alpha-glucanotransferase; E=1e-114 ddbj:BAA22062.1; (D87907) 4-alpha-glucanotransferase [Pyrococcus; E=1e-112 COG: PAB0118; COG1449 Alpha-amylase/alpha-mannosidase; E=1e-111 Rv3031; COG1543 Uncharacterized ACR; E=1e-04 NP_864777.1 PMID: 9634230 best DB hits: BLAST: ddbj:BAB06223.1; (AP001515) serinethreonine protein kinase; E=4e-24 pir:D83637; serinethreonine protein kinase PpkA PA0074 [imported] -; E=1e-23 gb:AAD03499.2; (AF035395) serinethreonine protein kinase PpkA; E=2e-23 COG: BH2504_1; COG0515 Serine/threonine protein kinases; E=4e-25 PFAM: PF00069; Protein kinase domain; E=3.2e-44 NP_864779.1 best DB hits: PFAM: PF02746; Mandelate racemase / muconate lacton; E=0.04 NP_864781.1 PMID: 11823852 NP_864783.1 PMID: 1558950 best DB hits: BLAST: gb:AAB38544.1; (L41661) srrB [Synechococcus sp.]; E=5e-09 pir:A71678; probable response regulatory protein RP237 - Rickettsia; E=2e-08 gb:AAD51348.1; AF173226_5 (AF173226) SmeR [Stenotrophomonas; E=7e-08 COG: RP237_1; COG0784 CheY-like receiver domains; E=7e-09 PA2523; COG0745 Response regulators consisting of a CheY-like; E=9e-08 VC0622_4; COG0784 CheY-like receiver domains; E=9e-08 PFAM: PF00072; Response regulator receiver doma; E=1.1e-10 NP_864785.1 best DB hits: BLAST: pir:E83085; conserved hypothetical protein PA4488 [imported] -; E=0.81 NP_864789.1 PMID: 8905231 best DB hits: BLAST: pir:S77171; transposase sll1710 - Synechocystis sp. (strain PCC; E=1e-55 gb:AAB72024.1; (U38799) transposase [Synechocystis sp.]; E=7e-55 pir:S35005; probable transposase - Acetobacter xylinus insertion; E=1e-54 COG: sll1710; COG3293 Predicted transposase; E=9e-57 PFAM: PF01511; Transposase; E=9e-35 PF01675; Transposase; E=2.1e-31 NP_864791.1 best DB hits: BLAST: gb:AAD45539.1; U70376_1 (U70376) InsA [Streptomyces netropsis]; E=5e-33 gb:AAG60893.1; AF322013_12 (AF322013) ID460 [Bradyrhizobium; E=8e-33 ddbj:BAA19966.1; (D63923) transposase [Acetobacter pasteurianus]; E=1e-26 NP_864796.1 PMID: 11337471 best DB hits: BLAST: gb:AAK05788.1; AE006399_9 (AE006399) UNKNOWN PROTEIN [Lactococcus; E=1e-18 NP_864799.1 PMID: 10910347 best DB hits: BLAST: pir:C82162; conserved hypothetical protein VC1751 [imported] -; E=3e-56 swissprot:O52401; YGGB_EDWIC HYPOTHETICAL 30.6 KDA PROTEIN IN; E=4e-41 pir:A82318; conserved hypothetical protein VC0480 [imported] -; E=5e-40 COG: VC1751; COG0668 Small-conductance mechanosensitive channel; E=3e-57 PFAM: PF00924; Uncharacterized protein family UPF00; E=2.9e-71 NP_864801.1 PMID: 3026906 best DB hits: BLAST: pir:S74628; hypothetical protein slr1772 - Synechocystis sp. (strain; E=1e-122 pir:E82406; probable hydrolase VCA0877 [imported] - Vibrio cholerae; E=6e-50 swissprot:P12256; PAC_BACSH PENICILLIN ACYLASE (PENICILLIN V; E=1e-09 COG: slr1772; COG3049 Penicillin V acylase and related amidases; E=1e-124 PFAM: PF02275; Choloylglycine hydrolase; E=7.3e-95 NP_864803.1 PMID: 10567266 best DB hits: BLAST: pir:A75323; probable chromosome partitioning ATPase, ParA family -; E=1e-15 swissprot:P31856; YGI1_PSEPU HYPOTHETICAL 28.9 KD PROTEIN IN; E=1e-08 pir:S72958; hypothetical protein u0247b - Mycobacterium leprae; E=2e-08 COG: DR2040; COG1192 ATPases involved in chromosome partitioning; E=9e-17 BU326; COG2894 Septum formation inhibitor-activating ATPase; E=1e-04 VC2773; COG1192 ATPases involved in chromosome partitioning; E=2e-04 PFAM: PF02374; Anion-transporting ATPase; E=0.0058 PF00991; ParA family ATPase; E=2.6e-05 NP_864805.1 PMID: 8905231 best DB hits: BLAST: pir:S76621; hypothetical protein - Synechocystis sp. (strain PCC; E=9e-23 ddbj:BAA84086.1; (AB032065) hypothetical protein [Streptomyces; E=6e-21 embl:CAB61873.1; (AL133252) hypothetical protein SCE46.22; E=6e-21 COG: slr0092; COG0463 Glycosyltransferases involved in cell wall; E=8e-24 PAB1314; COG1215 Glycosyltransferases, probably involved in cell; E=2e-07 Rv2957; COG0463 Glycosyltransferases involved in cell wall; E=7e-07 PFAM: PF00535; Glycosyl transferase; E=2.6e-21 NP_864814.1 PMID: 7557402 best DB hits: BLAST: swissprot:Q00808; HET1_PODAN VEGETATIBLE INCOMPATIBILITY PROTEIN; E=7e-18 swissprot:P49695; PKWA_THECU SERINETHREONINE-PROTEIN; E=4e-13 gb:AAG40737.1; AF299085_1 (AF299085) Bap1 [Myxococcus xanthus]; E=2e-12 COG: slr0143_2; COG2319 WD40 repeat protein; E=2e-09 PFAM: PF00400; WD domain, G-beta repeat; E=0.2 PF01011; PQQ enzyme repeat; E=0.66 PF00400; WD domain, G-beta repeat; E=0.12 NP_864819.1 PMID: 8125952 best DB hits: BLAST: swissprot:P39662; HMPA_ALCEU FLAVOHEMOPROTEIN (HEMOGLOBIN-LIKE; E=7e-29 swissprot:P49852; HMPA_BACSU FLAVOHEMOPROTEIN (HEMOGLOBIN-LIKE; E=2e-26 swissprot:P26353; HMPA_SALTY FLAVOHEMOPROTEIN (HEMOGLOBIN-LIKE; E=2e-26 COG: BS_hmp_2; COG1018 Flavodoxin reductases (ferredoxin-NADPH; E=1e-27 hmp_2; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases); E=5e-25 BH1058_2; COG1018 Flavodoxin reductases (ferredoxin-NADPH; E=5e-23 PFAM: PF00970; Oxidoreductase FAD-binding doma; E=3.5e-24 PF01794; Ferric reductase like transmemb; E=0.76 PF00175; Oxidoreductase FAD/NAD-binding; E=2e-05 NP_864820.1 PMID: 10984043 best DB hits: BLAST: pir:G75333; 3-oxoacyl-acyl carrier protein reductase - Deinococcus; E=1e-16 gb:AAB82041.1; (U59236) unknown [Synechococcus sp. PCC 7942]; E=1e-16 pir:E83152; probable short-chain dehydrogenase PA3957 [imported] -; E=4e-16 COG: DR1943; COG1028 Dehydrogenases with different specificities (related; E=9e-18 BH1506; COG0300 Short-chain dehydrogenases of various substrate; E=3e-15 VNG1341G; COG1028 Dehydrogenases with different specificities; E=3e-14 PFAM: PF00106; short chain dehydrogenase; E=9.2e-43 NP_864821.1 PMID: 10952301 best DB hits: BLAST: pir:G82383; oxidoreductase, short-chain dehydrogenasereductase; E=2e-20 gb:AAG54602.1; AE005204_12 (AE005204) oxidoreductase; E=7e-20 gb:AAF18286.1; (AF088897) oxidoreductase; orf4 [Zymomonas; E=6e-19 COG: VCA1057; COG0300 Short-chain dehydrogenases of various substrate; E=2e-21 slr0315; COG1028 Dehydrogenases with different specificities; E=7e-20 PA4148; COG1028 Dehydrogenases with different specificities (related; E=3e-18 PFAM: PF00106; short chain dehydrogenase; E=5.3e-49 NP_864822.1 PMID: 11859360 best DB hits: BLAST: pir:T44271; glutathione peroxidase homolog [imported] -; E=4e-40 embl:CAB88451.1; (AL353815) glutathione peroxidase; E=4e-38 pir:F83541; probable glutathione peroxidase PA0838 [imported] -; E=5e-38 COG: PA0838; COG0386 Glutathione peroxidase; E=5e-39 PFAM: PF00255; Glutathione peroxidase; E=7e-54 NP_864823.1 best DB hits: BLAST: gb:AAG19229.1; (AE005019) Vng0754c [Halobacterium sp. NRC-1]; E=9e-06 gb:AAF75279.1; AF265353_1 (AF265353) byssal protein Dpfp1; E=0.21 ddbj:BAA94345.1; (AB035520) parchorin [Oryctolagus cuniculus]; E=0.50 PFAM: PF00089; Trypsin; E=0.58 NP_864826.1 modulates transcription in response to the NADH/NAD(+) redox state NP_864827.1 PMID: 8244397 PMID: 8325651 best DB hits: BLAST: gb:AAA16877.1; (L13329) iduronate-2-sulfatase [Homo sapiens]; E=1e-44 gb:AAA37880.1; (L07921) iduronate sulfatase [Mus musculus]; E=1e-44 gb:AAB33747.1; iduronate-2-sulfatase, IDS {EC 3.1.6.13} [human,; E=5e-44 COG: PA0031; COG3119 Arylsulfatase A and related enzymes; E=3e-38 BS_yqgS; COG1368 Phosphoglycerol transferase and related proteins,; E=0.001 aslA; COG3119 Arylsulfatase A and related enzymes; E=0.001 PFAM: PF00884; Sulfatase; E=3.2e-21 NP_864832.1 PMID: 10567266 best DB hits: BLAST: pir:C75455; carboxypeptidase-related protein - Deinococcus; E=1e-118 pir:E82699; carboxypeptidase related protein XF1282 [imported] -; E=8e-47 embl:CAA96915.1; (Z72725) ORF YGL203c [Saccharomyces cerevisiae]; E=1e-05 COG: DR0964; COG2939 Carboxypeptidase C (cathepsin A); E=1e-119 NP_864835.1 PMID: 9632260 best DB hits: BLAST: swissprot:O68284; MSCL_ERWCA LARGE-CONDUCTANCE MECHANOSENSITIVE; E=2e-13 pir:F82855; large-conductance mechanosensitive channel XF0039; E=4e-13 pir:F83069; conductance mechanosensitive channel PA4614 [imported] -; E=2e-12 COG: XF0039; COG1970 Large-conductance mechanosensitive channel; E=4e-14 PFAM: PF01741; Large-conductance mechanosens; E=1.4e-22 NP_864836.1 PMID: 10567266 best DB hits: BLAST: pir:B75555; probable lipaseesterase - Deinococcus radiodurans; E=4e-09 pir:E70914; probable lipO protein - Mycobacterium tuberculosis; E=2e-05 swissprot:P26223; XYNB_BUTFI ENDO-1,4-BETA-XYLANASE B (XYLANASE B); E=3e-04 COG: DR0133; COG0657 Acetyl esterase; E=4e-10 PFAM: PF00326; Prolyl oligopeptidase; E=0.067 PF01738; Dienelactone hydrolase; E=0.00016 PF00561; alpha/beta hydrolase fold; E=0.17 NP_864837.1 PMID: 9278503 best DB hits: BLAST: pir:C81315; hypothetical protein Cj1112c [imported] - Campylobacter; E=9e-33 embl:CAB80845.1; (AL161501) protein [Arabidopsis; E=4e-27 gb:AAD03449.1; (AF118223) contains similarity to Methanobacterium; E=5e-27 COG: Cj1112c; COG0229 Conserved domain frequently associated with peptide; E=8e-34 VNG1404G; COG0229 Conserved domain frequently associated with; E=5e-19 XF0849; COG0229 Conserved domain frequently associated with peptide; E=2e-17 PFAM: PF01641; Domain of unknown function DUF25; E=3.7e-46 NP_864838.1 PMID: 8590279 best DB hits: BLAST: swissprot:Q55979; Y712_SYNY3 HYPOTHETICAL 35.1 KD PROTEIN SLR0712; E=2e-23 gb:AAF20821.1; AF199025_2 (AF199025) LpiA [Sinorhizobium meliloti]; E=4e-17 gb:AAG55159.1; AE005259_10 (AE005259) orf, hypothetical protein; E=6e-14 COG: slr0712; COG0392 Predicted integral membrane protein; E=2e-24 NP_864842.1 PMID: 3481024 best DB hits: BLAST: gb:AAB82633.1; (AC002387) 5-enolpyruvylshikimate-3-phosphate; E=1e-73 pir:XUMUVS; 3-phosphoshikimate 1-carboxyvinyltransferase (EC; E=1e-72 swissprot:P05466; AROA_ARATH 3-PHOSPHOSHIKIMATE; E=1e-72 COG: VC1732; COG0128 5-enolpyruvylshikimate-3-phosphate synthase; E=2e-70 PFAM: PF00275; EPSP synthase (3-phosphoshikim; E=5.8e-128 NP_864848.1 PMID: 10761919 best DB hits: BLAST: gb:AAC09305.1; (AF047044) transposase [Nostoc sp. PCC; E=2e-41 pir:A32816; hypothetical protein, 33K - Pseudomonas atlantica; E=7e-35 pir:B81886; probable transposase NMA1185 [imported] - Neisseria; E=1e-30 PFAM: PF01548; Transposase; E=2.2e-05 PF02371; Transposase IS116/IS110/IS902; E=1.3e-25 NP_864852.1 PMID: 9054507 best DB hits: BLAST: swissprot:P37522; SOJ_BACSU SPORULATION INITIATION INHIBITOR; E=8e-50 swissprot:Q9K5N0; SOJ_BACHD SPORULATION INITIATION INHIBITOR; E=6e-48 swissprot:O83296; SOJ_TREPA PROTEIN SOJ HOMOLOG ----- pir:; E=6e-48 COG: BS_soj; COG1192 ATPases involved in chromosome partitioning; E=8e-51 PFAM: PF00142; 4Fe-4S iron sulfur cluster bindin; E=0.00021 PF02374; Anion-transporting ATPase; E=0.013 PF00991; ParA family ATPase; E=4.9e-21 NP_864853.1 PMID: 9634230 best DB hits: BLAST: swissprot:O53595; PARB_MYCTU PROBABLE CHROMOSOME PARTITIONING; E=6e-38 swissprot:P31857; PARB_PSEPU PROBABLE CHROMOSOME PARTITIONING; E=3e-37 swissprot:Q50201; PARB_MYCLE PROBABLE CHROMOSOME PARTITIONING; E=3e-37 COG: Rv3917c; COG1475 Predicted transcriptional regulators; E=5e-39 PFAM: PF02195; ParB-like nuclease domain; E=4.8e-30 PF01381; Helix-turn-helix; E=0.3 NP_864856.1 PMID: 9634230 best DB hits: BLAST: pir:G71532; probable threoninetyrosine-specific protein kinase (EC; E=2e-31 gb:AAF73573.1; (AE002326) serinethreonine protein kinase; E=2e-31 pir:D83637; serinethreonine protein kinase PpkA PA0074 [imported] -; E=6e-28 COG: CT301_1; COG0515 Serine/threonine protein kinases; E=2e-32 PFAM: PF00069; Protein kinase domain; E=5.7e-13 PF00989; PAS domain; E=3.8e-06 PF00785; PAC motif; E=0.74 NP_864858.1 PMID: 8432708 best DB hits: BLAST: pir:C82583; RNA polymerase sigma-H factor XF2239 [imported] -; E=1e-19 pir:S77368; transcription initiation factor sigma E slr1545 -; E=2e-19 gb:AAD42769.1; AF121849_1 (AF121849) SigG [Synechococcus sp. PCC; E=7e-18 COG: XF2239; COG1595 DNA-directed RNA polymerase specialized sigma; E=1e-20 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=1.5e-18 PF00140; Sigma-70 factor; E=0.55 NP_864881.1 PMID: 10567266 best DB hits: BLAST: pir:D75339; hypothetical protein - Deinococcus radiodurans (strain; E=9e-22 NP_864893.1 PMID: 8682784 best DB hits: BLAST: ddbj:BAB05587.1; (AP001513) BH1868~unknown conserved protein; E=7e-20 pir:T30571; hypothetical protein - Bacillus megaterium -----; E=3e-16 swissprot:P49855; YKKB_BACSU HYPOTHETICAL 20.1 KD PROTEIN IN; E=6e-16 COG: BH1868; COG1670 Acetyltransferases, including N-acetylases of; E=7e-21 PFAM: PF00583; Acetyltransferase (GNAT) family; E=6.3e-12 NP_864900.1 PMID: 12004073 best DB hits: BLAST: pir:A72359; conserved hypothetical protein - Thermotoga maritima; E=0.033 gb:AAA02747.1; (L13655) membrane protein [Saccharum hybrid; E=0.055 gb:AAF88090.1; AC025417_18 (AC025417) T12C24.28 [Arabidopsis; E=0.057 COG: TM0584; COG0705 Uncharacterized membrane protein (homolog of; E=0.003 PFAM: PF01694; Rhomboid family; E=3.4e-07 NP_864902.1 best DB hits: BLAST: pir:B70535; probable sulfatase (EC 3.1.6.-) atsD - Mycobacterium; E=0.0 pir:E70533; probable sulfatase (EC 3.1.6.-) atsB - Mycobacterium; E=1e-160 pir:B70643; probable sulfatase (EC 3.1.6.-) atsA - Mycobacterium; E=1e-137 COG: Rv0663; COG3119 Arylsulfatase A and related enzymes; E=0.0 PFAM: PF00884; Sulfatase; E=2e-129 NP_864907.1 PMID: 8169197 best DB hits: BLAST: pir:F70090; probable formaldehyde dehydrogenase (EC 1.2.1.46) yycR -; E=1e-151 swissprot:P46154; FADH_PSEPU GLUTATHIONE-INDEPENDENT FORMALDEHYDE; E=1e-140 pir:E82969; glutathione-independent formaldehyde dehydrogenase; E=1e-138 COG: BS_yycR; COG1063 Threonine dehydrogenase and related Zn-dependent; E=1e-152 PFAM: PF01262; Alanine dehydrogenase/pyridine nucl; E=0.17 PF00107; Zinc-binding dehydrogenases; E=3.1e-48 NP_864910.1 PMID: 7744061 best DB hits: BLAST: swissprot:P51691; ARS_PSEAE ARYLSULFATASE (ARYL-SULFATE; E=9e-73 pir:S69336; arylsulfatase (EC 3.1.6.1) - Pseudomonas aeruginosa; E=4e-71 pir:T45548; arylsulfatase (EC 3.1.6.1) [validated] - Klebsiella; E=2e-63 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=8e-74 PFAM: PF00884; Sulfatase; E=5.5e-93 NP_864913.1 PMID: 99242786 best DB hits: BLAST: gb:AAD30205.1; (AF094824) IbeB [Escherichia coli]; E=3e-33 swissprot:P77211; IBEB_ECOLI PROBABLE OUTER MEMBRANE LIPOPROTEIN; E=4e-33 gb:AAG54905.1; AE005237_1 (AE005237) resistance protein; E=1e-32 COG: ylcB; COG1538 Outer membrane protein; E=4e-34 PFAM: PF02321; Outer membrane efflux protein; E=1.3e-09 NP_864915.1 PMID: 7968531 PMID: 10187844 PMID: 10984043 best DB hits: BLAST: pir:H83071; RND multidrug efflux transporter MexD PA4598 [imported]; E=7e-91 embl:CAC14595.1; (AJ252200) RND protein; E=2e-85 swissprot:P52002; MEXB_PSEAE MULTIDRUG RESISTANCE PROTEIN MEXB; E=6e-85 COG: PA4598; COG0841 Cation/multidrug efflux pump; E=7e-92 PFAM: PF00873; AcrB/AcrD/AcrF family; E=7.9e-188 NP_864917.1 PMID: 7968531 best DB hits: BLAST: gb:AAD12178.1; (AF029405) periplasmic linker protein [Pseudomonas; E=8e-20 swissprot:P37636; YHIU_ECOLI HYPOTHETICAL 41.2 KD LIPOPROTEIN IN; E=3e-19 gb:AAG58654.1; AE005576_13 (AE005576) membrane protein; E=4e-19 COG: yhiU; COG0845 Membrane-fusion protein; E=3e-20 PFAM: PF00364; Biotin-requiring enzyme; E=0.0015 PF00529; HlyD family secretion protein; E=3.1e-06 NP_864919.1 PMID: 9679194 best DB hits: BLAST: swissprot:O58988; KCY_PYRHO CYTIDYLATE KINASE (CK) (CYTIDINE; E=1e-04 swissprot:Q58071; KCY_METJA CYTIDYLATE KINASE (CK) (CYTIDINE; E=0.005 swissprot:O05982; KCY_SULAC CYTIDYLATE KINASE (CK) (CYTIDINE; E=0.005 COG: PH1265; COG1102 Cytidylate kinase 2; E=1e-05 NP_864921.1 PMID: 9278503 PMID: 9097040 PMID: 8346225 best DB hits: BLAST: swissprot:Q06065; ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY; E=4e-87 gb:AAG45333.1; AF273214_1 (AF273214) SasR [Myxococcus xanthus]; E=2e-85 swissprot:P14375; HYDG_ECOLI transcriptional regulator; E=1e-81 COG: atoC; COG2204 AAA superfamily ATPases with N-terminal receiver; E=4e-88 PFAM: PF00072; Response regulator receiver doma; E=6.6e-32 PF00004; ATPase associated with va; E=0.008 PF00158; Sigma-54 interaction domain; E=9.4e-122 NP_864925.1 PMID: 7744081 best DB hits: BLAST: swissprot:P49053; PRXC_CURIN VANADIUM CHLOROPEROXIDASE (VCPO); E=2e-25 pdb:1VNS; Recombinant Apo-Chloroperoxidase From Curvularia; E=2e-25 pdb:1VNF; Chloroperoxidase From The Fungus Curvularia; E=1e-24 PFAM: PF00404; Dockerin type I repeat; E=0.4 PF02328; Vanadium chloroperoxidase; E=1.5e-20 NP_864926.1 PMID: 7610040 best DB hits: BLAST: pir:D83353; mannitol dehydrogenase PA2342 [imported] - Pseudomonas; E=1e-116 gb:AAC04472.1; (AF007800) mannitol dehydrogenase [Pseudomonas; E=1e-111 embl:CAA96356.1; (Z71688) ORF YNR073c [Saccharomyces cerevisiae]; E=1e-102 COG: PA2342; COG0246 Mannitol-1-phosphate/altronate dehydrogenases; E=1e-117 PFAM: PF01232; Mannitol dehydrogenase; E=9.3e-176 NP_864927.1 PMID: 10086841 NP_864928.1 PMID: 9687406 best DB hits: BLAST: embl:CAB61226.1; (Y17305) hypothetical protein [Bacillus; E=2e-15 swissprot:P43965; YAFM_HAEIN HYPOTHETICAL PROTEIN HI0217 -----; E=4e-04 pir:E81971; hypothetical protein NMA0532 [imported] - Neisseria; E=4e-04 COG: HI0217; COG1943 Predicted transposase; E=3e-05 PFAM: PF00637; 7-fold repeat in Clathrin and; E=0.77 PF02178; AT hook motif; E=0.72 NP_864932.1 PMID: 10567266 best DB hits: BLAST: pir:A75496; conserved hypothetical protein - Deinococcus radiodurans; E=2e-04 pir:C71139; hypothetical protein PH0326 - Pyrococcus horikoshii; E=2e-04 pir:A72430; hypothetical protein - Thermotoga maritima (strain MSB8); E=0.002 COG: DR0620_2; COG1305 transglutaminases, cysteine; E=1e-05 PFAM: PF01841; Transglutaminase-like superfam; E=0.014 NP_864934.1 best DB hits: BLAST: gb:AAD50452.1; AF170704_2 (AF170704) SpcB [Streptomyces; E=1e-04 gb:AAF63338.1; AF244574_1 (AF244574) myo-inositol-2-dehydrogenase; E=3e-04 gb:AAD13550.1; (AF080235) oxidoreductase homolog [Streptomyces; E=0.001 COG: BH0710; COG0673 Predicted dehydrogenases and related proteins; E=2e-04 PFAM: PF01408; Oxidoreductase, NAD-bind; E=5.8e-11 NP_864937.1 PMID: 8905232 best DB hits: BLAST: swissprot:P77381; YBES_ECOLI HYPOTHETICAL 55.3 KDA PROTEIN IN; E=0.093 gb:AAG54981.1; AE005243_10 (AE005243) enzyme of; E=0.31 gb:AAG53090.1; (AF284647) phosphoprotein [Newcastle disease; E=0.67 NP_864939.1 PMID: 9735342 best DB hits: BLAST: swissprot:P77319; HSCC_ECOLI CHAPERONE PROTEIN HSCC (HSC62); E=1e-92 gb:AAG54984.1; AE005244_2 (AE005244) dnaK protein; E=3e-91 embl:CAA06391.1; (AJ005129) dnaK [Thermotoga maritima]; E=3e-88 COG: ybeW; COG0443 Molecular chaperone; E=1e-93 PFAM: PF01869; BadF/BadG/BcrA/BcrD ATPase fa; E=0.37 PF00012; Hsp70 protein; E=9.1e-147 NP_864941.1 best DB hits: BLAST: gb:AAD20116.1; (AC006201) unknown protein [Arabidopsis thaliana]; E=0.030 pir:T16263; hypothetical protein F35D11.3 - Caenorhabditis elegans; E=0.096 pir:T39047; hypothetical protein SPAC6F6.13c - fission yeast; E=0.12 NP_864942.1 PMID: 10567266 best DB hits: BLAST: pir:H75402; conserved hypothetical protein - Deinococcus radiodurans; E=7e-12 pir:E82441; conserved hypothetical protein VCA0582 [imported] -; E=2e-05 pir:C81983; hypothetical protein NMA0633 [imported] - Neisseria; E=2e-04 COG: DR1391; COG2501 Uncharacterized ACR; E=7e-13 PFAM: PF01479; S4 domain; E=2.8e-06 NP_864943.1 best DB hits: BLAST: pir:T45676; hypothetical protein F14P22.150 - Arabidopsis thaliana; E=0.043 PFAM: PF02455; Hexon-associated protein (III; E=0.046 NP_864945.1 PMID: 8905231 best DB hits: BLAST: pir:A58519; hypothetical 345 protein - Streptomyces coelicolor; E=2e-15 pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=1e-14 pir:T17478; hypothetical protein PCZA361.11 - Amycolatopsis orientalis; E=2e-14 COG: PA1112; COG2133 Glucose/sorbosone dehydrogenases; E=7e-13 PFAM: PF00138; Legume lectins alpha domain; E=0.059 NP_864946.1 best DB hits: PFAM: PF00404; Dockerin type I repeat; E=0.0038 NP_864954.1 best DB hits: BLAST: pir:B69196; conserved hypothetical protein MTH72 - Methanobacterium; E=0.51 pir:T31314; hypothetical protein 2 - Cenarchaeum symbiosum -----; E=0.64 gb:AAB63645.1; (AC001645) DNA binding protein (CDC27SH) isolog; E=0.66 PFAM: PF00515; TPR Domain; E=0.017 NP_864956.1 best DB hits: BLAST: gb:AAF47944.1; (AE003482) CG13708 gene product [Drosophila; E=0.70 NP_864958.1 PMID: 7476194 best DB hits: BLAST: pir:G70066; capsular polysaccharide biosynthesis homolog ywqD -; E=2e-28 swissprot:Q45409; EPSB_BURSO EPS I POLYSACCHARIDE EXPORT PROTEIN; E=2e-28 pir:G82262; probable exopolysaccharide biosynthesis protein VC0937; E=8e-28 COG: BS_ywqD; COG0489 ATPases involved in chromosome partitioning; E=2e-29 VNG0946G; COG0455 ATPases involved in chromosome partitioning; E=3e-08 BH3027; COG2894 Septum formation inhibitor-activating ATPase; E=6e-08 PFAM: PF00142; 4Fe-4S iron sulfur cluster bindin; E=0.016 PF00991; ParA family ATPase; E=0.3 NP_864962.1 PMID: 10931327 best DB hits: BLAST: embl:CAB63303.1; (AJ251712) glycosyltransferase-like protein; E=1e-47 embl:CAB63284.1; (AJ251713) glycosyltransferase-like protein; E=2e-47 gb:AAD47916.1; AF127522_3 (AF127522) ; E=1e-39 COG: jhp0094; COG0463 Glycosyltransferases involved in cell wall; E=6e-32 RP339; COG0463 Glycosyltransferases involved in cell wall biogenesis; E=4e-04 PAB1314; COG1215 Glycosyltransferases, probably involved in cell; E=8e-04 PFAM: PF00535; Glycosyl transferase; E=1.9e-28 NP_864963.1 acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit) NP_864964.1 PMID: 8905231 best DB hits: BLAST: pir:S74778; hypothetical protein slr1077 - Synechocystis sp. (strain; E=5e-34 gb:AAD43836.1; AF076290_6 (AF076290) mannosyltransferase; E=4e-16 embl:CAB43611.1; (AJ239004) galactosyl transferase [Streptococcus; E=9e-11 COG: slr1077; COG0438 Predicted glycosyltransferases; E=5e-35 PFAM: PF00534; Glycosyl transferases group 1; E=5e-21 NP_864966.1 PMID: 10382966 best DB hits: BLAST: pir:D72511; probable hexosyltransferase (EC 2.4.1.-) APE2066; E=2e-09 ddbj:BAB06407.1; (AP001516); E=1e-07 pir:E72354; probable hexosyltransferase (EC 2.4.1.-) TM0622 -; E=2e-06 COG: APE2066; COG0438 Predicted glycosyltransferases; E=1e-10 PFAM: PF00534; Glycosyl transferases group 1; E=1.2e-25 NP_864967.1 PMID: 10360571 best DB hits: BLAST: pir:E72354; probable hexosyltransferase (EC 2.4.1.-) TM0622 -; E=3e-22 pir:C70036; capsular polysaccharide biosynthesis homolog yveN -; E=7e-12 pir:A82676; conserved hypothetical protein XF1470 [imported] -; E=2e-10 COG: TM0622; COG0438 Predicted glycosyltransferases; E=3e-23 PFAM: PF00534; Glycosyl transferases group 1; E=6.1e-38 NP_864968.1 PMID: 9097039 best DB hits: BLAST: gb:AAG55028.1; AE005248_9 (AE005248) receptor; E=4e-61 gb:AAG54539.1; AE005200_1 (AE005200) Z0271 gene product; E=1e-60 swissprot:P28917; YDCC_ECOLI H REPEAT-ASSOCIATED PROTEIN IN; E=1e-60 PFAM: PF01811; Transposase; E=1.3e-65 NP_864971.1 PMID: 8905231 best DB hits: BLAST: pir:S77382; hypothetical protein sll1456 - Synechocystis sp. (strain; E=3e-12 pir:S76193; hypothetical protein - Synechocystis sp. (strain PCC; E=2e-08 pir:H70669; hypothetical protein Rv2955c - Mycobacterium; E=4e-07 COG: sll1456; COG0500 SAM-dependent methyltransferases; E=3e-13 NP_864973.1 PMID: 11259647 best DB hits: BLAST: pir:E72354; probable hexosyltransferase (EC 2.4.1.-) TM0622 -; E=0.001 gb:AAD19925.1; (AF105116) glucosyl transferase; E=0.002 embl:CAB75373.1; (AL139298) transferase [Streptomyces; E=0.002 COG: TM0622; COG0438 Predicted glycosyltransferases; E=9e-05 PFAM: PF00534; Glycosyl transferases group 1; E=1e-09 NP_864974.1 PMID: 9308175 best DB hits: BLAST: gb:AAD43837.1; AF076290_7 (AF076290) glycosyltransferase; E=5e-17 gb:AAB84956.1; (AE000829) LPS biosynthesis RfbU related protein; E=3e-05 pir:H69158; LPS biosynthesis RfbU related protein - Methanobacterium; E=3e-05 COG: MTH450; COG0438 Predicted glycosyltransferases; E=3e-06 PFAM: PF00534; Glycosyl transferases group 1; E=5.8e-18 NP_864975.1 PMID: 10360571 best DB hits: BLAST: pir:E72354; probable hexosyltransferase (EC 2.4.1.-) TM0622 -; E=5e-20 swissprot:Q9R9N1; LPSE_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS; E=4e-10 swissprot:Q9R9N0; LPSD_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS; E=1e-09 COG: TM0622; COG0438 Predicted glycosyltransferases; E=4e-21 PFAM: PF00534; Glycosyl transferases group 1; E=1.1e-22 NP_864976.1 PMID: 11214968 best DB hits: BLAST: pir:S76193; hypothetical protein - Synechocystis sp. (strain PCC; E=0.011 gb:AAB95303.1; (AC003105) unknown protein [Arabidopsis thaliana]; E=0.023 COG: sll1530; COG0500 SAM-dependent methyltransferases; E=0.001 NP_864979.1 best DB hits: BLAST: embl:CAB92986.1; (AL357152) hypothetical protein SCH18.03c; E=0.19 NP_864981.1 best DB hits: BLAST: pir:D69143; LPS biosynthesis RfbU related protein - Methanobacterium; E=8e-18 embl:CAB01935.1; (Z79692) ExpE4 [Sinorhizobium meliloti]; E=2e-16 embl:CAB01932.1; (Z79692) ExpE7 [Sinorhizobium meliloti]; E=4e-13 COG: MTH338; COG0438 Predicted glycosyltransferases; E=8e-19 PFAM: PF00534; Glycosyl transferases group 1; E=1.3e-20 NP_864986.1 PMID: 8843436 best DB hits: BLAST: embl:CAB92986.1; (AL357152) hypothetical protein SCH18.03c; E=7e-16 embl:CAB57489.1; (Y18930) hypothetical protein [Sulfolobus; E=3e-13 pir:S76193; hypothetical protein - Synechocystis sp. (strain PCC; E=1e-08 COG: sll1530; COG0500 SAM-dependent methyltransferases; E=1e-09 APE1011; COG2518 Protein-L-isoaspartate carboxylmethyltransferase; E=0.001 NP_864987.1 PMID: 11206551 best DB hits: BLAST: gb:AAG57095.1; AE005429_6 (AE005429) glycosyl transferase; E=1e-20 gb:AAD47915.1; AF127522_2 (AF127522) ; E=6e-18 pir:E70346; mannosyltransferase B - Aquifex aeolicus ----- gb:; E=1e-06 COG: aq_515; COG0438 Predicted glycosyltransferases; E=1e-07 PFAM: PF00534; Glycosyl transferases group 1; E=5.9e-06 NP_864988.1 PMID: 11337471 best DB hits: BLAST: gb:AAK04309.1; AE006259_3 (AE006259) UDP-glucose 4-epimerase; E=1e-23 swissprot:Q57664; GALE_METJA UDP-GLUCOSE 4-EPIMERASE; E=1e-23 gb:AAG18701.1; (AE004975) UDP-glucose 4-epimerase; GalE2; E=3e-23 COG: MJ0211; COG0451 Nucleoside-diphosphate-sugar epimerases; E=1e-24 MTH631; COG1087 UDP-glucose 4-epimerase; E=5e-20 PH0378; COG0451 Nucleoside-diphosphate-sugar epimerases; E=1e-19 PFAM: PF01073; 3-beta hydroxysteroid dehydrogenase; E=0.64 PF00106; short chain dehydrogenase; E=0.0027 PF01370; NAD dependent epimerase/dehydratase; E=4.2e-20 NP_864990.1 PMID: 9384377 best DB hits: BLAST: swissprot:P37515; MAA_BACSU PROBABLE MALTOSE O-ACETYLTRANSFERASE; E=6e-08 pir:E82411; hexapeptide-repeat containing-acetyltransferase VCA0836; E=2e-07 swissprot:Q58464; YA64_METJA HYPOTHETICAL PROTEIN MJ1064 -----; E=4e-07 COG: BS_yyaI; COG0110 Acetyltransferases (the isoleucine patch; E=5e-09 lacA; COG0110 Acetyltransferases (the isoleucine patch superfamily); E=3e-04 BH3001; COG0110 Acetyltransferases (the isoleucine patch; E=4e-04 PFAM: PF00132; Bacterial transferase hexapeptide (f; E=0.29 NP_864991.1 PMID: 10222209 best DB hits: BLAST: ddbj:BAA77727.1; (AB008676) flippase [Escherichia coli]; E=3e-05 gb:AAG57097.1; AE005429_8 (AE005429) O antigen flippase Wzx; E=3e-05 embl:CAA64437.1; (X94981) aceE [Acetobacter xylinus]; E=0.17 NP_864994.1 PMID: 8022265 best DB hits: BLAST: gb:AAG35060.1; AF314183_2 (AF314183) dTDP-glucose-4,6-dehydratase; E=1e-110 gb:AAF33465.1; (AF233324) 89% identity with E. coli; E=1e-107 swissprot:P55294; RFBB_NEIMB DTDP-GLUCOSE 4,6-DEHYDRATASE -----; E=1e-106 COG: NMB0063; COG1088 dTDP-D-glucose 4,6-dehydratase; E=1e-107 PFAM: PF01073; 3-beta hydroxysteroid dehydro; E=0.53 PF00106; short chain dehydrogenase; E=0.073 PF01370; NAD dependent epimerase/dehyd; E=6e-141 NP_864999.1 PMID: 8905231 best DB hits: BLAST: gb:AAD10232.1; (U72147) GDP-D-mannose dehydratase; E=1e-88 pir:S74433; GDP-D-mannose dehydratase 1 - Synechocystis sp. (strain; E=6e-86 gb:AAD44219.1; AF143772_25 (AF143772) mdhtA [Mycobacterium avium]; E=5e-83 COG: sll1212; COG1089 GDP-D-mannose dehydratase; E=6e-87 DR0711; COG0451 Nucleoside-diphosphate-sugar epimerases; E=1e-17 Rv0112; COG1089 GDP-D-mannose dehydratase; E=2e-13 PFAM: PF01370; NAD dependent epimerase/dehydratase; E=3.5e-16 NP_865002.1 PMID: 10984043 best DB hits: BLAST: pir:A83252; probable UDP-glucoseGDP-mannose dehydrogenase WbpA; E=1e-124 pir:H72358; lipopolysaccharide biosynthesis protein - Thermotoga; E=4e-93 pir:F71153; probable Vi polysaccharide biosynthesis protein -; E=8e-85 COG: PA3159; COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; E=1e-125 VNG0046G; COG1004 Predicted UDP-glucose 6-dehydrogenase; E=9e-24 PFAM: PF00984; UDP-glucose/GDP-mannose dehydro; E=3.9e-131 NP_865005.1 PMID: 10718197 best DB hits: BLAST: gb:AAD10232.1; (U72147) GDP-D-mannose dehydratase; E=1e-112 pir:S74433; GDP-D-mannose dehydratase 1 - Synechocystis sp. (strain; E=1e-111 gb:AAD43839.1; AF076290_9 (AF076290) GDP-D-mannose; E=1e-102 COG: sll1212; COG1089 GDP-D-mannose dehydratase; E=1e-112 Cj1319; COG0451 Nucleoside-diphosphate-sugar epimerases; E=9e-14 Rv0112; COG1089 GDP-D-mannose dehydratase; E=1e-13 PFAM: PF01370; NAD dependent epimerase/dehydratase; E=1.3e-14 NP_865008.1 PMID: 9862812 best DB hits: BLAST: pdb:1BWS; A Chain A, Crystal Structure Of; E=8e-90 gb:AAG57112.1; AE005431_4 (AE005431) nucleotide; E=2e-89 pir:D55239; cpsB 5'-region hypothetical protein 2 - Escherichia coli; E=2e-89 COG: wcaG; COG0451 Nucleoside-diphosphate-sugar epimerases; E=2e-90 Cj1131c; COG1087 UDP-glucose 4-epimerase; E=2e-11 slr0583; COG0451 Nucleoside-diphosphate-sugar epimerases; E=3e-11 PFAM: PF01370; NAD dependent epimerase/dehydratase; E=0.071 NP_865010.1 best DB hits: BLAST: gb:AAB99952.1; (AF035443) wee1 homolog [Xenopus laevis]; E=0.31 NP_865012.1 best DB hits: BLAST: gb:AAG19823.1; (AE005067) Vng1537c [Halobacterium sp. NRC-1]; E=4e-27 pir:E75148; hypothetical protein PAB2116 - Pyrococcus abyssi (strain; E=9e-25 gb:AAG20566.1; (AE005127) Vng2502c [Halobacterium sp. NRC-1]; E=8e-24 COG: VNG1537C; COG1078 HD superfamily phosphohydrolases; E=4e-28 NP_865013.1 PMID: 7683645 PMID: 3284790 best DB hits: BLAST: swissprot:O31458; YBFT_BACSU HYPOTHETICAL 27.3 KD PROTEIN IN; E=2e-55 ddbj:BAB04139.1; (AP001508) N-acetylglucosamine-6-phosphate; E=4e-54 swissprot:O35000; NAGB_BACSU GLUCOSAMINE-6-PHOSPHATE ISOMERASE; E=8e-53 COG: BS_ybfT; COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate; E=2e-56 PFAM: PF01182; Glucosamine-6-phosphate isome; E=7.9e-96 NP_865014.1 PMID: 8843436 best DB hits: BLAST: embl:CAB88464.1; (AL353815) integral membrane protein; E=2e-07 pir:S74882; hypothetical protein sll1151 - Synechocystis sp. (strain; E=3e-07 gb:AAB90453.1; (AE001050) conserved hypothetical protein; E=1e-04 COG: sll1151; COG1808 Uncharacterized ACR; E=3e-08 NP_865016.1 PMID: 1304369 PMID: 11258796 best DB hits: BLAST: pir:E82497; ribose operon repressor VCA0132 [imported] - Vibrio; E=3e-40 gb:AAA62106.1; (L10328) rbs repressor [Escherichia coli]; E=7e-40 swissprot:P25551; RBSR_ECOLI RIBOSE OPERON REPRESSOR -----; E=9e-40 COG: VCA0132; COG1609 Transcriptional regulators; E=2e-41 PFAM: PF01047; MarR family; E=0.088 PF02796; Helix-turn-helix domain of re; E=0.72 PF00356; Bacterial regulatory proteins; E=2e-09 NP_865018.1 PMID: 10871362 best DB hits: BLAST: swissprot:Q9Z8M3; RS1_CHLPN 30S RIBOSOMAL PROTEIN S1 -----; E=1e-139 swissprot:O84100; RS1_CHLTR 30S RIBOSOMAL PROTEIN S1 -----; E=1e-138 pir:A81710; ribosomal protein S1 TC0373 [imported] - Chlamydia; E=1e-137 COG: CPn0315; COG0539 Ribosomal protein S1; E=1e-140 PFAM: PF00575; S1 RNA binding domain; E=0.0018 PF01479; S4 domain; E=0.83 PF00575; S1 RNA binding domain; E=1.4e-24 NP_865020.1 PMID: 11214968 best DB hits: BLAST: gb:AAG20070.1; (AE005086) Vng1869c [Halobacterium sp. NRC-1]; E=0.18 NP_865021.1 PMID: 11759840 best DB hits: BLAST: swissprot:Q9R6X3; PHYB_ANASP CYANOBACTERIAL PHYTOCHROME B -----; E=3e-32 gb:AAB89763.1; (AE001000) signal-transducing histidine kinase; E=4e-32 pir:E75617; sensor histidine kinase - Deinococcus radiodurans; E=6e-30 COG: DRA0205; COG0642 Sensory transduction histidine kinases; E=6e-31 PFAM: PF00672; HAMP domain; E=0.0036 PF00512; His Kinase A (phosphoacceptor) doma; E=7.2e-08 PF02518; Histidine kinase-, DNA gyrase B-, p; E=2e-35 NP_865022.1 PMID: 9278513 best DB hits: BLAST: pir:B69158; sensory transduction regulatory protein -; E=8e-11 swissprot:Q55169; RCP1_SYNY3 RESPONSE REGULATOR RCP1 -----; E=1e-09 gb:AAB89775.1; (AE001001) response regulator [Archaeoglobus; E=2e-08 COG: MTH445; COG0784 CheY-like receiver domains; E=8e-12 PFAM: PF00072; Response regulator receiver doma; E=8.1e-11 NP_865024.1 PMID: 10360571 best DB hits: BLAST: swissprot:Q9Z4S2; ARGC_THENE N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE; E=4e-69 swissprot:Q9X2A2; ARGC_THEMA N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE; E=5e-69 pir:E83562; N-acetyl-gamma-glutamyl-phosphate reductase PA0662; E=1e-67 COG: TM1782; COG0002 Acetylglutamate semialdehyde dehydrogenase; E=4e-70 PFAM: PF01408; Oxidoreductase, NAD-bi; E=0.016 PF01118; Semialdehyde dehydrogenase, N; E=8.3e-31 PF02774; Semialdehyde dehydrogenase, d; E=2.8e-27 NP_865025.1 best DB hits: BLAST: pir:T36892; hypothetical protein SCI51.29 - Streptomyces coelicolor; E=6e-28 pir:G72244; hypothetical protein - Thermotoga maritima (strain MSB8); E=3e-15 embl:CAC12021.1; (AL445065) conserved hypothetical protein; E=1e-07 NP_865028.1 PMID: 9023666 best DB hits: BLAST: swissprot:P55632; Y4QK_RHISN INTEGRASERECOMBINASE Y4QK; E=3e-39 swissprot:P55429; Y4EF_RHISN INTEGRASERECOMBINASE Y4EF; E=1e-32 prf:2115270D; integrase [Weeksella zoohelcum]; E=6e-23 COG: PAB0255; COG0582 Integrase; E=1e-20 PFAM: PF02899; Phage integrase, N-terminal S; E=0.3 PF00589; Phage integrase; E=8e-31 NP_865029.1 PMID: 1646375 best DB hits: BLAST: prf:2115270C; transposase [Weeksella zoohelcum]; E=1e-33 swissprot:P55631; Y4QJ_RHISN TRANSPOSASE Y4QJ -----; E=1e-32 swissprot:P24607; T801_PSESH TRANSPOSASE FOR INSERTION SEQUENCE; E=2e-09 PFAM: PF01096; Transcription factor S-II (TFIIS); E=0.19 NP_865032.1 PMID: 3122782 PMID: 3118900 best DB hits: BLAST: swissprot:P00345; LDH_BACME L-LACTATE DEHYDROGENASE ----- pir:; E=3e-49 swissprot:P20619; LDHX_BACPS L-LACTATE DEHYDROGENASE X -----; E=6e-47 swissprot:P16115; LDH_THEMA L-LACTATE DEHYDROGENASE ----- pir:; E=3e-46 COG: TM1867; COG0039 Malate/lactate dehydrogenases; E=2e-47 PFAM: PF00056; lactate/malate dehydrogenase, NA; E=6.7e-46 PF02866; lactate/malate dehydrogenase, al; E=2.4e-36 NP_865033.1 best DB hits: BLAST: pir:C75206; L-fuculose-phosphate aldolase (EC 4.1.2.17) - Pyrococcus; E=3e-18 pir:E71241; L-fuculose-phosphate aldolase (EC 4.1.2.17) - Pyrococcus; E=5e-18 gb:AAK03448.1; (AE006174) unknown [Pasteurella multocida]; E=2e-16 COG: PAB0117; COG0235 Ribulose-5-phosphate 4-epimerase and related; E=2e-19 PFAM: PF00596; Class II Aldolase and Adducin N-t; E=2.4e-21 NP_865034.1 PMID: 8491708 best DB hits: BLAST: swissprot:Q03512; CCML_SYNP7 CARBON DIOXIDE CONCENTRATING; E=1e-04 swissprot:P41792; EUTN_SALTY ETHANOLAMINE UTILIZATION PROTEIN; E=8e-04 swissprot:P77633; EUTN_ECOLI ETHANOLAMINE UTILIZATION PROTEIN; E=0.007 NP_865036.1 PMID: 11206551 best DB hits: BLAST: swissprot:P77633; EUTN_ECOLI ETHANOLAMINE UTILIZATION PROTEIN; E=0.005 gb:AAG57565.1; AE005474_13 (AE005474) detox protein [Escherichia; E=0.005 swissprot:P41792; EUTN_SALTY ETHANOLAMINE UTILIZATION PROTEIN; E=0.008 NP_865037.1 PMID: 11677609 best DB hits: BLAST: swissprot:P41793; EUTE_SALTY ETHANOLAMINE UTILIZATION PROTEIN EUTE; E=5e-84 gb:AAG57564.1; AE005474_12 (AE005474) ethanolamine utilization; E=1e-83 swissprot:P77445; EUTE_ECOLI ETHANOLAMINE UTILIZATION PROTEIN EUTE; E=5e-83 COG: eutE; COG1012 NAD-dependent aldehyde dehydrogenases; E=5e-84 PFAM: PF00171; Aldehyde dehydrogenase; E=0.21 NP_865038.1 PMID: 11677609 best DB hits: BLAST: swissprot:P41792; EUTN_SALTY ETHANOLAMINE UTILIZATION PROTEIN EUTN; E=4e-09 swissprot:P77633; EUTN_ECOLI ETHANOLAMINE UTILIZATION PROTEIN EUTN; E=5e-09 gb:AAD39013.1; (AF026270) PduN [Salmonella enterica serovar; E=5e-09 NP_865039.1 PMID: 8226682 PMID: 8702268 best DB hits: BLAST: ddbj:BAB06911.1; (AP001518) acetate kinase [Bacillus halodurans]; E=4e-75 swissprot:P37877; ACKA_BACSU ACETATE KINASE (ACETOKINASE) -----; E=2e-74 swissprot:P71104; ACKA_CLOAB ACETATE KINASE (ACETOKINASE) -----; E=6e-70 COG: BH3192; COG0282 Acetate kinase; E=3e-76 PFAM: PF00871; Acetokinase; E=2.5e-119 NP_865040.1 best DB hits: PFAM: PF00936; Bacterial microcompartments pr; E=1.2e-26 NP_865041.1 PMID: 7868611 best DB hits: BLAST: swissprot:P37448; PDUA_SALTY PROPANEDIOL UTILIZATION PROTEIN; E=2e-11 gb:AAD39009.1; (AF026270) PduJ [Salmonella enterica serovar; E=2e-11 gb:AAB84107.2; (AF026270) PduA [Salmonella enterica serovar; E=2e-11 PFAM: PF00936; Bacterial microcompartments pr; E=1.2e-43 NP_865043.1 PMID: 10360571 best DB hits: BLAST: pir:E72385; hypothetical protein TM0375 - Thermotoga maritima; E=7e-42 gb:AAD39011.1; (AF026270) PduL [Salmonella enterica serovar; E=3e-32 NP_865044.1 PMID: 10931310 best DB hits: BLAST: embl:CAB96011.1; (AL360055) transcriptional regulatory; E=3e-28 embl:CAC21630.1; (AL512667) deoR-family transcriptional; E=6e-25 ddbj:BAB05272.1; (AP001512) transcriptional regulator (DeoR; E=1e-24 COG: BH1553; COG1349 Transcriptional regulators of sugar metabolism; E=1e-25 PFAM: PF00392; Bacterial regulatory proteins, gnt; E=0.00039 PF01022; Bacterial regulatory protein, arsR; E=0.028 PF00455; Bacterial regulatory proteins, deo; E=2.1e-68 NP_865047.1 PMID: 20196006 best DB hits: BLAST: swissprot:P29939; YCB6_PSEDE HYPOTHETICAL 15.0 KD PROTEIN IN COBO; E=0.55 PFAM: PF00892; Integral membrane protein DUF6; E=7.1e-05 NP_865048.1 best DB hits: BLAST: gb:AAC98350.1; (AF075462) ADP-ribosylation factor-directed GTPase; E=0.22 gb:AAF55676.2; (AE003726) CG7240 gene product [Drosophila; E=0.39 NP_865052.1 PMID: 2116366 best DB hits: BLAST: pdb:2AZA; A Chain A, Azurin (Oxidized) ----- pdb: 2AZA B Chain; E=0.012 swissprot:P34097; AZUR_PSEPU AZURIN ----- pir: A37338 azurin -; E=0.024 pdb:1NZR; A Chain A, Azurin Mutant With Trp 48 Replaced By Met; E=0.033 COG: PA4922; COG3241 Azurin; E=0.008 PFAM: PF00127; Copper binding proteins, plasto; E=5e-06 PF00034; Cytochrome c; E=0.0036 NP_865054.1 PMID: 9634230 best DB hits: BLAST: pir:F70837; probable sulfatase (EC 3.1.6.-) atsG - Mycobacterium; E=3e-23 gb:AAG17207.1; AF217204_1 (AF217204) heparan sulfate sulfamidase; E=3e-17 gb:AAG41945.1; AF304053_1 (AF304053) heparan N-sulfatase [Mus; E=2e-16 COG: Rv0296c; COG3119 Arylsulfatase A and related enzymes; E=3e-24 TM1703; COG1368 Phosphoglycerol transferase and related proteins,; E=4e-04 ydeN; COG3119 Arylsulfatase A and related enzymes; E=6e-04 PFAM: PF00884; Sulfatase; E=9.8e-18 NP_865056.1 PMID: 10747959 best DB hits: BLAST: swissprot:P37545; YABD_BACSU DEOXYRIBONUCLEASE YABD; E=2e-45 pir:H72349; conserved hypothetical protein - Thermotoga maritima; E=1e-37 ddbj:BAB03773.1; (AP001507) BH0054~unknown conserved protein; E=6e-37 COG: BS_yabD; COG0084 Mg-dependent DNase; E=2e-46 PFAM: PF01026; TatD related DNase; E=1.8e-81 NP_865058.1 PMID: 10629178 PMID: 3537313 PMID: 9878437 best DB hits: BLAST: gb:AAF15533.1; AF196490_3 (AF196490) phosphate regulon response; E=2e-35 swissprot:Q52990; PHOB_RHIME PHOSPHATE REGULON TRANSCRIPTIONAL; E=2e-31 embl:CAA11074.1; (AJ223073) phosphate regulatory protein; E=9e-31 COG: PA5360; COG0745 Response regulators consisting of a CheY-like; E=5e-31 phoB; COG0745 Response regulators consisting of a CheY-like receiver; E=7e-31 TM1655; COG0745 Response regulators consisting of a CheY-like; E=1e-30 PFAM: PF00072; Response regulator receiver doma; E=2.5e-28 PF00486; Transcriptional regulatory prote; E=1.2e-24 NP_865061.1 PMID: 11214968 best DB hits: BLAST: pir:B72316; conserved hypothetical protein - Thermotoga maritima; E=0.001 pir:T50902; Mg protoporphyrin IX monomethyl ester oxidative cyclase; E=0.011 embl:CAA70016.1; (Y08763) methyltransferase [Streptomyces; E=0.013 COG: TM0938; COG0500 SAM-dependent methyltransferases; E=1e-04 NP_865062.1 PMID: 8557349 best DB hits: BLAST: swissprot:O06822; G3P_MYCTU GLYCERALDEHYDE 3-PHOSPHATE; E=2e-99 swissprot:P46795; G3P_BORBU GLYCERALDEHYDE 3-PHOSPHATE; E=2e-99 swissprot:P46713; G3P_MYCLE GLYCERALDEHYDE 3-PHOSPHATE; E=6e-99 COG: Rv1436; COG0057 Glyceraldehyde-3-phosphate; E=1e-101 PFAM: PF01408; Oxidoreductase, NAD-bindi; E=0.11 PF00044; Glyceraldehyde 3-phosphate dehyd; E=2.2e-118 PF02800; Glyceraldehyde 3-phosphate dehyd; E=5.5e-109 NP_865064.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication NP_865065.1 PMID: 7601846 best DB hits: BLAST: pir:T36391; hypothetical protein SCE94.31c - Streptomyces coelicolor; E=4e-11 pir:S75559; hypothetical protein slr0812 - Synechocystis sp. (strain; E=3e-10 gb:AAG28531.1; AF198621_2 (AF198621) 32 kDa replication; E=7e-10 COG: slr0812; COG1521 transcriptional regulators, homologs of; E=3e-11 TM0883; COG1521 transcriptional regulators, homologs of Bvg; E=7e-09 NMB2075_2; COG1521 transcriptional regulators, homologs of; E=6e-07 NP_865068.1 PMID: 1650910 best DB hits: BLAST: pir:A83418; ribonuclease H PA1815 [imported] - Pseudomonas; E=1e-04 pdb:1RBR; Ribonuclease H (E.C.3.1.26.4) Mutant With His 62; E=2e-04 swissprot:P23329; RNH_SALTY RIBONUCLEASE HI (RNASE HI); E=5e-04 COG: PA1815; COG0328 Ribonuclease HI; E=1e-05 NP_865069.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain NP_865071.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis NP_865072.1 PMID: 11016950 best DB hits: BLAST: gb:AAG20939.1; (AE005160) Vng6305c [Halobacterium sp. NRC-1]; E=3e-42 embl:CAC23039.1; (AL512964) homolog of ORF_f223 [Escherichia; E=2e-16 pir:C82625; conserved hypothetical protein XF1894 [imported] -; E=1e-15 COG: XF1894; COG0602 Organic radical activating enzymes; E=1e-16 PAB2273; COG2896 Molybdenum cofactor biosynthesis enzyme; E=4e-05 MJ1645; COG0602 Organic radical activating enzymes; E=3e-04 PFAM: PF02143; Radical activating enzyme; E=1e-06 PF01444; moaA / nifB / pqqE family; E=0.0011 NP_865073.1 PMID: 12024217 NP_865075.1 PMID: 11759840 best DB hits: BLAST: pir:S77541; hypothetical protein slr1207 - Synechocystis sp. (strain; E=0.007 COG: slr1207; COG0845 Membrane-fusion protein; E=7e-04 PFAM: PF02163; Sterol-regulatory element bindi; E=0.79 PF00364; Biotin-requiring enzyme; E=0.046 NP_865076.1 PMID: 11206551 best DB hits: BLAST: gb:AAG54840.1; AE005229_3 (AE005229) membrane spanning; E=0.072 gb:AAG09745.1; AF232237_3 (AF232237) membrane fusion protein; E=0.23 pir:E70342; cation efflux system (czcB-like) - Aquifex aeolicus; E=0.43 PFAM: PF00364; Biotin-requiring enzyme; E=0.0014 PF00529; HlyD family secretion protein; E=2.9e-05 NP_865077.1 best DB hits: BLAST: pir:T35248; probable oxidoreductase - Streptomyces coelicolor; E=1e-40 gb:AAK01518.1; (AF241171) oxidoreductase [Pseudomonas; E=0.001 swissprot:P73069; Y48L_SYNY3 YCF48-LIKE PROTEIN ----- pir:; E=0.003 PFAM: PF02012; BNR repeat; E=0.039 NP_865078.2 catalyzes the interconversion of D-xylose to D-xylulose NP_865081.1 PMID: 1387377 PMID: 2556375 PMID: 2556376 PMID: 7590298 best DB hits: BLAST: gb:AAK05260.1; AE006348_5 (AE006348); E=3e-22 swissprot:P18579; MURB_BACSU UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE; E=2e-19 ddbj:BAB06283.1; (AP001515) UDP-N-acetylenolpyruvoylglucosamine; E=6e-17 COG: BS_murB; COG0812 UDP-N-acetylmuramate dehydrogenase; E=2e-20 PFAM: PF02215; UDP-N-acetylenolpyruvoylglucos; E=1.5e-34 PF02873; UDP-N-acetylenolpyruvoylglucos; E=0.3 NP_865083.1 PMID: 11181566 best DB hits: BLAST: gb:AAG41945.1; AF304053_1 (AF304053) heparan N-sulfatase [Mus; E=5e-36 gb:AAG41946.1; AF304054_1 (AF304054) mutant heparan N-sulfatase; E=2e-35 gb:AAF29467.1; (AF156255) N-sulfoglucosamine sulfohydrolase [Mus; E=1e-34 COG: Rv0296c; COG3119 Arylsulfatase A and related enzymes; E=2e-27 VC2041; COG3083 Predicted hydrolase of alkaline phosphatase; E=0.003 aslA; COG3119 Arylsulfatase A and related enzymes; E=0.005 PFAM: PF00884; Sulfatase; E=3.3e-16 PF01974; tRNA intron endonuclease, catal; E=0.44 PF00884; Sulfatase; E=8.6e-21 NP_865087.1 PMID: 7482699 best DB hits: BLAST: ddbj:BAA91718.1; (AK001486) unnamed protein product [Homo; E=0.007 ddbj:BAB08640.1; (AB009048) gene_id:K15E6.5~unknown protein; E=0.012 pir:T00095; hypothetical protein KIAA0470 - human ----- ddbj:; E=0.052 PFAM: PF00498; FHA domain; E=1.8e-12 NP_865088.1 PMID: 1835671 best DB hits: BLAST: pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=3e-43 ddbj:BAB06223.1; (AP001515) serinethreonine protein kinase; E=7e-43 swissprot:P71584; PKNB_MYCTU SERINETHREONINE-PROTEIN; E=5e-41 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=3e-44 PFAM: PF00069; Protein kinase domain; E=6e-61 NP_865090.1 PMID: 10192928 PMID: 3276686 best DB hits: BLAST: swissprot:Q9Z9J0; TRUA_BACHD TRNA PSEUDOURIDINE SYNTHASE A; E=6e-39 gb:AAK04584.1; AE006284_2 (AE006284) tRNA pseudouridine synthase A; E=5e-38 swissprot:O84469; TRUA_CHLTR TRNA PSEUDOURIDINE SYNTHASE A; E=1e-37 COG: BH0167; COG0101 Pseudouridylate synthase (tRNA psi55); E=6e-40 PFAM: PF01416; tRNA pseudouridine synthase; E=5.6e-49 NP_865091.1 best DB hits: PFAM: PF01982; Domain of unknown function DUF120; E=0.28 NP_865092.1 PMID: 11953415 best DB hits: BLAST: gb:AAC45602.1; (U75949) suppressor for copper-sensitivity C; E=0.011 pir:S75747; hypothetical protein slr0565 - Synechocystis sp.; E=0.032 ddbj:BAA20493.1; (AB004696) 27kDa outer membrane protein; E=0.11 NP_865095.1 PMID: 3902795 best DB hits: BLAST: pir:C83489; probable transcriptional regulator PA1261 [imported] -; E=2e-26 pir:D69749; transcriptional regulator AraCXylS family homolog ybfI -; E=2e-11 pir:F82380; transcriptional regulator AraCXylS family VCA1074; E=4e-11 COG: PA1261; COG2207 AraC-type DNA-binding domain-containing proteins; E=2e-27 BS_adaA; COG2169 Adenosine deaminase; E=3e-10 BH3842_2; COG2207 AraC-type DNA-binding domain-containing proteins; E=6e-10 PFAM: PF00165; Bacterial regulatory helix-turn-heli; E=5.4e-23 NP_865102.1 PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=3e-25 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=7e-23 gb:AAG58881.1; AE005599_13 (AE005599) sulfatase; E=1e-22 COG: yidJ; COG3119 Arylsulfatase A and related enzymes; E=4e-23 PA0924; COG3083 Predicted hydrolase of alkaline phosphatase; E=3e-04 PFAM: PF00884; Sulfatase; E=2.5e-44 NP_865103.1 PMID: 8112578 best DB hits: BLAST: swissprot:P43478; CGKA_ALTCA KAPPA-CARRAGEENASE PRECURSOR -----; E=1e-61 gb:AAC27890.1; (AF007559) kappa-carrageenase precursor [Zobellia; E=3e-56 pir:T18265; endo-1,3(4)-beta-glucanase (EC 3.2.1.6) - Clostridium; E=8e-07 COG: TM0024; COG2273 Beta-glucanase/Beta-glucan synthetase; E=1e-05 PFAM: PF00722; Glycosyl hydrolases family 16; E=4.5e-07 NP_865107.1 PMID: 8244397 best DB hits: BLAST: gb:AAA16877.1; (L13329) iduronate-2-sulfatase [Homo sapiens]; E=6e-52 gb:AAB33747.1; iduronate-2-sulfatase, IDS {EC 3.1.6.13} [human,; E=3e-51 gb:AAF47771.1; (AE003478) CG12014 gene product [Drosophila; E=7e-49 COG: PA0031; COG3119 Arylsulfatase A and related enzymes; E=1e-33 PFAM: PF00884; Sulfatase; E=8.6e-28 NP_865109.1 PMID: 11206551 best DB hits: BLAST: gb:AAG58528.1; AE005565_3 (AE005565) protein of glp regulon; E=2e-08 swissprot:P54493; YQGP_BACSU HYPOTHETICAL 56.4 KD PROTEIN IN; E=1e-07 pir:A82363; glpG protein VC0099 [imported] - Vibrio cholerae (group; E=9e-07 COG: VC0099; COG0705 Uncharacterized membrane protein (homolog of; E=9e-08 PFAM: PF01694; Rhomboid family; E=3.4e-26 NP_865110.1 best DB hits: PFAM: PF00034; Cytochrome c; E=8.2e-05 NP_865111.1 PMID: 12024217 best DB hits: BLAST: pir:S62202; hypothetical protein 1 - Methanosarcina barkeri -----; E=0.003 pir:H82720; outer membrane protein XF1123 [imported] - Xylella; E=0.008 swissprot:Q57099; PP26_BRUME 26 KDA PERIPLASMIC IMMUNOGENIC; E=0.093 COG: XF1123; COG2968 Uncharacterized BCR; E=8e-04 NP_865112.1 PMID: 10391943 best DB hits: BLAST: gb:AAD15447.1; (AC006068) unknown protein [Arabidopsis thaliana]; E=8e-21 gb:AAF56179.1; (AE003744) CG10371 gene product [Drosophila; E=3e-17 ddbj:BAB09879.1; (AB013392) contains similarity to unknown; E=4e-16 COG: PH1732; COG2453 Predicted protein-tyrosine phosphatase; E=3e-10 PFAM: PF00782; Dual specificity phosphatase, cataly; E=1.3e-08 NP_865113.1 PMID: 8487301 best DB hits: BLAST: swissprot:P14218; DLDH_PSEFL DIHYDROLIPOAMIDE DEHYDROGENASE (E3; E=1e-108 pdb:1LPF; A Chain A, Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4); E=1e-108 pir:A45796; dihydrolipoamide dehydrogenase (EC 1.8.1.4) -; E=1e-108 COG: PA1587; COG1249 Dihydrolipoamide dehydrogenase/glutathione; E=1e-109 PFAM: PF00070; Pyridine nucleotide-disulphide; E=1.5e-94 PF02852; Pyridine nucleotide-disulphide; E=5.8e-55 NP_865117.1 PMID: 2824445 best DB hits: BLAST: swissprot:P10441; LPXB_ECOLI LIPID-A-DISACCHARIDE SYNTHASE -----; E=6e-31 pir:A82101; lipid-A-disaccharide synthase VC2247 [imported] - Vibrio; E=1e-30 pir:SYECLA; lipid-A-disaccharide synthase (EC 2.4.1.182) -; E=2e-30 COG: VC2247; COG0763 Lipid A disaccharide synthetase; E=1e-31 PFAM: PF02684; Lipid-A-disaccharide syntheta; E=1.3e-37 NP_865119.1 PMID: 8552028 best DB hits: BLAST: pir:D82244; sensory box sensor histidine kinase VC1084 [imported] -; E=4e-15 ddbj:BAB05639.1; (AP001513) two-component sensor histidine kinase; E=1e-13 pir:S60595; FixL protein - Rhizobium leguminosarum ----- gb:; E=3e-13 COG: VC1084; COG0642 Sensory transduction histidine kinases; E=3e-16 PFAM: PF00672; HAMP domain; E=2.9e-10 PF00512; His Kinase A (phosphoacceptor) doma; E=3.2e-08 PF02518; Histidine kinase-, DNA gyrase B-, p; E=7.9e-33 NP_865120.1 PMID: 8346225 best DB hits: BLAST: swissprot:Q06065; ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY; E=5e-83 gb:AAC28085.1; (AF100457) response regulator [Myxococcus xanthus]; E=2e-81 swissprot:Q00934; PILR_PSEAE TYPE 4 FIMBRIAE EXPRESSION REGULATORY; E=4e-79 COG: atoC; COG2204 AAA superfamily ATPases with N-terminal receiver; E=4e-84 VC2137; COG1221 NtrC family transcriptional regulators, ATPase; E=5e-67 PFAM: PF00072; Response regulator receiver doma; E=4.1e-28 PF00158; Sigma-54 interaction domain; E=4.8e-131 NP_865121.1 PMID: 11181566 best DB hits: BLAST: gb:AAG41945.1; AF304053_1 (AF304053) heparan N-sulfatase [Mus; E=9e-29 gb:AAF29467.1; (AF156255) N-sulfoglucosamine sulfohydrolase [Mus; E=2e-28 gb:AAG41946.1; AF304054_1 (AF304054) mutant heparan N-sulfatase; E=3e-28 COG: Rv0296c; COG3119 Arylsulfatase A and related enzymes; E=9e-29 TM1703; COG1368 Phosphoglycerol transferase and related proteins,; E=2e-04 yejM; COG3083 Predicted hydrolase of alkaline phosphatase; E=0.001 PFAM: PF00884; Sulfatase; E=2.2e-23 NP_865122.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate NP_865125.1 best DB hits: BLAST: gb:AAF60349.1; AF242549_1 (AF242549) DNA-dependent RNA polymerase; E=0.22 NP_865127.1 PMID: 8501030 best DB hits: BLAST: embl:CAA75536.1; (Y15252) nitratenitrite regulatory protein; E=3e-25 embl:CAB59507.1; (AL132648) two-component response; E=4e-25 pir:F83160; two-component response regulator NarL PA3879 [imported]; E=4e-25 COG: PA3879; COG2197 Response regulators consisting of a CheY-like; E=4e-26 narP; COG2197 Response regulators consisting of a CheY-like receiver; E=9e-23 DR0891; COG2197 Response regulators consisting of a CheY-like; E=1e-22 PFAM: PF00072; Response regulator receiver doma; E=7.4e-26 PF00325; Bacterial regulatory proteins, c; E=0.038 PF01381; Helix-turn-helix; E=0.45 NP_865130.1 PMID: 8098035 best DB hits: BLAST: swissprot:Q57695; DAPA_METJA DIHYDRODIPICOLINATE SYNTHASE (DHDPS); E=5e-68 swissprot:O67216; DAPA_AQUAE DIHYDRODIPICOLINATE SYNTHASE (DHDPS); E=5e-66 swissprot:Q04796; DAPA_BACSU DIHYDRODIPICOLINATE SYNTHASE (DHDPS); E=5e-58 COG: MJ0244; COG0329 Dihydrodipicolinate synthetase/N-acetylneuraminate; E=5e-69 PFAM: PF00701; Dihydrodipicolinate synthetase famil; E=4.6e-119 NP_865132.1 PMID: 9537320 best DB hits: BLAST: pir:D70357; conserved hypothetical protein aq_648 - Aquifex aeolicus; E=2e-86 ddbj:BAB07130.1; (AP001518) BH3411~unknown conserved protein in; E=7e-81 embl:CAB92115.1; (AL356334) conserved hypothetical protein; E=2e-75 COG: aq_648; COG1060 Thiamine biosynthesis enzyme ThiH and related; E=2e-87 NP_865133.1 PMID: 1644192 best DB hits: BLAST: gb:AAB41844.1; (U61168) 4-hydroxybenzoate octaprenyltransferase; E=3e-34 ddbj:BAB05369.1; (AP001512) 4-hydroxybenzoate; E=4e-34 pir:E70304; 4-hydroxybenzoate octaprenyltransferase - Aquifex; E=2e-31 COG: BH1650; COG0382 4-hydroxybenzoate polyprenyltranferase; E=4e-35 AF2036; COG0109 Polyprenyltransferase (cytochrome oxidase assembly; E=0.006 PFAM: PF01040; UbiA prenyltransferase; E=2e-37 NP_865134.1 PMID: 3040734 best DB hits: BLAST: ddbj:BAB05370.1; (AP001512) 3-octaprenyl-4-hydroxybenzoate; E=2e-39 pir:H83144; probable aromatic acid decarboxylase PA4019 [imported] -; E=1e-37 gb:AAB41845.1; (U61168) 3-octaprenyl-4-hydroxybenzoate; E=2e-35 COG: BH1651; COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; E=1e-40 PFAM: PF02441; Flavoprotein; E=6.5e-28 NP_865135.1 PMID: 9045837 best DB hits: BLAST: pir:F75277; ubiquinonemenaquinone biosynthesis methyltransferase -; E=2e-44 ddbj:BAB05368.1; (AP001512) 2-heptaprenyl-1,4-naphthoquinone; E=9e-43 ddbj:BAA25267.1; (AB003188) 2-hexaprenyl-1,4-naphthoquinone; E=3e-41 COG: DR2405; COG2226 Methylase involved in ubiquinone/menaquinone; E=2e-45 slr0407; COG0500 SAM-dependent methyltransferases; E=7e-10 PFAM: PF01209; ubiE/COQ5 methyltransferase f; E=2.7e-66 NP_865136.1 PMID: 9371463 PMID: 7603433 best DB hits: BLAST: pir:E69106; hypothetical protein MTH1793 - Methanobacterium; E=3e-05 pir:T44528; phosphoglycolate phosphatase (EC 3.1.3.18) [imported] -; E=3e-04 gb:AAG42459.1; AF308467_5 (AF308467) Gph [Klebsiella aerogenes]; E=3e-04 COG: MTH1793; COG0546 Predicted phosphatases; E=3e-06 PFAM: PF00702; haloacid dehalogenase-like hydrolas; E=1.1e-16 NP_865137.1 PMID: 1447140 PMID: 9742696 best DB hits: BLAST: gb:AAD40344.1; U88088_22 (U88088) OmpA [Pseudomonas alcaligenes]; E=5e-08 swissprot:Q10557; Y899_MYCTU HYPOTHETICAL 33.6 KDA PROTEIN RV0899; E=3e-07 gb:AAD39495.1; AF145799_1 (AF145799) immunogenic 23 kDa; E=1e-06 COG: Rv0899; COG2885 Outer membrane protein and related; E=2e-08 aq_1002; COG1360 Flagellar motor protein; E=2e-07 XF0363; COG2885 Outer membrane protein and related; E=1e-05 PFAM: PF01486; K-box region; E=0.5 PF00691; OmpA family; E=4.9e-06 NP_865140.1 best DB hits: BLAST: pir:C83140; hypothetical protein PA4048 [imported] - Pseudomonas; E=2e-04 swissprot:Q9ZC99; Y867_RICPR HYPOTHETICAL PROTEIN RP867 -----; E=0.003 swissprot:P29938; YCBV_PSEDE HYPOTHETICAL 25.1 KDA PROTEIN IN COBV; E=0.007 NP_865141.1 best DB hits: BLAST: pir:E64732; yacG protein - Escherichia coli (strain K-12) -----; E=9e-08 gb:AAK02173.1; (AE006044) unknown [Pasteurella multocida]; E=8e-05 pir:E82078; conserved hypothetical protein VC2429 [imported] -; E=2e-04 COG: yacG; COG3024 Uncharacterized BCR; E=9e-09 NP_865142.1 PMID: 7854424 best DB hits: BLAST: pir:E81447; transcription elongation factor Cj0287c [imported] -; E=1e-27 swissprot:P43881; GREA_HAEIN TRANSCRIPTION ELONGATION FACTOR GREA; E=3e-27 gb:AAK02799.1; (AE006109) GreA [Pasteurella multocida]; E=4e-27 COG: Cj0287c; COG0782 Transcription elongation factor; E=1e-28 PFAM: PF01272; Prokaryotic transcription elongatio; E=2.6e-47 NP_865145.1 best DB hits: PFAM: PF01957; Protein of unknown function DUF107; E=0.0039 NP_865146.1 PMID: 10484179 best DB hits: BLAST: ddbj:BAB05075.1; (AP001511) BH1356~unknown conserved protein; E=4e-10 swissprot:P54465; YQEZ_BACSU HYPOTHETICAL 46.5 KD PROTEIN IN; E=4e-08 COG: BS_yqeZ_1; COG1030 Periplasmic serine proteases (ClpP class); E=2e-06 BH1356_2; COG1585 Membrane protein implicated in regulation of; E=8e-06 PFAM: PF01957; Protein of unknown function DUF107; E=0.00013 NP_865147.1 PMID: 8920929 best DB hits: BLAST: swissprot:Q10901; EAT1_CAEEL EXCITATORY AMINO ACID TRANSPORTER; E=3e-53 pir:T29633; hypothetical protein C12D12.2 - Caenorhabditis elegans; E=8e-53 gb:AAB41909.1; (U35250) CeGlt-2 [Caenorhabditis elegans]; E=1e-52 COG: aq_1330; COG1301 Na+/H+-dicarboxylate symporters; E=5e-49 PFAM: PF00375; Sodium:dicarboxylate symporter fami; E=5.2e-115 NP_865149.1 PMID: 9665719 best DB hits: BLAST: gb:AAC64266.1; (AF059612) deoxyribonuclease gamma [Xenopus; E=1e-19 gb:AAB00496.1; (L40823) DNL1L gene product [Homo sapiens]; E=5e-17 gb:AAB17022.1; (U06846) XIB [Homo sapiens]; E=7e-17 PFAM: PF01181; Deoxyribonuclease I (DNase I); E=1.3e-10 NP_865151.1 PMID: 8063110 best DB hits: BLAST: swissprot:Q57142; C554_NITEU CYTOCHROME C-554 PRECURSOR (C554); E=0.003 pdb:1FT5; A Chain A, Crystal Structure Of The Oxidized State Of; E=0.003 NP_865152.1 PMID: 9298659 best DB hits: BLAST: swissprot:P80874; GS69_BACSU GENERAL STRESS PROTEIN 69 (GSP69); E=6e-29 pir:C83506; probable oxidoreductase PA1127 [imported] - Pseudomonas; E=6e-23 pir:H83328; probable oxidoreductase PA2535 [imported] - Pseudomonas; E=7e-20 COG: BS_yhdN; COG0667 Predicted oxidoreductases (related to aryl-alcohol; E=6e-30 TM1743; COG0656 Aldo/keto reductases, related to diketogulonate; E=3e-07 XF0367; COG0667 Predicted oxidoreductases (related to aryl-alcohol; E=4e-07 PFAM: PF00248; Aldo/keto reductase; E=1.3e-12 NP_865157.1 PMID: 11759840 best DB hits: BLAST: pir:T14004; trfA protein - slime mold (Dictyostelium discoideum); E=0.45 PFAM: PF00515; TPR Domain; E=0.00018 NP_865160.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate NP_865164.1 PMID: 8012593 best DB hits: BLAST: ddbj:BAB07419.1; (AP001519) glycerophosphoryl diester; E=3e-22 pir:E69827; glycerophosphodiester phosphodiesterase homolog yhdW -; E=5e-21 embl:CAC16430.1; (AL450165) secreted hydrolase; E=5e-16 COG: BH3700; COG0584 Glycerophosphoryl diester phosphodiesterase; E=3e-23 NP_865170.1 PMID: 10484179 best DB hits: BLAST: ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=2e-09 ddbj:BAB05884.1; (AP001514) BH2165~unknown conserved protein; E=6e-09 ddbj:BAB04429.1; (AP001509) BH0710~unknown conserved protein; E=1e-07 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=2e-10 PFAM: PF01408; Oxidoreductase, NAD-bin; E=5.1e-18 NP_865171.1 best DB hits: PFAM: PF01011; PQQ enzyme repeat; E=0.14 NP_865173.1 PMID: 10952301 best DB hits: BLAST: pir:G82190; conserved hypothetical protein VC1503 [imported] -; E=5e-59 pir:H83504; hypothetical protein PA1116 [imported] - Pseudomonas; E=2e-57 ddbj:BAB05048.1; (AP001511) BH1329~unknown conserved protein in; E=2e-17 COG: VC1503; COG2996 Uncharacterized BCR; E=5e-60 NP_865174.1 PMID: 7579621 best DB hits: BLAST: swissprot:P46358; RFAY_XANCP PROBABLE RNA POLYMERASE SIGMA FACTOR; E=0.001 swissprot:Q44583; NCCH_ALCXX RNA POLYMERASE SIGMA FACTOR NCCH; E=0.11 embl:CAB65647.1; (AL136149) probable ECF-family sigma factor.; E=0.14 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=1.8e-11 NP_865178.1 PMID: 9359865 best DB hits: BLAST: gb:AAB89115.1; (AE000956) thioredoxin (trx-4) [Archaeoglobus; E=2e-07 pir:G82991; thioredoxin PA5240 [imported] - Pseudomonas aeruginosa; E=5e-07 pir:S46921; thioredoxin homolog - Mycoplasma capricolum (SGC3); E=2e-06 COG: AF2144; COG0526 Thiol-disulfide isomerase and thioredoxins; E=2e-08 PA4061; COG3118 Thioredoxin domain-containing protein; E=3e-04 BS_ydbP; COG0526 Thiol-disulfide isomerase and thioredoxins; E=3e-04 PFAM: PF00085; Thioredoxin; E=0.062 NP_865181.1 best DB hits: PFAM: PF02517; CAAX amino terminal protease fa; E=0.0017 NP_865183.1 PMID: 9634230 best DB hits: BLAST: swissprot:P71584; PKNB_MYCTU SERINETHREONINE-PROTEIN; E=8e-27 swissprot:P54744; PKNB_MYCLE SERINETHREONINE-PROTEIN; E=2e-26 swissprot:P71585; PKNA_MYCTU SERINETHREONINE-PROTEIN; E=2e-25 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=7e-28 PFAM: PF00069; Protein kinase domain; E=6.2e-62 NP_865185.1 PMID: 10567266 best DB hits: BLAST: pir:C75477; probable fimbrial assembly protein PilM - Deinococcus; E=1e-19 gb:AAK00347.1; AF329876_3 (AF329876) membrane protein; E=1e-06 pir:S75816; membrane protein pilM - Synechocystis sp. (strain PCC; E=8e-06 COG: DR0770; COG0849 Predicted ATPases of the HSP70 class involved in; E=1e-20 NP_865189.1 PMID: 12004073 NP_865190.1 PMID: 9278513 best DB hits: BLAST: gb:AAB89763.1; (AE001000) signal-transducing histidine kinase; E=3e-31 swissprot:Q9LCC2; PHYA_ANASP CYANOBACTERIAL PHYTOCHROME A -----; E=3e-28 swissprot:Q55168; PHY1_SYNY3 PHYTOCHROME-LIKE PROTEIN CPH1; E=1e-26 COG: slr0473_3; COG0642 Sensory transduction histidine kinases; E=1e-27 PFAM: PF00785; PAC motif; E=9.9e-06 PF00989; PAS domain; E=1.1e-07 PF00785; PAC motif; E=0.058 NP_865194.1 PMID: 8843436 best DB hits: BLAST: embl:CAB75999.1; (AL157916) hypothetical protein [Streptomyces; E=4e-10 pir:G70571; hypothetical protein Rv2616 - Mycobacterium tuberculosis; E=1e-09 pir:D75322; conserved hypothetical protein - Deinococcus radiodurans; E=1e-08 NP_865195.1 PMID: 7934835 best DB hits: BLAST: pir:T29905; hypothetical protein F59A3.4 - Caenorhabditis elegans; E=6e-52 pir:A75447; gufA protein - Deinococcus radiodurans (strain R1); E=1e-51 pir:A69162; gufA protein homolog MTH473 - Methanobacterium; E=1e-51 COG: DR1032; COG0428 Predicted divalent heavy-metal cations transporter; E=1e-52 NP_865197.1 PMID: 9427545 best DB hits: BLAST: embl:CAA66078.1; (X97448) galE [Brucella melitensis]; E=2e-07 gb:AAC46054.1; (U78089) UDP-glucose epimerase [Brucella abortus]; E=4e-07 pir:A70392; UDP-glucose-4-epimerase - Aquifex aeolicus ----- gb:; E=5e-06 COG: aq_1069; COG1087 UDP-glucose 4-epimerase; E=5e-07 aq_1335; COG0451 Nucleoside-diphosphate-sugar epimerases; E=2e-05 BS_galE; COG1087 UDP-glucose 4-epimerase; E=3e-05 PFAM: PF00106; short chain dehydrogenase; E=7.4e-05 PF01370; NAD dependent epimerase/dehydratase; E=0.0054 NP_865198.1 PMID: 10192388 best DB hits: BLAST: pir:B72102; conserved hypothetical protein CP0535 [imported] -; E=8e-04 pir:A71548; hypothetical protein CT178 - Chlamydia trachomatis; E=0.68 PFAM: PF00901; Orbivirus outer capsid protein VP5; E=0.16 NP_865200.1 PMID: 10852478 best DB hits: BLAST: embl:CAB67160.1; (AJ271079) ATP synthase alpha subunit [Oenothera; E=0.72 NP_865202.1 best DB hits: PFAM: PF02472; Biopolymer transport protein ExbD/To; E=0.005 NP_865203.1 PMID: 2670903 best DB hits: BLAST: pir:S74451; hypothetical protein sll1405 - Synechocystis sp. (strain; E=1e-08 swissprot:P18784; EXBD_ECOLI BIOPOLYMER TRANSPORT EXBD PROTEIN; E=4e-07 gb:AAC78852.1; (AF087669) ExbD [Bordetella bronchiseptica]; E=4e-06 COG: sll1405; COG0848 Biopolymer transport protein; E=1e-09 PFAM: PF02472; Biopolymer transport protein ExbD/To; E=1.1e-11 NP_865204.1 PMID: 10086841 best DB hits: BLAST: ddbj:BAB05775.1; (AP001514) BH2056~unknown conserved protein in; E=3e-20 pir:T45542; hypothetical protein [imported] - Klebsiella pneumoniae; E=8e-13 gb:AAG10237.1; AF201699_2 (AF201699) phospholipid; E=8e-08 COG: BH2056; COG0030 Dimethyladenosine transferase (rRNA methylation); E=2e-21 APE1011; COG2518 Protein-L-isoaspartate carboxylmethyltransferase; E=0.008 NP_865206.1 best DB hits: PFAM: PF00432; Prenyltransferase and squalene ox; E=0.6 NP_865207.1 PMID: 10484179 best DB hits: BLAST: ddbj:BAB03764.1; (AP001507) signal peptidase-like protein; E=5e-36 swissprot:P37541; YAAT_BACSU HYPOTHETICAL 31.2 KD PROTEIN IN; E=5e-36 gb:AAK04498.1; AE006276_13 (AE006276) HYPOTHETICAL PROTEIN; E=3e-28 COG: BH0045; COG1774 Uncharacterized ACR, PSP1 homologs; E=5e-37 NP_865209.1 PMID: 11029001 best DB hits: BLAST: embl:CAC11769.1; (AL445064) conserved hypothetical protein; E=5e-08 pir:F70426; conserved hypothetical protein aq_1457 - Aquifex; E=5e-06 pir:H70323; hypothetical protein aq_262 - Aquifex aeolicus -----; E=5e-05 COG: Ta0630; COG0500 SAM-dependent methyltransferases; E=5e-09 PFAM: PF02874; ATP synthase alpha/beta family; E=0.21 PF01135; Protein-L-isoaspartate(D-aspar; E=0.52 NP_865211.1 PMID: 8843436 best DB hits: BLAST: embl:CAB55658.1; (AL117385) lipoprotein [Streptomyces; E=0.033 NP_865220.1 PMID: 8892832 best DB hits: BLAST: gb:AAC44553.1; (U34346) unknown [Paracoccus denitrificans]; E=6e-33 embl:CAB61920.1; (AL133278) acetyltransferase; E=3e-28 swissprot:Q09927; YAL4_SCHPO HYPOTHETICAL 23.8 KD PROTEIN; E=6e-16 COG: BH2104; COG0456 Acetyltransferases; E=0.007 PFAM: PF00583; Acetyltransferase (GNAT) family; E=2.2e-16 NP_865223.1 PMID: 10984043 best DB hits: BLAST: ddbj:BAB04418.1; (AP001509) ribosomal-protein-alanine; E=5e-15 ddbj:BAB05587.1; (AP001513) BH1868~unknown conserved protein; E=2e-14 pir:E83153; conserved hypothetical protein PA3945 [imported] -; E=2e-14 COG: BH0699; COG1670 Acetyltransferases, including N-acetylases of; E=5e-16 PFAM: PF00583; Acetyltransferase (GNAT) family; E=1.1e-14 NP_865225.1 PMID: 2144277 PMID: 10784042 PMID: 11481430 best DB hits: BLAST: swissprot:O67611; ACP_AQUAE ACYL CARRIER PROTEIN (ACP) -----; E=0.018 swissprot:P19372; ACP_RHIME ACYL CARRIER PROTEIN (ACP) -----; E=0.055 swissprot:Q9RG22; ACP_RHILE ACYL CARRIER PROTEIN (ACP) -----; E=0.064 COG: aq_1717a; COG0236 Acyl carrier protein; E=0.002 PFAM: PF00550; Phosphopantetheine attachment site; E=0.3 NP_865226.1 PMID: 8134129 best DB hits: BLAST: swissprot:P53356; HT16_HYDAT tyrosine-protein kinase -----; E=0.007 gb:AAF37305.1; AC005931_3 (AC005931) 6-PhosphoFructo-2-Kinase; E=0.008 gb:AAF58766.1; (AE003828) CG16728 gene product [Drosophila; E=0.009 PFAM: PF00023; Ank repeat; E=2.4e-08 NP_865227.1 PMID: 8843436 best DB hits: BLAST: embl:CAB66271.1; (AL136519) integral-membrane protein.; E=1e-06 embl:CAB72202.1; (AL138851) integral-membrane protein; E=5e-06 NP_865243.1 PMID: 9389475 best DB hits: PFAM: PF01011; PQQ enzyme repeat; E=0.12 NP_865246.1 PMID: 8444796 best DB hits: BLAST: pir:E82299; cell division protein FtsH VC0637 [imported] - Vibrio; E=1e-133 swissprot:P28691; FTSH_ECOLI CELL DIVISION PROTEIN FTSH -----; E=1e-129 gb:AAA97508.1; (U01376) ATP-binding protein [Escherichia coli]; E=1e-129 COG: VC0637; COG0465 ATP-dependent Zn proteases; E=1e-134 PFAM: PF00158; Sigma-54 interaction domain; E=0.062 PF00910; RNA helicase; E=0.21 PF01695; IstB-like ATP binding protein; E=0.83 NP_865247.1 PMID: 7542800 best DB hits: BLAST: swissprot:P45339; YJEQ_HAEIN HYPOTHETICAL PROTEIN HI1714 -----; E=2e-35 gb:AAG59360.1; AE005649_5 (AE005649) orf, hypothetical protein; E=5e-34 pir:S56389; hypothetical 37.7K protein (psd-amiB intergenic region); E=8e-34 COG: HI1714; COG1162 Predicted GTPases; E=1e-36 PFAM: PF00005; ABC transporter; E=0.027 PF02421; Ferrous iron transport protein B; E=0.12 NP_865248.1 PMID: 8340421 best DB hits: BLAST: ddbj:BAA34057.1; (AB019196) phosphatidylethanolamine; E=3e-21 swissprot:Q05197; PMTA_RHOSH PHOSPHATIDYLETHANOLAMINE; E=1e-20 pir:E72392; ubiquinonemenaquinone biosynthesis-related protein -; E=7e-08 COG: TM0318; COG0500 SAM-dependent methyltransferases; E=7e-09 PA5063; COG2226 Methylase involved in ubiquinone/menaquinone; E=1e-05 PA3171; COG2227; E=1e-04 PFAM: PF01209; ubiE/COQ5 methyltransferase f; E=4.9e-06 NP_865249.1 PMID: 10360571 best DB hits: BLAST: embl:CAB61271.1; (AL132991) hypothetical protein SCF55.01c; E=1e-04 pir:F72378; conserved hypothetical protein - Thermotoga maritima; E=0.002 swissprot:O50580; DT3E_PSECI D-TAGATOSE 3-EPIMERASE -----; E=0.10 COG: TM0422; COG1082 Predicted endonucleases; E=2e-04 NP_865251.1 PMID: 11065377 PMID: 8412694 best DB hits: BLAST: gb:AAF17352.1; AF155830_1 (AF155830) ; E=1e-62 swissprot:Q9RAE4; GLND_RHILV [PROTEIN-PII] URIDYLYLTRANSFERASE; E=1e-62 swissprot:Q9KPV0; GLND_VIBCH [PROTEIN-PII] URIDYLYLTRANSFERASE; E=1e-61 COG: VC2262; COG2844 UTP:GlnB (protein PII) uridylyltransferase; E=9e-63 PFAM: PF01966; HD domain; E=0.48 PF01842; ACT domain; E=0.0017 NP_865252.1 PMID: 2907369 PMID: 2885322 PMID: 2907369 PMID: 8226691 best DB hits: BLAST: pir:D82102; nitrogen regulatory protein P-II VC2239 [imported] -; E=9e-35 pir:H81961; nitrogen regulatory protein P-II 1 NMA0447 [imported] -; E=3e-34 pir:B81019; nitrogen regulatory protein P-II NMB1995 [imported] -; E=3e-34 COG: VC2239; COG0347 Nitrogen regulatory protein PII; E=9e-36 PFAM: PF00543; Nitrogen regulatory protein P-II; E=7.7e-53 NP_865253.1 PMID: 10484179 best DB hits: BLAST: gb:AAG19830.1; (AE005068) Vng1547c [Halobacterium sp. NRC-1]; E=2e-29 ddbj:BAB05314.1; (AP001512) BH1595~unknown conserved protein; E=3e-29 pir:G83096; conserved hypothetical protein PA4399 [imported] -; E=8e-29 COG: VNG1547C; COG2096 Uncharacterized ACR; E=2e-30 PFAM: PF01923; Protein of unknown function DUF80; E=6.9e-58 NP_865254.1 PMID: 8843436 best DB hits: BLAST: embl:CAC16440.1; (AL450165) MutT-family protein; E=2e-05 swissprot:P56380; AP4A_MOUSE BIS(5'-NUCLEOSYL)-TETRAPHOSPHATASE; E=5e-05 pir:F75532; MutTnudix family protein - Deinococcus radiodurans; E=3e-04 COG: DR0329; COG0494 NTP pyrophosphohydrolases including oxidative damage; E=3e-05 DR0004; COG0494 NTP pyrophosphohydrolases including oxidative; E=4e-05 DR0550; COG0494 NTP pyrophosphohydrolases including oxidative damage; E=1e-04 PFAM: PF00293; MutT-like domain; E=4.8e-17 NP_865255.1 best DB hits: PFAM: PF01322; Cytochrome C'; E=0.0044 NP_865257.1 PMID: 9389475 best DB hits: BLAST: gb:AAB89832.1; (AE001006) chloride channel, ; E=3e-82 embl:CAC12582.1; (AL445067) chloride channel (CLC-3) related; E=2e-49 pir:B70617; hypothetical protein Rv0143c - Mycobacterium; E=1e-33 COG: AF1415_1; COG0038 Chloride channel protein EriC; E=7e-68 aq_438_2; COG0517 CBS domains; E=6e-09 sll0855; COG0038 Chloride channel protein EriC; E=1e-08 PFAM: PF00654; Voltage gated chloride channe; E=1.8e-62 PF00571; CBS domain; E=1.7e-06 NP_865258.1 PMID: 9809430 PMID: 2471187 PMID: 2551682 best DB hits: BLAST: swissprot:Q9X725; OXYR_ERWCH HYDROGEN PEROXIDE-INDUCIBLE GENES; E=8e-33 swissprot:P71318; OXYR_ERWCA HYDROGEN PEROXIDE-INDUCIBLE GENES; E=2e-32 gb:AAA24257.1; (J04553) oxyR protein [Escherichia coli]; E=1e-30 COG: oxyR; COG0583 Transcriptional regulator; E=3e-31 PFAM: PF00126; Bacterial regulatory helix-turn-heli; E=1.6e-47 NP_865259.1 PMID: 8905231 best DB hits: BLAST: pir:S75877; hypothetical protein slr1166 - Synechocystis sp. (strain; E=1e-18 swissprot:Q48453; YC07_KLEPN HYPOTHETICAL 41.2 KD PROTEIN IN CPS; E=5e-09 pir:T46662; alpha 1,2 N-acetylglucosamine transferase [imported] -; E=7e-08 COG: slr1166; COG0438 Predicted glycosyltransferases; E=1e-19 PFAM: PF00534; Glycosyl transferases group 1; E=7.8e-18 NP_865260.1 PMID: 9692189 best DB hits: BLAST: pir:JE0181; oligo-1,6-glucosidase (EC 3.2.1.10) - Bacillus; E=1e-143 ddbj:BAB18518.1; (AB003697) oligo-1,6-glucosidase [Bacillus; E=1e-143 gb:AAD50603.1; AF096282_1 (AF096282) alpha-glucosidase [Thermus; E=1e-141 COG: DR1375; COG0366 Glycosidases; E=1e-140 PFAM: PF00128; Alpha amylase, catalytic domain; E=1.8e-99 NP_865261.1 PMID: 10360571 best DB hits: BLAST: pir:E72203; conserved hypothetical protein - Thermotoga maritima; E=7e-25 pir:B72278; conserved hypothetical protein - Thermotoga maritima; E=4e-17 gb:AAG45396.1; AF307053_11 (AF307053) unknown [Thermococcus; E=6e-10 COG: TM1852; COG2152 Uncharacterized ACR; E=7e-26 NP_865262.1 PMID: 9537320 best DB hits: BLAST: pir:B70393; hypothetical protein aq_1080 - Aquifex aeolicus -----; E=2e-11 pir:E83367; hypothetical protein PA2236 [imported] - Pseudomonas; E=8e-09 pir:S77553; probable hexosyltransferase (EC 2.4.1.-) sll1971; E=4e-07 COG: aq_1080; COG0438 Predicted glycosyltransferases; E=2e-12 PFAM: PF00534; Glycosyl transferases group 1; E=1.3e-15 NP_865263.1 PMID: 10360571 best DB hits: BLAST: pir:E72203; conserved hypothetical protein - Thermotoga maritima; E=2e-36 pir:B72278; conserved hypothetical protein - Thermotoga maritima; E=9e-34 gb:AAG45396.1; AF307053_11 (AF307053) unknown [Thermococcus; E=5e-18 COG: TM1852; COG2152 Uncharacterized ACR; E=2e-37 NP_865264.1 PMID: 7686067 PMID: 2497294 best DB hits: BLAST: ddbj:BAB06792.1; (AP001517) PTS system, enzyme I [Bacillus; E=6e-71 swissprot:P08838; PT1_BACSU PHOSPHOENOLPYRUVATE-PROTEIN; E=2e-68 swissprot:O69251; PT1_BACME PHOSPHOENOLPYRUVATE-PROTEIN; E=5e-67 COG: BH3073; COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI; E=5e-72 PFAM: PF00391; PEP-utilizing enzyme, mobile; E=2.7e-21 PF02896; PEP-utilizing enzyme, TIM bar; E=1.5e-63 NP_865268.1 PMID: 7894707 best DB hits: BLAST: pir:T35404; probable squalene-hopene cyclase - Streptomyces; E=4e-04 swissprot:P33990; SQHC_ZYMMO SQUALENE--HOPENE CYCLASE -----; E=0.002 pir:T45142; squalene-hopene cyclase [imported] - Methylococcus; E=0.003 COG: slr2089; COG1657 Squalene cyclase; E=0.002 NP_865269.1 best DB hits: PFAM: PF02012; BNR repeat; E=0.05 NP_865270.1 PMID: 9371463 best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=0.005 gb:AAG31643.1; AF309488_1 (AF309488) methanol dehydrogenase large; E=0.009 pir:F72237; conserved hypothetical protein - Thermotoga maritima; E=0.29 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=5e-04 PFAM: PF01011; PQQ enzyme repeat; E=0.00081 NP_865272.1 PMID: 1400240 PMID: 8591030 best DB hits: BLAST: pir:A49227; sialidase - Actinomyces viscosus ----- gb:; E=1e-06 pir:S20590; exo-alpha-sialidase (EC 3.2.1.18) - Actinomyces viscosus; E=2e-06 swissprot:Q02834; NANH_MICVI SIALIDASE PRECURSOR (NEURAMINIDASE); E=3e-05 PFAM: PF02012; BNR repeat; E=0.098 NP_865274.1 PMID: 2670897 best DB hits: BLAST: swissprot:P14412; CATA_BACST PEROXIDASECATALASE; E=0.0 ddbj:BAA36976.1; (AB020064) catalase [Bacillus; E=0.0 ddbj:BAA36977.1; (AB020065) catalase [Bacillus; E=0.0 COG: BH0906; COG0376 Catalase (peroxidase I); E=0.0 PFAM: PF00141; Peroxidase; E=2.4e-87 NP_865277.1 PMID: 9371463 best DB hits: BLAST: pir:H69068; cell surface glycoprotein (s-layer protein) related; E=2e-25 pir:A72266; hypothetical protein - Thermotoga maritima (strain MSB8); E=5e-04 NP_865278.1 PMID: 11248100 best DB hits: BLAST: gb:AAK03752.1; (AE006203) unknown [Pasteurella multocida]; E=6e-19 pir:B64825; hypothetical protein b0866 - Escherichia coli -----; E=3e-18 ddbj:BAB04830.1; (AP001510) BH1111~unknown conserved protein; E=4e-18 COG: ybjQ; COG0393 Uncharacterized ACR; E=3e-19 PFAM: PF01906; Domain of unknown function DUF74; E=2.7e-35 NP_865280.1 PMID: 11689431 best DB hits: BLAST: ddbj:BAA09768.1; (D63481) The KIAA0147 gene product is related to; E=0.009 gb:AAK02818.1; (AE006110) HtrA [Pasteurella multocida]; E=0.038 swissprot:P37764; YAEL_ECOLI HYPOTHETICAL 49.1 KDA PROTEIN IN; E=0.056 COG: yaeL; COG0750 Predicted membrane-associated Zn-dependent proteases 1; E=0.005 PFAM: PF00595; PDZ domain (Also known as DHR or GLG; E=0.00026 NP_865283.1 PMID: 11214968 best DB hits: BLAST: pir:S74039; hypothetical protein c0103 - Sulfolobus solfataricus; E=0.060 pir:T50944; hypothetical protein [imported] - Pseudomonas; E=0.62 PFAM: PF00452; Apoptosis regulator proteins, Bcl-2; E=0.19 PF01587; Monocarboxylate transporter; E=0.79 NP_865296.1 PMID: 10768931 best DB hits: BLAST: gb:AAK00475.1; (AF200692) unknown [Shigella flexneri 2a]; E=5e-34 pir:H64964; probable membrane protein b2001 - Escherichia coli; E=1e-18 swissprot:P76361; YEER_ECOLI HYPOTHETICAL 57.2 KDA PROTEIN IN; E=1e-18 NP_865306.1 PMID: 9384377 best DB hits: BLAST: pir:G69742; hypothetical protein ybaJ - Bacillus subtilis -----; E=7e-69 pir:E83313; conserved hypothetical protein PA2650 [imported] -; E=2e-60 pir:T35744; hypothetical protein SC7H2.13 - Streptomyces coelicolor; E=9e-05 COG: BS_ybaJ; COG0500 SAM-dependent methyltransferases; E=6e-70 NP_865307.1 PMID: 6087149 best DB hits: BLAST: embl:CAA24848.1; (V01555) BSLF1 reading frame, homologous to RF 6; E=0.091 NP_865310.1 PMID: 10484179 best DB hits: BLAST: ddbj:BAB05884.1; (AP001514) BH2165~unknown conserved protein; E=1e-09 embl:CAC24034.1; (AL512980) ORF-c34_017 [Sulfolobus solfataricus]; E=4e-09 ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=1e-08 COG: BH2165; COG0673 Predicted dehydrogenases and related proteins; E=1e-10 PFAM: PF01408; Oxidoreductase, NAD-bindi; E=1.3e-20 NP_865313.1 PMID: 10567266 best DB hits: BLAST: gb:AAF12630.1; AE001826_99 (AE001826) hypothetical protein; E=0.33 PFAM: PF00404; Dockerin type I repeat; E=0.54 NP_865317.1 PMID: 3316192 PMID: 3316192 best DB hits: BLAST: swissprot:O83675; DP3A_TREPA DNA POLYMERASE III, ALPHA CHAIN -----; E=0.0 gb:AAD44403.1; (AF062920) DNA polymerase III [Thermus aquaticus]; E=0.0 swissprot:O67125; DP3A_AQUAE DNA POLYMERASE III, ALPHA CHAIN -----; E=0.0 COG: TP0669; COG0587 DNA polymerase III alpha subunit; E=0.0 PFAM: PF02231; PHP domain N-terminal region; E=5.8e-32 PF02811; PHP domain C-terminal region; E=2e-36 PF01336; OB-fold nucleic acid binding domain; E=1.4e-08 NP_865319.1 PMID: 7781769 PMID: 1657179 PMID: 8021187 best DB hits: BLAST: pir:B75584; cytochrome-c peroxidase (EC 1.11.1.5) DRA0301; E=1e-36 swissprot:Q50426; MAUG_METFL METHYLAMINE UTILIZATION PROTEIN MAUG; E=9e-36 swissprot:Q49128; MAUG_METEX METHYLAMINE UTILIZATION PROTEIN MAUG; E=2e-31 COG: DRA0301; COG1858 Cytochrome c peroxidase; E=1e-37 NP_865326.1 PMID: 98242082 best DB hits: BLAST: gb:AAF21820.1; AF098954_1 (AF098954) beta-agarase A precursor; E=1e-08 pir:T18265; endo-1,3(4)-beta-glucanase (EC 3.2.1.6) - Clostridium; E=2e-08 embl:CAC27412.1; (AJ307315) endo-1,3(4)-beta-glucanase; E=2e-08 COG: TM0024; COG2273 Beta-glucanase/Beta-glucan synthetase; E=5e-09 PFAM: PF00722; Glycosyl hydrolases family 16; E=0.15 PF02018; Cellulose binding domain; E=3.1e-05 NP_865335.1 PMID: 9278503 best DB hits: BLAST: pir:C65016; hypothetical protein b2420 - Escherichia coli (strain; E=7e-04 NP_865337.1 PMID: 7607529 PMID: 9163424 PMID: 8402918 best DB hits: BLAST: swissprot:P55632; Y4QK_RHISN INTEGRASERECOMBINASE Y4QK; E=3e-39 swissprot:P55429; Y4EF_RHISN INTEGRASERECOMBINASE Y4EF; E=1e-32 prf:2115270D; integrase [Weeksella zoohelcum]; E=6e-23 COG: PAB0255; COG0582 Integrase; E=1e-20 PFAM: PF02899; Phage integrase, N-terminal S; E=0.3 PF00589; Phage integrase; E=8e-31 NP_865338.1 PMID: 7607529 PMID: 9163424 best DB hits: BLAST: prf:2115270C; transposase [Weeksella zoohelcum]; E=1e-33 swissprot:P55631; Y4QJ_RHISN TRANSPOSASE Y4QJ -----; E=1e-32 swissprot:P24607; T801_PSESH TRANSPOSASE FOR INSERTION SEQUENCE; E=2e-09 PFAM: PF01096; Transcription factor S-II (TFIIS); E=0.19 NP_865339.1 PMID: 7607529 NP_865342.1 best DB hits: PFAM: PF02413; Domain of unknown function DUF144; E=0.11 NP_865348.1 PMID: 7607529 PMID: 9163424 PMID: 8402918 best DB hits: BLAST: gb:AAA88676.1; (M33633) unknown protein [Transposon Tn21]; E=1e-56 embl:CAA75043.1; (Y14748) int [Corynebacterium glutamicum]; E=4e-56 gb:AAF72980.1; AF255921_1 (AF255921) recombinase [Shigella; E=4e-56 COG: VCA0291; COG0582 Integrase; E=1e-49 PFAM: PF00589; Phage integrase; E=2.9e-32 NP_865352.1 PMID: 2914847 PMID: 1997423 PMID: 3066701 best DB hits: BLAST: swissprot:P21354; OM6L_CHLTR 60 KDA OUTER MEMBRANE PROTEIN,; E=9e-20 gb:AAA23119.1; (M35148) 60-kDa cysteine-rich outer membrane; E=9e-20 swissprot:P23603; OM6E_CHLTR 60 KDA OUTER MEMBRANE PROTEIN,; E=3e-19 PFAM: PF00313; 'Cold-shock' DNA-binding domain; E=0.64 NP_865353.1 PMID: 10984043 best DB hits: BLAST: pir:D83643; hypothetical protein PA0015 [imported] - Pseudomonas; E=0.011 pir:F70422; hypothetical protein aq_1409 - Aquifex aeolicus -----; E=0.065 gb:AAF06042.1; AC009360_7 (AC009360) F16G16.8 [Arabidopsis; E=0.68 COG: PA0015; COG0457 TPR-repeat-containing proteins; E=0.001 NP_865355.1 PMID: 7934829 best DB hits: BLAST: swissprot:O67444; YE64_AQUAE HYPOTHETICAL PROTEIN AQ_1464 -----; E=4e-47 pir:T36871; probable pseudouridine synthase - Streptomyces; E=1e-40 swissprot:O33210; YH11_MYCTU HYPOTHETICAL 27.6 KDA PROTEIN RV1711; E=9e-38 COG: aq_1464; COG1187 16S rRNA uridine-516 pseudouridylate synthase and; E=3e-48 PFAM: PF01479; S4 domain; E=3.1e-11 PF00849; RNA pseudouridylate synthase; E=6.5e-13 NP_865356.1 PMID: 8763940 PMID: 9387221 best DB hits: BLAST: swissprot:P22806; BIOF_BACSH 8-AMINO-7-OXONONANOATE SYNTHASE; E=1e-57 swissprot:P53556; BIOF_BACSU 8-AMINO-7-OXONONANOATE SYNTHASE; E=7e-57 ddbj:BAB07626.1; (AP001520) 8-amino-7-oxononanoate synthase; E=2e-51 COG: BS_bioF; COG0156 7-keto-8-aminopelargonate synthetase and related; E=6e-58 PFAM: PF01053; Cys/Met metabolism PLP-depend; E=0.00067 PF00222; Aminotransferase class-II; E=1.6e-74 NP_865357.1 PMID: 9634230 best DB hits: BLAST: pir:F70837; probable sulfatase (EC 3.1.6.-) atsG - Mycobacterium; E=4e-25 prf:2204388A; sulphamidase [Homo sapiens]; E=1e-17 gb:AAF55607.1; (AE003724) CG14291 gene product [Drosophila; E=7e-17 COG: Rv0296c; COG3119 Arylsulfatase A and related enzymes; E=4e-26 PA0924; COG3083 Predicted hydrolase of alkaline phosphatase; E=0.002 PFAM: PF00884; Sulfatase; E=1.3e-07 NP_865358.1 PMID: 10688204 best DB hits: BLAST: pir:B81282; probable integral membrane protein Cj1373 [imported] -; E=3e-08 pir:H71453; hypothetical protein PH0287 - Pyrococcus horikoshii; E=1e-06 pir:A75018; transport protein PAB1101 - Pyrococcus abyssi (strain; E=2e-05 COG: Cj1373; COG1033 Membrane proteins related to SecD/SecF; E=3e-09 NP_865359.1 PMID: 10688204 best DB hits: BLAST: pir:E71280; probable antibiotic transport protein - syphilis; E=2e-05 pir:B81282; probable integral membrane protein Cj1373 [imported] -; E=3e-04 pir:D70131; conserved hypothetical integral membrane protein BB0252 -; E=0.003 COG: TP0790; COG1033 Membrane proteins related to SecD/SecF; E=2e-06 PFAM: PF01218; Coproporphyrinogen III oxidas; E=0.021 NP_865363.1 PMID: 8616240 best DB hits: BLAST: pir:T36008; probable transaldolase - Streptomyces coelicolor -----; E=7e-21 swissprot:O06812; TAL_MYCTU TRANSALDOLASE ----- pir: C70917; E=3e-17 pir:T48589; transaldolase-like protein - Arabidopsis thaliana; E=3e-17 COG: Rv1448c; COG0176 Transaldolase; E=3e-18 PFAM: PF00923; Transaldolase; E=0.78 NP_865365.1 PMID: 8034700 PMID: 8058761 best DB hits: BLAST: pir:F70144; carboxyl-terminal processing proteinase (ctp) homolog -; E=1e-42 pir:A71677; tail-specific proteinase precursor (ctp) RP228 -; E=2e-41 pir:B83005; probable carboxyl-terminal proteinase PA5134 [imported]; E=8e-40 COG: BB0359; COG0793 Periplasmic protease; E=1e-43 PFAM: PF00515; TPR Domain; E=0.18 PF00595; PDZ domain (Also known as DHR or GLG; E=4.7e-05 NP_865377.1 PMID: 11823852 NP_865378.1 PMID: 11073910 best DB hits: BLAST: swissprot:Q57763; Y315_METJA HYPOTHETICAL PROTEIN MJ0315 -----; E=1e-08 pir:B75030; hypothetical protein PAB1162 - Pyrococcus abyssi (strain; E=4e-07 pir:H71215; hypothetical protein PH1992 - Pyrococcus horikoshii; E=3e-06 COG: MJ0315; COG1586 S-adenosylmethionine decarboxylase; E=1e-09 PFAM: PF02576; Uncharacterized BCR, YhbC family COG; E=0.88 PF02675; S-adenosylmethionine decarboxylase; E=1.7e-10 NP_865379.1 best DB hits: BLAST: pir:E69789; hypothetical protein ydjI - Bacillus subtilis -----; E=3e-25 gb:AAK05447.1; AE006367_3 (AE006367) UNKNOWN PROTEIN [Lactococcus; E=6e-06 ddbj:BAB05524.1; (AP001513) BH1805~unknown conserved protein in; E=7e-05 NP_865385.1 PMID: 1482681 best DB hits: BLAST: embl:CAB59581.1; (AL132662) possible gluconolactonase precursor; E=2e-26 pir:A75539; probable gluconolactonase - Deinococcus radiodurans; E=8e-20 pir:B82698; gluconolactonase precursor XF1297 [imported] - Xylella; E=8e-16 COG: DR0277; COG3386 Uncharacterized protein; E=8e-21 NP_865386.1 PMID: 9923682 PMID: 7890707 best DB hits: BLAST: pir:E71961; probable transporter - Helicobacter pylori (strain J99); E=2e-51 pir:F64546; sodium-dependent transporter - Helicobacter pylori; E=8e-51 ddbj:BAA96091.1; (AB043024) sodium sulfate or dicarboxylate; E=1e-45 COG: jhp0200; COG0471 Di- and tricarboxylate transporters; E=2e-52 PAB1107; COG1055 Na+/H+ antiporter NhaD and related arsenite; E=0.001 sll0640; COG0471 Di- and tricarboxylate transporters; E=0.006 PFAM: PF00939; Sodium:sulfate symporter transm; E=1.6e-12 NP_865387.1 best DB hits: BLAST: pir:S34725; regulation protein - Serratia marcescens ----- embl:; E=3e-14 swissprot:P11555; FUCU_ECOLI FUCOSE OPERON FUCU PROTEIN -----; E=0.017 pir:H82496; ribose ABC transporter protein VCA0127 [imported] -; E=0.37 COG: fucU; COG1869 Uncharacterized components of ribose/xylose transport; E=0.002 NP_865388.1 best DB hits: BLAST: swissprot:Q9WYP7; Y416_THEMA HYPOTHETICAL PROTEIN TM0416 -----; E=4e-13 swissprot:O50580; DT3E_PSECI D-TAGATOSE 3-EPIMERASE -----; E=8e-11 swissprot:P73599; YD04_SYNY3 HYPOTHETICAL 32.8 KDA PROTEIN SLL1304; E=4e-10 COG: TM0416; COG1082 Predicted endonucleases; E=4e-14 NP_865389.1 PMID: 7540828 PMID: 8878048 best DB hits: BLAST: gb:AAK03433.1; (AE006173) SlyD [Pasteurella multocida]; E=9e-21 gb:AAC45696.1; (U92229) macrophage infectivity potentiator; E=5e-19 swissprot:P44760; FKBY_HAEIN PROBABLE FKBP-TYPE PEPTIDYL-PROLYL; E=1e-18 COG: HI0574; COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1; E=9e-20 PFAM: PF00254; FKBP-type peptidyl-prolyl cis-trans; E=8.4e-32 NP_865390.1 PMID: 12024217 NP_865392.1 PMID: 11298281 best DB hits: BLAST: gb:AAF81068.1; AF223364_3 (AF223364) protein phosphatase 1; E=3e-27 pir:E71538; hypothetical protein CT259 - Chlamydia trachomatis; E=5e-26 embl:CAA10712.1; (AJ132604) pppL protein [Lactococcus lactis]; E=2e-25 COG: CT259; COG0631 Protein serine/threonine phosphatases; E=4e-27 PFAM: PF00481; Protein phosphatase 2C; E=1.2e-09 NP_865394.1 best DB hits: BLAST: pir:G83038; probable sensorresponse regulator hybrid PA4856; E=0.74 NP_865395.1 PMID: 8905231 best DB hits: BLAST: pir:S76102; hypothetical protein slr0359 - Synechocystis sp. (strain; E=3e-99 pir:S76238; hypothetical protein sll0267 - Synechocystis sp. (strain; E=2e-89 pir:S77565; hypothetical protein slr2077 - Synechocystis sp. (strain; E=5e-88 COG: PA0575_4; COG2200 Diguanylate cyclase/phosphodiesterase domain 2; E=1e-59 PFAM: PF00900; Ribosomal family S4e; E=0.72 PF00072; Response regulator receiver dom; E=3.8e-29 PF00785; PAC motif; E=0.054 NP_865397.1 best DB hits: BLAST: ddbj:BAA75396.1; (AB013378) YhaQ [Bacillus halodurans]; E=1e-38 pir:T36523; probable ABC-type transport system ATP-binding protein -; E=2e-38 ddbj:BAB04722.1; (AP001510) ABC transporter (ATP-binding protein); E=4e-38 COG: BH1003; COG1131 ABC-type multidrug transport system, ATPase; E=3e-39 PFAM: PF01495; HypB/UreG nucleotide-binding; E=0.28 PF02223; Thymidylate kinase; E=0.38 PF00005; ABC transporter; E=2.4e-41 NP_865398.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate NP_865399.1 PMID: 12004073 NP_865400.1 PMID: 11932238 NP_865405.1 PMID: 10952301 best DB hits: BLAST: pir:F82405; glyoxylase I family protein VCA0890 [imported] - Vibrio; E=0.41 PFAM: PF00903; Glyoxalase/Bleomycin resistance pr; E=0.0022 NP_865406.1 PMID: 1537789 PMID: 8472911 PMID: 8994968 best DB hits: BLAST: embl:CAB02496.1; (Z80356) glucose-fructose oxidoreductase; E=5e-07 pdb:1OFG; A Chain A, Glucose-Fructose Oxidoreductase -----; E=5e-07 pdb:1EVJ; A Chain A, Crystal Structure Of Glucose-Fructose; E=5e-07 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=1e-06 PFAM: PF01408; Oxidoreductase, NAD-bindi; E=5.1e-14 PF00431; CUB domain; E=0.64 NP_865407.1 best DB hits: BLAST: swissprot:Q45480; YLYB_BACSU HYPOTHETICAL 33.7 KD PROTEIN IN; E=4e-31 swissprot:P50513; RLUD_ZYMMO RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE; E=2e-30 ddbj:BAB06261.1; (AP001515) BH2542~unknown conserved protein; E=3e-30 COG: BH2542; COG0564 Pseudouridylate synthases, 23S RNA-specific; E=3e-31 PFAM: PF01479; S4 domain; E=5.2e-10 PF00849; RNA pseudouridylate synthase; E=6.4e-30 NP_865410.1 PMID: 8969512 best DB hits: BLAST: gb:AAF73695.1; (AE002226) serinethreonine-protein kinase; E=6e-30 pir:G71532; probable threoninetyrosine-specific protein kinase (EC; E=3e-29 gb:AAF73573.1; (AE002326) serinethreonine protein kinase; E=1e-28 COG: CT301_1; COG0515 Serine/threonine protein kinases; E=3e-30 PFAM: PF00069; Protein kinase domain; E=0.0026 NP_865411.1 PMID: 8863738 best DB hits: BLAST: gb:AAF89615.1; AF167433_1 (AF167433) gyrase B [Thermus; E=5e-18 pir:JC4960; DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) B -; E=1e-16 swissprot:P77993; GYRB_THEMA DNA GYRASE SUBUNIT B (TOPOISOMERASE; E=1e-16 COG: TM0833; COG0187 DNA gyrase (topoisomerase II) B subunit; E=1e-17 PFAM: PF01751; Toprim domain; E=0.81 NP_865412.1 PMID: 9278503 best DB hits: BLAST: pir:E65030; hypothetical protein b2534 - Escherichia coli (strain; E=3e-07 gb:AAG57647.1; AE005483_6 (AE005483) enzyme (3.4.-); E=3e-07 gb:AAF51169.1; (AE003581) Bem46 gene product [Drosophila; E=2e-06 COG: yfhR; COG1073 Hydrolases of the alpha/beta superfamily; E=3e-08 VC1451; COG2931 RTX toxins and related Ca2+-binding proteins; E=0.001 PA3695; COG1073 Hydrolases of the alpha/beta superfamily; E=0.004 PFAM: PF00561; alpha/beta hydrolase fold; E=0.37 NP_865416.1 PMID: 1644313 PMID: 7765961 PMID: 6300069 PMID: 3566914 PMID: 6540370 PMID: 7500343 best DB hits: BLAST: swissprot:P02346; DBH_BACST DNA-BINDING PROTEIN II (HB) (HU); E=2e-13 prf:1702428A; DNA binding protein HU [Bacillus caldolyticus]; E=1e-12 swissprot:P08821; DBH_BACSU DNA-BINDING PROTEIN II (HB) (HU); E=4e-12 COG: BS_hbs; COG0776 Bacterial nucleoid DNA-binding protein; E=4e-13 PFAM: PF00216; Bacterial DNA-binding protein; E=2.5e-29 NP_865417.1 PMID: 9923682 best DB hits: BLAST: swissprot:Q9ZMG1; Y274_HELPJ HYPOTHETICAL PROTEIN HP0274JHP0259; E=8e-18 swissprot:P56132; Y274_HELPY HYPOTHETICAL PROTEIN HP0274 -----; E=3e-16 pir:C81395; hypothetical protein Cj0496 [imported] - Campylobacter; E=1e-13 COG: jhp0259; COG0727 Predicted Fe-S-cluster oxidoreductase; E=7e-19 NP_865420.1 PMID: 2188958 best DB hits: BLAST: gb:AAF43869.1; AF166114_81 (AF166114) probable transport protein; E=3e-22 gb:AAG19353.1; (AE005030) spermidineputrescine ABC transporter; E=7e-22 pir:B81966; probable ABC transport ATP-binding protein NMA0485; E=7e-22 COG: VNG0921G; COG1130 ABC-type sugar/spermidine/putrescine transport; E=6e-23 NMB1966; COG1127 Uncharacterized ABC-type transport system, ATPase; E=9e-23 slr1455; COG1118 ABC-type sulfate/molybdate transport systems,; E=3e-22 PFAM: PF01078; Magnesium chelatase, subunit Chl; E=0.58 PF00005; ABC transporter; E=2.1e-43 PF02405; Domain of unknown function DUF14; E=7.9e-07 NP_865422.1 PMID: 3058702 best DB hits: BLAST: gb:AAG53588.1; AF248314_3 (AF248314) DAPA aminotransferase BioA; E=2e-95 swissprot:P53656; BIOA_ERWHE; E=3e-92 gb:AAG60578.1; AF250776_2 (AF250776) DAPA-aminotransferase BioA; E=3e-91 COG: bioA; COG0161 Adenosylmethionine-8-amino-7-oxononanoate; E=3e-92 PFAM: PF00202; Aminotransferase class-III; E=3e-129 NP_865426.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_865429.1 PMID: 9371463 best DB hits: BLAST: pir:B69061; hypothetical protein MTH1458 - Methanobacterium; E=9e-51 PFAM: PF00633; Helix-hairpin-helix motif.; E=0.049 NP_865432.1 PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=3e-39 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=3e-33 embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=9e-32 COG: aslA; COG3119 Arylsulfatase A and related enzymes; E=1e-19 VC2041; COG3083 Predicted hydrolase of alkaline phosphatase; E=0.007 PFAM: PF00884; Sulfatase; E=4.4e-58 NP_865433.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate NP_865434.1 PMID: 10952301 best DB hits: BLAST: pir:E82042; conserved hypothetical protein VC2716 [imported] -; E=0.0 swissprot:P57072; YHGF_NEIMA HYPOTHETICAL PROTEIN NMA0194 -----; E=1e-179 swissprot:P71353; YHGF_HAEIN HYPOTHETICAL PROTEIN HI0568 -----; E=1e-177 COG: VC2716; COG2183 Predicted RNA binding protein, contains S1 domain; E=0.0 Rv1630; COG0539 Ribosomal protein S1; E=2e-06 BS_comEA; COG1555 DNA uptake protein and related DNA-binding; E=3e-06 PFAM: PF00633; Helix-hairpin-helix motif.; E=0.51 PF00575; S1 RNA binding domain; E=4.4e-25 NP_865435.1 PMID: 8444796 best DB hits: BLAST: pir:F72009; cell division protein FtsH, probable CP0857 [imported] -; E=2e-04 pir:D71463; probable ATP-dependent zinc proteinase - Chlamydia; E=4e-04 pir:F81725; cell division protein FtsH, probable TC0229 [imported] -; E=5e-04 COG: CPn0998; COG0465 ATP-dependent Zn proteases; E=2e-05 PFAM: PF01434; Peptidase M41; E=0.4 NP_865436.1 PMID: 9584149 best DB hits: BLAST: gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=3e-13 pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=2e-12 embl:CAC24034.1; (AL512980) ORF-c34_017 [Sulfolobus solfataricus]; E=2e-08 COG: TM0585; COG0673 Predicted dehydrogenases and related proteins; E=2e-13 PFAM: PF01408; Oxidoreductase, NAD-bin; E=1.1e-12 NP_865437.1 PMID: 11481432 NP_865438.1 PMID: 10952301 best DB hits: BLAST: pir:F82461; conserved hypothetical protein VCA0415 [imported] -; E=3e-33 gb:AAB81981.1; (AF025662) unknown [Vibrio cholerae]; E=1e-32 pir:A82473; conserved hypothetical protein VCA0338 [imported] -; E=4e-32 COG: VCA0415; COG3324 Uncharacterized BCR; E=3e-34 PFAM: PF00903; Glyoxalase/Bleomycin resistance pr; E=0.00045 NP_865439.1 PMID: 2544196 best DB hits: BLAST: swissprot:P56205; CYC_ASPNG CYTOCHROME C ----- pir: A61490; E=0.005 pir:S41568; cytochrome c - Emericella nidulans; E=0.025 swissprot:P38091; CYC_EMENI CYTOCHROME C ----- gb: AAB50255.1; E=0.025 PFAM: PF00034; Cytochrome c; E=0.0014 NP_865440.1 PMID: 12004073 NP_865445.1 PMID: 10484179 best DB hits: BLAST: ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=1e-06 swissprot:O05389; YRBE_BACSU HYPOTHETICAL 37.8 KDA PROTEIN IN; E=3e-05 swissprot:Q44258; CBAC_ALCSB 1-CARBOXY-3-CHLORO-3,4-DIHYDROXYCYCLO; E=6e-05 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=1e-07 PFAM: PF01408; Oxidoreductase, NAD-bin; E=4.6e-08 NP_865449.1 PMID: 1761221 PMID: 112095 best DB hits: BLAST: ddbj:BAA97119.1; (AB035122); E=9e-09 pir:S76068; hypothetical protein - Synechocystis sp. (strain PCC; E=3e-08 swissprot:P26935; MI2D_BACSU MYO-INOSITOL 2-DEHYDROGENASE -----; E=1e-07 COG: slr0338; COG0673 Predicted dehydrogenases and related proteins; E=3e-09 PFAM: PF01408; Oxidoreductase, NAD-bin; E=6.7e-37 NP_865450.1 PMID: 8747459 best DB hits: BLAST: swissprot:O31458; YBFT_BACSU HYPOTHETICAL 27.3 KD PROTEIN IN; E=2e-44 swissprot:O35000; NAGB_BACSU GLUCOSAMINE-6-PHOSPHATE ISOMERASE; E=6e-43 swissprot:O97440; GNP2_GIALA GLUCOSAMINE-6-PHOSPHATE ISOMERASE 2; E=6e-41 COG: BS_ybfT; COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate; E=2e-45 PFAM: PF01182; Glucosamine-6-phosphate isome; E=3.7e-76 NP_865451.1 best DB hits: BLAST: gb:AAC14880.1; (AF060080) hypothetical protein [Chlorobium; E=8e-12 embl:CAA77139.1; (Y18353) hypothetical protein [Thermus; E=4e-09 pir:C75001; hypothetical protein PAB1341 - Pyrococcus abyssi (strain; E=4e-09 COG: PAB1341; COG2120 Uncharacterized proteins, LmbE homologs; E=4e-10 PFAM: PF02585; Uncharacterized LmbE-like protein, C; E=8.8e-12 NP_865452.1 PMID: 9666063 best DB hits: BLAST: pir:G83352; transcriptional regulator MtlR PA2337 [imported] -; E=3e-30 gb:AAC34292.1; (AF047527) activator protein [Pseudomonas; E=2e-26 pir:G82221; transcriptional regulator AraCXylS family VC1260; E=2e-16 COG: PA2337; COG2207 AraC-type DNA-binding domain-containing proteins; E=3e-31 PFAM: PF00165; Bacterial regulatory helix-turn-heli; E=3.5e-21 NP_865453.1 best DB hits: PFAM: PF02369; Bacterial Ig-like domain (group 1); E=0.48 NP_865454.1 PMID: 1723410 PMID: 1400260 best DB hits: BLAST: pir:S75649; renin-binding protein-related protein - Synechocystis; E=1e-68 pdb:1FP3; A Chain A, Crystal Structure Of N-Acyl-D-Glucosamine; E=4e-54 swissprot:P51607; RNBP_RAT N-ACYLGLUCOSAMINE 2-EPIMERASE (GLCNAC; E=2e-53 COG: slr1975; COG2942 N-acyl-D-glucosamine 2-epimerase; E=1e-69 NP_865455.1 PMID: 8905231 best DB hits: BLAST: pir:S75887; hypothetical protein - Synechocystis sp. (strain PCC; E=4e-40 gb:AAF54633.1; (AE003691) CG6723 gene product [Drosophila; E=5e-32 swissprot:Q9XT77; SL56_RABIT SODIUM-DEPENDENT MULTIVITAMIN; E=6e-32 COG: sll1087; COG0591 Na+/proline, Na+/panthothenate symporters and; E=4e-41 RP571; COG0591 Na+/proline, Na+/panthothenate symporters and related; E=4e-13 BH2222; COG0591 Na+/proline, Na+/panthothenate symporters and; E=3e-12 PFAM: PF01344; Kelch motif; E=0.014 PF00474; Sodium:solute symporter family; E=1.5e-11 NP_865456.1 PMID: 8081752 PMID: 3909108 PMID: 10952301 best DB hits: BLAST: pir:E82157; probable N-acetylneuraminate lyase VC1776 [imported] -; E=2e-39 embl:CAC27797.1; (AJ271330) acylneuraminate lyase [Sus scrofa]; E=7e-36 gb:AAG18989.1; (AE004999) dihydrodipicolinate synthase; DapA; E=2e-18 COG: VC1776; COG0329 Dihydrodipicolinate synthetase/N-acetylneuraminate; E=2e-40 PFAM: PF00701; Dihydrodipicolinate synthetase famil; E=2.7e-23 NP_865457.1 PMID: 1400240 PMID: 8591030 best DB hits: BLAST: swissprot:Q02834; NANH_MICVI SIALIDASE PRECURSOR (NEURAMINIDASE); E=3e-40 pdb:1EUR; Sialidase ----- pdb: 1EUS Sialidase Complexed; E=3e-40 pdb:1EUU; Sialidase Or Neuraminidase, Large 68kd Form -----; E=3e-40 PFAM: PF02012; BNR repeat; E=0.1 NP_865459.1 PMID: 8021188 best DB hits: BLAST: swissprot:Q50233; MAUG_METME METHYLAMINE UTILIZATION PROTEIN MAUG; E=2e-05 pir:B82367; cytochrome-c peroxidase (EC 1.11.1.5) VC0089; E=4e-05 swissprot:Q50426; MAUG_METFL METHYLAMINE UTILIZATION PROTEIN MAUG; E=1e-04 COG: VC0089; COG1858 Cytochrome c peroxidase; E=4e-06 NP_865464.1 PMID: 2000090 PMID: 8552028 best DB hits: BLAST: pir:S77202; sensory transduction histidine kinase sll1687 -; E=1e-09 swissprot:Q46791; YGEK_ECOLI HYPOTHETICAL TRANSCRIPTIONAL; E=5e-07 swissprot:P23221; FIXJ_BRAJA transcriptional regulator; E=5e-07 COG: sll1687_1; COG2202 PAS/PAC domain; E=1e-10 ygeK; COG2771 DNA-binding HTH domains; E=4e-08 sll0779_1; COG2202 PAS/PAC domain; E=2e-07 PFAM: PF00989; PAS domain; E=0.032 PF00785; PAC motif; E=4.6e-09 PF00196; Bacterial regulatory proteins, luxR; E=1.4e-19 NP_865467.1 PMID: 9537320 best DB hits: BLAST: pir:H70355; hypothetical protein aq_627 - Aquifex aeolicus -----; E=1e-09 ddbj:BAA09665.1; (D63341) XylN outer membrane protein; E=3e-09 ddbj:BAA12149.1; (D83955) outer membrane protein [Pseudomonas; E=1e-08 COG: aq_627; COG2067 Long-chain fatty acid transport protein; E=1e-10 NP_865470.1 PMID: 9634230 best DB hits: BLAST: swissprot:Q10552; Y893_MYCTU HYPOTHETICAL 36.1 KDA PROTEIN RV0893C; E=3e-10 swissprot:Q50726; YX99_MYCTU HYPOTHETICAL 38.1 KDA PROTEIN RV3399; E=2e-08 pir:A70645; hypothetical protein Rv0726c - Mycobacterium; E=6e-08 COG: Rv0893c; COG3315 O-Methyltransferase involved in polyketide; E=3e-11 PFAM: PF02409; Domain of unknown function DUF142; E=7e-05 NP_865472.1 PMID: 9098081 best DB hits: BLAST: pir:T28655; receptor-like histidine kinase BpdS - Rhodococcus sp; E=1e-60 pir:T30898; receptor-like histidine kinase - Rhodococcus erythropolis; E=1e-60 pir:S75136; sensory transduction histidine kinase slr2104 -; E=9e-58 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=1e-41 PFAM: PF00069; Protein kinase domain; E=8.1e-08 PF00515; TPR Domain; E=0.026 PF00512; His Kinase A (phosphoacceptor); E=1.4e-21 NP_865475.1 PMID: 11474104 NP_865476.1 best DB hits: BLAST: ddbj:BAA91540.1; (AK001182) unnamed protein product [Homo sapiens]; E=8e-05 embl:CAB98267.1; (AJ276171) ASPIC [Homo sapiens]; E=2e-04 embl:CAB98268.1; (AJ276171) ASPIC [Homo sapiens] ----- embl:; E=2e-04 PFAM: PF00515; TPR Domain; E=1.9e-05 NP_865477.1 best DB hits: BLAST: pir:E69078; conserved hypothetical protein MTH1585 -; E=0.28 NP_865479.1 best DB hits: BLAST: ddbj:BAA91540.1; (AK001182) unnamed protein product [Homo sapiens]; E=4e-06 embl:CAB98267.1; (AJ276171) ASPIC [Homo sapiens]; E=9e-06 embl:CAB98268.1; (AJ276171) ASPIC [Homo sapiens] ----- embl:; E=9e-06 PFAM: PF02161; Progesterone receptor; E=0.75 PF01839; FG-GAP repeat; E=7.2e-05 NP_865483.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_865486.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_865487.1 PMID: 9634230 best DB hits: BLAST: pir:G70688; probable lppV protein - Mycobacterium tuberculosis; E=0.019 NP_865488.1 PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=8e-37 pir:S07089; arylsulfatase (EC 3.1.6.1) - sea urchin (Lytechinus; E=3e-34 embl:CAA34667.1; (X16679) arylsulfatase [Hemicentrotus; E=3e-34 COG: aslA; COG3119 Arylsulfatase A and related enzymes; E=1e-16 PFAM: PF00884; Sulfatase; E=6.6e-42 NP_865490.1 PMID: 8843436 PMID: 1850729 best DB hits: BLAST: embl:CAB61926.1; (AL133278) hydrolase [Streptomyces; E=1e-109 embl:CAB95281.1; (AL359779) hydrolase [Streptomyces; E=4e-58 pir:A39405; beta-galactosidase (EC 3.2.1.23) - Clostridium; E=3e-19 COG: BH2723; COG3250 Beta-galactosidase/beta-glucuronidase; E=1e-18 PFAM: PF02837; Glycosyl hydrolases family 2,; E=1.3e-05 PF00703; Glycosyl hydrolases family 2,; E=7.2e-13 NP_865493.1 PMID: 11259647 best DB hits: PFAM: PF02627; Carboxymuconolactone decarbox; E=0.33 NP_865494.1 PMID: 10984043 best DB hits: BLAST: pir:E83259; hypothetical protein PA3089 [imported] - Pseudomonas; E=8e-10 pir:D82119; hypothetical protein VC2094 [imported] - Vibrio cholerae; E=1e-05 PFAM: PF01110; Ciliary neurotrophic factor; E=0.62 NP_865495.1 PMID: 10567266 best DB hits: BLAST: pir:B75555; probable lipaseesterase - Deinococcus radiodurans; E=5e-28 pir:B70961; probable esterase - Mycobacterium tuberculosis (strain; E=2e-19 pir:H70731; probable esterase - Mycobacterium tuberculosis (strain; E=2e-18 COG: DR0133; COG0657 Acetyl esterase; E=5e-29 Rv2045c; COG2272 Carboxylesterase type B; E=7e-08 XF1253; COG0657 Acetyl esterase; E=3e-07 PFAM: PF00036; EF hand; E=0.0067 PF00135; Carboxylesterase; E=0.55 PF00326; Prolyl oligopeptidase; E=0.18 NP_865497.1 PMID: 10198006 best DB hits: BLAST: gb:AAD25394.1; (AF121904) pectate lyase [Azospirillum irakense]; E=7e-51 ddbj:BAA81752.1; (AB028877) pectate lyase E [Bacillus sp.; E=3e-49 gb:AAG29353.1; AF279264_1 (AF279264) pectate lyase [Pseudomonas; E=2e-48 NP_865498.1 PMID: 8843436 best DB hits: BLAST: pir:C70555; hypothetical protein Rv1154c - Mycobacterium; E=0.003 NP_865499.1 PMID: 11722934 best DB hits: BLAST: swissprot:P13734; AGAR_ALTAT BETA-AGARASE PRECURSOR ----- pir:; E=1e-10 NP_865501.1 PMID: 6345153 PMID: 6821375 PMID: 2121129 best DB hits: BLAST: pir:C82079; pyruvate dehydrogenase, E2 component, dihydrolipoamide; E=4e-55 pir:H75540; pyruvate dehydrogenase complex, dihydrolipoamide; E=4e-55 gb:AAK02978.1; (AE006128) AceF [Pasteurella multocida]; E=6e-54 COG: VC2413; COG0508 Dihydrolipoamide acyltransferases; E=3e-56 PFAM: PF00364; Biotin-requiring enzyme; E=2.1e-20 PF02817; e3 binding domain; E=8.5e-14 PF00198; 2-oxo acid dehydrogenases acylt; E=8.5e-100 NP_865502.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC NP_865504.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis NP_865506.1 PMID: 11677609 best DB hits: BLAST: gb:AAC61875.1; (M59935) unknown [Aspergillus nidulans]; E=0.062 pir:T41414; probable receptor-associated protein - fission yeast; E=0.23 NP_865507.1 PMID: 7961402 PMID: 8969504 PMID: 9384377 best DB hits: BLAST: pir:S76379; hypothetical protein - Synechocystis sp. (strain PCC; E=2e-05 swissprot:P37945; LON1_BACSU ATP-DEPENDENT PROTEASE LA 1 -----; E=8e-05 swissprot:O66605; LON_AQUAE ATP-DEPENDENT PROTEASE LA -----; E=1e-04 COG: sll0195; COG2802 Uncharacterized protein, similar to the N-terminal; E=2e-06 BS_lonA; COG0466 ATP-dependent Lon protease, bacterial type; E=8e-06 PFAM: PF02190; ATP-dependent protease La (LON); E=8.3e-08 NP_865508.1 PMID: 9278503 best DB hits: BLAST: swissprot:P75707; YBAZ_ECOLI HYPOTHETICAL 14.4 KD PROTEIN IN; E=1e-04 gb:AAG54804.1; AE005224_9 (AE005224) orf, hypothetical protein; E=2e-04 embl:CAC16996.1; (AL450350) conserved hypothetical protein; E=3e-04 COG: ybaZ; COG0350 Methylated DNA-protein cysteine methyltransferase; E=1e-05 PFAM: PF01035; 6-O-methylguanine DNA methyltr; E=8.4e-05 NP_865509.1 PMID: 10086841 best DB hits: BLAST: ddbj:BAB05303.1; (AP001512) BH1584~unknown conserved protein in; E=1e-18 pir:T34720; probable lipoprotein - Streptomyces coelicolor -----; E=2e-05 pir:T27110; hypothetical protein Y52B11B.2 - Caenorhabditis elegans; E=6e-04 NP_865511.1 best DB hits: PFAM: PF01034; Syndecan domain; E=0.87 NP_865514.1 PMID: 10086841 best DB hits: BLAST: ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=1e-08 pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=2e-07 pir:D71201; hypothetical protein PH1881 - Pyrococcus horikoshii; E=5e-07 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=1e-09 PFAM: PF01408; Oxidoreductase, NAD-bindi; E=1.2e-14 NP_865515.1 PMID: 11859360 best DB hits: BLAST: swissprot:P87051; YDJ3_SCHPO PROBABLE PEPTIDYL-PROLYL CIS-TRANS; E=5e-16 pir:H82708; peptidyl-prolyl cis-trans isomerase XF1212 [imported] -; E=9e-16 pir:H69044; peptidylprolyl isomerase (EC 5.2.1.8) MTH1338; E=2e-14 COG: XF1212; COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) -; E=9e-17 PFAM: PF00160; Cyclophilin type peptidyl-proly; E=1.9e-05 NP_865518.1 PMID: 10694574 best DB hits: BLAST: swissprot:P44815; ISPF_HAEIN 2C-METHYL-D-ERYTHRITOL; E=6e-36 gb:AAF65155.1; AF250236_1 (AF250236) 2C-methyl-D-erythritol; E=3e-34 gb:AAG52445.1; AC010852_2 (AC010852) unknown protein; 376-1789; E=5e-34 COG: HI0671; COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; E=6e-37 BS_yacN; COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate; E=4e-31 VC0529; COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; E=1e-30 PFAM: PF02542; YgbB family; E=9.6e-63 NP_865519.1 PMID: 8501040 best DB hits: BLAST: swissprot:Q03475; LAFB_VIBPA FLAGELLAR HOOK-ASSOCIATED PROTEIN 2; E=4e-12 pir:H72292; hypothetical protein TM1123 - Thermotoga maritima; E=6e-11 gb:AAF19182.1; AF198617_6 (AF198617) FlaH [Aeromonas caviae]; E=2e-09 COG: TM1123; COG1345 Flagellar capping protein; E=6e-12 PFAM: PF02465; Flagellar hook-associated protein 2; E=0.031 NP_865525.1 PMID: 7642123 best DB hits: BLAST: swissprot:P41513; GYRA_ERWCA DNA GYRASE SUBUNIT A ----- pir:; E=1e-105 gb:AAB95117.1; (U56906) DNA gyrase [Serratia marcescens]; E=1e-105 swissprot:P48372; GYRA_PSEAE DNA GYRASE SUBUNIT A ----- pir:; E=1e-104 COG: PA3168; COG0188 DNA gyrase (topoisomerase II) A subunit; E=1e-105 PFAM: PF00521; DNA gyrase/topoisomerase IV, su; E=2.9e-225 NP_865526.1 PMID: 8863738 best DB hits: BLAST: pir:JC4960; DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) B -; E=1e-140 swissprot:P77993; GYRB_THEMA DNA GYRASE SUBUNIT B (TOPOISOMERASE; E=1e-140 gb:AAG21374.1; AF288224_1 (AF288224) DNA Gyrase B subunit; E=1e-136 COG: TM0833; COG0187 DNA gyrase (topoisomerase II) B subunit; E=1e-141 PFAM: PF02518; Histidine kinase-, DNA gyrase B; E=2.1e-26 PF00204; DNA topoisomerase II (N-termina; E=1.3e-54 PF01751; Toprim domain; E=2.9e-10 NP_865528.1 best DB hits: BLAST: gb:AAC09305.1; (AF047044) transposase [Nostoc sp. PCC; E=2e-41 pir:A32816; hypothetical protein, 33K - Pseudomonas atlantica; E=7e-35 pir:B81886; probable transposase NMA1185 [imported] - Neisseria; E=1e-30 PFAM: PF01548; Transposase; E=2.2e-05 PF02371; Transposase IS116/IS110/IS902; E=1.3e-25 NP_865529.1 PMID: 3026317 PMID: 3001025 PMID: 9278503 best DB hits: BLAST: swissprot:P08329; AROL_ECOLI SHIKIMATE KINASE II (SKII) -----; E=2e-22 swissprot:P34003; AROK_PSEAE SHIKIMATE KINASE (SK) ----- pir:; E=4e-20 swissprot:P72796; AROK_SYNY3 SHIKIMATE KINASE (SK) ----- pir:; E=4e-20 COG: aroL; COG0703 Shikimate kinase; E=2e-23 PFAM: PF01583; Adenylylsulfate kinase; E=0.014 PF00005; ABC transporter; E=0.059 PF00910; RNA helicase; E=0.016 NP_865531.1 PMID: 8688087 best DB hits: BLAST: swissprot:Q58408; YA02_METJA HYPOTHETICAL PROTEIN MJ1002 -----; E=4e-23 pir:F75071; hypothetical protein PAB1730 - Pyrococcus abyssi (strain; E=3e-22 pir:B71094; hypothetical protein PH1015 - Pyrococcus horikoshii; E=2e-21 COG: MJ1002; COG1624 Uncharacterized ACR; E=4e-24 PFAM: PF02457; Domain of unknown function DUF147; E=1.2e-26 NP_865532.1 PMID: 3027045 PMID: 8471602 PMID: 10387007 PMID: 10555963 PMID: 8202364 best DB hits: BLAST: swissprot:P53579; AMP1_SYNY3 METHIONINE AMINOPEPTIDASE A; E=3e-57 swissprot:P07906; AMPM_ECOLI METHIONINE AMINOPEPTIDASE (MAP); E=1e-55 swissprot:P10882; AMPM_SALTY METHIONINE AMINOPEPTIDASE (MAP); E=2e-55 COG: slr0918; COG0024 Methionine aminopeptidase; E=3e-58 PFAM: PF00557; metallopeptidase M24; E=9.9e-60 NP_865533.1 PMID: 11254562 best DB hits: PFAM: PF00263; Bacterial type II and III secretion; E=0.021 NP_865534.1 PMID: 1944223 best DB hits: BLAST: pir:D82672; general secretory pathway protein E XF1517 [imported] -; E=1e-114 swissprot:P31742; GSPE_XANCP GENERAL SECRETION PATHWAY PROTEIN E; E=1e-110 pir:T12056; xpsE protein - Xanthomonas campestris pv. campestris; E=1e-110 COG: XF1517; COG2804 Predicted ATPases involved in pili biogenesis, PilB; E=1e-115 PFAM: PF00004; ATPase associated with variou; E=0.13 PF00448; SRP54-type protein, GTPase domain; E=0.038 PF00437; Bacterial type II secretion system p; E=8.8e-156 NP_865535.1 PMID: 1971619 PMID: 10984043 best DB hits: BLAST: pir:A75344; pilin biogenesis protein - Deinococcus radiodurans; E=4e-52 swissprot:P22609; PILC_PSEAE FIMBRIAL ASSEMBLY PROTEIN PILC; E=3e-48 pir:F82546; fimbrial assembly protein XF2538 [imported] - Xylella; E=3e-47 COG: DR1863; COG1459 General secretory pathway protein F; E=4e-53 PFAM: PF01961; Integral membrane protein DUF110; E=0.0065 PF00482; Bacterial type II secretion system p; E=5.1e-83 NP_865537.1 PMID: 2830169 PMID: 2684786 PMID: 1445207 PMID: 9108148 best DB hits: BLAST: gb:AAC24510.1; (AF049243) regulatory protein [Mesorhizobium loti]; E=2e-25 swissprot:P10411; MELR_ECOLI MELIBIOSE OPERON REGULATORY PROTEIN; E=5e-23 ddbj:BAB20427.1; (AB053204) melibiose operon regulatory protein; E=7e-23 COG: melR; COG2207 AraC-type DNA-binding domain-containing proteins; E=5e-24 BS_adaA; COG2169 Adenosine deaminase; E=1e-07 VC1260; COG2207 AraC-type DNA-binding domain-containing proteins; E=1e-07 PFAM: PF00165; Bacterial regulatory helix-turn-heli; E=4.3e-24 NP_865538.1 PMID: 1460002 PMID: 9384377 best DB hits: BLAST: swissprot:Q06004; DHSO_BACSU SORBITOL DEHYDROGENASE (L-IDITOL; E=1e-32 pir:G72376; alcohol dehydrogenase, zinc-containing - Thermotoga; E=2e-27 pir:H71110; probable dehydrogenase - Pyrococcus horikoshii -----; E=9e-25 COG: BS_gutB; COG1063 Threonine dehydrogenase and related Zn-dependent; E=1e-33 PFAM: PF00107; Zinc-binding dehydrogenases; E=2.2e-50 NP_865540.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source NP_865541.1 PMID: 6313683 PMID: 3011793 PMID: 1583688 PMID: 7982928 best DB hits: BLAST: pir:C72311; ribose ABC transporter, periplasmic ribose-binding; E=7e-89 pir:C82497; ribose ABC transporter, periplasmic D-ribose-binding; E=1e-48 pir:JGEBRT; D-ribose-binding protein - Salmonella typhimurium; E=1e-47 COG: TM0958; COG1879 Periplasmic sugar-binding proteins; E=6e-90 BH3727; COG1609 Transcriptional regulators; E=5e-11 yphF; COG1879 Periplasmic sugar-binding proteins; E=1e-10 PFAM: PF00532; Periplasmic binding proteins; E=0.0014 PF00534; Glycosyl transferases group 1; E=0.11 PF00532; Periplasmic binding proteins; E=0.21 NP_865542.1 PMID: 10360571 best DB hits: BLAST: pir:F72314; hypothetical protein TM0957 - Thermotoga maritima; E=2e-09 gb:AAD37311.1; AF135170_2 (AF135170) unknown [Yersinia pestis]; E=0.22 NP_865543.1 PMID: 3011793 PMID: 3086314 PMID: 7686882 best DB hits: BLAST: pir:E72314; ribose ABC transporter ATP-binding protein - Thermotoga; E=1e-132 pir:A82497; ribose ABC transporter ATP-binding protein VCA0128; E=1e-110 swissprot:P04983; RBSA_ECOLI RIBOSE TRANSPORT ATP-BINDING PROTEIN; E=1e-109 COG: TM0956; COG1129 ABC-type sugar (aldose) transport system, ATPase; E=1e-133 PFAM: PF00005; ABC transporter; E=3.5e-55 NP_865544.1 PMID: 7921236 PMID: 9384377 best DB hits: BLAST: pir:D72314; ribose ABC transporter, permease - Thermotoga; E=3e-57 pir:B69690; ribose ABC transporter (permease) rbsC - Bacillus; E=6e-41 pir:B82497; ribose ABC transporter, permease VCA0129; E=2e-40 COG: TM0955; COG1172 Ribose/xylose/arabinose/galactoside ABC-type; E=3e-58 rbsC; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport; E=6e-35 TM0112; COG1172 Ribose/xylose/arabinose/galactoside ABC-type; E=9e-30 PFAM: PF02653; Branched-chain amino acid transp; E=3.8e-10 NP_865545.1 PMID: 3011794 best DB hits: BLAST: embl:CAC12877.1; (AJ404857) ribokinase [Homo sapiens]; E=1e-51 pir:B83403; ribokinase PA1950 [imported] - Pseudomonas aeruginosa; E=2e-50 swissprot:P44331; RBSK_HAEIN RIBOKINASE ----- pir: B64073; E=2e-48 COG: PA1950; COG0524 Sugar kinases, ribokinase; E=2e-51 PFAM: PF00294; pfkB family carbohydrate kinase; E=3.3e-74 NP_865546.1 PMID: 11259647 best DB hits: PFAM: PF01819; Levivirus coat protein; E=0.45 PF00801; PKD domain; E=0.16 NP_865547.1 PMID: 11259647 NP_865548.1 PMID: 11259647 NP_865552.1 best DB hits: BLAST: swissprot:P33119; GALE_CORDI UDP-GLUCOSE 4-EPIMERASE; E=2e-07 pir:A70392; UDP-glucose-4-epimerase - Aquifex aeolicus ----- gb:; E=2e-07 pir:C69149; conserved hypothetical protein MTH380 - Methanobacterium; E=2e-07 COG: VCA0774; COG1087 UDP-glucose 4-epimerase; E=7e-06 Cj1319; COG0451 Nucleoside-diphosphate-sugar epimerases; E=4e-06 MTH631; COG1087 UDP-glucose 4-epimerase; E=1e-06 PFAM: PF01370; NAD dependent epimerase/dehydratase; E=0.56 PF01073; 3-beta hydroxysteroid dehydrogenase; E=0.63 PF01370; NAD dependent epimerase/dehydratase; E=2.9e-05 NP_865553.1 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=1e-06 embl:CAB94634.1; (AL359215) secreted glycosyl hydrolase.; E=7e-04 pir:T35029; hypothetical protein SC4C6.21c - Streptomyces coelicolor; E=0.13 NP_865554.1 PMID: 11259647 best DB hits: BLAST: pir:G72720; probable oligopeptide-binding protein oppA APE0304 -; E=0.73 PFAM: PF00028; Cadherin domain; E=0.14 NP_865555.1 PMID: 11259647 NP_865557.1 PMID: 8843436 best DB hits: BLAST: embl:CAB71255.1; (AL138598) ArsR-family transcriptional; E=2e-06 pir:S74901; arsenical resistance operon repressor - Synechocystis; E=9e-05 pir:D64465; hypothetical protein MJ1325 - Methanococcus jannaschii; E=1e-04 COG: sll1957; COG0640 Predicted transcriptional regulators; E=9e-06 PFAM: PF01022; Bacterial regulatory protein, arsR f; E=9.4e-13 NP_865559.1 PMID: 7751272 best DB hits: BLAST: pir:C83558; hypothetical protein PA0692 [imported] - Pseudomonas; E=1e-15 swissprot:P45356; HXB2_HAEIN HEMEHEMOPEXIN UTILIZATION PROTEIN B; E=2e-05 swissprot:P44601; HXB1_HAEIN HEMEHEMOPEXIN UTILIZATION PROTEIN B; E=3e-05 COG: PA0692; COG2831 Hemolysin activation/secretion protein; E=1e-16 NP_865562.1 PMID: 7815944 best DB hits: BLAST: pir:F83068; hypothetical protein PA4625 [imported] - Pseudomonas; E=5e-25 gb:AAA20524.1; (U08875) adhesin [Haemophilus influenzae]; E=1e-19 pir:B43855; high-molecular-weight surface-exposed protein -; E=2e-19 NP_865563.1 PMID: 11743194 best DB hits: BLAST: pir:S74570; alkaline phosphatase (EC 3.1.3.1) phoA - Synechocystis; E=0.002 pir:T05561; hypothetical protein F22K18.70 - Arabidopsis thaliana; E=0.24 embl:CAB08432.1; (Z95151) Icc [Mycobacterium leprae]; E=0.54 COG: sll0222; COG1409 Predicted phosphohydrolases; E=2e-04 PFAM: PF01425; Amidase; E=0.24 NP_865564.1 best DB hits: BLAST: ddbj:BAA91540.1; (AK001182) unnamed protein product [Homo sapiens]; E=1e-05 embl:CAB98267.1; (AJ276171) ASPIC [Homo sapiens]; E=4e-05 embl:CAB98268.1; (AJ276171) ASPIC [Homo sapiens] ----- embl:; E=4e-05 NP_865566.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_865571.1 PMID: 9573174 best DB hits: BLAST: ddbj:BAB05677.1; (AP001513) BH1958~unknown conserved protein; E=1e-07 swissprot:O33813; LACR_STAXY LACTOSE OPERON TRANSCRIPTION; E=4e-07 ddbj:BAB07561.1; (AP001520) two-component response regulator; E=6e-07 COG: BH1958; COG2207 AraC-type DNA-binding domain-containing proteins; E=1e-08 BH0394; COG2169 Adenosine deaminase; E=2e-06 PA2337; COG2207 AraC-type DNA-binding domain-containing proteins; E=3e-06 PFAM: PF00165; Bacterial regulatory helix-turn-heli; E=3.7e-20 NP_865572.1 PMID: 1909424 best DB hits: BLAST: swissprot:P26223; XYNB_BUTFI ENDO-1,4-BETA-XYLANASE B (XYLANASE B); E=2e-10 prf:1718306A; xylanase [Butyrivibrio fibrisolvens]; E=2e-10 gb:AAK04528.1; AE006280_4 (AE006280) sugar hydrolase [Lactococcus; E=4e-07 COG: DR0133; COG0657 Acetyl esterase; E=0.007 PFAM: PF01738; Dienelactone hydrolase; E=0.027 NP_865574.1 PMID: 9620975 best DB hits: BLAST: pir:T44787; glucokinase (EC 2.7.1.2) [imported] - Bacillus; E=5e-14 swissprot:Q44406; XYLR_ANATH XYLOSE REPRESSOR ----- embl:; E=5e-13 gb:AAK06121.1; AE006432_3 (AE006432) glucose kinase (EC 2.7.1.2); E=6e-12 COG: BS_glcK; COG1940 Transcriptional regulators; E=6e-13 PFAM: PF00480; ROK family; E=3.2e-21 NP_865575.1 PMID: 3284790 best DB hits: BLAST: swissprot:O97440; GNP2_GIALA GLUCOSAMINE-6-PHOSPHATE ISOMERASE 2; E=1e-44 swissprot:O31458; YBFT_BACSU HYPOTHETICAL 27.3 KD PROTEIN IN; E=5e-44 swissprot:O35000; NAGB_BACSU GLUCOSAMINE-6-PHOSPHATE ISOMERASE; E=4e-43 COG: BS_ybfT; COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate; E=4e-45 DRA0063; COG2120 Uncharacterized proteins, LmbE homologs; E=0.002 PFAM: PF01182; Glucosamine-6-phosphate isome; E=2e-70 PF02585; Uncharacterized LmbE-like pro; E=3.6e-07 NP_865584.1 PMID: 11759840 NP_865586.1 PMID: 8921895 best DB hits: BLAST: swissprot:P44677; TOLB_HAEIN TOLB PROTEIN PRECURSOR ----- pir:; E=4e-04 pir:JC5213; tolB protein - Haemophilus influenzae ----- gb:; E=0.001 pir:F82625; TolB protein precursor XF1897 [imported] - Xylella; E=0.001 COG: HI0382; COG0823 Periplasmic component of the Tol biopolymer transport; E=4e-05 NP_865590.1 best DB hits: BLAST: pir:S75452; hypothetical protein slr1506 - Synechocystis sp. (strain; E=2e-09 pir:S76481; hypothetical protein - Synechocystis sp. (strain PCC; E=5e-09 ddbj:BAB04446.1; (AP001509) BH0727~unknown conserved protein in; E=5e-08 NP_865593.1 PMID: 10952301 best DB hits: BLAST: pir:F82291; conserved hypothetical protein VC0689 [imported] -; E=4e-81 pir:G83177; probable sodiumhydrogen antiporter PA3739 [imported] -; E=3e-80 pir:S75742; hypothetical protein sll0556 - Synechocystis sp. (strain; E=1e-36 COG: VC0689_1; COG0025 NhaP-type Na+/H+ and K+/H+ antiporters; E=2e-58 PFAM: PF00999; Sodium/hydrogen exchanger fami; E=8.8e-35 PF00698; Acyl transferase domain; E=0.27 PF02254; KTN NAD-binding domain; E=0.0024 NP_865596.1 best DB hits: BLAST: pir:G82262; probable exopolysaccharide biosynthesis protein VC0937; E=3e-06 pir:S67819; GumC protein - Xanthomonas campestris ----- gb:; E=3e-04 pir:D83367; hypothetical protein PA2235 [imported] - Pseudomonas; E=0.002 COG: PA2235; COG3206 Uncharacterized protein involved in; E=2e-04 PFAM: PF02706; Chain length determinant protein; E=0.23 NP_865597.1 PMID: 8843436 best DB hits: BLAST: embl:CAB58332.1; (AL121855) transferase [Streptomyces; E=9e-44 pir:D72511; probable hexosyltransferase (EC 2.4.1.-) APE2066; E=4e-12 pir:D69143; LPS biosynthesis RfbU related protein - Methanobacterium; E=4e-12 COG: APE2066; COG0438 Predicted glycosyltransferases; E=4e-13 PFAM: PF00534; Glycosyl transferases group 1; E=8e-32 NP_865598.1 PMID: 9384377 best DB hits: BLAST: pir:G69849; endo-1,4-beta-xylanase homolog yjeA - Bacillus subtilis; E=6e-04 pir:A70081; conserved hypothetical protein yxkH - Bacillus subtilis; E=0.001 pir:A75376; probable oligosaccharide deacetylase - Deinococcus; E=0.003 COG: BS_yjeA_2; COG0726 Predicted xylanase/chitin deacetylase; E=6e-05 PFAM: PF01522; Polysaccharide deacetylase; E=0.0029 NP_865599.1 PMID: 11016950 best DB hits: BLAST: gb:AAG20546.1; (AE005125) nitrogen fixation protein; NifU; E=2e-22 ddbj:BAB07187.1; (AP001518) nitrogen fixation protein [Bacillus; E=4e-16 swissprot:Q9X192; NIFU_THEMA NIFU-LIKE PROTEIN ----- pir:; E=4e-15 COG: VNG2472G; COG0822 NifU homologs involved in Fe-S cluster formation; E=2e-23 PFAM: PF01592; NifU-like N terminal domain; E=1e-22 NP_865600.1 PMID: 9384377 PMID: 2644218 PMID: 3040672 PMID: 8464885 PMID: 8161529 best DB hits: BLAST: pir:T35993; probable aminotransferase - Streptomyces coelicolor; E=3e-98 pir:S76601; hypothetical protein - Synechocystis sp. (strain PCC; E=1e-97 pir:F70019; nifS protein homolog yurW - Bacillus subtilis -----; E=3e-95 COG: slr0077; COG0520 Selenocysteine lyase; E=1e-98 PFAM: PF00266; Aminotransferase class-V; E=7.2e-16 NP_865601.1 PMID: 3021756 PMID: 6284744 PMID: 9278503 best DB hits: BLAST: gb:AAA24766.1; (J02599) Exonuclease VII large subunit; E=2e-56 swissprot:P04994; EX7L_ECOLI EXODEOXYRIBONUCLEASE VII LARGE; E=4e-56 pir:B82282; exodeoxyribonuclease VII, large chain VC0766 [imported]; E=2e-55 COG: xseA; COG1570 Exonuclease VII, large subunit; E=4e-57 PFAM: PF01336; OB-fold nucleic acid binding dom; E=3.6e-11 PF02601; Exonuclease VII, large subunit; E=3.5e-45 NP_865602.1 PMID: 8453663 PMID: 9118811 best DB hits: BLAST: gb:AAF53651.1; (AE003657) kel gene product [Drosophila; E=8e-17 swissprot:Q04652; KELC_DROME RING CANAL KELCH PROTEIN [CONTAINS:; E=8e-17 gb:AAA53471.1; (L08483) ring canal protein [Drosophila; E=1e-15 PFAM: PF01344; Kelch motif; E=2.6e-07 NP_865604.1 PMID: 8200539 best DB hits: BLAST: embl:CAB61821.1; (AL133236) polyguluronate lyase; E=1e-33 ddbj:BAA83339.1; (AB030481) polyguluronate lyase [Corynebacterium; E=7e-33 swissprot:Q59478; ALYA_KLEPN ALGINATE LYASE PRECURSOR; E=4e-08 PFAM: PF00217; ATP:guanido phosphotransferase; E=0.69 NP_865605.1 PMID: 9384377 best DB hits: BLAST: gb:AAB01192.1; (U55864) apical gut membrane polyprotein; E=0.015 embl:CAB60199.1; (AJ250881) P1a6 protein [Haemonchus contortus]; E=0.015 swissprot:P39839; YUXL_BACSU PROBABLE PEPTIDASE YUXL -----; E=0.034 COG: BS_yuxL; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; E=0.003 HI0382; COG0823 Periplasmic component of the Tol biopolymer; E=0.007 NP_865606.1 PMID: 9384377 best DB hits: BLAST: pir:H83386; conserved hypothetical protein PA2072 [imported] -; E=1e-82 swissprot:P55552; Y4LL_RHISN HYPOTHETICAL 91.8 KD PROTEIN Y4LL; E=9e-82 pir:C83070; conserved hypothetical protein PA4601 [imported] -; E=7e-81 COG: PA2072_4; COG2200 Diguanylate cyclase/phosphodiesterase domain 2; E=2e-52 yddU_3; COG2200 Diguanylate cyclase/phosphodiesterase domain 2 (EAL); E=1e-45 PA0575_4; COG2200 Diguanylate cyclase/phosphodiesterase domain 2; E=2e-44 PFAM: PF00072; Response regulator receiver doma; E=0.52 PF00990; GGDEF domain; E=2.2e-63 PF00563; Domain of unknown function 2; E=3.6e-67 NP_865607.1 PMID: 2046550 PMID: 1766374 best DB hits: BLAST: gb:AAD12184.1; (U57900) utilizing regulatory protein tutC; E=4e-13 swissprot:P26489; FIXL_AZOCA SENSOR PROTEIN FIXL ----- pir:; E=6e-13 ddbj:BAA89701.1; (AB030079) 145..153:the transposed position of; E=7e-13 COG: VNG1464G_1; COG2202 PAS/PAC domain; E=4e-11 BH0536; COG0642 Sensory transduction histidine kinases; E=4e-11 BS_ytvA_1; COG2202 PAS/PAC domain; E=2e-09 PFAM: PF00989; PAS domain; E=0.00031 PF00785; PAC motif; E=3e-08 PF02518; Histidine kinase-, DNA gyrase B-; E=8e-26 NP_865611.1 PMID: 10984043 best DB hits: BLAST: embl:CAA98155.1; (Z73914) ORF378 protein [Pseudomonas stutzeri]; E=1e-15 pir:E83414; conserved hypothetical protein PA1854 [imported] -; E=2e-14 pir:S77003; hypothetical protein slr0789 - Synechocystis sp. (strain; E=1e-10 NP_865613.1 PMID: 8346225 PMID: 9278503 best DB hits: BLAST: swissprot:Q06065; ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY; E=8e-80 swissprot:P21712; YFHA_ECOLI HYPOTHETICAL 49.1 KDA PROTEIN IN; E=3e-75 gb:AAG45333.1; AF273214_1 (AF273214) SasR [Myxococcus xanthus]; E=4e-74 COG: atoC; COG2204 AAA superfamily ATPases with N-terminal receiver; E=8e-81 PFAM: PF00072; Response regulator receiver doma; E=5.1e-26 PF00158; Sigma-54 interaction domain; E=2.8e-114 NP_865614.1 PMID: 8346225 PMID: 9278503 best DB hits: BLAST: embl:CAB64771.1; (AJ007794) kin1 [Bacillus cereus] -----; E=3e-20 gb:AAD47812.1; (AF163841) histidine protein kinase; E=1e-19 pir:G82495; probable C4-dicarboxylate transport sensor protein; E=7e-19 COG: VCA0141; COG0642 Sensory transduction histidine kinases; E=7e-20 PFAM: PF00989; PAS domain; E=0.031 PF00785; PAC motif; E=1.5e-10 PF00512; His Kinase A (phosphoacceptor) doma; E=1.3e-12 NP_865617.1 PMID: 2839489 PMID: 1657980 PMID: 1645730 PMID: 8381959 best DB hits: BLAST: pir:B71805; Na+H+-exchanging protein 1 - Helicobacter pylori; E=4e-73 pir:H64713; Na+H+-exchanging protein - Helicobacter pylori (strain; E=1e-72 pir:JX0360; Na+H+-exchanging protein - Vibrio parahaemolyticus; E=2e-65 COG: jhp1447; COG3004 Na+/H+ antiporter; E=4e-74 NP_865622.1 PMID: 10567266 best DB hits: BLAST: pir:G75469; conserved hypothetical protein - Deinococcus radiodurans; E=5e-33 swissprot:Q49757; YP69_MYCLE HYPOTHETICAL 31.1 KDA PROTEIN; E=4e-09 pir:E83429; conserved hypothetical protein PA1732 [imported] -; E=6e-09 COG: DR0843; COG1305 transglutaminases, cysteine; E=5e-34 PFAM: PF01841; Transglutaminase-like superfam; E=5.8e-16 NP_865623.1 PMID: 10984043 best DB hits: BLAST: pir:D83354; hypothetical protein PA2331 [imported] - Pseudomonas; E=7e-26 pir:B81134; macrophage infectivity potentiator-related protein; E=2e-19 pir:D81888; hypothetical protein NMA1203 [imported] - Neisseria; E=4e-18 COG: PA2331; COG2128 Uncharacterized ACR; E=6e-27 NP_865624.1 PMID: 8905231 best DB hits: BLAST: pir:S77301; hypothetical protein sll1308 - Synechocystis sp. (strain; E=2e-62 gb:AAD46515.1; AF145724_4 (AF145724) oxidoreductase homolog; E=2e-16 pir:T37016; probable oxidoreductase - Streptomyces coelicolor; E=2e-14 COG: sll1308; COG1028 Dehydrogenases with different specificities; E=2e-63 Rv3174; COG1028 Dehydrogenases with different specificities (related; E=4e-14 slr0315; COG1028 Dehydrogenases with different specificities; E=1e-10 PFAM: PF00107; Zinc-binding dehydrogenases; E=0.013 PF00106; short chain dehydrogenase; E=2.2e-34 NP_865627.1 PMID: 8843436 best DB hits: BLAST: embl:CAB94634.1; (AL359215) secreted glycosyl hydrolase.; E=4e-06 pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=3e-05 pir:T35028; probable glycosyl hydrolase - Streptomyces coelicolor; E=2e-04 NP_865628.1 PMID: 9384377 best DB hits: BLAST: pir:C69797; conserved hypothetical protein yesT - Bacillus subtilis; E=4e-27 gb:AAF25818.1; AF184175_1 (AF184175) cephalosporin C deacetylase; E=2e-23 pir:H69797; rhamnogalacturonan acetylesterase homolog yesY -; E=2e-22 NP_865629.1 PMID: 9384377 best DB hits: BLAST: swissprot:O34499; YKGB_BACSU HYPOTHETICAL 38.4 KDA PROTEIN IN; E=2e-41 embl:CAB66198.1; (AL136502) hypothetical protein SCF43.09.; E=2e-41 pir:A83120; conserved hypothetical protein PA4204 [imported] -; E=9e-41 COG: BS_ykgB; COG2706 3-carboxymuconate cyclase; E=2e-42 PFAM: PF01453; Lectin (probable mannose binding); E=0.047 NP_865634.1 best DB hits: BLAST: pir:T36464; probable oxidoreductase - Streptomyces coelicolor; E=3e-07 ddbj:BAB05884.1; (AP001514) BH2165~unknown conserved protein; E=6e-06 ddbj:BAB04206.1; (AP001508) BH0487~unknown conserved protein; E=3e-05 COG: BH2165; COG0673 Predicted dehydrogenases and related proteins; E=6e-07 PFAM: PF01408; Oxidoreductase, NAD-bindi; E=6e-18 NP_865637.1 PMID: 10952301 best DB hits: BLAST: pir:F82388; transcriptional regulator AraCXylS family VCA1001; E=3e-25 pir:C83237; probable transcriptional regulator PA3269 [imported] -; E=2e-24 embl:CAB88172.1; (AL352972) araC-family regulatory; E=1e-23 COG: VCA1001; COG2207 AraC-type DNA-binding domain-containing proteins; E=2e-26 PFAM: PF00165; Bacterial regulatory helix-turn-heli; E=3e-20 NP_865640.1 PMID: 9349712 PMID: 10639368 best DB hits: BLAST: gb:AAF01818.1; AF187532_14 (AF187532) polyketide cyclase; E=6e-05 pir:D70817; hypothetical protein Rv1716 - Mycobacterium tuberculosis; E=0.17 gb:AAG30196.1; (AF293442) cyclase [Streptomyces sp. R1128]; E=0.33 NP_865641.1 PMID: 1556094 PMID: 9384377 best DB hits: BLAST: pir:E70027; probable 3-oxoacyl-[acyl-carrier-protein] reductase (EC; E=6e-73 pir:H83476; probable short-chain dehydrogenase PA1344 [imported] -; E=7e-62 embl:CAB60468.1; (AL132856) probable oxidoreductase [Streptomyces; E=8e-54 COG: BS_yvaG; COG1028 Dehydrogenases with different specificities; E=6e-74 PA1344; COG1028 Dehydrogenases with different specificities (related; E=7e-63 BS_yvrD; COG1028 Dehydrogenases with different specificities; E=3e-54 PFAM: PF00106; short chain dehydrogenase; E=1.9e-41 PF00678; Short chain dehydrogenase/reduct; E=3.3e-08 NP_865652.1 PMID: 2824781 best DB hits: BLAST: gb:AAK04755.1; AE006299_1 (AE006299) transposase of IS981C; E=1e-09 gb:AAK05346.1; AE006357_1 (AE006357) transposase of IS981G; E=1e-09 gb:AAK06124.1; AE006432_6 (AE006432) transposase of IS981J; E=1e-09 COG: PA0257; COG2801 transposase; E=1e-07 yagA; COG1425 Predicted transposase; E=6e-05 HI1721; COG2801 transposase; E=9e-05 PFAM: PF00665; Integrase core domain; E=2.5e-27 NP_865654.1 best DB hits: PFAM: PF00501; AMP-binding enzyme; E=0.031 NP_865655.1 best DB hits: BLAST: embl:CAA84826.1; (Z35768) ORF YBL007c [Saccharomyces cerevisiae]; E=0.22 NP_865656.1 PMID: 9473043 best DB hits: BLAST: embl:CAB53356.1; (AJ010260) NosX protein [Paracoccus; E=6e-14 gb:AAD09162.2; (AF047429) NosX [Achromobacter cycloclastes]; E=1e-13 pir:F81184; thiamin biosynthesis lipoprotein ApbE NMB0563 [imported]; E=1e-12 COG: NMB0563; COG1477 Membrane-associated lipoprotein involved in; E=1e-13 VC2289; COG1477 Membrane-associated lipoprotein involved in thiamine; E=2e-13 aq_1258; COG1477 Membrane-associated lipoprotein involved in; E=1e-09 PFAM: PF02424; ApbE family; E=2.7e-28 NP_865657.1 PMID: 20437337 best DB hits: BLAST: pir:B83125; conserved hypothetical protein PA4169 [imported] -; E=5e-32 embl:CAB71827.1; (AL138662) hypothetical protein SC8E4A.22; E=2e-14 pir:D70063; hypothetical protein ywnA - Bacillus subtilis -----; E=8e-08 COG: PA4169; COG1959 Predicted transcriptional regulator; E=5e-33 PFAM: PF02082; Uncharacterized protein family UPF00; E=0.0035 NP_865658.1 PMID: 10086842 best DB hits: BLAST: pir:T44299; hypothetical protein ycgJ [imported] - Bacillus; E=2e-25 ddbj:BAB04377.1; (AP001509) BH0658~unknown conserved protein; E=2e-25 pir:G83392; hypothetical protein PA2034 [imported] - Pseudomonas; E=1e-08 COG: BH0658; COG0500 SAM-dependent methyltransferases; E=2e-26 DR2405; COG2226 Methylase involved in ubiquinone/menaquinone; E=5e-04 PA3515; COG0500 SAM-dependent methyltransferases; E=0.002 NP_865662.1 PMID: 8843436 best DB hits: BLAST: embl:CAC14345.1; (AL445945) zinc-binding oxidoreductase; E=2e-32 pir:C70418; probable alcohol dehydrogenase (EC 1.1.1.-) - Aquifex; E=4e-28 embl:CAB70647.1; (AL137242) zinc-binding oxidoreductase; E=2e-27 COG: aq_1362; COG0604 NADPH:quinone reductase and related Zn-dependent; E=3e-29 PFAM: PF00696; Amino acid kinase; E=0.7 PF00107; Zinc-binding dehydrogenases; E=2.2e-72 NP_865664.1 PMID: 10984043 best DB hits: BLAST: pir:C83343; probable hydrolase PA2419 [imported] - Pseudomonas; E=6e-66 gb:AAD16957.1; (AF106566) SlsA [Salmonella typhimurium]; E=2e-62 pdb:1YAC; A Chain A, The 1.8 Angstrom Crystal Structure Of The; E=6e-42 COG: PA2419; COG1335 Amidases related to nicotinamidase; E=6e-67 PFAM: PF00857; Isochorismatase; E=7e-11 NP_865665.1 PMID: 10543838 best DB hits: BLAST: pir:E83158; probable transcriptional regulator PA3898 [imported] -; E=1e-17 ddbj:BAA86295.1; (AB006902) XylsAraC-type transcriptional; E=2e-17 pir:S77548; lumQ protein - Synechocystis sp. (strain PCC 6803); E=4e-16 COG: PA3898; COG2207 AraC-type DNA-binding domain-containing proteins; E=1e-18 PFAM: PF00165; Bacterial regulatory helix-turn-heli; E=8e-24 NP_865667.1 PMID: 9143122 best DB hits: BLAST: swissprot:O05691; THCF_RHOER NON-HEME HALOPEROXIDASE ----- gb:; E=1e-113 swissprot:P25026; PRXC_PSEPY NON-HEME CHLOROPEROXIDASE (CHLORIDE; E=1e-111 pir:G83304; chloroperoxidase precursor PA2717 [imported] -; E=1e-106 COG: PA2717; COG0596 Predicted hydrolases or acyltransferases (alpha/beta; E=1e-107 slr0314; COG0596 Predicted hydrolases or acyltransferases; E=4e-49 AF0865; COG0596 Predicted hydrolases or acyltransferases (alpha/beta; E=3e-12 PFAM: PF02230; Phospholipase/Carboxylesterase; E=0.035 PF00561; alpha/beta hydrolase fold; E=3.5e-40 NP_865669.1 PMID: 10567266 NP_865671.1 PMID: 11759840 best DB hits: BLAST: embl:CAA74280.1; (Y13942) GTN Reductase [Agrobacterium; E=1e-14 pir:C82391; N-ethylmaleimide reductase VCA0993 [imported] - Vibrio; E=2e-14 gb:AAD16106.1; (AF093246) NAD(P)H-dependent 2-cyclohexen-1-one; E=2e-13 COG: VCA0993; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme; E=2e-15 nemA; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family; E=4e-10 YPL171c; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme; E=7e-10 PFAM: PF00724; NADH:flavin oxidoreductase / NAD; E=3.3e-21 NP_865672.1 PMID: 10984043 best DB hits: BLAST: pir:D83102; xenobiotic reductase PA4356 [imported] - Pseudomonas; E=1e-33 gb:AAD16106.1; (AF093246) NAD(P)H-dependent 2-cyclohexen-1-one; E=6e-32 ddbj:BAA88211.1; (AB025798) NAD(P)H-dependent 2-cyclohexen-1-one; E=1e-31 COG: PA4356; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme; E=1e-34 nemA; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family; E=1e-27 VCA0998; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme; E=8e-26 PFAM: PF00724; NADH:flavin oxidoreductase / NAD; E=2e-38 NP_865674.1 PMID: 10567266 best DB hits: BLAST: pir:D75588; transcriptional regulator, HTH_1 family - Deinococcus; E=1e-15 swissprot:Q04778; ALSR_BACSU ALS OPERON REGULATORY PROTEIN -----; E=3e-15 pir:A83017; probable transcriptional regulator PA5029 [imported] -; E=6e-15 COG: DRA0336; COG0583 Transcriptional regulator; E=1e-16 PFAM: PF00126; Bacterial regulatory helix-turn-heli; E=1.7e-25 NP_865675.1 PMID: 10496884 best DB hits: BLAST: gb:AAD54118.1; AF134978_1 (AF134978) transcriptional; E=1e-10 pir:T47029; hypothetical protein [imported] - Yersinia pestis; E=3e-10 gb:AAC79916.1; (U93090) LysR-type regulatory protein [Comamonas; E=1e-08 COG: PA5029; COG0583 Transcriptional regulator; E=1e-07 NP_865676.1 PMID: 7542800 best DB hits: BLAST: swissprot:P44550; APBE_HAEIN THIAMINE BIOSYNTHESIS LIPOPROTEIN; E=2e-24 pir:D72239; conserved hypothetical protein - Thermotoga maritima; E=7e-24 gb:AAK03418.1; (AE006171) ApbE [Pasteurella multocida]; E=4e-23 COG: HI0172; COG1477 Membrane-associated lipoprotein involved in thiamine; E=2e-25 NMB0563; COG1477 Membrane-associated lipoprotein involved in; E=6e-22 XF0594; COG1477 Membrane-associated lipoprotein involved in thiamine; E=2e-20 PFAM: PF02424; ApbE family; E=3.5e-52 NP_865678.