-- dump date 20140620_020720 -- class Genbank::CDS -- table cds_note -- id note YP_004145096.1 TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; KEGG: xal:XALc_0001 probable chromosomal replication initiator protein DnaA; SMART: replication initiation factor DnaA; ATPase AAA YP_004145097.1 SMART: DNA polymerase III beta chain; TIGRFAM: DNA polymerase III subunit beta; KEGG: xac:XAC0002 DNA polymerase III subunit beta; PFAM: DNA polymerase III beta chain YP_004145098.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: smt:Smal_0003 recombination protein F; SMART: AAA ATPase YP_004145099.1 SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; TIGRFAM: DNA gyrase subunit beta; KEGG: xca:xccb100_0004 DNA gyrase subunit B; PFAM: DNA topoisomerase type IIsubunit alpha B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain-containing protein; DNA gyrase subunit B domain protein YP_004145100.1 PFAM: hypothetical protein; KEGG: sml:Smlt0006 transmembrane protease YP_004145101.1 PFAM: peptidase M48 Ste24p; KEGG: smt:Smal_0006 peptidase M48 Ste24p YP_004145102.1 PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: xal:XALc_0007 hypothetical protein YP_004145103.1 KEGG: xal:XALc_0008 energy transducer TonB protein; TIGRFAM: TonB family protein; PFAM: TonB domain YP_004145104.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: smt:Smal_0009 MotA/TolQ/ExbB proton channel YP_004145105.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: xca:xccb100_0010 macromolecule import protein YP_004145106.1 KEGG: xal:XALc_0011 Probable biopolymer transport ExbD. transmembrane protein; manually curated; PFAM: biopolymertransporter ExbD/TolR YP_004145107.1 TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; KEGG: smt:Smal_0014 pyridoxine 5'-phosphate synthase; PFAM: pyridoxal phosphate biosynthetic protein PdxJ YP_004145108.1 KEGG: xca:xccb100_0015 hypothetical protein YP_004145109.1 KEGG: xal:XALc_0015 probable cardiolipin synthetase protein; PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase YP_004145110.1 KEGG: xcc:XCC0015 hypothetical protein; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_004145111.1 PFAM: cupin; lipolytic protein G-D-S-L family; KEGG: xcv:XCV0155 hypothetical protein YP_004145112.1 KEGG: xcv:XCV0153 short chain dehydrogenase; TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR YP_004145113.1 KEGG: xca:xccb100_0168 5-keto-4-deoxyuronate isomerase; PFAM: KduI/IolB isomerase YP_004145114.1 KEGG: xcv:XCV0151 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_004145115.1 KEGG: xca:xccb100_0165 dicarboxylate transporter, large permease; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit YP_004145116.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: xcv:XCV0148 C4-dicarboxylate membrane transporter YP_004145117.1 PFAM: extracellular solute-binding protein, family 7; KEGG: xca:xccb100_0163 dicarboxylate transporter, periplasmic substate binding component YP_004145118.1 KEGG: xac:XAC0161 2-keto-4-pentenoate hydratase YP_004145119.1 KEGG: xca:xccb100_0161 exported acylaminoacyl-peptidase YP_004145120.1 PFAM: carboxylesterase type B; KEGG: xca:xccb100_0160 exported cholinesterase YP_004145121.1 KEGG: ote:Oter_4196 hypothetical protein YP_004145122.1 KEGG: xcv:XCV0150 xylosidase precursor; PFAM: glycoside hydrolase family 43 YP_004145123.1 PFAM: lipolytic protein G-D-S-L family; KEGG: xca:xccb100_0159 exported esterase YP_004145124.1 KEGG: xcb:XC_0127 hypothetical protein YP_004145125.1 KEGG: xcb:XC_0126 pectic acid lyase; region: Pec_lyase; pfam09492; TIGRFAM: pectate lyase; PFAM: Pectic acid lyase YP_004145126.1 KEGG: xcb:XC_0124 TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. ...; region: ligand_gated_channel; cd01347; TIGRFAM: TonB-dependent receptor; outer membrane insertion C-terminal signal; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004145127.1 KEGG: xcv:XCV0123 TonB-dependent outer membrane receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004145128.1 PFAM: PfkB domain protein; KEGG: xom:XOO_0027 2-keto-3-deoxygluconate kinase YP_004145129.1 KEGG: sml:Smlt4224 LuxR family two-component response regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_004145130.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sml:Smlt4225 two-component sensor histidine kinase YP_004145131.1 TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: xcb:XC_0108 homodimer interface; other site; SMART: Ku domain protein YP_004145132.1 KEGG: sml:Smlt2525 hypothetical protein YP_004145133.1 KEGG: sml:Smlt0048 aromatic amino acid aminotransferase; PFAM: aminotransferase class I and II YP_004145134.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: smt:Smal_0022 TonB-dependent receptor YP_004145135.1 KEGG: xca:xccb100_0449 hypothetical protein YP_004145136.1 TIGRFAM: phenylalanine-4-hydroxylase; KEGG: smt:Smal_0032 phenylalanine 4-monooxygenase; PFAM: Aromatic amino acid hydroxylase-like YP_004145137.1 KEGG: sml:Smlt0078 AsnC family transcriptional regulator; PFAM: transcription regulator AsnC-type-like; SMART: transcription regulator AsnC-type YP_004145138.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: slo:Shew_1706 glutathione-dependent formaldehyde-activating, GFA YP_004145139.1 PFAM: protein of unknown function DUF124; KEGG: xac:XAC0178 hypothetical protein YP_004145140.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: reh:H16_B1238 acid phosphatase; SMART: phosphoesterase PA-phosphatase related YP_004145141.1 PFAM: rhomboid family protein; KEGG: xac:XAC4366 hypothetical protein YP_004145142.1 TIGRFAM: 7-cyano-7-deazaguanine reductase; KEGG: sml:Smlt4277 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/nitrile oxidoreductase YP_004145143.