-- dump date 20240506_001907 -- class Genbank::Contig -- table contig_comment -- id comment NC_015931.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002838.1.REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, MarineREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: ChemolithoautotrophREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall atREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic RidgeREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters)REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shapedREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: HyperthermophileREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106CREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram-REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: BarophileREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,007REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,007 CDSs (total) :: 1,955REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,007 CDSs (total) :: 1,955 Genes (coding) :: 1,951REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,007 CDSs (total) :: 1,955 Genes (coding) :: 1,951 CDSs (with protein) :: 1,951REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,007 CDSs (total) :: 1,955 Genes (coding) :: 1,951 CDSs (with protein) :: 1,951 Genes (RNA) :: 52REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,007 CDSs (total) :: 1,955 Genes (coding) :: 1,951 CDSs (with protein) :: 1,951 Genes (RNA) :: 52 rRNAs :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,007 CDSs (total) :: 1,955 Genes (coding) :: 1,951 CDSs (with protein) :: 1,951 Genes (RNA) :: 52 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,007 CDSs (total) :: 1,955 Genes (coding) :: 1,951 CDSs (with protein) :: 1,951 Genes (RNA) :: 52 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 47REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,007 CDSs (total) :: 1,955 Genes (coding) :: 1,951 CDSs (with protein) :: 1,951 Genes (RNA) :: 52 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 2REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,007 CDSs (total) :: 1,955 Genes (coding) :: 1,951 CDSs (with protein) :: 1,951 Genes (RNA) :: 52 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 2 Pseudo Genes (total) :: 4REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,007 CDSs (total) :: 1,955 Genes (coding) :: 1,951 CDSs (with protein) :: 1,951 Genes (RNA) :: 52 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 2 Pseudo Genes (total) :: 4 CDSs (without protein) :: 4REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,007 CDSs (total) :: 1,955 Genes (coding) :: 1,951 CDSs (with protein) :: 1,951 Genes (RNA) :: 52 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 2 Pseudo Genes (total) :: 4 CDSs (without protein) :: 4 Pseudo Genes (ambiguous residues) :: 0 of 4REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,007 CDSs (total) :: 1,955 Genes (coding) :: 1,951 CDSs (with protein) :: 1,951 Genes (RNA) :: 52 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 2 Pseudo Genes (total) :: 4 CDSs (without protein) :: 4 Pseudo Genes (ambiguous residues) :: 0 of 4 Pseudo Genes (frameshifted) :: 0 of 4REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,007 CDSs (total) :: 1,955 Genes (coding) :: 1,951 CDSs (with protein) :: 1,951 Genes (RNA) :: 52 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 2 Pseudo Genes (total) :: 4 CDSs (without protein) :: 4 Pseudo Genes (ambiguous residues) :: 0 of 4 Pseudo Genes (frameshifted) :: 0 of 4 Pseudo Genes (incomplete) :: 4 of 4REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,007 CDSs (total) :: 1,955 Genes (coding) :: 1,951 CDSs (with protein) :: 1,951 Genes (RNA) :: 52 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 2 Pseudo Genes (total) :: 4 CDSs (without protein) :: 4 Pseudo Genes (ambiguous residues) :: 0 of 4 Pseudo Genes (frameshifted) :: 0 of 4 Pseudo Genes (incomplete) :: 4 of 4 Pseudo Genes (internal stop) :: 0 of 4REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,007 CDSs (total) :: 1,955 Genes (coding) :: 1,951 CDSs (with protein) :: 1,951 Genes (RNA) :: 52 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 2 Pseudo Genes (total) :: 4 CDSs (without protein) :: 4 Pseudo Genes (ambiguous residues) :: 0 of 4 Pseudo Genes (frameshifted) :: 0 of 4 Pseudo Genes (incomplete) :: 4 of 4 Pseudo Genes (internal stop) :: 0 of 4 CRISPR Arrays :: 7REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,007 CDSs (total) :: 1,955 Genes (coding) :: 1,951 CDSs (with protein) :: 1,951 Genes (RNA) :: 52 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 2 Pseudo Genes (total) :: 4 CDSs (without protein) :: 4 Pseudo Genes (ambiguous residues) :: 0 of 4 Pseudo Genes (frameshifted) :: 0 of 4 Pseudo Genes (incomplete) :: 4 of 4 Pseudo Genes (internal stop) :: 0 of 4 CRISPR Arrays :: 7 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002838.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089495 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Pyrolobus fumarii 1A, DSM 11204 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 1 ref_biomaterial :: DSM 11204 biotic_relationship :: Free living trophic_level :: Chemolithoautotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02934 Type Strain :: Yes Greengenes ID :: 878 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (depth 3650 meters) Cell Shape :: Coccus-shaped Temperature Range :: Hyperthermophile Temperature Optimum :: 106C pH :: 5.5 Gram Staining :: Gram- Diseases :: None Phenotypes :: Barophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000223395.1-RS_2024_04_23 Annotation Date :: 04/23/2024 00:42:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,007 CDSs (total) :: 1,955 Genes (coding) :: 1,951 CDSs (with protein) :: 1,951 Genes (RNA) :: 52 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 2 Pseudo Genes (total) :: 4 CDSs (without protein) :: 4 Pseudo Genes (ambiguous residues) :: 0 of 4 Pseudo Genes (frameshifted) :: 0 of 4 Pseudo Genes (incomplete) :: 4 of 4 Pseudo Genes (internal stop) :: 0 of 4 CRISPR Arrays :: 7 ##Genome-Annotation-Data-END## COMPLETENESS: full length.