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis NP_865679.1 PMID: 10484179 best DB hits: BLAST: ddbj:BAB04808.1; (AP001510) BH1089~unknown conserved protein; E=1e-160 swissprot:P54608; YHCX_BACSU HYPOTHETICAL 60.2 KD PROTEIN IN; E=1e-156 pir:JC4601; hypothetical 48.2k protein - Sphingomonas yanoikuyae; E=5e-76 COG: BH1089_2; COG0388 Predicted amidohydrolase; E=1e-101 BH1089_1; COG0454 Histone acetyltransferase HPA2 and related; E=5e-52 DR2433; COG0388 Predicted amidohydrolase; E=7e-26 PFAM: PF00583; Acetyltransferase (GNAT) family; E=0.0021 PF00795; Carbon-nitrogen hydrolase; E=1.3e-32 NP_865682.1 PMID: 10484179 best DB hits: BLAST: ddbj:BAB06601.1; (AP001517) 3-oxoacyl-(acyl-carrier protein); E=4e-12 pir:G69842; 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); E=5e-11 pir:C72335; 3-oxoacyl-(acyl carrier protein) synthase II -; E=6e-10 COG: BH2882; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; E=4e-13 PFAM: PF00109; Beta-ketoacyl synthase, N-ter; E=0.00032 PF02801; Beta-ketoacyl synthase, C-ter; E=1.2e-08 NP_865683.1 PMID: 10984043 best DB hits: BLAST: pir:G83495; hypothetical protein PA1203 [imported] - Pseudomonas; E=2e-05 embl:CAC04241.1; (AL391515) hypothetical protein SC4B10.36c; E=0.001 embl:CAB87336.1; (AL163672) hypothetical protein SCE50.14c; E=0.006 COG: PA1203; COG1765 Uncharacterized ACR; E=2e-06 NP_865684.1 best DB hits: BLAST: pir:T27128; hypothetical protein Y53C12A.2 - Caenorhabditis elegans; E=0.79 NP_865687.1 PMID: 11466270 best DB hits: BLAST: gb:AAF20816.1; AF198628_2 (AF198628) RpoS [Xenorhabdus; E=7e-48 gb:AAG14981.1; AF242209_6 (AF242209) alternative sigma factor; E=3e-47 gb:AAG53883.1; AF275947_2 (AF275947) sigma factor RpoS; E=3e-47 COG: VC0534; COG0568 DNA-directed RNA polymerase sigma subunits; E=8e-48 PFAM: PF00140; Sigma-70 factor; E=1.3e-77 NP_865688.1 PMID: 9767151 best DB hits: BLAST: pir:A55541; heterocyst maturation protein devA - Anabaena sp.; E=4e-54 embl:CAA05977.1; (AJ003195) ATP-binding subunit [Anabaena; E=1e-53 pir:S76632; hypothetical protein - Synechocystis sp. (strain PCC; E=2e-49 COG: sll0484; COG1136 ABC-type (unclassified) transport system, ATPase; E=2e-50 PA2350; COG1135 Uncharacterized ABC-type transport system ATPase; E=6e-26 TM0352; COG1136 ABC-type (unclassified) transport system, ATPase; E=2e-25 PFAM: PF01583; Adenylylsulfate kinase; E=0.19 PF00005; ABC transporter; E=3.2e-50 PF00027; Cyclic nucleotide-binding domain; E=1.6e-20 NP_865689.1 PMID: 11759840 best DB hits: BLAST: pir:S76813; hypothetical protein sll1481 - Synechocystis sp. (strain; E=7e-07 embl:CAA59428.1; (X85107) alpha3a subunit of laminin 5 [Homo; E=0.040 embl:CAA59429.1; (X85108) alpha3b subunit of laminin 5 [Homo; E=0.040 COG: sll1481; COG0845 Membrane-fusion protein; E=6e-08 PFAM: PF00364; Biotin-requiring enzyme; E=0.26 NP_865690.1 best DB hits: BLAST: pir:S76812; hypothetical protein - Synechocystis sp. (strain PCC; E=3e-33 embl:CAA67986.1; (X99672) devC [Anabaena sp.]; E=3e-32 embl:CAA05976.1; (AJ003195) membrane spanning subunit [Anabaena; E=1e-31 PFAM: PF02687; Predicted permease; E=1.1e-09 NP_865691.1 PMID: 9174344 best DB hits: BLAST: pir:G82785; dTDP-glucose 4-6-dehydratase XF0611 [imported] - Xylella; E=1e-116 pir:S75550; dTDP-glucose 4-6-dehydratase - Synechocystis sp. (strain; E=1e-114 pir:T00419; dTDP-glucose 4-6-dehydratase homolog T30B22.4 -; E=1e-101 COG: XF0611; COG0451 Nucleoside-diphosphate-sugar epimerases; E=1e-117 MTH1789; COG1088 dTDP-D-glucose 4,6-dehydratase; E=2e-21 PA3554_2; COG0451 Nucleoside-diphosphate-sugar epimerases; E=3e-21 PFAM: PF01073; 3-beta hydroxysteroid dehydrogenase; E=0.0012 PF00106; short chain dehydrogenase; E=0.0069 PF01370; NAD dependent epimerase/dehydratase; E=3e-14 NP_865693.1 PMID: 10360571 best DB hits: BLAST: swissprot:O86953; PANC_THENE PANTOATE--BETA-ALANINE LIGASE; E=2e-61 swissprot:Q9X0G6; PANC_THEMA PANTOATE--BETA-ALANINE LIGASE; E=2e-60 gb:AAG61078.1; AF322013_197 (AF322013) ID912 [Bradyrhizobium; E=9e-58 COG: TM1077; COG0414 Pantoate-beta-alanine ligase; E=2e-61 PFAM: PF02569; Pantoate-beta-alanine ligase; E=5.1e-126 NP_865694.1 PMID: 9389475 best DB hits: BLAST: gb:AAB90131.1; (AE001027) conserved hypothetical protein; E=3e-15 pir:A70326; conserved hypothetical protein aq_283 - Aquifex aeolicus; E=4e-14 pir:S77403; conserved hypothetical protein sll1142 - Synechocystis; E=1e-12 COG: AF1107; COG1259 Uncharacterized ACR; E=3e-16 PFAM: PF02577; Uncharacterized ACR, COG1259; E=3.9e-26 NP_865696.1 PMID: 8752337 best DB hits: BLAST: pir:D72335; flagellin - Thermotoga maritima (strain MSB8) -----; E=4e-18 swissprot:P02968; FLA_BACSU FLAGELLIN ----- pir: FLBS68; E=6e-18 gb:AAC27808.1; (AF069392) polar flagellin [Vibrio; E=6e-18 COG: TM0758; COG1344 Flagellin and related hook-associated proteins; E=4e-19 PFAM: PF00669; Bacterial flagellin N-terminus; E=2.8e-27 PF00700; Bacterial flagellin C-terminus; E=2.1e-17 NP_865697.1 best DB hits: PFAM: PF02617; Uncharacterized ACR, COG2127; E=0.12 NP_865701.1 PMID: 10360571 best DB hits: BLAST: pir:F72286; flagellar protein FliS - Thermotoga maritima (strain; E=5e-05 COG: TM1179; COG1516 Flagellar protein; E=5e-06 PFAM: PF02561; Flagellar protein FliS; E=0.57 NP_865702.1 PMID: 9174344 best DB hits: BLAST: gb:AAB84886.1; (AE000823) UDP-glucose 4-epimerase homolog; E=4e-65 pir:C69149; conserved hypothetical protein MTH380 - Methanobacterium; E=4e-65 gb:AAG18703.1; (AE004975) GDP-D-mannose dehydratase; Gmd; E=9e-61 COG: MTH380; COG0451 Nucleoside-diphosphate-sugar epimerases; E=4e-66 aq_1069; COG1087 UDP-glucose 4-epimerase; E=1e-26 PFAM: PF00106; short chain dehydrogenase; E=0.0021 PF01073; 3-beta hydroxysteroid dehydrogenase; E=1.3e-07 PF01370; NAD dependent epimerase/dehydratase; E=3.7e-88 NP_865704.1 PMID: 8244397 PMID: 8325651 best DB hits: BLAST: gb:AAA16877.1; (L13329) iduronate-2-sulfatase [Homo sapiens]; E=2e-42 gb:AAB33747.1; iduronate-2-sulfatase, IDS {EC 3.1.6.13} [human,; E=1e-41 gb:AAA59192.1; (L04586) iduronate 2-sulfatase [Homo sapiens]; E=2e-40 COG: PA2333; COG3119 Arylsulfatase A and related enzymes; E=6e-37 yejM; COG3083 Predicted hydrolase of alkaline phosphatase; E=9e-07 BS_yfnI; COG1368 Phosphoglycerol transferase and related proteins,; E=3e-06 PFAM: PF00884; Sulfatase; E=4.9e-29 NP_865707.1 PMID: 9972265 best DB hits: BLAST: pir:G75337; glycerol kinase - Deinococcus radiodurans (strain R1); E=1e-169 pir:C72254; glycerol kinase - Thermotoga maritima (strain MSB8); E=1e-155 swissprot:Q9X1E4; GLK2_THEMA GLYCEROL KINASE 2 (ATP:GLYCEROL; E=1e-155 COG: DR1928; COG0554 Glycerol kinase; E=1e-170 PFAM: PF00370; FGGY family of carbohydrate kinases; E=3.8e-107 PF02782; FGGY family of carbohydrate kinases; E=6.7e-83 NP_865708.1 PMID: 7821823 best DB hits: BLAST: pir:C75448; glycerol-3-phosphate dehydrogenase - Deinococcus; E=1e-112 pir:C70130; glycerol-3-phosphate dehydrogenase, anaerobic (glpA); E=4e-83 gb:AAF02807.1; AC009400_3 (AC009400) glycerol-3-phosphate; E=2e-82 COG: DR1019; COG0578 Glycerol-3-phosphate dehydrogenase; E=1e-113 PFAM: PF02737; 3-hydroxyacyl-CoA dehydrogenase; E=0.61 PF00070; Pyridine nucleotide-disulphide; E=0.036 PF02032; Phytoene dehydrogenase related; E=0.11 NP_865709.1 PMID: 11259647 NP_865711.1 PMID: 3110742 best DB hits: BLAST: pir:D75045; 3-isopropylmalate dehydrogenase (leub) PAB2424 -; E=2e-52 swissprot:O66607; LEU3_AQUAE 3-ISOPROPYLMALATE DEHYDROGENASE; E=6e-51 swissprot:Q9WZ26; LEU3_THEMA 3-ISOPROPYLMALATE DEHYDROGENASE; E=2e-49 COG: PAB2424; COG0473 Isocitrate/isopropylmalate dehydrogenase; E=2e-53 PFAM: PF00180; Isocitrate and isopropylmalate dehyd; E=6.3e-108 PF02376; CUT domain; E=0.32 NP_865712.1 PMID: 10762278 PMID: 7704254 best DB hits: BLAST: swissprot:P42237; GUDP_BACSU PROBABLE GLUCARATE TRANSPORTER; E=2e-33 swissprot:Q46916; GUDP_ECOLI PROBABLE GLUCARATE TRANSPORTER; E=2e-33 gb:AAG57903.1; AE005507_4 (AE005507) transport protein; E=4e-33 COG: BS_ycbE; COG0477 Permeases of the major facilitator superfamily; E=2e-34 PA1569; COG2271 Sugar phosphate permease; E=7e-12 AF0907; COG0477 Permeases of the major facilitator superfamily; E=1e-11 NP_865713.1 PMID: 10484179 best DB hits: BLAST: ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=3e-19 swissprot:O05389; YRBE_BACSU HYPOTHETICAL 37.8 KDA PROTEIN IN; E=2e-17 pir:G72391; conserved hypothetical protein - Thermotoga maritima; E=9e-15 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=3e-20 PFAM: PF01408; Oxidoreductase, NAD-bi; E=1.5e-26 NP_865714.1 PMID: 9371463 best DB hits: BLAST: pir:B69206; conserved hypothetical protein MTH796 - Methanobacterium; E=1e-16 pir:S75497; hypothetical protein slr2121 - Synechocystis sp. (strain; E=6e-16 pir:D75064; hypothetical protein PAB0997 - Pyrococcus abyssi (strain; E=3e-12 COG: MTH796; COG1878 Uncharacterized ACR, predicted metal-dependent; E=1e-17 NP_865716.1 PMID: 8905231 best DB hits: BLAST: pir:S75596; hypothetical protein slr1342 - Synechocystis sp. (strain; E=2e-54 gb:AAF25989.1; AC013354_8 (AC013354) F15H18.21 [Arabidopsis; E=4e-54 gb:AAF78379.1; AC069551_12 (AC069551) T10O22.24 [Arabidopsis; E=1e-52 COG: slr1342; COG3395 Uncharacterized protein; E=2e-55 NP_865717.1 PMID: 10484179 best DB hits: BLAST: swissprot:P54540; YQJC_BACSU HYPOTHETICAL 15.7 KD PROTEIN IN; E=1e-15 ddbj:BAB05187.1; (AP001512) BH1468~unknown conserved protein; E=4e-15 pir:A71452; glyoxalase I related protein PH0272 [similarity] -; E=2e-13 COG: BS_yqjC; COG0346 Lactoylglutathione lyase; E=9e-17 PFAM: PF00903; Glyoxalase/Bleomycin resistance pr; E=3.7e-09 NP_865720.1 PMID: 10564511 best DB hits: BLAST: gb:AAD47812.1; (AF163841) histidine protein kinase; E=7e-40 pir:D82244; sensory box sensor histidine kinase VC1084 [imported] -; E=2e-38 pir:F83324; probable two-component sensor PA2571 [imported] -; E=2e-35 COG: VC1084; COG0642 Sensory transduction histidine kinases; E=2e-39 slr1759_2; COG2202 PAS/PAC domain; E=1e-18 BS_ykrQ_3; COG0642 Sensory transduction histidine kinases; E=1e-18 PFAM: PF00989; PAS domain; E=0.0067 PF00785; PAC motif; E=3.7e-09 PF00989; PAS domain; E=0.17 NP_865722.1 PMID: 10952301 best DB hits: BLAST: pir:F82244; response regulator VC1086 [imported] - Vibrio cholerae; E=2e-13 ddbj:BAA14000.1; (D89625) adenylate cyclase [Anabaena sp.]; E=1e-12 pir:G82244; response regulator VC1087 [imported] - Vibrio cholerae; E=1e-11 COG: VC1087_1; COG0784 CheY-like receiver domains; E=1e-12 PA2881; COG2204 AAA superfamily ATPases with N-terminal receiver; E=2e-10 Rv0981; COG0745 Response regulators consisting of a CheY-like; E=5e-09 PFAM: PF00072; Response regulator receiver doma; E=5.1e-17 NP_865724.1 PMID: 9767592 PMID: 10567266 best DB hits: BLAST: swissprot:P22040; Y415_SYNY3 HYPOTHETICAL ABC TRANSPORTER; E=3e-49 gb:AAC36155.1; (AF003632) PilH [Myxococcus xanthus]; E=2e-47 pir:H75288; ABC transporter ATP-binding protein - Deinococcus; E=5e-47 COG: sll0415; COG1131 ABC-type multidrug transport system, ATPase; E=2e-50 BH1054_2; COG0842 Permease component of an ABC-transporter; E=1e-33 PH0820; COG1131 ABC-type multidrug transport system, ATPase; E=3e-33 PFAM: PF02223; Thymidylate kinase; E=0.7 PF00005; ABC transporter; E=1.1e-46 NP_865727.1 PMID: 11157922 PMID: 10360571 best DB hits: BLAST: pir:C72228; sensor histidine kinase HpkA - Thermotoga maritima; E=1e-16 swissprot:P23545; PHOR_BACSU ALKALINE PHOSPHATASE SYNTHESIS SENSOR; E=2e-16 gb:AAF70313.1; AF260326_2 (AF260326) SrrB [Staphylococcus aureus]; E=3e-16 COG: TM1654_2; COG0642 Sensory transduction histidine kinases; E=1e-17 PFAM: PF00512; His Kinase A (phosphoacceptor) doma; E=1.8e-16 PF02518; Histidine kinase-, DNA gyrase B-, p; E=2e-27 NP_865728.1 PMID: 9252185 best DB hits: BLAST: pir:B64528; conserved hypothetical ATP-binding protein HP0066 -; E=2e-31 pir:A71979; hypothetical protein jhp0061 - Helicobacter pylori (strain; E=6e-31 ddbj:BAA33499.1; (AB003309) cdrA [Helicobacter pylori]; E=9e-29 COG: HP0066; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related; E=2e-32 PFAM: PF00005; ABC transporter; E=0.0065 PF00004; ATPase associated with; E=0.24 PF01580; FtsK/SpoIIIE family; E=9.4e-24 NP_865737.1 PMID: 8843436 best DB hits: BLAST: embl:CAB58305.1; (AL121854) hypothetical protein SCJ33.06c; E=1e-07 gb:AAF87158.1; AC002423_23 (AC002423) T23E23.6 [Arabidopsis; E=7e-05 gb:AAF87138.1; AC002423_3 (AC002423) T23E23.5 [Arabidopsis; E=5e-04 PFAM: PF01436; NHL repeat; E=0.094 NP_865738.1 PMID: 2647728 best DB hits: BLAST: pir:T08967; hypothetical protein F19B15.150 - Arabidopsis thaliana; E=3e-78 swissprot:O34948; YKWC_BACSU HYPOTHETICAL 30.7 KD PROTEIN IN; E=8e-71 gb:AAK06313.1; AE006450_6 (AE006450) 3-hydroxyisobutyrate; E=6e-70 COG: BS_ykwC; COG2084 3-hydroxyisobutyrate dehydrogenase and related; E=7e-72 NP_865739.1 PMID: 10352233 PMID: 8636017 best DB hits: BLAST: pir:A83203; alginate o-acetyltransferase AlgI PA3548 [imported] -; E=3e-71 gb:AAB09781.1; (U50202) AlgI [Pseudomonas aeruginosa]; E=1e-70 gb:AAC04568.1; (AF027499) AlgI [Azotobacter vinelandii]; E=3e-69 COG: PA3548; COG1696 Predicted membrane protein involved in D-alanine; E=3e-72 NP_865741.1 PMID: 2830250 best DB hits: BLAST: pir:F71678; CDPdiacylglycerol--serine O-phosphatidyltransferase (EC; E=1e-12 pir:G82804; phosphatidyltransferase XF0442 [imported] - Xylella; E=2e-12 pir:T47268; phosphatidylserine synthase [imported] - Helicobacter; E=3e-12 COG: RP242; COG1183 Phosphatidylserine synthase; E=1e-13 Rv2612c; COG0558 Phosphatidylglycerophosphate synthase; E=1e-05 AF2044; COG1183 Phosphatidylserine synthase; E=1e-05 PFAM: PF01066; CDP-alcohol phosphatidyltrans; E=1.1e-08 NP_865742.2 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine NP_865743.1 PMID: 2187483 best DB hits: BLAST: pir:T51421; L-aspartate oxidase-like protein - Arabidopsis thaliana; E=3e-91 pir:T36393; L-aspartate oxidase - Streptomyces coelicolor -----; E=5e-90 swissprot:Q51363; NADB_PSEAE L-ASPARTATE OXIDASE (QUINOLINATE; E=2e-86 COG: PA0761; COG0029 Aspartate oxidase; E=1e-87 Rv1552; COG1053 Succinate dehydrogenase/fumarate reductase,; E=4e-69 XF1924; COG0029 Aspartate oxidase; E=1e-68 PFAM: PF01134; Glucose inhibited division pro; E=0.2 PF01494; FAD binding domain; E=0.011 PF00732; GMC oxidoreductases; E=0.12 NP_865744.1 PMID: 1697017 PMID: 3017428 best DB hits: BLAST: swissprot:P05695; PORP_PSEAE PORIN P PRECURSOR (OUTER MEMBRANE; E=4e-16 pir:S11793; porin P precursor, phosphate-specific - Pseudomonas; E=5e-16 pir:D82740; polyphosphate-selective porin O XF0975 [imported] -; E=1e-11 NP_865746.1 PMID: 10780382 best DB hits: BLAST: ddbj:BAB16192.1; (AP002086) hypothetical protein [Agrobacterium; E=8e-23 embl:CAC14575.1; (AJ295059) arylesterase [Sinorhizobium; E=2e-20 gb:AAD02335.1; (AF044683) arylesterase [Agrobacterium; E=3e-18 NP_865753.1 PMID: 9168618 best DB hits: PFAM: PF00903; Glyoxalase/Bleomycin resistance pr; E=5.3e-10 NP_865755.1 PMID: 9524216 PMID: 95147689 best DB hits: BLAST: gb:AAC46184.1; (AF026511) dipeptidyl peptidase IV [Porphyromonas; E=2e-59 ddbj:BAA28265.1; (AB008194) DPP IV [Porphyromonas gingivalis]; E=5e-59 pir:S66261; X-Pro dipeptidyl-peptidase (EC 3.4.14.11) -; E=5e-48 COG: YHR028c; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; E=8e-26 PFAM: PF00930; Dipeptidyl peptidase IV (DPP IV); E=7.9e-29 PF00326; Prolyl oligopeptidase; E=0.39 NP_865760.1 PMID: 10336424 best DB hits: BLAST: pir:E64903; arylsulfatase homolog b1498 - Escherichia coli -----; E=1e-26 swissprot:P77318; YDEN_ECOLI SULFATASE YDEN PRECURSOR; E=1e-26 gb:AAF30402.1; AF109924_1 (AF109924) sulfatase 1 precursor [Helix; E=1e-26 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=1e-27 PFAM: PF00884; Sulfatase; E=1.2e-31 NP_865762.1 PMID: 10952301 best DB hits: BLAST: pir:D82278; hypothetical protein VC0802 [imported] - Vibrio cholerae; E=2e-24 pir:C83100; hypothetical protein PA4364 [imported] - Pseudomonas; E=3e-15 NP_865767.1 PMID: 10567266 best DB hits: BLAST: ddbj:BAB04222.1; (AP001508) BH0503~unknown conserved protein in; E=1e-17 pir:G75479; hypothetical protein - Deinococcus radiodurans (strain; E=1e-15 pir:E82435; hypothetical protein VCA0631 [imported] - Vibrio; E=1e-11 COG: BH0503; COG0454 Histone acetyltransferase HPA2 and related; E=1e-18 PFAM: PF00583; Acetyltransferase (GNAT) family; E=3.9e-07 NP_865769.1 best DB hits: BLAST: pir:F75494; hypothetical protein - Deinococcus radiodurans (strain; E=0.55 PFAM: PF01260; AP endonuclease 1; E=0.41 NP_865772.1 PMID: 10762236 best DB hits: BLAST: gb:AAD38020.1; AF148127_1 (AF148127) transposase [Porphyromonas; E=8e-13 ddbj:BAA83477.1; (AB009361) transposase [Porphyromonas; E=1e-12 ddbj:BAA92234.1; (AB031551) transposase [Bacillus subtilis]; E=3e-10 COG: BH0691; COG3385 Predicted transposase; E=2e-10 PFAM: PF01609; Transposase (IS4 family); E=6.2e-08 NP_865774.1 PMID: 7910580 PMID: 1572648 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=3e-38 embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=3e-35 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=3e-35 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=8e-29 PFAM: PF00884; Sulfatase; E=3.2e-49 NP_865775.1 PMID: 2476654 PMID: 2303452 PMID: 89384447 best DB hits: BLAST: gb:AAF04318.1; (AF065159) arylsulfatase [Bradyrhizobium; E=2e-50 gb:AAG58993.1; AE005611_3 (AE005611) arylsulfatase [Escherichia; E=4e-32 swissprot:P25549; ASLA_ECOLI ARYLSULFATASE (ARYL-SULFATE; E=6e-32 COG: aslA; COG3119 Arylsulfatase A and related enzymes; E=5e-33 PFAM: PF00884; Sulfatase; E=6.1e-68 NP_865780.1 PMID: 10607910 best DB hits: BLAST: ddbj:BAB01794.1; (AB026654) contains similarity to uridylate; E=9e-63 swissprot:P74457; PYRH_SYNY3 URIDYLATE KINASE (UK) (URIDINE; E=2e-61 swissprot:O66929; PYRH_AQUAE URIDYLATE KINASE (UK) (URIDINE; E=7e-61 COG: sll0144; COG0528 Uridylate kinase; E=2e-62 PFAM: PF00696; Amino acid kinase; E=1.1e-50 NP_865781.1 PMID: 8183897 PMID: 8755892 best DB hits: BLAST: ddbj:BAB06143.1; (AP001515) ribosome recycling factor [Bacillus; E=1e-37 swissprot:P81101; RRF_BACSU RIBOSOME RECYCLING FACTOR (RIBOSOME; E=5e-36 swissprot:Q10794; RRF_MYCTU RIBOSOME RECYCLING FACTOR (RIBOSOME; E=5e-35 COG: BH2424; COG0233 Ribosome recycling factor; E=1e-38 PFAM: PF01765; Ribosome recycling factor; E=2.5e-74 NP_865784.1 PMID: 6296787 best DB hits: BLAST: swissprot:Q04708; PROC_PEA PYRROLINE-5-CARBOXYLATE REDUCTASE; E=4e-49 swissprot:P54904; PROC_ARATH PYRROLINE-5-CARBOXYLATE REDUCTASE; E=4e-49 swissprot:P17817; PROC_SOYBN PYRROLINE-5-CARBOXYLATE REDUCTASE; E=8e-48 COG: slr0661; COG0345 Pyrroline-5-carboxylate reductase; E=3e-45 PFAM: PF01089; Delta 1-pyrroline-5-carboxylate redu; E=6.5e-101 NP_865785.1 PMID: 11337471 best DB hits: BLAST: pir:T36717; probable serinethreonine protein kinase - Streptomyces; E=1e-22 gb:AAK05985.1; AE006418_5 (AE006418) serinethreonine protein; E=1e-22 embl:CAA10713.1; (AJ132604) hypothetical protein [Lactococcus; E=2e-22 COG: BH2504_1; COG0515 Serine/threonine protein kinases; E=1e-21 PFAM: PF00069; Protein kinase domain; E=3.4e-39 NP_865786.1 PMID: 9125538 PMID: 1905979 best DB hits: BLAST: gb:AAB67969.1; (U77368) internalin [Listeria monocytogenes]; E=1e-28 embl:CAA07457.1; (AJ007319) internalin H [Listeria monocytogenes]; E=1e-28 embl:CAC20635.1; (AJ012385) internalin D [Listeria monocytogenes]; E=1e-28 PFAM: PF00560; Leucine Rich Repeat; E=0.24 NP_865787.1 PMID: 7909543 best DB hits: BLAST: swissprot:P42673; PCP_PSEFL PYRROLIDONE-CARBOXYLATE PEPTIDASE; E=3e-18 swissprot:O73944; PCP_PYRFU PYRROLIDONE-CARBOXYLATE PEPTIDASE; E=3e-18 pir:D75057; pyroglutamyl-peptidase I (EC 3.4.19.3) PAB1419; E=3e-17 COG: PAB1419; COG2039 Pyrrolidone-carboxylate peptidase (N-terminal; E=3e-18 PFAM: PF01470; Pyroglutamyl peptidase; E=1.9e-15 NP_865792.1 PMID: 8905231 best DB hits: BLAST: pir:S76180; hypothetical protein - Synechocystis sp. (strain PCC; E=1e-41 gb:AAD29263.1; AF107093_8 (AF107093) unknown [Rhodobacter; E=7e-32 pir:B70799; hypothetical protein Rv3745c - Mycobacterium; E=6e-12 NP_865793.1 PMID: 10567266 best DB hits: BLAST: pir:C75256; conserved hypothetical protein - Deinococcus radiodurans; E=3e-46 gb:AAG48795.1; AF332432_1 (AF332432) unknown protein [Arabidopsis; E=3e-40 pir:A82330; conserved hypothetical protein VC0373 [imported] -; E=4e-38 COG: DR2598; COG0432 Uncharacterized ACR; E=3e-47 PFAM: PF01894; Uncharacterised protein family UPF00; E=5.6e-43 NP_865795.1 PMID: 1317840 best DB hits: BLAST: pir:C75313; probable proteinase - Deinococcus radiodurans (strain; E=1e-136 pir:D69102; collagenase - Methanobacterium thermoautotrophicum; E=2e-58 pir:F64895; hypothetical protein b1435 - Escherichia coli -----; E=9e-53 COG: DR2130; COG0826 Protease related to collagenase; E=1e-137 PFAM: PF01045; EIAV glycoprotein, gp45; E=0.52 PF01136; Peptidase U32; E=1.9e-50 PF00452; Apoptosis regulator proteins, B; E=0.0056 NP_865796.1 PMID: 2119891 best DB hits: BLAST: embl:CAB77286.1; (AL160312) DNA polymerase related; E=9e-39 gb:AAD56917.1; AF180145_9 (AF180145) hypothetical protein; E=1e-30 embl:CAB56297.1; (AJ249385) hypothetical protein [Pseudomonas; E=3e-30 COG: aq_1693; COG1573 Uracil-DNA glycosylase; E=5e-21 NP_865799.1 PMID: 11481431 best DB hits: BLAST: pir:C75617; probable oxidoreductase - Deinococcus radiodurans; E=0.004 pir:F75417; L-sorbosone dehydrogenase - Deinococcus radiodurans; E=0.14 pir:S31940; starch-degrading enzyme - Clostridium acetobutylicum; E=0.67 COG: DRA0203; COG2133 Glucose/sorbosone dehydrogenases; E=4e-04 PFAM: PF00034; Cytochrome c; E=0.049 NP_865802.1 PMID: 9639930 best DB hits: BLAST: swissprot:P46218; Y31K_SULAC HYPOTHETICAL 31.5 KD PROTEIN -----; E=6e-06 swissprot:O34940; YVRE_BACSU HYPOTHETICAL 33.2 KD PROTEIN IN; E=7e-05 ddbj:BAA13046.1; (D86217) regucalcin [Mus musculus]; E=0.76 COG: BS_yvrE; COG3386 Uncharacterized protein; E=7e-06 NP_865808.1 PMID: 8331075 PMID: 10348868 PMID: 8921895 best DB hits: BLAST: pir:G83274; probable tolQ-type transport protein PA2983 [imported] -; E=7e-13 pir:H71686; tolQ protein (tolQ) RP309 - Rickettsia prowazekii; E=1e-10 pir:G82187; biopolymer transport protein ExbB-related protein VC1547; E=1e-10 COG: PA2983; COG0811 Biopolymer transport proteins; E=7e-14 PFAM: PF01618; MotA/TolQ/ExbB proton channel famil; E=4e-28 NP_865809.1 PMID: 11743194 best DB hits: BLAST: swissprot:P18784; EXBD_ECOLI BIOPOLYMER TRANSPORT EXBD PROTEIN; E=0.010 swissprot:Q05606; EXBD_PSEPU BIOPOLYMER TRANSPORT EXBD PROTEIN; E=0.35 embl:CAB50919.1; (AJ243354) hypothetical protein [Pseudomonas; E=0.35 COG: exbD; COG0848 Biopolymer transport protein; E=0.001 NP_865810.1 best DB hits: BLAST: swissprot:Q9ZHV9; EXD2_VIBCH BIOPOLYMER TRANSPORT EXBD2 PROTEIN; E=0.57 PFAM: PF02472; Biopolymer transport protein ExbD/To; E=0.0017 NP_865812.1 PMID: 2656657 PMID: 6283099 PMID: 2404959 best DB hits: BLAST: pir:B82835; anthranilate synthase component II XF0211 [imported] -; E=4e-40 swissprot:P06193; PABA_SALTY PARA-AMINOBENZOATE SYNTHASE GLUTAMINE; E=4e-39 pir:NNPS2P; anthranilate synthase (EC 4.1.3.27) component II; E=6e-39 COG: XF0211; COG0512 Anthranilate/para-aminobenzoate synthases component; E=3e-41 TM0141_1; COG0512 Anthranilate/para-aminobenzoate synthases; E=7e-37 DR1766; COG0512 Anthranilate/para-aminobenzoate synthases component; E=3e-36 PFAM: PF00117; Glutamine amidotransferase clas; E=0.00015 NP_865813.1 best DB hits: PFAM: PF01522; Polysaccharide deacetylase; E=0.37 NP_865814.1 best DB hits: BLAST: gb:AAC27019.1; (AF032114) unknown [Methylobacterium extorquens]; E=2e-16 pir:B75078; hypothetical protein PAB1694 - Pyrococcus abyssi (strain; E=5e-16 pir:F71066; hypothetical protein PH1228 - Pyrococcus horikoshii; E=2e-15 COG: PAB1694; COG1907 Predicted archaeal sugar kinases; E=5e-17 NP_865815.1 PMID: 9321663 PMID: 8266080 PMID: 8265370 best DB hits: BLAST: gb:AAB02738.1; (U58864) CspR [Bacillus subtilis]; E=2e-29 swissprot:P32813; YGL3_BACST HYPOTHETICAL 18.2 KD PROTEIN IN GLDA; E=4e-29 pir:G69608; rRNA methylase homolog cspR - Bacillus subtilis -----; E=6e-29 COG: BS_cspR; COG0219 Predicted rRNA methylase (SpoU class); E=5e-30 slr1673; COG0566 rRNA methylases; E=6e-07 PFAM: PF00588; SpoU rRNA Methylase; E=8e-34 NP_865816.1 best DB hits: BLAST: embl:CAB94634.1; (AL359215) secreted glycosyl hydrolase.; E=9e-10 pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=5e-08 embl:CAB45032.1; (AL078635) large multi-functional; E=0.001 NP_865817.1 best DB hits: BLAST: pir:G83466; hypothetical protein PA1424 [imported] - Pseudomonas; E=1e-20 pir:C82132; conserved hypothetical protein VC1980 [imported] -; E=3e-18 gb:AAF54040.1; (AE003672) CG10050 gene product [Drosophila; E=3e-12 COG: PA1424; COG3148 Uncharacterized ACR; E=1e-21 NP_865819.1 PMID: 10831436 best DB hits: BLAST: gb:AAF76874.1; (AF246145) unknown [uncultured soil microbe; E=3e-08 NP_865820.1 best DB hits: BLAST: pir:T36423; probable large, multifunctional secreted protein -; E=1e-59 embl:CAB45032.1; (AL078635) large multi-functional; E=4e-53 NP_865821.1 PMID: 9923682 best DB hits: BLAST: pir:B71970; cytochrome oxidase (cbb3-type) - Helicobacter pylori; E=2e-04 pir:C64538; cytochrome-c oxidase (EC 1.9.3.1) chain fixP -; E=0.003 ddbj:BAA33529.1; (AB018105) cb-type cytochrome c oxidase subunit; E=0.009 COG: jhp0135; COG2010 Cytochrome c, mono- and diheme variants; E=2e-05 PFAM: PF00034; Cytochrome c; E=0.00073 NP_865822.1 PMID: 2303452 best DB hits: BLAST: pir:F70837; probable sulfatase (EC 3.1.6.-) atsG - Mycobacterium; E=8e-35 gb:AAF55607.1; (AE003724) CG14291 gene product [Drosophila; E=9e-27 prf:2204388A; sulphamidase [Homo sapiens]; E=3e-25 COG: Rv0296c; COG3119 Arylsulfatase A and related enzymes; E=8e-36 PA0924; COG3083 Predicted hydrolase of alkaline phosphatase; E=3e-05 Rv0711; COG3119 Arylsulfatase A and related enzymes; E=5e-04 PFAM: PF00884; Sulfatase; E=2.8e-22 NP_865824.1 PMID: 10567266 best DB hits: BLAST: pir:E75594; conserved hypothetical protein - Deinococcus radiodurans; E=7e-11 pir:B83042; hypothetical protein PA4830 [imported] - Pseudomonas; E=6e-08 ddbj:BAB06321.1; (AP001516) BH2602~unknown conserved protein in; E=7e-07 COG: DRA0017; COG2050 Uncharacterized protein PaaI, possibly involved in; E=7e-12 PFAM: PF02584; Uncharacterized protein PaaI, COG205; E=1.4e-12 NP_865825.1 PMID: 7690140 PMID: 7816544 best DB hits: BLAST: ddbj:BAB07103.1; (AP001518) sodiumsulfate symporter [Bacillus; E=5e-86 swissprot:Q39593; SAC1_CHLRE SULFUR DEPRIVATION RESPONSE; E=1e-75 gb:AAG20642.1; (AE005133) arsenite transport protein; ArsB; E=4e-62 COG: BH3384; COG0471 Di- and tricarboxylate transporters; E=5e-87 PAB1107; COG1055 Na+/H+ antiporter NhaD and related arsenite; E=4e-06 jhp0200; COG0471 Di- and tricarboxylate transporters; E=9e-05 PFAM: PF02080; Potassium channel; E=4.1e-08 NP_865829.1 PMID: 8031825 best DB hits: BLAST: gb:AAG20007.1; (AE005081) pantothenate permease; PanF; E=2e-20 pir:C69115; sodiumproline symporter (proline permease) -; E=3e-11 pir:B69833; metabolite permease homolog yhjB - Bacillus subtilis; E=7e-11 COG: VNG1785G; COG0591 Na+/proline, Na+/panthothenate symporters and; E=2e-21 panF; COG0591 Na+/proline, Na+/panthothenate symporters and related; E=3e-04 NMB0402; COG0591 Na+/proline, Na+/panthothenate symporters and; E=7e-04 PFAM: PF00474; Sodium:solute symporter family; E=0.11 NP_865838.1 PMID: 9163424 best DB hits: BLAST: swissprot:P55482; Y4HR_RHISN HYPOTHETICAL 8.8 KD PROTEIN Y4HR; E=4e-15 NP_865849.1 PMID: 1646375 best DB hits: BLAST: prf:2115270C; transposase [Weeksella zoohelcum]; E=1e-33 swissprot:P55631; Y4QJ_RHISN TRANSPOSASE Y4QJ -----; E=1e-31 swissprot:P24607; T801_PSESH TRANSPOSASE FOR INSERTION SEQUENCE; E=4e-10 NP_865850.1 PMID: 8195081 PMID: 2821509 best DB hits: BLAST: swissprot:P55632; Y4QK_RHISN INTEGRASERECOMBINASE Y4QK; E=4e-39 swissprot:P55429; Y4EF_RHISN INTEGRASERECOMBINASE Y4EF; E=2e-32 prf:2115270D; integrase [Weeksella zoohelcum]; E=7e-23 COG: PAB0255; COG0582 Integrase; E=1e-20 PFAM: PF02899; Phage integrase, N-terminal S; E=0.3 PF00589; Phage integrase; E=8e-31 NP_865853.1 best DB hits: BLAST: embl:CAA97268.1; (Z73025) ORF YGR240c [Saccharomyces cerevisiae]; E=0.83 NP_865856.1 best DB hits: BLAST: embl:CAB45032.1; (AL078635) large multi-functional protein; E=1e-22 pir:T36423; probable large, multifunctional secreted protein -; E=4e-18 PFAM: PF00034; Cytochrome c; E=0.24 PF01436; NHL repeat; E=0.25 NP_865857.1 PMID: 12093901 best DB hits: BLAST: ddbj:BAB05241.1; (AP001512) thioredoxin (thiol:disulfide; E=0.019 ddbj:BAB05296.1; (AP001512) cytochrome c biogenesis (thioredoxin); E=0.12 pir:E69891; cytochrome c biogenesis protein CycX homolog homolog; E=0.15 COG: BH1522; COG0526 Thiol-disulfide isomerase and thioredoxins; E=0.002 NP_865858.1 PMID: 10322435 PMID: 9862990 best DB hits: BLAST: pir:B83150; probable ATP-dependent helicase PA3961 [imported] -; E=1e-113 gb:AAC45544.1; (U49051) HelO [Sinorhizobium meliloti]; E=1e-110 pir:E82708; ATP-dependent helicase XF1229 [imported] - Xylella; E=1e-107 COG: PA3961; COG1643 HrpA-like helicases; E=1e-114 PFAM: PF00270; DEAD/DEAH box helicase; E=0.19 PF00271; Helicase conserved C-terminal; E=3.7e-12 NP_865859.1 PMID: 10846217 best DB hits: BLAST: embl:CAB55348.1; (AJ238716) acetyl xylan esterase [Ruminococcus; E=5e-07 NP_865860.1 best DB hits: PFAM: PF00054; Laminin G domain; E=0.012 NP_865861.1 PMID: 10950929 best DB hits: BLAST: pir:F70837; probable sulfatase (EC 3.1.6.-) atsG - Mycobacterium; E=3e-26 gb:AAG17207.1; AF217204_1 (AF217204) heparan sulfate sulfamidase; E=2e-20 gb:AAF55607.1; (AE003724) CG14291 gene product [Drosophila; E=5e-20 COG: Rv0296c; COG3119 Arylsulfatase A and related enzymes; E=3e-27 PA0924; COG3083 Predicted hydrolase of alkaline phosphatase; E=7e-05 Rv3299c; COG3119 Arylsulfatase A and related enzymes; E=7e-05 PFAM: PF00884; Sulfatase; E=2.5e-24 NP_865863.1 PMID: 8190066 best DB hits: BLAST: pir:S43880; esterase - Spirulina platensis ----- gb:; E=2e-09 pir:S75304; serine esterase - Synechocystis sp. (strain PCC 6803); E=1e-06 pir:F81704; serine esterase, probable TC0413 [imported] - Chlamydia; E=0.002 COG: sll1284; COG0400 Predicted esterase; E=1e-07 PFAM: PF02230; Phospholipase/Carboxylesterase; E=0.27 NP_865865.1 PMID: 3139632 PMID: 7664125 best DB hits: BLAST: pir:S58235; endo-1,4-beta-xylanase (EC 3.2.1.8) 1 precursor -; E=1e-11 swissprot:P10478; XYNZ_CLOTM ENDO-1,4-BETA-XYLANASE Z PRECURSOR; E=1e-10 embl:CAB93667.1; (AJ272430) endoxylanase [Ruminococcus; E=1e-09 COG: yieL; COG2382 Enterochelin esterase and related enzymes; E=4e-05 DR0779_2; COG2819 Predicted hydrolase of the alpha/beta superfamily; E=0.001 NP_865867.1 PMID: 10952301 best DB hits: BLAST: pir:F82453; conserved hypothetical protein VCA0489 [imported] -; E=5e-06 pir:F82462; conserved hypothetical protein VCA0423 [imported] -; E=0.002 NP_865868.1 PMID: 10496921 PMID: 3291115 best DB hits: BLAST: pir:C70584; probable serine-threonine protein kinase - Mycobacterium; E=2e-36 embl:CAB62227.1; (AJ250200) serinethreonine protein; E=2e-36 ddbj:BAB06223.1; (AP001515) serinethreonine protein kinase; E=6e-36 COG: Rv0931c_1; COG0515 Serine/threonine protein kinases; E=2e-37 PFAM: PF00069; Protein kinase domain; E=6.8e-40 NP_865871.1 best DB hits: PFAM: PF00703; Glycosyl hydrolases family 2,; E=0.0075 NP_865873.1 best DB hits: BLAST: pir:F72591; probable sugar phosphate transferase APE1202 - Aeropyrum; E=5e-11 pir:E71207; probable glucose-1-phosphate thymidylyltransferase -; E=3e-10 pir:G75020; glucose-1-phosphate thymidylyltransferase (grad-2); E=5e-10 COG: APE1202; COG1208 Nucleoside-diphosphate-sugar pyrophosphorylases; E=5e-12 TM1629; COG1207 N-acetylglucosamine-1-phosphate uridyltransferase; E=4e-04 MJ1101; COG1208 Nucleoside-diphosphate-sugar pyrophosphorylases; E=0.006 NP_865877.1 PMID: 11759840 best DB hits: BLAST: embl:CAA82877.1; (Z29987) VLA-2 homologue [Mus musculus]; E=0.40 PFAM: PF00092; von Willebrand factor type A do; E=0.33 NP_865879.1 best DB hits: PFAM: PF00499; NADH-ubiquinone/plastoquinone oxi; E=0.23 NP_865881.1 PMID: 8817497 PMID: 8439290 best DB hits: BLAST: pir:E82546; pre-pilin leader peptidase XF2537 [imported] - Xylella; E=5e-06 swissprot:P36642; LEP4_PSEPU TYPE 4 PREPILIN-LIKE PROTEINS LEADER; E=1e-05 gb:AAC17878.1; (AF062531) signal peptidase [Pseudomonas putida; E=1e-04 COG: XF2537; COG1989 Signal peptidase, cleaves prepilin-like proteins; E=5e-07 PFAM: PF01478; Type III leader peptidase famil; E=3.7e-05 NP_865883.1 PMID: 8588735 PMID: 7890743 best DB hits: BLAST: pir:S57490; molybdopterin cofactor synthesis protein - Arthrobacter; E=2e-74 swissprot:Q44118; MOAA_ARTNI PROBABLE MOLYBDOPTERIN COFACTOR; E=2e-74 swissprot:Q39055; CNX2_ARATH MOLYBDOPTERIN BIOSYNTHESIS CNX2; E=4e-64 COG: Rv0869c; COG2896 Molybdenum cofactor biosynthesis enzyme; E=5e-59 PFAM: PF01444; moaA / nifB / pqqE family; E=2.5e-62 NP_865884.1 best DB hits: BLAST: pir:H83105; conserved hypothetical protein PA4319 [imported] -; E=3e-16 pir:S75694; hypothetical protein slr1478 - Synechocystis sp. (strain; E=2e-09 ddbj:BAB04452.1; (AP001509) BH0733~unknown conserved protein in; E=3e-05 COG: PA4319; COG1300 Uncharacterized membrane protein; E=2e-17 PFAM: PF01944; Integral membrane protein DUF95; E=0.69 NP_865886.1 best DB hits: BLAST: ddbj:BAB04448.1; (AP001509) BH0729~unknown conserved protein in; E=0.30 NP_865888.1 PMID: 8997703 PMID: 1657871 PMID: 9163922 best DB hits: BLAST: pir:C83106; conserved hypothetical protein PA4322 [imported] -; E=2e-79 pir:E70792; probable regulatory protein - Mycobacterium tuberculosis; E=7e-74 embl:CAB90929.1; (AL355774) regulatory protein; E=2e-69 COG: PA4322; COG0714 MoxR-like ATPases; E=2e-80 PFAM: PF00004; ATPase associated with va; E=0.0093 PF01078; Magnesium chelatase, subunit Chl; E=0.0014 NP_865891.1 PMID: 11407917 best DB hits: BLAST: gb:AAB36936.1; (U77780) unknown [Chlorobium limicola]; E=6e-11 gb:AAD42964.1; AF144883_1 (AF144883) partition protein; E=7e-08 gb:AAD21669.1; (AF133830) pVS1 partitioning protein [Shuttle; E=8e-08 COG: DR0013; COG1192 ATPases involved in chromosome partitioning; E=1e-06 PH0612; COG0455 ATPases involved in chromosome partitioning; E=2e-04 aq_aa35; COG1192 ATPases involved in chromosome partitioning; E=2e-04 PFAM: PF02374; Anion-transporting ATPase; E=2.9e-06 PF01583; Adenylylsulfate kinase; E=0.00057 PF00991; ParA family ATPase; E=0.14 NP_865893.1 PMID: 8041625 best DB hits: BLAST: gb:AAG55028.1; AE005248_9 (AE005248) receptor; E=4e-61 gb:AAG54539.1; AE005200_1 (AE005200) Z0271 gene product; E=1e-60 swissprot:P28917; YDCC_ECOLI H REPEAT-ASSOCIATED PROTEIN IN; E=1e-60 PFAM: PF01811; Transposase; E=1.3e-65 NP_865896.1 best DB hits: BLAST: gb:AAB91577.2; (AF242881) ymc [Agrobacterium tumefaciens]; E=1e-04 gb:AAF01192.1; AF179401_1 (AF179401) epoxidase; E=0.11 pir:D70028; conserved hypothetical protein yvaO - Bacillus subtilis; E=0.16 PFAM: PF01381; Helix-turn-helix; E=3.4e-10 NP_865897.1 best DB hits: PFAM: PF01658; Myo-inositol-1-phosphate synth; E=0.89 NP_865900.1 PMID: 741263 best DB hits: BLAST: swissprot:Q9X1P3; RADC_THEMA DNA REPAIR PROTEIN RADC HOMOLOG; E=6e-25 ddbj:BAB06751.1; (AP001517) DNA repair protein [Bacillus; E=3e-23 swissprot:Q02170; RADC_BACSU DNA REPAIR PROTEIN RADC HOMOLOG; E=2e-22 COG: TM1557; COG2003 DNA repair proteins; E=5e-26 NP_865903.1 PMID: 11214968 NP_865907.1 PMID: 2542093 best DB hits: BLAST: gb:AAG55028.1; AE005248_9 (AE005248) receptor; E=4e-61 gb:AAG54539.1; AE005200_1 (AE005200) Z0271 gene product; E=1e-60 swissprot:P28917; YDCC_ECOLI H REPEAT-ASSOCIATED PROTEIN IN; E=1e-60 PFAM: PF01811; Transposase; E=1.3e-65 NP_865909.1 best DB hits: BLAST: embl:CAC01558.1; (AL391039) conserved hypothetical protein; E=3e-27 gb:AAG19482.1; (AE005040) sulfite oxidase homolog; YuiH; E=3e-27 pir:A70013; sulfite oxidase homolog yuiH - Bacillus subtilis -----; E=6e-26 COG: VNG1084G; COG2041 Uncharacterized enzymes, related to nitrate; E=3e-28 sll1011_2; COG1357 Uncharacterized low-complexity proteins; E=1e-11 PA4692; COG2041 Uncharacterized enzymes, related to nitrate; E=2e-11 PFAM: PF00174; Oxidoreductase molybdopterin b; E=0.16 PF00805; Pentapeptide repeats (8 copies; E=3e-06 NP_865910.1 PMID: 3040663 PMID: 3260234 PMID: 2404938 best DB hits: BLAST: swissprot:P12287; BLAR_BACLI REGULATORY PROTEIN BLAR1 -----; E=2e-05 pir:I39942; penicillinase antirepressor penJ - Bacillus; E=5e-05 swissprot:P18357; BLAR_STAAU REGULATORY PROTEIN BLAR1 -----; E=3e-04 PFAM: PF01271; Granin (chromogranin or secretograni; E=0.87 NP_865911.1 PMID: 3096969 PMID: 3305074 PMID: 3260234 best DB hits: BLAST: swissprot:P06555; BLAI_BACLI PENICILLINASE REPRESSOR (REGULATORY; E=7e-10 pir:B28183; beta-lactamase repressor protein - Bacillus; E=8e-09 pir:S74550; hypothetical protein slr0240 - Synechocystis sp. (strain; E=2e-05 PFAM: PF00392; Bacterial regulatory proteins, gntR; E=0.082 NP_865913.1 best DB hits: BLAST: pir:S75246; hypothetical protein slr1023 - Synechocystis sp. (strain; E=1e-20 pir:G71082; probable mannose-1-phosphate guanylyl transferase -; E=0.65 NP_865914.1 best DB hits: BLAST: pir:T37061; probable secreted protein - Streptomyces coelicolor; E=5e-26 pir:T35483; hypothetical protein SC6C5.12c SC6C5.12c - Streptomyces; E=2e-17 swissprot:P75772; YBHP_ECOLI HYPOTHETICAL 28.8 KDA PROTEIN IN; E=3e-11 PFAM: PF00783; Inositol polyphosphate phosph; E=0.5 NP_865916.1 PMID: 99287316 best DB hits: BLAST: pir:C72377; hypothetical protein TM0440 - Thermotoga maritima; E=1e-22 NP_865917.1 PMID: 3622514 PMID: 1593644 best DB hits: BLAST: swissprot:P39400; YJJN_ECOLI HYPOTHETICAL ZINC-TYPE ALCOHOL; E=1e-51 gb:AAG59541.1; AE005667_5 (AE005667) oxidoreductase; E=9e-51 pir:F69852; L-iditol 2-dehydrogenase (EC 1.1.1.14) homolog yjmD -; E=1e-38 COG: yjjN; COG1063 Threonine dehydrogenase and related Zn-dependent; E=1e-52 PFAM: PF01494; FAD binding domain; E=0.28 PF00070; Pyridine nucleotide-disulphide; E=0.0008 PF00107; Zinc-binding dehydrogenases; E=1.3e-68 NP_865918.1 best DB hits: BLAST: embl:CAA53530.1; (X75926) ABC transporter [Mus musculus]; E=0.53 NP_865919.1 PMID: 8905231 best DB hits: BLAST: embl:CAA11074.1; (AJ223073) phosphate regulatory protein; E=3e-11 pir:B70152; response regulatory protein (rrp-1) homolog - Lyme; E=1e-10 gb:AAD30120.2; (AF135389) DNA binding response regulator RpaA; E=2e-10 COG: BB0419_1; COG0784 CheY-like receiver domains; E=1e-11 slr0115; COG0745 Response regulators consisting of a CheY-like; E=2e-10 slr1305_1; COG0784 CheY-like receiver domains; E=3e-09 PFAM: PF00072; Response regulator receiver doma; E=1.4e-18 NP_865920.1 PMID: 2666400 PMID: 11243806 best DB hits: BLAST: gb:AAF33505.1; (AF170176) Salmonella typhimurium sensor protein; E=1e-13 gb:AAG59806.1; AF305914_1 (AF305914) HydH [Klebsiella oxytoca]; E=2e-13 pir:S70528; sensor protein pilS - Myxococcus xanthus ----- gb:; E=4e-13 COG: BH3477; COG0642 Sensory transduction histidine kinases; E=2e-13 PFAM: PF00512; His Kinase A (phosphoacceptor) doma; E=2e-11 PF02518; Histidine kinase-, DNA gyrase B-, p; E=2.9e-21 NP_865922.1 PMID: 8905231 best DB hits: BLAST: swissprot:P73558; GATA_SYNY3 GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE; E=1e-123 pir:H83084; Glu-tRNA(Gln) amidotransferase subunit A PA4483; E=1e-121 swissprot:Q9Z580; GATA_STRCO GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE; E=1e-120 COG: slr0877; COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit; E=1e-124 PFAM: PF01425; Amidase; E=1.1e-195 NP_865927.1 best DB hits: BLAST: pir:B70469; type IV pilus assembly protein TapB - Aquifex aeolicus; E=0.001 embl:CAA10651.1; (AJ132364) PilB protein [Pseudomonas stutzeri]; E=0.005 pir:S55026; secretion protein - Aeromonas salmonicida ----- gb:; E=0.020 COG: aq_1971; COG2804 Predicted ATPases involved in pili biogenesis, PilB; E=9e-05 NP_865930.1 PMID: 97000351 best DB hits: BLAST: embl:CAB77297.1; (AL160312) conserved hypothetical protein; E=7e-28 pir:E75527; conserved hypothetical protein - Deinococcus radiodurans; E=4e-16 pir:B70392; hypothetical protein aq_1070 - Aquifex aeolicus -----; E=4e-16 COG: DR0370; COG1427 Predicted periplasmic solute-binding protein; E=4e-17 PFAM: PF02621; Uncharacterized ACR, COG1427; E=1.4e-26 NP_865931.1 PMID: 98196666 best DB hits: BLAST: ddbj:BAB06862.1; (AP001517) BH3143~unknown conserved protein in; E=4e-85 pir:H70368; conserved hypothetical protein aq_789 - Aquifex aeolicus; E=1e-84 pir:H64601; conserved hypothetical protein HP0656 - Helicobacter; E=2e-80 COG: BH3143; COG1060 Thiamine biosynthesis enzyme ThiH and related; E=4e-86 NP_865932.1 PMID: 10677288 best DB hits: BLAST: swissprot:O87172; MALQ_THEAQ 4-ALPHA-GLUCANOTRANSFERASE; E=1e-119 swissprot:P72785; MALQ_SYNY3 4-ALPHA-GLUCANOTRANSFERASE; E=1e-118 swissprot:P29851; MALQ_STRPN 4-ALPHA-GLUCANOTRANSFERASE; E=1e-114 COG: sll1676; COG1640 4-alpha-glucanotransferase; E=1e-119 PFAM: PF02446; 4-alpha-glucanotransferase; E=3.9e-185 NP_865934.1 PMID: 8432708 PMID: 7961421 best DB hits: BLAST: gb:AAC45219.1; (U87308) extracytoplasmic function alternative; E=4e-10 gb:AAC45221.1; (U87307) extracytoplasmic function alternative; E=5e-10 pir:H70507; probable sigE protein - Mycobacterium tuberculosis; E=8e-10 COG: Rv1221; COG1595 DNA-directed RNA polymerase specialized sigma; E=7e-11 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=0.065 NP_865936.1 PMID: 96312514 best DB hits: BLAST: ddbj:BAB14717.1; (AK023902) unnamed protein product [Homo; E=4e-22 gb:AAC59865.1; (U37373) up-regulated by thyroid hormone in; E=2e-21 ddbj:BAA97210.1; (AB020751) gb AAD55298.1~gene_id:MRG21.5~strong; E=4e-19 COG: slr1608; COG2133 Glucose/sorbosone dehydrogenases; E=1e-11 sll1245; COG2010 Cytochrome c, mono- and diheme variants; E=0.003 XF1740; COG2133 Glucose/sorbosone dehydrogenases; E=0.009 PFAM: PF00034; Cytochrome c; E=0.049 NP_865938.1 PMID: 7584053 PMID: 94301771 best DB hits: BLAST: ddbj:BAB06205.1; (AP001515) signal recognition particle (docking; E=2e-61 embl:CAB13468.1; (Z99112) signal recognition particle (docking; E=7e-61 swissprot:P51835; FTSY_BACSU CELL DIVISION PROTEIN FTSY HOMOLOG; E=2e-60 COG: BH2486; COG0552 Signal recognition particle GTPase; E=2e-62 PFAM: PF01443; Viral (Superfamily 1) RNA hel; E=0.51 PF02223; Thymidylate kinase; E=0.014 PF00448; SRP54-type protein, GTPase do; E=7.4e-103 NP_865942.1 PMID: 8346225 best DB hits: BLAST: pir:A48291; ornithine decarboxylase inhibitor - Escherichia coli; E=4e-70 swissprot:Q06065; ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY; E=4e-70 gb:AAG45333.1; AF273214_1 (AF273214) SasR [Myxococcus xanthus]; E=1e-69 COG: atoC; COG2204 AAA superfamily ATPases with N-terminal receiver; E=4e-71 aq_218_2; COG1221 NtrC family transcriptional regulators, ATPase; E=1e-63 TP0519; COG2204 AAA superfamily ATPases with N-terminal receiver; E=1e-63 PFAM: PF00498; FHA domain; E=6.7e-16 PF00158; Sigma-54 interaction domain; E=8.9e-140 NP_865945.1 PMID: 99426839 best DB hits: BLAST: gb:AAC16938.1; (AC002338) protein kinase [Arabidopsis; E=3e-14 ddbj:BAA83688.1; (AB011967) OsPK4 [Oryza sativa]; E=8e-14 gb:AAD03499.2; (AF035395) serinethreonine protein kinase PpkA; E=1e-12 COG: PA0074; COG0515 Serine/threonine protein kinases; E=2e-13 PFAM: PF00069; Protein kinase domain; E=2.3e-28 NP_865961.1 PMID: 3934047 best DB hits: BLAST: swissprot:P10427; YIM3_BPPH1 HYPOTHETICAL IMMUNITY REGION; E=0.28 pir:IMBP4; site-specific recombinase for integration and excision; E=0.28 NP_865962.1 best DB hits: BLAST: pir:C71228; hypothetical protein PH0085 - Pyrococcus horikoshii; E=0.87 NP_865968.1 best DB hits: BLAST: gb:AAD03908.1; (AF079317) unknown [Sphingomonas aromaticivorans]; E=3e-05 pir:D70590; hypothetical protein Rv3226c - Mycobacterium; E=1e-04 gb:AAF97194.1; AF268611_18 (AF268611) unknown [uncultured marine; E=0.003 COG: Rv3226c; COG2135 Uncharacterized ACR; E=1e-05 PFAM: PF02586; Uncharacterized ACR, COG2135; E=8.4e-08 NP_865969.1 PMID: 7596361 best DB hits: BLAST: swissprot:Q47155; DINP_ECOLI DNA-DAMAGE-INDUCIBLE PROTEIN P; E=5e-54 gb:AAG54556.1; AE005201_9 (AE005201) damage-inducible protein P; E=1e-53 pir:A81861; impBmucB/samB family protein NMA1661 [imported] -; E=3e-52 COG: dinP; COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA; E=5e-55 VC2287; COG0389 Nucleotidyltransferase/DNA polymerase involved in; E=1e-51 UU437; COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA; E=1e-25 PFAM: PF00817; impB/mucB/samB family; E=5.9e-115 NP_865972.1 PMID: 8843436 best DB hits: BLAST: embl:CAB62702.1; (AL133422) hypothetical protein SCM1.44.; E=7e-37 pir:S74705; hypothetical protein slr1303 - Synechocystis sp. (strain; E=1e-20 pir:H70793; hypothetical protein Rv3703c - Mycobacterium; E=1e-19 COG: slr1303; COG1262 Uncharacterized BCR; E=1e-21 NP_865973.1 PMID: 97061201 best DB hits: BLAST: embl:CAC02633.1; (AL390114) possible hypothetical 35.4 Kd protein; E=1e-45 pir:S74850; hypothetical protein slr0865 - Synechocystis sp. (strain; E=1e-34 pir:F70793; hypothetical protein Rv3701c - Mycobacterium; E=2e-33 NP_865977.1 PMID: 3052291 PMID: 8052622 best DB hits: BLAST: pir:H75550; RNA polymerase sigma-E factor - Deinococcus radiodurans; E=4e-08 embl:CAB72200.1; (AL138851) RNA polymerase sigma factor; E=1e-06 swissprot:P45215; YE59_HAEIN PROBABLE RNA POLYMERASE SIGMA FACTOR; E=2e-06 COG: DR0180; COG1595 DNA-directed RNA polymerase specialized sigma; E=3e-09 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=2.3e-05 NP_865979.1 PMID: 11679351 NP_865980.1 PMID: 7899078 best DB hits: BLAST: pir:H83232; probable ATP-dependent helicase PA3297 [imported] -; E=0.0 pir:F82207; ATP-dependent helicase HrpA VC1382 [imported] - Vibrio; E=0.0 swissprot:P43329; HRPA_ECOLI ATP-DEPENDENT HELICASE HRPA -----; E=0.0 COG: PA3297; COG1643 HrpA-like helicases; E=0.0 PFAM: PF00005; ABC transporter; E=0.016 PF00270; DEAD/DEAH box helicase; E=0.66 PF00271; Helicase conserved C-terminal; E=1.3e-12 NP_865981.1 PMID: 21595285 best DB hits: BLAST: pir:E69833; conserved hypothetical protein yhjE - Bacillus subtilis; E=0.65 NP_865986.1 best DB hits: BLAST: gb:AAB41030.2; (U23947) LipA [Mycoplasma pulmonis]; E=0.31 gb:AAC55162.1; (U60315) MC034L [Molluscum contagiosum virus; E=0.69 pir:T02318; hypothetical protein F13P17.14 - Arabidopsis thaliana; E=0.82 NP_865993.1 PMID: 11065374 best DB hits: BLAST: ddbj:BAA82053.1; (AB022175) a-type carbonic anhydrase; E=2e-20 pir:F82479; carbonic anhydrase VCA0274 [imported] - Vibrio cholerae; E=6e-18 swissprot:P94170; CAH_ANASP CARBONIC ANHYDRASE PRECURSOR; E=4e-16 COG: VCA0274; COG3338 Carbonic anhydrase; E=6e-19 PFAM: PF00194; Eukaryotic-type carbonic anhy; E=4.1e-15 NP_865994.1 PMID: 1429718 PMID: 1346764 best DB hits: BLAST: swissprot:P80057; GSEP_BACLI GLUTAMYL ENDOPEPTIDASE PRECURSOR; E=9e-04 gb:AAB21460.1; glutamic acid specific endopeptidase, GSE=serine; E=9e-04 NP_865995.1 PMID: 9163424 best DB hits: BLAST: swissprot:P55440; Y4FB_RHISN HYPOTHETICAL 73.7 KD PROTEIN Y4FB; E=8e-65 pir:D75375; conserved hypothetical protein - Deinococcus radiodurans; E=1e-41 pir:C83479; probable proteinase PA1327 [imported] - Pseudomonas; E=3e-31 COG: DR1599; COG0265 Trypsin-like serine proteases, typically; E=1e-42 PA1327; COG1864 DNA/RNA endonuclease G, NUC1; E=3e-32 PFAM: PF00089; Trypsin; E=0.24 PF01727; Domain of unknown function DUF; E=0.0043 PF00089; Trypsin; E=0.033 NP_865998.1 best DB hits: BLAST: ddbj:BAA77283.1; (AB013135) DyP [Galactomyces geotrichum]; E=4e-22 gb:AAB58908.1; (U77073) peroxidase [Polyporaceae sp.]; E=8e-22 pir:D75610; probable peroxidase - Deinococcus radiodurans (strain; E=8e-18 COG: DRA0145; COG2837 Predicted iron-dependent peroxidase; E=7e-19 NP_865999.1 best DB hits: BLAST: pir:T36192; hypothetical protein SCE29.13c - Streptomyces coelicolor; E=3e-04 NP_866002.1 PMID: 11266614 best DB hits: BLAST: embl:CAC01644.1; (AL391072) hypothetical protein SC9A4.17; E=4e-34 embl:CAB56738.1; (AL121600) membrane protein; E=1e-22 pir:D83260; hypothetical protein PA3080 [imported] - Pseudomonas; E=2e-08 PFAM: PF02012; BNR repeat; E=0.11 NP_866003.1 PMID: 1701851 PMID: 7657606 best DB hits: BLAST: swissprot:P24347; MM11_HUMAN STROMELYSIN-3 PRECURSOR (MATRIX; E=0.042 embl:CAA40918.1; (X57766) stromelysin-3 precursor [Homo sapiens]; E=0.051 ref:XP_009873.1; matrix metalloproteinase 11 (stromelysin 3); E=0.051 NP_866004.1 PMID: 20437337 best DB hits: BLAST: pir:B83347; hypothetical protein PA2392 [imported] - Pseudomonas; E=1e-50 PFAM: PF02022; Integrase Zinc binding domain; E=0.25 NP_866007.1 PMID: 20437337 best DB hits: BLAST: pir:F83498; hypothetical protein PA1166 [imported] - Pseudomonas; E=0.035 COG: PA1166; COG0412 Dienelactone hydrolase and related enzymes; E=0.003 PFAM: PF01738; Dienelactone hydrolase; E=0.0023 NP_866008.1 best DB hits: BLAST: gb:AAG38844.1; (AY010120) reductasehalogenase; E=1e-11 pir:T30590; alkylhalidase homolog - Amycolatopsis orientalis -----; E=2e-08 pir:T34627; probable electron transfer oxidoreductase - Streptomyces; E=2e-06 COG: Rv1751; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related; E=8e-05 Ta0326; COG0644 Dehydrogenases (flavoproteins); E=0.002 BH1851; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and; E=0.002 PFAM: PF01134; Glucose inhibited division prot; E=0.11 PF00732; GMC oxidoreductases; E=0.0013 PF01266; D-amino acid oxidase; E=0.0085 NP_866009.1 PMID: 11259647 best DB hits: BLAST: swissprot:O59930; LEU3_PHACH 3-ISOPROPYLMALATE DEHYDROGENASE; E=0.38 NP_866010.1 best DB hits: BLAST: pir:A58519; hypothetical 345 protein - Streptomyces coelicolor; E=3e-57 embl:CAC16730.1; (AL450289) conserved hypothetical protein; E=3e-50 gb:AAC59865.1; (U37373) up-regulated by thyroid hormone in; E=1e-44 COG: slr1608; COG2133 Glucose/sorbosone dehydrogenases; E=2e-16 NP_866011.1 PMID: 9510026 best DB hits: BLAST: gb:AAB92243.1; (AF035381) ovoperoxidase [Lytechinus variegatus]; E=4e-08 pir:T24502; hypothetical protein T06D8.10 - Caenorhabditis elegans; E=4e-07 gb:AAF53674.2; (AE003659) CG10211 gene product [Drosophila; E=2e-06 NP_866012.1 PMID: 10910347 PMID: 8325504 best DB hits: BLAST: pir:C82841; cysteine proteinase XF0156 [imported] - Xylella; E=1e-13 embl:CAC18648.1; (AJ302013) cathepsin B-like cysteine protease 3; E=0.006 pir:H71456; probable pyrolysin (EC 3.4.-.-) homolog PH0310; E=0.086 PFAM: PF00112; Papain family cysteine protease; E=0.019 NP_866016.1 PMID: 11756688 best DB hits: BLAST: gb:AAG58100.1; AE005527_3 (AE005527) unknown protein encoded by; E=0.003 gb:AAG53987.1; AF327445_1 (AF327445) transposase A; E=0.011 gb:AAF28119.1; AF153317_15 (AF153317) InsA [Shigella; E=0.026 PFAM: PF01381; Helix-turn-helix; E=0.53 PF01527; Transposase; E=1.5e-15 NP_866017.1 PMID: 10594830 best DB hits: BLAST: gb:AAA88919.1; (U13013) ORFB [Leptospira interrogans]; E=3e-47 gb:AAA88916.1; (U13012) ORFB [Leptospira interrogans]; E=1e-46 gb:AAC05649.1; (AF038931) probable transposase-related protein; E=1e-45 COG: DRB0019.2; COG2801 transposase; E=1e-35 PFAM: PF00665; Integrase core domain; E=4.8e-40 NP_866020.1 PMID: 11016950 best DB hits: BLAST: gb:AAG18661.1; (AE004971) Vng0021h [Halobacterium sp. NRC-1]; E=8e-22 gb:AAG18694.1; (AE004974) Vng0056h [Halobacterium sp. NRC-1]; E=8e-20 pir:T44318; transposase homolog [imported] - Vibrio cholerae -----; E=4e-15 NP_866022.1 PMID: 9371463 PMID: 10783239 best DB hits: BLAST: pir:F69192; conserved hypothetical protein MTH695 - Methanobacterium; E=2e-09 pir:B75516; conserved hypothetical protein - Deinococcus radiodurans; E=7e-04 pir:H82146; conserved hypothetical protein VC1882 [imported] -; E=0.007 COG: MTH695; COG0577 Predicted permease; E=2e-10 PFAM: PF02687; Predicted permease; E=1.5e-21 NP_866023.1 PMID: 11292750 best DB hits: BLAST: swissprot:P03835; YI41_ECOLI INSERTION ELEMENT IS4 HYPOTHETICAL; E=0.030 embl:CAA57483.1; (X81894) ORF [Enterobacter agglomerans]; E=0.064 COG: yi41; COG3385 Predicted transposase; E=0.003 NP_866025.1 PMID: 3288195 PMID: 3762695 best DB hits: BLAST: embl:CAA11724.1; (AJ223978) ABC transporter, YvrO; E=7e-48 gb:AAB89781.1; (AE001001) ABC transporter ATP-binding protein; E=4e-47 embl:CAC21614.1; (AL512667) ABC transporter ATP-binding; E=6e-47 COG: AF1469; COG1136 ABC-type (unclassified) transport system, ATPase; E=4e-48 PFAM: PF00005; ABC transporter; E=1.7e-57 NP_866026.1 PMID: 9301333 PMID: 2249654 best DB hits: BLAST: swissprot:P32716; YJCR_ECOLI HYPOTHETICAL 36.9 KDA PROTEIN IN; E=3e-04 gb:AAG59280.1; AE005641_5 (AE005641) membrane protein; E=4e-04 pir:S76813; hypothetical protein sll1481 - Synechocystis sp. (strain; E=0.002 COG: yjcR; COG1566 Multidrug resistance efflux pump; E=2e-05 sll1481; COG0845 Membrane-fusion protein; E=2e-04 PA5159; COG1566 Multidrug resistance efflux pump; E=4e-04 PFAM: PF02017; CIDE-N domain; E=0.19 PF00364; Biotin-requiring enzyme; E=0.018 NP_866028.1 PMID: 12024217 best DB hits: BLAST: pir:F69192; conserved hypothetical protein MTH695 - Methanobacterium; E=0.005 COG: MTH695; COG0577 Predicted permease; E=5e-04 PFAM: PF02687; Predicted permease; E=1.4e-20 NP_866030.1 best DB hits: BLAST: gb:AAF50472.1; (AE003556) CG7986 gene product [alt 2] [Drosophila; E=0.38 NP_866031.1 PMID: 11292750 best DB hits: BLAST: swissprot:P03835; YI41_ECOLI INSERTION ELEMENT IS4 HYPOTHETICAL; E=0.030 embl:CAA57483.1; (X81894) ORF [Enterobacter agglomerans]; E=0.064 COG: yi41; COG3385 Predicted transposase; E=0.003 NP_866034.1 PMID: 9661020 best DB hits: BLAST: gb:AAG27731.1; AF312031_1 (AF312031) multi-drug efflux transporter; E=8e-12 pir:B83476; probable transporter PA1361 [imported] - Pseudomonas; E=1e-11 pir:D81950; probable transmembrane efflux protein NMA1022 [imported]; E=8e-10 COG: PA1361; COG0534 Na+-driven multidrug efflux pump; E=1e-12 PFAM: PF01554; Uncharacterized membrane protein fam; E=0.0072 NP_866035.1 best DB hits: BLAST: pir:S75877; hypothetical protein slr1166 - Synechocystis sp. (strain; E=1e-14 pir:A75033; probable hexosyltransferase (EC 2.4.1.-) PAB0827; E=2e-09 pir:D72511; probable hexosyltransferase (EC 2.4.1.-) APE2066; E=5e-09 COG: slr1166; COG0438 Predicted glycosyltransferases; E=1e-15 PAB2292; COG0297 Glycogen synthase; E=4e-05 BH1683; COG0438 Predicted glycosyltransferases; E=5e-05 PFAM: PF00534; Glycosyl transferases group 1; E=2.1e-12 NP_866037.1 best DB hits: BLAST: swissprot:P39614; YWDF_BACSU HYPOTHETICAL 30.6 KDA PROTEIN IN; E=0.80 PFAM: PF00535; Glycosyl transferase; E=4.7e-07 NP_866039.1 PMID: 11759840 best DB hits: BLAST: embl:CAB93418.1; (AL357524) transposase [Streptomyces; E=0.60 NP_866042.1 best DB hits: BLAST: pir:A83374; hypothetical protein PA2169 [imported] - Pseudomonas; E=6e-14 NP_866056.1 PMID: 0009611225 PMID: 0010550052 best DB hits: BLAST: pir:E70385; conserved hypothetical protein aq_987 - Aquifex aeolicus; E=6e-09 pir:D72545; hypothetical protein APE1648 - Aeropyrum pernix (strain; E=4e-06 pir:H70517; probable lppD protein - Mycobacterium tuberculosis; E=1e-05 COG: aq_987; COG2110 Uncharacterized ACR related to the C-terminal domain; E=5e-10 APE1648; COG2110 Uncharacterized ACR related to the C-terminal; E=4e-07 ymdB; COG2110 Uncharacterized ACR related to the C-terminal domain; E=4e-06 PFAM: PF01661; Appr-1-p processing enzyme family; E=9.4e-18 NP_866060.1 best DB hits: BLAST: pir:S74915; extracellular nuclease - Synechocystis sp. (strain PCC; E=0.005 pir:C81675; polymorphic membrane protein BC family TC0694; E=0.10 COG: sll0656_1; COG3204 Uncharacterized BCR; E=0.002 PFAM: PF00404; Dockerin type I repeat; E=0.25 NP_866061.1 PMID: 9358059 best DB hits: BLAST: gb:AAB26985.1; (L48340) catalase [Methylobacterium extorquens]; E=0.0 swissprot:Q59714; CATA_PSEPU CATALASE ----- gb: AAB88219.1; E=1e-152 swissprot:P48062; CATA_BORPE CATALASE ----- pir: S60757; E=1e-152 COG: PA4236; COG0753 Catalase; E=1e-153 PFAM: PF01334; Bacterioferritin; E=0.24 PF00199; Catalase; E=1.7e-261 NP_866062.1 best DB hits: BLAST: embl:CAB83202.1; (AJ277117) membrane protein; E=4e-30 pir:H82825; transport protein XF0281 [imported] - Xylella fastidiosa; E=4e-28 swissprot:O51039; Y006_BORBU HYPOTHETICAL PROTEIN BB0006 -----; E=2e-13 COG: XF0281; COG0628 Predicted permease; E=4e-29 PFAM: PF01594; Domain of unknown function DUF20; E=2.7e-06 NP_866065.1 PMID: 6350601 PMID: 89056708 PMID: 94237165 best DB hits: BLAST: swissprot:P55709; Y4YA_RHISN HYPOTHETICAL 49.9 KD PROTEIN Y4YA; E=3e-40 gb:AAG45731.1; AF229441_2 (AF229441) y4yA [Sinorhizobium fredii]; E=3e-40 gb:AAG45729.1; AF229440_2 (AF229440) y4yA [Sinorhizobium fredii]; E=3e-33 COG: aq_728; COG0019 Diaminopimelate decarboxylase; E=7e-08 PA4839; COG1166 Arginine decarboxylase (spermidine biosynthesis); E=5e-05 XF1116_2; COG0019 Diaminopimelate decarboxylase; E=5e-05 PFAM: PF02784; Pyridoxal-dependent decarboxyla; E=5.9e-08 NP_866066.1 best DB hits: BLAST: gb:AAG56655.1; AE005390_2 (AE005390) orf, hypothetical protein; E=5e-05 swissprot:P77148; YDHS_ECOLI HYPOTHETICAL 60.8 KDA PROTEIN IN; E=1e-04 NP_866067.1 PMID: 93345669 best DB hits: BLAST: swissprot:Q44004; CYSM_ALCEU CYSTEINE SYNTHASE (O-ACETYLSERINE; E=2e-35 pir:T43792; cysteine synthase (EC 4.2.99.8) cysK [similarity] -; E=1e-31 pir:H81161; probable cysteine synthase (EC 4.2.99.8) NMA0974; E=3e-31 COG: NMB0763; COG0031 Cysteine synthase; E=2e-32 PFAM: PF00291; Pyridoxal-phosphate dependent enzyme; E=9.2e-57 NP_866069.1 PMID: 9371463 best DB hits: BLAST: pir:H69043; conserved hypothetical protein MTH1330 -; E=0.004 swissprot:Q50500; YE63_METTH HYPOTHETICAL PROTEIN MTH1463 (ORF11); E=0.005 pir:A69088; conserved hypothetical protein MTH1653 -; E=0.010 COG: MTH1330; COG3271 Predicted double-glycine peptidase; E=4e-04 NP_866072.1 PMID: 96196168 best DB hits: BLAST: pir:T34745; probable proteinase pfpI - Streptomyces coelicolor; E=6e-55 pir:F75423; proteinase I - Deinococcus radiodurans (strain R1); E=1e-50 pir:E83601; proteinase PfpI PA0355 [imported] - Pseudomonas; E=3e-40 COG: DR1199; COG0693 intracellular protease/amidase; E=1e-51 BH1980; COG0753 Catalase; E=4e-07 BB0621; COG0693 intracellular protease/amidase; E=4e-07 PFAM: PF00117; Glutamine amidotransferase class-I; E=0.13 PF01965; ThiJ/PfpI family; E=1.1e-61 NP_866073.1 PMID: 8007818 best DB hits: BLAST: gb:AAB31024.1; (S71704) Mip=24 kda macrophage infectivity; E=2e-09 gb:AAG57782.1; AE005496_5 (AE005496) Z3974 gene product; E=4e-06 pir:E83611; conserved hypothetical protein PA0269 [imported] -; E=6e-06 COG: PA0269; COG2128 Uncharacterized ACR; E=6e-07 NP_866074.1 PMID: 7559423 best DB hits: BLAST: swissprot:P48638; GSHR_ANASP GLUTATHIONE REDUCTASE (GR) (GRASE); E=7e-50 embl:CAA12270.1; (AJ224977) ORF 4 [Sphingomonas sp. RW5]; E=2e-49 gb:AAK04944.1; AE006318_7 (AE006318) glutathione reductase (EC; E=6e-49 COG: gor; COG1249 Dihydrolipoamide dehydrogenase/glutathione; E=4e-49 PFAM: PF00996; GDP dissociation inhibitor; E=0.34 PF00070; Pyridine nucleotide-disulphide; E=3.3e-62 PF02852; Pyridine nucleotide-disulphide; E=3.4e-06 NP_866077.1 PMID: 7602590 best DB hits: BLAST: embl:CAB59716.1; (AL132707) zinc-binding oxidoreductase; E=3e-31 pir:T10203; hypothetical protein F25G13.100 - Arabidopsis thaliana; E=2e-28 embl:CAC14345.1; (AL445945) zinc-binding oxidoreductase; E=1e-26 COG: VC0552; COG0604 NADPH:quinone reductase and related Zn-dependent; E=2e-26 PFAM: PF00107; Zinc-binding dehydrogenases; E=5.2e-48 NP_866080.1 best DB hits: BLAST: swissprot:P40398; YHXD_BACSU HYPOTHETICAL OXIDOREDUCTASE IN; E=2e-67 swissprot:P80873; GS39_BACSU GENERAL STRESS PROTEIN 39 (GSP39); E=3e-65 gb:AAG02162.1; AF212041_18 (AF212041) ribitol dehydrogenase; E=8e-65 COG: BS_yhxD; COG1028 Dehydrogenases with different specificities; E=2e-68 BH1511; COG1028 Dehydrogenases with different specificities (related; E=1e-64 DRA0364; COG1028 Dehydrogenases with different specificities; E=1e-62 PFAM: PF00106; short chain dehydrogenase; E=8.7e-53 PF00678; Short chain dehydrogenase/reduct; E=5.5e-09 NP_866081.1 best DB hits: BLAST: pir:T36457; probable DNA-binding protein - Streptomyces coelicolor; E=2e-25 embl:CAB89026.1; (AL353870) hypothetical protein SC6F7.18c.; E=0.002 NP_866083.1 PMID: 8973648 PMID: 91255245 best DB hits: BLAST: swissprot:P74917; C552_THIFE CYTOCHROME C-552 PRECURSOR (C552); E=8e-11 pir:B83334; probable cytochrome c PA2482 [imported] - Pseudomonas; E=5e-10 pir:F81040; cytochrome C4 NMB1805 [imported] - Neisseria; E=8e-10 COG: PA2482; COG2863 Cytochrome c553; E=4e-11 VC1439; COG2010 Cytochrome c, mono- and diheme variants; E=0.002 NP_866084.1 PMID: 11481431 NP_866085.1 best DB hits: PFAM: PF01569; PAP2 superfamily; E=0.35 NP_866086.1 PMID: 1847686 PMID: 94364936 PMID: 83257235 PMID: 88054981 best DB hits: BLAST: gb:AAD20227.1; (AF111945) quinol oxidase subunit I [Rhodobacter; E=1e-153 swissprot:P24010; COX1_BACSU CYTOCHROME C OXIDASE POLYPEPTIDE I; E=1e-102 pir:S14397; cytochrome-c oxidase (EC 1.9.3.1) chain I - Bacillus; E=1e-102 COG: BS_ctaD; COG0843 Heme/copper-type cytochrome/quinol oxidases,; E=1e-103 BH2614; COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit; E=1e-97 BS_qoxB; COG0843 Heme/copper-type cytochrome/quinol oxidases,; E=2e-90 PFAM: PF00115; Cytochrome C and Quinol oxida; E=2e-160 NP_866087.1 PMID: 89231697 PMID: 91161592 best DB hits: BLAST: pir:A23711; cytochrome-c oxidase (EC 1.9.3.1) chain IIc precursor -; E=3e-42 swissprot:Q04441; COX2_BACFI CYTOCHROME C OXIDASE POLYPEPTIDE II; E=5e-38 ddbj:BAB06334.1; (AP001516) cytochrome caa3 oxidase (subunit II); E=2e-35 COG: BH2615_1; COG1622 Heme/copper-type cytochrome/quinol oxidases,; E=2e-21 XF1390; COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit; E=1e-14 slr1136; COG1622 Heme/copper-type cytochrome/quinol oxidases,; E=3e-14 PFAM: PF00116; Cytochrome C oxidase subunit II,; E=6.3e-25 PF00034; Cytochrome c; E=7e-11 NP_866088.1 best DB hits: BLAST: pir:G70340; Mg(2+) transport ATPase - Aquifex aeolicus ----- gb:; E=2e-10 gb:AAD43996.1; (U59485) attV [Agrobacterium tumefaciens]; E=1e-09 ddbj:BAB06944.1; (AP001518) magnesium (Mg2+) transporter; E=1e-09 COG: aq_447; COG1285 Uncharacterized membrane protein; E=2e-11 PFAM: PF02308; MgtC family; E=1.4e-20 NP_866089.1 best DB hits: BLAST: pir:B75253; DedA family protein - Deinococcus radiodurans (strain; E=2e-38 pir:S76640; hypothetical protein - Synechocystis sp. (strain PCC; E=1e-33 swissprot:Q48630; APL_LACLC ALKALINE PHOSPHATASE LIKE PROTEIN; E=1e-29 COG: DR2612; COG0586 Uncharacterized membrane-associated protein; E=2e-39 PFAM: PF00452; Apoptosis regulator proteins, Bcl-2; E=0.022 PF00597; DedA family; E=1.1e-09 NP_866090.1 PMID: 95214091 best DB hits: BLAST: pir:F82618; chemotaxis-related protein kinase XF1952 [imported] -; E=2e-09 gb:AAC25076.1; (AF044495) CheY homolog [Agrobacterium; E=5e-09 pir:S75938; chemotaxis protein cheA (EC 2.7.-.-) - Synechocystis sp.; E=6e-09 COG: sll0043_4; COG0784 CheY-like receiver domains; E=6e-10 CPn0586; COG2204 AAA superfamily ATPases with N-terminal receiver; E=8e-08 sll0039; COG0784 CheY-like receiver domains; E=8e-08 PFAM: PF00072; Response regulator receiver doma; E=8e-16 NP_866091.1 PMID: 92232718 PMID: 93155023 best DB hits: BLAST: pir:A83333; probable deaminase PA2499 [imported] - Pseudomonas; E=3e-13 embl:CAC18685.1; (AL451182) deaminase [Streptomyces; E=1e-12 embl:CAA07230.1; (AJ006764) deoxycytidylate deaminase; E=3e-12 COG: PA2499; COG0590 Cytosine/adenosine deaminases; E=3e-14 PFAM: PF00383; Cytidine and deoxycytidylate de; E=2.6e-19 NP_866093.1 best DB hits: BLAST: pir:A69202; conserved hypothetical protein MTH763 - Methanobacterium; E=0.79 NP_866096.1 PMID: 11743193 best DB hits: BLAST: embl:CAC16998.1; (AL450350) hypothetical protein [Streptomyces; E=0.45 NP_866097.1 best DB hits: BLAST: gb:AAG57269.1; AE005445_6 (AE005445) oxidoreductase; E=4e-41 swissprot:P33368; YOHF_ECOLI HYPOTHETICAL OXIDOREDUCTASE IN; E=8e-41 pir:G75333; 3-oxoacyl-acyl carrier protein reductase - Deinococcus; E=7e-33 COG: yohF; COG1028 Dehydrogenases with different specificities (related; E=8e-42 BS_ycdF; COG1028 Dehydrogenases with different specificities; E=2e-31 TM1724; COG1028 Dehydrogenases with different specificities (related; E=4e-25 PFAM: PF00106; short chain dehydrogenase; E=1.7e-42 PF00678; Short chain dehydrogenase/reduct; E=1.2e-07 NP_866098.1 PMID: 1340475 PMID: 8021175 best DB hits: BLAST: pir:T35689; hypothetical protein SC7C7.11 SC7C7.11 - Streptomyces; E=5e-30 swissprot:Q47953; FTPA_HAEDU FINE TANGLED PILI MAJOR SUBUNIT (24; E=1e-17 embl:CAB61290.1; (AL132991) DNA-binding protein; E=3e-16 COG: dps; COG0783 Starvation-inducible DNA-binding protein; E=1e-14 PFAM: PF02047; Dps protein family; E=4.1e-45 NP_866100.1 PMID: 8012595 best DB hits: BLAST: pir:D75431; probable general stress protein 26 - Deinococcus; E=4e-18 pir:D75427; hypothetical protein - Deinococcus radiodurans (strain; E=2e-07 swissprot:P80238; GS26_BACSU GENERAL STRESS PROTEIN 26 (GSP26); E=0.10 NP_866101.1 best DB hits: BLAST: embl:CAC01649.1; (AL391072) conserved hypothetical protein; E=1e-06 pir:B83370; conserved hypothetical protein PA2211 [imported] -; E=5e-04 swissprot:P55567; Y4MH_RHISN HYPOTHETICAL 33.9 KD PROTEIN Y4MH; E=5e-04 NP_866103.1 PMID: 8843436 best DB hits: BLAST: embl:CAB56147.1; (AL117669) hypothetical protein [Streptomyces; E=3e-07 embl:CAB55704.1; (AL117387) secreted protein; E=0.014 NP_866107.1 PMID: 2498283 PMID: 2498284 PMID: 814121 best DB hits: BLAST: gb:AAC27808.1; (AF069392) polar flagellin [Vibrio; E=2e-17 gb:AAC01555.1; (AF007122) flagellin [Vibrio cholerae]; E=4e-17 pir:C82112; flagellin FlaE VC2144 [imported] - Vibrio cholerae; E=4e-17 COG: VC2144; COG1344 Flagellin and related hook-associated proteins; E=4e-18 PFAM: PF00669; Bacterial flagellin N-terminus; E=1e-26 PF00700; Bacterial flagellin C-terminus; E=1.2e-12 NP_866111.1 PMID: 8905231 best DB hits: BLAST: pir:S76294; hypothetical protein - Synechocystis sp. (strain PCC; E=6e-19 gb:AAD00285.1; (U78604) membrane protein [Streptococcus; E=2e-12 gb:AAK05280.1; AE006350_7 (AE006350) permease [Lactococcus lactis; E=4e-10 COG: slr0784; COG0628 Predicted permease; E=5e-20 PFAM: PF01594; Domain of unknown function DUF20; E=1.9e-45 NP_866112.1 PMID: 98344137 best DB hits: BLAST: swissprot:P11666; YGGB_ECOLI HYPOTHETICAL 30.9 KDA PROTEIN IN; E=5e-27 pir:D75011; hypothetical protein PAB1281 - Pyrococcus abyssi (strain; E=1e-22 pir:E71140; hypothetical protein PH0336 - Pyrococcus horikoshii; E=2e-22 COG: yggB; COG0668 Small-conductance mechanosensitive channel; E=5e-28 PA5022; COG3264 Small-conductance mechanosensitive channel; E=5e-13 PFAM: PF00924; Uncharacterized protein family; E=4.4e-52 NP_866113.1 PMID: 9634230 best DB hits: BLAST: swissprot:Q10616; YC90_MYCTU HYPOTHETICAL 56.0 KDA PROTEIN RV1290C; E=4e-35 pir:T35776; hypothetical protein SC8A6.09c SC8A6.09 - Streptomyces; E=1e-23 gb:AAK03181.1; (AE006150) unknown [Pasteurella multocida]; E=1e-11 NP_866114.1 PMID: 9679194 best DB hits: BLAST: pir:H82702; small conductance mechanosensitive ion channel XF1258; E=2e-17 pir:E71140; hypothetical protein PH0336 - Pyrococcus horikoshii; E=1e-15 pir:B83096; conserved hypothetical protein PA4394 [imported] -; E=2e-15 COG: XF1258; COG0668 Small-conductance mechanosensitive channel; E=2e-18 HI0195.1; COG3264 Small-conductance mechanosensitive channel; E=1e-09 PFAM: PF00924; Uncharacterized protein family UPF00; E=6.2e-44 NP_866119.1 PMID: 9278503 best DB hits: BLAST: pir:F82056; conserved hypothetical protein VC2610 [imported] -; E=3e-26 pir:F83600; conserved hypothetical protein PA0368 [imported] -; E=5e-24 swissprot:P45524; YHET_ECOLI HYPOTHETICAL 38.5 KD PROTEIN IN; E=2e-23 COG: VC2610; COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold; E=3e-27 YMR210w; COG0429 Predicted hydrolase of the alpha/beta-hydrolase; E=1e-23 PFAM: PF00561; alpha/beta hydrolase fold; E=3.9e-06 NP_866123.1 PMID: 8265357 best DB hits: BLAST: pir:F83054; conserved hypothetical protein PA4738 [imported] -; E=3e-06 swissprot:P32691; YJBJ_ECOLI PROTEIN YJBJ ----- pir: D65212; E=2e-05 embl:CAB98302.2; (AL390114) probable 8.3 Kd protein in dinf-qor; E=0.35 COG: PA4738; COG3237 Uncharacterized BCR; E=3e-07 NP_866129.1 PMID: 7792599 PMID: 7674922 best DB hits: BLAST: swissprot:P54984; Y100_SYNY3 HYPOTHETICAL 42.7 KD PROTEIN SLL0100; E=2e-59 gb:AAF26972.1; AC018363_17 (AC018363) IAA-amino acid hydrolase; E=1e-51 swissprot:P54968; ILR1_ARATH IAA-AMINO ACID HYDROLASE 1 -----; E=2e-51 COG: sll0100; COG1473 Metal-dependent amidohydrolases/aminoacylases; E=2e-60 PFAM: PF01546; Peptidase M20/M25/M40; E=4.9e-32 NP_866130.1 ATP-dependent carboxylate-amine ligase NP_866131.1 PMID: 7553451 best DB hits: BLAST: swissprot:Q06065; ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY; E=1e-86 swissprot:P45671; NTRC_AZOBR NITROGEN ASSIMILATION REGULATORY; E=4e-84 pir:S42745; nitrogen assimilation regulatory protein ntrC -; E=5e-84 COG: atoC; COG2204 AAA superfamily ATPases with N-terminal receiver; E=1e-87 PFAM: PF00072; Response regulator receiver dom; E=2e-29 PF00004; ATPase associated with v; E=0.34 PF00158; Sigma-54 interaction domain; E=5.2e-129 NP_866138.1 best DB hits: BLAST: swissprot:AHNK_HUMAN_2; [Segment 2 of 2] NEUROBLAST DIFFERENTIATION; E=0.006 pir:A45259; desmoyokin - human (fragments); E=0.018 NP_866139.1 best DB hits: BLAST: pir:T26079; hypothetical protein W02A2.5 - Caenorhabditis elegans; E=0.21 PFAM: PF01679; Uncharacterized protein family UPF00; E=2.1e-11 NP_866140.1 best DB hits: BLAST: ddbj:BAB06016.1; (AP001515) BH2297~unknown conserved protein; E=3e-13 ddbj:BAB05689.1; (AP001513) BH1970~unknown conserved protein; E=2e-10 pir:A69782; probable membrane protein ydfS - Bacillus subtilis; E=6e-08 COG: BH2297; COG2323 Predicted membrane protein; E=3e-14 NP_866141.1 PMID: 11248100 best DB hits: BLAST: gb:AAK03159.1; (AE006148) unknown [Pasteurella multocida]; E=3e-53 embl:CAC10327.1; (AL442629) integral membrane protein; E=0.020 PFAM: PF01260; AP endonuclease 1; E=0.4 NP_866142.1 PMID: 20317087 best DB hits: BLAST: pir:D83165; conserved hypothetical protein PA3857 [imported] -; E=6e-19 pir:A70131; phosphatidyltransferase homolog - Lyme disease; E=2e-12 gb:AAF27310.1; AF155772_4 (AF155772) phosphatidylcholine synthase; E=4e-11 COG: BB0249; COG1183 Phosphatidylserine synthase; E=2e-13 NP_866143.1 PMID: 99453779 best DB hits: BLAST: pir:S76044; hypothetical protein slr0322 - Synechocystis sp. (strain; E=6e-10 pir:F70801; hypothetical protein Rv3765c - Mycobacterium; E=3e-09 embl:CAB54568.1; (AJ006392) response regulator [Streptococcus; E=4e-09 COG: slr0322_2; COG0784 CheY-like receiver domains; E=6e-11 Rv3765c; COG0745 Response regulators consisting of a CheY-like; E=3e-10 DRA0355_2; COG0784 CheY-like receiver domains; E=2e-09 PFAM: PF00072; Response regulator receiver doma; E=1.1e-14 NP_866145.1 PMID: 8905231 best DB hits: BLAST: swissprot:Q02998; YH19_RHOCA HYPOTHETICAL 104.1 KD PROTEIN IN HYPE; E=1e-120 gb:AAA98755.1; (L29642) methyltransferase [Pseudomonas; E=5e-58 pir:E82198; sensor histidine kinaseresponse regulator VC1445; E=3e-49 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=4e-38 BH1655; COG1352 Methylase of chemotaxis methyl-accepting proteins; E=6e-31 arcB_1; COG0642 Sensory transduction histidine kinases; E=4e-30 PFAM: PF01339; CheB methylesterase; E=3.9e-06 PF01303; Egg lysin (Sperm-lysin); E=0.017 PF01339; CheB methylesterase; E=0.076 NP_866146.1 best DB hits: BLAST: pir:G75425; conserved hypothetical protein - Deinococcus radiodurans; E=5e-44 embl:CAA59823.1; (X85811) ORF N2219 [Saccharomyces cerevisiae]; E=4e-11 embl:CAA95970.1; (Z71370) ORF YNL094w [Saccharomyces cerevisiae]; E=4e-11 NP_866147.1 PMID: 95012680 best DB hits: BLAST: pir:G75252; probable brkB protein - Deinococcus radiodurans (strain; E=3e-19 pir:I40328; serum-resistance protein brkB [imported] - Bordetella; E=2e-12 pir:A82807; BrkB protein XF0432 [imported] - Xylella fastidiosa; E=2e-09 COG: DR2609; COG1295 tRNA-processing ribonuclease BN; E=2e-20 NP_866148.1 PMID: 94329558 PMID: 89024591 best DB hits: BLAST: ddbj:BAB03982.1; (AP001507) RNA polymerase ECF-type sigma factor; E=2e-07 embl:CAA09264.1; (AJ010601) ECF sigma factor [Streptomyces; E=2e-04 swissprot:Q45585; SIGW_BACSU RNA POLYMERASE SIGMA FACTOR SIGW; E=3e-04 COG: BH0263; COG1595 DNA-directed RNA polymerase specialized sigma; E=2e-08 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=3.9e-10 NP_866149.1 PMID: 8108417 PMID: 97052967 best DB hits: BLAST: pir:C70304; 4a-hydroxytetrahydrobiopterin dehydratase (EC 4.2.1.96); E=2e-10 ddbj:BAA97373.1; (AB023044) gene_id:MWD22.5~similar to unknown; E=5e-10 swissprot:P43335; PHS_PSEAE PTERIN-4-ALPHA-CARBINOLAMINE; E=4e-09 COG: aq_049; COG2154 Pterin-4a-carbinolamine dehydratase; E=2e-11 PFAM: PF01329; Pterin 4 alpha carbinolamine dehydr; E=1.2e-18 NP_866153.1 PMID: 7972002 PMID: 7768872 best DB hits: BLAST: ddbj:BAB06601.1; (AP001517) 3-oxoacyl-(acyl-carrier protein); E=9e-37 pir:S77464; 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); E=1e-34 pir:G69842; 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); E=1e-34 COG: BH2882; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; E=8e-38 PFAM: PF00109; Beta-ketoacyl synthase, N-ter; E=3.2e-10 NP_866156.1 PMID: 8829543 PMID: 2678100 best DB hits: BLAST: gb:AAG54908.1; AE005237_4 (AE005237) inner membrane; E=1e-109 swissprot:P38054; YBDE_ECOLI HYPOTHETICAL 114.7 KDA PROTEIN IN; E=1e-109 gb:AAD11749.1; (AF067954) inner membrane protoncation; E=1e-109 COG: ybdE; COG0841 Cation/multidrug efflux pump; E=1e-110 PFAM: PF00873; AcrB/AcrD/AcrF family; E=5.1e-154 NP_866157.1 PMID: 12065505 best DB hits: BLAST: embl:CAC21493.1; (AJ278866) MchE protein [Escherichia coli]; E=0.37 swissprot:P22519; CVAA_ECOLI COLICIN V SECRETION PROTEIN CVAA; E=0.38 pir:E82263; conserved hypothetical protein VC0913 [imported] -; E=0.76 PFAM: PF02221; E1 family; E=0.88 PF00364; Biotin-requiring enzyme; E=0.0054 NP_866160.1 PMID: 8829543 best DB hits: BLAST: gb:AAG09627.1; (AY007258) CztC [Pseudomonas fluorescens]; E=3e-15 pir:JC4698; divalent cation resistant determinant protein C -; E=4e-15 swissprot:P13509; CZCC_ALCEU COBALT-ZINC-CADMIUM RESISTANCE; E=3e-14 COG: PA2522; COG1538 Outer membrane protein; E=8e-13 PFAM: PF02321; Outer membrane efflux protein; E=2.9e-11 NP_866161.1 best DB hits: PFAM: PF00048; Small cytokines (intecrine/chemokine; E=0.2 NP_866163.1 PMID: 8390993 best DB hits: BLAST: pir:T03939; potassium channel protein - maize ----- embl:; E=0.27 pir:T45609; hypothetical protein F13G24.40 - Arabidopsis thaliana; E=0.47 ddbj:BAB09948.1; (AB005249) gene_id:MXM12.8~unknown protein; E=0.47 PFAM: PF00023; Ank repeat; E=2.5e-08 NP_866170.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_866173.1 PMID: 8969205 PMID: 10220172 best DB hits: BLAST: pir:B82755; beta-hexosaminidase precursor XF0847 [imported] -; E=2e-35 swissprot:P96155; HEX1_VIBFU BETA-HEXOSAMINIDASE; E=4e-26 pir:A82301; beta-N-acetylhexosaminidase VC0613 [imported] - Vibrio; E=2e-25 PFAM: PF02838; Glycosyl hydrolase 20,; E=0.00019 PF00728; Glycosyl hydrolase 20,; E=5.3e-07 NP_866174.1 PMID: 8652595 PMID: 10835424 best DB hits: BLAST: swissprot:P96169; SGLT_VIBPA SODIUMGLUCOSE COTRANSPORTER; E=5e-24 ddbj:BAA11215.1; (D78137) Na+glucose symporter [Vibrio; E=6e-22 ddbj:BAA22950.1; (AB008225) Na+-glucose cotransporter type 1; E=4e-16 COG: sll1087; COG0591 Na+/proline, Na+/panthothenate symporters and; E=3e-13 yidK; COG0591 Na+/proline, Na+/panthothenate symporters and related; E=1e-06 MTH1856; COG0591 Na+/proline, Na+/panthothenate symporters and; E=1e-06 PFAM: PF00474; Sodium:solute symporter family; E=0.0075 NP_866175.1 PMID: 99429847 best DB hits: BLAST: embl:CAA06738.1; (AJ005843) cryptic haloacid dehalogenase 1; E=2e-31 embl:CAB61854.1; (AL133252) dehalogenase [Streptomyces; E=3e-24 pdb:1ZRN; Intermediate Structure Of L-2-Haloacid Dehalogenase; E=7e-20 COG: BH3587; COG0546 Predicted phosphatases; E=2e-09 PA0810; COG1011 Predicted hydrolases of the HAD superfamily; E=7e-07 DR2613; COG0637 Predicted phosphatase/phosphohexomutase; E=6e-06 PFAM: PF00702; haloacid dehalogenase-like hydrolas; E=8.2e-21 NP_866176.1 best DB hits: BLAST: gb:AAD54003.1; AF088856_2 (AF088856) hypothetical protein; E=4e-20 embl:CAB69777.1; (AL137187) tetR-family transcriptional; E=6e-16 embl:CAB93063.1; (AL357432) transcriptional regulator; E=2e-14 COG: VCA0586; COG1309 Transcriptional regulator; E=1e-11 PFAM: PF00440; Bacterial regulatory proteins, tetR; E=5.4e-11 NP_866179.1 best DB hits: BLAST: pir:T01022; hypothetical protein YUP8H12R.5 - Arabidopsis thaliana; E=0.028 pir:T01023; hypothetical protein YUP8H12R.6 - Arabidopsis thaliana; E=0.032 pir:T01021; hypothetical protein YUP8H12R.4 - Arabidopsis thaliana; E=0.036 NP_866180.1 PMID: 10498721 PMID: 8755891 best DB hits: BLAST: gb:AAF34252.1; AF168003_7 (AF168003) asparagine; E=1e-100 gb:AAF24002.1; (AF035937) WbpS [Pseudomonas aeruginosa]; E=9e-94 ddbj:BAA33606.1; (AB012956) probable asparagine synthetase; E=1e-89 COG: BS_asnB; COG0367 Asparagine synthase (glutamine-hydrolyzing); E=2e-86 PFAM: PF00310; Glutamine amidotransferases clas; E=5.6e-21 PF00733; Asparagine synthase; E=1.5e-51 NP_866181.1 PMID: 7968456 best DB hits: BLAST: gb:AAG20419.1; (AE005114) hemolysin protein; Hlp [Halobacterium; E=3e-25 pir:F72326; hemolysin-related protein - Thermotoga maritima (strain; E=9e-25 pir:H71299; probable hemolysin (tlyC) - syphilis spirochete -----; E=6e-23 COG: VNG2308G; COG1253 Uncharacterized CBS domain-containing proteins; E=3e-26 PFAM: PF00571; CBS domain; E=7e-06 NP_866182.1 PMID: 8905232 best DB hits: BLAST: swissprot:P77385; YBEY_ECOLI HYPOTHETICAL 17.5 KDA PROTEIN IN; E=4e-06 embl:CAB62265.1; (AJ249116) YbeY protein [Salmonella typhimurium]; E=4e-06 gb:AAG54992.1; AE005245_1 (AE005245) orf, hypothetical protein; E=5e-06 COG: ybeY; COG0319 Predicted metal-dependent hydrolase; E=4e-07 PFAM: PF02130; Uncharacterized protein family UPF00; E=6.9e-14 NP_866183.1 PMID: 8969508 best DB hits: BLAST: swissprot:P46344; YQFF_BACSU HYPOTHETICAL 79.2 KD PROTEIN IN; E=1e-58 ddbj:BAB05081.1; (AP001511) BH1362~unknown conserved protein; E=4e-54 pir:E72244; conserved hypothetical protein - Thermotoga maritima; E=1e-48 COG: BS_yqfF; COG1480 Predicted membrane-associated HD superfamily; E=1e-59 PFAM: PF01966; HD domain; E=5.3e-21 NP_866184.1 PMID: 8444794 best DB hits: BLAST: swissprot:P46343; PHOL_BACSU PHOH-LIKE PROTEIN ----- pir:; E=1e-70 ddbj:BAB05080.1; (AP001511) phosphate starvation-induced protein; E=4e-69 embl:CAA12155.1; (AJ224829) ORF4 [Bacillus megaterium]; E=8e-69 COG: BS_phoH; COG1702 Phosphate starvation-inducible protein PhoH,; E=1e-71 ybeZ; COG1702 Phosphate starvation-inducible protein PhoH, predicted; E=4e-68 Rv2368c; COG1702 Phosphate starvation-inducible protein PhoH,; E=2e-65 PFAM: PF02562; PhoH-like protein; E=1.8e-133 NP_866185.1 PMID: 2995358 PMID: 8557688 PMID: 9083091 best DB hits: BLAST: gb:AAB61972.1; (U60832) CDP-diglyceride synthetase [Haemophilus; E=2e-19 swissprot:P44937; CDSA_HAEIN PHOSPHATIDATE CYTIDYLYLTRANSFERASE; E=3e-19 gb:AAB61967.1; (U60831) CDP diglyceride synthetase [Haemophilus; E=3e-19 COG: HI0919; COG0575 CDP-diglyceride synthetase; E=2e-20 PFAM: PF01148; Phosphatidate cytidylyltransfe; E=5.6e-15 NP_866186.1 PMID: 7499381 best DB hits: BLAST: swissprot:P80864; TPX_BACSU PROBABLE THIOL PEROXIDASE; E=2e-39 swissprot:P31307; TPX_STRPA PROBABLE THIOL PEROXIDASE -----; E=4e-33 swissprot:P42366; TPX_STRGC PROBABLE THIOL PEROXIDASE -----; E=5e-33 COG: BS_ytgI; COG2077 Thiol peroxidase; E=1e-40 APE2125; COG1225 Peroxiredoxins; E=1e-08 DR2242; COG0450 Thiol - alkyl hydroperoxide reductases; E=1e-05 PFAM: PF00578; AhpC/TSA family; E=9.5e-20 NP_866189.1 PMID: 2544549 best DB hits: BLAST: pir:S72590; hypothetical protein B1937_F1_25 - Mycobacterium leprae; E=9e-10 pir:A70586; hypothetical protein Rv2362c - Mycobacterium; E=2e-09 ddbj:BAB05088.1; (AP001511) BH1369~unknown conserved protein; E=3e-08 COG: Rv2362c; COG1381 Recombinational DNA repair protein; E=2e-10 PFAM: PF02565; Recombination protein O; E=3.8e-20 NP_866192.1 PMID: 8953720 best DB hits: BLAST: embl:CAA57770.2; (X82326) malate permease [Oenococcus oeni]; E=0.16 pir:H72378; conserved hypothetical protein - Thermotoga maritima; E=0.19 NP_866196.1 PMID: 8098035 PMID: 7853400 PMID: 8081752 best DB hits: BLAST: swissprot:Q07607; MOSA_RHIME MOSA PROTEIN ----- pir: B53308; E=2e-29 embl:CAC24079.1; (AL512981) ORF-c25_010 [Sulfolobus solfataricus]; E=7e-29 pir:S56523; dihydrodipicolinate synthase homolog yjhH - Escherichia; E=1e-28 COG: yjhH; COG0329 Dihydrodipicolinate synthetase/N-acetylneuraminate; E=1e-29 PFAM: PF00701; Dihydrodipicolinate synthetase famil; E=2.2e-57 NP_866197.1 PMID: 9371463 best DB hits: BLAST: pir:D69100; probable protein disulfide-isomerase (EC 5.3.4.1); E=5e-08 gb:AAG20098.1; (AE005089) Vng1905c [Halobacterium sp. NRC-1]; E=1e-04 pir:B70456; thioredoxin - Aquifex aeolicus ----- gb:; E=6e-04 COG: MTH1745; COG0526 Thiol-disulfide isomerase and thioredoxins; E=5e-09 VNG1905C; COG1331 Highly conserved protein containing a thioredoxin; E=1e-05 aq_1811; COG0526 Thiol-disulfide isomerase and thioredoxins; E=6e-05 NP_866201.1 PMID: 21128732 best DB hits: BLAST: pir:H81795; Holliday junction DNA helicase NMA2221 [imported] -; E=6e-11 pir:B81218; Holliday junction DNA helicase RuvA NMB0265 [imported] -; E=1e-10 pir:D81662; Holliday junction DNA helicase RuvA TC0788 [imported] -; E=8e-09 COG: NMB0265; COG0632 Holliday junction resolvasome DNA-binding subunit; E=1e-11 PFAM: PF02505; Methyl-coenzyme M reductase op; E=0.16 PF01330; RuvA N terminal domain; E=4.3e-05 PF02904; RuvA central domain II; E=1.1e-06 NP_866202.1 Regulates rRNA biosynthesis by transcriptional antitermination NP_866203.1 best DB hits: BLAST: swissprot:O32113; YUTM_BACSU HYPOTHETICAL 12.8 KDA PROTEIN IN; E=5e-19 gb:AAD39571.1; AC007067_11 (AC007067) T10O24.11 [Arabidopsis; E=7e-18 swissprot:O67709; YI57_AQUAE HYPOTHETICAL PROTEIN AQ_1857 -----; E=1e-17 COG: BS_yutM; COG0316 Uncharacterized ACR; E=5e-20 PFAM: PF01521; HesB-like domain; E=8.4e-43 NP_866206.1 best DB hits: BLAST: embl:CAB82869.1; (AJ276673) hypothetical protein [Streptomyces; E=8e-08 ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=1e-07 gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=5e-07 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=1e-08 PFAM: PF01408; Oxidoreductase, NAD-bin; E=9.6e-18 PF02894; Oxidoreductase, C-termi; E=0.086 NP_866207.1 best DB hits: PFAM: PF00034; Cytochrome c; E=0.003 NP_866210.1 best DB hits: BLAST: pir:D83447; conserved hypothetical protein PA1574 [imported] -; E=5e-21 swissprot:P36768; YAIE_ECOLI HYPOTHETICAL 10.2 KD PROTEIN IN; E=2e-15 pir:A82395; conserved hypothetical protein VCA0970 [imported] -; E=4e-11 COG: PA1574; COG3123 Uncharacterized BCR; E=5e-22 NP_866211.1 best DB hits: BLAST: gb:AAC38670.2; (AF062345) perosamine synthetase; LpsC; E=9e-10 gb:AAB81626.1; (AF025396) probable perosamine synthetase [Vibrio; E=1e-08 gb:AAD28492.1; AF145039_4 (AF145039) aminotransferase spcS2; E=5e-08 COG: PAB0774; COG0399 Predicted pyridoxal phosphate-dependent enzyme; E=1e-08 PFAM: PF01041; DegT/DnrJ/EryC1/StrS family; E=0.099 NP_866212.1 best DB hits: BLAST: ddbj:BAB04948.1; (AP001511) BH1229~unknown conserved protein; E=3e-04 gb:AAK02312.1; (AE006057) YajC [Pasteurella multocida]; E=3e-04 pir:D72325; hypothetical protein - Thermotoga maritima (strain MSB8); E=5e-04 COG: BH1229; COG1862 Preprotein translocase subunit YajC; E=3e-05 PFAM: PF02699; Uncharacterized secreted proteins, Y; E=5.5e-17 NP_866213.1 PMID: 10910347 best DB hits: BLAST: pir:A82832; protein-export membrane protein XF0225 [imported] -; E=8e-45 swissprot:Q55610; SECD_SYNY3 PROTEIN-EXPORT MEMBRANE PROTEIN SECD; E=1e-44 swissprot:O67102; SECD_AQUAE PROTEIN-EXPORT MEMBRANE PROTEIN SECD; E=3e-42 COG: XF0225; COG0342 Preprotein translocase subunit SecD; E=7e-46 PFAM: PF02355; Protein export membrane protein; E=0.012 PF00654; Voltage gated chloride channel; E=0.18 PF02355; Protein export membrane protein; E=6.6e-66 NP_866215.1 PMID: 7910580 PMID: 2303452 best DB hits: BLAST: embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=3e-41 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=3e-41 pdb:1E2S; P Chain P, Crystal Structure Of An Arylsulfatase A; E=3e-40 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=6e-29 HI1246; COG1368 Phosphoglycerol transferase and related proteins,; E=4e-05 VNG0061C; COG3119 Arylsulfatase A and related enzymes; E=5e-04 PFAM: PF00884; Sulfatase; E=2.4e-48 NP_866219.1 PMID: 11679351 NP_866223.1 PMID: 2562384 best DB hits: BLAST: pir:A83632; cytochrome c oxidase, subunit III PA0108 [imported] -; E=6e-04 gb:AAG19157.1; (AE005013) cytochrome c oxidase subunit III; CoxC; E=0.007 gb:AAC09434.1; (M68929) coxIII [Marchantia polymorpha]; E=0.059 COG: PA0108; COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit; E=6e-05 VNG0662G; COG1845 Heme/copper-type cytochrome/quinol oxidase,; E=7e-04 PFAM: PF00510; Cytochrome c oxidase subunit III; E=0.55 NP_866227.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate NP_866229.1 best DB hits: BLAST: pir:D83599; conserved hypothetical protein PA0380 [imported] -; E=5e-07 pir:T35489; hypothetical protein SC6E10.02 - Streptomyces; E=2e-06 gb:AAC08230.1; (U38804) ORF71 [Porphyra purpurea]; E=1e-05 COG: PA0380; COG2104 Uncharacterized ACR, possibly involved in thiamine; E=5e-08 ssr0102; COG2104 Uncharacterized ACR, possibly involved in; E=0.001 thiS; COG2104 Uncharacterized ACR, possibly involved in thiamine; E=0.006 PFAM: PF02597; Uncharacterized ACR, COG2104; E=2e-11 NP_866230.1 best DB hits: BLAST: pir:T34928; hypothetical protein SC3F9.06 SC3F9.06 - Streptomyces; E=1e-112 ddbj:BAB04968.1; (AP001511) BH1249~unknown conserved protein; E=2e-10 swissprot:P54724; YFIH_BACSU HYPOTHETICAL 34.8 KD PROTEIN IN GLVBC; E=2e-08 NP_866232.1 best DB hits: BLAST: embl:CAB16799.1; (Z99707) protein [Arabidopsis thaliana]; E=7e-05 swissprot:Q58622; YC25_METJA HYPOTHETICAL PROTEIN MJ1225 -----; E=2e-04 pir:E82251; inosine monophosphate dehydrogenase-related protein; E=3e-04 COG: MJ1225; COG0517 CBS domains; E=2e-05 MTH126; COG2524 Predicted transcriptional regulator with C-terminal; E=8e-05 aq_2023_2; COG0517 CBS domains; E=1e-04 PFAM: PF00571; CBS domain; E=1.6e-11 NP_866238.1 best DB hits: BLAST: gb:AAB89850.1; (AE001008) conserved hypothetical protein; E=0.24 NP_866239.1 best DB hits: BLAST: gb:AAF82144.1; AC034256_8 (AC034256) Contains similarity to F-box; E=8e-04 ddbj:BAB21785.1; (AB051481) KIAA1694 protein [Homo sapiens]; E=0.40 NP_866240.1 PMID: 1657895 PMID: 1885548 PMID: 1758493 PMID: 9442895 best DB hits: BLAST: pir:H82149; crossover junction endodeoxyribonuclease RuvC VC1847; E=6e-19 swissprot:O83530; RUVC_TREPA CROSSOVER JUNCTION; E=8e-19 pir:F81271; crossover junction endodeoxyribonuclease (EC 3.1.22.4); E=2e-16 COG: VC1847; COG0817 Holliday junction resolvasome endonuclease subunit; E=6e-20 PFAM: PF02075; Crossover junction endodeoxyribonucl; E=1.1e-46 NP_866241.1 PMID: 2014166 PMID: 1864365 best DB hits: BLAST: gb:AAK03029.1; (AE006134) CysS [Pasteurella multocida]; E=5e-91 swissprot:Q9KGF4; SYC_BACHD CYSTEINYL-TRNA SYNTHETASE; E=2e-89 swissprot:O58370; SYC_PYRHO CYSTEINYL-TRNA SYNTHETASE; E=3e-88 COG: BH0111; COG0215 Cysteinyl-tRNA synthetase; E=2e-90 PFAM: PF01406; tRNA synthetases class I (C); E=1.8e-122 NP_866244.1 best DB hits: PFAM: PF01336; OB-fold nucleic acid binding domain; E=0.015 NP_866245.1 PMID: 90231432 PMID: 94293754 best DB hits: BLAST: swissprot:P48859; CSPF_STRCO COLD SHOCK PROTEIN SCOF -----; E=8e-10 embl:CAB76978.1; (AL159178) cold-shock protein [Streptomyces; E=2e-09 pir:T34593; cold-shock domain protein - Streptomyces coelicolor; E=1e-08 COG: XF2352; COG1278 Cold shock proteins; E=2e-08 PFAM: PF00313; 'Cold-shock' DNA-binding domain; E=2.2e-19 NP_866247.1 best DB hits: PFAM: PF00515; TPR Domain; E=0.00063 NP_866249.1 best DB hits: BLAST: pir:S31926; myosin IB heavy chain, brush border - chicken -----; E=0.12 NP_866250.1 PMID: 2898203 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_866253.1 PMID: 7528875 best DB hits: BLAST: ddbj:BAB04561.1; (AP001510) BH0842~unknown conserved protein; E=2e-09 embl:CAB56146.1; (AL117669) large secreted protein; E=7e-07 embl:CAB91126.1; (AL355913) hypothetical protein SC5H4.14; E=0.17 NP_866254.1 PMID: 10509949 best DB hits: BLAST: pir:B75555; probable lipaseesterase - Deinococcus radiodurans; E=6e-08 swissprot:Q04457; EST1_CAEEL GUT ESTERASE PRECURSOR (NON-SPECIFIC; E=9e-06 pir:T32061; gut-specific carboxylesterase ges-1 - Caenorhabditis; E=9e-06 COG: DR0133; COG0657 Acetyl esterase; E=6e-09 NP_866258.1 best DB hits: BLAST: embl:CAB45032.1; (AL078635) large multi-functional; E=6e-13 embl:CAB58265.1; (AL121849) multi-domain protein; E=3e-10 NP_866260.1 PMID: 11823852 best DB hits: BLAST: gb:AAK02297.1; (AE006055) unknown [Pasteurella multocida]; E=0.011 pir:E83286; conserved hypothetical protein PA2864 [imported] -; E=0.018 pir:B81002; conserved hypothetical protein NMB2140 [imported] -; E=0.033 COG: PA2864; COG2259 Predicted membrane protein; E=0.002 NMB2140; COG3229 Uncharacterized membrane protein; E=0.003 Rv3005c; COG2259 Predicted membrane protein; E=0.010 NP_866261.1 PMID: 97000351 best DB hits: BLAST: embl:CAB61593.1; (AL133210) hypothetical protein SCG11A.12; E=2e-59 pir:T35546; hypothetical protein SC6G3.02 - Streptomyces coelicolor; E=2e-36 NP_866262.1 PMID: 97000351 best DB hits: BLAST: embl:CAB61594.1; (AL133210) hypothetical protein SCG11A.13; E=1e-63 pir:T35547; hypothetical protein SC6G3.03 - Streptomyces coelicolor; E=1e-25 NP_866263.1 PMID: 97000351 best DB hits: BLAST: embl:CAB61595.1; (AL133210) hypothetical protein SCG11A.14; E=3e-96 gb:AAG57184.1; AE005439_3 (AE005439) orf, hypothetical protein; E=1e-69 swissprot:P33348; YEHL_ECOLI HYPOTHETICAL 42.4 KD PROTEIN IN; E=3e-69 COG: yehL; COG0714 MoxR-like ATPases; E=3e-70 NP_866264.1 best DB hits: BLAST: pir:T35548; hypothetical protein SC6G3.04 - Streptomyces coelicolor; E=1e-145 embl:CAB61596.1; (AL133210) hypothetical protein SCG11A.15; E=5e-93 swissprot:P33352; YEHP_ECOLI HYPOTHETICAL 42.1 KD PROTEIN IN; E=5e-27 NP_866265.1 best DB hits: BLAST: pir:T35549; hypothetical protein SC6G3.05 - Streptomyces coelicolor; E=4e-13 NP_866267.1 best DB hits: BLAST: pir:S77109; hypothetical protein slr1870 - Synechocystis sp. (strain; E=1e-63 pir:D81437; hypothetical protein Cj0189c [imported] - Campylobacter; E=2e-24 pir:C71266; conserved hypothetical protein TP0894 - syphilis; E=8e-20 COG: slr1870; COG1432 Uncharacterized ACR; E=1e-64 NP_866270.1 PMID: 95126562 PMID: 94254732 PMID: 93155125 best DB hits: BLAST: embl:CAC03633.1; (AL391338) TetR-family transcriptional; E=2e-14 pir:E70831; probable transcriptional regulator Rv0452 - Mycobacterium; E=2e-10 pir:E75525; transcriptional regulator, TetR family - Deinococcus; E=8e-08 COG: Rv0452; COG1309 Transcriptional regulator; E=2e-11 PFAM: PF00440; Bacterial regulatory proteins; E=9e-14 NP_866271.1 PMID: 95260797 PMID: 81247357 best DB hits: BLAST: gb:AAG19016.1; (AE005001) probable oxidoreductase; YajO1; E=8e-35 pir:C70863; hypothetical protein Rv2263 - Mycobacterium tuberculosis; E=2e-32 pir:H70829; hypothetical protein Rv0439c - Mycobacterium; E=7e-32 COG: VNG0479G; COG1028 Dehydrogenases with different specificities; E=8e-36 Rv2263; COG1028 Dehydrogenases with different specificities (related; E=1e-33 Rv0439c; COG1028 Dehydrogenases with different specificities; E=7e-33 PFAM: PF00106; short chain dehydrogenase; E=6.1e-26 NP_866273.1 PMID: 11410353 PMID: 10627033 PMID: 10496921 PMID: 9001395 best DB hits: BLAST: pir:G71532; probable threoninetyrosine-specific protein kinase (EC; E=1e-25 gb:AAF73573.1; (AE002326) serinethreonine protein kinase; E=5e-22 pir:T36501; probable serinethreonine protein kinase - Streptomyces; E=3e-20 COG: CT301_1; COG0515 Serine/threonine protein kinases; E=1e-26 PFAM: PF02473; Oxygen-independent Coproporphy; E=0.8 PF00069; Protein kinase domain; E=5.9e-29 NP_866276.1 PMID: 11466286 PMID: 95337427 PMID: 95218635 best DB hits: BLAST: pir:T36945; hypothetical protein SCJ1.12 - Streptomyces coelicolor; E=0.27 swissprot:P95014; AROK_MYCTU SHIKIMATE KINASE (SK) -----; E=0.40 PFAM: PF01202; Shikimate kinase; E=0.52 NP_866279.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate NP_866280.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors NP_866281.1 PMID: 8905231 best DB hits: BLAST: pir:A83058; conserved hypothetical protein PA4701 [imported] -; E=5e-90 gb:AAF00966.1; AF183408_14 (AF183408) Uma3 [Microcystis; E=1e-87 pir:S76584; hypothetical protein - Synechocystis sp. (strain PCC; E=1e-68 COG: PA4701_1; COG2187 Uncharacterized BCR; E=3e-60 PA4701_2; COG0645 Predicted kinase; E=1e-24 PFAM: PF00277; Serum amyloid A protein; E=0.24 PF01583; Adenylylsulfate kinase; E=0.43 NP_866284.1 PMID: 7542800 best DB hits: BLAST: pir:H82491; conserved hypothetical protein VCA0159 [imported] -; E=2e-29 pir:G64029; hypothetical protein HI1426 - Haemophilus influenzae; E=1e-20 swissprot:P44195; YDAA_HAEIN HYPOTHETICAL PROTEIN HI1426; E=1e-20 COG: VCA0159; COG0589 Universal stress protein UspA and related; E=2e-30 PFAM: PF00582; Universal stress protein family; E=0.0026 NP_866285.1 best DB hits: BLAST: pir:A69220; conserved hypothetical protein MTH898 - Methanobacterium; E=6e-10 gb:AAK05956.1; AE006416_1 (AE006416) conserved hypothetical; E=8e-07 pir:A69233; conserved hypothetical protein MTH993 - Methanobacterium; E=3e-06 COG: MTH898; COG0589 Universal stress protein UspA and related; E=6e-11 PFAM: PF00582; Universal stress protein family; E=5.4e-13 NP_866288.1 PMID: 90319059 PMID: 94089375 best DB hits: BLAST: ddbj:BAA13425.1; (D87664) DNA polymerase X [Thermus; E=1e-09 embl:CAC11891.1; (AL445065) DNA-dependent DNA polymerase X; E=1e-08 pir:G69172; DNA-dependent DNA polymerase X - Methanobacterium; E=6e-08 COG: Ta0758_1; COG1796 DNA polymerase IV (family X); E=1e-09 NP_866290.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors NP_866293.1 best DB hits: BLAST: embl:CAB54060.1; (AJ245436) hypothetical protein, 91.9 kD; E=0.19 pir:A82290; clpB protein VC0711 [imported] - Vibrio cholerae (group; E=0.55 embl:CAB93414.1; (AL357524) integrase [Streptomyces; E=0.64 NP_866295.1 PMID: 8346225 best DB hits: BLAST: swissprot:Q06067; ATOS_ECOLI SENSOR PROTEIN ATOS ----- pir:; E=1e-26 gb:AAF33505.1; (AF170176) Salmonella typhimurium sensor protein; E=3e-25 gb:AAG59806.1; AF305914_1 (AF305914) HydH [Klebsiella oxytoca]; E=1e-24 COG: atoS_3; COG0642 Sensory transduction histidine kinases; E=1e-27 PFAM: PF00072; Response regulator receiver doma; E=2.2e-12 PF00989; PAS domain; E=1.6e-06 PF00785; PAC motif; E=0.00084 NP_866296.1 PMID: 2046550 PMID: 1766374 best DB hits: BLAST: swissprot:P26489; FIXL_AZOCA SENSOR PROTEIN FIXL ----- pir:; E=2e-48 swissprot:P23222; FIXL_BRAJA SENSOR PROTEIN FIXL ----- pir:; E=8e-45 swissprot:P10955; FIXL_RHIME SENSOR PROTEIN FIXL ----- pir:; E=2e-43 COG: BS_ykrQ_3; COG0642 Sensory transduction histidine kinases; E=3e-27 PFAM: PF00989; PAS domain; E=1.3e-13 PF00785; PAC motif; E=0.052 PF00512; His Kinase A (phosphoacceptor) doma; E=4.1e-09 NP_866297.1 PMID: 3003689 PMID: 2997779 best DB hits: BLAST: pdb:1SRR; A Chain A, Crystal Structure Of A Phosphatase Resistant; E=3e-12 swissprot:P06628; SP0F_BACSU SPORULATION INITIATION; E=5e-12 pdb:1F51; E Chain E, A Transient Interaction Between Two; E=8e-12 COG: BS_spo0F; COG0784 CheY-like receiver domains; E=4e-13 PA4381; COG0745 Response regulators consisting of a CheY-like; E=5e-11 rcsC_3; COG0784 CheY-like receiver domains; E=5e-11 PFAM: PF00072; Response regulator receiver doma; E=2.5e-23 PF02310; B12 binding domain; E=0.14 PF00072; Response regulator receiver doma; E=4.8e-08 NP_866298.1 PMID: 9784136 best DB hits: BLAST: pir:H71494; probable thiol-disulfide interchange protein dsbD; E=0.009 pir:H72034; thiol-disulfide interchange protein dsbD [imported] -; E=0.084 pir:G81503; thiol-disulfide interchange protein DSbD homolog CP1086; E=0.084 COG: CT595; COG0526 Thiol-disulfide isomerase and thioredoxins; E=8e-04 NP_866301.1 best DB hits: BLAST: ddbj:BAB06427.1; (AP001516) ABC transporter [Bacillus halodurans]; E=3e-69 pir:H69086; ABC transporter - Methanobacterium thermoautotrophicum; E=2e-66 pir:D83014; conserved hypothetical protein PA5065 [imported] -; E=6e-59 COG: BH2708; COG0661 Predicted unusual protein kinase; E=3e-70 NP_866305.1 PMID: 2546860 best DB hits: BLAST: pir:JS0237; hypothetical 48K protein - Pseudomonas cepacia -----; E=2e-33 embl:CAA65720.1; (X96995) transposase IS1354 [Methylobacterium; E=7e-13 swissprot:P35880; TRA1_LACHE TRANSPOSASE FOR INSERTION SEQUENCE; E=1e-11 COG: Rv3431c; COG3328 Predicted transposase; E=4e-12 PFAM: PF00872; Transposase, Mutator family; E=1.5e-05 NP_866308.1 PMID: 99231861 best DB hits: BLAST: swissprot:P18501; HESB_ANASP HESB PROTEIN ----- pir: S11901; E=9e-08 swissprot:P46051; HEB1_ANAVA HESB PROTEIN, HETEROCYST -----; E=1e-07 gb:AAF82645.1; AF167538_12 (AF167538) HesB [Trichodesmium sp.; E=2e-07 COG: NMB1381; COG0316 Uncharacterized ACR; E=5e-07 PFAM: PF01521; HesB-like domain; E=4.9e-21 NP_866310.1 PMID: 7910580 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=4e-27 swissprot:P50428; ARSA_MOUSE ARYLSULFATASE A PRECURSOR (ASA); E=4e-22 pdb:1E2S; P Chain P, Crystal Structure Of An Arylsulfatase A; E=6e-22 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=2e-21 PFAM: PF00884; Sulfatase; E=8.8e-25 NP_866311.1 PMID: 10699374 best DB hits: BLAST: gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=2e-33 ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=1e-32 pdb:1E2S; P Chain P, Crystal Structure Of An Arylsulfatase A; E=4e-31 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=1e-28 PFAM: PF00884; Sulfatase; E=8.8e-45 NP_866312.1 best DB hits: BLAST: pir:T03939; potassium channel protein - maize ----- embl:; E=0.001 gb:AAF44358.1; AF198100_5 (AF198100) ORF FPV014 Ankyrin repeat; E=0.002 gb:AAF49551.1; (AE003529) CG5841 gene product [Drosophila; E=0.002 COG: TP0502; COG0666 Ankyrin repeat proteins; E=0.003 PFAM: PF00023; Ank repeat; E=8e-07 NP_866314.1 PMID: 90239044 best DB hits: BLAST: swissprot:O53719; CLPB_MYCTU CLPB PROTEIN ----- pir: C70834; E=0.009 gb:AAD00218.1; (U73653) clpB [Mycobacterium bovis]; E=0.009 swissprot:P53532; CLPB_CORGL CLPB PROTEIN ----- gb: AAB49540.1; E=0.010 COG: Rv0384c; COG0542 ATPases with chaperone activity, ATP-binding domain; E=9e-04 PFAM: PF00225; Kinesin motor domain; E=0.54 NP_866320.1 best DB hits: BLAST: pir:C70893; hypothetical protein Rv1069c - Mycobacterium; E=3e-88 NP_866330.1 PMID: 10531208 best DB hits: BLAST: gb:AAD38020.1; AF148127_1 (AF148127) transposase [Porphyromonas; E=2e-13 ddbj:BAA83477.1; (AB009361) transposase [Porphyromonas; E=3e-13 ddbj:BAA92234.1; (AB031551) transposase [Bacillus subtilis]; E=4e-10 COG: BH0691; COG3385 Predicted transposase; E=4e-10 PFAM: PF01609; Transposase (IS4 family); E=6.2e-08 NP_866334.1 PMID: 2303452 best DB hits: BLAST: embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=1e-46 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=1e-46 pdb:1E2S; P Chain P, Crystal Structure Of An Arylsulfatase A; E=2e-45 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=9e-38 yejM; COG3083 Predicted hydrolase of alkaline phosphatase; E=6e-06 Rv3077; COG3119 Arylsulfatase A and related enzymes; E=1e-04 PFAM: PF00884; Sulfatase; E=3e-48 NP_866337.1 PMID: 12024217 NP_866339.1 best DB hits: BLAST: gb:AAG18661.1; (AE004971) Vng0021h [Halobacterium sp. NRC-1]; E=4e-23 gb:AAG18694.1; (AE004974) Vng0056h [Halobacterium sp. NRC-1]; E=4e-21 pir:T44318; transposase homolog [imported] - Vibrio cholerae -----; E=3e-16 NP_866340.1 best DB hits: BLAST: ddbj:BAA22286.1; (D37918) Reverse transcriptase like protein; E=0.011 ddbj:BAA84894.1; (AB024946) orf59 [Escherichia coli]; E=0.011 swissprot:Q47688; YKFC_ECOLI HYPOTHETICAL 43.2 KDA PROTEIN IN; E=0.016 PFAM: PF00078; Reverse transcriptase (RNA-dependent; E=0.24 NP_866346.1 best DB hits: BLAST: gb:AAK02211.1; (AE006047) unknown [Pasteurella multocida]; E=0.62 swissprot:P44114; YB26_HAEIN HYPOTHETICAL PROTEIN HI1126 -----; E=0.64 NP_866347.1 PMID: 10382966 PMID: 2110920 best DB hits: BLAST: pir:E72574; probable membrane protein APE1877 - Aeropyrum pernix; E=1e-08 pir:G70414; conserved hypothetical protein aq_1327 - Aquifex; E=3e-07 gb:AAG18926.1; (AE004994) Vng0361c [Halobacterium sp. NRC-1]; E=2e-06 COG: APE1877; COG0705 Uncharacterized membrane protein (homolog of; E=1e-09 PFAM: PF01694; Rhomboid family; E=1e-07 NP_866350.1 PMID: 11932238 NP_866352.1 PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=9e-41 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=1e-40 embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=5e-35 COG: aslA; COG3119 Arylsulfatase A and related enzymes; E=3e-28 PAB0793; COG2194 Predicted membrane-associated, metal-dependent; E=0.002 PFAM: PF00884; Sulfatase; E=1.9e-40 NP_866357.1 PMID: 8843436 best DB hits: BLAST: swissprot:Q37893; VG12_BPB03 PRE-NECK APPENDAGE PROTEIN (LATE; E=0.69 NP_866358.1 PMID: 10567266 best DB hits: BLAST: pir:B82062; conserved hypothetical protein VC2554 [imported] -; E=5e-25 gb:AAF12633.1; AE001826_102 (AE001826) hypothetical protein; E=3e-22 pir:A83139; hypothetical protein PA4065 [imported] - Pseudomonas; E=5e-21 COG: VC2554; COG0577 Predicted permease; E=4e-26 PFAM: PF02687; Predicted permease; E=1.3e-16 NP_866359.1 PMID: 10783239 best DB hits: BLAST: swissprot:P75957; LOLD_ECOLI LIPOPROTEIN RELEASING SYSTEM; E=6e-38 ddbj:BAA35937.1; (D90747) Heterocyst maturation protein (devA); E=6e-38 swissprot:O53899; Y986_MYCTU HYPOTHETICAL ABC TRANSPORTER; E=4e-37 COG: Rv0986; COG1136 ABC-type (unclassified) transport system, ATPase; E=4e-38 PA5503; COG1135 Uncharacterized ABC-type transport system ATPase; E=6e-33 PA4594; COG1136 ABC-type (unclassified) transport system, ATPase; E=8e-33 PFAM: PF00005; ABC transporter; E=9.9e-55 NP_866360.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation NP_866361.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group NP_866362.1 PMID: 1356969 best DB hits: BLAST: gb:AAK03155.1; (AE006148) unknown [Pasteurella multocida]; E=6e-39 pir:F65170; hypothetical 58.9K protein (ibpb 3'region) - Escherichia; E=9e-37 gb:AAG58887.1; AE005600_5 (AE005600) transport protein; E=1e-36 COG: yidE; COG2985 Predicted permease; E=8e-38 aq_303; COG1226 Kef-type K+ transport systems, predicted NAD-binding; E=0.003 DR1411; COG0471 Di- and tricarboxylate transporters; E=0.008 PFAM: PF02080; Potassium channel; E=0.067 NP_866363.1 PMID: 10988064 best DB hits: BLAST: gb:AAG10499.1; AF279106_61 (AF279106) predicted cation efflux system; E=5e-95 pir:A83186; probable RND efflux transporter PA3676 [imported] -; E=2e-75 pir:F82829; acriflavin resistance protein XF0243 [imported] - Xylella; E=1e-71 COG: PA3676; COG0841 Cation/multidrug efflux pump; E=2e-76 PFAM: PF00873; AcrB/AcrD/AcrF family; E=6.1e-05 NP_866364.1 PMID: 11206551 best DB hits: BLAST: gb:AAG58620.1; AE005573_3 (AE005573) membrane protein; E=9e-11 swissprot:P37626; YHII_ECOLI HYPOTHETICAL 38.8 KD PROTEIN IN; E=1e-10 pir:G83220; hypothetical protein PA3402 [imported] - Pseudomonas; E=1e-09 COG: yhiI; COG0845 Membrane-fusion protein; E=9e-12 PA2836; COG1566 Multidrug resistance efflux pump; E=2e-04 XF2084; COG0845 Membrane-fusion protein; E=3e-04 PFAM: PF00364; Biotin-requiring enzyme; E=0.14 PF01173; Uncharacterized protein family; E=0.095 PF00529; HlyD family secretion protein; E=2.7e-07 NP_866365.1 PMID: 10049252 best DB hits: BLAST: gb:AAC27752.1; (AF072887) regulator AmrR [Burkholderia; E=2e-04 pir:H83274; probable transcriptional regulator PA2957 [imported] -; E=5e-04 swissprot:Q59431; UIDR_ECOLI UID OPERON REPRESSOR (GUS OPERON; E=0.002 COG: PA2957; COG1309 Transcriptional regulator; E=5e-05 PFAM: PF00440; Bacterial regulatory proteins, tetR; E=1.1e-10 NP_866367.1 PMID: 10937442 best DB hits: BLAST: embl:CAA05166.1; (AJ002065) delta-9 desaturase [Spirulina; E=1e-56 gb:AAD00699.1; (U90417) delta 9 acyl-lipid fatty acid desaturase; E=2e-53 gb:AAB61353.1; (U36390) delta-9 desaturase [Synechococcus sp. PCC; E=4e-53 COG: sll0541; COG1398 Fatty-acid desaturase; E=2e-50 PFAM: PF01069; Fatty acid desaturase; E=1.8e-66 NP_866368.1 PMID: 1761227 best DB hits: BLAST: swissprot:Q9ZJ12; SYK3_SALTY LYSYL-TRNA SYNTHETASE; E=1e-57 swissprot:P03812; SYK3_ECOLI LYSYL-TRNA SYNTHETASE; E=2e-57 pir:S56383; lysine--tRNA ligase (EC 6.1.1.6) genX - Escherichia coli; E=2e-57 COG: yjeA; COG2269 Truncated, possibly inactive Class II lysyl-tRNA; E=2e-58 DR0372; COG1190 Lysyl-tRNA synthetase class II; E=2e-29 PFAM: PF00152; tRNA synthetases class II (D, K a; E=8.7e-07 NP_866369.1 PMID: 3822816 PMID: 1390682 best DB hits: BLAST: pir:T05028; nodulin-26-like protein F13C5.80 - Arabidopsis thaliana; E=2e-47 pir:S01444; nodulin-26 precursor - soybean; E=4e-47 swissprot:P08995; NO26_SOYBN NODULIN-26 (N-26) ----- embl:; E=5e-47 COG: PA4034; COG0580 Glycerol uptake facilitator and related permeases; E=2e-25 PFAM: PF00230; Major intrinsic protein; E=6.6e-52 NP_866370.1 PMID: 10809675 best DB hits: BLAST: gb:AAF72520.1; AF248951_1 (AF248951) mucin-desulfating sulfatase; E=4e-65 gb:AAK03766.1; (AE006204) unknown [Pasteurella multocida]; E=8e-34 gb:AAG58881.1; AE005599_13 (AE005599) sulfatase; E=9e-33 COG: yidJ; COG3119 Arylsulfatase A and related enzymes; E=2e-33 PAB0793; COG2194 Predicted membrane-associated, metal-dependent; E=6e-10 VNG1337C; COG3119 Arylsulfatase A and related enzymes; E=7e-08 PFAM: PF00884; Sulfatase; E=2.4e-75 NP_866371.1 PMID: 11214968 best DB hits: BLAST: embl:CAB61226.1; (Y17305) hypothetical protein [Bacillus; E=0.092 NP_866375.1 PMID: 7916647 PMID: 7788523 best DB hits: BLAST: gb:AAA67647.1; (M87049) o181 [Escherichia coli]; E=1e-22 swissprot:P27863; HEMG_ECOLI PROTOPORPHYRINOGEN OXIDASE (PPO); E=2e-22 pir:S30741; hypothetical protein o181 - Escherichia coli; E=4e-22 COG: hemG; COG0716 Flavodoxins; E=2e-23 PFAM: PF00258; Flavodoxin; E=0.00015 NP_866377.1 PMID: 8188606 PMID: 8188605 best DB hits: BLAST: gb:AAK04193.1; AE006248_1 (AE006248) cadmium efflux ATPase; E=6e-74 pir:T36946; probable cation-transporting ATPase - Streptomyces; E=3e-73 ddbj:BAB07755.1; (AP001520) cadmium-transporting ATPase [Bacillus; E=4e-62 COG: BH4036; COG2217 Cation transport ATPases; E=4e-63 PFAM: PF00122; E1-E2 ATPase; E=9.5e-42 PF00702; haloacid dehalogenase-like hydro; E=2.3e-15 NP_866379.1 PMID: 8905231 PMID: 92082464 PMID: 93356744 best DB hits: BLAST: pir:S77094; glycogen operon protein (EC 3.2.1.-) glgX-2 -; E=1e-125 pir:S74546; glycogen operon protein (EC 3.2.1.-) glgX-1 -; E=1e-124 pir:S73088; glycogen operon protein glgX (EC 3.2.1.-) - Sulfolobus; E=1e-113 COG: slr1857; COG1523 Pullulanase and related glycosidases; E=1e-126 DR0464; COG0296 1,4-alpha-glucan branching enzyme; E=7e-17 DR0405; COG1523 Pullulanase and related glycosidases; E=8e-15 PFAM: PF02922; Isoamylase N-terminal domain; E=6.7e-23 PF00128; Alpha amylase, catalytic domai; E=3.3e-17 NP_866384.1 best DB hits: BLAST: pir:S76896; hypothetical protein - Synechocystis sp. (strain PCC; E=0.0 gb:AAK05600.1; AE006381_1 (AE006381) phosphoketolase [Lactococcus; E=0.0 embl:CAB62746.1; (AL133424) hypothetical protein SCF56.01c; E=0.0 COG: slr0453; COG0021 Transketolase; E=0.0 NP_866385.1 best DB hits: BLAST: embl:CAC10115.1; (AL442165) mutase [Streptomyces; E=5e-37 embl:CAB61320.1; (AL132997) phosphatase [Streptomyces; E=2e-27 pir:G70595; probable entD protein - Mycobacterium tuberculosis; E=6e-21 COG: Rv3214; COG0406 Phosphoglycerate mutase/fructose-2,6-bisphosphatase; E=6e-22 TP0168; COG0588 Phosphoglycerate mutase 1; E=2e-05 aq_1990; COG0406 Phosphoglycerate mutase/fructose-2,6-bisphosphatase; E=6e-05 PFAM: PF00300; Phosphoglycerate mutase; E=6e-19 NP_866386.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit NP_866387.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane NP_866388.1 PMID: 9425287 best DB hits: BLAST: gb:AAC38051.1; (AF028006) ATP synthase gene 1 [Methanosarcina; E=2e-18 NP_866389.1 PMID: 9425287 best DB hits: BLAST: gb:AAC38052.1; (AF028006) unknown [Methanosarcina barkeri]; E=0.49 NP_866390.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 NP_866391.2 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0 NP_866392.1 PMID: 9425287 best DB hits: BLAST: gb:AAC38055.1; (AF028006) ATP synthase b subunit [Methanosarcina; E=2e-25 ddbj:BAA23684.1; (AB006151) proton-translocating ATPase, b; E=2e-05 swissprot:P21904; ATPF_PROMO ATP SYNTHASE B CHAIN, SODIUM ION; E=5e-04 COG: UU135; COG0711 F0F1-type ATP synthase b subunit; E=1e-04 PFAM: PF00430; ATP synthase B/B' CF(0); E=6.3e-12 NP_866393.2 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit NP_866394.1 PMID: 9425287 best DB hits: BLAST: gb:AAC38058.1; (AF028006) ATP synthase gamma subunit C-terminus; E=7e-27 gb:AAC38057.1; (AF028006) ATP synthase gamma subunit N-terminus; E=1e-13 swissprot:P00837; ATPG_ECOLI ATP SYNTHASE GAMMA CHAIN -----; E=2e-13 COG: atpG; COG0224 F0F1-type ATP synthase gamma subunit; E=2e-14 PFAM: PF00231; ATP synthase; E=3.3e-07 NP_866398.1 PMID: 12004073 NP_866399.1 PMID: 7704254 best DB hits: BLAST: swissprot:P42243; YCBK_BACSU HYPOTHETICAL 34.0 KD PROTEIN IN; E=6e-13 pir:B75194; hypothetical protein PAB0040 - Pyrococcus abyssi (strain; E=1e-06 swissprot:O31540; YETK_BACSU HYPOTHETICAL 35.8 KD PROTEIN IN; E=2e-06 COG: BS_ycbK; COG0697 Predicted permeases; E=5e-14 PFAM: PF00892; Integral membrane protein DUF6; E=5.5e-10 NP_866401.1 PMID: 86039802 PMID: 97439408 best DB hits: BLAST: swissprot:Q9ZLH2; RNC_HELPJ RIBONUCLEASE III (RNASE III) -----; E=3e-26 pir:F64602; ribonuclease III - Helicobacter pylori (strain 26695); E=3e-26 swissprot:P56118; RNC_HELPY RIBONUCLEASE III (RNASE III); E=3e-26 COG: jhp0607; COG0571 dsRNA-specific ribonuclease; E=3e-27 PFAM: PF00636; RNase3 domain.; E=1.2e-26 PF00035; Double-stranded RNA binding mo; E=3.9e-21 NP_866403.1 PMID: 7934828 PMID: 1806041 PMID: 8665903 PMID: 2503378 best DB hits: BLAST: pir:G82759; hypothetical protein XF0820 [imported] - Xylella; E=5e-18 ddbj:BAA31158.1; (AB015725) aminopeptidase [Aeromonas caviae]; E=5e-11 ddbj:BAB07580.1; (AP001520) aminopeptidase [Bacillus halodurans]; E=1e-10 COG: XF0820; COG2234 Predicted aminopeptidases; E=5e-19 PFAM: PF02225; PA domain; E=0.0063 PF00595; PDZ domain (Also known as DHR o; E=1.1e-07 NP_866404.1 PMID: 12093901 NP_866406.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis NP_866407.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis NP_866408.1 PMID: 8905231 best DB hits: BLAST: pir:S76068; hypothetical protein - Synechocystis sp. (strain PCC; E=3e-23 pir:H69216; 3-chlorobenzoate-3,4-dioxygenase dyhydrogenase related; E=3e-22 pir:E75096; NADH-dependent dehydrogenase homolog. PAB0775 -; E=9e-16 COG: slr0338; COG0673 Predicted dehydrogenases and related proteins; E=3e-24 PFAM: PF02871; NAD/NADP octopine/nopaline deh; E=0.21 PF01113; Dihydrodipicolinate reductase; E=0.045 PF00547; Urease, gamma subunit; E=0.84 NP_866412.1 PMID: 9244286 best DB hits: BLAST: pir:F75415; phosphoenolpyruvate carboxylase - Deinococcus; E=2e-92 swissprot:O32483; CAPP_RHOPA PHOSPHOENOLPYRUVATE CARBOXYLASE; E=3e-92 swissprot:P28594; CAPP_ANASP PHOSPHOENOLPYRUVATE CARBOXYLASE; E=4e-89 COG: DR1283; COG2352 Phosphoenolpyruvate carboxylase; E=2e-93 PFAM: PF00311; Phosphoenolpyruvate carboxylase; E=1.2e-15 NP_866416.1 PMID: 9359865 PMID: 10632710 PMID: 9389475 best DB hits: BLAST: gb:AAB89512.1; (AE000983) conserved hypothetical protein; E=0.006 gb:AAC26855.1; (AF069951) 5'-adenylylsulfate reductase; E=0.069 swissprot:P80579; THIO_ALIAC THIOREDOXIN (TRX) ----- pdb: 1QUW; E=0.32 COG: AF1737; COG1331 Highly conserved protein containing a thioredoxin; E=6e-04 NP_866418.1 PMID: 9171404 best DB hits: BLAST: ddbj:BAA14001.1; (D89626) adenylate cyclase [Anabaena sp.]; E=0.018 pir:S75331; penicillin-binding protein 1B mrcB - Synechocystis sp.; E=0.10 ddbj:BAB11326.1; (AB016886) gene_id:MCA23.11~unknown protein; E=0.14 COG: slr1710; COG0744 Membrane carboxypeptidase (penicillin-binding; E=0.010 PFAM: PF02590; Uncharacterized ACR, COG1576; E=0.23 PF00498; FHA domain; E=1.6e-09 NP_866419.1 best DB hits: BLAST: ddbj:BAB07003.1; (AP001518) BH3284~unknown conserved protein; E=2e-51 pir:D69999; conserved hypothetical protein ytqA - Bacillus subtilis; E=3e-48 gb:AAK06364.1; AE006455_10 (AE006455) HYPOTHETICAL PROTEIN; E=1e-46 COG: BH3284; COG1242 Uncharacterized FeS oxidoreductases; E=2e-52 MJ1136; COG1243 ELP3 component of the RNA polymerase II complex,; E=2e-07 BS_hemN; COG0635 Coproporphyrinogen III oxidase and related FeS; E=2e-05 NP_866424.1 PMID: 97000351 best DB hits: BLAST: embl:CAB90984.1; (AL355832) deoR-family transcriptional; E=3e-15 gb:AAD15248.1; (L37338) repressor [Streptomyces; E=3e-14 ddbj:BAB05608.1; (AP001513) BH1889~unknown conserved protein; E=3e-10 COG: BH1889; COG2378 Predicted transcriptional regulator; E=3e-11 PFAM: PF00455; Bacterial regulatory proteins, deoR; E=0.0029 PF01022; Bacterial regulatory protein, arsR f; E=0.12 NP_866425.1 PMID: 20435850 best DB hits: BLAST: pir:B70957; probable ephA protein - Mycobacterium tuberculosis; E=1e-57 gb:AAG14967.1; AF233335_1 (AF233335) soluble epoxide hydrolase; E=7e-44 gb:AAG23251.1; AF311103_2 (AF311103) cytosolic epoxide hydrolase; E=8e-44 COG: Rv3617; COG0596 Predicted hydrolases or acyltransferases (alpha/beta; E=1e-58 BS_yfhM; COG0596 Predicted hydrolases or acyltransferases; E=8e-27 DR2549; COG0596 Predicted hydrolases or acyltransferases (alpha/beta; E=2e-23 PFAM: PF00561; alpha/beta hydrolase fold; E=2.5e-23 NP_866426.1 best DB hits: PFAM: PF00189; Ribosomal protein S3, C-termin; E=0.66 NP_866427.1 PMID: 97000351 best DB hits: BLAST: embl:CAB71254.1; (AL138598) hypothetical protein SC1A2.16c.; E=3e-16 embl:CAB95448.1; (AL359782) hypothetical protein, CHR1.152; E=9e-08 NP_866434.1 PMID: 8759840 best DB hits: BLAST: pir:E70027; probable 3-oxoacyl-[acyl-carrier-protein] reductase (EC; E=3e-75 pir:H83476; probable short-chain dehydrogenase PA1344 [imported] -; E=2e-60 pir:H70046; probable 3-oxoacyl-[acyl-carrier-protein] reductase (EC; E=1e-53 COG: BS_yvaG; COG1028 Dehydrogenases with different specificities; E=3e-76 PA1344; COG1028 Dehydrogenases with different specificities (related; E=2e-61 BS_yvrD; COG1028 Dehydrogenases with different specificities; E=1e-54 PFAM: PF00106; short chain dehydrogenase; E=5.1e-48 PF00678; Short chain dehydrogenase/reduct; E=3.4e-06 NP_866435.1 best DB hits: BLAST: ddbj:BAB04024.1; (AP001508) BH0305~unknown conserved protein in; E=1e-29 gb:AAG59409.1; AE005653_10 (AE005653) oxidoreductase; E=1e-26 swissprot:P39315; YTFG_ECOLI HYPOTHETICAL 29.7 KD PROTEIN IN; E=3e-26 COG: BH0305; COG0702 Predicted nucleoside-diphosphate-sugar epimerases; E=1e-30 PFAM: PF01073; 3-beta hydroxysteroid dehydrogenase; E=0.1 NP_866437.1 PMID: 11016950 best DB hits: BLAST: pir:F82096; conserved hypothetical protein VC2282 [imported] -; E=7e-56 pir:T44958; hypothetical protein [imported] - Natronomonas pharaonis; E=6e-55 gb:AAG20249.1; (AE005100) succinate dehydrogenase subunit; Sdh; E=3e-21 COG: VC2282; COG2988 Succinylglutamate desuccinylase; E=7e-57 NP_866441.1 PMID: 9872454 best DB hits: BLAST: ddbj:BAB08360.1; (AB015475) Ta11-like non-LTR retroelement; E=0.40 PFAM: PF00114; Pilin (bacterial filament); E=0.014 NP_866442.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.014 NP_866445.1 PMID: 11679669 NP_866446.1 PMID: 8063417 best DB hits: BLAST: pir:C83500; probable two-component sensor PA1158 [imported] -; E=6e-33 gb:AAG56596.1; AE005384_6 (AE005384) sensor histidine protein; E=2e-27 swissprot:P18392; RSTB_ECOLI SENSOR PROTEIN RSTB ----- pir:; E=2e-27 COG: PA1158; COG0642 Sensory transduction histidine kinases; E=6e-34 PFAM: PF00672; HAMP domain; E=8.4e-08 PF00512; His Kinase A (phosphoacceptor) doma; E=1.1e-15 PF02518; Histidine kinase-, DNA gyrase B-, p; E=1.2e-31 NP_866447.1 PMID: 8969176 PMID: 11237620 best DB hits: BLAST: pir:H83140; 6,7-dimethyl-8-ribityllumazine synthase PA4053; E=8e-21 pir:C82741; 6,7-dimethyl-8-ribityllumazine synthase XF0954; E=2e-20 gb:AAK02815.1; (AE006110) RibH [Pasteurella multocida]; E=4e-19 COG: PA4053; COG0054 Riboflavin synthase beta-chain; E=7e-22 PFAM: PF00885; 6,7-dimethyl-8-ribityllumazine; E=1.3e-34 NP_866448.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes NP_866449.1 PMID: 8921872 PMID: 91092284 PMID: 89024568 best DB hits: BLAST: pir:T08409; DNA-3-methyladenine glycosidase I homolog F18B3.160 -; E=9e-20 gb:AAD39589.1; AC007858_3 (AC007858) This gene is a member of PF; E=2e-19 ddbj:BAB05468.1; (AP001513) DNA-3-methyladenine glycosidase; E=4e-19 COG: BH1749; COG0122 3-Methyladenine DNA glycosylase; E=4e-20 NP_866451.1 PMID: 8062823 PMID: 96214991 PMID: 8062822 best DB hits: BLAST: swissprot:P72935; YA17_SYNY3 AMMONIUM TRANSPORTER SLL1017; E=1e-70 gb:AAF15904.1; AF208160_1 (AF208160) high affinity ammonium; E=1e-56 swissprot:P54147; Y108_SYNY3 AMMONIUM TRANSPORTER SLL0108; E=1e-55 COG: sll1017; COG0004 Ammonia permeases; E=1e-71 PFAM: PF00909; Ammonium Transporter Family; E=7.6e-157 NP_866452.1 PMID: 1702507 best DB hits: BLAST: pir:A72380; nitrogen regulatory protein P-II - Thermotoga maritima; E=4e-21 swissprot:P21193; GLNB_AZOBR NITROGEN REGULATORY PROTEIN P-II; E=8e-17 embl:CAA63238.1; (X92496) PII-like protein Pz [Azospirillum; E=1e-16 COG: TM0403; COG0347 Nitrogen regulatory protein PII; E=4e-22 PFAM: PF00543; Nitrogen regulatory protein P-II; E=2.7e-27 NP_866453.1 PMID: 10473406 PMID: 9274014 best DB hits: BLAST: pir:T05414; protein kinase homolog F28A23.20 - Arabidopsis thaliana; E=9e-17 gb:AAG36766.1; AF180369_1 (AF180369) acetyl xylan esterase AxeA; E=3e-14 pir:T47558; hypothetical protein F8J2.180 - Arabidopsis thaliana; E=5e-13 NP_866454.1 best DB hits: PFAM: PF00150; Cellulase (glycosyl hydrolase famil; E=0.26 NP_866456.1 PMID: 9324248 best DB hits: BLAST: gb:AAD04192.1; (U63813) lichenase [Orpinomyces sp. PC-2]; E=0.16 pir:A36910; xylanase, beta(1,3-1,4)-glucanase - Ruminococcus; E=0.25 swissprot:Q53317; XYND_RUMFL XYLANASEBETA-GLUCANASE PRECURSOR; E=0.25 NP_866458.1 PMID: 2828880 best DB hits: BLAST: pir:B70351; ribosomal-protein-alanine acetyltransferase - Aquifex; E=1e-11 pir:G69233; N-terminal acetyltransferase complex, subunit ARD1 -; E=3e-10 pir:S56597; peptide N-acetyltransferase (EC 2.3.1.-) rimI -; E=2e-09 COG: aq_567; COG0456 Acetyltransferases; E=1e-12 Ta0455; COG0454 Histone acetyltransferase HPA2 and related; E=2e-05 VC0657; COG0456 Acetyltransferases; E=2e-05 PFAM: PF00583; Acetyltransferase (GNAT) family; E=6e-23 NP_866459.1 PMID: 9792656 PMID: 9791168 best DB hits: BLAST: gb:AAC69683.1; (AF019747) beta1,4-galactosyltransferase; E=0.76 NP_866460.1 best DB hits: PFAM: PF00535; Glycosyl transferase; E=0.00033 NP_866462.1 PMID: 11466286 best DB hits: BLAST: pir:T08153; cysteine proteinase (EC 3.4.22.-) - Volvox carteri f.; E=0.003 pir:H71456; probable pyrolysin (EC 3.4.-.-) homolog PH0310; E=0.021 pir:C75015; probable pyrolysin (EC 3.4.-.-) homolog PAB1252; E=0.024 PFAM: PF00112; Papain family cysteine protease; E=0.071 NP_866463.1 PMID: 8969512 best DB hits: BLAST: pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=6e-44 swissprot:P54744; PKNB_MYCLE SERINETHREONINE-PROTEIN; E=1e-37 swissprot:P71584; PKNB_MYCTU SERINETHREONINE-PROTEIN; E=3e-37 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=6e-45 PFAM: PF00069; Protein kinase domain; E=1.5e-45 PF00004; ATPase associated with vari; E=0.14 PF00005; ABC transporter; E=0.082 NP_866464.1 best DB hits: BLAST: embl:CAC11769.1; (AL445064) conserved hypothetical protein; E=9e-08 pir:F70426; conserved hypothetical protein aq_1457 - Aquifex; E=4e-07 embl:CAB88946.1; (AL353863) methyltransferase; E=7e-07 COG: Ta0630; COG0500 SAM-dependent methyltransferases; E=9e-09 VC0083; COG2226 Methylase involved in ubiquinone/menaquinone; E=2e-05 aq_262; COG0500 SAM-dependent methyltransferases; E=1e-04 NP_866465.1 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=0.005 NP_866469.1 PMID: 9389475 best DB hits: BLAST: gb:AAB91035.1; (AE001092) monoamine oxidase regulatory protein,; E=0.026 embl:CAC23410.1; (AL512967) hypothetical monoamine oxidase; E=0.056 gb:AAB88943.1; (AE000944) maoC protein (maoC) [Archaeoglobus; E=0.095 COG: AF0198; COG2030 Monoamine oxidase; E=0.002 PFAM: PF01575; MaoC like domain; E=5.8e-07 NP_866470.1 PMID: 92177421 best DB hits: BLAST: pir:C75453; GMC oxidoreductase - Deinococcus radiodurans (strain R1); E=9e-35 swissprot:Q00593; ALKJ_PSEOL ALCOHOL DEHYDROGENASE [ACCEPTOR]; E=3e-28 embl:CAB51051.1; (AJ233397) alcohol dehydrogenase [Pseudomonas; E=3e-25 COG: DR0965; COG2303 Choline dehydrogenase and related flavoproteins; E=9e-36 PFAM: PF01494; FAD binding domain; E=0.085 PF00732; GMC oxidoreductases; E=2.3e-09 PF01583; Adenylylsulfate kinase; E=0.85 NP_866471.1 PMID: 9371463 best DB hits: BLAST: pir:D69036; conserved hypothetical protein MTH1267 -; E=2e-14 pir:B75083; probable hydroxyacylglutathione hydrolase (EC 3.1.2.6); E=5e-10 pir:F71229; hypothetical protein PH0096 - Pyrococcus horikoshii; E=6e-07 COG: MTH1267; COG0491 Zn-dependent hydrolases, including glyoxylases; E=1e-15 PFAM: PF00753; Metallo-beta-lactamase superfamil; E=1.5e-30 NP_866472.1 PMID: 8905231 best DB hits: BLAST: pir:S76683; hypothetical protein - Synechocystis sp. (strain PCC; E=7e-25 COG: slr0625; COG0786 Na+/glutamate symporter; E=7e-26 NP_866473.1 PMID: 9371463 best DB hits: BLAST: swissprot:O26742; PUR1_METTH AMIDOPHOSPHORIBOSYLTRANSFERASE; E=6e-54 gb:AAG19793.1; (AE005064) amidophosphoribosyl-pyrophosphate; E=2e-53 gb:AAB90366.1; (AE001044) amidophosphoribosyltransferase (purF); E=2e-52 COG: MTH646; COG0034 Glutamine phosphoribosylpyrophosphate; E=5e-55 purF; COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; E=5e-37 TM1247; COG0034 Glutamine phosphoribosylpyrophosphate; E=2e-36 PFAM: PF00310; Glutamine amidotransferases c; E=1.8e-22 PF00156; Phosphoribosyl transferase do; E=3.2e-08 NP_866474.1 PMID: 10086841 best DB hits: BLAST: ddbj:BAB05342.1; (AP001512) BH1623~unknown conserved protein; E=9e-40 swissprot:P50736; YPDA_BACSU HYPOTHETICAL 36.3 KD PROTEIN IN; E=1e-38 pir:B75252; conserved hypothetical protein - Deinococcus radiodurans; E=5e-25 COG: BH1623; COG0492 Thioredoxin reductase/alkyl hydroperoxide reductase; E=9e-41 BH3677; COG2072 Predicted flavoprotein involved in K+ transport; E=2e-06 BS_yumC; COG0492 Thioredoxin reductase/alkyl hydroperoxide reductase; E=4e-05 PFAM: PF01494; FAD binding domain; E=0.0024 PF01266; D-amino acid oxidase; E=0.43 PF00070; Pyridine nucleotide-disulphide; E=3.5e-15 NP_866476.1 PMID: 8973323 best DB hits: BLAST: swissprot:P54724; YFIH_BACSU HYPOTHETICAL 34.8 KD PROTEIN IN GLVBC; E=2e-09 pir:T34928; hypothetical protein SC3F9.06 SC3F9.06 - Streptomyces; E=2e-09 ddbj:BAB04968.1; (AP001511) BH1249~unknown conserved protein; E=0.001 COG: BH2317; COG1082 Predicted endonucleases; E=0.006 NP_866478.1 PMID: 91035372 PMID: 88240299 best DB hits: BLAST: pir:B82536; ABC transporter ATP-binding protein XF2617 [imported] -; E=1e-130 swissprot:Q57242; UUP1_HAEIN ABC TRANSPORTER ATP-BINDING PROTEIN; E=1e-130 gb:AAK02961.1; (AE006126) Uup1 [Pasteurella multocida]; E=1e-129 COG: XF2617; COG0488 ATPase components of ABC transporters with; E=1e-131 uup; COG0488 ATPase components of ABC transporters with duplicated; E=1e-127 VC1486; COG0488 ATPase components of ABC transporters with; E=1e-126 PFAM: PF00006; ATP synthase alpha/beta famil; E=0.076 PF00005; ABC transporter; E=1.9e-51 PF01202; Shikimate kinase; E=0.76 NP_866479.1 PMID: 10567266 best DB hits: BLAST: pir:S77512; ABC-type transport protein slr1901 - Synechocystis sp.; E=3e-67 pir:F75377; ABC transporter ATP-binding protein - Deinococcus; E=6e-67 pir:G75548; ABC transporter ATP-binding protein - Deinococcus; E=1e-50 COG: slr1901; COG1131 ABC-type multidrug transport system, ATPase; E=3e-68 BH1054_2; COG0842 Permease component of an ABC-transporter; E=8e-31 PH0820; COG1131 ABC-type multidrug transport system, ATPase; E=1e-30 PFAM: PF00448; SRP54-type protein, GTPase do; E=0.012 PF02223; Thymidylate kinase; E=0.13 PF00005; ABC transporter; E=1.3e-44 NP_866480.1 PMID: 9384377 best DB hits: BLAST: pir:F69772; hypothetical protein ydbT - Bacillus subtilis -----; E=6e-14 ddbj:BAB05440.1; (AP001512) BH1721~unknown conserved protein; E=7e-13 embl:CAA76218.1; (Y16431) hypothetical protein [Staphylococcus; E=9e-09 COG: BS_ydbS; COG3402 Uncharacterized protein; E=4e-07 NP_866481.1 PMID: 9384377 best DB hits: BLAST: pir:E69772; hypothetical protein ydbS - Bacillus subtilis -----; E=7e-11 ddbj:BAB05439.1; (AP001512) BH1720~unknown conserved protein; E=6e-07 pir:T36081; probable integral membrane protein - Streptomyces; E=6e-06 COG: BS_ydbS; COG3402 Uncharacterized protein; E=7e-12 NP_866485.1 best DB hits: BLAST: gb:AAF53435.1; (AE003646) ck gene product [Drosophila melanogaster]; E=0.86 NP_866489.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.0048 NP_866494.1 PMID: 89024591 PMID: 94329558 best DB hits: BLAST: gb:AAD31513.1; AF143504_1 (AF143504) ECF-like sigma factor SigE; E=5e-07 gb:AAG01453.1; AF282857_1 (AF282857) HrpL [Pantoea stewartii; E=3e-06 gb:AAF76211.1; AF272053_1 (AF272053) HrpL [Erwinia herbicola pv.; E=5e-06 COG: Rv3223c; COG1595 DNA-directed RNA polymerase specialized sigma; E=6e-06 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=3.5e-05 NP_866496.1 PMID: 11997336 best DB hits: BLAST: gb:AAA65701.1; (U12424) mitochondrial glycerol-3-phosphate; E=0.004 pir:G02093; glycerol-3-phosphate dehydrogenase - human ----- gb:; E=0.004 gb:AAB50200.1; (U79250) glycerol-3-phosphate dehydrogenase [Homo; E=0.004 COG: AF0273; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; E=0.001 PFAM: PF01224; FAD-dependent glycerol-3-phospha; E=3e-05 PF01134; Glucose inhibited division prote; E=0.029 PF00070; Pyridine nucleotide-disulphide o; E=0.00038 NP_866499.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_866504.1 PMID: 7559510 best DB hits: BLAST: ddbj:BAA90651.1; (AB003153) End3 [Paenibacillus polymyxa]; E=3e-28 pir:C71482; probable endonuclease III - Chlamydia trachomatis; E=3e-28 pir:B75537; endonuclease III - Deinococcus radiodurans (strain R1); E=7e-28 COG: CT697; COG0177 Predicted EndoIII-related endonuclease; E=3e-29 PFAM: PF00730; HhH-GPD superfamily base excision DN; E=1.6e-61 NP_866505.1 PMID: 7603442 best DB hits: BLAST: swissprot:Q59967; SRPH_SYNP7 SERINE ACETYLTRANSFERASE, PLASMID; E=7e-55 ddbj:BAA82868.1; (AB023954) serine acetyltransferase [Entamoeba; E=3e-35 ddbj:BAA82870.1; (AB023956) serine acetyltransferase 2 [Entamoeba; E=8e-34 COG: BH0110; COG1045 Serine acetyltransferase; E=3e-30 BS_ykuQ; COG2171 Tetrahydrodipicolinate N-succinyltransferase; E=2e-04 wcaB; COG1045 Serine acetyltransferase; E=0.002 PFAM: PF00132; Bacterial transferase hexapeptide (f; E=0.078 NP_866514.1 best DB hits: BLAST: pir:E82203; transcriptional regulator TetR family VC1408 [imported] -; E=1e-10 pir:F82161; transcriptional regulator TetR family VC1746 [imported] -; E=4e-10 pir:C83186; probable transcriptional regulator PA3678 [imported] -; E=9e-08 COG: VC1408; COG1309 Transcriptional regulator; E=1e-11 PFAM: PF00440; Bacterial regulatory proteins, tetR; E=2.4e-17 NP_866516.1 PMID: 8407802 best DB hits: BLAST: pir:F64826; probable membrane protein b0878 - Escherichia coli; E=4e-05 swissprot:P75830; YBJY_ECOLI HYPOTHETICAL 41.7 KDA PROTEIN IN; E=4e-05 gb:AAG55260.1; AE005269_4 (AE005269) membrane protein; E=7e-05 COG: ybjY; COG0845 Membrane-fusion protein; E=4e-06 VC1410; COG1566 Multidrug resistance efflux pump; E=0.008 PFAM: PF00364; Biotin-requiring enzyme; E=0.39 NP_866517.1 PMID: 8407802 best DB hits: BLAST: pir:F82829; acriflavin resistance protein XF0243 [imported] - Xylella; E=2e-88 pir:F82159; transporter, AcrBD/F family VC1757 [imported] - Vibrio; E=3e-86 pir:B83627; probable RND efflux transporter PA0158 [imported] -; E=6e-79 COG: XF0243; COG0841 Cation/multidrug efflux pump; E=2e-89 PFAM: PF00873; AcrB/AcrD/AcrF family; E=3e-15 NP_866522.1 best DB hits: BLAST: pir:G72242; flagellar P-ring protein - Thermotoga maritima (strain; E=9e-07 gb:AAG09321.1; (AF178757) CpcF [Nostoc sp. PCC 7120]; E=0.10 pir:T44927; hypothetical protein orf398 [imported] - Anabaena sp.; E=0.47 COG: TM1539; COG1706 Flagellar basal-body P-ring protein; E=9e-08 NP_866523.1 PMID: 10984043 best DB hits: BLAST: pir:B83386; hypothetical protein PA2078 [imported] - Pseudomonas; E=7e-14 swissprot:P55493; Y4IJ_RHISN HYPOTHETICAL 65.5 KD PROTEIN Y4IJ; E=2e-13 swissprot:P55496; Y4IM_RHISN HYPOTHETICAL 47.1 KD PROTEIN Y4IM; E=1e-11 PFAM: PF00034; Cytochrome c; E=0.064 NP_866525.1 PMID: 8789257 best DB hits: BLAST: ddbj:BAB06786.1; (AP001517) BH3067~unknown conserved protein; E=4e-31 pir:S76403; hypothetical protein - Synechocystis sp. (strain PCC; E=7e-29 pir:C69986; conserved hypothetical protein ysnA - Bacillus subtilis; E=1e-27 COG: BH3067; COG0127 Xanthosine triphosphate pyrophosphatase; E=3e-32 PFAM: PF01725; Ham1 family; E=1.2e-72 NP_866526.1 best DB hits: BLAST: swissprot:Q9ZDY5; Y178_RICPR HYPOTHETICAL PROTEIN RP178 -----; E=2e-23 pir:E81913; hypothetical protein NMA0704 [imported] - Neisseria; E=3e-12 pir:G81189; 6-pyruvoyl tetrahydrobiopterin synthase, probable; E=7e-12 COG: RP178; COG0720 6-pyruvoyl-tetrahydropterin synthase; E=2e-24 PFAM: PF01242; 6-pyruvoyl tetrahydropterin synthase; E=1.2e-09 NP_866530.1 PMID: 8472911 best DB hits: BLAST: embl:CAB02496.1; (Z80356) glucose-fructose oxidoreductase; E=2e-07 pdb:1OFG; A Chain A, Glucose-Fructose Oxidoreductase -----; E=2e-07 pdb:1EVJ; A Chain A, Crystal Structure Of Glucose-Fructose; E=2e-07 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=1e-05 PFAM: PF01408; Oxidoreductase, NAD-bindi; E=3.2e-09 NP_866531.1 PMID: 10470850 best DB hits: BLAST: ddbj:BAB09588.1; (AB018118) gene_id:MRI1.6~pir D64592~similar to; E=8e-10 pir:S77300; hypothetical protein slr1403 - Synechocystis sp. (strain; E=0.018 PFAM: PF02012; BNR repeat; E=0.076 NP_866533.1 PMID: 7910580 best DB hits: BLAST: embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=6e-46 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=6e-46 swissprot:P50428; ARSA_MOUSE ARYLSULFATASE A PRECURSOR (ASA); E=2e-45 COG: aslA; COG3119 Arylsulfatase A and related enzymes; E=4e-22 PFAM: PF01069; Fatty acid desaturase; E=0.82 PF00884; Sulfatase; E=1.4e-38 NP_866537.1 catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic NP_866538.1 PMID: 2229036 best DB hits: BLAST: swissprot:P33982; YHBG_AZOCA PROBABLE ABC TRANSPORTER ATP-BINDING; E=2e-66 gb:AAA80299.1; (U23471) ABC-type permease homolog [Rhizobium; E=1e-64 swissprot:P25885; YHBG_RHIME PROBABLE ABC TRANSPORTER ATP-BINDING; E=7e-63 COG: DR2134; COG1137 ABC-type (unclassified) transport system, ATPase; E=2e-61 PA1071; COG0411 High-affinity branched-chain amino acid transport; E=1e-37 MTH1370; COG1131 ABC-type multidrug transport system, ATPase; E=3e-35 PFAM: PF00005; ABC transporter; E=3.8e-59 NP_866539.1 PMID: 2202591 best DB hits: BLAST: pir:C82073; signal peptidase I VC2462 [imported] - Vibrio cholerae; E=3e-07 pir:H83550; signal peptidase I PA0768 [imported] - Pseudomonas; E=3e-06 swissprot:P23697; LEP_SALTY SIGNAL PEPTIDASE I (SPASE I) (LEADER; E=3e-06 COG: VC2462; COG0681 Signal peptidase I; E=3e-08 PFAM: PF00461; Signal peptidase I; E=0.00013 NP_866544.1 PMID: 10880436 NP_866545.1 PMID: 11823852 best DB hits: BLAST: swissprot:Q56740; LEP4_VIBVU TYPE 4 PREPILIN-LIKE PROTEINS LEADER; E=0.020 pir:S32915; type IV prepilin peptidase (EC 3.4.99.