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sml:Smlt0244 transmembrane protein YP_004145144.1 KEGG: xcv:XCV0287 alpha/beta family hydrolase YP_004145145.1 PFAM: AFG1-family ATPase; KEGG: smt:Smal_0204 AFG1-family ATPase YP_004145146.1 KEGG: smt:Smal_2932 hypothetical protein YP_004145147.1 KEGG: xca:xccb100_4178 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; ribonucleotide reductase large subunit domain protein YP_004145148.1 PFAM: ribonucleotide reductase; KEGG: xfn:XfasM23_0475 ribonucleotide-diphosphate reductase subunit beta YP_004145149.1 KEGG: xac:XAC4073 flavodoxin; TIGRFAM: ribonucleotide reductase-associated flavodoxin; PFAM: flavodoxin/nitric oxide synthase YP_004145150.1 KEGG: xop:PXO_02900 thioredoxin YP_004145151.1 PFAM: thioesterase superfamily protein; KEGG: xac:XAC4070 hypothetical protein YP_004145152.1 KEGG: xca:xccb100_2976 hypothetical protein YP_004145153.1 KEGG: xoo:XOO2842 chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_004145154.1 KEGG: xfn:XfasM23_1394 nicotinamidase; PFAM: isochorismatase hydrolase YP_004145155.1 KEGG: syf:Synpcc7942_0015 hydroxylase; PFAM: 2OG-Fe(II) oxygenase; SMART: prolyl 4-hydroxylase subunit alpha YP_004145156.1 PFAM: fructose-bisphosphate aldolase class-I; KEGG: mva:Mvan_3341 fructose-1,6-bisphosphate aldolase YP_004145157.1 PFAM: silent information regulator protein Sir2; KEGG: dia:Dtpsy_1690 silent information regulator protein Sir2 YP_004145158.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: xca:xccb100_0332 NADPH dehydrogenase YP_004145159.1 KEGG: smt:Smal_0213 formyltetrahydrofolate deformylase; TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein YP_004145160.1 PFAM: protein of unknown function DUF81; KEGG: smd:Smed_1748 hypothetical protein YP_004145161.1 TIGRFAM: amidohydrolase; KEGG: xca:xccb100_3969 peptidase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_004145162.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: xcv:XCV0282 extracellular nuclease YP_004145163.1 PFAM: cytochrome C class I; KEGG: smt:Smal_0200 cytochrome c class I YP_004145164.1 PFAM: glycoside hydrolase; KEGG: xcv:XCV1823 glucan 1,4-beta-glucosidase precursor YP_004145165.1 KEGG: xca:xccb100_2488 glucose or galactose:Na+ symporter; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter YP_004145166.1 KEGG: sml:Smlt2568 LacI-family transcriptional regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_004145167.1 PFAM: pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: smt:Smal_0095 indolepyruvate ferredoxin oxidoreductase YP_004145168.1 KEGG: xac:XAC0190 hypothetical protein YP_004145169.1 SMART: prolyl 4-hydroxylase subunit alpha; KEGG: rce:RC1_2583 hypothetical protein YP_004145170.1 PFAM: hypothetical protein; KEGG: xal:XALc_3 hypothetical protein YP_004145171.1 KEGG: smt:Smal_0097 ATPase AAA central domain protein; PFAM: ATPase AAA; SMART: ATPase AAA YP_004145172.1 KEGG: xca:xccb100_0193 ParA family partition protein YP_004145173.1 PFAM: phosphoglycerate mutase; KEGG: xca:xccb100_0194 phosphoglycerate mutase family enzyme YP_004145174.1 PFAM: YceI family protein; KEGG: smt:Smal_0100 YceI family protein YP_004145175.1 KEGG: xal:XALc_3100 phospholipase protein; PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase YP_004145176.1 PFAM: thioesterase superfamily protein; KEGG: xac:XAC0196 hypothetical protein YP_004145177.1 KEGG: sml:Smlt0144 transmembrane acetyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_004145178.1 KEGG: xca:xccb100_0199 conserved esterase/lipase/thioesterase family enzyme YP_004145179.1 PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: xal:XALc_3096 hypothetical protein YP_004145180.1 PFAM: PEBP family protein; KEGG: xop:PXO_03572 hypothetical protein YP_004145181.1 PFAM: bacitracin resistance protein BacA; KEGG: xac:XAC0203 undecaprenyl pyrophosphate phosphatase YP_004145182.1 KEGG: xca:xccb100_0205 glutamate-ammonia ligase; TIGRFAM: glutamine synthetase; PFAM: glutamine synthetase; glutamine synthetase beta-Grasp YP_004145183.1 PFAM: nitrogen regulatory protein P-II; KEGG: xac:XAC0205 nitrogen regulatory protein P-II YP_004145184.1 KEGG: smt:Smal_0111 ammonium transporter; TIGRFAM: ammonium transporter; PFAM: ammonium transporter YP_004145185.1 KEGG: xac:XAC3860 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2 YP_004145186.1 KEGG: xcb:XC_0197 G-X-G motif; other site; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_004145187.1 TIGRFAM: nitrogen regulation protein NR(I); PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; KEGG: xca:xccb100_0209 two-component system nitrogen regulatory protein; SMART: response regulator receiver; ATPase AAA YP_004145188.1 PFAM: superoxide dismutase copper/zinc binding; KEGG: sml:Smlt0160 superoxide dismutase [Cu-Zn] YP_004145189.1 KEGG: xca:xccb100_0214 hypothetical protein YP_004145190.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: sml:Smlt0164 acetyl-CoA acetyltransferase; PFAM: thiolase-like YP_004145191.1 KEGG: bja:bll5619 hypothetical protein YP_004145192.1 PFAM: HemY domain protein; KEGG: xal:XALc_3085 porphyrin biosynthesis protein YP_004145193.1 KEGG: xac:XAC0215 hypothetical protein YP_004145194.1 PFAM: uroporphyrinogen III synthase HEM4; KEGG: xal:XALc_3083 uroporphyrinogen-III synthase protein YP_004145195.1 KEGG: xac:XAC0218 hypothetical protein; TIGRFAM: thioesterase domain protein; PFAM: thioesterase YP_004145196.1 KEGG: xal:XALc_3081 hypothetical protein YP_004145197.1 KEGG: xca:xccb100_0223 membrane-anchored phosphatase / sulfurtransferase family enzyme; PFAM: rhodanese; SMART: rhodanese YP_004145198.1 KEGG: xop:PXO_03970 preprotein translocase subunit SecB; TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB YP_004145199.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: sml:Smlt0172 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_004145200.