-- dump date   	20240506_001827
-- class       	Genbank::Contig
-- table       	contig_comment
-- id	comment
NC_009073.1	REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP000561.1.REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. LoweREFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu)REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-StanfordREFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNLREFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376)REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymerREFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747,REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398.REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,323REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,323 CDSs (total)                      :: 2,274REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,323 CDSs (total)                      :: 2,274 Genes (coding)                    :: 2,261REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,323 CDSs (total)                      :: 2,274 Genes (coding)                    :: 2,261 CDSs (with protein)               :: 2,261REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,323 CDSs (total)                      :: 2,274 Genes (coding)                    :: 2,261 CDSs (with protein)               :: 2,261 Genes (RNA)                       :: 49REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,323 CDSs (total)                      :: 2,274 Genes (coding)                    :: 2,261 CDSs (with protein)               :: 2,261 Genes (RNA)                       :: 49 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,323 CDSs (total)                      :: 2,274 Genes (coding)                    :: 2,261 CDSs (with protein)               :: 2,261 Genes (RNA)                       :: 49 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,323 CDSs (total)                      :: 2,274 Genes (coding)                    :: 2,261 CDSs (with protein)               :: 2,261 Genes (RNA)                       :: 49 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 46REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,323 CDSs (total)                      :: 2,274 Genes (coding)                    :: 2,261 CDSs (with protein)               :: 2,261 Genes (RNA)                       :: 49 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 46 ncRNAs                            :: 0REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,323 CDSs (total)                      :: 2,274 Genes (coding)                    :: 2,261 CDSs (with protein)               :: 2,261 Genes (RNA)                       :: 49 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 46 ncRNAs                            :: 0 Pseudo Genes (total)              :: 13REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,323 CDSs (total)                      :: 2,274 Genes (coding)                    :: 2,261 CDSs (with protein)               :: 2,261 Genes (RNA)                       :: 49 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 46 ncRNAs                            :: 0 Pseudo Genes (total)              :: 13 CDSs (without protein)            :: 13REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,323 CDSs (total)                      :: 2,274 Genes (coding)                    :: 2,261 CDSs (with protein)               :: 2,261 Genes (RNA)                       :: 49 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 46 ncRNAs                            :: 0 Pseudo Genes (total)              :: 13 CDSs (without protein)            :: 13 Pseudo Genes (ambiguous residues) :: 0 of 13REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,323 CDSs (total)                      :: 2,274 Genes (coding)                    :: 2,261 CDSs (with protein)               :: 2,261 Genes (RNA)                       :: 49 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 46 ncRNAs                            :: 0 Pseudo Genes (total)              :: 13 CDSs (without protein)            :: 13 Pseudo Genes (ambiguous residues) :: 0 of 13 Pseudo Genes (frameshifted)       :: 10 of 13REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,323 CDSs (total)                      :: 2,274 Genes (coding)                    :: 2,261 CDSs (with protein)               :: 2,261 Genes (RNA)                       :: 49 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 46 ncRNAs                            :: 0 Pseudo Genes (total)              :: 13 CDSs (without protein)            :: 13 Pseudo Genes (ambiguous residues) :: 0 of 13 Pseudo Genes (frameshifted)       :: 10 of 13 Pseudo Genes (incomplete)         :: 5 of 13REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,323 CDSs (total)                      :: 2,274 Genes (coding)                    :: 2,261 CDSs (with protein)               :: 2,261 Genes (RNA)                       :: 49 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 46 ncRNAs                            :: 0 Pseudo Genes (total)              :: 13 CDSs (without protein)            :: 13 Pseudo Genes (ambiguous residues) :: 0 of 13 Pseudo Genes (frameshifted)       :: 10 of 13 Pseudo Genes (incomplete)         :: 5 of 13 Pseudo Genes (internal stop)      :: 2 of 13REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,323 CDSs (total)                      :: 2,274 Genes (coding)                    :: 2,261 CDSs (with protein)               :: 2,261 Genes (RNA)                       :: 49 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 46 ncRNAs                            :: 0 Pseudo Genes (total)              :: 13 CDSs (without protein)            :: 13 Pseudo Genes (ambiguous residues) :: 0 of 13 Pseudo Genes (frameshifted)       :: 10 of 13 Pseudo Genes (incomplete)         :: 5 of 13 Pseudo Genes (internal stop)      :: 2 of 13 Pseudo Genes (multiple problems)  :: 4 of 13REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,323 CDSs (total)                      :: 2,274 Genes (coding)                    :: 2,261 CDSs (with protein)               :: 2,261 Genes (RNA)                       :: 49 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 46 ncRNAs                            :: 0 Pseudo Genes (total)              :: 13 CDSs (without protein)            :: 13 Pseudo Genes (ambiguous residues) :: 0 of 13 Pseudo Genes (frameshifted)       :: 10 of 13 Pseudo Genes (incomplete)         :: 5 of 13 Pseudo Genes (internal stop)      :: 2 of 13 Pseudo Genes (multiple problems)  :: 4 of 13 CRISPR Arrays                     :: 3REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,323 CDSs (total)                      :: 2,274 Genes (coding)                    :: 2,261 CDSs (with protein)               :: 2,261 Genes (RNA)                       :: 49 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 46 ncRNAs                            :: 0 Pseudo Genes (total)              :: 13 CDSs (without protein)            :: 13 Pseudo Genes (ambiguous residues) :: 0 of 13 Pseudo Genes (frameshifted)       :: 10 of 13 Pseudo Genes (incomplete)         :: 5 of 13 Pseudo Genes (internal stop)      :: 2 of 13 Pseudo Genes (multiple problems)  :: 4 of 13 CRISPR Arrays                     :: 3 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP000561.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 11/27/2023 22:43:30 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,323 CDSs (total)                      :: 2,274 Genes (coding)                    :: 2,261 CDSs (with protein)               :: 2,261 Genes (RNA)                       :: 49 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 46 ncRNAs                            :: 0 Pseudo Genes (total)              :: 13 CDSs (without protein)            :: 13 Pseudo Genes (ambiguous residues) :: 0 of 13 Pseudo Genes (frameshifted)       :: 10 of 13 Pseudo Genes (incomplete)         :: 5 of 13 Pseudo Genes (internal stop)      :: 2 of 13 Pseudo Genes (multiple problems)  :: 4 of 13 CRISPR Arrays                     :: 3 ##Genome-Annotation-Data-END## COMPLETENESS: full length.