-) pilD -; E=0.059 pir:B82078; leader peptidase PilD VC2426 [imported] - Vibrio; E=0.065 COG: VC2426; COG1989 Signal peptidase, cleaves prepilin-like proteins; E=0.006 PFAM: PF01478; Type III leader peptidase famil; E=0.028 NP_866546.1 PMID: 10880436 best DB hits: BLAST: gb:AAF40191.1; AF229646_3 (AF229646) CpaB [Caulobacter crescentus]; E=0.003 pir:A70601; hypothetical protein Rv0990c - Mycobacterium; E=0.18 NP_866548.1 PMID: 10880436 best DB hits: BLAST: swissprot:P55702; Y4XJ_RHISN HYPOTHETICAL 44.3 KD PROTEIN Y4XJ; E=1e-40 gb:AAG60826.1; AF322012_131 (AF322013) RhcC2 [Bradyrhizobium; E=4e-36 gb:AAF40192.1; AF229646_4 (AF229646) CpaC [Caulobacter crescentus]; E=5e-32 COG: PA4304; COG1450 General secretory pathway protein D; E=1e-24 PFAM: PF00263; Bacterial type II and III secreti; E=3e-26 NP_866549.1 PMID: 10880436 best DB hits: BLAST: pir:F83108; hypothetical protein PA4303 [imported] - Pseudomonas; E=3e-11 gb:AAF40194.1; AF229646_6 (AF229646) CpaE [Caulobacter crescentus]; E=3e-06 swissprot:Q55900; MIND_SYNY3 SEPTUM SITE-DETERMINING PROTEIN MIND; E=3e-05 COG: sll0289; COG2894 Septum formation inhibitor-activating ATPase; E=2e-06 PH0612; COG0455 ATPases involved in chromosome partitioning; E=4e-05 BH3842_1; COG0784 CheY-like receiver domains; E=0.001 PFAM: PF00072; Response regulator receiver doma; E=0.0058 NP_866550.1 PMID: 8344936 best DB hits: BLAST: swissprot:Q9ZDG3; LNT_RICPR APOLIPOPROTEIN N-ACYLTRANSFERASE (ALP; E=7e-14 pir:A82261; apolipoprotein N-acyltransferase VC0958 [imported] -; E=2e-12 swissprot:P44626; LNT_HAEIN APOLIPOPROTEIN N-ACYLTRANSFERASE (ALP; E=1e-10 COG: RP366; COG0815 Apolipoprotein N-acyltransferase; E=6e-15 NP_866551.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) NP_866552.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers NP_866557.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 NP_866559.1 PMID: 8347586 best DB hits: BLAST: swissprot:Q9WZ44; QUEA_THEMA S-ADENOSYLMETHIONINE:TRNA; E=2e-68 gb:AAK05673.1; AE006388_4 (AE006388) S-adenosylmethionine tRNA; E=3e-68 swissprot:O32054; QUEA_BACSU S-ADENOSYLMETHIONINE:TRNA; E=2e-64 COG: TM0574; COG0809; E=2e-69 queA; COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase; E=7e-57 HI0245; COG0809; E=1e-54 PFAM: PF02547; Queuosine biosynthesis protei; E=5.5e-57 NP_866560.1 PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=5e-32 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=2e-29 embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=1e-28 COG: yidJ; COG3119 Arylsulfatase A and related enzymes; E=2e-24 PFAM: PF00884; Sulfatase; E=7.6e-66 NP_866561.1 PMID: 9882648 PMID: 10411273 best DB hits: BLAST: embl:CAA09772.1; (AJ011781) amylosucrase [Neisseria; E=1e-165 pir:C75457; alpha-amlyase - Deinococcus radiodurans (strain R1); E=1e-123 pir:E75322; probable trehalose synthase - Deinococcus radiodurans; E=4e-41 COG: DR0933; COG0366 Glycosidases; E=1e-124 PFAM: PF00128; Alpha amylase, catalytic domain; E=1.5e-26 NP_866562.1 PMID: 1840396 PMID: 10411273 best DB hits: BLAST: pir:S75935; hypothetical protein - Synechocystis sp. (strain PCC; E=1e-155 pir:T04062; sucrose-phosphate synthase homolog F28M11.40 - Arabidopsis; E=6e-91 pir:T04103; sucrose-phosphate synthase (EC 2.4.1.14) 1 - rice; E=1e-87 COG: sll0045_1; COG0438 Predicted glycosyltransferases; E=1e-111 sll0045_2; COG0561 Predicted hydrolases of the HAD superfamily; E=8e-40 PH1844; COG0438 Predicted glycosyltransferases; E=2e-11 PFAM: PF00534; Glycosyl transferases group 1; E=2.6e-18 PF00702; haloacid dehalogenase-like hy; E=0.67 NP_866563.1 PMID: 1809835 PMID: 10411273 best DB hits: BLAST: gb:AAG60871.1; AF322012_176 (AF322013) ID402 [Bradyrhizobium; E=5e-08 gb:AAK03933.1; (AE006222) unknown [Pasteurella multocida]; E=2e-06 pir:G75112; fructokinase (EC 2.7.1.4) PAB0482 - Pyrococcus abyssi; E=2e-05 COG: PAB0482; COG0524 Sugar kinases, ribokinase; E=2e-06 PFAM: PF00294; pfkB family carbohydrate kinase; E=2.5e-12 NP_866564.1 PMID: 1747104 best DB hits: BLAST: ddbj:BAA11010.1; (D64130) alpha-amylase [Sulfolobus solfataricus]; E=4e-93 pir:JC5135; alpha-amylase (EC 3.2.1.1) - Sulfolobus solfataricus; E=4e-93 pir:S73087; alpha-amylase (EC 3.2.1.1) precursor - Sulfolobus; E=1e-89 COG: Rv1562c; COG0296 1,4-alpha-glucan branching enzyme; E=6e-72 BS_amyX; COG1523 Pullulanase and related glycosidases; E=1e-14 YEL011w; COG0296 1,4-alpha-glucan branching enzyme; E=1e-12 PFAM: PF00128; Alpha amylase, catalytic domain; E=2.4e-17 NP_866565.1 PMID: 2186809 best DB hits: BLAST: ddbj:BAB04896.1; (AP001511) protein secretion (post-translocation; E=2e-08 pir:E71662; protein export protein prsa precursor (prsA) RP576 -; E=3e-05 pir:A83421; peptidyl-prolyl cis-trans isomerase D PA1805 [imported]; E=4e-05 COG: BH1177; COG0760 Parvulin-like peptidyl-prolyl isomerase; E=2e-09 PFAM: PF00639; PPIC-type PPIASE domain.; E=2.4e-08 NP_866567.1 PMID: 11030655 best DB hits: BLAST: embl:CAA98714.1; (Z74189) ORF YDL141w [Saccharomyces cerevisiae]; E=0.018 pir:H81716; biotin apo-protein ligase-related protein TC0305; E=0.020 pir:A72116; biotin apo-protein ligase-related protein CP0643; E=0.089 NP_866572.1 PMID: 11016950 best DB hits: BLAST: gb:AAG19976.1; (AE005079) Vng1746c [Halobacterium sp. NRC-1]; E=7e-08 embl:CAB61591.1; (AL133210) hypothetical protein SCG11A.10c; E=1e-04 swissprot:P54543; YQJF_BACSU HYPOTHETICAL 23.9 KD PROTEIN IN; E=0.002 COG: VNG1746C; COG3361 Uncharacterized ACR; E=7e-09 NP_866577.1 best DB hits: BLAST: pir:MMFFB2; laminin gamma-1 chain precursor - fruit fly (Drosophila; E=0.34 swissprot:P15215; LMG1_DROME LAMININ GAMMA-1 CHAIN PRECURSOR; E=0.34 prf:1410326A; laminin B2 [Drosophila sp.]; E=0.34 NP_866579.1 PMID: 3536912 best DB hits: BLAST: embl:CAC01344.1; (AL390975) DNA-3-methyladenine glycosylase I; E=1e-44 gb:AAG58698.1; AE005582_1 (AE005582) 3-methyladenine DNA; E=1e-42 swissprot:P05100; 3MG1_ECOLI DNA-3-METHYLADENINE GLYCOSYLASE I; E=2e-42 COG: tag; COG2818 3-Methyladenine DNA glycosylase; E=2e-43 NP_866583.1 best DB hits: BLAST: pir:JN0454; hypothetical 10.5K protein (URA1 5' region) - gill; E=2e-14 pir:D70531; hypothetical protein Rv2705c - Mycobacterium; E=2e-05 pir:A75544; conserved hypothetical protein - Deinococcus radiodurans; E=4e-05 NP_866586.1 best DB hits: PFAM: PF01617; Surface antigen; E=0.0013 NP_866587.1 best DB hits: PFAM: PF01434; Peptidase M41; E=0.034 NP_866588.1 PMID: 1909424 best DB hits: BLAST: swissprot:P26223; XYNB_BUTFI ENDO-1,4-BETA-XYLANASE B (XYLANASE B); E=1e-08 prf:1718306A; xylanase [Butyrivibrio fibrisolvens]; E=1e-08 gb:AAK04528.1; AE006280_4 (AE006280) sugar hydrolase [Lactococcus; E=4e-06 NP_866589.1 PMID: 7495855 best DB hits: BLAST: ddbj:BAB06584.1; (AP001516) hemolysin III [Bacillus halodurans]; E=1e-17 swissprot:P54176; HLY3_BACCE HEMOLYSIN III (HLY-III) -----; E=2e-16 swissprot:Q46827; YQFA_ECOLI HYPOTHETICAL 23.8 KD PROTEIN IN; E=2e-16 COG: BH2865; COG1272 Predicted membrane proteins, hemolysin III homologs; E=1e-18 NP_866591.1 best DB hits: BLAST: swissprot:Q00808; HET1_PODAN VEGETATIBLE INCOMPATIBILITY PROTEIN; E=2e-25 swissprot:P49695; PKWA_THECU SERINETHREONINE-PROTEIN; E=1e-21 embl:CAB45034.1; (AL078635) WD-repeat containing protein; E=1e-21 COG: sll0163; COG2319 WD40 repeat protein; E=4e-18 PFAM: PF00400; WD domain, G-beta repeat; E=3e-05 NP_866592.1 PMID: 7522196 best DB hits: BLAST: swissprot:P35824; SLAP_BACCI S-LAYER RELATED PROTEIN PRECURSOR; E=0.18 PFAM: PF02369; Bacterial Ig-like domain (group 1); E=0.1 PF02368; Bacterial Ig-like domain (group 2); E=0.013 NP_866594.1 PMID: 1955860 best DB hits: BLAST: pir:B72216; endoglucanase - Thermotoga maritima (strain MSB8); E=7e-85 swissprot:P25472; GUND_CLOCE ENDOGLUCANASE D PRECURSOR; E=3e-52 swissprot:P16218; GUNH_CLOTM ENDOGLUCANASE H PRECURSOR (EGH); E=5e-49 COG: TM1751; COG2730 Endoglucanase; E=6e-86 PFAM: PF00150; Cellulase (glycosyl hydrolase famil; E=5.3e-47 NP_866596.1 best DB hits: BLAST: pir:D83545; probable helicase PA0799 [imported] - Pseudomonas; E=8e-44 pir:C72027; swisnf family helicase_2 - Chlamydophila pneumoniae; E=6e-42 ddbj:BAA99057.1; (AP002548) SWISNF family helicase_2; E=1e-41 COG: PA0799; COG0553 Superfamily II DNA/RNA helicases, SNF2 family; E=7e-45 PFAM: PF00176; SNF2 and others N-terminal domain; E=2.4e-43 PF00271; Helicase conserved C-terminal doma; E=1.4e-23 NP_866599.1 best DB hits: BLAST: ref:XP_010773.1; hypothetical protein FLJ11151 [Homo sapiens]; E=2e-53 ddbj:BAA92034.1; (AK002013) unnamed protein product [Homo; E=7e-53 ddbj:BAB14194.1; (AK022710) unnamed protein product [Homo; E=2e-52 NP_866605.1 PMID: 9389475 best DB hits: BLAST: gb:AAB89850.1; (AE001008) conserved hypothetical protein; E=0.006 gb:AAG09249.1; AF176640_2 (AF176640) alcohol dehydrogenase; E=0.20 gb:AAD56237.2; AF184915_1 (AF184915) methanol dehydrogenase large; E=0.22 COG: AF1399; COG1520 Uncharacterized proteins of WD40-like repeat family; E=5e-04 PFAM: PF01011; PQQ enzyme repeat; E=0.022 NP_866606.1 PMID: 8451183 best DB hits: BLAST: pir:C83489; probable transcriptional regulator PA1261 [imported] -; E=1e-39 gb:AAF43900.1; (U20115) adpA-like protein [Mycobacterium; E=2e-10 pir:T43707; hypothetical protein [imported] - Streptomyces; E=2e-09 COG: PA1261; COG2207 AraC-type DNA-binding domain-containing proteins; E=1e-40 PFAM: PF00165; Bacterial regulatory helix-turn-heli; E=2.7e-22 NP_866607.1 PMID: 1463470 best DB hits: BLAST: pir:D81141; dihydrodipicolinate synthase NMB0929 [imported] -; E=3e-09 pir:H81878; probable dihydrodipicolinate synthase (EC 4.2.1.52); E=4e-09 ddbj:BAB05461.1; (AP001513) dihydrodipicolinate synthase; E=1e-07 COG: NMB0929; COG0329 Dihydrodipicolinate synthetase/N-acetylneuraminate; E=3e-10 PFAM: PF01137; RNA 3'-terminal phosphate cyclase; E=0.88 PF00701; Dihydrodipicolinate synthetase famil; E=0.00018 NP_866608.1 PMID: 7906689 best DB hits: BLAST: pir:F82279; D-amino acid dehydrogenase, small chain VC0786; E=7e-43 pir:A81228; D-amino acid dehydrogenase, small chain NMB0176; E=1e-42 pir:C82001; D-amino-acid dehydrogenase (EC 1.4.99.1) small subunit; E=3e-40 COG: VC0786; COG0665 Glycine/D-amino acid oxidases (deaminating); E=6e-44 PFAM: PF01494; FAD binding domain; E=0.0014 PF02254; KTN NAD-binding domain; E=0.056 PF02032; Phytoene dehydrogenase related; E=0.013 NP_866610.1 PMID: 7778976 PMID: 8086457 PMID: 11722934 best DB hits: BLAST: pir:S47527; extracellular sucrase - Zymomonas mobilis ----- prf:; E=0.10 swissprot:Q60115; INVB_ZYMMO EXTRACELLULAR SUCRASE; E=0.24 gb:AAC36942.1; (L33403) extracellular sucrase [Zymomonas mobilis]; E=0.24 NP_866611.1 PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=6e-47 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=8e-46 pir:KJHUAB; N-acetylgalactosamine-4-sulfatase (EC 3.1.6.12); E=1e-44 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=1e-41 TM1703; COG1368 Phosphoglycerol transferase and related proteins,; E=7e-04 PAB0793; COG2194 Predicted membrane-associated, metal-dependent; E=0.003 PFAM: PF00884; Sulfatase; E=2.1e-109 NP_866612.1 PMID: 10809675 best DB hits: BLAST: gb:AAF72520.1; AF248951_1 (AF248951) mucin-desulfating sulfatase; E=2e-32 swissprot:P31447; YIDJ_ECOLI SULFATASE YIDJ -----; E=4e-27 gb:AAG58881.1; AE005599_13 (AE005599) sulfatase; E=8e-26 COG: yidJ; COG3119 Arylsulfatase A and related enzymes; E=3e-28 PAB0793; COG2194 Predicted membrane-associated, metal-dependent; E=0.005 PFAM: PF00884; Sulfatase; E=1.1e-26 NP_866614.1 PMID: 8981332 best DB hits: BLAST: gb:AAA67751.1; (U16789) collagen alpha-2 (XI) chain [Mus; E=0.024 gb:AAA67752.1; (U16790) collagen alpha-2 (XI) chain [Mus; E=0.024 pir:A55576; collagen alpha 2(XI) chain precursor, long form - mouse; E=0.024 NP_866616.1 best DB hits: BLAST: embl:CAB45032.1; (AL078635) large multi-functional; E=3e-22 embl:CAB58265.1; (AL121849) multi-domain protein; E=9e-19 pir:T36423; probable large, multifunctional secreted protein -; E=0.002 NP_866617.1 best DB hits: BLAST: pir:T34927; probable oxidoreductase - Streptomyces coelicolor; E=2e-07 gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=6e-07 pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=3e-05 COG: TM0585; COG0673 Predicted dehydrogenases and related proteins; E=3e-06 PFAM: PF01408; Oxidoreductase, NAD-bindi; E=3.2e-18 NP_866618.1 PMID: 9634230 best DB hits: BLAST: pir:F70837; probable sulfatase (EC 3.1.6.-) atsG - Mycobacterium; E=1e-37 prf:2204388A; sulphamidase [Homo sapiens]; E=4e-23 gb:AAG41945.1; AF304053_1 (AF304053) heparan N-sulfatase [Mus; E=8e-23 COG: Rv0296c; COG3119 Arylsulfatase A and related enzymes; E=1e-38 PFAM: PF00884; Sulfatase; E=1.5e-28 NP_866619.1 PMID: 96083602 best DB hits: BLAST: prf:2204388A; sulphamidase [Homo sapiens]; E=6e-47 gb:AAG17207.1; AF217204_1 (AF217204) heparan sulfate sulfamidase; E=6e-45 gb:AAF29467.1; (AF156255) N-sulfoglucosamine sulfohydrolase [Mus; E=4e-44 COG: Rv0296c; COG3119 Arylsulfatase A and related enzymes; E=6e-38 VC2600; COG3083 Predicted hydrolase of alkaline phosphatase; E=9e-05 VNG0061C; COG3119 Arylsulfatase A and related enzymes; E=0.006 PFAM: PF00884; Sulfatase; E=1.4e-43 NP_866622.1 PMID: 11823852 NP_866624.1 PMID: 10910347 best DB hits: BLAST: pir:C82791; conserved hypothetical protein XF0565 [imported] -; E=2e-39 pir:F72345; ray-related protein - Thermotoga maritima (strain MSB8); E=3e-20 ddbj:BAB15493.1; (AK026507) unnamed protein product [Homo; E=6e-19 COG: XF0565; COG2930 Uncharacterized ACR; E=2e-40 PFAM: PF02590; Uncharacterized ACR, COG1576; E=0.0018 NP_866625.1 PMID: 7910580 best DB hits: BLAST: embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=7e-32 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=7e-32 pdb:1E2S; P Chain P, Crystal Structure Of An Arylsulfatase A; E=1e-31 COG: aslA; COG3119 Arylsulfatase A and related enzymes; E=6e-28 BS_yqgS; COG1368 Phosphoglycerol transferase and related proteins,; E=0.001 VC2600; COG3083 Predicted hydrolase of alkaline phosphatase; E=0.006 PFAM: PF00884; Sulfatase; E=3.5e-33 NP_866626.1 PMID: 2830169 PMID: 1445207 best DB hits: BLAST: gb:AAC24510.1; (AF049243) regulatory protein [Mesorhizobium loti]; E=5e-37 swissprot:P10411; MELR_ECOLI MELIBIOSE OPERON REGULATORY PROTEIN; E=6e-28 ddbj:BAB20427.1; (AB053204) melibiose operon regulatory protein; E=9e-28 COG: melR; COG2207 AraC-type DNA-binding domain-containing proteins; E=6e-29 BS_adaA; COG2169 Adenosine deaminase; E=6e-10 VC1825; COG2207 AraC-type DNA-binding domain-containing proteins; E=2e-09 PFAM: PF00165; Bacterial regulatory helix-turn-heli; E=1.8e-24 NP_866627.1 PMID: 11259647 best DB hits: BLAST: gb:AAA93130.1; (U09139) chitinase precursor [Aeromonas; E=0.63 gb:AAG09437.1; AF181852_1 (AF181852) chitinase 92 [Aeromonas; E=0.63 PFAM: PF00801; PKD domain; E=0.25 PF00028; Cadherin domain; E=0.047 NP_866628.1 PMID: 8955401 PMID: 9427544 best DB hits: BLAST: embl:CAA65785.1; (X97119) pectate lyase [Erwinia chrysanthemi]; E=5e-29 pir:JC6502; pectate lyase (EC 4.2.2.2) - Amycolata sp ----- gb:; E=0.026 gb:AAF23285.1; AC016661_10 (AC016661) pectate lyase; E=0.037 NP_866629.1 PMID: 10360571 best DB hits: BLAST: pir:F72395; hypothetical protein TM0280 - Thermotoga maritima; E=1e-102 gb:AAG58726.1; AE005584_8 (AE005584) orf; hypothetical protein; E=2e-82 ddbj:BAB05596.1; (AP001513) BH1877~unknown conserved protein in; E=6e-15 NP_866630.1 PMID: 8955401 PMID: 1983191 best DB hits: BLAST: pir:JC6502; pectate lyase (EC 4.2.2.2) - Amycolata sp ----- gb:; E=6e-30 pir:D72376; pectate lyase - Thermotoga maritima (strain MSB8); E=1e-26 ddbj:BAA96477.1; (AB041769) pectate lyase Pel-4A [Bacillus sp.; E=3e-25 PFAM: PF00544; Pectate lyase; E=8.6e-31 NP_866631.1 best DB hits: BLAST: gb:AAB90381.1; (AE001045) D-arabino 3-hexulose 6-phosphate; E=1e-33 pir:B71209; probable D-arabino 3-hexulose 6-phosphate formaldehyde; E=8e-33 pir:C75022; d-arabino 3-hexulose 6-phosphate formaldehyde lyase; E=7e-28 COG: AF0861_1; COG0269 3-hexulose-6-phosphate synthase and related; E=1e-33 sgaH; COG0269 3-hexulose-6-phosphate synthase and related proteins; E=4e-10 VCA0242; COG0269 3-hexulose-6-phosphate synthase and related; E=3e-09 PFAM: PF00834; Ribulose-phosphate 3 epimerase; E=0.56 PF02581; Thiamine monophosphate synthas; E=0.01 NP_866632.1 PMID: 3622514 best DB hits: BLAST: ddbj:BAA75341.1; (AB011837) sorbitol dehydrogenase [Bacillus; E=8e-44 swissprot:P77539; YDJL_ECOLI HYPOTHETICAL ZINC-TYPE ALCOHOL; E=7e-35 gb:AAG56765.1; AE005400_10 (AE005400) oxidoreductase; E=9e-35 COG: BH0189; COG1063 Threonine dehydrogenase and related Zn-dependent; E=7e-45 PFAM: PF00107; Zinc-binding dehydrogenases; E=6.5e-60 NP_866633.1 PMID: 11997336 best DB hits: BLAST: swissprot:P42418; IOLH_BACSU IOLH PROTEIN ----- pir: H69645; E=0.061 swissprot:P49304; MOCC_RHIME RHIZOPINE CATABOLISM PROTEIN MOCC; E=0.20 pir:F72378; conserved hypothetical protein - Thermotoga maritima; E=0.28 COG: BS_iolH; COG1082 Predicted endonucleases; E=0.006 PFAM: PF00631; GGL domain; E=0.31 NP_866634.1 PMID: 7610479 best DB hits: BLAST: embl:CAB09645.1; (Z96801) hypothetical protein MLCL581.26; E=7e-04 pir:H81408; probable periplasmic protein Cj0609c [imported] -; E=0.41 PFAM: PF00657; Lipase/Acylhydrolase with GDSL-; E=0.63 PF00815; Histidinol dehydrogenase; E=0.3 NP_866637.1 PMID: 8159166 best DB hits: BLAST: pir:S41581; probable phosphoesterase (EC 3.1.-.-) U - Methanothermus; E=6e-04 pir:T35512; hypothetical protein SC6G10.03c - Streptomyces; E=0.002 pir:H69118; probable phosphoesterase (EC 3.1.-.-) MTH1882 -; E=0.016 COG: MTH1882; COG2129 Predicted phosphoesterases, related to the Icc; E=0.001 NP_866638.1 best DB hits: BLAST: embl:CAB75387.1; (AL139298) hypothetical protein [Streptomyces; E=1e-110 pir:H72336; conserved hypothetical protein - Thermotoga maritima; E=1e-103 pir:S77440; hypothetical protein sll1084 - Synechocystis sp. (strain; E=2e-93 COG: TM0770; COG1032 Fe-S oxidoreductases family 2; E=1e-104 slr0082; COG0621 Fe-S oxidoreductases family 1; E=0.008 NP_866639.1 PMID: 7868621 best DB hits: BLAST: swissprot:P42436; NASE_BACSU ASSIMILATORY NITRITE REDUCTASE; E=9e-09 pir:T35995; probable dioxygenase (EC 1.14.12.-) Rieske iron-sulfur; E=1e-08 ddbj:BAB04333.1; (AP001509) assimilatory nitrite reductase; E=1e-08 COG: BS_nasE; COG2146 Ferredoxin subunits of nitrite reductase and; E=9e-10 BH1672; COG0723 Rieske Fe-S protein; E=6e-05 XF1472; COG2146 Ferredoxin subunits of nitrite reductase and; E=6e-04 PFAM: PF00355; Rieske [2Fe-2S] domain; E=7.6e-20 NP_866640.1 PMID: 11823852 best DB hits: BLAST: pir:A64656; hypothetical protein HP1089 - Helicobacter pylori; E=0.12 pir:C71944; hypothetical protein jhp0336 - Helicobacter pylori; E=0.76 ddbj:BAB06700.1; (AP001517) BH2981~unknown [Bacillus halodurans]; E=0.77 NP_866641.1 best DB hits: BLAST: pir:F81294; probable helicase Cj1481c [imported] - Campylobacter; E=5e-27 pir:A71805; probable ATP-dependent helicase - Helicobacter pylori; E=5e-15 pir:A64714; helicase - Helicobacter pylori (strain 26695) -----; E=2e-14 COG: Cj1481c; COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit; E=4e-28 VC0190; COG0210 Superfamily I DNA and RNA helicases; E=3e-09 CT639; COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit; E=4e-08 PFAM: PF00580; UvrD/REP helicase; E=2.9e-18 PF01443; Viral (Superfamily 1) RNA hel; E=0.085 NP_866642.1 PMID: 8253675 best DB hits: BLAST: pir:E75550; probable transposase - Deinococcus radiodurans (strain; E=6e-06 pir:F64571; hypothetical protein SARA17 - Helicobacter pylori; E=3e-05 gb:AAG59402.1; AE005653_3 (AE005653) transposase; E=6e-05 COG: DR0177; COG1943 Predicted transposase; E=5e-07 PFAM: PF01797; Transposase IS200 like; E=7.8e-08 NP_866644.1 PMID: 11292750 best DB hits: BLAST: swissprot:P03835; YI41_ECOLI INSERTION ELEMENT IS4 HYPOTHETICAL; E=0.030 embl:CAA57483.1; (X81894) ORF [Enterobacter agglomerans]; E=0.064 COG: yi41; COG3385 Predicted transposase; E=0.003 NP_866648.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_866651.1 PMID: 1991710 best DB hits: BLAST: swissprot:O67866; FLAV_AQUAE FLAVODOXIN ----- pir: F70479; E=3e-48 swissprot:P18855; FLAV_CLOAB FLAVODOXIN ----- pir: A38177; E=2e-13 pir:G82110; Trp repressor-binding protein VC2166 [imported] - Vibrio; E=6e-13 COG: aq_2096; COG0655 Multimeric flavodoxin WrbA; E=3e-49 AF1520; COG0426 Uncharacterized flavoproteins; E=0.006 PFAM: PF00258; Flavodoxin; E=1.4e-08 NP_866652.1 best DB hits: BLAST: gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=4e-10 gb:AAC31181.1; (AF076240) unknown [Rhizobium leguminosarum bv.; E=2e-09 ddbj:BAB05884.1; (AP001514) BH2165~unknown conserved protein; E=6e-09 COG: BH2165; COG0673 Predicted dehydrogenases and related proteins; E=5e-10 PFAM: PF01408; Oxidoreductase, NAD-bin; E=3.1e-15 NP_866653.1 PMID: 2105293 best DB hits: BLAST: gb:AAG60934.1; AF322013_53 (AF322013) ID556 [Bradyrhizobium; E=9e-68 gb:AAG60822.1; AF322012_127 (AF322013) ID270 [Bradyrhizobium; E=4e-67 swissprot:P17867; CISA_BACSU DNA RECOMBINASE -----; E=1e-30 COG: BS_spoIVCA; COG1961 Site-specific recombinases, DNA invertase Pin; E=1e-31 pin; COG1961 Site-specific recombinases, DNA invertase Pin homologs; E=4e-04 PH1174; COG1961 Site-specific recombinases, DNA invertase Pin; E=0.003 PFAM: PF00239; Resolvase class of site-specific re; E=4.3e-18 NP_866656.1 PMID: 11759840 best DB hits: BLAST: embl:CAB93418.1; (AL357524) transposase [Streptomyces; E=0.60 NP_866659.1 best DB hits: PFAM: PF00515; TPR Domain; E=0.61 NP_866661.1 PMID: 10336424 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=2e-36 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=2e-34 gb:AAF30402.1; AF109924_1 (AF109924) sulfatase 1 precursor [Helix; E=1e-33 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=1e-29 PFAM: PF02418; Integral membrane protein of unk; E=0.83 PF00884; Sulfatase; E=6.6e-32 NP_866662.1 PMID: 8063104 best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=9e-06 swissprot:P54741; AFSK_STRCO SERINETHREONINE PROTEIN KINASE AFSK; E=0.007 swissprot:P54742; AFSK_STRGR SERINETHREONINE PROTEIN KINASE AFSK; E=0.007 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=8e-07 PFAM: PF01011; PQQ enzyme repeat; E=0.0098 NP_866663.1 PMID: 10950929 best DB hits: BLAST: pir:F70837; probable sulfatase (EC 3.1.6.-) atsG - Mycobacterium; E=8e-23 gb:AAG41945.1; AF304053_1 (AF304053) heparan N-sulfatase [Mus; E=1e-20 gb:AAF29467.1; (AF156255) N-sulfoglucosamine sulfohydrolase [Mus; E=2e-20 COG: Rv0296c; COG3119 Arylsulfatase A and related enzymes; E=8e-24 PFAM: PF00884; Sulfatase; E=5.2e-13 NP_866669.1 PMID: 3106153 best DB hits: BLAST: pir:A81199; prephenate dehydrogenase, probable NMB0440 [imported] -; E=2e-23 pir:A81775; probable oxidoreductase NMA2045 [imported] - Neisseria; E=6e-23 gb:AAF06694.1; AF163663_19 (AF058689) prephenate; E=3e-22 COG: NMB0440; COG0287 Prephenate dehydrogenase; E=2e-24 PFAM: PF02153; Prephenate dehydrogenase; E=5.3e-69 NP_866670.1 PMID: 2659070 PMID: 2531746 best DB hits: BLAST: gb:AAB89311.1; (AE000969) phosphoribosylformylglycinamidine; E=1e-113 embl:CAC12194.1; (AL445066) phosphoribosylformylglycinamidine; E=1e-102 embl:CAB56359.1; (AL118514) phosphoribosyl formylglycinamidine; E=1e-80 COG: AF1940; COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase,; E=1e-114 NMB1996_1; COG0046 Phosphoribosylformylglycinamidine (FGAM); E=2e-52 TM1246; COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase,; E=1e-50 PFAM: PF00586; AIR synthase related protein, N-term; E=1e-24 PF02769; AIR synthase related protein, C-term; E=1.7e-22 PF00586; AIR synthase related protein, N-term; E=0.28 NP_866672.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_866675.1 best DB hits: BLAST: embl:CAB76850.1; (AL049698) dJ470B24.1.3 (myeloidlymphoid or; E=0.73 embl:CAB76849.1; (AL049698) dJ470B24.1.5 (myeloidlymphoid or; E=0.78 NP_866676.1 PMID: 8034591 PMID: 8522195 best DB hits: BLAST: ddbj:BAB05136.1; (AP001512) 5-formyltetrahydrofolate cyclo-ligase; E=7e-17 pir:C70449; conserved hypothetical protein aq_1731 - Aquifex; E=3e-16 swissprot:P54491; YQGN_BACSU HYPOTHETICAL 21.4 KD PROTEIN IN; E=8e-14 COG: BH1417; COG0212 5-formyltetrahydrofolate cyclo-ligase; E=7e-18 PFAM: PF01812; 5-formyltetrahydrofolate cyclo; E=1.4e-38 NP_866677.1 PMID: 1659648 best DB hits: BLAST: gb:AAF01486.1; AF137263_5 (AF137263) L-fuculose kinase; E=1e-84 ddbj:BAB05270.1; (AP001512) rhamnulokinase [Bacillus halodurans]; E=3e-79 pir:E70014; rhamnulokinase (EC 2.7.1.5) yulC - Bacillus subtilis; E=8e-75 COG: BH1551; COG1070 Sugar (pentulose and hexulose) kinases; E=2e-80 VNG1967G; COG0554 Glycerol kinase; E=2e-04 BH2676; COG1070 Sugar (pentulose and hexulose) kinases; E=0.004 PFAM: PF00370; FGGY family of carbohydrate kin; E=7.3e-12 PF02782; FGGY family of carbohydrate kin; E=0.11 NP_866682.1 PMID: 6266829 best DB hits: BLAST: swissprot:Q9Z9A0; RPOB_CHLPN DNA-DIRECTED RNA POLYMERASE BETA CHAIN; E=0.0 pir:F81548; DNA-directed RNA polymerase, beta chain CP0694 [imported]; E=0.0 ddbj:BAA98291.1; (AP002545) RNA polymerase beta [Chlamydophila; E=0.0 COG: CPn0081; COG0085 DNA-directed RNA polymerase beta subunit/140 kD; E=0.0 CT315; COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; E=0.0 PA4270; COG0085 DNA-directed RNA polymerase beta subunit/140 kD; E=0.0 PFAM: PF01155; Hydrogenase expression/synthesi; E=0.17 PF00562; RNA polymerase beta subunit; E=0 NP_866684.1 PMID: 3219133 best DB hits: BLAST: swissprot:P19176; RPOC_PSEPU DNA-DIRECTED RNA POLYMERASE BETA' CHAIN; E=0.0 swissprot:P00577; RPOC_ECOLI DNA-DIRECTED RNA POLYMERASE BETA' CHAIN; E=0.0 prf:0808241A; polymerase beta',RNA [Escherichia coli]; E=0.0 COG: rpoC; COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit; E=0.0 BU033; COG0086 DNA-directed RNA polymerase beta' subunit/160 kD; E=0.0 PFAM: PF00623; RNA polymerase alpha subunit; E=2.3e-275 PF01854; RNA polymerase A/beta'/A sub; E=8.5e-10 PF01333; Apocytochrome F; E=0.26 NP_866685.1 PMID: 2303452 best DB hits: BLAST: gb:AAF49287.1; (AE003522) CG7402 gene product [Drosophila; E=1e-37 gb:AAF30402.1; AF109924_1 (AF109924) sulfatase 1 precursor [Helix; E=2e-37 gb:AAF49302.1; (AE003522) CG5584 gene product [Drosophila; E=9e-37 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=2e-28 PFAM: PF00884; Sulfatase; E=1.5e-44 NP_866687.1 PMID: 11743193 best DB hits: PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=0.00066 NP_866688.1 PMID: 9406417 PMID: 11157277 best DB hits: BLAST: pir:T18266; cycloinulo-oligosaccharide fructanotransferase (EC; E=0.10 gb:AAG47946.1; AF222787_1 (AF222787) cycloinulo-oligosaccharide; E=0.22 NP_866689.1 PMID: 8244397 best DB hits: BLAST: gb:AAA16877.1; (L13329) iduronate-2-sulfatase [Homo sapiens]; E=5e-57 gb:AAB33747.1; iduronate-2-sulfatase, IDS {EC 3.1.6.13} [human,; E=2e-56 gb:AAA37880.1; (L07921) iduronate sulfatase [Mus musculus]; E=5e-54 COG: PA0031; COG3119 Arylsulfatase A and related enzymes; E=1e-30 PA0924; COG3083 Predicted hydrolase of alkaline phosphatase; E=9e-05 BS_yfnI; COG1368 Phosphoglycerol transferase and related proteins,; E=0.001 PFAM: PF00884; Sulfatase; E=2.6e-28 PF02418; Integral membrane protein of unknow; E=0.71 PF00884; Sulfatase; E=3.1e-27 NP_866692.1 PMID: 10360571 best DB hits: BLAST: pir:D72313; hypothetical protein TM0945 - Thermotoga maritima; E=2e-46 pir:D82689; conserved hypothetical protein XF1384 [imported] -; E=4e-22 gb:AAF04097.1; AF188291_3 (AF188291) PqaA [Salmonella typhi]; E=2e-17 NP_866693.1 best DB hits: PFAM: PF02822; Antistasin family; E=0.39 NP_866694.1 PMID: 10360571 best DB hits: BLAST: pir:A72342; conserved hypothetical protein - Thermotoga maritima; E=9e-41 pir:H70472; conserved hypothetical protein aq_2013 - Aquifex; E=2e-30 pir:B71118; hypothetical protein PH0713 - Pyrococcus horikoshii; E=2e-16 COG: TM0723; COG0432 Uncharacterized ACR; E=9e-42 PFAM: PF01894; Uncharacterised protein family UPF00; E=9.2e-38 NP_866696.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene NP_866698.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation NP_866699.1 PMID: 8575452 best DB hits: BLAST: swissprot:O87391; GLXC_RHIME GLXC PROTEIN ----- gb: AAC62221.1; E=1e-15 pir:C69123; tungsten formylmethanofuran dehydrogenase, subunit C; E=7e-13 swissprot:Q58571; FWDC_METJA TUNGSTEN-CONTAINING; E=1e-11 COG: MTH192; COG0070 Glutamate synthetase domain 3; E=7e-14 MJ1171; COG2218 Formylmethanofuran dehydrogenase subunit C; E=1e-12 MJ1350; COG0070 Glutamate synthetase domain 3; E=5e-08 PFAM: PF01493; Domain of unknown function DUF14; E=2.1e-09 NP_866701.1 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase NP_866702.1 PMID: 8260624 best DB hits: BLAST: embl:CAB08432.1; (Z95151) Icc [Mycobacterium leprae]; E=0.062 pir:S44374; phosphoglycerate mutase (EC 5.4.2.1) - castor bean; E=0.20 swissprot:Q42908; PMGI_MESCR 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT; E=0.22 NP_866707.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_866716.1 PMID: 7699720 best DB hits: BLAST: pir:D83041; probable two-component response regulator PA4843; E=4e-20 pir:F82960; hypothetical protein PA5487 [imported] - Pseudomonas; E=5e-18 pir:A82428; sensory boxGGDEF family protein VCA0697 [imported] -; E=4e-17 COG: PA5487; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=5e-19 PFAM: PF00072; Response regulator receiver doma; E=3.1e-13 PF00990; GGDEF domain; E=3.1e-35 NP_866718.1 PMID: 10567266 best DB hits: PFAM: PF00561; alpha/beta hydrolase fold; E=0.1 NP_866719.1 PMID: 1645442 best DB hits: BLAST: pir:S75664; sensory transduction system regulatory protein slr1983 -; E=8e-04 pir:G83183; probable chemotaxis sensoreffector fusion protein; E=0.002 pir:D82696; hypothetical protein XF1330 [imported] - Xylella; E=0.005 COG: slr1983_2; COG0784 CheY-like receiver domains; E=8e-05 jhp1283; COG0745 Response regulators consisting of a CheY-like; E=8e-04 BS_yufM; COG2197 Response regulators consisting of a CheY-like; E=0.002 PFAM: PF00072; Response regulator receiver doma; E=9.9e-06 NP_866720.1 PMID: 1454550 best DB hits: BLAST: embl:CAB94653.1; (AL359215) two-component system; E=3e-12 pir:D72374; response regulator - Thermotoga maritima (strain MSB8); E=2e-11 embl:CAC04498.1; (AL391588) two-component system; E=5e-11 COG: TM0468; COG0784 CheY-like receiver domains; E=2e-12 BS_phoP; COG0745 Response regulators consisting of a CheY-like; E=3e-11 slr0322_3; COG0784 CheY-like receiver domains; E=3e-10 PFAM: PF00072; Response regulator receiver doma; E=9.1e-23 NP_866724.1 PMID: 1454550 best DB hits: BLAST: pir:T17197; adenylate cyclase homolog - Spirulina platensis -----; E=2e-09 gb:AAD30120.2; (AF135389) DNA binding response regulator RpaA; E=2e-08 pir:S75923; sensory transduction system regulatory protein sll1555 -; E=4e-08 COG: slr2024; COG0784 CheY-like receiver domains; E=9e-09 slr0115; COG0745 Response regulators consisting of a CheY-like; E=1e-08 TP0519; COG2204 AAA superfamily ATPases with N-terminal receiver; E=2e-08 PFAM: PF00072; Response regulator receiver doma; E=2.4e-10 NP_866725.1 PMID: 7699720 best DB hits: BLAST: embl:CAB88489.1; (AL353816) two-component systen; E=1e-15 gb:AAB06615.1; (U53173) MviA [Salmonella typhimurium]; E=2e-14 gb:AAD30120.2; (AF135389) DNA binding response regulator RpaA; E=1e-13 COG: slr0115; COG0745 Response regulators consisting of a CheY-like; E=1e-13 XF1952_3; COG0784 CheY-like receiver domains; E=3e-13 Rv0981; COG0745 Response regulators consisting of a CheY-like; E=3e-12 PFAM: PF00072; Response regulator receiver doma; E=2.4e-27 NP_866726.1 PMID: 3142862 best DB hits: BLAST: swissprot:P23545; PHOR_BACSU ALKALINE PHOSPHATASE SYNTHESIS SENSOR; E=1e-28 pir:S75514; sensory transduction histidine kinase slr1324 -; E=2e-27 pir:E83529; sensorresponse regulator hybrid PA0928 [imported] -; E=6e-25 COG: BS_phoR_3; COG0642 Sensory transduction histidine kinases; E=1e-29 PFAM: PF00072; Response regulator receiver do; E=4.5e-14 PF00512; His Kinase A (phosphoacceptor); E=6.3e-16 PF02518; Histidine kinase-, DNA gyrase; E=5.3e-31 NP_866727.1 PMID: 7699720 best DB hits: BLAST: ddbj:BAA14000.1; (D89625) adenylate cyclase [Anabaena sp.]; E=2e-12 pir:T17197; adenylate cyclase homolog - Spirulina platensis -----; E=8e-12 gb:AAB89775.1; (AE001001) response regulator [Archaeoglobus; E=7e-10 COG: AF1473; COG0784 CheY-like receiver domains; E=7e-11 slr0115; COG0745 Response regulators consisting of a CheY-like; E=2e-10 sll1555_1; COG0784 CheY-like receiver domains; E=6e-10 PFAM: PF00072; Response regulator receiver doma; E=2.3e-16 NP_866729.1 PMID: 10200516 best DB hits: BLAST: swissprot:Q94775; GBLP_TRYBB GUANINE NUCLEOTIDE-BINDING PROTEIN; E=0.14 pir:T47324; hypothetical protein T12K4.110 - Arabidopsis thaliana; E=0.29 gb:AAC72849.1; (AF100286) activated protein kinase C receptor; E=0.58 PFAM: PF00400; WD domain, G-beta repeat; E=0.0071 NP_866730.1 best DB hits: BLAST: pir:F82263; probable multidrug resistance protein VC0914 [imported] -; E=1e-47 pir:H82300; probable multidrug resistance protein VC0629 [imported] -; E=6e-47 pir:F71727; acriflavin resistance protein D (acrD) RP170 - Rickettsia; E=3e-45 COG: VC0914; COG0841 Cation/multidrug efflux pump; E=1e-48 PFAM: PF00873; AcrB/AcrD/AcrF family; E=1.8e-14 NP_866731.1 best DB hits: BLAST: pir:A83342; conserved hypothetical protein PA2430 [imported] -; E=4e-07 swissprot:P32716; YJCR_ECOLI HYPOTHETICAL 36.9 KDA PROTEIN IN; E=2e-05 gb:AAG59280.1; AE005641_5 (AE005641) membrane protein; E=2e-05 COG: PA2430; COG1566 Multidrug resistance efflux pump; E=4e-08 HIN0311; COG0845 Membrane-fusion protein; E=0.002 PFAM: PF00529; HlyD family secretion protein; E=0.00042 NP_866733.1 best DB hits: BLAST: ddbj:BAB07052.1; (AP001518) BH3333~unknown conserved protein in; E=8e-21 embl:CAC10313.1; (AL442629) hypothetical protein SCH63.22c; E=0.76 NP_866734.1 PMID: 9665876 best DB hits: BLAST: swissprot:O83487; Y474_TREPA HYPOTHETICAL PROTEIN TP0474 -----; E=5e-54 swissprot:Q51423; Y964_PSEAE HYPOTHETICAL PROTEIN PA0964 -----; E=2e-53 swissprot:O67517; YF75_AQUAE HYPOTHETICAL PROTEIN AQ_1575 -----; E=5e-53 COG: TP0474; COG0217 Uncharacterized ACR; E=4e-55 PFAM: PF01709; Domain of unknown function DUF28; E=8e-105 NP_866737.1 PMID: 7535280 PMID: 9422595 best DB hits: BLAST: ddbj:BAB06130.1; (AP001515) ribosome-binding factor A [Bacillus; E=4e-13 swissprot:P32731; RBFA_BACSU RIBOSOME-BINDING FACTOR A (P15B; E=2e-11 swissprot:Q55625; RBFA_SYNY3 RIBOSOME-BINDING FACTOR A -----; E=2e-09 COG: BH2411; COG0858 Ribosome-binding factor A; E=4e-14 PFAM: PF02033; Ribosome-binding factor A; E=1.7e-28 NP_866738.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex NP_866741.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination NP_866744.1 best DB hits: BLAST: ddbj:BAA77335.1; (AB019494) IDN3 [Homo sapiens]; E=0.21 ddbj:BAA77349.1; (AB019602) IDN3-B [Homo sapiens]; E=0.21 NP_866745.1 PMID: 8407845 best DB hits: BLAST: gb:AAC70108.1; (AF074613) type II secretion protein [Escherichia; E=2e-06 swissprot:P34026; GSPK_XANCP GENERAL SECRETION PATHWAY PROTEIN K; E=5e-04 swissprot:P31706; GSPK_ERWCA GENERAL SECRETION PATHWAY PROTEIN K; E=0.002 COG: XF1523; COG3156 General secretion pathway protein K; E=2e-04 NP_866747.1 PMID: 12024217 NP_866748.1 best DB hits: PFAM: PF02501; Bacterial type II secretion system p; E=0.08 NP_866749.1 PMID: 1640836 PMID: 8407845 best DB hits: BLAST: pir:B70338; general secretion pathway protein G - Aquifex aeolicus; E=0.065 swissprot:P31733; GSPG_AERHY GENERAL SECRETION PATHWAY PROTEIN G; E=0.29 pir:B82670; general secretory pathway protein G precursor XF1519; E=0.83 COG: aq_418; COG2165 General secretory pathway proteins G and H and; E=0.006 NP_866752.1 PMID: 11759840 best DB hits: BLAST: embl:CAC19834.1; (AJ401093) hypothetical protein [Actinomyces; E=0.17 NP_866753.1 PMID: 8760912 best DB hits: BLAST: swissprot:P42981; YPJG_BACSU HYPOTHETICAL 24.8 KD PROTEIN IN; E=9e-17 ddbj:BAB05401.1; (AP001512) BH1682~unknown conserved protein; E=2e-15 gb:AAC14880.1; (AF060080) hypothetical protein [Chlorobium; E=6e-15 COG: BS_ypjG; COG2120 Uncharacterized proteins, LmbE homologs; E=9e-18 PFAM: PF02585; Uncharacterized LmbE-like protein, C; E=2.5e-20 NP_866755.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content NP_866766.1 PMID: 2549854 best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=0.002 pir:T29127; hypothetical protein SC1F2.18 - Streptomyces coelicolor; E=0.015 gb:AAG57622.1; AE005480_9 (AE005480) dehydrogenase; E=0.63 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=2e-04 PFAM: PF01011; PQQ enzyme repeat; E=0.49 NP_866768.1 PMID: 4863752 PMID: 7038627 best DB hits: BLAST: swissprot:P77960; TRPA_SYNY3 TRYPTOPHAN SYNTHASE ALPHA CHAIN; E=1e-45 swissprot:P11081; TRPA_PSEPU TRYPTOPHAN SYNTHASE ALPHA CHAIN; E=6e-43 swissprot:P07344; TRPA_PSEAE TRYPTOPHAN SYNTHASE ALPHA CHAIN; E=4e-42 COG: slr0966; COG0159 Tryptophan synthase alpha chain; E=1e-46 PFAM: PF00290; Tryptophan synthase alpha chain; E=3.2e-73 NP_866770.1 best DB hits: BLAST: gb:AAG37030.1; (AF288409) transcription elongation regulator; E=0.076 gb:AAK00309.1; AF315819_1 (AF315819) DNA-dependent RNA polymerase II; E=0.25 embl:CAA73326.1; (Y12790) Supt5h protein [Homo sapiens] -----; E=0.26 NP_866771.1 PMID: 8444796 best DB hits: BLAST: swissprot:P73437; FTH3_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 3; E=1e-129 pir:T31466; cell-division protein homolog ftsH - Heliobacillus; E=1e-127 pir:F83053; cell division protein FtsH PA4751 [imported] -; E=1e-123 COG: sll1463; COG0465 ATP-dependent Zn proteases; E=1e-130 PFAM: PF00158; Sigma-54 interaction domain; E=0.092 PF01057; Parvovirus non-structural pro; E=0.014 PF00910; RNA helicase; E=0.31 NP_866773.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate NP_866774.1 best DB hits: BLAST: pir:H81228; conserved hypothetical protein NMB0183 [imported] -; E=9e-16 pir:C82000; probable integral membrane protein NMA0084 [imported] -; E=1e-15 pir:C69881; conserved hypothetical protein yluC - Bacillus subtilis; E=7e-15 COG: NMB0183; COG0750 Predicted membrane-associated Zn-dependent; E=9e-17 HI0918; COG0750 Predicted membrane-associated Zn-dependent proteases; E=2e-15 yaeL; COG0750 Predicted membrane-associated Zn-dependent proteases 1; E=3e-13 PFAM: PF02163; Sterol-regulatory element bindi; E=0.03 PF00595; PDZ domain (Also known as DHR o; E=0.0064 NP_866776.1 best DB hits: BLAST: pir:E82830; conserved hypothetical protein XF0250 [imported] -; E=9e-18 gb:AAK02545.1; (AE006082) unknown [Pasteurella multocida]; E=2e-07 pir:B83243; hypothetical protein PA3222 [imported] - Pseudomonas; E=7e-04 COG: XF0250; COG0697 Predicted permeases; E=8e-19 PFAM: PF00892; Integral membrane protein DUF6; E=0.00013 NP_866777.1 best DB hits: BLAST: swissprot:Q50658; YN07_MYCTU HYPOTHETICAL 29.7 KDA PROTEIN RV2307C; E=0.002 COG: Rv2307c; COG1073 Hydrolases of the alpha/beta superfamily; E=2e-04 NP_866778.1 PMID: 1482681 best DB hits: BLAST: embl:CAB59581.1; (AL132662) possible gluconolactonase precursor; E=2e-30 swissprot:Q01578; GNL_ZYMMO GLUCONOLACTONASE PRECURSOR; E=2e-19 pir:B82698; gluconolactonase precursor XF1297 [imported] - Xylella; E=3e-19 COG: XF1297; COG3386 Uncharacterized protein; E=3e-20 NP_866779.1 best DB hits: BLAST: pir:A82381; conserved hypothetical protein VCA1077 [imported] -; E=8e-05 gb:AAD38234.1; (U17224) CarF [Pectobacterium carotovorum]; E=0.002 pir:H81703; conserved hypothetical protein TC0422 [imported] -; E=0.016 COG: VCA1077_2; COG1262 Uncharacterized BCR; E=8e-06 NP_866781.1 PMID: 12024217 best DB hits: BLAST: embl:CAB83107.1; (AJ276657) sigma factor 3 [Sinapis alba]; E=0.13 pir:B72234; RNA polymerase sigma-E factor - Thermotoga maritima; E=0.17 pir:S30404; hypothetical protein 3 - Streptomyces clavuligerus; E=0.21 PFAM: PF01046; NodD transcription activator c; E=0.2 PF00140; Sigma-70 factor; E=0.00055 PF00196; Bacterial regulatory proteins,; E=0.043 NP_866784.1 PMID: 7768349 best DB hits: BLAST: gb:AAF73695.1; (AE002226) serinethreonine-protein kinase; E=7e-39 pir:G71532; probable threoninetyrosine-specific protein kinase (EC; E=3e-38 pir:C72120; st protein kinase - Chlamydophila pneumoniae (strain; E=4e-37 COG: CT301_1; COG0515 Serine/threonine protein kinases; E=3e-39 PFAM: PF00069; Protein kinase domain; E=2.2e-27 PF00515; TPR Domain; E=0.89 PF02018; Cellulose binding domain; E=0.037 NP_866787.1 PMID: 3062174 best DB hits: BLAST: swissprot:O30723; HIS2_RHOCA PHOSPHORIBOSYL-ATP PYROPHOSPHATASE; E=2e-10 swissprot:P26722; HIS2_AZOBR PHOSPHORIBOSYL-ATP PYROPHOSPHATASE; E=6e-08 pir:D81178; phosphoribosyl-ATP cyclohydrolase NMB0603 [imported] -; E=8e-08 COG: NMB0603; COG0140 Phosphoribosyl-ATP pyrophosphohydrolase; E=8e-09 PFAM: PF01503; Phosphoribosyl-ATP pyrophosphohydrol; E=9.2e-30 NP_866788.1 PMID: 3062174 best DB hits: BLAST: swissprot:Q99145; HIS1_YARLI ATP PHOSPHORIBOSYLTRANSFERASE -----; E=2e-43 swissprot:P46586; HIS1_CANAL ATP PHOSPHORIBOSYLTRANSFERASE -----; E=6e-42 swissprot:O33256; HIS1_MYCTU ATP PHOSPHORIBOSYLTRANSFERASE -----; E=4e-41 COG: Rv2121c; COG0040 ATP phosphoribosyltransferase (histidine; E=4e-42 hisG; COG0040 ATP phosphoribosyltransferase (histidine biosynthesis); E=2e-36 VC1132; COG0040 ATP phosphoribosyltransferase (histidine; E=3e-34 PFAM: PF01634; ATP phosphoribosyltransferase; E=2e-56 NP_866791.1 PMID: 3007478 best DB hits: BLAST: swissprot:O26543; UVRA_METTH EXCINUCLEASE ABC SUBUNIT A -----; E=1e-178 ddbj:BAB07313.1; (AP001519) excinuclease ABC (subunit A) [Bacillus; E=1e-173 swissprot:Q9Z507; UVRA_STRCO EXCINUCLEASE ABC SUBUNIT A -----; E=1e-168 COG: MTH443; COG0178 Excinuclease ATPase subunit; E=1e-179 PFAM: PF00005; ABC transporter; E=0.0014 PF01583; Adenylylsulfate kinase; E=0.037 PF00485; Phosphoribulokinase / Uridine; E=0.54 NP_866792.1 best DB hits: BLAST: embl:CAB45032.1; (AL078635) large multi-functional; E=4e-32 embl:CAB58265.1; (AL121849) multi-domain protein; E=6e-30 pir:T36423; probable large, multifunctional secreted protein -; E=9e-05 NP_866795.1 best DB hits: BLAST: pir:B75319; conserved hypothetical protein - Deinococcus radiodurans; E=5e-47 gb:AAG55401.1; AE005281_4 (AE005281) orf, hypothetical protein; E=8e-17 swissprot:P75843; YCAQ_ECOLI HYPOTHETICAL 47.7 KDA PROTEIN IN; E=3e-16 COG: DR2072; COG3214 Uncharacterized BCR; E=5e-48 NP_866797.1 best DB hits: BLAST: pir:B75154; hypothetical protein PAB2408 - Pyrococcus abyssi (strain; E=0.21 PFAM: PF00515; TPR Domain; E=0.15 NP_866798.1 best DB hits: BLAST: pir:B69988; hypothetical protein ytaP - Bacillus subtilis -----; E=3e-15 ddbj:BAA81869.1; (AB026295) ESTs C19441(E10423),C99201(E10423); E=2e-08 pir:G82643; conserved hypothetical protein XF1745 [imported] -; E=0.12 PFAM: PF00969; Class II histocompatibility ant; E=0.17 NP_866799.1 best DB hits: BLAST: pir:D83595; hypothetical protein PA0398 [imported] - Pseudomonas; E=2e-40 gb:AAG45137.1; AF310895_3 (AF310895) unknown [Dictyostelium; E=5e-06 gb:AAF48683.1; (AE003504) CG9089 gene product [Drosophila; E=2e-05 COG: PA0398; COG2314 Predicted membrane protein; E=2e-41 NP_866800.1 best DB hits: BLAST: swissprot:P74120; ENGA_SYNY3 PROBABLE GTP-BINDING PROTEIN ENGA; E=7e-72 ddbj:BAA88823.1; (AB016077) phosphoglycerate dehydrogenase; E=1e-69 swissprot:P50743; ENGA_BACSU PROBABLE GTP-BINDING PROTEIN ENGA; E=6e-68 COG: slr1974; COG1160 Predicted GTPases; E=7e-73 PFAM: PF02263; Guanylate-binding protein, N-termina; E=0.84 PF01926; GTPase of unknown function; E=8.1e-11 PF02421; Ferrous iron transport protein B; E=1.4e-05 NP_866801.1 PMID: 1324872 best DB hits: BLAST: pir:E70446; N-terminus of phage SPO1 DNA polymerase - Aquifex; E=2e-28 pir:C71351; probable DNA polymerase, bacteriophage-type - syphilis; E=6e-26 pir:D75359; DNA polymerase-related protein - Deinococcus radiodurans; E=4e-24 COG: aq_1693; COG1573 Uracil-DNA glycosylase; E=2e-29 NP_866804.1 PMID: 1765107 best DB hits: BLAST: embl:CAC16707.1; (AL450289) metallopeptidase; E=2e-08 gb:AAB68919.1; (U00062) Aap1'p: argininealanine aminopeptidase; E=8e-05 swissprot:P32454; APE2_YEAST AMINOPEPTIDASE II (YSCII) -----; E=1e-04 COG: YHR047c; COG0308 Aminopeptidase N; E=8e-06 NP_866806.1 PMID: 9054507 best DB hits: BLAST: gb:AAF16005.1; AF187159_5 (AF187159) ParA [Streptomyces coelicolor; E=8e-52 pir:F70851; probable parB protein - Mycobacterium tuberculosis; E=9e-52 gb:AAC03484.1; (AF031590) Soj-like [Streptomyces coelicolor; E=2e-51 COG: Rv3918c; COG1192 ATPases involved in chromosome partitioning; E=9e-53 PFAM: PF00142; 4Fe-4S iron sulfur cluster bi; E=0.00074 PF02374; Anion-transporting ATPase; E=0.0047 PF01227; GTP cyclohydrolase I; E=0.52 NP_866809.1 best DB hits: PFAM: PF01587; Monocarboxylate transporter; E=0.39 NP_866810.1 best DB hits: BLAST: pir:A83457; conserved hypothetical protein PA1501 [imported] -; E=1e-11 gb:AAG59852.1; AF284750_1 (AF284750) HT036-ISO [Homo sapiens]; E=9e-10 swissprot:P36951; TRLC_DROME TRANSIENT RECEPTOR POTENTIAL LOCUS C; E=2e-09 COG: PA1501; COG1082 Predicted endonucleases; E=1e-12 NP_866811.1 PMID: 11337471 best DB hits: BLAST: gb:AAK05748.1; AE006395_8 (AE006395) UNKNOWN PROTEIN [Lactococcus; E=0.018 pir:G81786; Neisseria-specific antigen protein, TspA NMA2146; E=0.38 gb:AAF57761.1; (AE003801) CG5765 gene product [Drosophila; E=0.51 PFAM: PF00249; Myb-like DNA-binding domain; E=0.16 NP_866812.1 best DB hits: BLAST: pir:H81355; probable integral membrane protein Cj0832c [imported] -; E=2e-58 pir:D75220; hypothetical protein PAB2161 - Pyrococcus abyssi (strain; E=3e-54 pir:D71202; hypothetical protein PH1889 - Pyrococcus horikoshii; E=4e-52 COG: Cj0832c; COG1757 Na+/H+ antiporter; E=2e-59 NP_866813.1 PMID: 10440379 best DB hits: BLAST: swissprot:Q9WY63; FLIG_THEMA FLAGELLAR MOTOR SWITCH PROTEIN FLIG; E=3e-60 pir:G71328; probable flagellar motor switch protein (fliG-2) -; E=2e-57 swissprot:P23448; FLIG_BACSU FLAGELLAR MOTOR SWITCH PROTEIN FLIG; E=5e-57 COG: TM0220; COG1536 Flagellar motor switch protein; E=3e-61 PFAM: PF01706; FliG C-terminal domain; E=7.8e-45 NP_866815.1 PMID: 8843436 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=6e-04 embl:CAB94634.1; (AL359215) secreted glycosyl hydrolase.; E=7e-04 embl:CAB45032.1; (AL078635) large multi-functional; E=0.055 NP_866816.1 PMID: 2180903 best DB hits: BLAST: embl:CAA73938.1; (Y13616) degP [Bradyrhizobium japonicum]; E=2e-23 gb:AAF87931.1; AF163841_10 (AF163841) serine protease; E=4e-22 swissprot:P54925; DEGP_BARHE PROBABLE PERIPLASMIC SERINE PROTEASE; E=7e-21 COG: slr1204; COG0265 Trypsin-like serine proteases, typically; E=1e-19 htrA; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=1e-18 BB0104; COG0265 Trypsin-like serine proteases, typically; E=2e-18 PFAM: PF00089; Trypsin; E=4.9e-10 PF00595; PDZ domain (Also known as DHR or GLG; E=0.0022 NP_866817.1 PMID: 8905231 best DB hits: BLAST: swissprot:P42349; YC42_SYNY3 HYPOTHETICAL METHYLTRANSFERASE; E=1e-58 swissprot:Q55914; Y309_SYNY3 HYPOTHETICAL METHYLTRANSFERASE; E=4e-27 pir:E72242; Mg-protoporphyrin IX monomethyl ester oxidative; E=3e-11 COG: sll1242; COG1032 Fe-S oxidoreductases family 2; E=9e-60 PFAM: PF00750; tRNA synthetases class I (R); E=0.67 NP_866821.1 PMID: 2643092 PMID: 3326786 best DB hits: BLAST: ddbj:BAA12742.1; (D85230) small subunit of NADH-dependent; E=1e-163 pir:T49818; probable glutamate synthase (NADPH) [imported] -; E=1e-162 pir:S74625; NADH-glutamate synthase small chain gltD - Synechocystis; E=1e-161 COG: sll1027; COG0493 NADPH-dependent glutamate synthase beta chain and; E=1e-162 PFAM: PF01494; FAD binding domain; E=0.013 PF02254; KTN NAD-binding domain; E=0.036 PF00984; UDP-glucose/GDP-mannose dehydr; E=0.28 NP_866822.1 PMID: 2643092 PMID: 3326786 best DB hits: BLAST: swissprot:Q06434; GLSF_ANTSP FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE; E=0.0 swissprot:P23225; GLSF_MAIZE FERREDOXIN-DEPENDENT GLUTAMATE; E=0.0 swissprot:Q03460; GLSN_MEDSA GLUTAMATE SYNTHASE [NADH], CHLOROPLAST; E=0.0 COG: sll1502_2; COG0069 Glutamate synthetase domain 2; E=0.0 sll1502_1; COG0067 Glutamate synthetase domain 1; E=1e-118 PFAM: PF01645; Conserved region in glutamate; E=5.5e-235 PF01493; Domain of unknown function DU; E=4.2e-95 NP_866823.1 PMID: 3413113 best DB hits: BLAST: swissprot:Q9X725; OXYR_ERWCH HYDROGEN PEROXIDE-INDUCIBLE GENES; E=1e-25 swissprot:P71318; OXYR_ERWCA HYDROGEN PEROXIDE-INDUCIBLE GENES; E=1e-25 swissprot:P44418; OXYR_HAEIN HYDROGEN PEROXIDE-INDUCIBLE GENES; E=3e-25 COG: HI0571; COG0583 Transcriptional regulator; E=2e-26 PFAM: PF00126; Bacterial regulatory helix-turn-heli; E=9.6e-37 NP_866824.1 best DB hits: BLAST: gb:AAB81983.1; (AF025662) unknown [Vibrio cholerae]; E=7e-18 ddbj:BAB02723.1; (AB022216) gene_id:MGD8.2~unknown protein; E=1e-11 pir:T09703; pop3 protein - western balsam poplar x cottonwood; E=5e-08 NP_866825.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_866827.1 best DB hits: BLAST: gb:AAD04331.1; (AF062404) calpain [Drosophila melanogaster]; E=0.001 gb:AAF50189.1; (AE003550) CalpB gene product [Drosophila; E=0.001 NP_866828.1 PMID: 10622725 best DB hits: BLAST: pir:S76565; hypothetical protein - Synechocystis sp. (strain PCC; E=7e-14 pir:S76179; hypothetical protein - Synechocystis sp. (strain PCC; E=2e-12 ddbj:BAB06639.1; (AP001517) BH2920~unknown conserved protein; E=2e-12 COG: slr0192; COG0607 Rhodanese-related sulfurtransferases; E=7e-15 yceA; COG1054 Uncharacterized enzyme related to sulfurtransferases; E=4e-04 PFAM: PF00581; Rhodanese-like domain; E=4.2e-17 NP_866829.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers NP_866830.1 PMID: 9130712 best DB hits: BLAST: pir:A72340; serinethreonine protein phosphatase - Thermotoga; E=3e-30 gb:AAB68789.1; (U97022) orf; similar to serinethreonine protein; E=4e-26 gb:AAC46052.1; (U80887) serinethreonine protein phosphatase 1; E=1e-20 COG: TM0742; COG0639 Diadenosine tetraphosphatase and related; E=2e-31 PFAM: PF00149; Ser/Thr protein phosphatase; E=0.15 NP_866831.1 best DB hits: BLAST: embl:CAB72194.1; (AL138851) hypothetical protein SCE59.07c; E=3e-10 gb:AAG15555.1; (AY007523) AlgH [Pseudomonas fluorescens]; E=6e-06 pir:C83596; conserved hypothetical protein PA0405 [imported] -; E=6e-06 COG: PA0405; COG1678 transcriptional regulator; E=6e-07 PFAM: PF02622; Uncharacterized ACR, COG1678; E=4.1e-12 NP_866833.1 PMID: 1551888 PMID: 10593943 best DB hits: BLAST: pir:C81029; 3-oxoacyl-(acyl-carrier-protein) synthase III NMB1916; E=7e-41 gb:AAK04869.1; AE006310_11 (AE006310); E=1e-39 pir:H82633; beta-ketoacyl-[ACP] synthase III XF1817 [imported] -; E=3e-39 COG: NMB1916; COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III; E=7e-42 PFAM: PF02797; Chalcone and stilbene synthas; E=0.31 NP_866834.1 PMID: 2211496 best DB hits: BLAST: gb:AAG30851.1; AF296129_1 (AF296129) trigger factor [Aquifex; E=4e-23 swissprot:O67358; TIG_AQUAE TRIGGER FACTOR (TF) ----- pir:; E=8e-23 swissprot:O53189; TIG_MYCTU TRIGGER FACTOR (TF) ----- pir:; E=1e-20 COG: aq_1340; COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase; E=7e-24 tig; COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger; E=5e-20 BS_tig; COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase; E=8e-20 NP_866835.1 PMID: 9389475 best DB hits: BLAST: gb:AAB89060.1; (AE000954) conserved hypothetical protein; E=7e-11 gb:AAD23399.1; AF110772_1 (AF110772) unknown [Streptomyces; E=1e-10 pir:G69054; conserved hypothetical protein MTH141 - Methanobacterium; E=1e-10 COG: AF2196; COG1891 Uncharacterized ArCR; E=7e-12 NP_866836.1 PMID: 3041371 best DB hits: BLAST: gb:AAG56793.1; AE005403_4 (AE005403) RNase D, processes tRNA; E=2e-32 pir:A83483; ribonuclease D PA1294 [imported] - Pseudomonas; E=3e-32 swissprot:P09155; RND_ECOLI RIBONUCLEASE D (RNASE D) -----; E=7e-32 COG: PA1294; COG0349 Ribonuclease D; E=3e-33 aq_1967; COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase; E=3e-08 PFAM: PF01612; 3'-5' exonuclease; E=2e-31 PF00570; HRDC domain; E=0.00016 NP_866837.1 best DB hits: BLAST: gb:AAF82144.1; AC034256_8 (AC034256) Contains similarity to F-box; E=3e-07 pir:T15864; hypothetical protein C56E6.6 - Caenorhabditis elegans; E=0.006 embl:CAB95333.1; (AL359782) possible adenylate cyclase; E=0.025 NP_866839.1 PMID: 8250549 best DB hits: BLAST: swissprot:P36572; BIOD_SERMA DETHIOBIOTIN SYNTHETASE (DETHIOBIOTIN; E=8e-20 swissprot:P53558; BIOD_BACSU DETHIOBIOTIN SYNTHETASE (DETHIOBIOTIN; E=1e-19 gb:AAG55149.1; AE005258_13 (AE005258) dethiobiotin synthetase; E=1e-18 COG: BS_bioD; COG0132 Dethiobiotin synthetase; E=1e-20 PFAM: PF01656; Cobyrinic acid a,c-diamide synthase; E=0.077 NP_866840.1 PMID: 8449931 best DB hits: BLAST: pir:H82556; beta-alanine synthetase XF2443 [imported] - Xylella; E=4e-78 pir:B81369; probable hydrolase Cj0947c [imported] - Campylobacter; E=2e-73 pir:F71901; hypothetical protein jhp0694 - Helicobacter pylori; E=2e-69 COG: XF2443; COG0388 Predicted amidohydrolase; E=4e-79 PFAM: PF00795; Carbon-nitrogen hydrolase; E=8.8e-98 NP_866841.1 PMID: 8002619 PMID: 10747806 best DB hits: BLAST: pir:F81092; extragenic suppressor protein SuhB NMB1347 [imported] -; E=3e-45 pir:B81848; inositol monophosphate family protein NMA1559 [imported]; E=1e-44 pir:C83169; extragenic suppressor protein SuhB PA3818 [imported] -; E=3e-42 COG: NMB1347; COG0483 Archaeal fructose-1,6-bisphosphatase and related; E=3e-46 PFAM: PF00459; Inositol monophosphatase; E=1.4e-70 NP_866842.1 PMID: 8384715 best DB hits: BLAST: swissprot:P14312; FIXW_RHILE FIXW PROTEIN ----- pir: JQ0313; E=3e-11 pir:C70314; thiol-disulfide interchange protein tlpA [imported] -; E=5e-06 ddbj:BAB05296.1; (AP001512) cytochrome c biogenesis (thioredoxin); E=6e-05 COG: aq_152; COG0526 Thiol-disulfide isomerase and thioredoxins; E=5e-07 PFAM: PF00085; Thioredoxin; E=1.9e-05 NP_866843.1 PMID: 11248100 best DB hits: BLAST: gb:AAK03963.1; (AE006225) unknown [Pasteurella multocida]; E=2e-13 pir:A82416; conserved hypothetical protein VCA0789 [imported] -; E=1e-12 swissprot:P39270; YJDF_ECOLI HYPOTHETICAL 23.4 KD PROTEIN IN; E=1e-07 PFAM: PF02177; Amyloid A4 extracellular domain; E=0.63 NP_866844.1 PMID: 3286606 best DB hits: BLAST: gb:AAG20509.1; (AE005123) glycolate oxidase subunit; GlcD; E=2e-48 gb:AAG20148.1; (AE005092) glycerol-3-phosphate dehydrogenase chain; E=5e-40 gb:AAG56674.1; AE005391_11 (AE005391) oxidase; E=2e-38 COG: VNG2422G_1; COG0277 FAD/FMN-containing dehydrogenases; E=2e-49 VNG2422G_2; COG0247 Fe-S oxidoreductases; E=7e-42 ydiJ_1; COG0277 FAD/FMN-containing dehydrogenases; E=5e-39 PFAM: PF01565; FAD binding domain; E=6.7e-40 PF02913; FAD linked oxidases, C-terminal; E=2.6e-14 NP_866845.1 PMID: 8514782 PMID: 10053003 best DB hits: BLAST: pir:G70920; probable MoaD involved in molybdopterin synthesis -; E=2e-05 ddbj:BAB06737.1; (AP001517) molybdopterin converting factor; E=3e-05 gb:AAD14600.1; (AF091872) molybdopterin-synthase small subunit; E=1e-04 COG: Rv3112; COG1977 Molybdopterin converting factor, small subunit; E=3e-06 NP_866846.1 PMID: 8361352 PMID: 8514782 best DB hits: BLAST: gb:AAF67478.1; AF155659_1 (AF155659) molybdenum cofactor; E=6e-15 embl:CAB71291.1; (AJ271728) molybdopterin synthase, large subunit; E=1e-14 pir:D70487; molybdopterin biosynthesis protein E chain [similarity]; E=1e-13 COG: aq_2181; COG0314 Molybdopterin converting factor, large subunit; E=1e-14 PFAM: PF02391; Molydopterin converting factor subun; E=7.2e-26 NP_866848.1 best DB hits: BLAST: ddbj:BAB07337.1; (AP001519) BH3618~unknown conserved protein in; E=5e-11 pir:C72419; conserved hypothetical protein - Thermotoga maritima; E=1e-08 pir:C71297; probable transmembrane protein - syphilis spirochete; E=5e-07 COG: BH3618; COG1699 Uncharacterized BCR; E=5e-12 PFAM: PF02623; Uncharacterized BCR, COG1699; E=5.7e-12 NP_866849.1 PMID: 8158647 PMID: 2193164 best DB hits: BLAST: swissprot:P29744; FLGL_ECOLI FLAGELLAR HOOK-ASSOCIATED PROTEIN 3; E=4e-08 gb:AAG55829.1; AE005318_6 (AE005318) flagellar biosynthesis; E=1e-07 swissprot:P16326; FLGL_SALTY FLAGELLAR HOOK-ASSOCIATED PROTEIN 3; E=3e-07 COG: flgL; COG1344 Flagellin and related hook-associated proteins; E=4e-09 PFAM: PF00669; Bacterial flagellin N-terminus; E=0.028 NP_866851.1 PMID: 8843436 best DB hits: BLAST: embl:CAB69748.1; (AL137166) hypothetical protein SCC121.30c; E=0.009 NP_866852.1 best DB hits: BLAST: pir:T36788; hypothetical protein SCI30A.08 - Streptomyces; E=0.51 PFAM: PF02656; Domain of unknown function DUF; E=0.0074 NP_866853.1 catalyzes the conversion of NADPH to NADH NP_866854.1 PMID: 7987228 best DB hits: BLAST: pir:C75051; hydrolase related PAB1449 - Pyrococcus abyssi (strain; E=5e-28 pir:C71109; hypothetical protein PH0642 - Pyrococcus horikoshii; E=7e-27 pir:B83387; hypothetical protein PA2074 [imported] - Pseudomonas; E=2e-22 COG: PAB1449; COG0388 Predicted amidohydrolase; E=5e-29 PFAM: PF00795; Carbon-nitrogen hydrolase; E=8e-48 NP_866855.1 PMID: 9371463 best DB hits: BLAST: pir:H69043; conserved hypothetical protein MTH1330 -; E=0.19 swissprot:Q50500; YE63_METTH HYPOTHETICAL PROTEIN MTH1463 (ORF11); E=0.30 pir:A55712; hypothetical protein X mtd 5'-region - Methanobacterium; E=0.39 NP_866857.1 PMID: 1624460 best DB hits: BLAST: swissprot:P28619; RNPH_BACSU RIBONUCLEASE PH (RNASE PH) (TRNA; E=2e-60 pir:A44914; tRNA nucleotidyltransferase (EC 2.7.7.56) - Bacillus; E=4e-60 pir:D82350; ribonuclease PH VC0210 [imported] - Vibrio cholerae; E=7e-60 COG: BS_rph; COG0689 RNase PH; E=2e-61 PA4740; COG1185 Polyribonucleotide nucleotidyltransferase; E=0.001 PFAM: PF01138; 3' exoribonuclease; E=4.3e-59 NP_866858.1 best DB hits: BLAST: gb:AAD41367.1; AF151698_4 (AF151698) oxidoreductase; E=9e-09 pir:H69216; 3-chlorobenzoate-3,4-dioxygenase dyhydrogenase related; E=1e-08 pir:T38428; hypothetical oxidoreductase - fission yeast; E=5e-08 COG: MTH875; COG0673 Predicted dehydrogenases and related proteins; E=9e-10 PFAM: PF01408; Oxidoreductase, NAD-bindi; E=9.2e-22 NP_866859.1 PMID: 8905231 best DB hits: BLAST: swissprot:P73846; YH17_SYNY3 HYPOTHETICAL 30.2 KD PROTEIN SLR1717; E=1e-37 gb:AAB89691.1; (AE000995) conserved hypothetical protein; E=3e-28 pir:C72312; conserved hypothetical protein - Thermotoga maritima; E=7e-28 COG: slr1717; COG1606 ATP-utilizing enzymes of the PP-loop superfamily; E=1e-38 PFAM: PF00764; Arginosuccinate synthase; E=0.042 NP_866860.1 PMID: 7768349 best DB hits: BLAST: pir:T36501; probable serinethreonine protein kinase - Streptomyces; E=3e-47 swissprot:P71584; PKNB_MYCTU SERINETHREONINE-PROTEIN; E=4e-46 swissprot:P54744; PKNB_MYCLE SERINETHREONINE-PROTEIN; E=2e-45 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=4e-47 PFAM: PF00069; Protein kinase domain; E=2.8e-44 NP_866863.1 PMID: 8905231 best DB hits: BLAST: pir:S75932; hypothetical protein - Synechocystis sp. (strain PCC; E=1e-35 pir:B83298; conserved hypothetical protein PA2771 [imported] -; E=7e-07 pir:S76731; hypothetical protein - Synechocystis sp. (strain PCC; E=9e-06 COG: sll0048_1; COG2203 GAF domain; E=2e-27 PFAM: PF01590; GAF domain; E=2.5e-09 NP_866864.1 PMID: 1569007 best DB hits: BLAST: swissprot:P10940; UHPA_ECOLI transcriptional regulator; E=0.020 embl:CAB37412.1; (AJ224978) TtrR [Salmonella typhimurium] -----; E=0.075 swissprot:P27667; UHPA_SALTY transcriptional regulator; E=0.12 COG: uhpA; COG2197 Response regulators consisting of a CheY-like receiver; E=0.002 NP_866866.1 PMID: 3897211 best DB hits: BLAST: swissprot:Q58414; ILVE_METJA BRANCHED-CHAIN AMINO ACID; E=3e-07 gb:AAB90305.1; (AE001039) branched-chain amino acid; E=2e-05 pir:F69057; branched-chain amino-acid aminotransferase -; E=6e-05 COG: MJ1008; COG0115 Branched-chain amino acid; E=3e-08 NP_866867.1 PMID: 11259647 best DB hits: PFAM: PF00487; Fatty acid desaturase; E=0.11 NP_866869.1 PMID: 9387221 best DB hits: BLAST: gb:AAC00390.1; (AF008220) YtfP [Bacillus subtilis]; E=2e-57 ddbj:BAB06998.1; (AP001518) BH3279~unknown conserved protein; E=5e-53 gb:AAK04356.1; AE006263_3 (AE006263) HYPOTHETICAL PROTEIN; E=3e-46 COG: BH3279; COG2081 Predicted flavoproteins; E=5e-54 PFAM: PF01134; Glucose inhibited division prot; E=0.38 PF01494; FAD binding domain; E=0.002 PF01946; Thi4 family; E=0.25 NP_866870.1 PMID: 1970565 best DB hits: BLAST: swissprot:P40137; CYAA_STIAU ADENYLATE CYCLASE 1 (ATP; E=9e-11 swissprot:P19485; CYA1_RHIME ADENYLATE CYCLASE 1 (ATP; E=2e-10 pir:C71320; probable adenylate cyclase - syphilis spirochete -----; E=3e-10 COG: TP0485; COG2114 Adenylate cyclase, family 3 (some proteins contain; E=2e-11 PFAM: PF00498; FHA domain; E=0.61 PF00211; Adenylate and Guanylate cyclase; E=1.1e-07 NP_866872.1 PMID: 2668891 best DB hits: BLAST: pir:G82121; arginyl-tRNA synthetase VC2074 [imported] - Vibrio; E=1e-69 swissprot:Q55486; SYR_SYNY3 ARGINYL-TRNA SYNTHETASE; E=5e-68 embl:CAC01600.1; (AJ269505) arginyl-tRNA synthetase; E=4e-66 COG: VC2074; COG0018 Arginyl-tRNA synthetase; E=1e-70 PFAM: PF00750; tRNA synthetases class I (R); E=5.7e-55 NP_866873.1 PMID: 10192928 best DB hits: BLAST: ddbj:BAB05047.1; (AP001511) BH1328~unknown conserved protein; E=1e-12 pir:S77145; ybeB protein homolog iojap - Synechocystis sp. (strain; E=2e-12 pir:E75256; conserved hypothetical protein - Deinococcus radiodurans; E=3e-11 COG: BH1328; COG0799 Uncharacterized ACR (homolog of plant Iojap; E=1e-13 CT769; COG0799 Uncharacterized ACR (homolog of plant Iojap proteins); E=1e-09 TM0147; COG0799 Uncharacterized ACR (homolog of plant Iojap; E=2e-09 PFAM: PF02410; Domain of unknown function DUF143; E=3.3e-30 NP_866874.1 PMID: 9537378 best DB hits: BLAST: ddbj:BAB04667.1; (AP001510) bacterioferritin comigratory protein; E=2e-27 pir:F70870; probable bcp protein - Mycobacterium tuberculosis; E=2e-27 pir:A83520; bacterioferritin comigratory protein PA1008 [imported] -; E=8e-26 COG: BH0948; COG1225 Peroxiredoxins; E=2e-28 PFAM: PF00578; AhpC/TSA family; E=4.7e-35 NP_866875.1 best DB hits: BLAST: pir:F82206; DnaK-related protein VC1374 [imported] - Vibrio cholerae; E=1e-110 pir:E82206; DnaK-related protein VC1373 [imported] - Vibrio cholerae; E=2e-75 pir:C72385; dnaK-type molecular chaperone dnaK - Thermotoga maritima; E=4e-07 COG: VC1374; COG0443 Molecular chaperone; E=1e-111 PFAM: PF00370; FGGY family of carbohydrate kinases,; E=0.8 PF00012; Hsp70 protein; E=5.8e-06 NP_866876.1 PMID: 2345134 best DB hits: BLAST: pir:E82206; DnaK-related protein VC1373 [imported] - Vibrio cholerae; E=1e-142 pir:F82206; DnaK-related protein VC1374 [imported] - Vibrio cholerae; E=3e-88 swissprot:Q51382; HSCA_PSEAE CHAPERONE PROTEIN HSCA HOMOLOG; E=4e-08 COG: VC1373_1; COG0443 Molecular chaperone; E=1e-99 PFAM: PF00012; Hsp70 protein; E=0.0012 NP_866878.1 PMID: 9278503 best DB hits: BLAST: swissprot:Q46931; YGDQ_ECOLI HYPOTHETICAL 26.2 KD PROTEIN IN; E=2e-31 gb:AAF12561.1; AE001826_30 (AE001826) conserved hypothetical; E=5e-31 swissprot:P43932; YGDQ_HAEIN HYPOTHETICAL PROTEIN HI0056 -----; E=7e-30 COG: ygdQ; COG0861 Membrane protein TerC, possibly involved in tellurium; E=2e-32 DRB0131; COG0861 Membrane protein TerC, possibly involved in; E=5e-32 NP_866879.1 best DB hits: PFAM: PF01925; Domain of unknown function DUF81; E=0.54 NP_866880.1 PMID: 8760912 best DB hits: BLAST: swissprot:P42979; YPJD_BACSU HYPOTHETICAL 13.0 KD PROTEIN IN; E=8e-10 pir:H75445; conserved hypothetical protein - Deinococcus radiodurans; E=5e-09 ddbj:BAB05398.1; (AP001512) BH1679~unknown conserved protein; E=1e-08 COG: BS_ypjD; COG1694 Predicted pyrophosphatase; E=9e-11 PFAM: PF01503; Phosphoribosyl-ATP pyrophosphohydrol; E=0.23 NP_866881.1 PMID: 11481431 best DB hits: BLAST: embl:CAC18704.1; (AL451182) hypothetical protein [Streptomyces; E=0.12 NP_866882.1 PMID: 6265208 best DB hits: BLAST: pir:S74826; NADH dehydrogenase (EC 1.6.99.3) - Synechocystis sp.; E=1e-110 embl:CAA71031.1; (Y09899) NADH dehydrogenase [Calothrix; E=1e-106 gb:AAC46302.1; (AF038423) NADH dehydrogenase [Mycobacterium; E=9e-91 COG: slr0851; COG1252 NADH dehydrogenase, FAD-containing subunit; E=1e-111 PFAM: PF01494; FAD binding domain; E=0.015 PF00732; GMC oxidoreductases; E=0.067 PF00070; Pyridine nucleotide-disulphide; E=7.9e-33 NP_866883.1 PMID: 10202137 best DB hits: BLAST: swissprot:P77338; KEFA_ECOLI POTASSIUM EFFLUX SYSTEM KEFA (AEFA; E=3e-55 gb:AAK02442.1; (AE006072) unknown [Pasteurella multocida]; E=1e-52 swissprot:Q57362; YJEP_HAEIN PROTEIN HI0195.1 PRECURSOR -----; E=9e-49 COG: aefA; COG3264 Small-conductance mechanosensitive channel; E=3e-56 slr0510_1; COG0668 Small-conductance mechanosensitive channel; E=1e-18 PFAM: PF00924; Uncharacterized protein family UPF0; E=1.4e-66 NP_866886.1 PMID: 9389475 best DB hits: BLAST: gb:AAB90372.1; (AE001044) conserved hypothetical protein; E=5e-45 pir:E72265; conserved hypothetical protein - Thermotoga maritima; E=3e-44 embl:CAC23290.1; (AL512965) conserved hypothetical protein; E=1e-39 COG: AF0862; COG1690 Uncharacterized ACR; E=5e-46 PFAM: PF01139; Uncharacterized protein family; E=0.00068 NP_866887.1 PMID: 10086842 best DB hits: BLAST: pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=3e-27 ddbj:BAB07562.1; (AP001520) oxidoreductase [Bacillus halodurans]; E=5e-26 ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=3e-23 COG: TM0585; COG0673 Predicted dehydrogenases and related proteins; E=3e-28 PFAM: PF01408; Oxidoreductase, NAD-bin; E=7.5e-40 PF02894; Oxidoreductase, C-termi; E=2.8e-10 NP_866889.1 PMID: 8454193 PMID: 3537962 PMID: 7022451 best DB hits: BLAST: swissprot:P35483; PPBH_PSEAE ALKALINE PHOSPHATASE H PRECURSOR; E=2e-11 pdb:1ANI; A Chain A, Alkaline Phosphatase (D153h, K328h) -----; E=2e-11 pdb:2ANH; A Chain A, Alkaline Phosphatase (D153h) ----- pdb:; E=3e-11 COG: PA3296; COG1785 Alkaline phosphatase; E=2e-12 PFAM: PF00245; Alkaline phosphatase; E=2.2e-09 NP_866891.1 PMID: 7699720 best DB hits: BLAST: pir:D75276; response regulator - Deinococcus radiodurans (strain R1); E=2e-09 embl:CAB62661.1; (AL133422) hypothetical protein SCM1.03c.; E=4e-08 swissprot:Q55169; RCP1_SYNY3 RESPONSE REGULATOR RCP1 -----; E=4e-08 COG: DR2420; COG0784 CheY-like receiver domains; E=2e-10 VC0790; COG2197 Response regulators consisting of a CheY-like; E=0.002 citB; COG2197 Response regulators consisting of a CheY-like receiver; E=0.004 PFAM: PF00072; Response regulator receiver doma; E=2.1e-10 NP_866893.1 PMID: 9388228 best DB hits: BLAST: swissprot:P56430; THIO_HELPY THIOREDOXIN (TRX) ----- pir:; E=1e-06 swissprot:P80579; THIO_ALIAC THIOREDOXIN (TRX) ----- pdb: 1QUW; E=5e-06 pir:G75612; thioredoxin 1 - Deinococcus radiodurans (strain R1); E=1e-05 COG: jhp0763; COG0526 Thiol-disulfide isomerase and thioredoxins; E=1e-07 PA4061; COG3118 Thioredoxin domain-containing protein; E=2e-06 Cj0147c; COG0526 Thiol-disulfide isomerase and thioredoxins; E=6e-06 PFAM: PF00085; Thioredoxin; E=0.00016 NP_866895.1 PMID: 9482716 best DB hits: BLAST: pir:B69196; conserved hypothetical protein MTH72 - Methanobacterium; E=7e-20 pir:F69210; conserved hypothetical protein MTH83 - Methanobacterium; E=3e-15 pir:S74665; outer membrane protein mom72, 72K - Synechocystis sp.; E=2e-13 COG: MTH72; COG0457 TPR-repeat-containing proteins; E=7e-21 PFAM: PF00515; TPR Domain; E=0.12 NP_866896.1 PMID: 9180694 best DB hits: BLAST: pir:T14312; hypothetical protein - carrot transposon Tdc1 -----; E=0.54 NP_866897.1 PMID: 2185975 best DB hits: BLAST: gb:AAF53358.1; (AE003641) CG16885 gene product [Drosophila; E=0.40 NP_866900.1 PMID: 7876255 best DB hits: BLAST: pir:A82153; PTS system, fructose-specific IIABC component VC1822; E=7e-05 ddbj:BAB03332.1; (AB035450) fructose specific permease; E=2e-04 pir:E82153; PTS system, fructose-specific IIABC component VC1826; E=0.001 COG: VC1822_1; COG1762 Phosphotransferase system; E=6e-06 CT290; COG1762 Phosphotransferase system mannitol/fructose-specific; E=1e-04 BH0828_1; COG1762 Phosphotransferase system; E=4e-04 PFAM: PF00359; Phosphoenolpyruvate-dependent sug; E=0.011 NP_866902.1 PMID: 6382163 best DB hits: BLAST: gb:AAK05984.1; AE006418_4 (AE006418) 30S ribosomal protein S15; E=2e-14 ddbj:BAB06127.1; (AP001515) 30S ribosomal protein S15 [Bacillus; E=9e-14 swissprot:P21473; RS15_BACSU 30S RIBOSOMAL PROTEIN S15 (BS18); E=1e-13 COG: BH2408; COG0184 Ribosomal protein S15P/S13E; E=1e-14 PFAM: PF00312; Ribosomal protein S15; E=3.1e-39 NP_866904.1 PMID: 6382163 best DB hits: BLAST: pir:C81161; polyribonucleotide nucleotidyltransferase NMB0758; E=1e-154 pir:C83052; polyribonucleotide nucleotidyltransferase PA4740; E=1e-154 pir:H81943; probable polyribonucleotide nucleotidyltransferase (EC; E=1e-154 COG: NMB0758; COG1185 Polyribonucleotide nucleotidyltransferase; E=1e-155 PFAM: PF01138; 3' exoribonuclease; E=4e-43 PF00013; KH domain; E=5.3e-07 PF00575; S1 RNA binding domain; E=1.7e-15 NP_866905.1 best DB hits: PFAM: PF01436; NHL repeat; E=0.0032 PF00034; Cytochrome c; E=1.1e-06 NP_866906.1 PMID: 11058132 best DB hits: BLAST: ddbj:BAB04428.1; (AP001509) BH0709~unknown conserved protein in; E=9e-05 pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=0.53 NP_866907.1 PMID: 8760916 PMID: 25878 best DB hits: BLAST: swissprot:P42251; PPBD_BACSU ALKALINE PHOSPHATASE D PRECURSOR; E=6e-09 pir:F83157; hypothetical protein PA3910 [imported] - Pseudomonas; E=5e-08 pir:T35097; probable secreted alkaline phosphatase - Streptomyces; E=2e-06 NP_866909.1 PMID: 2803312 PMID: 2894306 best DB hits: BLAST: pir:B82515; alpha-L-fucosidase XF2714 [imported] - Xylella; E=4e-71 embl:CAC24067.1; (AL512981) Hypothetical [Sulfolobus; E=3e-67 pir:S10235; alpha-L-fucosidase (EC 3.2.1.51) precursor - rat; E=8e-51 PFAM: PF01120; Alpha-L-fucosidase; E=4.4e-27 NP_866910.1 PMID: 7765723 PMID: 2553671 best DB hits: BLAST: embl:CAB55711.1; (AL117387) possible oxidoreductase [Streptomyces; E=3e-18 embl:CAC01651.1; (AL391072) oxidoreductase [Streptomyces; E=2e-16 pir:JC2405; D-threo-aldose 1-dehydrogenase (EC 1.1.1.122) -; E=2e-11 COG: BS_iolS; COG0667 Predicted oxidoreductases (related to aryl-alcohol; E=0.005 NP_866911.1 PMID: 2553671 PMID: 7783647 best DB hits: BLAST: gb:AAF01487.1; AF137263_6 (AF137263) L-fucose permease; E=1e-106 swissprot:P44776; FUCP_HAEIN L-FUCOSE PERMEASE ----- pir:; E=7e-83 swissprot:P11551; FUCP_ECOLI L-FUCOSE PERMEASE ----- pir:; E=1e-49 COG: HI0610; COG0738 Fucose permease; E=6e-84 NP_866913.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc) NP_866914.1 PMID: 7684040 best DB hits: BLAST: pir:F83498; hypothetical protein PA1166 [imported] - Pseudomonas; E=1e-38 pir:B83447; hypothetical protein PA1597 [imported] - Pseudomonas; E=5e-36 pir:T34190; hypothetical protein D1022.4 - Caenorhabditis elegans; E=4e-33 COG: PA1166; COG0412 Dienelactone hydrolase and related enzymes; E=1e-39 VNG0409C; COG1506 Dipeptidyl; E=0.003 PFAM: PF01738; Dienelactone hydrolase; E=2.8e-44 NP_866915.1 PMID: 8905231 best DB hits: BLAST: pir:S75996; hypothetical protein - Synechocystis sp. (strain PCC; E=2e-05 pir:S77272; hypothetical protein slr0882 - Synechocystis sp. (strain; E=0.023 pir:F72217; conserved hypothetical protein - Thermotoga maritima; E=0.13 COG: sll0496; COG0795 Predicted permeases; E=2e-06 NP_866917.1 PMID: 1663113 PMID: 9370333 best DB hits: BLAST: pir:B82971; cardiolipin synthase PA5394 [imported] - Pseudomonas; E=3e-42 swissprot:P71040; CLS2_BACSU PROBABLE CARDIOLIPIN SYNTHETASE 2; E=4e-42 swissprot:P31048; CLS_PSEPU PROBABLE CARDIOLIPIN SYNTHETASE; E=5e-42 COG: PA5394; COG1502; E=2e-43 cls; COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiol; E=9e-32 BS_ywjE; COG1502; E=2e-31 PFAM: PF00614; Phospholipase D. Active site motif; E=1.2e-05 NP_866921.1 PMID: 1639057 best DB hits: BLAST: gb:AAD09011.1; (AF089862) type-I signal peptidase SipB; E=1e-11 swissprot:P72365; LEP_STAAU SIGNAL PEPTIDASE IB (SPASE IB) (LEADER; E=2e-09 pir:A69708; signal peptidase I sipV - Bacillus subtilis -----; E=2e-08 COG: BS_sipV; COG0681 Signal peptidase I; E=2e-09 PFAM: PF00461; Signal peptidase I; E=1.8e-11 NP_866923.1 best DB hits: BLAST: pir:T35944; probable beta-galactosidase - Streptomyces coelicolor; E=2e-04 pir:D83558; transport protein ExbB2 PA0693 [imported] - Pseudomonas; E=0.002 gb:AAA59483.1; (L34155) epiligrin alpha 3 subunit [Homo sapiens]; E=0.009 COG: sll0222; COG1409 Predicted phosphohydrolases; E=0.002 NP_866924.1 best DB hits: BLAST: pir:S74796; hypothetical protein sll1020 - Synechocystis sp. (strain; E=4e-11 pir:D69148; dolichyl-phosphate mannose synthase related protein 2 -; E=2e-10 gb:AAB90908.1; (AE001082) dolichol-P-glucose synthetase, ; E=9e-08 COG: sll1020; COG0463 Glycosyltransferases involved in cell wall; E=4e-12 yfbF; COG0463 Glycosyltransferases involved in cell wall biogenesis; E=1e-08 MTH331; COG0463 Glycosyltransferases involved in cell wall; E=2e-08 PFAM: PF00535; Glycosyl transferase; E=2.6e-18 NP_866925.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis NP_866926.1 PMID: 2180916 best DB hits: BLAST: pir:D71366; probable dnaK suppressor - syphilis spirochete -----; E=1e-09 pir:T34677; hypothetical protein SC1A9.28c SC1A9.28c - Streptomyces; E=9e-07 pir:E81429; dksA-like protein Cj0125c [imported] - Campylobacter; E=5e-06 COG: TP0096; COG1734 DnaK suppressor protein; E=1e-10 PFAM: PF01258; Prokaryotic dksA/traR C4-type zi; E=5e-10 NP_866929.1 PMID: 9208928 best DB hits: BLAST: ddbj:BAA22069.1; (D89992) myosin heavy chain [Cyprinus carpio]; E=0.001 gb:AAD52842.1; AF134172_1 (AF134172) myosin heavy chain [Pecten; E=0.001 gb:AAB03661.1; (U59295) myosin heavy chain [Placopecten; E=0.001 PFAM: PF00498; FHA domain; E=3.4e-05 NP_866930.1 PMID: 4578954 best DB hits: BLAST: pir:G72376; alcohol dehydrogenase, zinc-containing - Thermotoga; E=7e-23 gb:AAF17283.1; (AF204805) NosE [Nostoc sp. GSV224]; E=9e-19 ddbj:BAB10455.1; (AB005234) alcohol dehydrogenase-like protein; E=1e-18 COG: TM0436; COG1063 Threonine dehydrogenase and related Zn-dependent; E=7e-24 NMB0546; COG1064 Zn-dependent alcohol dehydrogenases; E=3e-15 PA2188; COG1063 Threonine dehydrogenase and related Zn-dependent; E=3e-15 PFAM: PF00899; ThiF family; E=0.34 PF02032; Phytoene dehydrogenase related; E=0.1 PF01494; FAD binding domain; E=0.0065 NP_866931.1 best DB hits: BLAST: pir:F69187; epoxidase - Methanobacterium thermoautotrophicum (strain; E=3e-08 pir:A83618; probable transcriptional regulator PA0225 [imported] -; E=5e-06 pir:E69193; conserved hypothetical protein MTH700 - Methanobacterium; E=1e-05 COG: MTH659; COG1396 Predicted transcriptional regulators; E=3e-09 PFAM: PF01381; Helix-turn-helix; E=1.7e-10 NP_866932.1 best DB hits: BLAST: gb:AAG26463.1; AF285774_3 (AF285774) unknown [Bacteroides; E=5e-64 gb:AAD40705.1; AF048749_1 (AF048749) unknown [Bacteroides; E=3e-36 NP_866933.1 best DB hits: BLAST: embl:CAB63337.1; (AL032631) contains similarity to Pfam domain:; E=1e-06 gb:AAF57796.1; (AE003802) CG6385 gene product [Drosophila; E=2e-04 ddbj:BAB05760.1; (AP001514) BH2041~unknown conserved protein; E=0.004 COG: BH2041; COG0665 Glycine/D-amino acid oxidases (deaminating); E=3e-04 PFAM: PF00070; Pyridine nucleotide-disulphid; E=0.0033 PF02032; Phytoene dehydrogenase relate; E=0.00044 NP_866934.1 best DB hits: BLAST: pdb:1FEZ; A Chain A, The Crystal Structure Of Bacillus Cereus; E=2e-07 gb:AAC14004.1; (U33059) phosphatase [Actinosynnema pretiosum; E=8e-07 embl:CAA94730.1; (Z70724) ORF2 [Streptomyces lividans]; E=3e-06 COG: VCA0606; COG1011 Predicted hydrolases of the HAD superfamily; E=5e-06 BH3587; COG0546 Predicted phosphatases; E=2e-04 PFAM: PF00702; haloacid dehalogenase-like hydrolas; E=2.8e-18 NP_866935.1 PMID: 1662761 best DB hits: BLAST: gb:AAG60893.1; AF322013_12 (AF322013) ID460 [Bradyrhizobium; E=8e-34 gb:AAD45539.1; U70376_1 (U70376) InsA [Streptomyces netropsis]; E=4e-33 ddbj:BAA19966.1; (D63923) transposase [Acetobacter pasteurianus]; E=2e-27 NP_866937.1 best DB hits: BLAST: embl:CAA86239.1; (Z38113) orf, len: 215, CAI: 0.14, similar to; E=2e-04 ddbj:BAB01069.1; (AB023041) peroxiredoxin Q-like protein; E=0.011 embl:CAB09905.1; (Z97179) Bcp [Mycobacterium leprae]; E=0.032 COG: YIL010w; COG1225 Peroxiredoxins; E=2e-05 PFAM: PF00578; AhpC/TSA family; E=0.037 NP_866938.1 best DB hits: BLAST: swissprot:P72991; FTH4_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 4; E=5e-20 gb:AAG19776.1; (AE005063) cell division cycle protein; Cdc48b; E=9e-20 gb:AAF69154.1; AC007915_6 (AC007915) F27F5.8 [Arabidopsis; E=2e-19 COG: slr1604; COG0465 ATP-dependent Zn proteases; E=4e-21 VNG1472G; COG0464 ATPases of the AAA+ class; E=8e-21 PH0201; COG1222 ATP-dependent 26S proteasome regulatory subunit; E=3e-20 PFAM: PF01695; IstB-like ATP binding protein; E=0.25 PF00910; RNA helicase; E=0.35 PF00004; ATPase associated with va; E=8.6e-30 NP_866940.1 PMID: 11792842 best DB hits: PFAM: PF01137; RNA 3'-terminal phosphate cyclase; E=0.31 NP_866943.1 PMID: 7768349 best DB hits: BLAST: swissprot:P54737; PKN5_MYXXA SERINETHREONINE-PROTEIN KINASE PKN5; E=3e-09 gb:AAF87930.1; AF163841_9 (AF163841) serinethreonine; E=4e-09 swissprot:P54738; PKN6_MYXXA SERINETHREONINE-PROTEIN KINASE PKN6; E=1e-07 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=1e-07 PFAM: PF00069; Protein kinase domain; E=3.8e-08 PF01130; CD36 family; E=0.61 NP_866946.1 best DB hits: BLAST: embl:CAB55661.1; (AL117385) hypothetical protein [Streptomyces; E=0.38 PFAM: PF00903; Glyoxalase/Bleomycin resistance; E=0.00027 NP_866947.1 best DB hits: BLAST: embl:CAB75424.1; (AJ271623) ORF101~shows homology to one ORF; E=3e-04 embl:CAB53171.1; (AL109969) transcriptional regulator; E=9e-04 PFAM: PF01381; Helix-turn-helix; E=2.5e-05 NP_866949.1 PMID: 9278503 best DB hits: BLAST: swissprot:P76068; YNAK_ECOLI HYPOTHETICAL 9.8 KD PROTEIN IN; E=5e-05 pir:T31008; hypothetical protein 422 - Sulfolobus sp. plasmid pNOB8; E=1e-04 pir:T31049; hypothetical protein 470 - Sulfolobus sp. plasmid pNOB8; E=0.001 COG: ynaK; COG1475 Predicted transcriptional regulators; E=5e-06 PFAM: PF02195; ParB-like nuclease domain; E=1.1e-10 NP_866951.1 PMID: 10384242 best DB hits: BLAST: gb:AAA88919.1; (U13013) ORFB [Leptospira interrogans]; E=1e-46 gb:AAA88916.1; (U13012) ORFB [Leptospira interrogans]; E=5e-46 gb:AAC05649.1; (AF038931) probable transposase-related protein; E=6e-45 COG: DRB0019.2; COG2801 transposase; E=1e-35 PFAM: PF00665; Integrase core domain; E=4.8e-40 NP_866952.1 PMID: 2824781 best DB hits: BLAST: gb:AAG58100.1; AE005527_3 (AE005527) unknown protein encoded by; E=0.002 gb:AAG53987.1; AF327445_1 (AF327445) transposase A; E=0.003 gb:AAF28119.1; AF153317_15 (AF153317) InsA [Shigella; E=0.007 COG: PA1937; COG2963 Transposase; E=0.004 PFAM: PF01381; Helix-turn-helix; E=0.53 PF01527; Transposase; E=6.1e-18 NP_866954.1 PMID: 11832943 best DB hits: BLAST: pir:F81221; hypothetical protein NMB0240 [imported] - Neisseria; E=0.018 pir:H81992; probable integral membrane protein NMA0020 [imported] -; E=0.018 embl:CAB95777.1; (AL359949) hypothetical protein [Streptomyces; E=0.20 NP_866956.1 best DB hits: BLAST: pir:D69100; probable protein disulfide-isomerase (EC 5.3.4.1); E=7e-07 gb:AAG20098.1; (AE005089) Vng1905c [Halobacterium sp. NRC-1]; E=9e-05 gb:AAB89512.1; (AE000983) conserved hypothetical protein; E=1e-04 COG: MTH1745; COG0526 Thiol-disulfide isomerase and thioredoxins; E=6e-08 VNG1905C; COG1331 Highly conserved protein containing a thioredoxin; E=9e-06 VCA0647; COG3350 Uncharacterized ACR; E=0.009 NP_866958.1 best DB hits: PFAM: PF00092; von Willebrand factor type A; E=0.0045 NP_866960.1 PMID: 9130712 best DB hits: BLAST: pir:A72340; serinethreonine protein phosphatase - Thermotoga; E=4e-22 gb:AAB68789.1; (U97022) orf; similar to serinethreonine protein; E=7e-22 pir:S75676; probable phosphoesterase (EC 3.1.-.-) sll1387 -; E=4e-20 COG: TM0742; COG0639 Diadenosine tetraphosphatase and related; E=3e-23 NP_866962.1 best DB hits: BLAST: swissprot:P31589; GSPJ_ERWCA GENERAL SECRETION PATHWAY PROTEIN J; E=0.64 NP_866967.1 PMID: 3899863 PMID: 1409631 best DB hits: BLAST: gb:AAK05878.1; AE006408_2 (AE006408) bifunctional protein BirA (EC; E=1e-17 pir:A83112; BirA bifunctional protein PA4280 [imported] -; E=1e-16 swissprot:P29906; BIRA_PARDE BIOTIN--[ACETYL-COA-CARBOXYLASE]; E=6e-15 COG: PA4280_2; COG0340 Biotin-(acetyl-CoA carboxylase) ligase; E=1e-17 PFAM: PF01317; Biotin protein ligase catalytic doma; E=6.2e-30 PF02237; Biotin protein ligase C terminal dom; E=5.4e-05 NP_866968.1 PMID: 10322433 best DB hits: BLAST: swissprot:Q00808; HET1_PODAN VEGETATIBLE INCOMPATIBILITY PROTEIN; E=3e-25 swissprot:P49695; PKWA_THECU SERINETHREONINE-PROTEIN; E=5e-21 swissprot:Q9UGP9; WDR5_HUMAN WD-REPEAT PROTEIN 5 ----- embl:; E=8e-20 COG: slr0143_2; COG2319 WD40 repeat protein; E=1e-16 PFAM: PF00400; WD domain, G-beta repeat; E=0.0064 NP_866969.1 best DB hits: BLAST: gb:AAB53736.1; (U95056) surface protein Lk90 [Leptospira; E=0.38 PFAM: PF02368; Bacterial Ig-like domain (grou; E=6.3e-05 NP_866970.1 best DB hits: BLAST: pir:A75582; serine proteinase, subtilase - Deinococcus; E=0.003 COG: DRA0283; COG1404 Subtilisin-like serine proteases; E=3e-04 PFAM: PF00630; Filamin/ABP280 repeat.; E=0.16 NP_866971.1 PMID: 11823852 NP_866974.1 PMID: 8182085 PMID: 2198286 best DB hits: BLAST: pir:E71101; probable geranylgeranyl pyrophosphate synthetase -; E=9e-17 gb:AAD47627.1; (AF153713) octylprenyl diphosphate synthase-like; E=1e-16 swissprot:Q53479; IDSA_METTM BIFUNCTIONAL SHORT CHAIN ISOPRENYL; E=2e-15 COG: PH1072; COG0142 Geranylgeranyl pyrophosphate synthase; E=9e-18 AF0204; COG1852 Uncharacterized ArCR; E=3e-13 NMB0261; COG0142 Geranylgeranyl pyrophosphate synthase; E=4e-13 PFAM: PF01976; Protein of unknown function D; E=6e-24 PF00348; Polyprenyl synthetase; E=3.4e-09 NP_866975.1 PMID: 7894707 best DB hits: BLAST: pir:T35404; probable squalene-hopene cyclase - Streptomyces; E=6e-15 embl:CAA71101.1; (Y09979) squalene-hopene cyclase; E=1e-14 swissprot:P55348; SQHC_RHISN PROBABLE SQUALENE--HOPENE CYCLASE; E=2e-11 COG: slr2089; COG1657 Squalene cyclase; E=4e-09 PFAM: PF00432; Prenyltransferase and squalene ox; E=1.5e-06 NP_866979.1 PMID: 8438237 PMID: 11566992 best DB hits: BLAST: gb:AAB36933.1; (U77780) secretory protein kinase [Chlorobium; E=1e-118 gb:AAF40195.1; AF229646_7 (AF229646) CpaF [Caulobacter crescentus]; E=1e-108 gb:AAD38172.2; AF152598_1 (AF152598) TadA [Actinobacillus; E=1e-101 COG: PA4302; COG0630 Predicted ATPases involved in pili and flagella; E=2e-92 PFAM: PF00004; ATPase associated with; E=0.6 PF01580; FtsK/SpoIIIE family; E=0.017 PF01443; Viral (Superfamily 1) RNA hel; E=0.48 NP_866980.1 PMID: 10880436 best DB hits: BLAST: gb:AAF40196.1; AF229646_8 (AF229646) TadB [Caulobacter crescentus]; E=2e-19 pir:D83108; hypothetical protein PA4301 [imported] - Pseudomonas; E=5e-12 embl:CAB92603.1; (AL356813) integral membrane protein; E=2e-09 COG: PA4301; COG2064 Predicted membrane protein; E=5e-13 NP_866981.1 PMID: 10880436 best DB hits: BLAST: embl:CAB92604.1; (AL356813) integral membrane protein; E=6e-09 gb:AAK02931.1; (AE006123) TadC [Pasteurella multocida]; E=2e-08 pir:C83108; hypothetical protein PA4300 [imported] - Pseudomonas; E=3e-08 COG: PH0653; COG2064 Predicted membrane protein; E=3e-05 NP_866982.1 PMID: 7699720 PMID: 1454550 best DB hits: BLAST: embl:CAA47908.1; (X67676) phoP [Bacillus subtilis]; E=1e-15 gb:AAA22661.1; (M16775) phoP protein (put.); [Bacillus; E=1e-15 swissprot:P13792; PHOP_BACSU ALKALINE PHOSPHATASE SYNTHESIS; E=1e-15 COG: BS_phoP; COG0745 Response regulators consisting of a CheY-like; E=1e-16 sll0043_4; COG0784 CheY-like receiver domains; E=4e-15 Rv0757; COG0745 Response regulators consisting of a CheY-like; E=4e-15 PFAM: PF00072; Response regulator receiver doma; E=4.8e-28 NP_866983.1 best DB hits: BLAST: ddbj:BAA75358.1; (AB013363) YvaM [Bacillus halodurans] -----; E=0.63 PFAM: PF02230; Phospholipase/Carboxylesterase; E=0.0014 NP_866984.1 PMID: 3622514 best DB hits: BLAST: prf:2104227E; 2,3-butanediol dehydrogenase [Pseudomonas putida]; E=3e-40 pir:C83128; 2,3-butanediol dehydrogenase PA4153 [imported] -; E=4e-40 ddbj:BAB03906.1; (AP001507) sorbitol dehydrogenase [Bacillus; E=1e-38 COG: PA4153; COG1063 Threonine dehydrogenase and related Zn-dependent; E=4e-41 Rv3086; COG1062 Zn-dependent alcohol dehydrogenases, class III; E=7e-26 PFAM: PF00107; Zinc-binding dehydrogenases; E=4.4e-92 NP_866985.1 best DB hits: BLAST: pir:T50226; hypothetical protein SPAC607.06c [imported] - fission; E=1e-19 embl:CAA86272.1; (Z38125) orf, len: 696, CAI: 0.15 [Saccharomyces; E=3e-13 pir:T42995; hypothetical protein - fission yeast; E=4e-10 NP_866989.1 best DB hits: BLAST: pir:B75318; ferripyochelin-binding protein - Deinococcus radiodurans; E=1e-38 gb:AAB88579.1; (M82832) unknown [Pseudomonas aeruginosa]; E=2e-34 swissprot:P40882; Y1F3_PSEAE HYPOTHETICAL PROTEIN PA3753 -----; E=2e-34 COG: DR2089; COG0663 Carbonic anhydrases/acetyltransferases, isoleucine; E=1e-39 PFAM: PF00132; Bacterial transferase hexapeptide (f; E=0.67 NP_866991.1 best DB hits: BLAST: pir:H70302; conserved hypothetical protein aq_035 - Aquifex aeolicus; E=1e-28 pir:A71678; probable response regulatory protein RP237 - Rickettsia; E=3e-26 pir:E72220; conserved hypothetical protein - Thermotoga maritima; E=1e-24 COG: aq_035_2; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=1e-29 TM1699_2; COG2206 HD-GYP domain; E=1e-24 aq_563_2; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=2e-24 PFAM: PF01966; HD domain; E=6.6e-08 PF00989; PAS domain; E=0.032 PF00990; GGDEF domain; E=3.6e-53 NP_866994.1 best DB hits: BLAST: pir:B72234; RNA polymerase sigma-E factor - Thermotoga maritima; E=0.42 gb:AAC14121.1; (AF056199) sigma factor E [Streptomyces; E=0.80 PFAM: PF00140; Sigma-70 factor; E=4.9e-05 PF00196; Bacterial regulatory proteins,; E=0.19 NP_866995.1 PMID: 3027506 best DB hits: BLAST: pir:E83226; ATP-dependent DNA helicase RecQ PA3344 [imported] -; E=1e-127 pir:T34609; probable helicase - Streptomyces coelicolor -----; E=1e-126 pir:G75413; DNA helicase RecQ - Deinococcus radiodurans (strain R1); E=1e-125 COG: PA3344; COG0514 Superfamily II DNA helicase; E=1e-128 slr0083; COG0513 Superfamily II DNA and RNA helicases; E=1e-12 PFAM: PF00271; Helicase conserved C-terminal dom; E=0.15 PF00270; DEAD/DEAH box helicase; E=2.2e-29 PF00271; Helicase conserved C-terminal dom; E=1.9e-25 NP_866996.1 PMID: 7921236 best DB hits: BLAST: pir:H83402; membrane protein component of ABC ribose transporter; E=2e-51 gb:AAK02238.1; (AE006050) RbsC [Pasteurella multocida]; E=2e-24 swissprot:P44736; RBSC_HAEIN RIBOSE TRANSPORT SYSTEM PERMEASE; E=3e-24 COG: PA1948; COG1172 Ribose/xylose/arabinose/galactoside ABC-type; E=1e-52 rbsC; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport; E=2e-20 TM0112; COG1172 Ribose/xylose/arabinose/galactoside ABC-type; E=5e-17 PFAM: PF02653; Branched-chain amino acid transp; E=0.58 NP_866997.1 PMID: 3086314 best DB hits: BLAST: pir:G83402; ribose transport protein RbsA PA1947 [imported] -; E=1e-103 gb:AAK05735.1; AE006394_5 (AE006394) ribose ABC transporter ATP; E=3e-85 pir:E72314; ribose ABC transporter ATP-binding protein - Thermotoga; E=4e-83 COG: PA1947; COG1129 ABC-type sugar (aldose) transport system, ATPase; E=1e-104 PFAM: PF00005; ABC transporter; E=4.5e-45 NP_866998.1 PMID: 6313683 best DB hits: BLAST: pir:F83402; binding protein component precursor of ABC ribose; E=4e-88 gb:AAK03409.1; (AE006170) unknown [Pasteurella multocida]; E=3e-42 pir:C82497; ribose ABC transporter, periplasmic D-ribose-binding; E=6e-29 COG: PA1946; COG1879 Periplasmic sugar-binding proteins; E=4e-89 BH3727; COG1609 Transcriptional regulators; E=4e-09 HI1111; COG1879 Periplasmic sugar-binding proteins; E=5e-08 PFAM: PF00532; Periplasmic binding proteins; E=1.3e-11 NP_867001.1 PMID: 20365717 best DB hits: BLAST: pir:H82642; hypothetical protein XF1738 [imported] - Xylella; E=3e-46 ddbj:BAB09974.1; (AB010692) gene_id:K18I23.11~unknown protein; E=3e-16 COG: XF1738; COG3202 ATP/ADP translocase; E=3e-47 PFAM: PF01681; C6 domain; E=0.37 NP_867002.1 PMID: 10393305 best DB hits: BLAST: swissprot:P73326; ARGB_SYNY3 ACETYLGLUTAMATE KINASE (NAG KINASE); E=3e-58 swissprot:O67848; ARGB_AQUAE ACETYLGLUTAMATE KINASE (NAG KINASE); E=6e-58 swissprot:Q60382; ARGB_METJA PROBABLE ACETYLGLUTAMATE KINASE (NAG; E=2e-56 COG: slr1898; COG0548 Acetylglutamate kinase; E=3e-59 PFAM: PF00696; Amino acid kinase; E=2.1e-40 NP_867003.1 PMID: 9002618 best DB hits: BLAST: swissprot:Q58131; ARGD_METJA ACETYLORNITHINE AMINOTRANSFERASE; E=2e-08 swissprot:O66442; ARGD_AQUAE ACETYLORNITHINE AMINOTRANSFERASE; E=5e-05 swissprot:O04866; ARGD_ALNGL ACETYLORNITHINE AMINOTRANSFERASE,; E=8e-04 COG: MJ0721; COG0160 PLP-dependent aminotransferases; E=2e-09 NP_867004.1 PMID: 3072022 PMID: 9275160 best DB hits: BLAST: ddbj:BAB06613.1; (AP001517) ornithine carbamoyltransferase; E=7e-72 swissprot:O93656; OTC_PYRAB ORNITHINE CARBAMOYLTRANSFERASE; E=2e-68 gb:AAD09004.1; (AF083209) ornithine carbamoyltransferase; E=4e-68 COG: BH2894; COG0078 Ornithine carbamoyltransferase; E=7e-73 PFAM: PF02703; Early E1A protein; E=0.31 PF02729; Aspartate/ornithine carbamoyltransf; E=7.3e-43 PF00185; Aspartate/ornithine carbamoyltransf; E=2.7e-48 NP_867008.1 best DB hits: BLAST: pir:G69146; capsular polysaccharide biosynthesis protein -; E=6e-16 swissprot:O05083; YG98_HAEIN GLYCOSYL TRANSFERASE HI1698; E=9e-16 embl:CAA72352.1; (Y11648) wlaC [Campylobacter jejuni]; E=5e-15 COG: MTH362; COG0438 Predicted glycosyltransferases; E=5e-17 PFAM: PF00534; Glycosyl transferases group 1; E=1.8e-36 NP_867010.1 PMID: 3419283 PMID: 2304552 PMID: 1404390 best DB hits: BLAST: pir:F82202; hypothetical protein VC1418 [imported] - Vibrio cholerae; E=5e-11 gb:AAF32408.1; (AF229435) lipase precursor [Rhizopus arrhizus]; E=6e-10 swissprot:P19515; LIP_RHIMI LIPASE PRECURSOR (TRIACYLGLYCEROL; E=7e-10 PFAM: PF01764; Lipase (class 3); E=1.3e-23 NP_867011.1 best DB hits: BLAST: pir:T35917; probable regulatory protein - Streptomyces coelicolor; E=4e-08 swissprot:Q51664; NORQ_PARDE NORQ PROTEIN ----- gb: AAA68972.1; E=3e-07 swissprot:Q51481; NIRQ_PSEAE DENITRIFICATION REGULATORY PROTEIN; E=2e-06 COG: PA0520; COG0714 MoxR-like ATPases; E=1e-07 NP_867013.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity NP_867014.1 PMID: 8402918 PMID: 9311978 PMID: 9082984 best DB hits: BLAST: ddbj:BAB06184.1; (AP001515) integraserecombinase [Bacillus; E=3e-55 ddbj:BAB05248.1; (AP001512) integraserecombinase [Bacillus; E=9e-53 gb:AAC64162.1; (AF093548) tyrosine recombinase XerD; E=2e-49 COG: BH2465; COG0582 Integrase; E=2e-56 PFAM: PF02899; Phage integrase, N-terminal S; E=8.6e-26 PF00589; Phage integrase; E=3.9e-44 NP_867022.1 PMID: 1662761 best DB hits: BLAST: gb:AAD45539.1; U70376_1 (U70376) InsA [Streptomyces netropsis]; E=5e-33 gb:AAG60893.1; AF322013_12 (AF322013) ID460 [Bradyrhizobium; E=8e-33 ddbj:BAA19966.1; (D63923) transposase [Acetobacter pasteurianus]; E=1e-26 NP_867028.1 best DB hits: BLAST: gb:AAB64177.1; (AF012345) beta-amylase [Hordeum vulgare]; E=0.71 NP_867029.1 best DB hits: PFAM: PF00404; Dockerin type I repeat; E=0.21 PF00160; Cyclophilin type peptidyl-proly; E=0.12 NP_867032.1 PMID: 7768349 best DB hits: BLAST: pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=2e-41 ddbj:BAB06223.1; (AP001515) serinethreonine protein kinase; E=9e-39 swissprot:P54744; PKNB_MYCLE SERINETHREONINE-PROTEIN; E=8e-36 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=2e-42 PFAM: PF00069; Protein kinase domain; E=3.3e-46 PF00515; TPR Domain; E=0.1 NP_867033.1 PMID: 7751307 best DB hits: BLAST: swissprot:P44790; RPOE_HAEIN RNA POLYMERASE SIGMA-E FACTOR; E=1e-11 gb:AAK03873.1; (AE006215) RpoE [Pasteurella multocida]; E=3e-11 pir:C82583; RNA polymerase sigma-H factor XF2239 [imported] -; E=4e-10 COG: HI0628; COG1595 DNA-directed RNA polymerase specialized sigma; E=1e-12 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=0.0021 NP_867036.1 best DB hits: BLAST: pir:G82309; probable hemolysin VC0558 [imported] - Vibrio cholerae; E=4e-10 gb:AAG20419.1; (AE005114) hemolysin protein; Hlp [Halobacterium; E=6e-09 ddbj:BAA16497.1; (D90888) similar to [SwissProt Accession Number; E=9e-09 COG: VC0558; COG1253 Uncharacterized CBS domain-containing proteins; E=4e-11 PFAM: PF01595; Domain of unknown function DUF21; E=1.8e-17 NP_867037.1 best DB hits: BLAST: pir:G82309; probable hemolysin VC0558 [imported] - Vibrio cholerae; E=6e-19 gb:AAG20419.1; (AE005114) hemolysin protein; Hlp [Halobacterium; E=1e-16 ddbj:BAA16497.1; (D90888) similar to [SwissProt Accession Number; E=4e-16 COG: VC0558; COG1253 Uncharacterized CBS domain-containing proteins; E=6e-20 PFAM: PF01595; Domain of unknown function DUF2; E=0.00013 PF00571; CBS domain; E=0.0037 NP_867039.1 PMID: 2828368 PMID: 1316900 best DB hits: BLAST: gb:AAG42463.1; AF308468_4 (AF308468) APS kinase [Klebsiella; E=2e-48 swissprot:P23846; CYSC_ECOLI ADENYLYLSULFATE KINASE (APS KINASE); E=7e-47 pir:JN0328; adenylylsulfate kinase (EC 2.7.1.25) precursor -; E=3e-46 COG: cysC; COG0529 Adenylylsulfate kinase and related kinases; E=6e-48 PFAM: PF01121; Uncharacterized protein famil; E=0.34 PF00005; ABC transporter; E=0.021 PF00910; RNA helicase; E=0.052 NP_867041.1 PMID: 12024217 best DB hits: PFAM: PF00884; Sulfatase; E=0.34 NP_867043.1 PMID: 8997703 best DB hits: BLAST: pir:H70121; methanol dehydrogenase regulator (moxR) homolog - Lyme; E=3e-71 embl:CAA65298.1; (X96434) moxR [Borrelia burgdorferi] -----; E=9e-69 ddbj:BAB04450.1; (AP001509) BH0731~unknown conserved protein; E=3e-67 COG: BB0176; COG0714 MoxR-like ATPases; E=3e-72 PFAM: PF00004; ATPase associated with va; E=0.0005 PF01078; Magnesium chelatase, subunit Chl; E=1e-12 NP_867044.1 best DB hits: PFAM: PF00432; Prenyltransferase and squalene ox; E=0.69 NP_867045.1 PMID: 8083177 best DB hits: BLAST: gb:AAD56627.1; AF165218_2 (AF165218) Pgm [Streptococcus; E=2e-83 ddbj:BAB04825.1; (AP001510) phosphomannomutase [Bacillus; E=5e-79 swissprot:P18159; YHXB_BACSU PROBABLE PHOSPHOMANNOMUTASE (PMM); E=1e-77 COG: BH1106; COG1109 Phosphomannomutase; E=5e-80 VC2095; COG0033 Phosphoglucomutase; E=3e-11 PH0923; COG1109 Phosphomannomutase; E=5e-11 PFAM: PF02878; Phosphoglucomutase/phosphomannomu; E=1.6e-13 PF02880; Phosphoglucomutase/phosphomannomu; E=0.023 PF00408; Phosphoglucomutase/phosphomannomu; E=0.76 NP_867047.1 PMID: 8314774 best DB hits: BLAST: pir:S77053; magnesiumcobalt transport protein sll0671 -; E=7e-61 pir:S75981; magnesiumcobalt transport protein sll0507 -; E=2e-52 pir:H72360; divalent cation transport-related protein - Thermotoga; E=3e-51 COG: sll0671; COG0598 Mg2+ and Co2+ transporters; E=7e-62 PFAM: PF01544; CorA-like Mg2+ transporter protein; E=1.9e-79 NP_867048.1 PMID: 9573042 best DB hits: BLAST: ddbj:BAB06206.1; (AP001515) chromosome segregation SMC protein; E=1e-119 swissprot:P51834; SMC_BACSU CHROMOSOME PARTITION PROTEIN SMC -----; E=1e-106 pir:JC4819; minichromosome stabilizing protein SMC - Bacillus subtilis; E=1e-104 COG: BH2487; COG1196 Chromosome segregation ATPases; E=1e-120 PFAM: PF00005; ABC transporter; E=0.038 PF02463; SMC domain N terminal domain; E=5.4e-79 PF02371; Transposase IS116/IS110/IS902; E=0.65 NP_867050.1 PMID: 9358175 best DB hits: BLAST: pir:S74697; hypothetical protein sll1193 - Synechocystis sp. (strain; E=3e-23 pir:T36856; hypothetical protein SCI5.03 - Streptomyces coelicolor; E=4e-17 pir:H82621; hypothetical protein XF1912 [imported] - Xylella; E=5e-17 COG: sll1193; COG1403 Restriction endonuclease; E=3e-24 PFAM: PF01844; HNH endonuclease; E=9.6e-11 NP_867053.1 PMID: 8843436 best DB hits: BLAST: ddbj:BAB06714.1; (AP001517) BH2995~unknown conserved protein; E=2e-95 embl:CAB71916.1; (AL138668) secreted protein.; E=2e-90 embl:CAB71258.1; (AL138598) secreted protein.; E=1e-79 PFAM: PF02871; NAD/NADP octopine/nopaline dehy; E=0.52 PF00070; Pyridine nucleotide-disulphide; E=0.0043 PF02254; KTN NAD-binding domain; E=0.011 NP_867054.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription NP_867057.1 PMID: 11474104 best DB hits: BLAST: gb:AAD28577.1; AF121341_1 (AF121341) response regulator; E=0.038 pir:F82618; chemotaxis-related protein kinase XF1952 [imported] -; E=0.10 pir:S76044; hypothetical protein slr0322 - Synechocystis sp. (strain; E=0.10 PFAM: PF00072; Response regulator receiver doma; E=3.5e-05 NP_867058.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) NP_867059.1 PMID: 11214968 best DB hits: BLAST: pir:C82445; hypothetical protein VCA0550 [imported] - Vibrio; E=0.16 NP_867060.1 PMID: 10484179 best DB hits: BLAST: ddbj:BAB04212.1; (AP001508) BH0493~unknown [Bacillus halodurans]; E=4e-12 gb:AAF77061.1; AF266466_3 (AF266466) hexuronic acid; E=0.003 gb:AAK05726.1; AE006393_5 (AE006393) glucuronate isomerase (EC; E=0.57 NP_867063.1 best DB hits: PFAM: PF02368; Bacterial Ig-like domain (group; E=0.091 NP_867064.1 PMID: 11823852 NP_867068.1 PMID: 10710307 best DB hits: BLAST: pir:B81207; hypothetical protein NMB0372 [imported] - Neisseria; E=0.016 pir:A81174; hypothetical protein NMB0655 [imported] - Neisseria; E=0.022 pir:B81783; hypothetical protein NMA2115 [imported] - Neisseria; E=0.070 NP_867069.1 best DB hits: PFAM: PF00515; TPR Domain; E=0.036 NP_867071.1 PMID: 8436954 best DB hits: BLAST: swissprot:Q03523; MURE_BACSU; E=2e-10 ddbj:BAB06290.1; (AP001515); E=4e-09 swissprot:O86491; MURE_STAAU; E=7e-09 COG: BS_murE; COG0769 UDP-N-acetylmuramyl tripeptide synthase; E=2e-11 XF0794; COG0770 UDP-N-acetylmuramyl pentapeptide synthase; E=1e-09 CPn0418; COG0769 UDP-N-acetylmuramyl tripeptide synthase; E=2e-06 PFAM: PF01225; Mur ligase, catalytic domai; E=0.0033 PF00023; Ank repeat; E=0.019 NP_867073.1 PMID: 8955385 best DB hits: BLAST: embl:CAB60199.1; (AJ250881) P1a6 protein [Haemonchus contortus]; E=5e-29 gb:AAB01192.1; (U55864) apical gut membrane polyprotein; E=8e-29 pir:T19607; hypothetical protein C31C9.1 - Caenorhabditis elegans; E=8e-27 COG: XF0820; COG2234 Predicted aminopeptidases; E=2e-11 RP302; COG0823 Periplasmic component of the Tol biopolymer transport; E=1e-07 PA0972; COG0823 Periplasmic component of the Tol biopolymer; E=2e-06 PFAM: PF02787; Carbamoyl-phosphate synthetase; E=0.2 PF01546; Peptidase M20/M25/M40; E=0.61 PF00595; PDZ domain (Also known as DHR o; E=0.017 NP_867075.1 PMID: 8760355 best DB hits: BLAST: pir:T34092; hypothetical protein C07A12.4 - Caenorhabditis elegans; E=0.071 pir:S71862; protein disulfide-isomerase (EC 5.3.4.1) precursor -; E=0.071 swissprot:P09103; PDI_MOUSE PROTEIN DISULFIDE ISOMERASE PRECURSOR; E=0.079 NP_867076.1 PMID: 9068650 best DB hits: BLAST: pir:T50546; riboflavin bifunctional biosynthesis protein ribG; E=2e-56 swissprot:P50853; RIBD_ACTPL RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD; E=2e-56 ddbj:BAB05273.1; (AP001512) riboflavin specific; E=9e-52 COG: ribD_1; COG0117 Pyrimidine deaminase; E=1e-28 BH1554_2; COG1985 Pyrimidine reductase, riboflavin biosynthesis; E=6e-21 CPn0871_1; COG0117 Pyrimidine deaminase; E=1e-20 PFAM: PF00383; Cytidine and deoxycytidylate de; E=1.5e-31 PF01872; RibD C-terminal domain; E=4e-33 NP_867077.1 best DB hits: PFAM: PF01842; ACT domain; E=0.55 PF00515; TPR Domain; E=0.051 NP_867080.1 PMID: 3036807 best DB hits: BLAST: swissprot:P12045; PURK_BACSU PHOSPHORIBOSYLAMINOIMIDAZOLE; E=2e-59 embl:CAB45017.1; (AJ242839) phosphoribosylaminoimidazole; E=2e-58 ddbj:BAB04343.1; (AP001509) phosphoribosylaminoimidazole; E=2e-58 COG: BS_purK; COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR; E=2e-60 MJ1486; COG0027 Formate-dependent phosphoribosylglycinamide; E=1e-31 purK; COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR; E=2e-29 PFAM: PF02786; Carbamoyl-phosphate synthase; E=0.027 PF02222; ATP-grasp domain; E=3.7e-22 PF01820; D-ala D-ala ligase; E=0.65 NP_867081.1 PMID: 3036807 best DB hits: BLAST: swissprot:P12044; PUR6_BACSU PHOSPHORIBOSYLAMINOIMIDAZOLE; E=7e-47 ddbj:BAB04342.1; (AP001509) phosphoribosylaminoimidazole; E=9e-45 swissprot:O06456; PUR6_SULSO PHOSPHORIBOSYLAMINOIMIDAZOLE; E=9e-43 COG: BS_purE; COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; E=7e-48 YOR128c_2; COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR); E=7e-39 VC0052; COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; E=1e-38 PFAM: PF00731; AIR carboxylase; E=1.7e-82 NP_867083.1 PMID: 10484179 best DB hits: BLAST: ddbj:BAB05607.1; (AP001513) BH1888~unknown conserved protein; E=4e-06 swissprot:P54564; YQKA_BACSU HYPOTHETICAL 39.0 KD PROTEIN IN; E=9e-06 pir:C83045; hypothetical protein PA4798 [imported] - Pseudomonas; E=2e-04 COG: BH1888; COG2320 Uncharacterized BCR; E=4e-07 NP_867085.1 PMID: 10984043 best DB hits: BLAST: pir:B83093; probable oxidoreductase PA4434 [imported] - Pseudomonas; E=4e-54 pir:C82294; oxidoreductase Tas, aldoketo reductase VC0667; E=2e-53 gb:AAG57946.1; AE005512_5 (AE005512) orf, hypothetical protein; E=3e-51 COG: PA4434; COG0667 Predicted oxidoreductases (related to aryl-alcohol; E=4e-55 PFAM: PF00248; Aldo/keto reductase; E=2.5e-29 NP_867087.1 PMID: 10984043 best DB hits: BLAST: pir:B83340; hypothetical protein PA2451 [imported] - Pseudomonas; E=9e-10 pir:A75265; ferric enterobactin esterase-related protein -; E=4e-05 swissprot:P10478; XYNZ_CLOTM ENDO-1,4-BETA-XYLANASE Z PRECURSOR; E=0.004 COG: PA2451; COG2382 Enterochelin esterase and related enzymes; E=9e-11 NP_867088.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis NP_867089.1 best DB hits: BLAST: gb:AAB51777.1; (U69571) ORF993; upstream of trxA gene; E=0.81 NP_867091.1 PMID: 10978523 NP_867099.1 PMID: 9163424 best DB hits: BLAST: swissprot:P55632; Y4QK_RHISN INTEGRASERECOMBINASE Y4QK; E=7e-25 swissprot:P55429; Y4EF_RHISN INTEGRASERECOMBINASE Y4EF; E=5e-24 prf:2115270D; integrase [Weeksella zoohelcum]; E=4e-18 COG: PAB0255; COG0582 Integrase; E=1e-15 PFAM: PF00589; Phage integrase; E=2.6e-19 NP_867100.1 PMID: 9163424 best DB hits: BLAST: swissprot:P55631; Y4QJ_RHISN TRANSPOSASE Y4QJ -----; E=7e-39 prf:2115270C; transposase [Weeksella zoohelcum]; E=6e-35 pir:S23782; transposase tnpA (insertion sequence IS91) - Escherichia; E=5e-14 NP_867102.1 PMID: 10984043 best DB hits: BLAST: pir:F83333; hypothetical protein PA2504 [imported] - Pseudomonas; E=8e-11 pir:C81172; hypothetical protein NMB0685 [imported] - Neisseria; E=1e-10 pir:B81935; hypothetical protein NMA0887 [imported] - Neisseria; E=3e-10 NP_867103.1 PMID: 9163424 best DB hits: BLAST: swissprot:P55632; Y4QK_RHISN INTEGRASERECOMBINASE Y4QK; E=3e-35 prf:2115270D; integrase [Weeksella zoohelcum]; E=1e-34 swissprot:P55429; Y4EF_RHISN INTEGRASERECOMBINASE Y4EF; E=1e-33 COG: MTH893; COG0582 Integrase; E=9e-29 PFAM: PF00589; Phage integrase; E=4.2e-40 NP_867108.1 PMID: 12093901 best DB hits: BLAST: gb:AAG19264.1; (AE005022) Vng0801c [Halobacterium sp. NRC-1]; E=0.001 embl:CAC22924.1; (AL512963) hypothetical [Sulfolobus; E=0.005 gb:AAB89210.1; (AE000961) conserved hypothetical protein; E=0.006 COG: APE2154a; COG1826 Sec-independent protein secretion pathway; E=4e-05 PFAM: PF02416; mttA/Hcf106 family; E=6.2e-10 NP_867109.1 best DB hits: BLAST: gb:AAD31522.1; AF145755_1 (AF145755) THA4 [Zea mays]; E=0.46 PFAM: PF02416; mttA/Hcf106 family; E=1.6e-06 NP_867110.1 PMID: 10567266 best DB hits: BLAST: pir:F75417; L-sorbosone dehydrogenase - Deinococcus radiodurans; E=0.19 pir:C75617; probable oxidoreductase - Deinococcus radiodurans; E=0.35 embl:CAA53052.1; (X75304) giantin [Homo sapiens]; E=0.78 PFAM: PF00034; Cytochrome c; E=0.017 PF02736; Myosin N-terminal SH3-like domai; E=0.62 NP_867113.1 best DB hits: BLAST: embl:CAC24059.1; (AL512981) Hypothetical [Sulfolobus; E=0.17 NP_867116.1 PMID: 9736747 best DB hits: BLAST: gb:AAC13371.1; (U39940) choline sulfatase [Sinorhizobium; E=4e-30 swissprot:O69787; BETC_RHIME CHOLINE-SULFATASE; E=4e-30 gb:AAA16877.1; (L13329) iduronate-2-sulfatase [Homo sapiens]; E=2e-28 COG: PA0031; COG3119 Arylsulfatase A and related enzymes; E=4e-23 PA0924; COG3083 Predicted hydrolase of alkaline phosphatase; E=0.003 PFAM: PF00884; Sulfatase; E=7.4e-20 NP_867117.1 PMID: 8821935 best DB hits: BLAST: pir:S70672; dehydrogenase homolog - Bordetella pertussis -----; E=5e-50 gb:AAD45293.1; AF156256_1 (AF156256) dehydrogenase; E=3e-44 embl:CAC24056.1; (AL512981) Hypothetical-conserved [Sulfolobus; E=3e-43 COG: TM0585; COG0673 Predicted dehydrogenases and related proteins; E=2e-40 PFAM: PF01958; Domain of unknown function DUF; E=0.00025 PF01408; Oxidoreductase, NAD-bin; E=2.1e-40 PF02894; Oxidoreductase, C-termi; E=1.4e-16 NP_867118.1 PMID: 7584024 best DB hits: BLAST: swissprot:P37474; MFD_BACSU TRANSCRIPTION-REPAIR COUPLING FACTOR; E=0.0 gb:AAC98900.1; (AF023181) transcription-repair coupling factor; E=0.0 gb:AAD03810.1; (AF054624) transcription-repair coupling factor; E=1e-179 COG: BS_mfd; COG1197 Transcription-repair coupling factor - superfamily II; E=0.0 TM0205; COG1200 RecG-like helicases; E=4e-69 PFAM: PF00270; DEAD/DEAH box helicase; E=2.7e-27 PF00271; Helicase conserved C-terminal; E=5.3e-18 NP_867119.1 PMID: 9389475 best DB hits: BLAST: gb:AAB89850.1; (AE001008) conserved hypothetical protein; E=2e-05 swissprot:P54741; AFSK_STRCO SERINETHREONINE PROTEIN KINASE AFSK; E=0.064 embl:CAB88430.1; (AL353815) serinethreonine protein kinase; E=0.064 COG: AF1399; COG1520 Uncharacterized proteins of WD40-like repeat family; E=2e-06 PFAM: PF01011; PQQ enzyme repeat; E=0.47 PF02316; Mu DNA-binding domain; E=0.84 NP_867120.1 PMID: 8688087 best DB hits: BLAST: swissprot:Q58250; Y840_METJA HYPOTHETICAL PROTEIN MJ0840 -----; E=3e-29 pir:C69211; conserved hypothetical protein MTH834 - Methanobacterium; E=1e-24 gb:AAB90759.1; (AE001071) conserved hypothetical protein; E=8e-24 COG: MJ0840; COG1548 Predicted nucleotide-binding enzyme; E=2e-30 PFAM: PF00370; FGGY family of carbohydrate kinases,; E=0.78 PF01897; Protein of unknown function DUF66; E=8.5e-35 NP_867121.1 best DB hits: PFAM: PF00696; Amino acid kinase; E=0.24 NP_867122.1 PMID: 11474104 best DB hits: BLAST: embl:CAB53476.1; (AJ245900) CAA30373.1 protein [Oryza sativa]; E=0.023 pir:B70126; surface-located membrane protein 1 (lmp1) homolog - Lyme; E=0.091 gb:AAD05531.1; (AF083240) c-type cytochrome precursor [Shewanella; E=0.093 COG: BB0210; COG0457 TPR-repeat-containing proteins; E=0.008 PFAM: PF00515; TPR Domain; E=0.00026 NP_867123.1 PMID: 9537320 best DB hits: BLAST: swissprot:O66776; GLYA_AQUAE SERINE HYDROXYMETHYLTRANSFERASE; E=1e-135 swissprot:P39148; GLYA_BACSU SERINE HYDROXYMETHYLTRANSFERASE; E=1e-132 ddbj:BAB07484.1; (AP001519) serine hydroxymethyltransferase; E=1e-131 COG: aq_479; COG0112 Glycine hydroxymethyltransferase; E=1e-136 PFAM: PF00464; Serine hydroxymethyltransferase; E=7.9e-234 NP_867124.1 PMID: 10376842 best DB hits: BLAST: gb:AAD28578.1; AF121341_2 (AF121341) response regulator; E=7e-27 gb:AAA87378.1; (L42554) pleD gene product [Caulobacter; E=3e-21 pir:S74913; sensory transduction system regulatory protein slr1400 -; E=4e-21 COG: slr1400_1; COG0784 CheY-like receiver domains; E=4e-20 slr0115; COG0745 Response regulators consisting of a CheY-like; E=2e-19 VC0622_4; COG0784 CheY-like receiver domains; E=4e-19 PFAM: PF00072; Response regulator receiver doma; E=3.1e-37 NP_867127.1 PMID: 11759840 NP_867129.1 PMID: 10984043 best DB hits: BLAST: pir:D83026; conserved hypothetical protein PA4950 [imported] -; E=4e-52 swissprot:P39288; YJES_ECOLI HYPOTHETICAL 43.1 KD PROTEIN IN; E=1e-48 gb:AAG59362.1; AE005650_1 (AE005650) orf, hypothetical protein; E=2e-48 COG: PA4950; COG1600 Uncharacterized Fe-S protein; E=4e-53 PFAM: PF00037; 4Fe-4S binding domain; E=0.026 NP_867130.1 best DB hits: BLAST: pir:T37039; hypothetical protein SCJ12.22 - Streptomyces coelicolor; E=6e-05 swissprot:P39066; ACUB_BACSU ACETOIN UTILIZATION ACUB PROTEIN; E=0.016 pir:T36952; conserved hypothetical protein SCJ1.19c - Streptomyces; E=0.021 COG: BS_acuB; COG0517 CBS domains; E=0.002 PFAM: PF00999; Sodium/hydrogen exchanger fami; E=0.024 PF00571; CBS domain; E=0.00084 NP_867131.1 best DB hits: BLAST: ddbj:BAA89783.1; (AB037133) IRE [Arabidopsis thaliana] -----; E=0.25 NP_867133.1 PMID: 8590279 best DB hits: BLAST: swissprot:P22040; Y415_SYNY3 HYPOTHETICAL ABC TRANSPORTER; E=8e-56 gb:AAC36155.1; (AF003632) PilH [Myxococcus xanthus]; E=1e-48 pir:A39025; probable membrane protein, cpn60 5'-region -; E=7e-47 COG: sll0415; COG1131 ABC-type multidrug transport system, ATPase; E=7e-57 PFAM: PF00005; ABC transporter; E=1.4e-59 NP_867134.1 PMID: 10360571 best DB hits: BLAST: pir:D72411; folylpolyglutamate synthasedihydrofolate synthase -; E=4e-40 ddbj:BAB06756.1; (AP001517) folyl-polyglutamate synthetase; E=8e-39 swissprot:Q05865; FOLC_BACSU FOLYLPOLYGLUTAMATE SYNTHASE; E=8e-38 COG: TM0166; COG0285 Folylpolyglutamate synthase; E=4e-41 PFAM: PF01225; Mur ligase, catalytic dom; E=1.6e-13 PF02875; Mur ligase, glutamate lig; E=0.00031 NP_867135.1 PMID: 10952301 best DB hits: BLAST: pir:F82343; conserved hypothetical protein VC0271 [imported] -; E=3e-57 swissprot:P74078; YC54_SYNY3 HYPOTHETICAL 38.3 KD PROTEIN SLL1254; E=9e-39 gb:AAG20419.1; (AE005114) hemolysin protein; Hlp [Halobacterium; E=8e-17 COG: VC0271; COG1253 Uncharacterized CBS domain-containing proteins; E=3e-58 PFAM: PF01595; Domain of unknown function DUF21; E=2.1e-20 PF00571; CBS domain; E=0.0002 NP_867137.1 PMID: 10484179 best DB hits: BLAST: ddbj:BAB06210.1; (AP001515) 3-oxoacyl-(acyl-carrier protein); E=1e-17 pir:H75014; 3-oxoacyl-[acyl-carrier-protein] reductase PAB1085 -; E=3e-16 gb:AAK04872.1; AE006311_3 (AE006311) 3-oxoacyl-acyl carrier; E=9e-14 COG: BH2491; COG1028 Dehydrogenases with different specificities (related; E=1e-18 PAB1085; COG1028 Dehydrogenases with different specificities; E=3e-17 DR1943; COG1028 Dehydrogenases with different specificities (related; E=2e-13 PFAM: PF00106; short chain dehydrogenase; E=4.2e-11 PF00678; Short chain dehydrogenase/reduct; E=1.3e-06 NP_867138.1 PMID: 10484179 best DB hits: BLAST: ddbj:BAB06407.1; (AP001516); E=4e-06 pir:G70961; probable hexosyltransferase (EC 2.4.1.-) Rv0225; E=2e-04 gb:AAF14309.1; (U45308) SqdX [Synechococcus sp. PCC 7942]; E=4e-04 COG: BH2688; COG0438 Predicted glycosyltransferases; E=3e-07 PFAM: PF00534; Glycosyl transferases group 1; E=4.6e-08 NP_867143.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine NP_867144.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate NP_867147.1 PMID: 10567266 best DB hits: BLAST: pir:B75596; mannose-1-phosphate guanylyltransferase - Deinococcus; E=5e-67 pir:S75700; GDP-mannose pyrophosphorylase - Synechocystis sp.; E=9e-59 ddbj:BAB03201.1; (AB046360) GOP-mannose phosphorylase; E=2e-52 COG: DRA0032; COG0836 Mannose-1-phosphate guanylyltransferase; E=5e-68 PFAM: PF01128; Uncharacterized protein famil; E=0.27 PF00483; Nucleotidyl transferase; E=1.8e-54 PF01050; Mannose-6-phosphate isomerase; E=3.3e-05 NP_867148.1 best DB hits: BLAST: gb:AAD05534.1; (AF083240) deca-heme c-type cytochrome [Shewanella; E=4e-04 gb:AAD05531.1; (AF083240) c-type cytochrome precursor [Shewanella; E=4e-04 swissprot:P32707; NRFB_ECOLI CYTOCHROME C-TYPE PROTEIN NRFB; E=0.029 COG: MTH83; COG0457 TPR-repeat-containing proteins; E=0.007 PFAM: PF00515; TPR Domain; E=0.014 NP_867150.1 PMID: 10984043 best DB hits: BLAST: pir:G83274; probable tolQ-type transport protein PA2983 [imported] -; E=1e-15 pir:D82726; conserved hypothetical protein XF1079 [imported] -; E=4e-10 gb:AAC69453.1; (AF047974) TolR [Vibrio cholerae]; E=1e-09 COG: PA2983; COG0811 Biopolymer transport proteins; E=1e-16 PFAM: PF01618; MotA/TolQ/ExbB proton channel famil; E=1.9e-20 NP_867153.1 PMID: 11058132 best DB hits: BLAST: swissprot:Q9KDV3; GALE_BACHD UDP-GLUCOSE 4-EPIMERASE; E=9e-99 pir:A69184; UDP-glucose 4-epimerase - Methanobacterium; E=3e-98 gb:AAK06077.1; AE006428_1 (AE006428) UDP-glucose 4-epimerase (EC; E=2e-93 COG: BH1108; COG1087 UDP-glucose 4-epimerase; E=1e-100 TM0509; COG0451 Nucleoside-diphosphate-sugar epimerases; E=9e-41 MPN257; COG1087 UDP-glucose 4-epimerase; E=6e-38 PFAM: PF02716; Isoflavone reductase; E=0.13 PF02254; KTN NAD-binding domain; E=0.22 PF00984; UDP-glucose/GDP-mannose dehyd; E=0.0085 NP_867154.1 PMID: 10484179 best DB hits: BLAST: ddbj:BAB05248.1; (AP001512) integraserecombinase [Bacillus; E=1e-56 swissprot:P46352; RIPX_BACSU PROBABLE INTEGRASERECOMBINASE RIPX; E=1e-54 pir:A82080; integraserecombinase XerD VC2419 [imported] - Vibrio; E=5e-53 COG: BH1529; COG0582 Integrase; E=1e-57 PFAM: PF02899; Phage integrase, N-terminal S; E=1.8e-20 PF00589; Phage integrase; E=1.6e-50 NP_867155.2 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs NP_867157.1 PMID: 10910347 best DB hits: BLAST: pir:D82620; histone-like protein XF1943 [imported] - Xylella; E=4e-14 pir:JC6029; histone H1 homolog - Bordetella pertussis ----- gb:; E=4e-13 ddbj:BAB05028.1; (AP001511) non-specific DNA-binding protein II; E=3e-05 COG: BH1309; COG0776 Bacterial nucleoid DNA-binding protein; E=3e-06 PFAM: PF00216; Bacterial DNA-binding protein; E=7.4e-07 NP_867158.1 PMID: 7584044 best DB hits: BLAST: ddbj:BAA07555.1; (D38552) The ha1539 protein is related to; E=1e-19 gb:AAF58019.1; (AE003807) CG7747 gene product [Drosophila; E=2e-18 pir:T48940; hypothetical protein F14L2.150 - Arabidopsis thaliana; E=4e-18 COG: VNG1914G; COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) -; E=3e-15 PFAM: PF00160; Cyclophilin type peptidyl-prol; E=6.4e-32 NP_867162.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine NP_867165.1 best DB hits: BLAST: pir:T45716; hypothetical protein F1P2.110 - Arabidopsis thaliana; E=4e-07 gb:AAG10612.1; AC008030_12 (AC008030) Unknown protein [Arabidopsis; E=1e-05 gb:AAD10154.1; (AC005917) esterase [Arabidopsis; E=1e-05 COG: XF1829; COG2945 Predicted hydrolase of the alpha/beta superfamily; E=6e-06 CT149; COG1073 Hydrolases of the alpha/beta superfamily; E=0.008 PFAM: PF00561; alpha/beta hydrolase fold; E=0.0058 PF00293; MutT-like domain; E=0.7 NP_867166.1 PMID: 10484179 best DB hits: BLAST: swissprot:P54466; YQFA_BACSU HYPOTHETICAL 35.6 KD PROTEIN IN; E=7e-57 embl:CAA12151.1; (AJ224829) ORF1 [Bacillus megaterium]; E=2e-54 ddbj:BAB05076.1; (AP001511) BH1357~unknown conserved protein in; E=3e-54 NP_867167.1 PMID: 8688087 best DB hits: BLAST: swissprot:Q58114; Y703_METJA HYPOTHETICAL PROTEIN MJ0703 -----; E=9e-14 gb:AAG32955.1; (AF032114) unknown [Methylobacterium extorquens]; E=6e-07 pir:A69189; phosphoribosylformimino-5-aminoimidazole carboxamide; E=4e-05 COG: MJ0703; COG1411 Archaeal family of HisA paralogs; E=9e-15 NP_867170.1 best DB hits: BLAST: swissprot:P20576; TRPG_PSEAE ANTHRANILATE SYNTHASE COMPONENT II; E=1e-60 pir:A35114; trpG protein - Pseudomonas aeruginosa ----- gb:; E=1e-60 pir:NNPS2P; anthranilate synthase (EC 4.1.3.27) component II; E=2e-59 COG: PA0649; COG0512 Anthranilate/para-aminobenzoate synthases component; E=1e-61 pabA; COG0512 Anthranilate/para-aminobenzoate synthases component II; E=3e-56 BS_pabA; COG0512 Anthranilate/para-aminobenzoate synthases component; E=2e-55 PFAM: PF00117; Glutamine amidotransferase class-I; E=2.5e-68 NP_867171.1 PMID: 10360571 best DB hits: BLAST: pir:H72286; conserved hypothetical protein - Thermotoga maritima; E=5e-22 swissprot:P54570; ADPP_BACSU ADP-RIBOSE PYROPHOSPHATASE; E=3e-21 ddbj:BAB05243.1; (AP001512) BH1524~unknown conserved protein; E=3e-19 COG: TM1181; COG0494 NTP pyrophosphohydrolases including oxidative damage; E=5e-23 BS_yqkG; COG0494 NTP pyrophosphohydrolases including oxidative; E=3e-22 BH1524; COG0494 NTP pyrophosphohydrolases including oxidative damage; E=3e-20 PFAM: PF00293; MutT-like domain; E=3.7e-13 NP_867173.1 PMID: 9537320 best DB hits: BLAST: pir:G70463; dolichol-phosphate mannosyltransferase - Aquifex; E=3e-52 pir:D83201; probable glycosyl transferase PA3553 [imported] -; E=3e-37 gb:AAG57385.1; AE005458_2 (AE005458) sugar transferase; E=2e-36 COG: aq_1899; COG0463 Glycosyltransferases involved in cell wall; E=3e-53 yfbF; COG0463 Glycosyltransferases involved in cell wall biogenesis; E=3e-37 sll0501; COG0463 Glycosyltransferases involved in cell wall; E=1e-23 PFAM: PF00535; Glycosyl transferase; E=1.1e-24 NP_867177.1 PMID: 8264528 best DB hits: BLAST: gb:AAK00179.1; AF222754_7 (AF222754) probable nodulation protein; E=5e-08 pir:S39902; nwsB protein - Bradyrhizobium japonicum ----- embl:; E=5e-07 prf:2009374B; NwsB protein [Bradyrhizobium japonicum]; E=5e-07 COG: PA4196; COG2197 Response regulators consisting of a CheY-like; E=1e-05 PFAM: PF01726; LexA DNA binding domain; E=0.74 PF00196; Bacterial regulatory proteins,; E=1.4e-12 NP_867184.1 PMID: 10617197 best DB hits: BLAST: ddbj:BAA98195.1; (AP002030) short chain alcohol; E=7e-21 gb:AAC95219.1; (AC004561) tropinone reductase; E=5e-20 gb:AAC95202.1; (AC004561) tropinone reductase; E=1e-19 COG: TM1724; COG1028 Dehydrogenases with different specificities (related; E=4e-19 VNG1341G; COG1028 Dehydrogenases with different specificities; E=2e-16 TM0441; COG1028 Dehydrogenases with different specificities (related; E=1e-15 PFAM: PF00899; ThiF family; E=0.21 PF02254; KTN NAD-binding domain; E=0.066 PF00106; short chain dehydrogenase; E=3.9e-28 NP_867185.1 PMID: 9371463 best DB hits: BLAST: pir:F69084; conserved hypothetical protein MTH1629 -; E=1e-20 pir:C71193; hypothetical protein PH1819 - Pyrococcus horikoshii; E=8e-18 swissprot:Q57692; Y240_METJA HYPOTHETICAL PROTEIN MJ0240 -----; E=1e-17 COG: MTH1629; COG1437 Adenylate cyclase, class 2 (thermophilic); E=1e-21 PFAM: PF01928; Adenylate cyclase; E=2.9e-45 NP_867186.1 PMID: 8843436 best DB hits: BLAST: embl:CAC08313.1; (AL392149) integral membrane protein; E=8e-05 NP_867187.1 catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate NP_867188.1 PMID: 9628582 best DB hits: BLAST: ddbj:BAB10862.1; (AB009053) contains similarity to isoamyl; E=0.074 NP_867192.1 PMID: 10567266 best DB hits: BLAST: pir:H75377; conserved hypothetical protein - Deinococcus radiodurans; E=1e-11 pir:S76965; hypothetical protein - Synechocystis sp. (strain PCC; E=2e-08 NP_867193.1 PMID: 8590279 best DB hits: BLAST: pir:S75891; hypothetical protein slr1174 - Synechocystis sp. (strain; E=9e-06 pir:E75548; conserved hypothetical protein - Deinococcus radiodurans; E=0.011 COG: slr1174; COG0842 Permease component of an ABC-transporter; E=8e-07 NP_867196.1 PMID: 10484179 best DB hits: BLAST: ddbj:BAB05094.1; (AP001511) DNA primase [Bacillus halodurans]; E=1e-55 swissprot:P05096; PRIM_BACSU DNA PRIMASE ----- pir: A22282 DNA; E=3e-54 swissprot:P74893; PRIM_SYNP7 DNA PRIMASE ----- pir: T11850 DNA; E=5e-54 COG: BH1375; COG0358 DNA primase (bacterial type); E=1e-56 PFAM: PF01807; CHC2 zinc finger; E=5.1e-26 PF01751; Toprim domain; E=3.1e-11 NP_867197.1 PMID: 8188604 best DB hits: BLAST: pir:I40872; transcription initiation factor sigma 70 - Chlamydophila; E=1e-78 swissprot:Q9Z7F0; RPSD_CHLPN RNA POLYMERASE SIGMA FACTOR RPOD; E=9e-77 pir:E81502; RNA polymerase sigma factor, sigma-70 family CP1116; E=2e-76 COG: CPn0756; COG0568 DNA-directed RNA polymerase sigma subunits; E=8e-78 PFAM: PF00140; Sigma-70 factor; E=3.5e-109 NP_867199.1 CcoN/CcoO FixN/FixO NP_867201.1 PMID: 10952301 best DB hits: BLAST: pir:C82200; cytochrome c oxidase, chain CcoP VC1439 [similarity] -; E=7e-15 gb:AAB02559.1; (U58092) cbb3-type cytochrome c oxidase CcoP; E=1e-13 pir:A83452; probable cytochrome c PA1552 [imported] - Pseudomonas; E=1e-13 COG: VC1439; COG2010 Cytochrome c, mono- and diheme variants; E=7e-16 PFAM: PF00034; Cytochrome c; E=4.2e-11 NP_867202.1 PMID: 10984043 best DB hits: BLAST: pir:D83130; probable iron-sulfur protein PA4131 [imported] -; E=7e-48 pir:G82371; FixG-related protein VC0036 [imported] - Vibrio cholerae; E=1e-45 pir:G81081; ferredoxin, 4Fe-4S bacterial type NMB1454 [imported] -; E=2e-45 COG: PA4131; COG0348 Polyferredoxin; E=6e-49 PFAM: PF00037; 4Fe-4S binding domain; E=0.27 NP_867203.1 PMID: 8661920 best DB hits: BLAST: embl:CAA64888.1; (X95634) fixH [Bradyrhizobium japonicum] -----; E=0.18 NP_867204.1 PMID: 10710307 best DB hits: BLAST: pir:D81161; conserved hypothetical protein NMB0759 [imported] -; E=2e-10 pir:A81944; hypothetical protein NMA0970 [imported] - Neisseria; E=9e-10 pir:G82199; conserved hypothetical protein VC1435 [imported] -; E=8e-06 COG: NMB0759; COG2836 Uncharacterized BCR; E=2e-11 NP_867205.1 PMID: 10984043 best DB hits: BLAST: pir:F83451; probable cation-transporting P-type ATPase PA1549; E=2e-85 pir:A82200; cation transport ATPase, E1-E2 family VC1437 [imported]; E=3e-77 pir:D81129; cation transport ATPase, E1-E2 family NMB1042 [imported]; E=6e-74 COG: PA1549; COG2217 Cation transport ATPases; E=2e-86 PFAM: PF00403; Heavy-metal-associated domain; E=5.3e-08 PF00122; E1-E2 ATPase; E=4.1e-72 PF00702; haloacid dehalogenase-like hydro; E=2.6e-22 NP_867206.1 PMID: 10984043 best DB hits: BLAST: pir:E83451; conserved hypothetical protein PA1548 [imported] -; E=0.036 embl:CAA64890.1; (X95634) fixS [Bradyrhizobium japonicum]; E=0.30 pir:C81074; fixS protein NMB1516 [imported] - Neisseria; E=0.62 COG: PA1548; COG3197 Uncharacterized protein, possibly involved in; E=0.003 NP_867207.1 PMID: 10684935 best DB hits: BLAST: pir:E81578; conserved hypothetical protein CP0417 [imported] -; E=8e-13 pir:C71559; probable outer membrane leader peptide CT073 - Chlamydia; E=9e-13 pir:A81713; conserved hypothetical protein TC0345 [imported] -; E=2e-12 NP_867208.1 PMID: 10731132 best DB hits: BLAST: gb:AAF53305.1; (AE003640) CG16956 gene product [Drosophila; E=0.88 NP_867209.1 best DB hits: BLAST: gb:AAC69888.1; (AF098788) nuclear calmodulin-binding protein; E=0.13 NP_867210.1 PMID: 1756170 best DB hits: BLAST: gb:AAF33506.1; (AF170176) Salmonella typhimurium transcriptional; E=3e-12 gb:AAG59807.1; AF305914_2 (AF305914) HydG [Klebsiella oxytoca]; E=3e-12 swissprot:P25852; HYDG_SALTY transcriptional regulator; E=4e-12 COG: hydG; COG2204 AAA superfamily ATPases with N-terminal receiver; E=2e-12 BS_yqiR_2; COG1221 NtrC family transcriptional regulators, ATPase; E=4e-08 glnG; COG2204 AAA superfamily ATPases with N-terminal receiver; E=1e-07 PFAM: PF00158; Sigma-54 interaction domain; E=2e-05 NP_867212.1 PMID: 1552862 best DB hits: BLAST: swissprot:P25811; THDF_BACSU POSSIBLE THIOPHENE AND FURAN; E=7e-21 gb:AAK06340.1; AE006453_4 (AE006453) GTP-binding protein ThdF; E=3e-20 embl:CAA71458.1; (Y10436) orf452; translated orf similarity to; E=2e-17 COG: BS_thdF; COG0486 Predicted GTPase; E=7e-22 DR2308; COG1160 Predicted GTPases; E=8e-12 TP0550; COG0486 Predicted GTPase; E=1e-11 PFAM: PF00071; Ras family; E=0.77 PF02421; Ferrous iron transport protein B; E=1.3e-05 PF01926; GTPase of unknown function; E=1e-06 NP_867213.1 best DB hits: BLAST: pir:T35587; hypothetical protein SC6G4.36c SC6G4.36c - Streptomyces; E=5e-11 pir:H70859; hypothetical protein Rv3037c - Mycobacterium; E=2e-10 COG: Rv3037c; COG0500 SAM-dependent methyltransferases; E=2e-11 NP_867215.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space NP_867219.1 PMID: 10910347 best DB hits: BLAST: pir:F82557; hypothetical protein XF2449 [imported] - Xylella; E=3e-50 NP_867221.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan NP_867222.1 PMID: 7934829 best DB hits: BLAST: swissprot:P35160; RESA_BACSU RESA PROTEIN ----- pir: S45556; E=3e-14 pir:E69891; cytochrome c biogenesis protein CycX homolog homolog; E=1e-12 ddbj:BAB06587.1; (AP001516) thioldisulfide interchange protein; E=1e-10 COG: BS_resA; COG0526 Thiol-disulfide isomerase and thioredoxins; E=2e-15 PFAM: PF00578; AhpC/TSA family; E=0.0027 PF02630; SCO1/SenC; E=0.28 PF00085; Thioredoxin; E=1.8e-08 NP_867223.1 PMID: 10484179 best DB hits: BLAST: ddbj:BAB07065.1; (AP001518) BH3346~unknown conserved protein in; E=2e-11 swissprot:P49304; MOCC_RHIME RHIZOPINE CATABOLISM PROTEIN MOCC; E=0.84 PFAM: PF01408; Oxidoreductase, NAD-bindi; E=0.38 NP_867224.1 PMID: 10910347 best DB hits: BLAST: pir:G82780; conserved hypothetical protein XF0649 [imported] -; E=3e-13 embl:CAA97104.1; (Z72886) ORF YGR101w [Saccharomyces cerevisiae]; E=2e-10 pir:D71258; probable glpG protein - syphilis spirochete -----; E=1e-09 COG: XF0649; COG0705 Uncharacterized membrane protein (homolog of; E=3e-14 PFAM: PF01694; Rhomboid family; E=2.6e-11 NP_867226.1 PMID: 10865958 best DB hits: BLAST: swissprot:P54466; YQFA_BACSU HYPOTHETICAL 35.6 KD PROTEIN IN; E=4e-73 ddbj:BAB05076.1; (AP001511) BH1357~unknown conserved protein in; E=3e-72 embl:CAA12151.1; (AJ224829) ORF1 [Bacillus megaterium]; E=2e-71 NP_867228.1 PMID: 8955422 best DB hits: BLAST: gb:AAC33456.1; (AF067083) unknown [Vitreoscilla sp.]; E=7e-14 swissprot:P32146; RBN_ECOLI RIBONUCLEASE BN (RNASE BN) -----; E=2e-13 pir:F83526; probable ribonuclease PA0951 [imported] - Pseudomonas; E=1e-12 COG: rbn; COG1295 tRNA-processing ribonuclease BN; E=2e-14 NP_867230.1 PMID: 10984043 best DB hits: BLAST: gb:AAH00605.1; AAH00605 (BC000605) glyoxylate; E=1e-66 ref:XP_005487.2; glyoxylate reductasehydroxypyruvate reductase; E=1e-66 gb:AAF51963.1; (AE003602) CG1236 gene product [Drosophila; E=7e-61 COG: APE1831; COG1052 Lactate dehydrogenase and related dehydrogenases; E=2e-60 PAB0514; COG0111 Phosphoglycerate dehydrogenase and related; E=3e-44 YNL274c; COG1052 Lactate dehydrogenase and related dehydrogenases; E=3e-34 PFAM: PF00389; D-isomer specific 2-hydroxyacid; E=2.4e-06 PF02826; D-isomer specific 2-hydroxyacid; E=2.6e-85 NP_867231.1 PMID: 7511204 best DB hits: BLAST: pir:A56534; P58 protein - bovine ----- gb: AAA17795.1; E=2e-08 gb:AAC52592.1; (U28423) p58 [Mus musculus]; E=1e-07 gb:AAC50502.1; (U28424) p58 [Homo sapiens]; E=2e-07 COG: BB0210; COG0457 TPR-repeat-containing proteins; E=2e-04 PFAM: PF00515; TPR Domain; E=0.65 NP_867233.1 best DB hits: PFAM: PF00397; WW domain; E=0.54 NP_867234.1 PMID: 10910347 best DB hits: BLAST: pir:T34675; probable response regulator - Streptomyces coelicolor; E=1e-05 pir:A82535; transcriptional regulator LuxRUhpA family XF2608; E=4e-05 pir:T35105; probable two-component regulator - Streptomyces; E=7e-05 COG: XF2608; COG2197 Response regulators consisting of a CheY-like; E=4e-06 PA3420; COG2909 ATP-dependent transcriptional regulator; E=4e-04 PA3714; COG2197 Response regulators consisting of a CheY-like; E=4e-04 PFAM: PF00989; PAS domain; E=4.2e-06 PF00196; Bacterial regulatory proteins, luxR; E=3.1e-14 NP_867238.1 PMID: 8843436 best DB hits: BLAST: embl:CAB56131.1; (AL117669) hypothetical protein [Streptomyces; E=8e-21 pir:T35709; hypothetical protein SC7H1.14 SC7H1.14 - Streptomyces; E=9e-20 NP_867239.1 PMID: 8905231 best DB hits: BLAST: swissprot:P74696; TRUB_SYNY3 TRNA PSEUDOURIDINE SYNTHASE B (TRNA; E=5e-36 swissprot:P72154; TRUB_PSEAE TRNA PSEUDOURIDINE SYNTHASE B (TRNA; E=2e-32 swissprot:P32732; TRUB_BACSU TRNA PSEUDOURIDINE SYNTHASE B (TRNA; E=1e-27 COG: slr0457; COG0130 Pseudouridine synthase; E=4e-37 PFAM: PF01509; TruB family pseudouridylate synthase; E=2.5e-39 NP_867241.1 PMID: 6313685 best DB hits: BLAST: pdb:1F5B; A Chain A, Crystal Structure Of F2h Ferredoxin 1; E=3e-21 pdb:1FRM; Ferredoxin (Fdi) Mutant With Glu 46 Replaced By; E=4e-21 swissprot:P03942; FER_THETH FERREDOXIN ----- pir: FETWT; E=8e-21 COG: PA3621; COG1146 Ferredoxin 3; E=2e-20 APE2605; COG0437 Fe-S-cluster-containing hydrogenase components 1; E=0.004 ygfS; COG1142 Fe-S-cluster-containing hydrogenase components 2; E=0.005 PFAM: PF00037; 4Fe-4S binding domain; E=2.1e-07 NP_867242.1 PMID: 8905232 best DB hits: BLAST: swissprot:P75876; YCCW_ECOLI HYPOTHETICAL 41.1 KD PROTEIN IN; E=7e-47 ddbj:BAA35732.1; (D90734) Hypothetical protein [Escherichia coli]; E=7e-47 gb:AAG55453.1; AE005286_12 (AE005286) oxidoreductase; E=8e-47 COG: yccW; COG1092 Predicted SAM-dependent methyltransferases; E=7e-48 BH0124; COG2813 16S RNA G1207 methylase RsmC; E=1e-04 PA3048_2; COG1092 Predicted SAM-dependent methyltransferases; E=1e-04 PFAM: PF00107; Zinc-binding dehydrogenases; E=0.039 PF02005; N2,N2-dimethylguanosine tRNA methylt; E=0.033 NP_867243.1 PMID: 9634230 PMID: 7482699 best DB hits: BLAST: pir:B70700; hypothetical protein Rv0020c - Mycobacterium; E=8e-06 pir:T10015; hypothetical protein MLB1770.15c - Mycobacterium leprae; E=4e-05 ddbj:BAB20624.1; (AB052847) adenylate cyclase; E=0.001 COG: Rv0020c_2; COG1716 FHA-domain-containing proteins; E=4e-06 PFAM: PF00498; FHA domain; E=8.9e-17 NP_867246.1 PMID: 9929392 best DB hits: BLAST: gb:AAC35721.1; (AF041468) ribosomal protein L36 [Guillardia; E=8e-07 pir:D82269; probable ribosomal protein L36 VC0879 [imported] -; E=1e-05 pir:B83196; conserved hypothetical protein PA3600 [imported] -; E=7e-05 COG: VC0879; COG0257 Ribosomal protein L36; E=9e-07 PFAM: PF00444; Ribosomal protein L36; E=6.9e-09 NP_867247.1 PMID: 11259647 NP_867248.1 PMID: 11097914 best DB hits: BLAST: gb:AAF01193.1; AF179401_2 (AF179401) unknown [Sinorhizobium; E=9e-28 swissprot:P74615; YE83_SYNY3 HYPOTHETICAL 18.5 KDA PROTEIN SLL1483; E=2e-27 swissprot:O33752; YH35_SYNP2 HYPOTHETICAL 13.9 KDA PROTEIN SLL1735; E=7e-20 COG: sll1483; COG2335 Secreted and surface protein containing; E=2e-28 PFAM: PF02469; Fasciclin domain; E=6.8e-44 NP_867252.1 best DB hits: PFAM: PF01002; Flavivirus non-structural prot; E=0.28 NP_867254.1 best DB hits: BLAST: swissprot:O69159; ACPS_BRAJA HOLO-[ACYL-CARRIER PROTEIN]; E=2e-10 swissprot:Q9Z8M5; ACPS_CHLPN HOLO-[ACYL-CARRIER PROTEIN]; E=5e-09 swissprot:P15368; FAS2_PENPA FATTY ACID SYNTHASE, SUBUNIT ALPHA; E=1e-07 COG: CPn0313; COG0736 Phosphopantetheinyl transferase (holo-ACP; E=5e-10 VC2457; COG0736 Phosphopantetheinyl transferase (holo-ACP synthase); E=2e-06 aq_813; COG0736 Phosphopantetheinyl transferase (holo-ACP; E=3e-06 PFAM: PF01648; 4'-phosphopantetheinyl transferase s; E=6.1e-24 NP_867255.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA NP_867259.1 PMID: 9002610 best DB hits: BLAST: embl:CAA64383.1; (X94756) cystathionine gamma-synthase; E=2e-75 gb:AAF26162.1; AC008261_19 (AC008261) cystathionine; E=2e-75 swissprot:P55217; METB_ARATH CYSTATHIONINE GAMMA-SYNTHASE,; E=3e-75 COG: APE1226; COG0626 Cystathionine beta-lyases/cystathionine; E=1e-64 PA5025; COG2873 O-acetylhomoserine sulfhydrylase; E=4e-47 PH1093; COG0626 Cystathionine beta-lyases/cystathionine; E=5e-47 PFAM: PF01053; Cys/Met metabolism PLP-depend; E=4.5e-154 NP_867260.1 PMID: 9843488 best DB hits: BLAST: pir:T45483; cystathionine gamma-lyase homolog [imported] -; E=9e-93 pir:F83595; probable cystathionine gamma-lyase PA0400 [imported] -; E=1e-92 gb:AAG19548.1; (AE005045) cystathionine alpha synthase; MetB; E=3e-92 COG: PA0400; COG0626 Cystathionine beta-lyases/cystathionine; E=1e-93 PFAM: PF01053; Cys/Met metabolism PLP-depend; E=2.9e-199 NP_867262.1 PMID: 9403685 best DB hits: BLAST: pir:G70121; conserved hypothetical protein BB0175 - Lyme disease; E=2e-13 swissprot:P71761; YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480; E=3e-11 pir:D83106; hypothetical protein PA4323 [imported] - Pseudomonas; E=1e-09 COG: BB0175; COG1721 Uncharacterized ACR; E=2e-14 APE1031; COG2425 Uncharacterized ACR; E=0.002 VNG0222C; COG1721 Uncharacterized ACR; E=0.008 PFAM: PF01882; Protein of unknown function DUF58; E=5.9e-18 NP_867263.1 PMID: 11756688 NP_867264.1 PMID: 10617197 best DB hits: BLAST: gb:AAD03363.1; (AC005957) EnSpm-like transposon protein; E=0.89 NP_867265.1 PMID: 7783620 best DB hits: BLAST: pir:A81937; IgA-specific metalloendopeptidase (EC 3.4.24.13) NMA0905; E=6e-08 pir:C81169; IgA-specific metalloendopeptidase (EC 3.4.24.13) NMB0700; E=9e-07 pir:T18296; myosin heavy chain - Entamoeba histolytica ----- gb:; E=9e-05 NP_867269.