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: cpi:Cpin_0352 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004145201.1 KEGG: bth:BT_0186 thiol:disulfide interchange protein DsbD precursor YP_004145202.1 KEGG: cpi:Cpin_0350 cytochrome-c peroxidase; PFAM: Di-haem cytochrome C peroxidase YP_004145203.1 KEGG: xac:XAC0534 C-type cytochrome biogenesis protein (copper tolerance) YP_004145204.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: xal:XALc_0315 redoxin protein YP_004145205.1 PFAM: YceI family protein; KEGG: xac:XAC0555 hypothetical protein YP_004145206.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: mfa:Mfla_1186 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004145207.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: smt:Smal_3209 transcriptional regulator CysB-like protein YP_004145208.1 KEGG: smt:Smal_0144 hypothetical protein YP_004145209.1 KEGG: sml:Smlt0200 tRNA/rRNA methyltransferase; TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU) YP_004145210.1 KEGG: xcb:XC_0220 hypothetical protein YP_004145211.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: slt:Slit_0391 short-chain dehydrogenase/reductase SDR YP_004145212.1 PFAM: peptidase M16 domain protein; KEGG: smt:Smal_0165 peptidase M16 domain protein YP_004145213.1 KEGG: xal:XALc_3074 hypothetical protein YP_004145214.1 KEGG: xca:xccb100_0233 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_004145215.1 KEGG: plt:Plut_1894 YgfB and YecA; TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein YP_004145216.1 PFAM: alpha/beta hydrolase fold; KEGG: sml:Smlt0206 haloalkane dehalogenase YP_004145217.1 PFAM: protein of unknown function UPF0153; KEGG: sml:Smlt0207 ferredoxin YP_004145218.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sml:Smlt0208 peptide synthase YP_004145219.1 KEGG: sml:Smlt0209 NAD(P)H dehydrogenase YP_004145220.1 PFAM: protein of unknown function DUF1328; KEGG: sml:Smlt0210 hypothetical protein YP_004145221.1 PFAM: sterol-binding domain protein; KEGG: xal:XALc_3067 hypothetical protein YP_004145222.1 KEGG: xal:XALc_3066 Probable ubiquinone biosynthesis ubib. transmembrane protein; TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC transporter YP_004145223.1 PFAM: peptidase M16 domain protein; KEGG: reu:Reut_B5316 peptidase M16, C-terminal:peptidase M16, N-terminal YP_004145224.1 PFAM: pseudouridine synthase; KEGG: xca:xccb100_0247 pseudouridylate synthase YP_004145225.1 PFAM: class I peptide chain release factor; KEGG: rpi:Rpic_3102 peptidyl-tRNA hydrolase domain protein YP_004145226.1 KEGG: smt:Smal_0180 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_004145227.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: smt:Smal_1562 deoxyribodipyrimidine photo-lyase YP_004145228.1 KEGG: npu:Npun_R2031 major facilitator transporter YP_004145229.1 KEGG: dac:Daci_3975 hypothetical protein YP_004145230.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: xac:XAC0255 transcriptional regulator YP_004145231.1 TIGRFAM: malate synthase A; KEGG: sml:Smlt0231 malate synthase; PFAM: malate synthase family protein YP_004145232.1 KEGG: smt:Smal_0189 isocitrate lyase; TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase YP_004145233.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; cyclic nucleotide-binding; KEGG: xal:XALc_3047 signal transduction protein; SMART: GGDEF domain containing protein; cyclic nucleotide-binding YP_004145234.1 SMART: Tetratricopeptide repeat; KEGG: xcb:XC_0250 PEP-Cterm system TPR-repeat lipoprotein; region: PEP_TPR_lipo; TIGR02917 YP_004145235.1 KEGG: xca:xccb100_0263 hypothetical protein YP_004145236.1 KEGG: xcv:XCV0269 hypothetical protein; TIGRFAM: SagB-type dehydrogenase domain; PFAM: nitroreductase YP_004145237.1 TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; KEGG: xal:XALc_0359 hypothetical competence related protein; SMART: ATPase AAA YP_004145238.1 PFAM: protein of unknown function DUF526; KEGG: sml:Smlt4371 hypothetical protein YP_004145239.1 PFAM: nitrogen regulatory protein P-II; KEGG: smt:Smal_3772 nitrogen regulatory protein P-II YP_004145240.1 PFAM: aminoglycoside phosphotransferase; KEGG: xcv:XCV4042 kinase YP_004145241.1 KEGG: xca:xccb100_4056 spermidine synthase; TIGRFAM: spermidine synthase; PFAM: Spermine synthase YP_004145242.1 KEGG: xcb:XC_3953 type III pyridoxal 5-phosphate (PLP)-dependent enzymes; region: PLPDE_III; cl00261; TIGRFAM: arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_004145243.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: smt:Smal_0278 short-chain dehydrogenase/reductase SDR YP_004145244.1 PFAM: sporulation domain-containing protein; KEGG: xcc:XCC3862 hypothetical protein YP_004145245.1 TIGRFAM: arginyl-tRNA synthetase; KEGG: sml:Smlt0398 arginyl-tRNA synthetase YP_004145246.1 PFAM: protein of unknown function DUF1697; KEGG: pde:Pden_1076 hypothetical protein YP_004145247.1 KEGG: xca:xccb100_4044 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC YP_004145248.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; KEGG: xom:XOO_0463 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein YP_004145249.1 TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; KEGG: xom:XOO_0464 deoxyuridine 5'-triphosphate nucleotidohydrolase; PFAM: deoxyUTP pyrophosphatase YP_004145250.