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_867270.1 PMID: 9346930 best DB hits: BLAST: pir:T08617; aggregation factor core protein MAFp3, isoform E -; E=5e-04 NP_867273.1 PMID: 10830266 best DB hits: BLAST: gb:AAF35290.1; AF194444_3 (AF194444) SqdC [Sinorhizobium meliloti]; E=2e-18 pir:D81275; probable nucleotide sugar dehydratase Cj1319 [imported]; E=3e-15 pir:D70696; probable dtdp-glucose 4 - Mycobacterium tuberculosis; E=9e-15 COG: Cj1319; COG0451 Nucleoside-diphosphate-sugar epimerases; E=3e-16 aq_1069; COG1087 UDP-glucose 4-epimerase; E=1e-12 MTH1789; COG1088 dTDP-D-glucose 4,6-dehydratase; E=3e-11 PFAM: PF01073; 3-beta hydroxysteroid dehydrogenase; E=0.014 PF01370; NAD dependent epimerase/dehydratase; E=5.8e-16 NP_867274.1 PMID: 10567266 best DB hits: BLAST: pir:E75426; GTP-binding translation elongation factor homolog; E=1e-163 pir:H81111; GTP-binding protein TypA NMB1199 [imported] - Neisseria; E=1e-161 pir:D81906; probable GTP-binding protein NMA1370 [imported] -; E=1e-161 COG: DR1198; COG1217 Predicted membrane GTPase involved in stress; E=1e-164 typA; COG1217 Predicted membrane GTPase involved in stress response; E=1e-156 BS_ylaG; COG1217 Predicted membrane GTPase involved in stress; E=1e-155 PFAM: PF00009; Elongation factor Tu family; E=2.1e-91 PF00679; Elongation factor G C-terminus; E=3.9e-06 NP_867275.1 PMID: 9537320 best DB hits: BLAST: pir:A70471; phosphoglycerate mutase 1 - Aquifex aeolicus -----; E=0.006 pir:G69831; phosphoglycerate mutase (glycolysis) homolog yhfR -; E=0.012 embl:CAA99510.1; (Z75191) ORF YOR283w [Saccharomyces; E=0.021 COG: aq_1990; COG0406 Phosphoglycerate; E=6e-04 BS_yhfR; COG0406 Phosphoglycerate mutase/fructose-2,6-bisphosphatase; E=0.001 YOR283w; COG0406 Phosphoglycerate; E=0.002 PFAM: PF00300; Phosphoglycerate mutase; E=3.9e-05 NP_867276.1 best DB hits: BLAST: pir:F82572; sodium ABC transporter ATP-binding protein XF2329; E=8e-44 swissprot:P46903; NATA_BACSU ATP-BINDING TRANSPORT PROTEIN NATA; E=2e-40 pir:B75459; sodium extrusion protein NatA - Deinococcus radiodurans; E=3e-39 COG: XF2329; COG1131 ABC-type multidrug transport system, ATPase; E=8e-45 ybhF; COG1131 ABC-type multidrug transport system, ATPase component; E=7e-32 PFAM: PF00448; SRP54-type protein, GTPase do; E=0.26 PF00005; ABC transporter; E=6.2e-51 NP_867277.1 PMID: 10567266 best DB hits: BLAST: pir:A75459; sodium extrusion protein NatB - Deinococcus radiodurans; E=1e-09 swissprot:P46904; NATB_BACSU PROTEIN NATB ----- pir: B69666; E=3e-07 ddbj:BAA22237.1; (AB000617) NatB [Bacillus subtilis]; E=0.002 COG: DR0926; COG1668 ATP-dependent Na+ efflux pump membrane component; E=1e-10 ybhS; COG0842 Permease component of an ABC-transporter; E=0.003 PFAM: PF02517; CAAX amino terminal protease; E=1.8e-15 NP_867278.1 PMID: 9384377 best DB hits: BLAST: pir:A55856; llm protein - Staphylococcus aureus ----- ddbj:; E=7e-25 pir:B69721; teichoic acid linkage unit synthesis tagO - Bacillus; E=5e-24 ddbj:BAA82114.1; (AB022909) RgpG [Streptococcus mutans]; E=5e-23 COG: BS_tagO; COG0472 UDP-N-acetylmuramyl pentapeptide; E=4e-25 PFAM: PF00953; Glycosyl transferase; E=4e-32 NP_867281.1 best DB hits: BLAST: pir:F70345; polysaccharide biosynthesis protein - Aquifex aeolicus; E=0.61 NP_867282.1 PMID: 10484179 PMID: 7493321 best DB hits: BLAST: ddbj:BAB06566.1; (AP001516) BH2847~unknown conserved protein; E=9e-22 swissprot:O31613; YJBO_BACSU HYPOTHETICAL 31.5 KD PROTEIN IN; E=3e-19 swissprot:Q45480; YLYB_BACSU HYPOTHETICAL 33.7 KD PROTEIN IN; E=8e-19 COG: BH2847; COG0564 Pseudouridylate synthases, 23S RNA-specific; E=9e-23 PFAM: PF00849; RNA pseudouridylate synthase; E=1.7e-33 NP_867283.1 PMID: 8300539 PMID: 2164680 best DB hits: BLAST: gb:AAF33434.1; (AF233324) S. typhimurium DNA-dependent ATPase DNA; E=5e-61 swissprot:P15043; RECQ_ECOLI ATP-DEPENDENT DNA HELICASE RECQ; E=6e-61 gb:AAA24517.1; (M30198) recQ [Escherichia coli]; E=1e-60 COG: recQ; COG0514 Superfamily II DNA helicase; E=1e-61 YDR021w; COG0513 Superfamily II DNA and RNA helicases; E=8e-10 PFAM: PF00270; DEAD/DEAH box helicase; E=4.1e-34 PF00271; Helicase conserved C-terminal doma; E=5.1e-23 NP_867284.1 PMID: 8905231 PMID: 8304179 best DB hits: BLAST: swissprot:P73248; DHPS_SYNY3 DIHYDROPTEROATE SYNTHASE (DHPS); E=2e-51 pir:E83053; dihydropteroate synthase PA4750 [imported] - Pseudomonas; E=2e-49 pir:E72425; dihydropteroate synthase (EC 2.5.1.15) TM0040; E=2e-45 COG: slr2026; COG0294 Dihydropteroate synthase; E=2e-52 PFAM: PF00809; Dihydropteroate synthase; E=1.1e-113 NP_867285.1 PMID: 10484179 PMID: 7768836 best DB hits: BLAST: ddbj:BAB05062.1; (AP001511) coproporphyrinogen III oxidase; E=1e-32 swissprot:O67886; HEMN_AQUAE OXYGEN-INDEPENDENT COPROPORPHYRINOGEN; E=2e-31 ddbj:BAB10571.1; (AB008265) oxygen-independent; E=6e-30 COG: BH1343; COG0635 Coproporphyrinogen III oxidase and related FeS; E=1e-33 PFAM: PF02473; Oxygen-independent Coproporphy; E=9.5e-08 NP_867286.1 PMID: 9371463 best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=3e-13 pir:C75264; probable serinethreonine protein kinase - Deinococcus; E=1e-08 swissprot:P42111; YXAL_BACSU HYPOTHETICAL 38.5 KDA PROTEIN IN; E=5e-07 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=3e-14 DR2518_2; COG1520 Uncharacterized proteins of WD40-like repeat; E=5e-09 BS_yxaL; COG1520 Uncharacterized proteins of WD40-like repeat family; E=4e-08 PFAM: PF01011; PQQ enzyme repeat; E=0.0066 NP_867287.1 PMID: 8067995 best DB hits: BLAST: gb:AAF08579.1; AC011623_12 (AC011623) dehydroquinase; E=2e-74 pir:S46210; 3-dehydroquinate dehydratase (EC 4.2.1.10) shikimate; E=6e-67 pir:T06264; 3-dehydroquinate dehydratase (EC 4.2.1.10) shikimate; E=2e-65 COG: BS_aroD; COG0169 Shikimate 5-dehydrogenase; E=4e-39 PAB0299; COG0710 3-dehydroquinate dehydratase; E=6e-18 Ta0284; COG0169 Shikimate 5-dehydrogenase; E=4e-17 PFAM: PF01487; Type I 3-dehydroquinase; E=1.6e-40 PF01488; Shikimate / quinate 5-dehydrogen; E=8e-72 NP_867288.1 PMID: 9642221 best DB hits: BLAST: ddbj:BAA31547.1; (AB010956) metal-activated pyridoxal enzyme; E=1e-15 gb:AAG24954.1; AF242414_1 (AF242414) unknown [Paenibacillus; E=0.004 swissprot:P71683; YE14_MYCTU HYPOTHETICAL 14.3 KDA PROTEIN RV1414; E=0.65 PFAM: PF00842; Alanine racemase; E=0.0019 NP_867289.1 PMID: 9507020 best DB hits: BLAST: ddbj:BAB02539.1; (AP000371) DegP protease precursor [Arabidopsis; E=5e-87 swissprot:O22609; DEGP_ARATH PROTEASE DO-LIKE PRECURSOR -----; E=9e-87 ddbj:BAA98101.1; (AB024023) contains similarity to serine; E=2e-71 COG: TP0773; COG0265 Trypsin-like serine proteases, typically; E=3e-48 CT823; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=3e-37 Cj1228c; COG0265 Trypsin-like serine proteases, typically; E=2e-36 PFAM: PF00089; Trypsin; E=5.9e-26 PF00595; PDZ domain (Also known as DHR or GLG; E=0.0029 NP_867290.1 PMID: 2203540 best DB hits: BLAST: gb:AAC82369.1; (AF061965) RNA polymerase subunit sigma-54; E=1e-121 gb:AAG58336.1; AE005548_7 (AE005548) RNA polymerase, sigma(54 or; E=7e-59 swissprot:P24255; RP54_ECOLI RNA POLYMERASE SIGMA-54 FACTOR; E=2e-58 COG: rpoN; COG1508 DNA-directed RNA polymerase specialized sigma; E=2e-59 PFAM: PF00356; Bacterial regulatory proteins; E=0.018 PF00309; Sigma-54 factors family; E=4e-155 NP_867291.1 PMID: 10567266 PMID: 2674903 best DB hits: BLAST: swissprot:Q9XAI4; RECR_STRCO RECOMBINATION PROTEIN RECR -----; E=3e-42 swissprot:Q9ZNA2; RECR_DEIRA RECOMBINATION PROTEIN RECR -----; E=4e-42 swissprot:O69520; RECR_MYCLE RECOMBINATION PROTEIN RECR -----; E=5e-42 COG: DR0198; COG0353 Recombinational DNA repair protein; E=4e-43 PFAM: PF00633; Helix-hairpin-helix motif.; E=0.21 PF02904; RuvA central domain II; E=0.049 PF02132; RecR protein; E=1.8e-14 NP_867292.1 PMID: 11823852 best DB hits: BLAST: swissprot:P17577; YBAB_ECOLI HYPOTHETICAL 12.0 KDA PROTEIN IN; E=0.12 swissprot:Q9ZCA0; Y866_RICPR HYPOTHETICAL PROTEIN RP866 -----; E=0.12 gb:AAK02289.1; (AE006055) unknown [Pasteurella multocida]; E=0.24 PFAM: PF02575; Uncharacterized BCR, YbaB family COG; E=2.7e-07 NP_867293.1 PMID: 10192928 PMID: 2186364 best DB hits: BLAST: ddbj:BAB03753.1; (AP001507) DNA polymerase III gamma and tau; E=9e-72 pir:S13786; DNA-directed DNA polymerase (EC 2.7.7.7) III chain dnaX; E=5e-66 swissprot:P09122; DP3X_BACSU DNA POLYMERASE III SUBUNIT GAMMATAU; E=5e-66 COG: BH0034; COG2812 DNA polymerase III, gamma/tau subunits; E=9e-73 PFAM: PF00693; Thymidine kinase from herpesviru; E=0.18 PF00004; ATPase associated with va; E=7.6e-14 NP_867296.1 PMID: 11823852 NP_867298.1 PMID: 10952301 best DB hits: BLAST: pir:D82351; rarD protein VC0195 [imported] - Vibrio cholerae (group; E=4e-38 embl:CAC08293.1; (AL392148) integral membrane protein; E=1e-36 gb:AAG59015.1; AE005613_8 (AE005613) orf, hypothetical protein; E=1e-35 COG: VC0195; COG2962 Predicted permeases; E=3e-39 PFAM: PF00892; Integral membrane protein DUF6; E=5.7e-12 NP_867299.1 PMID: 3880746 best DB hits: BLAST: pir:S72705; mycocerosate synthase (EC 2.3.1.111) - Mycobacterium; E=0.0 pir:H70819; probable polyketide synthase - Mycobacterium tuberculosis; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=1e-180 COG: PA2402_3; COG1020 Non-ribosomal peptide synthetase modules and related; E=4e-99 BS_ppsD_3; COG1020 Non-ribosomal peptide synthetase modules and; E=4e-92 PA2424_2; COG1020 Non-ribosomal peptide synthetase modules and related; E=1e-91 PFAM: PF00108; Thiolase, N-terminal domain; E=2.7e-06 PF00109; Beta-ketoacyl synthase, N-ter; E=7.7e-115 PF02801; Beta-ketoacyl synthase, C-ter; E=2.4e-81 NP_867300.1 PMID: 9371463 best DB hits: BLAST: pir:F69192; conserved hypothetical protein MTH695 - Methanobacterium; E=2e-30 swissprot:Q58902; YF07_METJA HYPOTHETICAL PROTEIN MJ1507 -----; E=5e-10 gb:AAB89778.1; (AE001001) conserved hypothetical protein; E=2e-09 COG: MTH695; COG0577 Predicted permease; E=2e-31 PFAM: PF02687; Predicted permease; E=4.3e-26 NP_867306.1 PMID: 12024217 NP_867309.1 PMID: 8843436 best DB hits: BLAST: embl:CAC17654.1; (AL450450) ECF sigma factor; E=0.001 pir:G83282; probable sigma-70 factor, ECF subfamily PA2896; E=0.003 gb:AAA67931.1; (U16817) alternative sigma factor; E=0.014 COG: PA2896; COG1595 DNA-directed RNA polymerase specialized sigma; E=3e-04 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=3.9e-08 PF01603; Protein phosphatase 2A regulatory; E=0.46 NP_867310.1 PMID: 11062057 best DB hits: BLAST: gb:AAG32160.1; AF206329_1 (AF206329) polydom protein [Mus musculus]; E=0.28 NP_867311.1 best DB hits: BLAST: gb:AAD46732.1; AF078736_12 (AF078736) glycosyl; E=7e-20 gb:AAD50490.1; AF172324_8 (AF172324) WbnE [Escherichia coli]; E=9e-18 gb:AAF23993.1; (AF035937) WbpT [Pseudomonas aeruginosa]; E=1e-16 COG: DR1555; COG0438 Predicted glycosyltransferases; E=6e-14 PFAM: PF00534; Glycosyl transferases group 1; E=1.9e-35 NP_867313.1 PMID: 10192928 best DB hits: BLAST: pir:T36331; probable hypoxanthine phosphoribosyltransferase -; E=6e-27 ddbj:BAB03803.1; (AP001507) hypoxanthine-guanine; E=8e-23 embl:CAB60853.1; (AL132877) predicted using Genefinder; E=1e-22 COG: BH0084; COG0634 Hypoxanthine-guanine phosphoribosyltransferase; E=7e-24 BU169; COG0462 Phosphoribosylpyrophosphate synthetase; E=0.002 APE2071; COG2236 Predicted phosphoribosyltransferases; E=0.007 PFAM: PF00156; Phosphoribosyl transferase domai; E=1.5e-15 NP_867316.1 PMID: 9278503 best DB hits: BLAST: swissprot:P29217; YCEH_ECOLI HYPOTHETICAL 24.2 KDA PROTEIN IN; E=2e-19 gb:AAG55813.1; AE005317_2 (AE005317) orf, hypothetical protein; E=2e-19 pir:D83213; conserved hypothetical protein PA3453 [imported] -; E=1e-18 COG: yceH; COG3132 Uncharacterized BCR; E=1e-20 PFAM: PF01213; CAP protein; E=0.44 PF02465; Flagellar hook-associated protein 2; E=0.41 PF01519; Protein of unknown function DUF16; E=0.89 NP_867317.1 PMID: 8300626 best DB hits: BLAST: pir:A81368; probable 2-acylglycerophosphoethanolamine acyltransferase; E=2e-89 swissprot:P31119; AAS_ECOLI AAS BIFUNCTIONAL PROTEIN [INCLUDES:; E=5e-59 gb:AAG57948.1; AE005512_7 (AE005512); E=6e-59 COG: Cj0938c_3; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid; E=6e-66 aas_2; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases; E=6e-50 VNG1339C; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid; E=2e-28 PFAM: PF01553; Acyltransferase; E=7.6e-22 PF00501; AMP-binding enzyme; E=2.4e-07 NP_867319.1 PMID: 12093901 NP_867321.1 PMID: 3012466 best DB hits: BLAST: embl:CAB62739.1; (AL133423) aldose 1-epimerase; E=8e-92 pir:H72395; probable aldose 1-epimerase (EC 5.1.3.3) - Thermotoga; E=4e-85 swissprot:P05149; GALM_ACICA ALDOSE 1-EPIMERASE PRECURSOR; E=2e-80 COG: TM0282; COG2017 Galactose mutarotase and related enzymes; E=3e-86 PFAM: PF01263; Aldose 1-epimerase; E=3.1e-111 NP_867322.1 uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function NP_867324.1 PMID: 8041620 best DB hits: BLAST: swissprot:P37390; XYLR_ECOLI XYLOSE OPERON REGULATORY PROTEIN; E=9e-48 swissprot:P45043; XYLR_HAEIN XYLOSE OPERON REGULATORY PROTEIN; E=1e-43 ddbj:BAB03212.1; (AB046360) xylose operon regulatory; E=8e-38 COG: xylR_1; COG1609 Transcriptional regulators; E=3e-25 xylR_2; COG2207 AraC-type DNA-binding domain-containing proteins; E=7e-17 PA2320; COG1609 Transcriptional regulators; E=4e-08 PFAM: PF00165; Bacterial regulatory helix-turn-heli; E=2.1e-20 NP_867328.1 PMID: 9537320 PMID: 3889910 best DB hits: BLAST: swissprot:O67695; RF2_AQUAE PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2); E=3e-65 swissprot:P28367; RF2_BACSU PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2); E=1e-64 pir:H82016; translation releasing factor RF-2 prfB NMA0224; E=3e-64 COG: aq_1840; COG1186 Protein chain release factor B; E=2e-66 PFAM: PF00213; ATP synthase delta (OSCP) subunit; E=0.085 PF00472; Peptidyl-tRNA hydrolase domain; E=3.4e-52 NP_867330.1 PMID: 10567266 best DB hits: BLAST: swissprot:Q9ZDM1; TRMU_RICPR PROBABLE TRNA; E=5e-62 pir:H75357; tRNA; E=2e-53 ddbj:BAB04980.1; (AP001511); E=7e-49 COG: RP306; COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate); E=5e-63 PFAM: PF00764; Arginosuccinate synthase; E=0.0016 PF02568; Thiamine biosynthesis protein; E=0.0039 NP_867331.1 best DB hits: PFAM: PF00884; Sulfatase; E=0.0047 NP_867335.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis NP_867336.1 PMID: 11214968 best DB hits: BLAST: swissprot:P39074; BMRU_BACSU BMRU PROTEIN ----- pir: F69595; E=0.057 pir:H70861; hypothetical protein Rv2252 - Mycobacterium tuberculosis; E=0.26 pir:H69995; hypothetical protein ytlR - Bacillus subtilis -----; E=0.35 NP_867344.1 best DB hits: PFAM: PF00036; EF hand; E=0.17 NP_867346.1 PMID: 9083068 best DB hits: BLAST: gb:AAA62535.1; (U21320) contains TPR domain-like repeats; E=0.14 gb:AAB63465.1; (U77412) O-linked GlcNAc transferase; E=0.14 PFAM: PF02836; Glycosyl hydrolases family 2,; E=0.12 NP_867347.1 best DB hits: BLAST: pir:C75548; hypothetical protein - Deinococcus radiodurans (strain; E=0.005 NP_867349.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation NP_867350.1 PMID: 9524235 best DB hits: BLAST: ddbj:BAA25303.1; (AB003477) hypothetical protein [Synechococcus; E=4e-04 pir:A75469; conserved hypothetical protein - Deinococcus radiodurans; E=0.099 gb:AAK03519.1; (AE006180) unknown [Pasteurella multocida]; E=0.37 COG: DR0837; COG0433 Predicted ATPase; E=0.009 NP_867352.1 best DB hits: BLAST: gb:AAF58230.1; (AE003814) CG12864 gene product [Drosophila; E=0.58 NP_867355.1 PMID: 7910580 best DB hits: BLAST: embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=1e-38 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=6e-38 pdb:1E2S; P Chain P, Crystal Structure Of An Arylsulfatase A; E=1e-37 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=2e-29 PFAM: PF00884; Sulfatase; E=6.7e-42 NP_867356.1 PMID: 8997703 best DB hits: BLAST: pir:C75037; methanol dehydrogenase regulatory protein (moxr-3); E=9e-65 pir:E70792; probable regulatory protein - Mycobacterium tuberculosis; E=2e-64 pir:B71126; hypothetical protein PH0776 - Pyrococcus horikoshii; E=2e-63 COG: PAB0848; COG0714 MoxR-like ATPases; E=9e-66 PFAM: PF00004; ATPase associated with; E=6.4e-06 PF02223; Thymidylate kinase; E=0.36 PF01078; Magnesium chelatase, subunit; E=4.3e-05 NP_867357.1 PMID: 1644792 best DB hits: BLAST: gb:AAA36453.1; (M95678) phospholipase C-beta-2 [Homo sapiens]; E=2e-04 gb:AAG51636.1; AC018908_2 (AC018908) unknown protein; 69131-60853; E=0.001 pir:F71318; conserved hypothetical protein TP0494 - syphilis; E=0.001 COG: TP0494; COG1579 Zn-ribbon protein, possibly nucleic acid-binding; E=1e-04 NMB1472; COG0542 ATPases with chaperone activity, ATP-binding domain; E=0.008 PFAM: PF02591; Uncharacterized ACR, COG1579; E=0.88 NP_867358.1 PMID: 9784136 best DB hits: BLAST: pir:D75341; conserved hypothetical protein - Deinococcus radiodurans; E=3e-13 swissprot:O34932; YTAG_BACSU HYPOTHETICAL 22.0 KD PROTEIN IN; E=2e-12 pir:B71509; probable phosphatasekinase - Chlamydia trachomatis; E=5e-11 COG: DR1892; COG0237 Predicted nucleotide kinase; E=3e-14 PFAM: PF01583; Adenylylsulfate kinase; E=0.81 PF00485; Phosphoribulokinase / Uridine; E=0.0071 PF01121; Uncharacterized protein famil; E=1.1e-19 NP_867360.1 best DB hits: PFAM: PF00639; PPIC-type PPIASE domain.; E=0.81 NP_867361.1 PMID: 8843436 best DB hits: BLAST: embl:CAB94634.1; (AL359215) secreted glycosyl hydrolase.; E=1e-12 pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=3e-11 pir:T35028; probable glycosyl hydrolase - Streptomyces coelicolor; E=0.054 NP_867362.1 PMID: 8299947 best DB hits: BLAST: pir:T46882; phosphoribosylamine--glycine ligase (EC 6.3.4.13); E=1e-108 pir:I67805; purine synthesis multifunctional protein - mouse -----; E=1e-108 gb:AAC53250.1; (U20892) glycinamide ribonucleotide synthetase; E=1e-107 COG: BH0634; COG0151 Phosphoribosylamine-glycine ligase; E=1e-108 PFAM: PF02844; Phosphoribosylglycinamide syn; E=6.3e-55 PF02842; Phosphoribosylglycinamide syn; E=2.5e-30 PF01837; Domain of unknown function DU; E=0.23 NP_867364.1 PMID: 10710307 PMID: 9670013 best DB hits: BLAST: gb:AAK04063.1; (AE006234) unknown [Pasteurella multocida]; E=2e-06 pir:A81794; probable rotamase NMA2206 [imported] - Neisseria; E=7e-05 pir:B81216; peptidyl-prolyl cis-trans isomerase NMB0281 [imported] -; E=1e-04 COG: NMB0281; COG0760 Parvulin-like peptidyl-prolyl isomerase; E=1e-05 PFAM: PF00639; PPIC-type PPIASE domain.; E=0.0032 NP_867365.1 PMID: 10910347 best DB hits: BLAST: pir:B82621; nicotinate-mononucleotide pyrophosphorylase XF1925; E=4e-45 swissprot:P77938; NADC_RHORU PROBABLE NICOTINATE-NUCLEOTIDE; E=4e-43 gb:AAG47789.1; AF311738_5 (AF311738) NadC [Mesorhizobium loti]; E=4e-39 COG: XF1925; COG0157 Nicotinate-nucleotide pyrophosphorylase; E=4e-46 PFAM: PF00364; Biotin-requiring enzyme; E=0.5 PF02749; Quinolinate phosphoribosyl tran; E=8.9e-16 PF01729; Quinolinate phosphoribosyl tran; E=1.1e-32 NP_867366.1 PMID: 10952301 best DB hits: BLAST: pir:D82262; probable capsular polysaccharide biosynthesis; E=3e-87 gb:AAG57107.1; AE005430_7 (AE005430) colanic acid; E=4e-82 swissprot:P71241; WCAJ_ECOLI COLANIC BIOSYNTHESIS; E=5e-82 COG: VC0934; COG2148 Sugar transferases involved in lipopolysaccharide; E=3e-88 PFAM: PF02397; Bacterial sugar transferase; E=0.25 NP_867369.1 PMID: 10360571 best DB hits: BLAST: pir:F72424; hypothetical protein - Thermotoga maritima (strain MSB8); E=0.28 NP_867372.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_867373.1 best DB hits: BLAST: gb:AAD45539.1; U70376_1 (U70376) InsA [Streptomyces netropsis]; E=5e-33 gb:AAG60893.1; AF322013_12 (AF322013) ID460 [Bradyrhizobium; E=8e-33 ddbj:BAA19966.1; (D63923) transposase [Acetobacter pasteurianus]; E=1e-26 NP_867377.1 PMID: 7961421 best DB hits: BLAST: gb:AAF01335.1; AF190580_1 (AF190580) alternate sigma factor AlgT; E=2e-09 pir:A69872; RNA polymerase ECF-type sigma factor homolog ylaC -; E=2e-09 swissprot:Q06198; RPSH_PSEAE RNA POLYMERASE SIGMA-H FACTOR; E=2e-09 COG: BS_ylaC; COG1595 DNA-directed RNA polymerase specialized sigma; E=2e-10 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=5.5e-14 NP_867378.1 PMID: 10684935 best DB hits: BLAST: gb:AAF73522.1; (AE002272) serinethreonine-protein kinase; E=6e-05 pir:E71486; probable st protein kinase - Chlamydia trachomatis; E=3e-04 swissprot:P54737; PKN5_MYXXA SERINETHREONINE-PROTEIN KINASE PKN5; E=0.001 COG: CT673; COG0515 Serine/threonine protein kinases; E=3e-05 PFAM: PF00069; Protein kinase domain; E=0.21 NP_867380.1 PMID: 10360571 PMID: 3097003 best DB hits: BLAST: pir:H72321; glycogen synthase - Thermotoga maritima (strain MSB8); E=6e-79 gb:AAK04797.1; AE006303_3 (AE006303) glycogen synthase (EC; E=1e-77 swissprot:O08328; GLGA_BACST GLYCOGEN SYNTHASE (STARCH [BACTERIAL; E=2e-76 COG: TM0895; COG0297 Glycogen synthase; E=6e-80 BH1415_2; COG0438 Predicted glycosyltransferases; E=6e-10 PH0069; COG0297 Glycogen synthase; E=7e-09 PFAM: PF00534; Glycosyl transferases group 1; E=8.9e-10 NP_867382.1 PMID: 10360571 best DB hits: BLAST: pir:A72322; hypothetical protein TM0896 - Thermotoga maritima; E=3e-47 ddbj:BAB09478.1; (AB012246) galactose-1-phosphate uridyl; E=1e-36 gb:AAF64398.1; AF148553_2 (AF148553) adenylylsulfate:phosphate; E=1e-35 COG: TM0896; COG1085 Galactose-1-phosphate uridylyltransferase; E=3e-48 NP_867385.1 PMID: 10360571 best DB hits: BLAST: pir:G72299; conserved hypothetical protein - Thermotoga maritima; E=0.001 gb:AAB88948.1; (AE000945) conserved hypothetical transmembrane; E=0.21 COG: TM1060; COG0477 Permeases of the major facilitator superfamily; E=1e-04 NP_867388.1 PMID: 8843436 best DB hits: BLAST: pir:T36106; hypothetical protein SCE15.03c - Streptomyces coelicolor; E=3e-87 pir:A83179; conserved hypothetical protein PA3729 [imported] -; E=4e-73 gb:AAG58185.1; AE005534_7 (AE005534) membrane protein; E=2e-28 COG: PA3729; COG2268 Uncharacterized BCR; E=4e-74 NP_867389.1 PMID: 10984043 best DB hits: BLAST: pir:D83181; hypothetical protein PA3728 [imported] - Pseudomonas; E=0.0 pir:T36105; probable large glycinealanine rich protein - Streptomyces; E=1e-165 pir:D75436; ATP-dependent Clp proteinase, ATP-binding subunit ClpC -; E=0.19 PFAM: PF00004; ATPase associated with; E=0.00026 NP_867390.1 best DB hits: BLAST: pir:G82243; conserved hypothetical protein VC1079 [imported] -; E=1e-42 pir:F75007; sua5 related protein PAB1302 - Pyrococcus abyssi (strain; E=5e-41 embl:CAB57638.1; (Y18930) hypothetical protein [Sulfolobus; E=2e-39 COG: VC1079; COG0009 translation factor (SUA5); E=1e-43 PFAM: PF01300; SUA5/yciO/yrdC family; E=2.7e-50 NP_867391.1 PMID: 98151343 best DB hits: BLAST: gb:AAF55179.1; (AE003708) CG5038 gene product [Drosophila; E=4e-10 gb:AAF26789.1; AC016829_13 (AC016829) O-linked GlcNAc; E=4e-09 ddbj:BAB21885.1; (AB055261) hypothetical protein [Macaca; E=2e-08 COG: MTH72; COG0457 TPR-repeat-containing proteins; E=4e-07 PFAM: PF00515; TPR Domain; E=1.6e-05 NP_867395.1 PMID: 10731132 best DB hits: BLAST: gb:AAF57913.1; (AE003804) CG9642 gene product [Drosophila; E=0.032 NP_867397.1 PMID: 2337600 PMID: 6380576 best DB hits: BLAST: gb:AAF04133.1; AF191033_1 (AF191033) citrate synthase; E=1e-152 embl:CAB66275.1; (AL136519) citrate synthase. [Streptomyces; E=1e-149 swissprot:Q10530; CISY_MYCTU CITRATE SYNTHASE 1 ----- pir:; E=1e-145 COG: Rv0896; COG0372 Citrate synthase; E=1e-146 PFAM: PF00285; Citrate synthase; E=1e-208 NP_867400.1 PMID: 10484179 PMID: 9878437 best DB hits: BLAST: ddbj:BAB06876.1; (AP001517) two-component response regulator; E=9e-39 gb:AAG43239.1; AF123314_2 (AF123314) response regulator; E=5e-38 gb:AAG09797.1; AF258346_2 (AF258346) response regulator RegX3; E=7e-38 COG: BH3157; COG0745 Response regulators consisting of a CheY-like; E=9e-40 phoB; COG0745 Response regulators consisting of a CheY-like receiver; E=5e-31 BH1580; COG0745 Response regulators consisting of a CheY-like; E=1e-30 PFAM: PF00072; Response regulator receiver doma; E=8.3e-31 PF00486; Transcriptional regulatory prote; E=2.9e-24 NP_867401.1 PMID: 1089067 PMID: 3520487 best DB hits: BLAST: pir:B75415; superoxide dismutase (EC 1.15.1.1) (Mn) DR1279; E=7e-82 ddbj:BAB05128.1; (AP001511) superoxide dismutase [Bacillus; E=3e-75 embl:CAA05291.1; (AJ002279) manganese superoxide dismutase; E=9e-75 COG: DR1279; COG0605 Superoxide dismutase; E=6e-83 PFAM: PF00081; Iron/manganese superoxide dismutases; E=2.4e-53 PF02777; Iron/manganese superoxide dismutases; E=5.3e-69 NP_867402.2 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis NP_867406.1 best DB hits: PFAM: PF01909; Nucleotidyltransferase domain; E=0.00053 NP_867407.1 PMID: 10413667 best DB hits: BLAST: gb:AAD24810.1; (AF003958) unknown [Acinetobacter sp. SUN]; E=0.004 swissprot:P05530; MCBG_ECOLI MCBG PROTEIN ----- pir: S00837; E=0.17 pir:I50531; transmembrane transporter - electric ray (Discopyge; E=0.26 PFAM: PF00805; Pentapeptide repeats (8 copies); E=3.4e-05 NP_867413.1 PMID: 6268937 best DB hits: BLAST: swissprot:P03835; YI41_ECOLI INSERTION ELEMENT IS4 HYPOTHETICAL; E=0.003 gb:AAC72261.1; (U91581) transposase [Lactococcus lactis; E=0.010 gb:AAF27554.1; (AF179847) transposase [Lactococcus; E=0.010 COG: yi41; COG3385 Predicted transposase; E=2e-04 PFAM: PF01609; Transposase (IS4 family); E=0.024 NP_867414.1 PMID: 7496528 best DB hits: BLAST: gb:AAA88919.1; (U13013) ORFB [Leptospira interrogans]; E=5e-47 gb:AAA88916.1; (U13012) ORFB [Leptospira interrogans]; E=2e-46 gb:AAC05649.1; (AF038931) probable transposase-related protein; E=8e-46 COG: tra5_g4; COG2801 transposase; E=2e-35 PFAM: PF00665; Integrase core domain; E=4.8e-40 NP_867415.1 PMID: 2824781 best DB hits: BLAST: gb:AAG58100.1; AE005527_3 (AE005527) unknown protein encoded by; E=0.002 gb:AAG53987.1; AF327445_1 (AF327445) transposase A; E=0.003 gb:AAF28119.1; AF153317_15 (AF153317) InsA [Shigella; E=0.007 COG: PA1937; COG2963 Transposase; E=0.004 PFAM: PF01381; Helix-turn-helix; E=0.53 PF01527; Transposase; E=6.1e-18 NP_867419.1 PMID: 1535622 best DB hits: BLAST: pir:F71205; hypothetical protein PH1912 - Pyrococcus horikoshii; E=3e-37 pir:F72315; conserved hypothetical protein - Thermotoga maritima; E=4e-37 pir:C75019; transport protein PAB1107 - Pyrococcus abyssi (strain; E=3e-36 COG: PH1912; COG1055 Na+/H+ antiporter NhaD and related arsenite; E=3e-38 arsB; COG1055 Na+/H+ antiporter NhaD and related arsenite permeases; E=6e-14 BH2999; COG1055 Na+/H+ antiporter NhaD and related arsenite; E=4e-13 NP_867422.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_867424.1 PMID: 9464382 best DB hits: BLAST: gb:AAC38151.1; (AF034088) lipase [Pseudomonas sp. B11-1]; E=4e-34 ddbj:BAA82510.1; (AB029896) esterase HDE [petroleum-degrading; E=3e-33 gb:AAB89533.1; (AE000985) carboxylesterase (estA) [Archaeoglobus; E=2e-30 COG: AF1716; COG0657 Acetyl esterase; E=2e-31 PFAM: PF00135; Carboxylesterase; E=0.75 PF00326; Prolyl oligopeptidase; E=0.72 PF00561; alpha/beta hydrolase fold; E=0.27 NP_867426.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate NP_867429.1 PMID: 1683466 PMID: 8550462 best DB hits: BLAST: swissprot:O84604; TOLB_CHLTR TOLB PROTEIN PRECURSOR ----- pir:; E=0.006 pir:F81653; tolB protein, probable TC0888 [imported] - Chlamydia; E=0.014 pir:E75551; probable acyl-peptide hydrolase - Deinococcus radiodurans; E=0.020 COG: CT599; COG0823 Periplasmic component of the Tol biopolymer transport; E=5e-04 DR0165; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; E=0.002 HI0382; COG0823 Periplasmic component of the Tol biopolymer transport; E=0.005 NP_867432.1 best DB hits: BLAST: gb:AAD45539.1; U70376_1 (U70376) InsA [Streptomyces netropsis]; E=5e-33 gb:AAG60893.1; AF322013_12 (AF322013) ID460 [Bradyrhizobium; E=8e-33 ddbj:BAA19966.1; (D63923) transposase [Acetobacter pasteurianus]; E=1e-26 NP_867434.1 PMID: 9639599 best DB hits: BLAST: gb:AAC05180.1; (U74652) nonspecific acid phosphatase precursor; E=1e-105 PFAM: PF00702; haloacid dehalogenase-like hydr; E=0.0014 NP_867437.1 PMID: 8843436 best DB hits: BLAST: gb:AAC82905.1; (AF016485) ORF H1434 [Halobacterium sp. NRC-1]; E=1e-29 embl:CAB61860.1; (AL133252) methyltransferase; E=5e-24 gb:AAF00618.1; AF166383_1 (AF166383) methyltransferase [Mus; E=3e-19 COG: slr0303; COG0500 SAM-dependent methyltransferases; E=1e-13 VC0083; COG2226 Methylase involved in ubiquinone/menaquinone; E=1e-07 VNG1280C; COG0500 SAM-dependent methyltransferases; E=0.001 PFAM: PF01209; ubiE/COQ5 methyltransferase f; E=0.026 NP_867438.1 PMID: 8905231 best DB hits: BLAST: pir:S76979; hypothetical protein - Synechocystis sp. (strain PCC; E=3e-56 embl:CAC24148.1; (AL512973) Hypothetical protein [Sulfolobus; E=5e-05 pir:C83581; heme d1 biosynthesis protein NirJ PA0511 [imported] -; E=0.016 COG: slr0304; COG0535 Predicted Fe-S oxidoreductases; E=3e-57 NP_867439.1 PMID: 7540906 NP_867440.1 PMID: 8016066 best DB hits: BLAST: pir:T36384; probable ATP-binding proteinase - Streptomyces; E=0.0 swissprot:P37571; CLPC_BACSU NEGATIVE REGULATOR OF GENETIC; E=0.0 ddbj:BAB03822.1; (AP001507) class III stress response-related; E=0.0 COG: BS_clpC; COG0542 ATPases with chaperone activity, ATP-binding domain; E=0.0 PFAM: PF02861; Clp amino terminal domain; E=7.5e-19 PF00004; ATPase associated with; E=1.6e-12 PF02151; UvrB/uvrC motif; E=2.3e-09 NP_867441.1 PMID: 3057324 best DB hits: BLAST: gb:AAG61067.1; AF322013_186 (AF322013) ID893 [Bradyrhizobium; E=7e-72 swissprot:P12679; PABB_KLEAE PARA-AMINOBENZOATE SYNTHASE COMPONENT; E=4e-59 gb:AAG56801.1; AE005404_4 (AE005404) p-aminobenzoate synthetase,; E=2e-57 COG: pabB; COG0147 Anthranilate/para-aminobenzoate synthases component I; E=4e-58 VC1303; COG0147 Anthranilate/para-aminobenzoate synthases component; E=4e-57 VNG0384G; COG0147 Anthranilate/para-aminobenzoate synthases; E=1e-45 PFAM: PF00425; chorismate binding enzyme; E=2.4e-103 NP_867442.1 Catalyzes the specific recognition and activation of amino acids during peptide synthesis NP_867443.1 PMID: 2570347 best DB hits: BLAST: gb:AAG32952.1; (AF032114) unknown [Methylobacterium extorquens]; E=3e-16 swissprot:Q58037; Y620_METJA HYPOTHETICAL PROTEIN MJ0620 -----; E=5e-15 pir:T43945; ribosomal protein S6 modification protein [imported] -; E=3e-13 COG: MJ0620; COG0189 Glutathione synthase/Ribosomal protein S6; E=5e-16 rimK; COG0189 Glutathione synthase/Ribosomal protein S6 modification; E=1e-11 VC2281; COG0189 Glutathione synthase/Ribosomal protein S6; E=3e-11 PFAM: PF02222; ATP-grasp domain; E=7.4e-06 NP_867444.1 catalyzes the reversible formation of methenyl-H(4)methanopterin from N(5)-formyl-H(4)methanopterin NP_867445.1 PMID: 99209008 best DB hits: BLAST: ddbj:BAB04667.1; (AP001510) bacterioferritin comigratory protein; E=0.003 pir:S74867; hypothetical protein sll1159 - Synechocystis sp. (strain; E=0.010 pir:G81021; thioredoxin, probable NMB1958 [imported] - Neisseria; E=0.029 COG: BH0948; COG1225 Peroxiredoxins; E=3e-04 NMB1958; COG0526 Thiol-disulfide isomerase and thioredoxins; E=0.003 PFAM: PF00578; AhpC/TSA family; E=0.21 NP_867446.1 best DB hits: BLAST: pir:T13482; hypothetical protein 34F3.5 - fruit fly (Drosophila; E=0.007 swissprot:P41949; YLK1_CAEEL HYPOTHETICAL 48.2 KD PROTEIN D1044.1; E=0.060 pir:T22412; hypothetical protein F49C12.7 - Caenorhabditis elegans; E=0.18 NP_867447.1 PMID: 8020961 best DB hits: BLAST: gb:AAF30402.1; AF109924_1 (AF109924) sulfatase 1 precursor [Helix; E=1e-39 ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=2e-39 embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=3e-39 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=1e-33 PAB0793; COG2194 Predicted membrane-associated, metal-dependent; E=8e-11 Rv0296c; COG3119 Arylsulfatase A and related enzymes; E=9e-11 PFAM: PF00884; Sulfatase; E=1.9e-44 NP_867449.1 PMID: 10192928 PMID: 3029683 best DB hits: BLAST: ddbj:BAB04367.1; (AP001509) ATP-dependent DNA helicase [Bacillus; E=1e-121 swissprot:Q53727; PCRA_STAAU ATP-DEPENDENT DNA HELICASE PCRA; E=1e-115 swissprot:P56255; PCRA_BACST ATP-DEPENDENT DNA HELICASE PCRA; E=1e-114 COG: BH0648; COG0210 Superfamily I DNA and RNA helicases; E=1e-122 PFAM: PF00580; UvrD/REP helicase; E=5.6e-173 NP_867450.1 involved in the peptidyltransferase reaction during translation NP_867456.1 PMID: 7489918 best DB hits: BLAST: ddbj:BAA76622.1; (AB019194) RpoT [Mycobacterium leprae]; E=2e-26 ddbj:BAA76621.1; (AB019193) RpoT [Mycobacterium leprae]; E=2e-26 pir:S61292; transcription initiation factor sigma mysA -; E=4e-26 COG: Rv2703; COG0568 DNA-directed RNA polymerase sigma subunits; E=1e-26 PFAM: PF00140; Sigma-70 factor; E=7.7e-20 NP_867457.1 PMID: 9736747 best DB hits: BLAST: pir:E83642; choline sulfatase PA0031 [imported] - Pseudomonas; E=2e-25 gb:AAF72520.1; AF248951_1 (AF248951) mucin-desulfating sulfatase; E=3e-24 swissprot:P31447; YIDJ_ECOLI SULFATASE YIDJ -----; E=3e-24 COG: PA0031; COG3119 Arylsulfatase A and related enzymes; E=2e-26 PAB0793; COG2194 Predicted membrane-associated, metal-dependent; E=3e-08 ydeN; COG3119 Arylsulfatase A and related enzymes; E=2e-07 PFAM: PF00884; Sulfatase; E=3.3e-13 NP_867468.1 best DB hits: BLAST: pir:F75057; hypothetical protein PAB2381 - Pyrococcus abyssi (strain; E=2e-13 pir:E71174; hypothetical protein PH0593 - Pyrococcus horikoshii; E=2e-06 pir:F72219; conserved hypothetical protein - Thermotoga maritima; E=1e-04 COG: PAB2381; COG0697 Predicted permeases; E=2e-14 PFAM: PF00892; Integral membrane protein DUF6; E=5.2e-12 NP_867472.1 PMID: 7751271 best DB hits: BLAST: swissprot:P50199; GNO_GLUOX GLUCONATE 5-DEHYDROGENASE; E=9e-23 swissprot:P39345; IDNO_ECOLI GLUCONATE 5-DEHYDROGENASE; E=4e-22 embl:CAC11881.1; (AL445065) glucose 1-dehydrogenase related; E=3e-21 COG: idnO; COG1028 Dehydrogenases with different specificities (related; E=4e-23 DRA0200; COG1028 Dehydrogenases with different specificities; E=5e-22 BH0938; COG1028 Dehydrogenases with different specificities (related; E=7e-20 PFAM: PF00106; short chain dehydrogenase; E=1e-43 NP_867473.1 PMID: 8918804 best DB hits: BLAST: embl:CAA67214.1; (X98625) sialic acid-specific 9-O-acetylesterase; E=5e-31 gb:AAB07813.1; (U40408) sialic-acid O-acetylesterase [Mus; E=9e-31 gb:AAD55976.1; (AF156856) cytosolic sialic acid; E=5e-28 NP_867474.1 PMID: 8552027 best DB hits: BLAST: swissprot:O86566; GCSH_STRCO PROBABLE GLYCINE CLEAVAGE SYSTEM H; E=1e-15 swissprot:Q50607; GCSH_MYCTU PROBABLE GLYCINE CLEAVAGE SYSTEM H; E=6e-12 swissprot:P25855; GCSH_ARATH GLYCINE CLEAVAGE SYSTEM H PROTEIN 1,; E=7e-12 COG: Rv1826; COG0509 Glycine cleavage system H protein (lipoate-binding); E=6e-13 VNG1605G; COG0509 Glycine cleavage system H protein; E=1e-12 gcvH; COG0509 Glycine cleavage system H protein (lipoate-binding); E=2e-12 PFAM: PF01597; Glycine cleavage H-protein; E=8.4e-12 NP_867475.1 PMID: 9202461 best DB hits: BLAST: ddbj:BAA19714.1; (D88802) H. influenzae hypothetical protein; E=5e-27 swissprot:O05514; THIL_BACSU THIAMINE-MONOPHOSPHATE KINASE; E=5e-27 ddbj:BAB04263.1; (AP001508) thiamin-monophosphate kinase; E=2e-26 COG: BS_ydiA; COG0611 Thiamine monophosphate kinase; E=4e-28 MTH1864; COG2144 Selenophosphate synthetase-related proteins; E=2e-06 AF0733; COG0611 Thiamine monophosphate kinase; E=3e-06 PFAM: PF00586; AIR synthase related protein, N-; E=5e-06 PF02769; AIR synthase related protein, C-; E=6.4e-05 NP_867477.1 PMID: 9634230 best DB hits: BLAST: swissprot:Q10801; DIPZ_MYCTU DIPZ PROTEIN ----- pir: E70923; E=2e-18 embl:CAB58305.1; (AL121854) hypothetical protein SCJ33.06c; E=2e-11 gb:AAF45468.2; (AE002760) CG12547 gene product [Drosophila; E=2e-09 COG: Rv2874_2; COG0526 Thiol-disulfide isomerase and thioredoxins; E=2e-19 Rv2521; COG1225 Peroxiredoxins; E=0.007 DR2242; COG0450 Thiol - alkyl hydroperoxide reductases; E=0.009 NP_867478.1 PMID: 9665876 best DB hits: BLAST: pir:D71379; probable sensory transduction histidine kinase -; E=5e-23 embl:CAB64771.1; (AJ007794) kin1 [Bacillus cereus] -----; E=1e-21 pir:B69863; two-component sensor histidine kinase homolog ykrQ -; E=2e-21 COG: BS_ykrQ_3; COG0642 Sensory transduction histidine kinases; E=2e-22 PFAM: PF00512; His Kinase A (phosphoacceptor) doma; E=6.1e-12 PF02518; Histidine kinase-, DNA gyrase B-, p; E=8.6e-32 NP_867479.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate NP_867480.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis NP_867481.1 PMID: 8188604 PMID: 8858155 best DB hits: BLAST: pir:I40872; transcription initiation factor sigma 70 - Chlamydophila; E=2e-74 swissprot:P18333; RPSD_CHLTR RNA POLYMERASE SIGMA FACTOR RPOD; E=3e-74 swissprot:Q9Z7F0; RPSD_CHLPN RNA POLYMERASE SIGMA FACTOR RPOD; E=7e-74 COG: CT615; COG0568 DNA-directed RNA polymerase sigma subunits; E=3e-75 PFAM: PF00140; Sigma-70 factor; E=2.8e-111 NP_867483.1 PMID: 10984043 best DB hits: BLAST: pir:B83021; glutamate-ammonia-ligase adenylyltransferase PA5014; E=1e-45 swissprot:P44419; GLNE_HAEIN GLUTAMATE-AMMONIA-LIGASE; E=7e-44 swissprot:P30870; GLNE_ECOLI GLUTAMATE-AMMONIA-LIGASE; E=7e-43 COG: PA5014; COG1391 Glutamine synthetase adenylyltransferase; E=1e-46 NP_867484.1 PMID: 9384377 best DB hits: BLAST: pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=3e-35 ddbj:BAB06223.1; (AP001515) serinethreonine protein kinase; E=1e-32 embl:CAA10713.1; (AJ132604) hypothetical protein [Lactococcus; E=3e-32 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=2e-36 PFAM: PF00069; Protein kinase domain; E=1.6e-49 PF00480; ROK family; E=0.13 NP_867485.1 PMID: 1522882 best DB hits: BLAST: gb:AAK03896.1; (AE006218) Pbg [Pasteurella multocida]; E=4e-49 swissprot:Q60169; HEM3_PSEAE PORPHOBILINOGEN DEAMINASE (PBG); E=3e-46 pdb:1YPN; Reduced Form Hydroxymethylbilane Synthase (K59q; E=2e-44 COG: PA5260; COG0181 Porphobilinogen deaminase; E=3e-47 PFAM: PF00126; Bacterial regulatory helix-tur; E=0.24 PF01379; Porphobilinogen deaminase; E=1.4e-105 NP_867486.1 PMID: 7763385 PMID: 1672867 best DB hits: BLAST: pir:E81978; probable glutamate-1-semialdehyde 2,1-aminomutase (EC; E=1e-116 swissprot:Q40147; GSA_LYCES GLUTAMATE-1-SEMIALDEHYDE; E=1e-115 swissprot:Q06741; GSA_XANCH GLUTAMATE-1-SEMIALDEHYDE; E=1e-115 COG: BS_hemL; COG0001 Glutamate-1-semialdehyde aminotransferase; E=1e-116 PFAM: PF00202; Aminotransferase class-III; E=1.8e-125 NP_867490.1 PMID: 2555671 best DB hits: BLAST: pir:S66080; UDP-N-acetylglucosamine pyrophosphorylase gcaD -; E=1e-44 gb:AAK05981.1; AE006418_1 (AE006418) UDP-N-acetylglucosamine; E=1e-43 ddbj:BAB03784.1; (AP001507) UDP-N-acetylglucosamine; E=2e-43 COG: BS_gcaD; COG1207 N-acetylglucosamine-1-phosphate uridyltransferase; E=1e-45 MTH1589; COG1208 Nucleoside-diphosphate-sugar pyrophosphorylases; E=1e-10 PFAM: PF01128; Uncharacterized protein famil; E=2.4e-06 PF00483; Nucleotidyl transferase; E=1.7e-08 NP_867491.1 PMID: 8918235 best DB hits: BLAST: pir:S71262; ribose-phosphate pyrophosphokinase (EC 2.7.6.1) II -; E=2e-82 swissprot:Q42583; KPR2_ARATH RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 2; E=2e-82 embl:CAB43599.1; (AJ006940) phosphoribosyl pyrophosphate synthase; E=3e-82 COG: Cj0918c; COG0462 Phosphoribosylpyrophosphate synthetase; E=6e-78 PFAM: PF00156; Phosphoribosyl transferase domai; E=2.1e-25 NP_867492.1 PMID: 10464185 best DB hits: BLAST: gb:AAC33460.2; (AF067140) exopolysaccharide polymerization; E=1e-06 ddbj:BAB07387.1; (AP001519) capsular polysaccharide biosynthesis; E=1e-06 embl:CAC06097.1; (AJ010494) ParA protein [Listeria monocytogenes]; E=3e-06 COG: BH3668; COG0489 ATPases involved in chromosome partitioning; E=1e-07 BH3027; COG2894 Septum formation inhibitor-activating ATPase; E=2e-06 BS_ywqD; COG0489 ATPases involved in chromosome partitioning; E=2e-06 PFAM: PF00991; ParA family ATPase; E=0.49 NP_867493.1 PMID: 11842247 NP_867496.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 PF01856; Outer membrane protein; E=0.79 NP_867498.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_867500.1 PMID: 8759848 best DB hits: BLAST: swissprot:Q54728; YJHC_STRPN HYPOTHETICAL PROTEIN IN NANB 3'REGION; E=1e-04 pir:A83617; probable oxidoreductase PA0237 [imported] - Pseudomonas; E=0.033 pir:S56505; hypothetical 41.9K protein (leuX-fecE intergenic region); E=0.094 COG: PA0237; COG0673 Predicted dehydrogenases and related proteins; E=0.003 PFAM: PF01408; Oxidoreductase, NAD-bindi; E=2.6e-05 NP_867501.1 PMID: 10192928 best DB hits: BLAST: embl:CAC24034.1; (AL512980) ORF-c34_017 [Sulfolobus solfataricus]; E=2e-10 ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=2e-10 gb:AAD51832.1; AF175299_7 (AF175299) ThuB [Sinorhizobium meliloti]; E=4e-10 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=2e-11 PFAM: PF01408; Oxidoreductase, NAD-bin; E=1.4e-20 NP_867508.1 PMID: 7910580 best DB hits: BLAST: embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=8e-29 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=8e-29 swissprot:P50428; ARSA_MOUSE ARYLSULFATASE A PRECURSOR (ASA); E=1e-27 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=2e-27 BS_yfnI; COG1368 Phosphoglycerol transferase and related proteins,; E=0.004 PFAM: PF00884; Sulfatase; E=2e-60 NP_867509.1 PMID: 8098033 best DB hits: BLAST: swissprot:P29679; TESA_ECOLI ACYL-COA THIOESTERASE I PRECURSOR; E=0.32 gb:AAB40248.1; (U82664) acyl-coA thioesterase I precursor; E=0.32 gb:AAG54851.1; AE005230_11 (AE005230) acyl-CoA thioesterase I; E=0.32 PFAM: PF01236; Sodium:galactoside symporter; E=0.17 NP_867511.1 PMID: 10783239 best DB hits: BLAST: pir:E71676; hypothetical protein RP699 - Rickettsia prowazekii; E=2e-19 pir:C83271; conserved hypothetical protein PA2986 [imported] -; E=1e-17 pir:E83271; conserved hypothetical protein PA2988 [imported] -; E=4e-16 COG: RP699; COG0577 Predicted permease; E=2e-20 PFAM: PF02687; Predicted permease; E=3.5e-39 NP_867512.1 PMID: 10783239 best DB hits: BLAST: gb:AAG34709.1; AF320001_2 (AF320001) ATP binding protein; E=5e-49 swissprot:P45247; LOLD_HAEIN LIPOPROTEIN RELEASING SYSTEM; E=3e-45 gb:AAG18646.1; (AE004970) amino acid ABC transporter, ATP-binding; E=3e-45 COG: HI1549; COG1136 ABC-type (unclassified) transport system, ATPase; E=3e-46 PFAM: PF00005; ABC transporter; E=3.4e-58 NP_867514.1 PMID: 8063110 best DB hits: BLAST: swissprot:Q57142; C554_NITEU CYTOCHROME C-554 PRECURSOR (C554); E=1e-05 pdb:1FT5; A Chain A, Crystal Structure Of The Oxidized State Of; E=1e-05 NP_867516.1 PMID: 10681551 best DB hits: BLAST: embl:CAB76379.1; (Y13219) hemocyanin type 1 [Haliotis; E=0.20 embl:CAC20588.1; (AJ252741) hemocyanin [Haliotis tuberculata]; E=0.20 NP_867517.1 PMID: 1379743 best DB hits: BLAST: pir:S74927; lipophilic protein lim - Synechocystis sp. (strain PCC; E=3e-20 pir:B69721; teichoic acid linkage unit synthesis tagO - Bacillus; E=8e-19 pir:A55856; llm protein - Staphylococcus aureus ----- ddbj:; E=3e-18 COG: sll0648; COG0472 UDP-N-acetylmuramyl pentapeptide; E=2e-21 PFAM: PF00953; Glycosyl transferase; E=1.3e-27 NP_867528.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_867530.1 best DB hits: BLAST: embl:CAB98267.1; (AJ276171) ASPIC [Homo sapiens]; E=1e-07 embl:CAB98268.1; (AJ276171) ASPIC [Homo sapiens] ----- embl:; E=1e-07 embl:CAB98269.1; (AJ276171) ASPIC [Homo sapiens]; E=1e-07 COG: aq_854; COG0457 TPR-repeat-containing proteins; E=0.004 PFAM: PF01839; FG-GAP repeat; E=0.037 NP_867534.1 PMID: 8594326 best DB hits: BLAST: pir:S57418; fimbrial protein MS11-N556 precursor - Neisseria; E=0.009 ddbj:BAB06546.1; (AP001516) exogenous DNA-binding protein; E=0.014 gb:AAD05177.1; (AF110185) general secretory pathway protein G; E=0.014 COG: DR0548; COG2165 General secretory pathway proteins G and H and; E=0.010 PFAM: PF00114; Pilin (bacterial filament); E=0.16 NP_867535.1 best DB hits: PFAM: PF02369; Bacterial Ig-like domain (group 1); E=0.83 NP_867538.1 PMID: 7551585 best DB hits: BLAST: swissprot:O04937; DHEA_NICPL GLUTAMATE DEHYDROGENASE A (GDH A); E=1e-115 swissprot:Q43314; DHE1_ARATH GLUTAMATE DEHYDROGENASE 1 (GDH 1); E=1e-115 pir:T04342; glutamate dehydrogenase (EC 1.4.1.2) - maize -----; E=1e-114 COG: TM1015; COG0334 Glutamate dehydrogenase/leucine dehydrogenase; E=1e-99 PFAM: PF02812; Glu/Leu/Phe/Val dehydrogenase; E=3.1e-56 PF00044; Glyceraldehyde 3-phosphate de; E=0.76 PF02254; KTN NAD-binding domain; E=0.33 NP_867539.1 PMID: 10930739 best DB hits: BLAST: gb:AAG01804.1; AF276772_3 (AF276772) O-acetylserine sulfhydrylase; E=3e-83 swissprot:P95230; CYSK_MYCTU CYSTEINE SYNTHASE A (O-ACETYLSERINE; E=1e-82 pir:H81161; probable cysteine synthase (EC 4.2.99.8) NMA0974; E=1e-81 COG: Rv2334; COG0031 Cysteine synthase; E=1e-83 PFAM: PF00291; Pyridoxal-phosphate dependent enzym; E=1.3e-119 NP_867540.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin NP_867541.1 PMID: 11401501 best DB hits: BLAST: embl:CAC08296.1; (AL392148) oxidoreductase [Streptomyces; E=1e-165 embl:CAB60189.1; (AL132824) oxidoreductase alpha-subunit; E=1e-164 pir:F70864; probable oxidoreductase alpha subunit - Mycobacterium; E=1e-160 COG: Rv2455c_2; COG0674 Pyruvate:ferredoxin oxidoreductase and related; E=1e-106 Rv2455c_1; COG1014 Pyruvate:ferredoxin oxidoreductase and related; E=2e-46 BH2374_2; COG0674 Pyruvate:ferredoxin oxidoreductase and related; E=2e-40 PFAM: PF01855; Pyruvate flavodoxin/ferredoxin oxido; E=8.6e-64 NP_867545.1 PMID: 9523018 best DB hits: BLAST: pir:C71320; probable adenylate cyclase - syphilis spirochete -----; E=8e-40 pir:F70563; probable transmembrane protein - Mycobacterium; E=2e-35 embl:CAA18817.1; (AL023093) membrane protein; E=4e-35 COG: TP0485; COG2114 Adenylate cyclase, family 3 (some proteins contain; E=8e-41 slr1991_2; COG2114 Adenylate cyclase, family 3 (some proteins; E=9e-14 PA3217; COG2114 Adenylate cyclase, family 3 (some proteins contain; E=4e-12 PFAM: PF00672; HAMP domain; E=8.7e-11 PF00211; Adenylate and Guanylate cyclase; E=7e-26 NP_867546.1 PMID: 11953381 NP_867547.1 PMID: 8071224 best DB hits: BLAST: ddbj:BAB05083.1; (AP001511) diacylglycerol kinase [Bacillus; E=3e-05 gb:AAA70044.1; (U29177) diacylglycerol kinase [Bacillus subtilis]; E=9e-05 swissprot:P19638; KDGL_BACSU DIACYLGLYCEROL KINASE (DAGK); E=2e-04 COG: BH1364; COG0818 Diacylglycerol kinase; E=3e-06 PFAM: PF01219; Prokaryotic diacylglycerol kinase; E=1.1e-19 NP_867549.1 PMID: 7910580 best DB hits: BLAST: embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=1e-46 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=1e-46 pdb:1E2S; P Chain P, Crystal Structure Of An Arylsulfatase A; E=1e-45 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=4e-32 BS_yvgJ; COG1368 Phosphoglycerol transferase and related proteins,; E=0.006 PFAM: PF00884; Sulfatase; E=1.5e-63 NP_867550.1 PMID: 11016950 best DB hits: BLAST: gb:AAG19686.1; (AE005056) Vng1353c [Halobacterium sp. NRC-1]; E=0.009 gb:AAG19687.1; (AE005056) Vng1355h [Halobacterium sp. NRC-1]; E=0.034 ddbj:BAB05440.1; (AP001512) BH1721~unknown conserved protein; E=0.049 COG: VNG1355H; COG3402 Uncharacterized protein; E=0.003 NP_867551.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration NP_867552.1 PMID: 7889934 best DB hits: BLAST: swissprot:O05843; RPOE_MYCTU RNA POLYMERASE SIGMA-E FACTOR; E=6e-07 gb:AAD41810.1; AF144091_4 (AF144091) sigma factor SigH; E=5e-06 pir:T42015; probable RNA polymerase sigma factor - Streptomyces; E=1e-05 COG: Rv3223c; COG1595 DNA-directed RNA polymerase specialized sigma; E=5e-08 PFAM: PF00140; Sigma-70 factor; E=0.012 NP_867553.1 best DB hits: BLAST: pir:T36872; hypothetical protein SCI51.09c - Streptomyces coelicolor; E=4e-08 swissprot:P35155; YPUH_BACSU HYPOTHETICAL 22.0 KD PROTEIN IN; E=3e-07 pir:D71320; conserved hypothetical protein TP0458 - syphilis; E=5e-06 COG: BS_ypuH; COG1386 Predicted transcriptional regulator containing the; E=2e-08 NP_867554.1 PMID: 10360571 best DB hits: BLAST: pir:G72218; conserved hypothetical protein - Thermotoga maritima; E=5e-45 pir:T02275; hypothetical protein T13D8.12 - Arabidopsis thaliana; E=3e-44 pir:H70337; conserved hypothetical protein aq_416 - Aquifex aeolicus; E=3e-43 COG: TM1715; COG0820 Predicted Fe-S oxidoreductase; E=4e-46 NP_867555.1 PMID: 7574579 best DB hits: BLAST: swissprot:Q44091; SNDH_ACELI L-SORBOSONE DEHYDROGENASE (SNDH); E=0.001 PFAM: PF00034; Cytochrome c; E=0.11 NP_867556.1 PMID: 10984043 best DB hits: BLAST: pir:F83313; conserved hypothetical protein PA2651 [imported] -; E=7e-13 pir:C82300; conserved hypothetical protein VC0624 [imported] -; E=1e-12 swissprot:O83564; Y553_TREPA HYPOTHETICAL PROTEIN TP0553 -----; E=1e-09 COG: PA2651; COG0628 Predicted permease; E=7e-14 PFAM: PF01594; Domain of unknown function DU; E=1.1e-06 PF00694; Aconitase C-terminal domain; E=0.81 PF01594; Domain of unknown function DU; E=2.4e-27 NP_867557.1 PMID: 8813677 best DB hits: BLAST: pir:T30841; serine-repeat antigen 4 - Plasmodium vivax ----- gb:; E=0.030 swissprot:Q06852; SLP1_CLOTM CELL SURFACE GLYCOPROTEIN 1 PRECURSOR; E=0.37 NP_867558.1 PMID: 12024217 best DB hits: PFAM: PF01319; Cholesterol oxidase; E=0.56 PF00884; Sulfatase; E=0.052 NP_867560.1 PMID: 10339832 PMID: 2060788 best DB hits: BLAST: ddbj:BAB05779.1; (AP001514) BH2060~unknown [Bacillus halodurans]; E=5e-05 gb:AAD31610.1; (AF079807) tellurite resistance protein TehB; E=1e-04 swissprot:P45134; TEHB_HAEIN TELLURITE RESISTANCE PROTEIN TEHB; E=2e-04 COG: HI1275; COG0500 SAM-dependent methyltransferases; E=2e-05 VNG1117C; COG2520 Predicted methyltransferase; E=0.001 NMB1617; COG0500 SAM-dependent methyltransferases; E=0.002 NP_867561.1 PMID: 9603950 best DB hits: BLAST: gb:AAB31210.2; (S73498) AgX-1 antigen [Homo sapiens]; E=9e-64 swissprot:Q16222; UAP1_HUMAN UDP-N-ACETYLHEXOSAMINE; E=9e-64 gb:AAF52387.1; (AE003613) BcDNA:LD24639 gene product [Drosophila; E=1e-63 PFAM: PF01128; Uncharacterized protein family UPF00; E=0.091 PF01704; UTP--glucose-1-phosphate uridylyltra; E=3.5e-37 NP_867562.1 PMID: 10984043 best DB hits: BLAST: pir:A83071; hypothetical protein PA4591 [imported] - Pseudomonas; E=2e-04 pir:S77541; hypothetical protein slr1207 - Synechocystis sp. (strain; E=4e-04 pir:D70391; hypothetical protein aq_1060 - Aquifex aeolicus -----; E=0.003 COG: PA4591; COG0845 Membrane-fusion protein; E=2e-05 aq_1060; COG1566 Multidrug resistance efflux pump; E=3e-04 PA3402; COG0845 Membrane-fusion protein; E=8e-04 PFAM: PF00358; phosphoenolpyruvate-dependent sug; E=0.72 NP_867563.1 PMID: 10952301 best DB hits: BLAST: swissprot:Q9WYI7; Y352_THEMA HYPOTHETICAL ABC TRANSPORTER; E=4e-61 pir:A82184; ABC transporter ATP-binding protein VC1568 [imported] -; E=4e-59 ddbj:BAB07392.1; (AP001519) ABC transporter (ATP-binding protein); E=2e-57 COG: TM0352; COG1136 ABC-type (unclassified) transport system, ATPase; E=4e-62 PFAM: PF00485; Phosphoribulokinase / Uridine; E=0.53 PF00005; ABC transporter; E=3.1e-55 NP_867564.1 PMID: 10984043 best DB hits: BLAST: pir:S76946; hypothetical protein - Synechocystis sp. (strain PCC; E=2e-34 swissprot:O31712; YKNZ_BACSU HYPOTHETICAL 42.1 KDA PROTEIN IN; E=9e-33 pir:G72385; conserved hypothetical protein - Thermotoga maritima; E=4e-30 COG: slr0594; COG0577 Predicted permease; E=2e-35 PFAM: PF02780; Transketolase, C-terminal dom; E=0.67 PF02687; Predicted permease; E=1.8e-34 NP_867566.1 PMID: 10192928 best DB hits: BLAST: ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=1e-07 embl:CAC24034.1; (AL512980) ORF-c34_017 [Sulfolobus solfataricus]; E=2e-07 swissprot:P40332; YISS_BACSU HYPOTHETICAL 37.5 KD PROTEIN IN; E=5e-07 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=1e-08 PFAM: PF01113; Dihydrodipicolinate reductase; E=0.39 PF01408; Oxidoreductase, NAD-bindi; E=1.3e-23 NP_867569.1 best DB hits: PFAM: PF00429; ENV polyprotein (coat polypro; E=0.67 NP_867570.1 PMID: 9006060 PMID: 2005873 best DB hits: BLAST: swissprot:P94498; CYH1_BACSU PHOSPHOADENOSINE PHOSPHOSULFATE; E=2e-48 swissprot:O06737; CYH2_BACSU PROBABLE PHOSPHOADENOSINE; E=4e-48 ddbj:BAB05205.1; (AP001512) 3'-phosphoadenosine 5'-phosphosulfate; E=3e-47 COG: BS_cysH; COG0175 3'-phosphoadenosine 5'-phosphosulfate; E=2e-49 cysH; COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase; E=1e-17 BU426; COG0175 3'-phosphoadenosine 5'-phosphosulfate; E=2e-13 PFAM: PF01507; Phosphoadenosine phosphosulfate r; E=4.8e-62 NP_867571.1 PMID: 8905231 best DB hits: BLAST: pir:S75800; hypothetical protein slr0846 - Synechocystis sp.; E=7e-10 swissprot:Q55433; Y846_SYNY3 HYPOTHETICAL 16.4 KD PROTEIN; E=7e-10 swissprot:Q10613; YC87_MYCTU HYPOTHETICAL PROTEIN RV1287 PRECURSOR; E=4e-07 COG: slr0846; COG1959 Predicted transcriptional regulator; E=7e-11 PFAM: PF02082; Uncharacterized protein family UPF00; E=9e-19 NP_867573.1 PMID: 2498283 PMID: 814121 best DB hits: BLAST: pir:D72335; flagellin - Thermotoga maritima (strain MSB8) -----; E=2e-18 gb:AAC01555.1; (AF007122) flagellin [Vibrio cholerae]; E=1e-17 pir:C82112; flagellin FlaE VC2144 [imported] - Vibrio cholerae; E=1e-17 COG: TM0758; COG1344 Flagellin and related hook-associated proteins; E=2e-19 PFAM: PF00669; Bacterial flagellin N-terminus; E=1.1e-25 PF00700; Bacterial flagellin C-terminus; E=7.2e-18 NP_867575.1 PMID: 10567266 best DB hits: BLAST: pir:C75407; excinuclease ABC chain C - Deinococcus radiodurans; E=5e-04 ddbj:BAA85760.1; (AB033748) UVR-C protein [Deinococcus; E=0.003 swissprot:P73580; UVRC_SYNY3 EXCINUCLEASE ABC SUBUNIT C -----; E=0.008 COG: DR1354; COG0322 Nuclease subunit of the excinuclease complex; E=4e-05 PFAM: PF01541; Endo/excinuclease amino termin; E=2.9e-05 NP_867577.1 PMID: 10984043 best DB hits: BLAST: pir:E70082; glucose 1-dehydrogenase homolog yxnA - Bacillus subtilis; E=2e-21 gb:AAG18928.1; (AE004994) oxidoreductase; YusZ3 [Halobacterium; E=1e-19 pir:F83229; probable short chain dehydrogenase PA3330 [imported] -; E=1e-18 COG: BS_yxnA; COG1028 Dehydrogenases with different specificities; E=2e-22 PA3330; COG1028 Dehydrogenases with different specificities (related; E=1e-19 VCA1057; COG0300 Short-chain dehydrogenases of various substrate; E=7e-19 PFAM: PF00106; short chain dehydrogenase; E=1.2e-38 NP_867578.1 PMID: 8248183 best DB hits: BLAST: swissprot:P25519; HFLX_ECOLI GTP-BINDING PROTEIN HFLX -----; E=2e-82 gb:AAG59369.1; AE005650_8 (AE005650) GTP - binding subunit of; E=2e-81 pir:D82334; GTP-binding protein HflX VC0348 [imported] - Vibrio; E=5e-78 COG: hflX; COG2262 GTPases; E=2e-83 slr1090; COG0536 Predicted GTPase; E=2e-06 PFAM: PF00005; ABC transporter; E=0.53 PF02421; Ferrous iron transport protein B; E=0.00079 PF01926; GTPase of unknown function; E=0.011 NP_867579.1 PMID: 6330676 best DB hits: BLAST: swissprot:P71689; UVRC_MYCTU EXCINUCLEASE ABC SUBUNIT C -----; E=4e-44 pir:G81845; excinuclease ABC subunit C NMA1540 [imported] -; E=6e-39 ddbj:BAB06816.1; (AP001517) excinuclease ABC (subunit C); E=2e-38 COG: Rv1420; COG0322 Nuclease subunit of the excinuclease complex; E=3e-45 PFAM: PF01541; Endo/excinuclease amino terminal; E=2.1e-18 PF02151; UvrB/uvrC motif; E=8.4e-11 NP_867580.1 PMID: 10731132 best DB hits: BLAST: gb:AAF54635.1; (AE003691) CG5270 gene product [Drosophila; E=0.17 PFAM: PF02058; Guanylin precursor; E=0.1 NP_867584.1 best DB hits: BLAST: pir:H70988; hypothetical protein Rv1767 - Mycobacterium; E=0.065 pir:C69225; conserved hypothetical protein MTH935 -; E=0.14 COG: Rv1767; COG0599 Uncharacterized ACR, homolog of; E=0.006 PFAM: PF02627; Carboxymuconolactone decarboxylase; E=1e-08 NP_867585.1 PMID: 7665501 best DB hits: BLAST: gb:AAK00606.1; AF221100_3 (AF221100) uroporphyrinogen III; E=1e-89 swissprot:Q59294; HEM4_CLOJO PORPHYRIN BIOSYNTHESIS PROTEIN HEMD; E=1e-64 gb:AAC18588.1; (AF064061) uroporphyrinogen-III; E=3e-63 COG: NMB1156_2; COG0007 Uroporphyrinogen-III methylase; E=2e-44 sll0166_2; COG1587 Uroporphyrinogen-III synthase; E=7e-30 PFAM: PF00590; Tetrapyrrole (Corrin/Porphyrin); E=1.2e-63 PF02602; Uroporphyrinogen-III synthase H; E=7.1e-43 NP_867586.1 PMID: 6267039 PMID: 786731 best DB hits: BLAST: pir:F82559; 30S ribosomal protein S20 XF2421 [imported] - Xylella; E=3e-06 pir:A70452; ribosomal protein S20 - Aquifex aeolicus ----- gb:; E=8e-06 pir:E83074; 30S ribosomal protein S20 PA4563 [imported] -; E=1e-05 COG: XF2421; COG0268 Ribosomal protein S20; E=4e-07 PFAM: PF01649; Ribosomal protein S20; E=5.2e-32 NP_867587.1 PMID: 8590279 best DB hits: BLAST: swissprot:Q55909; Y305_SYNY3 HYPOTHETICAL 22.2 KD PROTEIN SLR0305; E=0.003 embl:CAB61866.1; (AL133252) integral membrane protein; E=0.028 gb:AAF69152.1; AC007915_4 (AC007915) F27F5.5 [Arabidopsis; E=0.85 COG: slr0305; COG0398 Uncharacterized ACR; E=3e-04 NP_867590.1 PMID: 10984043 best DB hits: BLAST: pir:B83295; hypothetical protein PA2794 [imported] - Pseudomonas; E=0.056 gb:AAF60322.1; (AF236853) sialidase [Pseudomonas aeruginosa]; E=0.16 PFAM: PF02012; BNR repeat; E=0.15 NP_867592.1 PMID: 8244995 best DB hits: BLAST: pir:A49551; filamin, Muller cell - chicken ----- gb:; E=0.77 NP_867606.1 best DB hits: BLAST: gb:AAD42851.1; AF159689_3 (AF159689) serinethreonine kinase PKN3; E=3e-40 swissprot:P71584; PKNB_MYCTU SERINETHREONINE-PROTEIN; E=5e-38 swissprot:P54744; PKNB_MYCLE SERINETHREONINE-PROTEIN; E=2e-35 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=5e-39 PFAM: PF00069; Protein kinase domain; E=2.1e-34 NP_867607.1 PMID: 10984043 best DB hits: BLAST: pir:A83099; hypothetical protein PA4371 [imported] - Pseudomonas; E=3e-09 pir:A82220; hypothetical protein VC1265 [imported] - Vibrio cholerae; E=4e-08 pir:E81378; cytochrome-c peroxidase (EC 1.11.1.5) Cj0358; E=0.23 NP_867611.1 PMID: 3093467 best DB hits: BLAST: swissprot:P20429; RPOA_BACSU DNA-DIRECTED RNA POLYMERASE ALPHA; E=1e-07 gb:AAA81287.1; (U30821) alpha subunit of RNA polymerase; E=5e-07 swissprot:O50634; RPOA_BACHD DNA-DIRECTED RNA POLYMERASE ALPHA; E=1e-06 COG: BS_rpoA; COG0202 DNA-directed RNA polymerase alpha subunit/40 kD; E=1e-08 PFAM: PF01000; Bacterial RNA polymerase, alpha; E=8.2e-15 NP_867612.1 PMID: 10684935 best DB hits: BLAST: pir:B75110; lipoate-protein ligase A related PAB1916 - Pyrococcus; E=7e-10 pir:F72056; lipoate-protein ligase-related protein CP0129 [imported]; E=2e-09 gb:AAK04161.1; AE006244_10 (AE006244) lipoate-protein ligase; E=2e-09 COG: PAB1916; COG0095 Lipoate-protein ligase A; E=7e-11 PFAM: PF02539; Lipoate-protein ligase A; E=0.00023 NP_867613.1 PMID: 9371463 best DB hits: BLAST: pir:F69192; conserved hypothetical protein MTH695 - Methanobacterium; E=0.003 gb:AAG18647.1; (AE004970) Vng0003c [Halobacterium sp. NRC-1]; E=0.015 embl:CAB89462.1; (AL354048) ABC transporter integral; E=0.024 COG: MTH695; COG0577 Predicted permease; E=3e-04 PFAM: PF01890; CbiG; E=0.096 PF02687; Predicted permease; E=5.7e-06 PF00951; Arterivirus GL envelope glycop; E=0.081 NP_867615.1 best DB hits: PFAM: PF02321; Outer membrane efflux protein; E=0.52 NP_867617.1 PMID: 10360571 best DB hits: BLAST: pir:D72377; oxidoreductase, short chain dehydrogenasereductase; E=7e-38 gb:AAB90046.1; (AE001021) 2-deoxy-D-gluconate 3-dehydrogenase; E=9e-35 swissprot:P39640; YWFD_BACSU HYPOTHETICAL OXIDOREDUCTASE IN; E=2e-33 COG: TM0441; COG1028 Dehydrogenases with different specificities (related; E=6e-39 BS_ywfD; COG1028 Dehydrogenases with different specificities; E=2e-34 BH2491; COG1028 Dehydrogenases with different specificities (related; E=5e-30 PFAM: PF00106; short chain dehydrogenase; E=2.2e-65 PF00678; Short chain dehydrogenase/reduct; E=1.1e-11 NP_867619.1 catalyzes the hydrolysis of pyrophosphate to phosphate NP_867621.1 decarboxylates 4-phosphopantothenoylcysteine to form 4'-phosphopantotheine. NP_867623.1 PMID: 8390989 best DB hits: BLAST: swissprot:P24234; KGUA_ECOLI GUANYLATE KINASE (GMP KINASE) -----; E=8e-32 gb:AAG58792.1; AE005592_3 (AE005592) guanylate kinase [Escherichia; E=5e-31 pir:C72223; guanylate kinase - Thermotoga maritima (strain MSB8); E=7e-31 COG: gmk; COG0194 Guanylate kinase; E=8e-33 PFAM: PF01583; Adenylylsulfate kinase; E=0.11 PF00005; ABC transporter; E=0.019 PF00485; Phosphoribulokinase / Uridine; E=0.33 NP_867624.1 PMID: 10192928 best DB hits: BLAST: ddbj:BAB06233.1; (AP001515) BH2514~unknown conserved protein; E=2e-32 pir:C82350; conserved hypothetical protein VC0209 [imported] -; E=1e-30 pir:A69878; conserved hypothetical protein yloC - Bacillus subtilis; E=8e-30 COG: BH2514; COG1561 Uncharacterized stress-induced protein; E=2e-33 NP_867626.1 PMID: 1452037 best DB hits: BLAST: ddbj:BAB07277.1; (AP001519) triosephosphate isomerase [Bacillus; E=6e-61 swissprot:P35144; TPIS_BACME TRIOSEPHOSPHATE ISOMERASE (TIM); E=1e-59 swissprot:P27876; TPIS_BACSU TRIOSEPHOSPHATE ISOMERASE (TIM); E=3e-58 COG: BH3558; COG0149 Triosephosphate isomerase; E=6e-62 PFAM: PF00121; Triosephosphate isomerase; E=3.8e-140 NP_867627.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate NP_867629.1 PMID: 9139909 best DB hits: BLAST: gb:AAC45219.1; (U87308) extracytoplasmic function alternative; E=3e-10 pir:H70507; probable sigE protein - Mycobacterium tuberculosis; E=4e-09 ddbj:BAB03982.1; (AP001507) RNA polymerase ECF-type sigma factor; E=2e-08 COG: Rv1221; COG1595 DNA-directed RNA polymerase specialized sigma; E=4e-10 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=0.028 PF00140; Sigma-70 factor; E=0.00033 PF01381; Helix-turn-helix; E=0.055 NP_867630.1 PMID: 9278503 best DB hits: BLAST: swissprot:P76481; YFBK_ECOLI HYPOTHETICAL 63.6 KD PROTEIN IN; E=3e-99 embl:CAB75310.1; (AL139164) lipoprotein [Streptomyces; E=4e-54 swissprot:Q55874; Y103_SYNY3 HYPOTHETICAL 45.8 KD PROTEIN SLL0103; E=8e-10 COG: yfbK; COG2304 Protein containing von Willebrand factor (vWF) type A; E=1e-100 sll0103; COG2304 Protein containing von Willebrand factor (vWF) type; E=7e-11 PFAM: PF00092; von Willebrand factor type A domain; E=4.9e-07 NP_867631.1 PMID: 11792842 NP_867632.1 best DB hits: BLAST: swissprot:Q19200; STO1_CAEEL STO-1 PROTEIN ----- pir: T15971; E=0.006 embl:CAB94650.1; (AL359215) secreted protein.; E=0.039 pir:E72322; conserved hypothetical protein - Thermotoga maritima; E=0.26 NP_867633.1 PMID: 9477341 best DB hits: BLAST: embl:CAB64583.1; (AL135941) hypothetical protein L391.06; E=0.003 gb:AAK04726.1; AE006295_7 (AE006295) conserved hypothetical; E=0.038 ddbj:BAB10843.1; (AB009053) hypersensitive-induced response; E=0.88 NP_867638.1 PMID: 2991205 best DB hits: BLAST: swissprot:P07395; SYFB_ECOLI PHENYLALANYL-TRNA SYNTHETASE BETA; E=3e-78 gb:AAG56700.1; AE005394_9 (AE005394) phenylalanine tRNA; E=6e-78 embl:CAA23565.1; (V00291) phenylalanyl-tRNA synthetase; E=3e-77 COG: pheT_2; COG0072 Phenylalanyl-tRNA synthetase beta subunit; E=3e-79 PFAM: PF01588; tRNA binding domain; E=2.2e-05 NP_867640.1 PMID: 6317865 best DB hits: BLAST: embl:CAA23564.1; (V00291) phenylalanyl-tRNA synthetase; E=6e-76 gb:AAA51469.1; (K02844) phenylalanyl-tRNA synthetase; E=6e-76 swissprot:P08312; SYFA_ECOLI PHENYLALANYL-TRNA SYNTHETASE ALPHA; E=3e-75 COG: pheS; COG0016 Phenylalanyl-tRNA synthetase alpha subunit; E=3e-76 PFAM: PF02912; Aminoacyl tRNA synthetase class; E=3.9e-08 PF01409; tRNA synthetases class II (F); E=9.4e-92 NP_867641.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit NP_867643.1 PMID: 9823893 best DB hits: BLAST: swissprot:Q9ZCV1; RL35_RICPR 50S RIBOSOMAL PROTEIN L35 -----; E=0.55 PFAM: PF01632; Ribosomal protein L35; E=2.6e-15 NP_867644.1 PMID: 10984043 best DB hits: BLAST: pir:A83355; hypothetical protein PA2336 [imported] - Pseudomonas; E=0.022 NP_867645.1 PMID: 10567266 best DB hits: BLAST: pir:D75276; response regulator - Deinococcus radiodurans (strain R1); E=4e-14 pir:A75522; response regulator - Deinococcus radiodurans (strain R1); E=8e-14 pir:D75617; response regulator - Deinococcus radiodurans (strain R1); E=4e-13 COG: DR2420; COG0784 CheY-like receiver domains; E=4e-15 sll0921; COG2197 Response regulators consisting of a CheY-like; E=1e-05 VC1349_3; COG0784 CheY-like receiver domains; E=3e-05 PFAM: PF00072; Response regulator receiver doma; E=5.6e-13 NP_867650.1 PMID: 8890205 best DB hits: BLAST: pir:F82744; ferrous iron transport protein B XF0933 [imported] -; E=7e-89 pir:T03547; probable ferrous iron transport protein b - Rhodobacter; E=3e-84 gb:AAB91270.1; (AE001111) iron (II) transporter (feoB-2); E=8e-80 COG: XF0933; COG0370 Ferrous ion uptake system protein FeoB (predicted; E=6e-90 PFAM: PF01926; GTPase of unknown function; E=0.029 PF02421; Ferrous iron transport protei; E=1.5e-56 NP_867651.1 PMID: 93377076 best DB hits: PFAM: PF02470; mce related protein; E=1.5e-09 NP_867652.1 PMID: 10710307 best DB hits: BLAST: pir:G81022; ABC transporter ATP-binding protein NMB1966 [imported]; E=1e-40 pir:B81966; probable ABC transport ATP-binding protein NMA0485; E=2e-40 swissprot:O06784; MKL_MYCTU POSSIBLE RIBONUCLEOTIDE TRANSPORT; E=1e-38 COG: NMB1966; COG1127 Uncharacterized ABC-type transport system, ATPase; E=1e-41 PA2350; COG1135 Uncharacterized ABC-type transport system ATPase; E=1e-32 XF0421; COG1127 Uncharacterized ABC-type transport system, ATPase; E=3e-32 PFAM: PF00006; ATP synthase alpha/beta family, n; E=0.092 PF00485; Phosphoribulokinase / Uridine kin; E=0.42 PF00005; ABC transporter; E=1.2e-54 NP_867653.1 PMID: 10984043 best DB hits: BLAST: pir:G71718; hypothetical protein RP096 - Rickettsia prowazekii; E=4e-38 pir:E70331; conserved hypothetical protein aq_355 - Aquifex aeolicus; E=6e-37 pir:S74989; hypothetical protein slr1045 - Synechocystis sp. (strain; E=5e-35 COG: RP096; COG0767 Permease component of an ABC-transporter; E=3e-39 PFAM: PF02405; Domain of unknown function DUF140; E=4.8e-79 NP_867656.1 PMID: 10731132 best DB hits: BLAST: gb:AAF56315.1; (AE003748) CG13625 gene product [Drosophila; E=0.27 NP_867657.1 PMID: 9384377 best DB hits: BLAST: pir:A70081; conserved hypothetical protein yxkH - Bacillus subtilis; E=2e-10 pir:A82350; conserved hypothetical protein VC0239 [imported] -; E=6e-09 pir:D82751; conserved hypothetical protein XF0878 [imported] -; E=2e-08 COG: BS_yxkH; COG0726 Predicted xylanase/chitin deacetylase; E=2e-11 PFAM: PF01522; Polysaccharide deacetylase; E=0.036 NP_867658.1 PMID: 10360571 best DB hits: BLAST: pir:E72354; probable hexosyltransferase (EC 2.4.1.-) TM0622 -; E=2e-24 gb:AAD50490.1; AF172324_8 (AF172324) WbnE [Escherichia coli]; E=5e-19 pir:E70036; capsular polysaccharide biosynthesis homolog yveP -; E=1e-18 COG: TM0622; COG0438 Predicted glycosyltransferases; E=2e-25 PFAM: PF00534; Glycosyl transferases group 1; E=1.8e-41 NP_867659.1 PMID: 10984043 best DB hits: BLAST: pir:B83329; probable acyltransferase PA2537 [imported] - Pseudomonas; E=1e-38 gb:AAK04085.1; (AE006236) unknown [Pasteurella multocida]; E=3e-33 pir:A82139; conserved hypothetical protein VC1937 [imported] -; E=3e-13 COG: PA2537; COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; E=1e-39 PFAM: PF01553; Acyltransferase; E=6.5e-16 NP_867662.1 PMID: 8843436 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=5e-09 embl:CAB94634.1; (AL359215) secreted glycosyl hydrolase.; E=3e-07 PFAM: PF01302; CAP-Gly domain; E=0.33 NP_867663.1 best DB hits: BLAST: swissprot:Q50695; YM67_MYCTU HYPOTHETICAL 46.1 KDA PROTEIN RV2267C; E=3e-72 pir:B70675; hypothetical protein Rv3529c - Mycobacterium; E=0.001 pir:T31307; type I fatty acid synthase homolog - Cryptosporidium; E=0.17 NP_867664.1 best DB hits: BLAST: pir:D75036; hypothetical protein PAB3319 - Pyrococcus abyssi (strain; E=3e-24 pir:C71127; hypothetical protein PHS025 - Pyrococcus horikoshii; E=1e-17 gb:AAB90424.1; (AE001047) A. fulgidus predicted coding region; E=9e-17 COG: PAB3319; COG1694 Predicted pyrophosphatase; E=3e-25 NP_867666.1 PMID: 9389475 best DB hits: BLAST: pir:S74476; ABC-type transport protein slr1113 - Synechocystis sp.; E=3e-48 pir:S76626; ABC-type transport protein sll0489 - Synechocystis sp.; E=2e-42 gb:AAB90107.1; (AE001025) ABC transporter ATP-binding protein; E=2e-40 COG: slr1113; COG1131 ABC-type multidrug transport system, ATPase; E=2e-49 BH1054_2; COG0842 Permease component of an ABC-transporter; E=6e-41 PA3672; COG1131 ABC-type multidrug transport system, ATPase; E=2e-39 PFAM: PF00005; ABC transporter; E=9.2e-45 NP_867667.1 PMID: 7806516 best DB hits: BLAST: gb:AAK04875.1; AE006311_6 (AE006311); E=3e-11 pir:D70065; (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; E=5e-11 gb:AAF98278.1; AF197933_8 (AF197933) beta-hydroxyacyl-ACP; E=9e-11 COG: BS_ywpB; COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier; E=5e-12 PFAM: PF01377; Thioester dehydrase; E=6e-11 NP_867668.1 PMID: 1556094 best DB hits: BLAST: gb:AAC35700.1; (AF041468) acyl carrier protein [Guillardia; E=2e-06 pir:C41609; acyl carrier protein - Cryptomonas sp. chloroplast; E=3e-06 swissprot:P20804; ACP_SYNY3 ACYL CARRIER PROTEIN (ACP) -----; E=1e-05 COG: ssl2084; COG0236 Acyl carrier protein; E=1e-06 PFAM: PF00550; Phosphopantetheine attachment site; E=3.6e-07 NP_867669.1 PMID: 7806516 best DB hits: BLAST: ddbj:BAB07454.1; (AP001519) hydroxymyristoyl-(acyl carrier; E=4e-09 pir:A70305; (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase; E=5e-09 pir:H71826; (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; E=7e-09 COG: BH3735; COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier; E=4e-10 PFAM: PF01377; Thioester dehydrase; E=0.00031 NP_867670.1 PMID: 7768872 best DB hits: BLAST: ddbj:BAB06601.1; (AP001517) 3-oxoacyl-(acyl-carrier protein); E=4e-93 pir:G69842; 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); E=5e-91 pir:S77464; 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); E=6e-88 COG: BH2882; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; E=4e-94 PFAM: PF00109; Beta-ketoacyl synthase, N-ter; E=6.3e-46 PF02801; Beta-ketoacyl synthase, C-ter; E=5.1e-73 NP_867672.1 PMID: 2198286 best DB hits: BLAST: gb:AAD47627.1; (AF153713) octylprenyl diphosphate synthase-like; E=6e-40 pir:C83075; octaprenyl-diphosphate synthase PA4569 [imported] -; E=8e-40 ddbj:BAA22867.1; (AB001997) solanesyl diphosphate synthase; E=7e-37 COG: PA4569; COG0142 Geranylgeranyl pyrophosphate synthase; E=7e-41 PFAM: PF00348; Polyprenyl synthetase; E=1.4e-49 NP_867673.1 PMID: 8361352 best DB hits: BLAST: pir:T46857; molybdenum cofactor biosynthesis protein C [imported] -; E=4e-23 swissprot:P30747; MOAC_ECOLI MOLYBDENUM COFACTOR BIOSYNTHESIS; E=8e-23 pdb:1EKR; A Chain A, Moac Protein From E. Coli; E=1e-22 COG: moaC; COG0315 Molybdenum cofactor biosynthesis enzyme; E=8e-24 PFAM: PF01967; MoaC family; E=4.4e-71 NP_867678.1 best DB hits: BLAST: gb:AAD12184.1; (U57900) utilizing regulatory protein tutC; E=4e-04 pir:S76529; hypothetical protein - Synechocystis sp. (strain PCC; E=0.002 embl:CAB88489.1; (AL353816) two-component systen; E=0.003 COG: sll0396; COG0745 Response regulators consisting of a CheY-like; E=2e-04 BB0419_1; COG0784 CheY-like receiver domains; E=8e-04 slr0115; COG0745 Response regulators consisting of a CheY-like; E=8e-04 PFAM: PF00072; Response regulator receiver do; E=0.027 NP_867682.1 PMID: 10360571 best DB hits: BLAST: pir:C72374; hypothetical protein TM0467 - Thermotoga maritima; E=3e-16 embl:CAB56681.1; (AL121596) hypothetical protein SCF51A.29c; E=2e-14 embl:CAC01561.1; (AL391039) conserved hypothetical protein; E=4e-14 COG: TM0467; COG2208 Serine phosphatase RsbU, regulator of sigma subunit; E=3e-17 Rv1827; COG1716 FHA-domain-containing proteins; E=1e-09 slr1860_2; COG2208 Serine phosphatase RsbU, regulator of sigma; E=4e-09 PFAM: PF00498; FHA domain; E=1.4e-20 PF01590; GAF domain; E=3.5e-17 NP_867683.1 PMID: 9477341 best DB hits: BLAST: pir:T04014; hypothetical protein F17A8.20 - Arabidopsis thaliana; E=4e-45 pir:T14319; protein AX110P - carrot ----- ddbj: BAA03455.1; E=2e-35 embl:CAB55380.1; (AL117263) oxidoreductase [Leishmania; E=6e-35 COG: BH3843; COG0673 Predicted dehydrogenases and related proteins; E=2e-26 PFAM: PF01408; Oxidoreductase, NAD-bin; E=0.0035 PF02894; Oxidoreductase, C-termi; E=0.11 NP_867686.1 PMID: 8905231 best DB hits: BLAST: pir:S74786; hypothetical protein slr1083 - Synechocystis sp. (strain; E=3e-16 embl:CAA77141.1; (Y18353) hypothetical protein [Thermus; E=2e-14 embl:CAA71549.1; (Y10525) arg-ORF1 [Thermus thermophilus]; E=2e-14 NP_867687.1 PMID: 8905231 best DB hits: BLAST: pir:S74550; hypothetical protein slr0240 - Synechocystis sp. (strain; E=9e-07 swissprot:O07127; YPTY_LACSK HYPOTHETICAL 16.5 KD PROTEIN IN PTSI; E=3e-04 swissprot:Q47839; COPY_ENTHR COPAB ATPASES METAL-FIST TYPE; E=0.052 NP_867688.1 PMID: 3040663 PMID: 3260234 PMID: 2404938 best DB hits: BLAST: swissprot:P12287; BLAR_BACLI REGULATORY PROTEIN BLAR1 -----; E=1e-12 pir:I39942; penicillinase antirepressor penJ - Bacillus; E=1e-11 swissprot:P26597; MECR_STAEP METHICILLIN RESISTANCE MECR1 PROTEIN; E=6e-05 PFAM: PF02687; Predicted permease; E=0.51 NP_867689.1 PMID: 3515318 PMID: 6330676 best DB hits: BLAST: swissprot:P07028; UVRC_ECOLI EXCINUCLEASE ABC SUBUNIT C; E=5e-20 ddbj:BAA15733.1; (D90832) Excinuclease ABC subunit C.; E=5e-20 pir:G81845; excinuclease ABC subunit C NMA1540 [imported] -; E=6e-20 COG: NMB1326; COG0322 Nuclease subunit of the excinuclease complex; E=2e-20 PFAM: PF01541; Endo/excinuclease amino terminal; E=1.1e-10 PF02151; UvrB/uvrC motif; E=0.00034 NP_867691.1 PMID: 12024217 NP_867692.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine NP_867694.1 best DB hits: PFAM: PF02151; UvrB/uvrC motif; E=5.6e-08 NP_867696.1 PMID: 98196666 PMID: 9537320 best DB hits: BLAST: swissprot:O67053; PHOU_AQUAE PHOSPHATE TRANSPORT SYSTEM PROTEIN; E=1e-30 swissprot:Q51547; PHOU_PSEAE PHOSPHATE TRANSPORT SYSTEM PROTEIN; E=6e-23 swissprot:Q9Z410; PHOU_PSEPU PHOSPHATE TRANSPORT SYSTEM PROTEIN; E=4e-22 COG: aq_906; COG0704 Phosphate uptake regulator; E=1e-31 NP_867697.1 PMID: 96337999 PMID: 8688087 best DB hits: BLAST: swissprot:Q58418; PSTB_METJA PROBABLE PHOSPHATE TRANSPORT; E=2e-84 swissprot:P07655; PSTB_ECOLI PHOSPHATE TRANSPORT ATP-BINDING; E=3e-82 ddbj:BAA22864.1; (D89963) peripheral membrane protein; E=6e-81 COG: MJ1012; COG1117 ABC-type phosphate transport system, ATPase; E=2e-85 pstB; COG1117 ABC-type phosphate transport system, ATPase component; E=3e-83 PA5366; COG1117 ABC-type phosphate transport system, ATPase; E=7e-82 PFAM: PF00005; ABC transporter; E=3.1e-55 NP_867698.1 PMID: 99411980 best DB hits: BLAST: ddbj:BAB06711.1; (AP001517) phosphate ABC transporter (permease); E=1e-26 gb:AAB89888.1; (AE001010) phosphate ABC transporter, permease; E=1e-25 pir:D82504; phosphate ABC transporter, permease VCA0072; E=6e-17 COG: BH2992; COG0581 ABC-type phosphate transport system, permease; E=9e-28 MTH1729; COG0573 ABC-type phosphate transport system, permease; E=1e-16 sll0682; COG0581 ABC-type phosphate transport system, permease; E=4e-16 PFAM: PF00060; Ligand-gated ion channel; E=0.035 PF00528; Binding-protein-dependent transpor; E=1.1e-15 NP_867699.1 PMID: 99411980 best DB hits: BLAST: ddbj:BAB06712.1; (AP001517) phosphate ABC transporter (permease); E=2e-59 gb:AAG18997.1; (AE004999) phosphate ABC transporter permease; E=4e-48 gb:AAB89889.1; (AE001010) phosphate ABC transporter, permease; E=1e-46 COG: BH2993; COG0573 ABC-type phosphate transport system, permease; E=2e-60 VCA0072; COG0581 ABC-type phosphate transport system, permease; E=4e-22 HI1382; COG0573 ABC-type phosphate transport system, permease; E=6e-22 PFAM: PF00528; Binding-protein-dependent tran; E=4.3e-11 NP_867700.1 PMID: 95075296 PMID: 7741855 best DB hits: BLAST: swissprot:P39665; SPHX_SYNP7 SPHX PROTEIN PRECURSOR ----- pir:; E=9e-59 swissprot:Q55200; SPHX_SYNY3 SPHX PROTEIN HOMOLOG PRECURSOR; E=4e-56 gb:AAB89890.1; (AE001010) phosphate ABC transporter, periplasmic; E=3e-53 COG: sll0679; COG0226 ABC-type phosphate transport system, periplasmic; E=4e-57 PFAM: PF01449; Phosphate-binding protein; E=2.2e-64 NP_867703.1 PMID: 99411980 best DB hits: BLAST: ddbj:BAB05512.1; (AP001513) carbon starvation-induced protein; E=3e-82 swissprot:O67304; CSTA_AQUAE CARBON STARVATION PROTEIN A HOMOLOG; E=5e-65 pir:E75032; carbon starvation protein A homolog PAB1554 [similarity]; E=1e-53 COG: BH1793; COG1966 Carbon starvation protein, predicted membrane; E=3e-83 yjiY; COG1966 Carbon starvation protein, predicted membrane protein; E=2e-47 jhp1095; COG1966 Carbon starvation protein, predicted membrane; E=3e-47 PFAM: PF02554; Carbon starvation protein CstA; E=2.2e-104 NP_867705.1 best DB hits: BLAST: gb:AAB64789.1; (U28372) Similar to Thioredoxin reductase (Swiss; E=2e-76 swissprot:P51978; TRXB_NEUCR THIOREDOXIN REDUCTASE ----- pir:; E=5e-75 gb:AAB68856.1; (U00059) Yhr106wp [Saccharomyces cerevisiae]; E=2e-74 COG: YDR353w; COG0492 Thioredoxin reductase/alkyl hydroperoxide reductase; E=1e-77 VNG1259G; COG0492 Thioredoxin reductase/alkyl hydroperoxide; E=5e-53 BS_trxB; COG0492 Thioredoxin reductase/alkyl hydroperoxide reductase; E=4e-48 PFAM: PF02032; Phytoene dehydrogenase related; E=0.056 PF00070; Pyridine nucleotide-disulphide; E=3.1e-09 NP_867710.1 best DB hits: BLAST: pir:G69192; ABC transporter (glutamine transport ATP-binding; E=5e-39 pir:A82184; ABC transporter ATP-binding protein VC1568 [imported] -; E=5e-38 pir:H72342; ABC transporter ATP-binding protein - Thermotoga; E=6e-38 COG: MTH696; COG1136 ABC-type (unclassified) transport system, ATPase; E=5e-40 PFAM: PF00005; ABC transporter; E=6.5e-58 NP_867713.1 This protein performs the mismatch recognition step during the DNA repair process NP_867715.1 best DB hits: BLAST: gb:AAD51954.1; (AF170528) glycoprotein IIb; GPIIb [Oryctolagus; E=0.85 NP_867716.1 best DB hits: BLAST: gb:AAB40278.1; (U82664) hypothetical protein [Escherichia coli]; E=6e-04 NP_867717.1 PMID: 9317025 best DB hits: BLAST: pir:H82708; peptidyl-prolyl cis-trans isomerase XF1212 [imported] -; E=7e-34 swissprot:O66105; PPIB_TREPA PROBABLE PEPTIDYL-PROLYL CIS-TRANS; E=8e-34 pir:E75543; peptidylprolyl isomerase (EC 5.2.1.8) DR0237; E=1e-30 COG: XF1212; COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) -; E=7e-35 PFAM: PF00160; Cyclophilin type peptidyl-proly; E=1.1e-67 NP_867720.1 PMID: 2575672 PMID: 1357539 best DB hits: BLAST: swissprot:P04772; GLN2_BRAJA GLUTAMINE SYNTHETASE II; E=1e-103 swissprot:Q02154; GLN2_RHILP GLUTAMINE SYNTHETASE II; E=1e-99 swissprot:P45626; GLN2_RHIME GLUTAMINE SYNTHETASE II; E=9e-97 COG: YPR035w; COG0174 Glutamine synthase; E=5e-83 PFAM: PF00120; Glutamine synthetase; E=3.6e-133 NP_867723.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_867725.1 PMID: 10801787 best DB hits: BLAST: gb:AAF70456.1; AF221952_1 (AF221952) mu-protocadherin [Rattus; E=0.027 gb:AAF46574.1; (AE003450) CG2908 gene product [Drosophila; E=0.041 gb:AAG16897.1; AF182040_1 (AF182040) LAG protein [Mus musculus]; E=0.29 NP_867726.1 PMID: 97000351 best DB hits: BLAST: pir:T34946; probable isoleucyl-tRNA synthetase - Streptomyces; E=0.0 pir:C81552; isoleucyl-tRNA synthetase CP0665 [imported] -; E=0.0 swissprot:Q9Z972; SYI_CHLPN ISOLEUCYL-TRNA SYNTHETASE; E=0.0 COG: CPn0109; COG0060 Isoleucyl-tRNA synthetase; E=0.0 PFAM: PF00133; tRNA synthetases class I (I, L, M; E=1.8e-132 NP_867727.1 PMID: 95004650 best DB hits: BLAST: embl:CAA52779.2; (X74767) phosphoribosylglycinamide; E=1e-25 swissprot:P52422; PUR3_ARATH PHOSPHORIBOSYLGLYCINAMIDE; E=1e-25 pir:T11574; phosphoribosylglycinamide formyltransferase (EC 2.1.2.2); E=2e-25 COG: aq_857; COG0299 Folate-dependent phosphoribosylglycinamide; E=1e-23 VC1992; COG0788 Formyltetrahydrofolate hydrolase; E=9e-12 Cj0187c; COG0299 Folate-dependent phosphoribosylglycinamide; E=4e-11 PFAM: PF00551; Formyl transferase; E=2.9e-41 NP_867729.1 PMID: 98196666 best DB hits: BLAST: pir:D70370; hypothetical protein aq_808 - Aquifex aeolicus -----; E=1e-05 PFAM: PF00430; ATP synthase B/B' CF(0); E=0.87 NP_867733.1 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde NP_867734.1 PMID: 20392447 best DB hits: BLAST: embl:CAC01604.1; (AJ269505) peptide synthetase [Anabaena sp. 90]; E=4e-91 embl:CAC11137.1; (AJ250581) NikP1 protein [Streptomyces tendae]; E=9e-91 gb:AAF17281.1; (AF204805) NosD [Nostoc sp. GSV224]; E=4e-89 COG: PA2424_3; COG1020 Non-ribosomal peptide synthetase modules and related; E=9e-85 BS_ppsC_1; COG1020 Non-ribosomal peptide synthetase modules and; E=5e-83 BS_dhbF; COG1020 Non-ribosomal peptide synthetase modules and related; E=2e-81 PFAM: PF00501; AMP-binding enzyme; E=2.2e-131 PF00550; Phosphopantetheine attachment; E=3.1e-21 PF00561; alpha/beta hydrolase fold; E=0.22 NP_867735.1 best DB hits: BLAST: pir:T45719; hypothetical protein F1P2.140 - Arabidopsis thaliana; E=0.014 pir:G82643; conserved hypothetical protein XF1745 [imported] -; E=0.023 pir:T45716; hypothetical protein F1P2.110 - Arabidopsis thaliana; E=0.072 COG: XF1745; COG1073 Hydrolases of the alpha/beta superfamily; E=0.002 NP_867740.1 PMID: 20365717 PMID: 10910347 best DB hits: BLAST: pir:E82847; lipid A biosynthesis lauroyl acyltransferase XF0104; E=8e-07 pir:A81318; probable lipid A biosynthesis lauroyl acyltransferase; E=2e-06 gb:AAG43974.1; AF215659_2 (AF215659) acyltransferase; E=1e-05 COG: XF0104; COG1560 Lauroyl/myristoyl acyltransferase involved in lipid; E=8e-08 RP718; COG1560 Lauroyl/myristoyl acyltransferase involved in lipid A; E=4e-04 CPn0098; COG1560 Lauroyl/myristoyl acyltransferase involved in lipid; E=0.005 NP_867741.1 PMID: 11214968 best DB hits: BLAST: pir:C72369; hypothetical protein TM0484 - Thermotoga maritima; E=6e-08 ddbj:BAB06401.1; (AP001516) thiamine biosynthesis [Bacillus; E=0.009 pir:H72008; ABC transporter permease - Chlamydophila pneumoniae; E=0.42 COG: TM0484; COG0715 ABC-type nitrate/sulfonate/taurine/bicarbonate; E=6e-09 NP_867742.1 best DB hits: BLAST: gb:AAK03349.1; (AE006165) unknown [Pasteurella multocida]; E=1e-19 pir:F83207; probable permease of ABC transporter PA3512 [imported] -; E=2e-19 ddbj:BAB06400.1; (AP001516) ABC transporter (permease) [Bacillus; E=6e-19 COG: PA3512; COG0600 ABC-type nitrate/sulfonate/taurine/bicarbonate; E=2e-20 PA5095; COG1174 ABC-type proline/glycine betaine transport systems,; E=1e-09 CT854_1; COG0600 ABC-type nitrate/sulfonate/taurine/bicarbonate; E=2e-09 PFAM: PF00528; Binding-protein-dependent transpor; E=0.003 NP_867743.1 PMID: 90264334 PMID: 2188958 best DB hits: BLAST: swissprot:P16676; CYSA_ECOLI SULFATE TRANSPORT ATP-BINDING PROTEIN; E=2e-33 gb:AAG57540.1; AE005472_7 (AE005472) ATP-binding component of; E=2e-33 ddbj:BAA21795.1; (AB000100) malK-like protein [Synechococcus sp.]; E=7e-33 COG: cysA; COG1118 ABC-type sulfate/molybdate transport systems, ATPase; E=1e-34 NMB0879; COG1118 ABC-type sulfate/molybdate transport systems,; E=6e-33 VC0541; COG1118 ABC-type sulfate/molybdate transport systems, ATPase; E=8e-33 PFAM: PF00071; Ras family; E=0.11 PF00004; ATPase associated with var; E=0.012 PF00005; ABC transporter; E=4.2e-47 NP_867745.1 PMID: 98332770 best DB hits: BLAST: pir:A71318; conserved hypothetical protein TP0489 - syphilis; E=9e-05 gb:AAB90300.1; (AE001039) conserved hypothetical protein; E=1e-04 pir:S74614; hypothetical protein sll1036 - Synechocystis sp. (strain; E=0.001 COG: TP0489; COG1235 Metal-dependent hydrolases of the beta-lactamase; E=8e-06 AF0939; COG1234 Metal-dependent hydrolases of the beta-lactamase; E=1e-05 sll1036; COG1235 Metal-dependent hydrolases of the beta-lactamase; E=1e-04 NP_867746.1 PMID: 20479972 best DB hits: BLAST: embl:CAC11337.1; (AL445063) probable glucose 1-dehydrogenase; E=5e-28 ddbj:BAB20935.2; (D85817) ORF [Staphylococcus aureus]; E=2e-27 ddbj:BAB06210.1; (AP001515) 3-oxoacyl-(acyl-carrier protein); E=2e-27 COG: Ta0191; COG1028 Dehydrogenases with different specificities (related; E=5e-29 BS_ycdF; COG1028 Dehydrogenases with different specificities; E=3e-27 yohF; COG1028 Dehydrogenases with different specificities (related; E=5e-26 PFAM: PF02882; Tetrahydrofolate dehydrogenase/; E=0.28 PF00106; short chain dehydrogenase; E=2.2e-53 PF00678; Short chain dehydrogenase/reduc; E=8.9e-10 NP_867748.1 PMID: 20406833 best DB hits: BLAST: pir:D82096; hypothetical protein VC2280 [imported] - Vibrio cholerae; E=1e-25 pir:C82997; hypothetical protein PA5196 [imported] - Pseudomonas; E=6e-13 pir:B82234; hypothetical protein VC1162 [imported] - Vibrio cholerae; E=3e-07 NP_867750.1 PMID: 20437337 best DB hits: BLAST: pir:D82997; ribosomal protein S6 modification protein PA5197; E=3e-76 pir:E82096; ribosomal protein S6 modification protein VC2281; E=2e-74 swissprot:P17116; RIMK_ECOLI RIBOSOMAL PROTEIN S6 MODIFICATION; E=1e-60 COG: PA5197; COG0189 Glutathione synthase/Ribosomal protein S6; E=3e-77 rimK; COG0189 Glutathione synthase/Ribosomal protein S6 modification; E=1e-61 HI1531; COG0189 Glutathione synthase/Ribosomal protein S6; E=2e-50 PFAM: PF02080; Potassium channel; E=3.8e-10 NP_867751.1 PMID: 9268317 best DB hits: BLAST: pir:E83274; tetraacyldisaccharide 4*-kinase PA2981 [imported] -; E=4e-25 pir:C82146; probable tetraacyldisaccharide 4'-kinase (EC 2.7.1.130); E=2e-23 pir:C70443; conserved hypothetical protein aq_1656 - Aquifex; E=2e-22 COG: PA2981; COG1663 Lipid A biosynthesis protein LpxK,; E=3e-26 sll0572; COG2403 Uncharacterized ACR; E=0.002 PFAM: PF02606; Tetraacyldisaccharide-1-P 4'-kinase; E=1.6e-13 NP_867752.1 PMID: 97000351 best DB hits: BLAST: embl:CAB88936.1; (AL353863) helicase [Streptomyces; E=3e-43 swissprot:Q10701; HELY_MYCTU HELICASE HELY ----- pir:; E=5e-43 embl:CAA22943.1; (AL035310) helicase [Mycobacterium; E=2e-41 COG: Rv2092c; COG0513 Superfamily II DNA and RNA helicases; E=5e-44 Ta0835; COG1204 Predicted helicases; E=9e-28 YLR398c; COG0513 Superfamily II DNA and RNA helicases; E=4e-26 PFAM: PF00004; ATPase associated with vari; E=0.0005 PF01695; IstB-like ATP binding protein; E=0.0061 PF00270; DEAD/DEAH box helicase; E=1.2e-29 NP_867754.1 PMID: 97404404 best DB hits: BLAST: pir:T03460; probable leucineisoleucine/valine-binding protein; E=1e-36 pir:H75444; branched-chain amino acid ABC transporter, periplasmic; E=4e-04 pir:G75579; branched-chain amino acid ABC transporter, periplasmic; E=9e-04 COG: DR1038; COG0683 Periplasmic leucine/isoleucine/valine-binding; E=4e-05 NP_867755.1 PMID: 20406833 best DB hits: BLAST: pir:H83285; probable two-component sensor PA2882 [imported] -; E=2e-36 pir:F83324; probable two-component sensor PA2571 [imported] -; E=3e-36 pir:D82244; sensory box sensor histidine kinase VC1084 [imported] -; E=7e-34 COG: PA2882; COG0642 Sensory transduction histidine kinases; E=2e-37 PFAM: PF00785; PAC motif; E=5.1e-05 PF00512; His Kinase A (phosphoacceptor); E=0.0012 PF02518; Histidine kinase-, DNA gyrase B; E=5.2e-32 NP_867759.1 PMID: 97000351 PMID: 8843436 best DB hits: BLAST: embl:CAB66286.1; (AL136519) bifunctional carbohydrate binding and; E=2e-20 gb:AAK03409.1; (AE006170) unknown [Pasteurella multocida]; E=4e-20 pir:A72417; sugar ABC transporter, periplasmic sugar-binding protein; E=3e-19 COG: TM0114; COG1879 Periplasmic sugar-binding proteins; E=3e-20 PFAM: PF00532; Periplasmic binding proteins; E=0.038 NP_867761.1 PMID: 99411980 best DB hits: BLAST: ddbj:BAB06103.1; (AP001515) ATP-dependent RNA helicase [Bacillus; E=3e-85 pir:D69772; ATP-dependent RNA helicase homolog ydbR - Bacillus; E=2e-81 gb:AAD20136.1; (AF091502) autoaggregation-mediating protein; E=2e-79 COG: BH2384; COG0513 Superfamily II DNA and RNA helicases; E=3e-86 PFAM: PF00270; DEAD/DEAH box helicase; E=5.5e-71 PF00271; Helicase conserved C-terminal doma; E=1.5e-31 NP_867764.1 best DB hits: BLAST: ddbj:BAB10333.1; (AB016872) gene_id:K21P3.2~unknown protein; E=0.089 PFAM: PF00028; Cadherin domain; E=0.14 PF00797; N-acetyltransferase; E=0.3 PF00404; Dockerin type I repeat; E=0.045 NP_867765.1 PMID: 93125117 PMID: 1479886 PMID: 7891560 best DB hits: BLAST: pir:S61441; surface-associated protein cshA precursor - Streptococcus; E=0.006 PFAM: PF00404; Dockerin type I repeat; E=0.039 NP_867766.1 PMID: 20437337 best DB hits: BLAST: pir:C83147; gamma-glutamyl phosphate reductase PA4007 [imported] -; E=8e-97 swissprot:O67166; PROA_AQUAE GAMMA-GLUTAMYL PHOSPHATE REDUCTASE; E=1e-96 gb:AAK05706.1; AE006391_5 (AE006391) gamma-glutamyl phosphate; E=4e-96 COG: PA4007; COG0014 Gamma-glutamyl phosphate reductase; E=8e-98 VC2033_1; COG1012 NAD-dependent aldehyde dehydrogenases; E=0.001 PFAM: PF00171; Aldehyde dehydrogenase; E=0.0046 NP_867767.1 PMID: 96345631 PMID: 8755894 best DB hits: BLAST: swissprot:P74927; FLIM_TREPA FLAGELLAR MOTOR SWITCH PROTEIN FLIM; E=7e-47 swissprot:Q57511; FLIM_BORBU FLAGELLAR MOTOR SWITCH PROTEIN FLIM; E=5e-46 ddbj:BAB06165.1; (AP001515) flagellar motor switch protein; E=3e-44 COG: TP0721; COG1868 Flagellar motor switch protein; E=7e-48 PFAM: PF02154; Flagellar motor switch protein FliM; E=1.3e-68 PF01052; Surface presentation of antigens (S; E=0.19 NP_867769.1 PMID: 99303335 best DB hits: BLAST: gb:AAD28578.1; AF121341_2 (AF121341) response regulator; E=0.69 NP_867772.1 PMID: 99287316 best DB hits: BLAST: pir:F72359; periplasmic serine proteinase Do (EC 3.4.21.-) -; E=6e-26 pir:B81728; serine proteinase, HtrADegQ/DegS family TC0210; E=6e-25 swissprot:P18584; DEGP_CHLTR PROBABLE SERINE PROTEASE DO-LIKE; E=7e-25 COG: TM0571; COG0265 Trypsin-like serine proteases, typically; E=5e-27 CT823; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=6e-26 Cj1228c; COG0265 Trypsin-like serine proteases, typically; E=8e-26 PFAM: PF00089; Trypsin; E=1.7e-09 PF00595; PDZ domain (Also known as DHR or GLG; E=0.0017 NP_867773.1 PMID: 20150255 best DB hits: BLAST: pir:B81728; serine proteinase, HtrADegQ/DegS family TC0210; E=1e-16 swissprot:P18584; DEGP_CHLTR PROBABLE SERINE PROTEASE DO-LIKE; E=2e-16 swissprot:Q9Z6T0; DEGP_CHLPN PROBABLE SERINE PROTEASE DO-LIKE; E=1e-15 COG: CT823; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=2e-17 CPn0979; COG0265 Trypsin-like serine proteases, typically; E=1e-16 RP124; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=3e-08 PFAM: PF00595; PDZ domain (Also known as DHR or GL; E=1.4e-09 NP_867774.1 PMID: 21145866 best DB hits: BLAST: gb:AAK02818.1; (AE006110) HtrA [Pasteurella multocida]; E=4e-23 swissprot:P45129; HTOA_HAEIN PROBABLE PERIPLASMIC SERINE PROTEASE; E=1e-21 gb:AAC38202.1; (AF018151) HtrA [Haemophilus influenzae]; E=2e-21 COG: HI1259; COG0265 Trypsin-like serine proteases, typically; E=1e-22 htrA; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=2e-17 NMB0532; COG0265 Trypsin-like serine proteases, typically; E=2e-17 PFAM: PF00595; PDZ domain (Also known as DHR or GLG; E=8.4e-09 NP_867775.1 PMID: 12101309 best DB hits: BLAST: pir:S76547; hypothetical protein - Synechocystis sp. (strain PCC; E=0.020 pir:C71559; probable outer membrane leader peptide CT073 - Chlamydia; E=0.27 pir:A81713; conserved hypothetical protein TC0345 [imported] -; E=0.41 NP_867776.1 catalyzes the release of the N-terminal amino acid from a tripeptide NP_867777.1 PMID: 10567266 best DB hits: BLAST: gb:AAF12632.1; AE001826_101 (AE001826) hypothetical protein; E=0.29 NP_867779.1 PMID: 11214968 NP_867781.1 PMID: 98044033 best DB hits: BLAST: pir:E70007; sepiapterin reductase homolog yueD - Bacillus subtilis; E=2e-09 pir:B70407; alcohol dehydrogenase - Aquifex aeolicus ----- gb:; E=3e-09 gb:AAF48896.1; (AE003510) CG7322 gene product [Drosophila; E=5e-08 COG: BS_yueD; COG1028 Dehydrogenases with different specificities; E=2e-10 XF0145; COG0300 Short-chain dehydrogenases of various substrate; E=2e-07 YIR035c; COG1028 Dehydrogenases with different specificities; E=3e-07 PFAM: PF00106; short chain dehydrogenase; E=2.7e-12 NP_867783.1 PMID: 9163424 best DB hits: BLAST: swissprot:P55632; Y4QK_RHISN INTEGRASERECOMBINASE Y4QK; E=7e-25 swissprot:P55429; Y4EF_RHISN INTEGRASERECOMBINASE Y4EF; E=5e-24 prf:2115270D; integrase [Weeksella zoohelcum]; E=4e-18 COG: PAB0255; COG0582 Integrase; E=1e-15 PFAM: PF00589; Phage integrase; E=2.6e-19 NP_867784.1 PMID: 9163424 best DB hits: BLAST: swissprot:P55631; Y4QJ_RHISN TRANSPOSASE Y4QJ -----; E=7e-39 prf:2115270C; transposase [Weeksella zoohelcum]; E=6e-35 pir:S23782; transposase tnpA (insertion sequence IS91) - Escherichia; E=5e-14 NP_867789.1 best DB hits: BLAST: swissprot:P08047; SP1_HUMAN TRANSCRIPTION FACTOR SP1 -----; E=0.76 NP_867791.1 best DB hits: PFAM: PF00903; Glyoxalase/Bleomycin resistance pr; E=0.0062 NP_867792.1 PMID: 97305956 PMID: 9163424 best DB hits: BLAST: swissprot:P55632; Y4QK_RHISN INTEGRASERECOMBINASE Y4QK; E=6e-37 prf:2115270D; integrase [Weeksella zoohelcum]; E=1e-35 swissprot:P55429; Y4EF_RHISN INTEGRASERECOMBINASE Y4EF; E=2e-33 COG: MTH893; COG0582 Integrase; E=1e-31 PFAM: PF02899; Phage integrase, N-terminal S; E=0.0062 PF00589; Phage integrase; E=4.2e-40 NP_867795.1 PMID: 98416126 best DB hits: BLAST: pir:T44684; hypothetical protein Cbi [imported] - Bacillus; E=6e-22 ddbj:BAB05215.1; (AP001512) BH1496~unknown conserved protein; E=2e-19 pir:S75947; hypothetical protein - Synechocystis sp. (strain PCC; E=3e-19 COG: BH1496; COG2138 Uncharacterized ACR; E=2e-20 NP_867797.1 PMID: 98196666 best DB hits: BLAST: pir:F70369; carboxyl-terminal proteinase - Aquifex aeolicus -----; E=4e-49 swissprot:Q44879; CTPA_BARBA CARBOXY-TERMINAL PROCESSING PROTEASE; E=7e-49 pir:B83005; probable carboxyl-terminal proteinase PA5134 [imported]; E=7e-47 COG: aq_797; COG0793 Periplasmic protease; E=3e-50 PFAM: PF00595; PDZ domain (Also known as DHR or GLG; E=0.0011 NP_867799.1 best DB hits: BLAST: embl:CAB37946.1; (AJ133131) histidine kinase (PhoR1); E=2e-43 swissprot:P35164; RESE_BACSU SENSOR PROTEIN RESE ----- pir:; E=7e-40 embl:CAB64973.1; (AJ012050) VicK protein [Enterococcus faecalis]; E=1e-38 COG: BH4026; COG0642 Sensory transduction histidine kinases; E=2e-39 PFAM: PF00989; PAS domain; E=0.0015 PF00512; His Kinase A (phosphoacceptor) doma; E=9.2e-20 PF02518; Histidine kinase-, DNA gyrase B-, p; E=7.3e-38 NP_867804.1 best DB hits: PFAM: PF01433; Peptidase M1; E=0.23 PF01542; Hepatitis C virus core protei; E=0.54 PF00034; Cytochrome c; E=0.002 NP_867805.1 PMID: 99411980 best DB hits: BLAST: pir:G69051; nifS protein - Methanobacterium thermoautotrophicum; E=8e-37 ddbj:BAB07775.1; (AP001520) aminotransferase required for NAD; E=1e-34 pir:F70019; nifS protein homolog yurW - Bacillus subtilis -----; E=4e-27 COG: MTH1389; COG0520 Selenocysteine lyase; E=8e-38 aq_739; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; E=1e-20 BH3469; COG0520 Selenocysteine lyase; E=5e-20 PFAM: PF00266; Aminotransferase class-V; E=1.4e-19 NP_867806.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate NP_867807.1 PMID: 7542800 best DB hits: BLAST: swissprot:P45019; YGDD_HAEIN HYPOTHETICAL PROTEIN HI1073 -----; E=6e-10 pir:C83599; conserved hypothetical protein PA0379 [imported] -; E=2e-09 embl:CAB63338.1; (AL032631) Y106G6H.8 [Caenorhabditis elegans]; E=3e-09 COG: HI1073; COG2363 Uncharacterized small membrane protein; E=6e-11 NP_867808.1 PMID: 97000351 best DB hits: BLAST: embl:CAB93367.1; (AL357523) aspartate carbamoyltransferase; E=4e-67 swissprot:P74163; PYRB_SYNY3 ASPARTATE CARBAMOYLTRANSFERASE; E=6e-64 swissprot:Q59711; PYRB_PSEPU ASPARTATE CARBAMOYLTRANSFERASE; E=5e-63 COG: slr1476; COG0540 Aspartate carbamoyltransferase, catalytic chain; E=6e-65 PFAM: PF02729; Aspartate/ornithine carbamoylt; E=1.1e-44 PF01229; Glycosyl hydrolases family 39; E=0.23 PF00185; Aspartate/ornithine carbamoylt; E=7.1e-18 NP_867809.1 PMID: 97000351 PMID: 7516791 best DB hits: BLAST: embl:CAB93366.1; (AL357523) dihydroorotase [Streptomyces; E=2e-61 swissprot:P71809; PYRC_MYCTU DIHYDROOROTASE (DHOASE) -----; E=2e-54 swissprot:Q59712; PYRX_PSEPU DIHYDROOROTASE-LIKE PROTEIN; E=5e-54 COG: Rv1381; COG0044 Dihydroorotase; E=2e-55 PFAM: PF00744; Dihydroorotase-like; E=5.8e-12 PF02612; N-acetylglucosamine-6-phosphat; E=0.25 PF00744; Dihydroorotase-like; E=1.5e-33 NP_867810.1 PMID: 9628904 PMID: 99356711 PMID: 10427704 PMID: 20512582 PMID: 11058132 best DB hits: BLAST: swissprot:Q9RCA4; RNPA_BACHD RIBONUCLEASE P PROTEIN COMPONENT; E=3e-07 swissprot:Q9Z6X2; RNPA_CHLPN RIBONUCLEASE P PROTEIN COMPONENT; E=3e-06 pir:JQ1214; ribonuclease P (EC 3.1.26.5) protein component rnpA -; E=5e-06 COG: BH4065; COG0594 RNase P protein component; E=3e-08 PFAM: PF00825; Ribonuclease P; E=2.6e-21 NP_867811.1 best DB hits: BLAST: pir:F82509; conserved hypothetical protein VCA0040 [imported] -; E=6e-37 pir:H69160; hypothetical protein MTH465 - Methanobacterium; E=5e-26 gb:AAG19472.1; (AE005039) Vng1069c [Halobacterium sp. NRC-1]; E=2e-19 COG: VCA0040; COG2035 Predicted membrane protein; E=6e-38 NP_867813.1 PMID: 8389741 best DB hits: BLAST: gb:AAG03365.1; (AF024666) BacA [Corynebacterium striatum]; E=2e-26 gb:AAG58191.1; AE005535_3 (AE005535) bacitracin resistance; E=7e-26 swissprot:P31054; BACA_ECOLI BACITRACIN RESISTANCE PROTEIN; E=8e-26 COG: bacA; COG1968 Uncharacterized ACR, bacitracin resistance protein; E=7e-27 MTH1429; COG1968 Uncharacterized ACR, bacitracin resistance; E=2e-06 PFAM: PF02673; Bacitracin resistance protein BacA; E=0.005 NP_867814.1 PMID: 1657879 PMID: 8969214 PMID: 9555905 best DB hits: BLAST: embl:CAA12169.1; (AJ224870) LexA protein [Streptomyces; E=2e-17 swissprot:P31080; LEXA_BACSU LEXA REPRESSOR (SOS REGULATORY; E=8e-17 pir:T35123; SOS response regulator lexA - Streptomyces coelicolor; E=1e-16 COG: BS_lexA; COG1974 SOS-response transcriptional repressors; E=8e-18 lexA; COG1974 SOS-response transcriptional repressors (RecA-mediated; E=2e-14 VC0092; COG1974 SOS-response transcriptional repressors; E=3e-13 PFAM: PF01726; LexA DNA binding domain; E=5.5e-33 PF00717; Peptidase S24; E=0.0016 NP_867815.1 best DB hits: PFAM: PF00461; Signal peptidase I; E=0.0034 NP_867816.1 best DB hits: BLAST: gb:AAF18102.1; AF204400_2 (AF204400) FrgB [Myxococcus xanthus]; E=0.13 ddbj:BAB07745.1; (AP001520) two-component sensor histidine kinase; E=0.83 PFAM: PF02518; Histidine kinase-, DNA gyrase B; E=0.00025 NP_867817.1 PMID: 20437337 PMID: 1905667 best DB hits: BLAST: pir:C83510; flagellar basal-body rod protein FlgB PA1077; E=0.002 gb:AAD19729.1; (AF124349) flagellar basal-body rod protein; E=0.020 gb:AAF14367.1; AF133240_1 (AF133240) flagellar proximal rod; E=0.034 COG: PA1077; COG1815 Flagellar basal body protein; E=1e-04 NP_867818.1 PMID: 2129540 PMID: 2404955 PMID: 11677608 best DB hits: BLAST: swissprot:Q57466; FLGC_BORBU FLAGELLAR BASAL-BODY ROD PROTEIN FLGC; E=2e-18 gb:AAC45656.1; (U82214) FlgC [Proteus mirabilis]; E=4e-18 swissprot:P16438; FLGC_SALTY FLAGELLAR BASAL-BODY ROD PROTEIN FLGC; E=1e-17 COG: BB0293; COG1558 Flagellar basal body rod protein; E=2e-19 PFAM: PF00460; Flagella basal body rod protein; E=0.001 NP_867819.1 PMID: 1905667 best DB hits: BLAST: pir:G72263; flagellar hook-basal body complex protein FliE -; E=7e-05 swissprot:O67242; FLIE_AQUAE FLAGELLAR HOOK-BASAL BODY COMPLEX; E=1e-04 pir:E64714; flagellar hook-basal body complex protein - Helicobacter; E=0.002 COG: TM1366; COG1677 Flagellar hook-basal body protein; E=7e-06 PFAM: PF02049; Flagellar hook-basal body complex pr; E=1.9e-12 NP_867820.1 PMID: 20115548 PMID: 10648530 best DB hits: BLAST: gb:AAD15920.1; (AF069392) polar flagellar M-ring protein FliF; E=6e-04 swissprot:Q53151; FLIF_RHOSH FLAGELLAR M-RING PROTEIN -----; E=0.001 swissprot:O67241; FLIF_AQUAE FLAGELLAR M-RING PROTEIN -----; E=0.002 COG: aq_1182; COG1766 Flagellar biosynthesis/type III secretory pathway; E=2e-04 PFAM: PF01514; Secretory protein of YscJ/FliF fa; E=0.00027 NP_867824.1 PMID: 98282232 best DB hits: BLAST: gb:AAF23370.1; (AF178219) MMSET type II [Homo sapiens]; E=5e-12 ddbj:BAA83042.1; (AB029013) KIAA1090 protein [Homo sapiens]; E=5e-12 gb:AAK00344.1; AF330040_1 (AF330040) IL-5 promoter; E=5e-12 COG: YHR119w; COG2940 Proteins containing SET domain; E=3e-06 PFAM: PF00856; SET domain; E=5.6e-16 NP_867825.1 PMID: 10930739 PMID: 2553733 best DB hits: BLAST: gb:AAG01802.1; AF276772_1 (AF276772) cysteine desulfurase NifS; E=4e-53 swissprot:P12623; NIFS_ANASP NIFS PROTEIN ----- pir: C34443; E=2e-50 swissprot:Q43884; NIFS_ANAAZ NIFS PROTEIN ----- gb: AAA87249.1; E=3e-50 COG: yfhO; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; E=3e-51 PFAM: PF00266; Aminotransferase class-V; E=7.9e-47 NP_867827.1 PMID: 20196006 best DB hits: BLAST: gb:AAF57876.1; (AE003803) CG6564 gene product [Drosophila; E=0.010 embl:CAA96576.1; (Z72495) ZP2 [Carassius auratus]; E=0.47 NP_867829.1 best DB hits: BLAST: gb:AAA98756.1; (L29642) sensor kinase [Pseudomonas fluorescens]; E=2e-07 pir:S42745; nitrogen assimilation regulatory protein ntrC -; E=8e-07 swissprot:P45671; NTRC_AZOBR NITROGEN ASSIMILATION REGULATORY; E=4e-06 COG: VCA0142; COG2204 AAA superfamily ATPases with N-terminal receiver; E=7e-07 BB0570; COG0784 CheY-like receiver domains; E=6e-06 Rv0981; COG0745 Response regulators consisting of a CheY-like; E=9e-06 PFAM: PF01590; GAF domain; E=6.1e-16 PF00072; Response regulator receiver doma; E=7.9e-12 NP_867831.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide NP_867832.1 PMID: 8485162 best DB hits: BLAST: ddbj:BAB06503.1; (AP001516) methylenetetrahydrofolate; E=8e-74 swissprot:P54382; FOLD_BACSU FOLD BIFUNCTIONAL PROTEIN [INCLUDES:; E=2e-70 gb:AAF07929.1; AF186073_2 (AF186073) NMDMC isoform A [Drosophila; E=3e-70 COG: BH2784; COG0190 5,10-methylene-tetrahydrofolate dehydrogenase; E=8e-75 PFAM: PF00763; Tetrahydrofolate dehydrogenase/; E=4.3e-68 PF01262; Alanine dehydrogenase/pyridine; E=0.71 PF02882; Tetrahydrofolate dehydrogenase/; E=1.1e-101 NP_867833.1 PMID: 91151356 PMID: 91151356 PMID: 92235856 best DB hits: BLAST: pir:S21801; myosin heavy chain, neuronal [similarity] - rat; E=0.047 gb:AAD01409.1; (AF007557) Mrp22 [Streptococcus pyogenes]; E=0.082 pir:S57834; fcrA protein precursor - Streptococcus pyogenes -----; E=0.15 NP_867836.1 best DB hits: BLAST: pir:S75525; sensory transduction histidine kinase sll1228 -; E=3e-62 pir:S75136; sensory transduction histidine kinase slr2104 -; E=5e-60 pir:H82211; sensory box sensor histidine kinaseresponse regulator; E=1e-58 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=9e-60 PFAM: PF00989; PAS domain; E=0.025 PF00785; PAC motif; E=0.012 PF00989; PAS domain; E=7.5e-05 NP_867840.1 PMID: 7910580 PMID: 1572648 best DB hits: BLAST: embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=2e-44 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=2e-44 pdb:1E2S; P Chain P, Crystal Structure Of An Arylsulfatase A; E=2e-43 COG: aslA; COG3119 Arylsulfatase A and related enzymes; E=2e-27 PFAM: PF00884; Sulfatase; E=1.7e-47 PF01920; KE2 family protein; E=0.32 NP_867841.1 PMID: 96125720 PMID: 97158136 PMID: 2793833 best DB hits: BLAST: gb:AAB48319.1; (U29691) CDP-tyvelose epimerase [Yersinia; E=2e-29 swissprot:P14169; RFBE_SALTI CDP-TYVELOSE-2-EPIMERASE -----; E=3e-27 pir:B33604; rfbE protein - Salmonella sp; E=7e-26 COG: HI0873; COG1088 dTDP-D-glucose 4,6-dehydratase; E=5e-19 BH3649; COG0451 Nucleoside-diphosphate-sugar epimerases; E=1e-14 PH0414; COG1088 dTDP-D-glucose 4,6-dehydratase; E=1e-14 PFAM: PF01370; NAD dependent epimerase/dehydratase; E=0.0012 NP_867844.1 PMID: 2666400 best DB hits: BLAST: swissprot:P14377; HYDH_ECOLI SENSOR PROTEIN HYDH ----- pir:; E=5e-19 gb:AAG59200.1; AE005632_1 (AE005632) sensor kinase for HydG,; E=6e-18 swissprot:P07168; VIRA_AGRT6 WIDE HOST RANGE VIRA PROTEIN (WHR; E=6e-18 COG: hydH; COG0642 Sensory transduction histidine kinases; E=5e-20 PFAM: PF00512; His Kinase A (phosphoacceptor) doma; E=1.1e-06 PF02518; Histidine kinase-, DNA gyrase B-, p; E=4e-35 NP_867845.1 PMID: 99402746 PMID: 10473412 best DB hits: BLAST: ddbj:BAA20094.1; (D78338) L-proline 4-hydroxylase; E=1e-10 gb:AAF54534.2; (AE003688) CG14688 gene product [Drosophila; E=3e-07 ddbj:BAA75924.1; (D73371) epoxidase subunit A [Penicillium; E=3e-06 NP_867846.1 best DB hits: BLAST: pir:B75025; NADH-dependent dyhydrogenase related protein PAB1139 -; E=2e-11 pir:E71201; probable glucose-fructose oxidoreductase - Pyrococcus; E=8e-10 gb:AAC01706.1; (AF040570) unknown [Amycolatopsis mediterranei]; E=2e-09 COG: PAB1139; COG0673 Predicted dehydrogenases and related proteins; E=2e-12 PFAM: PF01408; Oxidoreductase, NAD-bin; E=3.2e-10 PF02894; Oxidoreductase, C-termi; E=3.4e-05 NP_867847.1 PMID: 11932238 best DB hits: BLAST: gb:AAD38597.1; AF145622_1 (AF145622) BcDNA.GH04245 [Drosophila; E=6e-08 gb:AAG22339.1; (AE003787) Ogt gene product [alt 3] [Drosophila; E=6e-08 swissprot:P56558; OGT1_RAT UDP-N-ACETYLGLUCOSAMINE--PEPTIDE; E=9e-08 COG: MTH72; COG0457 TPR-repeat-containing proteins; E=9e-07 PFAM: PF00515; TPR Domain; E=0.017 PF00671; Iron/Ascorbate oxidoreductase; E=0.67 PF00515; TPR Domain; E=0.21 NP_867848.1 PMID: 98065943 PMID: 9403685 PMID: 8997703 best DB hits: BLAST: pir:H70121; methanol dehydrogenase regulator (moxR) homolog - Lyme; E=2e-65 embl:CAA65298.1; (X96434) moxR [Borrelia burgdorferi] -----; E=3e-63 pir:C83106; conserved hypothetical protein PA4322 [imported] -; E=1e-61 COG: BB0176; COG0714 MoxR-like ATPases; E=2e-66 PFAM: PF00004; ATPase associated with; E=1.1e-05 PF02223; Thymidylate kinase; E=0.47 PF01078; Magnesium chelatase, subunit; E=3.9e-08 NP_867849.1 PMID: 97061201 best DB hits: BLAST: pir:S75346; hypothetical protein slr2013 - Synechocystis sp. (strain; E=3e-11 pir:D83106; hypothetical protein PA4323 [imported] - Pseudomonas; E=1e-10 embl:CAB90930.1; (AL355774) lipoprotein [Streptomyces; E=1e-09 COG: slr2013; COG1721 Uncharacterized ACR; E=3e-12 PFAM: PF01882; Protein of unknown function DUF58; E=2.5e-18 NP_867850.1 PMID: 11932238 NP_867851.1 PMID: 11932238 PMID: 96127529 PMID: 8590279 best DB hits: BLAST: swissprot:Q55874; Y103_SYNY3 HYPOTHETICAL 45.8 KD PROTEIN SLL0103; E=5e-12 gb:AAF13350.1; AF121336_1 (AF121336) unknown [Eufolliculina; E=4e-11 embl:CAB75310.1; (AL139164) lipoprotein [Streptomyces; E=1e-10 COG: sll0103; COG2304 Protein containing von Willebrand factor (vWF) type; E=5e-13 yfbK; COG2304 Protein containing von Willebrand factor (vWF) type A; E=2e-09 DRA0331; COG2304 Protein containing von Willebrand factor (vWF) type; E=0.003 PFAM: PF00092; von Willebrand factor type A domain; E=0.024 NP_867852.1 PMID: 93211444 NP_867854.1 PMID: 94281248 PMID: 8011666 PMID: 97419514 PMID: 9274029 best DB hits: BLAST: swissprot:P40407; YBBC_BACSU HYPOTHETICAL 46.0 KDA PROTEIN IN; E=6e-75 ddbj:BAB04393.1; (AP001509) BH0674~unknown conserved protein; E=3e-71 pir:G81651; conserved hypothetical protein TC0894 [imported] -; E=5e-47 NP_867855.1 PMID: 97000351 PMID: 8559252 best DB hits: BLAST: embl:CAC16517.1; (AL450223) integral membrane transport; E=3e-41 pir:A82432; sodiumsolute symporter VCA0667 [imported] - Vibrio; E=4e-26 pir:S75887; hypothetical protein - Synechocystis sp. (strain PCC; E=2e-25 COG: VCA0667; COG0591 Na+/proline, Na+/panthothenate symporters and; E=4e-27 yidK; COG0591 Na+/proline, Na+/panthothenate symporters and related; E=2e-06 PA0287; COG0591 Na+/proline, Na+/panthothenate symporters and; E=2e-06 PFAM: PF00474; Sodium:solute symporter family; E=1.6e-20 NP_867856.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway NP_867857.1 best DB hits: BLAST: gb:AAF19757.1; AC009917_16 (AC009917) F26G16.16 [Arabidopsis; E=7e-24 embl:CAB71200.1; (AL138538) kinase [Streptomyces; E=6e-20 gb:AAF55174.1; (AE003708) CG6218 gene product [Drosophila; E=8e-12 COG: Ta0122; COG2971 Uncharacterized BCR; E=2e-06 NP_867860.1 best DB hits: PFAM: PF01841; Transglutaminase-like superfam; E=0.039 NP_867863.1 PMID: 2250030 NP_867867.1 PMID: 11930014 NP_867869.1 PMID: 20406833 best DB hits: BLAST: pir:A82284; conserved hypothetical protein VC0762 [imported] -; E=0.029 pir:T29127; hypothetical protein SC1F2.18 - Streptomyces coelicolor; E=0.18 pir:H69064; serinethreonine protein kinase related protein -; E=0.49 COG: VC0762; COG1520 Uncharacterized proteins of WD40-like repeat family; E=0.003 PFAM: PF01011; PQQ enzyme repeat; E=0.054 NP_867871.1 PMID: 98037514 best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=0.16 NP_867875.1 PMID: 99215588 PMID: 6356036 best DB hits: BLAST: swissprot:O67422; METF_AQUAE 5,10-METHYLENETETRAHYDROFOLATE; E=1e-57 pir:T47821; methylenetetrahydrofolate reductase MTHFR1 - Arabidopsis; E=6e-50 gb:AAD51733.1; AF174486_1 (AF174486) methylenetetrahydrofolate; E=6e-48 COG: aq_1429; COG0685 5,10-methylenetetrahydrofolate reductase; E=1e-58 PFAM: PF02219; Methylenetetrahydrofolate reductase; E=2.9e-97 NP_867877.1 PMID: 98007868 PMID: 99047670 best DB hits: BLAST: gb:AAF01812.1; AF187532_8 (AF187532) SnoK [Streptomyces nogalater]; E=1e-09 gb:AAD50521.1; (U25130) syringomycin biosynthesis enzyme 2; E=1e-09 gb:AAC71711.1; (AF061267) alpha-ketoglutarate-dependent; E=1e-07 NP_867880.1 PMID: 11823852 NP_867882.1 best DB hits: BLAST: swissprot:P70960; YWMC_BACSU HYPOTHETICAL 24.5 KDA PROTEIN IN; E=3e-05 embl:CAB75310.1; (AL139164) lipoprotein [Streptomyces; E=4e-05 swissprot:Q55874; Y103_SYNY3 HYPOTHETICAL 45.8 KD PROTEIN SLL0103; E=6e-05 COG: BS_ywmC; COG2304 Protein containing von Willebrand factor (vWF) type; E=3e-06 VCA0172; COG3035 Uncharacterized BCR; E=3e-05 PFAM: PF00092; von Willebrand factor type A domain; E=0.013 NP_867884.1 PMID: 1755850 PMID: 8001980 PMID: 1522213 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=1e-31 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=4e-30 embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=8e-28 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=3e-26 PFAM: PF00884; Sulfatase; E=7.7e-45 NP_867885.1 PMID: 97288094 best DB hits: BLAST: pir:B75555; probable lipaseesterase - Deinococcus radiodurans; E=1e-14 pir:B70961; probable esterase - Mycobacterium tuberculosis (strain; E=1e-13 pir:H70731; probable esterase - Mycobacterium tuberculosis (strain; E=2e-08 COG: DR0133; COG0657 Acetyl esterase; E=1e-15 APE2441; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; E=1e-04 Rv1399c; COG0657 Acetyl esterase; E=0.001 NP_867887.1 PMID: 8437592 best DB hits: BLAST: swissprot:Q03046; CEFD_NOCLA ISOPENICILLIN N EPIMERASE -----; E=8e-34 ddbj:BAA96579.1; (AP002480) ESTs AU091298(C61241),C28476(C61241); E=2e-31 swissprot:P18549; CEFD_STRCL ISOPENICILLIN N EPIMERASE -----; E=6e-31 COG: csdB; COG0520 Selenocysteine lyase; E=3e-15 VC0748; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; E=1e-07 XF1473; COG0520 Selenocysteine lyase; E=2e-07 PFAM: PF00266; Aminotransferase class-V; E=1.3e-12 NP_867888.1 PMID: 11743193 NP_867892.1 PMID: 96102858 best DB hits: BLAST: swissprot:P55044; FPG_NEIMB FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE; E=2e-29 swissprot:P95744; FPG_SYNEN FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE; E=6e-29 prf:2204218A; formamidopyrimidine-DNA glycosylase [Neisseria; E=7e-28 COG: NMB1295; COG0266 Formamidopyrimidine-DNA glycosylase; E=2e-30 PFAM: PF01149; Formamidopyrimidine-DNA glycos; E=6.4e-14 NP_867893.1 PMID: 99287316 best DB hits: BLAST: pir:G72396; 6-phosphofructokinase, pyrophosphate-dependent -; E=1e-36 pir:S54978; 6-phosphofructokinase (EC 2.7.1.11),; E=9e-32 gb:AAA85791.1; (U11733) pyrophosphate-dependent; E=1e-31 COG: TM0289; COG0205 6-phosphofructokinase; E=1e-37 PFAM: PF00365; Phosphofructokinase; E=0.0021 NP_867894.1 PMID: 11889109 best DB hits: BLAST: pir:F64553; hypothetical protein HP0270 - Helicobacter pylori; E=6e-07 pir:F71953; hypothetical protein jhp0255 - Helicobacter pylori; E=6e-07 swissprot:Q9ZE57; Y090_RICPR HYPOTHETICAL PROTEIN RP090 -----; E=8e-07 COG: jhp0255; COG2121 Uncharacterized BCR; E=6e-08 PFAM: PF01553; Acyltransferase; E=0.068 NP_867896.1 PMID: 11727819 best DB hits: BLAST: gb:AAG40471.1; (AF216382) global regulator [Legionella; E=4e-10 gb:AAK03372.1; (AE006168) CsrA [Pasteurella multocida]; E=8e-09 swissprot:Q9WY93; CSRA_THEMA CARBON STORAGE REGULATOR HOMOLOG; E=6e-08 COG: TM0251; COG1551 Carbon storage regulator (could also regulate; E=6e-09 PFAM: PF02599; Carbon storage regulator; E=2.5e-19 NP_867897.1 PMID: 8346225 best DB hits: BLAST: swissprot:Q06065; ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY; E=2e-88 pir:F71315; probable response regulatory protein (atoC) - syphilis; E=6e-87 gb:AAF18103.1; AF204400_3 (AF204400) FrgC [Myxococcus xanthus]; E=5e-82 COG: atoC; COG2204 AAA superfamily ATPases with N-terminal receiver; E=2e-89 PFAM: PF00072; Response regulator receiver doma; E=3.9e-32 PF00005; ABC transporter; E=0.86 PF00004; ATPase associated with va; E=5.1e-06 NP_867898.1 PMID: 10075431 best DB hits: BLAST: pir:E71057; probable thiamin biosynthesis protein - Pyrococcus; E=4e-45 pir:C75087; hydroxymethylpyrimidine phosphate kinase (thid) PAB1646; E=2e-44 pir:F75613; phosphomethylpyrimidine kinase - Deinococcus radiodurans; E=5e-43 COG: PH1155_1; COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine; E=4e-46 thiD; COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; E=3e-42 NMB1616; COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine; E=3e-41 PFAM: PF01031; Dynamin central region; E=0.41 PF00294; pfkB family carbohydrate kinase; E=7.7e-08 NP_867900.1 PMID: 99411980 PMID: 99184645 PMID: 99356711 PMID: 99209008 PMID: 99184646 PMID: 20263314 best DB hits: BLAST: ddbj:BAB06531.1; (AP001516) lipoate protein ligase [Bacillus; E=3e-24 pir:D69959; conserved hypothetical protein yqhM - Bacillus subtilis; E=8e-22 pir:C72462; hypothetical protein APE2342 - Aeropyrum pernix (strain; E=8e-17 COG: BH2812; COG0095 Lipoate-protein ligase A; E=3e-25 PFAM: PF02539; Lipoate-protein ligase A; E=1.4e-11 NP_867901.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein NP_867902.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein NP_867903.1 PMID: 1802033 PMID: 8375392 PMID: 8219277 best DB hits: BLAST: swissprot:Q9WY55; GCSH_THEMA PROBABLE GLYCINE CLEAVAGE SYSTEM H; E=6e-15 swissprot:P23884; GCSH_ECOLI GLYCINE CLEAVAGE SYSTEM H PROTEIN; E=3e-14 gb:AAC61829.1; (AC004667) glycine decarboxylase complex H-protein; E=3e-14 COG: TM0212; COG0509 Glycine cleavage system H protein (lipoate-binding); E=6e-16 VNG1605G; COG0509 Glycine cleavage system H protein; E=4e-14 VCA0277; COG0509 Glycine cleavage system H protein (lipoate-binding); E=8e-14 PFAM: PF01597; Glycine cleavage H-protein; E=9.4e-39 NP_867904.1 PMID: 8165246 best DB hits: BLAST: swissprot:O86567; GCST_STRCO PROBABLE AMINOMETHYLTRANSFERASE; E=6e-67 swissprot:P54378; GCST_BACSU PROBABLE AMINOMETHYLTRANSFERASE; E=1e-61 swissprot:Q9K934; GCST_BACHD PROBABLE AMINOMETHYLTRANSFERASE; E=2e-59 COG: BS_yqhI; COG0404 Glycine cleavage system T protein; E=1e-62 PFAM: PF01571; Glycine cleavage T-protein (aminomet; E=7.5e-102 NP_867906.1 PMID: 96178988 best DB hits: BLAST: pir:D75377; probable proteinase - Deinococcus radiodurans (strain; E=1e-172 gb:AAC98910.1; (AF028721) protease [Rhodothermus sp. 'ITI 518']; E=5e-37 pir:C82309; probable insulinase-type proteinase VC0554 [imported] -; E=2e-36 COG: DR1598; COG0612 Predicted Zn-dependent peptidases; E=1e-173 PFAM: PF00675; Insulinase (Peptidase M; E=3e-15 NP_867907.1 best DB hits: BLAST: embl:CAA09913.1; (AJ012090) ferredoxin [Xanthobacter sp. Py2]; E=7e-06 pir:B83424; assimilatory nitrite reductase small subunit PA1780; E=8e-06 gb:AAD46364.1; AF161183_4 (AF161183) PrnD [Burkholderia cepacia]; E=3e-04 COG: PA1780; COG2146 Ferredoxin subunits of nitrite reductase and; E=8e-07 PFAM: PF00355; Rieske [2Fe-2S] domain; E=1.7e-15 NP_867910.1 best DB hits: BLAST: pir:C82396; transcriptional regulator MarR family VCA0955 [imported] -; E=3e-04 embl:CAB95985.1; (AL360034) MarR-family regulatory; E=4e-04 gb:AAD05186.1; (AF110185) unknown [Burkholderia pseudomallei]; E=8e-04 COG: VCA0955; COG1846 Transcriptional regulators; E=3e-05 PFAM: PF01047; MarR family; E=5.2e-13 NP_867911.1 PMID: 92267380 best DB hits: BLAST: pir:JC1118; alkyl sulfatase (EC 3.1.6.-) - Pseudomonas sp -----; E=2e-61 pir:G83552; probable beta-lactamase PA0740 [imported] - Pseudomonas; E=3e-48 embl:CAA99186.1; (Z74906) ORF YOL164w [Saccharomyces cerevisiae]; E=4e-43 COG: PA0740; COG2015 Alkyl sulfatase and related hydrolases; E=2e-49 aq_1798; COG0491 Zn-dependent hydrolases, including glyoxylases; E=2e-07 PFAM: PF00753; Metallo-beta-lactamase superfamil; E=5.2e-32 PF02151; UvrB/uvrC motif; E=0.24 NP_867913.1 PMID: 1541262 best DB hits: BLAST: swissprot:O86528; SYE_STRCO GLUTAMYL-TRNA SYNTHETASE; E=4e-74 ddbj:BAB03828.1; (AP001507) glutamyl-tRNA synthetase [Bacillus; E=2e-65 swissprot:Q9X172; SYE1_THEMA GLUTAMYL-TRNA SYNTHETASE 1; E=3e-65 COG: BH0109; COG0008 Glutamyl- and glutaminyl-tRNA synthetases; E=2e-66 PFAM: PF00749; tRNA synthetases class I (E and; E=1.3e-102 NP_867915.1 best DB hits: BLAST: pir:T23334; hypothetical protein K04H8.3 - Caenorhabditis elegans; E=0.53 PFAM: PF02321; Outer membrane efflux protein; E=0.0021 NP_867917.1 PMID: 98044033 best DB hits: BLAST: pir:C69985; probable DNA-dependent DNA polymerase beta chain yshC -; E=0.23 ddbj:BAB06826.1; (AP001517) DNA-dependent DNA polymerase beta; E=0.41 PFAM: PF02231; PHP domain N-terminal region; E=0.00015 NP_867920.2 PMID: 2828880 best DB hits: BLAST: pir:A65018; hypothetical protein b2434 - Escherichia coli (strain; E=2e-19 gb:AAG57552.1; AE005473_7 (AE005473) Z3699 gene product; E=3e-19 pir:F82455; probable acetyltransferase VCA0470 [imported] - Vibrio; E=3e-10 COG: ypeA; COG0456 Acetyltransferases; E=2e-20 VNG1215G; COG0454 Histone acetyltransferase HPA2 and related; E=1e-04 PA4534; COG0456 Acetyltransferases; E=1e-04 PFAM: PF00583; Acetyltransferase (GNAT) family; E=1.7e-26 NP_867921.1 PMID: 99120557 best DB hits: BLAST: pir:G71971; hypothetical protein jhp0125 - Helicobacter pylori; E=9e-04 pir:T36430; hypothetical protein SCF43A.07 - Streptomyces coelicolor; E=0.002 pir:A64537; hypothetical protein HP0137 - Helicobacter pylori; E=0.003 COG: jhp0125; COG1556 Uncharacterized ACR; E=8e-05 APE0258; COG1139 Uncharacterized conserved protein containing a; E=0.007 ykgG; COG1556 Uncharacterized ACR; E=0.009 PFAM: PF02589; Uncharacterized ACR, YkgG family COG; E=2.3e-07 NP_867922.1 PMID: 97426617 PMID: 9278503 best DB hits: BLAST: swissprot:P77536; YKGF_ECOLI HYPOTHETICAL 53.1 KD PROTEIN IN; E=5e-89 gb:AAG54641.1; AE005208_9 (AE005208) orf, hypothetical protein; E=9e-89 pir:T36429; probable iron-sulfur protein SCF43A.06 [similarity] -; E=1e-86 COG: ykgF; COG1139 Uncharacterized conserved protein containing a; E=5e-90 AF0506; COG0247 Fe-S oxidoreductases; E=2e-05 PFAM: PF00037; 4Fe-4S binding domain; E=0.43 NP_867923.1 best DB hits: BLAST: pir:T36428; hypothetical protein SCF43A.05 - Streptomyces coelicolor; E=3e-48 ddbj:BAB05551.1; (AP001513) glycolate oxidase [Bacillus; E=1e-39 pir:H75337; fumarate reductase-related protein - Deinococcus; E=7e-39 COG: BH1832; COG0247 Fe-S oxidoreductases; E=1e-40 MJ0863; COG2048 Heterodisulfide reductase subunit B; E=1e-05 MJ0092_2; COG0247 Fe-S oxidoreductases; E=7e-05 PFAM: PF02754; Domain of unknown function (DUF224); E=9.2e-10 NP_867925.1 best DB hits: BLAST: swissprot:Q57699; FER5_METJA FERREDOXIN MJ0251 -----; E=8e-10 pir:B72286; ferredoxin - Thermotoga maritima (strain MSB8) -----; E=9e-09 pir:B72206; ferredoxin - Thermotoga maritima (strain MSB8) -----; E=1e-05 COG: MJ0251; COG1146 Ferredoxin 3; E=7e-11 TM1292; COG1149 MinD superfamily P-loop ATPase containing an; E=0.002 AF0427; COG1146 Ferredoxin 3; E=0.004 PFAM: PF00037; 4Fe-4S binding domain; E=0.0025 NP_867926.2 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle NP_867927.1 PMID: 9658018 best DB hits: BLAST: swissprot:P39344; IDNT_ECOLI GNT-II SYSTEM L-IDONATE TRANSPORTER; E=1e-14 ddbj:BAA83912.1; (AB024550) GNTP [Bacillus halodurans] -----; E=1e-14 swissprot:Q9ZIJ1; GNUT_PSEAE GLUCONATE PERMEASE ----- pir:; E=4e-12 COG: BH0805; COG2610 H+/gluconate symporter and related permeases; E=1e-15 PFAM: PF02447; GntP family permease; E=2.5e-34 NP_867929.1 best DB hits: BLAST: gb:AAF34762.1; AF228345_1 (AF228345) unknown [Listeria; E=6e-93 ddbj:BAB06097.1; (AP001515) BH2378~unknown conserved protein; E=2e-91 pir:F69884; conserved hypothetical protein ymdA - Bacillus subtilis; E=1e-89 COG: BH2378; COG1418 Predicted HD superfamily hydrolase; E=2e-92 PFAM: PF00261; Tropomyosin; E=0.57 PF00013; KH domain; E=6.3e-07 PF01966; HD domain; E=3.4e-21 NP_867931.1 PMID: 99061957 best DB hits: BLAST: pir:T31465; cell cycle protein homolog mesJ - Heliobacillus mobilis; E=1e-31 swissprot:Q9WZ48; Y579_THEMA HYPOTHETICAL PROTEIN TM0579 -----; E=7e-24 pir:F75424; probable cell cycle protein MesJcytosine; E=2e-21 COG: TM0579; COG0037 Predicted ATPase of the PP-loop superfamily; E=6e-25 mesJ; COG0037 Predicted ATPase of the PP-loop superfamily implicated; E=1e-17 TP0373; COG0037 Predicted ATPase of the PP-loop superfamily; E=6e-17 PFAM: PF01171; Uncharacterized protein family UPF00; E=0.044 NP_867934.1 best DB hits: BLAST: pir:C69049; ABC transporter (ATP-binding protein) - Methanobacterium; E=5e-47 swissprot:P46903; NATA_BACSU ATP-BINDING TRANSPORT PROTEIN NATA; E=2e-46 pir:F82572; sodium ABC transporter ATP-binding protein XF2329; E=5e-46 COG: MTH1370; COG1131 ABC-type multidrug transport system, ATPase; E=5e-48 PFAM: PF02223; Thymidylate kinase; E=0.42 PF00005; ABC transporter; E=1.6e-61 NP_867935.1 best DB hits: BLAST: pir:A75459; sodium extrusion protein NatB - Deinococcus radiodurans; E=2e-15 swissprot:P46904; NATB_BACSU PROTEIN NATB ----- pir: B69666; E=1e-10 ddbj:BAA22237.1; (AB000617) NatB [Bacillus subtilis]; E=5e-05 COG: DR0926; COG1668 ATP-dependent Na+ efflux pump membrane component; E=1e-16 BS_ydiL; COG1266 Predicted metal-dependent membrane protease; E=1e-04 PFAM: PF02517; CAAX amino terminal protease; E=1.1e-19 NP_867939.1 best DB hits: BLAST: pir:S74796; hypothetical protein sll1020 - Synechocystis sp. (strain; E=2e-34 pir:A75176; dolichyl-phosphate mannose synthase related protein; E=1e-20 pir:D71038; hypothetical protein PH1596 - Pyrococcus horikoshii; E=2e-19 COG: sll1020; COG0463 Glycosyltransferases involved in cell wall; E=2e-35 PFAM: PF00535; Glycosyl transferase; E=1.3e-41 NP_867946.1 PMID: 8661927 PMID: 3133356 best DB hits: BLAST: swissprot:P80040; MDH_CHLAU MALATE DEHYDROGENASE ----- embl:; E=3e-86 swissprot:Q9X4K8; MDH_BACTC MALATE DEHYDROGENASE ----- gb:; E=1e-83 swissprot:Q59202; MDH_BACIS MALATE DEHYDROGENASE ----- pir:; E=1e-83 COG: BH3158; COG0039 Malate/lactate dehydrogenases; E=3e-81 PFAM: PF00984; UDP-glucose/GDP-mannose dehydro; E=0.28 PF00056; lactate/malate dehydrogenase, N; E=1.3e-43 PF02866; lactate/malate dehydrogenase, a; E=1.5e-41 NP_867948.1 best DB hits: PFAM: PF02432; Fimbrial, major and minor subuni; E=0.17 NP_867949.1 PMID: 1400209 best DB hits: BLAST: swissprot:P73807; HIS8_SYNY3 HISTIDINOL-PHOSPHATE AMINOTRANSFERASE; E=1e-56 swissprot:P45358; HIS8_ACEXY HISTIDINOL-PHOSPHATE AMINOTRANSFERASE; E=2e-52 gb:AAK00147.1; AF222753_2 (AF222753) aminotransferase; E=2e-43 COG: sll1958; COG0079 Histidinol-phosphate aminotransferase/Tyrosine; E=1e-57 PFAM: PF00155; Aminotransferase class-I; E=5.1e-06 PF00222; Aminotransferase class-II; E=1.3e-17 NP_867950.1 best DB hits: BLAST: ddbj:BAB07300.1; (AP001519) imidazoleglycerol-phosphate; E=3e-49 swissprot:O33564; HIS7_RHOSH IMIDAZOLEGLYCEROL-PHOSPHATE; E=1e-48 swissprot:P34047; HIS7_ARATH IMIDAZOLEGLYCEROL-PHOSPHATE; E=2e-48 COG: BH3581; COG0131 Imidazoleglycerol-phosphate dehydratase; E=3e-50 PFAM: PF00475; Imidazoleglycerol-phosphate dehydrat; E=7e-96 NP_867951.1 best DB hits: BLAST: swissprot:O83845; Y875_TREPA HYPOTHETICAL PROTEIN TP0875 -----; E=1e-09 pir:H72229; conserved hypothetical protein - Thermotoga maritima; E=2e-08 ddbj:BAB04264.1; (AP001508) BH0545~unknown conserved protein; E=1e-05 COG: TP0875; COG0802 Predicted ATPase or kinase; E=1e-10 PFAM: PF02367; Uncharacterised P-loop hydrolase UPF; E=3.9e-22 NP_867955.1 PMID: 8547819 best DB hits: BLAST: swissprot:P45458; MASY_SOYBN MALATE SYNTHASE, GLYOXYSOMAL (MS); E=0.60 NP_867957.1 best DB hits: BLAST: ddbj:BAB05075.1; (AP001511) BH1356~unknown conserved protein; E=1e-25 swissprot:P54465; YQEZ_BACSU HYPOTHETICAL 46.5 KD PROTEIN IN; E=6e-22 gb:AAB89465.1; (AE000979) nodulation protein NfeD (nfeD); E=8e-04 COG: BH1356_1; COG1030 Periplasmic serine proteases (ClpP class); E=1e-17 BH1356_2; COG1585 Membrane protein implicated in regulation of; E=1e-07 AF1781_1; COG1030 Periplasmic serine proteases (ClpP class); E=7e-05 PFAM: PF01957; Protein of unknown function DUF107; E=0.53 NP_867958.1 PMID: 7896723 best DB hits: BLAST: gb:AAB90400.1; (AE001046) TRK potassium uptake system protein; E=8e-61 pir:G82037; potassium uptake protein TrkH VC2756 [imported] - Vibrio; E=4e-49 swissprot:P44843; TRKH_HAEIN TRK SYSTEM POTASSIUM UPTAKE PROTEIN; E=1e-46 COG: AF0839; COG0168 Trk-type K+ transport systems, membrane components; E=8e-62 NMB0661_2; COG0168 Trk-type K+ transport systems, membrane; E=1e-36 PA3210; COG0168 Trk-type K+ transport systems, membrane components; E=1e-36 PFAM: PF02386; Sodium transport protein; E=1.1e-54 NP_867959.1 PMID: 8407791 best DB hits: BLAST: pir:E83626; protocatechuate 3,4-dioxygenase, beta subunit PA0153; E=1e-14 pir:T35018; protocatechuate 3,4-dioxygenase beta chain -; E=1e-14 gb:AAF65837.1; AF253466_3 (AF253466) protocatechuate; E=3e-14 PFAM: PF00652; QXW lectin repeat; E=0.28 PF00775; Dioxygenase; E=3.6e-18 NP_867963.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_867966.1 PMID: 8063110 PMID: 8195067 PMID: 9808046 PMID: 11372197 best DB hits: BLAST: gb:AAD05531.1; (AF083240) c-type cytochrome precursor [Shewanella; E=0.74 swissprot:Q57142; C554_NITEU CYTOCHROME C-554 PRECURSOR (C554); E=0.84 NP_867968.1 best DB hits: BLAST: ddbj:BAB05140.1; (AP001512) BH1421~unknown conserved protein; E=0.16 NP_867973.1 PMID: 8361352 best DB hits: BLAST: pir:H69658; molybdopterin precursor biosynthesis moaB - Bacillus; E=9e-25 ddbj:BAB06741.1; (AP001517) molybdopterin precursor biosynthesis; E=4e-22 gb:AAG20033.1; (AE005084) molybdenum cofactor biosynthesis; E=7e-21 COG: BS_moaB; COG0521 Molybdopterin biosynthesis enzymes; E=9e-26 PFAM: PF00994; Molybdenum cofactor biosynthesi; E=0.062 NP_867974.1 PMID: 20175229 best DB hits: BLAST: ddbj:BAB03332.1; (AB035450) fructose specific permease; E=3e-07 pir:H69626; PTS fructose-specific enzyme IIBC component fruA -; E=5e-07 pir:B81941; probable regulatory protein NMA0946 [imported] -; E=9e-07 COG: BS_fruA_1; COG1762 Phosphotransferase system; E=5e-08 TP0755; COG1762 Phosphotransferase system mannitol/fructose-specific; E=6e-07 VC1826_1; COG1762 Phosphotransferase system; E=8e-07 NP_867999.1 PMID: 20175755 best DB hits: BLAST: embl:CAB72079.1; (AJ391284) hypothetical protein [Neisseria; E=0.028 pir:D81191; hypothetical protein NMB0509 [imported] - Neisseria; E=0.028 NP_868001.1 PMID: 11158351 best DB hits: BLAST: ddbj:BAA36466.1; (AB015053) serine protease homologue; E=1e-19 gb:AAF80995.1; (AF216702) PrtB [Pseudomonas fluorescens]; E=5e-19 pir:JC5568; serine proteinase h1 (EC 3.4.-.-) precursor - Serratia; E=4e-18 COG: PA3535_1; COG1404 Subtilisin-like serine proteases; E=3e-10 PFAM: PF02223; Thymidylate kinase; E=0.27 NP_868002.1 best DB hits: BLAST: pir:B70535; probable sulfatase (EC 3.1.6.-) atsD - Mycobacterium; E=7e-11 pir:E70533; probable sulfatase (EC 3.1.6.-) atsB - Mycobacterium; E=4e-08 pir:B70643; probable sulfatase (EC 3.1.6.-) atsA - Mycobacterium; E=0.22 COG: Rv0663; COG3119 Arylsulfatase A and related enzymes; E=7e-12 NP_868006.1 PMID: 20365717 best DB hits: BLAST: pir:H82841; conserved hypothetical protein XF0161 [imported] -; E=1e-06 gb:AAB48483.1; (U87814) PEST phosphatase interacting protein [Mus; E=0.060 embl:CAB99171.1; (AL390189) related to transport protein USO1; E=0.15 NP_868009.1 PMID: 7642487 best DB hits: BLAST: pir:E72348; conserved hypothetical protein - Thermotoga maritima; E=0.001 ddbj:BAB05844.1; (AP001514) transcriptional regulator of; E=0.006 swissprot:P06533; SINR_BACSU SINR PROTEIN ----- pir: B25159; E=0.010 COG: TM0656; COG1396 Predicted transcriptional regulators; E=1e-04 PFAM: PF01381; Helix-turn-helix; E=1.2e-07 NP_868012.1 PMID: 21101824 best DB hits: BLAST: gb:AAG60904.1; AF322013_23 (AF322013) ID479 [Bradyrhizobium; E=2e-04 NP_868015.1 PMID: 11157235 PMID: 10347025 PMID: 10966413 best DB hits: BLAST: ddbj:BAB21059.1; (AB037178) xanthan lyase [Bacillus sp. GL1]; E=5e-08 gb:AAG24953.1; AF242413_1 (AF242413) XalA [Paenibacillus; E=3e-07 gb:AAG42262.1; AF318176_1 (AF318176) xanthan lyase XalB; E=0.003 NP_868016.1 best DB hits: BLAST: pir:T32623; hypothetical protein F42A6.9 - Caenorhabditis elegans; E=0.39 NP_868017.1 PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=9e-25 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=2e-23 embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=4e-23 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=1e-21 PFAM: PF00884; Sulfatase; E=3.8e-39 NP_868019.1 PMID: 7744061 best DB hits: BLAST: swissprot:P51691; ARS_PSEAE ARYLSULFATASE (ARYL-SULFATE; E=2e-61 pir:S69336; arylsulfatase (EC 3.1.6.1) - Pseudomonas aeruginosa; E=2e-60 pir:E70533; probable sulfatase (EC 3.1.6.-) atsB - Mycobacterium; E=7e-53 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=2e-62 PFAM: PF00884; Sulfatase; E=3.2e-77 NP_868020.1 PMID: 97000351 best DB hits: BLAST: embl:CAB62685.1; (AL133422) membrane protein.; E=6e-12 pir:A49911; NADH oxidase (hydrogen peroxide-forming) (EC 1.6.-.-) -; E=0.008 swissprot:P26829; DHNA_BACSP NADH DEHYDROGENASE (ALKYL; E=0.024 PFAM: PF01134; Glucose inhibited division prote; E=1.1e-05 PF00070; Pyridine nucleotide-disulphide o; E=1.1e-05 PF02032; Phytoene dehydrogenase related e; E=0.43 NP_868021.1 PMID: 20363099 best DB hits: BLAST: ddbj:BAB01977.1; (AP002065) gene_id:T31J18.6~pir F71651~similar; E=0.23 NP_868022.1 PMID: 20416234 best DB hits: BLAST: embl:CAB53350.1; (AJ010260) NosR protein [Paracoccus; E=0.001 gb:AAD09156.1; (AF047429) regulatory protein NosR [Achromobacter; E=0.001 embl:CAC03728.1; (AJ297529) RnfG protein [Pseudomonas stutzeri; E=0.094 NP_868023.1 PMID: 9523018 PMID: 8418825 best DB hits: BLAST: swissprot:P40137; CYAA_STIAU ADENYLATE CYCLASE 1 (ATP; E=8e-24 pir:S74929; adenylate cyclase (EC 4.6.1.1) - Synechocystis sp.; E=1e-23 ddbj:BAA13997.1; (D89622) adenylate cyclase [Anabaena sp.]; E=4e-23 COG: sll0646; COG2114 Adenylate cyclase, family 3 (some proteins contain; E=1e-24 slr1991_2; COG2114 Adenylate cyclase, family 3 (some proteins; E=3e-08 Rv1625c; COG2114 Adenylate cyclase, family 3 (some proteins contain; E=4e-08 PFAM: PF00211; Adenylate and Guanylate cyclase; E=2.7e-39 NP_868024.1 PMID: 20150912 PMID: 97000351 best DB hits: BLAST: pir:B81402; hypothetical protein Cj0554 [imported] - Campylobacter; E=4e-57 embl:CAB56667.1; (AL121596) hypothetical protein SCF51A.15c; E=4e-54 NP_868026.1 PMID: 8921895 best DB hits: BLAST: swissprot:P44677; TOLB_HAEIN TOLB PROTEIN PRECURSOR ----- pir:; E=0.67 pir:JC5213; tolB protein - Haemophilus influenzae ----- gb:; E=0.72 NP_868028.1 PMID: 12024217 NP_868030.1 PMID: 7961470 best DB hits: BLAST: swissprot:Q44583; NCCH_ALCXX RNA POLYMERASE SIGMA FACTOR NCCH; E=6e-07 pir:H82073; RNA polymerase sigma-E factor VC2467 [imported] - Vibrio; E=3e-06 embl:CAB55345.1; (AJ010584) ECF sigma factor [Streptomyces; E=2e-05 COG: VC2467; COG1595 DNA-directed RNA polymerase specialized sigma; E=3e-07 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=9.7e-11 NP_868031.1 PMID: 7774814 best DB hits: BLAST: embl:CAB94054.1; (AL358672) serinethreonine-protein; E=3e-29 pir:T35491; probable serinethreonine-specific protein kinase pkaF -; E=1e-25 gb:AAF79944.1; AF233851_2 (AF233851) eukaryotic-type; E=1e-25 COG: Rv0015c; COG0515 Serine/threonine protein kinases; E=3e-26 PFAM: PF00069; Protein kinase domain; E=7.1e-37 NP_868033.1 PMID: 11759840 NP_868035.1 best DB hits: BLAST: pir:D75432; uroporphyrinogen decarboxylase - Deinococcus radiodurans; E=2e-74 swissprot:Q9RV96; DCUP_DEIRA UROPORPHYRINOGEN DECARBOXYLASE; E=2e-74 swissprot:O69861; DCUP_STRCO UROPORPHYRINOGEN DECARBOXYLASE; E=1e-73 COG: DR1133; COG0407 Uroporphyrinogen-III decarboxylase; E=2e-75 Rv0260c_1; COG1587 Uroporphyrinogen-III synthase; E=7e-12 PFAM: PF02602; Uroporphyrinogen-III synthase HemD; E=4.3e-13 PF01208; Uroporphyrinogen decarboxylase (URO-; E=5.6e-144 NP_868036.1 best DB hits: BLAST: pir:B69997; conserved hypothetical protein ytmQ - Bacillus subtilis; E=1e-15 pir:G82761; conserved hypothetical protein XF0784 [imported] -; E=3e-15 gb:AAK04847.1; AE006308_7 (AE006308) HYPOTHETICAL PROTEIN; E=1e-14 COG: BS_ytmQ; COG0220 Predicted S-adenosylmethionine-dependent; E=1e-16 PFAM: PF02390; methyltransferase; E=2e-41 NP_868037.1 PMID: 98263372 best DB hits: BLAST: pir:B83395; probable enoyl-CoA hydrataseisomerase PA2013 [imported]; E=4e-17 pir:D72628; probable 3-hydroxybutyryl-CoA dehydratase APE1484 -; E=7e-16 gb:AAC24330.1; (AF029714) PhaB [Pseudomonas putida]; E=3e-14 COG: PA2013; COG1024 Enoyl-CoA hydratase/carnithine racemase; E=4e-18 PFAM: PF00378; Enoyl-CoA hydratase/isomerase; E=5.7e-27 NP_868038.1 PMID: 20437337 best DB hits: BLAST: pir:D83184; conserved hypothetical protein PA3683 [imported] -; E=4e-42 pir:E82234; conserved hypothetical protein VC1165 [imported] -; E=9e-42 swissprot:P37348; YECE_ECOLI HYPOTHETICAL 31.5 KD PROTEIN IN; E=1e-39 COG: PA3683; COG1801 Uncharacterized ACR; E=4e-43 PFAM: PF01904; Protein of unknown function D; E=1.6e-11 NP_868040.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance NP_868041.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit NP_868042.1 PMID: 8070396 PMID: 11054294 best DB hits: BLAST: embl:CAB81852.1; (AL161691) elongation factor G [Streptomyces; E=1e-147 swissprot:O66428; EFG_AQUAE ELONGATION FACTOR G (EF-G) -----; E=1e-145 swissprot:P38525; EFG_THEMA ELONGATION FACTOR G (EF-G) -----; E=1e-145 COG: aq_001; COG0480 Translation elongation and release factors (GTPases); E=1e-146 jhp1118; COG0480 Translation elongation and release factors; E=1e-139 BH0131; COG0480 Translation elongation and release factors (GTPases); E=1e-138 PFAM: PF01894; Uncharacterised protein family UPF; E=0.082 PF00009; Elongation factor Tu family; E=3.4e-123 PF00679; Elongation factor G C-terminus; E=1.2e-42 NP_868043.1 PMID: 20406833 best DB hits: BLAST: pir:G82206; hypothetical protein VC1375 [imported] - Vibrio cholerae; E=9e-09 NP_868044.1 PMID: 8907187 PMID: 10029535 best DB hits: BLAST: pir:D70479; probable transaminase (EC 2.6.1.-) aspC2 [similarity] -; E=1e-111 pir:E83056; probable aminotransferase PA4715 [imported] -; E=1e-100 swissprot:P77434; YFDZ_ECOLI HYPOTHETICAL AMINOTRANSFERASE YFDZ; E=4e-97 COG: aq_2094; COG0436 PLP-dependent aminotransferases; E=1e-112 PFAM: PF00155; Aminotransferase class-I; E=7.9e-34 NP_868050.1 PMID: 7037196 PMID: 3892488 PMID: 7007073 best DB hits: BLAST: swissprot:P44378; RS10_HAEIN 30S RIBOSOMAL PROTEIN S10 -----; E=2e-26 pir:E81234; 30S ribosomal protein S10 NMB0140 [imported] - Neisseria; E=4e-25 swissprot:P48851; RS10_NEIGO 30S RIBOSOMAL PROTEIN S10 -----; E=6e-25 COG: HI0776; COG0051 Ribosomal protein S10; E=2e-27 PFAM: PF00338; Ribosomal protein S10p/S20e; E=2.8e-41 NP_868052.1 PMID: 3892488 PMID: 365579 best DB hits: BLAST: swissprot:P52860; RL3_THETH 50S RIBOSOMAL PROTEIN L3 -----; E=1e-47 embl:CAB82070.1; (AL161803) 50S ribosomal protein L3; E=7e-45 swissprot:P73320; RL3_SYNY3 50S RIBOSOMAL PROTEIN L3 -----; E=3e-42 COG: Rv0701; COG0087 Ribosomal protein L3; E=4e-43 PFAM: PF00297; Ribosomal protein L3; E=2.7e-71 NP_868053.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA NP_868054.1 PMID: 8790600 best DB hits: BLAST: swissprot:P55839; RL23_ACTAC 50S RIBOSOMAL PROTEIN L23 -----; E=1e-12 gb:AAK03497.1; (AE006177) RpL23 [Pasteurella multocida]; E=2e-12 pir:C83116; 50S ribosomal protein L23 PA4261 [imported] -; E=3e-12 COG: PA4261; COG0089 Ribosomal protein L23; E=3e-13 PFAM: PF00276; Ribosomal protein L23; E=6.9e-27 NP_868055.