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; KEGG: xcv:XCV4025 phosphomannomutase YP_004145251.1 KEGG: xca:xccb100_4032 hypothetical protein YP_004145252.1 TIGRFAM: orotate phosphoribosyltransferase; KEGG: xca:xccb100_4031 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_004145253.1 TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; KEGG: xca:xccb100_4030 exodeoxyribonuclease III; PFAM: endonuclease/exonuclease/phosphatase YP_004145254.1 PFAM: major facilitator superfamily MFS_1; KEGG: xcv:XCV4014 peptide-acetyl-coenzyme A transporter family protein YP_004145255.1 KEGG: sml:Smlt0414 hypothetical protein YP_004145256.1 KEGG: smt:Smal_1177 hypothetical protein YP_004145257.1 KEGG: app:CAP2UW1_2573 Appr-1-p processing domain protein; PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein YP_004145258.1 KEGG: smt:Smal_0741 peptidase T2 asparaginase 2; PFAM: peptidase T2 asparaginase 2 YP_004145259.1 PFAM: protein of unknown function UPF0075; KEGG: xca:xccb100_4027 anhydro-N-acetylmuramic acid kinase YP_004145260.1 PFAM: peptidase M23; KEGG: smt:Smal_0299 peptidase M23 YP_004145261.1 KEGG: smt:Smal_0300 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein YP_004145262.1 PFAM: hypothetical protein; KEGG: xcv:XCV0005 membrane protease YP_004145263.1 KEGG: xca:xccb100_4021 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Proline dehydrogenase; aldehyde dehydrogenase YP_004145264.1 KEGG: lbf:LBF_0402 hypothetical protein YP_004145265.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; helix-turn-helix- domain containing protein AraC type; KEGG: xca:xccb100_3237 AraC family transcriptional regulator; SMART: Helix-turn-helix, AraC domain; PAS domain containing protein YP_004145266.1 KEGG: xal:XALc_0399 hypothetical protein; manually curated; PFAM: protein of unknown function DUF2244, transmembrane YP_004145267.1 KEGG: xac:XAC3888 cytochrome C oxidase subunit II; TIGRFAM: cytochrome C oxidase subunit II; PFAM: cytochrome C oxidase subunit II; cytochrome C oxidase subunit II transmembrane region YP_004145268.1 KEGG: xop:PXO_04020 cytochrome C oxidase subunit I; TIGRFAM: cytochrome C oxidase subunit I; PFAM: cytochrome C oxidase subunit I YP_004145269.1 KEGG: xal:XALc_0402 hypothetical protein YP_004145270.1 PFAM: cytochrome C oxidase assembly protein CtaG/Cox11; KEGG: xac:XAC3885 cytochrome C oxidase assembly protein YP_004145271.1 PFAM: cytochrome C oxidase subunit III; KEGG: smt:Smal_0314 cytochrome C oxidase subunit III YP_004145272.1 KEGG: xal:XALc_0405 hypothetical protein YP_004145273.1 KEGG: xal:XALc_0406 hypothetical protein YP_004145274.1 KEGG: xop:PXO_04026 hypothetical protein YP_004145275.1 PFAM: cytochrome oxidase assembly; KEGG: xcv:XCV3998 cytochrome oxidase assembly protein YP_004145276.1 KEGG: xal:XALc_0409 cytochrome C oxidase assembly factor protein; TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase YP_004145277.1 KEGG: cak:Caul_5326 beta-lactamase domain-containing protein YP_004145278.1 KEGG: sml:Smlt0438 hypothetical protein YP_004145279.1 PFAM: integral membrane protein TerC; KEGG: afw:Anae109_0052 integral membrane protein TerC YP_004145280.1 TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; TOPRIM domain-containing protein; DNA primase, DnaB-helicase binding domain; DNA primase DnaG DnaB-binding; KEGG: xac:XAC3876 DNA primase; SMART: DNA primase DnaG DnaB-binding; Toprim sub domain-containing protein YP_004145281.1 KEGG: xcv:XCV3993 ribonuclease BN; TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN YP_004145282.1 PFAM: GCN5-related N-acetyltransferase; KEGG: scl:sce1010 acetyltransferase protein YP_004145283.1 KEGG: psa:PST_0929 hypothetical protein YP_004145284.1 PFAM: beta-lactamase; KEGG: psa:PST_0928 beta-lactamase YP_004145285.1 KEGG: acd:AOLE_18860 hypothetical protein YP_004145286.1 KEGG: xca:xccb100_4003 hypothetical protein YP_004145287.1 KEGG: smt:Smal_0326 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21 YP_004145288.1 TIGRFAM: metalloendopeptidase, glycoprotease family; KEGG: sml:Smlt0445 DNA-binding/iron metalloprotein/AP endonuclease; PFAM: peptidase M22 glycoprotease YP_004145289.1 KEGG: xac:XAC3870 dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase YP_004145290.1 PFAM: MscS Mechanosensitive ion channel; KEGG: sml:Smlt0448 mechanosensitive ion channel YP_004145291.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: alv:Alvin_0463 protein of unknown function DUF404 YP_004145292.1 PFAM: protein of unknown function DUF403; KEGG: tgr:Tgr7_1013 protein of unknown function DUF403 YP_004145293.1 PFAM: 20S proteasome A and subunit betas; KEGG: sml:Smlt4032 hypothetical protein YP_004145294.1 KEGG: sml:Smlt4031 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK YP_004145295.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xal:XALc_0833 pteridin reductase protein YP_004145296.1 PFAM: protein of unknown function DUF185; KEGG: xcv:XCV0749 hypothetical protein YP_004145297.1 PFAM: VanZ family protein; KEGG: sml:Smlt4028 transmembrane drug resistance protein YP_004145298.1 KEGG: smt:Smal_3427 beta-N-acetylhexosaminidase; PFAM: glycoside hydrolase, family 20, catalytic core YP_004145299.1 KEGG: ccs:CCNA_00455 N-acetyl-glucosamine/N-acetyl-chitin oligosaccharide outer membrane transporter NagA; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004145300.1 TIGRFAM: glucokinase; KEGG: xal:XALc_2215 probable glucokinase protein; PFAM: glucokinase YP_004145301.1 KEGG: smt:Smal_3424 glucose/galactose transporter; TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1 YP_004145302.1 KEGG: xca:xccb100_0785 transcriptional regulator, LacI family; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_004145303.1 KEGG: xal:XALc_0840 glucosamine-6-phosphate deaminase protein; PFAM: sugar isomerase (SIS) YP_004145304.1 TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; KEGG: smt:Smal_3421 N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase YP_004145305.1 KEGG: sml:Smlt4019 transmembrane protein YP_004145306.1 KEGG: mxa:MXAN_5731 ECF subfamily RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2 YP_004145307.