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation NP_868056.1 PMID: 3892488 PMID: 348496 PMID: 10094780 best DB hits: BLAST: pir:B82059; ribosomal protein S19 VC2592 [imported] - Vibrio; E=2e-23 swissprot:P02375; RS19_ECOLI 30S RIBOSOMAL PROTEIN S19 -----; E=2e-23 swissprot:P44385; RS19_HAEIN 30S RIBOSOMAL PROTEIN S19 -----; E=5e-23 COG: VC2592; COG0185 Ribosomal protein S19; E=2e-24 PFAM: PF00203; Ribosomal protein S19; E=3.7e-42 NP_868057.1 PMID: 3892488 PMID: 7007072 best DB hits: BLAST: pir:E81231; 50S ribosomal protein L22 NMB0147 [imported] - Neisseria; E=2e-17 swissprot:P02423; RL22_ECOLI 50S RIBOSOMAL PROTEIN L22 -----; E=9e-16 pir:A82059; ribosomal protein L22 VC2591 [imported] - Vibrio; E=3e-14 COG: NMB0147; COG0091 Ribosomal protein L22; E=2e-18 PFAM: PF00237; Ribosomal protein L22p/L17e; E=2.2e-31 NP_868058.1 PMID: 2222862 best DB hits: BLAST: swissprot:Q9Z9K8; RS3_BACHD 30S RIBOSOMAL PROTEIN S3 -----; E=4e-50 swissprot:O66437; RS3_AQUAE 30S RIBOSOMAL PROTEIN S3 -----; E=6e-50 pir:A81665; ribosomal protein S3 TC0809 [imported] - Chlamydia; E=1e-49 COG: BH0140; COG0092 Ribosomal protein S3; E=4e-51 PFAM: PF00417; Ribosomal protein S3, N-termin; E=1.2e-28 PF00013; KH domain; E=0.014 PF00189; Ribosomal protein S3, C-termin; E=4.1e-43 NP_868059.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e NP_868060.1 PMID: 4018095 best DB hits: BLAST: embl:CAB82078.1; (AL161803) 50S ribosomal protein L29; E=3e-04 swissprot:O32989; RL29_MYCLE 50S RIBOSOMAL PROTEIN L29 -----; E=4e-04 swissprot:P95057; RL29_MYCTU 50S RIBOSOMAL PROTEIN L29 -----; E=0.002 COG: Rv0709; COG0255 Ribosomal protein L29; E=2e-04 PFAM: PF00831; Ribosomal L29 protein; E=2e-14 NP_868061.1 PMID: 344065 best DB hits: BLAST: swissprot:P02373; RS17_ECOLI 30S RIBOSOMAL PROTEIN S17 -----; E=1e-14 pir:E82058; ribosomal protein S17 VC2587 [imported] - Vibrio; E=2e-13 swissprot:P46175; RS17_BUCAK 30S RIBOSOMAL PROTEIN S17 -----; E=2e-13 COG: rpsQ; COG0186 Ribosomal protein S17; E=1e-15 PFAM: PF00366; Ribosomal protein S17; E=5.2e-27 NP_868062.1 PMID: 2508062 PMID: 4018095 PMID: 8805509 best DB hits: BLAST: swissprot:P95062; RL14_MYCTU 50S RIBOSOMAL PROTEIN L14 -----; E=5e-32 swissprot:O32993; RL14_MYCLE 50S RIBOSOMAL PROTEIN L14 -----; E=5e-32 swissprot:Q9Z9K4; RL14_BACHD 50S RIBOSOMAL PROTEIN L14 -----; E=2e-31 COG: Rv0714; COG0093 Ribosomal protein L14; E=2e-32 PFAM: PF00238; Ribosomal protein L14p/L23e; E=2.6e-73 NP_868063.1 PMID: 4018095 best DB hits: BLAST: swissprot:Q9Z9K3; RL24_BACHD 50S RIBOSOMAL PROTEIN L24 -----; E=5e-15 swissprot:P04455; RL24_BACST 50S RIBOSOMAL PROTEIN L24 -----; E=4e-14 swissprot:P12876; RL24_BACSU 50S RIBOSOMAL PROTEIN L24 (BL23) (12; E=9e-14 COG: BH0145; COG0198 Ribosomal protein L24; E=5e-16 PFAM: PF00467; KOW motif; E=4.2e-18 NP_868064.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 NP_868065.1 best DB hits: BLAST: swissprot:Q9Z9K1; RS14_BACHD 30S RIBOSOMAL PROTEIN S14 -----; E=2e-09 swissprot:P24320; RS14_THETH 30S RIBOSOMAL PROTEIN S14 -----; E=8e-10 pir:S15440; ribosomal protein S14 - Thermus aquaticus (strain; E=9e-10 COG: CPn0937; COG0199 Ribosomal protein S14; E=2e-06 PFAM: PF00253; Ribosomal protein S14p/S29e; E=2.1e-27 NP_868066.1 PMID: 6806564 best DB hits: BLAST: swissprot:Q9Z9K0; RS8_BACHD 30S RIBOSOMAL PROTEIN S8 -----; E=2e-31 swissprot:P12879; RS8_BACSU 30S RIBOSOMAL PROTEIN S8 (BS8) -----; E=1e-30 pir:G69699; ribosomal protein S8 - Bacillus subtilis ----- ddbj:; E=4e-30 COG: BH0148; COG0096 Ribosomal protein S8; E=2e-32 PFAM: PF00410; Ribosomal protein S8; E=1.9e-63 NP_868067.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance NP_868068.1 PMID: 3542562 best DB hits: BLAST: swissprot:Q9ZAE3; RL18_THEMA 50S RIBOSOMAL PROTEIN L18 -----; E=4e-21 embl:CAA79793.1; (Z21677) ribosomal protein L18 [Thermotoga; E=4e-20 swissprot:O24704; RL18_SYNP6 50S RIBOSOMAL PROTEIN L18 -----; E=1e-19 COG: TM1484; COG0256 Ribosomal protein L18; E=4e-22 PFAM: PF00861; Ribosomal L18p/L5e family; E=3.7e-41 NP_868069.1 PMID: 6806564 PMID: 6363400 best DB hits: BLAST: swissprot:P21467; RS5_BACSU 30S RIBOSOMAL PROTEIN S5 (BS5) -----; E=1e-31 swissprot:Q9Z9J7; RS5_BACHD 30S RIBOSOMAL PROTEIN S5 -----; E=1e-31 pir:A81233; 30s ribosomal protein S5 NMB0159 [imported] - Neisseria; E=3e-31 COG: BS_rpsE; COG0098 Ribosomal protein S5; E=9e-33 PFAM: PF00333; Ribosomal protein S5; E=1.7e-62 NP_868070.1 PMID: 4018095 best DB hits: BLAST: swissprot:O67561; RL15_AQUAE 50S RIBOSOMAL PROTEIN L15 -----; E=3e-27 swissprot:Q9X1J0; RL15_THEMA 50S RIBOSOMAL PROTEIN L15 -----; E=1e-25 swissprot:O83237; RL15_TREPA 50S RIBOSOMAL PROTEIN L15 -----; E=1e-23 COG: aq_1642; COG0200 Ribosomal protein L15; E=3e-28 PFAM: PF01305; Ribosomal protein L15 amino te; E=5.2e-35 PF00256; Ribosomal protein L15; E=1.8e-19 NP_868071.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase NP_868072.1 PMID: 9300823 PMID: 1554691 PMID: 9715904 best DB hits: BLAST: swissprot:O24706; KAD_SYNP6 ADENYLATE KINASE (ATP-AMP; E=3e-26 swissprot:P43414; KAD_STRCO ADENYLATE KINASE (ATP-AMP; E=3e-26 swissprot:P27142; KAD_BACST ADENYLATE KINASE (ATP-AMP; E=8e-26 COG: Rv0733; COG0563 Adenylate kinase and related kinases; E=3e-26 PFAM: PF02223; Thymidylate kinase; E=0.27 PF01202; Shikimate kinase; E=0.041 PF01712; Deoxynucleoside kinase; E=0.27 NP_868073.1 PMID: 97061201 best DB hits: BLAST: pir:S75290; hypothetical protein sll1289 - Synechocystis sp. (strain; E=3e-20 pir:G70687; hypothetical protein Rv1732c - Mycobacterium; E=1e-17 gb:AAF87891.1; AC015447_1 (AC015447) Hypothetical protein; E=1e-15 COG: sll1289; COG0526 Thiol-disulfide isomerase and thioredoxins; E=3e-21 NP_868074.1 PMID: 8098033 best DB hits: BLAST: pir:D81057; GDSL lipase NMB1674 [imported] -; E=4e-13 gb:AAG54851.1; AE005230_11 (AE005230) acyl-CoA thioesterase I; E=9e-11 swissprot:P29679; TESA_ECOLI ACYL-COA THIOESTERASE I PRECURSOR; E=2e-10 COG: NMB1674; COG2755 Lysophospholipase L1 and related esterases; E=3e-14 PFAM: PF00657; Lipase/Acylhydrolase with GDSL-li; E=0.59 NP_868075.1 PMID: 12004073 NP_868076.1 PMID: 7910580 PMID: 1572648 best DB hits: BLAST: gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=4e-58 embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=4e-58 pdb:1E2S; P Chain P, Crystal Structure Of An Arylsulfatase A; E=4e-57 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=5e-25 PFAM: PF00884; Sulfatase; E=3.3e-84 NP_868077.1 PMID: 20164110 best DB hits: BLAST: gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=2e-35 ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=6e-35 gb:AAF30402.1; AF109924_1 (AF109924) sulfatase 1 precursor [Helix; E=2e-30 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=2e-26 PA0924; COG3083 Predicted hydrolase of alkaline phosphatase; E=0.002 PFAM: PF00884; Sulfatase; E=3.3e-51 NP_868079.1 PMID: 8760914 best DB hits: BLAST: pir:C81860; DNA mismatch repair protein NMA1655 [imported] -; E=8e-97 pir:B81084; mismatch repair protein MutL NMB1442 [imported] -; E=6e-95 ddbj:BAB06087.1; (AP001515) DNA mismatch repair protein [Bacillus; E=1e-85 COG: NMB1442; COG0323 DNA mismatch repair enzyme (predicted ATPase); E=6e-96 PFAM: PF02518; Histidine kinase-, DNA gyrase; E=0.00053 PF01119; DNA mismatch repair protein; E=8.5e-57 NP_868080.1 PMID: 2670894 best DB hits: BLAST: pir:H70373; pyridoxal phosphate biosynthetic protein PdxA - Aquifex; E=3e-45 pir:S77070; pyridoxal phosphate biosynthetic protein pdxA -; E=1e-44 pir:A83572; pyridoxal phosphate biosynthetic protein PdxA PA0593; E=2e-43 COG: aq_852; COG1995 Pyridoxin biosynthesis protein of unknown function; E=3e-46 NP_868082.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu NP_868083.1 best DB hits: PFAM: PF00584; SecE/Sec61-gamma subunits of protein; E=2.2e-07 NP_868084.1 PMID: 2137819 PMID: 1532577 PMID: 7505669 PMID: 8422985 best DB hits: BLAST: gb:AAK03828.1; (AE006211) NusG [Pasteurella multocida]; E=3e-27 pir:A82338; transcription antitermination protein NusG VC0323; E=6e-26 gb:AAF33495.1; (AF170176) 99% identity over 181 amino acids with; E=8e-25 COG: VC0323; COG0250 Transcription antiterminator; E=6e-27 PFAM: PF02357; Transcription termination facto; E=2.9e-10 PF00467; KOW motif; E=0.37 NP_868085.1 PMID: 8181706 PMID: 7715599 PMID: 9731302 best DB hits: BLAST: ddbj:BAB03838.1; (AP001507) 50S ribosomal protein L11 [Bacillus; E=5e-37 swissprot:P36254; RL11_STACA 50S RIBOSOMAL PROTEIN L11 -----; E=1e-36 swissprot:O06443; RL11_STAAU 50S RIBOSOMAL PROTEIN L11 -----; E=1e-36 COG: BH0119; COG0080 Ribosomal protein L11; E=5e-38 PFAM: PF00298; Ribosomal protein L11; E=1.4e-62 NP_868086.1 PMID: 97426617 PMID: 9278503 best DB hits: BLAST: swissprot:P39903; YEAA_ECOLI HYPOTHETICAL 15.5 KDA PROTEIN IN; E=5e-32 gb:AAG51964.1; AC024260_2 (AC024260) transcriptional regulator,; E=3e-31 ddbj:BAA15575.1; (D90821) F44E2.6 protein [Escherichia coli]; E=4e-30 COG: yeaA; COG0229 Conserved domain frequently associated with peptide; E=5e-33 HI1455_2; COG0229 Conserved domain frequently associated with; E=3e-29 BS_yppQ; COG0229 Conserved domain frequently associated with peptide; E=2e-28 PFAM: PF01641; Domain of unknown function DUF25; E=4.7e-66 NP_868089.1 PMID: 97221617 best DB hits: BLAST: gb:AAK03847.1; (AE006213) unknown [Pasteurella multocida]; E=2e-43 pir:E70943; probable ABC-type sugar transport protein -; E=1e-42 embl:CAB77334.1; (AL160331) ABC transporter ATP-binding protein; E=1e-42 COG: Rv2038c; COG1130 ABC-type sugar/spermidine/putrescine transport; E=9e-44 PA0280; COG1118 ABC-type sulfate/molybdate transport systems, ATPase; E=5e-41 BH1140; COG1130 ABC-type sugar/spermidine/putrescine transport; E=5e-41 PFAM: PF00071; Ras family; E=0.056 PF00005; ABC transporter; E=8.4e-47 NP_868090.1 best DB hits: BLAST: pir:B82738; conserved hypothetical protein XF0979 [imported] -; E=2e-14 pir:G81234; conserved hypothetical protein NMB0122 [imported] -; E=3e-14 pir:A82360; conserved hypothetical protein VC0146 [imported] -; E=9e-14 COG: XF0979; COG0742 N6-adenine-specific methylase; E=2e-15 PAB1237; COG1092 Predicted SAM-dependent methyltransferases; E=7e-04 RP545; COG0742 N6-adenine-specific methylase; E=0.006 NP_868091.1 PMID: 8445654 best DB hits: BLAST: pir:C75472; probable lipase - Deinococcus radiodurans (strain R1); E=2e-17 pir:E70914; probable lipO protein - Mycobacterium tuberculosis; E=3e-07 pir:H70731; probable esterase - Mycobacterium tuberculosis (strain; E=4e-07 COG: DR0821_2; COG0657 Acetyl esterase; E=2e-17 DR0415; COG2272 Carboxylesterase type B; E=0.002 VCA0490; COG0657 Acetyl esterase; E=0.005 PFAM: PF00326; Prolyl oligopeptidase; E=0.00023 PF00135; Carboxylesterase; E=2.4e-05 NP_868093.1 best DB hits: BLAST: pir:T35287; probable secreted proteinase - Streptomyces coelicolor; E=3e-10 gb:AAK02818.1; (AE006110) HtrA [Pasteurella multocida]; E=2e-08 pir:S47170; hypothetical protein 34K - Mycobacterium; E=3e-08 COG: VNG0226G; COG0265 Trypsin-like serine proteases, typically; E=9e-09 htrA; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=2e-08 aq_1450; COG0265 Trypsin-like serine proteases, typically; E=5e-08 PFAM: PF00089; Trypsin; E=0.038 NP_868094.1 best DB hits: PFAM: PF02236; Viral DNA-binding protein; E=0.73 NP_868099.1 PMID: 7883195 best DB hits: BLAST: gb:AAD03499.2; (AF035395) serinethreonine protein kinase PpkA; E=6e-16 pir:D83637; serinethreonine protein kinase PpkA PA0074 [imported] -; E=1e-15 pir:T36502; serinethreonine protein kinase - Streptomyces; E=2e-11 COG: PA0074; COG0515 Serine/threonine protein kinases; E=1e-16 PFAM: PF00069; Protein kinase domain; E=1e-08 NP_868100.1 PMID: 20372644 best DB hits: BLAST: ddbj:BAB08177.1; (AB039273) ECF sigma factor AdsA [Streptomyces; E=2e-05 pir:T36271; probable RNA polymerase sigma factor - Streptomyces; E=2e-04 embl:CAB55345.1; (AJ010584) ECF sigma factor [Streptomyces; E=2e-04 COG: Rv3414c; COG1595 DNA-directed RNA polymerase specialized sigma; E=3e-05 TM0902; COG1191 DNA-directed RNA polymerase specialized sigma; E=3e-04 BS_sigH; COG1595 DNA-directed RNA polymerase specialized sigma; E=0.008 PFAM: PF00140; Sigma-70 factor; E=3.2e-05 NP_868101.1 best DB hits: PFAM: PF00009; Elongation factor Tu family; E=0.29 NP_868102.1 PMID: 99426839 best DB hits: BLAST: embl:CAA10713.1; (AJ132604) hypothetical protein [Lactococcus; E=1e-38 gb:AAK05985.1; AE006418_5 (AE006418) serinethreonine protein; E=8e-38 gb:AAD42851.1; AF159689_3 (AF159689) serinethreonine kinase PKN3; E=2e-37 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=3e-38 PFAM: PF01610; Transposase; E=0.64 PF00069; Protein kinase domain; E=7.4e-61 NP_868109.1 PMID: 1537804 best DB hits: BLAST: swissprot:P27236; DCP_SALTY PEPTIDYL-DIPEPTIDASE DCP (DIPEPTIDYL; E=1e-109 pir:E82620; peptidyl-dipeptidase XF1944 [imported] - Xylella; E=1e-107 gb:AAG56224.1; AE005351_3 (AE005351) dipeptidyl carboxypeptidase; E=1e-106 COG: XF1944; COG0339 Zn-dependent oligopeptidases; E=1e-108 PFAM: PF01432; Peptidase M3; E=1.9e-122 NP_868110.1 in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from EScherichia coli involved in cysteine biosynthesis NP_868111.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP NP_868112.1 PMID: 98295987 PMID: 9634230 best DB hits: BLAST: swissprot:O53597; GIDB_MYCTU GLUCOSE INHIBITED DIVISION PROTEIN B; E=2e-15 swissprot:Q50203; GIDB_MYCLE GLUCOSE INHIBITED DIVISION PROTEIN B; E=9e-15 pir:C82950; glucose inhibited division protein B PA5564 [imported] -; E=1e-14 COG: Rv3919c; COG0357 Predicted S-adenosylmethionine-dependent; E=2e-16 PFAM: PF02527; Glucose inhibited division protein; E=1.5e-26 NP_868113.1 PMID: 9083067 PMID: 97238870 best DB hits: BLAST: gb:AAF26789.1; AC016829_13 (AC016829) O-linked GlcNAc; E=2e-09 gb:AAA62535.1; (U21320) contains TPR domain-like repeats; E=2e-08 gb:AAB63465.1; (U77412) O-linked GlcNAc transferase; E=2e-08 COG: sll0886; COG0457 TPR-repeat-containing proteins; E=2e-07 PFAM: PF00515; TPR Domain; E=0.025 NP_868114.1 best DB hits: PFAM: PF02522; Aminoglycoside 3-N-acetyltrans; E=0.66 NP_868117.1 PMID: 8921893 best DB hits: BLAST: swissprot:Q9X909; TOP1_STRCO DNA TOPOISOMERASE I (OMEGA-PROTEIN); E=0.0 pir:G75403; DNA topoisomerase I - Deinococcus radiodurans (strain; E=0.0 swissprot:Q59567; TOP1_MYCTU DNA TOPOISOMERASE I (OMEGA-PROTEIN); E=0.0 COG: DR1374_1; COG0550 Topoisomerase IA; E=1e-170 PFAM: PF01751; Toprim domain; E=3.1e-39 PF01131; DNA topoisomerase; E=4e-164 NP_868118.1 PMID: 8675016 best DB hits: BLAST: swissprot:P94972; UVRA_MYCTU EXCINUCLEASE ABC SUBUNIT A -----; E=0.0 swissprot:Q56242; UVRA_THETH EXCINUCLEASE ABC SUBUNIT A -----; E=0.0 swissprot:Q9Z507; UVRA_STRCO EXCINUCLEASE ABC SUBUNIT A -----; E=0.0 COG: Rv1638; COG0178 Excinuclease ATPase subunit; E=0.0 PFAM: PF00005; ABC transporter; E=0.033 PF01583; Adenylylsulfate kinase; E=0.026 PF00005; ABC transporter; E=5e-12 NP_868119.1 PMID: 7819288 PMID: 9671698 best DB hits: BLAST: ddbj:BAB03821.1; (AP001507) creatine kinase [Bacillus halodurans]; E=1e-66 swissprot:P37570; YACI_BACSU HYPOTHETICAL 41.1 KD PROTEIN IN; E=2e-65 gb:AAC44445.1; (U40604) ORF3; 39 kDa protein [Listeria; E=8e-56 PFAM: PF00217; ATP:guanido phosphotransferase; E=0.0053 NP_868120.1 best DB hits: BLAST: ddbj:BAA90847.1; (AB031211) YacH [Bacillus halodurans] -----; E=2e-08 swissprot:P37569; YACH_BACSU HYPOTHETICAL 21.0 KD PROTEIN IN; E=5e-08 gb:AAC44444.1; (U40604) ORF2; 19 kDa protein [Listeria; E=2e-05 PFAM: PF02151; UvrB/uvrC motif; E=4.7e-08 NP_868122.1 PMID: 2732211 best DB hits: BLAST: swissprot:P14953; TRPE_CLOTM ANTHRANILATE SYNTHASE COMPONENT I; E=1e-112 swissprot:P21689; TRPE_PSESS ANTHRANILATE SYNTHASE COMPONENT I; E=1e-104 pir:A39128; anthranilate synthase (EC 4.1.3.27) component I; E=1e-104 COG: PA0609; COG0147 Anthranilate/para-aminobenzoate synthases component; E=1e-103 VNG0384G; COG0147 Anthranilate/para-aminobenzoate synthases; E=2e-66 VC1174; COG0147 Anthranilate/para-aminobenzoate synthases component; E=1e-64 PFAM: PF00425; chorismate binding enzyme; E=2e-166 NP_868123.1 best DB hits: BLAST: pir:F64973; hypothetical protein b2071 - Escherichia coli (strain; E=1e-08 pir:D81118; conserved hypothetical protein ankyrin-related protein; E=8e-08 pir:C81903; hypothetical protein NMA1343 [imported] - Neisseria; E=1e-04 NP_868124.1 PMID: 97428333 PMID: 2986626 PMID: 9281430 PMID: 11152119 best DB hits: BLAST: pir:A83363; probable cytochrome c precursor PA2266 [imported] -; E=5e-09 pir:E83075; probable cytochrome c PA4571 [imported] - Pseudomonas; E=7e-07 pir:CCTW5T; cytochrome c552 [validated] - Thermus aquaticus; E=9e-07 COG: PA2266; COG2010 Cytochrome c, mono- and diheme variants; E=5e-10 PFAM: PF00034; Cytochrome c; E=0.042 NP_868129.1 PMID: 1391778 best DB hits: BLAST: swissprot:P30364; ASPG_LUPAN L-ASPARAGINASE (L-ASPARAGINE; E=3e-62 swissprot:Q9ZSD6; ASPG_LUPLU L-ASPARAGINASE (L-ASPARAGINE; E=3e-62 swissprot:P50288; ASPG_LUPAL L-ASPARAGINASE (L-ASPARAGINE; E=5e-62 COG: ybiK; COG1446 Asparaginase; E=2e-56 PFAM: PF02530; Porin subfamily; E=0.047 PF01112; Asparaginase; E=1.9e-57 NP_868132.1 PMID: 11743194 NP_868133.1 PMID: 20164110 PMID: 7910580 PMID: 1572648 best DB hits: BLAST: pir:E64903; arylsulfatase homolog b1498 - Escherichia coli -----; E=2e-39 swissprot:P77318; YDEN_ECOLI SULFATASE YDEN PRECURSOR; E=2e-39 gb:AAG56270.1; AE005355_4 (AE005355) sulfatase; E=2e-39 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=2e-40 PFAM: PF00884; Sulfatase; E=1.1e-59 NP_868135.1 best DB hits: PFAM: PF00573; Ribosomal protein L4/L1 family; E=0.0042 NP_868137.1 PMID: 8020961 PMID: 1755850 PMID: 8001980 PMID: 1522213 best DB hits: BLAST: gb:AAF49287.1; (AE003522) CG7402 gene product [Drosophila; E=2e-38 gb:AAF49302.1; (AE003522) CG5584 gene product [Drosophila; E=2e-37 ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=2e-35 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=2e-31 PFAM: PF00884; Sulfatase; E=2.4e-44 NP_868138.1 PMID: hofG PMID: hopG best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_868143.1 PMID: 11294880 best DB hits: BLAST: gb:AAG12988.1; AF169257_1 (AF169257) sodiumcalcium exchanger; E=4e-08 ref:XP_009649.1; sodium calcium exchanger [Homo sapiens]; E=4e-08 gb:AAG60049.1; AF314821_1 (AF314821) K+-dependent NaCa exchanger; E=4e-08 COG: MTH1155; COG0530 Ca2+/Na+ antiporter; E=0.002 PFAM: PF01699; Sodium/calcium exchanger protei; E=4.9e-05 NP_868145.1 PMID: 98295987 best DB hits: BLAST: pir:A70985; probable polyketide synthase - Mycobacterium; E=0.69 NP_868147.1 best DB hits: BLAST: pir:E82768; conserved hypothetical protein XF0752 [imported] -; E=4e-30 pir:A82381; conserved hypothetical protein VCA1077 [imported] -; E=1e-26 gb:AAF47337.1; (AE003467) CG7049 gene product [Drosophila; E=5e-19 COG: XF0752_2; COG1262 Uncharacterized BCR; E=9e-30 NP_868149.1 PMID: 99426839 best DB hits: BLAST: gb:AAF80365.1; AF159160_1 (AF159160) serinethreonine kinase Pkn10; E=6e-50 swissprot:P54744; PKNB_MYCLE SERINETHREONINE-PROTEIN; E=3e-46 swissprot:P71584; PKNB_MYCTU SERINETHREONINE-PROTEIN; E=7e-44 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=7e-45 PFAM: PF00069; Protein kinase domain; E=1.6e-64 NP_868150.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis NP_868151.1 PMID: 1755850 PMID: 8001980 PMID: 1522213 PMID: 7668283 PMID: 7795586 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=4e-24 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=4e-23 gb:AAF58475.1; (AE003821) CG8646 gene product [Drosophila; E=1e-22 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=1e-14 PFAM: PF00884; Sulfatase; E=9.4e-37 NP_868152.1 best DB hits: BLAST: swissprot:O34499; YKGB_BACSU HYPOTHETICAL 38.4 KDA PROTEIN IN; E=1e-43 embl:CAB66198.1; (AL136502) hypothetical protein SCF43.09.; E=1e-31 embl:CAC13069.1; (AL445503) secreted protein; E=6e-31 COG: BS_ykgB; COG2706 3-carboxymuconate cyclase; E=1e-44 NP_868154.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain NP_868155.1 PMID: 2997734 best DB hits: BLAST: pir:C83025; probable phosphoserine phosphatase PA4960 [imported] -; E=1e-108 pir:E70860; probable serB2 protein - Mycobacterium tuberculosis; E=1e-60 pir:T36772; probable phosphoserine phosphatase - Streptomyces; E=1e-57 COG: PA4960_2; COG0560 Phosphoserine phosphatase; E=5e-70 PA4960_1; COG2716 ACT domain-containing protein; E=3e-31 jhp0597; COG0560 Phosphoserine phosphatase; E=6e-26 PFAM: PF01842; ACT domain; E=0.052 PF00702; haloacid dehalogenase-like hy; E=3.6e-26 NP_868156.1 PMID: 8943290 best DB hits: BLAST: pir:E70627; hypothetical protein Rv0266c - Mycobacterium tuberculosis; E=0.0 pir:S77037; hypothetical protein slr0697 - Synechocystis sp. (strain; E=0.0 swissprot:P97608; OPLA_RAT 5-OXOPROLINASE (5-OXO-L-PROLINASE); E=1e-153 COG: Rv0266c_1; COG0145 N-methylhydaintoinase A; E=2e-99 slr0697_2; COG0146 N-methylhydaintoinase B; E=9e-85 YKL215c_1; COG0145 N-methylhydaintoinase A; E=6e-73 PFAM: PF01968; Hydantoinase/oxoprolinase; E=0.00018 PF02538; Hydantoinase B/oxoprolinase; E=1.7e-167 NP_868157.1 best DB hits: PFAM: PF01011; PQQ enzyme repeat; E=0.48 PF00515; TPR Domain; E=0.0026 PF01011; PQQ enzyme repeat; E=0.16 NP_868158.1 PMID: 98230330 best DB hits: BLAST: embl:CAA67986.1; (X99672) devC [Anabaena sp.]; E=2e-57 embl:CAA05976.1; (AJ003195) membrane spanning subunit [Anabaena; E=7e-57 pir:S76812; hypothetical protein - Synechocystis sp. (strain PCC; E=4e-53 COG: Rv0072; COG0577 Predicted permease; E=0.008 PFAM: PF02687; Predicted permease; E=5.7e-12 NP_868159.1 PMID: 1406588 best DB hits: BLAST: pir:G82098; conserved hypothetical protein VC2272 [imported] -; E=4e-30 swissprot:P25538; YBAD_ECOLI HYPOTHETICAL 17.2 KD PROTEIN IN; E=2e-28 pir:E72221; conserved hypothetical protein - Thermotoga maritima; E=4e-28 COG: VC2272; COG1327 Predicted transcriptional regulator, consists of a; E=4e-31 PFAM: PF02644; Uncharacterized BCR, COG1327; E=5.2e-62 NP_868161.1 PMID: 98295987 best DB hits: BLAST: pir:G70979; hypothetical protein Rv3278c - Mycobacterium; E=0.59 PFAM: PF01944; Integral membrane protein DUF95; E=0.0077 NP_868162.1 PMID: 2509712 best DB hits: BLAST: swissprot:P18746; ZO26_XENLA OOCYTE ZINC FINGER PROTEIN XLCOF26; E=0.84 NP_868166.1 PMID: 7590303 PMID: 2987648 best DB hits: BLAST: gb:AAF73591.1; (AE002337) spoU rRNA methylase; E=2e-27 pir:C72066; rRNA methylase - Chlamydophila pneumoniae (strain; E=5e-27 pir:A75448; rRNA methylase - Deinococcus radiodurans (strain R1); E=2e-26 COG: CPn0530; COG0566 rRNA methylases; E=5e-28 PFAM: PF00588; SpoU rRNA Methylase; E=4.7e-24 NP_868167.1 PMID: 97426617 best DB hits: BLAST: pir:C65084; hypothetical protein b2981 - Escherichia coli (strain; E=9e-35 NP_868168.1 PMID: 92332449 best DB hits: BLAST: pir:E82133; ATP-dependent helicase, DinG family VC1990 [imported] -; E=4e-87 swissprot:P76257; YOAA_ECOLI PROBABLE ATP-DEPENDENT HELICASE YOAA; E=2e-84 gb:AAG56797.1; AE005403_8 (AE005403) enzyme [Escherichia; E=5e-84 COG: VC1990; COG1199 Rad3-related DNA helicases; E=4e-88 PFAM: PF00270; DEAD/DEAH box helicase; E=0.00011 PF00271; Helicase conserved C-terminal; E=0.5 NP_868175.1 PMID: 2808524 PMID: 8276898 PMID: 2497103 best DB hits: BLAST: swissprot:P13395; SPCA_DROME SPECTRIN ALPHA CHAIN ----- pir:; E=0.46 gb:AAF47569.1; (AE003472) alpha-Spec gene product [alt 2]; E=0.46 NP_868176.1 PMID: 20125575 best DB hits: BLAST: ddbj:BAB05586.1; (AP001513) BH1867~unknown conserved protein; E=1e-23 pir:B59296; alpha-L-arabinofuranosidase II [validated] -; E=6e-19 embl:CAB89837.1; (AJ242516) hypothetical protein [Salmonella; E=1e-18 NP_868177.1 PMID: 11466286 best DB hits: BLAST: embl:CAB93380.1; (AL357523) hypothetical protein [Streptomyces; E=1e-12 swissprot:Q52673; YQGF_RHOCA HYPOTHETICAL 17.1 KDA PROTEIN -----; E=4e-12 swissprot:Q9ZDJ8; Y330_RICPR HYPOTHETICAL PROTEIN RP330 -----; E=2e-11 COG: RP330; COG0816 Predicted endonuclease involved in recombination; E=2e-12 NP_868179.1 PMID: 7910580 PMID: 1572648 best DB hits: BLAST: swissprot:P50428; ARSA_MOUSE ARYLSULFATASE A PRECURSOR (ASA); E=1e-56 embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=4e-55 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=4e-55 COG: aslA; COG3119 Arylsulfatase A and related enzymes; E=2e-31 PFAM: PF00884; Sulfatase; E=1.6e-47 NP_868181.1 PMID: 2664449 best DB hits: BLAST: swissprot:P74561; HIS4_SYNY3; E=3e-56 pir:A83003; phosphoribosylformimino-5-aminoimidazole carboxamide; E=5e-49 gb:AAF05093.1; AF150930_2 (AF150930) phosphoribosyl; E=2e-46 COG: slr0652; COG0106 Phosphoribosylformimino-5-aminoimidazole; E=3e-57 PA5141; COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide; E=5e-50 NMB0629; COG0106 Phosphoribosylformimino-5-aminoimidazole; E=6e-44 PFAM: PF00977; Histidine biosynthesis protein; E=4.7e-70 NP_868182.1 best DB hits: BLAST: pir:S75597; hypothetical protein slr1343 - Synechocystis sp. (strain; E=6e-94 gb:AAG19190.1; (AE005016) Vng0705c [Halobacterium sp. NRC-1]; E=2e-91 pir:G82413; conserved hypothetical protein VCA0809 [imported] -; E=2e-83 COG: slr1343; COG3046 Deoxyribodipyrimidine photolyase-related proteins; E=6e-95 NP_868184.1 PMID: 11705915 best DB hits: BLAST: gb:AAG31169.1; (AF314961) unknown [Salmonella typhimurium]; E=0.70 PFAM: PF01011; PQQ enzyme repeat; E=0.017 NP_868186.1 PMID: 20039618 best DB hits: BLAST: ddbj:BAA86452.1; (AB032964) KIAA1138 protein [Homo sapiens]; E=0.74 NP_868189.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.86 NP_868193.1 PMID: 1588814 PMID: 1309616 best DB hits: BLAST: pir:E83258; general secretion pathway protein G PA3101 [imported]; E=0.063 gb:AAC83358.1; (AF092918) outer membrane secretion protein T; E=0.069 gb:AAC79845.1; (AF089753) cellulose-binding protein CbpC; E=0.24 COG: PA3101; COG2165 General secretory pathway proteins G and H and; E=0.006 PFAM: PF02361; Cobalt transport protein; E=0.11 PF00114; Pilin (bacterial filament); E=0.011 NP_868197.1 PMID: 1924314 PMID: 8088782 best DB hits: BLAST: pir:T36523; probable ABC-type transport system ATP-binding protein -; E=4e-37 pir:C72303; ABC transporter ATP-binding protein - Thermotoga; E=6e-34 gb:AAF81232.1; (AF263012) ABC transporter ATP binding protein; E=9e-33 COG: TM1028; COG1131 ABC-type multidrug transport system, ATPase; E=5e-35 PFAM: PF00005; ABC transporter; E=5e-43 NP_868198.1 best DB hits: BLAST: pir:G69999; transcriptional regulator GntR related protein ytrA -; E=4e-13 pir:D72336; transcriptional regulator, GntR family - Thermotoga; E=9e-13 gb:AAC62421.1; (AF084104) hypothetical protein [Bacillus firmus]; E=1e-08 COG: BS_ytrA; COG1725 Predicted transcriptional regulators; E=4e-14 BH1940; COG1167 Transcriptional regulators containing a; E=3e-06 BH1164; COG1725 Predicted transcriptional regulators; E=5e-06 PFAM: PF00392; Bacterial regulatory proteins, gntR; E=0.0001 NP_868199.1 best DB hits: BLAST: ddbj:BAB06996.1; (AP001518) spore cortex protein [Bacillus; E=0.022 COG: BH3277; COG2244 Membrane protein involved in the export of O-antigen; E=0.002 PFAM: PF01943; Polysaccharide biosynthesis pro; E=0.05 NP_868201.1 PMID: 7806516 best DB hits: BLAST: gb:AAF98278.1; AF197933_8 (AF197933) beta-hydroxyacyl-ACP; E=2e-14 gb:AAK04875.1; AE006311_6 (AE006311); E=3e-14 pir:C82731; (3r)-hydroxymyristoyl ACP dehydrase XF1044 [imported] -; E=6e-14 COG: XF1044; COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier; E=6e-15 PFAM: PF01377; Thioester dehydrase; E=2.1e-18 PF01575; MaoC like domain; E=0.0056 NP_868202.1 PMID: 20138198 best DB hits: BLAST: gb:AAF05840.1; AF197058_1 (AF197058) trans-2-enoyl-ACP reductase; E=6e-31 ddbj:BAB06562.1; (AP001516) enoyl-[acyl-carrier protein]; E=5e-29 gb:AAD04184.1; (L10036) unknown [Nostoc sp. PCC 7120]; E=2e-28 COG: BH2843; COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH); E=5e-30 TM0441; COG1028 Dehydrogenases with different specificities (related; E=1e-09 BS_yfhR; COG1028 Dehydrogenases with different specificities; E=1e-06 PFAM: PF00678; Short chain dehydrogenase/redu; E=7.1e-05 NP_868203.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids NP_868206.1 PMID: 93188700 best DB hits: BLAST: embl:CAA19102.1; (AL023591) hypothetical protein MLCB1259.27; E=1e-95 swissprot:Q50739; YP59_MYCTU HYPOTHETICAL 47.5 KDA PROTEIN RV2559C; E=2e-91 embl:CAB93386.1; (AL357523) conserved ATPGTP binding protein; E=2e-90 COG: Rv2559c; COG2256 Uncharacterized ATPase related to the helicase; E=2e-92 ycaJ; COG2256 Uncharacterized ATPase related to the helicase subunit; E=4e-86 HI1590; COG2256 Uncharacterized ATPase related to the helicase; E=1e-85 PFAM: PF01057; Parvovirus non-structural pro; E=0.099 PF00910; RNA helicase; E=0.0011 PF00004; ATPase associated with; E=7.6e-20 NP_868209.1 best DB hits: BLAST: pir:T47011; hypothetical protein [imported] - Yersinia pestis; E=0.020 embl:CAB58305.1; (AL121854) hypothetical protein SCJ33.06c; E=0.11 pir:E69891; cytochrome c biogenesis protein CycX homolog homolog; E=0.28 NP_868213.1 PMID: 8393005 PMID: 7751274 PMID: 9211896 best DB hits: BLAST: ddbj:BAB07336.1; (AP001519) carbon storage regulator [Bacillus; E=2e-07 swissprot:O83663; CSRA_TREPA CARBON STORAGE REGULATOR HOMOLOG; E=5e-07 swissprot:P44879; CSRA_HAEIN CARBON STORAGE REGULATOR HOMOLOG; E=6e-06 COG: BH3617; COG1551 Carbon storage regulator (could also regulate; E=2e-08 PFAM: PF02599; Carbon storage regulator; E=8.9e-27 NP_868215.1 best DB hits: BLAST: pir:C75577; conserved hypothetical protein - Deinococcus radiodurans; E=1e-13 pir:E70324; conserved hypothetical protein aq_268 - Aquifex aeolicus; E=3e-07 swissprot:P44675; YFHP_HAEIN HYPOTHETICAL PROTEIN HI0379 -----; E=2e-04 COG: DRA0242; COG1959 Predicted transcriptional regulator; E=1e-14 PFAM: PF02082; Uncharacterized protein family UPF00; E=6.3e-10 NP_868216.1 PMID: 8168477 PMID: 10360571 best DB hits: BLAST: swissprot:P56727; Y929_THEMA HYPOTHETICAL PROTEIN TM0929 -----; E=1e-09 embl:CAA57668.1; (X82178) orf1 [Thermotoga maritima]; E=0.34 gb:AAA65436.1; (U24145) orf1; upstream of ferrodoxin; Method:; E=0.34 NP_868217.1 PMID: 99287316 best DB hits: BLAST: pir:B72315; conserved hypothetical protein - Thermotoga maritima; E=1e-25 pir:T35221; probable ATPGTP binding protein - Streptomyces; E=5e-15 pir:A75429; conserved hypothetical protein - Deinococcus radiodurans; E=1e-07 COG: TM0930; COG0714 MoxR-like ATPases; E=1e-26 NP_868219.1 PMID: 1708495 best DB hits: BLAST: swissprot:P37454; EXOA_BACSU EXODEOXYRIBONUCLEASE ----- pir:; E=7e-78 pir:F64710; exodeoxyribonuclease - Helicobacter pylori (strain; E=3e-72 pir:C71809; exodeoxyribonuclease - Helicobacter pylori (strain J99); E=2e-71 COG: BS_exoA; COG0708 Exonuclease III; E=7e-79 PFAM: PF01181; Deoxyribonuclease I (DNase I); E=0.25 PF01260; AP endonuclease 1; E=2e-108 NP_868220.1 best DB hits: BLAST: pir:F75496; conserved hypothetical protein - Deinococcus radiodurans; E=1e-63 gb:AAG19057.1; (AE005004) Vng0533h [Halobacterium sp. NRC-1]; E=5e-34 embl:CAB93731.1; (AL357613) hypothetical protein SC5F8.03c.; E=9e-30 COG: DR0625; COG2013 Uncharacterized ACR; E=1e-64 NP_868222.1 best DB hits: BLAST: pir:G71299; conserved hypothetical protein TP0648 - syphilis; E=0.027 pir:S49376; hypothetical protein 3 - Pseudomonas aeruginosa -----; E=0.11 pir:F69210; conserved hypothetical protein MTH83 - Methanobacterium; E=0.20 COG: TP0648; COG0457 TPR-repeat-containing proteins; E=0.003 PFAM: PF00515; TPR Domain; E=0.0036 NP_868223.1 PMID: 11259647 NP_868224.1 best DB hits: BLAST: pir:C83106; conserved hypothetical protein PA4322 [imported] -; E=2e-61 pir:G71146; hypothetical protein PH0385 - Pyrococcus horikoshii; E=1e-60 pir:H82493; MoxR-related protein VCA0175 [imported] - Vibrio; E=2e-60 COG: PA4322; COG0714 MoxR-like ATPases; E=2e-62 PFAM: PF00004; ATPase associated with; E=0.0029 PF01078; Magnesium chelatase, subunit; E=1.7e-06 NP_868225.1 best DB hits: BLAST: swissprot:P71761; YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480; E=2e-17 pir:G82493; conserved hypothetical protein VCA0174 [imported] -; E=1e-12 pir:H83261; hypothetical protein PA3071 [imported] - Pseudomonas; E=2e-12 COG: Rv1480; COG1721 Uncharacterized ACR; E=1e-18 PFAM: PF01882; Protein of unknown function DUF58; E=8.4e-16 NP_868226.1 PMID: 2450046 PMID: 2446322 PMID: 2462430 PMID: 3663330 PMID: 2476436 PMID: 1384548 best DB hits: BLAST: swissprot:P19823; ITH2_HUMAN INTER-ALPHA-TRYPSIN INHIBITOR HEAVY; E=0.69 ref:XP_011910.1; similar to inter-alpha (globulin) inhibitor, H2; E=0.69 NP_868228.1 best DB hits: PFAM: PF00672; HAMP domain; E=0.22 NP_868230.1 best DB hits: BLAST: gb:AAG54864.1; AE005231_11 (AE005231) glyoxylate-induced protein; E=9e-21 gb:AAG59852.1; AF284750_1 (AF284750) HT036-ISO [Homo sapiens]; E=1e-20 swissprot:Q44015; YGB4_ALCEU HYPOTHETICAL 28.3 KDA PROTEIN IN GBD; E=1e-20 COG: gip; COG1082 Predicted endonucleases; E=3e-21 NP_868231.1 PMID: 8056751 best DB hits: BLAST: pir:G82830; ATP-dependent RNA helicase XF0252 [imported] - Xylella; E=1e-151 swissprot:Q11039; DEAD_MYCTU COLD-SHOCK DEAD-BOX PROTEIN A HOMOLOG; E=1e-128 pir:JX0314; DEAD box protein - Klebsiella pneumoniae ----- gb:; E=1e-128 COG: XF0252; COG0513 Superfamily II DNA and RNA helicases; E=1e-152 PFAM: PF00270; DEAD/DEAH box helicase; E=9.2e-70 PF00271; Helicase conserved C-terminal doma; E=7.8e-35 NP_868235.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_868237.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.0077 NP_868238.1 PMID: 8407798 best DB hits: BLAST: swissprot:P50619; YMAB_BACSU HYPOTHETICAL 23.4 KD PROTEIN IN; E=1e-17 pir:G72261; conserved hypothetical protein - Thermotoga maritima; E=9e-13 NP_868239.1 PMID: 95134354 best DB hits: BLAST: embl:CAA52615.1; (X74509) N-methylpurine-DNA glycosirase (MPG); E=9e-26 pdb:1F4R; A Chain A, Crystal Structure Of The Human Aag Dna Repair; E=3e-22 gb:AAA58369.1; (M71215) alkyl-N-purine-DNA glycosylasee [Homo; E=5e-22 COG: APE2247; COG2094 3-methyladenine DNA glycosylase; E=8e-18 PFAM: PF02245; Methylpurine-DNA glycosylase (M; E=2.2e-44 NP_868240.1 PMID: 7592318 best DB hits: BLAST: ddbj:BAB05411.1; (AP001512) BH1692~unknown conserved protein in; E=1e-18 swissprot:Q9RW45; Y824_DEIRA HYPOTHETICAL PROTEIN DR0824 -----; E=1e-16 swissprot:O27549; YF05_METTH HYPOTHETICAL PROTEIN MTH1505 -----; E=5e-16 COG: BH1692; COG0402 Cytosine deaminase and related metal-dependent; E=1e-19 PFAM: PF00744; Dihydroorotase-like; E=0.025 PF01979; Adenine deaminase; E=0.099 PF00962; Adenosine/AMP deaminase; E=0.05 NP_868241.1 best DB hits: PFAM: PF02517; CAAX amino terminal protease; E=0.1 NP_868242.1 PMID: 1349418 best DB hits: BLAST: ddbj:BAB04170.1; (AP001508) lantibiotic mersacidin transporter; E=5e-21 swissprot:P45861; YWJA_BACSU HYPOTHETICAL ABC TRANSPORTER; E=7e-21 ddbj:BAB04845.1; (AP001511) ABC transporter (ATP-binding protein); E=5e-20 COG: BH0451; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain; E=5e-22 BS_ywjA; COG1132 ABC-type multidrug/protein/lipid transport system,; E=6e-22 VCA1084; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain; E=2e-17 PFAM: PF00005; ABC transporter; E=0.024 NP_868243.1 best DB hits: BLAST: pir:S76926; hypothetical protein - Synechocystis sp. (strain PCC; E=1e-06 gb:AAC36156.1; (AF003632) PilI [Myxococcus xanthus]; E=0.016 COG: sll1107; COG1277 Permease component of an ABC-transporter; E=9e-08 NP_868244.1 PMID: 11997336 best DB hits: BLAST: pir:H72201; conserved hypothetical protein - Thermotoga maritima; E=1e-14 pir:A70337; hypothetical protein aq_408 - Aquifex aeolicus -----; E=1e-08 NP_868245.1 PMID: 8907187 PMID: 10029535 best DB hits: BLAST: ddbj:BAB07069.1; (AP001518) aspartate aminotransferase [Bacillus; E=2e-59 embl:CAC11669.1; (AL445064) probable aspartate aminotransferase; E=9e-55 pir:G69119; probable aspartate transaminase (EC 2.6.1.1) MTH1894; E=2e-54 COG: BH3350; COG0436 PLP-dependent aminotransferases; E=2e-60 PFAM: PF01041; DegT/DnrJ/EryC1/StrS family; E=1.5e-05 PF01053; Cys/Met metabolism PLP-depend; E=5.4e-05 PF00222; Aminotransferase class-II; E=0.28 NP_868246.1 PMID: 7704274 best DB hits: BLAST: ddbj:BAB06322.1; (AP001516) O-acetylhomoserine sulfhydrylase; E=1e-123 pir:D72324; O-acetylhomoserine sulfhydrylase - Thermotoga maritima; E=1e-114 pir:T40463; O-acetylhomoserine (thiol)-lyase (EC 4.2.99.10) -; E=1e-110 COG: BH2603; COG2873 O-acetylhomoserine sulfhydrylase; E=1e-124 DR0921; COG0626 Cystathionine beta-lyases/cystathionine; E=7e-63 PFAM: PF01053; Cys/Met metabolism PLP-depend; E=6.3e-204 NP_868247.1 PMID: 9209059 best DB hits: BLAST: swissprot:P57714; METX_PSEAE HOMOSERINE O-ACETYLTRANSFERASE; E=1e-83 swissprot:P94891; METX_LEPME HOMOSERINE O-ACETYLTRANSFERASE; E=7e-78 swissprot:Q9JZQ5; METX_NEIMB HOMOSERINE O-ACETYLTRANSFERASE; E=1e-77 COG: PA0390; COG2021 Homoserine acetyltransferase; E=1e-84 PA0389; COG0500 SAM-dependent methyltransferases; E=2e-26 MTH1820; COG2021 Homoserine acetyltransferase; E=8e-14 PFAM: PF00561; alpha/beta hydrolase fold; E=6.7e-07 NP_868248.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_868253.1 PMID: 98037514 best DB hits: BLAST: pir:A69115; hypothetical protein MTH1854 - Methanobacterium; E=4e-13 pir:D69083; hypothetical protein MTH162 - Methanobacterium; E=4e-09 gb:AAB89585.1; (AE000988) acetolactate synthase, small subunit,; E=5e-07 PFAM: PF01842; ACT domain; E=0.0014 NP_868254.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic NP_868257.1 PMID: 9115640 best DB hits: BLAST: ref:XP_009063.1; TR00071480_p [Homo sapiens]; E=2e-62 swissprot:Q61171; PDX2_MOUSE PEROXIREDOXIN 2 (THIOREDOXIN; E=3e-62 swissprot:P32119; PDX2_HUMAN PEROXIREDOXIN 2 (THIOREDOXIN; E=4e-62 COG: PA0848; COG0450 Thiol - alkyl hydroperoxide reductases; E=4e-60 PFAM: PF00578; AhpC/TSA family; E=1e-71 NP_868259.1 PMID: 9804807 best DB hits: BLAST: swissprot:P44973; 60IM_HAEIN 60 KDA INNER-MEMBRANE PROTEIN HOMOLOG; E=7e-31 gb:AAG58902.1; AE005601_8 (AE005601) 60 KD inner-membrane protein; E=4e-30 swissprot:P25714; 60IM_ECOLI 60 KDA INNER-MEMBRANE PROTEIN -----; E=4e-30 COG: HI1001; COG0706 Preprotein translocase subunit YidC; E=6e-32 PFAM: PF00595; PDZ domain (Also known as DHR or GLG; E=5.2e-06 PF02096; 60Kd inner membrane protein; E=2.8e-49 NP_868262.1 best DB hits: BLAST: embl:CAB59607.1; (AL132662) transmembrane protein; E=6e-08 pir:G83504; hypothetical protein PA1139 [imported] - Pseudomonas; E=6e-06 pir:T35659; probable transmembrane protein - Streptomyces coelicolor; E=2e-05 COG: PA1139; COG2340 Uncharacterized protein with SCP/PR1 domains; E=6e-07 NP_868264.1 PMID: 11571162 PMID: 89125597 best DB hits: BLAST: embl:CAA98652.1; (Z74134) ORF YDL086w [Saccharomyces cerevisiae]; E=2e-36 gb:AAC69477.1; (AF087482) dienelactone hydrolase [Pseudomonas; E=3e-09 ddbj:BAA74533.1; (AB019032) dienelactone hydrolase [Ralstonia; E=1e-08 COG: YDL086w; COG0412 Dienelactone hydrolase and related enzymes; E=2e-37 PFAM: PF01738; Dienelactone hydrolase; E=4.2e-05 NP_868265.1 PMID: 2129559 PMID: 1944398 PMID: 10562565 PMID: 10873442 best DB hits: BLAST: swissprot:O32038; SYD_BACSU ASPARTYL-TRNA SYNTHETASE; E=1e-165 ddbj:BAB04971.1; (AP001511) aspartyl-tRNA synthetase [Bacillus; E=1e-161 swissprot:O67589; SYD_AQUAE ASPARTYL-TRNA SYNTHETASE; E=1e-157 COG: BS_aspS; COG0173 Aspartyl-tRNA synthetase; E=1e-166 PFAM: PF01336; OB-fold nucleic acid binding dom; E=2.2e-11 PF00152; tRNA synthetases class II (D, K; E=8.2e-21 PF01409; tRNA synthetases class II (F); E=0.69 NP_868266.1 PMID: 9308174 best DB hits: BLAST: gb:AAB89635.1; (AE000991) cationic amino acid transporter (cat-1); E=3e-38 gb:AAG20879.1; (AE005155) cationic amino acid transporter; Cat2; E=1e-29 gb:AAG18789.1; (AE004983) cationic amino acid transporter; Cat1; E=6e-21 COG: AF1612_1; COG0531 Amino acid transporters; E=2e-32 PA5097; COG1113 Gamma-aminobutyrate and related permeases; E=4e-12 BS_ykbA; COG0531 Amino acid transporters; E=8e-12 PFAM: PF00324; Amino acid permease; E=2e-08 NP_868269.1 PMID: 20150255 best DB hits: BLAST: pir:H72072; conserved hypothetical protein CP0257 [imported] -; E=2e-10 pir:F81677; conserved hypothetical protein TC0667 [imported] -; E=4e-10 pir:B71520; hypothetical protein CT388 - Chlamydia trachomatis; E=6e-10 COG: CPn0497; COG1872 Uncharacterized ACR; E=2e-11 PFAM: PF02594; Uncharacterized ACR, YggU family COG; E=4.7e-22 NP_868270.1 PMID: 96062224 best DB hits: BLAST: pir:H64526; proline dehydrogenase (EC 1.5.99.8); E=0.0 pir:B71980; proline dehydrogenase (EC 1.5.99.8); E=0.0 pir:C81297; proline dehydrogenase (EC 1.5.99.8); E=1e-180 COG: jhp0048_2; COG1012 NAD-dependent aldehyde dehydrogenases; E=1e-123 Cj1503c_1; COG0506 Proline dehydrogenase; E=2e-56 sll1561_2; COG1012 NAD-dependent aldehyde dehydrogenases; E=1e-51 PFAM: PF01619; Proline dehydrogenase; E=2e-36 PF00171; Aldehyde dehydrogenase; E=0.0014 NP_868271.1 best DB hits: BLAST: swissprot:O67466; YE94_AQUAE HYPOTHETICAL PROTEIN AQ_1494 -----; E=3e-12 pir:B75463; conserved hypothetical protein - Deinococcus radiodurans; E=4e-10 pir:I39564; hypothetical protein 6 gbd-region [imported] -; E=1e-08 COG: aq_1494; COG0824 Predicted thioesterase; E=3e-13 NP_868272.1 best DB hits: BLAST: gb:AAK03329.1; (AE006164) unknown [Pasteurella multocida]; E=1e-04 swissprot:Q58707; YD11_METJA HYPOTHETICAL PROTEIN MJ1311 -----; E=2e-04 pir:S47803; hypothetical 33.7K protein (avtA-selB intergenic region); E=0.002 COG: MJ1311; COG1082 Predicted endonucleases; E=2e-05 NP_868273.1 best DB hits: BLAST: swissprot:P73460; YB44_SYNY3 HYPOTHETICAL 34.4 KDA PROTEIN SLL1144; E=2e-40 swissprot:Q9WZX6; Y872_THEMA HYPOTHETICAL PROTEIN TM0872 -----; E=7e-40 gb:AAK02218.1; (AE006048) unknown [Pasteurella multocida]; E=4e-38 COG: sll1144; COG0275 Predicted S-adenosylmethionine-dependent; E=2e-41 PFAM: PF01795; MraW methylase; E=2e-100 NP_868275.1 PMID: 8346225 PMID: 9097040 best DB hits: BLAST: swissprot:Q06067; ATOS_ECOLI SENSOR PROTEIN ATOS ----- pir:; E=2e-17 gb:AAD47419.1; AF100457_2 (AF100457) histidine kinase [Myxococcus; E=2e-16 ddbj:BAB04255.1; (AP001508) two-component sensor histidine kinase; E=3e-14 COG: atoS_3; COG0642 Sensory transduction histidine kinases; E=2e-18 Rv1827; COG1716 FHA-domain-containing proteins; E=1e-08 PA2882; COG0642 Sensory transduction histidine kinases; E=2e-08 PFAM: PF00498; FHA domain; E=3.2e-19 PF01590; GAF domain; E=4.8e-18 PF00512; His Kinase A (phosphoacceptor) doma; E=6.6e-07 NP_868279.1 PMID: 11759840 NP_868282.1 PMID: 98196666 best DB hits: BLAST: pir:F70440; conserved hypothetical protein aq_1630 - Aquifex; E=3e-18 pir:D71323; conserved hypothetical protein TP0436 - syphilis; E=3e-18 pir:F69999; conserved hypothetical protein ytqI - Bacillus subtilis; E=1e-16 COG: aq_1630; COG0618 Exopolyphosphatase-related proteins; E=3e-19 PFAM: PF01368; DHH family; E=2.4e-12 PF02272; DHHA1 domain; E=2.2e-06 NP_868283.1 PMID: 7772835 PMID: 3023344 best DB hits: BLAST: pir:T35984; probable riboflavin kinase (FAD synthetase) -; E=3e-46 pir:C83077; riboflavin kinaseFAD synthase PA4561 [imported] -; E=4e-42 pir:C82293; riboflavin kinaseFMN adenylyltransferase VC0681; E=2e-41 COG: PA4561; COG0196 FAD synthase; E=4e-43 PFAM: PF01687; Riboflavin kinase / FAD synthetase; E=3.3e-32 NP_868284.1 PMID: 20406833 best DB hits: BLAST: pir:H82489; conserved hypothetical protein VCA0191 [imported] -; E=2e-23 pir:G81111; conserved hypothetical protein NMB1197, NMB1159; E=4e-21 pir:C72317; conserved hypothetical protein - Thermotoga maritima; E=9e-21 COG: VCA0191_2; COG0063 Predicted sugar kinase; E=8e-24 PFAM: PF01256; Uncharacterized protein family UPF00; E=3.6e-40 NP_868285.1 PMID: 8170937 best DB hits: BLAST: pir:S76018; hypothetical protein - Synechocystis sp. (strain PCC; E=2e-61 swissprot:Q58752; YD57_METJA POTASSIUM CHANNEL PROTEIN; E=1e-36 swissprot:Q57604; Y13B_METJA POTASSIUM CHANNEL PROTEIN; E=2e-34 COG: sll0536; COG1226 Kef-type K+ transport systems, predicted; E=1e-62 MJ1357; COG1226 Kef-type K+ transport systems, predicted NAD-binding; E=1e-37 MJ0138.1; COG1226 Kef-type K+ transport systems, predicted; E=2e-35 PFAM: PF00520; Ion transport protein; E=0.45 PF02254; KTN NAD-binding domain; E=5.2e-39 PF02080; Potassium channel; E=2.2e-09 NP_868286.1 PMID: 98049343 PMID: 8809759 best DB hits: BLAST: gb:AAB89969.1; (AE001016) conserved hypothetical protein; E=4e-29 pir:S76797; hypothetical protein - Synechocystis sp. (strain PCC; E=7e-28 gb:AAD29318.1; AF117208_1 (AF117208) circadian phase modifier; E=2e-24 COG: AF1275; COG1691 NCAIR mutase (PurE)-related proteins; E=4e-30 NP_868287.1 PMID: 20158877 PMID: 90046714 PMID: 3174461 best DB hits: BLAST: pir:H72210; argininosuccinate synthase - Thermotoga maritima (strain; E=2e-97 pir:D75490; arginosuccinate synthase - Deinococcus radiodurans; E=3e-96 pir:C83204; argininosuccinate synthase PA3525 [imported] -; E=2e-87 COG: TM1780; COG0137 Argininosuccinate synthase; E=2e-98 PFAM: PF00764; Arginosuccinate synthase; E=2e-190 NP_868289.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine NP_868291.1 PMID: 2542219 best DB hits: PFAM: PF02674; Colicin V production protein; E=8.4e-14 NP_868293.1 best DB hits: BLAST: gb:AAK02376.1; (AE006064) AccA [Pasteurella multocida]; E=4e-72 swissprot:P43872; ACCA_HAEIN ACETYL-COENZYME A CARBOXYLASE; E=6e-72 ddbj:BAA77860.1; (D83536) Acetyl-CoA carboxylase (EC 6.4.1.2),; E=1e-68 COG: HI0406; COG0825 Acetyl-CoA carboxylase alpha subunit; E=5e-73 NP_868294.1 PMID: 7774814 best DB hits: BLAST: pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=2e-27 pir:T36717; probable serinethreonine protein kinase - Streptomyces; E=1e-26 pir:T36501; probable serinethreonine protein kinase - Streptomyces; E=2e-26 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=1e-28 PFAM: PF00069; Protein kinase domain; E=3e-39 NP_868295.1 PMID: 10531250 best DB hits: BLAST: gb:AAD50490.1; AF172324_8 (AF172324) WbnE [Escherichia coli]; E=7e-21 pir:C70036; capsular polysaccharide biosynthesis homolog yveN -; E=2e-19 pir:T35514; probable glycosyl transferase - Streptomyces coelicolor; E=2e-17 COG: BS_yveN; COG0438 Predicted glycosyltransferases; E=2e-20 PFAM: PF00534; Glycosyl transferases group 1; E=9.5e-43 NP_868296.1 PMID: 2507166 PMID: 94259284 best DB hits: BLAST: pir:S29615; whiG protein - Streptoverticillium griseocarneum -----; E=5e-44 gb:AAB41960.1; (U58281) sporulation sigma factor [Streptomyces; E=9e-44 prf:2013252A; RNA polymerase:SUBUNIT=sigma factor [Streptomyces; E=1e-43 COG: TP0709; COG1191 DNA-directed RNA polymerase specialized sigma; E=8e-41 fliA; COG1191 DNA-directed RNA polymerase specialized sigma subunit; E=2e-38 BS_sigD; COG1191 DNA-directed RNA polymerase specialized sigma; E=7e-34 PFAM: PF01399; PCI domain; E=0.026 PF00140; Sigma-70 factor; E=1.3e-59 NP_868299.1 PMID: 1447978 best DB hits: BLAST: pir:B72319; flagellar biosynthesis protein FlhF - Thermotoga; E=9e-32 ddbj:BAB06156.1; (AP001515) flagella-associated protein [Bacillus; E=3e-22 swissprot:Q01960; FLHF_BACSU FLAGELLAR BIOSYNTHESIS PROTEIN FLHF; E=2e-21 COG: TM0907; COG1419 Flagellar GTP-binding protein; E=8e-33 AF0622; COG0541 Signal recognition particle GTPase; E=3e-09 PFAM: PF00005; ABC transporter; E=0.018 PF00931; NB-ARC domain; E=0.2 PF00004; ATPase associated with va; E=0.13 NP_868300.1 PMID: 8097015 best DB hits: BLAST: ddbj:BAB06157.1; (AP001515) flagella-associated protein [Bacillus; E=1e-119 pir:C72319; flagellar biosynthesis protein FlhA - Thermotoga; E=1e-115 swissprot:P35620; FLHA_BACSU FLAGELLAR BIOSYNTHESIS PROTEIN FLHA; E=1e-114 COG: BH2438; COG1298 Flagellar biosynthesis/type III secretory pathway; E=1e-120 PFAM: PF00771; FHIPEP family; E=1.6e-261 NP_868303.1 PMID: 1835671 best DB hits: BLAST: swissprot:P54744; PKNB_MYCLE SERINETHREONINE-PROTEIN; E=2e-35 pir:T36501; probable serinethreonine protein kinase - Streptomyces; E=2e-34 embl:CAB94054.1; (AL358672) serinethreonine-protein; E=4e-34 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=2e-33 PFAM: PF00069; Protein kinase domain; E=3e-52 PF00191; Annexin; E=0.78 NP_868305.1 PMID: 97158661 best DB hits: BLAST: gb:AAB68787.1; (U97022) orf; similar to the Staphylococcus aureus; E=6e-35 gb:AAK06020.1; AE006422_9 (AE006422) HYPOTHETICAL PROTEIN; E=2e-29 ddbj:BAB04894.1; (AP001511) CMP-binding protein [Bacillus; E=1e-28 PFAM: PF01336; OB-fold nucleic acid binding domain; E=1.4e-05 PF01966; HD domain; E=1.1e-10 NP_868306.1 best DB hits: BLAST: pir:E83522; conserved hypothetical protein PA0976 [imported] -; E=6e-63 embl:CAB50783.1; (X74218) hypothetical protein [Pseudomonas; E=3e-62 pir:B82628; transcriptional regulator XF1858 [imported] - Xylella; E=1e-60 COG: PA0976; COG0603 Predicted ATPase (PP-loop superfamily), confers; E=6e-64 XF0999; COG0137 Argininosuccinate synthase; E=3e-04 PFAM: PF02568; Thiamine biosynthesis protein; E=0.087 PF00733; Asparagine synthase; E=0.26 PF00764; Arginosuccinate synthase; E=0.00022 NP_868308.1 best DB hits: BLAST: embl:CAB77251.1; (AJ249487) accumulation-associated protein; E=0.75 NP_868312.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide NP_868314.1 best DB hits: BLAST: gb:AAD19720.1; (AF124349) unknown [Zymomonas mobilis]; E=0.54 PFAM: PF00076; RNA recognition motif. (a.k.a. RRM,; E=0.54 NP_868321.1 PMID: 9342321 best DB hits: BLAST: ddbj:BAB04384.1; (AP001509) glutamyl-tRNA (Gln); E=2e-13 swissprot:O67904; GATC_AQUAE GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE; E=6e-11 swissprot:O06492; GATC_BACSU GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE; E=7e-10 COG: BH0665; COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; E=2e-14 BS_yerL; COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C; E=8e-11 PA4482; COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; E=2e-08 PFAM: PF02686; Glu-tRNAGln amidotransferase C su; E=3e-15 NP_868323.1 PMID: 11298281 best DB hits: BLAST: gb:AAF81068.1; AF223364_3 (AF223364) protein phosphatase 1; E=9e-32 pir:E71538; hypothetical protein CT259 - Chlamydia trachomatis; E=4e-28 pir:H75265; conserved hypothetical protein - Deinococcus radiodurans; E=5e-28 COG: CT259; COG0631 Protein serine/threonine phosphatases; E=4e-29 PFAM: PF00481; Protein phosphatase 2C; E=4.9e-09 NP_868324.1 PMID: 8978088 best DB hits: BLAST: pir:B82211; peptidase, M20A family VC1343 [imported] - Vibrio; E=1e-34 swissprot:P54542; YQJE_BACSU HYPOTHETICAL 39.7 KD PROTEIN IN; E=2e-32 ddbj:BAB05188.1; (AP001512) BH1469~unknown conserved protein; E=7e-32 COG: VC1343; COG2195 Di- and tripeptidases; E=1e-35 PA5390; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate; E=5e-07 HI1348; COG2195 Di- and tripeptidases; E=5e-06 PFAM: PF01546; Peptidase M20/M25/M40; E=6.8e-20 NP_868327.1 best DB hits: BLAST: pir:F82221; conserved hypothetical protein VC1259 [imported] -; E=7e-86 pir:D83539; conserved hypothetical protein PA0858 [imported] -; E=4e-81 pir:G75436; conserved hypothetical protein - Deinococcus radiodurans; E=2e-67 COG: VC1259; COG1054 Uncharacterized enzyme related to sulfurtransferases; E=6e-87 sll0765; COG1054 Uncharacterized enzyme related to; E=5e-67 RP125; COG1054 Uncharacterized enzyme related to sulfurtransferases; E=2e-49 PFAM: PF00581; Rhodanese-like domain; E=1.5e-17 NP_868328.1 best DB hits: PFAM: PF00602; Influenza RNA-dependent RNA poly; E=0.35 NP_868329.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway NP_868330.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence NP_868334.1 PMID: 7916624 PMID: 2424788 best DB hits: BLAST: pir:S77252; phosphorylase (EC 2.4.1.1) 2 - Synechocystis sp. (strain; E=0.0 swissprot:P73511; PHSG_SYNY3 GLYCOGEN PHOSPHORYLASE ----- pir:; E=0.0 gb:AAD30476.1; AF124787_1 (AF124787) muscle glycogen phosphorylase; E=0.0 COG: slr1367; COG0058 Glucan phosphorylase; E=0.0 PFAM: PF00343; Carbohydrate phosphorylase; E=0 NP_868335.1 best DB hits: BLAST: gb:AAD45539.1; U70376_1 (U70376) InsA [Streptomyces netropsis]; E=5e-33 gb:AAG60893.1; AF322013_12 (AF322013) ID460 [Bradyrhizobium; E=8e-33 ddbj:BAA19966.1; (D63923) transposase [Acetobacter pasteurianus]; E=1e-26 NP_868338.1 PMID: 11481431 NP_868341.1 PMID: 8472961 PMID: 7836307 PMID: 10452953 PMID: 1901561 best DB hits: BLAST: embl:CAB52498.1; (AJ131519) DEAH-family helicase; E=1e-11 swissprot:P24125; V51K_BPL79 51.5 KD PROTEIN ----- pir: JU0445; E=5e-10 embl:CAB63670.1; (AJ251789) hypothetical protein [Lactobacillus; E=1e-08 COG: VC0812_2; COG1061 DNA or RNA helicases of superfamily II; E=1e-08 DR1624; COG0513 Superfamily II DNA and RNA helicases; E=5e-04 PFAM: PF00270; DEAD/DEAH box helicase; E=0.024 PF00271; Helicase conserved C-terminal doma; E=5.5e-07 NP_868342.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion NP_868343.1 catalyzes the formation of thymidine 5'-phosphate from thymidine NP_868344.1 PMID: 9603904 best DB hits: BLAST: ddbj:BAB07272.1; (AP001519) ribonuclease R [Bacillus halodurans]; E=6e-88 swissprot:O32231; RNR_BACSU RIBONUCLEASE R (RNASE R) (VACB PROTEIN; E=8e-84 gb:AAK05040.1; AE006328_8 (AE006328) ribonuclease [Lactococcus; E=3e-76 COG: BH3553_1; COG0557 Exoribonucleases; E=1e-76 PFAM: PF00773; RNB-like protein; E=2e-87 PF00575; S1 RNA binding domain; E=3.2e-08 NP_868345.1 Modulates the activities of several enzymes which are inactive in their acetylated form NP_868347.1 best DB hits: BLAST: pir:T37061; probable secreted protein - Streptomyces coelicolor; E=2e-27 pir:T35483; hypothetical protein SC6C5.12c SC6C5.12c - Streptomyces; E=2e-16 pir:T35506; hypothetical protein SC6E10.19c - Streptomyces; E=9e-11 COG: DR2293; COG3021 Uncharacterized BCR; E=7e-04 PFAM: PF01260; AP endonuclease 1; E=0.88 NP_868349.1 best DB hits: BLAST: embl:CAB57873.1; (AJ132579) coat protein readthrough [Oat golden; E=0.10 embl:CAB57874.1; (AJ132579) coat protein [Oat golden stripe; E=0.10 NP_868350.1 best DB hits: BLAST: pir:H83475; probable transcriptional regulator PA1359 [imported] -; E=0.067 embl:CAA64677.1; (X95394) aldehyde dehydrogenase-like protein; E=0.52 COG: PA1359; COG1396 Predicted transcriptional regulators; E=0.006 PFAM: PF01381; Helix-turn-helix; E=7.3e-11 NP_868352.1 best DB hits: PFAM: PF00583; Acetyltransferase (GNAT) family; E=0.72 NP_868354.1 PMID: 9086272 best DB hits: BLAST: swissprot:P94461; PRIA_BACSU PRIMOSOMAL PROTEIN N' (REPLICATION; E=1e-130 embl:CAA71348.1; (Y10304) priA [Bacillus subtilis]; E=1e-123 swissprot:P74397; PRIA_SYNY3 PRIMOSOMAL PROTEIN N' (REPLICATION; E=1e-112 COG: BS_priA; COG1198 Primosomal protein N' (replication factor Y) -; E=1e-131 PFAM: PF00005; ABC transporter; E=0.66 PF01443; Viral (Superfamily 1) RNA hel; E=0.33 PF00271; Helicase conserved C-terminal; E=7.8e-09 NP_868358.1 PMID: 9634230 best DB hits: BLAST: pir:F70837; probable sulfatase (EC 3.1.6.-) atsG - Mycobacterium; E=1e-40 gb:AAF55607.1; (AE003724) CG14291 gene product [Drosophila; E=1e-20 gb:AAF29467.1; (AF156255) N-sulfoglucosamine sulfohydrolase [Mus; E=3e-20 COG: Rv0296c; COG3119 Arylsulfatase A and related enzymes; E=1e-41 BH1718; COG1413 Phycocyanin alpha-subunit phycocyanobilin lyase and; E=0.010 PFAM: PF00884; Sulfatase; E=5.2e-22 NP_868359.1 PMID: 10844693 PMID: 10712688 best DB hits: BLAST: pir:T44945; hypothetical protein 6 [imported] - Natronobacterium; E=1e-48 swissprot:Q9RPF3; MNT1_PSEAE MANGANESE TRANSPORT PROTEIN MNTH1; E=1e-18 pir:B83105; probable transport protein PA4334 [imported] -; E=1e-18 COG: PA4334; COG1914 Mn2+ and Fe2+ transporters of the NRAMP family; E=1e-19 PFAM: PF01566; Natural resistance-associated macrop; E=0.00026 NP_868360.1 best DB hits: BLAST: pir:F70844; probable fusion protein - Mycobacterium tuberculosis; E=1e-07 embl:CAC04235.1; (AL391515) conserved hypothetical protein; E=2e-04 pir:E83611; conserved hypothetical protein PA0269 [imported] -; E=0.020 COG: Rv3327_2; COG2128 Uncharacterized ACR; E=1e-08 NP_868362.1 PMID: 98027367 best DB hits: BLAST: embl:CAA04438.1; (AJ000978) cistrans isomerase [Pseudomonas; E=0.030 gb:AAD41252.1; AF110738_2 (AF110738) Cti [Pseudomonas putida]; E=0.030 gb:AAD41255.1; AF110739_2 (AF110739) Cti [Pseudomonas putida]; E=0.030 NP_868363.1 best DB hits: BLAST: gb:AAK03766.1; (AE006204) unknown [Pasteurella multocida]; E=0.72 NP_868364.1 PMID: 87307953 best DB hits: BLAST: pir:I39942; penicillinase antirepressor penJ - Bacillus; E=1e-07 swissprot:P12287; BLAR_BACLI REGULATORY PROTEIN BLAR1 -----; E=2e-07 NP_868365.1 best DB hits: BLAST: pir:S74550; hypothetical protein slr0240 - Synechocystis sp. (strain; E=2e-07 swissprot:Q47839; COPY_ENTHR COPAB ATPASES METAL-FIST TYPE; E=0.047 swissprot:O07127; YPTY_LACSK HYPOTHETICAL 16.5 KD PROTEIN IN PTSI; E=0.13 NP_868367.1 best DB hits: BLAST: pir:S75290; hypothetical protein sll1289 - Synechocystis sp. (strain; E=0.007 pir:G70687; hypothetical protein Rv1732c - Mycobacterium; E=0.037 ddbj:BAB05296.1; (AP001512) cytochrome c biogenesis (thioredoxin); E=0.53 COG: sll1289; COG0526 Thiol-disulfide isomerase and thioredoxins; E=7e-04 NP_868368.1 PMID: 10894752 best DB hits: BLAST: swissprot:O66452; NADD_AQUAE PROBABLE NICOTINATE-NUCLEOTIDE; E=2e-23 swissprot:P52085; NADD_ECOLI NICOTINATE-NUCLEOTIDE; E=7e-23 gb:AAG54973.1; AE005243_2 (AE005243) orf, hypothetical protein; E=1e-22 COG: aq_036; COG1057 Nicotinic acid mononucleotide adenylyltransferase; E=2e-24 NP_868369.1 best DB hits: BLAST: swissprot:P72873; Y925_SYNY3 HYPOTHETICAL 23.0 KD PROTEIN sll0925; E=3e-25 gb:AAC26156.1; (AF035751) hypothetical protein [Synechococcus sp.; E=2e-24 swissprot:P72821; YC90_SYNY3 HYPOTHETICAL 21.6 KD PROTEIN SLR1290; E=5e-24 NP_868371.1 PMID: 6806564 best DB hits: BLAST: swissprot:P21475; RS18_BACSU 30S RIBOSOMAL PROTEIN S18 (BS21); E=1e-08 pir:S66013; ribosomal protein S18 (rpsR) - Bacillus subtilis; E=1e-08 pir:R3BS18; ribosomal protein S18 - Bacillus stearothermophilus; E=1e-08 COG: BS_rpsR; COG0238 Ribosomal protein S18; E=1e-09 PFAM: PF01084; Ribosomal protein S18; E=2e-16 NP_868372.1 PMID: 9837940 best DB hits: BLAST: ddbj:BAB05718.1; (AP001514) 4-hydroxybenzoyl-CoA thioesterase; E=3e-07 swissprot:O67466; YE94_AQUAE HYPOTHETICAL PROTEIN AQ_1494 -----; E=6e-06 pir:B83525; conserved hypothetical protein PA0968 [imported] -; E=7e-06 COG: BH1999; COG0824 Predicted thioesterase; E=3e-08 NP_868375.1 PMID: 8083178 PMID: 7590316 PMID: 9765558 best DB hits: BLAST: pir:B70423; transcriptional regulator FurR family - Aquifex aeolicus; E=2e-15 swissprot:P48796; FUR_CAMJE FERRIC UPTAKE REGULATION PROTEIN; E=7e-13 swissprot:Q51008; FUR_NEIGO FERRIC UPTAKE REGULATION PROTEIN; E=8e-13 COG: aq_1418; COG0735 Fe2+/Zn2+ uptake regulation proteins; E=2e-16 PFAM: PF01475; Ferric uptake regulator family; E=1.5e-22 NP_868376.1 best DB hits: BLAST: swissprot:P46726; CYSQ_MYCLE CYSQ PROTEIN HOMOLOG ----- pir:; E=0.66 NP_868377.1 PMID: 20528325 best DB hits: BLAST: ddbj:BAA24923.1; (AB011029) lysineornithine decarboxylase; E=5e-59 ddbj:BAA83427.1; (AB031066) ornithine decarboxylase [Nicotiana; E=1e-46 pir:T03035; ornithine decarboxylase (EC 4.1.1.17) - common tobacco; E=1e-46 COG: aq_728; COG0019 Diaminopimelate decarboxylase; E=8e-44 PFAM: PF02784; Pyridoxal-dependent decarboxy; E=4e-55 PF00278; Pyridoxal-dependent decarboxy; E=1.8e-17 NP_868378.1 best DB hits: BLAST: gb:AAG36945.1; (AF276872) sodium and chloride-dependent; E=8e-26 embl:CAC03719.1; (AJ401467) high affinity choline transporter; E=1e-25 ddbj:BAA90484.1; (AB030947) high-affinity choline transporter; E=2e-25 COG: PA1418; COG0591 Na+/proline, Na+/panthothenate symporters and; E=7e-20 panF; COG0591 Na+/proline, Na+/panthothenate symporters and related; E=3e-10 PFAM: PF00474; Sodium:solute symporter family; E=4.5e-05 NP_868381.1 PMID: 7925971 PMID: 8163020 best DB hits: BLAST: pir:C83123; peptidyl-prolyl cis-trans isomerase C2 PA4176; E=5e-28 gb:AAG33124.1; AF247689_1 (AF247689) parvulin; E=1e-22 gb:AAG33121.1; AF247686_1 (AF247686) parvulin; E=1e-22 COG: PA4176; COG0760 Parvulin-like peptidyl-prolyl isomerase; E=6e-29 PFAM: PF00639; PPIC-type PPIASE domain.; E=3.1e-24 NP_868384.1 PMID: 3042771 PMID: 2406271 PMID: 1495415 best DB hits: BLAST: pir:F72029; phosphatidylserine decarboxylase (EC 4.1.1.65) precursor; E=3e-65 pir:D81745; probable phosphatidylserine decarboxylase (EC 4.1.1.65); E=7e-65 pir:E71482; phosphatidylserine decarboxylase (EC 4.1.1.65) precursor; E=9e-61 COG: CPn0839; COG0688 Phosphatidylserine decarboxylase; E=3e-66 PFAM: PF02666; Phosphatidylserine decarboxyla; E=1.9e-61 NP_868385.1 best DB hits: BLAST: pir:T35585; hypothetical protein SC6G4.34 - Streptomyces coelicolor; E=4e-08 embl:CAB88460.1; (AL353815) hypothetical protein SCD6.31c; E=8e-05 pir:C83475; hypothetical protein PA1354 [imported] - Pseudomonas; E=0.002 NP_868386.1 best DB hits: BLAST: pir:T35586; hypothetical protein SC6G4.35 SC6G4.35 - Streptomyces; E=2e-47 pir:G83477; probable sigma-70 factor, ECF subfamily PA1351; E=8e-45 swissprot:Q52997; YDNY_RHIME HYPOTHETICAL 47.0 KDA PROTEIN IN DNAA; E=1e-35 COG: PA1351_1; COG1595 DNA-directed RNA polymerase specialized sigma; E=2e-17 NP_868389.1 PMID: 8432708 best DB hits: BLAST: swissprot:Q45585; SIGW_BACSU RNA POLYMERASE SIGMA FACTOR SIGW; E=3e-23 gb:AAF18265.1; U22895_1 (U22895) alternative sigma factor AlgU; E=6e-18 ddbj:BAB03982.1; (AP001507) RNA polymerase ECF-type sigma factor; E=2e-17 COG: BS_sigW; COG1595 DNA-directed RNA polymerase specialized sigma; E=3e-24 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=9.9e-15 NP_868390.1 best DB hits: BLAST: pir:A75321; prepilin peptidase, type IV - Deinococcus radiodurans; E=4e-16 swissprot:P72640; LEP4_SYNY3 TYPE 4 PREPILIN-LIKE PROTEINS LEADER; E=3e-15 ddbj:BAA83726.1; (AB017809) prepilin peptidase [Escherichia coli]; E=3e-14 COG: DR2065; COG1989 Signal peptidase, cleaves prepilin-like proteins; E=4e-17 PFAM: PF01478; Type III leader peptidase famil; E=8.9e-28 NP_868391.1 PMID: 7813451 PMID: 2668276 best DB hits: BLAST: swissprot:P12769; PHR_METTH DEOXYRIBODIPYRIMIDINE PHOTOLYASE (DNA; E=3e-58 gb:AAF81696.1; AF246697_1 (AF246697) CPD-photolyase [Fowlpox; E=1e-54 swissprot:P34205; PHR_CARAU DEOXYRIBODIPYRIMIDINE PHOTOLYASE (DNA; E=6e-54 COG: MTH904; COG0415 Deoxyribodipyrimidine photolyase; E=3e-59 PFAM: PF00875; DNA photolyase; E=0.0034 NP_868394.1 PMID: 99397451 best DB hits: BLAST: ddbj:BAB09588.1; (AB018118) gene_id:MRI1.6~pir D64592~similar to; E=5e-46 gb:AAG35309.1; AF274868_1 (AF274868) sialidase NanB [Pasteurella; E=0.050 pir:D64592; hypothetical protein HP0580 - Helicobacter pylori; E=0.42 PFAM: PF02012; BNR repeat; E=0.88 NP_868397.1 best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=4e-04 swissprot:P77774; YFGL_ECOLI HYPOTHETICAL 41.9 KD PROTEIN IN; E=0.004 gb:AAG20856.1; (AE005154) Vng6189h [Halobacterium sp. NRC-1]; E=0.007 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=4e-05 PFAM: PF01011; PQQ enzyme repeat; E=0.03 NP_868400.1 PMID: 1333566 best DB hits: BLAST: pir:F69031; homoserine dehydrogenase (EC 1.1.1.3) - Methanobacterium; E=4e-81 gb:AAF21129.1; L78665_3 (L78665) homoserine dehydrogenase; E=2e-80 swissprot:P29365; DHOM_PSEAE HOMOSERINE DEHYDROGENASE (HDH); E=1e-77 COG: MTH1232; COG0460 Homoserine dehydrogenase; E=4e-82 PFAM: PF02737; 3-hydroxyacyl-CoA dehydrogenase; E=0.85 PF02254; KTN NAD-binding domain; E=0.19 PF01408; Oxidoreductase, NAD-bind; E=0.73 NP_868404.1 best DB hits: BLAST: swissprot:P54545; YQJH_BACSU HYPOTHETICAL 47.0 KD PROTEIN IN; E=0.15 PFAM: PF00817; impB/mucB/samB family; E=0.87 NP_868405.1 PMID: 10984043 best DB hits: BLAST: pir:D83024; probable secretion protein PA4974 [imported] -; E=0.28 pir:A82540; outer membrane export factor XF2586 [imported] - Xylella; E=0.31 pir:B83071; hypothetical protein PA4592 [imported] - Pseudomonas; E=0.45 PFAM: PF02321; Outer membrane efflux protein; E=8.2e-07 NP_868406.1 best DB hits: PFAM: PF00559; Retroviral Vif (Viral infectivity) p; E=0.47 NP_868409.1 best DB hits: BLAST: embl:CAB76071.1; (AL157953) rRNA methylase [Streptomyces; E=1e-22 swissprot:Q10543; Y881_MYCTU HYPOTHETICAL TRNARRNA; E=7e-18 pir:C82904; rRNA methylase UU327 [imported] - Ureaplasma urealyticum; E=3e-14 COG: Rv0881; COG0566 rRNA methylases; E=7e-19 PFAM: PF00588; SpoU rRNA Methylase; E=2.6e-26 NP_868410.1 PMID: 8969504 best DB hits: BLAST: pir:E71667; 2-acylglycerophosphoethanolamine acyltransferase (aas); E=6e-18 gb:AAG19674.1; (AE005055) Vng1339c [Halobacterium sp. NRC-1]; E=5e-17 pir:A69831; probable acid--CoA ligase (EC 6.2.1.-) yhfL [similarity]; E=8e-17 COG: RP620_3; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases; E=5e-19 VNG1339C; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid; E=5e-18 BS_yhfL; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases; E=7e-18 PFAM: PF00501; AMP-binding enzyme; E=1.3e-08 PF01781; Ribosomal L38e protein family; E=0.56 NP_868412.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_868415.1 best DB hits: BLAST: pir:D64585; cag pathogenicity island protein cag5 - Helicobacter; E=0.63 pir:F71927; cag island protein, DNA transfer protein - Helicobacter; E=0.63 gb:AAF80195.1; AF282852_5 (AF282852) Cag-beta [Helicobacter; E=0.63 NP_868416.1 PMID: 9649434 PMID: 9546395 best DB hits: BLAST: swissprot:O05523; YDIJ_BACSU HYPOTHETICAL 29.1 KDA PROTEIN IN; E=4e-18 swissprot:Q9ZM59; TATC_HELPJ SEC-INDEPENDENT PROTEIN TRANSLOCASE; E=6e-18 swissprot:Q9ZCG6; TATC_RICPR SEC-INDEPENDENT PROTEIN TRANSLOCASE; E=7e-18 COG: BS_ydiJ; COG0805 Sec-independent protein secretion pathway component; E=4e-19 VNG2267G; COG0805 Sec-independent protein secretion pathway; E=9e-06 PFAM: PF00902; MttB family UPF0032; E=4.5e-35 NP_868417.1 best DB hits: BLAST: pir:H75163; intracellular proteinase (pfpi) PAB0311 - Pyrococcus; E=1e-30 pir:F72722; hypothetical protein APE0319 - Aeropyrum pernix (strain; E=4e-30 gb:AAB89965.1; (AE001016) intracellular protease (pfpI); E=2e-29 COG: PAB0311; COG0693 intracellular protease/amidase; E=1e-31 PFAM: PF01965; ThiJ/PfpI family; E=1.1e-39 NP_868422.1 best DB hits: BLAST: pir:A70418; conserved hypothetical protein aq_1359 - Aquifex; E=2e-08 pir:H75488; conserved hypothetical protein - Deinococcus radiodurans; E=5e-08 pir:B81033; N-acetylglutamate synthase NMB1876 [imported] -; E=9e-07 COG: aq_1359; COG1246 N-acetylglutamate synthase and related; E=2e-09 PFAM: PF00583; Acetyltransferase (GNAT) family; E=6e-15 NP_868423.1 best DB hits: BLAST: pir:E75542; probable endoglucanase - Deinococcus radiodurans (strain; E=6e-48 gb:AAG19796.1; (AE005064) endoglucanase; CelM [Halobacterium sp.; E=2e-47 pir:A69157; endo-1,4-beta-glucanase - Methanobacterium; E=8e-47 COG: DR0229; COG1363 Cellulase M and related proteins; E=6e-49 NP_868424.1 PMID: 9576794 best DB hits: BLAST: swissprot:O04905; UMPK_ARATH URIDYLATE KINASE (UK) (URIDINE; E=1e-30 pir:T47842; URIDYLATE KINASE-like protein - Arabidopsis thaliana; E=9e-30 gb:AAB27365.1; UMP kinase [Saccharomyces cerevisiae, Peptide, 204; E=1e-29 COG: YKL024c; COG0563 Adenylate kinase and related kinases; E=1e-30 PFAM: PF00406; Adenylate kinase; E=2.6e-39 NP_868425.1 PMID: 7005898 PMID: 7025207 PMID: 6256345 best DB hits: BLAST: pir:H83533; alanyl-tRNA synthetase PA0903 [imported] - Pseudomonas; E=1e-132 swissprot:O67323; SYA_AQUAE ALANYL-TRNA SYNTHETASE (ALANINE--TRNA; E=1e-130 pir:F75289; alanyl-tRNA synthetase - Deinococcus radiodurans (strain; E=1e-129 COG: PA0903; COG0013 Alanyl-tRNA synthetase; E=1e-133 PFAM: PF01411; tRNA synthetases class II (A); E=2.8e-255 PF02272; DHHA1 domain; E=5.4e-20 NP_868427.1 best DB hits: BLAST: pir:F65012; hypothetical protein b2385 - Escherichia coli (strain; E=1e-55 gb:AAG57511.1; AE005469_11 (AE005469) peptidase; E=1e-53 pir:D75419; proline dipeptidase - Deinococcus radiodurans (strain; E=1e-49 COG: ypdF; COG0006 Xaa-Pro aminopeptidase; E=1e-56 PFAM: PF00557; metallopeptidase M24; E=2.9e-50 NP_868428.1 PMID: 7592499 best DB hits: BLAST: pir:H69580; acetyl-CoA carboxylase (biotin carboxyl carrier subunit); E=1e-18 gb:AAB00182.1; (U36245) biotin carboxyl carrier protein [Bacillus; E=1e-17 swissprot:P49786; BCCP_BACSU BIOTIN CARBOXYL CARRIER PROTEIN OF; E=1e-17 COG: BS_accB; COG0511 Biotin carboxyl carrier protein of acetyl-CoA; E=1e-19 PFAM: PF00364; Biotin-requiring enzyme; E=1.5e-25 NP_868429.1 PMID: 8102363 best DB hits: BLAST: gb:AAB88214.1; (U59234) biotin carboxylase [Synechococcus sp. PCC; E=1e-139 swissprot:Q06862; ACCC_ANASP BIOTIN CARBOXYLASE (A SUBUNIT OF; E=1e-138 pir:S74380; biotin carboxylase accC - Synechocystis sp. (strain PCC; E=1e-136 COG: sll0053; COG0439 Biotin carboxylase; E=1e-137 PFAM: PF00289; Carbamoyl-phosphate synthase L; E=5.1e-48 PF02786; Carbamoyl-phosphate synthase L; E=1.4e-100 PF02785; Biotin carboxylase C-terminal; E=2.7e-58 NP_868430.1 best DB hits: BLAST: embl:CAA04730.1; (AJ001401) HpnA protein [Zymomonas mobilis]; E=3e-17 swissprot:P73212; DFRA_SYNY3 DIHYDROFLAVONOL-4-REDUCTASE; E=1e-13 pir:C83067; hypothetical protein PA4631 [imported] - Pseudomonas; E=3e-12 COG: slr1706; COG0451 Nucleoside-diphosphate-sugar epimerases; E=1e-14 PFAM: PF01370; NAD dependent epimerase/dehydra; E=0.51 PF01073; 3-beta hydroxysteroid dehydroge; E=1.6e-06 NP_868432.1 best DB hits: BLAST: embl:CAC17654.1; (AL450450) ECF sigma factor; E=0.003 ddbj:BAB03982.1; (AP001507) RNA polymerase ECF-type sigma; E=0.005 swissprot:Q45585; SIGW_BACSU RNA POLYMERASE SIGMA FACTOR SIGW; E=0.005 COG: BH0263; COG1595 DNA-directed RNA polymerase specialized sigma; E=4e-04 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=5.2e-10 NP_868433.1 PMID: 7774814 best DB hits: BLAST: pir:B70936; probable serinethreonine-specific protein kinase (EC; E=3e-31 embl:CAA18685.1; (AL022602) serinethreonine protein; E=5e-31 ddbj:BAB06223.1; (AP001515) serinethreonine protein kinase; E=6e-30 COG: Rv2176; COG0515 Serine/threonine protein kinases; E=3e-32 PFAM: PF00069; Protein kinase domain; E=1.2e-49 NP_868434.1 best DB hits: BLAST: pir:G82380; hypothetical protein VCA1075 [imported] - Vibrio; E=0.50 NP_868437.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate NP_868438.1 PMID: 10500158 PMID: 10636862 best DB hits: BLAST: swissprot:Q10784; GLBN_MYCTU HEMOGLOBIN HBN ----- pir: C70761; E=2e-18 gb:AAA29446.2; (M57542) hemoglobin major component [Paramecium; E=3e-09 swissprot:P15160; GLB_PARCA MYOGLOBIN (HEMOGLOBIN) ----- pir:; E=2e-08 COG: Rv1542c; COG2346 Hemoglobin-like proteins; E=2e-19 PFAM: PF01152; Protozoan/cyanobacterial globin; E=5.3e-25 NP_868439.1 PMID: 7952181 best DB hits: BLAST: swissprot:P42419; IOLI_BACSU IOLI PROTEIN ----- pir: A69646; E=0.026 COG: BS_iolI; COG1082 Predicted endonucleases; E=0.002 NP_868443.1 best DB hits: BLAST: pir:E75284; conserved hypothetical protein - Deinococcus radiodurans; E=1e-36 gb:AAK05795.1; AE006400_5 (AE006400) conserved hypothetical; E=1e-35 pir:T50502; hypothetical protein T22D6.110 - Arabidopsis thaliana; E=7e-34 COG: DR2359; COG2957 Peptidylarginine deiminase and related enzymes; E=1e-37 NP_868445.1 best DB hits: BLAST: pir:B53373; hypothetical protein 1 (rpoN 3' region) - Pseudomonas; E=0.004 pir:G82065; probable sigma-54 modulation protein VC2530 [imported]; E=0.005 swissprot:P17160; RP5M_AZOVI PROBABLE SIGMA(54) MODULATION; E=0.007 COG: VC2530; COG1544 Ribosome-associated protein Y (PSrp-1); E=5e-04 PFAM: PF02482; Sigma 54 modulation protein / S; E=0.0074 NP_868446.1 best DB hits: BLAST: ddbj:BAB04547.1; (AP001510) PTS system, fructose-specific enzyme; E=6e-19 gb:AAK05057.1; AE006330_5 (AE006330) fructose-specific PTS system; E=9e-18 ddbj:BAB03332.1; (AB035450) fructose specific permease; E=1e-16 COG: BH0828_1; COG1762 Phosphotransferase system; E=3e-19 TP0085; COG1762 Phosphotransferase system mannitol/fructose-specific; E=5e-16 NMB0736; COG1762 Phosphotransferase system; E=7e-14 PFAM: PF00359; Phosphoenolpyruvate-dependent suga; E=3.6e-13 NP_868447.1 PMID: 9172326 best DB hits: BLAST: swissprot:O83598; PTHP_TREPA PHOSPHOCARRIER PROTEIN HPR; E=8e-11 pir:D69607; catabolite repression protein crh [validated] -; E=1e-09 embl:CAB10076.1; (Z97203) histidine containing protein; E=2e-09 COG: TP0589; COG1925 Phosphotransferase system, HPr-related proteins; E=9e-12 PFAM: PF00381; PTS HPr component phosphorylation si; E=5.8e-25 NP_868449.1 PMID: 7670643 best DB hits: BLAST: swissprot:P42014; PT1_BACST PHOSPHOENOLPYRUVATE-PROTEIN; E=1e-108 swissprot:O83018; PT1_BACSP PHOSPHOENOLPYRUVATE-PROTEIN; E=1e-108 ddbj:BAB06792.1; (AP001517) PTS system, enzyme I [Bacillus; E=1e-106 COG: BH3073; COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI; E=1e-107 PFAM: PF00391; PEP-utilizing enzyme, mobile; E=4e-21 PF02896; PEP-utilizing enzyme, TIM bar; E=1.4e-115 NP_868450.1 best DB hits: BLAST: pir:S77440; hypothetical protein sll1084 - Synechocystis sp. (strain; E=2e-14 embl:CAB75381.1; (AL139298) hypothetical protein SCC88.11c; E=6e-09 pir:E72374; hypothetical protein - Thermotoga maritima (strain; E=4e-05 COG: sll1084; COG1032 Fe-S oxidoreductases family 2; E=2e-15 PFAM: PF02474; Nodulation protein A (NodA); E=0.78 NP_868452.1 PMID: 2011493 PMID: 8415644 PMID: 11328869 best DB hits: BLAST: pir:B82538; ribonuclease E XF2607 [imported] - Xylella fastidiosa; E=1e-100 pir:H83273; ribonuclease E PA2976 [imported] - Pseudomonas; E=7e-97 gb:AAK03075.1; (AE006138) Rne [Pasteurella multocida]; E=2e-95 COG: XF2607; COG1530 Ribonucleases G and E; E=1e-101 PFAM: PF00575; S1 RNA binding domain; E=3.6e-07 NP_868453.1 PMID: 10809675 best DB hits: BLAST: gb:AAF72520.1; AF248951_1 (AF248951) mucin-desulfating sulfatase; E=2e-56 pir:T44602; phosphonate monoester hydrolase (EC 3.1.3.-) PEH; E=3e-30 pir:F83354; probable sulfatase PA2333 [imported] - Pseudomonas; E=1e-26 COG: PA2333; COG3119 Arylsulfatase A and related enzymes; E=9e-28 PAB0793; COG2194 Predicted membrane-associated, metal-dependent; E=9e-08 VC2600; COG3083 Predicted hydrolase of alkaline phosphatase; E=9e-07 PFAM: PF00884; Sulfatase; E=2.6e-65 NP_868454.1 PMID: 9634230 best DB hits: BLAST: gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=8e-20 ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=3e-18 pir:F70837; probable sulfatase (EC 3.1.6.-) atsG - Mycobacterium; E=2e-15 COG: Rv0296c; COG3119 Arylsulfatase A and related enzymes; E=2e-16 BS_yvgJ; COG1368 Phosphoglycerol transferase and related proteins,; E=0.001 PAB0793; COG2194 Predicted membrane-associated, metal-dependent; E=0.002 PFAM: PF01663; Type I phosphodiesterase / nucle; E=0.89 PF00884; Sulfatase; E=7.3e-28 NP_868455.1 PMID: 2941757 PMID: 2211698 PMID: 9036855 best DB hits: BLAST: gb:AAC44462.1; (U60056) CbbBc [Ralstonia eutropha]; E=7e-98 pir:T35749; probable formate dehydrogenase - Streptomyces coelicolor; E=8e-96 pir:A82998; probable oxidoreductase PA5181 [imported] - Pseudomonas; E=7e-93 COG: PA5181; COG0243 Anaerobic dehydrogenases, typically; E=6e-94 MTH1552; COG3383 Uncharacterized anaerobic dehydrogenase; E=9e-45 PH1353; COG0243 Anaerobic dehydrogenases, typically; E=7e-38 PFAM: PF00384; Molybdopterin oxidoreductases; E=2e-36 PF01568; Molydopterin dinucleotide bin; E=1.7e-08 NP_868458.1 PMID: 7610180 PMID: 8617725 best DB hits: BLAST: pir:D81040; cytochrome c-type biogenesis protein, probable NMB1803; E=2e-18 pir:B81986; probable membrane protein NMA0660 [imported] - Neisseria; E=2e-18 pir:H71862; probable cytochrome C-type biogenesis protein -; E=7e-17 COG: NMB1803; COG0755 Cytochrome c-type biogenesis protein (heme exporter; E=2e-19 APE2274; COG1138 Cytochrome c biogenesis factor; E=5e-04 NMB1804; COG1333 ResB protein required for cytochrome c biosynthesis; E=0.002 PFAM: PF02590; Uncharacterized ACR, COG1576; E=0.15 PF01578; Cytochrome C assembly protein; E=0.036 NP_868460.1 PMID: 1479344 best DB hits: BLAST: pir:C83249; 3-demethylubiquinone-9 3-methyltransferase PA3171; E=0.004 swissprot:P08442; YAT1_SYNP6 ATP SYNTHASE SUBUNITS REGION ORF 1; E=0.055 pir:S76629; hypothetical protein - Synechocystis sp. (strain PCC; E=0.19 COG: PA3171; COG2227; E=3e-04 NP_868461.1 PMID: 10548741 best DB hits: BLAST: gb:AAB89983.1; (AE001017) phosphoribosylformylglycinamidine; E=2e-33 ddbj:BAA20816.1; (AB002359) KIAA0361 [Homo sapiens]; E=2e-26 swissprot:O15067; PUR4_HUMAN PHOSPHORIBOSYLFORMYLGLYCINAMIDINE; E=2e-26 COG: AF1260; COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase,; E=1e-34 NMB1996_2; COG0047 Phosphoribosylformylglycinamidine (FGAM); E=3e-22 HI0752_2; COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase,; E=1e-20 NP_868462.1 best DB hits: BLAST: pir:E69869; thioredoxin related protein ykvV - Bacillus subtilis; E=1e-07 pir:E69891; cytochrome c biogenesis protein CycX homolog homolog; E=4e-07 swissprot:P43221; TLPA_BRAJA THIOL:DISULFIDE INTERCHANGE PROTEIN; E=3e-06 COG: BS_ykvV; COG0526 Thiol-disulfide isomerase and thioredoxins; E=9e-09 PFAM: PF02369; Bacterial Ig-like domain (group 1); E=0.033 NP_868466.1 best DB hits: BLAST: pir:B70403; hypothetical protein aq_1194 - Aquifex aeolicus -----; E=0.009 swissprot:P72821; YC90_SYNY3 HYPOTHETICAL 21.6 KD PROTEIN SLR1290; E=0.013 pir:T34610; hypothetical protein SC10A7.07 - Streptomyces coelicolor; E=0.069 NP_868468.1 PMID: 2199330 best DB hits: BLAST: swissprot:Q58131; ARGD_METJA ACETYLORNITHINE AMINOTRANSFERASE; E=2e-23 swissprot:P30268; YKAB_BACFI PROBABLE AMINOTRANSFERASE IN KATA; E=3e-19 embl:CAC11216.1; (AL445063) L-2,; E=5e-19 COG: MJ0721; COG0160 PLP-dependent aminotransferases; E=2e-24 PFAM: PF00202; Aminotransferase class-III; E=1.7e-39 NP_868470.1 best DB hits: BLAST: pir:B69865; probable phosphoesterase (EC 3.1.-.-) ykuE - Bacillus; E=1e-16 gb:AAB08594.1; (U70214) hypothetical [Escherichia coli]; E=1e-15 pir:D64740; probable phosphoesterase (EC 3.1.-.-) yaeI - Escherichia; E=1e-15 COG: BS_ykuE; COG1408 Predicted phosphohydrolases; E=1e-17 PFAM: PF02549; DNA repair exonuclease; E=0.12 NP_868471.1 best DB hits: BLAST: pir:T36773; hypothetical protein SCI28.03c - Streptomyces coelicolor; E=2e-12 pir:T49094; hypothetical protein F4F15.260 - Arabidopsis thaliana; E=5e-12 swissprot:Q11043; YC76_MYCTU HYPOTHETICAL 16.5 KDA PROTEIN RV1276C; E=3e-08 COG: Rv1276c; COG2062 Phosphohistidine phosphatase SixA; E=3e-09 slr1124; COG0406 Phosphoglycerate mutase/fructose-2,6-bisphosphatase; E=0.001 Cj1002c; COG2062 Phosphohistidine phosphatase SixA; E=0.002 PFAM: PF00300; Phosphoglycerate mutase; E=0.013 NP_868472.1 best DB hits: BLAST: gb:AAG20856.1; (AE005154) Vng6189h [Halobacterium sp. NRC-1]; E=5e-05 pir:H69064; serinethreonine protein kinase related protein -; E=0.005 pir:C82804; conserved hypothetical protein XF0464 [imported] -; E=0.053 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=5e-04 PFAM: PF01011; PQQ enzyme repeat; E=0.27 NP_868474.1 best DB hits: BLAST: gb:AAF29108.1; AF161493_1 (AF161493) HSPC144 [Homo sapiens]; E=7e-35 gb:AAG43118.1; AF059619_1 (AF059619) My005 protein [Homo sapiens]; E=7e-35 pir:C82610; conserved hypothetical protein XF2014 [imported] -; E=3e-31 COG: XF2014; COG2947 Uncharacterized BCR; E=3e-32 NP_868477.1 PMID: 8694762 best DB hits: BLAST: pir:T02489; peptidylprolyl isomerase (EC 5.2.1.8) F23F1.12 -; E=2e-55 pir:T50837; cyclophilin CYP5 [imported] - Arabidopsis thaliana; E=3e-55 pir:T50838; cyclophilin ROC7 [imported] - Arabidopsis thaliana; E=1e-53 COG: slr1251; COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) -; E=6e-54 PFAM: PF00160; Cyclophilin type peptidyl-proly; E=1.4e-105 NP_868478.1 best DB hits: BLAST: pir:S75346; hypothetical protein slr2013 - Synechocystis sp. (strain; E=2e-34 pir:D83106; hypothetical protein PA4323 [imported] - Pseudomonas; E=3e-33 ddbj:BAB04451.1; (AP001509) BH0732~unknown conserved protein in; E=9e-31 COG: slr2013; COG1721 Uncharacterized ACR; E=2e-35 PFAM: PF01882; Protein of unknown function DUF; E=5.3e-19 NP_868483.1 best DB hits: BLAST: pir:H71366; probable thioredoxin - syphilis spirochete ----- gb:; E=2e-11 gb:AAD00775.1; (U95250) thioredoxin [Treponema pallidum]; E=2e-11 ddbj:BAB06587.1; (AP001516) thioldisulfide interchange protein; E=7e-09 COG: TP0100; COG0526 Thiol-disulfide isomerase and thioredoxins; E=2e-12 XF2174; COG3118 Thioredoxin domain-containing protein; E=7e-07 XF1990; COG0526 Thiol-disulfide isomerase and thioredoxins; E=1e-06 PFAM: PF00085; Thioredoxin; E=0.34 NP_868484.1 best DB hits: BLAST: pir:S76850; hypothetical protein - Synechocystis sp. (strain PCC; E=0.56 NP_868485.1 best DB hits: BLAST: gb:AAF23289.1; AC016661_14 (AC016661) oxidoreductase; E=1e-52 gb:AAG19065.1; (AE005005) Vng0542c [Halobacterium sp. NRC-1]; E=2e-45 pir:C75327; oxidoreductase, FAD-binding - Deinococcus radiodurans; E=2e-41 COG: VNG0542C; COG1233 Phytoene dehydrogenase and related proteins; E=2e-46 PFAM: PF00070; Pyridine nucleotide-disulphide; E=0.041 PF01593; Flavin containing amine oxidase; E=2.5e-05 PF01494; FAD binding domain; E=0.0013 NP_868486.1 best DB hits: BLAST: ddbj:BAA33615.1; (AB012956) unknown [Vibrio cholerae]; E=6e-99 pir:F82345; conserved hypothetical protein VC0264 [imported] -; E=9e-96 gb:AAD54657.1; AF090685_1 (AF090685) hypothetical protein [Vibrio; E=7e-67 COG: VC0264; COG1236 Predicted exonuclease of the beta-lactamase fold; E=9e-97 MJ1236; COG1782 Predicted metal-dependent RNase, consists of a; E=4e-39 MJ0162; COG1236 Predicted exonuclease of the beta-lactamase fold; E=1e-26 PFAM: PF00753; Metallo-beta-lactamase superfami; E=9.3e-07 NP_868489.1 best DB hits: BLAST: gb:AAG20046.1; (AE005084) Vng1839h [Halobacterium sp. NRC-1]; E=3e-46 embl:CAC11174.1; (AL445063) hypothetical protein [Thermoplasma; E=3e-40 pir:E72334; conserved hypothetical protein - Thermotoga maritima; E=6e-29 COG: VNG1839H; COG3367 Uncharacterized ACR; E=3e-47 NP_868490.1 PMID: 2583528 best DB hits: BLAST: gb:AAG20045.1; (AE005084) chloromuconate cycloisomerase; YkfB1; E=3e-38 pir:H64881; hypothetical protein b1325 - Escherichia coli -----; E=1e-24 swissprot:P51981; YCJG_ECOLI HYPOTHETICAL 34.7 KD PROTEIN IN; E=8e-24 COG: VNG1837G; COG1441 O-succinylbenzoate synthase and related enzymes; E=3e-39 PFAM: PF02746; Mandelate racemase / muconate lacton; E=0.00038 PF01188; Mandelate racemase / muconate lacton; E=9.6e-23 NP_868491.1 best DB hits: BLAST: pir:A83422; hypothetical protein PA1797 [imported] - Pseudomonas; E=4e-34 pir:G75201; probable beta-lactamase (EC 3.5.2.6) PAB0087 -; E=3e-29 gb:AAF86053.1; AF210139_1 (AF210139) fmtA-like protein; E=4e-28 COG: PA1797; COG1680 Beta-lactamase class C and other penicillin binding; E=3e-35 ddpX; COG2173 D-alanyl-D-alanine dipeptidase; E=6e-16 Rv0399c; COG1680 Beta-lactamase class C and other penicillin binding; E=6e-14 PFAM: PF01427; D-ala-D-ala dipeptidase; E=3.1e-32 NP_868493.1 best DB hits: PFAM: PF02774; Semialdehyde dehydrogenase, d; E=0.16 NP_868494.1 best DB hits: BLAST: gb:AAF81232.1; (AF263012) ABC transporter ATP binding protein; E=4e-31 pir:C72303; ABC transporter ATP-binding protein - Thermotoga; E=5e-29 pir:T36523; probable ABC-type transport system ATP-binding protein -; E=1e-28 COG: TM1028; COG1131 ABC-type multidrug transport system, ATPase; E=5e-30 PFAM: PF00005; ABC transporter; E=4.5e-39 NP_868495.1 PMID: 7612925 best DB hits: BLAST: pir:G69999; transcriptional regulator GntR related protein ytrA -; E=7e-17 swissprot:P54590; YHCF_BACSU HYPOTHETICAL TRANSCRIPTIONAL; E=1e-11 pir:D72336; transcriptional regulator, GntR family - Thermotoga; E=5e-11 COG: BS_ytrA; COG1725 Predicted transcriptional regulators; E=7e-18 PA0268; COG1167 Transcriptional regulators containing a; E=1e-08 BH1940; COG1167 Transcriptional regulators containing a DNA-binding; E=1e-08 PFAM: PF01047; MarR family; E=0.01 PF00392; Bacterial regulatory proteins, gntR; E=5.7e-17 NP_868498.1 PMID: 99328972 best DB hits: BLAST: gb:AAD41810.1; AF144091_4 (AF144091) sigma factor SigH; E=7e-06 pir:H75550; RNA polymerase sigma-E factor - Deinococcus radiodurans; E=3e-05 swissprot:O05843; RPOE_MYCTU RNA POLYMERASE SIGMA-E FACTOR; E=8e-05 COG: DR0180; COG1595 DNA-directed RNA polymerase specialized sigma; E=3e-06 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=0.0092 NP_868501.1 PMID: 95369727 PMID: 1971619 best DB hits: BLAST: pir:A82078; type IV pilin biogenesis protein PilC VC2425 [imported]; E=8e-09 gb:AAB65806.1; (U17138) FimO [Dichelobacter nodosus]; E=3e-06 swissprot:P22609; PILC_PSEAE FIMBRIAL ASSEMBLY PROTEIN PILC; E=2e-05 COG: VC2425; COG1459 General secretory pathway protein F; E=7e-10 PFAM: PF00482; Bacterial type II secretion syst; E=8.1e-08 NP_868502.1 PMID: 8820654 best DB hits: BLAST: gb:AAC23568.1; (AF059249) type IV pilus assembly protein TapC; E=2e-04 swissprot:P45793; TAPC_AERHY TYPE IV PILUS ASSEMBLY PROTEIN TAPC; E=5e-04 pir:S77585; pilus assembly protein pilG - Neisseria gonorrhoeae; E=0.036 PFAM: PF00482; Bacterial type II secretion system; E=0.0045 NP_868506.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_868509.1 PMID: 9403685 best DB hits: BLAST: swissprot:O51357; RL33_BORBU 50S RIBOSOMAL PROTEIN L33 -----; E=0.32 PFAM: PF00471; Ribosomal protein L33; E=0.00011 NP_868510.1 PMID: 1987126 PMID: 2649886 best DB hits: BLAST: ddbj:BAB04959.1; (AP001511) single-strand DNA-specific; E=5e-91 pir:H69980; single-strand DNA-specific exonuclease homolog yrvE -; E=3e-88 pir:D72062; single-stranded-DNA-specific exonuclease RecJ CP0187; E=3e-73 COG: BH1240_1; COG0608 Single-stranded DNA-specific exonuclease; E=5e-92 PFAM: PF01368; DHH family; E=3e-41 PF02272; DHHA1 domain; E=0.00061 NP_868511.1 Converts D-mannonate to D-mannuronate NP_868512.1 PMID: 8157608 best DB hits: BLAST: pir:G72422; 2-keto-3-deoxygluconate kinase - Thermotoga maritima; E=1e-15 embl:CAB61818.1; (AL133236) sugar kinase [Streptomyces; E=2e-08 pir:D83362; probable 2-ketogluconate kinase PA2261 [imported] -; E=2e-06 COG: TM0067; COG0524 Sugar kinases, ribokinase; E=1e-16 PFAM: PF00294; pfkB family carbohydrate kinase; E=3.8e-10 NP_868518.1 PMID: 2105742 PMID: 8046752 best DB hits: BLAST: ddbj:BAB05377.1; (AP001512) chorismate mutase [Bacillus; E=6e-26 gb:AAD33790.1; AF139534_1 (AF139534) chorismate mutase [Bacillus; E=5e-25 swissprot:P19080; CHMU_BACSU CHORISMATE MUTASE (CM) ----- pir:; E=1e-22 NP_868520.1 PMID: 2722750 best DB hits: BLAST: swissprot:P12626; ANFA_AZOVI NITROGEN FIXATION PROTEIN ANFA; E=1e-64 pir:A48291; ornithine decarboxylase inhibitor - Escherichia coli; E=7e-61 swissprot:Q06065; ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY; E=7e-61 COG: atoC; COG2204 AAA superfamily ATPases with N-terminal receiver; E=7e-62 ygeV_3; COG1221 NtrC family transcriptional regulators, ATPase; E=3e-61 TP0519; COG2204 AAA superfamily ATPases with N-terminal receiver; E=8e-60 PFAM: PF00498; FHA domain; E=1.4e-16 PF00158; Sigma-54 interaction domain; E=1.6e-129 PF02001; Protein of unknown function DUF134; E=0.73 NP_868522.1 best DB hits: BLAST: ddbj:BAB06229.1; (AP001515) flavoprotein [Bacillus halodurans]; E=2e-26 swissprot:P44953; DFP_HAEIN DNAPANTOTHENATE METABOLISM; E=2e-26 pir:B82982; DNApantothenate metabolism flavoprotein PA5320; E=5e-25 COG: BH2510; COG0452 Flavoprotein involved in pantothenate metabolism; E=2e-27 NP_868523.1 PMID: 1709162 PMID: 10545205 best DB hits: BLAST: ddbj:BAB06253.1; (AP001515) dihydroorotate dehydrogenase; E=6e-68 swissprot:P25996; PYRD_BACSU DIHYDROOROTATE DEHYDROGENASE,; E=3e-67 swissprot:P46539; PYRD_BACCL DIHYDROOROTATE DEHYDROGENASE,; E=2e-65 COG: BH2534; COG0167 Dihydroorotate dehydrogenase; E=6e-69 PFAM: PF00977; Histidine biosynthesis protein; E=0.004 PF01180; Dihydroorotate dehydrogenase; E=4.3e-82 NP_868527.1 PMID: 99232513 best DB hits: BLAST: gb:AAD30861.1; AF116251_4 (AF116251) BatD [Bacteroides fragilis]; E=2e-10 gb:AAD30862.1; AF116251_5 (AF116251) BatE [Bacteroides fragilis]; E=4e-04 embl:CAA76834.1; (Y17720) SPINDLY protein [Petunia x hybrida]; E=0.59 PFAM: PF00515; TPR Domain; E=4e-07 NP_868528.1 PMID: 99232513 best DB hits: BLAST: gb:AAD30859.1; AF116251_2 (AF116251) BatB [Bacteroides fragilis]; E=5e-25 gb:AAD30858.1; AF116251_1 (AF116251) BatA [Bacteroides fragilis]; E=8e-15 pir:E70121; hypothetical protein BB0173 - Lyme disease spirochete; E=1e-09 COG: BB0173; COG3035 Uncharacterized BCR; E=1e-10 yfbK; COG2304 Protein containing von Willebrand factor (vWF) type A; E=0.003 APE0605; COG3035 Uncharacterized BCR; E=0.006 PFAM: PF00092; von Willebrand factor type A domain; E=6e-05 NP_868529.1 PMID: 99232513 best DB hits: BLAST: gb:AAD30858.1; AF116251_1 (AF116251) BatA [Bacteroides fragilis]; E=3e-38 pir:E82493; conserved hypothetical protein VCA0172 [imported] -; E=8e-29 pir:B83262; hypothetical protein PA3073 [imported] - Pseudomonas; E=4e-23 COG: VCA0172; COG3035 Uncharacterized BCR; E=8e-30 PFAM: PF00092; von Willebrand factor type A do; E=0.00041 NP_868531.1 best DB hits: BLAST: pir:G70121; conserved hypothetical protein BB0175 - Lyme disease; E=7e-30 swissprot:P71761; YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480; E=7e-27 pir:H83261; hypothetical protein PA3071 [imported] - Pseudomonas; E=3e-26 COG: BB0175; COG1721 Uncharacterized ACR; E=7e-31 PFAM: PF01882; Protein of unknown function DUF58; E=4.2e-38 NP_868532.1 best DB hits: BLAST: pir:G83261; conserved hypothetical protein PA3070 [imported] -; E=9e-66 pir:H82493; MoxR-related protein VCA0175 [imported] - Vibrio; E=2e-65 pir:B70874; probable moxR protein - Mycobacterium tuberculosis; E=4e-63 COG: PA3070; COG0714 MoxR-like ATPases; E=9e-67 PFAM: PF01078; Magnesium chelatase, subunit Chl; E=1e-06 NP_868533.1 best DB hits: BLAST: gb:AAG20870.1; (AE005155) Vng6208c [Halobacterium sp. NRC-1]; E=7e-05 pir:E75514; B-cell receptor associated protein-related protein -; E=0.016 COG: DR0482; COG0330 Membrane protease subunits, stomatin/prohibitin; E=0.002 NP_868534.1 best DB hits: BLAST: gb:AAG20870.1; (AE005155) Vng6208c [Halobacterium sp. NRC-1]; E=3e-04 pir:E75514; B-cell receptor associated protein-related protein -; E=8e-04 pir:S75156; hypothetical protein slr1768 - Synechocystis sp. (strain; E=8e-04 COG: DR0482; COG0330 Membrane protease subunits, stomatin/prohibitin; E=8e-05 NP_868538.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes NP_868539.1 PMID: 2504697 best DB hits: BLAST: pir:B83341; L-serine dehydratase PA2443 [imported] - Pseudomonas; E=1e-141 pir:D82974; L-serine dehydratase PA5379 [imported] - Pseudomonas; E=1e-127 swissprot:O86564; SDHL_STRCO L-SERINE DEHYDRATASE (L-SERINE; E=1e-126 COG: PA2443; COG1760 L-serine deaminase; E=1e-142 NP_868541.1 best DB hits: BLAST: embl:CAC14937.1; (AL449216) oxidoreductase [Streptomyces; E=8e-20 swissprot:P49305; YMO1_RHIME HYPOTHETICAL 36.4 KD PROTEIN IN; E=1e-12 ddbj:BAB04429.1; (AP001509) BH0710~unknown conserved protein; E=3e-11 COG: BH0710; COG0673 Predicted dehydrogenases and related proteins; E=3e-12 PFAM: PF01408; Oxidoreductase, NAD-bindi; E=2.3e-26 NP_868542.1 best DB hits: BLAST: pir:T48821; hypothetical protein 68B2.50 [imported] - Neurospora; E=7e-21 pir:T37061; probable secreted protein - Streptomyces coelicolor; E=1e-05 pir:S71925; angel protein - fruit fly (Drosophila melanogaster); E=0.001 NP_868543.1 best DB hits: BLAST: pir:H72393; hypothetical protein TM0307 - Thermotoga maritima; E=3e-12 COG: TM0307; COG2407 L-fucose isomerase and related proteins; E=3e-13 NP_868544.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate NP_868545.1 best DB hits: BLAST: pir:T35497; hypothetical protein SC6E10.10 - Streptomyces coelicolor; E=0.14 gb:AAG54838.1; AE005229_1 (AE005229) RTX family exoprotein; E=0.87 NP_868546.1 best DB hits: BLAST: swissprot:P31455; YIDR_ECOLI HYPOTHETICAL 46.4 KD PROTEIN IN; E=5e-86 gb:AAA62041.1; (L10328) f416 [Escherichia coli]; E=3e-85 gb:AAG58891.1; AE005600_9 (AE005600) orf, hypothetical protein; E=3e-85 COG: RP302; COG0823 Periplasmic component of the Tol biopolymer transport; E=0.004 PFAM: PF02039; Adrenomedullin; E=0.72 NP_868547.1 best DB hits: BLAST: pir:T36491; probable gntR-family transcriptional regulator -; E=1e-12 pir:T34672; probable gntR family transcriptional regulator -; E=2e-10 pir:B83545; probable transcriptional regulator PA0797 [imported] -; E=3e-10 COG: PA0797; COG1802 Transcriptional regulators; E=3e-11 DR1905; COG2186 Transcriptional regulators; E=2e-07 VC1335; COG1802 Transcriptional regulators; E=2e-07 PFAM: PF00392; Bacterial regulatory proteins, gntR; E=3.7e-09 NP_868548.1 PMID: 9329364 best DB hits: BLAST: pir:S75887; hypothetical protein - Synechocystis sp. (strain PCC; E=3e-31 embl:CAC16517.1; (AL450223) integral membrane transport; E=1e-27 gb:AAF57192.1; (AE003779) CG2187 gene product [Drosophila; E=6e-27 COG: sll1087; COG0591 Na+/proline, Na+/panthothenate symporters and; E=3e-32 yidK; COG0591 Na+/proline, Na+/panthothenate symporters and related; E=3e-06 PAB0609; COG0591 Na+/proline, Na+/panthothenate symporters and; E=1e-04 PFAM: PF00474; Sodium:solute symporter family; E=1.5e-11 NP_868549.1 PMID: 8098035 best DB hits: BLAST: gb:AAG18989.1; (AE004999) dihydrodipicolinate synthase; DapA; E=2e-23 swissprot:P75682; YAGE_ECOLI HYPOTHETICAL 33.3 KD PROTEIN IN; E=6e-19 pir:S56523; dihydrodipicolinate synthase homolog yjhH - Escherichia; E=1e-18 COG: VNG0444G; COG0329 Dihydrodipicolinate synthetase/N-acetylneuraminate; E=2e-24 PFAM: PF00701; Dihydrodipicolinate synthetase famil; E=1.6e-46 NP_868550.1 best DB hits: BLAST: ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=6e-11 ddbj:BAB05884.1; (AP001514) BH2165~unknown conserved protein; E=7e-11 pir:T34927; probable oxidoreductase - Streptomyces coelicolor; E=8e-11 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=6e-12 PFAM: PF01408; Oxidoreductase, NAD-bin; E=9.9e-20 NP_868552.1 best DB hits: BLAST: embl:CAC12079.1; (AL445066) conserved hypothetical protein; E=2e-11 swissprot:Q58668; YC72_METJA HYPOTHETICAL PROTEIN MJ1272 -----; E=1e-10 swissprot:O27296; YC28_METTH HYPOTHETICAL PROTEIN MTH1228 -----; E=2e-10 COG: Ta0950; COG0720 6-pyruvoyl-tetrahydropterin synthase; E=1e-12 PFAM: PF01242; 6-pyruvoyl tetrahydropterin synthas; E=0.0016 PF01945; Domain of unknown function; E=0.87 NP_868553.1 best DB hits: BLAST: ddbj:BAB05084.1; (AP001511) BH1365~unknown conserved protein in; E=1e-17 pir:G81831; probable integral membrane protein NMA2020 [imported] -; E=1e-16 pir:F81195; conserved hypothetical protein NMB0465 [imported] -; E=1e-16 COG: BH1365; COG2928 Uncharacterized BCR; E=1e-18 NP_868554.1 best DB hits: BLAST: pir:D83584; probable phosphoribosyl transferase PA0489 [imported] -; E=1e-05 gb:AAD29646.1; AF124757_6 (AF124757) competence protein F; E=2e-05 pir:H82042; ComF-related protein VC2719 [imported] - Vibrio cholerae; E=0.50 COG: PA0489; COG1040 Predicted amidophosphoribosyltransferases; E=1e-06 PFAM: PF00156; Phosphoribosyl transferase domai; E=0.00076 NP_868558.1 PMID: 8432708 PMID: 7961421 best DB hits: BLAST: swissprot:Q45585; SIGW_BACSU RNA POLYMERASE SIGMA FACTOR SIGW; E=1e-15 ddbj:BAB03982.1; (AP001507) RNA polymerase ECF-type sigma factor; E=5e-13 gb:AAF18265.1; U22895_1 (U22895) alternative sigma factor AlgU; E=3e-10 COG: BS_sigW; COG1595 DNA-directed RNA polymerase specialized sigma; E=1e-16 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=2.9e-11 NP_868561.1 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=5e-05 swissprot:P39663; SPHR_SYNP7 ALKALINE PHOSPHATASE SYNTHESIS; E=8e-05 ddbj:BAB09274.1; (AB011485) histidine kinase-like protein; E=1e-04 COG: slr2104_4; COG0784 CheY-like receiver domains; E=4e-06 VC0719; COG0745 Response regulators consisting of a CheY-like; E=2e-05 slr1042; COG0784 CheY-like receiver domains; E=5e-05 PFAM: PF02599; Carbon storage regulator; E=0.2 PF00072; Response regulator receiver d; E=1.7e-10 NP_868563.1 PMID: 3139632 PMID: 7664125 best DB hits: BLAST: swissprot:Q10614; YC88_MYCTU HYPOTHETICAL 49.6 KDA PROTEIN RV1288; E=2e-08 pir:S58235; endo-1,4-beta-xylanase (EC 3.2.1.8) 1 precursor -; E=2e-07 embl:CAB93667.1; (AJ272430) endoxylanase [Ruminococcus; E=4e-07 COG: yieL; COG2382 Enterochelin esterase and related enzymes; E=0.001 NP_868564.1 PMID: 9000374 best DB hits: BLAST: swissprot:P78594; FCA1_CANAL CYTOSINE DEAMINASE (CYTOSINE; E=9e-32 gb:AAC13409.1; (U55193) cytosine deaminase [Saccharomyces; E=8e-30 gb:AAG33626.1; AF312392_1 (AF312392) cytosine deaminase-uracil; E=8e-30 COG: YPR062w; COG0590 Cytosine/adenosine deaminases; E=8e-31 PFAM: PF00383; Cytidine and deoxycytidylate de; E=6.1e-24 NP_868565.1 PMID: 8445726 best DB hits: BLAST: ddbj:BAA92557.1; (AB037740) KIAA1319 protein [Homo sapiens]; E=0.030 gb:AAF74498.1; AF263462_1 (AF263462) cingulin [Homo sapiens]; E=0.030 embl:CAC14945.1; (AL132825) dJ756N5.1 (Myosin heavy chain protein; E=0.047 NP_868566.1 best DB hits: BLAST: pir:H69086; ABC transporter - Methanobacterium thermoautotrophicum; E=3e-56 swissprot:Q46189; YHG1_CLOPA HYPOTHETICAL PROTEIN IN HYDROGENASE 1; E=3e-52 ddbj:BAB06427.1; (AP001516) ABC transporter [Bacillus halodurans]; E=3e-51 COG: MTH1645; COG0661 Predicted unusual protein kinase; E=3e-57 NP_868567.1 PMID: 8590279 best DB hits: BLAST: swissprot:P55660; Y4TF_RHISN PROBABLE AMINO-ACID ABC TRANSPORTER; E=0.095 NP_868568.1 best DB hits: BLAST: embl:CAA86969.1; (Z46881) unknown [Saccharomyces cerevisiae]; E=0.22 PFAM: PF02535; ZIP Zinc transporter; E=0.23 NP_868569.1 PMID: 2678100 best DB hits: BLAST: pir:G72363; cation efflux system protein - Thermotoga maritima; E=4e-37 pir:H71078; probable cation efflux system protein czcD - Pyrococcus; E=4e-37 pir:C83595; probable cation efflux system protein PA0397 [imported]; E=9e-37 COG: TM0538; COG1230 Co/Zn/Cd efflux system component; E=4e-38 Rv2025c; COG0053 Predicted Co/Zn/Cd cation transporters; E=2e-10 PA1297; COG1230 Co/Zn/Cd efflux system component; E=4e-10 PFAM: PF01545; Cation efflux family; E=1.7e-65 NP_868570.1 best DB hits: BLAST: embl:CAB99170.1; (AL390188) secreted alkaline; E=0.003 embl:CAC18240.1; (AL451018) conserved hypothetical protein; E=0.004 ddbj:BAA06483.1; (D30808) unknown [Bacillus subtilis]; E=0.10 PFAM: PF02908; Purple acid phosphatase, N-term; E=0.89 PF00041; Fibronectin type III domain; E=0.42 NP_868571.1 best DB hits: BLAST: pir:T09933; nucleotide pyrophosphatase homolog T16L4.210 -; E=5e-04 pir:T33724; hypothetical protein - Zymomonas mobilis ----- gb:; E=0.001 pir:B82537; phosphodiesterase-nucleotide pyrophosphatase precursor; E=0.019 PFAM: PF01676; Metalloenzyme superfamily; E=0.0082 NP_868572.1 PMID: 9395090 best DB hits: BLAST: pir:G72240; hypothetical protein TM1564 - Thermotoga maritima; E=3e-04 embl:CAA58988.1; (X84195) acylphosphatase [Homo sapiens]; E=9e-04 swissprot:P00818; ACYM_HORSE ACYLPHOSPHATASE, MUSCLE TYPE; E=0.001 COG: TM1564; COG1254 Acylphosphatases; E=3e-05 PFAM: PF00708; Acylphosphatase; E=0.02 NP_868573.1 PMID: 2987847 best DB hits: BLAST: swissprot:P05653; GYRA_BACSU DNA GYRASE SUBUNIT A ----- pir:; E=0.0 swissprot:P48372; GYRA_PSEAE DNA GYRASE SUBUNIT A ----- pir:; E=0.0 gb:AAC34892.1; (AF085683) DNA gyrase A subunit [Methylovorus sp.; E=0.0 COG: BS_gyrA; COG0188 DNA gyrase (topoisomerase II) A subunit; E=0.0 PFAM: PF00521; DNA gyrase/topoisomerase IV, su; E=1.3e-246 NP_868574.1 best DB hits: BLAST: embl:CAA72104.1; (Y11218) stage V sporulation protein K [Bacillus; E=1e-49 swissprot:O69733; Y2G8_MYCTU HYPOTHETICAL 62.4 KDA PROTEIN RV3868; E=1e-49 embl:CAB96009.1; (AL360055) hypothetical protein [Streptomyces; E=2e-49 COG: Rv3868; COG0464 ATPases of the AAA+ class; E=1e-50 slr0156; COG0542 ATPases with chaperone activity, ATP-binding domain; E=7e-05 AF0477; COG0464 ATPases of the AAA+ class; E=0.006 PFAM: PF00004; ATPase associated with va; E=8.9e-22 NP_868576.1 best DB hits: BLAST: gb:AAK03770.1; (AE006205) UbiE [Pasteurella multocida]; E=0.011 embl:CAB86120.1; (AL163003) spermidine synthase; E=0.050 pir:G83392; hypothetical protein PA2034 [imported] - Pseudomonas; E=0.098 NP_868578.1 PMID: 8550403 best DB hits: BLAST: embl:CAC24092.1; (AL512982) hypothetical [Sulfolobus; E=1e-48 embl:CAB55723.1; (AL117387) hypothetical protein SCF41.20c; E=3e-18 pir:T45421; probable 2-hydroxyhepta-2,4-diene-1,7- dioate isomaerase; E=1e-10 COG: Rv2993c; COG0179 2-keto-4-pentenoate; E=2e-11 PFAM: PF01557; Fumarylacetoacetate (FAA) hydro; E=0.0074 NP_868579.1 PMID: 8108524 best DB hits: BLAST: pir:C75587; probable chalcone synthase - Deinococcus radiodurans; E=5e-46 pir:A75315; probable chalcone synthase - Deinococcus radiodurans; E=3e-35 gb:AAD43969.1; AF121274_1 (AF121274) chalcone synthase; E=1e-33 COG: DRA0326; COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III; E=5e-47 PFAM: PF00195; Chalcone and stilbene synthas; E=1.3e-28 PF02797; Chalcone and stilbene synthas; E=2.9e-25 NP_868580.1 best DB hits: BLAST: pir:D70549; hypothetical protein Rv0561c - Mycobacterium; E=0.12 PFAM: PF02737; 3-hydroxyacyl-CoA dehydrogenase; E=0.26 PF01494; FAD binding domain; E=0.039 PF00070; Pyridine nucleotide-disulphide; E=2.9e-09 NP_868581.1 best DB hits: BLAST: pir:D75587; hypothetical protein - Deinococcus radiodurans (strain; E=5e-04 pir:F75277; ubiquinonemenaquinone biosynthesis methyltransferase -; E=0.11 COG: DRA0327; COG0500 SAM-dependent methyltransferases; E=5e-05 NP_868582.1 Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthes NP_868583.1 PMID: 7896715 best DB hits: BLAST: swissprot:P72846; LGT_SYNY3 PROBABLE PROLIPOPROTEIN DIACYLGLYCERYL; E=4e-07 pir:G70324; prolipoprotein diacylglyceryl transferase - Aquifex; E=3e-06 pir:D75473; prolipoprotein diacylglyceryl transferase - Deinococcus; E=8e-06 COG: sll1187; COG0682 Prolipoprotein diacylglyceryltransferase; E=4e-08 PFAM: PF01790; Prolipoprotein diacylglyceryl transf; E=7e-23 NP_868587.1 best DB hits: BLAST: pir:T44513; hypothetical protein 5P [imported] - Plesiomonas; E=3e-21 gb:AAG17422.1; AF285971_6 (AF285971) WbgV [Shigella sonnei]; E=4e-21 gb:AAA84874.1; (U34305) ORF6; Method: conceptual translation; E=4e-14 NP_868588.1 best DB hits: BLAST: swissprot:Q9RVM9; MRP_DEIRA MRP PROTEIN HOMOLOG ----- pir:; E=1e-60 pir:B82576; polysaccharide export protein XF2301 [imported] -; E=3e-56 pir:A64114; probable ATPase mrp - Haemophilus influenzae (strain Rd; E=2e-53 COG: XF2301; COG0489 ATPases involved in chromosome partitioning; E=3e-57 PFAM: PF02374; Anion-transporting ATPase; E=0.097 PF01209; ubiE/COQ5 methyltransferase f; E=0.6 PF00991; ParA family ATPase; E=0.041 NP_868589.1 PMID: 8759840 best DB hits: BLAST: pir:H75014; 3-oxoacyl-[acyl-carrier-protein] reductase PAB1085 -; E=6e-34 swissprot:P16543; DHK2_STRVN GRANATICIN POLYKETIDE SYNTHASE; E=9e-33 gb:AAC44307.1; (U59433) 3-ketoacyl-acyl carrier protein reductase; E=2e-30 COG: PAB1085; COG1028 Dehydrogenases with different specificities; E=6e-35 BH2491; COG1028 Dehydrogenases with different specificities (related; E=3e-31 BS_fabG; COG1028 Dehydrogenases with different specificities; E=3e-31 PFAM: PF00106; short chain dehydrogenase; E=1.1e-62 NP_868590.1 PMID: 8436953 best DB hits: BLAST: swissprot:Q9X1E3; GLPF_THEMA PROBABLE GLYCEROL UPTAKE FACILITATOR; E=3e-37 swissprot:P18156; GLPF_BACSU GLYCEROL UPTAKE FACILITATOR PROTEIN; E=4e-33 ddbj:BAB04811.1; (AP001510) glycerol uptake facilitator [Bacillus; E=5e-33 COG: TM1429; COG0580 Glycerol uptake facilitator and related permeases; E=3e-38 PFAM: PF00230; Major intrinsic protein; E=6.1e-57 NP_868591.1 PMID: 7984107 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=2e-56 pir:S75525; sensory transduction histidine kinase sll1228 -; E=4e-50 pir:E82198; sensor histidine kinaseresponse regulator VC1445; E=5e-46 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=2e-43 PFAM: PF00785; PAC motif; E=0.00017 PF00512; His Kinase A (phosphoacceptor; E=1.1e-25 PF02518; Histidine kinase-, DNA gyrase; E=8.9e-44 NP_868594.1 best DB hits: BLAST: gb:AAK05448.1; AE006367_4 (AE006367) HYPOTHETICAL PROTEIN; E=3e-10 pir:C69789; hypothetical protein ydjG - Bacillus subtilis -----; E=3e-09 ddbj:BAB05525.1; (AP001513) BH1806~unknown conserved protein; E=5e-09 NP_868595.1 best DB hits: BLAST: pir:C69789; hypothetical protein ydjG - Bacillus subtilis -----; E=2e-07 embl:CAA76859.1; (Y17797) hypothetical protein [Enterococcus; E=2e-07 gb:AAK05448.1; AE006367_4 (AE006367) HYPOTHETICAL PROTEIN; E=8e-04 NP_868597.1 PMID: 1906968 best DB hits: BLAST: pir:S22102; fimbrial protein MS11-C3MS11-G2 precursor - Neisseria; E=0.57 pir:S22103; fimbrial protein MS11-E1MS11-F3 precursor - Neisseria; E=0.57 pir:S22104; fimbrial protein MS11-E3 precursor - Neisseria; E=0.57 PFAM: PF00114; Pilin (bacterial filament); E=0.42 NP_868599.1 best DB hits: BLAST: pir:T34690; hypothetical protein SC1B5.12c SC1B5.12c - Streptomyces; E=2e-63 ddbj:BAB07623.1; (AP001520) BH3904~unknown conserved protein in; E=7e-54 pir:T36920; hypothetical protein SCI7.24c - Streptomyces coelicolor; E=4e-48 COG: BH3904; COG3211 Predicted phosphatase; E=7e-55 NP_868602.1 PMID: 8760916 PMID: 25878 best DB hits: BLAST: swissprot:P42251; PPBD_BACSU ALKALINE PHOSPHATASE D PRECURSOR; E=1e-124 ddbj:BAA06483.1; (D30808) unknown [Bacillus subtilis]; E=1e-110 pir:T50595; probable alkaline phosphatase [imported] - Streptomyces; E=1e-103 NP_868605.1 best DB hits: BLAST: pir:A83363; probable cytochrome c precursor PA2266 [imported] -; E=6e-09 pir:B81167; cytochrome c552 NMB0717 precursor [similarity] - Neisseria; E=7e-09 pir:F83631; cytochrome c oxidase, subunit II PA0105 [imported] -; E=2e-08 COG: PA2266; COG2010 Cytochrome c, mono- and diheme variants; E=6e-10 NP_868606.1 PMID: 8093075 best DB hits: BLAST: ddbj:BAA05853.1; (D28493) neuraminidase precursor [Bacteroides; E=4e-90 pir:JC2500; exo-alpha-sialidase (EC 3.2.1.18) precursor -; E=8e-89 swissprot:P31206; NANH_BACFR SIALIDASE (NEURAMINIDASE) -----; E=2e-68 PFAM: PF02012; BNR repeat; E=0.038 NP_868607.1 best DB hits: BLAST: pir:E82335; hypothetical protein VC0334 [imported] - Vibrio cholerae; E=3e-58 PFAM: PF02272; DHHA1 domain; E=0.84 NP_868609.1 best DB hits: BLAST: pir:S75223; hypothetical protein sll1835 - Synechocystis sp. (strain; E=0.16 NP_868612.1 PMID: 8541300 PMID: 9004408 best DB hits: BLAST: gb:AAB48319.1; (U29691) CDP-tyvelose epimerase [Yersinia; E=5e-14 pir:B33604; rfbE protein - Salmonella sp; E=1e-11 swissprot:P14169; RFBE_SALTI CDP-TYVELOSE-2-EPIMERASE -----; E=1e-11 COG: PAB1299; COG0451 Nucleoside-diphosphate-sugar epimerases; E=3e-09 PAB0785; COG1088 dTDP-D-glucose 4,6-dehydratase; E=7e-08 PH1742; COG0451 Nucleoside-diphosphate-sugar epimerases; E=2e-07 PFAM: PF01370; NAD dependent epimerase/dehydratase; E=2.5e-05 NP_868613.1 best DB hits: BLAST: embl:CAC15463.1; (AJ294477) polyprenol phosphate; E=6e-18 pir:B70945; hypothetical protein Rv2051c - Mycobacterium; E=2e-16 embl:CAB11300.1; (Z98604) hypothetical protein MLCB2052.02; E=2e-14 COG: Rv2051c_2; COG0463 Glycosyltransferases involved in cell wall; E=6e-17 PFAM: PF00535; Glycosyl transferase; E=4.6e-17 NP_868615.1 best DB hits: BLAST: ddbj:BAB05126.1; (AP001511) BH1407~unknown conserved protein; E=2e-60 pir:H71283; conserved hypothetical integral membrane protein TP0771; E=1e-47 embl:CAC27413.1; (AJ307315) membrane protein; E=4e-47 COG: BH1407; COG1283 Na+/phosphate symporter; E=2e-61 PFAM: PF02690; Na+/Pi-cotransporter; E=1.4e-26 NP_868617.1 PMID: 96003619 PMID: 97309356 best DB hits: BLAST: pdb:1DL3; A Chain A, Crystal Structure Of Mutually Generated; E=2e-19 swissprot:Q56320; TRPF_THEMA N-(5'-PHOSPHORIBOSYL)ANTHRANILATE; E=5e-19 pir:E81935; probable phosphoribosylanthranilate isomerase (EC; E=6e-18 COG: TM0139; COG0135 Phosphoribosylanthranilate isomerase; E=5e-20 PFAM: PF00697; N-(5'phosphoribosyl)anthranilate (PR; E=7.3e-41 NP_868620.1 PMID: 1317842 best DB hits: BLAST: ddbj:BAB17162.1; (AP002868) leucyl-tRNA synthetase; E=0.0 embl:CAB77903.1; (AL161500) leucyl tRNA synthetase; E=0.0 gb:AAK04914.1; AE006315_3 (AE006315) leucyl-tRNA synthetase (EC; E=0.0 COG: TP0586; COG0495 Leucyl-tRNA synthetase; E=0.0 PFAM: PF00133; tRNA synthetases class I (I, L; E=1.4e-39 NP_868621.1 best DB hits: BLAST: embl:CAB69781.1; (AL137187) membrane protein; E=2e-18 pir:T36253; probable membrane protein - Streptomyces coelicolor; E=1e-16 pir:T21781; hypothetical protein F35E2.6 - Caenorhabditis elegans; E=4e-06 COG: BS_yrhL; COG1835 Predicted acyltransferases; E=1e-05 NP_868623.2 catalyzes the interconversion of 3-phosphoglycerate and 2-phosphoglycerate; this enzyme does not require the cofactor 2,3-bisphosphoglycerate as a phosphate donor; BPG-independent PGAM; aPGAM NP_868624.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP NP_868625.1 PMID: 21429239 best DB hits: BLAST: embl:CAC28871.1; (AJ278984) PbrT protein [Ralstonia; E=2e-05 pir:B82990; hypothetical protein PA5248 [imported] - Pseudomonas; E=0.15 PFAM: PF00034; Cytochrome c; E=0.04 NP_868626.1 best DB hits: BLAST: pir:S74905; hypothetical protein slr2060 - Synechocystis sp. (strain; E=4e-10 ddbj:BAB05354.1; (AP001512) BH1635~unknown conserved protein; E=0.004 gb:AAF73599.1; (AE002342) 1-acyl-sn-glycerol-3-phosphate; E=0.004 COG: BH1635; COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; E=4e-04 PFAM: PF01553; Acyltransferase; E=2.7e-09 NP_868627.1 PMID: 1835671 best DB hits: BLAST: pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=3e-44 pir:T36717; probable serinethreonine protein kinase - Streptomyces; E=2e-42 swissprot:P54744; PKNB_MYCLE SERINETHREONINE-PROTEIN; E=7e-42 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=3e-45 PFAM: PF01740; STAS domain; E=0.19 PF00069; Protein kinase domain; E=7.3e-58 NP_868629.1 best DB hits: BLAST: ddbj:BAA84086.1; (AB032065) hypothetical protein [Streptomyces; E=3e-15 embl:CAB61872.1; (AL133252) hypothetical protein SCE46.21; E=7e-14 gb:AAC15821.1; (U44977) unknown [Prochlorococcus marinus]; E=7e-13 COG: sll1095; COG3222 Uncharacterized BCR; E=5e-08 NP_868630.1 PMID: 8682785 best DB hits: BLAST: swissprot:P33642; Y9E8_PSEAE PROBABLE D-AMINO ACID OXIDASE PA4548; E=5e-27 ddbj:BAB05760.1; (AP001514) BH2041~unknown conserved protein; E=6e-26 gb:AAB39269.1; (L48934) homolgous to D-amino acid dehydrogenase; E=1e-25 COG: PA4548; COG0665 Glycine/D-amino acid oxidases (deaminating); E=5e-28 PFAM: PF01494; FAD binding domain; E=0.022 PF02254; KTN NAD-binding domain; E=0.00026 PF00070; Pyridine nucleotide-disulphide; E=0.00011 NP_868631.1 best DB hits: BLAST: pir:B82434; probable NADH oxidase VCA0644 [imported] - Vibrio; E=1e-102 gb:AAK04884.1; AE006312_4 (AE006312) NADH oxidase [Lactococcus; E=3e-99 gb:AAB90837.1; (AE001077) NADH oxidase (noxA-3) [Archaeoglobus; E=2e-75 COG: VCA0644_1; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; E=5e-87 BH0613; COG1251 NAD(P)H-nitrite reductase; E=1e-18 PFAM: PF01266; D-amino acid oxidase; E=0.47 PF02032; Phytoene dehydrogenase related; E=0.14 PF00070; Pyridine nucleotide-disulphide; E=8.8e-72 NP_868632.1 PMID: 8231807 PMID: 9457888 best DB hits: BLAST: pir:B70850; probable transcriptional regulator Rv0081 - Mycobacterium; E=7e-07 pir:D82766; transcriptional regulator ArsR family XF0767 [imported] -; E=1e-06 pir:E70585; probable transcriptional regulator Rv2358 - Mycobacterium; E=4e-06 COG: Rv0081; COG0640 Predicted transcriptional regulators; E=7e-08 PFAM: PF01022; Bacterial regulatory protein, arsR f; E=1.8e-18 NP_868633.1 PMID: 96118391 PMID: 20363527 best DB hits: BLAST: pir:S27619; ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.-) -; E=2e-65 pir:S27612; ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.-) -; E=6e-61 pdb:1EYY; A Chain A, Crystal Structure Of The Nadp+ Dependent; E=5e-54 COG: PA2217; COG1012 NAD-dependent aldehyde dehydrogenases; E=4e-54 PFAM: PF00171; Aldehyde dehydrogenase; E=3.5e-08 NP_868636.1 best DB hits: PFAM: PF02058; Guanylin precursor; E=0.81 NP_868641.1 PMID: 8097179 best DB hits: BLAST: swissprot:O67943; CH60_AQUAE 60 KDA CHAPERONIN (PROTEIN CPN60); E=1e-160 swissprot:P35471; CH63_RHIME 60 KDA CHAPERONIN C (PROTEIN CPN60 C); E=1e-159 swissprot:P45746; CH60_THETH 60 KDA CHAPERONIN (PROTEIN CPN60); E=1e-159 COG: aq_2200; COG0459 Chaperonin GroEL (HSP60 family); E=1e-161 PFAM: PF00118; TCP-1/cpn60 chaperonin family; E=3.3e-207 NP_868642.1 PMID: 7913076 PMID: 9387235 best DB hits: BLAST: swissprot:P40172; CH10_STRCO 10 KDA CHAPERONIN (PROTEIN CPN10); E=1e-23 swissprot:P26195; CH10_LEGMI 10 KD CHAPERONIN (PROTEIN CPN10); E=5e-22 swissprot:Q07200; CH10_BACST 10 KD CHAPERONIN (PROTEIN CPN10); E=6e-22 COG: BS_groES; COG0234 Co-chaperonin GroES (HSP10); E=1e-22 PFAM: PF00166; Chaperonin 10 Kd subunit; E=5.4e-52 NP_868643.1 PMID: 8097179 best DB hits: BLAST: swissprot:P35471; CH63_RHIME 60 KDA CHAPERONIN C (PROTEIN CPN60 C); E=1e-163 gb:AAF64160.1; AF239163_2 (AF239163) GroEL [Rhizobium; E=1e-163 swissprot:P77829; CH61_BRAJA 60 KD CHAPERONIN 1 (PROTEIN CPN60 1); E=1e-162 COG: TM0506; COG0459 Chaperonin GroEL (HSP60 family); E=1e-163 PFAM: PF00118; TCP-1/cpn60 chaperonin family; E=4.9e-226 NP_868644.1 PMID: 9061015 best DB hits: BLAST: pir:A83052; DnaJ protein PA4760 [imported] - Pseudomonas aeruginosa; E=6e-83 swissprot:Q9ZFC5; DNAJ_METSS CHAPERONE PROTEIN DNAJ ----- gb:; E=3e-81 gb:AAG54315.1; AE005178_5 (AE005178) chaperone with DnaK; heat; E=1e-80 COG: PA4760; COG0484 Molecular chaperones (contain C-terminal Zn finger; E=5e-84 PFAM: PF00226; DnaJ domain; E=2.8e-32 PF00684; DnaJ central domain (4 repeats); E=1.3e-22 PF01556; DnaJ C terminal region; E=7e-58 NP_868645.1 PMID: 10024539 PMID: 2108432 PMID: 1339421 best DB hits: BLAST: swissprot:Q9ZCT4; GRPE_RICPR GRPE PROTEIN (HSP-70 COFACTOR); E=3e-19 swissprot:P95333; GRPS_MYXXA GRPS PROTEIN ----- gb: AAC64204.1; E=2e-18 gb:AAC72386.1; (AF098635) chaperone GrpE type 1 [Nicotiana; E=3e-18 COG: RP629; COG0576 Molecular chaperone GrpE (heat shock protein); E=3e-20 PFAM: PF01025; GrpE; E=1e-49 NP_868647.1 best DB hits: BLAST: pir:F72411; conserved hypothetical protein - Thermotoga maritima; E=3e-08 embl:CAB90971.1; (AL355832) hypothetical protein SCE22.04; E=6e-07 pir:B70601; hypothetical protein Rv0991c - Mycobacterium; E=2e-06 COG: TM0144; COG2331 Uncharacterized BCR; E=3e-09 NP_868648.1 best DB hits: BLAST: pir:E83520; conserved hypothetical protein PA1012 [imported] -; E=4e-34 embl:CAB65404.1; (AJ012052) YycJ protein [Staphylococcus aureus]; E=3e-28 embl:CAB64977.1; (AJ012050) YycJ protein [Enterococcus faecalis]; E=2e-27 COG: PA1012; COG1235 Metal-dependent hydrolases of the beta-lactamase; E=4e-35 PAB0518; COG1237 Metal-dependent hydrolases of the beta-lactamase; E=0.005 BS_yqgX; COG0491 Zn-dependent hydrolases, including glyoxylases; E=0.007 PFAM: PF00753; Metallo-beta-lactamase superfamil; E=6.5e-14 NP_868649.1 PMID: 2504697 PMID: 8436113 best DB hits: BLAST: swissprot:O34607; SDHA_BACSU PROBABLE L-SERINE DEHYDRATASE, ALPHA; E=1e-26 ddbj:BAB06215.1; (AP001515) L-serine dehydratase alpha subunit; E=9e-26 gb:AAK04929.1; AE006316_10 (AE006316) alpha-subuni L-serine; E=5e-25 COG: BS_ylpA; COG1760 L-serine deaminase; E=1e-27 NP_868651.1 best DB hits: BLAST: pir:G71146; hypothetical protein PH0385 - Pyrococcus horikoshii; E=3e-58 pir:C83106; conserved hypothetical protein PA4322 [imported] -; E=2e-56 pir:D75008; methanol dehydrogenase regulatory protein (moxr-2); E=3e-56 COG: PH0385; COG0714 MoxR-like ATPases; E=2e-59 PFAM: PF00004; ATPase associated with v; E=0.23 PF01078; Magnesium chelatase, subunit Ch; E=1.9e-12 NP_868652.1 best DB hits: BLAST: pir:A81035; conserved hypothetical protein NMB1852 [imported] -; E=2e-18 gb:AAC78448.1; (AF029361) similar to E. coli ORF, encoded by; E=7e-18 gb:AAC78450.1; (AF029362) similar to E. coli ORF, encoded by; E=2e-17 COG: NMB1852; COG2852 Uncharacterized BCR; E=2e-19 NP_868654.1 best DB hits: BLAST: pir:G70121; conserved hypothetical protein BB0175 - Lyme disease; E=2e-13 swissprot:P71761; YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480; E=1e-12 pir:D83106; hypothetical protein PA4323 [imported] - Pseudomonas; E=2e-11 COG: BB0175; COG1721 Uncharacterized ACR; E=2e-14 PFAM: PF01882; Protein of unknown function DUF; E=6.5e-23 NP_868656.1 PMID: 11214968 NP_868661.1 PMID: 92104976 best DB hits: BLAST: pir:A43300; squalene-hopene cyclase (EC 5.4.99.-) - Alicyclobacillus; E=0.089 NP_868662.1 best DB hits: BLAST: pir:F75549; cytochrome c biogenesis protein CycX homolog DR0189; E=1e-15 pir:E69891; cytochrome c biogenesis protein CycX homolog homolog yneN; E=9e-14 swissprot:P35160; RESA_BACSU RESA PROTEIN ----- pir: S45556; E=2e-13 COG: DR0189; COG0526 Thiol-disulfide isomerase and thioredoxins; E=1e-16 PFAM: PF00578; AhpC/TSA family; E=0.072 PF00085; Thioredoxin; E=9.1e-07 NP_868665.1 best DB hits: BLAST: pir:C82583; RNA polymerase sigma-H factor XF2239 [imported] -; E=0.001 embl:CAC01348.1; (AL390975) ECF-subfamily sigma factor; E=0.018 gb:AAC45221.1; (U87307) extracytoplasmic function alternative; E=0.030 COG: XF2239; COG1595 DNA-directed RNA polymerase specialized sigma; E=1e-04 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=0.016 PF00196; Bacterial regulatory proteins,; E=0.13 NP_868666.1 PMID: 7774814 best DB hits: BLAST: swissprot:P54744; PKNB_MYCLE SERINETHREONINE-PROTEIN; E=4e-41 ddbj:BAB06223.1; (AP001515) serinethreonine protein kinase; E=2e-38 pir:T36717; probable serinethreonine protein kinase - Streptomyces; E=4e-38 COG: BH2504_1; COG0515 Serine/threonine protein kinases; E=2e-39 PFAM: PF00069; Protein kinase domain; E=5.1e-52 NP_868671.1 best DB hits: BLAST: swissprot:O05389; YRBE_BACSU HYPOTHETICAL 37.8 KDA PROTEIN IN; E=2e-08 swissprot:P40332; YISS_BACSU HYPOTHETICAL 37.5 KD PROTEIN IN; E=1e-07 ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=1e-06 COG: BS_yrbE; COG0673 Predicted dehydrogenases and related proteins; E=2e-09 PFAM: PF01408; Oxidoreductase, NAD-bin; E=3.2e-25 NP_868672.1 PMID: 10571076 best DB hits: BLAST: embl:CAB08809.1; (Z95398) unknown [Mycobacterium leprae]; E=1e-152 pir:C70838; probable zinc metalloproteinase Rv0198c - Mycobacterium; E=1e-150 ddbj:BAA24495.1; (AB010440) PepO [Porphyromonas gingivalis]; E=1e-142 PFAM: PF01447; Thermolysin metallopeptidase, c; E=0.64 PF01431; Peptidase M13; E=1.3e-88 NP_868675.1 best DB hits: PFAM: PF00515; TPR Domain; E=0.008 NP_868676.1 best DB hits: BLAST: gb:AAF46853.2; (AE003457) CG4554 gene product [Drosophila; E=0.55 PFAM: PF00515; TPR Domain; E=0.5 NP_868682.1 best DB hits: BLAST: pir:F69009; probable membrane protein MTH1074 - Methanobacterium; E=1e-19 pir:T28679; fibrinogen-binding protein homolog - Staphylococcus aureus; E=0.008 pir:B75556; hypothetical protein - Deinococcus radiodurans (strain R1); E=0.059 PFAM: PF01345; Domain of unknown function DUF11; E=0.14 NP_868683.1 best DB hits: BLAST: gb:AAB91043.1; (AE001093) conserved hypothetical protein; E=0.84 NP_868684.1 best DB hits: BLAST: embl:CAB88963.1; (AL353864) DNA-binding protein.; E=0.38 NP_868686.1 best DB hits: BLAST: gb:AAG54838.1; AE005229_1 (AE005229) RTX family exoprotein; E=0.005 swissprot:Q99144; PEX5_YARLI PEROXISOMAL TARGETING SIGNAL RECEPTOR; E=0.056 pir:A72220; conserved hypothetical protein - Thermotoga maritima; E=0.084 COG: TM1695; COG0457 TPR-repeat-containing proteins; E=0.008 PFAM: PF00515; TPR Domain; E=0.28 PF01839; FG-GAP repeat; E=0.0027 NP_868689.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_868691.1 best DB hits: PFAM: PF00515; TPR Domain; E=0.83 NP_868693.1 best DB hits: BLAST: swissprot:P75790; YBIT_ECOLI HYPOTHETICAL ABC TRANSPORTER; E=1e-60 pir:D83399; probable ATP-binding component of ABC transporter PA1964; E=2e-60 swissprot:O05519; YDIF_BACSU HYPOTHETICAL ABC TRANSPORTER; E=2e-60 COG: ybiT; COG0488 ATPase components of ABC transporters with duplicated; E=1e-61 PA1964; COG0488 ATPase components of ABC transporters with; E=2e-61 yheS; COG0488 ATPase components of ABC transporters with duplicated; E=2e-52 PFAM: PF00005; ABC transporter; E=4.7e-40 PF00006; ATP synthase alpha/beta family; E=0.83 PF00005; ABC transporter; E=8.7e-34 NP_868694.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide NP_868696.1 best DB hits: BLAST: pir:F83600; conserved hypothetical protein PA0368 [imported] -; E=6e-21 gb:AAG24650.1; (AF193866) unknown [Alcanivorax borkumensis]; E=8e-17 pir:F81794; conserved hypothetical protein NMA2211 [imported] -; E=1e-16 COG: PA0368; COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold; E=5e-22 NMB0276; COG0429 Predicted hydrolase of the alpha/beta-hydrolase; E=3e-17 VC2610; COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold; E=7e-15 PFAM: PF00561; alpha/beta hydrolase fold; E=0.0028 NP_868697.1 best DB hits: BLAST: swissprot:O66967; Y768_AQUAE HYPOTHETICAL PROTEIN AQ_768 -----; E=1e-17 swissprot:O26683; Y583_METTH HYPOTHETICAL PROTEIN MTH583 -----; E=7e-17 swissprot:Q58963; YF68_METJA HYPOTHETICAL PROTEIN MJ1568 -----; E=1e-14 COG: aq_768; COG1514 2'-5' RNA ligase; E=1e-18 PFAM: PF02834; 2',5' RNA ligase; E=4.1e-11 NP_868698.1 PMID: 1885539 best DB hits: BLAST: ddbj:BAB04267.1; (AP001508) glycoprotein endopeptidase [Bacillus; E=3e-64 swissprot:O05518; GCP_BACSU PROBABLE O-SIALOGLYCOPROTEIN; E=4e-62 gb:AAK03322.1; (AE006163) Gcp [Pasteurella multocida]; E=1e-61 COG: BH0548; COG0533 Metal-dependent proteases with possible chaperone; E=3e-65 PFAM: PF00814; Glycoprotease; E=1.8e-113 NP_868699.1 PMID: 21595285 NP_868700.1 PMID: 9020051 best DB hits: BLAST: swissprot:P46016; 6PGL_ANASP 6-PHOSPHOGLUCONOLACTONASE (6PGL); E=5e-36 pir:S76814; hypothetical protein - Synechocystis sp. (strain PCC; E=8e-31 swissprot:P74618; 6PGL_SYNY3 6-PHOSPHOGLUCONOLACTONASE (6PGL); E=8e-31 COG: sll1479; COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate; E=8e-32 PFAM: PF00256; Ribosomal protein L15; E=0.018 NP_868701.1 PMID: 10223988 best DB hits: BLAST: pir:T50554; 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC; E=2e-47 swissprot:Q10505; PANB_MYCTU 3-METHYL-2-OXOBUTANOATE; E=1e-46 pir:T50565; 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC; E=1e-45 COG: Rv2225; COG0413 Ketopantoate hydroxymethyltransferase; E=1e-47 PFAM: PF02548; Ketopantoate hydroxymethyltra; E=3.6e-110 NP_868702.1 PMID: 8020961 PMID: 7744061 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=2e-35 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=5e-35 pir:S69336; arylsulfatase (EC 3.1.6.1) - Pseudomonas aeruginosa; E=6e-33 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=4e-33 PFAM: PF00884; Sulfatase; E=1.8e-50 NP_868703.1 PMID: 7499387 best DB hits: BLAST: pir:A75096; UTP--glucose-1-phosphate uridylyltransferase (EC; E=3e-20 gb:AAD32398.1; AAD32398 (AF065404) pXO1-94 [Bacillus anthracis]; E=4e-19 swissprot:Q54713; HASC_STRPY UTP--GLUCOSE-1-PHOSPHATE; E=2e-17 COG: PAB0771; COG1210 UDP-glucose pyrophosphorylase; E=3e-21 PAB0784; COG1209 dTDP-glucose pyrophosphorylase; E=3e-04 PFAM: PF00483; Nucleotidyl transferase; E=0.014 NP_868704.1 PMID: 8666250 best DB hits: BLAST: swissprot:Q43772; UDPG_HORVU UTP--GLUCOSE-1-PHOSPHATE; E=3e-04 swissprot:P57751; UDPG_ARATH UTP--GLUCOSE-1-PHOSPHATE; E=0.001 swissprot:O64459; UDPG_PYRPY UTP--GLUCOSE-1-PHOSPHATE; E=0.001 NP_868706.1 best DB hits: BLAST: pir:E82631; conserved hypothetical protein XF1840 [imported] -; E=4e-08 pir:F81836; probable periplasmic protein NMA1457 [imported] -; E=7e-08 pir:D81130; conserved hypothetical protein NMB1030 [imported] -; E=1e-07 COG: XF1840; COG2353 Uncharacterized BCR; E=4e-09 NP_868707.1 PMID: 8759846 best DB hits: BLAST: swissprot:P74361; CLPB_SYNY3 CLPB PROTEIN ----- pir: S76197; E=0.0 gb:AAK03788.1; (AE006206) ClpB [Pasteurella multocida]; E=0.0 swissprot:P53533; CLPB_SYNP7 CLPB PROTEIN ----- gb: AAB09631.1; E=0.0 COG: slr1641; COG0542 ATPases with chaperone activity, ATP-binding domain; E=0.0 PFAM: PF02861; Clp amino terminal domain; E=1.1e-07 PF02421; Ferrous iron transport protein; E=0.54 PF00004; ATPase associated with v; E=6e-14 NP_868709.1 PMID: 9061015 best DB hits: BLAST: ddbj:BAA19796.1; (D78133) DnaK protein [Rhodopseudomonas sp.]; E=0.0 gb:AAK00145.1; AF222752_1 (AF222752) heat shock protein; E=0.0 swissprot:P28608; DNAK_BORBU DNAK PROTEIN (HEAT SHOCK PROTEIN 70); E=0.0 COG: BB0518; COG0443 Molecular chaperone; E=0.0 PFAM: PF00012; Hsp70 protein; E=0 NP_868710.1 PMID: 1919506 best DB hits: BLAST: swissprot:O67085; PHEA_AQUAE P-PROTEIN [INCLUDES: CHORISMATE; E=2e-40 swissprot:P27603; PHEA_PSEST P-PROTEIN [INCLUDES: CHORISMATE; E=8e-40 gb:AAD47360.1; AF038578_3 (AF038578) chorismate mutaseprephenate; E=1e-38 COG: aq_951_2; COG0077 Prephenate dehydratase; E=9e-40 PFAM: PF00800; Prephenate dehydratase; E=4.5e-50 PF01842; ACT domain; E=3.1e-09 NP_868711.1 PMID: 8997703 best DB hits: BLAST: pir:H82493; MoxR-related protein VCA0175 [imported] - Vibrio; E=4e-67 pir:C75037; methanol dehydrogenase regulatory protein (moxr-3); E=3e-65 pir:G71146; hypothetical protein PH0385 - Pyrococcus horikoshii; E=6e-65 COG: VCA0175; COG0714 MoxR-like ATPases; E=4e-68 PFAM: PF00004; ATPase associated with; E=0.00052 PF01078; Magnesium chelatase, subunit; E=0.00014 NP_868712.1 PMID: 2170947 PMID: 2540413 best DB hits: BLAST: swissprot:O84193; GYRB_CHLTR DNA GYRASE SUBUNIT B ----- pir:; E=1e-154 gb:AAC33551.1; (AF044267) gyrase subunit B [Chlamydia; E=1e-153 swissprot:P13364; GYRB_PSEPU DNA GYRASE SUBUNIT B ----- pir:; E=1e-141 COG: CT190; COG0187 DNA gyrase (topoisomerase II) B subunit; E=1e-155 PFAM: PF02518; Histidine kinase-, DNA gyrase B; E=2.2e-17 PF00204; DNA topoisomerase II (N-termina; E=6.5e-78 PF00750; tRNA synthetases class I (R); E=0.49 NP_868713.1 best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=0.037 embl:CAB57415.1; (AL121746) hypothetical protein SCF73.10c; E=0.075 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=0.003 PFAM: PF01011; PQQ enzyme repeat; E=0.25 NP_868714.1 best DB hits: BLAST: pir:E83275; thymidylate kinase PA2962 [imported] - Pseudomonas; E=0.27 NP_868715.1 best DB hits: BLAST: pir:A83103; conserved hypothetical protein PA4336 [imported] -; E=3e-62 gb:AAF26988.1; AC018363_33 (AC018363) unknown protein [Arabidopsis; E=2e-55 gb:AAD56430.1; AF158699_2 (AF158699) unknown [Burkholderia; E=1e-51 COG: PA4336; COG0693 intracellular protease/amidase; E=3e-63 PAB1200; COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase,; E=5e-04 Cj0899c; COG0693 intracellular protease/amidase; E=5e-04 PFAM: PF01965; ThiJ/PfpI family; E=2.5e-45 NP_868717.1 best DB hits: BLAST: pir:A82306; conserved hypothetical protein VC0580 [imported] -; E=1e-05 swissprot:Q10819; YS98_MYCTU HYPOTHETICAL 14.2 KDA PROTEIN RV2898C; E=8e-04 pir:H83091; conserved hypothetical protein PA4424 [imported] -; E=0.001 COG: VC0580; COG0792 Predicted endonuclease distantly related to archaeal; E=1e-06 Rv2898c; COG0792 Predicted endonuclease distantly related to; E=8e-05 PA4424; COG0792 Predicted endonuclease distantly related to archaeal; E=1e-04 PFAM: PF02021; Uncharacterised protein family; E=1.4e-18 NP_868718.1 PMID: 99047594 best DB hits: BLAST: pir:B82973; probable peptidic bond hydrolase PA5390 [imported] -; E=2e-32 gb:AAC82366.1; (AF055904) acetylornithine deacetylase; ArgE; E=3e-31 gb:AAK03201.1; (AE006153) ArgE [Pasteurella multocida]; E=8e-27 COG: PA5390; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate; E=2e-33 BS_argE; COG0624 Acetylornithine; E=8e-12 AF0904; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate; E=1e-10 PFAM: PF01546; Peptidase M20/M25/M40; E=0.12 NP_868719.1 best DB hits: BLAST: ddbj:BAA75383.1; (AB013374) Ykok [Bacillus halodurans]; E=5e-38 ddbj:BAB04230.1; (AP001508) magnesium (Mg2+) transporter; E=5e-38 pir:B81018; magnesium transporter NMB1999 [imported] - Neisseria; E=2e-37 COG: BH0511; COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain); E=5e-39 PFAM: PF00571; CBS domain; E=0.081 PF01769; Divalent cation transporter; E=7.3e-28 NP_868720.1 best DB hits: BLAST: pir:T36406; hypothetical protein SCF34.07 - Streptomyces coelicolor; E=1e-06 pir:F75417; L-sorbosone dehydrogenase - Deinococcus radiodurans; E=7e-04 pir:C75617; probable oxidoreductase - Deinococcus radiodurans; E=0.022 COG: DR1257; COG2133 Glucose/sorbosone dehydrogenases; E=7e-05 PFAM: PF02837; Glycosyl hydrolases family 2,; E=0.00037 PF00034; Cytochrome c; E=0.0092 NP_868724.1 best DB hits: BLAST: swissprot:P55480; Y4HM_RHISN HYPOTHETICAL PROTEIN Y4HM PRECURSOR; E=7e-52 pir:D69803; hypothetical protein yfiI - Bacillus subtilis -----; E=7e-49 pir:T34927; probable oxidoreductase - Streptomyces coelicolor; E=1e-21 COG: BS_yfiI; COG0673 Predicted dehydrogenases and related proteins; E=7e-50 PFAM: PF01408; Oxidoreductase, NAD-bin; E=6.1e-30 PF02894; Oxidoreductase, C-termi; E=2.5e-09 NP_868725.1 PMID: 10518523 PMID: 11427897 best DB hits: BLAST: swissprot:Q06755; ISPD_BACSU; E=2e-32 pir:S66119; conserved hypothetical protein yacM - Bacillus subtilis; E=7e-32 swissprot:Q9KGF8; ISPD_BACHD; E=4e-28 COG: BS_yacM; COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; E=7e-33 PFAM: PF01128; Uncharacterized protein family UPF00; E=4.2e-63 NP_868726.1 PMID: 3011073 best DB hits: BLAST: swissprot:P04077; SYY_BACCA TYROSYL-TRNA SYNTHETASE; E=1e-104 swissprot:P00952; SYY_BACST TYROSYL-TRNA SYNTHETASE; E=1e-104 swissprot:P22326; SYY1_BACSU TYROSYL-TRNA SYNTHETASE 1; E=1e-98 COG: BS_tyrS; COG0162 Tyrosyl-tRNA synthetase; E=1e-99 PFAM: PF00579; tRNA synthetases class I (W and; E=2.3e-107 NP_868727.1 PMID: 8917072 best DB hits: BLAST: pir:T05214; hypothetical protein F17I5.50 - Arabidopsis thaliana; E=1e-14 pir:T00624; endo-1,4-beta-xylanase homolog T27I1.7 - Arabidopsis; E=6e-14 ddbj:BAA88262.1; (AB008015) similar to xylan endohydrolase; E=1e-12 NP_868728.1 PMID: 9873033 best DB hits: BLAST: pir:E72640; hypothetical protein APE0557 - Aeropyrum pernix (strain; E=7e-07 embl:CAC22834.1; (AL512963) hypothetical [Sulfolobus; E=5e-06 swissprot:P37872; YBXB_BACSU HYPOTHETICAL 22.5 KDA PROTEIN IN; E=9e-06 COG: APE0557; COG0116 Predicted N6-adenine-specific DNA methylases; E=7e-08 BS_ybxB; COG2813 16S RNA G1207 methylase RsmC; E=9e-07 MTH1918; COG2263 Predicted RNA methylase; E=0.004 NP_868729.1 best DB hits: BLAST: embl:CAA62188.1; (X90568) Protein sequence and annotation; E=0.25 pir:I38344; titin, cardiac muscle [validated] - human; E=0.25 NP_868732.1 best DB hits: BLAST: pir:A72314; hypothetical protein TM0950 - Thermotoga maritima; E=0.001 NP_868736.1 best DB hits: BLAST: pir:B70374; conserved hypothetical protein aq_854 - Aquifex aeolicus; E=2e-04 pir:H71261; conserved hypothetical protein TP0954 - syphilis; E=0.21 gb:AAF26789.1; AC016829_13 (AC016829) O-linked GlcNAc; E=0.44 COG: aq_854; COG0457 TPR-repeat-containing proteins; E=2e-05 PFAM: PF00515; TPR Domain; E=0.14 NP_868741.1 best DB hits: BLAST: pir:G70687; hypothetical protein Rv1732c - Mycobacterium; E=5e-13 pir:S75290; hypothetical protein sll1289 - Synechocystis sp. (strain; E=6e-11 gb:AAG19194.1; (AE005016) Vng0711c [Halobacterium sp. NRC-1]; E=1e-10 COG: Rv1732c; COG0526 Thiol-disulfide isomerase and thioredoxins; E=5e-14 DR2242; COG0450 Thiol - alkyl hydroperoxide reductases; E=4e-06 BS_yneN; COG0526 Thiol-disulfide isomerase and thioredoxins; E=5e-06 PFAM: PF00578; AhpC/TSA family; E=0.00037 PF00255; Glutathione peroxidase; E=0.77 NP_868743.1 PMID: 10531250 best DB hits: BLAST: pir:G70415; nucleotide sugar epimerase - Aquifex aeolicus -----; E=5e-90 ddbj:BAB07428.1; (AP001519) nucleotide sugar epimerase; E=6e-57 gb:AAD50494.1; AF172324_12 (AF172324) WbnF [Escherichia coli]; E=2e-55 COG: aq_1335; COG0451 Nucleoside-diphosphate-sugar epimerases; E=5e-91 XF0255; COG1088 dTDP-D-glucose 4,6-dehydratase; E=1e-23 PA1384; COG1087 UDP-glucose 4-epimerase; E=1e-23 PFAM: PF00106; short chain dehydrogenase; E=0.16 PF01370; NAD dependent epimerase/dehydratase; E=8.9e-98 NP_868744.1 PMID: 8226648 best DB hits: BLAST: pir:A82264; UDP-N-acetylglucosamine 2-epimerase VC0917 [imported] -; E=1e-106 pir:T44828; probable UDP-N-acetylglucosamine 2-epimerase (EC; E=1e-101 swissprot:P27828; WECB_ECOLI UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE; E=1e-101 COG: VC0917; COG0381 UDP-N-acetylglucosamine 2-epimerase; E=1e-107 PFAM: PF02350; UDP-N-acetylglucosamine 2-epimera; E=1.7e-162 NP_868746.