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: cvi:CV_2781 hypothetical protein YP_004145308.1 KEGG: pha:PSHAa0160 hypothetical protein YP_004145309.1 KEGG: smd:Smed_1020 CrcB protein; TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein YP_004145310.1 PFAM: YCII-related; KEGG: reu:Reut_B3488 DGPFAETKE YP_004145311.1 PFAM: protein of unknown function DUF1428; KEGG: dac:Daci_4031 hypothetical protein YP_004145312.1 PFAM: polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: xca:xccb100_0790 multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase YP_004145313.1 KEGG: smt:Smal_3413 lytic transglycosylase catalytic; manually curated; PFAM: lytic transglycosylase catalytic YP_004145314.1 PFAM: protein of unknown function DUF81; KEGG: tin:Tint_2083 protein of unknown function DUF81 YP_004145315.1 KEGG: xal:XALc_2867 hypothetical protein YP_004145316.1 KEGG: xal:XALc_2866 hypothetical protein YP_004145317.1 PFAM: SUA5/yciO/yrdC domain; KEGG: xal:XALc_2865 translation factor (SUA5) protein YP_004145318.1 SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; TIGRFAM: DNA topoisomerase I; KEGG: sml:Smlt4184 DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein YP_004145319.1 PFAM: RDD domain containing protein; KEGG: xac:XAC3806 hypothetical protein YP_004145320.1 KEGG: xcv:XCV3930 PilA-related fimbrial protein YP_004145321.1 PFAM: Interferon-induced transmembrane protein; KEGG: fal:FRAAL0658 hypothetical protein YP_004145322.1 PFAM: protein of unknown function DUF494; KEGG: xca:xccb100_3933 hypothetical protein YP_004145323.1 KEGG: xal:XALc_2860 dna processing chain a protein; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein YP_004145324.1 KEGG: xal:XALc_2859 peptidoglycan-binding protein, LysM containing domain; PFAM: peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding LysM YP_004145325.1 KEGG: smt:Smal_3585 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_004145326.1 KEGG: xcb:XC_3818 formyl transferase, C-terminal domain; region: Formyl_trans_C; pfam02911; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase YP_004145327.1 KEGG: xcc:XCC3747 Sun protein; TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44 YP_004145328.1 PFAM: glycosyl transferase family 39; KEGG: xcv:XCV3923 dolichyl-phosphate mannosyltransferase YP_004145329.1 PFAM: O-antigen polymerase; KEGG: xcv:XCV3922 cell surface polysaccharide polymerase/ligase YP_004145330.1 KEGG: smt:Smal_3972 major facilitator superfamily MFS_1 YP_004145331.1 KEGG: smt:Smal_3973 hypothetical protein YP_004145332.1 KEGG: xca:xccb100_4261 acetyl-CoA synthetase; TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase YP_004145333.1 KEGG: xac:XAC4180 two-component system regulatory protein; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver YP_004145334.1 KEGG: sml:Smlt4133 glucosyltransferase MdoH YP_004145335.1 KEGG: sml:Smlt4132 carboxylesterase; PFAM: phospholipase/carboxylesterase YP_004145336.1 KEGG: smt:Smal_3531 LytTR family transcriptional regulator; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver YP_004145337.1 KEGG: sml:Smlt4129 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: porphobilinogen deaminase YP_004145338.1 KEGG: xal:XALc_2584 helix-turn-helix transcriptional regulator protein YP_004145339.1 KEGG: xac:XAC0627 hypothetical protein YP_004145340.1 KEGG: xcv:XCV0685 prolyl oligopeptidase precursor; manually curated; PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller YP_004145341.1 KEGG: xca:xccb100_0694 exported protease/peptidase; PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller YP_004145342.1 PFAM: protein of unknown function DUF454; KEGG: xca:xccb100_0695 hypothetical protein YP_004145343.1 KEGG: xac:XAC0633 hypothetical protein YP_004145344.1 KEGG: xcv:XCV0689 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase YP_004145345.1 PFAM: protein of unknown function DUF484; KEGG: sml:Smlt4078 hypothetical protein YP_004145346.1 KEGG: xca:xccb100_0699 site-specific tyrosine recombinase XerC; TIGRFAM: tyrosine recombinase XerC; PFAM: integrase family protein; integrase YP_004145347.1 KEGG: aav:Aave_4018 hypothetical protein YP_004145348.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: aav:Aave_4017 alcohol dehydrogenase YP_004145349.1 KEGG: cfl:Cfla_2459 MazG nucleotide pyrophosphohydrolase YP_004145350.1 KEGG: mpt:Mpe_A1700 hypothetical protein YP_004145351.1 PFAM: 20S proteasome A and subunit betas; KEGG: smt:Smal_3472 ATP-dependent protease peptidase subunit YP_004145352.1 TIGRFAM: heat shock protein HslVU, ATPase HslU; PFAM: ATPase AAA; KEGG: smt:Smal_3471 ATP-dependent protease ATP-binding subunit HslU; SMART: ATPase AAA YP_004145353.1 KEGG: lif:LinJ14.1200 kinesin K39 YP_004145354.1 KEGG: hch:HCH_06956 nucleoside-diphosphate-sugar epimerase YP_004145355.1 KEGG: swi:Swit_2436 hypothetical protein YP_004145356.1 PFAM: metallophosphoesterase; KEGG: xcb:XC_2953 metal binding site; other site YP_004145357.1 KEGG: xca:xccb100_3014 ATP-dependent helicase, probable; PFAM: DEAD/DEAH box helicase; DEAD/DEAH box helicase domain protein; helicase; SMART: DEAD-like helicase ; helicase domain protein YP_004145358.1 PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: xcv:XCV1394 ATP-dependent DNA ligase YP_004145359.1 KEGG: xca:xccb100_3011 mRNA 3'-end processing factor YP_004145360.1 KEGG: xcb:XC_0670 catalytic motif; other site; PFAM: CMP/dCMP deaminase zinc-binding YP_004145361.1 KEGG: smt:Smal_3460 ubiquinone/menaquinone biosynthesis methyltransferase; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase YP_004145362.1 PFAM: peptidase M1 membrane alanine aminopeptidase ; Leukotriene A4 hydrolase; KEGG: xcb:XC_0676 leukotriene A4 hydrolase, C-terminal; region: Leuk-A4-hydro_C; pfam09127 YP_004145363.1 KEGG: xal:XALc_2565 lipoprotein YP_004145364.1 KEGG: avn:Avin_19510 hypothetical protein YP_004145365.1 PFAM: PfkB domain protein; KEGG: xcv:XCV0716 carbohydrate kinase YP_004145366.1 KEGG: sml:Smlt4059 rod shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl YP_004145367.1 KEGG: xcb:XC_0692 rod shape-determining protein MreC; region: MreC; pfam04085; TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC YP_004145368.1 KEGG: xcb:XC_0693 rod shape-determining protein MreD; region: MreD; cl01087; TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD YP_004145369.1 TIGRFAM: penicillin-binding protein 2; KEGG: xal:XALc_0808 probable penicillin-binding protein; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_004145370.1 KEGG: xcv:XCV0721 rod shape-determining protein; TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein YP_004145371.1 TIGRFAM: lytic murein transglycosylase B; KEGG: xca:xccb100_0739 murein-degrading transglycosylase YP_004145372.1 KEGG: sml:Smlt4051 exported rare lipoprotein A; TIGRFAM: lipoprotein A; PFAM: Rare lipoprotein A; sporulation domain-containing protein YP_004145373.1 KEGG: sml:Smlt4050 penicillin-binding protein precursor; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein YP_004145374.1 KEGG: xcb:XC_0710 curli production assembly/transport component CsgG; region: CsgG; cl00639 YP_004145375.1 PFAM: Curli production assembly/transport component CsgG; KEGG: xcb:XC_0710 curli production assembly/transport component CsgG; region: CsgG; cl00639 YP_004145376.1 PFAM: protein of unknown function DUF2219; KEGG: xca:xccb100_0742 hypothetical protein YP_004145377.1 PFAM: protein of unknown function DUF493; KEGG: xcv:XCV0727 hypothetical protein YP_004145378.1 TIGRFAM: lipoate-protein ligase B; KEGG: sml:Smlt4047 lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase YP_004145379.1 KEGG: xom:XOO_2241 hypothetical protein YP_004145380.1 KEGG: xop:PXO_00685 hypothetical protein YP_004145381.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: lipoic acid synthetase; KEGG: smt:Smal_3442 lipoyl synthase; PFAM: radical SAM domain protein YP_004145382.1 SMART: peptidase S41; PDZ/DHR/GLGF domain protein; TIGRFAM: carboxyl-terminal protease; KEGG: smt:Smal_3441 carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein YP_004145383.1 KEGG: xcv:XCV3810 AsnC family leucine-responsive regulatory protein; PFAM: transcription regulator AsnC-type-like; regulatory protein MarR; SMART: transcription regulator AsnC-type YP_004145384.1 PFAM: FAD dependent oxidoreductase; KEGG: psp:PSPPH_0223 D-amino acid dehydrogenase small subunit YP_004145385.1 TIGRFAM: alanine racemase; KEGG: xal:XALc_2934 probable alanine racemase protein; PFAM: alanine racemase domain protein YP_004145386.1 KEGG: rxy:Rxyl_2426 oxidoreductase, molybdopterin binding protein YP_004145387.1 PFAM: amidohydrolase; KEGG: gvi:glr3517 hypothetical protein YP_004145388.1 KEGG: xca:xccb100_3825 ribosomal RNA small subunit methyltransferase C; PFAM: methyltransferase small YP_004145389.1 PFAM: pseudouridine synthase; KEGG: smt:Smal_0451 pseudouridine synthase YP_004145390.1 KEGG: xca:xccb100_3823 HAD superfamily hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_004145391.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: app:CAP2UW1_3970 TonB-dependent siderophore receptor YP_004145392.1 KEGG: gau:GAU_1210 hypothetical protein YP_004145393.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xcb:XC_3707 Rossmann-fold NAD(P)(+)-binding proteins; region: NADB_Rossmann; cl09931 YP_004145394.1 PFAM: protein of unknown function DUF1415; KEGG: xac:XAC3675 hypothetical protein YP_004145395.1 PFAM: protein of unknown function DUF520; KEGG: xal:XALc_2923 hypothetical protein YP_004145396.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: xac:XAC3670 hypothetical protein YP_004145397.1 KEGG: sml:Smlt4088 DL-methionine transporter ATP-binding subunit; PFAM: ABC transporter; NIL domain; SMART: ATPase AAA YP_004145398.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: xal:XALc_2920 probable D-methionine abc transporter permease abc transporter permease YP_004145399.1 PFAM: NLPA lipoprotein; KEGG: xca:xccb100_3813 outer membrane lipoprotein YP_004145400.1 KEGG: xcv:XCV3784 hypothetical protein YP_004145401.1 KEGG: sal:Sala_2687 hypothetical protein YP_004145402.1 PFAM: OmpW family protein; KEGG: xac:XAC3664 outer membrane protein YP_004145403.1 KEGG: xac:XAC3661 dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein YP_004145404.1 KEGG: smt:Smal_3520 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; biotin/lipoyl attachment domain-containing protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_004145405.1 KEGG: xca:xccb100_3802 hypothetical protein YP_004145406.1 KEGG: xal:XALc_2913 hypothetical protein YP_004145407.1 KEGG: sml:Smlt4117 F0F1 ATP synthase subunit A; TIGRFAM: ATP synthase F0 subunit alpha; PFAM: H+transporting two-sector ATPase subunit alpha YP_004145408.1 KEGG: xom:XOO_0663 F0F1 ATP synthase subunit C; TIGRFAM: ATP synthase F0 C subunit; PFAM: H+transporting two-sector ATPase C subunit YP_004145409.1 KEGG: sml:Smlt4115 F0F1 ATP synthase subunit B; TIGRFAM: ATP synthase F0 subunit beta; PFAM: H+transporting two-sector ATPase B/B' subunit YP_004145410.1 KEGG: smt:Smal_3514 F0F1 ATP synthase subunit delta; TIGRFAM: ATP synthase F1 subunit delta; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit YP_004145411.1 KEGG: xal:XALc_2908 probable atp synthase, subunit alpha protein; TIGRFAM: ATP synthase F1 subunit alpha; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein YP_004145412.1 KEGG: xca:xccb100_3795 F0F1 ATP synthase subunit gamma; TIGRFAM: ATP synthase F1 subunit gamma; PFAM: H+transporting two-sector ATPase subunit gamma YP_004145413.1 TIGRFAM: ATP synthase F1 subunit beta; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; KEGG: xal:XALc_2906 probable atp synthase subunit beta protein; SMART: ATPase AAA YP_004145414.1 KEGG: smt:Smal_3510 F0F1 ATP synthase subunit epsilon; TIGRFAM: ATP synthase F1 subunit epsilon; PFAM: ATPase, F1 complex, delta/subunit epsilon-like YP_004145415.1 KEGG: gga:768739 hypothetical protein LOC768739 YP_004145416.1 TIGRFAM: anthranilate phosphoribosyltransferase; KEGG: xac:XAC0480 anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; glycosyl transferase, family 3-like YP_004145417.1 KEGG: xal:XALc_0283 probable indole-3-glycerol phosphate synthase protein; PFAM: indole-3-glycerol phosphate synthase YP_004145418.