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_868749.1 PMID: 8439670 best DB hits: BLAST: pir:F70345; polysaccharide biosynthesis protein - Aquifex aeolicus; E=2e-07 pir:S70958; otnA protein - Vibrio cholerae ----- embl:; E=1e-06 swissprot:Q02728; EXOF_RHIME EXOPOLYSACCHARIDE PRODUCTION PROTEIN; E=3e-05 COG: aq_505; COG1596 Periplasmic protein involved in polysaccharide; E=2e-08 yccZ; COG1596 Periplasmic protein involved in polysaccharide export; E=1e-05 PA2234; COG1596 Periplasmic protein involved in polysaccharide; E=0.001 PFAM: PF00159; Pancreatic hormone peptide; E=0.82 NP_868750.1 PMID: 6350601 best DB hits: BLAST: gb:AAK05382.1; AE006360_11 (AE006360) diaminopimelate; E=1e-106 swissprot:P31851; TABA_PSESZ TABA PROTEIN ----- pir: S27649; E=6e-92 swissprot:O27390; DCDA_METTH DIAMINOPIMELATE DECARBOXYLASE (DAP; E=7e-59 COG: MTH1335; COG0019 Diaminopimelate decarboxylase; E=7e-60 PFAM: PF02784; Pyridoxal-dependent decarboxy; E=3.1e-40 PF00278; Pyridoxal-dependent decarboxy; E=1.4e-29 NP_868751.1 best DB hits: BLAST: pir:E75319; ferredoxin - Deinococcus radiodurans (strain R1) -----; E=2e-18 pir:C83272; Na+-translocating NADH:quinone oxidoreductase, subunit; E=0.002 gb:AAD03987.1; (AF079317) xylene monooxygenase electron transfer; E=0.005 COG: DR2075; COG0633 Ferredoxin; E=2e-19 PA2994; COG2871 Na+-transporting NADH:ubiquinone oxidoreductase beta; E=2e-04 CPn0883; COG2871 Na+-transporting NADH:ubiquinone oxidoreductase; E=0.001 PFAM: PF00111; 2Fe-2S iron-sulfur cluster binding d; E=2.6e-05 NP_868753.1 PMID: 7910580 PMID: 1572648 best DB hits: BLAST: embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=2e-27 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=2e-27 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=7e-27 COG: aslA; COG3119 Arylsulfatase A and related enzymes; E=9e-22 PFAM: PF00884; Sulfatase; E=1.5e-55 NP_868755.1 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=1e-05 embl:CAB94634.1; (AL359215) secreted glycosyl hydrolase.; E=1e-04 NP_868759.1 PMID: 97000351 PMID: 99411980 PMID: 2668691 PMID: 2190615 best DB hits: BLAST: embl:CAB65573.1; (AL136058) probable; E=1e-51 ddbj:BAB07147.1; (AP001518) p-nitrophenyl phosphatase [Bacillus; E=4e-43 swissprot:P15302; NAGD_ECOLI NAGD PROTEIN ----- pir: B64802; E=6e-42 COG: BH3428; COG0647 Predicted sugar phosphatases of the HAD superfamily; E=4e-44 VNG0719G; COG0647 Predicted sugar phosphatases of the HAD; E=7e-31 BH1074; COG0647 Predicted sugar phosphatases of the HAD superfamily; E=2e-24 PFAM: PF00702; haloacid dehalogenase-like hydr; E=2.9e-14 NP_868760.1 best DB hits: BLAST: pir:E72310; hypothetical protein - Thermotoga maritima (strain MSB8); E=8e-06 pir:F83085; conserved hypothetical protein PA4489 [imported] -; E=9e-06 ddbj:BAA12317.1; (D84339) murinoglobulin [Cavia porcellus]; E=9e-05 COG: TM0984; COG2373 Large extracellular alpha-helical protein; E=8e-07 NP_868761.1 PMID: 9163424 best DB hits: BLAST: swissprot:P55478; Y4HK_RHISN HYPOTHETICAL 25.4 KD PROTEIN Y4HK; E=8e-07 gb:AAG60981.1; AF322013_100 (AF322013) ID687 [Bradyrhizobium; E=2e-04 PFAM: PF02056; Family 4 glycosyl hydrolase; E=0.31 PF01925; Domain of unknown function DUF8; E=0.00091 NP_868762.1 PMID: 8663056 PMID: 10600118 PMID: iscS best DB hits: BLAST: pir:E81852; NifS-like aminotranfserase NMA1594 [imported] -; E=1e-63 gb:AAF62329.1; (AE002486) nifS protein [Neisseria meningitidis; E=9e-63 pir:A71652; iron-sulfur cofactor synthesis protein RP486 -; E=1e-60 COG: NMB1379; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; E=8e-64 PFAM: PF00266; Aminotransferase class-V; E=3.4e-70 NP_868763.1 PMID: 9469931 best DB hits: BLAST: swissprot:P00639; DRN1_BOVIN DEOXYRIBONUCLEASE I PRECURSOR (DNASE; E=6e-11 pdb:3DNI; Deoxyribonuclease I (Dnase I) (E.C.3.1.21.1) -----; E=6e-11 pdb:1ATN; D Chain D, Deoxyribonuclease I Complex With Actin; E=9e-11 PFAM: PF01181; Deoxyribonuclease I (DNase I); E=0.053 NP_868764.1 PMID: 9823893 best DB hits: BLAST: swissprot:Q9ZDY4; ODO2_RICPR DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE; E=4e-93 pir:S42875; dihydrolipoamide S-succinyltransferase (EC 2.3.1.61) -; E=7e-92 swissprot:P52993; ODO2_ALCEU DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE; E=7e-92 COG: RP179; COG0508 Dihydrolipoamide acyltransferases; E=4e-94 PFAM: PF00364; Biotin-requiring enzyme; E=5e-17 PF02817; e3 binding domain; E=1.8e-14 PF00198; 2-oxo acid dehydrogenases acylt; E=2.2e-96 NP_868765.1 PMID: 1830053 best DB hits: BLAST: ddbj:BAA86537.1; (AB033049) KIAA1223 protein [Homo sapiens]; E=5e-12 gb:AAF56803.1; (AE003766) CG10011 gene product [Drosophila; E=5e-12 pir:T25412; hypothetical protein T28D6.4 - Caenorhabditis elegans; E=1e-11 COG: XF1640; COG0666 Ankyrin repeat proteins; E=2e-07 PFAM: PF00023; Ank repeat; E=0.00059 NP_868766.1 best DB hits: BLAST: pir:F70418; conserved hypothetical protein aq_1365 - Aquifex; E=9e-24 embl:CAB94036.1; (AL358652) conserved hypothetical protein; E=6e-21 gb:AAB90387.1; (AE001045) conserved hypothetical protein; E=6e-19 COG: aq_1365_1; COG0062 Uncharacterized ACR; E=5e-22 NP_868768.1 PMID: 11761711 PMID: 8606151 best DB hits: BLAST: gb:AAK01318.1; (AF190580) MucD [Pseudomonas syringae pv.; E=0.010 gb:AAB01513.1; (U30799) MucD [Azotobacter vinelandii]; E=0.087 pir:F83550; serine proteinase MucD precursor PA0766 [imported] -; E=0.50 PFAM: PF00595; PDZ domain (Also known as DHR or; E=7.1e-05 NP_868770.1 PMID: 9990318 best DB hits: BLAST: swissprot:P39405; FHUF_ECOLI FERRIC IRON REDUCTase FHUF; E=0.82 gb:AAG59550.1; AE005668_5 (AE005668) orf, hypothetical protein; E=0.85 NP_868774.1 best DB hits: BLAST: embl:CAB93418.1; (AL357524) transposase [Streptomyces; E=0.60 NP_868776.1 PMID: 9163424 best DB hits: BLAST: swissprot:P55473; NOEI_RHISN NODULATION PROTEIN NOEI ----- gb:; E=0.004 gb:AAF67136.1; AF228683_3 (AF228683) nodulation protein NoeI; E=0.006 pir:S73065; u0002kb protein - Mycobacterium tuberculosis -----; E=0.014 COG: sll1456; COG0500 SAM-dependent methyltransferases; E=0.003 NP_868778.1 PMID: 20127862 PMID: 10350455 best DB hits: BLAST: pir:B81318; probable two-domain glycosyltransferase Cj1135; E=1e-20 gb:AAF34140.1; (AF167344) glycosyltransferase [Campylobacter; E=2e-13 gb:AAG43975.1; AF215659_3 (AF215659) glycosyltransferase; E=2e-13 COG: Cj1135; COG0463 Glycosyltransferases involved in cell wall; E=1e-21 aq_1407; COG1215 Glycosyltransferases, probably involved in cell; E=0.010 PFAM: PF00535; Glycosyl transferase; E=2.8e-19 NP_868779.1 PMID: 10377135 PMID: 99195826 PMID: 7721792 best DB hits: BLAST: pir:T44328; hypothetical protein wblA [imported] - Vibrio cholerae; E=7e-32 gb:AAD40713.1; AF048749_9 (AF048749) fucosyl transferase; E=1e-18 gb:AAD29863.1; (AF093828) alpha-1,2-fucosyltransferase; E=2e-18 PFAM: PF01531; Glycosyl transferase 1; E=2.2e-16 NP_868780.1 best DB hits: BLAST: pir:D70714; hypothetical protein Rv1513 - Mycobacterium tuberculosis; E=2e-04 pir:S73065; u0002kb protein - Mycobacterium tuberculosis -----; E=0.021 embl:CAA11577.1; (AJ223833) gsc [Mycobacterium avium subsp.; E=0.080 NP_868781.1 best DB hits: BLAST: pir:E83602; hypothetical protein PA0343 [imported] - Pseudomonas; E=4e-07 pir:C82785; hypothetical protein XF0607 [imported] - Xylella; E=0.17 gb:AAF86398.1; AF235504_19 (AF235504) FkbM [Streptomyces; E=0.73 NP_868782.1 best DB hits: PFAM: PF01668; SmpB protein; E=0.84 PF00535; Glycosyl transferase; E=0.029 NP_868783.1 PMID: 11371519 PMID: 97315213 best DB hits: BLAST: gb:AAD37767.1; AF146532_7 (AF146532) heptosyl III; E=9e-13 gb:AAK03386.1; (AE006169) OpsX [Pasteurella multocida]; E=3e-07 embl:CAA07672.1; (AJ007747) heptosyltransferase; E=5e-07 COG: HI0261; COG0859 ADP-heptose:LPS heptosyltransferase; E=3e-07 PFAM: PF01075; Glycosyltransferase 9 (; E=6.9e-06 NP_868785.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs NP_868786.1 best DB hits: BLAST: pir:C83451; conserved hypothetical protein PA1563 [imported] -; E=0.089 pir:A82768; conserved hypothetical protein XF0748 [imported] -; E=0.11 COG: PA1563; COG2933 Predicted SAM-dependent methyltransferase; E=0.008 NP_868787.1 PMID: 9884231 best DB hits: BLAST: embl:CAA06650.1; (AJ005645) sdrc [Staphylococcus aureus]; E=0.21 NP_868788.1 best DB hits: BLAST: ddbj:BAA37082.1; (AB022095) ORF2 [Streptomyces griseus]; E=5e-45 embl:CAC04221.1; (AL391515) conserved hypothetical protein; E=9e-35 pir:G69070; coenzyme F390 synthetase I - Methanobacterium; E=0.004 COG: MTH1528; COG1541 Coenzyme F390 synthetase; E=4e-04 PFAM: PF00031; Cystatin domain; E=0.0015 NP_868789.1 best DB hits: BLAST: embl:CAC04220.1; (AL391515) conserved hypothetical protein; E=1e-21 ddbj:BAA37083.1; (AB022095) ORF3 [Streptomyces griseus]; E=8e-13 pir:E70961; hypothetical protein Rv0223c - Mycobacterium; E=4e-06 COG: Rv0223c; COG1012 NAD-dependent aldehyde dehydrogenases; E=3e-07 PFAM: PF00171; Aldehyde dehydrogenase; E=0.21 NP_868791.1 best DB hits: BLAST: pir:A72347; hypothetical protein TM0675 - Thermotoga maritima; E=1e-08 ddbj:BAB06167.1; (AP001515) BH2448~unknown conserved protein in; E=4e-05 pir:B70135; flagellar protein (flbD) homolog - Lyme disease; E=3e-04 COG: TM0675; COG1582 Uncharacterized protein, possibly involved in; E=1e-09 NP_868792.1 PMID: 99254111 best DB hits: BLAST: swissprot:P46826; YTXD_BACME HYPOTHETICAL 29.3 KD PROTEIN IN CCPA; E=9e-35 swissprot:O06873; POMA_VIBAL CHEMOTAXIS POMA PROTEIN -----; E=2e-31 gb:AAD15904.1; (AF069391) sodium-driven polar flagellar protein; E=3e-31 COG: BS_ytxD; COG1291 Flagellar motor component; E=5e-32 PFAM: PF01618; MotA/TolQ/ExbB proton channel famil; E=0.0002 NP_868793.1 PMID: 7934817 PMID: 9387221 PMID: 1447140 best DB hits: BLAST: swissprot:P39064; YTXE_BACSU HYPOTHETICAL 27.6 KD PROTEIN IN ACUC; E=2e-10 gb:AAB94398.1; (U91841) MotB homolog [Bacillus firmus]; E=3e-09 ddbj:BAB06958.1; (AP001518) BH3239~unknown conserved protein; E=2e-07 COG: BS_ytxE; COG1360 Flagellar motor protein; E=2e-11 PA0973; COG2885 Outer membrane protein and related; E=5e-05 PFAM: PF00691; OmpA family; E=1.4e-11 NP_868794.1 PMID: 10368162 best DB hits: BLAST: gb:AAC05584.1; (AF006075) dihydrolipoamide acetyltransferase; E=0.090 swissprot:O31550; ACOC_BACSU DIHYDROLIPOAMIDE ACETYLTRANSFERASE; E=0.090 COG: BS_acoC; COG0508 Dihydrolipoamide acyltransferases; E=0.009 NP_868795.1 PMID: 2656645 PMID: 2651416 best DB hits: BLAST: swissprot:P35539; FLIN_ERWCA FLAGELLAR MOTOR SWITCH PROTEIN FLIN; E=5e-16 swissprot:P24073; FLIY_BACSU FLAGELLAR MOTOR SWITCH PROTEIN FLIY; E=8e-16 swissprot:P26419; FLIN_SALTY FLAGELLAR MOTOR SWITCH PROTEIN FLIN; E=2e-15 COG: BS_fliY_2; COG1886 Flagellar motor switch/type III secretory pathway; E=6e-17 PFAM: PF01052; Surface presentation of antigens (SP; E=2.5e-25 NP_868796.1 best DB hits: BLAST: swissprot:P49080; AKH2_MAIZE BIFUNCTIONAL ASPARTOKINASEHOMOSERINE; E=0.43 NP_868797.1 PMID: 7813451 PMID: 2668276 best DB hits: BLAST: pir:A83065; hypothetical protein PA4657 [imported] - Pseudomonas; E=4e-47 swissprot:P12769; PHR_METTH DEOXYRIBODIPYRIMIDINE PHOTOLYASE (DNA; E=6e-41 swissprot:P34205; PHR_CARAU DEOXYRIBODIPYRIMIDINE PHOTOLYASE (DNA; E=4e-37 COG: PA4657; COG3380 Predicted NAD/FAD-dependent oxidoreductase; E=3e-48 MTH904; COG0415 Deoxyribodipyrimidine photolyase; E=5e-42 sll1135; COG3380 Predicted NAD/FAD-dependent oxidoreductase; E=1e-21 PFAM: PF00875; DNA photolyase; E=6.3e-06 PF02254; KTN NAD-binding domain; E=0.19 PF01266; D-amino acid oxidase; E=0.0088 NP_868798.1 PMID: 97227932 PMID: 1594600 best DB hits: BLAST: pir:T35402; probable phytoene dehydrogenase - Streptomyces; E=7e-25 pir:T10701; probable phytoene dehydrogenase (EC 1.3.-.-) - green; E=3e-18 embl:CAA60479.1; (X86783) Phytoene desaturase [Haematococcus; E=1e-15 COG: slr1254; COG3349 Uncharacterized ACR; E=5e-14 PFAM: PF01593; Flavin containing amine oxidase; E=0.51 PF01494; FAD binding domain; E=0.00029 PF01266; D-amino acid oxidase; E=0.019 NP_868799.1 PMID: 1537409 best DB hits: BLAST: pir:T35400; probable phytoene synthase - Streptomyces coelicolor; E=5e-25 pir:A81118; phytoene synthase, probable NMB1130, NMB1168 [imported]; E=3e-21 swissprot:P37269; CRTB_SYNP7 PHYTOENE SYNTHASE ----- pir:; E=5e-21 COG: NMB1130; COG1562 Phytoene/squalene synthetase; E=3e-22 PFAM: PF00494; Squalene/phytoene synthase; E=0.0026 NP_868800.1 PMID: 20175755 PMID: 1537409 best DB hits: BLAST: pir:H81074; phytoene synthase-related protein NMB1521 [imported] -; E=6e-38 pir:D81868; probable transferase NMA1721 [imported] - Neisseria; E=2e-37 pir:T35399; probable phytoene synthase - Streptomyces coelicolor; E=2e-25 COG: NMB1521; COG1562 Phytoene/squalene synthetase; E=5e-39 PFAM: PF00494; Squalene/phytoene synthase; E=2.8e-23 NP_868801.1 PMID: 11818558 best DB hits: BLAST: pir:G83076; LytB protein PA4557 [imported] - Pseudomonas aeruginosa; E=4e-81 gb:AAD55804.1; (AF027189) LytB [Acinetobacter sp. BD413]; E=1e-80 pir:G82293; lytB protein VC0685 [imported] - Vibrio cholerae (group; E=7e-77 COG: PA4557; COG0761 Penicillin tolerance protein; E=4e-82 PFAM: PF02401; LytB protein; E=2.4e-132 NP_868802.1 best DB hits: BLAST: ddbj:BAA91540.1; (AK001182) unnamed protein product [Homo sapiens]; E=9e-08 embl:CAB98267.1; (AJ276171) ASPIC [Homo sapiens]; E=1e-07 embl:CAB98268.1; (AJ276171) ASPIC [Homo sapiens] ----- embl:; E=1e-07 COG: nfrA; COG0457 TPR-repeat-containing proteins; E=0.002 NP_868803.1 PMID: 97061201 PMID: 10333591 PMID: 10669803 best DB hits: BLAST: pir:S77094; glycogen operon protein (EC 3.2.1.-) glgX-2 -; E=1e-149 pir:S74546; glycogen operon protein (EC 3.2.1.-) glgX-1 -; E=1e-139 embl:CAB92884.1; (AL356932) glycogen debranching enzyme.; E=1e-136 COG: slr1857; COG1523 Pullulanase and related glycosidases; E=1e-151 DR0464; COG0296 1,4-alpha-glucan branching enzyme; E=3e-17 DR0405; COG1523 Pullulanase and related glycosidases; E=3e-12 PFAM: PF02922; Isoamylase N-terminal domain; E=1.3e-22 PF00128; Alpha amylase, catalytic domain; E=9.7e-21 NP_868806.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_868808.1 PMID: 339950 best DB hits: BLAST: pir:C81433; 50S ribosomal protein L31 Cj0155c [imported] -; E=2e-17 swissprot:O66075; RL31_TREPA 50S RIBOSOMAL PROTEIN L31 -----; E=9e-17 swissprot:P45834; RL31_MYCLE 50S RIBOSOMAL PROTEIN L31 -----; E=5e-16 COG: Cj0155c; COG0254 Ribosomal protein L31; E=2e-18 PFAM: PF01197; Ribosomal protein L31; E=1.6e-37 NP_868809.1 PMID: 9353933 PMID: 8662205 best DB hits: BLAST: swissprot:P45872; RF1_BACSU PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1); E=1e-80 swissprot:P43917; RF1_HAEIN PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1); E=2e-79 gb:AAK02639.1; (AE006091) PrfA [Pasteurella multocida]; E=6e-79 COG: BS_prfA; COG0216 Protein chain release factor A; E=1e-81 PFAM: PF00472; Peptidyl-tRNA hydrolase domain; E=2.2e-66 NP_868810.1 PMID: 11805295 best DB hits: BLAST: pir:A82109; hemK protein VC2178 [imported] - Vibrio cholerae (group; E=4e-33 ddbj:BAB07493.1; (AP001519) protoporphyrinogen oxidase [Bacillus; E=7e-33 swissprot:P45873; HEMK_BACSU HEMK PROTEIN HOMOLOG ----- pir:; E=8e-32 COG: VC2178; COG2890 Predicted rRNA or tRNA methylase; E=4e-34 PFAM: PF02390; methyltransferase; E=0.19 NP_868812.1 best DB hits: PFAM: PF02321; Outer membrane efflux protein; E=5.8e-06 NP_868814.1 best DB hits: PFAM: PF00364; Biotin-requiring enzyme; E=0.13 PF02749; Quinolinate phosphoribosyl tran; E=0.19 NP_868815.1 PMID: 11004187 best DB hits: BLAST: swissprot:P77239; YLCD_ECOLI HYPOTHETICAL 44.3 KDA PROTEIN IN; E=0.003 gb:AAG54907.1; AE005237_3 (AE005237) resistance protein; E=0.003 pir:A72386; conserved hypothetical protein - Thermotoga maritima; E=0.037 COG: ylcD; COG0845 Membrane-fusion protein; E=3e-04 PFAM: PF00364; Biotin-requiring enzyme; E=0.0042 PF00529; HlyD family secretion protein; E=0.005 PF00364; Biotin-requiring enzyme; E=0.0068 NP_868816.1 best DB hits: BLAST: pir:G82300; conserved hypothetical protein VC0628 [imported] -; E=0.002 pir:F70091; hypothetical protein yydH - Bacillus subtilis -----; E=0.14 pir:D70385; hypothetical protein aq_986 - Aquifex aeolicus -----; E=0.31 COG: VC0628; COG0845 Membrane-fusion protein; E=2e-04 PFAM: PF02163; Sterol-regulatory element bindi; E=6.4e-05 NP_868817.1 PMID: 99000809 PMID: 97000351 best DB hits: BLAST: pir:G71532; probable threoninetyrosine-specific protein kinase (EC; E=4e-30 gb:AAF73573.1; (AE002326) serinethreonine protein kinase; E=3e-27 embl:CAB45034.1; (AL078635) WD-repeat containing protein; E=3e-26 COG: CT301_1; COG0515 Serine/threonine protein kinases; E=3e-31 sll0163; COG2319 WD40 repeat protein; E=1e-19 Rv1266c; COG0515 Serine/threonine protein kinases; E=1e-19 PFAM: PF00069; Protein kinase domain; E=1.1e-26 PF00400; WD domain, G-beta repeat; E=7.5e-06 NP_868818.1 best DB hits: PFAM: PF00956; Nucleosome assembly protein (NAP); E=0.78 NP_868821.1 PMID: 20222556 best DB hits: BLAST: pir:H81856; hypothetical protein NMA1628 [imported] - Neisseria; E=1e-17 pir:C81085; conserved hypothetical protein NMB1417 [imported] -; E=4e-17 embl:CAC01390.1; (AJ131360) WlaX protein [Campylobacter jejuni]; E=7e-17 COG: NMB1417; COG3298 Predicted 3'-5' exonuclease related to the; E=4e-18 NP_868823.1 best DB hits: BLAST: embl:CAB45034.1; (AL078635) WD-repeat containing protein; E=1e-12 swissprot:Q00808; HET1_PODAN VEGETATIBLE INCOMPATIBILITY PROTEIN; E=5e-12 gb:AAG40737.1; AF299085_1 (AF299085) Bap1 [Myxococcus xanthus]; E=3e-09 COG: slr0143_2; COG2319 WD40 repeat protein; E=2e-09 PFAM: PF00400; WD domain, G-beta repeat; E=0.87 NP_868824.1 PMID: 99098700 PMID: 98261511 best DB hits: BLAST: pir:T28679; fibrinogen-binding protein homolog - Staphylococcus aureus; E=9e-46 gb:AAF72509.1; AF245041_1 (AF245041) cell-surface adhesin; E=1e-37 embl:CAB75732.1; (Y18653) bone sialoprotein-binding protein; E=6e-24 NP_868826.1 PMID: 11073907 PMID: 9651254 best DB hits: BLAST: pir:D69063; conserved hypothetical protein MTH1474 -; E=2e-16 gb:AAB89943.1; (AE001014) D-arabino 3-hexulose 6-phosphate; E=7e-13 gb:AAG32954.1; (AF032114) formaldehyde-activating enzyme; E=3e-10 COG: MTH1474_1; COG1795 Uncharacterized archaeal domain; E=1e-17 NP_868827.1 PMID: 9882677 best DB hits: BLAST: pir:S74670; hypothetical protein sll1663 - Synechocystis sp. (strain; E=0.069 pir:D69108; phycocyanin alpha phycocyanobilin lyase CpcE -; E=0.20 pir:F83358; hypothetical protein PA2293 [imported] - Pseudomonas; E=0.35 COG: sll1663; COG1413 Phycocyanin alpha-subunit phycocyanobilin lyase and; E=0.007 NP_868830.1 best DB hits: BLAST: pir:D83545; probable helicase PA0799 [imported] - Pseudomonas; E=2e-96 embl:CAA67095.1; (X98455) SNF [Bacillus cereus]; E=8e-90 embl:CAB60181.1; (AL132824) helicase [Streptomyces; E=1e-86 COG: PA0799; COG0553 Superfamily II DNA/RNA helicases, SNF2 family; E=2e-97 PFAM: PF02561; Flagellar protein FliS; E=0.63 PF02156; Glycosyl hydrolase 26; E=0.62 PF00176; SNF2 and others N-terminal dom; E=1.5e-71 NP_868838.1 PMID: 2585490 best DB hits: BLAST: embl:CAA35604.1; (X17591) HsdS polypeptide, part of CfrA family; E=0.17 pir:NDECAS; type I site-specific deoxyribonuclease (EC 3.1.21.3); E=0.17 swissprot:P19705; T1SE_ECOLI TYPE I RESTRICTION ENZYME ECOEI; E=0.17 NP_868839.1 PMID: 7607524 best DB hits: BLAST: swissprot:P50196; MTE8_ECOLI MODIFICATION METHYLASE ECO47II; E=0.004 swissprot:P55393; Y4CK_RHISN REPLICATION PROTEIN A; E=0.35 NP_868842.1 catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester NP_868843.1 PMID: 9738023 best DB hits: BLAST: pir:E72265; conserved hypothetical protein - Thermotoga maritima; E=1e-45 gb:AAB90372.1; (AE001044) conserved hypothetical protein; E=3e-43 pir:B69080; conserved hypothetical protein MTH1597 -; E=2e-40 COG: TM1357; COG1690 Uncharacterized ACR; E=1e-46 PFAM: PF01139; Uncharacterized protein family UPF00; E=3e-38 PF00367; phosphotransferase system, EIIB; E=0.44 NP_868844.1 PMID: 9738023 best DB hits: BLAST: pir:C83074; transcriptional regulator RtcR PA4581 [imported] -; E=1e-163 swissprot:P38035; RTCR_ECOLI transcriptional regulator; E=1e-162 gb:AAA58220.1; (U18997) ORF_o532 [Escherichia coli]; E=1e-161 COG: rtcR_2; COG1221 NtrC family transcriptional regulators, ATPase; E=1e-111 atoC; COG2204 AAA superfamily ATPases with N-terminal receiver; E=8e-38 aq_218_2; COG1221 NtrC family transcriptional regulators, ATPase; E=3e-37 PFAM: PF00004; ATPase associated with variou; E=0.29 PF00158; Sigma-54 interaction domain; E=4e-84 NP_868846.1 best DB hits: BLAST: swissprot:P39879; YK26_PSEAE HYPOTHETICAL PROTEIN PA2026 -----; E=7e-06 gb:AAG57528.1; AE005471_5 (AE005471) cytochrome oxidase; E=0.004 ddbj:BAA16281.1; (D90870) similar to [SwissProt Accession Number; E=0.015 COG: PA2026; COG0385 Predicted Na+-dependent transporter; E=7e-07 NP_868847.1 PMID: 7952181 best DB hits: BLAST: swissprot:P42419; IOLI_BACSU IOLI PROTEIN ----- pir: A69646; E=3e-12 ddbj:BAB06034.1; (AP001515) myo-inositol catabolism [Bacillus; E=1e-08 pir:D83615; hypothetical protein PA0242 [imported] - Pseudomonas; E=1e-05 COG: BS_iolI; COG1082 Predicted endonucleases; E=3e-13 NP_868849.1 PMID: 3062174 PMID: 8494895 PMID: 11551184 best DB hits: BLAST: swissprot:O66943; HIS5_AQUAE AMIDOTRANSFERASE HISH ----- pir:; E=9e-37 gb:AAA81252.1; (U30821) glutamine amidotransferase [Cyanophora; E=7e-34 swissprot:O27568; HIS5_METTH AMIDOTRANSFERASE HISH ----- pir:; E=3e-33 COG: aq_732; COG0118 Glutamine amidotransferase; E=9e-38 PFAM: PF00117; Glutamine amidotransferase class-I; E=8.1e-34 NP_868850.1 PMID: 3027506 PMID: 2164680 best DB hits: BLAST: gb:AAK05906.1; AE006411_1 (AE006411) ATP-dependent DNA helicase; E=9e-60 pir:E83226; ATP-dependent DNA helicase RecQ PA3344 [imported] -; E=4e-58 pir:G75413; DNA helicase RecQ - Deinococcus radiodurans (strain R1); E=1e-56 COG: PA3344; COG0514 Superfamily II DNA helicase; E=4e-59 YPL119c; COG0513 Superfamily II DNA and RNA helicases; E=5e-12 PFAM: PF00270; DEAD/DEAH box helicase; E=1e-32 PF00271; Helicase conserved C-terminal d; E=3.8e-26 NP_868851.1 PMID: 9441671 best DB hits: BLAST: pir:T30213; G-cadherin - sea urchin (Lytechinus variegatus) -----; E=9e-17 ddbj:BAA84069.1; (AB028498) Flamingo [Drosophila melanogaster]; E=5e-14 gb:AAF02618.1; AF172329_1 (AF172329) starry night protein; E=5e-14 PFAM: PF00028; Cadherin domain; E=7.1e-08 NP_868853.1 PMID: 8576051 best DB hits: BLAST: swissprot:P18584; DEGP_CHLTR PROBABLE SERINE PROTEASE DO-LIKE; E=2e-39 pir:B81728; serine proteinase, HtrADegQ/DegS family TC0210; E=4e-39 swissprot:Q9Z6T0; DEGP_CHLPN PROBABLE SERINE PROTEASE DO-LIKE; E=2e-36 COG: CT823; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=2e-40 CPn0979; COG0265 Trypsin-like serine proteases, typically; E=2e-37 degQ; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=4e-31 PFAM: PF00089; Trypsin; E=3.9e-17 PF00595; PDZ domain (Also known as DHR or GLG; E=1.5e-07 NP_868854.1 PMID: 11337471 PMID: 7921236 best DB hits: BLAST: gb:AAK05734.1; AE006394_4 (AE006394) ribose ABC transporter; E=1e-16 pir:G72416; sugar ABC transporter, permease - Thermotoga; E=3e-16 pir:B69690; ribose ABC transporter (permease) rbsC - Bacillus; E=3e-16 COG: TM0112; COG1172 Ribose/xylose/arabinose/galactoside ABC-type; E=3e-17 rbsC; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport; E=2e-14 VCA0129; COG1172 Ribose/xylose/arabinose/galactoside ABC-type; E=3e-14 PFAM: PF02653; Branched-chain amino acid transp; E=6e-09 NP_868855.1 PMID: 3011793 PMID: 3086314 best DB hits: BLAST: gb:AAG59288.1; AE005642_7 (AE005642) ATP-binding protein; E=8e-88 ddbj:BAB06041.1; (AP001515) sugar ABC transporter (ATP-binding; E=1e-86 ddbj:BAB07449.1; (AP001519) ribose ABC transporter (ATP-binding; E=2e-86 COG: BH2322; COG1129 ABC-type sugar (aldose) transport system, ATPase; E=1e-87 PFAM: PF00005; ABC transporter; E=2.1e-51 NP_868856.1 PMID: 2555670 PMID: 2137818 best DB hits: BLAST: swissprot:P14312; FIXW_RHILE FIXW PROTEIN ----- pir: JQ0313; E=7e-12 swissprot:P36893; HELX_RHOCA THIOL:DISULFIDE INTERCHANGE PROTEIN; E=1e-08 pir:C70314; thiol-disulfide interchange protein tlpA [imported] -; E=3e-05 COG: aq_152; COG0526 Thiol-disulfide isomerase and thioredoxins; E=3e-06 PFAM: PF00085; Thioredoxin; E=4.6e-05 NP_868859.1 PMID: 11823852 best DB hits: PFAM: PF00263; Bacterial type II and III secretion; E=0.68 NP_868861.1 best DB hits: BLAST: swissprot:O54101; MMLB_STRCO MEMBRANE PROTEIN SC10A5.10C; E=2e-29 swissprot:P96706; YDGH_BACSU MEMBRANE PROTEIN YDGH; E=3e-17 swissprot:Q53902; MMLA_STRCO MEMBRANE PROTEIN ACTII-3; E=1e-15 COG: BS_ydgH; COG2409 Predicted transporters; E=3e-18 AF0459; COG1033 Membrane proteins related to SecD/SecF; E=3e-07 BS_ydfJ; COG2409 Predicted transporters; E=3e-07 NP_868863.1 PMID: 20042346 best DB hits: BLAST: swissprot:Q57163; YLEA_HAEIN HYPOTHETICAL PROTEIN HI0019 -----; E=2e-87 gb:AAK03085.1; (AE006140) unknown [Pasteurella multocida]; E=3e-85 pir:C81034; conserved hypothetical protein NMB1866 [imported] -; E=3e-85 COG: HI0019; COG0621 Fe-S oxidoreductases family 1; E=2e-88 PFAM: PF00919; Uncharacterized protein family UPF00; E=1e-42 NP_868864.1 PMID: 9634230 best DB hits: BLAST: pir:A75264; hypothetical protein - Deinococcus radiodurans (strain; E=2e-36 gb:AAF78805.1; (U33883) mitochondrial processing peptidase-like; E=1e-35 swissprot:O86835; YA12_STRCO HYPOTHETICAL ZINC PROTEASE SC9A10.02; E=7e-26 COG: DR2516; COG0612 Predicted Zn-dependent peptidases; E=2e-37 NP_868865.1 best DB hits: BLAST: swissprot:O33324; YR82_MYCTU HYPOTHETICAL ZINC PROTEASE RV2782C; E=3e-47 swissprot:O32965; YR82_MYCLE HYPOTHETICAL ZINC PROTEASE MLCB22.26C; E=7e-44 pir:H75263; probable zinc proteinase - Deinococcus radiodurans; E=9e-43 COG: Rv2782c; COG0612 Predicted Zn-dependent peptidases; E=3e-48 PFAM: PF00675; Insulinase (Peptidase M1; E=4.8e-38 NP_868869.1 PMID: 20002534 PMID: 20225833 best DB hits: BLAST: gb:AAD38020.1; AF148127_1 (AF148127) transposase [Porphyromonas; E=2e-13 ddbj:BAA83477.1; (AB009361) transposase [Porphyromonas; E=3e-13 ddbj:BAA92234.1; (AB031551) transposase [Bacillus subtilis]; E=4e-10 COG: BH0691; COG3385 Predicted transposase; E=4e-10 PFAM: PF01609; Transposase (IS4 family); E=6.2e-08 NP_868874.1 best DB hits: BLAST: swissprot:Q9R6X3; PHYB_ANASP CYANOBACTERIAL PHYTOCHROME B -----; E=5e-32 gb:AAB89763.1; (AE001000) signal-transducing histidine kinase; E=7e-28 pir:C75276; sensory box sensor histidine kinase - Deinococcus; E=5e-25 COG: DR2419_2; COG0642 Sensory transduction histidine kinases; E=5e-26 PFAM: PF00989; PAS domain; E=1.5e-06 PF00785; PAC motif; E=0.00034 PF00512; His Kinase A (phosphoacceptor) doma; E=1.3e-11 NP_868875.1 PMID: 8094880 PMID: 9575204 PMID: 11546864 best DB hits: BLAST: pir:G69815; ABC transporter (ATP-binding protein) homolog ygaD -; E=7e-74 ddbj:BAB04660.1; (AP001510) ABC transporter (ATP-binding protein); E=3e-66 swissprot:P27299; MSBA_ECOLI PROBABLE TRANSPORT ATP-BINDING; E=6e-65 COG: BS_ygaD; COG1132 ABC-type multidrug/protein/lipid transport system,; E=7e-75 PFAM: PF00664; ABC transporter transmembrane re; E=1.7e-13 PF01583; Adenylylsulfate kinase; E=0.7 PF01202; Shikimate kinase; E=0.27 NP_868876.1 best DB hits: BLAST: embl:CAB75310.1; (AL139164) lipoprotein [Streptomyces; E=0.011 NP_868877.1 PMID: 1629228 best DB hits: BLAST: gb:AAG22814.1; (AF299248) talin [Drosophila melanogaster]; E=0.78 NP_868878.1 best DB hits: BLAST: pir:G70121; conserved hypothetical protein BB0175 - Lyme disease; E=4e-10 pir:G82493; conserved hypothetical protein VCA0174 [imported] -; E=6e-09 swissprot:P71761; YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480; E=1e-08 COG: BB0175; COG1721 Uncharacterized ACR; E=3e-11 PFAM: PF01882; Protein of unknown function DUF58; E=3.1e-15 NP_868879.1 best DB hits: BLAST: pir:T47637; hypothetical protein T5N23.140 - Arabidopsis thaliana; E=5e-20 swissprot:Q55874; Y103_SYNY3 HYPOTHETICAL 45.8 KD PROTEIN SLL0103; E=2e-18 swissprot:P76481; YFBK_ECOLI HYPOTHETICAL 63.6 KD PROTEIN IN; E=3e-18 COG: sll0103; COG2304 Protein containing von Willebrand factor (vWF) type; E=2e-19 yfbK; COG2304 Protein containing von Willebrand factor (vWF) type A; E=3e-19 PFAM: PF00092; von Willebrand factor type A domain; E=4.8e-06 NP_868880.1 best DB hits: BLAST: embl:CAB64973.1; (AJ012050) VicK protein [Enterococcus faecalis]; E=2e-15 pir:C72228; sensor histidine kinase HpkA - Thermotoga maritima; E=5e-15 ddbj:BAB05664.1; (AP001513) two-component sensor histidine kinase; E=5e-15 COG: TM1654_2; COG0642 Sensory transduction histidine kinases; E=5e-16 PFAM: PF00193; Extracellular link domain; E=0.19 PF00512; His Kinase A (phosphoacceptor) doma; E=2.9e-16 PF02518; Histidine kinase-, DNA gyrase B-, p; E=6.3e-27 NP_868881.1 PMID: 1454550 best DB hits: BLAST: embl:CAB90891.1; (AL355753) two-component system response; E=4e-40 swissprot:P37478; YYCF_BACSU HYPOTHETICAL 27.2 KD SENSORY; E=5e-40 gb:AAD10263.1; (AF036966) response regulator; E=9e-40 COG: BS_yycF; COG0745 Response regulators consisting of a CheY-like; E=5e-41 ompR; COG0745 Response regulators consisting of a CheY-like receiver; E=8e-37 TM1655; COG0745 Response regulators consisting of a CheY-like; E=7e-36 PFAM: PF00072; Response regulator receiver doma; E=3.9e-38 PF00486; Transcriptional regulatory prote; E=4.2e-23 NP_868883.1 best DB hits: BLAST: pir:S76975; hypothetical protein - Synechocystis sp. (strain PCC; E=1e-10 pir:S74748; hypothetical protein slr0981 - Synechocystis sp. (strain; E=2e-08 pir:B70303; hypothetical protein aq_037 - Aquifex aeolicus -----; E=4e-08 NP_868885.1 PMID: 7774814 best DB hits: BLAST: embl:CAB94054.1; (AL358672) serinethreonine-protein; E=9e-43 swissprot:P54736; PKN2_MYXXA SERINETHREONINE-PROTEIN KINASE PKN2; E=4e-39 swissprot:Q10697; PKNJ_MYCTU PROBABLE SERINETHREONINE-PROTEIN; E=2e-38 COG: Rv2088; COG0515 Serine/threonine protein kinases; E=2e-39 PFAM: PF00069; Protein kinase domain; E=1.6e-54 NP_868886.1 best DB hits: BLAST: ddbj:BAB05334.1; (AP001512) RNA polymerase sigma factor Y; E=5e-04 swissprot:Q44583; NCCH_ALCXX RNA POLYMERASE SIGMA FACTOR NCCH; E=6e-04 embl:CAB55345.1; (AJ010584) ECF sigma factor [Streptomyces; E=6e-04 COG: BH1615; COG1595 DNA-directed RNA polymerase specialized sigma; E=4e-05 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=2.8e-10 PF00140; Sigma-70 factor; E=0.11 NP_868887.1 best DB hits: BLAST: pir:T36423; probable large, multifunctional secreted protein -; E=4e-50 embl:CAB45032.1; (AL078635) large multi-functional; E=6e-45 NP_868888.1 best DB hits: BLAST: embl:CAB58265.1; (AL121849) multi-domain protein; E=6e-33 embl:CAB45032.1; (AL078635) large multi-functional; E=1e-32 pir:T36423; probable large, multifunctional secreted protein -; E=1e-06 PFAM: PF00034; Cytochrome c; E=0.023 NP_868890.1 best DB hits: BLAST: embl:CAB89030.1; (AL353870) integral membrane protein.; E=6e-17 NP_868891.1 best DB hits: BLAST: pir:S75593; hypothetical protein slr1340 - Synechocystis sp. (strain; E=3e-27 swissprot:P08457; STA_STRLA STREPTOTHRICIN ACETYLTRANSFERASE; E=2e-05 pir:JN0662; nourseothricin acetyltransferase (EC 2.3.1.-) -; E=3e-04 COG: slr1340; COG0454 Histone acetyltransferase HPA2 and related; E=3e-28 MTH1284; COG0456 Acetyltransferases; E=0.001 AF0521; COG0454 Histone acetyltransferase HPA2 and related; E=0.001 PFAM: PF00583; Acetyltransferase (GNAT) family; E=1.7e-20 NP_868892.1 best DB hits: BLAST: pir:C82978; conserved hypothetical protein PA5333 [imported] -; E=1e-12 pir:S74932; hypothetical protein slr0686 - Synechocystis sp. (strain; E=1e-08 COG: PA5333; COG3296 Uncharacterized BCR; E=1e-13 NP_868894.1 best DB hits: BLAST: gb:AAF79368.1; AC007887_27 (AC007887) F15O4.40 [Arabidopsis; E=0.77 NP_868896.1 best DB hits: BLAST: pir:H69181; hypothetical protein MTH616 - Methanobacterium; E=4e-31 pir:H69125; hypothetical protein MTH210 - Methanobacterium; E=2e-30 gb:AAF35993.1; AC005836_5 (AC005836) 26S Protease Regulatory; E=0.42 COG: MTH616; COG0606 Predicted ATPases; E=4e-32 PFAM: PF00004; ATPase associated with variou; E=0.039 NP_868897.1 best DB hits: PFAM: PF01040; UbiA prenyltransferase; E=0.14 NP_868898.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate NP_868901.1 best DB hits: BLAST: pir:S74476; ABC-type transport protein slr1113 - Synechocystis sp.; E=2e-46 pir:H71008; probable ATP-binding transport protein - Pyrococcus; E=2e-41 pir:E75122; hypothetical protein PAB1845 - Pyrococcus abyssi (strain; E=2e-40 COG: slr1113; COG1131 ABC-type multidrug transport system, ATPase; E=2e-47 ybhF; COG1131 ABC-type multidrug transport system, ATPase component; E=1e-33 TM1403; COG1131 ABC-type multidrug transport system, ATPase; E=2e-33 PFAM: PF00005; ABC transporter; E=5e-40 NP_868902.1 best DB hits: BLAST: pir:F81850; conserved hypothetical protein NMA1579 [imported] -; E=1e-66 pir:D81090; conserved hypothetical protein NMB1367 [imported] -; E=3e-66 pir:A82195; conserved hypothetical protein VC1488 [imported] -; E=1e-65 COG: NMB1367; COG1092 Predicted SAM-dependent methyltransferases; E=3e-67 NP_868905.1 best DB hits: BLAST: pir:G71008; hypothetical protein PH1365 - Pyrococcus horikoshii; E=0.58 pir:F75122; hypothetical protein PAB1844 - Pyrococcus abyssi (strain; E=0.72 NP_868906.1 best DB hits: BLAST: gb:AAF87925.1; AF163841_2 (AF163841) unknown [Myxococcus xanthus]; E=9e-51 swissprot:Q50722; YY03_MYCTU HYPOTHETICAL 57.9 KDA PROTEIN RV3403C; E=0.031 PFAM: PF00070; Pyridine nucleotide-disulphide oxid; E=4.7e-05 NP_868908.1 PMID: 8384293 best DB hits: BLAST: gb:AAB87745.1; (U89914) hypothetical 16.1 kDa transcriptional; E=8e-10 pir:G69867; transcriptional regulator MarR family homolog ykvE -; E=6e-06 pir:A82692; transcriptional regulator MarR family XF1354 [imported] -; E=1e-05 COG: BS_ykvE; COG1846 Transcriptional regulators; E=6e-07 PFAM: PF01047; MarR family; E=3.1e-20 NP_868909.1 PMID: 11549181 best DB hits: BLAST: gb:AAF82075.1; AF232751_3 (AF232751) unknown protein; E=1e-22 gb:AAB89642.1; (AE000991) conserved hypothetical protein; E=1e-10 gb:AAB89643.1; (AE000991) A. fulgidus predicted coding region; E=8e-05 COG: yeiH; COG2855 Uncharacterized membrane protein; E=2e-04 PFAM: PF00065; Neurotransmitter-gated ion-channel; E=0.36 NP_868911.1 best DB hits: BLAST: pir:G83613; probable acetyltransferase PA0249 [imported] -; E=7e-20 pir:S41381; hypothetical protein - Pseudomonas aeruginosa -----; E=5e-16 swissprot:P37664; YIAC_ECOLI HYPOTHETICAL 17.1 KDA PROTEIN IN; E=2e-13 COG: PA0249; COG0454 Histone acetyltransferase HPA2 and related; E=6e-21 Rv3420c; COG0456 Acetyltransferases; E=0.006 PFAM: PF00583; Acetyltransferase (GNAT) family; E=4.2e-21 NP_868912.1 best DB hits: BLAST: pir:B83343; hypothetical protein PA2418 [imported] - Pseudomonas; E=2e-88 embl:CAC08479.1; (AL392189) possible chromosome condensation; E=8e-42 pir:B83239; conserved hypothetical protein PA3240 [imported] -; E=2e-38 COG: PA2418; COG1741 Uncharacterized BCR; E=2e-89 PFAM: PF02678; Uncharacterized BCR, YhhW family COG; E=6.7e-09 NP_868915.1 PMID: 10336424 best DB hits: BLAST: gb:AAF04318.1; (AF065159) arylsulfatase [Bradyrhizobium; E=1e-59 gb:AAG58993.1; AE005611_3 (AE005611) arylsulfatase [Escherichia; E=5e-45 swissprot:P25549; ASLA_ECOLI ARYLSULFATASE (ARYL-SULFATE; E=5e-45 COG: aslA; COG3119 Arylsulfatase A and related enzymes; E=4e-46 yejM; COG3083 Predicted hydrolase of alkaline phosphatase; E=0.001 PFAM: PF00884; Sulfatase; E=5.8e-75 NP_868916.1 PMID: 1657871 best DB hits: BLAST: pir:H82493; MoxR-related protein VCA0175 [imported] - Vibrio; E=1e-87 pir:G83261; conserved hypothetical protein PA3070 [imported] -; E=2e-87 pir:H70121; methanol dehydrogenase regulator (moxR) homolog - Lyme; E=3e-69 COG: VCA0175; COG0714 MoxR-like ATPases; E=9e-89 PFAM: PF01078; Magnesium chelatase, subunit Chl; E=6.9e-08 NP_868917.1 best DB hits: BLAST: pir:H83261; hypothetical protein PA3071 [imported] - Pseudomonas; E=2e-35 pir:G82493; conserved hypothetical protein VCA0174 [imported] -; E=6e-30 pir:D83106; hypothetical protein PA4323 [imported] - Pseudomonas; E=1e-11 COG: PA3071; COG1721 Uncharacterized ACR; E=2e-36 PFAM: PF01882; Protein of unknown function DUF58; E=2.4e-18 NP_868919.1 best DB hits: BLAST: pir:E82493; conserved hypothetical protein VCA0172 [imported] -; E=7e-49 pir:B83262; hypothetical protein PA3073 [imported] - Pseudomonas; E=3e-44 gb:AAD30858.1; AF116251_1 (AF116251) BatA [Bacteroides fragilis]; E=6e-23 COG: VCA0172; COG3035 Uncharacterized BCR; E=7e-50 NP_868920.1 best DB hits: BLAST: pir:D82493; conserved hypothetical protein VCA0171 [imported] -; E=9e-11 pir:C83262; hypothetical protein PA3074 [imported] - Pseudomonas; E=4e-10 gb:AAD30859.1; AF116251_2 (AF116251) BatB [Bacteroides fragilis]; E=0.046 COG: VCA0171_1; COG3035 Uncharacterized BCR; E=2e-12 NP_868921.1 best DB hits: BLAST: pir:D82493; conserved hypothetical protein VCA0171 [imported] -; E=4e-12 pir:C83262; hypothetical protein PA3074 [imported] - Pseudomonas; E=9e-06 pir:S74853; hypothetical protein sll0837 - Synechocystis sp. (strain; E=0.059 COG: VCA0171_2; COG0457 TPR-repeat-containing proteins; E=2e-10 PFAM: PF00515; TPR Domain; E=1.3e-05 NP_868922.1 best DB hits: BLAST: pir:D83262; hypothetical protein PA3075 [imported] - Pseudomonas; E=1e-18 NP_868923.1 best DB hits: BLAST: pir:S77346; hypothetical protein slr1841 - Synechocystis sp. (strain; E=0.64 NP_868925.1 PMID: 1501644 best DB hits: BLAST: gb:AAF70456.1; AF221952_1 (AF221952) mu-protocadherin [Rattus; E=5e-08 gb:AAF45927.1; (AE003430) CG15570 gene product [Drosophila; E=3e-07 embl:CAC16087.1; (AJ289697) zona pellucida protein 1 [Gallus; E=5e-07 COG: VC1711; COG1032 Fe-S oxidoreductases family 2; E=6e-04 NP_868927.1 PMID: 12024217 NP_868928.1 best DB hits: BLAST: swissprot:P37684; YIAW_ECOLI HYPOTHETICAL 12.4 KD PROTEIN IN; E=0.006 swissprot:P32108; YIBI_ECOLI HYPOTHETICAL 13.9 KD PROTEIN IN; E=0.019 gb:AAG58742.1; AE005586_7 (AE005586) orf, hypothetical protein; E=0.019 NP_868929.1 best DB hits: BLAST: pir:H82507; conserved hypothetical protein VCA0047 [imported] -; E=1e-42 swissprot:P32107; YIBH_ECOLI HYPOTHETICAL 42.0 KD PROTEIN IN; E=2e-27 swissprot:P37683; YIAV_ECOLI HYPOTHETICAL 41.8 KD PROTEIN IN; E=2e-23 COG: VCA0047; COG1566 Multidrug resistance efflux pump; E=1e-43 ybhG; COG0845 Membrane-fusion protein; E=2e-08 PA1237; COG1566 Multidrug resistance efflux pump; E=5e-08 PFAM: PF00529; HlyD family secretion protein; E=3.2e-10 NP_868933.1 PMID: 10336424 best DB hits: BLAST: swissprot:P25549; ASLA_ECOLI ARYLSULFATASE (ARYL-SULFATE; E=4e-62 gb:AAG58993.1; AE005611_3 (AE005611) arylsulfatase [Escherichia; E=6e-62 gb:AAC32036.1; (M90498) arylsulfatase [Escherichia coli]; E=1e-54 COG: aslA; COG3119 Arylsulfatase A and related enzymes; E=4e-63 PFAM: PF00884; Sulfatase; E=3.6e-42 NP_868935.1 PMID: 9370333 PMID: 1663113 best DB hits: BLAST: gb:AAB60128.1; (U24202) cardiolipin synthase [Escherichia coli]; E=2e-68 swissprot:P31071; CLS_ECOLI CARDIOLIPIN SYNTHETASE (CARDIOLIPIN; E=4e-68 gb:AAB60144.1; (U24204) cardiolipin synthase [Escherichia coli]; E=7e-68 COG: cls; COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiol; E=3e-69 VC1670; COG1502; E=2e-64 PFAM: PF00614; Phospholipase D. Active site motif; E=0.016 NP_868936.1 PMID: http://us.expasy.org/cgi-bin/niceprot.pl?Q9WVR6 best DB hits: BLAST: pir:B69855; amino acid permease homolog ykbA - Bacillus subtilis; E=4e-13 swissprot:Q9WVR6; LAT2_RAT LARGE NEUTRAL AMINO ACIDS TRANSPORTER; E=2e-11 embl:CAB69072.1; (Y19022) LAT2 protein [Mus musculus]; E=3e-11 COG: BS_ykbA; COG0531 Amino acid transporters; E=4e-14 NP_868937.1 best DB hits: BLAST: pir:S76625; hypothetical protein - Synechocystis sp. (strain PCC; E=1e-13 pir:A83553; hypothetical protein PA0742 [imported] - Pseudomonas; E=3e-06 swissprot:P06549; LCTB_BACCA LCTB PROTEIN ----- pir: A25748; E=0.007 COG: PA0742; COG1226 Kef-type K+ transport systems, predicted NAD-binding; E=3e-07 NP_868939.1 PMID: 8196548 best DB hits: BLAST: pir:E83335; RND multidrug efflux membrane fusion protein MexE; E=9e-33 pir:T30829; hypothetical protein mexE - Pseudomonas aeruginosa; E=1e-31 embl:CAC14594.1; (AJ252200) membrane fusion protein; E=1e-21 COG: PA2493; COG0845 Membrane-fusion protein; E=9e-34 PFAM: PF00364; Biotin-requiring enzyme; E=0.31 PF00529; HlyD family secretion protein; E=5.5e-13 NP_868940.1 best DB hits: BLAST: pir:F83335; RND multidrug efflux transporter MexF PA2494 [imported] -; E=0.0 pir:T30830; hypothetical protein mexF - Pseudomonas aeruginosa -----; E=0.0 pir:T43024; ceoB protein - Burkholderia cepacia ----- gb:; E=0.0 COG: PA2494; COG0841 Cation/multidrug efflux pump; E=0.0 PFAM: PF00873; AcrB/AcrD/AcrF family; E=0 NP_868941.1 best DB hits: BLAST: embl:CAB83202.1; (AJ277117) membrane protein; E=6e-21 pir:S47693; hypothetical 38.5K protein (ftsy-nika intergenic region); E=2e-18 gb:AAG58583.1; AE005570_10 (AE005570) orf, hypothetical protein; E=3e-18 COG: yhhT; COG0628 Predicted permease; E=2e-19 PFAM: PF01594; Domain of unknown function DUF20; E=5e-05 NP_868943.1 best DB hits: BLAST: pir:F72424; hypothetical protein - Thermotoga maritima (strain MSB8); E=8e-27 gb:AAK03442.1; (AE006173) unknown [Pasteurella multocida]; E=8e-09 swissprot:P10478; XYNZ_CLOTM ENDO-1,4-BETA-XYLANASE Z PRECURSOR; E=1e-07 COG: TM0033; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; E=7e-28 PFAM: PF00561; alpha/beta hydrolase fold; E=0.033 PF01738; Dienelactone hydrolase; E=0.00013 PF02230; Phospholipase/Carboxylesterase; E=0.012 NP_868945.1 PMID: 8244397 PMID: 8325651 PMID: 20233298 best DB hits: BLAST: gb:AAA37880.1; (L07921) iduronate sulfatase [Mus musculus]; E=6e-34 gb:AAF30402.1; AF109924_1 (AF109924) sulfatase 1 precursor [Helix; E=9e-33 gb:AAF49287.1; (AE003522) CG7402 gene product [Drosophila; E=3e-31 COG: PA0031; COG3119 Arylsulfatase A and related enzymes; E=2e-28 PFAM: PF00884; Sulfatase; E=1.7e-25 NP_868946.1 PMID: 11823852 NP_868947.1 PMID: 9464374 best DB hits: BLAST: gb:AAD51849.1; AF178758_5 (AF178758) ArsA [Sinorhizobium sp. As4]; E=1e-162 swissprot:O50593; ARSA_ACIMU ARSENICAL PUMP-DRIVING ATPASE; E=1e-148 swissprot:P52145; ARA2_ECOLI ARSENICAL PUMP-DRIVING ATPASE; E=1e-147 COG: MJ1142; COG0003 Arsenite transporting ATPase; E=6e-22 PA1462; COG1192 ATPases involved in chromosome partitioning; E=4e-04 PFAM: PF01583; Adenylylsulfate kinase; E=0.42 PF00142; 4Fe-4S iron sulfur cluster bi; E=0.31 PF01695; IstB-like ATP binding protein; E=0.025 NP_868948.1 PMID: 9464374 best DB hits: BLAST: ddbj:BAA24821.1; (AB004659) ArsD [Acidiphilium multivorum]; E=7e-21 swissprot:P46003; ARD1_ECOLI ARSENICAL RESISTANCE OPERON; E=2e-20 gb:AAF89639.1; AF168737_2 (AF168737) ArsD [Klebsiella oxytoca]; E=3e-20 NP_868951.1 PMID: 9139909 best DB hits: BLAST: gb:AAC45219.1; (U87308) extracytoplasmic function alternative; E=7e-05 pir:H70507; probable sigE protein - Mycobacterium tuberculosis; E=1e-04 gb:AAC45221.1; (U87307) extracytoplasmic function alternative; E=4e-04 COG: Rv1221; COG1595 DNA-directed RNA polymerase specialized sigma; E=1e-05 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=3.2e-06 NP_868953.1 best DB hits: BLAST: embl:CAA96346.1; (Z71679) ORF YNR064c [Saccharomyces cerevisiae]; E=3e-59 embl:CAB56721.1; (AL121600) hydrolase [Streptomyces; E=1e-53 embl:CAB56691.1; (AL121596) hydrolase [Streptomyces; E=6e-30 COG: YNR064c; COG0596 Predicted hydrolases or acyltransferases; E=3e-60 Rv2296; COG0596 Predicted hydrolases or acyltransferases (alpha/beta; E=1e-15 BS_yugF; COG0596 Predicted hydrolases or acyltransferases; E=2e-15 PFAM: PF00561; alpha/beta hydrolase fold; E=7.1e-28 NP_868955.1 best DB hits: BLAST: pir:C82971; conserved hypothetical protein PA5395 [imported] -; E=1e-46 pir:S77029; hypothetical protein sll0781 - Synechocystis sp. (strain; E=1e-42 embl:CAC14336.1; (AL445945) conserved hypothetical protein; E=3e-36 NP_868956.1 PMID: 8007818 best DB hits: BLAST: gb:AAB31024.1; (S71704) Mip=24 kda macrophage infectivity; E=3e-32 pir:D83354; hypothetical protein PA2331 [imported] - Pseudomonas; E=8e-14 pir:B81134; macrophage infectivity potentiator-related protein; E=1e-13 COG: PA2331; COG2128 Uncharacterized ACR; E=7e-15 PA0565; COG0599 Uncharacterized ACR, homolog of; E=0.002 PFAM: PF02627; Carboxymuconolactone decarboxylase; E=1e-06 NP_868957.1 best DB hits: BLAST: swissprot:P71229; HYFR_ECOLI HYDROGENASE-4 TRANSCRIPTIONAL; E=1e-83 pir:B65025; hypothetical protein b2491 - Escherichia coli (strain; E=1e-83 ddbj:BAA16380.1; (D90878) FORMATE HYDROGENLYASE TRANSCRIPTIONAL; E=1e-83 COG: hyfR_2; COG1221 NtrC family transcriptional regulators, ATPase; E=2e-77 hydG; COG2204 AAA superfamily ATPases with N-terminal receiver; E=4e-66 aq_1792_2; COG1221 NtrC family transcriptional regulators, ATPase; E=8e-66 PFAM: PF01590; GAF domain; E=9.9e-11 PF00158; Sigma-54 interaction domain; E=2.1e-138 NP_868958.1 PMID: 7574579 best DB hits: BLAST: pir:F75417; L-sorbosone dehydrogenase - Deinococcus radiodurans; E=8e-06 swissprot:Q44091; SNDH_ACELI L-SORBOSONE DEHYDROGENASE (SNDH); E=0.20 COG: DR1257; COG2133 Glucose/sorbosone dehydrogenases; E=8e-07 PFAM: PF01436; NHL repeat; E=0.028 NP_868959.1 best DB hits: BLAST: swissprot:Q9X248; FABG_THEMA 3-OXOACYL-[ACYL-CARRIER PROTEIN]; E=7e-33 pir:E81695; 3-oxoacyl-(acyl carrier protein) reductase TC0508; E=3e-29 swissprot:P38004; FABG_CHLTR 3-OXOACYL-[ACYL-CARRIER PROTEIN]; E=2e-28 COG: TM1724; COG1028 Dehydrogenases with different specificities (related; E=7e-34 CPn0296; COG1028 Dehydrogenases with different specificities; E=3e-28 BH2491; COG1028 Dehydrogenases with different specificities (related; E=4e-27 PFAM: PF00106; short chain dehydrogenase; E=3.1e-58 PF00678; Short chain dehydrogenase/reduct; E=3.5e-06 NP_868962.1 best DB hits: BLAST: swissprot:P37486; YYBR_BACSU HYPOTHETICAL 14.7 KDA PROTEIN IN; E=3e-25 ddbj:BAA19363.1; (AB001488) FUNCTION UNKNOWN, SIMILAR PRODUCT IN; E=3e-25 swissprot:P96673; YDEP_BACSU HYPOTHETICAL 15.2 KDA PROTEIN IN; E=3e-25 COG: BS_yybR; COG1733 Predicted transcriptional regulators; E=3e-26 PFAM: PF01638; Protein of unknown function DUF24; E=1.9e-44 NP_868963.1 best DB hits: BLAST: embl:CAA04767.1; (AJ001445) ripening-induced protein [Fragaria; E=6e-31 pir:T10824; auxin-induced protein (clone MII-3) - mung bean -----; E=3e-29 swissprot:Q9ZUC1; QORL_ARATH QUINONE OXIDOREDUCTASE-LIKE PROTEIN; E=9e-27 COG: PA1137; COG0604 NADPH:quinone reductase and related Zn-dependent; E=2e-24 PA5427; COG1064 Zn-dependent alcohol dehydrogenases; E=4e-10 VNG1821G; COG0604 NADPH:quinone reductase and related Zn-dependent; E=5e-10 PFAM: PF00107; Zinc-binding dehydrogenases; E=2.8e-68 NP_868964.1 best DB hits: BLAST: pir:E83496; hypothetical protein PA1186 [imported] - Pseudomonas; E=8e-50 embl:CAB76875.1; (AL159139) hypothetical protein SCL6.10; E=2e-12 swissprot:P71557; Y953_MYCTU HYPOTHETICAL 30.9 KDA PROTEIN RV0953C; E=7e-08 COG: PA1186; COG2141 Coenzyme F420-dependent N5,N10-methylene; E=8e-51 PFAM: PF00296; Bacterial luciferase; E=0.86 NP_868965.1 best DB hits: BLAST: ddbj:BAB03618.1; (AP002522) contains ESTs; E=3e-20 pir:S42651; hypothetical protein - rape ----- embl: CAB58175.1; E=1e-19 pir:T02520; hypothetical protein F13M22.4 - Arabidopsis thaliana; E=2e-18 COG: Rv0068; COG1028 Dehydrogenases with different specificities (related; E=8e-17 VNG0479G; COG1028 Dehydrogenases with different specificities; E=1e-15 XF2716; COG1028 Dehydrogenases with different specificities (related; E=1e-15 PFAM: PF00106; short chain dehydrogenase; E=4.1e-22 NP_868966.1 PMID: 11932238 NP_868967.1 best DB hits: BLAST: embl:CAB62700.1; (AL133422) hypothetical protein SCM1.42c; E=7e-34 gb:AAF12648.1; AE001826_117 (AE001826) hypothetical protein; E=4e-33 NP_868968.1 best DB hits: BLAST: pir:T36867; hypothetical protein SCI51.04 - Streptomyces coelicolor; E=3e-50 pir:T36868; hypothetical protein SCI51.05c - Streptomyces coelicolor; E=7e-07 pir:D83072; conserved hypothetical protein PA4584 [imported] -; E=2e-05 NP_868969.1 best DB hits: BLAST: pir:T36868; hypothetical protein SCI51.05c - Streptomyces coelicolor; E=6e-54 swissprot:Q60312; Y002_METJA HYPOTHETICAL PROTEIN MJ0002 -----; E=1e-13 pir:T36867; hypothetical protein SCI51.04 - Streptomyces coelicolor; E=9e-07 NP_868970.1 PMID: 7522196 best DB hits: BLAST: swissprot:P35824; SLAP_BACCI S-LAYER RELATED PROTEIN PRECURSOR; E=4e-04 PFAM: PF02368; Bacterial Ig-like domain (group 2; E=0.013 NP_868973.1 best DB hits: BLAST: pir:A75582; serine proteinase, subtilase - Deinococcus; E=0.064 COG: DRA0283; COG1404 Subtilisin-like serine proteases; E=0.006 NP_868974.1 PMID: 7557402 best DB hits: BLAST: swissprot:Q00808; HET1_PODAN VEGETATIBLE INCOMPATIBILITY PROTEIN; E=3e-21 pir:T41075; hypothetical WD-repeat protein - fission yeast; E=9e-17 embl:CAA04998.1; (AJ001774) vanadium chloroperoxidase [Anabaena; E=2e-16 COG: YCR084c; COG2319 WD40 repeat protein; E=9e-14 PFAM: PF00400; WD domain, G-beta repeat; E=0.058 NP_868975.1 PMID: 8335689 best DB hits: BLAST: embl:CAA84826.1; (Z35768) ORF YBL007c [Saccharomyces cerevisiae]; E=0.67 NP_868976.1 best DB hits: BLAST: pir:F70974; probable acrA1 protein - Mycobacterium tuberculosis; E=4e-15 gb:AAG31130.1; AF299336_7 (AF299336) MxcG [Stigmatella aurantiaca]; E=6e-12 pir:T37054; hypothetical protein SCJ21.05 - Streptomyces coelicolor; E=7e-10 COG: Rv3391_1; COG0451 Nucleoside-diphosphate-sugar epimerases; E=4e-16 PA4078_2; COG3320 Epimerase domains of multifunctional non-ribosomal; E=2e-04 PFAM: PF01073; 3-beta hydroxysteroid dehydro; E=0.7 NP_868977.1 best DB hits: BLAST: pir:C81187; ABC transporter ATP-binding protein NMB0549 [imported]; E=3e-97 pir:C81916; probable ABC transporter ATP-binding protein NMA0729; E=8e-96 gb:AAG55261.1; AE005269_5 (AE005269) ATP-binding; E=7e-94 COG: BS_yknY; COG1136 ABC-type (unclassified) transport system, ATPase; E=1e-56 NMB0549_2; COG0577 Predicted permease; E=5e-46 PFAM: PF00735; Cell division protein; E=0.7 PF00005; ABC transporter; E=3e-64 PF02687; Predicted permease; E=0.2 NP_868978.1 PMID: 8231810 best DB hits: BLAST: swissprot:P33951; SYRD_PSESY ATP-BINDING PROTEIN SYRD -----; E=8e-65 pir:G83345; pyoverdine biosynthesis protein PvdE PA2397 [imported] -; E=8e-65 pir:S54001; pyoverdine synthetase E - Pseudomonas aeruginosa -----; E=9e-64 COG: PA2397; COG1132 ABC-type multidrug/protein/lipid transport system,; E=8e-66 APE1253; COG1136 ABC-type (unclassified) transport system, ATPase; E=2e-09 XF1081; COG1132 ABC-type multidrug/protein/lipid transport system,; E=2e-07 PFAM: PF00664; ABC transporter transmembrane; E=0.25 PF00470; RecF protein; E=0.13 PF02223; Thymidylate kinase; E=0.0054 NP_868980.1 best DB hits: BLAST: swissprot:Q10323; YD6B_SCHPO HYPOTHETICAL 42.2 KD PROTEIN; E=1e-28 pir:T38533; similar to S. cerevisiae sur1 protein - fission yeast; E=4e-27 gb:AAB68308.1; (U39205) Sur1p [Saccharomyces cerevisiae]; E=8e-26 NP_868981.1 PMID: 8162191 PMID: 7536735 best DB hits: BLAST: pir:I76776; Mannosyltransferase (EC 5.-.-.-) B - Escherichia coli; E=2e-26 gb:AAF04384.1; AF189151_7 (AF189151) WbdB; mannosyl transferase B; E=2e-26 gb:AAC38771.1; (AF010182) glycosyltransferase WbpY [Pseudomonas; E=3e-21 COG: PA5448; COG0438 Predicted glycosyltransferases; E=3e-22 PFAM: PF00534; Glycosyl transferases group 1; E=2.1e-24 NP_868984.1 best DB hits: BLAST: embl:CAA69119.1; (Y07786) sugar transferase [Vibrio cholerae]; E=3e-13 ddbj:BAA33603.1; (AB012956) probable glycosyl transferase [Vibrio; E=3e-13 pir:T44330; glycosyl transferase homolog [imported] - Vibrio; E=3e-12 COG: BH3661; COG0463 Glycosyltransferases involved in cell wall; E=7e-13 RP339; COG0463 Glycosyltransferases involved in cell wall biogenesis; E=5e-10 HI0868; COG0463 Glycosyltransferases involved in cell wall; E=4e-09 PFAM: PF00535; Glycosyl transferase; E=1.9e-44 NP_868988.1 best DB hits: BLAST: pir:S74764; hypothetical protein slr1063 - Synechocystis sp. (strain; E=2e-10 gb:AAB91182.1; (AE001103) mannosyltransferase A (mtfA); E=3e-10 pir:S77338; LPS glycosyltransferase icsA - Synechocystis sp. (strain; E=0.004 COG: AF0045; COG0438 Predicted glycosyltransferases; E=3e-11 PFAM: PF00534; Glycosyl transferases group 1; E=9.2e-10 NP_868989.1 PMID: 9106218 best DB hits: BLAST: gb:AAB61353.1; (U36390) delta-9 desaturase [Synechococcus sp. PCC; E=2e-39 pir:S75765; stearoyl-CoA desaturase (EC 1.14.99.5) 1 - Synechocystis; E=1e-36 pir:S57643; stearoyl-CoA desaturase (EC 1.14.99.5) - Synechococcus; E=2e-36 COG: sll0541; COG1398 Fatty-acid desaturase; E=1e-37 PFAM: PF01069; Fatty acid desaturase; E=7.5e-32 NP_868990.1 best DB hits: BLAST: gb:AAF15891.2; AF204805_1 (AF204805) NosA [Nostoc sp. GSV224]; E=0.19 PFAM: PF00668; Condensation domain; E=0.00055 NP_868992.1 best DB hits: BLAST: pir:B75096; glycosyl transferase PAB0772 - Pyrococcus abyssi (strain; E=8e-23 gb:AAC44786.1; (U70729) MigA [Pseudomonas aeruginosa]; E=2e-22 pir:B83557; probable glycosyl transferase PA0705 [imported] -; E=2e-22 COG: PAB0772; COG0463 Glycosyltransferases involved in cell wall; E=7e-24 RP339; COG0463 Glycosyltransferases involved in cell wall biogenesis; E=2e-17 PA5000; COG0463 Glycosyltransferases involved in cell wall; E=3e-17 PFAM: PF00535; Glycosyl transferase; E=3.7e-41 NP_868993.1 best DB hits: BLAST: embl:CAC11705.1; (AL445064) hypothetical protein [Thermoplasma; E=5e-14 pir:S75560; ceramide glucosyltransferase - Synechocystis sp. (strain; E=2e-11 ddbj:BAA09451.1; (D50840) ceramide glucosyltransferase [Homo; E=0.004 COG: Ta0565; COG1215 Glycosyltransferases, probably involved in cell wall; E=5e-15 slr0813; COG1215 Glycosyltransferases, probably involved in cell; E=2e-12 PFAM: PF00535; Glycosyl transferase; E=0.014 NP_868996.1 best DB hits: BLAST: gb:AAK03081.1; (AE006139) unknown [Pasteurella multocida]; E=8e-11 gb:AAG55260.1; AE005269_4 (AE005269) membrane protein; E=5e-10 pir:F64826; probable membrane protein b0878 - Escherichia coli; E=1e-09 COG: ybjY; COG0845 Membrane-fusion protein; E=1e-10 VC1410; COG1566 Multidrug resistance efflux pump; E=6e-06 NMB0548; COG0845 Membrane-fusion protein; E=1e-05 PFAM: PF00529; HlyD family secretion protein; E=7.9e-05 NP_868997.1 PMID: 11222613 best DB hits: BLAST: gb:AAF87592.1; AF286062_5 (AF286062) AprF [Pseudomonas; E=0.29 gb:AAF01330.1; (AF188365) outer membrane protein [Pseudomonas; E=0.64 PFAM: PF02321; Outer membrane efflux protein; E=2.3e-05 NP_868998.1 best DB hits: BLAST: embl:CAC11705.1; (AL445064) hypothetical protein [Thermoplasma; E=9e-09 pir:S75560; ceramide glucosyltransferase - Synechocystis sp. (strain; E=3e-08 ddbj:BAA09451.1; (D50840) ceramide glucosyltransferase [Homo; E=7e-05 COG: Ta0565; COG1215 Glycosyltransferases, probably involved in cell wall; E=8e-10 slr0813; COG1215 Glycosyltransferases, probably involved in cell; E=3e-09 sll1004; COG0463 Glycosyltransferases involved in cell wall; E=4e-05 PFAM: PF00535; Glycosyl transferase; E=2e-07 NP_868999.1 PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=5e-38 embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=4e-37 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=4e-37 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=6e-29 TM1703; COG1368 Phosphoglycerol transferase and related proteins,; E=2e-04 VNG1337C; COG3119 Arylsulfatase A and related enzymes; E=8e-04 PFAM: PF00884; Sulfatase; E=5.7e-53 NP_869000.1 PMID: 97078679 PMID: 8662838 PMID: 10464298 PMID: 8918804 best DB hits: BLAST: embl:CAA67214.1; (X98625) sialic acid-specific 9-O-acetylesterase; E=3e-37 gb:AAB07813.1; (U40408) sialic-acid O-acetylesterase [Mus; E=6e-37 pir:T46250; hypothetical protein DKFZp761A051.1 - human (fragment); E=1e-34 NP_869002.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate NP_869003.1 PMID: 10074080 best DB hits: BLAST: swissprot:O52594; ACKA_CLOTM ACETATE KINASE (ACETOKINASE) -----; E=7e-71 swissprot:Q9WYB1; ACKA_THEMA ACETATE KINASE (ACETOKINASE) -----; E=2e-68 swissprot:P38502; ACKA_METTE ACETATE KINASE (ACETOKINASE) -----; E=5e-66 COG: TM0274; COG0282 Acetate kinase; E=2e-69 PFAM: PF00871; Acetokinase; E=3.3e-06 NP_869004.1 best DB hits: BLAST: embl:CAC18708.1; (AL451182) aldoketoreductase; E=9e-18 embl:CAA74709.1; (Y14332) dTDP-4-keto-L-6-deoxy-hexose; E=6e-17 ddbj:BAB04730.1; (AP001510) oxidoreductase [Bacillus halodurans]; E=2e-15 COG: BH1011; COG0667 Predicted oxidoreductases (related to aryl-alcohol; E=2e-16 Ta0027; COG0656 Aldo/keto reductases, related to diketogulonate; E=3e-12 BS_iolS; COG0667 Predicted oxidoreductases (related to aryl-alcohol; E=4e-12 PFAM: PF00248; Aldo/keto reductase; E=1.6e-13 NP_869005.1 best DB hits: BLAST: pir:D82155; hypothetical protein VC1816 [imported] - Vibrio cholerae; E=1e-16 ddbj:BAA89380.1; (AB025342) ORF6 [Moritella marina]; E=2e-15 pir:G75556; hypothetical protein - Deinococcus radiodurans (strain; E=2e-13 COG: DR0127; COG0666 Ankyrin repeat proteins; E=2e-14 NP_869006.1 best DB hits: BLAST: gb:AAG58178.1; AE005533_11 (AE005533) orf, hypothetical protein; E=1e-59 swissprot:P24197; YGID_ECOLI HYPOTHETICAL 29.9 KD PROTEIN IN; E=6e-59 pir:S22362; hypothetical protein C - Escherichia coli ----- gb:; E=1e-54 COG: ygiD; COG3384 Uncharacterized protein; E=6e-60 NP_869007.1 best DB hits: BLAST: ddbj:BAB05804.1; (AP001514) BH2085~unknown [Bacillus halodurans]; E=5e-19 NP_869008.1 best DB hits: BLAST: pir:T35901; probable araC family transcriptional regulator -; E=1e-17 swissprot:Q03320; ARAL_STRAT ARAC-LIKE TRANSCRIPTION; E=2e-16 swissprot:P35319; ARAL_STRLI ARAC-LIKE TRANSCRIPTION; E=2e-15 COG: ykgD; COG2207 AraC-type DNA-binding domain-containing proteins; E=2e-12 VCA1018_1; COG2169 Adenosine deaminase; E=3e-05 VCA1074; COG2207 AraC-type DNA-binding domain-containing proteins; E=3e-05 PFAM: PF00440; Bacterial regulatory proteins, tetR; E=0.37 PF00165; Bacterial regulatory helix-turn-heli; E=3.5e-25 PF01047; MarR family; E=0.25 NP_869009.1 PMID: 8830057 best DB hits: BLAST: gb:AAD05198.1; (U43163) inter-alpha-trypsin inhibitor family; E=3e-24 ddbj:BAA07602.1; (D38595) inter-alpha-trypsin inhibitor family; E=4e-24 ddbj:BAA07536.1; (D38535) PK-120 precursor [Homo sapiens]; E=8e-24 COG: sll0103; COG2304 Protein containing von Willebrand factor (vWF) type; E=1e-04 PFAM: PF02138; Beige/BEACH domain; E=0.089 PF00092; von Willebrand factor type A domain; E=0.084 NP_869010.1 best DB hits: PFAM: PF01694; Rhomboid family; E=0.038 NP_869013.1 best DB hits: BLAST: pir:E81971; hypothetical protein NMA0532 [imported] - Neisseria; E=0.079 pir:G81862; conserved hypothetical protein NMA1675 [imported] -; E=0.079 pir:F81882; hypothetical protein NMA1155 [imported] - Neisseria; E=0.17 NP_869015.1 catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue NP_869017.1 best DB hits: BLAST: gb:AAG54525.1; AE005198_6 (AE005198) Z0256 gene product; E=2e-16 pir:D83634; hypothetical protein PA0079 [imported] - Pseudomonas; E=3e-16 pir:E82499; hypothetical protein VCA0114 [imported] - Vibrio; E=2e-14 NP_869018.1 best DB hits: BLAST: pir:F83350; hypothetical protein PA2362 [imported] - Pseudomonas; E=3e-05 pir:G83437; hypothetical protein PA1668 [imported] - Pseudomonas; E=0.006 NP_869019.1 best DB hits: BLAST: embl:CAC05884.1; (AL391754) penicillin-binding protein; E=0.22 NP_869020.1 best DB hits: BLAST: pir:G83634; hypothetical protein PA0082 [imported] - Pseudomonas; E=1e-34 pir:D83350; hypothetical protein PA2360 [imported] - Pseudomonas; E=3e-10 NP_869021.1 best DB hits: BLAST: pir:H83634; conserved hypothetical protein PA0083 [imported] -; E=2e-54 gb:AAB92577.1; (AF037441) 19.5 kDa protein [Edwardsiella; E=7e-29 pir:A83351; conserved hypothetical protein PA2365 [imported] -; E=8e-28 NP_869022.1 best DB hits: BLAST: pir:A83635; conserved hypothetical protein PA0084 [imported] -; E=0.0 gb:AAB92576.1; (AF037441) 54.5 kDa protein [Edwardsiella; E=1e-110 pir:B83351; conserved hypothetical protein PA2366 [imported] -; E=1e-109 NP_869023.1 best DB hits: BLAST: pir:A83349; hypothetical protein PA2367 [imported] - Pseudomonas; E=9e-13 gb:AAB92575.1; (AF037441) 17.8 kDa protein [Edwardsiella; E=0.006 COG: PA2367; COG3157 Hemolysin-coregulated protein (uncharacterized); E=9e-14 NP_869024.1 best DB hits: BLAST: pir:D83635; hypothetical protein PA0087 [imported] - Pseudomonas; E=6e-06 gb:AAB92574.1; (AF037441) 18.8 kDa protein [Edwardsiella; E=1e-04 NP_869025.1 best DB hits: BLAST: pir:E83635; hypothetical protein PA0088 [imported] - Pseudomonas; E=1e-139 pir:C83349; hypothetical protein PA2369 [imported] - Pseudomonas; E=2e-61 pir:A82499; hypothetical protein VCA0110 [imported] - Vibrio; E=3e-40 NP_869026.1 best DB hits: BLAST: pir:F83635; hypothetical protein PA0089 [imported] - Pseudomonas; E=4e-31 pir:D83349; hypothetical protein PA2370 [imported] - Pseudomonas; E=1e-05 gb:AAG54528.1; AE005198_9 (AE005198) Z0259 gene product; E=0.001 NP_869027.1 best DB hits: BLAST: pir:H83635; conserved hypothetical protein PA0091 [imported] -; E=1e-104 pir:D83633; conserved hypothetical protein PA0095 [imported] -; E=1e-101 pir:G83310; conserved hypothetical protein PA2685 [imported] -; E=5e-97 NP_869029.1 best DB hits: BLAST: pir:H83542; hypothetical protein PA0824 [imported] - Pseudomonas; E=0.042 pir:F82478; hypothetical protein VCA0284 [imported] - Vibrio; E=0.18 gb:AAG54900.1; AE005236_1 (AE005236) Z0705 gene product; E=0.36 NP_869032.1 best DB hits: PFAM: PF02869; Eukaryotic initiation factor 5A hypu; E=0.64 PF00092; von Willebrand factor type A domain; E=0.00092 NP_869033.1 best DB hits: BLAST: pir:T36423; probable large, multifunctional secreted protein -; E=8e-23 embl:CAB45032.1; (AL078635) large multi-functional protein; E=2e-22 pir:C75617; probable oxidoreductase - Deinococcus radiodurans; E=0.40 PFAM: PF01436; NHL repeat; E=0.1 NP_869036.1 best DB hits: BLAST: swissprot:O67293; YC50_AQUAE HYPOTHETICAL PROTEIN AQ_1250 -----; E=2e-09 swissprot:Q9Z729; Y877_CHLPN HYPOTHETICAL PROTEIN CPN0877CP0992; E=2e-07 swissprot:O26373; Y273_METTH HYPOTHETICAL PROTEIN MTH273 -----; E=4e-07 COG: aq_1250; COG1881 Phospholipid-binding protein; E=2e-10 NP_869039.1 PMID: 8052622 best DB hits: BLAST: swissprot:P46358; RFAY_XANCP PROBABLE RNA POLYMERASE SIGMA FACTOR; E=5e-05 swissprot:P37978; CNRH_ALCEU RNA POLYMERASE SIGMA FACTOR CNRH; E=9e-04 pir:C69826; RNA polymerase ECF-type sigma factor homolog yhdM -; E=0.001 COG: BS_yhdM; COG1595 DNA-directed RNA polymerase specialized sigma; E=1e-04 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=4.8e-07 NP_869041.1 best DB hits: BLAST: pir:B82698; gluconolactonase precursor XF1297 [imported] - Xylella; E=4e-05 embl:CAB59581.1; (AL132662) possible gluconolactonase precursor; E=0.028 pir:B83340; hypothetical protein PA2451 [imported] - Pseudomonas; E=0.036 COG: XF1297; COG3386 Uncharacterized protein; E=4e-06 PA2451; COG2382 Enterochelin esterase and related enzymes; E=0.003 NP_869048.1 best DB hits: BLAST: ddbj:BAB06223.1; (AP001515) serinethreonine protein kinase; E=1e-33 swissprot:P71584; PKNB_MYCTU SERINETHREONINE-PROTEIN; E=1e-32 pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=1e-32 COG: BH2504_1; COG0515 Serine/threonine protein kinases; E=1e-34 PFAM: PF00069; Protein kinase domain; E=2.6e-53 NP_869050.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors NP_869053.1 PMID: 7910580 PMID: 1572648 best DB hits: BLAST: pdb:1E2S; P Chain P, Crystal Structure Of An Arylsulfatase A; E=5e-34 pdb:1AUK; Human Arylsulfatase A; E=6e-34 embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=7e-34 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=9e-32 TM1703; COG1368 Phosphoglycerol transferase and related proteins,; E=0.008 PFAM: PF00884; Sulfatase; E=4.8e-55 NP_869057.1 PMID: 11544236 best DB hits: BLAST: gb:AAK02042.1; AF261825_11 (AF261825) hypothetical protein; E=2e-97 PFAM: PF02662; Methyl-viologen-reducing hydrogenase; E=0.091 NP_869058.1 PMID: 11544236 best DB hits: BLAST: gb:AAK02043.1; AF261825_12 (AF261825) ATPase [Salmonella; E=3e-67 swissprot:P55530; Y4KL_RHISN HYPOTHETICAL 37.6 KD AAA-FAMILY; E=2e-41 gb:AAA64864.1; (U23723) orf300 [Escherichia coli]; E=9e-32 COG: HP1069; COG0465 ATP-dependent Zn proteases; E=4e-24 AF0477; COG0464 ATPases of the AAA+ class; E=3e-23 Cj1116c; COG0465 ATP-dependent Zn proteases; E=5e-22 PFAM: PF00406; Adenylate kinase; E=0.57 PF00071; Ras family; E=0.09 PF01202; Shikimate kinase; E=0.028 NP_869061.1 best DB hits: BLAST: pir:F83457; hypothetical protein PA1506 [imported] - Pseudomonas; E=9e-13 COG: PA1506; COG0394 Protein-tyrosine-phosphatase; E=9e-14 PFAM: PF01451; Low molecular weight phosphotyrosine; E=0.00019 NP_869062.1 best DB hits: BLAST: embl:CAB76298.1; (AL158057) hypothetical protein SC10G8.25c.; E=8e-33 pir:A82207; conserved hypothetical protein VC1377 [imported] -; E=2e-12 pir:E83447; hypothetical protein PA1575 [imported] - Pseudomonas; E=5e-10 PFAM: PF00929; Exonuclease; E=1.8e-09 NP_869063.1 PMID: 11759840 NP_869071.1 PMID: 2307677 best DB hits: BLAST: swissprot:P32084; YHIT_SYNP7 HYPOTHETICAL 12.4 KD HIT-LIKE PROTEIN; E=5e-34 pir:A35350; protein kinase C inhibitor - bovine; E=8e-34 gb:AAA18398.1; (U09407) protein kinase C inhibitor; E=8e-34 COG: slr1234; COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and; E=6e-33 ycfF; COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other; E=9e-26 XF1810; COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and; E=1e-21 PFAM: PF01230; HIT family; E=6e-59 NP_869072.1 PMID: 1741263 best DB hits: BLAST: ddbj:BAB06751.1; (AP001517) DNA repair protein [Bacillus; E=6e-32 swissprot:Q02170; RADC_BACSU DNA REPAIR PROTEIN RADC HOMOLOG; E=9e-32 swissprot:Q9X1P3; RADC_THEMA DNA REPAIR PROTEIN RADC HOMOLOG; E=1e-30 COG: BH3032; COG2003 DNA repair proteins; E=5e-33 NP_869075.1 PMID: 7590157 PMID: 9733647 best DB hits: BLAST: swissprot:Q10960; GLNB_MYCTU NITROGEN REGULATORY PROTEIN P-II; E=5e-16 swissprot:O30794; GLNB_NOSPU NITROGEN REGULATORY PROTEIN P-II (PII; E=4e-15 swissprot:P80016; GLNB_SYNP7 NITROGEN REGULATORY PROTEIN P-II (PII; E=5e-15 COG: Rv2919c; COG0347 Nitrogen regulatory protein PII; E=5e-17 PFAM: PF00543; Nitrogen regulatory protein P-II; E=1.2e-10 NP_869076.1 best DB hits: BLAST: swissprot:O67716; DHAS_AQUAE ASPARTATE-SEMIALDEHYDE DEHYDROGENASE; E=1e-78 swissprot:Q04797; DHAS_BACSU ASPARTATE-SEMIALDEHYDE DEHYDROGENASE; E=4e-78 pir:D46665; aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) -; E=9e-78 COG: aq_1866; COG0136 Aspartate-semialdehyde dehydrogenase; E=1e-79 PFAM: PF01118; Semialdehyde dehydrogenase, N; E=9.5e-36 PF02774; Semialdehyde dehydrogenase, d; E=5.2e-65 NP_869081.1 PMID: 8426613 best DB hits: BLAST: gb:AAA70381.1; (L05069) circumsporozoite protein [Plasmodium; E=0.15 pir:A41156; circumsporozoite protein - Plasmodium vivax (isolate; E=0.35 embl:CAB58111.1; (AL121806) prediction=(method:''genefinder'',; E=0.48 NP_869083.1 PMID: 9457884 best DB hits: BLAST: pir:S75721; hypothetical protein slr0904 - Synechocystis sp. (strain; E=1e-117 pir:G72368; comM protein - Thermotoga maritima (strain MSB8) -----; E=1e-113 pir:C75370; Mg(2+) chelatase - Deinococcus; E=1e-111 COG: slr0904; COG0606 Predicted ATPases; E=1e-118 BH3051; COG1067 Predicted ATP-dependent protease; ATPase domain; E=7e-06 MTH556; COG1239 Mg-chelatase subunit ChlI; E=5e-04 PFAM: PF01078; Magnesium chelatase, subunit; E=1.2e-10 PF01202; Shikimate kinase; E=0.29 PF01695; IstB-like ATP binding protein; E=0.57 NP_869085.1 best DB hits: BLAST: gb:AAD38020.1; AF148127_1 (AF148127) transposase [Porphyromonas; E=2e-13 ddbj:BAA83477.1; (AB009361) transposase [Porphyromonas; E=3e-13 ddbj:BAA92234.1; (AB031551) transposase [Bacillus subtilis]; E=4e-10 COG: BH0691; COG3385 Predicted transposase; E=4e-10 PFAM: PF01609; Transposase (IS4 family); E=6.2e-08 NP_869087.1 best DB hits: BLAST: pir:T00198; vp80 protein - Leucania separata nuclear polyhedrosis; E=0.39 NP_869089.1 best DB hits: BLAST: pir:B82065; conserved hypothetical protein VC2524 [imported] -; E=9e-28 embl:CAC12689.1; (AJ272115) hypothetical protein [Thauera; E=6e-26 pir:B83087; conserved hypothetical protein PA4458 [imported] -; E=7e-26 COG: VC2524; COG1778 Uncharacterized proteins of HAD superfamily,; E=8e-29 APE0766; COG0561 Predicted hydrolases of the HAD superfamily; E=6e-05 NP_869090.1 best DB hits: BLAST: swissprot:O67500; YF46_AQUAE HYPOTHETICAL PROTEIN AQ_1546 -----; E=3e-47 swissprot:P45313; YRBH_HAEIN HYPOTHETICAL PROTEIN HI1678 -----; E=2e-46 gb:AAK02609.1; (AE006087) KpsF [Pasteurella multocida]; E=3e-43 COG: aq_1546_1; COG0794 Predicted sugar phosphate isomerase involved in; E=7e-37 APE1838; COG0517 CBS domains; E=2e-08 PFAM: PF01380; SIS domain; E=1.1e-28 PF00571; CBS domain; E=0.059 NP_869091.1 best DB hits: BLAST: pir:G83105; hypothetical protein PA4318 [imported] - Pseudomonas; E=2e-12 ddbj:BAB04453.1; (AP001509) BH0734~unknown conserved protein; E=3e-04 pir:S74573; hypothetical protein slr0254 - Synechocystis sp. (strain; E=4e-04 COG: PA4318; COG1714 Uncharacterized membrane protein/domain; E=2e-13 NP_869092.1 best DB hits: BLAST: gb:AAK02765.1; (AE006104) unknown [Pasteurella multocida]; E=0.006 gb:AAD41078.1; AF141204_1 (AF141204) Nramp2 [Arabidopsis thaliana]; E=0.014 gb:AAG52643.1; AC079677_7 (AC079677) stress response protein; E=0.014 COG: NMB1426; COG1914 Mn2+ and Fe2+ transporters of the NRAMP family; E=0.002 BS_ycsG; COG0591 Na+/proline, Na+/panthothenate symporters and; E=0.008 NP_869094.1 best DB hits: BLAST: pir:E71082; probable phospho-sugar mutase 2 - Pyrococcus horikoshii; E=1e-60 pir:H75104; phosphomannomutase (pmm) PAB0819 - Pyrococcus abyssi; E=7e-58 gb:AAB90779.1; (AE001073) phosphomannomutase (pmm) [Archaeoglobus; E=5e-53 COG: PH0923; COG1109 Phosphomannomutase; E=1e-61 PFAM: PF02878; Phosphoglucomutase/phosphomannomu; E=4.1e-29 PF02879; Phosphoglucomutase/phosphomannomu; E=1.2e-15 PF02880; Phosphoglucomutase/phosphomannomu; E=0.00028 NP_869095.1 PMID: 9651254 PMID: 10215859 PMID: 10848995 PMID: 11073907 best DB hits: BLAST: gb:AAG32950.1; (AF032114) formylmethanofuran; E=6e-98 pir:S57456; formylmethanofuran dehydrogenase (EC 1.2.99.5); E=8e-72 pir:G69074; formylmethanofuran dehydrogenase (EC 1.2.99.5); E=3e-71 COG: MTH1557; COG1229 Formylmethanofuran dehydrogenase subunit A; E=3e-72 PFAM: PF02612; N-acetylglucosamine-6-phosphat; E=0.0077 NP_869096.1 catalyzes the transfer of a formyl group from formylmethanofuran to tetrahydromethanopterin tetrahydromethanopterin NP_869097.1 PMID: 8575452 best DB hits: BLAST: gb:AAB89324.1; (AE000970) tungsten formylmethanofuran; E=2e-17 pir:T45154; probable formylmethanofuran dehydrogenase (EC 1.2.99.5); E=3e-17 swissprot:Q59579; FWDC_METTM TUNGSTEN-CONTAINING; E=2e-14 COG: AF1931; COG2218 Formylmethanofuran dehydrogenase subunit C; E=2e-18 TM0394; COG0070 Glutamate synthetase domain 3; E=2e-06 MJ0658; COG2218 Formylmethanofuran dehydrogenase subunit C; E=0.001 PFAM: PF01493; Domain of unknown function DUF14; E=1.3e-06 NP_869100.1 PMID: 7968523 best DB hits: BLAST: pir:B75346; probable competence protein ComECRec2 - Deinococcus; E=2e-19 ddbj:BAA12454.1; (D84432) ComEC [Bacillus subtilis] -----; E=3e-19 swissprot:P39695; CME3_BACSU COME OPERON PROTEIN 3 ----- pir:; E=1e-18 COG: DR1854_2; COG2333 Predicted hydrolases of metallo-beta-lactamase; E=3e-16 BH1335_1; COG0658 Predicted multitransmembrane, metal-binding; E=5e-13 PA2984_2; COG2333 Predicted hydrolases of metallo-beta-lactamase; E=5e-09 PFAM: PF00753; Metallo-beta-lactamase superfamil; E=1.5e-07 NP_869102.1 PMID: 2110138 best DB hits: BLAST: swissprot:P16618; HEM1_BACSU GLUTAMYL-TRNA REDUCTASE (GLUTR); E=4e-56 swissprot:P42807; HEM1_PSEAE GLUTAMYL-TRNA REDUCTASE (GLUTR); E=1e-54 ddbj:BAB06767.1; (AP001517) glutamyl-tRNA reductase [Bacillus; E=8e-53 COG: BS_hemA; COG0373 Glutamyl-tRNA reductase; E=4e-57 PFAM: PF01089; Delta 1-pyrroline-5-carboxyla; E=0.55 PF01408; Oxidoreductase, NAD-bi; E=4.2e-05 PF01488; Shikimate / quinate 5-dehydro; E=7.6e-05 NP_869103.1 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=3e-04 NP_869104.1 PMID: 8052622 best DB hits: BLAST: swissprot:P37978; CNRH_ALCEU RNA POLYMERASE SIGMA FACTOR CNRH; E=5e-04 pir:G83282; probable sigma-70 factor, ECF subfamily PA2896; E=0.008 pir:S74832; transcription initiation factor sigma E sll0856 -; E=0.055 COG: PA2896; COG1595 DNA-directed RNA polymerase specialized sigma; E=8e-04 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=0.028 PF00140; Sigma-70 factor; E=0.028 NP_869105.1 best DB hits: BLAST: pir:T36717; probable serinethreonine protein kinase - Streptomyces; E=4e-44 swissprot:P54744; PKNB_MYCLE SERINETHREONINE-PROTEIN; E=5e-44 swissprot:P71584; PKNB_MYCTU SERINETHREONINE-PROTEIN; E=3e-43 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=3e-44 PFAM: PF00069; Protein kinase domain; E=2.2e-48 NP_869106.1 best DB hits: BLAST: pir:E71127; hypothetical protein PH0786 - Pyrococcus horikoshii; E=0.013 pir:T32472; hypothetical protein F08F1.7 - Caenorhabditis elegans; E=0.87 PFAM: PF02366; Dolichyl-phosphate-mannose-prote; E=0.00021 NP_869107.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity NP_869110.1 best DB hits: BLAST: embl:CAC01649.1; (AL391072) conserved hypothetical protein; E=2e-34 embl:CAB55712.1; (AL117387) hypothetical protein SCF41.09; E=2e-29 swissprot:P55567; Y4MH_RHISN HYPOTHETICAL 33.9 KD PROTEIN Y4MH; E=2e-15 NP_869114.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis NP_869115.1 PMID: 6308579 PMID: 1851954 best DB hits: BLAST: swissprot:O27492; ILVH_METTH PROBABLE ACETOLACTATE SYNTHASE SMALL; E=1e-27 pir:S74358; acetolactate synthase ilvN - Synechocystis sp. (strain; E=5e-27 gb:AAB89532.1; (AE000985) acetolactate synthase, small subunit; E=9e-27 COG: MTH1443; COG0440 Acetolactate synthase, small subunit; E=9e-29 PFAM: PF01842; ACT domain; E=1.1e-18 NP_869117.1 best DB hits: BLAST: swissprot:P35154; YPUG_BACSU HYPOTHETICAL 29.6 KD PROTEIN IN; E=4e-18 ddbj:BAB05279.1; (AP001512) BH1560~unknown conserved protein; E=3e-14 pir:D81075; conserved hypothetical protein NMB1504 [imported] -; E=3e-13 COG: BS_ypuG; COG1354 Uncharacterized ACR; E=4e-19 PFAM: PF02616; Uncharacterized ACR, COG1354; E=1.1e-14 NP_869118.1 best DB hits: BLAST: gb:AAG52354.1; AC011765_6 (AC011765) unknown protein; E=2e-36 gb:AAD55271.1; AC008263_2 (AC008263) ESTs gb AA067482 and gb; E=4e-34 gb:AAD25827.1; AC006951_6 (AC006951) hypothetical protein; E=1e-29 COG: TM0864; COG1234 Metal-dependent hydrolases of the beta-lactamase; E=8e-06 PFAM: PF02112; cAMP phosphodiesterases class-; E=0.25 PF00753; Metallo-beta-lactamase superfa; E=0.036 NP_869119.1 PMID: 8757728 best DB hits: BLAST: ddbj:BAB05062.1; (AP001511) coproporphyrinogen III oxidase; E=7e-49 pir:B69640; coproporphyrinogen oxidase (EC 1.3.3.3) III,; E=4e-47 swissprot:P54304; HEMN_BACSU PROBABLE OXYGEN-INDEPENDENT; E=5e-47 COG: BH1343; COG0635 Coproporphyrinogen III oxidase and related FeS; E=7e-50 PFAM: PF02473; Oxygen-independent Coproporphy; E=2.7e-17 NP_869122.1 best DB hits: BLAST: pir:C83489; probable transcriptional regulator PA1261 [imported] -; E=6e-26 pir:H83309; probable transcriptional regulator PA2696 [imported] -; E=8e-14 ddbj:BAB04708.1; (AP001510) transcriptional regulator (AraCXylS; E=1e-11 COG: PA1261; COG2207 AraC-type DNA-binding domain-containing proteins; E=5e-27 PFAM: PF00989; PAS domain; E=0.18 PF00165; Bacterial regulatory helix-turn-heli; E=7.6e-24 NP_869123.1 PMID: 3153462 best DB hits: BLAST: gb:AAF58870.1; (AE003831) CG12130 gene product [Drosophila; E=0.033 ddbj:BAA06104.1; (D29625) precursor peptide [Equus caballus]; E=0.041 pir:T25723; hypothetical protein F21F3.1 - Caenorhabditis elegans; E=0.14 NP_869124.1 best DB hits: BLAST: gb:AAF24999.1; (AF141320) endo-inulinase [Pseudomonas mucidolens]; E=0.45 NP_869126.1 best DB hits: BLAST: pir:S74947; hypothetical protein slr1591 - Synechocystis sp. (strain; E=1e-43 pir:F83079; NADH dehydrogenase PA4538 [imported] - Pseudomonas; E=9e-08 gb:AAK06224.1; AE006441_2 (AE006441) NADH oxidase [Lactococcus; E=1e-07 COG: slr1591; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; E=1e-44 PA4538; COG1252 NADH dehydrogenase, FAD-containing subunit; E=9e-09 Ta1129; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; E=6e-07 PFAM: PF02411; MerT mercuric transport prote; E=0.58 PF01266; D-amino acid oxidase; E=0.097 PF00070; Pyridine nucleotide-disulphid; E=4.6e-14 NP_869127.1 PMID: 2843510 best DB hits: BLAST: pir:F72119; cytochrome oxidase chain I - Chlamydophila pneumoniae; E=3e-89 pir:A81721; cytochrome D ubiquinol oxidase, chain I TC0281; E=7e-86 pir:F71567; probable cytochrome oxidase chain I - Chlamydia; E=2e-85 COG: CPn0102; COG1271 Cytochrome bd-type quinol oxidase, subunit 1; E=3e-90 PFAM: PF01654; Bacterial Cytochrome Ubiquinol Ox; E=1.3e-170 NP_869128.1 PMID: 2843510 best DB hits: BLAST: gb:AAG01153.1; AF284438_4 (AF284438) cytochrome d oxidase subunit; E=3e-51 pir:H70417; cytochrome oxidase d subunit II - Aquifex aeolicus; E=1e-49 pir:G72119; cytochrome D ubiquinol oxidase, chain II CP0671; E=2e-47 COG: aq_1358; COG1294 Cytochrome bd-type quinol oxidase, subunit 2; E=9e-51 PFAM: PF02322; Cytochrome oxidase subunit II; E=4.7e-139 NP_869131.1 PMID: 8626329 best DB hits: BLAST: embl:CAC11607.1; (AL445064) probable intracellular proteinase I; E=2e-33 pir:F72722; hypothetical protein APE0319 - Aeropyrum pernix (strain; E=4e-27 gb:AAB89965.1; (AE001016) intracellular protease (pfpI); E=3e-20 COG: Ta0465; COG0693 intracellular protease/amidase; E=2e-34 PFAM: PF01965; ThiJ/PfpI family; E=3.6e-26 NP_869136.1 best DB hits: BLAST: pir:S35005; probable transposase - Acetobacter xylinus insertion; E=5e-56 gb:AAD47597.1; AF144038_1 (AF144038) transposase; E=1e-55 pir:S77171; transposase sll1710 - Synechocystis sp. (strain PCC; E=4e-55 COG: sll1710; COG3293 Predicted transposase; E=3e-56 PFAM: PF01511; Transposase; E=9e-35 PF01675; Transposase; E=2.1e-31 NP_869137.1 best DB hits: BLAST: gb:AAD45539.1; U70376_1 (U70376) InsA [Streptomyces netropsis]; E=5e-33 gb:AAG60893.1; AF322013_12 (AF322013) ID460 [Bradyrhizobium; E=8e-33 ddbj:BAA19966.1; (D63923) transposase [Acetobacter pasteurianus]; E=1e-26 NP_869140.1 PMID: 3139632 PMID: 7664125 best DB hits: BLAST: gb:AAA90913.1; (U33060) endo-1,4-beta-xylanase [Thermotoga sp.]; E=2e-33 pir:B72423; endo-1,4-beta-xylanase B - Thermotoga maritima (strain; E=3e-33 swissprot:Q60041; XYNB_THENE ENDO-1,4-BETA-XYLANASE B PRECURSOR; E=2e-31 PFAM: PF00331; Glycosyl hydrolase 10; E=0.05 NP_869142.1 PMID: 3528756 best DB hits: BLAST: pir:C82333; ribosomal protein L9 VC0369 [imported] - Vibrio cholerae; E=2e-23 pir:B82543; 50S ribosomal protein L9 XF2559 [imported] - Xylella; E=9e-20 swissprot:P02418; RL9_ECOLI 50S RIBOSOMAL PROTEIN L9 -----; E=4e-19 COG: VC0369; COG0359 Ribosomal protein L9; E=2e-24 PFAM: PF01281; Ribosomal protein L9; E=1.1e-39 NP_869143.1 PMID: 6270666 PMID: 6384214 best DB hits: BLAST: swissprot:O83101; SSB_TREPA SINGLE-STRAND BINDING PROTEIN (SSB); E=7e-23 embl:CAA76674.1; (Y17166) single strand DNA binding protein; E=1e-19 pir:B81310; single-strand DNA binding protein Cj1071 [imported] -; E=1e-19 COG: TP0062; COG0629 Single-stranded DNA-binding protein; E=7e-24 PFAM: PF00436; Single-strand binding protein family; E=1.7e-48 NP_869145.1 PMID: 3528756 best DB hits: BLAST: embl:CAA76675.1; (Y17166) ribosomal protein S6 [Campylobacter; E=3e-06 swissprot:Q9ZAH3; RS6_CAMJE 30S RIBOSOMAL PROTEIN S6 -----; E=4e-06 swissprot:P56013; RS6_HELPY 30S RIBOSOMAL PROTEIN S6 -----; E=8e-06 COG: Cj1070; COG0360 Ribosomal protein S6; E=4e-07 PFAM: PF01250; Ribosomal protein S6; E=1.3e-13 NP_869146.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation NP_869147.1 best DB hits: BLAST: swissprot:P14194; CTC_BACSU GENERAL STRESS PROTEIN CTC -----; E=4e-18 pir:S05373; ctc protein - Bacillus subtilis (fragment) -----; E=1e-17 ddbj:BAB03786.1; (AP001507) 50S ribosomal protein L25 [Bacillus; E=1e-16 COG: BS_ctc; COG1825 Ribosomal protein L25 (general stress protein Ctc); E=4e-19 PFAM: PF01386; Ribosomal L25p family; E=6.1e-20 NP_869148.1 best DB hits: BLAST: ddbj:BAB10440.1; (AB009055) pyruvate kinase [Arabidopsis; E=0.25 NP_869149.1 binds and unfolds substrates as part of the ClpXP protease NP_869150.1 best DB hits: PFAM: PF01537; Herpesvirus glycoprotein D; E=0.22 NP_869151.1 best DB hits: BLAST: pir:T34932; hypothetical protein SC3F9.10 SC3F9.10 - Streptomyces; E=5e-06 pir:T36189; probable isomerase - Streptomyces coelicolor -----; E=0.001 NP_869153.1 best DB hits: BLAST: pir:H82133; conserved hypothetical protein VC1966 [imported] -; E=1e-23 pir:F81867; probable integral membrane protein NMA1715 [imported] -; E=4e-22 pir:B81074; transporter, probable NMB1515 [imported] - Neisseria; E=1e-21 COG: VC1966_1; COG0477 Permeases of the major facilitator superfamily; E=1e-22 NP_869155.1 best DB hits: BLAST: swissprot:O05979; Y789_RICPR HYPOTHETICAL PROTEIN RP789 -----; E=9e-51 embl:CAA72463.1; (Y11779) hypothetical protein [Rickettsia; E=6e-37 gb:AAK02458.1; (AE006073) unknown [Pasteurella multocida]; E=5e-35 COG: RP789_1; COG0500 SAM-dependent methyltransferases; E=8e-47 NP_869156.1 PMID: 8027026 best DB hits: BLAST: gb:AAD52151.1; AF132298_1 (AF132298) broadly selective; E=3e-54 gb:AAK03376.1; (AE006168) unknown [Pasteurella multocida]; E=6e-54 swissprot:Q62674; CNT1_RAT SODIUMNUCLEOSIDE COTRANSPORTER 1; E=2e-53 COG: BH1446; COG1972 Nucleoside permease; E=2e-53 PFAM: PF01773; Na+ dependent nucleoside tran; E=1.1e-142 NP_869159.1 best DB hits: BLAST: embl:CAB66476.1; (AL136541) hypothetical protein [Homo sapiens]; E=0.31 embl:CAA62913.1; (X91803) sodium-calcium exchanger; E=0.43 PFAM: PF00404; Dockerin type I repeat; E=0.19 NP_869160.1 PMID: 7928962 best DB hits: BLAST: pir:F82311; survival protein SurE VC0531 [imported] - Vibrio; E=2e-37 gb:AAD51394.1; AF117715_3 (AF117715) survival protein homolog; E=8e-35 swissprot:O67004; SURE_AQUAE STATIONARY-PHASE SURVIVAL PROTEIN; E=5e-34 COG: VC0531; COG0496 Survival protein, predicted acid phosphatase; E=2e-38 PFAM: PF01975; Survival protein SurE; E=3.1e-64 NP_869161.1 best DB hits: BLAST: pir:D82536; conserved hypothetical protein XF2619 [imported] -; E=1e-140 pir:T49917; hypothetical protein T24H18.200 - Arabidopsis thaliana; E=1e-100 swissprot:P77649; YDIU_ECOLI HYPOTHETICAL 54.4 KD PROTEIN IN; E=2e-82 COG: XF2619; COG0397 Uncharacterized ACR; E=1e-141 PFAM: PF02696; Uncharacterized ACR, YdiU/UPF0061; E=5e-63 NP_869162.1 best DB hits: PFAM: PF01676; Metalloenzyme superfamily; E=0.78 NP_869167.1 best DB hits: BLAST: pir:C72330; astBchuR-related protein - Thermotoga maritima (strain; E=1e-30 gb:AAB89245.1; (AE000964) heme biosynthesis protein (nirJ-2); E=2e-14 pir:H72545; probable coenzyme PQQ synthesis protein APE1652 -; E=4e-10 COG: TM0824; COG0535 Predicted Fe-S oxidoreductases; E=1e-31 AF2006; COG2896 Molybdenum cofactor biosynthesis enzyme; E=0.002 MJ0907; COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); E=0.004 PFAM: PF01444; moaA / nifB / pqqE family; E=0.00043 NP_869169.1 best DB hits: BLAST: ddbj:BAB05884.1; (AP001514) BH2165~unknown conserved protein; E=3e-11 ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=1e-09 gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=2e-09 COG: BH2165; COG0673 Predicted dehydrogenases and related proteins; E=3e-12 PFAM: PF01408; Oxidoreductase, NAD-bin; E=3.7e-23 NP_869170.1 PMID: 11259647 NP_869172.1 PMID: 10517319 best DB hits: BLAST: gb:AAF35250.1; AF227632_1 (AF227632) mismatch binding protein Mus3; E 4e-12 pir:T41262; mutS family DNA mismatch repair protein - fission yeast; E 3e-11 gb:AAB57798.1; (AF001535) AGAA.3 [Arabidopsis thaliana]; E=5e-11 COG: VC0535; COG0249 MutS-like ATPases involved in mismatch repair,; E=5e-12 BU429; COG0249 MutS-like ATPases involved in mismatch repair, family; E=6e-12 XF1716; COG0249 MutS-like ATPases involved in mismatch repair,; E=1e-10 PFAM: PF00488; DNA mismatch repair proteins, mutS f; E=0.0026 NP_869174.1 best DB hits: BLAST: embl:CAC24034.1; (AL512980) ORF-c34_017 [Sulfolobus solfataricus]; E=1e-11 pir:H69216; 3-chlorobenzoate-3,4-dioxygenase dyhydrogenase related; E=3e-10 pir:T36464; probable oxidoreductase - Streptomyces coelicolor; E=2e-09 COG: MTH875; COG0673 Predicted dehydrogenases and related proteins; E=3e-11 PFAM: PF01408; Oxidoreductase, NAD-bin; E=1.1e-09 PF02894; Oxidoreductase, C-termi; E=0.0018 NP_869175.1 PMID: 8293960 best DB hits: BLAST: pir:B75598; probable mannose-6-phosphate isomerase - Deinococcus; E=7e-43 pir:H69848; mannose-6-phosphate isomerase homolog yjdE - Bacillus; E=5e-39 ddbj:BAA75351.1; (AB011838) mannnose-6 phospate isomelase; E=8e-39 COG: DRA0048; COG1482 Phosphomannose isomerase; E=7e-44 PFAM: PF01238; Phosphomannose isomerase type I; E=0.0026 NP_869180.1 best DB hits: BLAST: pir:C75316; conserved hypothetical protein - Deinococcus radiodurans; E=1e-63 gb:AAG19052.1; (AE005004) Vng0525c [Halobacterium sp. NRC-1]; E=1e-47 pir:B72260; conserved hypothetical protein - Thermotoga maritima; E=2e-46 COG: DR2101; COG0719 Predicted membrane components of an uncharacterized; E=1e-64 VNG0525C; COG0719 Predicted membrane components of an; E=1e-48 TM1369; COG0719 Predicted membrane components of an uncharacterized; E=2e-47 PFAM: PF02291; Transcription initiation factor IID,; E=0.53 PF01458; Uncharacterized protein family (UPF0; E=2.1e-67 NP_869181.1 best DB hits: BLAST: ddbj:BAB07186.1; (AP001518) BH3467~unknown conserved protein; E=1e-174 pir:T35997; conserved hypothetical protein SCC22.07c - Streptomyces; E=1e-174 pir:D70019; conserved hypothetical protein yurU - Bacillus subtilis; E=1e-171 COG: BH3467; COG0719 Predicted membrane components of an uncharacterized; E=1e-175 VNG0525C; COG0719 Predicted membrane components of an; E=1e-135 TP0612; COG0719 Predicted membrane components of an uncharacterized; E=1e-132 PFAM: PF01458; Uncharacterized protein family (UPF0; E=8.2e-125 NP_869182.1 best DB hits: BLAST: pir:B70872; probable ABC-type transporter ATP-binding protein -; E=3e-68 swissprot:P80866; V296_BACSU VEGETATIVE PROTEIN 296 (VEG296); E=4e-66 ddbj:BAB07190.1; (AP001518) ABC transporter (ATP-binding protein); E=1e-64 COG: Rv1463; COG0396 Iron-regulated ABC transporter ATPase subunit SufC; E=3e-69 PFAM: PF00005; ABC transporter; E=9.6e-30 NP_869183.1 best DB hits: BLAST: pir:D82048; conserved hypothetical protein VC2666 [imported] -; E=7e-06 ddbj:BAB07148.1; (AP001518) BH3429~unknown conserved protein in; E=0.001 pir:S72759; hypothetical protein B1496_C2_188 - Mycobacterium leprae; E=0.004 COG: VC2666; COG2345 Predicted transcriptional regulator; E=7e-07 PFAM: PF01037; AsnC family; E=0.23 NP_869184.1 PMID: 8436115 PMID: 2803257 best DB hits: BLAST: gb:AAG18991.1; (AE004999) glucose dehydrogenase; Gcd; E=2e-27 pir:T44937; glucose 1-dehydrogenase (EC 1.1.1.47) [imported] -; E=1e-25 pir:S29788; glucose 1-dehydrogenase (EC 1.1.1.47) - Thermoplasma; E=3e-13 COG: VNG0446G; COG1063 Threonine dehydrogenase and related Zn-dependent; E=2e-28 YDL168w; COG1062 Zn-dependent alcohol dehydrogenases, class III; E=0.003 XF1727; COG1063 Threonine dehydrogenase and related Zn-dependent; E=0.005 PFAM: PF00107; Zinc-binding dehydrogenases; E=3.1e-22 NP_869185.1 best DB hits: BLAST: gb:AAG19748.1; (AE005060) phosphoglycerate dehydrogenase; SerA2; E=4e-30 swissprot:P45637; YPRA_CORGL HYPOTHETICAL 33.0 KD PROTEIN IN; E=2e-28 pir:T35826; probable dehydrogenase - Streptomyces coelicolor -----; E=5e-26 COG: VNG1437G; COG0111 Phosphoglycerate dehydrogenase and related; E=3e-31 PA2263; COG1052 Lactate dehydrogenase and related dehydrogenases; E=2e-25 MTH970; COG0111 Phosphoglycerate dehydrogenase and related; E=3e-25 PFAM: PF02826; D-isomer specific 2-hydroxyacid; E=3.8e-62 NP_869187.1 PMID: 1356963 PMID: 7860596 PMID: 9693059 PMID: 10903950 PMID: 1453690 best DB hits: BLAST: ddbj:BAA97018.1; (AB024032) contains similarity to pyridoxamine; E=3e-50 embl:CAB95898.1; (AL359988) pyridoxamine oxidase; E=5e-50 pir:F83513; pyridoxine 5'-phosphate oxidase PA1049 [imported] -; E=1e-49 COG: PA1049; COG0259 Pyridoxamine phosphate oxidase; E=1e-50 PFAM: PF01243; Pyridoxamine 5'-phosphate oxi; E=4.2e-107 NP_869188.1 best DB hits: BLAST: gb:AAF97283.1; AC010164_5 (AC010164) Unknown protein [Arabidopsis; E=0.087 pir:B82584; transcriptional regulator XF2228 [imported] - Xylella; E=0.32 pir:T10016; hypothetical protein - Mycobacterium leprae -----; E=0.64 NP_869189.1 PMID: 8631696 best DB hits: BLAST: swissprot:P77605; CSPI_ECOLI COLD SHOCK-LIKE PROTEIN CSPI; E=0.27 embl:CAA72682.1; (Y11932) cspB [Salmonella typhimurium]; E=0.31 swissprot:Q47130; CSPG_ECOLI COLD SHOCK-LIKE PROTEIN CSPG; E=0.36 PFAM: PF00313; 'Cold-shock' DNA-binding domain; E=6.7e-05 NP_869191.1 best DB hits: PFAM: PF01676; Metalloenzyme superfamily; E=0.19 NP_869199.1 best DB hits: BLAST: pir:D83031; conserved hypothetical protein PA4926 [imported] -; E=4e-49 swissprot:Q50652; YP69_MYCTU HYPOTHETICAL 34.4 KDA PROTEIN RV2569C; E=2e-32 embl:CAA19100.1; (AL023591) hypothetical protein MLCB1259.25; E=4e-32 COG: PA4926; COG1305 transglutaminases, cysteine; E=4e-50 PFAM: PF01841; Transglutaminase-like superfam; E=1.6e-20 NP_869200.1 best DB hits: BLAST: pir:E83031; conserved hypothetical protein PA4927 [imported] -; E=1e-107 embl:CAA17945.1; (AL022118) hypothetical protein MLCB1913.13; E=1e-94 swissprot:Q50654; YP67_MYCTU HYPOTHETICAL 95.4 KDA PROTEIN RV2567; E=4e-88 COG: PA4927_1; COG2308 Uncharacterized BCR; E=4e-78 PA4927_2; COG2307 Uncharacterized BCR; E=4e-23 NP_869201.1 best DB hits: BLAST: pir:B70729; hypothetical protein Rv2566 - Mycobacterium tuberculosis; E=0.0 gb:AAD10833.1; (U49838) 72.2 KDa protein [Mycobacterium leprae]; E=1e-174 embl:CAA17944.1; (AL022118) hypothetical protein MLCB1913.12; E=1e-110 COG: Rv2566_1; COG1305 transglutaminases, cysteine; E=6e-81 PFAM: PF01841; Transglutaminase-like superfam; E=2.7e-17 NP_869202.1 best DB hits: BLAST: pir:S74601; hypothetical protein sll1039 - Synechocystis sp. (strain; E=2e-67 gb:AAC08422.1; (AF054525) hypothetical protein [Synechococcus sp.; E=1e-61 pir:B75323; conserved hypothetical protein - Deinococcus radiodurans; E=1e-35 COG: sll1039; COG2307 Uncharacterized BCR; E=2e-68 NP_869203.1 best DB hits: BLAST: swissprot:Q55587; Y335_SYNY3 HYPOTHETICAL 53.7 KDA PROTEIN SLL0335; E=1e-169 gb:AAC08421.1; (AF054525) hypothetical protein [Synechococcus sp.; E=1e-160 pir:C83429; conserved hypothetical protein PA1730 [imported] -; E=1e-135 COG: sll0335; COG2308 Uncharacterized BCR; E=1e-170 NP_869206.1 best DB hits: BLAST: gb:AAG31169.1; (AF314961) unknown [Salmonella typhimurium]; E=0.23 pir:C82804; conserved hypothetical protein XF0464 [imported] -; E=0.79 PFAM: PF01011; PQQ enzyme repeat; E=0.016 NP_869207.1 best DB hits: BLAST: embl:CAA77139.1; (Y18353) hypothetical protein [Thermus; E=2e-29 swissprot:P42981; YPJG_BACSU HYPOTHETICAL 24.8 KD PROTEIN IN; E=1e-24 ddbj:BAB05401.1; (AP001512) BH1682~unknown conserved protein; E=3e-23 COG: DR2363a; COG2120 Uncharacterized proteins, LmbE homologs; E=9e-32 PFAM: PF02585; Uncharacterized LmbE-like protein, C; E=4.6e-12 NP_869209.1 best DB hits: BLAST: gb:AAF31458.1; (AF223393) HRNT1 [Homo sapiens]; E=0.31 pir:B70374; conserved hypothetical protein aq_854 - Aquifex aeolicus; E=0.47 pir:A72220; conserved hypothetical protein - Thermotoga maritima; E=0.11 COG: PA5257; COG3071 Uncharacterized enzyme of heme biosynthesis; E=0.007 PFAM: PF00515; TPR Domain; E=2.9e-05 NP_869210.1 best DB hits: BLAST: gb:AAD05531.1; (AF083240) c-type cytochrome precursor [Shewanella; E=1e-04 gb:AAD05534.1; (AF083240) deca-heme c-type cytochrome [Shewanella; E=0.001 NP_869214.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_869217.1 PMID: 97078679 best DB hits: BLAST: embl:CAA67214.1; (X98625) sialic acid-specific 9-O-acetylesterase; E=1e-32 gb:AAB07813.1; (U40408) sialic-acid O-acetylesterase [Mus; E=2e-32 gb:AAD55976.1; (AF156856) cytosolic sialic acid; E=2e-29 NP_869218.1 PMID: 8052622 best DB hits: BLAST: gb:AAF18265.1; U22895_1 (U22895) alternative sigma factor AlgU; E=2e-04 gb:AAF01335.1; AF190580_1 (AF190580) alternate sigma factor AlgT; E=8e-04 gb:AAC98488.1; (AF049107) ECF sigma factor RpoE1; E=0.001 COG: PA0762; COG1595 DNA-directed RNA polymerase specialized sigma; E=3e-04 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=3.1e-05 PF00140; Sigma-70 factor; E=0.6 NP_869221.1 best DB hits: BLAST: gb:AAC46093.1; (U81973) Cap5J [Staphylococcus aureus]; E=0.32 NP_869222.1 best DB hits: BLAST: pir:A70799; probable transcriptional regulator Rv3744 -; E=4e-07 pir:A75601; transcription repressor SmtB - Deinococcus radiodurans; E=8e-07 swissprot:P37374; CADF_STAAU CADMIUM EFFLUX SYSTEM ACCESSORY; E=1e-06 COG: Rv3744; COG0640 Predicted transcriptional regulators; E=5e-08 PFAM: PF01022; Bacterial regulatory protein, arsR f; E=3.5e-19 NP_869223.1 best DB hits: BLAST: ddbj:BAB04085.1; (AP001508) BH0366~unknown conserved protein in; E=1e-09 embl:CAC28817.1; (AL513466) conserved hypothetical protein; E=7e-08 pir:D82449; conserved hypothetical protein VCA0527 [imported] -; E=3e-07 COG: BH0366; COG0523 GTPases (G3E family); E=9e-11 sll1079; COG0378 Urease/hydrogenase-associated predicted GTPases; E=0.004 CT418; COG0536 Predicted GTPase; E=0.004 PFAM: PF01443; Viral (Superfamily 1) RNA hel; E=0.53 PF01583; Adenylylsulfate kinase; E=0.7 PF02223; Thymidylate kinase; E=0.0067 NP_869224.1 catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate NP_869225.1 best DB hits: BLAST: ddbj:BAA82692.1; (AB013492) ORF14 [Bacillus halodurans] -----; E=4e-20 pir:D83132; hypothetical protein PA4108 [imported] - Pseudomonas; E=4e-17 pir:E71268; conserved hypothetical protein TP0912 - syphilis; E=4e-15 COG: BH0008; COG2206 HD-GYP domain; E=4e-21 NP_869228.1 best DB hits: BLAST: pir:G69742; hypothetical protein ybaJ - Bacillus subtilis -----; E=7e-13 pir:E83313; conserved hypothetical protein PA2650 [imported] -; E=9e-12 pir:S76919; hypothetical protein - Synechocystis sp. (strain PCC; E=6e-04 COG: BS_ybaJ; COG0500 SAM-dependent methyltransferases; E=7e-14 XF2471; COG2227; E=0.004 NP_869231.1 best DB hits: BLAST: pir:G82627; hypothetical protein XF1887 [imported] - Xylella; E=1e-40 PFAM: PF00949; Flavivirus helicase (NS3); E=0.44 PF00089; Trypsin; E=0.59 PF00571; CBS domain; E=0.31 NP_869232.1 best DB hits: BLAST: pir:G69815; ABC transporter (ATP-binding protein) homolog ygaD -; E=6e-66 gb:AAG49002.1; (AY013246) ABC transporter [Hordeum; E=4e-63 pir:A75590; ABC transporter ATP-binding protein - Deinococcus; E=6e-63 COG: BS_ygaD; COG1132 ABC-type multidrug/protein/lipid transport system,; E=6e-67 PFAM: PF00664; ABC transporter transmembrane re; E=8.5e-30 PF02463; SMC domain N terminal domain; E=0.53 PF01202; Shikimate kinase; E=0.019 NP_869234.2 best DB hits: BLAST: ddbj:BAB07544.1; (AP001520) BH3825~unknown conserved protein; E=7e-27 swissprot:P39645; YWFI_BACSU HYPOTHETICAL 29.5 KD PROTEIN IN; E=5e-24 gb:AAG20186.1; (AE005095) Vng2021c [Halobacterium sp. NRC-1]; E=7e-24 COG: BH3825; COG3253 Uncharacterized ACR; E=7e-28 NP_869235.1 best DB hits: BLAST: embl:CAB66289.1; (AL136519) hypothetical protein SCC57A.21c.; E=3e-19 swissprot:P42419; IOLI_BACSU IOLI PROTEIN ----- pir: A69646; E=4e-07 ddbj:BAB06034.1; (AP001515) myo-inositol catabolism [Bacillus; E=1e-06 COG: BS_iolI; COG1082 Predicted endonucleases; E=4e-08 PFAM: PF01542; Hepatitis C virus core protei; E=0.23 NP_869236.1 best DB hits: BLAST: ref:XP_002773.1; CGI-105 protein [Homo sapiens]; E=4e-56 gb:AAD34100.1; AF151863_1 (AF151863) CGI-105 protein [Homo; E=6e-56 gb:AAF55945.1; (AE003737) CG6028 gene product [Drosophila; E=3e-54 COG: BH2000; COG0179 2-keto-4-pentenoate; E=1e-45 PFAM: PF01557; Fumarylacetoacetate (FAA) hydro; E=5.1e-83 NP_869237.1 best DB hits: BLAST: gb:AAC09305.1; (AF047044) transposase [Nostoc sp. PCC; E=2e-41 pir:A32816; hypothetical protein, 33K - Pseudomonas atlantica; E=7e-35 pir:B81886; probable transposase NMA1185 [imported] - Neisseria; E=1e-30 PFAM: PF01548; Transposase; E=2.2e-05 PF02371; Transposase IS116/IS110/IS902; E=1.3e-25 NP_869240.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_869242.1 PMID: 10888605 best DB hits: BLAST: gb:AAF81717.1; AF252281_1 (AF252281) Kelch-like 1 protein [Mus; E=2e-09 gb:AAD39007.1; AF156857_1 (AF156857) actin-binding protein [Homo; E=3e-09 gb:AAK00278.1; AF285178_1 (AF285178) actin-binding protein MIPP; E=3e-08 COG: HI0148; COG3055 Uncharacterized BCR; E=9e-06 PFAM: PF01344; Kelch motif; E=0.0021 NP_869244.1 best DB hits: BLAST: gb:AAF48350.1; (AE003495) CG11590 gene product [Drosophila; E=7e-12 gb:AAB89277.1; (AE000966) periplasmic divalent cation tolerance; E=2e-11 pir:C69068; divalent cation tolerance protein - Methanobacterium; E=2e-11 COG: AF1978; COG1324 Uncharacterized protein involved in tolerance to; E=2e-12 NP_869246.1 PMID: 2540413 best DB hits: BLAST: swissprot:P13455; DP3B_PSEPU DNA POLYMERASE III, BETA CHAIN; E=1e-31 pir:C81713; DNA polymerase III, beta chain TC0347 [imported] -; E=1e-29 pir:E71559; probable DNA pol III (beta chain) - Chlamydia; E=1e-29 COG: CT075; COG0592 DNA polymerase III beta subunit; E=1e-30 PFAM: PF00712; DNA polymerase III beta subun; E=7.1e-16 PF02767; DNA polymerase III beta subun; E=2.4e-12 PF02768; DNA polymerase III beta subun; E=1e-10 NP_869247.1 best DB hits: BLAST: pir:D72328; hypothetical protein - Thermotoga maritima (strain MSB8); E=0.18 NP_869248.1 PMID: 2664449 PMID: 3062174 PMID: 8494895 best DB hits: BLAST: swissprot:P26721; HIS6_AZOBR HISF PROTEIN (CYCLASE) ----- pir:; E=6e-87 swissprot:O66567; HIS6_AQUAE HISF PROTEIN (CYCLASE) ----- pir:; E=1e-84 pir:H83002; imidazoleglycerol-phosphate synthase, cyclase subunit; E=2e-84 COG: aq_181; COG0107 Imidazoleglycerol-phosphate synthase; E=1e-85 PFAM: PF01791; Deoxyribose-phosphate aldolase; E=0.43 PF00977; Histidine biosynthesis protein; E=1.9e-135 NP_869249.1 PMID: 3036807 best DB hits: BLAST: swissprot:P12048; PUR9_BACSU BIFUNCTIONAL PURINE BIOSYNTHESIS; E=1e-125 ddbj:BAB04352.1; (AP001509); E=1e-124 gb:AAF33520.1; (AF170176) Salmonella typhimurium; E=1e-118 COG: BS_purH; COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only; E=1e-126 purH; COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP; E=1e-119 HI0887; COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only; E=1e-118 PFAM: PF02142; MGS-like domain; E=2.2e-46 PF01808; AICARFT/IMPCHase bienzyme; E=1.3e-113 NP_869250.1 PMID: 1896020 PMID: 7007653 PMID: 6355484 best DB hits: BLAST: swissprot:P26938; TRPC_AZOBR INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE; E=6e-55 swissprot:P94327; TRPC_BRAJA INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE; E=3e-52 swissprot:Q9ZFA7; TRPC_RHOSH INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE; E=2e-51 COG: XF0213; COG0134 Indole-3-glycerol phosphate synthase; E=5e-51 PFAM: PF00218; Indole-3-glycerol phosphate synthase; E=2.6e-111 NP_869252.1 PMID: 7910580 PMID: 1572648 best DB hits: BLAST: embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=4e-61 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=4e-61 pdb:1E2S; P Chain P, Crystal Structure Of An Arylsulfatase A; E=4e-60 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=5e-33 PFAM: PF00884; Sulfatase; E=3.7e-106 NP_869253.1 PMID: 10950929 PMID: 7910580 best DB hits: BLAST: pir:F70837; probable sulfatase (EC 3.1.6.-) atsG - Mycobacterium; E=9e-28 gb:AAG41945.1; AF304053_1 (AF304053) heparan N-sulfatase [Mus; E=5e-25 gb:AAF29467.1; (AF156255) N-sulfoglucosamine sulfohydrolase [Mus; E=6e-25 COG: Rv0296c; COG3119 Arylsulfatase A and related enzymes; E=8e-29 TM1703; COG1368 Phosphoglycerol transferase and related proteins,; E=0.008 PFAM: PF00884; Sulfatase; E=4e-22 NP_869254.1 best DB hits: BLAST: swissprot:P54744; PKNB_MYCLE SERINETHREONINE-PROTEIN; E=9e-38 pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=3e-37 ddbj:BAB06223.1; (AP001515) serinethreonine protein kinase; E=7e-37 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=2e-38 PFAM: PF00069; Protein kinase domain; E=2.1e-52 NP_869255.1 PMID: 7768826 PMID: 7889934 PMID: 7889935 best DB hits: BLAST: pir:H82073; RNA polymerase sigma-E factor VC2467 [imported] - Vibrio; E=1e-05 swissprot:P44790; RPOE_HAEIN RNA POLYMERASE SIGMA-E FACTOR; E=9e-05 pir:C82583; RNA polymerase sigma-H factor XF2239 [imported] -; E=3e-04 COG: VC2467; COG1595 DNA-directed RNA polymerase specialized sigma; E=1e-06 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=0.0054 PF00140; Sigma-70 factor; E=2.7e-05 NP_869257.1 best DB hits: BLAST: pir:A82580; polyvinylalcohol dehydrogenase XF2259 [imported] -; E=0.003 pir:H69064; serinethreonine protein kinase related protein -; E=0.013 pir:C83171; conserved hypothetical protein PA3800 [imported] -; E=0.14 COG: XF2259; COG1520 Uncharacterized proteins of WD40-like repeat family; E=3e-04 PFAM: PF01011; PQQ enzyme repeat; E=0.0033 NP_869260.1 PMID: 8700860 PMID: 3399393 best DB hits: BLAST: gb:AAC59865.1; (U37373) up-regulated by thyroid hormone in; E=9e-60 ddbj:BAB14717.1; (AK023902) unnamed protein product [Homo; E=6e-59 pir:A58519; hypothetical 345 protein - Streptomyces coelicolor; E=5e-42 COG: slr1608; COG2133 Glucose/sorbosone dehydrogenases; E=1e-22 NP_869261.1 PMID: 9350870 PMID: 2925252 PMID: 1379319 PMID: 7516906 best DB hits: BLAST: gb:AAC45700.1; (U92214) macrophage infectivity potentiator; E=4e-36 gb:AAC45696.1; (U92229) macrophage infectivity potentiator; E=4e-35 gb:AAC45668.1; (U91606) macrophage infectivity potentiator; E=5e-35 COG: PA3262; COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1; E=1e-33 PFAM: PF01346; Domain amino terminal to FKBP-type p; E=7.4e-14 PF00254; FKBP-type peptidyl-prolyl cis-trans; E=2e-48 NP_869262.1 best DB hits: BLAST: swissprot:Q11053; PKNH_MYCTU PROBABLE SERINETHREONINE-PROTEIN; E=3e-35 embl:CAB94054.1; (AL358672) serinethreonine-protein; E=1e-34 embl:CAA10713.1; (AJ132604) hypothetical protein [Lactococcus; E=2e-33 COG: Rv1266c; COG0515 Serine/threonine protein kinases; E=3e-36 PFAM: PF00069; Protein kinase domain; E=7.6e-54 NP_869263.1 best DB hits: BLAST: gb:AAK05177.1; AE006340_10 (AE006340) 50S ribosomal protein L21; E=4e-10 pir:F82920; ribosomal protein L21 UU212 [imported] - Ureaplasma; E=3e-11 gb:AAC35614.1; (AF041468) ribosomal protein L21 [Guillardia; E=3e-10 COG: Rv2442c; COG0261 Ribosomal protein L21; E=3e-07 PFAM: PF00829; Ribosomal prokaryotic L21 prot; E=2.2e-36 NP_869267.1 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=0.018 NP_869269.1 best DB hits: BLAST: pir:B82127; sulfate permease VC2031 [imported] -; E=1e-89 pir:G83325; probable sulfate transporter PA2563 [imported] -; E=5e-53 ddbj:BAB04133.1; (AP001508) sulfate permease [Bacillus; E=1e-51 COG: VC2031; COG0659 Sulfate permease and related transporters (MFS; E=1e-90 PFAM: PF00916; Sulfate transporter family; E=9.5e-12 PF00955; HCO3- transporter family; E=0.86 PF00916; Sulfate transporter family; E=4.5e-54 NP_869272.1 PMID: 1909424 best DB hits: BLAST: swissprot:P26223; XYNB_BUTFI ENDO-1,4-BETA-XYLANASE B (XYLANASE B); E=2e-18 prf:1718306A; xylanase [Butyrivibrio fibrisolvens]; E=2e-18 gb:AAK04528.1; AE006280_4 (AE006280) sugar hydrolase [Lactococcus; E=1e-17 COG: DR0821_2; COG0657 Acetyl esterase; E=6e-06 DR0165; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; E=0.004 PFAM: PF01738; Dienelactone hydrolase; E=0.81 PF00561; alpha/beta hydrolase fold; E=0.0016 NP_869276.1 best DB hits: BLAST: swissprot:P33450; FAT_DROME CADHERIN-RELATED TUMOR SUPPRESSOR; E=0.68 pir:IJFFTM; cadherin-related tumor suppressor precursor - fruit fly; E=0.68 gb:AAF51036.1; (AE003577) ft gene product [Drosophila melanogaster]; E=0.68 PFAM: PF00028; Cadherin domain; E=0.014 PF00801; PKD domain; E=0.0048 PF02101; Ocular albinism type 1 protei; E=0.26 NP_869278.1 best DB hits: PFAM: PF00404; Dockerin type I repeat; E=0.039 NP_869279.1 PMID: 835671 best DB hits: BLAST: swissprot:P54744; PKNB_MYCLE SERINETHREONINE-PROTEIN; E=3e-34 swissprot:P71584; PKNB_MYCTU SERINETHREONINE-PROTEIN; E=5e-33 pir:T36717; probable serinethreonine protein kinase - Streptomyces; E=9e-32 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=5e-34 PFAM: PF00069; Protein kinase domain; E=1.3e-46 PF00400; WD domain, G-beta repeat; E=0.00029 NP_869280.1 PMID: 12024217 best DB hits: BLAST: pir:T02748; hypothetical protein R31180_1 - human ----- gb:; E=0.38 NP_869281.1 PMID: 7836292 best DB hits: BLAST: gb:AAA65703.1; (U12976) polyhydroxyalkanoate depolymerase; E=0.16 swissprot:P52090; PHA1_PSELE POLY(3-HYDROXYALKANOATE) DEPOLYMERASE; E=0.53 PFAM: PF01841; Transglutaminase-like superfam; E=0.00014 NP_869284.1 PMID: 2188958 best DB hits: BLAST: swissprot:P16703; CYSM_ECOLI CYSTEINE SYNTHASE B (O-ACETYLSERINE; E=1e-30 pir:D82758; cysteine synthase XF0831 [imported] - Xylella fastidiosa; E=1e-30 swissprot:P95230; CYSK_MYCTU CYSTEINE SYNTHASE A (O-ACETYLSERINE; E=2e-30 COG: cysM; COG0031 Cysteine synthase; E=1e-31 PFAM: PF00291; Pyridoxal-phosphate dependent enzyme; E=5.9e-51 NP_869285.1 PMID: 9369242 best DB hits: BLAST: gb:AAA64636.1; (U07235) aldehyde dehydrogenase [Mus musculus]; E=1e-163 gb:AAA51693.1; (M20456) aldehyde dehydrogenase [Homo sapiens]; E=1e-163 pir:DEHUE2; aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) 2 precursor,; E=1e-162 COG: BH0539; COG1012 NAD-dependent aldehyde dehydrogenases; E=1e-156 PFAM: PF00171; Aldehyde dehydrogenase; E=1.5e-240 NP_869286.1 best DB hits: BLAST: pir:E83192; hypothetical protein PA3615 [imported] - Pseudomonas; E=2e-63 embl:CAC01341.1; (AL390975) hypothetical protein [Streptomyces; E=8e-33 pir:C81216; conserved hypothetical protein NMB0283 [imported] -; E=5e-29 COG: PA3615; COG1611 Predicted Rossmann fold nucleotide-binding protein; E=2e-64 NP_869288.1 best DB hits: BLAST: pir:A72312; conserved hypothetical protein - Thermotoga maritima; E=4e-47 pir:S74581; hypothetical protein slr1411 - Synechocystis sp. (strain; E=1e-41 pir:E69014; hypothetical protein MTH1109 - Methanobacterium; E=6e-37 COG: TM0964; COG1641 Uncharacterized ACR; E=4e-48 PFAM: PF01969; Protein of unknown function DUF111; E=6.1e-89 NP_869291.1 best DB hits: BLAST: ddbj:BAB06575.1; (AP001516) peptidase [Bacillus halodurans]; E=1e-133 pir:T44581; thimet oligopeptidase (EC 3.4.24.15) [imported] -; E=1e-133 swissprot:O31605; PEPF_BACSU OLIGOENDOPEPTIDASE F HOMOLOG -----; E=1e-133 COG: BH2856; COG1164 Oligoendopeptidase F; E=1e-134 PFAM: PF01432; Peptidase M3; E=2.5e-94 NP_869292.1 PMID: 7921236 best DB hits: BLAST: swissprot:P36947; RBSA_BACSU RIBOSE TRANSPORT ATP-BINDING PROTEIN; E=4e-92 embl:CAB66285.1; (AL136519) ABC transporter protein, ATP binding; E=2e-90 gb:AAK05735.1; AE006394_5 (AE006394) ribose ABC transporter ATP; E=1e-89 COG: BS_rbsA; COG1129 ABC-type sugar (aldose) transport system, ATPase; E=4e-93 PFAM: PF02239; Cytochrome D1 heme domain; E=0.31 PF00005; ABC transporter; E=3e-50 NP_869295.1 PMID: 7798145 best DB hits: BLAST: ddbj:BAB07483.1; (AP001519) uracil phosphoribosyltransferase; E=8e-45 pir:T48896; uracil phosphoribosyltransferase (EC 2.4.2.9) upp; E=3e-43 swissprot:P39149; UPP_BACSU URACIL PHOSPHORIBOSYLTRANSFERASE (UMP; E=8e-42 COG: BH3764; COG0035 Uracil phosphoribosyltransferase; E=7e-46 PFAM: PF00156; Phosphoribosyl transferase doma; E=6.1e-05 NP_869296.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides NP_869298.1 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=0.004 embl:CAB94634.1; (AL359215) secreted glycosyl hydrolase.; E=0.013 ddbj:BAB04428.1; (AP001509) BH0709~unknown conserved protein in; E=0.39 NP_869299.1 best DB hits: BLAST: pir:S76571; hypothetical protein - Synechocystis sp. (strain PCC; E=1e-06 pir:C72255; hypothetical protein - Thermotoga maritima (strain MSB8); E=5e-05 swissprot:P38527; RHO_THEMA TRANSCRIPTION TERMINATION FACTOR RHO; E=0.71 COG: sll0185; COG3330 Uncharacterized BCR; E=1e-07 NP_869304.1 PMID: 2902844 best DB hits: BLAST: swissprot:P15012; ATP6_RHORU ATP SYNTHASE A CHAIN (PROTEIN 6); E=3e-09 gb:AAD12651.1; (U02970) H(+)-transporting ATPase [Prototheca; E=1e-08 gb:AAF24787.1; U17009_19 (U17009) ATP synthase F0 subunit 6; E=6e-08 COG: XF1149; COG0356 F0F1-type ATP synthase a subunit; E=5e-07 PFAM: PF00119; ATP synthase A chain; E=3.3e-12 NP_869306.1 PMID: 1448623 PMID: 1328152 best DB hits: BLAST: pir:I39786; H+-transporting ATP synthase (EC 3.6.1.34) C chain -; E=0.076 pir:JN0362; H+-transporting ATP synthase (EC 3.6.1.34) lipid-binding; E=0.36 swissprot:P26682; ATPL_ENTHR ATP SYNTHASE C CHAIN (LIPID-BINDING; E=0.38 PFAM: PF00137; ATP synthase subunit C; E=7.6e-07 NP_869307.1 PMID: 2521483 best DB hits: BLAST: swissprot:P20601; ATPF_BACME ATP SYNTHASE B CHAIN ----- pir:; E=7e-12 ddbj:BAB07477.1; (AP001519) ATP synthase subunit b [Bacillus; E=7e-11 gb:AAF22494.1; AF098522_4 (AF098522) F1F0-ATPase subunit b; E=1e-09 COG: BH3758; COG0711 F0F1-type ATP synthase b subunit; E=6e-12 PFAM: PF00430; ATP synthase B/B' CF(0); E=1.7e-28 NP_869308.1 PMID: 8363578 best DB hits: BLAST: ddbj:BAA23685.1; (AB006151) proton-translocating ATPase, delta; E=7e-14 gb:AAC64903.1; (AF008185) oligomycin sensitivity conferring; E=2e-12 pir:S36964; H+-transporting ATP synthase (EC 3.6.1.34) delta chain -; E=3e-12 COG: sll1325; COG0712 F0F1-type ATP synthase delta subunit (mitochondrial; E=6e-13 Rv1307_2; COG0712 F0F1-type ATP synthase delta subunit; E=6e-05 HI0482; COG0712 F0F1-type ATP synthase delta subunit (mitochondrial; E=6e-04 PFAM: PF00213; ATP synthase delta (OSCP) subunit; E=1e-33 NP_869309.1 produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit NP_869310.1 PMID: 1833620,7961438 best DB hits: BLAST: gb:AAG48362.1; AF330160_9 (AF330160) ATP synthase gamma subunit; E=1e-33 pir:C69592; H+-transporting ATP synthase (EC 3.6.1.34) gamma chain -; E=1e-33 swissprot:P37810; ATPG_BACSU ATP SYNTHASE GAMMA CHAIN -----; E=4e-33 COG: BS_atpG; COG0224 F0F1-type ATP synthase gamma subunit; E=1e-34 PFAM: PF00231; ATP synthase; E=2.7e-85 NP_869311.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit NP_869312.1 PMID: 2878921 PMID: 1533602 best DB hits: BLAST: gb:AAC35683.1; (AF041468) ATP synthase CF1 subunit e [Guillardia; E=8e-10 gb:AAF13019.1; AF022186_193 (AF022186) unknown; ATP synthase CF1; E=1e-09 swissprot:P06542; ATPE_ANASP ATP SYNTHASE EPSILON CHAIN -----; E=3e-09 COG: slr1330; COG0355 F0F1-type ATP synthase epsilon subunit; E=2e-06 atpC; COG0355 F0F1-type ATP synthase epsilon subunit (mitochondrial; E=0.008 PFAM: PF02823; ATP synthase, Delta/Epsilon cha; E=2.3e-16 NP_869314.1 PMID: 8905231 best DB hits: BLAST: pir:S76765; hypothetical protein - Synechocystis sp. (strain PCC; E=2e-12 pir:T51140; disease resistance protein RPS4 [imported] - Arabidopsis; E=0.13 pir:T51141; disease resistance protein rps4 [imported] - Arabidopsis; E=0.13 NP_869317.1 PMID: 9687406 best DB hits: BLAST: embl:CAB61226.1; (Y17305) hypothetical protein [Bacillus; E=0.13 NP_869318.1 PMID: 9537320 best DB hits: BLAST: pir:B70428; general secretion pathway protein E - Aquifex aeolicus; E=7e-21 pir:C75333; general secretion pathway protein E - Deinococcus; E=6e-19 pir:C83313; probable type II secretion protein PA2677 [imported] -; E=1e-18 COG: aq_1474; COG2804 Predicted ATPases involved in pili biogenesis, PilB; E=6e-22 PFAM: PF00437; Bacterial type II secretion system p; E=0.00098 NP_869319.1 PMID: 8100347 PMID: 1676385 best DB hits: BLAST: pir:F82321; twitching motility protein PilT VC0462 [imported] -; E=2e-65 pir:C70365; twitching motility protein PilT - Aquifex aeolicus; E=1e-63 swissprot:P24559; PILT_PSEAE TWITCHING MOBILITY PROTEIN -----; E=3e-61 COG: VC0462; COG2805 Predicted ATPases involved in pili biogenesis, PilT; E=1e-66 XF1517; COG2804 Predicted ATPases involved in pili biogenesis, PilB; E=2e-22 PFAM: PF00155; Aminotransferase class-I; E=0.3 PF00448; SRP54-type protein, GTPase do; E=0.32 PF00437; Bacterial type II secretion s; E=1.5e-34 NP_869320.1 PMID: 8987664 PMID: 9817849 PMID: 8987664 best DB hits: BLAST: pdb:1BRW; B Chain B, The Crystal Structure Of Pyrimidine; E=3e-70 swissprot:P77836; PDP_BACST PYRIMIDINE-NUCLEOSIDE PHOSPHORYLASE; E=3e-69 swissprot:O53366; DEOA_MYCTU THYMIDINE PHOSPHORYLASE (TDRPASE); E=1e-68 COG: Rv3314c; COG0213 Thymidine phosphorylase; E=1e-69 PFAM: PF02885; Glycosyl transferase,; E=1.4e-15 PF00591; Glycosyl transferase,; E=6.1e-39 NP_869321.1 PMID: 10336424 best DB hits: BLAST: gb:AAG58881.1; AE005599_13 (AE005599) sulfatase; E=5e-29 swissprot:P31447; YIDJ_ECOLI SULFATASE YIDJ -----; E=1e-28 pir:E83642; choline sulfatase PA0031 [imported] - Pseudomonas; E=1e-27 COG: yidJ; COG3119 Arylsulfatase A and related enzymes; E=1e-29 PAB0793; COG2194 Predicted membrane-associated, metal-dependent; E=9e-06 VNG1337C; COG3119 Arylsulfatase A and related enzymes; E=2e-04 PFAM: PF00884; Sulfatase; E=9.3e-36 NP_869322.1 best DB hits: BLAST: pir:G83172; hypothetical protein PA3783 [imported] - Pseudomonas; E=9e-28 pir:G69776; conserved hypothetical protein yddQ - Bacillus subtilis; E=9e-15 ddbj:BAB11178.1; (AB007648) gene_id:MKD15.9~pir C72413~similar to; E=2e-13 COG: PA3783; COG1335 Amidases related to nicotinamidase; E=9e-29 TM0133; COG1535 2,3-Dihydro-2,3 dihydroxybenzoate synthase; E=2e-06 AF2151; COG1335 Amidases related to nicotinamidase; E=2e-06 PFAM: PF00857; Isochorismatase; E=5.7e-11 NP_869325.1 PMID: 8016869 PMID: 9276481 best DB hits: BLAST: embl:CAA10745.1; (AJ132708) DnaJ1 protein [Anabaena sp.]; E=1e-39 swissprot:P50027; DNJH_SYNY3 DNAJ-LIKE PROTEIN SLR0093 -----; E=1e-39 embl:CAA10739.1; (AJ132704) DnaJ1 protein [Anabaena variabilis]; E=2e-39 COG: slr0093; COG2214 Molecular chaperones, DnaJ class; E=9e-41 TP0217; COG0484 Molecular chaperones (contain C-terminal Zn finger; E=2e-27 XF2233; COG2214 Molecular chaperones, DnaJ class; E=1e-26 PFAM: PF00226; DnaJ domain; E=3.6e-37 PF01556; DnaJ C terminal region; E=0.48 NP_869327.1 PMID: 3398051 PMID: 2026135 PMID: 8515812 best DB hits: BLAST: pir:C82615; haloalkane dehalogenase XF1965 [imported] - Xylella; E=2e-36 swissprot:Q50600; YJ33_MYCTU HYPOTHETICAL 32.2 KDA PROTEIN RV1833C; E=3e-23 pdb:1BEZ; Haloalkane Dehalogenase Mutant With Trp 175 Replaced; E=3e-19 COG: XF1965; COG0596 Predicted hydrolases or acyltransferases (alpha/beta; E=2e-37 Rv1833c; COG0596 Predicted hydrolases or acyltransferases; E=3e-24 Rv2579; COG0596 Predicted hydrolases or acyltransferases (alpha/beta; E=1e-16 PFAM: PF00561; alpha/beta hydrolase fold; E=3.5e-20 NP_869328.1 PMID: 9651254 PMID: 10215859 PMID: 10848995 PMID: 11073907 best DB hits: BLAST: gb:AAG32953.1; (AF032114) unknown [Methylobacterium extorquens]; E=2e-21 pir:D69199; conserved hypothetical protein MTH743 - Methanobacterium; E=6e-18 swissprot:Q57680; Y227_METJA HYPOTHETICAL PROTEIN MJ0227 -----; E=2e-16 COG: MTH743; COG1767 Uncharacterized ACR; E=5e-19 PFAM: PF01874; CitG family; E=1.9e-07 NP_869329.1 PMID: 9371463 best DB hits: BLAST: pir:D69109; serine proteinase HtrA - Methanobacterium; E=0.014 embl:CAA72164.1; (Y11304) ORF E0 [Rhodobacter capsulatus]; E=0.018 gb:AAF87931.1; AF163841_10 (AF163841) serine protease; E=0.041 COG: MTH1813; COG0265 Trypsin-like serine proteases, typically; E=0.001 PFAM: PF00595; PDZ domain (Also known as DHR; E=0.0018 NP_869330.1 best DB hits: BLAST: embl:CAA51674.1; (X73149) Nourseothricin acetyltransferase; E=0.069 gb:AAD47630.1; AF156670_1 (AF156670) nourseothricin; E=0.069 pir:E69786; ribosomal-protein-alanine N-acetyltransfer homolog ydiD; E=0.081 COG: BS_ydiD; COG0456 Acetyltransferases; E=0.008 PFAM: PF00583; Acetyltransferase (GNAT) family; E=7.9e-11 NP_869331.1 PMID: 10952301 best DB hits: BLAST: pir:A82318; conserved hypothetical protein VC0480 [imported] -; E=1e-37 swissprot:O52401; YGGB_EDWIC HYPOTHETICAL 30.6 KDA PROTEIN IN; E=2e-36 pir:B83096; conserved hypothetical protein PA4394 [imported] -; E=2e-31 COG: VC0480; COG0668 Small-conductance mechanosensitive channel; E=1e-38 HI0195.1; COG3264 Small-conductance mechanosensitive channel; E=2e-12 APE1441; COG0668 Small-conductance mechanosensitive channel; E=4e-12 PFAM: PF00924; Uncharacterized protein family UPF00; E=2.7e-52 NP_869333.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate NP_869334.1 PMID: 9211896 best DB hits: BLAST: swissprot:Q9WY93; CSRA_THEMA CARBON STORAGE REGULATOR HOMOLOG; E=8e-08 swissprot:P44879; CSRA_HAEIN CARBON STORAGE REGULATOR HOMOLOG; E=1e-07 gb:AAK03372.1; (AE006168) CsrA [Pasteurella multocida]; E=2e-07 COG: TM0251; COG1551 Carbon storage regulator (could also regulate; E=1e-08 PFAM: PF02599; Carbon storage regulator; E=3.6e-16 NP_869336.1 PMID: 10360571 PMID: 9384377 best DB hits: BLAST: swissprot:Q9X013; E2B_THEMA TRANSLATION INITIATION FACTOR; E=4e-73 swissprot:O31662; E2B_BACSU TRANSLATION INITIATION FACTOR; E=1e-68 swissprot:P74497; E2B_SYNY3 TRANSLATION INITIATION FACTOR; E=4e-68 COG: TM0911; COG0182 Translation initiation factor eIF-2B alpha subunit; E=4e-74 aq_2114_2; COG0182 Translation initiation factor eIF-2B alpha; E=5e-59 PH0702; COG0182 Translation initiation factor eIF-2B alpha subunit; E=8e-58 PFAM: PF01144; Coenzyme A transferase; E=0.17 PF01008; Initiation factor 2 subunit family; E=3.7e-112 NP_869337.1 best DB hits: BLAST: ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=7e-09 gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=3e-07 swissprot:Q54728; YJHC_STRPN HYPOTHETICAL PROTEIN IN NANB 3'REGION; E=5e-06 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=7e-10 PFAM: PF01408; Oxidoreductase, NAD-bindi; E=4.4e-17 NP_869338.1 best DB hits: BLAST: embl:CAB61608.1; (AL133210) hypothetical protein SCG11A.27c; E=2e-48 embl:CAA98817.1; (Z74285) ORF YDL237w [Saccharomyces cerevisiae]; E=6e-09 gb:AAF40431.1; (AF234680) activity-dependent neuroprotective; E=0.80 NP_869339.1 PMID: 8467787 PMID: 7588751 PMID: 8021167 best DB hits: BLAST: pir:S43324; zeta-carotene desaturase - Anabaena sp. (strain PCC; E=2e-82 swissprot:Q02861; CRTI_MYXXA PHYTOENE DEHYDROGENASE (PHYTOENE; E=5e-78 pir:T31463; probable diapophytoene dehydrogenase crtN -; E=5e-67 COG: VNG1684G; COG1233 Phytoene dehydrogenase and related proteins; E=7e-60 PFAM: PF01266; D-amino acid oxidase; E=0.0003 PF01494; FAD binding domain; E=9.7e-07 PF01946; Thi4 family; E=0.0015 NP_869340.1 PMID: 1698262 PMID: 1311386 PMID: 6296074 best DB hits: BLAST: pdb:1RBR; Ribonuclease H (E.C.3.1.26.4) Mutant With His 62; E=1e-36 pdb:1RBT; Ribonuclease H (E.C.3.1.26.4) Mutant With Lys 95; E=2e-36 pdb:1RBV; Ribonuclease H (E.C.3.1.26.4) Mutant With Lys 95; E=9e-36 COG: rnhA; COG0328 Ribonuclease HI; E=1e-36 PFAM: PF00075; RNase H; E=9.5e-48 NP_869341.1 best DB hits: BLAST: pir:B82680; pteridine reductase 1 XF1457 [imported] - Xylella; E=4e-27 swissprot:P50161; VER1_ASPPA VERSICOLORIN REDUCTASE (VER-1); E=8e-23 swissprot:Q08632; SDR1_PICAB SHORT-CHAIN TYPE; E=9e-22 COG: XF1457; COG1028 Dehydrogenases with different specificities (related; E=4e-28 PAB1085; COG1028 Dehydrogenases with different specificities; E=1e-20 BH1511; COG1028 Dehydrogenases with different specificities (related; E=2e-19 PFAM: PF00106; short chain dehydrogenase; E=3.1e-32 PF00678; Short chain dehydrogenase/reduct; E=0.0013 NP_869342.1 catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine NP_869344.1 PMID: 9387221 best DB hits: BLAST: ddbj:BAB06882.1; (AP001517) pyruvate kinase [Bacillus halodurans]; E=4e-82 swissprot:P80885; KPYK_BACSU PYRUVATE KINASE (PK) (VEGETATIVE; E=6e-80 swissprot:P51181; KPYK_BACLI PYRUVATE KINASE (PK) ----- pir:; E=1e-79 COG: BH3163_1; COG0469 Pyruvate kinase; E=4e-83 PFAM: PF00478; IMP dehydrogenase / GMP reductase C; E=0.0006 PF00224; Pyruvate kinase, barrel domain; E=9.5e-124 PF02887; Pyruvate kinase, alpha/beta domain; E=1.3e-06 NP_869345.1 PMID: 1863771 PMID: 10452954 best DB hits: BLAST: pir:A75436; heat shock protein, HSP20 family - Deinococcus; E=3e-20 pir:F82582; low molecular weight heat shock protein XF2234; E=4e-16 pir:D72385; heat shock protein, class I - Thermotoga maritima; E=2e-15 COG: DR1114; COG0071 Molecular chaperone (small heat shock protein); E=3e-21 PFAM: PF00011; Hsp20/alpha crystallin family; E=3.8e-22 NP_869346.1 PMID: 8423161 PMID: 8226695 best DB hits: BLAST: pir:F82582; low molecular weight heat shock protein XF2234; E=1e-11 swissprot:Q06823; SP21_STIAU SPORE PROTEIN SP21 ----- pir:; E=3e-11 embl:CAB99442.1; (AJ276218) HspA protein [Stigmatella aurantiaca]; E=3e-11 COG: XF2234; COG0071 Molecular chaperone (small heat shock protein); E=1e-12 PFAM: PF00011; Hsp20/alpha crystallin family; E=1.1e-20 NP_869348.1 PMID: 11481431 best DB hits: BLAST: pir:T36903; probable dihydropicolinate synthase - Streptomyces; E=0.41 gb:AAG18989.1; (AE004999) dihydrodipicolinate synthase; DapA; E=0.42 NP_869350.1 PMID: 10656583 NP_869351.1 PMID: 8144463 PMID: 9765566 PMID: 11297742 best DB hits: BLAST: swissprot:P55818; MTDA_METEX METHYLENETETRAHYDROFOLATE; E=2e-53 gb:AAD55895.1; AF139593_2 (AF139593) methylene; E=2e-18 gb:AAC27020.1; (AF032114) methylene tetrahydromethanopterin; E=3e-16 PFAM: PF02254; KTN NAD-binding domain; E=0.021 PF00106; short chain dehydrogenase; E=0.00046 NP_869352.1 best DB hits: BLAST: gb:AAB89943.1; (AE001014) D-arabino 3-hexulose 6-phosphate; E=4e-41 pir:D69063; conserved hypothetical protein MTH1474 -; E=2e-40 gb:AAG32954.1; (AF032114) formaldehyde-activating enzyme; E=1e-37 COG: AF1305_1; COG1795 Uncharacterized archaeal domain; E=4e-42 NP_869353.1 PMID: 9651254 PMID: 10215859 PMID: 10848995 PMID: 11073907 best DB hits: BLAST: gb:AAC27021.1; (AF032114) unknown [Methylobacterium extorquens]; E=0.029 embl:CAB92281.1; (AL356595) hypothetical protein [Streptomyces; E=0.43 pir:C83094; D-alanine--D-alanine ligase PA4410 [imported] -; E=0.62 PFAM: PF00826; Ribosomal L10; E=0.66 NP_869354.1 best DB hits: BLAST: gb:AAG19252.1; (AE005021) plastocyanin homology; Pcy; E=0.67 NP_869355.1 PMID: 11474104 NP_869356.1 PMID: 9464392 best DB hits: BLAST: pir:T03500; hypothetical protein - Rhodobacter capsulatus -----; E=1e-70 ddbj:BAA24794.1; (AB001577) low specificity L-threonine aldolase; E=5e-61 gb:AAD42401.1; AF157493_9 (AF157493) low specificity L-threonine; E=2e-59 COG: PA5413; COG2008 Threonine aldolase; E=9e-59 NP_869357.1 PMID: 9823893 PMID: 10984043 best DB hits: BLAST: pir:A71678; probable response regulatory protein RP237 - Rickettsia; E=2e-21 pir:A82428; sensory boxGGDEF family protein VCA0697 [imported] -; E=6e-21 pir:E83183; probable two-component response regulator PA3702; E=1e-20 COG: VCA0697_3; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=6e-22 PFAM: PF00072; Response regulator receiver doma; E=5.4e-17 PF00990; GGDEF domain; E=7.2e-44 NP_869358.1 PMID: 9647823 PMID: 9076741 best DB hits: BLAST: ddbj:BAA31873.1; (AB009593) xylose transporter [Tetragenococcus; E=1e-67 embl:CAA96096.1; (Z71474) xylose permease [Bacillus megaterium]; E=5e-60 swissprot:P09098; XYLE_ECOLI D-XYLOSE-PROTON SYMPORTER (D-XYLOSE; E=2e-57 COG: xylE; COG0477 Permeases of the major facilitator superfamily; E=2e-58 PFAM: PF00083; Sugar (and other) transporter; E=1.2e-118 NP_869359.1 PMID: 7690854 best DB hits: BLAST: pir:H81796; NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain M; E=1e-15 pir:E81220; NADH dehydrogenase I, M chain NMB0258 [imported] -; E=4e-15 swissprot:Q9ZCG0; NUOM_RICPR NADH DEHYDROGENASE I CHAIN M; E=3e-14 COG: NMB0258; COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); E=4e-16 PH1431; COG0651 Formate hydrogenlyase subunit 3; E=6e-13 HP1272; COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); E=3e-12 PFAM: PF00361; NADH-Ubiquinone/plastoquinone (co; E=2e-07 NP_869360.1 PMID: 3035337 best DB hits: BLAST: gb:AAG09461.1; AF217811_11 (AF217811) NADH subunit 5 [Tupaia; E=3e-29 swissprot:P50368; NU5M_SCHCO NADH-UBIQUINONE OXIDOREDUCTASE CHAIN; E=4e-29 embl:CAA50887.1; (X72004) NADH-ubiquinone oxidoreductase subunit; E=1e-28 COG: slr0844; COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L); E=3e-29 PAB1402; COG0651 Formate hydrogenlyase subunit 3; E=4e-17 sll1732; COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L); E=1e-16 PFAM: PF00662; NADH-Ubiquinone oxidoreductase; E=0.41 PF00361; NADH-Ubiquinone/plastoquinone (; E=1.2e-36 NP_869361.1 PMID: 9537320 best DB hits: BLAST: pir:G70374; hypothetical protein aq_863 - Aquifex aeolicus -----; E=6e-49 pir:H82182; conserved hypothetical protein VC1582 [imported] - Vibrio; E=8e-46 pir:E69745; hypothetical protein ybcD - Bacillus subtilis -----; E=1e-39 COG: aq_863; COG3002 Uncharacterized BCR; E=6e-50 PFAM: PF02873; UDP-N-acetylenolpyruvoylglucosamine; E=0.038 NP_869363.1 PMID: 10086841 PMID: 10086842 PMID: 10192928 best DB hits: BLAST: ddbj:BAB05639.1; (AP001513) two-component sensor histidine kinase; E=5e-22 swissprot:Q06067; ATOS_ECOLI SENSOR PROTEIN ATOS ----- pir:; E=1e-21 pir:S70528; sensor protein pilS - Myxococcus xanthus ----- gb:; E=2e-21 COG: BH1920; COG0642 Sensory transduction histidine kinases; E=5e-23 PFAM: PF00785; PAC motif; E=0.099 PF00512; His Kinase A (phosphoacceptor) doma; E=7.9e-10 PF02518; Histidine kinase-, DNA gyrase B-, p; E=1.1e-33 NP_869364.1 PMID: 9278503 PMID: 9097040 PMID: 8346225 best DB hits: BLAST: swissprot:Q06065; ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY; E=6e-93 pir:F71315; probable response regulatory protein (atoC) - syphilis; E=7e-93 gb:AAF33506.1; (AF170176) Salmonella typhimurium transcriptional; E=3e-89 COG: atoC; COG2204 AAA superfamily ATPases with N-terminal receiver; E=5e-94 PFAM: PF00072; Response regulator receiver doma; E=1.5e-34 PF00158; Sigma-54 interaction domain; E=1.2e-133 NP_869366.1 best DB hits: BLAST: pir:D83631; probable sulfate transporter PA0103 [imported] -; E=6e-41 pir:B70979; hypothetical protein Rv3273 - Mycobacterium tuberculosis; E=2e-37 pir:T36683; probable integral membrane protein - Streptomyces; E=7e-31 COG: PA0103; COG0659 Sulfate permease and related transporters (MFS; E=6e-42 PFAM: PF00916; Sulfate transporter family; E=5.9e-11 NP_869367.1 best DB hits: BLAST: swissprot:O26118; SUI1_METTH PROTEIN TRANSLATION FACTOR SUI1; E=2e-09 swissprot:Q57902; SUI1_METJA PROTEIN TRANSLATION FACTOR SUI1; E=5e-09 pir:H72542; hypothetical protein APE1629 - Aeropyrum pernix (strain; E=7e-09 COG: MTH10; COG0023 Translation initiation factor (SUI1); E=2e-10 PFAM: PF01253; Translation initiation factor SUI1; E=1.8e-12 NP_869368.1 PMID: 10567266 PMID: 10086841 best DB hits: BLAST: pir:H75538; conserved hypothetical protein - Deinococcus radiodurans; E=1e-17 ddbj:BAB05098.1; (AP001511) BH1379~unknown conserved protein; E=4e-13 swissprot:P54471; YQFN_BACSU HYPOTHETICAL 23.7 KD PROTEIN IN; E=3e-12 COG: DR0276; COG2384 Predicted SAM-dependent methyltransferase; E=1e-18 NP_869369.1 best DB hits: BLAST: pir:T36501; probable serinethreonine protein kinase - Streptomyces; E=2e-32 swissprot:P71584; PKNB_MYCTU SERINETHREONINE-PROTEIN; E=4e-32 swissprot:P54744; PKNB_MYCLE SERINETHREONINE-PROTEIN; E=5e-31 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=4e-33 PA5360; COG0745 Response regulators consisting of a CheY-like; E=9e-17 VC0622_4; COG0784 CheY-like receiver domains; E=2e-16 PFAM: PF00072; Response regulator receiver doma; E=6e-29 PF00069; Protein kinase domain; E=6.7e-52 NP_869370.1 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=3e-69 pir:E83443; probable sensorresponse regulator hybrid PA1611; E=2e-56 pir:H83132; probable sensorresponse regulator hybrid PA4112; E=1e-52 COG: PA4982; COG0642 Sensory transduction histidine kinases; E=4e-49 PFAM: PF00512; His Kinase A (phosphoacceptor) d; E=1.3e-22 PF02518; Histidine kinase-, DNA gyrase B-; E=8e-46 PF00072; Response regulator receiver doma; E=6.2e-33 NP_869372.1 best DB hits: BLAST: pir:T42076; protein kinase homolog - Streptomyces coelicolor -----; E=5e-18 pir:T42077; protein kinase homolog - Streptomyces coelicolor -----; E=1e-16 pir:T35491; probable serinethreonine-specific protein kinase pkaF -; E=1e-16 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=3e-15 PFAM: PF00069; Protein kinase domain; E=3.2e-06 NP_869373.1 PMID: 9882662 best DB hits: BLAST: swissprot:O31751; UPPS_BACSU UNDECAPRENYL PYROPHOSPHATE SYNTHETASE; E=4e-51 pir:F82099; undecaprenyl diphosphate synthase VC2256 [imported] -; E=3e-50 gb:AAB08603.1; (U70214) hypothetical protein [Escherichia coli]; E=3e-50 COG: BS_yluA; COG0020 Undecaprenyl pyrophosphate synthase; E=4e-52 PFAM: PF01255; undecaprenyl diphosph; E=2.1e-100 NP_869374.1 PMID: 9748431 PMID: 1699845 best DB hits: BLAST: swissprot:P21296; FLBA_CAUCR FLBA PROTEIN ----- gb: AAC62523.1; E=2e-19 swissprot:P56558; OGT1_RAT UDP-N-ACETYLGLUCOSAMINE--PEPTIDE; E=5e-11 embl:CAA76834.1; (Y17720) SPINDLY protein [Petunia x hybrida]; E=8e-11 COG: aq_2197; COG0457 TPR-repeat-containing proteins; E=2e-09 PFAM: PF00515; TPR Domain; E=5.6e-07 NP_869375.1 PMID: 2110143 best DB hits: BLAST: swissprot:P56835; RPSD_CHLMU RNA POLYMERASE SIGMA FACTOR RPOD; E=5e-80 swissprot:P18333; RPSD_CHLTR RNA POLYMERASE SIGMA FACTOR RPOD; E=6e-80 pir:RNCW7H; transcription initiation factor sigma 70 - Chlamydia; E=6e-80 COG: CT615; COG0568 DNA-directed RNA polymerase sigma subunits; E=6e-81 PFAM: PF00140; Sigma-70 factor; E=6.7e-109 NP_869381.1 best DB hits: BLAST: gb:AAK04327.1; AE006260_10 (AE006260) HYPOTHETICAL PROTEIN; E=0.003 gb:AAC68678.1; (AF079762) N,N-dimethyltransferase [Streptomyces; E=0.052 pir:G75136; menaquinone biosynthesis methlytransferase related; E=0.13 NP_869383.1 best DB hits: BLAST: pir:H82154; conserved hypothetical protein VC1812 [imported] -; E=6e-04 gb:AAF87148.1; AC002423_13 (AC002423) T23E23.25 [Arabidopsis; E=0.20 COG: VC1812; COG3011 Uncharacterized BCR; E=6e-05 NP_869387.1 best DB hits: BLAST: pir:F83592; conserved hypothetical protein PA0419 [imported] -; E=2e-13 gb:AAK03952.1; (AE006224) unknown [Pasteurella multocida]; E=4e-12 pir:A65080; hypothetical protein in endA-gshB intergenic region -; E=1e-10 COG: PA0419; COG1385 Uncharacterized BCR; E=2e-14 NP_869390.1 best DB hits: BLAST: pir:H69181; hypothetical protein MTH616 - Methanobacterium; E=5e-30 pir:H69125; hypothetical protein MTH210 - Methanobacterium; E=2e-29 gb:AAC48226.1; (AF006826) N-ethylmaleimide-sensitive fusion; E=0.21 COG: MTH616; COG0606 Predicted ATPases; E=5e-31 PFAM: PF00004; ATPase associated with variou; E=1.9e-06 PF01202; Shikimate kinase; E=0.31 NP_869391.1 best DB hits: BLAST: pir:C70986; probable serinethreonine protein kinase (EC 2.7.1.-) -; E=1e-17 embl:CAB66178.1; (AL136500) probable serinethreonine protein; E=1e-15 swissprot:Q10697; PKNJ_MYCTU PROBABLE SERINETHREONINE-PROTEIN; E=6e-15 COG: Rv1746; COG0515 Serine/threonine protein kinases; E=1e-18 PFAM: PF00069; Protein kinase domain; E=3.8e-28 NP_869392.1 PMID: 8969498 best DB hits: BLAST: swissprot:P54607; YHCW_BACSU HYPOTHETICAL 24.7 KD PROTEIN IN; E=6e-15 ref:XP_010289.2; DNA segment, numerous copies, expressed probes; E=9e-14 gb:AAA58622.1; (M86934) Gene from Xp22.3 which escapes; E=4e-13 COG: BS_yhcW; COG0637 Predicted phosphatase/phosphohexomutase; E=6e-16 gph; COG0546 Predicted phosphatases; E=6e-08 PA2067; COG0637 Predicted phosphatase/phosphohexomutase; E=8e-08 PFAM: PF00702; haloacid dehalogenase-like hydrolas; E=2.1e-26 NP_869393.1 PMID: 10688204 best DB hits: BLAST: pir:B81282; probable integral membrane protein Cj1373 [imported] -; E=5e-09 COG: Cj1373; COG1033 Membrane proteins related to SecD/SecF; E=5e-10 NP_869394.1 PMID: 10984043 PMID: 2121716 best DB hits: BLAST: pir:A83077; prolipoprotein signal peptidase PA4559 [imported] -; E=3e-05 swissprot:P17942; LSPA_PSEFL LIPOPROTEIN SIGNAL PEPTIDASE; E=3e-04 embl:CAA11250.1; (AJ223309) SPase II [Myxococcus xanthus]; E=5e-04 COG: PA4559; COG0597 Lipoprotein signal peptidase; E=3e-06 PFAM: PF01252; Signal peptidase (SPase) II; E=0.043 NP_869395.1 PMID: 2137818 PMID: 3280308 best DB hits: BLAST: swissprot:P08058; THIO_RHOSH THIOREDOXIN (TRX) ----- pir:; E=8e-17 swissprot:P43785; THIO_HAEIN THIOREDOXIN (TRX) ----- pir:; E=2e-14 swissprot:P00275; THI1_CORNE THIOREDOXIN C-1 ----- pir: TXFK; E=1e-13 COG: HI0084; COG0526 Thiol-disulfide isomerase and thioredoxins; E=2e-15 XF2174; COG3118 Thioredoxin domain-containing protein; E=2e-10 PA5240; COG0526 Thiol-disulfide isomerase and thioredoxins; E=2e-10 PFAM: PF00085; Thioredoxin; E=1.1e-24 NP_869399.1 best DB hits: PFAM: PF01090; Ribosomal protein S19e; E=0.077 NP_869400.1 best DB hits: BLAST: ddbj:BAB06223.1; (AP001515) serinethreonine protein kinase; E=4e-28 pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=1e-27 embl:CAA73979.1; (Y13639) protein kinase [Staphylococcus aureus]; E=5e-27 COG: BH2504_1; COG0515 Serine/threonine protein kinases; E=3e-29 PFAM: PF00069; Protein kinase domain; E=4.6e-52 NP_869402.1 best DB hits: BLAST: embl:CAC20842.1; (AJ250467) receptor protein kinase [Pinus; E=6e-04 pir:T10659; probable serinethreonine-specific protein kinase (EC; E=0.019 embl:CAB95344.1; (AL359782) possible adenylate cyclase; E=0.081 NP_869403.1 PMID: 10074426 best DB hits: BLAST: ddbj:BAA91571.1; (AK001235) unnamed protein product [Homo; E=3e-51 gb:AAD17300.1; (AF125181) single-strand selective monofunctional; E=1e-50 gb:AAF55400.1; (AE003716) CG5285 gene product [Drosophila; E=5e-33 NP_869406.1 best DB hits: BLAST: gb:AAB89578.1; (AE000988) coenzyme F390 synthetase (ftsA-2); E=6e-37 pir:A69082; coenzyme F390 synthetase III - Methanobacterium; E=2e-36 pir:B69115; coenzyme F390 synthetase II - Methanobacterium; E=7e-36 COG: AF1671; COG1541 Coenzyme F390 synthetase; E=6e-38 NP_869408.1 PMID: 8606192 PMID: 9045821 best DB hits: BLAST: gb:AAB49431.1; (U73374) Cap8B [Staphylococcus aureus]; E=6e-19 gb:AAC46085.1; (U81973) Cap5B [Staphylococcus aureus]; E=1e-18 ddbj:BAB07387.1; (AP001519) capsular polysaccharide biosynthesis; E=2e-18 COG: BH3668; COG0489 ATPases involved in chromosome partitioning; E=2e-19 MJ0547; COG0455 ATPases involved in chromosome partitioning; E=1e-04 PFAM: PF00142; 4Fe-4S iron sulfur cluster bindin; E=0.68 NP_869409.1 best DB hits: BLAST: pir:F70345; polysaccharide biosynthesis protein - Aquifex aeolicus; E=0.16 NP_869414.1 best DB hits: BLAST: gb:AAB89163.1; (AE000959) conserved hypothetical protein; E=6e-09 PFAM: PF00082; Subtilase; E=5e-12 NP_869415.1 PMID: 9294005 best DB hits: BLAST: embl:CAA72323.1; (Y11564) xylanase [Rhodothermus marinus]; E=2e-06 embl:CAA60868.1; (X87417) xylanase [Rhodothermus marinus]; E=2e-06 pir:B72423; endo-1,4-beta-xylanase B - Thermotoga maritima (strain; E=4e-06 COG: sll0656_1; COG3204 Uncharacterized BCR; E=6e-06 XF0845; COG1472 Beta-glucosidase-related glycosidases; E=0.008 PFAM: PF00404; Dockerin type I repeat; E=0.49 PF02369; Bacterial Ig-like domain (group 1); E=0.16 NP_869418.1 PMID: 9406417 best DB hits: BLAST: pir:T18266; cycloinulo-oligosaccharide fructanotransferase (EC; E=4e-05 gb:AAG47946.1; AF222787_1 (AF222787) cycloinulo-oligosaccharide; E=5e-04 pir:E82410; hypothetical protein VCA0849 [imported] - Vibrio cholerae; E=0.016 PFAM: PF00801; PKD domain; E=0.36 PF00404; Dockerin type I repeat; E=0.17 NP_869420.1 best DB hits: BLAST: gb:AAC44056.1; (U51197) unknown [Sphingomonas sp. S88]; E=1e-12 pir:H75097; polysaccharide biosynthesis related protein PAB0783 -; E=4e-05 COG: PAB0783; COG2244 Membrane protein involved in the export of; E=3e-06 PFAM: PF01943; Polysaccharide biosynthesis pro; E=0.02 NP_869421.1 PMID: 11481431 NP_869424.1 best DB hits: BLAST: pir:A75597; mannosyltransferase - Deinococcus radiodurans (strain; E=3e-34 pir:I76776; Mannosyltransferase (EC 5.-.-.-) B - Escherichia coli; E=1e-27 gb:AAF04384.1; AF189151_7 (AF189151) WbdB; mannosyl transferase B; E=1e-27 COG: DRA0039; COG0438 Predicted glycosyltransferases; E=3e-35 PFAM: PF00534; Glycosyl transferases group 1; E=3.4e-29 NP_869425.1 PMID: 10978535 best DB hits: BLAST: pir:S22620; hypothetical protein 18.9 - Salmonella choleraesuis; E=7e-55 ddbj:BAB03210.1; (AB046360) glycosyltransferase; E=4e-53 ddbj:BAA94399.1; (AB041266) mannosyl transferase [Actinobacillus; E=2e-52 COG: DRA0040; COG0438 Predicted glycosyltransferases; E=1e-50 PFAM: PF00534; Glycosyl transferases group 1; E=2.4e-29 NP_869426.1 PMID: 7596293 best DB hits: BLAST: swissprot:Q57491; Y872_HAEIN HYPOTHETICAL SUGAR TRANSFERASE HI0872; E=3e-56 swissprot:Q46628; AMSG_ERWAM UDP-GALACTOSE-LIPID CARRIER; E=5e-56 pir:S61891; undecaprenyl-phosphate galactosephosphotransferase (EC; E=5e-56 COG: HI0872; COG2148 Sugar transferases involved in lipopolysaccharide; E=2e-57 PFAM: PF00895; ATP synthase 8; E=0.37 PF02397; Bacterial sugar transferase; E=3.6e-89 NP_869429.1 best DB hits: BLAST: swissprot:P42349; YC42_SYNY3 HYPOTHETICAL METHYLTRANSFERASE; E=1e-97 swissprot:Q55914; Y309_SYNY3 HYPOTHETICAL METHYLTRANSFERASE; E=2e-28 swissprot:O58549; Y819_PYRHO HYPOTHETICAL METHYLTRANSFERASE PH0819; E=3e-18 COG: sll1242; COG1032 Fe-S oxidoreductases family 2; E=9e-99 NP_869431.1 best DB hits: BLAST: ddbj:BAA89384.1; (AB025342) ORF10 [Moritella marina]; E=3e-37 pir:T30185; hypothetical protein 7 - Shewanella sp ----- gb:; E=3e-36 pir:T37057; probable multi-domain beta keto-acyl synthase -; E=8e-35 COG: DR1945; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=3e-17 Rv3391_1; COG0451 Nucleoside-diphosphate-sugar epimerases; E=2e-14 BH2492; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=2e-13 PFAM: PF00109; Beta-ketoacyl synthase, N-ter; E=7.7e-09 PF02801; Beta-ketoacyl synthase, C-ter; E=7.6e-61 PF00109; Beta-ketoacyl synthase, N-ter; E=3.6e-21 NP_869432.1 best DB hits: BLAST: pir:G70946; probable dioxygenase (EC 1.14.-.-) Rieske iron-sulfur; E=3e-18 pir:T14542; choline monooxygenase - beet ----- gb: AAB80954.1; E=2e-15 pir:G83331; anthranilate dioxygenase large subunit PA2512 [imported]; E=4e-14 COG: Rv3161c; COG2146 Ferredoxin subunits of nitrite reductase and; E=3e-19 PFAM: PF00355; Rieske [2Fe-2S] domain; E=1.8e-21 NP_869433.1 PMID: 8955309 PMID: 10973220 best DB hits: BLAST: gb:AAC44655.1; (U72144) 1-cyclohexenylcarbonyl CoA reductase; E=4e-40 pir:B69802; glucose 1-dehydrogenase homolog yfhR - Bacillus subtilis; E=4e-37 ddbj:BAB04657.1; (AP001510) glucose 1-dehydrogenase [Bacillus; E=2e-34 COG: BS_yfhR; COG1028 Dehydrogenases with different specificities; E=4e-38 BH0938; COG1028 Dehydrogenases with different specificities (related; E=2e-35 BS_fabG; COG1028 Dehydrogenases with different specificities; E=3e-26 PFAM: PF00106; short chain dehydrogenase; E=8.7e-45 PF00678; Short chain dehydrogenase/reduct; E=0.0016 NP_869435.1 PMID: 7541909 best DB hits: BLAST: ddbj:BAA08402.1; (D49424) RNA-binding protein [Anabaena; E=4e-16 pir:S58673; RNA-binding protein RbpC - Anabaena variabilis; E=4e-16 pir:S77263; RNA-binding protein ssr1480 - Synechocystis sp. (strain; E=1e-15 COG: ssr1480; COG0724 RNA-binding proteins (RRM domain); E=1e-16 PFAM: PF00076; RNA recognition motif. (a.k.a. RRM,; E=2.9e-31 NP_869436.1 PMID: 1459957 PMID: 8288631 best DB hits: BLAST: ddbj:BAB04923.1; (AP001511) protoporphyrinogen IX and; E=2e-46 swissprot:P32397; PPOX_BACSU PROTOPORPHYRINOGEN OXIDASE (PPO); E=9e-41 swissprot:P56601; PPOX_MYXXA PROTOPORPHYRINOGEN OXIDASE (PPO); E=8e-39 COG: BH1204; COG1232 Protoporphyrinogen oxidase; E=1e-47 PFAM: PF01494; FAD binding domain; E=0.64 PF01266; D-amino acid oxidase; E=0.00034 PF00221; Phenylalanine and histidine amm; E=0.39 NP_869439.1 PMID: 8449868 PMID: 7961651 PMID: 9149148 best DB hits: BLAST: swissprot:P28861; FENR_ECOLI FERREDOXIN--NADP REDUCTASE (FNR); E=3e-10 pdb:1FDR; Flavodoxin Reductase From E. Coli; E=3e-10 pir:F82624; ferredoxin-NADP reductase XF1889 [imported] - Xylella; E=5e-10 COG: fpr; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases); E=3e-11 slr1643; COG0369 Sulfite reductase flavoprotein subunit; E=0.005 PFAM: PF00970; Oxidoreductase FAD-binding doma; E=0.015 PF00175; Oxidoreductase FAD/NAD-binding; E=1.2e-06 NP_869440.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate NP_869441.1 PMID: 7806516 best DB hits: BLAST: gb:AAF98278.1; AF197933_8 (AF197933) beta-hydroxyacyl-ACP; E=1e-05 pir:H81661; (3R)-hydroxymyristol-(acyl carrier protein) dehydratase; E=4e-05 pir:B33171; hypothetical 17K protein (lpxA 5' region) - Escherichia; E=5e-05 COG: fabZ; COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier; E=5e-06 PFAM: PF01377; Thioester dehydrase; E=1.3e-15 NP_869442.1 PMID: 3037488 PMID: 1909328 best DB hits: BLAST: pir:A70121; probable translation initiation factor IF-1 - Lyme; E=1e-20 swissprot:O83135; IF1_TREPA TRANSLATION INITIATION FACTOR IF-1; E=3e-20 swissprot:O51191; IF1_BORBU TRANSLATION INITIATION FACTOR IF-1; E=3e-20 COG: BB0169; COG0361 Translation initiation factor IF-1; E=1e-21 PFAM: PF00575; S1 RNA binding domain; E=1.1e-07 NP_869443.1 PMID: 3884974 PMID: 1091515 best DB hits: BLAST: swissprot:P02363; RS9_ECOLI 30S RIBOSOMAL PROTEIN S9 -----; E=1e-22 gb:AAK02605.1; (AE006087) RpS9 [Pasteurella multocida]; E=5e-22 pir:C82308; ribosomal protein S9 VC0571 [imported] - Vibrio cholerae; E=2e-21 COG: rpsI; COG0103 Ribosomal protein S9; E=1e-23 PFAM: PF00380; Ribosomal protein S9/S16; E=7.2e-51 NP_869444.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit NP_869446.1 best DB hits: BLAST: pir:D71687; alkaline proteinase secretion protein apre (aprE) RP314; E=0.032 pir:E82263; conserved hypothetical protein VC0913 [imported] -; E=0.053 gb:AAK03081.1; (AE006139) unknown [Pasteurella multocida]; E=0.13 COG: RP314; COG0845 Membrane-fusion protein; E=0.003 PFAM: PF01590; GAF domain; E=0.00029 PF00364; Biotin-requiring enzyme; E=0.0022 NP_869447.1 best DB hits: BLAST: pir:E82436; AcrAAcrE family protein VCA0639 [imported] - Vibrio; E=7e-04 pir:C70415; cation efflux system (czcB-like) - Aquifex aeolicus; E=0.040 pir:D83099; probable RND efflux membrane fusion protein precursor; E=0.50 COG: VCA0639; COG0845 Membrane-fusion protein; E=6e-05 PFAM: PF00364; Biotin-requiring enzyme; E=0.0048 PF00529; HlyD family secretion protein; E=0.0018 NP_869448.1 best DB hits: BLAST: pir:F70091; hypothetical protein yydH - Bacillus subtilis -----; E=2e-06 pir:H70326; hypothetical protein aq_294 - Aquifex aeolicus -----; E=0.29 PFAM: PF02163; Sterol-regulatory element bindi; E=0.039 NP_869451.1 PMID: 3027506 PMID: 3027506 best DB hits: BLAST: gb:AAA24517.1; (M30198) recQ [Escherichia coli]; E=2e-78 gb:AAA67618.1; (M87049) DNA-dependent ATPase, DNA helicase; E=2e-78 pir:BVECRQ; DNA helicase recQ - Escherichia coli (strain K-12); E=2e-78 COG: recQ; COG0514 Superfamily II DNA helicase; E=2e-79 PFAM: PF00270; DEAD/DEAH box helicase; E=2.7e-39 PF00271; Helicase conserved C-terminal doma; E=2.1e-28 NP_869452.1 PMID: 20572072 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=3e-67 pir:E83443; probable sensorresponse regulator hybrid PA1611; E=2e-64 pir:H82211; sensory box sensor histidine kinaseresponse regulator; E=8e-61 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=7e-62 PFAM: PF00785; PAC motif; E=0.00076 PF00512; His Kinase A (phosphoacceptor) d; E=1.6e-28 PF02518; Histidine kinase-, DNA gyrase B-; E=1.6e-42 NP_869453.1 best DB hits: BLAST: pir:G82805; two-component system, regulatory protein XF0450; E=5e-09 swissprot:P43501; PILH_PSEAE PILH PROTEIN ----- pir: S40035; E=3e-08 pir:F82618; chemotaxis-related protein kinase XF1952 [imported] -; E=6e-08 COG: XF0450; COG0784 CheY-like receiver domains; E=5e-10 PA2798; COG2204 AAA superfamily ATPases with N-terminal receiver; E=6e-08 BH1910_1; COG0784 CheY-like receiver domains; E=2e-07 PFAM: PF00072; Response regulator receiver doma; E=5.7e-25 NP_869454.1 best DB hits: BLAST: gb:AAC15080.1; (L37087) HrmA [Nostoc sp.]; E=5e-25 pir:E72377; conserved hypothetical protein - Thermotoga maritima; E=5e-23 NP_869456.1 PMID: 8021172 best DB hits: BLAST: swissprot:P40924; PGK_BACSU PHOSPHOGLYCERATE KINASE ----- pir:; E=3e-96 swissprot:O52632; PGK_CLOAB PHOSPHOGLYCERATE KINASE ----- gb:; E=4e-96 swissprot:P29409; PGKH_SPIOL PHOSPHOGLYCERATE KINASE, CHLOROPLAST; E=2e-93 COG: BS_pgk; COG0126 3-phosphoglycerate kinase; E=3e-97 PFAM: PF00162; Phosphoglycerate kinase; E=8.3e-186 NP_869458.1 best DB hits: BLAST: pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=7e-09 ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=2e-07 gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=2e-06 COG: TM0585; COG0673 Predicted dehydrogenases and related proteins; E=7e-10 PFAM: PF01118; Semialdehyde dehydrogenase, NA; E=0.37 PF01408; Oxidoreductase, NAD-bin; E=6e-09 PF02894; Oxidoreductase, C-termi; E=0.52 NP_869459.1 PMID: 8955399 best DB hits: BLAST: gb:AAC44671.1; (U66897) alpha-glucosidase [Bacteroides; E=4e-42 PFAM: PF01729; Quinolinate phosphoribosyl transfera; E=0.71 NP_869460.1 best DB hits: BLAST: pir:F83378; hypothetical protein PA2141 [imported] - Pseudomonas; E=7e-08 pir:B82935; conserved hypothetical UU083 [imported] - Ureaplasma; E=9e-08 pir:G71875; hypothetical protein jhp0886 - Helicobacter pylori; E=2e-07 COG: PA2141; COG1546 Uncharacterized protein (competence- and; E=7e-09 PFAM: PF02464; Competence-damaged protein; E=8.7e-13 NP_869461.1 PMID: 9126287 best DB hits: BLAST: swissprot:Q49885; KCY_MYCLE CYTIDYLATE KINASE (CK) (CYTIDINE; E=2e-30 swissprot:Q9RC80; KCY_BACHD CYTIDYLATE KINASE (CK) (CYTIDINE; E=5e-30 pir:S75604; pantothenate synthetase panC - Synechocystis sp. (strain; E=3e-29 COG: BH1634; COG0283 Cytidylate kinase; E=5e-31 PFAM: PF02223; Thymidylate kinase; E=0.42 PF00485; Phosphoribulokinase / Uridine; E=0.094 PF01202; Shikimate kinase; E=3.5e-05 NP_869462.1 best DB hits: BLAST: pir:A75496; conserved hypothetical protein - Deinococcus radiodurans; E=1e-12 pir:F83287; hypothetical protein PA2873 [imported] - Pseudomonas; E=8e-11 pir:F70464; hypothetical protein aq_1912 - Aquifex aeolicus -----; E=1e-10 COG: DR0620_2; COG1305 transglutaminases, cysteine; E=2e-13 PFAM: PF01841; Transglutaminase-like superfam; E=3e-17 NP_869463.1 best DB hits: BLAST: pir:H71125; hypothetical protein PH0774 - Pyrococcus horikoshii; E=6e-06 pir:T34965; probable membrane protein - Streptomyces coelicolor; E=7e-05 pir:A75012; conserved hypothetical protein PAB1277 - Pyrococcus; E=1e-04 COG: PH0774; COG1721 Uncharacterized ACR; E=5e-07 PFAM: PF01882; Protein of unknown function DUF58; E=5.4e-20 NP_869464.1 best DB hits: BLAST: pir:C69791; methanol dehydrogenase regulation homolog yeaC -; E=4e-73 ddbj:BAB04323.1; (AP001509) methanol dehydrogenase regulatory; E=6e-73 pir:S75782; methanol dehydrogenase regulatory protein -; E=3e-70 COG: BS_yeaC; COG0714 MoxR-like ATPases; E=4e-74 PFAM: PF00004; ATPase associated with; E=5.2e-06 PF01078; Magnesium chelatase, subunit; E=3.4e-13 NP_869466.1 best DB hits: BLAST: pir:F81236; DNA processing chain A NMB0116 [imported] - Neisseria; E=5e-47 pir:C82009; DprA homolog NMA0158 [imported] - Neisseria meningitidis; E=4e-46 pir:G82369; smf protein VC0048 [imported] - Vibrio cholerae (group; E=8e-44 COG: NMB0116; COG0758 Predicted Rossmann-fold nucleotide-binding protein; E=5e-48 PFAM: PF00633; Helix-hairpin-helix motif.; E=0.15 PF02481; SMF family; E=2.4e-83 NP_869468.1 best DB hits: BLAST: pir:D82995; conserved hypothetical protein PA5201 [imported] -; E=9e-17 pir:T35268; probable transcription accessory protein - Streptomyces; E=3e-16 gb:AAK03532.1; (AE006181) unknown [Pasteurella multocida]; E=3e-15 COG: PA5201; COG2183 Predicted RNA binding protein, contains S1 domain; E=8e-18 PFAM: PF00575; S1 RNA binding domain; E=7.3e-15 NP_869471.1 best DB hits: BLAST: pir:A82193; Sunnucleolar protein family protein VC1502 [imported] -; E=3e-23 gb:AAG56825.1; AE005406_4 (AE005406) nucleolar proteins; E=2e-21 pir:C64945; probable rRNA methylase yebU - Escherichia coli -----; E=5e-21 COG: yebU_1; COG0144 tRNA and rRNA cytosine-C5-methylases; E=5e-22 PFAM: PF01189; NOL1/NOP2/sun family; E=1.1e-24 NP_869473.1 PMID: http://us.expasy.org/cgi-bin/niceprot.pl?P28016 best DB hits: BLAST: ddbj:BAB03783.1; (AP001507) stage V sporulation protein G; E=3e-11 swissprot:P28016; SP5G_BACME STAGE V SPORULATION PROTEIN G -----; E=8e-10 swissprot:P28015; SP5G_BACSU STAGE V SPORULATION PROTEIN G -----; E=1e-09 COG: BH0064; COG2088 Uncharacterized protein, involved in the regulation; E=3e-12 BS_spoVG; COG2088 Uncharacterized protein, involved in the; E=1e-10 AF1778; COG2088 Uncharacterized protein, involved in the regulation; E=3e-05 NP_869474.1 best DB hits: BLAST: swissprot:Q9KGK0; ISPE_BACHD; E=2e-13 swissprot:Q9RR89; ISPE_DEIRA; E=1e-12 swissprot:O05596; ISPE_MYCTU; E=2e-10 COG: BH0061; COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol; E=2e-14 ychB; COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate; E=2e-05 TM1383; COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol; E=2e-04 NP_869475.1 best DB hits: BLAST: pir:E70410; hypothetical protein aq_1276 - Aquifex aeolicus -----; E=2e-15 gb:AAA96792.1; (U51683) ORF9; hypothetical protein [Brucella; E=4e-14 pir:G71632; hypothetical protein RP730 - Rickettsia prowazekii; E=8e-12 NP_869476.1 PMID: 1987124 PMID: 1602961 PMID: 1429432 PMID: 8444173 PMID: 8366125 best DB hits: BLAST: pir:F72094; UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine; E=4e-46 swissprot:O24991; LPXD_HELPY UDP-3-O-[3-HYDROXYMYRISTOYL]; E=1e-43 gb:AAC45422.1; (U79481); E=7e-43 COG: CPn0302; COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine; E=4e-47 lpxA; COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine; E=1e-13 NMB0178; COG1043 Acyl-[acyl carrier; E=2e-12 PFAM: PF00132; Bacterial transferase hexapeptide (f; E=0.0016 NP_869477.1 best DB hits: BLAST: gb:AAF26789.1; AC016829_13 (AC016829) O-linked GlcNAc; E=1e-05 swissprot:P56558; OGT1_RAT UDP-N-ACETYLGLUCOSAMINE--PEPTIDE; E=3e-05 gb:AAF31458.1; (AF223393) HRNT1 [Homo sapiens]; E=3e-05 COG: TP0468; COG0457 TPR-repeat-containing proteins; E=7e-04 PFAM: PF00515; TPR Domain; E=0.00012 NP_869478.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA NP_869480.1 best DB hits: BLAST: pir:G83242; hypothetical protein PA3219 [imported] - Pseudomonas; E=6e-35 COG: PA3219; COG2908 Uncharacterized BCR; E=5e-36 NP_869483.1 PMID: 3086287 PMID: 3027051 PMID: 3036777 best DB hits: BLAST: swissprot:P08064; DHSC_BACSU SUCCINATE DEHYDROGENASE CYTOCHROME; E=2e-23 embl:CAA69871.1; (Y08563) succinate dehydrogenase subunit C; E=6e-20 ddbj:BAB06812.1; (AP001517) succinate dehydrogenase cytochrome; E=1e-19 COG: BS_sdhC; COG2009 Succinate dehydrogenase/fumarate reductase; E=2e-24 NP_869484.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol NP_869485.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase NP_869487.1 best DB hits: BLAST: ddbj:BAA95412.1; (AB036744) This protein has 3 calmodulin-like; E=0.002 ddbj:BAB03079.1; (AP001313) calmodulin-like protein [Arabidopsis; E=0.016 pir:A31797; Spec-related protein (clone LpS1) - sea urchin; E=0.032 PFAM: PF00036; EF hand; E=0.096 NP_869488.1 best DB hits: PFAM: PF00263; Bacterial type II and III secretio; E=0.066 NP_869490.1 PMID: 3020045 best DB hits: BLAST: ddbj:BAA83912.1; (AB024550) GNTP [Bacillus halodurans] -----; E=3e-28 gb:AAK03824.1; (AE006211) GntP [Pasteurella multocida]; E=4e-28 swissprot:Q9Z670; GNTP_ZYMMO GLUCONATE PERMEASE ----- gb:; E=6e-26 COG: BH0805; COG2610 H+/gluconate symporter and related permeases; E=3e-29 PFAM: PF02447; GntP family permease; E=1.7e-49 NP_869491.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate NP_869499.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_869500.1 best DB hits: BLAST: pir:B70374; conserved hypothetical protein aq_854 - Aquifex aeolicus; E=1e-05 ddbj:BAA91540.1; (AK001182) unnamed protein product [Homo; E=0.12 embl:CAB98267.1; (AJ276171) ASPIC [Homo sapiens]; E=0.12 COG: aq_854; COG0457 TPR-repeat-containing proteins; E=1e-06 PFAM: PF00515; TPR Domain; E=0.059 NP_869501.1 best DB hits: BLAST: gb:AAG19595.1; (AE005049) X-pro aminopeptidase homolog; PepQ2; E=1e-43 gb:AAB89220.1; (AE000962) X-pro aminopeptidase (pepQ); E=3e-16 swissprot:Q10698; YK89_MYCTU PROBABLE DIPEPTIDASE RV2089C -----; E=4e-16 COG: VNG1233G; COG0006 Xaa-Pro aminopeptidase; E=1e-44 PFAM: PF00557; metallopeptidase M24; E=0.3 NP_869502.1 best DB hits: BLAST: pir:F75129; hypothetical protein PAB0562 - Pyrococcus abyssi (strain; E=4e-07 embl:CAC23276.1; (AL512965) hypothetical [Sulfolobus; E=1e-05 pir:A69108; probable phosphoesterase (EC 3.1.-.-) MTH1803 -; E=2e-04 COG: PAB0562; COG1407 Predicted ICC-like phosphoesterases; E=3e-08 NP_869504.1 PMID: 10368134 best DB hits: BLAST: swissprot:P75920; MDOC_ECOLI GLUCANS BIOSYNTHESIS PROTEIN MDOC; E=2e-10 gb:AAG55793.1; AE005315_7 (AE005315) orf, hypothetical protein; E=2e-09 embl:CAB77037.1; (AJ245997) hypothetical protein [Xanthomonas; E=0.003 PFAM: PF00023; Ank repeat; E=1e-05 NP_869505.1 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate NP_869506.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate NP_869508.1 best DB hits: BLAST: pir:T49425; hypothetical protein B17C10.60 [imported] - Neurospora; E=0.0 embl:CAA87818.1; (Z47815) unknown [Saccharomyces cerevisiae]; E=0.0 embl:CAA96728.1; (Z72549) ORF YGL027c [Saccharomyces cerevisiae]; E=7e-06 PFAM: PF00452; Apoptosis regulator proteins, B; E=0.0068 NP_869510.1 PMID: 20233298 best DB hits: BLAST: gb:AAF30402.1; AF109924_1 (AF109924) sulfatase 1 precursor [Helix; E=8e-37 gb:AAF49287.1; (AE003522) CG7402 gene product [Drosophila; E=2e-29 gb:AAA51779.1; (M32373) arylsulfatase B precursor [Homo sapiens]; E=3e-29 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=6e-26 PFAM: PF00884; Sulfatase; E=2e-35 NP_869512.1 best DB hits: BLAST: embl:CAB94996.1; (AJ278464) annexin A11 [Homo sapiens]; E=0.20 ref:XP_005688.1; annexin XI [Homo sapiens]; E=0.56 NP_869514.1 PMID: 11292750 best DB hits: BLAST: swissprot:P03835; YI41_ECOLI INSERTION ELEMENT IS4 HYPOTHETICAL; E=0.030 embl:CAA57483.1; (X81894) ORF [Enterobacter agglomerans]; E=0.064 COG: yi41; COG3385 Predicted transposase; E=0.003 NP_869515.1 PMID: 8244397 PMID: 8325651 best DB hits: BLAST: gb:AAA16877.1; (L13329) iduronate-2-sulfatase [Homo sapiens]; E=1e-39 gb:AAB33747.1; iduronate-2-sulfatase, IDS {EC 3.1.6.13} [human,; E=6e-39 gb:AAA37880.1; (L07921) iduronate sulfatase [Mus musculus]; E=6e-37 COG: PA0031; COG3119 Arylsulfatase A and related enzymes; E=2e-28 PAB0793; COG2194 Predicted membrane-associated, metal-dependent; E=1e-08 VNG0061C; COG3119 Arylsulfatase A and related enzymes; E=2e-08 PFAM: PF00884; Sulfatase; E=5.7e-22 NP_869516.1 PMID: 11157937 PMID: 11481430 best DB hits: BLAST: swissprot:Q9R9N0; LPSD_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS; E=4e-17 swissprot:Q9R9N1; LPSE_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS; E=2e-16 ddbj:BAB07431.1; (AP001519) BH3712~unknown conserved protein; E=3e-14 COG: DR0713; COG0438 Predicted glycosyltransferases; E=3e-17 PFAM: PF00534; Glycosyl transferases group 1; E=1e-30 NP_869517.1 PMID: 9278503 PMID: 3038546 best DB hits: BLAST: ddbj:BAB04209.1; (AP001508) altronate hydrolase [Bacillus; E=6e-65 gb:AAG58224.1; AE005539_1 (AE005539) altronate hydrolase; E=2e-64 swissprot:P42604; UXAA_ECOLI ALTRONATE HYDROLASE (ALTRONIC ACID; E=2e-63 COG: BH0490; COG2721 Altronate dehydratase; E=6e-66 NP_869518.1 PMID: 3002435 PMID: 8144675 best DB hits: BLAST: ddbj:BAB06189.1; (AP001515) succinyl-CoA synthetase (beta; E=1e-101 swissprot:P80886; SUCC_BACSU SUCCINYL-COA SYNTHETASE BETA CHAIN; E=5e-99 pir:H82120; succinyl-CoA synthase, beta chain VC2085 [imported] -; E=8e-91 COG: BH2470; COG0045 Succinyl-CoA synthetase beta subunit; E=1e-102 PFAM: PF02222; ATP-grasp domain; E=1.7e-37 PF00549; CoA-ligase; E=1.3e-66 NP_869519.1 PMID: 3002435 PMID: 2548486 PMID: 8144675 best DB hits: BLAST: embl:CAA54877.1; (X77919) succinyl-CoA synthetase alpha; E=3e-91 swissprot:P53591; SUCD_COXBU SUCCINYL-COA SYNTHETASE ALPHA CHAIN; E=5e-91 swissprot:P07459; SUCD_ECOLI SUCCINYL-COA SYNTHETASE ALPHA CHAIN; E=5e-90 COG: sucD; COG0074 succinyl-CoA synthetase subunit alpha; E=5e-91 PFAM: PF00549; CoA-ligase; E=4.1e-64 NP_869523.1 PMID: 98386497 best DB hits: BLAST: gb:AAC36499.1; (U45241) GroESHSP10 homolog [Lawsonia; E=1e-21 ddbj:BAA19726.1; (D88802) groES [Bacillus subtilis] -----; E=2e-21 swissprot:P26210; CH10_BACP3 10 KD CHAPERONIN (PROTEIN CPN10); E=4e-21 COG: BS_groES; COG0234 Co-chaperonin GroES (HSP10); E=2e-22 PFAM: PF00166; Chaperonin 10 Kd subunit; E=6.3e-47 NP_869524.1 PMID: 8808920 best DB hits: BLAST: gb:AAD37976.1; AF145252_2 (AF145252) heat shock protein GroEL; E=1e-165 swissprot:P77829; CH61_BRAJA 60 KD CHAPERONIN 1 (PROTEIN CPN60 1); E=1e-165 gb:AAC36500.1; (U45241) GroELHSP60 homolog [Lawsonia; E=1e-162 COG: CPn0134; COG0459 Chaperonin GroEL (HSP60 family); E=1e-162 PFAM: PF00118; TCP-1/cpn60 chaperonin family; E=3.5e-219 NP_869526.1 PMID: 11258796 old EC_number=1.14.1.- best DB hits: BLAST: pir:G70946; probable dioxygenase (EC 1.14.-.-) Rieske iron-sulfur; E=4e-17 ddbj:BAA15597.1; (D90823) Benzene 1,2-dioxygenase a subunit (EC; E=2e-15 swissprot:P76253; YEAW_ECOLI DIOXYGENASE ALPHA SUBUNIT; E=2e-15 COG: Rv3161c; COG2146 Ferredoxin subunits of nitrite reductase and; E=3e-18 PFAM: PF00355; Rieske [2Fe-2S] domain; E=4.6e-17 NP_869529.2 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit NP_869530.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu NP_869531.1 best DB hits: BLAST: ddbj:BAB10039.1; (AB007727) Rab geranylgeranyltransferase, beta; E=5e-05 swissprot:P41992; PFTB_CAEEL PROBABLE PROTEIN FARNESYLTRANSFERASE; E=7e-05 swissprot:Q04903; PFTB_PEA PROTEIN FARNESYLTRANSFERASE BETA; E=0.005 PFAM: PF00432; Prenyltransferase and squalene ox; E=1.4e-08 NP_869532.1 PMID: 8158647 best DB hits: BLAST: pir:A81293; probable flagellar hook-associated protein Cj1466; E=8e-31 pir:G71853; flagellar hook-associated protein 1 (hap1) -; E=9e-29 gb:AAG61142.1; (AF333079) flagellar hook-associated protein 1; E=2e-28 COG: Cj1466; COG1256 Flagellar hook-associated protein; E=8e-32 PFAM: PF00460; Flagella basal body rod protein; E=7.7e-08 NP_869534.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate NP_869535.1 PMID: 10660060 best DB hits: BLAST: gb:AAD55584.1; (AF077869) C-methyltransferase [Streptomyces; E=4e-09 gb:AAG15232.1; AF288602_4 (AF288602) CrtF [Chloroflexus; E=4e-07 pir:T34921; probable methyltransferase - Streptomyces coelicolor; E=2e-06 COG: Rv0089; COG0500 SAM-dependent methyltransferases; E=7e-04 DR2405; COG2226 Methylase involved in ubiquinone/menaquinone; E=0.002 NP_869536.1 best DB hits: BLAST: gb:AAK05889.1; AE006408_13 (AE006408) conserved hypothetical; E=2e-16 pir:A72506; probable tRNA splicing protein SPL1 APE2023 - Aeropyrum; E=3e-17 pir:F65063; hypothetical protein b2810 - Escherichia coli (strain; E=8e-18 COG: BB0084; COG0520 Selenocysteine lyase; E=2e-13 yfhO; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; E=1e-14 BS_ycbU; COG0520 Selenocysteine lyase; E=2e-15 PFAM: PF00266; Aminotransferase class-V; E=1.5e-05 NP_869537.1 PMID: 10480925 PMID: 10205156 best DB hits: BLAST: swissprot:Q9WZK0; COAD_THEMA PHOSPHOPANTETHEINE; E=1e-27 ddbj:BAB06308.1; (AP001516) pantetheine-phosphate; E=1e-27 swissprot:Q55235; COAD_SYNP7 PHOSPHOPANTETHEINE; E=1e-27 COG: TM0741; COG0669 Phosphopantetheine adenylyltransferase; E=1e-28 VNG0301C; COG1056 Nicotinamide mononucleotide adenylyltransferase; E=0.003 aq_1368; COG0615 Predicted cytidylyltransferases; E=0.005 PFAM: PF01467; Cytidylyltransferase; E=3.7e-32 NP_869538.1 best DB hits: BLAST: pir:G83352; transcriptional regulator MtlR PA2337 [imported] -; E=1e-09 pir:S52856; AraC-like protein - Azorhizobium caulinodans -----; E=1e-08 gb:AAF43900.1; (U20115) adpA-like protein [Mycobacterium; E=2e-08 COG: PA2337; COG2207 AraC-type DNA-binding domain-containing proteins; E=1e-10 BS_adaA; COG2169 Adenosine deaminase; E=1e-05 araC; COG2207 AraC-type DNA-binding domain-containing proteins; E=1e-05 PFAM: PF00165; Bacterial regulatory helix-turn-heli; E=1.4e-21 NP_869541.1 best DB hits: BLAST: pir:H69818; conserved hypothetical protein yhaN - Bacillus subtilis; E=2e-07 ddbj:BAB05865.1; (AP001514) BH2146~unknown conserved protein; E=0.002 pir:S56387; hypothetical protein f1107 - Escherichia coli -----; E=0.004 COG: BH2146; COG1511 Predicted membrane protein; E=2e-04 yjeP; COG3264 Small-conductance mechanosensitive channel; E=4e-04 PFAM: PF00005; ABC transporter; E=0.1 NP_869542.1 best DB hits: BLAST: pir:A69819; probable phosphoesterase (EC 3.1.-.-) yhaO - Bacillus; E=3e-31 pir:E75103; DNA repair protein rad32 (rad32) PAB0811 - Pyrococcus; E=6e-07 gb:AAG60901.1; AF322013_20 (AF322013) ID473 [Bradyrhizobium; E=1e-05 COG: BS_yhaO; COG0420 DNA repair exonuclease; E=3e-32 PFAM: PF02549; DNA repair exonuclease; E=5.9e-18 NP_869543.1 best DB hits: BLAST: ddbj:BAB03764.1; (AP001507) signal peptidase-like protein; E=0.87 NP_869544.1 best DB hits: BLAST: pir:F69009; probable membrane protein MTH1074 - Methanobacterium; E=1e-114 embl:CAA48444.1; (X68367) ORF5' [Methanobacterium; E=9e-18 pir:S30585; hypothetical protein 5 - Methanobacterium thermoformicicum; E=6e-17 PFAM: PF01345; Domain of unknown function DUF11; E=0.007 NP_869546.1 best DB hits: BLAST: pir:B83531; hypothetical protein PA0924 [imported] - Pseudomonas; E=1e-12 pir:D82055; conserved hypothetical protein VC2600 [imported] -; E=7e-06 gb:AAK03767.1; (AE006205) unknown [Pasteurella multocida]; E=0.12 COG: PA0924; COG3083 Predicted hydrolase of alkaline phosphatase; E=1e-13 NP_869548.1 best DB hits: BLAST: pir:S22614; hypothetical protein - Salmonella choleraesuis -----; E=9e-25 NP_869552.1 best DB hits: BLAST: pir:S00715; hypothetical protein - Calothrix sp ----- embl:; E=0.64 NP_869553.1 best DB hits: PFAM: PF00534; Glycosyl transferases group 1; E=0.001 NP_869555.1 best DB hits: BLAST: gb:AAK03171.1; (AE006150) unknown [Pasteurella multocida]; E=4e-48 embl:CAB63312.1; (AL133471) hypothetical protein SCC82.03c; E=5e-48 swissprot:P45672; NIR3_AZOBR NIFR3-LIKE PROTEIN ----- pir:; E=1e-46 COG: BH0097; COG0042 Predicted TIM-barrel enzymes, possibly; E=2e-47 yhdG; COG0042 Predicted TIM-barrel enzymes, possibly dehydrogenases,; E=1e-42 RP011; COG0042 Predicted TIM-barrel enzymes, possibly; E=3e-41 PFAM: PF01207; Uncharacterized protein family UPF00; E=3.3e-79 NP_869556.1 PMID: 12024217 NP_869560.1 best DB hits: BLAST: pir:T34936; hypothetical protein SC3F9.14 SC3F9.14 - Streptomyces; E=3e-83 pir:T36185; hypothetical protein SCE29.06c - Streptomyces coelicolor; E=2e-73 pir:B82537; phosphodiesterase-nucleotide pyrophosphatase precursor; E=0.094 COG: XF2599; COG1524 Uncharacterized proteins of the AP superfamily; E=0.009 PFAM: PF01663; Type I phosphodiesterase / nucle; E=0.18 NP_869561.1 PMID: 1447975 best DB hits: BLAST: embl:CAC01597.1; (AL391041) amino acid transport; E=1e-90 gb:AAF12563.1; AE001826_32 (AE001826) Na(+)-linked D-alanine; E=5e-81 ddbj:BAB07752.1; (AP001520) amino acid transporter [Bacillus; E=4e-46 COG: DRB0133; COG1115 Na+/alanine symporter; E=4e-82 PFAM: PF02497; Arterivirus glycoprotein; E=0.45 PF00746; Gram positive anchor; E=0.031 PF01235; Sodium:alanine symporter fami; E=5.2e-96 NP_869566.1 PMID: 8921895 best DB hits: BLAST: gb:AAK03054.1; (AE006136) TolQ [Pasteurella multocida]; E=3e-10 swissprot:P43768; TOLQ_HAEIN TOLQ PROTEIN ----- pir: I64064; E=7e-09 pir:PC4258; tolQ protein - Haemophilus influenzae (fragment) -----; E=2e-08 COG: HI0385; COG0811 Biopolymer transport proteins; E=7e-10 PFAM: PF01618; MotA/TolQ/ExbB proton channel famil; E=1.4e-18 NP_869567.1 PMID: 9781885 best DB hits: BLAST: pir:E82726; conserved hypothetical protein XF1080 [imported] -; E=0.007 swissprot:Q9ZHV9; EXD2_VIBCH BIOPOLYMER TRANSPORT EXBD2 PROTEIN; E=0.043 pir:B82858; biopolymer transport ExbD1 protein XF0011 [imported] -; E=0.16 COG: XF1080; COG0848 Biopolymer transport protein; E=7e-04 PFAM: PF02472; Biopolymer transport protein ExbD/To; E=5.3e-06 NP_869568.1 PMID: 9140974 best DB hits: BLAST: embl:CAB50919.1; (AJ243354) hypothetical protein [Pseudomonas; E=4e-05 pir:F83274; conserved hypothetical protein PA2982 [imported] -; E=7e-05 swissprot:O06434; EXBD_NEIGO BIOPOLYMER TRANSPORT EXBD PROTEIN; E=0.001 COG: PA2982; COG0848 Biopolymer transport protein; E=7e-06 PFAM: PF02472; Biopolymer transport protein ExbD/; E=8.9e-08 NP_869569.1 best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=0.045 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=0.004 PFAM: PF01011; PQQ enzyme repeat; E=0.009 NP_869570.1 best DB hits: BLAST: ddbj:BAA15142.1; (D90789) Periplasmic dipeptide transport protein; E=0.15 swissprot:P76128; YDDS_ECOLI BINDING PROTEIN YDDS; E=0.15 gb:AAG56282.1; AE005357_2 (AE005357) hemin-binding; E=0.15 NP_869572.1 PMID: 10407164 PMID: 10368271 best DB hits: BLAST: swissprot:O87703; DNLJ_BACST DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE; E=1e-135 swissprot:O31498; DNLJ_BACSU DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE; E=1e-135 swissprot:P15042; DNLJ_ECOLI DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE; E=1e-133 COG: BS_yerG; COG0272 NAD-dependent DNA ligase (contains BRCT domain type; E=1e-136 lig; COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); E=1e-134 BH0649; COG0272 NAD-dependent DNA ligase (contains BRCT domain type; E=1e-134 PFAM: PF01653; NAD-dependent DNA ligase; E=4.3e-103 PF00633; Helix-hairpin-helix motif.; E=0.3 PF00533; BRCA1 C Terminus (BRCT) domain; E=9.8e-16 NP_869575.1 PMID: 11932238 best DB hits: BLAST: pir:C82804; conserved hypothetical protein XF0464 [imported] -; E=0.10 swissprot:Q9Z4J7; EXAA_PSEAE QUINOPROTEIN ETHANOL DEHYDROGENASE; E=0.29 pdb:1FLG; A Chain A, Crystal Structure Of The Quinoprotein Ethanol; E=0.29 COG: XF0464; COG1520 Uncharacterized proteins of WD40-like repeat family; E=0.009 PFAM: PF01011; PQQ enzyme repeat; E=0.0088 NP_869577.1 best DB hits: BLAST: pir:S56387; hypothetical protein f1107 - Escherichia coli -----; E=9e-35 swissprot:P39285; YJEP_ECOLI HYPOTHETICAL 123.8 KD PROTEIN IN; E=2e-34 gb:AAG59358.1; AE005649_3 (AE005649) periplasmic binding; E=2e-34 COG: yjeP; COG3264 Small-conductance mechanosensitive channel; E=2e-35 PA1408_2; COG0668 Small-conductance mechanosensitive channel; E=2e-15 PFAM: PF00924; Uncharacterized protein famil; E=2.9e-36 NP_869578.1 PMID: 97094642 best DB hits: BLAST: ddbj:BAB05909.1; (AP001514) manganese-containing catalase; E=3e-62 swissprot:P80878; GS80_BACSU GENERAL STRESS PROTEIN 80 (GSP80); E=1e-61 pir:C69854; conserved hypothetical protein yjqC - Bacillus subtilis; E=2e-56 NP_869583.1 PMID: 7926692 best DB hits: BLAST: swissprot:P47734; FADH_METMR GLUTATHIONE-DEPENDENT FORMALDEHYDE; E=1e-160 pir:A75593; alcohol dehydrogenase, zinc-containing - Deinococcus; E=1e-113 pir:B83373; probable alcohol dehydrogenase (Zn-dependent) PA2188; E=7e-84 COG: DRA0005; COG1063 Threonine dehydrogenase and related Zn-dependent; E=1e-114 sll0990; COG1062 Zn-dependent alcohol dehydrogenases, class III; E=7e-20 PFAM: PF00107; Zinc-binding dehydrogenases; E=3e-74 NP_869605.1 PMID: 2642743 best DB hits: BLAST: swissprot:P19705; T1SE_ECOLI TYPE I RESTRICTION ENZYME ECOEI; E=5e-22 swissprot:P05719; T1SK_ECOLI TYPE I RESTRICTION ENZYME ECOKI; E=2e-18 swissprot:P06990; T1SB_ECOLI TYPE I RESTRICTION ENZYME ECOBI; E=1e-16 COG: hsdS; COG0732 Restriction endonuclease S subunits; E=1e-19 PFAM: PF01420; Type I restriction modification D; E=4.3e-18 NP_869606.1 PMID: 1409708 PMID: 3025838 best DB hits: BLAST: swissprot:P07989; T1M_SALPO TYPE I RESTRICTION ENZYME STYSPI M; E=1e-135 gb:AAA23985.1; (L02508) restriction-modification enzyme type I M; E=1e-134 swissprot:P08957; T1MK_ECOLI TYPE I RESTRICTION ENZYME ECOKI M; E=1e-134 COG: hsdM; COG0286 Type I restriction-modification system; E=1e-135 PFAM: PF02506; Type I restriction modification s; E=0.00016 PF02384; N-6 DNA Methylase; E=7.2e-40 NP_869607.1 restriction endonuclease; the EcoKI enzyme recognizes 5'-AACN(6)GTGC-3'; subunit R is required for both nuclease and ATPase activities NP_869612.1 best DB hits: BLAST: embl:CAC08270.1; (AL392146) ATP-binding protein; E=4e-28 NP_869615.1 best DB hits: PFAM: PF00589; Phage integrase; E=0.063 NP_869616.1 best DB hits: BLAST: pir:A72236; hypothetical protein TM1585 - Thermotoga maritima; E=8e-33 pir:B71162; hypothetical protein PH0495 - Pyrococcus horikoshii; E=6e-30 swissprot:Q44472; TUD4_AGRVI HYDROXYPYRUVATE REDUCTASE; E=5e-29 COG: TM1585; COG2379 glycerate kinase; E=8e-34 NP_869617.1 best DB hits: BLAST: pir:S75290; hypothetical protein sll1289 - Synechocystis sp. (strain; E=2e-50 pir:G70687; hypothetical protein Rv1732c - Mycobacterium; E=2e-41 gb:AAF87891.1; AC015447_1 (AC015447) Hypothetical protein; E=3e-37 COG: sll1289; COG0526 Thiol-disulfide isomerase and thioredoxins; E=2e-51 Rv2521; COG1225 Peroxiredoxins; E=4e-06 NMB1958; COG0526 Thiol-disulfide isomerase and thioredoxins; E=0.004 PFAM: PF00578; AhpC/TSA family; E=0.0023 NP_869618.1 PMID: 8075395 PMID: 8953047 PMID: 10493822 best DB hits: BLAST: gb:AAD04184.1; (L10036) unknown [Nostoc sp. PCC 7120]; E=2e-60 swissprot:Q05069; FABI_ANASP ENOYL-[ACYL-CARRIER-PROTEIN]; E=2e-60 pir:H81284; probable enoyl-[acyl-carrier-protein] reductase [NADH]; E=1e-55 COG: Cj1400c; COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH); E=9e-57 BH1511; COG1028 Dehydrogenases with different specificities (related; E=2e-16 BS_yhdF; COG1028 Dehydrogenases with different specificities; E=2e-15 PFAM: PF00106; short chain dehydrogenase; E=0.019 PF00678; Short chain dehydrogenase/reduct; E=2.3e-07 NP_869619.1 best DB hits: BLAST: pir:C83055; probable two-component response regulator PA4726; E=2e-58 gb:AAG59807.1; AF305914_2 (AF305914) HydG [Klebsiella oxytoca]; E=2e-58 pir:T08624; probable NtrC-type response regulator - Eubacterium; E=3e-58 COG: PA4726; COG2204 AAA superfamily ATPases with N-terminal receiver; E=2e-59 PA2359; COG1221 NtrC family transcriptional regulators, ATPase; E=2e-58 VC1926; COG2204 AAA superfamily ATPases with N-terminal receiver; E=2e-57 PFAM: PF01590; GAF domain; E=1.1e-13 PF00158; Sigma-54 interaction domain; E=1e-128 NP_869620.1 best DB hits: BLAST: pir:A71552; probable lysophospholipase esterase - Chlamydia; E=4e-08 pir:F81704; serine esterase, probable TC0413 [imported] - Chlamydia; E=6e-08 pir:D72098; serine esterase, probable CP0488 [imported] -; E=1e-06 COG: CT136; COG0400 Predicted esterase; E=4e-09 PFAM: PF02230; Phospholipase/Carboxylesterase; E=0.68 NP_869622.1 best DB hits: BLAST: embl:CAB37418.1; (AJ224978) ORF 245 [Salmonella typhimurium]; E=0.002 gb:AAG31761.1; (AF282268) unknown [Salmonella enterica serovar; E=0.23 NP_869623.1 PMID: 88038383 best DB hits: BLAST: swissprot:Q09669; ADHF_SCHPO IRON ALCOHOL DEHYDROGENASE; E=5e-46 gb:AAD43989.1; U59485_16 (U59485) AttL [Agrobacterium tumefaciens]; E=5e-45 gb:AAG58733.1; AE005585_7 (AE005585) oxidoreductase; E=6e-42 COG: yiaY; COG1454 Alcohol dehydrogenase IV; E=3e-42 PFAM: PF00465; Iron-containing alcohol dehydrogenas; E=3.3e-58 NP_869628.1 best DB hits: BLAST: pir:C75278; DNA polymerase III, taugamma subunit - Deinococcus; E=2e-23 gb:AAB82595.1; (AF025391) DNA polymerase III holoenzyme tau; E=4e-22 pir:A70460; DNA polymerase III gamma subunit - Aquifex aeolicus; E=9e-21 COG: DR2410; COG2812 DNA polymerase III, gamma/tau subunits; E=2e-24 NMB0769; COG0470 ATPase involved in DNA replication; E=1e-19 Cj1157; COG2812 DNA polymerase III, gamma/tau subunits; E=4e-18 PFAM: PF00448; SRP54-type protein, GTPase domain; E=0.64 PF00004; ATPase associated with vario; E=0.0033 NP_869629.1 PMID: 8576032 best DB hits: BLAST: ddbj:BAB07486.1; (AP001519) ribose 5-phosphate epimerase (pentose; E=3e-30 pir:H70397; ribose 5-phosphate isomerase B - Aquifex aeolicus; E=9e-29 embl:CAA07515.1; (AJ007446) hypothetical protein [Thermotoga; E=7e-27 COG: BH3767; COG0698 Ribose 5-phosphate isomerase RpiB; E=2e-31 PFAM: PF02502; Ribose/Galactose Isomerase; E=1.1e-35 NP_869630.1 PMID: 7798145 best DB hits: BLAST: swissprot:P39155; YWLE_BACSU LOW MOLECULAR WEIGHT; E=1e-13 swissprot:Q45408; EPSP_BURSO PROBABLE LOW MOLECULAR WEIGHT; E=3e-10 ddbj:BAB07488.1; (AP001519) protein-tyrosine-phosphatase; E=1e-09 COG: BS_ywlE; COG0394 Protein-tyrosine-phosphatase; E=1e-14 VC1079; COG0009 translation factor (SUA5); E=2e-06 BH2998; COG0394 Protein-tyrosine-phosphatase; E=8e-05 PFAM: PF01300; SUA5/yciO/yrdC family; E=0.14 PF01451; Low molecular weight phosphoty; E=2.2e-28 NP_869631.1 best DB hits: BLAST: swissprot:Q03601; YMB4_CAEEL HYPOTHETICAL 109.1 KDA PROTEIN; E=6e-23 ddbj:BAA83343.1; (AB030912) RING finger protein HAC1 [Mus; E=8e-16 gb:AAC17997.1; (AF036255) RING finger protein [Rattus norvegicus]; E=1e-15 PFAM: PF01436; NHL repeat; E=0.00042 NP_869636.1 PMID: 9383193 best DB hits: BLAST: gb:AAD31002.1; AF127082_1 (AF127082) ATP-dependent protease; E=2e-52 swissprot:Q60107; CLPP_YEREN ATP-DEPENDENT CLP PROTEASE; E=1e-48 swissprot:Q9WZF9; CLPP_THEMA ATP-DEPENDENT CLP PROTEASE; E=1e-48 COG: TM0695; COG0740 Protease subunit of ATP-dependent Clp proteases; E=1e-49 PFAM: PF00574; Clp protease; E=5e-76 NP_869637.1 PMID: 10360571 best DB hits: BLAST: swissprot:Q9WZF9; CLPP_THEMA ATP-DEPENDENT CLP PROTEASE; E=7e-69 swissprot:Q60107; CLPP_YEREN ATP-DEPENDENT CLP PROTEASE; E=5e-68 ddbj:BAA94668.1; (AB033628) serine protease subunit [Salmonella; E=9e-68 COG: TM0695; COG0740 Protease subunit of ATP-dependent Clp proteases; E=7e-70 PFAM: PF00378; Enoyl-CoA hydratase/isomerase fa; E=0.064 PF00574; Clp protease; E=1.5e-111 NP_869639.1 PMID: 2121708 PMID: 10984043 best DB hits: BLAST: pir:B81175; argininosuccinate lyase NMB0637 [imported] - Neisseria; E=1e-110 pir:C81930; probable argininosuccinate lyase (EC 4.3.2.1) NMA0847; E=1e-110 swissprot:P50987; ARLY_PSEAE ARGININOSUCCINATE LYASE; E=1e-107 COG: NMB0637; COG0165 Argininosuccinate lyase; E=1e-111 PAB0829; COG0015 Adenylosuccinate lyase; E=5e-14 PFAM: PF00206; Lyase; E=3.2e-82 NP_869640.1 best DB hits: BLAST: gb:AAG17720.1; AF286114_1 (AF286114) PAK-like protein kinase; E=0.82 NP_869641.1 best DB hits: BLAST: pir:T36293; probable serinethreonine protein kinase - Streptomyces; E=0.15 gb:AAG20933.1; (AE005160) Vng6297c [Halobacterium sp. NRC-1]; E=0.24 pir:C82804; conserved hypothetical protein XF0464 [imported] -; E=0.56 PFAM: PF01011; PQQ enzyme repeat; E=0.045 NP_869642.1 PMID: 7860585 best DB hits: BLAST: pir:I39710; cellulose biosynthesis protein celD - Agrobacterium; E=4e-05 embl:CAB92279.1; (AL356595) hypothetical protein [Streptomyces; E=0.001 PFAM: PF02572; ATP:corrinoid adenosyltransfer; E=0.094 NP_869643.1 best DB hits: PFAM: PF00583; Acetyltransferase (GNAT) family; E=2.3e-12 NP_869647.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA NP_869648.1 PMID: 9389475 best DB hits: BLAST: gb:AAB89497.1; (AE000982) lysophospholipase [Archaeoglobus; E=2e-10 pir:D69998; lysophospholipase homolog ytpA - Bacillus subtilis; E=1e-05 embl:CAA64113.1; (X94355) M5L [Cowpox virus] ----- embl:; E=2e-05 COG: AF1753; COG2267 Lysophospholipase; E=2e-11 PFAM: PF00561; alpha/beta hydrolase fold; E=6.7e-09 NP_869649.1 PMID: 8990288 best DB hits: BLAST: pir:H69855; chloromuconate cycloisomerase homolog ykfB - Bacillus; E=7e-22 pir:T51250; chloromuconate cycloisomerase homolog ykfB [imported] -; E=3e-19 ddbj:BAB06725.1; (AP001517) muconate cycloisomerase [Bacillus; E=3e-19 COG: BS_ykfB; COG1441 O-succinylbenzoate synthase and related enzymes; E=6e-23 PFAM: PF01188; Mandelate racemase / muconate; E=3.6e-27 NP_869650.1 PMID: 10984043 best DB hits: BLAST: pir:H83099; probable oxidoreductase PA4361 [imported] - Pseudomonas; E=3e-24 pir:T34919; oxidoreductase - Streptomyces coelicolor ----- embl:; E=3e-18 pir:E82632; NAD(P)H steroid dehydrogenase XF1825 [imported] -; E=9e-16 COG: PA4361; COG0451 Nucleoside-diphosphate-sugar epimerases; E=3e-25 slr0836; COG1088 dTDP-D-glucose 4,6-dehydratase; E=6e-04 Rv3784; COG0451 Nucleoside-diphosphate-sugar epimerases; E=0.004 PFAM: PF00106; short chain dehydrogenase; E=0.0018 PF01073; 3-beta hydroxysteroid dehydro; E=4.1e-08 PF01370; NAD dependent epimerase/dehyd; E=1.7e-06 NP_869653.1 PMID: 8316082 best DB hits: BLAST: swissprot:Q07833; WAPA_BACSU WALL-ASSOCIATED PROTEIN PRECURSOR; E=4e-09 pir:JS0625; rhsD protein - Escherichia coli ----- gb: AAA24544.1; E=1e-08 swissprot:P16919; RHSD_ECOLI RHSD PROTEIN PRECURSOR ----- pir:; E=1e-08 COG: BS_wapA; COG3209 Rhs family protein; E=4e-10 NP_869661.1 PMID: 12000953 best DB hits: BLAST: swissprot:Q9Z507; UVRA_STRCO EXCINUCLEASE ABC SUBUNIT A -----; E=1e-132 swissprot:O34863; UVRA_BACSU EXCINUCLEASE ABC SUBUNIT A -----; E=1e-131 swissprot:Q56242; UVRA_THETH EXCINUCLEASE ABC SUBUNIT A -----; E=1e-130 COG: BS_uvrA; COG0178 Excinuclease ATPase subunit; E=1e-132 PFAM: PF01443; Viral (Superfamily 1) RNA hel; E=0.46 PF00005; ABC transporter; E=0.2 NP_869662.1 best DB hits: PFAM: PF02517; CAAX amino terminal protease; E=0.2 NP_869663.1 PMID: 7750561 best DB hits: BLAST: ddbj:BAB06105.1; (AP001515) phosphatidylglycerophosphate synthase; E=7e-20 pir:I39950; pgsA protein - Bacillus subtilis ----- ddbj:; E=5e-16 swissprot:P46322; PGSA_BACSU; E=5e-15 COG: BH2386; COG0558 Phosphatidylglycerophosphate synthase; E=7e-21 PFAM: PF01066; CDP-alcohol phosphatidyltrans; E=1.1e-21 NP_869664.1 PMID: 9537320 best DB hits: BLAST: swissprot:O67016; Y849_AQUAE HYPOTHETICAL PROTEIN AQ_849 -----; E=1e-87 swissprot:Q55803; Y082_SYNY3 HYPOTHETICAL 49.4 KD PROTEIN SLR0082; E=4e-84 swissprot:P75802; YLIG_ECOLI HYPOTHETICAL 49.6 KDA PROTEIN IN; E=1e-76 COG: aq_849; COG0621 Fe-S oxidoreductases family 1; E=9e-89 PFAM: PF00919; Uncharacterized protein family UPF00; E=3.2e-35 NP_869666.1 best DB hits: BLAST: swissprot:Q53638; SYK_STAAU LYSYL-TRNA SYNTHETASE (LYSINE--TRNA; E=1e-116 swissprot:P37477; SYK_BACSU LYSYL-TRNA SYNTHETASE (LYSINE--TRNA; E=1e-114 swissprot:Q9KGG4; SYK_BACHD LYSYL-TRNA SYNTHETASE (LYSINE--TRNA; E=1e-111 COG: BS_lysS; COG1190 Lysyl-tRNA synthetase class II; E=1e-115 PFAM: PF01336; OB-fold nucleic acid binding dom; E=5.9e-12 PF01409; tRNA synthetases class II (F); E=0.46 PF00152; tRNA synthetases class II (D, K; E=7e-136 NP_869669.1 PMID: 9163424 best DB hits: BLAST: swissprot:P74178; YB78_SYNY3 HYPOTHETICAL 69.1 KD PROTEIN SLL1178; E=1e-175 gb:AAK00162.1; AF222753_17 (AF222753) nodulation protein NolO; E=8e-78 swissprot:P55474; NOLO_RHISN NODULATION PROTEIN NOLNO -----; E=1e-76 COG: sll1178; COG2192 Predicted carbamoyl transferase, NodU family; E=1e-176 PFAM: PF02543; Carbamoyltransferase; E=4.4e-130 NP_869672.1 PMID: 8590279 best DB hits: BLAST: swissprot:P54148; Y537_SYNY3 AMMONIUM TRANSPORTER SLL0537; E=9e-88 swissprot:P54147; Y108_SYNY3 AMMONIUM TRANSPORTER SLL0108; E=1e-70 gb:AAB89503.1; (AE000982) ammonium transporter (amt-2); E=2e-66 COG: sll0537; COG0004 Ammonia permeases; E=8e-89 VC1084; COG0642 Sensory transduction histidine kinases; E=2e-33 MTH661; COG0004 Ammonia permeases; E=1e-32 PFAM: PF00909; Ammonium Transporter Family; E=1.9e-133 PF00512; His Kinase A (phosphoacceptor; E=6.1e-05 PF02518; Histidine kinase-, DNA gyrase; E=3.7e-25 NP_869674.1 PMID: 8706836 best DB hits: BLAST: pir:S71362; threonine synthase (EC 4.2.99.2) precursor - Arabidopsis; E=1e-126 pir:T08545; threonine synthase (EC 4.2.99.2) precursor - Arabidopsis; E=1e-126 gb:AAF74984.1; AF082894_1 (AF082894) threonine synthase [Solanum; E=1e-125 COG: MJ1465; COG0498 Threonine synthase; E=7e-58 PFAM: PF00291; Pyridoxal-phosphate dependent enzyme; E=2.1e-62 NP_869677.1 PMID: 10360571 best DB hits: BLAST: pir:A72417; sugar ABC transporter, periplasmic sugar-binding protein; E=2e-17 ddbj:BAB07559.1; (AP001520) sugar ABC transporter (sugar-binding; E=3e-15 ddbj:BAB07167.1; (AP001518) sugar ABC transporter (sugar-binding; E=4e-09 COG: TM0114; COG1879 Periplasmic sugar-binding proteins; E=2e-18 NP_869679.1 PMID: 9679194 best DB hits: BLAST: pir:H71040; probable phosphoesterase (EC 3.1.-.-) PH1616 -; E=1e-26 swissprot:Q58322; Y912_METJA HYPOTHETICAL PROTEIN MJ0912 -----; E=8e-25 pir:A75174; hypothetical protein PAB1999 - Pyrococcus abyssi (strain; E=2e-24 COG: PH1616; COG0639 Diadenosine tetraphosphatase and related; E=1e-27 NP_869680.1 best DB hits: BLAST: swissprot:Q58322; Y912_METJA HYPOTHETICAL PROTEIN MJ0912 -----; E=7e-31 pir:H71040; probable phosphoesterase (EC 3.1.-.-) PH1616 -; E=2e-26 pir:A75174; hypothetical protein PAB1999 - Pyrococcus abyssi (strain; E=4e-25 COG: MJ0912; COG0639 Diadenosine tetraphosphatase and related; E=7e-32 PFAM: PF01143; Uncharacterized phosphoesterase fami; E=0.086 NP_869682.1 best DB hits: BLAST: gb:AAA96788.1; (U51683) OMP1 precursor [Brucella abortus]; E=1e-14 pir:C70412; outer membrane protein - Aquifex aeolicus ----- gb:; E=5e-12 pir:H83190; probable outer membrane protein PA3648 [imported] -; E=1e-10 COG: aq_1300; COG0729 Predicted outer membrane protein; E=5e-13 PFAM: PF01103; Bacterial surface antigen; E=0.00093 NP_869683.1 PMID: 9403685 best DB hits: BLAST: pir:B70199; outer membrane protein homolog - Lyme disease spirochete; E=6e-17 pir:C70412; outer membrane protein - Aquifex aeolicus ----- gb:; E=3e-16 gb:AAA96788.1; (U51683) OMP1 precursor [Brucella abortus]; E=2e-15 COG: BB0795; COG0729 Predicted outer membrane protein; E=6e-18 PFAM: PF01103; Bacterial surface antigen; E=1.3e-16 NP_869686.1 PMID: 9163424 best DB hits: BLAST: swissprot:P55607; Y4OV_RHISN HYPOTHETICAL 30.2 KD PROTEIN Y4OV; E=8e-81 ddbj:BAB10918.1; (AB013389) gene_id:K1F13.7~similar to unknown; E=6e-75 gb:AAG60875.1; AF322012_180 (AF322013) ID407 [Bradyrhizobium; E=2e-29 PFAM: PF01884; PcrB family; E=0.34 NP_869687.1 best DB hits: BLAST: swissprot:P55606; Y4OU_RHISN HYPOTHETICAL PROTEIN Y4OU PRECURSOR; E=3e-85 ddbj:BAB10918.1; (AB013389) gene_id:K1F13.7~similar to unknown; E=1e-80 NP_869689.1 PMID: 8497190 best DB hits: BLAST: swissprot:Q02998; YH19_RHOCA HYPOTHETICAL 104.1 KD PROTEIN IN HYPE; E=2e-90 pir:H83132; probable sensorresponse regulator hybrid PA4112; E=7e-67 pir:S75136; sensory transduction histidine kinase slr2104 -; E=4e-64 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=2e-49 PFAM: PF01339; CheB methylesterase; E=1.5e-09 PF01739; CheR methyltransferase; E=7e-68 PF00989; PAS domain; E=1.2e-05 NP_869695.1 best DB hits: BLAST: pir:F83054; conserved hypothetical protein PA4738 [imported] -; E=1e-05 swissprot:P32691; YJBJ_ECOLI PROTEIN YJBJ ----- pir: D65212; E=2e-05 embl:CAB98302.2; (AL390114) probable 8.3 Kd protein in dinf-qor; E=0.032 COG: PA4738; COG3237 Uncharacterized BCR; E=1e-06 NP_869698.1 PMID: 10567266 best DB hits: BLAST: pir:H75351; conserved hypothetical protein - Deinococcus radiodurans; E=3e-06 gb:AAG20306.1; (AE005104) Vng2170h [Halobacterium sp. NRC-1]; E=0.81 COG: DR1804; COG1396 Predicted transcriptional regulators; E=3e-07 NP_869699.1 PMID: 11248100 best DB hits: BLAST: gb:AAK03637.1; (AE006192) unknown [Pasteurella multocida]; E=7e-25 gb:AAG50796.1; AC074309_13 (AC074309) unknown protein [Arabidopsis; E=0.009 pir:T36821; hypothetical protein SCI35.08c - Streptomyces coelicolor; E=0.15 PFAM: PF00583; Acetyltransferase (GNAT) family; E=6.2e-09 NP_869700.1 PMID: 9083067 best DB hits: BLAST: swissprot:P56558; OGT1_RAT UDP-N-ACETYLGLUCOSAMINE--PEPTIDE; E=9e-05 gb:AAF31458.1; (AF223393) HRNT1 [Homo sapiens]; E=9e-05 gb:AAA62535.1; (U21320) contains TPR domain-like repeats; E=0.003 PFAM: PF00515; TPR Domain; E=0.00017 NP_869703.1 best DB hits: BLAST: pir:T30321; hypothetical protein - Lactococcus lactis plasmid; E=0.015 NP_869708.1 best DB hits: BLAST: pir:F75258; hypothetical protein - Deinococcus radiodurans (strain; E=3e-16 pir:T35249; hypothetical protein SC5F2A.07 - Streptomyces coelicolor; E=4e-04 NP_869709.1 best DB hits: PFAM: PF01226; Formate/nitrite transporter; E=0.8 NP_869710.1 best DB hits: BLAST: pir:D75324; hypothetical protein - Deinococcus radiodurans (strain; E=7e-14 pir:C83546; hypothetical protein PA0806 [imported] - Pseudomonas; E=9e-11 embl:CAB92195.1; (AL356592) membrane protein.; E=0.13 NP_869711.1 best DB hits: BLAST: pir:C70127; gufA protein homolog - Lyme disease spirochete -----; E=2e-05 pir:T29905; hypothetical protein F59A3.4 - Caenorhabditis elegans; E=0.002 pir:E75052; gufA protein homolog PAB1443 - Pyrococcus abyssi (strain; E=0.027 COG: BB0219; COG0428 Predicted divalent heavy-metal cations transporter; E=2e-06 NP_869712.1 best DB hits: BLAST: ddbj:BAA95845.1; (AP002070) Similar to Arabidopsis thaliana low; E=0.053 gb:AAF26091.1; AC012393_17 (AC012393) low temperature and salt; E=0.069 gb:AAF26090.1; AC012393_16 (AC012393) low temperature and salt; E=0.088 PFAM: PF01679; Uncharacterized protein family UPF00; E=1.8e-13 NP_869713.1 best DB hits: BLAST: embl:CAB62729.1; (AL133423) oxidoreductase [Streptomyces; E=1e-81 gb:AAG19273.1; (AE005023) quinone oxidoreductase; YfmJ; E=1e-77 pir:A69813; quinone oxidoreductase homolog yfmJ - Bacillus subtilis; E=6e-76 COG: VNG0815G; COG2130 NADP-dependent oxidoreductases; E=1e-78 PA5234; COG0604 NADPH:quinone reductase and related Zn-dependent; E=5e-10 Ta0841; COG1064 Zn-dependent alcohol dehydrogenases; E=2e-05 PFAM: PF00022; Actin; E=0.28 PF00107; Zinc-binding dehydrogenases; E=7.7e-37 NP_869714.1 PMID: 8297211 best DB hits: BLAST: swissprot:O32507; GABD_DEIRA SUCCINATE-SEMIALDEHYDE DEHYDROGENASE; E=1e-118 gb:AAD19405.1; (AF102543) succinic semialdehyde dehydrogenase; E=1e-111 swissprot:Q55585; GABD_SYNY3 PROBABLE SUCCINATE-SEMIALDEHYDE; E=1e-107 COG: DRA0343; COG1012 NAD-dependent aldehyde dehydrogenases; E=1e-119 PFAM: PF00171; Aldehyde dehydrogenase; E=2.7e-118 NP_869715.1 best DB hits: BLAST: pir:H83564; probable short-chain dehydrogenase PA0658 [imported] -; E=1e-42 pir:E70761; probable ketoacyl reductase - Mycobacterium tuberculosis; E=8e-38 gb:AAK03000.1; (AE006130) unknown [Pasteurella multocida]; E=4e-34 COG: PA0658; COG0300 Short-chain dehydrogenases of various substrate; E=1e-43 Rv1050; COG1028 Dehydrogenases with different specificities (related; E=5e-23 YMR226c; COG0300 Short-chain dehydrogenases of various substrate; E=2e-22 PFAM: PF00106; short chain dehydrogenase; E=1.6e-45 NP_869718.1 PMID: 8096175 best DB hits: BLAST: pir:S36340; sugE protein - Escherichia coli ----- embl:; E=6e-17 gb:AAG59349.1; AE005648_11 (AE005648) suppresses groEL, may be; E=4e-16 pir:S56376; sugES protein - Escherichia coli ----- gb:; E=6e-16 COG: sugE; COG2076 Membrane transporters of cations and cationic drugs; E=6e-17 NMB0393; COG2076 Membrane transporters of cations and cationic; E=6e-04 BH0840; COG2076 Membrane transporters of cations and cationic drugs; E=0.004 PFAM: PF00893; Integral membrane protein DUF7; E=3e-37 NP_869719.1 best DB hits: BLAST: pir:S62728; transposase - phage D3112 ----- embl: CAA60956.1; E=0.69 NP_869721.1 PMID: 8196548 best DB hits: BLAST: swissprot:P43505; MTRC_NEIGO MEMBRANE FUSION PROTEIN MTRC; E=3e-07 pir:S40252; MtrC protein - Neisseria gonorrhoeae ----- pir:; E=4e-07 pir:H81825; membrane fusion protein NMA1970 [imported] - Neisseria; E=1e-06 COG: NMB1716; COG0845 Membrane-fusion protein; E=1e-07 PA2430; COG1566 Multidrug resistance efflux pump; E=5e-05 PA4599; COG0845 Membrane-fusion protein; E=6e-04 PFAM: PF00529; HlyD family secretion protein; E=0.061 NP_869722.1 best DB hits: BLAST: pir:B83627; probable RND efflux transporter PA0158 [imported] -; E=9e-84 pir:F82829; acriflavin resistance protein XF0243 [imported] - Xylella; E=1e-81 pir:B82604; cation efflux system protein XF2083 [imported] - Xylella; E=6e-77 COG: PA0158; COG0841 Cation/multidrug efflux pump; E=8e-85 PFAM: PF00873; AcrB/AcrD/AcrF family; E=8.1e-17 NP_869723.1 best DB hits: BLAST: ddbj:BAB06554.1; (AP001516) BH2835~unknown conserved protein; E=5e-27 swissprot:P54168; YPGQ_BACSU HYPOTHETICAL 23.1 KD PROTEIN IN; E=7e-22 gb:AAK04163.1; AE006245_2 (AE006245) conserved hypothetical; E=6e-17 COG: BH2835; COG1418 Predicted HD superfamily hydrolase; E=5e-28 AF1423; COG1078 HD superfamily phosphohydrolases; E=0.002 PFAM: PF01966; HD domain; E=3.6e-12 NP_869724.1 best DB hits: BLAST: ddbj:BAB04002.1; (AP001508) BH0283~unknown conserved protein; E=2e-62 pir:E83199; conserved hypothetical protein PA3578 [imported] -; E=3e-55 pir:A83301; hypothetical protein PA2770 [imported] - Pseudomonas; E=8e-52 COG: BH0283; COG0384 Predicted epimerase, PhzC/PhzF homolog; E=2e-63 PFAM: PF02567; Phenazine biosynthesis-like pro; E=1.5e-27 PF01678; Diaminopimelate epimerase; E=0.53 NP_869725.1 PMID: 9835490 best DB hits: BLAST: embl:CAA08848.1; (AJ009820) hypothetical protein [Salmonella; E=2e-16 gb:AAG17708.1; AF282595_4 (AF282595) unknown [Klebsiella; E=2e-16 pir:S74655; hypothetical protein sll1671 - Synechocystis sp. (strain; E=2e-15 COG: sll1671; COG0454 Histone acetyltransferase HPA2 and related; E=2e-16 PFAM: PF00583; Acetyltransferase (GNAT) family; E=3.9e-17 NP_869726.1 best DB hits: BLAST: pir:T36405; probable marR-family transcriptional regulator -; E=2e-04 gb:AAG00065.1; (U18133) CbaR [Comamonas testosteroni]; E=8e-04 pir:T29126; hypothetical protein SC1F2.17 - Streptomyces coelicolor; E=0.002 COG: XF0216; COG1846 Transcriptional regulators; E=4e-04 PFAM: PF01047; MarR family; E=2.9e-14 NP_869728.1 best DB hits: BLAST: gb:AAD42769.1; AF121849_1 (AF121849) SigG [Synechococcus sp. PCC; E=9e-12 pir:S77368; transcription initiation factor sigma E slr1545 -; E=1e-11 pir:C82583; RNA polymerase sigma-H factor XF2239 [imported] -; E=1e-08 COG: slr1545; COG1595 DNA-directed RNA polymerase specialized sigma; E=1e-12 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=0.00072 PF00140; Sigma-70 factor; E=0.028 NP_869729.1 best DB hits: BLAST: pir:T36717; probable serinethreonine protein kinase - Streptomyces; E=8e-35 ddbj:BAB06223.1; (AP001515) serinethreonine protein kinase; E=4e-34 pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=9e-34 COG: BH2504_1; COG0515 Serine/threonine protein kinases; E=3e-35 PFAM: PF00069; Protein kinase domain; E=5.1e-31 NP_869730.1 best DB hits: BLAST: gb:AAD39269.1; AC007203_1 (AC007203) UDP-glucose:sterol; E=9e-62 embl:CAB06082.1; (Z83833) UDP-glucose:sterol glucosyltransferase; E=9e-59 gb:AAF27006.1; AC016827_17 (AC016827) UDP-glucose:sterol; E=9e-59 COG: YLR189c_2; COG1819 Glycosyl transferases, related to; E=4e-51 NP_869732.1 PMID: 11157277 best DB hits: BLAST: gb:AAG47946.1; AF222787_1 (AF222787) cycloinulo-oligosaccharide; E=2e-04 pir:T35944; probable beta-galactosidase - Streptomyces coelicolor; E=5e-04 pir:T18266; cycloinulo-oligosaccharide fructanotransferase (EC; E=0.030 PFAM: PF02012; BNR repeat; E=0.23 NP_869735.1 best DB hits: BLAST: embl:CAB76936.1; (AJ275974) cellulosomal protein; E=6e-11 swissprot:Q45535; COTH_BACSU INNER SPORE COAT PROTEIN H -----; E=0.77 NP_869736.1 best DB hits: BLAST: ddbj:BAB10498.1; (AB013391) cycloartenol synthase [Arabidopsis; E=0.18 NP_869737.1 PMID: 8633080 best DB hits: BLAST: gb:AAC06216.1; (AF051690) iron-uptake factor [Pseudomonas; E=5e-17 pir:C83081; probable oxidoreductase PA4513 [imported] - Pseudomonas; E=5e-17 pir:B82329; sulfite reductase (NADPH) flavoprotein alpha-component; E=3e-10 COG: PA4513_2; COG0369 Sulfite reductase flavoprotein subunit; E=7e-17 VC0002; COG0716 Flavodoxins; E=2e-05 PFAM: PF00258; Flavodoxin; E=4.7e-29 NP_869738.1 PMID: 20365717 best DB hits: BLAST: pir:E82786; hypothetical protein XF0595 [imported] - Xylella; E=2e-63 pir:A81079; conserved hypothetical protein NMB1475 [imported] -; E=0.33 pir:A81864; probable NMA1686 [imported] - Neisseria meningitidis; E=0.79 NP_869739.1 PMID: 20365717 best DB hits: BLAST: pir:F82786; conserved hypothetical protein XF0596 [imported] -; E=4e-45 pir:G75353; hypothetical protein - Deinococcus radiodurans (strain; E=3e-08 NP_869740.1 PMID: 20365717 best DB hits: BLAST: pir:G82786; conserved hypothetical protein XF0597 [imported] -; E=2e-46 gb:AAG02156.1; AF212041_12 (AF212041) plasmolipin [Zymomonas; E=1e-20 pir:F75353; hypothetical protein - Deinococcus radiodurans (strain; E=1e-09 COG: XF0597; COG3295 Uncharacterized BCR; E=2e-47 NP_869741.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_869742.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_869744.1 PMID: 8843436 best DB hits: BLAST: embl:CAC10293.1; (AL442629) ABC transport system ATP; E=3e-49 embl:CAB81857.1; (AL161691) ABC-transporter ATP-binding; E=6e-48 embl:CAB89461.1; (AL354048) ABC transporter ATP-binding; E=5e-47 COG: AF1469; COG1136 ABC-type (unclassified) transport system, ATPase; E=3e-47 PFAM: PF00485; Phosphoribulokinase / Uridine; E=0.21 PF00005; ABC transporter; E=2.1e-56 NP_869746.1 PMID: 11694506 best DB hits: BLAST: pir:B83340; hypothetical protein PA2451 [imported] - Pseudomonas; E=2e-32 swissprot:O51900; FES_ERWCH ENTEROCHELIN ESTERASE (FERRIC; E=6e-20 gb:AAC46181.1; (U97227) ferric enterochelin esterase homolog; E=2e-18 COG: PA2451; COG2382 Enterochelin esterase and related enzymes; E=2e-33 NP_869747.1 PMID: 8843436 best DB hits: BLAST: embl:CAC09551.1; (AL442120) ABC transport system; E=1e-06 pir:G70821; hypothetical protein Rv0987 - Mycobacterium tuberculosis; E=0.005 ddbj:BAB06840.1; (AP001517) BH3121~unknown conserved protein; E=0.011 COG: Rv0987_1; COG0577 Predicted permease; E=8e-04 PFAM: PF02687; Predicted permease; E=3.3e-13 NP_869748.1 PMID: 9389475 best DB hits: BLAST: gb:AAB89781.1; (AE001001) ABC transporter ATP-binding protein; E=2e-46 embl:CAB89461.1; (AL354048) ABC transporter ATP-binding; E=2e-45 embl:CAC10293.1; (AL442629) ABC transport system ATP; E=3e-45 COG: AF1469; COG1136 ABC-type (unclassified) transport system, ATPase; E=2e-47 PFAM: PF01580; FtsK/SpoIIIE family; E=0.7 PF00485; Phosphoribulokinase / Uridine ki; E=0.21 PF00005; ABC transporter; E=7.9e-61 NP_869750.1 PMID: 8843436 best DB hits: BLAST: embl:CAB89462.1; (AL354048) ABC transporter integral; E=2e-16 embl:CAC09551.1; (AL442120) ABC transport system; E=2e-11 embl:CAB62838.1; (AL133443) hypothetical protein L5529.07; E=3e-04 COG: AF1017; COG0577 Predicted permease; E=3e-05 PFAM: PF02687; Predicted permease; E=2.3e-12 NP_869751.1 PMID: 7602583 PMID: 7827089 PMID: 10512705 PMID: 10622255 best DB hits: BLAST: pir:E83006; two-component response regulator NtrC PA5125 [imported]; E=9e-89 swissprot:P41789; NTRC_SALTY NITROGEN REGULATION PROTEIN NR(I); E=1e-85 gb:AAG59057.1; AE005617_6 (AE005617) response regulator for gln; E=2e-85 COG: PA5125; COG2204 AAA superfamily ATPases with N-terminal receiver; E=8e-90 PFAM: PF00072; Response regulator receiver doma; E=1e-31 PF00158; Sigma-54 interaction domain; E=2.1e-114 NP_869752.1 PMID: 7553451 best DB hits: BLAST: pir:A82630; two-component system, sensor protein XF1849 [imported] -; E=1e-11 pir:S35265; ntrB protein - Azospirillum brasilense ----- embl:; E=1e-11 swissprot:P45670; NTRB_AZOBR NITROGEN REGULATION PROTEIN NTRB; E=3e-11 COG: XF1849; COG0642 Sensory transduction histidine kinases; E=1e-12 PFAM: PF00672; HAMP domain; E=9.9e-11 PF00512; His Kinase A (phosphoacceptor) doma; E=0.00015 PF02518; Histidine kinase-, DNA gyrase B-, p; E=4.8e-20 NP_869753.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_869754.1 PMID: 9734815 best DB hits: BLAST: ddbj:BAB09005.1; (AB012239) gene_id:K11J9.14~unknown protein; E=0.63 PFAM: PF00036; EF hand; E=0.00096 NP_869755.1 PMID: 10984043 best DB hits: BLAST: pir:G83341; hypothetical protein PA2428 [imported] - Pseudomonas; E=1e-102 gb:AAB09718.1; (U12891) ORF1 [Pseudomonas aeruginosa]; E=1e-101 pir:B82287; conserved hypothetical protein VC0728 [imported] -; E=2e-81 COG: PA2428; COG2326 Uncharacterized BCR; E=1e-103 NP_869757.1 PMID: 7478940 best DB hits: BLAST: pir:D82295; nptA protein VC0676 [imported] - Vibrio cholerae (group; E=9e-73 gb:AAC42026.1; (L33878) renal cortical Na+Pi co-transporter [Mus; E=1e-18 gb:AAC52361.1; (U22465) NaPi-cotransporter [Mus musculus]; E=1e-18 COG: VC0676; COG1283 Na+/phosphate symporter; E=9e-74 PFAM: PF02659; Domain of unknown function DUF; E=0.051 PF02690; Na+/Pi-cotransporter; E=2.8e-96 NP_869758.1 PMID: 9634230 best DB hits: BLAST: pir:E70933; hypothetical protein Rv0574c - Mycobacterium; E=0.88 NP_869759.1 PMID: 10470850 best DB hits: BLAST: ddbj:BAB09588.1; (AB018118) gene_id:MRI1.6~pir D64592~similar to; E=7e-09 pir:G83627; probable nucleoside hydrolase PA0143 [imported] -; E=0.010 COG: PA0143; COG1957 Inosine-uridine nucleoside N-ribohydrolase; E=0.001 PFAM: PF01156; Inosine-uridine preferring nucle; E=0.022 PF02012; BNR repeat; E=0.32 NP_869762.1 PMID: 10984043 best DB hits: BLAST: pir:B70979; hypothetical protein Rv3273 - Mycobacterium tuberculosis; E=2e-36 pir:D83631; probable sulfate transporter PA0103 [imported] -; E=3e-31 ddbj:BAB20551.1; (AB040415) Mig5 [Salmonella enterica serovar; E=9e-24 COG: PA0103; COG0659 Sulfate permease and related transporters (MFS; E=2e-32 DR2238; COG0288 Carbonic anhydrase; E=2e-24 slr0096; COG0659 Sulfate permease and related transporters (MFS; E=4e-15 PFAM: PF00916; Sulfate transporter family; E=1.5e-39 PF00484; Carbonic anhydrase; E=5.9e-12 PF02878; Phosphoglucomutase/phosphomann; E=0.17 NP_869765.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli NP_869767.1 PMID: 8905231 PMID: 8407802 PMID: 7651136 best DB hits: BLAST: pir:F83335; RND multidrug efflux transporter MexF PA2494 [imported] -; E=0.0 pir:T30830; hypothetical protein mexF - Pseudomonas aeruginosa -----; E=0.0 pir:D83206; probable RND efflux transporter PA3522 [imported] -; E=0.0 COG: PA2494; COG0841 Cation/multidrug efflux pump; E=0.0 PFAM: PF00873; AcrB/AcrD/AcrF family; E=0 NP_869768.1 PMID: 10984043 best DB hits: BLAST: pir:E83335; RND multidrug efflux membrane fusion protein MexE; E=1e-54 pir:T30829; hypothetical protein mexE - Pseudomonas aeruginosa; E=1e-52 pir:E83206; probable RND efflux membrane fusion protein precursor; E=2e-42 COG: PA2493; COG0845 Membrane-fusion protein; E=1e-55 PFAM: PF00364; Biotin-requiring enzyme; E=0.0006 PF00529; HlyD family secretion protein; E=4e-20 NP_869769.1 PMID: 11473263 PMID: 9068629 best DB hits: BLAST: pir:A82692; transcriptional regulator MarR family XF1354 [imported] -; E=1e-04 embl:CAB95985.1; (AL360034) MarR-family regulatory; E=2e-04 gb:AAB87745.1; (U89914) hypothetical 16.1 kDa transcriptional; E=2e-04 COG: XF1354; COG1846 Transcriptional regulators; E=1e-05 PFAM: PF01047; MarR family; E=9.8e-17 NP_869770.1 PMID: 10761919 best DB hits: BLAST: pir:D81775; conserved hypothetical protein NMA2048 [imported] -; E=3e-17 pir:F81198; conserved hypothetical protein NMB0437 [imported] -; E=4e-17 gb:AAC61685.1; (AF052517) CDG1D [Acetobacter xylinus]; E=1e-15 COG: NMB0437; COG1959 Predicted transcriptional regulator; E=4e-18 PFAM: PF02082; Uncharacterized protein family UPF00; E=1.3e-33 NP_869775.1 PMID: 9384377 best DB hits: BLAST: pir:F69688; response regulator aspartate phosphatase rapC - Bacillus; E=0.79 NP_869776.1 best DB hits: BLAST: ddbj:BAA91540.1; (AK001182) unnamed protein product [Homo; E=0.027 embl:CAB98267.1; (AJ276171) ASPIC [Homo sapiens]; E=0.027 embl:CAB98268.1; (AJ276171) ASPIC [Homo sapiens] ----- embl:; E=0.027 NP_869777.1 PMID: 10952301 best DB hits: BLAST: pir:T17197; adenylate cyclase homolog - Spirulina platensis -----; E=5e-17 pir:G82244; response regulator VC1087 [imported] - Vibrio cholerae; E=1e-15 ddbj:BAA14000.1; (D89625) adenylate cyclase [Anabaena sp.]; E=6e-14 COG: VC1087_1; COG0784 CheY-like receiver domains; E=2e-16 PA2881; COG2204 AAA superfamily ATPases with N-terminal receiver; E=2e-12 VC1086_1; COG0784 CheY-like receiver domains; E=4e-11 PFAM: PF00072; Response regulator receiver doma; E=8e-19 NP_869778.1 PMID: 9045826 PMID: 10564511 best DB hits: BLAST: pir:F83324; probable two-component sensor PA2571 [imported] -; E=5e-36 pir:D82244; sensory box sensor histidine kinase VC1084 [imported] -; E=1e-35 pir:C82425; sensor histide kinase VCA0719 [imported] - Vibrio; E=2e-34 COG: PA2571; COG0642 Sensory transduction histidine kinases; E=5e-37 PFAM: PF00989; PAS domain; E=1.1e-06 PF00512; His Kinase A (phosphoacceptor) doma; E=0.001 PF02518; Histidine kinase-, DNA gyrase B-, p; E=2.9e-30 NP_869780.1 PMID: 20365717 best DB hits: BLAST: pir:A82699; conserved hypothetical protein XF1304 [imported] -; E=4e-20 pir:T39090; probable integral membrane protein - fission yeast; E=1e-09 embl:CAB62252.1; (Y18559) hypothetical protein [Pichia farinosa]; E=2e-08 COG: XF1304; COG3163 Uncharacterized ACR; E=4e-21 BH0081; COG2966 Uncharacterized BCR; E=1e-06 MTH749; COG3163 Uncharacterized ACR; E=2e-04 NP_869781.1 Transcriptional regulator that represses the manganese transporter MntH when manganese is present NP_869782.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_869784.1 best DB hits: BLAST: pir:T37061; probable secreted protein - Streptomyces coelicolor; E=8e-19 pir:T35483; hypothetical protein SC6C5.12c SC6C5.12c - Streptomyces; E=2e-15 ddbj:BAB15080.1; (AK025164) unnamed protein product [Homo; E=7e-12 COG: VC2238; COG3021 Uncharacterized BCR; E=0.001 PFAM: PF01260; AP endonuclease 1; E=0.8 NP_869785.1 PMID: 8905231 best DB hits: BLAST: pir:S77018; hypothetical protein sll0788 - Synechocystis sp. (strain; E=0.12 NP_869787.1 PMID: 11759840 best DB hits: BLAST: embl:CAB93418.1; (AL357524) transposase [Streptomyces; E=0.60 NP_869788.1 PMID: 10984043 best DB hits: BLAST: pir:A83243; CsaA protein PA3221 [imported] - Pseudomonas aeruginosa; E=9e-25 ddbj:BAB05504.1; (AP001513) chaperonin involved in protein; E=2e-23 swissprot:P37584; CSAA_BACSU CSAA PROTEIN ----- pir: E69607; E=7e-23 COG: PA3221; COG0073 EMAP domain; E=9e-26 PFAM: PF01588; tRNA binding domain; E=4.9e-17 NP_869791.1 PMID: 7744061 best DB hits: BLAST: pir:S69336; arylsulfatase (EC 3.1.6.1) - Pseudomonas aeruginosa; E=8e-74 swissprot:P51691; ARS_PSEAE ARYLSULFATASE (ARYL-SULFATE; E=5e-73 gb:AAF71377.1; AF262990_2 (AF262990) arylsulfatase [Klebsiella; E=3e-65 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=5e-74 PFAM: PF00884; Sulfatase; E=2.3e-45 PF00505; HMG (high mobility group) box; E=0.84 PF00884; Sulfatase; E=5.5e-54 NP_869792.1 PMID: 11016950 best DB hits: BLAST: gb:AAG20045.1; (AE005084) chloromuconate cycloisomerase; YkfB1; E=8e-48 gb:AAF28135.1; AF153317_32 (AF153317) YcjG [Shigella dysenteriae]; E=6e-28 swissprot:P51981; YCJG_ECOLI HYPOTHETICAL 34.7 KD PROTEIN IN; E=1e-27 COG: VNG1837G; COG1441 O-succinylbenzoate synthase and related enzymes; E=8e-49 PFAM: PF02746; Mandelate racemase / muconate; E=1.3e-09 PF01188; Mandelate racemase / muconate; E=4.9e-21 NP_869793.1 PMID: 1587462 PMID: 1551459 best DB hits: BLAST: swissprot:P39043; DPP6_BACSH DIPEPTIDYL-PEPTIDASE VI (DPP VI); E=2e-19 pir:A69856; polysugar degrading enzyme homolog ykfC - Bacillus; E=6e-14 ddbj:BAB06726.1; (AP001517) polysugar degrading enzyme; E=7e-14 COG: BS_ykfC; COG0791 Cell wall-associated hydrolases; E=6e-15 BH3007; COG0791 Cell wall-associated hydrolases (invasion-associated; E=6e-15 DR1325_2; COG0791 Cell wall-associated hydrolases; E=2e-12 PFAM: PF00877; NLP/P60 family; E=4.2e-24 NP_869796.1 PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=3e-31 pir:S07089; arylsulfatase (EC 3.1.6.1) - sea urchin (Lytechinus; E=9e-29 swissprot:P14000; ARS_HEMPU ARYLSULFATASE PRECURSOR (ARYL-SULFATE; E=9e-29 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=2e-27 PFAM: PF00884; Sulfatase; E=1.6e-44 NP_869797.1 PMID: 8325651 best DB hits: BLAST: gb:AAA37880.1; (L07921) iduronate sulfatase [Mus musculus]; E=1e-55 gb:AAA16877.1; (L13329) iduronate-2-sulfatase [Homo sapiens]; E=5e-53 gb:AAB33747.1; iduronate-2-sulfatase, IDS {EC 3.1.6.13} [human,; E=2e-52 COG: PA0031; COG3119 Arylsulfatase A and related enzymes; E=8e-36 BS_yfnI; COG1368 Phosphoglycerol transferase and related proteins,; E=4e-05 VC2600; COG3083 Predicted hydrolase of alkaline phosphatase; E=5e-05 PFAM: PF00884; Sulfatase; E=8.7e-22 NP_869799.1 PMID: 7488183 best DB hits: BLAST: pir:JC4397; peroxinectin precursor - signal crayfish ----- embl:; E=2e-65 gb:AAC94959.1; (U68724) polysomal ribonuclease 1 [Xenopus laevis]; E=5e-65 embl:CAA43114.1; (X60703) peroxidase [Mus musculus]; E=8e-65 PFAM: PF00404; Dockerin type I repeat; E=0.11 PF00141; Peroxidase; E=7.8e-06 NP_869801.1 PMID: 10964925 PMID: 7657606 best DB hits: BLAST: gb:AAF47255.1; (AE003464) CG4859 gene product [Drosophila; E=3e-18 gb:AAG33131.1; AF271666_1 (AF271666) matrix metalloproteinase 1; E=3e-18 embl:CAA78248.1; (Z12604) stromelysin-3 [Mus musculus]; E=8e-16 PFAM: PF00404; Dockerin type I repeat; E=0.0079 NP_869802.1 PMID: 11248100 PMID: 7768826 PMID: 7889934 best DB hits: BLAST: gb:AAK03873.1; (AE006215) RpoE [Pasteurella multocida]; E=7e-07 swissprot:P44790; RPOE_HAEIN RNA POLYMERASE SIGMA-E FACTOR; E=2e-06 pir:H82073; RNA polymerase sigma-E factor VC2467 [imported] - Vibrio; E=5e-06 COG: HI0628; COG1595 DNA-directed RNA polymerase specialized sigma; E=2e-07 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=0.4 NP_869803.1 PMID: 1835671 best DB hits: BLAST: pir:T36717; probable serinethreonine protein kinase - Streptomyces; E=1e-31 embl:CAA10713.1; (AJ132604) hypothetical protein [Lactococcus; E=1e-31 pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=3e-31 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=3e-32 PFAM: PF00069; Protein kinase domain; E=9.9e-29 PF00515; TPR Domain; E=0.0026 NP_869805.1 best DB hits: PFAM: PF01011; PQQ enzyme repeat; E=0.34 NP_869807.1 PMID: 97000351 PMID: 2380986 best DB hits: BLAST: embl:CAB92202.1; (AL356592) hydrolase. [Streptomyces; E=2e-33 pir:D70881; hypothetical protein Rv2765 - Mycobacterium tuberculosis; E=3e-29 embl:CAC04055.1; (AL391406) hydrolase (dienelactone; E=9e-23 COG: Rv2765; COG0412 Dienelactone hydrolase and related enzymes; E=3e-30 PFAM: PF02277; Phosphoribosyltransferase; E=0.45 PF00561; alpha/beta hydrolase fold; E=0.6 PF01738; Dienelactone hydrolase; E=2e-34 NP_869808.1 PMID: 10567266 PMID: 9537360 PMID: 8003493 best DB hits: BLAST: pir:F75607; arsenate reductase - Deinococcus radiodurans (strain R1); E=1e-04 swissprot:P45947; ARSC_BACSU ARSENATE REDUCTASE (ARSENICAL PUMP; E=0.001 pir:B70360; arsenate reductase - Aquifex aeolicus ----- gb:; E=0.014 COG: DRA0123; COG0394 Protein-tyrosine-phosphatase; E=1e-05 NP_869810.1 PMID: 10515912 best DB hits: BLAST: pir:D83102; xenobiotic reductase PA4356 [imported] - Pseudomonas; E=5e-92 ddbj:BAA88211.1; (AB025798) NAD(P)H-dependent 2-cyclohexen-1-one; E=1e-91 gb:AAF02539.1; AF154062_1 (AF154062) xenobiotic reductase B; E=1e-87 COG: PA4356; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme; E=4e-93 nemA; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family; E=2e-73 PA2932; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme; E=3e-70 PFAM: PF00724; NADH:flavin oxidoreductase / NAD; E=5.6e-98 NP_869811.1 PMID: 87304248 PMID: 92277668 best DB hits: BLAST: pir:S76928; probable aryl alcohol dehydrogenase (EC 1.1.1.-) -; E=1e-94 pir:S56495; probable aryl alcohol dehydrogenase (EC 1.1.1.-) yjgB -; E=6e-71 swissprot:P27250; YJGB_ECOLI HYPOTHETICAL ZINC-TYPE ALCOHOL; E=6e-71 COG: slr1192; COG1064 Zn-dependent alcohol dehydrogenases; E=9e-96 PFAM: PF00899; ThiF family; E=0.48 PF02826; D-isomer specific 2-hydroxyacid; E=0.48 PF00107; Zinc-binding dehydrogenases; E=5.9e-85 NP_869812.1 PMID: 2678100 best DB hits: BLAST: pir:H82300; probable multidrug resistance protein VC0629 [imported] -; E=3e-51 pir:S76433; cation efflux system protein czcA-2 - Synechocystis sp.; E=4e-42 pir:G64595; acriflavine resistance protein - Helicobacter pylori; E=4e-41 COG: VC0629; COG0841 Cation/multidrug efflux pump; E=3e-52 PFAM: PF00873; AcrB/AcrD/AcrF family; E=1e-43 NP_869813.1 PMID: 10984043 best DB hits: BLAST: pir:A83330; probable RND efflux membrane fusion protein precursor; E=2e-06 gb:AAG57137.1; AE005434_1 (AE005434) membrane protein; E=2e-06 ddbj:BAA15928.1; (D90845) Membrane fusion protein MtrC precursor.; E=4e-06 COG: PA2528; COG0845 Membrane-fusion protein; E=2e-07 PA3892; COG1566 Multidrug resistance efflux pump; E=1e-05 VC0628; COG0845 Membrane-fusion protein; E=4e-05 PFAM: PF00529; HlyD family secretion protein; E=4.2e-07 NP_869814.1 PMID: 10225861 best DB hits: BLAST: pir:A83347; probable outer membrane protein PA2391 [imported] -; E=1e-24 pir:F83329; probable outer membrane lipoprotein precursor PA2525; E=2e-23 gb:AAD05185.1; (AF110185) unknown [Burkholderia pseudomallei]; E=4e-23 COG: PA2391; COG1538 Outer membrane protein; E=1e-25 PFAM: PF02321; Outer membrane efflux protein; E=1.3e-18 NP_869815.1 PMID: 1729216 PMID: 9532806 PMID: 2253626 PMID: 9295270 best DB hits: BLAST: pir:T35404; probable squalene-hopene cyclase - Streptomyces; E=1e-04 pir:A43300; squalene-hopene cyclase (EC 5.4.99.-) - Alicyclobacillus; E=0.008 gb:AAA75452.1; (M73834) squalene-hopene-cyclase [Alicyclobacillus; E=0.008 PFAM: PF01264; Chorismate synthase; E=0.74 PF00432; Prenyltransferase and squalen; E=0.00015 NP_869816.1 PMID: 8674982 best DB hits: BLAST: pir:C81247; arsenate reductase NMB0005 [imported] - Neisseria; E=8e-26 gb:AAG57605.1; AE005479_3 (AE005479) oxidoreductase; E=6e-25 swissprot:P76569; YFGD_ECOLI PROTEIN YFGD ----- pir: F65025; E=6e-25 COG: NMB0005; COG1393 Arsenate reductase and related proteins,; E=8e-27 yfgD; COG1393 Arsenate reductase and related proteins, glutaredoxin; E=7e-26 VC2165; COG1393 Arsenate reductase and related proteins,; E=3e-25 NP_869817.1 PMID: 11337471 best DB hits: BLAST: gb:AAK04894.1; AE006313_1 (AE006313) HYPOTHETICAL PROTEIN; E=0.051 pir:T02333; hypothetical protein F13P17.29 - Arabidopsis thaliana; E=0.093 pir:T34378; hypothetical protein T25G12.7 - Caenorhabditis elegans; E=0.095 PFAM: PF01118; Semialdehyde dehydrogenase, NA; E=0.095 NP_869819.1 PMID: 20138370 best DB hits: BLAST: pir:B81280; probable periplasmic cytochrome C Cj1357c [imported] -; E=1e-50 embl:CAB53160.1; (AJ245540) catalytic subunit of cytochrome c; E=5e-42 embl:CAB37320.1; (AJ133037) cytochrome c nitrite reductase; E=5e-37 COG: Cj1357c; COG3303 Nitrite reductase, periplasmic cytochrome c subunit; E=9e-52 PFAM: PF02335; Cytochrome c552; E=0.032 NP_869820.1 PMID: 20138370 best DB hits: BLAST: pir:C81280; probable periplasmic cytochrome C Cj1358c [imported] -; E=1e-21 embl:CAB53159.1; (AJ245540) small subunit of cytochrome c nitrite; E=1e-18 pir:A82138; cytochrome c-type protein YecK VC1951 [imported] -; E=1e-05 COG: Cj1358c; COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme; E=1e-22 NP_869821.1 PMID: 20086437 best DB hits: BLAST: pir:S76179; hypothetical protein - Synechocystis sp. (strain PCC; E=3e-04 embl:CAA76284.1; (Y16560) MPT-synthase sulfurylase [Synechococcus; E=4e-04 gb:AAF33130.1; AF196567_6 (AF196567) sulfurylase; E=0.003 COG: sll1536_2; COG0607 Rhodanese-related sulfurtransferases; E=3e-05 PFAM: PF00581; Rhodanese-like domain; E=2.8e-06 NP_869823.1 PMID: 10567266 best DB hits: BLAST: pir:D75273; transcriptional regulator, MerR family - Deinococcus; E=9e-08 embl:CAB61592.1; (AL133210) DNA polymerase III beta; E=1e-05 embl:CAB88450.1; (AL353815) merR-family transcriptional; E=1e-05 COG: DR2448; COG0789 Predicted transcriptional regulators; E=8e-09 NP_869824.1 PMID: 9679194 best DB hits: BLAST: pir:F71051; hypothetical protein PH1109 - Pyrococcus horikoshii; E=3e-12 pir:H72254; conserved hypothetical protein - Thermotoga maritima; E=6e-12 pir:F75091; hypothetical protein PAB1624 - Pyrococcus abyssi (strain; E=8e-12 COG: PH1109; COG1832 Uncharacterized ACR; E=3e-13 AF0932; COG1042 Acyl-CoA synthetase (NDP forming); E=8e-11 Ta1005; COG1832 Uncharacterized ACR; E=2e-09 PFAM: PF02629; Uncharacterized ACR, COG1832; E=4e-13 NP_869825.1 PMID: 10567266 best DB hits: BLAST: pir:E75584; conserved hypothetical protein - Deinococcus radiodurans; E=2e-54 ddbj:BAA86645.1; (AB033763) hypothetical protein [Staphylococcus; E=4e-45 pir:T44111; conserved hypothetical protein [imported] -; E=2e-33 COG: DRA0304_1; COG0491 Zn-dependent hydrolases, including glyoxylases; E=5e-42 MTH1096; COG0607 Rhodanese-related sulfurtransferases; E=6e-17 BS_yrkH; COG0491 Zn-dependent hydrolases, including glyoxylases; E=2e-16 PFAM: PF00753; Metallo-beta-lactamase superfamil; E=6.1e-25 PF00581; Rhodanese-like domain; E=0.0017 NP_869826.1 PMID: 20365717 best DB hits: BLAST: pir:E82766; conserved hypothetical protein XF0768 [imported] -; E=2e-09 pir:C81827; hypothetical protein NMA1982 [imported] - Neisseria; E=8e-04 pir:F81048; conserved hypothetical protein NMB1727 [imported] -; E=0.001 NP_869828.1 PMID: 8688087 best DB hits: BLAST: swissprot:Q57951; Y531_METJA HYPOTHETICAL PROTEIN MJ0531 -----; E=4e-10 ddbj:BAB03102.1; (AP002040) gene_id:MEC18.3~unknown protein; E=2e-08 pir:A69220; conserved hypothetical protein MTH898 - Methanobacterium; E=2e-08 COG: MJ0531; COG0589 Universal stress protein UspA and related; E=4e-11 PFAM: PF00582; Universal stress protein family; E=3.9e-11 NP_869830.1 PMID: 9371463 best DB hits: BLAST: pir:A69220; conserved hypothetical protein MTH898 - Methanobacterium; E=1e-07 gb:AAD46412.1; AF096262_1 (AF096262) ER6 protein [Lycopersicon; E=1e-05 gb:AAK04173.1; AE006246_3 (AE006246) conserved hypothetical; E=2e-05 COG: MTH898; COG0589 Universal stress protein UspA and related; E=1e-08 PFAM: PF00582; Universal stress protein family; E=4e-11 NP_869832.1 PMID: 8905231 best DB hits: BLAST: swissprot:P74148; YD88_SYNY3 HYPOTHETICAL 17.3 KD PROTEIN SLL1388; E=2e-05 gb:AAG20091.1; (AE005088) Vng1898c [Halobacterium sp. NRC-1]; E=5e-05 swissprot:Q57951; Y531_METJA HYPOTHETICAL PROTEIN MJ0531 -----; E=7e-04 COG: sll1388; COG0589 Universal stress protein UspA and related; E=2e-06 PFAM: PF00582; Universal stress protein family; E=0.04 NP_869833.1 best DB hits: BLAST: gb:AAG45333.1; AF273214_1 (AF273214) SasR [Myxococcus xanthus]; E=3e-83 swissprot:Q06065; ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY; E=1e-81 gb:AAC28085.1; (AF100457) response regulator [Myxococcus xanthus]; E=5e-80 COG: atoC; COG2204 AAA superfamily ATPases with N-terminal receiver; E=1e-82 PFAM: PF00072; Response regulator receiver doma; E=2.7e-32 PF00158; Sigma-54 interaction domain; E=1.1e-119 NP_869835.1 PMID: 2666400 PMID: 11243806 best DB hits: BLAST: gb:AAG59806.1; AF305914_1 (AF305914) HydH [Klebsiella oxytoca]; E=2e-23 gb:AAG09417.1; AF180147_9 (AF180147) bZIP histidine kinase TobS; E=5e-23 embl:CAB43735.1; (Y18245) bZIP histidine kinase [Pseudomonas; E=6e-23 COG: BH1920; COG0642 Sensory transduction histidine kinases; E=2e-22 PFAM: PF00072; Response regulator receiver doma; E=1.2e-21 PF00989; PAS domain; E=1e-08 PF00785; PAC motif; E=0.053 NP_869836.1 PMID: 2155230 best DB hits: BLAST: pir:A83631; conserved hypothetical protein PA0128 [imported] -; E=2e-34 swissprot:P16680; PHNA_ECOLI PHNA PROTEIN ----- pir: B35718; E=5e-29 pir:F82023; PhnA protein homolog NMA0283 [imported] - Neisseria; E=3e-27 COG: PA0128; COG2824 Uncharacterized Zn-ribbon-containing protein; E=2e-35 phnA; COG2824 Uncharacterized Zn-ribbon-containing protein involved; E=5e-30 NMB0037; COG2824 Uncharacterized Zn-ribbon-containing protein; E=2e-27 NP_869837.1 best DB hits: PFAM: PF01485; IBR domain; E=0.38 NP_869838.1 best DB hits: BLAST: gb:AAD21990.1; (AF110998) DNA-directed DNA polymerase [snow goose; E=0.70 gb:AAD21980.1; (AF110996) DNA-directed DNA polymerase [snow goose; E=0.75 gb:AAD21985.1; (AF110997) DNA-directed DNA polymerase [snow goose; E=0.75 NP_869839.1 PMID: 7699720 PMID: 9278513 best DB hits: BLAST: embl:CAB62661.1; (AL133422) hypothetical protein SCM1.03c.; E=8e-33 pir:D75276; response regulator - Deinococcus radiodurans (strain R1); E=1e-31 swissprot:Q55169; RCP1_SYNY3 RESPONSE REGULATOR RCP1 -----; E=1e-25 COG: DR2420; COG0784 CheY-like receiver domains; E=1e-32 slr0115; COG0745 Response regulators consisting of a CheY-like; E=2e-09 sll0039; COG0784 CheY-like receiver domains; E=6e-09 PFAM: PF00072; Response regulator receiver doma; E=6.5e-19 NP_869840.1 PMID: 10567266 best DB hits: BLAST: pir:C75276; sensory box sensor histidine kinase - Deinococcus; E=8e-45 swissprot:Q55168; PHY1_SYNY3 PHYTOCHROME-LIKE PROTEIN CPH1; E=1e-41 embl:CAB62662.1; (AL133422) two-component sensor; E=2e-41 COG: DR2419_2; COG0642 Sensory transduction histidine kinases; E=8e-46 PFAM: PF00512; His Kinase A (phosphoacceptor) doma; E=1e-12 PF02518; Histidine kinase-, DNA gyrase B-, p; E=3.5e-35 NP_869842.1 Enables the enzymatic reduction of mercuric ions to elemental mercury NP_869843.1 PMID: 8590279 best DB hits: BLAST: swissprot:Q55909; Y305_SYNY3 HYPOTHETICAL 22.2 KD PROTEIN SLR0305; E=2e-40 gb:AAB72174.1; (AF000657) unknown protein [Arabidopsis thaliana]; E=3e-33 gb:AAC72122.1; (AC005278) F15K9.14 [Arabidopsis thaliana]; E=1e-27 COG: slr0305; COG0398 Uncharacterized ACR; E=2e-41 aq_2066; COG1238 Uncharacterized membrane protein; E=7e-04 BS_yhjE; COG0398 Uncharacterized ACR; E=8e-04 NP_869847.1 PMID: 9175471 PMID: 9727486 best DB hits: BLAST: gb:AAK04154.1; AE006244_3 (AE006244) HYPOTHETICAL PROTEIN; E=2e-12 pir:B82297; probable acetyltransferase VC0655 [imported] - Vibrio; E=7e-12 pir:H83557; hypothetical protein PA0711 [imported] - Pseudomonas; E=2e-11 COG: VC0655; COG3153 Predicted acetyltransferase; E=7e-13 PFAM: PF00583; Acetyltransferase (GNAT) family; E=1.1e-16 NP_869848.1 PMID: 2106913 PMID: 3932661 PMID: 2506358 PMID: 2600971 best DB hits: BLAST: embl:CAC04216.1; (AL391515) ferredoxin [Streptomyces coelicolor; E=3e-16 embl:CAC05765.1; (AL391751) ferredoxin [Streptomyces; E=6e-16 swissprot:P13279; FER_STRGR FERREDOXIN ----- pir: S08287; E=2e-15 COG: Rv1177; COG1146 Ferredoxin 3; E=7e-16 VC1512; COG0437 Fe-S-cluster-containing hydrogenase components 1; E=5e-05 Rv0886_1; COG1146 Ferredoxin 3; E=2e-04 PFAM: PF00037; 4Fe-4S binding domain; E=1.9e-07 NP_869849.1 PMID: 11315111 best DB hits: BLAST: gb:AAB89527.1; (AE000984) dinitrogenase reductase activating; E=8e-11 pir:JC4745; ADP-ribosyl-nitrogenase hydrolase (EC 3.2.2.24) - rice; E=1e-06 pir:I39752; ADP-ribosyl-nitrogenase hydrolase (EC 3.2.2.24) -; E=1e-06 COG: AF1724; COG1397 ADP-ribosylglycohydrolase; E=7e-12 NP_869850.1 PMID: 9915792 best DB hits: BLAST: swissprot:Q9ZBX9; KPTA_STRCO PROBABLE RNA 2'-PHOSPHOTRANSFERASE; E=3e-42 swissprot:Q9I778; KPTA_PSEAE PROBABLE RNA 2'-PHOSPHOTRANSFERASE; E=5e-42 pir:S56556; hypothetical 24.6K protein (iadA-mcrD intergenic region); E=1e-41 COG: PA0054; COG1859 Uncharacterized ACR; E=4e-43 PFAM: PF01885; Domain of unknown function DUF60; E=9.2e-62 NP_869853.1 PMID: 8451191 PMID: 8506147 best DB hits: BLAST: pir:E70585; probable transcriptional regulator Rv2358 - Mycobacterium; E=4e-07 pir:B70850; probable transcriptional regulator Rv0081 - Mycobacterium; E=5e-07 gb:AAG02351.1; AF210249_10 (AF210249) metal-dependent regulatory; E=1e-06 COG: Rv2358; COG0640 Predicted transcriptional regulators; E=4e-08 PFAM: PF01022; Bacterial regulatory protein, arsR f; E=1.3e-13 NP_869854.1 PMID: 9733650 PMID: 8702871 best DB hits: BLAST: swissprot:P73801; YC61_SYNY3 HYPOTHETICAL 19.1 KD PROTEIN SLR1261; E=5e-25 embl:CAB62750.1; (AL133424) hypothetical protein SCF56.05; E=6e-17 swissprot:P55734; YGAP_ECOLI HYPOTHETICAL 18.6 KD PROTEIN IN; E=2e-14 COG: slr1261; COG0607 Rhodanese-related sulfurtransferases; E=5e-26 PFAM: PF00581; Rhodanese-like domain; E=2.1e-15 NP_869855.1 best DB hits: BLAST: pir:H83213; hypothetical protein PA3457 [imported] - Pseudomonas; E=1e-08 pir:S74895; hypothetical protein slr1262 - Synechocystis sp. (strain; E=4e-08 pir:H70015; hypothetical protein yunE - Bacillus subtilis -----; E=2e-04 COG: PA3457; COG0730 Predicted permeases; E=1e-09 PFAM: PF01925; Domain of unknown function DUF81; E=3.5e-12 NP_869856.1 PMID: 7588620 best DB hits: BLAST: ddbj:BAA86645.1; (AB033763) hypothetical protein [Staphylococcus; E=9e-94 pir:E75584; conserved hypothetical protein - Deinococcus radiodurans; E=3e-90 pir:T44111; conserved hypothetical protein [imported] -; E=2e-76 COG: DRA0304_1; COG0491 Zn-dependent hydrolases, including glyoxylases; E=3e-63 DRA0304_2; COG0607 Rhodanese-related sulfurtransferases; E=2e-22 BS_yrkH; COG0491 Zn-dependent hydrolases, including glyoxylases; E=2e-17 PFAM: PF00753; Metallo-beta-lactamase superfamil; E=7.1e-27 PF00581; Rhodanese-like domain; E=0.02 NP_869858.1 PMID: 2276500 PMID: 1904771 PMID: 8695634 PMID: 8526846 PMID: 7664064 PMID: 7559480 best DB hits: BLAST: swissprot:Q59738; BFR_RHOCA BACTERIOFERRITIN (BFR) ----- embl:; E=9e-22 swissprot:P49944; BFR_BRUME BACTERIOFERRITIN (BFR) ----- pir:; E=4e-21 pir:H82810; bacterioferritin XF0395 [imported] - Xylella fastidiosa; E=7e-19 COG: XF0395; COG2193 Bacterioferritin (cytochrome b1); E=7e-20 BS_yhjR; COG1633 Uncharacterized ACR; E=0.004 AF0832; COG1592 Rubrerythrin; E=0.009 PFAM: PF01334; Bacterioferritin; E=9.1e-39 NP_869859.1 best DB hits: BLAST: gb:AAB90342.1; (AE001041) A. fulgidus predicted coding region; E=0.001 COG: AF0913; COG1416 Uncharacterized ACR; E=1e-04 PFAM: PF01406; tRNA synthetases class I (C); E=0.52 NP_869863.1 PMID: 2249654 PMID: 2184029 best DB hits: BLAST: gb:AAG09628.1; (AY007258) CztB [Pseudomonas fluorescens]; E=6e-17 pir:F83330; RND divalent metal cation efflux membrane fusion protein; E=2e-15 embl:CAB56470.1; (Y14018) czrB protein [Pseudomonas aeruginosa]; E=2e-14 COG: PA2521; COG0845 Membrane-fusion protein; E=1e-16 PFAM: PF00364; Biotin-requiring enzyme; E=4.2e-05 PF00529; HlyD family secretion protein; E=0.37 NP_869864.1 PMID: 8829543 best DB hits: BLAST: swissprot:P94177; CZCA_ALCSP CATION EFFLUX SYSTEM PROTEIN CZCA; E=0.0 pir:A33830; cation efflux system membrane protein czcA - Alcaligenes; E=0.0 swissprot:P13511; CZCA_ALCEU COBALT-ZINC-CADMIUM RESISTANCE PROTEIN; E=0.0 COG: PA2520; COG0841 Cation/multidrug efflux pump; E=0.0 PFAM: PF00804; Syntaxin; E=0.39 PF00873; AcrB/AcrD/AcrF family; E=0 NP_869865.1 PMID: 3052291 PMID: 8052622 best DB hits: BLAST: embl:CAC01348.1; (AL390975) ECF-subfamily sigma factor; E=9e-08 gb:AAC45221.1; (U87307) extracytoplasmic function alternative; E=1e-04 embl:CAC17654.1; (AL450450) ECF sigma factor; E=1e-04 COG: Rv1221; COG1595 DNA-directed RNA polymerase specialized sigma; E=6e-05 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=3.3e-10 NP_869866.1 PMID: 1956325 PMID: 1835513 PMID: 3291115 best DB hits: BLAST: ddbj:BAB06223.1; (AP001515) serinethreonine protein kinase; E=1e-44 pir:T36501; probable serinethreonine protein kinase - Streptomyces; E=7e-43 pir:T36717; probable serinethreonine protein kinase - Streptomyces; E=3e-42 COG: BH2504_1; COG0515 Serine/threonine protein kinases; E=1e-45 PFAM: PF00069; Protein kinase domain; E=2.2e-50 NP_869868.1 PMID: 2229036 PMID: 3762694 PMID: 1542576 best DB hits: BLAST: pir:B83548; hypothetical protein PA0787 [imported] - Pseudomonas; E=2e-96 gb:AAG45955.1; AF282921_1 (AF282921) RecF protein; E=7e-35 gb:AAB90237.1; (AE001034) A. fulgidus predicted coding region; E=0.005 PFAM: PF00005; ABC transporter; E=0.0014 PF00470; RecF protein; E=0.34 PF02463; SMC domain N terminal domain; E=0.11 NP_869869.1 best DB hits: BLAST: pir:T37506; protein-S-isoprenylcysteine O-methyltransferase (EC; E=0.095 NP_869870.1 best DB hits: BLAST: swissprot:P29679; TESA_ECOLI ACYL-COA THIOESTERASE I PRECURSOR; E=0.28 gb:AAB40248.1; (U82664) acyl-coA thioesterase I precursor; E=0.28 gb:AAG54851.1; AE005230_11 (AE005230) acyl-CoA thioesterase I; E=0.32 NP_869871.1 PMID: 20411542 best DB hits: BLAST: pir:T06288; probable cytochrome P450 T9E8.50 - Arabidopsis thaliana; E=5e-14 ddbj:BAA31438.1; (AB010393) ALK6 [Yarrowia lipolytica]; E=3e-13 pir:C81286; probable cytochrome P450 Cj1411c [imported] -; E=5e-13 COG: Cj1411c; COG2124 Cytochrome P450; E=4e-14 PFAM: PF00067; Cytochrome P450; E=1e-20 NP_869872.1 PMID: 8576035 PMID: 3031032 best DB hits: BLAST: prf:2206391A; phosphatidylglycerophosphate synthase [Rhodobacter; E=2e-04 gb:AAG44472.1; AF241784_1 (AF241784) CAPTase-iso [Homo sapiens]; E=7e-04 swissprot:Q50611; PGSA_MYCTU ; E=0.004 COG: Rv1822; COG0558 Phosphatidylglycerophosphate synthase; E=4e-04 PFAM: PF01066; CDP-alcohol phosphatidyltrans; E=0.00012 NP_869873.1 PMID: 2995359 PMID: 8557688 best DB hits: BLAST: gb:AAG56370.1; AE005365_4 (AE005365) phosphatidate; E=4e-24 swissprot:P76091; YNBB_ECOLI HYPOTHETICAL 33.1 KD PROTEIN IN; E=3e-22 pir:H82138; probable phosphatidate cytidylyltransferase VC1936; E=5e-22 COG: ynbB; COG0575 CDP-diglyceride synthetase; E=3e-23 PFAM: PF01148; Phosphatidate cytidylyltransfe; E=4.9e-16 NP_869874.1 best DB hits: BLAST: pir:C82165; conserved hypothetical protein VC1723 [imported] -; E=6e-12 swissprot:P71772; YE91_MYCTU HYPOTHETICAL 26.6 KDA PROTEIN RV1491C; E=8e-07 pir:B71448; hypothetical protein - Arabidopsis thaliana -----; E=1e-04 COG: VC1723; COG0398 Uncharacterized ACR; E=5e-13 NP_869875.1 PMID: 2180916 best DB hits: BLAST: pir:E81429; dksA-like protein Cj0125c [imported] - Campylobacter; E=1e-09 pir:D71366; probable dnaK suppressor - syphilis spirochete -----; E=2e-06 pir:T35472; hypothetical protein SC6C5.01 SC6C5.01 - Streptomyces; E=8e-06 COG: Cj0125c; COG1734 DnaK suppressor protein; E=2e-10 PFAM: PF01258; Prokaryotic dksA/traR C4-type zi; E=3.2e-10 NP_869876.1 best DB hits: BLAST: pir:D83268; conserved hypothetical protein PA3023 [imported] -; E=6e-20 swissprot:P76407; YEGS_ECOLI HYPOTHETICAL 32.0 KDA PROTEIN IN; E=9e-14 gb:AAG57146.1; AE005435_4 (AE005435) orf, hypothetical protein; E=3e-13 COG: PA3023; COG1597 Uncharacterized ACR; E=6e-21 PFAM: PF00781; Diacylglycerol kinase catalyti; E=0.0004 NP_869877.1 best DB hits: BLAST: pir:C69097; 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17); E=8e-16 pir:A70360; 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17); E=7e-13 pir:F69104; 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17); E=2e-11 COG: MTH1722; COG1409 Predicted phosphohydrolases; E=8e-17 APE0113; COG0420 DNA repair exonuclease; E=0.001 HI0399; COG1409 Predicted phosphohydrolases; E=0.001 PFAM: PF02549; DNA repair exonuclease; E=4.2e-06 NP_869879.1 PMID: 10984043 best DB hits: BLAST: pir:A83334; hypothetical protein PA2481 [imported] - Pseudomonas; E=4e-27 pir:E83075; probable cytochrome c PA4571 [imported] - Pseudomonas; E=8e-27 pir:D81360; cytochrome C Cj0874c [imported] - Campylobacter jejuni; E=8e-23 COG: PA2481; COG3258 Cytochrome c; E=4e-28 NP_869881.1 PMID: 8486276 best DB hits: BLAST: gb:AAD03845.1; (AF079317) unknown [Sphingomonas aromaticivorans]; E=2e-33 pir:T50593; probable membrane transport protein [imported] -; E=4e-24 pir:H83198; probable MFS transporter PA3573 [imported] - Pseudomonas; E=1e-20 COG: PA3573; COG0477 Permeases of the major facilitator superfamily; E=1e-21 PFAM: PF00083; Sugar (and other) transporter; E=1.9e-13 NP_869883.1 best DB hits: BLAST: gb:AAK03766.1; (AE006204) unknown [Pasteurella multocida]; E=0.63 NP_869888.1 PMID: 11097914 best DB hits: BLAST: pir:G69987; hypothetical protein ytaB - Bacillus subtilis -----; E=3e-08 gb:AAF01195.1; AF179401_4 (AF179401) TspO [Sinorhizobium meliloti]; E=2e-07 pir:A57438; tryptophan-rich sensory protein [similarity] -; E=4e-04 PFAM: PF01061; ABC-2 type transporter; E=0.09 NP_869890.1 PMID: 11466286 best DB hits: BLAST: pir:F75526; hypothetical protein - Deinococcus radiodurans (strain; E=0.012 NP_869892.1 best DB hits: BLAST: embl:CAB92104.1; (AL356334) hypothetical protein SCD69.03; E=0.001 pir:D70567; hypothetical protein Rv3471c - Mycobacterium; E=0.006 pir:A64502; hypothetical protein MJ1618 - Methanococcus jannaschii; E=0.052 COG: Rv3471c; COG0662 Mannose-6-phosphate isomerase; E=6e-04 NP_869895.1 PMID: 9282737 PMID: 1971619 best DB hits: BLAST: pir:C75333; general secretion pathway protein E - Deinococcus; E=2e-04 pir:A72329; general secretion pathway protein E - Thermotoga; E=0.002 swissprot:P31599; NFRB_ECOLI BACTERIOPHAGE N4 ADSORPTION PROTEIN B; E=0.014 COG: DR1964; COG2804 Predicted ATPases involved in pili biogenesis, PilB; E=2e-05 NP_869901.1 best DB hits: BLAST: gb:AAG18661.1; (AE004971) Vng0021h [Halobacterium sp. NRC-1]; E=4e-23 gb:AAG18694.1; (AE004974) Vng0056h [Halobacterium sp. NRC-1]; E=4e-21 pir:T44318; transposase homolog [imported] - Vibrio cholerae -----; E=3e-16 NP_869902.1 best DB hits: PFAM: PF02424; ApbE family; E=0.71 NP_869909.1 PMID: 8076591 best DB hits: BLAST: embl:CAB54047.1; (AJ245436) hypothetical protein, 21.8 kD; E=4e-27 swissprot:P50361; Y4HQ_RHISN HYPOTHETICAL 21.7 KD PROTEIN Y4HQ; E=5e-25 pir:S19103; hypothetical protein 3 - Agrobacterium rhizogenes; E=1e-19 COG: BS_lexA; COG1974 SOS-response transcriptional repressors; E=5e-06 PFAM: PF00325; Bacterial regulatory proteins,; E=4.2e-05 PF01325; Iron dependent repressor, N-te; E=0.00013 PF01047; MarR family; E=0.00032 NP_869913.1 best DB hits: BLAST: gb:AAC53043.1; (U86137) telomerase-1 [Mus musculus]; E=2e-08 gb:AAB51690.1; (U89282) telomerase component 1 [Rattus; E=3e-06 gb:AAC51107.1; (U86136) telomerase-associated protein TP-1 [Homo; E=6e-06 NP_869915.1 PMID: 10517581 best DB hits: BLAST: ddbj:BAA83790.1; (AB025225) AfsR-g [Streptomyces griseus]; E=2e-05 embl:CAB72409.1; (AL138978) AfsR-like regulator; E=9e-04 swissprot:P25941; AFSR_STRCO REGULATORY PROTEIN AFSR -----; E=0.003 PFAM: PF00293; MutT-like domain; E=2.9e-06 PF00515; TPR Domain; E=0.28 NP_869918.1 PMID: 10588699 PMID: 9556617 best DB hits: BLAST: swissprot:P05827; ILVY_ECOLI TRANSCRIPTIONAL ACTIVATOR PROTEIN; E=1e-05 pir:S30671; ilvC activator - Escherichia coli; E=1e-05 gb:AAG58968.1; AE005608_9 (AE005608) positive regulator for ilvC; E=1e-05 COG: ilvY; COG0583 Transcriptional regulator; E=9e-07 PFAM: PF00126; Bacterial regulatory helix-turn-heli; E=6.1e-15 NP_869920.1 PMID: 2046548 PMID: 8412700 best DB hits: BLAST: pir:T35377; probable membrane protein - Streptomyces coelicolor; E=4e-08 pir:S76244; hypothetical protein - Synechocystis sp. (strain PCC; E=6e-06 pir:S76018; hypothetical protein - Synechocystis sp. (strain PCC; E=3e-04 COG: sll0261; COG1226 Kef-type K+ transport systems, predicted; E=6e-07 DR2336; COG1226 Kef-type K+ transport systems, predicted NAD-binding; E=4e-04 MJ0138.1; COG1226 Kef-type K+ transport systems, predicted; E=7e-04 PFAM: PF01408; Oxidoreductase, NAD-bind; E=0.0037 PF02254; KTN NAD-binding domain; E=3.8e-13 NP_869921.1 PMID: 3291115 best DB hits: BLAST: gb:AAF73695.1; (AE002226) serinethreonine-protein kinase; E=1e-35 pir:G71532; probable threoninetyrosine-specific protein kinase (EC; E=8e-34 pir:C72120; st protein kinase - Chlamydophila pneumoniae (strain; E=5e-33 COG: CT301_1; COG0515 Serine/threonine protein kinases; E=8e-35 PFAM: PF00069; Protein kinase domain; E=2.6e-37 PF00400; WD domain, G-beta repeat; E=0.013 PF00515; TPR Domain; E=0.0067 NP_869923.1 PMID: 8041625 best DB hits: BLAST: pir:S35005; probable transposase - Acetobacter xylinus insertion; E=9e-21 pir:S35004; probable transposase - Acetobacter xylinus insertion; E=4e-20 gb:AAD47597.1; AF144038_1 (AF144038) transposase; E=2e-18 COG: sll1716; COG3293 Predicted transposase; E=2e-13 PFAM: PF01511; Transposase; E=1.2e-09 PF01675; Transposase; E=2.5e-05 NP_869931.1 best DB hits: BLAST: pir:A81289; hypothetical protein Cj1433c [imported] - Campylobacter; E=6e-07 pir:E71020; hypothetical protein PH1458 - Pyrococcus horikoshii; E=0.017 gb:AAD45550.1; U70376_15 (U70376) SpcY [Streptomyces netropsis]; E=0.061 COG: PH1458; COG1964 Predicted Fe-S oxidoreductases; E=0.002 NP_869933.1 PMID: 7515051 best DB hits: BLAST: gb:AAA39802.1; (L30104) N-acetylgalactosaminyltransferase [Mus; E=2e-06 PFAM: PF00535; Glycosyl transferase; E=1.6e-06 NP_869936.1 PMID: 3119860 best DB hits: BLAST: pir:F70829; probable transcriptional regulator Rv0474 - Mycobacterium; E=0.015 embl:CAC04034.1; (AL391406) DNA-binding protein; E=0.10 pir:S25724; hypothetical protein 1 (phbC 5' region) - Rhodococcus; E=0.12 COG: Rv0474; COG1396 Predicted transcriptional regulators; E=0.001 PFAM: PF01381; Helix-turn-helix; E=2.9e-13 NP_869937.1 best DB hits: PFAM: PF00515; TPR Domain; E=0.017 NP_869938.1 best DB hits: BLAST: embl:CAC04034.1; (AL391406) DNA-binding protein; E=0.048 pir:S25724; hypothetical protein 1 (phbC 5' region) - Rhodococcus; E=0.048 ddbj:BAB07268.1; (AP001519) immunity repressor protein; E=0.057 COG: BH3549; COG1396 Predicted transcriptional regulators; E=0.006 PFAM: PF01381; Helix-turn-helix; E=3.5e-10 NP_869939.1 PMID: 8921897 best DB hits: BLAST: gb:AAK03625.1; (AE006191) HsdR [Pasteurella multocida]; E=9e-56 pir:C81302; probable type I site-specific deoxyribonuclease (EC; E=1e-54 pir:JC5216; type I site-specific deoxyribonuclease (EC 3.1.21.3) Hsd; E=1e-52 COG: Cj1549c; COG0610 Restriction enzymes type I helicase subunits and; E=1e-55 PFAM: PF01911; Ribosomal LX protein; E=0.84 NP_869941.1 best DB hits: BLAST: gb:AAB91575.2; (AF242881) yma [Agrobacterium tumefaciens]; E=2e-32 NP_869942.1 PMID: 2585490 PMID: 9837717 best DB hits: BLAST: gb:AAC37110.1; (L77118) M. jannaschii predicted coding region; E=3e-12 swissprot:Q58615; YC18_METJA HYPOTHETICAL PROTEIN MJ1218 -----; E=3e-12 embl:CAA35604.1; (X17591) HsdS polypeptide, part of CfrA family; E=1e-06 COG: MJECL41; COG0732 Restriction endonuclease S subunits; E=3e-13 PFAM: PF01420; Type I restriction modification; E=0.00019 NP_869943.1 PMID: 8921897 best DB hits: BLAST: pir:D82522; type I restriction-modification system DNA methylase; E=4e-58 gb:AAC37111.1; (L77118) type I restriction enyzme ECOR1243 I M; E=4e-56 embl:CAA68057.1; (X99719) Sty SBLI [Salmonella enterica]; E=1e-54 COG: XF2742; COG0286 Type I restriction-modification system; E=4e-59 PFAM: PF02506; Type I restriction modification s; E=1e-34 PF02384; N-6 DNA Methylase; E=4.3e-10 NP_869945.1 best DB hits: PFAM: PF00140; Sigma-70 factor; E=0.0029 NP_869947.1 PMID: 10567266 best DB hits: BLAST: pir:D75324; hypothetical protein - Deinococcus radiodurans (strain; E=6e-15 pir:C83546; hypothetical protein PA0806 [imported] - Pseudomonas; E=2e-11 embl:CAB92195.1; (AL356592) membrane protein.; E=0.005 NP_869954.1 PMID: 9384377 best DB hits: BLAST: pir:G69987; hypothetical protein ytaB - Bacillus subtilis -----; E=2e-08 gb:AAF01195.1; AF179401_4 (AF179401) TspO [Sinorhizobium meliloti]; E=8e-08 pir:A57438; tryptophan-rich sensory protein [similarity] -; E=9e-05 PFAM: PF01061; ABC-2 type transporter; E=0.13 NP_869956.1 PMID: 9371463 best DB hits: BLAST: pir:B69020; hypothetical protein MTH115 - Methanobacterium; E=2e-17 gb:AAD32774.1; AC007661_11 (AC007661) unknown protein [Arabidopsis; E=4e-09 ddbj:BAA96146.1; (AP002092) ESTs; E=3e-07 NP_869957.1 PMID: 8905231 best DB hits: BLAST: pir:S75732; hypothetical protein slr0919 - Synechocystis sp. (strain; E=1e-14 ddbj:BAB10296.1; (AB026650) gene_id:MPF21.11~pir S75732~similar; E=3e-13 pir:H82154; conserved hypothetical protein VC1812 [imported] -; E=6e-07 COG: slr0919; COG3011 Uncharacterized BCR; E=1e-15 NP_869958.1 PMID: 97000351 best DB hits: BLAST: embl:CAB65593.1; (AL136058) helicase [Streptomyces; E=0.0 pir:H82276; helicase-related protein VC0812 [imported] - Vibrio; E=1e-64 gb:AAB64767.1; (U32517) Ydr332wp [Saccharomyces cerevisiae]; E=4e-21 COG: VC0812_2; COG1061 DNA or RNA helicases of superfamily II; E=1e-57 hsdR; COG0610 Restriction enzymes type I helicase subunits and; E=9e-06 PH0210; COG1061 DNA or RNA helicases of superfamily II; E=7e-05 PFAM: PF00270; DEAD/DEAH box helicase; E=0.00054 PF00271; Helicase conserved C-terminal doma; E=7.7e-14 NP_869959.1 best DB hits: PFAM: PF01549; Domain of unknown function DUF18; E=0.1 NP_869960.1 best DB hits: BLAST: embl:CAA07132.1; (AJ006589) gp7 [Bacteriophage phi-C31]; E=0.66 NP_869961.1 PMID: 8412658 best DB hits: BLAST: swissprot:Q07736; T1RA_ECOLI TYPE I RESTRICTION ENZYME ECOAI R; E=3e-33 gb:AAG59531.1; AE005666_3 (AE005666) restriction; E=3e-33 swissprot:P08956; T1RK_ECOLI TYPE I RESTRICTION ENZYME ECOKI R; E=4e-29 COG: hsdR; COG0610 Restriction enzymes type I helicase subunits and; E=4e-30 YDR332w; COG1061 DNA or RNA helicases of superfamily II; E=2e-09 MJECL40; COG0610 Restriction enzymes type I helicase subunits and; E=0.001 PFAM: PF00270; DEAD/DEAH box helicase; E=0.14 PF00271; Helicase conserved C-terminal doma; E=0.6 NP_869963.1 PMID: 8412658 best DB hits: BLAST: swissprot:Q47282; T1ME_ECOLI TYPE I RESTRICTION ENZYME ECOEI M; E=4e-13 gb:AAG59530.1; AE005666_2 (AE005666) restriction; E=1e-12 pir:A47200; EcoA system protein M - Escherichia coli ----- gb:; E=2e-12 COG: Rv2756c; COG0286 Type I restriction-modification system; E=4e-10 PFAM: PF02506; Type I restriction modification s; E=3.3e-06 NP_869964.1 PMID: 6304321 best DB hits: BLAST: embl:CAA10700.1; (AJ132566) HsdS protein [Escherichia coli]; E=5e-13 swissprot:P06990; T1SB_ECOLI TYPE I RESTRICTION ENZYME ECOBI; E=2e-10 gb:AAG18734.1; (AE004978) type I restriction modification enzyme,; E=4e-09 COG: VNG0107G; COG0732 Restriction endonuclease S subunits; E=4e-10 PFAM: PF01420; Type I restriction modification D; E=3.3e-06 NP_869965.1 PMID: 4515613 PMID: 354508 PMID: 6221115 best DB hits: BLAST: gb:AAA96561.1; (J02459) ea59 (525) [bacteriophage lambda]; E=5e-05 pir:S49559; phage Hau3 resistance protein - Streptomyces lividans; E=2e-04 gb:AAK02366.1; (AE006063) unknown [Pasteurella multocida]; E=0.014 PFAM: PF02463; SMC domain N terminal domain; E=0.039 NP_869966.1 PMID: 12003951 best DB hits: BLAST: gb:AAK02367.1; (AE006063) unknown [Pasteurella multocida]; E=0.049 gb:AAA96560.1; (J02459) ea31 (296) [bacteriophage lambda]; E=0.19 NP_869967.1 PMID: 7929436 best DB hits: BLAST: swissprot:P51486; ARR1_CALVI PHOSRESTIN II (ARRESTIN A) (ARRESTIN; E=0.15 swissprot:P15372; ARRA_DROME PHOSRESTIN II (ARRESTIN A) (ARRESTIN; E=0.89 NP_869968.1 PMID: 20365717 best DB hits: BLAST: pir:E75309; conserved hypothetical protein - Deinococcus radiodurans; E=2e-34 pir:T35251; probable endonuclease - Streptomyces coelicolor -----; E=3e-04 pir:A82625; endonuclease V (deoxyinosine 3'endonuclease) XF1892; E=0.005 COG: DR2162; COG1515 Deoxyinosine 3'endonuclease (endonuclease V); E=2e-35 NP_869970.1 PMID: 10567266 PMID: 10766734 best DB hits: BLAST: swissprot:Q9RUW8; RO60_DEIRA 60-KDA SS-ARO RIBONUCLEOPROTEIN; E=2e-17 gb:AAC53142.1; (U66843) Mus musculus 60kDa SS-ARo; E=1e-11 pir:T36919; hypothetical protein SCI7.23c - Streptomyces coelicolor; E=1e-11 NP_869978.1 best DB hits: BLAST: swissprot:P06979; YECA_ECOLI HYPOTHETICAL 25.0 KD PROTEIN IN; E=5e-05 gb:AAG56897.1; AE005412_7 (AE005412) orf, hypothetical protein; E=5e-05 pir:G82437; SecA-related protein VCA0628 [imported] - Vibrio; E=1e-04 COG: yecA; COG3318 Predicted metal-binding protein related to the; E=4e-06 ychJ; COG3012 Uncharacterized BCR; E=4e-04 secA; COG0653 Preprotein translocase subunit SecA (ATPase, RNA; E=8e-04 PFAM: PF02810; SEC-C motif; E=2.2e-06 NP_869984.1 best DB hits: BLAST: pir:F75091; hypothetical protein PAB1624 - Pyrococcus abyssi (strain; E=1e-12 pir:F71051; hypothetical protein PH1109 - Pyrococcus horikoshii; E=7e-12 pir:H72254; conserved hypothetical protein - Thermotoga maritima; E=2e-11 COG: PAB1624; COG1832 Uncharacterized ACR; E=1e-13 AF0932; COG1042 Acyl-CoA synthetase (NDP forming); E=2e-11 yccU; COG1832 Uncharacterized ACR; E=3e-09 PFAM: PF02629; Uncharacterized ACR, COG1832; E=9.2e-17 NP_869985.1 best DB hits: PFAM: PF01011; PQQ enzyme repeat; E=0.39 NP_869988.1 best DB hits: BLAST: swissprot:O26373; Y273_METTH HYPOTHETICAL PROTEIN MTH273 -----; E=2e-10 swissprot:O67293; YC50_AQUAE HYPOTHETICAL PROTEIN AQ_1250 -----; E=3e-08 swissprot:O58984; YC69_PYRHO HYPOTHETICAL PROTEIN PH1269 -----; E=7e-06 COG: MTH273; COG1881 Phospholipid-binding protein; E=2e-11 NP_869989.1 best DB hits: BLAST: pir:T05344; hypothetical protein F8B4.40 - Arabidopsis thaliana; E=0.79 NP_869990.1 best DB hits: PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=2.9e-07 NP_869992.1 PMID: 7610040 best DB hits: BLAST: swissprot:P39368; YJHQ_ECOLI HYPOTHETICAL 20.0 KDA PROTEIN IN; E=6e-21 pir:B82297; probable acetyltransferase VC0655 [imported] - Vibrio; E=7e-13 gb:AAK04154.1; AE006244_3 (AE006244) HYPOTHETICAL PROTEIN; E=6e-10 COG: yjhQ; COG3153 Predicted acetyltransferase; E=6e-22 PFAM: PF00583; Acetyltransferase (GNAT) family; E=2.2e-10 NP_869994.1 PMID: 8521301 best DB hits: BLAST: pir:C82396; transcriptional regulator MarR family VCA0955 [imported] -; E=2e-04 gb:AAD05186.1; (AF110185) unknown [Burkholderia pseudomallei]; E=4e-04 pir:F82675; transcriptional regulator MarREmrR family XF1490; E=7e-04 COG: VCA0955; COG1846 Transcriptional regulators; E=2e-05 PFAM: PF01047; MarR family; E=7.4e-09 NP_869995.1 PMID: 92267380 PMID: 96067120 best DB hits: BLAST: pir:JC1118; alkyl sulfatase (EC 3.1.6.-) - Pseudomonas sp -----; E=1e-60 pir:G83552; probable beta-lactamase PA0740 [imported] - Pseudomonas; E=2e-47 embl:CAA99186.1; (Z74906) ORF YOL164w [Saccharomyces cerevisiae]; E=2e-42 COG: PA0740; COG2015 Alkyl sulfatase and related hydrolases; E=2e-48 aq_1798; COG0491 Zn-dependent hydrolases, including glyoxylases; E=4e-10 PFAM: PF00753; Metallo-beta-lactamase superfamil; E=2.1e-27 PF02151; UvrB/uvrC motif; E=0.2 PF01656; Cobyrinic acid a,c-diamide syntha; E=0.44 NP_869998.1 PMID: 10984043 best DB hits: BLAST: pir:H83235; hypothetical protein PA3281 [imported] - Pseudomonas; E=0.002 gb:AAK02297.1; (AE006055) unknown [Pasteurella multocida]; E=0.005 pir:E83286; conserved hypothetical protein PA2864 [imported] -; E=0.062 COG: PA2864; COG2259 Predicted membrane protein; E=0.006 NP_869999.1 member of a large family of NAD or NADP-dependent oxidoreductases; paralogs occur in many bacteria NP_870000.1 PMID: 8698519 PMID: 97000351 best DB hits: BLAST: embl:CAB59476.1; (AL132648) hypothetical protein SCI41.06; E=1e-31 swissprot:Q56743; VIUB_VIBVU VULNIBACTIN UTILIZATION PROTEIN VIUB; E=5e-31 swissprot:Q56646; VIUB_VIBCH VIBRIOBACTIN UTILIZATION PROTEIN VIUB; E=9e-30 COG: VC2210; COG2375 Siderophore-interacting protein; E=9e-31 NP_870001.1 PMID: 11248100 best DB hits: BLAST: gb:AAK04020.1; (AE006230) unknown [Pasteurella multocida]; E=0.010 NP_870004.1 PMID: 10086841 PMID: 10086842 PMID: 10192928 best DB hits: BLAST: ddbj:BAB04024.1; (AP001508) BH0305~unknown conserved protein in; E=4e-31 gb:AAG59409.1; AE005653_10 (AE005653) oxidoreductase; E=2e-23 swissprot:P39315; YTFG_ECOLI HYPOTHETICAL 29.7 KD PROTEIN IN; E=4e-23 COG: BH0305; COG0702 Predicted nucleoside-diphosphate-sugar epimerases; E=3e-32 PFAM: PF01073; 3-beta hydroxysteroid dehydrogenase; E=0.023 NP_870006.1 PMID: 8905231 best DB hits: BLAST: pir:S74850; hypothetical protein slr0865 - Synechocystis sp. (strain; E=4e-24 pir:F70793; hypothetical protein Rv3701c - Mycobacterium; E=5e-23 embl:CAC02633.1; (AL390114) possible hypothetical 35.4 Kd protein; E=3e-22 NP_870007.1 PMID: 97000351 best DB hits: BLAST: embl:CAB62702.1; (AL133422) hypothetical protein SCM1.44.; E=4e-37 pir:H70793; hypothetical protein Rv3703c - Mycobacterium; E=3e-24 pir:S74705; hypothetical protein slr1303 - Synechocystis sp. (strain; E=3e-21 COG: Rv3703c; COG1262 Uncharacterized BCR; E=3e-25 NP_870008.1 PMID: 92267380 best DB hits: BLAST: pir:JC1118; alkyl sulfatase (EC 3.1.6.-) - Pseudomonas sp -----; E=3e-54 gb:AAG59281.1; AE005641_6 (AE005641) orf, hypothetical protein; E=4e-41 gb:AAC43177.1; (U00006) matches PS00743: Beta-lactamases class B; E=8e-41 COG: yjcS; COG2015 Alkyl sulfatase and related hydrolases; E=8e-42 aq_974; COG0491 Zn-dependent hydrolases, including glyoxylases; E=0.002 PFAM: PF00753; Metallo-beta-lactamase superf; E=1.2e-29 NP_870010.1 PMID: 8905231 best DB hits: BLAST: pir:S76701; hypothetical protein - Synechocystis sp. (strain PCC; E=1e-11 pir:T04873; hypothetical protein F28A21.220 - Arabidopsis thaliana; E=5e-10 gb:AAD34060.1; AF151823_1 (AF151823) CGI-65 protein [Homo sapiens]; E=1e-07 COG: sll0096; COG0702 Predicted nucleoside-diphosphate-sugar epimerases; E=1e-12 NP_870011.1 PMID: 1732207 PMID: 8547259 best DB hits: BLAST: swissprot:P45418; YKDK_ERWCH HYPOTHETICAL 8.1 KD PROTEIN IN KDGK; E=3e-06 pir:H81078; 4-oxalocrotonate tautomerase, probable NMB1474; E=8e-06 gb:AAG42543.1; (AY013584) isomerase [Sinorhizobium; E=2e-04 COG: NMB1474; COG1942 Uncharacterized protein, 4-oxalocrotonate; E=8e-07 PFAM: PF01361; Tautomerase enzyme; E=1.2e-06 NP_870013.1 PMID: 1435734 best DB hits: BLAST: ddbj:BAB05504.1; (AP001513) chaperonin involved in protein; E=5e-21 swissprot:P37584; CSAA_BACSU CSAA PROTEIN ----- pir: E69607; E=1e-20 pir:A83243; CsaA protein PA3221 [imported] - Pseudomonas aeruginosa; E=1e-20 COG: BH1785; COG0073 EMAP domain; E=5e-22 PFAM: PF01588; tRNA binding domain; E=2.3e-13 NP_870014.1 PMID: 8586283 best DB hits: BLAST: ddbj:BAB04002.1; (AP001508) BH0283~unknown conserved protein; E=5e-62 pir:E83199; conserved hypothetical protein PA3578 [imported] -; E=1e-57 pir:A83301; hypothetical protein PA2770 [imported] - Pseudomonas; E=3e-56 COG: BH0283; COG0384 Predicted epimerase, PhzC/PhzF homolog; E=5e-63 PFAM: PF02567; Phenazine biosynthesis-like protein; E=7.7e-27 NP_870015.1 PMID: 10952301 best DB hits: BLAST: pir:H82471; hypothetical protein VCA0329 VCA0298 VCA0343; E=1e-09 NP_870016.1 PMID: 9868367 best DB hits: BLAST: ddbj:BAB06554.1; (AP001516) BH2835~unknown conserved protein; E=7e-30 gb:AAK04163.1; AE006245_2 (AE006245) conserved hypothetical; E=5e-26 swissprot:P54168; YPGQ_BACSU HYPOTHETICAL 23.1 KD PROTEIN IN; E=8e-26 COG: BH2835; COG1418 Predicted HD superfamily hydrolase; E=7e-31 PFAM: PF01966; HD domain; E=2e-14 NP_870017.1 PMID: 10217496 best DB hits: BLAST: embl:CAB40581.1; (AJ010128) DNA alkylation repair enzyme; E=0.079 gb:AAK06230.1; AE006441_8 (AE006441) UNKNOWN PROTEIN [Lactococcus; E=0.13 NP_870021.1 PMID: 10688204 best DB hits: BLAST: pir:A81289; hypothetical protein Cj1433c [imported] - Campylobacter; E=2e-07 pir:E71020; hypothetical protein PH1458 - Pyrococcus horikoshii; E=5e-04 gb:AAD45550.1; U70376_15 (U70376) SpcY [Streptomyces netropsis]; E=0.077 COG: PH1458; COG1964 Predicted Fe-S oxidoreductases; E=5e-05 NP_870023.1 PMID: 7515051 best DB hits: BLAST: gb:AAA39802.1; (L30104) N-acetylgalactosaminyltransferase [Mus; E=2e-06 PFAM: PF00535; Glycosyl transferase; E=6.9e-07 NP_870024.1 PMID: 1601877 best DB hits: BLAST: gb:AAA35516.1; (M83651) beta-1,4; E=6e-07 ddbj:BAA04632.1; (D17809) beta-4N-acetylgalactosaminyltransferase; E=2e-06 gb:AAA39802.1; (L30104) N-acetylgalactosaminyltransferase [Mus; E=2e-06 COG: BS_yveT; COG0463 Glycosyltransferases involved in cell wall; E=0.003 PFAM: PF00535; Glycosyl transferase; E=5.2e-08 NP_870025.1 PMID: 9477341 best DB hits: BLAST: embl:CAC00604.2; (AL359776) hypothetical protein L5649.08; E=3e-07 pir:T20368; hypothetical protein D2045.9 - Caenorhabditis elegans; E=0.064 gb:AAD51367.1; AF177203_1 (AF177203) cerebral cell adhesion; E=0.26 NP_870033.1 PMID: 9654132 PMID: 8905231 best DB hits: BLAST: pir:S75047; drgA protein - Synechocystis sp. (strain PCC 6803); E=3e-60 swissprot:Q55233; DRGA_SYNY3 DRGA PROTEIN ----- gb: AAA91952.1; E=7e-56 pir:E82996; probable nitroreductase PA5190 [imported] - Pseudomonas; E=7e-41 COG: slr1719; COG0778 Nitroreductase; E=3e-61 PFAM: PF00881; Nitroreductase; E=1.3e-44 NP_870036.1 PMID: 8905231 best DB hits: BLAST: pir:S75116; squalene-hopene-cyclase - Synechocystis sp. (strain PCC; E=0.16 NP_870037.1 PMID: 1924314 best DB hits: BLAST: ddbj:BAB04773.1; (AP001510) transposase (08)ABC transporter; E=2e-53 ddbj:BAA83955.1; (AB024563) YFIL [Bacillus halodurans]; E=1e-52 ddbj:BAB05817.1; (AP001514) ABC transporter (ATP-binding protein); E=9e-52 COG: BH1054_2; COG0842 Permease component of an ABC-transporter; E=8e-54 BH2098; COG1131 ABC-type multidrug transport system, ATPase; E=8e-53 ybhF; COG1131 ABC-type multidrug transport system, ATPase component; E=5e-35 PFAM: PF00005; ABC transporter; E=2.1e-54 NP_870038.1 PMID: 9384377 best DB hits: BLAST: pir:H69803; ABC transporter (ATP-binding protein) homolog yfiM -; E=1e-05 ddbj:BAA83956.1; (AB024563) YFIM [Bacillus halodurans]; E=0.83 ddbj:BAB04774.1; (AP001510) BH1055~unknown conserved protein; E=0.83 COG: BS_yfiM; COG0842 Permease component of an ABC-transporter; E=1e-06 NP_870042.1 best DB hits: PFAM: PF00432; Prenyltransferase and squalene ox; E=0.0052 NP_870044.1 PMID: 2987847 PMID: 7584024 PMID: 2846289 best DB hits: BLAST: swissprot:P49994; DNAA_STAAU CHROMOSOMAL REPLICATION INITIATOR; E=1e-29 swissprot:P05648; DNAA_BACSU CHROMOSOMAL REPLICATION INITIATOR; E=4e-29 swissprot:P35887; DNAA_CAUCR CHROMOSOMAL REPLICATION INITIATOR; E=1e-28 COG: BS_dnaA; COG0593 ATPase involved in DNA replication initiation; E=4e-30 PFAM: PF00004; ATPase associated with variou; E=0.00043 PF00308; Bacterial dnaA protein; E=2e-48 NP_870045.1 PMID: 10908675 PMID: 7496536 PMID: 8482384 best DB hits: BLAST: pir:A71960; probable nitrogenase cofactor synthesis protein nifS -; E=1e-50 pir:D64547; iron-sulfur cofactor synthesis protein - Helicobacter; E=2e-50 swissprot:Q43884; NIFS_ANAAZ NIFS PROTEIN ----- gb: AAA87249.1; E=6e-49 COG: jhp0206; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; E=1e-51 PFAM: PF00266; Aminotransferase class-V; E=1.6e-60 NP_870047.1 PMID: 10086841 best DB hits: BLAST: ddbj:BAB05280.1; (AP001512) BH1561~unknown conserved protein; E=4e-19 pir:B83247; hypothetical protein PA3197 [imported] - Pseudomonas; E=3e-17 pir:S72956; hypothetical protein - Mycobacterium leprae -----; E=4e-16 COG: BH1561; COG1386 Predicted transcriptional regulator containing the; E=4e-20 NMB0739_2; COG1386 Predicted transcriptional regulator containing; E=1e-05 NP_870050.1 PMID: 7699720 best DB hits: BLAST: ddbj:BAB05983.1; (AP001514) two-component response regulator; E=2e-09 gb:AAF12879.1; AF022186_1 (AF022186) unknown [Cyanidium caldarium]; E=5e-09 gb:AAD47845.1; AF171076_1 (AF171076) probable CheY1 protein; E=6e-09 COG: BH2264; COG0745 Response regulators consisting of a CheY-like; E=2e-10 VCA1096; COG0784 CheY-like receiver domains; E=6e-10 HP1365; COG0745 Response regulators consisting of a CheY-like; E=1e-09 PFAM: PF00072; Response regulator receiver doma; E=6.6e-17 NP_870051.1 PMID: 1944223 best DB hits: BLAST: pir:C75333; general secretion pathway protein E - Deinococcus; E=6e-98 pir:E72032; general secretion pathway protein E CP1055 [imported] -; E=4e-89 pir:D71499; probable gen. secretion protein E - Chlamydia; E=1e-88 COG: DR1964; COG2804 Predicted ATPases involved in pili biogenesis, PilB; E=5e-99 PFAM: PF00437; Bacterial type II secretion system p; E=1.3e-138 NP_870052.1 PMID: 1640836 best DB hits: BLAST: pir:A75344; pilin biogenesis protein - Deinococcus radiodurans; E=4e-35 swissprot:P45793; TAPC_AERHY TYPE IV PILUS ASSEMBLY PROTEIN TAPC; E=2e-33 gb:AAC23568.1; (AF059249) type IV pilus assembly protein TapC; E=8e-33 COG: DR1863; COG1459 General secretory pathway protein F; E=3e-36 PFAM: PF00482; Bacterial type II secretion system p; E=2e-53 NP_870053.1 PMID: 10086841 best DB hits: BLAST: ddbj:BAB06546.1; (AP001516) exogenous DNA-binding protein; E=0.008 pir:T45730; peroxidase-like protein - Arabidopsis thaliana -----; E=0.46 NP_870057.1 PMID: 11406410 PMID: 1574005 best DB hits: BLAST: pir:E83529; sensorresponse regulator hybrid PA0928 [imported] -; E=6e-47 pir:B82427; sensor protein TorS VCA0709 [imported] - Vibrio cholerae; E=1e-45 gb:AAF04854.1; AF197912_1 (AF197912) histidine protein kinase; E=8e-44 COG: PA0928; COG0642 Sensory transduction histidine kinases; E=6e-48 PFAM: PF00672; HAMP domain; E=3.8e-12 PF00512; His Kinase A (phosphoacceptor); E=2.4e-25 PF02518; Histidine kinase-, DNA gyrase; E=6.4e-40 NP_870058.1 best DB hits: BLAST: pir:T37781; probable cytoskeleton assembly control protein - fission; E=0.023 embl:CAA84826.1; (Z35768) ORF YBL007c [Saccharomyces cerevisiae]; E=0.037 pir:T50995; related to cytoskeleton assembly control protein SLA1; E=0.17 NP_870060.1 best DB hits: PFAM: PF00589; Phage integrase; E=4.9e-07 NP_870063.1 PMID: 8412658 PMID: 9440532 best DB hits: BLAST: gb:AAG59530.1; AE005666_2 (AE005666) restriction; E=2e-32 swissprot:Q47282; T1ME_ECOLI TYPE I RESTRICTION ENZYME ECOEI M; E=2e-32 pir:A47200; EcoA system protein M - Escherichia coli ----- gb:; E=1e-31 COG: hsdM; COG0286 Type I restriction-modification system; E=3e-19 PFAM: PF02506; Type I restriction modification s; E=6.9e-10 PF02384; N-6 DNA Methylase; E=3.2e-16 NP_870064.1 PMID: 6304321 best DB hits: BLAST: gb:AAG18734.1; (AE004978) type I restriction modification enzyme,; E=6e-23 swissprot:P06990; T1SB_ECOLI TYPE I RESTRICTION ENZYME ECOBI; E=8e-16 pir:B64316; restriction modification system S chain homolog -; E=2e-12 COG: VNG0107G; COG0732 Restriction endonuclease S subunits; E=6e-24 PFAM: PF01420; Type I restriction modification; E=1.6e-10 NP_870065.1 PMID: 8412658 best DB hits: BLAST: gb:AAG59531.1; AE005666_3 (AE005666) restriction; E=5e-31 swissprot:Q07736; T1RA_ECOLI TYPE I RESTRICTION ENZYME ECOAI R; E=6e-31 swissprot:P08956; T1RK_ECOLI TYPE I RESTRICTION ENZYME ECOKI R; E=1e-30 COG: hsdR; COG0610 Restriction enzymes type I helicase subunits and; E=1e-31 VC0812_2; COG1061 DNA or RNA helicases of superfamily II; E=9e-13 MJECL40; COG0610 Restriction enzymes type I helicase subunits and; E=3e-05 PFAM: PF00270; DEAD/DEAH box helicase; E=1.5e-06 PF00271; Helicase conserved C-terminal doma; E=0.00061 NP_870067.1 PMID: 8051008 best DB hits: BLAST: pir:G69754; hypothetical protein yccF - Bacillus subtilis -----; E=0.030 ddbj:BAB07325.1; (AP001519) preprotein translocase subunit; E=0.082 pir:E81368; preprotein translocase SECA chain Cj0942c [imported] -; E=0.16 COG: BS_yccF; COG3318 Predicted metal-binding protein related to the; E=0.003 BH3606; COG0653 Preprotein translocase subunit SecA (ATPase, RNA; E=0.008 PFAM: PF02810; SEC-C motif; E=1.9e-08 NP_870071.1 PMID: 8576032 best DB hits: PFAM: PF01418; Helix-turn-helix domain, rpiR; E=0.00028 PF01381; Helix-turn-helix; E=0.27 NP_870073.1 PMID: 3118332 best DB hits: BLAST: swissprot:P08076; STRR_STRGR STREPTOMYCIN BIOSYNTHESIS OPERON; E=5e-04 pir:C26674; streptomycin resistance hypothetical protein I -; E=0.032 embl:CAB45047.1; (AL078635) transcriptional regulator; E=0.12 NP_870080.1 PMID: 8412658 best DB hits: BLAST: gb:AAG59530.1; AE005666_2 (AE005666) restriction; E=1e-32 swissprot:Q47282; T1ME_ECOLI TYPE I RESTRICTION ENZYME ECOEI M; E=5e-32 pir:A47200; EcoA system protein M - Escherichia coli ----- gb:; E=5e-32 COG: hsdM; COG0286 Type I restriction-modification system; E=1e-19 PFAM: PF02506; Type I restriction modification s; E=7e-11 PF02384; N-6 DNA Methylase; E=1.9e-15 NP_870081.1 PMID: 6304321 best DB hits: BLAST: pir:B64316; restriction modification system S chain homolog -; E=8e-25 pir:G82522; type I restriction-modification system specificity; E=3e-22 pir:C82823; type I restriction-modification system specificity; E=4e-22 COG: MJ0130m; COG0732 Restriction endonuclease S subunits; E=8e-26 PFAM: PF01420; Type I restriction modification D; E=2.6e-32 NP_870082.1 PMID: 10545495 best DB hits: BLAST: gb:AAF63384.1; (AF245277) kinesin Unc104KIF1a homolog; E=0.024 swissprot:P08799; MYS2_DICDI MYOSIN II HEAVY CHAIN, NON MUSCLE; E=0.12 swissprot:P50533; XCPE_XENLA CHROMOSOME ASSEMBLY PROTEIN XCAP-E; E=0.14 NP_870085.1 PMID: 10086841 best DB hits: BLAST: gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=6e-10 gb:AAG09709.1; AF218837_4 (AF218837) unknown [Pasteurella; E=3e-09 ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=4e-09 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=4e-10 PFAM: PF01408; Oxidoreductase, NAD-bindi; E=2.1e-18 NP_870087.1 PMID: 10984043 best DB hits: BLAST: swissprot:Q09296; YQO6_CAEEL HYPOTHETICAL 55.9 KD PROTEIN EEED8.6; E=3e-08 pir:H83290; conserved hypothetical protein PA2831 [imported] -; E=7e-07 pir:T33157; hypothetical protein F56H1.5 - Caenorhabditis elegans; E=9e-07 COG: PA2831; COG2866 Predicted carboxypeptidase; E=7e-08 NP_870088.1 PMID: 9371463 best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=0.001 pir:T26310; hypothetical protein W09D6.1 - Caenorhabditis elegans; E=0.64 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=1e-04 PFAM: PF01011; PQQ enzyme repeat; E=0.047 NP_870090.1 PMID: 9294455 best DB hits: BLAST: embl:CAB61680.1; (AL133213) transmembrane transport; E=6e-11 pir:T47026; hypothetical protein [imported] - Yersinia pestis; E=4e-08 swissprot:P46333; CSBC_BACSU PROBABLE METABOLITE TRANSPORT PROTEIN; E=2e-07 COG: BS_yxcC; COG0477 Permeases of the major facilitator superfamily; E=2e-08 PFAM: PF00083; Sugar (and other) transporter; E=2.7e-13 NP_870094.1 PMID: 3595559 best DB hits: BLAST: gb:AAF13178.1; AF181079_1 (AF181079) sensor kinase homolog; E=2e-28 pir:D83491; probable sensorresponse regulator hybrid PA1243; E=4e-28 gb:AAG00949.1; AF273679_3 (AF273679) FixL [Rhizobium etli]; E=3e-27 COG: PA1243; COG0642 Sensory transduction histidine kinases; E=4e-29 PFAM: PF00512; His Kinase A (phosphoacceptor) doma; E=5.2e-12 PF02518; Histidine kinase-, DNA gyrase B-, p; E=3.1e-28 NP_870095.1 PMID: 8346225 best DB hits: BLAST: swissprot:Q06065; ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY; E=5e-91 swissprot:P03029; NTRC_KLEPN NITROGEN ASSIMILATION REGULATORY; E=4e-90 embl:CAA26473.1; (X02617) pot. ntrC gene product (aa 1-469); E=8e-90 COG: atoC; COG2204 AAA superfamily ATPases with N-terminal receiver; E=4e-92 PFAM: PF00072; Response regulator receiver doma; E=2.3e-29 PF00158; Sigma-54 interaction domain; E=5.1e-128 NP_870096.1 PMID: 2974033 best DB hits: BLAST: pir:A75265; ferric enterobactin esterase-related protein -; E=0.002 COG: DR2506; COG2382 Enterochelin esterase and related enzymes; E=2e-04 NP_870099.1 binds to the ribosome on the universally-conserved alpha-sarcin loop NP_870113.1 PMID: 2033061 PMID: 1447141 best DB hits: BLAST: gb:AAC16417.1; (AF026386) WaaA [Salmonella typhimurium]; E=4e-53 gb:AAC69691.1; (AF019747) Kdo transferase WaaA [Escherichia coli]; E=9e-52 swissprot:P23282; KDTA_ECOLI 3-DEOXY-D-MANNO-OCTULOSONIC-ACID; E=1e-51 COG: kdtA; COG1519 3-Deoxy-D-manno-octulosonic-acid transferase; E=9e-53 NP_870114.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins NP_870115.1 PMID: 10653753 best DB hits: BLAST: embl:CAB72937.1; (AJ243321) hypothetical protein [Lactobacillus; E=7e-27 embl:CAB88179.1; (AL352972) hypothetical protein SCC30.09c; E=1e-25 gb:AAF45006.1; AE003406_211 (AE003416) symbol=anon-35F36A; E=5e-23 COG: Cj0705; COG0327 Uncharacterized ACR; E=2e-16 PFAM: PF01784; Domain of unknown function DUF34; E=8.3e-47 NP_870116.1 PMID: 8905231 best DB hits: BLAST: swissprot:Q04737; Y751_SYNY3 HYPOTHETICAL 27.8 KD PROTEIN SLR0751; E=0.29 ddbj:BAA76764.1; (AB023137) KIAA0920 protein [Homo sapiens]; E=0.73 NP_870120.1 PMID: 3057437 best DB hits: BLAST: pir:F72359; periplasmic serine proteinase Do (EC 3.4.21.-) -; E=9e-41 pir:F81329; serine proteinase (proteinase DO) (EC 3.4.21.-) Cj1228c; E=2e-40 embl:CAA57948.1; (X82628) serine protease [Campylobacter jejuni]; E=2e-40 COG: TM0571; COG0265 Trypsin-like serine proteases, typically; E=8e-42 CT823; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=2e-40 PA0766; COG0265 Trypsin-like serine proteases, typically; E=5e-40 PFAM: PF00089; Trypsin; E=3.8e-20 PF00595; PDZ domain (Also known as DHR or GLG; E=4.9e-06 NP_870122.1 PMID: 10360571 best DB hits: BLAST: pir:C72318; hypothetical protein - Thermotoga maritima (strain MSB8); E=7e-04 NP_870123.1 PMID: 7908117 best DB hits: BLAST: pir:C72027; swisnf family helicase_2 - Chlamydophila pneumoniae; E=1e-50 gb:AAC71234.1; (U39681) ATP-dependent RNA helicase, ; E=4e-50 ddbj:BAA99057.1; (AP002548) SWISNF family helicase_2; E=5e-50 COG: CPn0849; COG0553 Superfamily II DNA/RNA helicases, SNF2 family; E=1e-51 PFAM: PF01102; Glycophorin A; E=0.41 PF00176; SNF2 and others N-terminal doma; E=6.4e-34 PF00271; Helicase conserved C-terminal d; E=1e-17 NP_870127.1 PMID: 9734811 PMID: 95299934 PMID: 9262406 best DB hits: BLAST: ddbj:BAA31647.1; (AB014572) KIAA0672 protein [Homo sapiens]; E=0.007 pir:T12533; hypothetical protein DKFZp434B034.1 - human (fragment); E=0.010 NP_870129.1 PMID: 8905231 PMID: 10561547 best DB hits: BLAST: swissprot:P73599; YD04_SYNY3 HYPOTHETICAL 32.8 KDA PROTEIN SLL1304; E=1e-25 swissprot:O50580; DT3E_PSECI D-TAGATOSE 3-EPIMERASE -----; E=2e-25 swissprot:Q9WYP7; Y416_THEMA HYPOTHETICAL PROTEIN TM0416 -----; E=3e-14 COG: sll1304; COG1082 Predicted endonucleases; E=1e-26 NP_870131.1 PMID: 10984043 best DB hits: BLAST: pir:F83604; hypothetical protein PA0339 [imported] - Pseudomonas; E=1e-10 ddbj:BAB05446.1; (AP001512) BH1727~unknown conserved protein in; E=5e-08 swissprot:P54797; T10_MOUSE SERTHR-RICH PROTEIN T10 IN DGCR; E=6e-07 COG: PA0339; COG3332 Uncharacterized ACR; E=1e-11 NP_870134.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_870137.1 best DB hits: PFAM: PF02030; Hypothetical mycoplasma lipopro; E=0.82 NP_870140.1 PMID: 2824781 best DB hits: BLAST: gb:AAG58100.1; AE005527_3 (AE005527) unknown protein encoded by; E=0.002 gb:AAG53987.1; AF327445_1 (AF327445) transposase A; E=0.003 gb:AAF28119.1; AF153317_15 (AF153317) InsA [Shigella; E=0.007 COG: PA1937; COG2963 Transposase; E=0.004 PFAM: PF01381; Helix-turn-helix; E=0.53 PF01527; Transposase; E=6.1e-18 NP_870141.1 PMID: 1482189 PMID: 11337471 PMID: 1482192 best DB hits: BLAST: gb:AAA88919.1; (U13013) ORFB [Leptospira interrogans]; E=3e-47 gb:AAA88916.1; (U13012) ORFB [Leptospira interrogans]; E=1e-46 gb:AAC05649.1; (AF038931) probable transposase-related protein; E=1e-45 COG: DRB0019.2; COG2801 transposase; E=1e-35 PFAM: PF00665; Integrase core domain; E=4.8e-40 NP_870144.1 PMID: 9440525 best DB hits: BLAST: swissprot:P36999; RRMA_ECOLI RIBOSOMAL RNA LARGE SUBUNIT; E=2e-21 gb:AAG56811.1; AE005405_2 (AE005405) enzyme [Escherichia; E=1e-20 pir:F83500; rRNA methyltransferase PA1161 [imported] - Pseudomonas; E=4e-20 COG: rrmA; COG0500 SAM-dependent methyltransferases; E=2e-22 NP_870149.1 PMID: 1654502 best DB hits: BLAST: swissprot:P09400; STRI_STRGR STREPTOMYCIN BIOSYNTHESIS PROTEIN; E=7e-09 ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=5e-06 swissprot:P40332; YISS_BACSU HYPOTHETICAL 37.5 KD PROTEIN IN; E=0.014 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=4e-07 PFAM: PF01408; Oxidoreductase, NAD-bindi; E=1.4e-05 NP_870154.1 PMID: 98010624 best DB hits: BLAST: pir:T08615; aggregation factor core protein MAFp3, isoform C -; E=1e-12 pir:T08617; aggregation factor core protein MAFp3, isoform E -; E=4e-12 pir:T08614; aggregation factor core protein MAFp3, isoform B -; E=5e-08 PFAM: PF00028; Cadherin domain; E=1.6e-12 NP_870157.1 PMID: 9739094 PMID: 1625703 PMID: 10567266 best DB hits: BLAST: pir:B75578; zinc metalloendopeptidase, leishmanolysin family -; E=8e-12 gb:AAB97895.1; (AF037165) major surface glycoprotein [Leishmania; E=0.007 gb:AAB97896.1; (AF037166) major surface glycoprotein [Leishmania; E=0.007 PFAM: PF01457; Leishmanolysin; E=0.063 NP_870159.1 PMID: 2824781 best DB hits: BLAST: gb:AAG58100.1; AE005527_3 (AE005527) unknown protein encoded by; E=0.002 gb:AAG53987.1; AF327445_1 (AF327445) transposase A; E=0.003 gb:AAF28119.1; AF153317_15 (AF153317) InsA [Shigella; E=0.007 COG: PA1937; COG2963 Transposase; E=0.004 PFAM: PF01381; Helix-turn-helix; E=0.53 PF01527; Transposase; E=6.1e-18 NP_870160.1 PMID: 1482189 PMID: 11337471 PMID: 1482192 best DB hits: BLAST: gb:AAA88919.1; (U13013) ORFB [Leptospira interrogans]; E=3e-47 gb:AAA88916.1; (U13012) ORFB [Leptospira interrogans]; E=1e-46 gb:AAC05649.1; (AF038931) probable transposase-related protein; E=1e-45 COG: DRB0019.2; COG2801 transposase; E=1e-35 PFAM: PF00665; Integrase core domain; E=4.8e-40 NP_870165.1 PMID: 20365717 best DB hits: BLAST: pir:E83347; hypothetical protein PA2395 [imported] - Pseudomonas; E=2e-20 pir:E82768; conserved hypothetical protein XF0752 [imported] -; E=5e-20 pir:A82381; conserved hypothetical protein VCA1077 [imported] -; E=2e-14 COG: PA2395; COG1262 Uncharacterized BCR; E=2e-21 NP_870169.1 PMID: 3129532 PMID: 2507870 PMID: 8160014 best DB hits: BLAST: swissprot:P21458; SP3E_BACSU STAGE III SPORULATION PROTEIN E; E=1e-108 pir:C69999; DNA translocase stage III sporulation homolog ytpT -; E=1e-106 swissprot:P45264; FTSK_HAEIN CELL DIVISION PROTEIN FTSK HOMOLOG; E=1e-105 COG: BS_spoIIIE; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related; E=1e-109 ftsK; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; E=6e-97 CT739; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related; E=6e-97 PFAM: PF01580; FtsK/SpoIIIE family; E=9.7e-66 NP_870170.1 PMID: 9537320 best DB hits: BLAST: swissprot:O67820; IMDH_AQUAE INOSINE-5'-MONOPHOSPHATE; E=1e-144 ddbj:BAB03739.1; (AP001507) inositol-monophosphate dehydrogenase; E=1e-140 pir:JC7305; IMP dehydrogenase (EC 1.1.1.205) - Bacillus cereus; E=1e-134 COG: Ta0219; COG0516 IMP dehydrogenase/GMP reductase; E=1e-112 PFAM: PF01574; IMP dehydrogenase / GMP reduc; E=4.3e-49 PF00571; CBS domain; E=2.5e-08 PF01070; FMN-dependent dehydrogenase; E=0.00039 NP_870174.1 best DB hits: BLAST: gb:AAF51529.1; (AE003590) CG18326 gene product [Drosophila; E=0.32 NP_870176.1 PMID: 9371463 PMID: 12001234 best DB hits: BLAST: gb:AAB90470.1; (AE001051) nucleoside diphosphate kinase (ndk); E=1e-36 swissprot:O26358; NDK_METTH NUCLEOSIDE DIPHOSPHATE KINASE (NDK); E=1e-35 pir:D75044; nucleoside diphosphate kinase (ndk) PAB1489 - Pyrococcus; E=2e-35 COG: AF0767; COG0105 Nucleoside diphosphate kinase; E=1e-37 PFAM: PF00334; Nucleoside diphosphate kinases; E=3.4e-61 NP_870178.1 PMID: 10984043 best DB hits: BLAST: pir:A83254; hypothetical protein PA3130 [imported] - Pseudomonas; E=5e-08 swissprot:P77712; YBAW_ECOLI HYPOTHETICAL 15.1 KD PROTEIN IN; E=0.43 gb:AAG54793.1; AE005223_8 (AE005223) orf, hypothetical protein; E=0.46 COG: PA3130; COG0824 Predicted thioesterase; E=5e-09 NP_870179.1 best DB hits: BLAST: pir:T16283; hypothetical protein F35H10.10 - Caenorhabditis elegans; E=0.58 gb:AAB51198.1; (U70870) CELF35-1 [Caenorhabditis elegans]; E=0.58 NP_870183.1 PMID: 10567266 best DB hits: BLAST: swissprot:Q9RTB6; MSRA_DEIRA PEPTIDE METHIONINE SULFOXIDE; E=3e-53 embl:CAC23591.1; (AL512971) peptide methionine sulfoxide; E=3e-45 gb:AAG19555.1; (AE005045) peptide methionine sulfoxide reductase; E=5e-43 COG: DR1849; COG0225 Peptide methionine sulfoxide reductase; E=3e-54 PFAM: PF01625; Peptide methionine sulfoxide reducta; E=5.8e-84 NP_870185.1 PMID: 1640836 PMID: 93174466 best DB hits: BLAST: gb:AAC70103.1; (AF074613) type II secretion protein [Escherichia; E=3e-15 pir:C82327; MSHA biogenesis protein MshG VC0406 [imported] - Vibrio; E=9e-15 gb:AAA96018.1; (U35009) MshG [Vibrio cholerae]; E=3e-13 COG: VC0406; COG1459 General secretory pathway protein F; E=8e-16 PFAM: PF00482; Bacterial type II secretion system p; E=3.4e-05 NP_870186.1 PMID: 1551827 PMID: 95352066 best DB hits: BLAST: swissprot:P19465; GCH1_BACSU GTP CYCLOHYDROLASE I (GTP-CH-I); E=1e-59 ddbj:BAB05365.1; (AP001512) GTP cyclohydrolase I [Bacillus; E=1e-57 swissprot:O06273; GCH1_MYCTU GTP CYCLOHYDROLASE I (GTP-CH-I); E=4e-53 COG: BS_mtrA; COG0302 GTP cyclohydrolase I; E=1e-60 PFAM: PF01227; GTP cyclohydrolase I; E=2.3e-110 NP_870189.1 PMID: 7934828 best DB hits: BLAST: swissprot:P39599; YWCA_BACSU HYPOTHETICAL 55.0 KD PROTEIN IN; E=3e-34 pir:F83241; probable sodium:solute symporter PA3234 [imported] -; E=1e-33 gb:AAK01502.1; (AF241171) amino acid transport protein; E=3e-32 COG: BS_ywcA; COG0591 Na+/proline, Na+/panthothenate symporters and; E=3e-35 yjcG; COG0591 Na+/proline, Na+/panthothenate symporters and related; E=7e-33 XF2251; COG0591 Na+/proline, Na+/panthothenate symporters and; E=2e-30 PFAM: PF00474; Sodium:solute symporter famil; E=3.8e-37 NP_870191.1 PMID: 9403685 PMID: 1840580 best DB hits: BLAST: pir:D70166; phnP protein (phnP) homolog - Lyme disease spirochete; E=3e-47 pir:E71649; hypothetical protein RP869 - Rickettsia prowazekii; E=2e-35 ddbj:BAB02903.1; (AB028610) hydrolase-like protein [Arabidopsis; E=1e-31 COG: BB0533; COG1235 Metal-dependent hydrolases of the beta-lactamase; E=2e-48 PFAM: PF00753; Metallo-beta-lactamase superfamil; E=1.1e-06 NP_870193.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs NP_870197.1 PMID: 10984043 best DB hits: BLAST: pir:F83601; hypothetical protein PA0356 [imported] - Pseudomonas; E=3e-15 pir:H82508; conserved hypothetical protein VCA0034 [imported] -; E=3e-11 pir:G72324; hypothetical protein - Thermotoga maritima (strain MSB8); E=1e-10 COG: PA0356; COG1639 Uncharacterized BCR; E=3e-16 NP_870199.1 PMID: 7628442 PMID: 7542800 best DB hits: BLAST: pir:H72034; thiol-disulfide interchange protein dsbD [imported] -; E=7e-48 pir:G81503; thiol-disulfide interchange protein DSbD homolog CP1086; E=7e-48 pir:C81653; probable thiol-disulfide interchange protein dsbD; E=8e-47 COG: CPn0786; COG0526 Thiol-disulfide isomerase and thioredoxins; E=6e-49 BH1194; COG0785 Cytochrome c biogenesis protein; E=0.002 NP_870200.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE NP_870201.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress NP_870202.1 PMID: 3057437 PMID: 10761919 best DB hits: BLAST: pir:B81914; probable periplasmic serine proteinase (EC 3.4.21.