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: xcb:XC_0485 haloacid dehalogenase-like hydrolase; region: hydrolase; pfam00702 YP_004145419.1 KEGG: xfa:XF1540 cAMP-regulatory protein; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp YP_004145420.1 TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; KEGG: smt:Smal_3714 S-adenosylmethionine decarboxylase; PFAM: S-adenosylmethionine decarboxylase related YP_004145421.1 PFAM: small multidrug resistance protein; KEGG: reh:H16_A2604 membrane transporters of cations and cationic drugs YP_004145422.1 KEGG: xal:XALc_0289 hypothetical protein YP_004145423.1 KEGG: sml:Smlt4302 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13 YP_004145424.1 PFAM: ribosomal protein S9; KEGG: smt:Smal_3710 30S ribosomal protein S9 YP_004145425.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE2 domain protein; KEGG: bph:Bphy_3853 diguanylate cyclase; SMART: GGDEF domain containing protein YP_004145426.1 KEGG: mms:mma_1628 hypothetical protein YP_004145427.1 KEGG: tbd:Tbd_2045 cytochrome oxidase maturation protein cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type YP_004145428.1 KEGG: tbd:Tbd_2044 heavy metal translocating P-type ATPase; TIGRFAM: ATPase P; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; haloacid dehalogenase YP_004145429.1 KEGG: tgr:Tgr7_0637 FixH family protein YP_004145430.1 TIGRFAM: cytochrome C oxidase accessory protein CcoG; KEGG: aeh:Mlg_1877 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_004145431.1 KEGG: sml:Smlt1688 transmembrane protein YP_004145432.1 KEGG: tgr:Tgr7_0634 cytochrome C oxidase cbb3-type, subunit III; TIGRFAM: cytochrome C oxidase cbb3-type, subunit III; PFAM: cytochrome C class I YP_004145433.1 KEGG: mmb:Mmol_0543 Cbb3-type cytochrome oxidase component YP_004145434.1 KEGG: hse:Hsero_3202 cbb3-type cytochrome C oxidase subunit II transmembrane protein; TIGRFAM: cytochrome C oxidase cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO YP_004145435.1 TIGRFAM: cytochrome C oxidase cbb3-type, subunit I; KEGG: aeh:Mlg_1882 cbb3-type cytochrome C oxidase subunit I; PFAM: cytochrome C oxidase subunit I YP_004145436.1 PFAM: CoA-binding protein; GCN5-related N-acetyltransferase; KEGG: xac:XAC4077 hypothetical protein YP_004145437.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpe:RPE_3643 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004145438.1 KEGG: pag:PLES_45491 hypothetical protein; TIGRFAM: AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453 YP_004145439.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: app:CAP2UW1_3526 activator of HSP90 ATPase 1 family protein YP_004145440.1 KEGG: sml:Smlt3608 aconitate hydratase; TIGRFAM: 2-methylisocitrate dehydratase, Fe/S-dependent; PFAM: aconitate hydratase domain-containing protein YP_004145441.1 KEGG: ami:Amir_3178 transcriptional regulator, LuxR family YP_004145442.1 KEGG: pmy:Pmen_0658 azurin; TIGRFAM: azurin; PFAM: blue (type 1) copper domain protein YP_004145443.1 PFAM: electron transporter SCO1/SenC; KEGG: rso:RS03040 signal peptide protein YP_004145444.1 PFAM: protein of unknown function DUF323; KEGG: bmn:BMA10247_A1659 hypothetical protein YP_004145445.1 TIGRFAM: nitrite reductase, copper-containing; KEGG: mct:MCR_0135 nitrite reductase AniA/Msp78; PFAM: multicopper oxidase type 3; multicopper oxidase type 1 YP_004145446.1 KEGG: sml:Smlt3789 TonB dependent receptor; TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004145447.1 KEGG: azo:azo3085 hypothetical protein YP_004145448.1 KEGG: app:CAP2UW1_2137 hypothetical protein YP_004145450.1 KEGG: pla:Plav_1005 hypothetical protein YP_004145451.1 PFAM: NnrS family protein; KEGG: smt:Smal_3397 NnrS family protein YP_004145452.1 KEGG: gbr:Gbro_1031 hypothetical protein YP_004145453.1 PFAM: methyltransferase type 12; KEGG: xcb:XC_1689 S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); region: AdoMet_MTases; cl12011 YP_004145454.1 PFAM: protein of unknown function UPF0153; KEGG: xca:xccb100_3892 hypothetical protein YP_004145455.1 KEGG: pla:Plav_1004 nitric-oxide reductase YP_004145456.1 KEGG: smt:Smal_2229 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide-binding YP_004145457.1 TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; radical SAM protein; KEGG: sml:Smlt1690 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_004145458.1 KEGG: mul:MUL_3590 transmembrane transporter YP_004145459.1 KEGG: xcv:XCV2090 response regulator NasT; PFAM: ANTAR domain protein; response regulator receiver; SMART: response regulator receiver YP_004145460.1 KEGG: xca:xccb100_2305 nitrate ABC transporter substrate-binding protein YP_004145461.1 PFAM: major facilitator superfamily MFS_1; KEGG: xcc:XCC2006 nitrate transporter YP_004145462.1 PFAM: formate/nitrite transporter; KEGG: pde:Pden_4450 formate/nitrite transporter YP_004145463.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_05117 histone acetyltransferase HPA2-like acetyltransferase YP_004145464.1 KEGG: xca:xccb100_2307 nitrite reductase (NAD(P)H) large subunit; TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region YP_004145465.1 KEGG: xcv:XCV2094 nitrite reductase [NAD(P)H] small subunit; TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain YP_004145466.