-); E=2e-47 gb:AAK01318.1; (AF190580) MucD [Pseudomonas syringae pv.; E=8e-47 pir:F83550; serine proteinase MucD precursor PA0766 [imported] -; E=1e-46 COG: NMB0532; COG0265 Trypsin-like serine proteases, typically; E=6e-48 RP124; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=7e-45 CPn0979; COG0265 Trypsin-like serine proteases, typically; E=3e-44 PFAM: PF00089; Trypsin; E=1.9e-16 PF00595; PDZ domain (Also known as DHR or GL; E=3.1e-09 NP_870203.1 PMID: 2526291 PMID: 8969508 PMID: 9384377 best DB hits: BLAST: pir:PC1224; cytidine deaminase (EC 3.5.4.5) - human (fragment); E=3e-25 gb:AAD15828.1; (AF061658) cytidine deaminase [Homo sapiens]; E=3e-25 embl:CAB51906.1; (AJ237978) cytidine deaminase [Bacillus; E=6e-25 COG: BS_cdd; COG0295 Cytidine deaminase; E=8e-26 PFAM: PF00383; Cytidine and deoxycytidylate de; E=1.3e-23 NP_870206.1 PMID: 10984043 best DB hits: BLAST: pir:G83561; hypothetical protein PA0670 [imported] - Pseudomonas; E=4e-07 NP_870207.1 PMID: 10984043 best DB hits: BLAST: pir:H83561; hypothetical protein PA0671 [imported] - Pseudomonas; E=5e-05 NP_870209.1 PMID: 11679669 best DB hits: PFAM: PF02370; M protein repeat; E=0.41 NP_870211.1 best DB hits: BLAST: swissprot:P49453; CENC_SHEEP CENTROMERE PROTEIN C (CENP-C); E=0.84 NP_870213.1 PMID: 11078650 best DB hits: BLAST: gb:AAF64052.1; AF242367_1 (AF242367) hypothetical; E=1e-10 embl:CAA63806.1; (X93605) hypothetical protein [Zymomonas; E=4e-08 pir:D72219; conserved hypothetical protein - Thermotoga maritima; E=5e-07 COG: TM1720; COG0454 Histone acetyltransferase HPA2 and related; E=4e-08 PFAM: PF00583; Acetyltransferase (GNAT) family; E=4.9e-11 NP_870214.1 best DB hits: BLAST: gb:AAF00629.1; AC009540_6 (AC009540) unknown protein [Arabidopsis; E=1e-04 gb:AAF61443.1; AF139187_1 (AF139187) root border cell-specific; E=5e-04 pir:E83098; hypothetical protein PA4388 [imported] - Pseudomonas; E=0.020 COG: PA4388; COG0748 Uncharacterized BCR; E=0.002 NP_870215.1 best DB hits: PFAM: PF01330; RuvA N terminal domain; E=0.83 NP_870216.1 PMID: 1657871 PMID: 10086841 best DB hits: BLAST: pir:H72289; hypothetical protein TM1132 - Thermotoga maritima; E=5e-70 ddbj:BAB04323.1; (AP001509) methanol dehydrogenase regulatory; E=4e-69 pir:S75782; methanol dehydrogenase regulatory protein -; E=3e-67 COG: TM1132; COG0714 MoxR-like ATPases; E=5e-71 PFAM: PF00004; ATPase associated with va; E=0.00074 PF01506; Hepatitis C virus non-structural; E=0.69 PF01078; Magnesium chelatase, subunit Chl; E=8.1e-11 NP_870217.1 best DB hits: BLAST: pir:A75012; conserved hypothetical protein PAB1277 - Pyrococcus; E=2e-04 pir:S75346; hypothetical protein slr2013 - Synechocystis sp. (strain; E=0.001 pir:H71125; hypothetical protein PH0774 - Pyrococcus horikoshii; E=0.014 COG: PAB1277; COG1721 Uncharacterized ACR; E=2e-05 PFAM: PF01882; Protein of unknown function DUF58; E=2e-08 NP_870218.1 PMID: 99009353 PMID: 10086841 best DB hits: BLAST: pir:F70464; hypothetical protein aq_1912 - Aquifex aeolicus -----; E=1e-13 ddbj:BAB04325.1; (AP001509) BH0606~unknown conserved protein; E=4e-10 pir:F83287; hypothetical protein PA2873 [imported] - Pseudomonas; E=3e-07 COG: aq_1912; COG1305 transglutaminases, cysteine; E=1e-14 PFAM: PF01841; Transglutaminase-like superfam; E=7e-11 NP_870219.1 best DB hits: BLAST: pir:E81162; conserved hypothetical protein NMB0742 [imported] -; E=0.034 pir:B81942; hypothetical protein NMA0955 [imported] - Neisseria; E=0.034 gb:AAG23848.1; (AF129396) unknown [Pseudomonas resinovorans]; E=0.11 NP_870220.1 PMID: 8325851 PMID: 7771772 best DB hits: BLAST: swissprot:P77596; YAGF_ECOLI HYPOTHETICAL 69.4 KD PROTEIN IN; E=0.0 swissprot:P39358; YJHG_ECOLI HYPOTHETICAL 70.0 KD PROTEIN IN; E=0.0 pir:S56522; hypothetical protein f655 - Escherichia coli -----; E=0.0 COG: yagF; COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; E=0.0 MJ1276; COG0129 Dihydroxyacid dehydratase/phosphogluconate; E=5e-48 ilvD; COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; E=2e-34 PFAM: PF00920; Dehydratase; E=3.6e-208 NP_870221.1 PMID: 10086841 best DB hits: BLAST: ddbj:BAB04716.1; (AP001510) BH0997~unknown conserved protein; E=2e-44 ddbj:BAB05396.1; (AP001512) BH1677~unknown conserved protein; E=2e-41 pir:F70011; hypothetical protein yugP - Bacillus subtilis -----; E=8e-39 COG: BH0997; COG2738 Predicted Zn-dependent protease; E=2e-45 NP_870222.1 PMID: 10086841 best DB hits: BLAST: ddbj:BAB06330.1; (AP001516) BH2611~unknown conserved protein; E=4e-08 pir:F69930; conserved hypothetical protein yozB - Bacillus subtilis; E=1e-07 swissprot:Q04453; YCT1_BACFI HYPOTHETICAL 21.0 KD PROTEIN IN CTAF; E=8e-07 COG: BH2611; COG2322 Predicted membrane protein; E=4e-09 NP_870223.1 PMID: 1944230 PMID: 7592491 best DB hits: BLAST: ddbj:BAB07054.1; (AP001518) BH3335~unknown conserved protein; E=6e-19 swissprot:P54178; YPMQ_BACSU HYPOTHETICAL 21.6 KDA PROTEIN IN ILVA; E=1e-12 ddbj:BAB06623.1; (AP001517) BH2904~unknown conserved protein; E=2e-12 COG: BH3335; COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in; E=6e-20 BH2868; COG0526 Thiol-disulfide isomerase and thioredoxins; E=1e-04 DR1886; COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in; E=2e-04 PFAM: PF02630; SCO1/SenC; E=1.7e-14 NP_870225.1 PMID: 10567266 best DB hits: BLAST: pir:H70731; probable esterase - Mycobacterium tuberculosis (strain; E=2e-18 pir:B70961; probable esterase - Mycobacterium tuberculosis (strain; E=5e-18 pir:B75555; probable lipaseesterase - Deinococcus radiodurans; E=5e-16 COG: Rv2284; COG0657 Acetyl esterase; E=2e-19 APE2441; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; E=7e-05 BS_pnbA; COG2272 Carboxylesterase type B; E=1e-04 NP_870227.1 PMID: 9371463 PMID: 1924314 best DB hits: BLAST: pir:B69012; probable membrane protein MTH1092 - Methanobacterium; E=7e-22 gb:AAB89369.1; (AE000972) daunorubicin resistance membrane; E=5e-14 pir:D75108; daunorubicin resistance membrane protein (drrb) PAB1924; E=9e-14 COG: MTH1092; COG0842 Permease component of an ABC-transporter; E=6e-23 NP_870228.1 PMID: 8843436 best DB hits: BLAST: embl:CAC08315.1; (AL392149) ABC transport system; E=7e-48 pir:C69012; ABC transporter (ATP-binding, daunorubicin resistance) -; E=7e-44 pir:S32908; hypothetical protein 4 - Streptomyces antibioticus; E=4e-43 COG: MTH1093; COG1131 ABC-type multidrug transport system, ATPase; E=7e-45 BH1054_2; COG0842 Permease component of an ABC-transporter; E=7e-34 ybhF; COG1131 ABC-type multidrug transport system, ATPase component; E=9e-34 PFAM: PF01078; Magnesium chelatase, subunit Ch; E=0.047 PF00005; ABC transporter; E=8.8e-55 NP_870229.1 PMID: 8253713 PMID: 9537320 best DB hits: BLAST: gb:AAH00060.1; AAH00060 (BC000060) Unknown (protein for MGC:2077); E=9e-25 gb:AAF52915.1; (AE003628) CG5037 gene product [Drosophila; E=2e-24 gb:AAA21148.1; (U09466) heme A:farnesyltransferase [Homo sapiens]; E=4e-24 COG: YPL172c; COG0109 Polyprenyltransferase (cytochrome oxidase assembly; E=9e-23 VNG0666G_2; COG0109 Polyprenyltransferase (cytochrome oxidase; E=8e-11 AF2036; COG0109 Polyprenyltransferase (cytochrome oxidase assembly; E=4e-09 PFAM: PF01943; Polysaccharide biosynthesis pro; E=0.44 PF01040; UbiA prenyltransferase; E=1.5e-31 NP_870230.1 PMID: 8905231 best DB hits: BLAST: pir:S75621; hypothetical protein sll1898 - Synechocystis sp. (strain; E=7e-06 pir:D70314; heme O oxygenase - Aquifex aeolicus ----- gb:; E=0.14 COG: sll1898; COG1612 Uncharacterized protein required for cytochrome; E=7e-07 PFAM: PF02628; Cytochrome oxidase assembly protei; E=0.0068 NP_870232.1 PMID: 21429239 best DB hits: BLAST: embl:CAC28871.1; (AJ278984) PbrT protein [Ralstonia; E=0.003 pir:B82990; hypothetical protein PA5248 [imported] - Pseudomonas; E=0.017 swissprot:Q04441; COX2_BACFI CYTOCHROME C OXIDASE POLYPEPTIDE II; E=0.74 COG: PA5248_1; COG2010 Cytochrome c, mono- and diheme variants; E=0.003 PFAM: PF00034; Cytochrome c; E=0.23 NP_870235.1 PMID: 8905231 best DB hits: BLAST: pir:A75561; conserved hypothetical protein - Deinococcus radiodurans; E=6e-16 embl:CAA66627.1; (X97985) ORF4 [Staphylococcus aureus]; E=1e-13 pir:S76793; hypothetical protein - Synechocystis sp. (strain PCC; E=3e-11 COG: DR0089; COG0463 Glycosyltransferases involved in cell wall; E=6e-17 MTH548; COG0784 CheY-like receiver domains; E=1e-06 PAB1246; COG1215 Glycosyltransferases, probably involved in cell; E=2e-06 PFAM: PF00535; Glycosyl transferase; E=3.5e-23 NP_870236.1 PMID: 7588751 best DB hits: BLAST: pir:S68196; hypothetical protein 9 - Myxococcus xanthus -----; E=5e-06 PFAM: PF01553; Acyltransferase; E=0.013 NP_870237.1 PMID: 7588751 PMID: 2263648 best DB hits: BLAST: swissprot:P54979; CRTJ_MYXXA PHYTOENE DEHYDROGENASE (PHYTOENE; E=2e-50 embl:CAA66626.1; (X97985) ORF3 [Staphylococcus aureus]; E=2e-48 pir:T31463; probable diapophytoene dehydrogenase crtN -; E=9e-47 COG: VNG1684G; COG1233 Phytoene dehydrogenase and related proteins; E=4e-41 PFAM: PF01266; D-amino acid oxidase; E=7.4e-05 PF01494; FAD binding domain; E=1.7e-06 PF02254; KTN NAD-binding domain; E=0.026 NP_870238.1 PMID: 7934828 PMID: 9384377 PMID: 89229122 best DB hits: BLAST: pir:T03560; probable aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) -; E=1e-31 pir:D83600; probable aldehyde dehydrogenase PA0366 [imported] -; E=3e-31 gb:AAG20575.1; (AE005128) aldehyde dehydrogenase (retinol); AldY1; E=5e-31 COG: PA0366; COG1012 NAD-dependent aldehyde dehydrogenases; E=3e-32 PFAM: PF00171; Aldehyde dehydrogenase; E=2.5e-20 NP_870239.1 best DB hits: BLAST: ddbj:BAB13707.1; (AB040150) thermophilic NAD(P)H-flavin; E=2e-18 pir:B72384; bacterioferritin comigratory proteinNADH dehydrogenase; E=5e-08 swissprot:O26223; Y120_METTH NADH DEHYDROGENASENAD(P)H; E=0.003 COG: TM0386_2; COG0778 Nitroreductase; E=5e-09 PFAM: PF00881; Nitroreductase; E=3.3e-13 NP_870240.1 PMID: 9278503 PMID: 9097040 PMID: 8346225 best DB hits: BLAST: pir:F71315; probable response regulatory protein (atoC) - syphilis; E=1e-60 swissprot:P09570; NIFA_AZOVI NIF-SPECIFIC REGULATORY PROTEIN; E=2e-60 pir:A48291; ornithine decarboxylase inhibitor - Escherichia coli; E=3e-60 COG: TP0519; COG2204 AAA superfamily ATPases with N-terminal receiver; E=1e-61 aq_218_2; COG1221 NtrC family transcriptional regulators, ATPase; E=2e-59 hydG; COG2204 AAA superfamily ATPases with N-terminal receiver; E=9e-58 PFAM: PF00004; ATPase associated with variou; E=0.0057 PF00158; Sigma-54 interaction domain; E=6.7e-136 NP_870241.1 PMID: 97000351 best DB hits: BLAST: ddbj:BAB21059.1; (AB037178) xanthan lyase [Bacillus sp. GL1]; E=2e-08 embl:CAB62685.1; (AL133422) membrane protein.; E=3e-08 embl:CAB62757.1; (AL133424) secreted protein; E=8e-08 PFAM: PF00070; Pyridine nucleotide-disulphide; E=0.00038 NP_870244.1 PMID: 11410353 PMID: 11856348 PMID: 8969512 PMID: 11234002 best DB hits: BLAST: pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=1e-44 swissprot:P54744; PKNB_MYCLE SERINETHREONINE-PROTEIN; E=9e-44 swissprot:P71584; PKNB_MYCTU SERINETHREONINE-PROTEIN; E=1e-42 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=1e-45 PFAM: PF00069; Protein kinase domain; E=9.2e-49 NP_870245.1 PMID: 10567266 best DB hits: BLAST: embl:CAB93400.1; (AL357524) conserved hypothetical protein; E=2e-41 pir:C75447; conserved hypothetical protein - Deinococcus radiodurans; E=2e-38 ddbj:BAB06408.1; (AP001516) BH2689~unknown conserved protein in; E=1e-29 COG: DR1011; COG2107 Predicted periplasmic solute-binding protein; E=1e-39 PFAM: PF02642; Uncharacterized ACR, COG2107; E=5.8e-43 NP_870246.1 PMID: 8990304 PMID: 7893645 best DB hits: BLAST: swissprot:Q52419; DAPB_PSESZ DIHYDRODIPICOLINATE REDUCTASE (DHPR); E=7e-46 pir:C82080; dihydrodipicolinate reductase VC2391 [imported] - Vibrio; E=2e-44 swissprot:P38103; DAPB_PSEAE DIHYDRODIPICOLINATE REDUCTASE (DHPR); E=4e-43 COG: VC2391; COG0289 Dihydrodipicolinate reductase; E=2e-45 PFAM: PF01113; Dihydrodipicolinate reductase; E=2e-45 NP_870248.1 PMID: 10360571 PMID: 95286482 best DB hits: BLAST: gb:AAG18338.1; AF268317_1 (AF268317) ComE [Neisseria gonorrhoeae]; E=2e-06 pir:F72301; comEA protein-related protein - Thermotoga maritima; E=2e-06 embl:CAB44958.1; (AJ242837) ComEA protein [Neisseria; E=3e-06 COG: TM1052; COG1555 DNA uptake protein and related DNA-binding proteins; E=2e-07 slr0197_2; COG1555 DNA uptake protein and related DNA-binding; E=7e-05 VC1917; COG1555 DNA uptake protein and related DNA-binding proteins; E=1e-04 PFAM: PF00633; Helix-hairpin-helix motif.; E=0.4 NP_870249.1 PMID: 98263372 best DB hits: BLAST: embl:CAC11346.1; (AL445063) conserved hypothetical protein; E=4e-14 pir:F72369; conserved hypothetical protein - Thermotoga maritima; E=1e-12 pir:A71457; hypothetical protein PH0311 - Pyrococcus horikoshii; E=5e-12 COG: Ta0200; COG2151 aromatic ring hydroxylating enzyme; E=4e-15 slr0067; COG0489 ATPases involved in chromosome partitioning; E=0.007 PFAM: PF01883; Domain of unknown function DUF59; E=1.4e-19 NP_870250.1 PMID: 10876240 PMID: 3294803 PMID: 9278503 PMID: 8905232 PMID: 11206551 PMID: 11258796 PMID: 10493123 best DB hits: BLAST: swissprot:P08999; YBGC_ECOLI 15.6 KDA PROTEIN IN CYDB-TOLQ; E=2e-11 pir:D82152; conserved hypothetical protein VC1840 [imported] -; E=4e-11 gb:AAK03055.1; (AE006136) unknown [Pasteurella multocida]; E=8e-11 COG: ybgC; COG0824 Predicted thioesterase; E=2e-12 NP_870251.1 PMID: 9389475 best DB hits: BLAST: pir:D69211; conserved hypothetical protein MTH835 - Methanobacterium; E=4e-09 pir:G64401; hypothetical protein MJ0815 - Methanococcus jannaschii; E=7e-06 gb:AAB90178.1; (AE001029) conserved hypothetical protein; E=5e-05 COG: MTH835; COG1821 Predicted ATP-utilizing enzymes of ATP-grasp; E=4e-10 PFAM: PF02655; Domain of unknown function DU; E=5.6e-08 NP_870253.1 PMID: 10662695 PMID: 10649995 best DB hits: BLAST: gb:AAF26921.1; AF210843_18 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF26923.1; AF210843_20 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=0.0 COG: BS_fabD; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=7e-31 PA2965; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; E=3e-28 PA5234; COG0604 NADPH:quinone reductase and related Zn-dependent; E=2e-27 PFAM: PF00108; Thiolase, N-terminal domain; E=7.3e-07 PF00109; Beta-ketoacyl synthase, N-ter; E=1e-125 PF02801; Beta-ketoacyl synthase, C-ter; E=2.5e-77 NP_870254.1 PMID: 10984043 best DB hits: BLAST: pir:B83500; probable two-component response regulator PA1157; E=3e-51 pir:F82213; DNA-binding response regulator VC1320 [imported] -; E=4e-41 pir:C83420; probable two-component response regulator PA1799; E=3e-39 COG: PA1157; COG0745 Response regulators consisting of a CheY-like; E=3e-52 rstA; COG0745 Response regulators consisting of a CheY-like receiver; E=5e-34 BS_yclJ; COG0745 Response regulators consisting of a CheY-like; E=8e-34 PFAM: PF00072; Response regulator receiver doma; E=4e-27 PF00486; Transcriptional regulatory prote; E=2.7e-17 NP_870256.1 PMID: 10984043 best DB hits: BLAST: pir:B83340; hypothetical protein PA2451 [imported] - Pseudomonas; E=3e-11 swissprot:Q01578; GNL_ZYMMO GLUCONOLACTONASE PRECURSOR; E=2e-07 swissprot:P10478; XYNZ_CLOTM ENDO-1,4-BETA-XYLANASE Z PRECURSOR; E=4e-06 COG: PA2451; COG2382 Enterochelin esterase and related enzymes; E=3e-12 BS_ybbA; COG2819 Predicted hydrolase of the alpha/beta superfamily; E=0.001 fes; COG2382 Enterochelin esterase and related enzymes; E=0.002 NP_870257.1 PMID: 11058132 best DB hits: BLAST: pir:F75516; hypothetical protein - Deinococcus radiodurans (strain; E=8e-44 ddbj:BAB07122.1; (AP001518) ABC transporter (substrate-binding; E=1e-15 gb:AAG18895.1; (AE004992) Vng0316c [Halobacterium sp. NRC-1]; E=1e-15 COG: DR0462; COG0614 ABC-type Fe3+-siderophores transport systems,; E=7e-45 PFAM: PF01497; Periplasmic binding protein; E=0.18 NP_870259.1 PMID: 8201624 best DB hits: BLAST: swissprot:Q43925; HIS3_AZOCH PHOSPHORIBOSYL-AMP CYCLOHYDROLASE; E=3e-28 pir:E83011; phosphoribosyl-AMP cyclohydrolase PA5066 [imported] -; E=5e-28 swissprot:O26347; HIS3_METTH PHOSPHORIBOSYL-AMP CYCLOHYDROLASE; E=7e-25 COG: PA5066; COG0139 Phosphoribosyl-AMP cyclohydrolase; E=5e-29 PFAM: PF01502; Phosphoribosyl-AMP cyclohydrolase; E=2.5e-43 NP_870260.1 PMID: 11058132 PMID: 7602590 PMID: 1420281 best DB hits: BLAST: ddbj:BAB04654.1; (AP001510) quinone oxidoreductase [Bacillus; E=2e-43 embl:CAB65629.1; (AL136149) oxidoreductase.; E=1e-31 swissprot:P11415; QOR_CAVPO QUINONE OXIDOREDUCTASE (NADPH:QUINONE; E=3e-31 COG: BH0935; COG0604 NADPH:quinone reductase and related Zn-dependent; E=2e-44 PA5427; COG1064 Zn-dependent alcohol dehydrogenases; E=6e-15 BH0738; COG0604 NADPH:quinone reductase and related Zn-dependent; E=5e-14 PFAM: PF00106; short chain dehydrogenase; E=0.46 PF00107; Zinc-binding dehydrogenases; E=1.6e-79 NP_870261.1 PMID: 10762268 best DB hits: BLAST: gb:AAF04854.1; AF197912_1 (AF197912) histidine protein kinase; E=3e-57 pir:E83212; probable sensorresponse regulator hybrid PA3462; E=4e-56 pir:H83132; probable sensorresponse regulator hybrid PA4112; E=8e-51 COG: PA3462; COG0642 Sensory transduction histidine kinases; E=3e-57 PFAM: PF00989; PAS domain; E=3.5e-07 PF00512; His Kinase A (phosphoacceptor; E=2.5e-21 PF02518; Histidine kinase-, DNA gyrase; E=6.8e-39 NP_870262.1 PMID: 11410353 PMID: 11856348 PMID: 8969512 PMID: 11234002 best DB hits: BLAST: swissprot:P54744; PKNB_MYCLE SERINETHREONINE-PROTEIN; E=2e-33 swissprot:P71584; PKNB_MYCTU SERINETHREONINE-PROTEIN; E=3e-33 swissprot:Q11053; PKNH_MYCTU PROBABLE SERINETHREONINE-PROTEIN; E=7e-29 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=3e-34 PFAM: PF00069; Protein kinase domain; E=6.5e-41 NP_870263.1 best DB hits: PFAM: PF00140; Sigma-70 factor; E=0.0091 PF00196; Bacterial regulatory proteins, l; E=0.0013 NP_870264.1 PMID: 10567266 PMID: 7678591 PMID: 7934817 best DB hits: BLAST: swissprot:P28606; YGLA_SYNP2 HYPOTHETICAL 34.1 KD PROTEIN IN GLNA; E=5e-60 embl:CAA78368.1; (Z13965) Portion of hypothetical protein; E=5e-60 embl:CAA78369.1; (Z13965) Portion of hypothetical protein; E=2e-54 COG: DR0833; COG0123 Deacetylases, including yeast histone deacetylase; E=3e-51 PFAM: PF00850; Histone deacetylase; E=1.2e-50 NP_870267.1 PMID: 9384377 best DB hits: BLAST: pir:B69988; hypothetical protein ytaP - Bacillus subtilis -----; E=0.20 NP_870268.1 best DB hits: BLAST: pir:E82768; conserved hypothetical protein XF0752 [imported] -; E=3e-13 pir:A82381; conserved hypothetical protein VCA1077 [imported] -; E=1e-10 pir:E83347; hypothetical protein PA2395 [imported] - Pseudomonas; E=4e-10 COG: XF0752_2; COG1262 Uncharacterized BCR; E=1e-13 NP_870269.1 PMID: 8905231 best DB hits: BLAST: pir:F72334; conserved hypothetical protein - Thermotoga maritima; E=2e-16 pir:H75400; conserved hypothetical protein - Deinococcus radiodurans; E=6e-12 pir:S75046; hypothetical protein slr1718 - Synechocystis sp. (strain; E=3e-11 COG: TM0797; COG2045 Uncharacterized ACR; E=2e-17 NP_870271.1 PMID: 9849958 best DB hits: BLAST: gb:AAG59625.1; (AF301417) GU1 [Trypanosoma brucei]; E=2e-08 gb:AAF82144.1; AC034256_8 (AC034256) Contains similarity to F-box; E=1e-06 gb:AAC77910.1; (AF061443) G protein-coupled receptor LGR4 [Rattus; E=6e-05 NP_870272.1 PMID: 8905231 PMID: 86083177 PMID: 90243674 best DB hits: BLAST: pir:S74805; DNA photolyase - Synechocystis sp. (strain PCC 6803); E=1e-121 pir:B82155; deoxyribodipyrimidine photolyase VC1814 [imported] -; E=5e-66 pir:E83062; deoxyribodipyrimidine photolyase PA4660 [imported] -; E=4e-49 COG: sll1629; COG0415 Deoxyribodipyrimidine photolyase; E=1e-123 PFAM: PF00875; DNA photolyase; E=4.8e-86 NP_870274.1 PMID: 9495747 best DB hits: BLAST: gb:AAC46146.1; (AF001974) xylulose kinase; XylB; E=1e-108 swissprot:P39211; XYLB_BACSU XYLULOSE KINASE (XYLULOKINASE); E=4e-79 ddbj:BAB06475.1; (AP001516) xylose kinase [Bacillus halodurans]; E=5e-76 COG: BS_xylB; COG1070 Sugar (pentulose and hexulose) kinases; E=4e-80 PAB2406; COG0554 Glycerol kinase; E=2e-31 APE0017; COG1070 Sugar (pentulose and hexulose) kinases; E=1e-27 PFAM: PF00370; FGGY family of carbohydrate kinas; E=6e-96 PF02782; FGGY family of carbohydrate kinas; E=7.6e-63 NP_870275.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis NP_870277.1 PMID: 10984043 PMID: 9560382 best DB hits: BLAST: pir:T35322; hypothetical protein SC5H1.06c - Streptomyces coelicolor; E=1e-20 swissprot:P46336; IOLS_BACSU IOLS PROTEIN (VEGETATIVE PROTEIN 147); E=5e-18 pir:C83506; probable oxidoreductase PA1127 [imported] - Pseudomonas; E=9e-18 COG: BS_iolS; COG0667 Predicted oxidoreductases (related to aryl-alcohol; E=5e-19 Ta0027; COG0656 Aldo/keto reductases, related to diketogulonate; E=5e-07 PFAM: PF00248; Aldo/keto reductase; E=9e-24 NP_870281.1 best DB hits: PFAM: PF00034; Cytochrome c; E=0.15 NP_870285.1 best DB hits: BLAST: ddbj:BAB04429.1; (AP001509) BH0710~unknown conserved protein; E=8e-91 pir:T34927; probable oxidoreductase - Streptomyces coelicolor; E=5e-84 embl:CAB88965.1; (AL353864) oxidoreductase.; E=3e-46 COG: BH0710; COG0673 Predicted dehydrogenases and related proteins; E=7e-92 PFAM: PF01408; Oxidoreductase, NAD-bin; E=7e-36 PF02894; Oxidoreductase, C-termi; E=6.8e-06 NP_870286.1 PMID: 8606183 PMID: 11283302 best DB hits: BLAST: pir:E82977; glycolate oxidase subunit GlcD PA5355 [imported] -; E=1e-102 pir:S74338; glycolate oxidase chain glcD - Synechocystis sp. (strain; E=1e-101 swissprot:P52075; GLCD_ECOLI GLYCOLATE OXIDASE SUBUNIT GLCD; E=1e-99 COG: PA5355; COG0277 FAD/FMN-containing dehydrogenases; E=1e-103 PFAM: PF01565; FAD binding domain; E=2.7e-55 PF02913; FAD linked oxidases, C-terminal; E=7.9e-53 NP_870287.1 PMID: 8606183 best DB hits: BLAST: pir:H65083; glycolate oxidase subunits GlcE and GlcF - Escherichia; E=6e-23 swissprot:P52073; GLCE_ECOLI GLYCOLATE OXIDASE SUBUNIT GLCE; E=6e-23 pir:D82977; glycolate oxidase subunit GlcE PA5354 [imported] -; E=1e-22 COG: glcF_1; COG0277 FAD/FMN-containing dehydrogenases; E=6e-24 PFAM: PF01565; FAD binding domain; E=6.6e-19 NP_870288.1 PMID: 8606183 best DB hits: BLAST: pir:G75361; glycolate oxidase, iron-sulfur subunit - Deinococcus; E=1e-101 pir:S75231; (S)-2-hydroxy-acid oxidase (EC 1.1.3.15) - Synechocystis; E=3e-62 ddbj:BAB05854.1; (AP001514) glycolate oxidase iron-sulfur subunit; E=2e-58 COG: DR1730; COG0247 Fe-S oxidoreductases; E=1e-102 PFAM: PF00037; 4Fe-4S binding domain; E=0.21 PF02754; Domain of unknown function (DUF2; E=4.9e-07 NP_870291.1 PMID: 8037924 PMID: 9278503 PMID: 8905232 PMID: 1931833 best DB hits: BLAST: swissprot:P25888; RHLE_ECOLI ATP-DEPENDENT RNA HELICASE; E=5e-78 gb:AAG55168.1; AE005260_7 (AE005260) ATP-dependent RNA; E=5e-78 pir:D83591; probable ATP-dependent RNA helicase PA0428 [imported] -; E=8e-77 COG: rhlE; COG0513 Superfamily II DNA and RNA helicases; E=4e-79 PFAM: PF00270; DEAD/DEAH box helicase; E=5.5e-70 PF02776; Thiamine pyrophosphate enzyme,; E=0.21 PF00271; Helicase conserved C-terminal d; E=3.5e-36 NP_870292.1 best DB hits: BLAST: pir:T49412; hypothetical protein B1D4.270 [imported] - Neurospora; E=0.89 PFAM: PF00432; Prenyltransferase and squalene ox; E=0.026 NP_870293.1 PMID: 10984043 PMID: 1644779 PMID: 2670903 best DB hits: BLAST: pir:F83274; conserved hypothetical protein PA2982 [imported] -; E=3e-04 embl:CAB50919.1; (AJ243354) hypothetical protein [Pseudomonas; E=7e-04 pir:S74451; hypothetical protein sll1405 - Synechocystis sp. (strain; E=0.001 COG: PA2982; COG0848 Biopolymer transport protein; E=3e-05 PFAM: PF02472; Biopolymer transport protein ExbD/To; E=1.6e-12 NP_870294.1 PMID: 10984043 best DB hits: BLAST: pir:G83274; probable tolQ-type transport protein PA2983 [imported] -; E=6e-07 pir:G70470; TolQ homolog - Aquifex aeolicus ----- gb:; E=3e-05 pir:D82726; conserved hypothetical protein XF1079 [imported] -; E=7e-04 COG: PA2983; COG0811 Biopolymer transport proteins; E=6e-08 PFAM: PF01618; MotA/TolQ/ExbB proton channel famil; E=6.7e-17 NP_870295.1 PMID: 10192388 best DB hits: BLAST: pir:T39943; hypothetical protein SPBC23E6.09 - fission yeast; E=2e-04 pir:C72048; tpr repeats-ct683 hypothetical protein - Chlamydophila; E=0.006 swissprot:P42810; YAG7_PSEAE HYPOTHETICAL PROTEIN PA4667 -----; E=0.24 COG: CPn0693; COG0457 TPR-repeat-containing proteins; E=6e-04 PFAM: PF00515; TPR Domain; E=0.0018 PF00903; Glyoxalase/Bleomycin resistance; E=0.85 PF00515; TPR Domain; E=0.52 NP_870297.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer NP_870298.1 best DB hits: BLAST: pir:T07014; phosphoglycerate kinase (EC 2.7.2.3) precursor,; E=0.68 NP_870302.1 PMID: 8063104 PMID: 8635757 PMID: 12000953 best DB hits: BLAST: gb:AAB89850.1; (AE001008) conserved hypothetical protein; E=2e-06 swissprot:P54741; AFSK_STRCO SERINETHREONINE PROTEIN KINASE AFSK; E=1e-05 embl:CAB88430.1; (AL353815) serinethreonine protein kinase; E=1e-05 COG: AF1399; COG1520 Uncharacterized proteins of WD40-like repeat family; E=1e-07 PFAM: PF01011; PQQ enzyme repeat; E=0.00048 NP_870305.1 PMID: 10984043 best DB hits: BLAST: pir:A83457; conserved hypothetical protein PA1501 [imported] -; E=1e-17 pir:D83577; conserved hypothetical protein PA0550 [imported] -; E=8e-13 gb:AAG54864.1; AE005231_11 (AE005231) glyoxylate-induced protein; E=5e-12 COG: PA1501; COG1082 Predicted endonucleases; E=1e-18 NP_870309.1 PMID: 1860862 PMID: 9278503 PMID: 11206551 PMID: 11258796 PMID: 7928962 PMID: 8208244 PMID: 8132457 best DB hits: BLAST: swissprot:P24206; PIMT_ECOLI PROTEIN-L-ISOASPARTATE; E=7e-39 pir:G82311; protein-L-isoaspartate O-methyltransferase VC0532; E=3e-38 swissprot:P45683; PIMT_PSEAE PROTEIN-L-ISOASPARTATE; E=9e-36 COG: pcm; COG2518 Protein-L-isoaspartate carboxylmethyltransferase; E=7e-40 PFAM: PF00398; Ribosomal RNA adenine dimethyl; E=0.12 PF01135; Protein-L-isoaspartate(D-aspar; E=6.1e-63 NP_870310.1 PMID: 8380170 PMID: 9278503 PMID: 9205837 PMID: 11206551 PMID: 11258796 PMID: 8212131 best DB hits: BLAST: pir:S76869; hypothetical protein - Synechocystis sp. (strain PCC; E=2e-32 pir:C75615; exopolyphosphatase - Deinococcus radiodurans (strain R1); E=2e-27 swissprot:P29014; PPX_ECOLI EXOPOLYPHOSPHATASE (METAPHOSPHATASE); E=4e-27 COG: sll1546; COG0248 Exopolyphosphatase; E=2e-33 PFAM: PF02541; Ppx/GppA phosphatase; E=6e-15 PF01966; HD domain; E=0.084 NP_870311.1 PMID: 11466286 best DB hits: BLAST: pir:A75406; hydrolase - Deinococcus radiodurans (strain R1) -----; E=0.048 gb:AAG59075.1; AE005619_8 (AE005619) phosphatase; E=0.11 pir:S40829; hypothetical 23.5K protein (glnA-fdhE intergenic region); E=0.12 COG: DR1344; COG1011 Predicted hydrolases of the HAD superfamily; E=0.005 PFAM: PF00702; haloacid dehalogenase-like hydrolas; E=0.72 NP_870314.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis NP_870316.1 PMID: 8244397 PMID: 8325651 best DB hits: BLAST: gb:AAA16877.1; (L13329) iduronate-2-sulfatase [Homo sapiens]; E=7e-51 gb:AAB33747.1; iduronate-2-sulfatase, IDS {EC 3.1.6.13} [human,; E=3e-50 gb:AAA37880.1; (L07921) iduronate sulfatase [Mus musculus]; E=1e-47 COG: PA0031; COG3119 Arylsulfatase A and related enzymes; E=3e-35 BS_yfnI; COG1368 Phosphoglycerol transferase and related proteins,; E=9e-04 PA0924; COG3083 Predicted hydrolase of alkaline phosphatase; E=0.004 PFAM: PF00884; Sulfatase; E=2e-22 NP_870317.1 PMID: 94292193 best DB hits: BLAST: gb:AAF30402.1; AF109924_1 (AF109924) sulfatase 1 precursor [Helix; E=1e-36 ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=6e-36 embl:CAA34667.1; (X16679) arylsulfatase [Hemicentrotus; E=4e-32 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=2e-28 PFAM: PF00884; Sulfatase; E=8.4e-49 NP_870320.1 best DB hits: BLAST: pir:T05663; hypothetical protein F22I13.120 - Arabidopsis thaliana; E=0.65 NP_870321.1 PMID: 9864319 PMID: 10984043 best DB hits: BLAST: swissprot:O67868; AMPA_AQUAE PROBABLE CYTOSOL AMINOPEPTIDASE; E=6e-73 pir:F82843; aminopeptidase AI XF0138 [imported] - Xylella; E=3e-70 swissprot:O68822; AMPA_PSEAE CYTOSOL AMINOPEPTIDASE (LEUCINE; E=1e-67 COG: aq_2099; COG0260 Leucyl aminopeptidase; E=5e-74 PFAM: PF00883; Cytosol aminopeptidase; E=1.7e-148 NP_870322.1 PMID: 9665876 PMID: 8346225 best DB hits: BLAST: ddbj:BAB06667.1; (AP001517) two-component response regulator in; E=2e-87 pir:F71315; probable response regulatory protein (atoC) - syphilis; E=1e-85 gb:AAF33506.1; (AF170176) Salmonella typhimurium transcriptional; E=5e-83 COG: BH2948; COG2204 AAA superfamily ATPases with N-terminal receiver; E=2e-88 aq_218_2; COG1221 NtrC family transcriptional regulators, ATPase; E=1e-66 CT468; COG2204 AAA superfamily ATPases with N-terminal receiver; E=5e-66 PFAM: PF00072; Response regulator receiver doma; E=1.2e-32 PF00158; Sigma-54 interaction domain; E=1.7e-122 NP_870324.1 best DB hits: BLAST: pir:T50995; related to cytoskeleton assembly control protein SLA1; E=6e-07 pir:T37781; probable cytoskeleton assembly control protein - fission; E=5e-05 embl:CAA84826.1; (Z35768) ORF YBL007c [Saccharomyces cerevisiae]; E=0.18 NP_870325.1 PMID: 8905231 PMID: 6308632 best DB hits: BLAST: swissprot:P00968; CARB_ECOLI CARBAMOYL-PHOSPHATE SYNTHASE LARGE; E=0.0 pir:S76557; carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC; E=0.0 gb:AAG10606.1; AC008030_6 (AC008030) carbamoyl phosphate synthetase; E=0.0 COG: AF1274; COG0458 Carbamoylphosphate synthase large subunit (split gene; E=0.0 carB; COG0458 Carbamoylphosphate synthase large subunit (split gene in; E=0.0 BU144; COG0458 Carbamoylphosphate synthase large subunit (split gene; E=0.0 PFAM: PF00289; Carbamoyl-phosphate synthase L; E=2.9e-53 PF02222; ATP-grasp domain; E=0.38 PF02786; Carbamoyl-phosphate synthase L; E=3.6e-108 NP_870327.1 3'-5' exonuclease of DNA polymerase III NP_870329.1 best DB hits: PFAM: PF01319; Cholesterol oxidase; E=0.23 NP_870330.1 best DB hits: BLAST: gb:AAF73802.1; AF154033_1 (AF154033) surface protein PspC; E=0.82 NP_870331.1 PMID: 9634230 PMID: 6353409 best DB hits: BLAST: swissprot:O06200; SYT_MYCTU THREONYL-TRNA SYNTHETASE; E=1e-124 pir:F83303; threonyl-tRNA synthetase PA2744 [imported] - Pseudomonas; E=8e-81 swissprot:O67583; SYT_AQUAE THREONYL-TRNA SYNTHETASE; E=2e-80 COG: Rv2614c; COG0441 Threonyl-tRNA synthetase; E=1e-125 PFAM: PF02824; TGS domain; E=2.6e-07 PF00587; tRNA synthetase class II (G, H,; E=7.8e-85 NP_870334.1 PMID: 1644752 PMID: 1644751 best DB hits: BLAST: pir:E75324; ArgEDapE/Acy1 family protein - Deinococcus radiodurans; E=1e-114 ddbj:BAB07594.1; (AP001520) BH3875~unknown conserved protein in; E=1e-103 embl:CAC01315.1; (AL390968) peptidase [Streptomyces; E=5e-82 COG: DR2025; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate; E=1e-115 YFR044c; COG0624 Acetylornithine; E=2e-65 DR2017; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate; E=7e-46 PFAM: PF01546; Peptidase M20/M25/M40; E=2e-48 NP_870335.1 PMID: 10952301 best DB hits: BLAST: swissprot:Q9KSW3; YB43_VIBCH HYPOTHETICAL PROTEIN VC1143 -----; E=2e-07 swissprot:Q9I0L7; YQ21_PSEAE HYPOTHETICAL PROTEIN PA2621; E=2e-04 swissprot:P75832; YLJA_ECOLI PROTEIN YLJA ----- pir: A64827; E=9e-04 COG: VC1143; COG2127 Uncharacterized ACR; E=2e-08 PFAM: PF02617; Uncharacterized ACR, COG2127; E=1.6e-08 NP_870336.1 PMID: 10086841 best DB hits: BLAST: ddbj:BAB05070.1; (AP001511) BH1351~unknown conserved protein; E=4e-78 swissprot:P54462; YQEV_BACSU HYPOTHETICAL 51.7 KD PROTEIN IN; E=3e-75 pir:G81594; conserved hypothetical protein CP0277 [imported] -; E=3e-67 COG: BH1351; COG0621 Fe-S oxidoreductases family 1; E=3e-79 PFAM: PF00919; Uncharacterized protein famil; E=3.3e-29 PF02143; Radical activating enzyme; E=0.53 NP_870337.1 best DB hits: BLAST: gb:AAG21389.1; AF302051_3 (AF302051) unknown [Bacillus; E=4e-15 ddbj:BAB07716.1; (AP001520) BH3997~unknown conserved protein in; E=6e-15 pir:C83047; conserved hypothetical protein PA4789 [imported] -; E=1e-12 COG: BH3997; COG1694 Predicted pyrophosphatase; E=6e-16 NP_870340.1 PMID: 11058132 PMID: 3045084 best DB hits: BLAST: ddbj:BAB05138.1; (AP001512) molybdopterin biosynthesis [Bacillus; E=4e-58 pir:E69845; thiamin biosynthesis homolog yjbU - Bacillus subtilis; E=3e-57 pir:F69659; molybdopterin biosynthesis protein moeB - Bacillus; E=1e-50 COG: BH1419; COG0476 Dinucleotide-utilizing enzymes involved in; E=4e-59 PFAM: PF02254; KTN NAD-binding domain; E=0.29 PF00899; ThiF family; E=1e-46 NP_870341.1 PMID: 10984043 PMID: 1729701 best DB hits: BLAST: pir:C83238; periplasmic tail-specific proteinase PA3257 [imported] -; E=5e-91 pir:F82634; tail-specific proteinase XF1823 [imported] - Xylella; E=5e-87 gb:AAK02353.1; (AE006061) Prc [Pasteurella multocida]; E=3e-75 COG: PA3257; COG0793 Periplasmic protease; E=4e-92 PFAM: PF00595; PDZ domain (Also known as DHR or GLG; E=1.1e-09 PF02692; Interphotoreceptor retinoid-binding; E=0.78 NP_870343.1 best DB hits: BLAST: ddbj:BAB18046.1; (AB033991) BtrG [Bacillus circulans]; E=0.10 NP_870348.1 PMID: 1379743 PMID: 3891733 PMID: 6099324 best DB hits: BLAST: swissprot:P00274; THIO_ECOLI THIOREDOXIN 1 (TRX1) (TRX) -----; E=3e-26 gb:AAG58975.1; AE005609_7 (AE005609) thioredoxin 1 [Escherichia; E=3e-26 pdb:2TRX; A Chain A, Thioredoxin ----- pdb: 2TRX B Chain B,; E=3e-26 COG: trxA; COG0526 Thiol-disulfide isomerase and thioredoxins; E=3e-27 PFAM: PF02114; Phosducin; E=0.01 PF00085; Thioredoxin; E=3.3e-47 NP_870349.1 PMID: 9389475 PMID: 93015679 best DB hits: BLAST: gb:AAB89052.1; (AE000953) mutator protein MutT, ; E=2e-04 swissprot:Q23236; YPAI_CAEEL HYPOTHETICAL 21.3 KD PROTEIN Y38A8.1; E=2e-04 ddbj:BAB05000.1; (AP001511) BH1281~unknown conserved protein in; E=6e-04 COG: AF2200; COG0494 NTP pyrophosphohydrolases including oxidative damage; E=2e-05 sll1054; COG0494 NTP pyrophosphohydrolases including oxidative; E=0.005 mutT; COG0494 NTP pyrophosphohydrolases including oxidative damage; E=0.007 PFAM: PF00293; MutT-like domain; E=7.1e-16 NP_870353.1 PMID: 7921252 best DB hits: BLAST: pir:E81292; flagellar P-ring protein Cj1462 [imported] -; E=5e-16 pir:G72242; flagellar P-ring protein - Thermotoga maritima (strain; E=2e-11 pir:A71957; flagellar P-ring protein - Helicobacter pylori (strain; E=3e-11 COG: Cj1462; COG1706 Flagellar basal-body P-ring protein; E=5e-17 PFAM: PF02119; Flagellar P-ring protein; E=0.00098 NP_870354.1 PMID: 2211524 PMID: 9161424 PMID: 7921252 best DB hits: BLAST: pir:A83511; flagellar L-ring protein precursor FlgH PA1083; E=2e-08 swissprot:O67609; FLGH_AQUAE FLAGELLAR L-RING PROTEIN PRECURSOR; E=6e-08 gb:AAG29750.1; AF205139_2 (AF205139) flagellar L-ring protein; E=3e-06 COG: PA1083; COG2063 Flagellar basal body L-ring protein; E=2e-09 PFAM: PF02107; Flagellar L-ring protein; E=7.9e-15 NP_870355.1 PMID: 10832645 best DB hits: BLAST: pir:C83227; hypothetical protein PA3350 [imported] - Pseudomonas; E=4e-04 gb:AAA97472.1; (U51896) LfgA [Vibrio parahaemolyticus]; E=0.012 COG: PA3350; COG1261 Flagellar basal body P-ring biosynthesis protein; E=4e-05 NP_870356.1 PMID: 2129540 best DB hits: BLAST: pir:C70372; flagellar hook basal body protein flgG - Aquifex; E=3e-55 pir:A64718; flagellar basal body rod protein flgG - Helicobacter; E=2e-51 pir:F71801; flagellar basal-body rod protein (distal rod protein) -; E=4e-51 COG: aq_834; COG1749 Flagellar basal body and hook proteins; E=2e-56 PFAM: PF00460; Flagella basal body rod protein; E=4.1e-13 NP_870357.1 PMID: 10411267 best DB hits: BLAST: gb:AAB71784.1; (U95165) FlgF [Agrobacterium tumefaciens]; E=1e-17 ddbj:BAB06168.1; (AP001515) flagellar hook protein [Bacillus; E=1e-16 swissprot:Q06171; FLGF_CAUCR FLAGELLAR BASAL-BODY ROD PROTEIN FLGF; E=3e-16 COG: BH2449; COG1749 Flagellar basal body and hook proteins; E=1e-17 PFAM: PF00460; Flagella basal body rod protein; E=0.00036 NP_870358.1 PMID: 10984043 best DB hits: BLAST: pir:F82960; hypothetical protein PA5487 [imported] - Pseudomonas; E=8e-27 pir:A71678; probable response regulatory protein RP237 - Rickettsia; E=7e-22 pir:C83247; hypothetical protein PA3177 [imported] - Pseudomonas; E=2e-21 COG: PA5487; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=8e-28 PFAM: PF00990; GGDEF domain; E=2.8e-45 NP_870362.1 best DB hits: BLAST: pir:T16625; asparagine synthase (glutamine-hydrolyzing) (EC 6.3.5.4); E=0.030 gb:AAC25799.1; (AF022973) Contains similarity to Pfam domain:; E=0.29 ddbj:BAB05227.1; (AP001512) asparagine synthetase [Bacillus; E=0.39 PFAM: PF00733; Asparagine synthase; E=0.75 NP_870364.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase NP_870366.1 PMID: 9784136 PMID: 1457399 best DB hits: BLAST: pir:A71465; probable translation initiation factor IF-3 - Chlamydia; E=3e-28 swissprot:O84840; IF3_CHLTR TRANSLATION INITIATION FACTOR IF-3; E=4e-27 pir:C81727; translation initiation factor 3 TC0221 [imported] -; E=7e-27 COG: CT833; COG0290 Translation initiation factor IF3; E=3e-29 PFAM: PF00707; Translation initiation factor IF-3; E=1.4e-74 NP_870369.1 best DB hits: BLAST: embl:CAB71199.1; (AL138538) sugar hydrolase; E=0.77 NP_870370.1 PMID: 9082984 best DB hits: BLAST: swissprot:P55636; Y4RC_RHISN INTEGRASERECOMBINASE Y4RC; E=1e-04 pir:D72312; integrase-recombinase - Thermotoga maritima; E=2e-04 gb:AAF64651.1; AF200320_1 (AF200320) IntA [Bradyrhizobium; E=3e-04 COG: TM0967; COG0582 Integrase; E=2e-05 PFAM: PF00589; Phage integrase; E=4.8e-15 NP_870372.1 best DB hits: PFAM: PF01381; Helix-turn-helix; E=8.3e-05 NP_870375.1 PMID: 11226165 best DB hits: BLAST: swissprot:Q57615; Y151_METJA HYPOTHETICAL TRANSCRIPTIONAL; E=0.77 PFAM: PF00356; Bacterial regulatory proteins,; E=0.089 PF01325; Iron dependent repressor, N-te; E=0.048 NP_870376.1 PMID: 6323420 best DB hits: BLAST: pir:E83029; replicative DNA helicase PA4931 [imported] - Pseudomonas; E=6e-04 swissprot:Q9ZJM5; DNAB_HELPJ REPLICATIVE DNA HELICASE -----; E=0.002 gb:AAK00231.1; AF229444_1 (AF229444) replicative DNA helicase DnaB; E=0.003 COG: PA4931; COG0305 Replicative DNA helicase; E=6e-05 PFAM: PF00772; DnaB-like helicase; E=4.3e-05 NP_870385.1 best DB hits: BLAST: pir:T35737; probable integral membrane protein - Streptomyces; E=0.006 NP_870392.1 PMID: 1317380 best DB hits: BLAST: swissprot:P27291; OSMY_ECOLI OSMOTICALLY INDUCIBLE PROTEIN Y; E=4e-05 gb:AAG59556.1; AE005668_11 (AE005668) hyperosmotically inducible; E=8e-05 gb:AAD56642.1; AF178441_1 (AF178441) Smc22-1 [Sinorhizobium; E=2e-04 COG: osmY; COG2823 Predicted periplasmic or secreted lipoprotein; E=4e-06 NP_870393.1 PMID: 9043130 best DB hits: BLAST: gb:AAD45539.1; U70376_1 (U70376) InsA [Streptomyces netropsis]; E=5e-33 gb:AAG60893.1; AF322013_12 (AF322013) ID460 [Bradyrhizobium; E=8e-33 ddbj:BAA19966.1; (D63923) transposase [Acetobacter pasteurianus]; E=1e-26 NP_870395.1 best DB hits: BLAST: pdb:1DBO; A Chain A, Crystal Structure Of Chondroitinase B -----; E=0.049 NP_870398.1 best DB hits: BLAST: gb:AAG19657.1; (AE005054) Vng1314h [Halobacterium sp. NRC-1]; E=3e-12 NP_870399.1 PMID: 10952301 best DB hits: BLAST: pir:H82471; hypothetical protein VCA0329 VCA0298 VCA0343; E=4e-11 NP_870400.1 PMID: 7768826 best DB hits: BLAST: swissprot:P46358; RFAY_XANCP PROBABLE RNA POLYMERASE SIGMA FACTOR; E=2e-22 ddbj:BAB03982.1; (AP001507) RNA polymerase ECF-type sigma factor; E=7e-15 swissprot:Q45585; SIGW_BACSU RNA POLYMERASE SIGMA FACTOR SIGW; E=4e-14 COG: BH0263; COG1595 DNA-directed RNA polymerase specialized sigma; E=6e-16 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=6.8e-12 NP_870402.1 best DB hits: BLAST: pir:S32217; hypothetical protein 2 - Bacillus megaterium -----; E=4e-16 pir:A82542; conserved hypothetical protein XF2574 [imported] -; E=5e-14 pir:D75404; phosphatidylglycerophosphatase B-related protein -; E=4e-13 COG: XF2574; COG0671 Membrane-associated phospholipid phosphatase; E=5e-15 PFAM: PF01569; PAP2 superfamily; E=1.4e-30 NP_870404.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine NP_870405.1 PMID: 9371463 best DB hits: BLAST: pir:D69060; hypothetical protein MTH1452 - Methanobacterium; E=5e-12 gb:AAG09974.1; AF248038_3 (AF248038) unknown [Streptococcus; E=5e-10 pir:D70381; hypothetical protein aq_943 - Aquifex aeolicus -----; E=0.017 COG: MTH1452; COG1917 Uncharacterized ACR, double-stranded beta-helix; E=5e-13 NP_870408.1 PMID: 8824840 best DB hits: BLAST: pir:JC4545; hypothetical 7.9k protein - Barophilic bacterium; E=4e-18 ddbj:BAA11902.1; (D83386) ORF1 [Shewanella violacea]; E=3e-17 ddbj:BAA25109.1; (D88194) pressure-regulated ORF1 [Mariana; E=0.006 NP_870412.1 PMID: 11759840 best DB hits: BLAST: gb:AAC04411.1; (AF047657) F37B4.8 gene product [Caenorhabditis; E=0.22 NP_870414.1 PMID: 11296222 best DB hits: BLAST: pir:S76700; hypothetical protein - Synechocystis sp. (strain PCC; E=1e-41 pir:F75546; conserved hypothetical protein - Deinococcus radiodurans; E=3e-09 gb:AAG19543.1; (AE005044) Vng1164c [Halobacterium sp. NRC-1]; E=9e-08 COG: slr0109; COG0668 Small-conductance mechanosensitive channel; E=9e-43 PA5022; COG3264 Small-conductance mechanosensitive channel; E=2e-05 TP0822; COG0668 Small-conductance mechanosensitive channel; E=3e-05 PFAM: PF00924; Uncharacterized protein family UPF00; E=2.1e-24 NP_870416.1 best DB hits: BLAST: embl:CAB83202.1; (AJ277117) membrane protein; E=4e-35 pir:H82825; transport protein XF0281 [imported] - Xylella fastidiosa; E=8e-26 swissprot:O34472; YRRI_BACSU HYPOTHETICAL 39.6 KDA PROTEIN IN; E=2e-13 COG: XF0281; COG0628 Predicted permease; E=7e-27 PFAM: PF01594; Domain of unknown function DUF20; E=0.3 NP_870418.1 PMID: 10484179 best DB hits: BLAST: ddbj:BAB05775.1; (AP001514) BH2056~unknown conserved protein in; E=1e-12 pir:T45542; hypothetical protein [imported] - Klebsiella pneumoniae; E=1e-08 gb:AAG10237.1; AF201699_2 (AF201699) phospholipid; E=6e-05 COG: BH2056; COG0030 Dimethyladenosine transferase (rRNA methylation); E=1e-13 Rv2622; COG0500 SAM-dependent methyltransferases; E=6e-04 NP_870420.1 best DB hits: PFAM: PF00339; Arrestin (or S-antigen), N-terminal; E=0.73 NP_870422.1 PMID: 3525165 PMID: 1633824 best DB hits: BLAST: prf:2102322C; energy-transducing nicotinamide nucleotide; E=5e-91 pir:T18520; transhydrogenase homolog 7B2 - Eimeria tenella -----; E=1e-88 pir:A81885; probable NAD(P)+ transhydrogenase (B-specific) (EC; E=1e-87 COG: NMB0978; COG1282 NAD/NADP transhydrogenase beta subunit; E=6e-88 PFAM: PF02233; NAD(P) transhydrogenase beta subunit; E=1.1e-206 NP_870423.1 PMID: 3525165 PMID: 1633824 best DB hits: BLAST: pir:G70618; probable pntAB protein - Mycobacterium tuberculosis; E=1e-09 pir:S77433; NAD(P)+ transhydrogenase (B-specific) (EC 1.6.1.1) alpha; E=2e-08 prf:2102322B; energy-transducing nicotinamide nucleotide; E=7e-07 COG: Rv0156; COG3288 NAD/NADP transhydrogenase alpha subunit; E=1e-10 NP_870424.1 PMID: 3525165 PMID: 1633824 best DB hits: BLAST: prf:2102322A; energy-transducing nicotinamide nucleotide; E=8e-76 pir:S77433; NAD(P)+ transhydrogenase (B-specific) (EC 1.6.1.1) alpha; E=9e-74 gb:AAK00588.1; (AY026033) pyridine nucleotide transhydrogenase; E=1e-72 COG: slr1239; COG3288 NAD/NADP transhydrogenase alpha subunit; E=9e-75 BH2329; COG0686 Alanine dehydrogenase; E=4e-26 PFAM: PF01266; D-amino acid oxidase; E=0.05 PF00070; Pyridine nucleotide-disulphide oxid; E=0.00011 PF01262; Alanine dehydrogenase/pyridine nucl; E=5.4e-89 NP_870426.1 PMID: 2583128 best DB hits: BLAST: pir:F75374; probable ketoacyl reductase - Deinococcus radiodurans; E=4e-49 gb:AAF18286.1; (AF088897) oxidoreductase; orf4 [Zymomonas; E=5e-25 swissprot:P37694; HETN_ANASP KETOACYL REDUCTASE HETN -----; E=2e-22 COG: DR1620; COG1028 Dehydrogenases with different specificities (related; E=4e-50 slr0315; COG1028 Dehydrogenases with different specificities; E=5e-21 PA1537; COG1028 Dehydrogenases with different specificities (related; E=8e-21 PFAM: PF00106; short chain dehydrogenase; E=3.2e-61 NP_870428.1 PMID: 9371463 best DB hits: BLAST: pir:D69230; hypothetical protein MTH974 - Methanobacterium; E=0.81 NP_870429.1 best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=3e-04 gb:AAG20856.1; (AE005154) Vng6189h [Halobacterium sp. NRC-1]; E=0.007 gb:AAF16758.1; AC010155_11 (AC010155) F3M18.23 [Arabidopsis; E=0.014 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=3e-05 PFAM: PF01011; PQQ enzyme repeat; E=0.0074 NP_870430.1 PMID: 10048488 best DB hits: BLAST: ddbj:BAB10826.1; (AB016892) receptor protein kinase-like protein; E=0.011 embl:CAB51834.1; (AJ243961) contains eukaryotic protein kinase; E=0.057 gb:AAG50525.1; AC084221_7 (AC084221) hypothetical protein; E=0.28 NP_870431.1 PMID: 1835671 PMID: 7768349 best DB hits: BLAST: swissprot:P54744; PKNB_MYCLE SERINETHREONINE-PROTEIN; E=2e-35 swissprot:P71584; PKNB_MYCTU SERINETHREONINE-PROTEIN; E=2e-35 pir:T36717; probable serinethreonine protein kinase - Streptomyces; E=1e-32 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=2e-36 PFAM: PF00069; Protein kinase domain; E=8.9e-53 NP_870433.1 PMID: 11936079 PMID: 3052291 best DB hits: BLAST: embl:CAB72200.1; (AL138851) RNA polymerase sigma factor; E=0.060 PFAM: PF00196; Bacterial regulatory proteins; E=0.59 NP_870435.1 PMID: 1856235 best DB hits: BLAST: ddbj:BAB06720.1; (AP001517) maltose transacetylase (maltose; E=3e-44 swissprot:P37515; MAA_BACSU PROBABLE MALTOSE O-ACETYLTRANSFERASE; E=1e-43 swissprot:P77791; MAA_ECOLI MALTOSE O-ACETYLTRANSFERASE (MALTOSE; E=3e-40 COG: BH3001; COG0110 Acetyltransferases (the isoleucine patch; E=3e-45 ylaD; COG0110 Acetyltransferases (the isoleucine patch superfamily); E=3e-41 YJL218w; COG0110 Acetyltransferases (the isoleucine patch; E=3e-34 PFAM: PF00132; Bacterial transferase hexapeptide (f; E=0.62 NP_870436.1 best DB hits: BLAST: pir:A70081; conserved hypothetical protein yxkH - Bacillus subtilis; E=0.24 gb:AAK00156.1; AF222753_11 (AF222753) nodulation; E=0.50 pir:T50960; related to nodulation protein nodB [imported] -; E=0.69 PFAM: PF01522; Polysaccharide deacetylase; E=0.0074 NP_870442.1 PMID: 10567266 best DB hits: BLAST: pir:F75410; conserved hypothetical protein - Deinococcus radiodurans; E=0.084 NP_870444.1 PMID: 7910580 best DB hits: BLAST: swissprot:P50428; ARSA_MOUSE ARYLSULFATASE A PRECURSOR (ASA); E=7e-41 embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=1e-40 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=1e-40 COG: aslA; COG3119 Arylsulfatase A and related enzymes; E=3e-26 PFAM: PF00884; Sulfatase; E=4.1e-39 NP_870445.1 PMID: 11406410 best DB hits: BLAST: gb:AAA98756.1; (L29642) sensor kinase [Pseudomonas fluorescens]; E=2e-45 pir:F83153; probable two-component sensor PA3946 [imported] -; E=3e-36 pir:E83265; probable two-component sensor PA3044 [imported] -; E=2e-35 COG: PA3044; COG0642 Sensory transduction histidine kinases; E=2e-36 PFAM: PF01590; GAF domain; E=3.2e-20 PF00989; PAS domain; E=1.2e-07 PF00512; His Kinase A (phosphoacceptor) d; E=4.8e-16 NP_870446.1 PMID: 8639691 best DB hits: BLAST: swissprot:Q63424; PET2_RAT OLIGOPEPTIDE TRANSPORTER, KIDNEY; E=4e-47 prf:2113198A; Hpeptide cotransporter [Homo sapiens]; E=7e-47 gb:AAF66614.1; AF142441_1 (AF142441) H+oligopeptide symporter; E=1e-46 COG: YKR093w; COG3104 Dipeptide/tripeptide permease; E=2e-24 PFAM: PF00854; POT family; E=6.4e-42 NP_870451.1 best DB hits: BLAST: gb:AAB90905.1; (AE001082) conserved hypothetical protein; E=4e-06 embl:CAB59505.1; (AL132648) hypothetical protein SCI41.35c; E=6e-05 pir:A69209; conserved hypothetical protein MTH816 - Methanobacterium; E=0.001 COG: AF0332_1; COG1994 Zn-dependent proteases; E=6e-06 NP_870452.1 PMID: 8370677 best DB hits: BLAST: pir:B75267; prolyl endopeptidase - Deinococcus radiodurans (strain; E=0.0 gb:AAD34991.1; (AF143951) prolyl endopeptidase [Aeromonas; E=1e-173 gb:AAF02211.1; (AF065429) prolyl endopeptidase [Aeromonas; E=1e-173 COG: DR2503; COG1505 Serine proteases of the peptidase S9A; E=0.0 PA1304; COG1770 Protease II (serine protease PtrB); E=7e-45 NMB1877; COG1505 Serine proteases of the peptidase S9A; E=2e-38 PFAM: PF02897; Prolyl oligopeptidase, N-termi; E=2.7e-149 PF00326; Prolyl oligopeptidase; E=2.6e-40 NP_870456.1 PMID: 1368718 best DB hits: BLAST: swissprot:P76041; SUCP_ECOLI SUCROSE PHOSPHORYLASE; E=1e-123 pir:H64879; probable membrane protein b1309 - Escherichia coli; E=1e-123 ddbj:BAA14878.1; (D90768) Sucrose phosphorylase (EC 2.4.1.7); E=1e-121 COG: ycjM; COG0366 Glycosidases; E=1e-124 PFAM: PF00128; Alpha amylase, catalytic domain; E=0.0025 NP_870457.1 best DB hits: BLAST: pir:G72278; hypothetical protein - Thermotoga maritima (strain MSB8); E=5e-43 ddbj:BAA25653.1; (AB005901) deduced glucosyltransferase; E=1e-07 pir:F64500; probable hexosyltransferase (EC 2.4.1.-) MJ1607 -; E=7e-05 COG: TM1230; COG0438 Predicted glycosyltransferases; E=5e-44 PFAM: PF02843; Phosphoribosylglycinamide syn; E=0.45 PF00534; Glycosyl transferases group 1; E=0.018 NP_870458.1 PMID: 7826004 best DB hits: BLAST: pir:G75522; hydrolase, CbbYCbbZ/GpH/YieH family - Deinococcus; E=0.045 swissprot:Q94915; REG2_DROME RHYTHMICALLY EXPRESSED GENE 2 PROTEIN; E=0.14 pir:E75169; hypothetical protein PAB2019 - Pyrococcus abyssi (strain; E=0.15 COG: DR0414; COG1011 Predicted hydrolases of the HAD superfamily; E=0.004 PFAM: PF00702; haloacid dehalogenase-like hydrolas; E=2e-07 NP_870459.1 PMID: 10497016 PMID: 11932238 best DB hits: BLAST: pir:E82044; fxsA protein VC2696 [imported] - Vibrio cholerae (group; E=0.013 ddbj:BAB06881.1; (AP001517) BH3162~unknown conserved protein; E=0.14 pir:C70004; conserved hypothetical protein ytzA - Bacillus subtilis; E=0.84 COG: VC2696; COG3030 Uncharacterized ACR; E=0.001 NP_870460.1 PMID: 1646017 best DB hits: BLAST: embl:CAA57910.1; (X82563) c-type cytochrome [Synechocystis sp.]; E=0.77 PFAM: PF00034; Cytochrome c; E=5.6e-05 NP_870461.1 PMID: 2651416 best DB hits: BLAST: swissprot:P35539; FLIN_ERWCA FLAGELLAR MOTOR SWITCH PROTEIN FLIN; E=2e-04 swissprot:P15070; FLIN_ECOLI FLAGELLAR MOTOR SWITCH PROTEIN FLIN; E=5e-04 swissprot:P26419; FLIN_SALTY FLAGELLAR MOTOR SWITCH PROTEIN FLIN; E=5e-04 COG: TM0680a; COG1886 Flagellar motor switch/type III secretory pathway; E=2e-06 PFAM: PF01052; Surface presentation of antigens (SP; E=2.3e-07 NP_870463.1 PMID: 3112519 PMID: 2117666 best DB hits: BLAST: pir:A27286; levanase (EC 3.2.1.65) precursor - Bacillus subtilis; E=3e-54 swissprot:P05656; SACC_BACSU LEVANASE PRECURSOR; E=3e-54 prf:1404371A; levanase [Bacillus subtilis]; E=3e-54 COG: BS_sacC; COG1621 Beta-fructosidases (levanase/invertase); E=3e-55 PFAM: PF00251; Glycosyl hydrolases family 32; E=4.6e-10 PF02012; BNR repeat; E=0.81 PF00251; Glycosyl hydrolases family 32; E=3.1e-15 NP_870464.1 PMID: 1850730 best DB hits: BLAST: swissprot:Q55480; YZ37_SYNY3 HYPOTHETICAL SUGAR KINASE SLR0537; E=5e-55 gb:AAG10458.1; AF279106_20 (AF279106) predicted ribokinase; E=1e-42 gb:AAK00437.1; AC060755_7 (AC060755) adenosine kinase; E=1e-40 COG: slr0537; COG0524 Sugar kinases, ribokinase; E=4e-56 PFAM: PF00294; pfkB family carbohydrate kinase; E=2.7e-54 NP_870465.1 best DB hits: BLAST: pir:S74867; hypothetical protein sll1159 - Synechocystis sp. (strain; E=2e-23 pir:T36936; hypothetical protein SCJ1.03c - Streptomyces coelicolor; E=1e-17 pir:E72332; thioredoxin peroxidase (EC 1.11.1.-) TM0780 [similarity]; E=1e-05 COG: sll1159; COG1225 Peroxiredoxins; E=2e-24 DR2242; COG0450 Thiol - alkyl hydroperoxide reductases; E=4e-04 bcp; COG1225 Peroxiredoxins; E=4e-04 NP_870466.1 PMID: 8419285 best DB hits: BLAST: gb:AAK05218.1; AE006344_7 (AE006344) ATP-dependent helicase PcrA; E=1e-131 swissprot:Q53727; PCRA_STAAU ATP-DEPENDENT DNA HELICASE PCRA; E=1e-127 swissprot:Q9S3Q0; PCRA_LEUCI ATP-DEPENDENT DNA HELICASE PCRA; E=1e-127 COG: BS_yerF; COG0210 Superfamily I DNA and RNA helicases; E=1e-127 PFAM: PF00580; UvrD/REP helicase; E=2.4e-177 NP_870467.1 best DB hits: PFAM: PF00428; 60s Acidic ribosomal protein; E=0.77 NP_870469.1 PMID: 7889934 best DB hits: BLAST: ddbj:BAB03982.1; (AP001507) RNA polymerase ECF-type sigma factor; E=4e-15 swissprot:Q45585; SIGW_BACSU RNA POLYMERASE SIGMA FACTOR SIGW; E=3e-13 swissprot:Q06198; RPSH_PSEAE RNA POLYMERASE SIGMA-H FACTOR; E=1e-11 COG: BH0263; COG1595 DNA-directed RNA polymerase specialized sigma; E=4e-16 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=5.4e-10 PF00140; Sigma-70 factor; E=0.53 NP_870470.1 best DB hits: PFAM: PF02728; Copper amine oxidase, N3 doma; E=0.86 NP_870471.1 PMID: 3122846 best DB hits: BLAST: swissprot:P37468; KSGA_BACSU DIMETHYLADENOSINE TRANSFERASE; E=5e-39 ddbj:BAB03776.1; (AP001507) dimethyladenosine transferase; E=3e-38 gb:AAK04788.1; AE006302_6 (AE006302) kasugamycin; E=8e-38 COG: BS_ksgA; COG0030 Dimethyladenosine transferase (rRNA methylation); E=4e-40 PFAM: PF00398; Ribosomal RNA adenine dimethylases; E=4.9e-50 NP_870472.2 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine NP_870473.1 PMID: 8021172 best DB hits: BLAST: ddbj:BAB07275.1; (AP001519) enolase (2-phosphoglycerate; E=1e-144 pir:A41835; phosphopyruvate hydratase (EC 4.2.1.11) - Bacillus; E=1e-139 swissprot:P37869; ENO_BACSU ENOLASE (2-PHOSPHOGLYCERATE; E=1e-139 COG: BH3556; COG0148 Enolase; E=1e-145 PFAM: PF00113; Enol-ase; E=7e-245 NP_870479.1 best DB hits: BLAST: gb:AAD45539.1; U70376_1 (U70376) InsA [Streptomyces netropsis]; E=5e-33 gb:AAG60893.1; AF322013_12 (AF322013) ID460 [Bradyrhizobium; E=8e-33 ddbj:BAA19966.1; (D63923) transposase [Acetobacter pasteurianus]; E=1e-26 NP_870483.1 best DB hits: BLAST: gb:AAD05531.1; (AF083240) c-type cytochrome precursor [Shewanella; E=0.013 NP_870487.1 best DB hits: BLAST: pir:G70414; conserved hypothetical protein aq_1327 - Aquifex; E=1e-08 pir:G72297; conserved hypothetical protein - Thermotoga maritima; E=5e-08 pir:T34718; probable integral membrane protein - Streptomyces; E=9e-07 COG: aq_1327; COG0705 Uncharacterized membrane protein (homolog of; E=1e-09 PFAM: PF01694; Rhomboid family; E=3.1e-12 NP_870490.1 PMID: 3311747 best DB hits: BLAST: gb:AAG57155.1; AE005436_2 (AE005436) nucleoside permease; E=5e-53 swissprot:P76417; YEGT_ECOLI NUCLEOSIDE TRANSPORTER YEGT; E=8e-53 pir:C65082; nucleoside-transporting protein nupG - Escherichia coli; E=6e-30 COG: yegT; COG0477 Permeases of the major facilitator superfamily; E=7e-54 NP_870493.1 PMID: 10216867 best DB hits: BLAST: gb:AAD30859.1; AF116251_2 (AF116251) BatB [Bacteroides fragilis]; E=0.007 NP_870495.1 PMID: 10484179 best DB hits: BLAST: gb:AAG18715.1; (AE004976) Vng0080h [Halobacterium sp. NRC-1]; E=2e-04 ddbj:BAB07426.1; (AP001519) acetobutylicum phosphotransbutyrylase; E=0.005 NP_870497.1 PMID: 1567863 best DB hits: BLAST: pir:S20974; hypothetical protein 178 - Escherichia coli; E=4e-34 swissprot:P30134; YFHC_ECOLI HYPOTHETICAL 20.0 KD PROTEIN IN; E=4e-34 gb:AAG57673.1; AE005486_4 (AE005486) deaminase; E=4e-34 COG: yfhC; COG0590 Cytosine/adenosine deaminases; E=4e-35 PFAM: PF00383; Cytidine and deoxycytidylate de; E=1.7e-37 NP_870498.1 PMID: 2065652 PMID: 1905979 best DB hits: BLAST: gb:AAF82144.1; AC034256_8 (AC034256) Contains similarity to F-box; E=3e-15 gb:AAG17034.1; AF187980_1 (AF187980) Partner of Paired [Drosophila; E=8e-09 embl:CAB95333.1; (AL359782) possible adenylate cyclase; E=2e-06 NP_870499.1 PMID: 12004073 NP_870500.1 PMID: 1550672 best DB hits: BLAST: pir:A82682; ion transporter XF1426 [imported] - Xylella fastidiosa; E=1e-48 pir:E75470; probable ion transporter - Deinococcus radiodurans; E=5e-42 pir:B83459; probable potassium channel PA1496 [imported] -; E=1e-36 COG: XF1426; COG1226 Kef-type K+ transport systems, predicted NAD-binding; E=1e-49 APE0955; COG1226 Kef-type K+ transport systems, predicted; E=7e-09 BH3340; COG1226 Kef-type K+ transport systems, predicted NAD-binding; E=4e-05 PFAM: PF01145; SPFH domain / Band 7 family; E=0.42 PF00520; Ion transport protein; E=5.1e-21 NP_870503.1 PMID: 9537320 best DB hits: BLAST: pir:B70374; conserved hypothetical protein aq_854 - Aquifex aeolicus; E=0.20 pir:E69078; conserved hypothetical protein MTH1585 -; E=0.34 ddbj:BAB05388.1; (AP001512) BH1669~unknown conserved protein; E=0.58 PFAM: PF00515; TPR Domain; E=0.15 NP_870505.1 PMID: [EscherichiacoliO157:H7] best DB hits: BLAST: gb:AAF32278.1; (AF211192) SULF1 [Drosophila melanogaster]; E=7e-13 gb:AAG58881.1; AE005599_13 (AE005599) sulfatase; E=1e-12 gb:AAF55296.1; (AE003712) Sulf1 gene product [Drosophila; E=8e-12 COG: PA0031; COG3119 Arylsulfatase A and related enzymes; E=3e-12 PFAM: PF00884; Sulfatase; E=5.6e-14 NP_870506.1 PMID: 7910580 best DB hits: BLAST: swissprot:P50428; ARSA_MOUSE ARYLSULFATASE A PRECURSOR (ASA); E=5e-36 gb:AAC27821.1; (AF013158) arylsulfatase [Heliocidaris; E=7e-36 embl:CAA34667.1; (X16679) arylsulfatase [Hemicentrotus; E=1e-35 COG: aslA; COG3119 Arylsulfatase A and related enzymes; E=8e-28 PAB0793; COG2194 Predicted membrane-associated, metal-dependent; E=0.001 VNG1337C; COG3119 Arylsulfatase A and related enzymes; E=0.004 PFAM: PF00884; Sulfatase; E=2.2e-39 NP_870507.1 PMID: 9083067 best DB hits: BLAST: gb:AAF55179.1; (AE003708) CG5038 gene product [Drosophila; E=5e-28 swissprot:P56558; OGT1_RAT UDP-N-ACETYLGLUCOSAMINE--PEPTIDE; E=3e-27 gb:AAD38597.1; AF145622_1 (AF145622) BcDNA.GH04245 [Drosophila; E=2e-25 COG: MTH83; COG0457 TPR-repeat-containing proteins; E=2e-20 PFAM: PF00515; TPR Domain; E=6.4e-07 NP_870508.1 PMID: 7743991 best DB hits: BLAST: pir:E69992; conserved hypothetical protein ytgD - Bacillus subtilis; E=3e-41 ddbj:BAB05109.1; (AP001511) BH1390~unknown conserved protein in; E=2e-32 gb:AAD56938.1; AF180520_3 (AF180520) integral membrane protein; E=3e-28 COG: BS_ytgD; COG1108 ABC-type Mn2+/Zn2+ transport systems, permease; E=3e-42 Rv2788; COG1321 Mn-dependent transcriptional regulator; E=3e-10 BH1395; COG1108 ABC-type Mn2+/Zn2+ transport systems, permease; E=5e-10 PFAM: PF00950; ABC 3 transport family; E=1.1e-17 PF02742; Iron dependent repressor, metal; E=2.9e-10 NP_870509.1 PMID: 7743991 best DB hits: BLAST: pir:D69992; ABC transporter (membrane protein) homolog ytgC -; E=8e-45 pir:B71357; probable ABC transporter, permease (troC) -; E=5e-22 pir:A72089; integral membrane protein - Chlamydophila pneumoniae; E=4e-21 COG: BS_ytgC; COG1108 ABC-type Mn2+/Zn2+ transport systems, permease; E=8e-46 CPn0347_2; COG1321 Mn-dependent transcriptional regulator; E=2e-07 TM0125; COG1108 ABC-type Mn2+/Zn2+ transport systems, permease; E=3e-07 PFAM: PF00950; ABC 3 transport family; E=1.6e-72 PF02742; Iron dependent repressor, metal; E=1.6e-07 NP_870510.1 PMID: 7743991 best DB hits: BLAST: pir:C69992; ABC transporter (ATP-binding protein) homolog ytgB -; E=3e-73 pir:A71357; probable ABC transporter ATP-binding protein (troB) -; E=1e-70 pir:T45470; ATP-binding ABC transport protein [imported] -; E=9e-58 COG: BS_ytgB; COG1121 ABC-type Mn/Zn transport systems, ATPase component; E=3e-74 BS_yfmF; COG1120 ABC-type cobalamin/Fe3+-siderophores transport; E=8e-24 PH1653; COG1121 ABC-type Mn/Zn transport systems, ATPase component; E=5e-23 PFAM: PF02463; SMC domain N terminal domain; E=0.17 PF00005; ABC transporter; E=7.9e-50 NP_870512.1 PMID: 7743991 best DB hits: BLAST: pir:B69992; ABC transporter (membrane protein) homolog ytgA -; E=7e-66 pdb:1TOA; A Chain A, Periplasmic Zinc Binding Protein Troa From; E=3e-50 gb:AAA92353.1; (U16363) Tromp1 [Treponema pallidum]; E=3e-50 COG: BS_ytgA; COG0803 ABC-type Mn/Zn transport system, periplasmic; E=7e-67 PFAM: PF01297; Periplasmic solute binding prot; E=3.6e-103 NP_870513.1 PMID: 9694840 best DB hits: BLAST: pir:G69041; mutator MutT protein - Methanobacterium; E=3e-07 swissprot:Q58549; ADPP_METJA ADP-RIBOSE PYROPHOSPHATASE; E=9e-07 embl:CAC12694.1; (AJ272115) hypothetical protein [Thauera; E=2e-06 COG: MTH1315; COG1051 ADP-ribose pyrophosphatase; E=3e-08 BH1893; COG0494 NTP pyrophosphohydrolases including oxidative damage; E=3e-07 VC0331; COG2816 NTP pyrophosphohydrolases containing a Zn-finger,; E=3e-06 PFAM: PF01165; Ribosomal protein S21; E=0.52 PF00293; MutT-like domain; E=1e-25 NP_870516.1 PMID: 2017365 best DB hits: BLAST: pir:T36663; protein kinase, transmembrane - Streptomyces coelicolor; E=8e-28 pir:B81173; thymidylate kinase NMB0670 [imported] - Neisseria; E=1e-27 pir:H81932; probable dTMP kinase (EC 2.7.4.9) NMA0869 [imported] -; E=3e-27 COG: NMB0670; COG0125 Thymidylate kinase; E=1e-28 PFAM: PF02223; Thymidylate kinase; E=1.3e-62 NP_870524.1 PMID: 8132648 best DB hits: BLAST: pir:B53522; 20k cyclophilin - Toxoplasma gondii (fragment) -----; E=0.056 NP_870526.1 PMID: 8300537 best DB hits: BLAST: pir:D82385; mannitol operon repressor VCA1047 [imported] - Vibrio; E=6e-04 gb:AAD45387.1; AF166095_3 (AF166095) mtl operon repressor; E=0.12 swissprot:P36563; MTLR_ECOLI MANNITOL OPERON REPRESSOR (MANNITOL; E=0.28 NP_870528.1 best DB hits: PFAM: PF02205; WH2 motif; E=0.86 NP_870529.1 PMID: 10952301 best DB hits: BLAST: pir:C82490; probable potassium channel protein VCA0194 [imported] -; E=0.039 COG: VCA0194; COG1226 Kef-type K+ transport systems, predicted; E=0.004 NP_870530.1 best DB hits: PFAM: PF00520; Ion transport protein; E=1.8e-05 PF01578; Cytochrome C assembly protein; E=0.81 NP_870536.1 PMID: 9297088 best DB hits: BLAST: ddbj:BAB05275.1; (AP001512) GTP cyclohydrolase II 3,; E=1e-106 swissprot:P51695; GCH2_BACAM RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBA; E=1e-103 swissprot:P17620; GCH2_BACSU RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBA; E=1e-103 COG: BH1556_2; COG0807 GTP cyclohydrolase II; E=7e-51 BH1556_1; COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase; E=2e-48 ribA; COG0807 GTP cyclohydrolase II; E=2e-48 PFAM: PF00926; 3,4-dihydroxy-2-butanone 4-ph; E=5.7e-83 PF00925; GTP cyclohydrolase II; E=2.5e-89 NP_870537.1 PMID: 1907455 best DB hits: BLAST: pir:B75555; probable lipaseesterase - Deinococcus radiodurans; E=1e-19 pdb:1EVQ; A Chain A, The Crystal Structure Of The Thermophilic; E=6e-12 pir:H70731; probable esterase - Mycobacterium tuberculosis (strain; E=5e-11 COG: DR0133; COG0657 Acetyl esterase; E=1e-20 XF2260; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; E=1e-04 aes; COG0657 Acetyl esterase; E=5e-04 NP_870538.1 best DB hits: PFAM: PF00892; Integral membrane protein DUF6; E=0.67 NP_870540.1 PMID: 7768349 best DB hits: BLAST: pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=4e-44 pir:T36717; probable serinethreonine protein kinase - Streptomyces; E=4e-40 swissprot:P71584; PKNB_MYCTU SERINETHREONINE-PROTEIN; E=2e-39 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=4e-45 PFAM: PF00069; Protein kinase domain; E=1.7e-55 NP_870542.1 best DB hits: PFAM: PF02537; CrcB-like protein; E=0.22 NP_870544.1 PMID: 1828465 best DB hits: BLAST: ddbj:BAB06171.1; (AP001515) BH2452~unknown conserved protein; E=0.067 pir:T14405; small GTP-binding protein rab-1 - turnip ----- gb:; E=0.076 swissprot:P23451; FLIK_BACSU PROBABLE FLAGELLAR HOOK-LENGTH; E=0.082 COG: BH2452; COG3144 Flagellar hook-length control protein; E=0.006 NP_870545.1 best DB hits: PFAM: PF02895; Signal transducing histidine kin; E=0.61 NP_870546.1 PMID: 1904439 best DB hits: BLAST: swissprot:P20487; FLIJ_BACSU FLAGELLAR FLIJ PROTEIN (CHEMOTAXIS; E=0.012 COG: BS_fliJ; COG2882 Flagellar biosynthesis chaperone; E=0.001 NP_870547.1 PMID: 1828465 best DB hits: BLAST: pir:D72404; flagellum-specific ATP synthase - Thermotoga maritima; E=1e-108 ddbj:BAB06174.1; (AP001515) flagellar-specific ATP synthase; E=1e-106 swissprot:P23445; FLII_BACSU FLAGELLUM-SPECIFIC ATP SYNTHASE; E=1e-103 COG: TM0218; COG1157 Flagellar biosynthesis/type III secretory pathway; E=1e-109 atpD; COG0055 F0F1-type ATP synthase beta subunit; E=2e-37 PFAM: PF00005; ABC transporter; E=0.024 PF00006; ATP synthase alpha/beta family,; E=4e-131 NP_870548.1 best DB hits: PFAM: PF02361; Cobalt transport protein; E=0.17 NP_870549.1 PMID: 10440379 best DB hits: BLAST: swissprot:Q9WY63; FLIG_THEMA FLAGELLAR MOTOR SWITCH PROTEIN FLIG; E=7e-08 pir:G71328; probable flagellar motor switch protein (fliG-2) -; E=6e-07 gb:AAF35852.1; AF220006_1 (AF220006) lateral flagellar motor; E=2e-06 COG: TM0220; COG1536 Flagellar motor switch protein; E=7e-09 NP_870551.1 PMID: 9266669 best DB hits: BLAST: ddbj:BAB05255.1; (AP001512) anti-sigma F factor antagonist (stage; E=0.003 pir:S75220; hypothetical protein slr1912 - Synechocystis sp. (strain; E=0.024 COG: BH1536; COG1366 Anti-anti-sigma regulatory factor (antagonist of; E=3e-04 PFAM: PF01740; STAS domain; E=4.9e-06 NP_870552.1 PMID: 1528845 best DB hits: BLAST: pir:T30898; receptor-like histidine kinase - Rhodococcus erythropolis; E=6e-08 pir:T28694; hypothetical protein - Streptomyces coelicolor -----; E=1e-07 pir:T28655; receptor-like histidine kinase BpdS - Rhodococcus sp; E=2e-07 COG: narQ; COG0642 Sensory transduction histidine kinases; E=2e-08 PFAM: PF02518; Histidine kinase-, DNA gyrase B-, p; E=1.9e-05 NP_870553.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive NP_870554.1 PMID: 11016950 best DB hits: BLAST: gb:AAG18715.1; (AE004976) Vng0080h [Halobacterium sp. NRC-1]; E=0.018 NP_870555.1 PMID: 10368149 best DB hits: BLAST: gb:AAD24206.1; AF049342_4 (AF049342) flagellar hook protein FlgE; E=8e-22 gb:AAA61738.1; (U19712) flagellar hook polypeptide [Borrelia; E=1e-21 gb:AAA91361.1; (U12870) flagellar distal rod protein [Borrelia; E=3e-21 COG: BB0283; COG1749 Flagellar basal body and hook proteins; E=5e-22 PFAM: PF00460; Flagella basal body rod protein; E=3.7e-10 NP_870556.1 PMID: 8049271 best DB hits: BLAST: gb:AAG25963.1; AF300968_5 (AF300968) FlgD [Sinorhizobium meliloti]; E=2e-05 gb:AAF14369.1; AF133240_3 (AF133240) flagellar scaffolding protein; E=3e-05 gb:AAA97475.1; (U51896) LfgD [Vibrio parahaemolyticus]; E=4e-05 COG: PA1079; COG1843 Flagellar hook capping protein; E=8e-06 NP_870560.1 best DB hits: PFAM: PF02163; Sterol-regulatory element bindi; E=0.78 PF00364; Biotin-requiring enzyme; E=0.21 PF00358; phosphoenolpyruvate-dependent s; E=0.42 NP_870561.1 best DB hits: BLAST: gb:AAG51290.1; AC027035_13 (AC027035) unknown protein [Arabidopsis; E=3e-08 gb:AAG51209.1; AC051630_6 (AC051630) peptide chain release factor,; E=1e-07 gb:AAF53262.1; (AE003639) CG5705 gene product [Drosophila; E=0.20 NP_870562.1 PMID: 10382966 best DB hits: BLAST: pir:G70414; conserved hypothetical protein aq_1327 - Aquifex; E=1e-30 pir:G72297; conserved hypothetical protein - Thermotoga maritima; E=1e-28 pir:T34718; probable integral membrane protein - Streptomyces; E=2e-26 COG: aq_1327; COG0705 Uncharacterized membrane protein (homolog of; E=1e-31 PFAM: PF01694; Rhomboid family; E=3e-30 NP_870564.1 PMID: 9634230 best DB hits: BLAST: swissprot:Q50644; YP77_MYCTU HYPOTHETICAL 57.3 KDA PROTEIN RV2577; E=9e-08 gb:AAF47971.1; (AE003484) CG1637 gene product [alt 1] [Drosophila; E=9e-06 gb:AAF47969.1; (AE003484) CG1637 gene product [alt 3] [Drosophila; E=6e-04 PFAM: PF02908; Purple acid phosphatase, N-ter; E=0.013 PF02227; Purple acid phosphatase; E=8.7e-08 NP_870569.1 best DB hits: BLAST: swissprot:Q10801; DIPZ_MYCTU DIPZ PROTEIN ----- pir: E70923; E=3e-04 pir:E69891; cytochrome c biogenesis protein CycX homolog homolog; E=3e-04 pir:F75549; cytochrome c biogenesis protein CycX homolog DR0189; E=8e-04 COG: BS_yneN; COG0526 Thiol-disulfide isomerase and thioredoxins; E=3e-05 PFAM: PF00085; Thioredoxin; E=0.13 NP_870571.1 best DB hits: BLAST: gb:AAB69633.1; (U82513) random slug cDNA25 protein [Dictyostelium; E=0.012 NP_870572.1 best DB hits: BLAST: ddbj:BAB05490.1; (AP001513) BH1771~unknown conserved protein; E=3e-96 swissprot:P50840; YPSC_BACSU HYPOTHETICAL 43.5 KD PROTEIN IN; E=8e-88 gb:AAK05749.1; AE006395_9 (AE006395) HYPOTHETICAL PROTEIN; E=8e-72 COG: BH1771; COG0116 Predicted N6-adenine-specific DNA methylases; E=3e-97 PFAM: PF01170; Uncharacterized protein family UP; E=5.4e-113 NP_870574.1 PMID: 7929259 best DB hits: BLAST: ddbj:BAA03434.1; (D14581) fatty-acid desaturase [Anabaena; E=3e-44 gb:AAB61353.1; (U36390) delta-9 desaturase [Synechococcus sp. PCC; E=2e-42 gb:AAD00699.1; (U90417) delta 9 acyl-lipid fatty acid desaturase; E=4e-42 COG: sll0541; COG1398 Fatty-acid desaturase; E=7e-43 PFAM: PF01069; Fatty acid desaturase; E=1e-19 NP_870576.1 PMID: 8843436 best DB hits: BLAST: embl:CAB56131.1; (AL117669) hypothetical protein [Streptomyces; E=1e-22 pir:T35709; hypothetical protein SC7H1.14 SC7H1.14 - Streptomyces; E=6e-16 pir:S13421; polymeric globin alpha - brine shrimp (fragment) -----; E=0.087 NP_870579.1 PMID: 2668691 PMID: 2190615 best DB hits: BLAST: pir:C70845; probable nagA protein - Mycobacterium tuberculosis; E=2e-33 gb:AAK05433.1; AE006366_2 (AE006366); E=1e-32 gb:AAG58267.1; AE005542_9 (AE005542) ; E=2e-32 COG: Rv3332; COG1820 N-acetylglucosamine-6-phosphate deacetylase; E=2e-34 Ta1060; COG0402 Cytosine deaminase and related metal-dependent; E=0.001 yicP; COG1001 Adenine deaminase; E=0.002 PFAM: PF01979; Adenine deaminase; E=0.071 PF01685; Chlorohydrolase; E=0.002 PF01979; Adenine deaminase; E=8.9e-07 NP_870580.1 PMID: 2001402 best DB hits: BLAST: swissprot:P28036; DHET_ACEPO ALCOHOL DEHYDROGENASE [ACCEPTOR]; E=0.003 gb:AAB89850.1; (AE001008) conserved hypothetical protein; E=0.003 swissprot:Q44002; DHET_ACEEU ALCOHOL DEHYDROGENASE [ACCEPTOR]; E=0.004 COG: AF1399; COG1520 Uncharacterized proteins of WD40-like repeat family; E=3e-04 PFAM: PF01011; PQQ enzyme repeat; E=5.5e-05 NP_870581.1 best DB hits: BLAST: gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=1e-09 swissprot:O05389; YRBE_BACSU HYPOTHETICAL 37.8 KDA PROTEIN IN; E=6e-09 pir:D72381; dehydrogenase - Thermotoga maritima (strain MSB8); E=3e-07 COG: BS_yrbE; COG0673 Predicted dehydrogenases and related proteins; E=5e-10 PFAM: PF01408; Oxidoreductase, NAD-bindi; E=3.4e-16 NP_870582.1 best DB hits: PFAM: PF00884; Sulfatase; E=0.63 NP_870583.1 best DB hits: PFAM: PF02704; Gibberellin regulated protein; E=0.082 PF00034; Cytochrome c; E=0.79 NP_870585.1 PMID: 10567266 best DB hits: BLAST: pir:E75266; GGDEF family protein - Deinococcus radiodurans (strain; E=2e-27 gb:AAA87378.1; (L42554) pleD gene product [Caulobacter; E=2e-25 gb:AAD28578.1; AF121341_2 (AF121341) response regulator; E=3e-25 COG: DR2498; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=2e-28 TM1594; COG2199 Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF); E=7e-21 yddV_2; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=9e-21 PFAM: PF00897; Orbivirus inner capsid protein VP7; E=0.89 PF00498; FHA domain; E=1.3e-19 PF00990; GGDEF domain; E=3.2e-60 NP_870586.1 PMID: 7768349 best DB hits: BLAST: pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=1e-32 gb:AAF73695.1; (AE002226) serinethreonine-protein kinase; E=3e-32 embl:CAA10713.1; (AJ132604) hypothetical protein [Lactococcus; E=1e-31 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=1e-33 PFAM: PF00069; Protein kinase domain; E=2.1e-33 PF00515; TPR Domain; E=0.017 NP_870594.1 PMID: 11157937 best DB hits: BLAST: swissprot:Q46638; AMSK_ERWAM AMYLOVORAN BIOSYNTHESIS PROTEIN AMSK; E=9e-14 ddbj:BAB07095.1; (AP001518) lipopolysaccharide biosynthesis; E=1e-13 pir:A82265; probable polysaccharide biosynthesis protein VC0925; E=3e-13 COG: BH3376; COG0438 Predicted glycosyltransferases; E=1e-14 PFAM: PF00534; Glycosyl transferases group 1; E=1.3e-32 NP_870596.1 PMID: 3547331 best DB hits: BLAST: ddbj:BAB06776.1; (AP001517) 3-isopropylmalate dehydrogenase; E=1e-102 swissprot:P05645; LEU3_BACSU 3-ISOPROPYLMALATE DEHYDROGENASE; E=1e-101 pir:A26522; 3-isopropylmalate dehydrogenase (EC 1.1.1.85) - Bacillus; E=1e-100 COG: BH3057; COG0473 Isocitrate/isopropylmalate dehydrogenase; E=1e-103 PFAM: PF00180; Isocitrate and isopropylmalate dehyd; E=5.4e-201 NP_870597.1 PMID: 2995358 PMID: 2995359 best DB hits: BLAST: gb:AAK04086.1; (AE006236) unknown [Pasteurella multocida]; E=7e-53 pir:A83329; probable phosphatidate cytidylyltransferase PA2536; E=2e-51 pir:H82138; probable phosphatidate cytidylyltransferase VC1936; E=2e-32 COG: PA2536; COG0575 CDP-diglyceride synthetase; E=2e-52 PFAM: PF01148; Phosphatidate cytidylyltransf; E=5.5e-08 NP_870598.1 PMID: 10567266 best DB hits: BLAST: pir:A75455; hypothetical protein - Deinococcus radiodurans (strain; E=2e-16 ddbj:BAB13746.1; (AB032601) azoreductase [Bacillus sp. OY1-2]; E=2e-05 gb:AAD13563.1; (AF080235) reductase homolog [Streptomyces; E=5e-04 COG: BH2050; COG0431 Predicted flavoprotein; E=6e-05 NP_870599.1 PMID: 8905231 best DB hits: BLAST: pir:S74482; UDP-N-acetyl-D-mannosaminuronic acid transferase rffM-1; E=6e-44 pir:C82265; UDP-N-acetyl-D-mannosamine transferase VC0927 [imported]; E=2e-20 gb:AAC78668.1; (AF094575) N-acetyl-mannosamine; E=1e-15 COG: slr1118; COG1922 Teichoic acid biosynthesis proteins; E=5e-45 NP_870600.1 best DB hits: BLAST: pir:T35588; probable secreted protein - Streptomyces coelicolor; E=0.24 ddbj:BAB05636.1; (AP001513) chitooligosaccharide deacetylase; E=0.63 PFAM: PF01522; Polysaccharide deacetylase; E=0.00027 NP_870601.1 best DB hits: BLAST: gb:AAF14309.1; (U45308) SqdX [Synechococcus sp. PCC 7942]; E=0.009 pir:T34839; probable hexosyltransferase (EC 2.4.1.-) SC2G5.06; E=0.031 pir:T35514; probable glycosyl transferase - Streptomyces coelicolor; E=0.072 NP_870602.1 PMID: 99184998 best DB hits: BLAST: gb:AAD24451.1; AF118389_8 (AF118389) Cps2E [Streptococcus suis]; E=4e-34 pir:S75572; glucosyltransferase - Synechocystis sp. (strain PCC; E=1e-33 pir:JC5726; phosphate-prenyl glycosyl-1-phosphate transferase (EC; E=9e-33 COG: slr0820; COG2148 Sugar transferases involved in lipopolysaccharide; E=9e-35 PFAM: PF02397; Bacterial sugar transferase; E=3.6e-52 NP_870603.1 PMID: 10984043 best DB hits: BLAST: pir:D83367; hypothetical protein PA2235 [imported] - Pseudomonas; E=0.002 swissprot:P33698; EXOP_RHIME SUCCINOGLYCAN BIOSYNTHESIS TRANSPORT; E=0.010 pir:S37031; probable succinoglycan transport protein exoP -; E=0.021 COG: PA2235; COG3206 Uncharacterized protein involved in; E=2e-04 NP_870605.1 best DB hits: BLAST: pir:S75267; hypothetical protein slr1039 - Synechocystis sp. (strain; E=5e-07 swissprot:P46326; YXBB_BACSU HYPOTHETICAL 28.2 KDA PROTEIN IN; E=7e-06 gb:AAG29793.1; AF235050_16 (AF235050) methyltransferase; E=0.005 COG: slr1039; COG0500 SAM-dependent methyltransferases; E=5e-08 VC1257; COG2227; E=9e-04 BH2331; COG0500 SAM-dependent methyltransferases; E=0.001 NP_870607.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived NP_870608.1 PMID: 320005 best DB hits: BLAST: gb:AAD56934.1; AF180145_26 (AF180145) dihydrofolate reductase; E=1e-23 swissprot:P12833; DYR3_SALTY DIHYDROFOLATE REDUCTASE TYPE III; E=5e-22 pir:G82322; dihydrofolate reductase VC0440 [imported] - Vibrio; E=1e-20 COG: VC0440; COG0262 Dihydrofolate reductase; E=1e-21 PFAM: PF00186; Dihydrofolate reductase; E=2.9e-40 NP_870610.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA NP_870611.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 NP_870612.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme NP_870613.1 PMID: 2989779 PMID: 10094780 best DB hits: BLAST: swissprot:Q9Z9H5; RL17_THETH 50S RIBOSOMAL PROTEIN L17 -----; E=7e-11 pir:B75313; ribosomal protein L17 - Deinococcus radiodurans (strain; E=3e-09 swissprot:Q9ZCT0; RL17_RICPR 50S RIBOSOMAL PROTEIN L17 -----; E=3e-09 COG: DR2129; COG0203 Ribosomal protein L17; E=2e-10 PFAM: PF01196; Ribosomal protein L17; E=4.2e-06 NP_870616.1 best DB hits: PFAM: PF00327; Ribosomal protein L30p/L7e; E=0.19 NP_870617.1 PMID: 10751411 best DB hits: BLAST: gb:AAD48846.1; AF168362_1 (AF168362) protein associating with; E=3e-05 gb:AAF56739.2; (AE003762) CG12879 gene product [Drosophila; E=4e-05 pir:T15138; hypothetical protein T28F2.4 - Caenorhabditis elegans; E=5e-04 COG: NMB1786; COG2850 Uncharacterized ACR; E=0.007 PFAM: PF02373; jmjC domain; E=0.018 NP_870619.1 PMID: 7592499 best DB hits: BLAST: pir:A57710; acetyl-CoA carboxylase (EC 6.4.1.2) - wheat -----; E=2e-05 prf:2208491A; Ac-CoA carboxylase [Triticum aestivum]; E=2e-05 pir:T09538; acetyl-CoA carboxylase (EC 6.4.1.2) - alfalfa -----; E=3e-05 COG: PA0494; COG0439 Biotin carboxylase; E=2e-04 carB; COG0458 Carbamoylphosphate synthase large subunit (split gene; E=0.001 DR0668; COG0458 Carbamoylphosphate synthase large subunit (split; E=0.002 PFAM: PF02786; Carbamoyl-phosphate synthase L ch; E=0.49 NP_870620.1 PMID: 9488683 best DB hits: BLAST: swissprot:O50098; APBA_PYRHO PROBABLE 2-DEHYDROPANTOATE; E=5e-09 embl:CAB04765.1; (Z82004) ORF12(1) [Rhodococcus erythropolis]; E=2e-08 pir:T35004; probable oxidoreductase - Streptomyces coelicolor; E=5e-06 COG: PH1390; COG1893 Ketopantoate reductase; E=5e-10 PFAM: PF02558; Ketopantoate reductase PanE/ApbA; E=0.00046 NP_870622.1 PMID: 11538549 best DB hits: BLAST: gb:AAD32141.1; AF123503_1 (AF123503) Nt-gh3 deduced protein; E=6e-16 pir:T00515; hypothetical protein T20D16.20 - Arabidopsis thaliana; E=1e-15 ddbj:BAA97524.1; (AB026634) auxin-responsive-like protein; E=1e-14 NP_870625.1 PMID: 8282725 best DB hits: BLAST: embl:CAB54579.1; (AJ006397) histidine kinase [Streptococcus; E=2e-10 gb:AAG59311.1; AE005644_5 (AE005644) sensor protein for basR; E=6e-10 pir:E83212; probable sensorresponse regulator hybrid PA3462; E=3e-09 COG: PA3462; COG0642 Sensory transduction histidine kinases; E=3e-10 PFAM: PF00512; His Kinase A (phosphoacceptor); E=2.1e-10 PF02518; Histidine kinase-, DNA gyrase B; E=6.2e-15 NP_870628.1 PMID: 7476196 best DB hits: BLAST: embl:CAB87226.1; (AL163641) glucosamine-fructose-6-phosphate; E=1e-135 pir:T44486; glutamine--fructose-6-phosphate transaminase; E=1e-133 gb:AAF09884.1; AE001891_3 (AE001891); E=1e-132 COG: DR0302; COG0449 Glucosamine 6-phosphate synthetase, contains; E=1e-133 PFAM: PF00310; Glutamine amidotransferases class-II; E=2.1e-65 PF01380; SIS domain; E=2.2e-39 NP_870630.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate NP_870631.1 PMID: 2993799 best DB hits: BLAST: ddbj:BAB06774.1; (AP001517) 3-isopropylmalate dehydratase small; E=3e-60 pir:E81128; 3-isopropylmalate dehydratase, small chain NMB1034; E=2e-58 pir:C81836; probable 3-isopropylmalate dehydratase (EC 4.2.1.33); E=5e-58 COG: BH3055; COG0066 3-isopropylmalate dehydratase small subunit; E=3e-61 PFAM: PF00694; Aconitase C-terminal domain; E=5e-62 NP_870633.1 PMID: 8787418 best DB hits: BLAST: swissprot:P96076; DCOP_THETH OROTIDINE 5'-PHOSPHATE DECARBOXYLASE; E=3e-38 pir:G75302; orotidine 5'-phosphate decarboxylase - Deinococcus; E=5e-35 gb:AAG19923.1; (AE005076) orotidine-5'-monophosphate (Ura3); PyrF; E=4e-33 COG: DR2200_2; COG0284 Orotidine-5'-phosphate decarboxylase; E=1e-35 NP_870637.1 best DB hits: BLAST: gb:AAB91057.1; (AE001094) molybdopterin oxidoreductase, iron-sulfur; E=5e-29 gb:AAG19285.1; (AE005024) molybdopterin oxidoreductase; HmoA; E=3e-26 gb:AAB90738.1; (AE001069) molybdopterin oxidoreductase, iron-sulfur; E=1e-24 COG: AF0175; COG0437 Fe-S-cluster-containing hydrogenase components 1; E=5e-30 PFAM: PF01568; Molydopterin dinucleotide bin; E=0.018 PF00037; 4Fe-4S binding domain; E=0.15 NP_870639.1 best DB hits: BLAST: gb:AAB91058.1; (AE001094) molybdopterin oxidoreductase, membrane; E=5e-06 pir:T50876; hypothetical membrane protein [imported] - Rubrivivax; E=7e-06 gb:AAG19286.1; (AE005024) molybdopterin oxidoreductase; Moz; E=0.019 NP_870641.1 best DB hits: PFAM: PF01473; cell wall binding repea; E=0.31 PF02326; YMF19 hypothetical plant mitocho; E=0.59 NP_870643.1 best DB hits: BLAST: embl:CAC08530.1; (AJ249578) hypothetical protein [Rhodothermus; E=1e-39 pir:A70488; hypothetical protein aq_2189 - Aquifex aeolicus -----; E=1e-18 ddbj:BAA06975.1; (D32217) ORF3 [Desulfovibrio vulgaris]; E=1e-09 COG: aq_2189; COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in; E=1e-19 NP_870645.1 PMID: 7678007 best DB hits: BLAST: embl:CAC08531.1; (AJ249578) cytochrome oxidase subunit II; E=1e-53 swissprot:Q04441; COX2_BACFI CYTOCHROME C OXIDASE POLYPEPTIDE II; E=2e-18 pir:A23711; cytochrome-c oxidase (EC 1.9.3.1) chain IIc precursor -; E=4e-13 COG: slr1136; COG1622 Heme/copper-type cytochrome/quinol oxidases,; E=2e-10 PFAM: PF00116; Cytochrome C oxidase subunit II,; E=5.6e-05 PF00034; Cytochrome c; E=1.5e-05 NP_870646.1 PMID: 20576172 best DB hits: BLAST: embl:CAC08532.1; (AJ249578) cytochrome oxidase subunit I; E=1e-146 ddbj:BAA06976.1; (D32217) cytochrome c oxidase-like protein; E=1e-122 swissprot:Q06473; COX1_SYNY3 CYTOCHROME C OXIDASE POLYPEPTIDE I; E=3e-99 COG: slr1137; COG0843 Heme/copper-type cytochrome/quinol oxidases,; E=1e-100 RP405; COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit; E=3e-93 BS_ctaD; COG0843 Heme/copper-type cytochrome/quinol oxidases,; E=4e-91 PFAM: PF00115; Cytochrome C and Quinol oxidase pol; E=8.3e-185 NP_870648.1 PMID: 20576172 best DB hits: BLAST: embl:CAC08533.1; (AJ249578) cytochrome oxidase subunit III; E=3e-27 embl:CAA98149.1; (Z73914) ORF175 protein [Pseudomonas stutzeri]; E=2e-08 gb:AAG34379.1; AF197466_2 (AF197466) NirO [Pseudomonas; E=3e-08 COG: APE0793_2; COG1845 Heme/copper-type cytochrome/quinol oxidase,; E=5e-08 slr2083; COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit; E=8e-08 VNG0662G; COG1845 Heme/copper-type cytochrome/quinol oxidase,; E=2e-06 NP_870649.1 PMID: 7678007 best DB hits: BLAST: embl:CAC08534.1; (AJ249578) cytochrome oxidase subunit IV; E=0.025 NP_870651.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS NP_870653.1 best DB hits: BLAST: ddbj:BAB05232.1; (AP001512) BH1513~unknown conserved protein in; E=3e-36 pir:S76103; hypothetical protein - Synechocystis sp. (strain PCC; E=8e-35 COG: BH1513; COG2252 Permeases; E=2e-37 NP_870655.1 PMID: 7768349 best DB hits: BLAST: pir:T42076; protein kinase homolog - Streptomyces coelicolor -----; E=2e-12 gb:AAG48248.1; AF282407_1 (AF282407) p70 ribosomal protein S6; E=2e-12 gb:AAF22219.1; AF141378_1 (AF141378) protein kinase PK4 [Zea mays]; E=2e-12 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=2e-12 PFAM: PF01636; Aminoglycoside phosphotransferas; E=0.093 PF00069; Protein kinase domain; E=6.3e-17 PF00285; Citrate synthase; E=0.22 NP_870657.1 best DB hits: BLAST: embl:CAC19834.1; (AJ401093) hypothetical protein [Actinomyces; E=0.065 ddbj:BAB10333.1; (AB016872) gene_id:K21P3.2~unknown protein; E=0.081 pir:T28679; fibrinogen-binding protein homolog - Staphylococcus; E=0.26 PFAM: PF00404; Dockerin type I repeat; E=0.01 NP_870664.1 PMID: 11759840 best DB hits: PFAM: PF01040; UbiA prenyltransferase; E=2.4e-11 NP_870666.1 PMID: 10910347 best DB hits: BLAST: gb:AAK00328.1; AF320250_1 (AF320250) YmdA [Lactobacillus; E=0.029 pir:F82689; tRNA adenylyltransferase XF1362 [imported] - Xylella; E=0.044 pir:D71218; hypothetical protein PH0007 - Pyrococcus horikoshii; E=0.054 COG: XF1362; COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; E=0.004 PH0007; COG2413 Uncharacterized ACR; E=0.005 PFAM: PF01966; HD domain; E=0.0033 NP_870667.1 PMID: 10607664 best DB hits: BLAST: gb:AAB94071.1; (AF022226) mannan-binding lectin; collectin; E=0.004 swissprot:P49259; PA2R_BOVIN 180 KD SECRETORY PHOSPHOLIPASE A2; E=0.10 gb:AAA48719.1; (J04028) proteoglycan core protein [Gallus gallus]; E=0.11 PFAM: PF00059; Lectin C-type domain; E=0.0043 NP_870668.1 PMID: 1542567 best DB hits: BLAST: pir:H65118; hypothetical adenine-specific methylase in fis- envR; E=4e-29 swissprot:P28638; YHDJ_ECOLI HYPOTHETICAL ADENINE-SPECIFIC; E=4e-29 gb:AAG58390.1; AE005554_1 (AE005554) methyltransferase; E=6e-29 COG: yhdJ; COG0863 Adenine-specific DNA methylase; E=4e-30 jhp1284; COG2189 Adenine specific DNA methylase Mod; E=2e-09 jhp0248; COG0863 Adenine-specific DNA methylase; E=1e-07 PFAM: PF01555; DNA methylase; E=2e-41 NP_870669.1 PMID: 9501997 best DB hits: BLAST: ddbj:BAB10033.1; (AB007727) contains similarity to unknown; E=0.18 NP_870670.1 PMID: 9139909 best DB hits: BLAST: gb:AAC45221.1; (U87307) extracytoplasmic function alternative; E=5e-08 gb:AAC45219.1; (U87308) extracytoplasmic function alternative; E=1e-06 pir:H70507; probable sigE protein - Mycobacterium tuberculosis; E=7e-06 COG: Rv1221; COG1595 DNA-directed RNA polymerase specialized sigma; E=7e-07 Rv3286c; COG1191 DNA-directed RNA polymerase specialized sigma; E=2e-04 slr1545; COG1595 DNA-directed RNA polymerase specialized sigma; E=2e-04 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=6e-06 PF00140; Sigma-70 factor; E=0.019 NP_870671.1 PMID: 12024217 NP_870675.1 PMID: 1482681 best DB hits: BLAST: swissprot:Q01578; GNL_ZYMMO GLUCONOLACTONASE PRECURSOR; E=1e-54 gb:AAK03332.1; (AE006164) unknown [Pasteurella multocida]; E=1e-39 pir:B82698; gluconolactonase precursor XF1297 [imported] - Xylella; E=3e-39 COG: XF1297; COG3386 Uncharacterized protein; E=3e-40 NP_870678.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis NP_870679.1 PMID: 7704272 best DB hits: BLAST: swissprot:O53191; YO64_MYCTU DNA GLYCOSYLASE RV2464C; E=6e-55 embl:CAC10002.1; (AL442143) DNA repair hydrolase; E=6e-46 swissprot:P95744; FPG_SYNEN FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE; E=1e-14 COG: Rv2464c; COG0266 Formamidopyrimidine-DNA glycosylase; E=2e-55 PFAM: PF01149; Formamidopyrimidine-DNA glycos; E=4.3e-40 NP_870684.1 PMID: 2180903 best DB hits: BLAST: pir:F83550; serine proteinase MucD precursor PA0766 [imported] -; E=1e-50 swissprot:Q44597; DEGP_BRUAB PROBABLE SERINE PROTEASE DO-LIKE; E=9e-47 gb:AAK01318.1; (AF190580) MucD [Pseudomonas syringae pv.; E=2e-46 COG: PA0766; COG0265 Trypsin-like serine proteases, typically; E=1e-51 htrA; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=9e-44 aq_1450; COG0265 Trypsin-like serine proteases, typically; E=2e-43 PFAM: PF00089; Trypsin; E=1.8e-14 PF00595; PDZ domain (Also known as DHR or GLG; E=1.4e-10 NP_870686.1 PMID: 6171647 best DB hits: BLAST: ddbj:BAB06777.1; (AP001517) 2-isopropylmalate synthase [Bacillus; E=1e-133 pir:A75045; 2-isopropylmalate synthase (leua-1) PAB0890 - Pyrococcus; E=1e-131 pir:F75391; 2-isopropylmalate synthase - Deinococcus radiodurans; E=1e-131 COG: BH3058; COG0119 Isopropylmalate/homocitrate/citramalate synthases; E=1e-134 PFAM: PF00682; HMGL-like; E=1.7e-127 NP_870691.1 catalyzes the reduction of ribonucleotides to deoxyribonucleotides; the rate-limiting step in dNTP synthesis NP_870692.1 PMID: 11557134 best DB hits: BLAST: pir:C82181; conserved hypothetical protein VC1592 [imported] -; E=2e-15 pir:G70332; conserved hypothetical protein aq_367 - Aquifex aeolicus; E=6e-15 pir:D83238; hypothetical protein PA3258 [imported] - Pseudomonas; E=2e-13 COG: VC1592; COG2200 Diguanylate cyclase/phosphodiesterase domain 2 (EAL); E=1e-16 aq_367_3; COG2200 Diguanylate cyclase/phosphodiesterase domain 2; E=6e-16 VC1641; COG2200 Diguanylate cyclase/phosphodiesterase domain 2 (EAL); E=2e-09 PFAM: PF00498; FHA domain; E=6.6e-15 PF00563; Domain of unknown function 2; E=3.1e-07 NP_870693.1 PMID: 1971619 PMID: 1944223 best DB hits: BLAST: pir:E72032; general secretion pathway protein E CP1055 [imported] -; E=6e-91 embl:CAA70956.1; (Y09824) etpE [Escherichia coli]; E=2e-93 gb:AAC70102.1; (AF074613) type II secretion protein [Escherichia; E=6e-94 COG: slr0063; COG2804 Predicted ATPases involved in pili biogenesis, PilB; E=1e-81 PFAM: PF00004; ATPase associated with variou; E=0.0009 PF00005; ABC transporter; E=0.074 PF00448; SRP54-type protein, GTPase domain; E=0.01 NP_870696.1 PMID: 1676385 best DB hits: BLAST: pir:C70365; twitching motility protein PilT - Aquifex aeolicus; E=7e-81 pir:B75333; twitching mobility protein - Deinococcus radiodurans; E=9e-81 embl:CAB56295.1; (AJ249385) twitching motility protein; E=2e-77 COG: aq_745; COG2805 Predicted ATPases involved in pili biogenesis, PilT; E=6e-82 TM0837; COG2804 Predicted ATPases involved in pili biogenesis, PilB; E=4e-27 PFAM: PF00437; Bacterial type II secretion syst; E=0.18 PF02283; Cobinamide kinase / cobinamide p; E=0.86 PF00437; Bacterial type II secretion syst; E=1.5e-51 NP_870697.1 PMID: 1971619 best DB hits: BLAST: pir:C75333; general secretion pathway protein E - Deinococcus; E=1e-105 pir:B70469; type IV pilus assembly protein TapB - Aquifex aeolicus; E=1e-104 swissprot:P45792; TAPB_AERHY TYPE IV PILUS ASSEMBLY PROTEIN TAPB; E=1e-100 COG: DR1964; COG2804 Predicted ATPases involved in pili biogenesis, PilB; E=1e-107 PFAM: PF00005; ABC transporter; E=0.27 PF00448; SRP54-type protein, GTPase doma; E=0.01 PF00004; ATPase associated with v; E=0.0029 NP_870698.1 crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown NP_870699.1 PMID: 1971619 best DB hits: BLAST: pir:A75344; pilin biogenesis protein - Deinococcus radiodurans; E=7e-48 swissprot:P22609; PILC_PSEAE FIMBRIAL ASSEMBLY PROTEIN PILC; E=7e-44 pir:C83078; still frameshift type 4 fimbrial biogenesis protein PilC; E=3e-41 COG: DR1863; COG1459 General secretory pathway protein F; E=6e-49 PFAM: PF00482; Bacterial type II secretion system p; E=1.2e-68 NP_870701.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.62 NP_870703.1 best DB hits: PFAM: PF02501; Bacterial type II secretion system p; E=0.41 PF00114; Pilin (bacterial filament); E=0.025 NP_870705.1 best DB hits: PFAM: PF01537; Herpesvirus glycoprotein D; E=0.038 NP_870706.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.53 NP_870708.1 PMID: 6276402 best DB hits: BLAST: gb:AAD28505.1; AF121780_1 (AF121780) DNA polymerase I [Rhodothermus; E=1e-166 swissprot:P43741; DPO1_HAEIN DNA POLYMERASE I (POL I) ----- pir:; E=1e-165 gb:AAC98908.1; (AF028719) DNA polymerase type I [Rhodothermus sp.; E=1e-164 COG: HI0856_2; COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase; E=1e-122 jhp1363_2; COG0749 DNA polymerase I - 3'-5' exonuclease and; E=1e-55 RP776_1; COG0258 5'-3' exonuclease (including N-terminal domain of; E=3e-46 PFAM: PF02739; 5'-3' exonuclease, N-terminal; E=1e-62 PF01367; 5'-3' exonuclease, C-terminal; E=2e-37 PF01612; 3'-5' exonuclease; E=2.5e-47 NP_870712.1 PMID: 9851916 best DB hits: BLAST: gb:AAF60367.1; (AC006607) Hypothetical protein C09E7.a; E=0.015 gb:AAF60369.1; (AC006607) Hypothetical protein C09E7.c; E=0.20 gb:AAF17230.1; AF126020_1 (AF126020) B-cell receptor-associated; E=0.47 NP_870717.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs NP_870721.1 PMID: 3298209 best DB hits: BLAST: pir:E70885; hypothetical protein Rv2859c - Mycobacterium; E=2e-24 pir:C83609; probable glutamine amidotransferase PA0297 [imported] -; E=1e-19 pir:T36850; hypothetical protein SCI35.37 - Streptomyces coelicolor; E=1e-17 COG: Rv2859c; COG2071 Predicted glutamine amidotransferases; E=2e-25 PFAM: PF00117; Glutamine amidotransferase class-I; E=8.7e-05 NP_870724.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site NP_870725.1 PMID: 6357787 PMID: 6337136 best DB hits: BLAST: ddbj:BAB06198.1; (AP001515) tRNA methyltransferase [Bacillus; E=8e-56 swissprot:O31741; TRMD_BACSU TRNA (GUANINE-N1)-METHYLTRANSFERASE; E=3e-54 gb:AAK05662.1; AE006387_5 (AE006387) tRNA methyltransferase; E=7e-54 COG: BH2479; COG0336 tRNA-(guanine-N1)-methyltransferase; E=8e-57 PFAM: PF01746; tRNA (Guanine-1)-methyltransferas; E=2.7e-101 NP_870726.1 PMID: 6357787 PMID: 8730873 best DB hits: BLAST: pir:T05282; ribosomal protein S16, organellar - Arabidopsis; E=3e-15 gb:AAK05667.1; AE006387_10 (AE006387) 30S ribosomal protein S16; E=7e-14 ddbj:BAA97024.1; (AB024035) 30S ribosomal protein S16; E=1e-13 COG: BH2483; COG0228 Ribosomal protein S16; E=2e-14 PFAM: PF00886; Ribosomal protein S16; E=1.8e-20 NP_870727.1 PMID: 6357787 PMID: 1279430 best DB hits: BLAST: pir:F72236; signal recognition particle protein - Thermotoga; E=2e-87 ddbj:BAB06203.1; (AP001515) signal recognition particle [Bacillus; E=2e-85 gb:AAF69242.1; AF173880_5 (AF173880) signal recognition particle; E=3e-84 COG: TM1565; COG0541 Signal recognition particle GTPase; E=2e-88 PFAM: PF02881; SRP54-type protein, helical b; E=8.8e-21 PF02223; Thymidylate kinase; E=0.33 PF00485; Phosphoribulokinase / Uridine; E=0.03 NP_870731.1 PMID: 8813763 best DB hits: BLAST: pir:G69148; dolichyl-phosphate mannose synthase related protein 1 -; E=2e-19 pir:D69148; dolichyl-phosphate mannose synthase related protein 2 -; E=5e-18 embl:CAB61668.1; (AL133213) glycosyl transferase.; E=7e-18 COG: MTH377; COG0463 Glycosyltransferases involved in cell wall; E=2e-20 PFAM: PF00535; Glycosyl transferase; E=1.8e-23 NP_870735.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA NP_870736.1 PMID: 8969501 best DB hits: BLAST: pir:T01743; ribosomal protein L10, chloroplast - common tobacco; E=3e-08 swissprot:P42923; RL10_BACSU 50S RIBOSOMAL PROTEIN L10 (BL5) (COLD; E=3e-08 gb:AAK05367.1; AE006359_5 (AE006359) 50S ribosomal protein L10; E=8e-08 COG: BS_rplJ; COG0244 Ribosomal protein L10; E=3e-09 NP_870737.1 PMID: 10488095 best DB hits: BLAST: pir:S30199; ribosomal protein L12.1 precursor, chloroplast - rye; E=3e-09 embl:CAA44226.1; (X62368) ribosomal protein L12-1a [Nicotiana; E=2e-08 prf:0601198A; polymerase beta,RNA [Escherichia coli]; E=4e-08 COG: aq_1937; COG0222 Ribosomal protein L7/L12; E=3e-07 PFAM: PF00542; Ribosomal protein L7/L12 C-term; E=4.6e-28 NP_870741.1 PMID: 11759840 best DB hits: BLAST: embl:CAB93418.1; (AL357524) transposase [Streptomyces; E=0.60 NP_870744.1 PMID: 1624424 PMID: 8432722 best DB hits: BLAST: swissprot:P23882; FMT_ECOLI METHIONYL-TRNA FORMYLTRANSFERASE; E=1e-44 gb:AAG58409.1; AE005556_2 (AE005556); E=3e-44 pdb:2FMT; A Chain A, Methionyl-Trnafmet Formyltransferase; E=6e-44 COG: fmt; COG0223 Methionyl-tRNA formyltransferase; E=1e-45 PFAM: PF00551; Formyl transferase; E=6e-35 PF02911; Formyl transferase, C-terminal; E=6.3e-29 NP_870745.1 PMID: 8112305 best DB hits: BLAST: gb:AAG33972.1; (AF250958) peptide deformylase-like protein; E=4e-31 gb:AAG33980.1; AF269165_1 (AF269165) peptide deformylase; E=6e-31 pir:T48639; hypothetical protein T15N1.150 - Arabidopsis thaliana; E=1e-30 COG: PA0019; COG0242 N-formylmethionyl-tRNA deformylase; E=1e-26 PFAM: PF01327; Polypeptide deformylase; E=1.2e-59 NP_870746.1 PMID: 1738314 PMID: 9097039 best DB hits: BLAST: embl:CAC05751.1; (AL391751) peptide transport system; E=6e-96 ddbj:BAB07364.1; (AP001519) oligopeptide ABC transporter; E=1e-92 pir:B72424; oligopeptide ABC transporter ATP-binding protein -; E=3e-90 COG: BH3645; COG1124 ABC-type dipeptide/oligopeptide/nickel transport; E=1e-93 VNG2526G; COG1123 ATPase components of uncharacterized ABC-type; E=3e-84 BH0027; COG1124 ABC-type dipeptide/oligopeptide/nickel transport; E=3e-84 PFAM: PF00485; Phosphoribulokinase / Uridine; E=0.17 PF00004; ATPase associated with; E=0.029 PF00006; ATP synthase alpha/beta famil; E=0.25 NP_870747.1 PMID: 1738314 PMID: 1901616 best DB hits: BLAST: gb:AAG22037.1; AF305387_4 (AF305387) OppD [Bacillus thuringiensis]; E=2e-95 pir:H75380; peptide ABC transporter ATP-binding protein -; E=8e-93 gb:AAA62691.1; (M57689) sporulation protein [Bacillus subtilis]; E=1e-92 COG: DR1568; COG0444 ABC-type dipeptide/oligopeptide/nickel transport; E=7e-94 Rv1281c; COG1123 ATPase components of uncharacterized ABC-type; E=5e-80 TM1064; COG0444 ABC-type dipeptide/oligopeptide/nickel transport; E=1e-78 PFAM: PF01580; FtsK/SpoIIIE family; E=0.62 PF00005; ABC transporter; E=2.3e-63 NP_870748.1 PMID: 1738314 PMID: 1901616 best DB hits: BLAST: pir:D82242; oligopeptide ABC transporter, permease VC1093; E=4e-50 swissprot:P45053; OPPC_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM; E=1e-46 pir:D70141; oligopeptide ABC transporter, permease (oppC-1); E=5e-46 COG: VC1093; COG1173 ABC-type dipeptide/oligopeptide/nickel transport; E=4e-51 PFAM: PF00528; Binding-protein-dependent transpor; E=9.1e-10 NP_870749.1 PMID: 1738314 PMID: 2187863 best DB hits: BLAST: ddbj:BAA14776.1; (D90763) Oligopeptide transport system permease; E=8e-56 swissprot:P31132; OPPB_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM; E=1e-55 pir:B38447; oligopeptide permease oppB homolog - Bacillus subtilis; E=2e-55 COG: oppB; COG0601 ABC-type dipeptide/oligopeptide/nickel transport; E=1e-56 PFAM: PF00528; Binding-protein-dependent transpor; E=0.00032 NP_870750.1 PMID: 1738314 PMID: 1901616 best DB hits: BLAST: swissprot:P24141; OPPA_BACSU OLIGOPEPTIDE-BINDING PROTEIN OPPA; E=1e-60 pir:A38447; oligopeptide ABC transport system substrate-binding; E=1e-60 embl:CAB96044.1; (AJ250012) surface antigen [Borrelia afzelii]; E=6e-60 COG: BS_oppA; COG0747 ABC-type dipeptide/oligopeptide/nickel transport; E=1e-61 PFAM: PF00496; Bacterial extracellular solute-bind; E=1.3e-13 NP_870752.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate NP_870753.1 PMID: 8905231 best DB hits: BLAST: swissprot:P73079; YK42_SYNY3 HYPOTHETICAL 31.9 KD PROTEIN SLR2042; E=5e-19 pir:B83141; conserved hypothetical protein PA4030 [imported] -; E=3e-13 pir:C64962; probable membrane protein b1976 - Escherichia coli; E=5e-08 COG: slr2042; COG3228 Uncharacterized BCR; E=5e-20 TP0379; COG0653 Preprotein translocase subunit SecA (ATPase, RNA; E=0.001 yecA; COG3318 Predicted metal-binding protein related to the; E=0.002 PFAM: PF02810; SEC-C motif; E=5.3e-08 NP_870760.1 PMID: 7699720 best DB hits: BLAST: gb:AAD20723.1; (AF051157) response regulator homolog OmpR [Vibrio; E=5e-09 pir:C82042; transcriptional regulator OmpR VC2714 [imported] - Vibrio; E=6e-09 pir:S42745; nitrogen assimilation regulatory protein ntrC -; E=9e-09 COG: VC2714; COG0745 Response regulators consisting of a CheY-like; E=6e-10 ompR; COG0745 Response regulators consisting of a CheY-like receiver; E=3e-09 slr0322_2; COG0784 CheY-like receiver domains; E=7e-09 PFAM: PF00072; Response regulator receiver doma; E=1.7e-20 NP_870761.1 best DB hits: PFAM: PF00515; TPR Domain; E=0.058 NP_870762.1 PMID: 9660827 best DB hits: BLAST: ddbj:BAB06261.1; (AP001515) BH2542~unknown conserved protein; E=1e-53 swissprot:O50310; YBC5_CHLVI HYPOTHETICAL 36.7 KD PROTEIN IN BCHI; E=1e-53 pir:F72373; conserved hypothetical protein - Thermotoga maritima; E=2e-53 COG: BH2542; COG0564 Pseudouridylate synthases, 23S RNA-specific; E=9e-55 PFAM: PF01479; S4 domain; E=0.0017 PF00849; RNA pseudouridylate synthase; E=7.8e-61 NP_870763.1 PMID: 10567266 best DB hits: BLAST: gb:AAF12561.1; AE001826_30 (AE001826) conserved hypothetical; E=4e-13 swissprot:P76262; YOAE_ECOLI HYPOTHETICAL 56.5 KD PROTEIN IN; E=2e-12 gb:AAG56805.1; AE005404_8 (AE005404) transport protein; E=2e-12 COG: DRB0131; COG0861 Membrane protein TerC, possibly involved in; E=4e-14 ygdQ; COG0861 Membrane protein TerC, possibly involved in tellurium; E=7e-10 yegH_1; COG0861 Membrane protein TerC, possibly involved in; E=5e-09 NP_870765.1 best DB hits: BLAST: gb:AAC14880.1; (AF060080) hypothetical protein [Chlorobium; E=1e-06 pir:C75001; hypothetical protein PAB1341 - Pyrococcus abyssi (strain; E=3e-06 embl:CAB66204.1; (AL136502) hypothetical protein SCF43.15c.; E=5e-05 COG: PAB1341; COG2120 Uncharacterized proteins, LmbE homologs; E=3e-07 PFAM: PF02585; Uncharacterized LmbE-like protein, C; E=1.1e-05 NP_870769.1 PMID: 7774814 best DB hits: BLAST: pir:T36501; probable serinethreonine protein kinase - Streptomyces; E=1e-18 pir:H75566; probable serinethreonine protein kinase - Deinococcus; E=3e-17 swissprot:P71584; PKNB_MYCTU SERINETHREONINE-PROTEIN; E=6e-17 COG: DR0058_1; COG0515 Serine/threonine protein kinases; E=3e-18 PFAM: PF00231; ATP synthase; E=0.83 PF00069; Protein kinase domain; E=5.8e-27 NP_870770.1 PMID: 1355086 best DB hits: BLAST: swissprot:Q54776; ACCD_SYNP7 ACETYL-COENZYME A CARBOXYLASE; E=1e-71 swissprot:Q57417; ACCD_SYNY3 ACETYL-COENZYME A CARBOXYLASE; E=1e-69 gb:AAC08084.1; (U38804) acetyl-CoA carboxylase carboxytransferase; E=2e-68 COG: sll0336; COG0777 Acetyl-CoA carboxylase beta subunit; E=1e-70 PFAM: PF00790; VHS domain; E=0.27 PF01039; Carboxyl transferase domain; E=0.037 NP_870771.1 PMID: 1896019 best DB hits: BLAST: swissprot:P27819; ILV3_BRANA ACETOLACTATE SYNTHASE III,; E=1e-167 swissprot:P27818; ILV1_BRANA ACETOLACTATE SYNTHASE I, CHLOROPLAST; E=1e-167 pir:S15004; acetolactate synthase (EC 4.1.3.18) 2 precursor - rape; E=1e-167 COG: AF1720; COG0028 Thiamine pyrophosphate-requiring enzymes; E=1e-129 ilvG; COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate; E=1e-123 slr2088; COG0028 Thiamine pyrophosphate-requiring enzymes; E=1e-121 PFAM: PF02776; Thiamine pyrophosphate enzyme,; E=9.8e-87 PF00205; Thiamine pyrophosphate enzyme,; E=1.2e-55 PF02775; Thiamine pyrophosphate enzyme,; E=7.1e-89 NP_870772.1 best DB hits: PFAM: PF02537; CrcB-like protein; E=0.02 NP_870773.1 PMID: 10984043 best DB hits: BLAST: pir:D83260; hypothetical protein PA3080 [imported] - Pseudomonas; E=1e-04 gb:AAK01518.1; (AF241171) oxidoreductase [Pseudomonas; E=0.38 PFAM: PF02012; BNR repeat; E=0.027 NP_870776.1 PMID: 7859749 best DB hits: BLAST: swissprot:P45694; TKT_BACSU TRANSKETOLASE ----- pir: G69723; E=1e-171 ddbj:BAB06071.1; (AP001515) transketolase [Bacillus halodurans]; E=1e-169 swissprot:Q43848; TKTC_SOLTU TRANSKETOLASE, CHLOROPLAST PRECURSOR; E=1e-164 COG: BS_tkt; COG0021 Transketolase; E=1e-172 PFAM: PF00456; Transketolase, thiamine dipho; E=1.1e-160 PF02779; Transketolase, central domain; E=1.2e-77 PF02780; Transketolase, C-terminal dom; E=1.1e-49 NP_870777.1 PMID: 3058695 PMID: 10364182 best DB hits: BLAST: swissprot:P73290; PURA_SYNY3 ADENYLOSUCCINATE SYNTHETASE; E=8e-98 swissprot:Q9X8P6; PURA_STRCO ADENYLOSUCCINATE SYNTHETASE; E=7e-94 swissprot:O08381; PURA_MYCTU ADENYLOSUCCINATE SYNTHETASE; E=1e-93 COG: Rv0357c; COG0104 Adenylosuccinate synthase; E=1e-94 PFAM: PF00709; Adenylosuccinate synthetase; E=5.7e-66 NP_870780.1 PMID: 9324260 best DB hits: BLAST: pir:T35155; hypothetical protein SC5A7.06c SC5A7.06c - Streptomyces; E=2e-36 gb:AAF26905.1; AF210843_2 (AF210843) unknown [Sorangium; E=9e-34 swissprot:Q11037; YD67_MYCTU HYPOTHETICAL 41.3 KDA PROTEIN RV1367C; E=4e-31 COG: Rv1367c; COG1680 Beta-lactamase class C and other penicillin binding; E=3e-32 NP_870782.1 PMID: 9537320 best DB hits: BLAST: swissprot:O66631; Y274_AQUAE HYPOTHETICAL PROTEIN AQ_274 -----; E=4e-28 embl:CAA75617.1; (Y15422) hypothetical protein [Lactococcus; E=1e-26 pir:B72217; conserved hypothetical protein - Thermotoga maritima; E=2e-26 COG: aq_274; COG0325 Predicted enzyme with a TIM-barrel fold; E=4e-29 PFAM: PF01168; Uncharacterized protein family UPF00; E=9e-11 NP_870783.1 PMID: 10567266 best DB hits: BLAST: pir:H75280; conserved hypothetical protein - Deinococcus radiodurans; E=5e-27 swissprot:P71551; Y959_MYCTU HYPOTHETICAL 74.6 KDA PROTEIN RV0959; E=5e-21 gb:AAB89815.1; (AE001004) A. fulgidus predicted coding region; E=0.013 COG: AF1444; COG2304 Protein containing von Willebrand factor (vWF) type; E=0.001 NP_870784.1 PMID: 2824781 best DB hits: BLAST: gb:AAG58100.1; AE005527_3 (AE005527) unknown protein encoded by; E=0.002 gb:AAG53987.1; AF327445_1 (AF327445) transposase A; E=0.003 gb:AAF28119.1; AF153317_15 (AF153317) InsA [Shigella; E=0.007 COG: PA1937; COG2963 Transposase; E=0.004 PFAM: PF01381; Helix-turn-helix; E=0.53 PF01527; Transposase; E=6.1e-18 NP_870785.1 PMID: 2824781 best DB hits: BLAST: gb:AAA88919.1; (U13013) ORFB [Leptospira interrogans]; E=3e-47 gb:AAA88916.1; (U13012) ORFB [Leptospira interrogans]; E=1e-46 gb:AAC05649.1; (AF038931) probable transposase-related protein; E=1e-45 COG: DRB0019.2; COG2801 transposase; E=1e-35 PFAM: PF00665; Integrase core domain; E=4.8e-40 NP_870787.1 PMID: 2215213 best DB hits: BLAST: swissprot:P45388; YAEJ_PSEPU HYPOTHETICAL 15.2 KD PROTEIN IN PCAJ; E=3e-16 embl:CAA63804.1; (X93605) hypothetical protein YAEJ [Zymomonas; E=7e-15 pir:A83538; conserved hypothetical protein PA0868 [imported] -; E=4e-12 COG: PA0868; COG1186 Protein chain release factor B; E=4e-13 sll1110; COG0216 Protein chain release factor A; E=0.010 PFAM: PF00472; Peptidyl-tRNA hydrolase domain; E=2.2e-09 NP_870788.1 best DB hits: PFAM: PF02151; UvrB/uvrC motif; E=0.0011 NP_870789.1 PMID: 8757734 best DB hits: BLAST: gb:AAB38420.1; (L39938) histidine protein kinase [Sinorhizobium; E=2e-16 pir:E83083; probable two-component sensor PA4494 [imported] -; E=3e-16 gb:AAA93222.1; (U22925) RegB [Rhodobacter sphaeroides]; E=2e-12 COG: PA4494; COG0642 Sensory transduction histidine kinases; E=2e-17 PFAM: PF00512; His Kinase A (phosphoacceptor; E=0.011 PF02518; Histidine kinase-, DNA gyrase; E=1.2e-28 NP_870790.1 PMID: 7699720 best DB hits: BLAST: pir:D83083; probable two-component response regulator PA4493; E=8e-30 gb:AAF87208.1; AF228577_2 (AF228577) ActR [Rhizobium leguminosarum; E=8e-30 swissprot:Q52913; ACTR_RHIME ACID TOLERANCE REGULATORY PROTEIN; E=1e-29 COG: PA4493; COG0784 CheY-like receiver domains; E=8e-31 TP0519; COG2204 AAA superfamily ATPases with N-terminal receiver; E=3e-12 BH3787; COG0784 CheY-like receiver domains; E=8e-11 PFAM: PF00072; Response regulator receiver doma; E=2.9e-25 NP_870795.1 best DB hits: BLAST: swissprot:O34617; YLON_BACSU HYPOTHETICAL 41.6 KDA PROTEIN IN; E=1e-73 pir:B81098; conserved hypothetical protein NMB1308 [imported] -; E=1e-69 pir:F81843; conserved hypothetical protein NMA1522 [imported] -; E=2e-69 COG: BS_yloN; COG0820 Predicted Fe-S oxidoreductase; E=1e-74 NP_870806.1 best DB hits: BLAST: gb:AAG56658.1; AE005390_5 (AE005390) oxidoreductase, Fe-S; E=2e-16 pir:G64924; nrfC protein homolog b1671 - Escherichia coli -----; E=4e-16 gb:AAG57820.1; AE005499_7 (AE005499) involved in electron; E=3e-15 COG: ydhX; COG0437 Fe-S-cluster-containing hydrogenase components 1; E=4e-17 hydN; COG1142 Fe-S-cluster-containing hydrogenase components 2; E=3e-16 AF0157; COG0437 Fe-S-cluster-containing hydrogenase components 1; E=8e-14 PFAM: PF00027; Cyclic nucleotide-binding domain; E=0.0017 PF00037; 4Fe-4S binding domain; E=0.31 NP_870811.1 PMID: 10731132 best DB hits: BLAST: gb:AAF50733.1; (AE003564) CG10487 gene product [Drosophila; E=0.003 ddbj:BAA34290.1; (AB014769) glutaminyl cyclase [Bothrops; E=0.005 embl:CAA50438.1; (X71125) glutaminyl-peptide cyclotransferase; E=0.44 NP_870813.1 PMID: 8905232 best DB hits: BLAST: swissprot:P77234; YBEQ_ECOLI HYPOTHETICAL 37.3 KDA PROTEIN IN; E=8e-40 gb:AAD41587.1; AF057704_3 (AF057704) enhanced entry protein EnhC; E=1e-37 pir:T46587; hypothetical protein [imported] - Vogesella indigofera; E=1e-35 COG: ybeQ; COG0790 TPR repeat proteins; E=7e-41 NP_870821.1 PMID: 10731132 best DB hits: BLAST: gb:AAF82144.1; AC034256_8 (AC034256) Contains similarity to F-box; E=2e-07 gb:AAF44956.1; AE003406_161 (AE003416) symbol=BG:DS07108.4; E=1e-04 gb:AAF53475.1; (AE003648) BG:DS07108.4 gene product [Drosophila; E=1e-04 NP_870822.1 PMID: 8905231 best DB hits: BLAST: pir:S76466; hypothetical protein sll1853 - Synechocystis sp. (strain; E=6e-18 NP_870823.1 PMID: 1444267 best DB hits: BLAST: pir:D83229; probable FAD-dependent monooxygenase PA3328 [imported] -; E=1e-07 pir:H70986; probable hyroxylase - Mycobacterium tuberculosis (strain; E=2e-07 pir:T35323; probable hydroxylase - Streptomyces coelicolor -----; E=1e-06 COG: PA3328; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related; E=1e-08 BS_yetM; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and; E=2e-04 PA2587; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related; E=5e-04 PFAM: PF01360; Monooxygenase; E=2.8e-12 NP_870824.1 PMID: 1444267 best DB hits: BLAST: pir:T37167; probable oxidoreductase - Streptomyces coelicolor; E=4e-08 gb:AAD25066.1; AF121000_13 (AF121000) oxidoreductase; E=0.001 pir:D83122; probable FAD-dependent monooxygenase PA4190 [imported] -; E=0.004 COG: PA4190; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related; E=4e-04 PFAM: PF01360; Monooxygenase; E=0.33 NP_870825.1 best DB hits: BLAST: ddbj:BAA92043.1; (AK002026) unnamed protein product [Homo; E=0.87 ddbj:BAB13962.1; (AK022105) unnamed protein product [Homo; E=0.87 ref:XP_012653.1; hypothetical protein FLJ11164 [Homo sapiens]; E=0.87 NP_870827.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.24 NP_870828.1 PMID: 9384377 best DB hits: BLAST: pir:E69759; hypothetical protein ycgR - Bacillus subtilis -----; E=5e-06 ddbj:BAB05237.1; (AP001512) BH1518~unknown conserved protein; E=2e-04 pir:H70420; conserved hypothetical protein aq_1388 - Aquifex; E=6e-04 COG: BS_ycgR; COG0701 Predicted permeases; E=4e-07 NP_870830.1 PMID: 10567266 best DB hits: BLAST: pir:H72289; hypothetical protein TM1132 - Thermotoga maritima; E=2e-67 pir:B71126; hypothetical protein PH0776 - Pyrococcus horikoshii; E=2e-67 ddbj:BAB04323.1; (AP001509) methanol dehydrogenase regulatory; E=8e-67 COG: TM1132; COG0714 MoxR-like ATPases; E=2e-68 PFAM: PF00004; ATPase associated with va; E=0.00018 PF01078; Magnesium chelatase, subunit Chl; E=1.5e-09 NP_870831.1 PMID: 10452618 best DB hits: BLAST: pir:D75012; hypothetical protein PAB1274 - Pyrococcus abyssi (strain; E=3e-04 gb:AAB91268.1; (AE001110) A. fulgidus predicted coding region; E=0.006 pir:F70464; hypothetical protein aq_1912 - Aquifex aeolicus -----; E=0.011 COG: PAB1274_1; COG1305 transglutaminases, cysteine; E=4e-04 PFAM: PF02553; Cobalt transport protein compo; E=0.37 PF01841; Transglutaminase-like superfam; E=0.00013 NP_870832.1 best DB hits: BLAST: pir:T34965; probable membrane protein - Streptomyces coelicolor; E=3e-08 ddbj:BAB04451.1; (AP001509) BH0732~unknown conserved protein in; E=0.002 pir:H71125; hypothetical protein PH0774 - Pyrococcus horikoshii; E=0.012 COG: BH0732; COG1721 Uncharacterized ACR; E=1e-04 PFAM: PF01882; Protein of unknown function DUF58; E=7.1e-10 NP_870834.1 best DB hits: BLAST: swissprot:P77774; YFGL_ECOLI HYPOTHETICAL 41.9 KD PROTEIN IN; E=0.006 gb:AAG57622.1; AE005480_9 (AE005480) dehydrogenase; E=0.007 gb:AAG31169.1; (AF314961) unknown [Salmonella typhimurium]; E=0.056 COG: yfgL; COG1520 Uncharacterized proteins of WD40-like repeat family; E=6e-04 NP_870840.1 PMID: 11259647 NP_870843.1 best DB hits: PFAM: PF02271; Ubiquinol-cytochrome C reductase com; E=0.21 NP_870844.1 PMID: 9054507 best DB hits: BLAST: pir:F83108; hypothetical protein PA4303 [imported] - Pseudomonas; E=2e-12 embl:CAA06604.1; (AJ005576) MinD protein [Streptomyces griseus]; E=2e-10 embl:CAB92599.1; (AL356813) septum site-determining; E=4e-10 COG: DR0013; COG1192 ATPases involved in chromosome partitioning; E=2e-09 BH2436; COG0455 ATPases involved in chromosome partitioning; E=2e-07 HP0331; COG2894 Septum formation inhibitor-activating ATPase; E=4e-07 PFAM: PF00142; 4Fe-4S iron sulfur cluster bindin; E=0.27 NP_870845.1 PMID: 7934814 best DB hits: BLAST: gb:AAB36933.1; (U77780) secretory protein kinase [Chlorobium; E=2e-98 gb:AAF40195.1; AF229646_7 (AF229646) CpaF [Caulobacter crescentus]; E=2e-92 gb:AAG33866.1; AF317389_1 (AF317389) type IV NTPase; E=4e-86 COG: PA4302; COG0630 Predicted ATPases involved in pili and flagella; E=2e-78 PFAM: PF01580; FtsK/SpoIIIE family; E=0.13 PF01443; Viral (Superfamily 1) RNA hel; E=0.067 PF00437; Bacterial type II secretion s; E=2.4e-24 NP_870846.1 PMID: 11029439 best DB hits: BLAST: gb:AAF40196.1; AF229646_8 (AF229646) TadB [Caulobacter crescentus]; E=0.005 gb:AAD38173.2; AF152598_2 (AF152598) TadB [Actinobacillus; E=0.41 NP_870847.1 PMID: 8843436 best DB hits: BLAST: embl:CAB92604.1; (AL356813) integral membrane protein; E=0.002 NP_870848.1 PMID: 11298281 best DB hits: BLAST: gb:AAF81067.1; AF223364_2 (AF223364) unknown [Myxococcus xanthus]; E=8e-12 embl:CAB92612.1; (AL356813) secreted protein; E=6e-05 swissprot:Q9UZM5; Y743_PYRAB HYPOTHETICAL PROTEIN PAB0743 -----; E=0.006 COG: PAB0743; COG1430 Uncharacterized ACR; E=6e-04 PFAM: PF02643; Uncharacterized ACR, COG1430; E=4.1e-08 NP_870849.1 PMID: 8688087 best DB hits: BLAST: swissprot:Q58492; YA92_METJA HYPOTHETICAL PROTEIN MJ1092 -----; E=5e-07 swissprot:P76425; YOHM_ECOLI HYPOTHETICAL 30.4 KDA PROTEIN IN; E=0.003 gb:AAG57167.1; AE005437_2 (AE005437) orf, hypothetical protein; E=0.019 COG: MJ1092; COG2215 Predicted membrane protein; E=5e-08 NP_870851.1 PMID: 9537320 best DB hits: BLAST: pir:B70403; hypothetical protein aq_1194 - Aquifex aeolicus -----; E=3e-05 pir:G75360; conserved hypothetical protein - Deinococcus radiodurans; E=1e-04 pir:S74786; hypothetical protein slr1083 - Synechocystis sp. (strain; E=0.003 NP_870855.1 PMID: 8843436 best DB hits: BLAST: embl:CAB71851.1; (AL138667) monooxygenase. [Streptomyces; E=0.003 gb:AAB53030.1; (U62055) TrkA [Bacillus subtilis]; E=0.023 pir:E69725; potassium uptake trkA - Bacillus subtilis -----; E=0.023 COG: BS_trkA; COG2072 Predicted flavoprotein involved in K+ transport; E=0.002 PFAM: PF01134; Glucose inhibited division prot; E=0.5 PF02254; KTN NAD-binding domain; E=0.066 PF02032; Phytoene dehydrogenase related; E=0.88 NP_870856.1 PMID: 1655697 best DB hits: BLAST: pir:D82953; conserved hypothetical protein PA5535 [imported] -; E=1e-109 embl:CAC08207.1; (AJ278349) P44k protein [Rhodococcus sp. AJ270]; E=1e-101 pir:B69760; conserved hypothetical protein yciC - Bacillus subtilis; E=1e-98 COG: PA5535; COG0523 GTPases (G3E family); E=1e-110 PFAM: PF01443; Viral (Superfamily 1) RNA hel; E=0.08 PF01495; HypB/UreG nucleotide-binding; E=0.026 PF02492; Cobalamin synthesis protein/P; E=9.1e-107 NP_870859.1 PMID: 1655697 best DB hits: BLAST: swissprot:P33030; YEIR_ECOLI HYPOTHETICAL 36.1 KD PROTEIN IN; E=1e-47 gb:AAG57311.1; AE005450_1 (AE005450) orf, hypothetical protein; E=8e-47 ddbj:BAA15982.1; (D90849) ORF_ID:o369#5; similar to [SwissProt; E=1e-44 COG: yeiR; COG0523 GTPases (G3E family); E=1e-48 PFAM: PF01443; Viral (Superfamily 1) RNA hel; E=0.025 PF02492; Cobalamin synthesis protein/P; E=2.3e-13 NP_870863.1 PMID: 7798143 PMID: 2993806 PMID: 2823881 best DB hits: BLAST: swissprot:Q45765; FUR_BORPE FERRIC UPTAKE REGULATION PROTEIN; E=3e-05 swissprot:P06975; FUR_ECOLI FERRIC UPTAKE REGULATION PROTEIN; E=2e-04 gb:AAD01582.1; (AF016035) ferric uptake regulation protein; E=2e-04 COG: fur; COG0735 Fe2+/Zn2+ uptake regulation proteins; E=2e-05 PFAM: PF00403; Heavy-metal-associated domain; E=0.18 PF01475; Ferric uptake regulator family; E=7.4e-05 NP_870865.1 PMID: 8326859 best DB hits: BLAST: gb:AAG60826.1; AF322012_131 (AF322013) RhcC2 [Bradyrhizobium; E=2e-29 swissprot:P55702; Y4XJ_RHISN HYPOTHETICAL 44.3 KD PROTEIN Y4XJ; E=5e-29 pir:G83108; probable type II secretion system protein PA4304; E=2e-21 COG: PA4304; COG1450 General secretory pathway protein D; E=2e-22 PFAM: PF00263; Bacterial type II and III secretion; E=5.2e-06 NP_870867.1 PMID: 97128806 best DB hits: BLAST: gb:AAA62535.1; (U21320) contains TPR domain-like repeats; E=2e-04 gb:AAB63465.1; (U77412) O-linked GlcNAc transferase; E=2e-04 pir:H83171; type 4 fimbrial biogenesis protein PilF PA3805; E=4e-04 COG: PA3805; COG0457 TPR-repeat-containing proteins; E=4e-05 NP_870869.1 PMID: 3031429 best DB hits: BLAST: pir:C83259; hypothetical protein PA3087 [imported] - Pseudomonas; E=1e-54 ddbj:BAB06564.1; (AP001516) diadenosine tetraphosphatase; E=8e-10 embl:CAA11911.1; (AJ224354) protein serine-threonine phosphatase,; E=6e-08 COG: PA3087; COG0639 Diadenosine tetraphosphatase and related; E=1e-55 NP_870870.1 PMID: 11479323 best DB hits: BLAST: swissprot:Q46930; NUDH_ECOLI PROBABLE (DI)NUCLEOSIDE POLYPHOSPHATE; E=0.16 NP_870871.1 PMID: 7984107 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=1e-69 pir:S75130; sensory transduction histidine kinase slr2098 -; E=4e-57 pir:C82424; sensor histidine kinase LuxQ VCA0736 [imported] - Vibrio; E=8e-56 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=8e-57 PFAM: PF00785; PAC motif; E=0.34 PF00512; His Kinase A (phosphoacceptor) d; E=8.1e-23 PF02518; Histidine kinase-, DNA gyrase B-; E=3.6e-41 NP_870875.1 best DB hits: BLAST: ddbj:BAB10342.1; (AB016872) contains similarity to two-component; E=0.63 NP_870876.1 PMID: 2882477 best DB hits: BLAST: pir:H70558; hypothetical protein Rv1626 - Mycobacterium tuberculosis; E=3e-16 pir:T35758; probable response regulator - Streptomyces coelicolor; E=4e-15 pir:S52249; response regulator nasT - Azotobacter vinelandii -----; E=1e-12 COG: Rv1626; COG0784 CheY-like receiver domains; E=2e-17 glnG; COG2204 AAA superfamily ATPases with N-terminal receiver; E=3e-06 MTH447_1; COG0784 CheY-like receiver domains; E=2e-04 PFAM: PF00072; Response regulator receiver doma; E=0.0018 NP_870884.1 PMID: 9389475 best DB hits: BLAST: gb:AAB89309.1; (AE000969) cysteine proteinase, ; E=0.30 PFAM: PF01839; FG-GAP repeat; E=0.31 NP_870887.1 PMID: 8041620 best DB hits: BLAST: swissprot:P45043; XYLR_HAEIN XYLOSE OPERON REGULATORY PROTEIN; E=3e-40 swissprot:P37390; XYLR_ECOLI XYLOSE OPERON REGULATORY PROTEIN; E=4e-39 ddbj:BAB03212.1; (AB046360) xylose operon regulatory; E=1e-34 COG: HI1106_1; COG1609 Transcriptional regulators; E=4e-22 HI1106_2; COG2207 AraC-type DNA-binding domain-containing proteins; E=8e-12 PFAM: PF00165; Bacterial regulatory helix-turn-heli; E=2.8e-25 NP_870888.1 PMID: 1339433 best DB hits: BLAST: swissprot:P44979; YGBJ_HAEIN HYPOTHETICAL PROTEIN HI1010 -----; E=3e-48 gb:AAK03450.1; (AE006174) unknown [Pasteurella multocida]; E=8e-47 gb:AAF25989.1; AC013354_8 (AC013354) F15H18.21 [Arabidopsis; E=6e-46 COG: HI1010; COG2084 3-hydroxyisobutyrate dehydrogenase and related; E=3e-49 PFAM: PF01089; Delta 1-pyrroline-5-carboxylate; E=0.035 PF02737; 3-hydroxyacyl-CoA dehydrogenase,; E=0.00065 PF02254; KTN NAD-binding domain; E=8.4e-05 NP_870891.1 PMID: 8843436 best DB hits: BLAST: embl:CAB61805.1; (AL133236) hypothetical protein SCE65.17c; E=5e-41 ddbj:BAB05597.1; (AP001513) BH1878~unknown conserved protein; E=0.003 gb:AAB97967.1; (AF040720) xylosidasearabinosidase [Selenomonas; E=0.010 NP_870892.1 PMID: 7910580 best DB hits: BLAST: embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=7e-62 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=7e-62 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=3e-61 COG: aslA; COG3119 Arylsulfatase A and related enzymes; E=5e-31 PFAM: PF00884; Sulfatase; E=1.2e-107 NP_870893.1 best DB hits: BLAST: embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=1e-60 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=1e-60 pdb:1E2S; P Chain P, Crystal Structure Of An Arylsulfatase A; E=1e-59 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=8e-31 PFAM: PF00814; Glycoprotease; E=0.2 PF00884; Sulfatase; E=1.6e-93 PF00884; Sulfatase; E=4.5e-52 NP_870894.1 PMID: 8662838 best DB hits: BLAST: gb:AAB07813.1; (U40408) sialic-acid O-acetylesterase [Mus; E=2e-19 embl:CAA67214.1; (X98625) sialic acid-specific 9-O-acetylesterase; E=7e-19 gb:AAD55976.1; (AF156856) cytosolic sialic acid; E=9e-15 NP_870895.1 PMID: 10567266 best DB hits: BLAST: pir:B75555; probable lipaseesterase - Deinococcus radiodurans; E=8e-04 pir:T51415; Carboxylesterase-like protein - Arabidopsis thaliana; E=0.071 gb:AAF32448.1; (AC021640) hypothetical protein [Arabidopsis; E=0.17 PFAM: PF01738; Dienelactone hydrolase; E=3.9e-07 NP_870896.1 PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=2e-49 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=4e-49 pir:S07089; arylsulfatase (EC 3.1.6.1) - sea urchin (Lytechinus; E=5e-42 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=7e-33 PFAM: PF00884; Sulfatase; E=6.3e-54 NP_870897.1 PMID: 10567266 best DB hits: BLAST: pir:H70731; probable esterase - Mycobacterium tuberculosis (strain; E=4e-10 embl:CAA04934.1; (AJ001695) esterase [Thermotoga maritima]; E=2e-09 pir:F72287; esterase - Thermotoga maritima (strain MSB8) -----; E=2e-09 COG: Rv2284; COG0657 Acetyl esterase; E=4e-11 slr0825; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; E=8e-08 DR0821_2; COG0657 Acetyl esterase; E=6e-07 PFAM: PF00036; EF hand; E=0.59 NP_870898.1 PMID: 9710560 PMID: 10809675 best DB hits: BLAST: gb:AAF72520.1; AF248951_1 (AF248951) mucin-desulfating sulfatase; E=6e-35 gb:AAF55296.1; (AE003712) Sulf1 gene product [Drosophila; E=2e-28 pir:T16584; hypothetical protein K09C4.8 - Caenorhabditis elegans; E=3e-24 COG: yidJ; COG3119 Arylsulfatase A and related enzymes; E=1e-24 BS_yqgS; COG1368 Phosphoglycerol transferase and related proteins,; E=0.007 PFAM: PF02455; Hexon-associated protein (IIIa); E=0.25 PF00884; Sulfatase; E=8e-47 NP_870899.1 PMID: 8843436 best DB hits: BLAST: embl:CAB56147.1; (AL117669) hypothetical protein [Streptomyces; E=7e-12 embl:CAB55704.1; (AL117387) secreted protein; E=4e-09 embl:CAB94651.1; (AL359215) polysaccharide lyase.; E=1e-04 NP_870900.1 PMID: 8041620 best DB hits: BLAST: swissprot:P45043; XYLR_HAEIN XYLOSE OPERON REGULATORY PROTEIN; E=5e-38 swissprot:P37390; XYLR_ECOLI XYLOSE OPERON REGULATORY PROTEIN; E=8e-38 ddbj:BAB03212.1; (AB046360) xylose operon regulatory; E=2e-28 COG: HI1106_1; COG1609 Transcriptional regulators; E=1e-23 xylR_2; COG2207 AraC-type DNA-binding domain-containing proteins; E=4e-12 BH3692; COG1609 Transcriptional regulators; E=2e-05 PFAM: PF00165; Bacterial regulatory helix-turn-hel; E=3.1e-16 NP_870906.1 PMID: 2201868 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=2e-67 pir:S75142; sensory transduction histidine kinase slr1759 -; E=2e-55 embl:CAA65047.1; (X95731) sensor kinase [Synechocystis; E=3e-55 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=1e-50 PFAM: PF00989; PAS domain; E=0.011 PF00785; PAC motif; E=0.075 PF00989; PAS domain; E=0.46 NP_870907.1 PMID: 8905231 best DB hits: BLAST: pir:S76478; hypothetical protein - Synechocystis sp. (strain PCC; E=3e-41 pir:T44269; hypothetical protein KaiC [imported] - Synechococcus sp.; E=4e-39 pir:S76850; hypothetical protein - Synechocystis sp. (strain PCC; E=5e-35 COG: slr1942; COG0467 RecA-superfamily ATPases implicated in signal; E=3e-42 PFAM: PF00004; ATPase associated with; E=0.17 PF02223; Thymidylate kinase; E=0.11 PF00004; ATPase associated with; E=0.25 NP_870908.1 PMID: 2201868 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=8e-57 pir:E82198; sensor histidine kinaseresponse regulator VC1445; E=4e-49 embl:CAA37397.1; (X53315) arcB [Escherichia coli]; E=3e-48 COG: sll1353_2; COG0642 Sensory transduction histidine kinases; E=7e-43 PFAM: PF00785; PAC motif; E=0.1 PF00989; PAS domain; E=8.8e-05 PF00785; PAC motif; E=9.8e-08 NP_870910.1 PMID: 7623667 best DB hits: BLAST: pir:E83039; thiol:disulfide interchange protein DipZ PA4845; E=1e-06 pir:F81074; thiol-disulfide interchange protein dsbD homolog NMB1519; E=2e-05 pir:B81868; thiol-disulfide interchange protein dsbD homolog NMA1719; E=2e-05 COG: PA4845; COG0526 Thiol-disulfide isomerase and thioredoxins; E=1e-07 VNG1905C; COG1331 Highly conserved protein containing a thioredoxin; E=5e-06 MTH1745; COG0526 Thiol-disulfide isomerase and thioredoxins; E=6e-06 PFAM: PF00085; Thioredoxin; E=0.1 NP_870912.1 PMID: 11544236 best DB hits: BLAST: gb:AAK02042.1; AF261825_11 (AF261825) hypothetical protein; E=1e-119 swissprot:P55381; Y4BN_RHISN HYPOTHETICAL 47.6 KD PROTEIN Y4BN; E=0.011 swissprot:P28842; SUBT_BACS9 SUBTILISIN PRECURSOR ----- pir:; E=0.14 NP_870913.1 PMID: 9043130 best DB hits: BLAST: gb:AAD45539.1; U70376_1 (U70376) InsA [Streptomyces netropsis]; E=5e-33 gb:AAG60893.1; AF322013_12 (AF322013) ID460 [Bradyrhizobium; E=8e-33 ddbj:BAA19966.1; (D63923) transposase [Acetobacter pasteurianus]; E=1e-26 NP_870916.1 PMID: 9927482 best DB hits: BLAST: gb:AAK02043.1; AF261825_12 (AF261825) ATPase [Salmonella; E=1e-73 swissprot:P55530; Y4KL_RHISN HYPOTHETICAL 37.6 KD AAA-FAMILY; E=4e-40 gb:AAA64864.1; (U23723) orf300 [Escherichia coli]; E=2e-25 COG: AF0477; COG0464 ATPases of the AAA+ class; E=1e-22 AF1285; COG1223 Predicted ATPases of the AAA+ class; E=9e-20 HP1069; COG0465 ATP-dependent Zn proteases; E=8e-19 PFAM: PF00406; Adenylate kinase; E=0.57 PF00071; Ras family; E=0.09 PF01202; Shikimate kinase; E=0.028 NP_870923.1 best DB hits: BLAST: swissprot:P29939; YCB6_PSEDE HYPOTHETICAL 15.0 KD PROTEIN IN COBO; E=4e-15 pir:H81035; conserved hypothetical protein NMB1840 [imported] -; E=7e-14 pir:D81981; probable integral membrane protein NMA0616 [imported] -; E=2e-13 COG: NMB1840; COG2510 Predicted membrane protein; E=7e-15 PFAM: PF00892; Integral membrane protein DUF6; E=5.4e-17 NP_870925.1 best DB hits: BLAST: pir:S77201; hypothetical protein slr1820 - Synechocystis sp. (strain; E=7e-27 gb:AAG57388.1; AE005458_5 (AE005458) orf, hypothetical protein; E=3e-26 pir:G64996; hypothetical protein b2257 - Escherichia coli (strain; E=3e-26 COG: slr1820; COG1807 Uncharacterized protein, affecting LPS biosynthesis; E=7e-28 aq_1899; COG0463 Glycosyltransferases involved in cell wall; E=8e-27 PA3556; COG1807 Uncharacterized protein, affecting LPS biosynthesis; E=1e-22 PFAM: PF00535; Glycosyl transferase; E=7.2e-32 PF02366; Dolichyl-phosphate-mannose-pr; E=1e-13 NP_870928.1 PMID: 1444307 best DB hits: BLAST: embl:CAC16667.1; (AJ302698) beta-lactamase repressor; E=2e-06 swissprot:P18415; BLAI_STAAU PENICILLINASE REPRESSOR (REGULATORY; E=7e-06 swissprot:P06555; BLAI_BACLI PENICILLINASE REPRESSOR (REGULATORY; E=8e-06 NP_870930.1 best DB hits: PFAM: PF01569; PAP2 superfamily; E=0.00049 NP_870931.1 best DB hits: BLAST: pir:B69020; hypothetical protein MTH115 - Methanobacterium; E=8e-16 ddbj:BAA96146.1; (AP002092) ESTs; E=4e-10 gb:AAD32774.1; AC007661_11 (AC007661) unknown protein [Arabidopsis; E=9e-09 NP_870932.1 best DB hits: BLAST: pir:T36454; probable oxidoreductase - Streptomyces coelicolor; E=1e-110 pir:T51117; hypothetical protein [imported] - Brevibacterium linens; E=4e-66 gb:AAG55251.1; AE005268_4 (AE005268) dTDP-glucose enzyme; E=2e-55 COG: VC1632; COG0702 Predicted nucleoside-diphosphate-sugar epimerases; E=2e-56 PH0378; COG0451 Nucleoside-diphosphate-sugar epimerases; E=4e-05 slr0317; COG0702 Predicted nucleoside-diphosphate-sugar epimerases; E=8e-05 PFAM: PF02716; Isoflavone reductase; E=0.16 PF01118; Semialdehyde dehydrogenase, N; E=0.012 PF01370; NAD dependent epimerase/dehyd; E=0.043 NP_870933.1 PMID: 3027506 PMID: 2164680 best DB hits: BLAST: pir:E82351; ATP-dependent DNA helicase RecQ VC0196 [imported] -; E=1e-68 swissprot:P50729; RECQ_BACSU ATP-DEPENDENT DNA HELICASE RECQ; E=4e-65 gb:AAA24517.1; (M30198) recQ [Escherichia coli]; E=7e-65 COG: VC0196; COG0514 Superfamily II DNA helicase; E=1e-69 YNL112w; COG0513 Superfamily II DNA and RNA helicases; E=3e-13 PFAM: PF00270; DEAD/DEAH box helicase; E=1.2e-39 PF00271; Helicase conserved C-terminal doma; E=2e-23 NP_870936.1 best DB hits: BLAST: embl:CAA72209.1; (Y11405) replicase-associated protein; E=0.65 embl:CAB44020.1; (AJ132180) Rep protein [faba bean necrotic; E=0.65 ddbj:BAA97561.1; (AB027511) replication initiator protein [milk; E=0.79 NP_870939.1 best DB hits: BLAST: pir:E82493; conserved hypothetical protein VCA0172 [imported] -; E=3e-04 pir:B83262; hypothetical protein PA3073 [imported] - Pseudomonas; E=0.003 pir:T32949; hypothetical protein C05G6.3 - Caenorhabditis elegans; E=0.51 COG: VCA0172; COG3035 Uncharacterized BCR; E=3e-05 PFAM: PF00092; von Willebrand factor type A domain; E=2.6e-08 NP_870940.1 PMID: 9573173 NP_870942.1 best DB hits: BLAST: embl:CAC01348.1; (AL390975) ECF-subfamily sigma factor; E=2e-06 pir:H70507; probable sigE protein - Mycobacterium tuberculosis; E=7e-06 gb:AAC45221.1; (U87307) extracytoplasmic function alternative; E=7e-06 COG: Rv1221; COG1595 DNA-directed RNA polymerase specialized sigma; E=7e-07 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=1e-09 NP_870948.1 best DB hits: BLAST: embl:CAB69777.1; (AL137187) tetR-family transcriptional; E=3e-10 gb:AAD54003.1; AF088856_2 (AF088856) hypothetical protein; E=3e-07 embl:CAB95981.1; (AL360034) tetR-family regulatory; E=4e-07 COG: PA2931; COG1309 Transcriptional regulator; E=1e-05 PFAM: PF00440; Bacterial regulatory proteins, tetR; E=0.63 NP_870949.1 best DB hits: BLAST: embl:CAB59583.1; (AL132662) possible oxidoreductase [Streptomyces; E=3e-23 swissprot:Q50600; YJ33_MYCTU HYPOTHETICAL 32.2 KDA PROTEIN RV1833C; E=1e-22 gb:AAD02150.1; (AF039534) hydroxymuconic semialdehyde hydrolase; E=2e-19 COG: Rv1833c; COG0596 Predicted hydrolases or acyltransferases; E=1e-23 BH2279; COG0596 Predicted hydrolases or acyltransferases (alpha/beta; E=1e-18 BS_yugF; COG0596 Predicted hydrolases or acyltransferases; E=2e-18 PFAM: PF00561; alpha/beta hydrolase fold; E=4.1e-35 NP_870950.1 best DB hits: BLAST: pir:A72314; hypothetical protein TM0950 - Thermotoga maritima; E=3e-16 NP_870951.1 best DB hits: BLAST: swissprot:P26646; YHDH_ECOLI PROTEIN YHDH ----- pir: JS0688; E=4e-86 gb:AAG58380.1; AE005553_2 (AE005553) dehydrogenase; E=5e-86 pir:D82374; zinc-binding alcohol dehydrogenase VC0026 [imported] -; E=1e-76 COG: yhdH; COG0604 NADPH:quinone reductase and related Zn-dependent; E=4e-87 BH0538; COG1064 Zn-dependent alcohol dehydrogenases; E=0.001 PA0863; COG0604 NADPH:quinone reductase and related Zn-dependent; E=0.003 PFAM: PF00107; Zinc-binding dehydrogenases; E=2.3e-38 NP_870952.1 PMID: 3015933 PMID: 2201777 best DB hits: BLAST: pir:E75366; glutamyl-tRNA synthetase-related protein - Deinococcus; E=2e-41 swissprot:O67271; SYE_AQUAE GLUTAMYL-TRNA SYNTHETASE; E=2e-39 gb:AAF49463.1; (AE003527) CG4573 gene product [Drosophila; E=2e-37 COG: DR1687; COG0008 Glutamyl- and glutaminyl-tRNA synthetases; E=2e-42 PFAM: PF00749; tRNA synthetases class I (E and; E=2.4e-11 NP_870953.2 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA NP_870954.1 PMID: 7751300 best DB hits: BLAST: swissprot:Q55404; ACSA_SYNY3 ACETYL-COENZYME A SYNTHETASE; E=0.0 pir:D75270; acetyl-CoA synthase - Deinococcus radiodurans (strain; E=0.0 swissprot:P27550; ACSA_ECOLI ACETYL-COENZYME A SYNTHETASE; E=0.0 COG: sll0542; COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid; E=0.0 DR2471; COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases; E=0.0 AF2389-N; COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid; E=1e-172 PFAM: PF00501; AMP-binding enzyme; E=3.1e-126 NP_870955.1 best DB hits: BLAST: swissprot:P71584; PKNB_MYCTU SERINETHREONINE-PROTEIN; E=3e-40 pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=9e-38 swissprot:P54744; PKNB_MYCLE SERINETHREONINE-PROTEIN; E=2e-37 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=3e-41 PFAM: PF00069; Protein kinase domain; E=2e-47 NP_870957.1 PMID: 8125347 best DB hits: BLAST: swissprot:P55650; Y4SG_RHISN HYPOTHETICAL 37.0 KD PROTEIN Y4SG; E=1e-17 swissprot:O66806; DDL_AQUAE D-ALANINE--D-ALANINE LIGASE; E=1e-10 swissprot:P44405; DDL_HAEIN D-ALANINE--D-ALANINE LIGASE; E=3e-10 COG: aq_521; COG1181 D-alanine-D-alanine ligase and related ATP-grasp; E=1e-11 PFAM: PF01820; D-ala D-ala ligase; E=7.8e-06 NP_870964.1 PMID: 8326859 best DB hits: BLAST: pir:S32858; outD protein - Erwinia carotovora ----- embl:; E=2e-25 swissprot:P31701; GSPD_ERWCA GENERAL SECRETION PATHWAY PROTEIN D; E=2e-25 gb:AAA58785.1; (L33796) EpsD [Vibrio cholerae]; E=1e-22 COG: hofQ; COG1450 General secretory pathway protein D; E=4e-23 PFAM: PF00263; Bacterial type II and III secretion; E=1e-45 NP_870967.1 PMID: 8335627 best DB hits: BLAST: gb:AAB65069.1; (U11582) No definition line found [Saccharomyces; E=6e-16 gb:AAA34582.1; (L19875) Dur3 [Saccharomyces cerevisiae]; E=1e-15 ddbj:BAB09166.1; (AB018113) urea active transporter-like protein; E=3e-11 COG: YHL016c; COG0591 Na+/proline, Na+/panthothenate symporters and; E=6e-17 PFAM: PF00474; Sodium:solute symporter family; E=1.4e-07 NP_870969.1 PMID: 6364131 PMID: 6302686 PMID: 6341995 PMID: 10318893 PMID: 2271529 best DB hits: BLAST: gb:AAB91125.1; (AE001099) aspartate carbamoyltransferase,; E=3e-31 swissprot:P96174; PYRB_VIBS2 ASPARTATE CARBAMOYLTRANSFERASE; E=7e-30 embl:CAC11715.1; (AL445064) probable aspartate; E=2e-29 COG: AF0106; COG0540 Aspartate carbamoyltransferase, catalytic chain; E=2e-32 AF1255; COG0078 Ornithine carbamoyltransferase; E=2e-10 PFAM: PF02729; Aspartate/ornithine carbamoyltransfe; E=3.6e-20 PF00185; Aspartate/ornithine carbamoyltransfe; E=3e-07 NP_870970.1 PMID: 10498721 best DB hits: BLAST: gb:AAG02363.1; AF210249_22 (AF210249) asparagine synthetase; E=1e-57 swissprot:P54420; ASNB_BACSU ASPARAGINE SYNTHETASE; E=3e-50 ddbj:BAB05227.1; (AP001512) asparagine synthetase [Bacillus; E=4e-49 COG: BS_asnB; COG0367 Asparagine synthase (glutamine-hydrolyzing); E=2e-51 PFAM: PF00310; Glutamine amidotransferases clas; E=4.1e-15 PF00733; Asparagine synthase; E=1.6e-13 NP_870971.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide NP_870972.1 best DB hits: BLAST: pir:G82957; hypothetical protein PA5507 [imported] - Pseudomonas; E=8e-34 embl:CAC12181.1; (AL445066) N-carbamoylsarcosine amidase related; E=2e-10 embl:CAC11866.1; (AL445065) conserved hypothetical protein; E=4e-09 COG: PA5507; COG1335 Amidases related to nicotinamidase; E=7e-35 TM0133; COG1535 2,3-Dihydro-2,3 dihydroxybenzoate synthase; E=0.001 aq_994; COG1335 Amidases related to nicotinamidase; E=0.003 PFAM: PF00857; Isochorismatase; E=3e-15 NP_870973.1 PMID: 8063110 PMID: 8195067 PMID: 11372197 best DB hits: BLAST: gb:AAD05531.1; (AF083240) c-type cytochrome precursor [Shewanella; E=5e-07 gb:AAD05534.1; (AF083240) deca-heme c-type cytochrome [Shewanella; E=4e-06 swissprot:Q57142; C554_NITEU CYTOCHROME C-554 PRECURSOR (C554); E=3e-04 NP_870975.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_870977.1 best DB hits: BLAST: pir:S76130; hypothetical protein - Synechocystis sp. (strain PCC; E=0.002 PFAM: PF00981; Rotavirus RNA-binding Protein 53 (N; E=0.37 NP_870979.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_870983.1 best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038 NP_870985.1 best DB hits: BLAST: gb:AAF26789.1; AC016829_13 (AC016829) O-linked GlcNAc; E=7e-08 gb:AAF51432.1; (AE003587) BcDNA:GH12144 gene product [Drosophila; E=3e-05 pir:S74806; hypothetical protein sll1628 - Synechocystis sp. (strain; E=2e-04 COG: sll1628; COG0457 TPR-repeat-containing proteins; E=2e-05 PFAM: PF02516; Oligosaccharyl transferase STT3 subu; E=0.29 PF00515; TPR Domain; E=0.03