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: xcb:XC_2175 BFD-like [2Fe-2S] binding domain; region: Fer2_BFD; cl01093 YP_004145467.1 KEGG: xcv:XCV2096 siroheme synthase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_004145468.1 PFAM: periplasmic nitrate reductase NapE; KEGG: sde:Sde_0082 hypothetical protein YP_004145469.1 KEGG: rsq:Rsph17025_3224 hypothetical protein YP_004145470.1 PFAM: NapD family protein; KEGG: azl:AZL_002690 periplasmic nitrate reductase YP_004145471.1 KEGG: bpa:BPP2702 nitrate reductase catalytic subunit; TIGRFAM: periplasmic nitrate reductase, large subunit; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region YP_004145472.1 PFAM: nitrate reductase cytochrome C subunit (NapB); KEGG: bbr:BB2801 diheme cytochrome C precursor YP_004145473.1 KEGG: spl:Spea_2425 NapC/NirT family periplasmic nitrate (or nitrite) reductase C-type cytochrome; TIGRFAM: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; PFAM: NapC/NirT cytochrome C domain protein YP_004145474.1 PFAM: NUDIX hydrolase; KEGG: sml:Smlt4299 dinucleoside polyphosphate hydrolase YP_004145475.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: xal:XALc_0295 bacterioferritin-associated ferredoxin protein YP_004145476.1 KEGG: smt:Smal_3707 bacterioferritin; TIGRFAM: bacterioferritin; PFAM: ferritin YP_004145477.1 KEGG: xal:XALc_0297 hypothetical two-component system sensor-response regulator hybrid protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein YP_004145478.1 KEGG: xca:xccb100_0512 two-component system response regulator; PFAM: EAL domain protein; response regulator receiver; GGDEF domain containing protein; SMART: response regulator receiver; GGDEF domain containing protein; EAL domain protein YP_004145479.1 KEGG: smt:Smal_3704 hypothetical protein YP_004145480.1 KEGG: xal:XALc_0299 hypothetical protein YP_004145481.1 PFAM: protein of unknown function DUF583; KEGG: xac:XAC0498 hypothetical protein YP_004145482.1 KEGG: xcv:XCV0534 iron-sulfur cluster insertion protein ErpA; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein YP_004145483.1 KEGG: xcb:XC_0501 metal binding site; other site; PFAM: NUDIX hydrolase; NADH pyrophosphatase-like ; Zinc ribbon NADH pyrophosphatase YP_004145484.1 KEGG: xac:XAC0504 transmembrane protein YP_004145485.1 KEGG: xom:XOO_0493 hypothetical protein YP_004145486.1 PFAM: Interferon-induced transmembrane protein; KEGG: xcv:XCV0540 hypothetical protein YP_004145487.1 KEGG: sml:Smlt4284 major facilitator superfamily transmembrane protein; PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; SMART: phospholipid/glycerol acyltransferase YP_004145488.1 PFAM: extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: mjl:Mjls_0759 extradiol ring-cleavage dioxygenase III subunit B YP_004145489.1 TIGRFAM: amidohydrolase; KEGG: smt:Smal_3688 amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_004145490.1 PFAM: aminotransferase class I and II; KEGG: cak:Caul_0727 aminotransferase class I and II YP_004145491.1 TIGRFAM: phosphoribosylamine/glycine ligase; KEGG: xal:XALc_0306 probable phosphoribosylamine--glycine ligase (GarS) (glycinamideribonucleotide synthetase) (phosphoribosylglycinamide synthetase) protein; PFAM: phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; phosphoribosylglycinamide synthetase, N-domain; phosphoribosylglycinamide synthetase, C-domain YP_004145492.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bbr:BB3321 hypothetical protein YP_004145493.1 SMART: AICARFT/IMPCHase bienzyme formylation region; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; KEGG: smt:Smal_3662 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein YP_004145494.1 PFAM: helix-turn-helix Fis-type; KEGG: xca:xccb100_0538 DNA-binding protein fis YP_004145495.1 KEGG: smt:Smal_3652 ribosomal protein L11 methyltransferase; TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase YP_004145496.1 KEGG: xcv:XCV0563 acetyl-CoA carboxylase biotin carboxylase subunit; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein YP_004145497.1 manually curated; KEGG: xcv:XCV0564 hypothetical protein YP_004145498.1 KEGG: sml:Smlt4240 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein YP_004145499.1 TIGRFAM: 3-dehydroquinate dehydratase, type II; KEGG: sml:Smlt4239 3-dehydroquinate dehydratase; PFAM: dehydroquinase class II YP_004145500.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: sml:Smlt4219 thioredoxin-related protein YP_004145501.1 KEGG: xcv:XCV0567 C-type cytochrome biogenesis protein; PFAM: cytochrome C biogenesis protein transmembrane region YP_004145502.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: xac:XAC0535 periplasmic divalent cation tolerance protein YP_004145503.1 PFAM: chaperonin Cpn10; KEGG: see:SNSL254_p_0146 10 kDa chaperonin GroS YP_004145504.1 KEGG: xcv:XCV0571 chaperonin GroEL; TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1 YP_004145505.1 PFAM: Hep_Hag repeat-containing protein; Haemagluttinin domain protein; KEGG: xom:XOO_0620 outer membrane protein YP_004145506.1 KEGG: rfr:Rfer_2700 hypothetical protein YP_004145507.1 KEGG: ske:Sked_11390 ribonuclease, Rne/Rng family YP_004145508.1 KEGG: gau:GAU_3399 serine/threonine protein kinase; PFAM: serine/threonine-protein kinase-like domain; Tetratricopeptide TPR_1 repeat-containing protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; Tetratricopeptide repeat YP_004145509.1 TIGRFAM: RNA polymerase sigma factor; RNA polymerase sigma factor, sigma-70 family; KEGG: sus:acid_5080 ECF subfamily RNA polymerase sigma-24 factor YP_004145510.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: xca:xccb100_0564 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_004145511.1 KEGG: sml:Smlt0473 glutamate-ammonia-ligase adenylyltransferase; PFAM: glutamate-ammonia ligase adenylyltransferase; GlnD PII-uridylyltransferase YP_004145512.1 PFAM: protein of unknown function DUF1022; KEGG: xal:XALc_0329 hypothetical protein YP_004145513.1 PFAM: nitroreductase; KEGG: sml:Smlt0482 hypothetical protein YP_004145514.1 PFAM: YceI family protein; KEGG: xca:xccb100_0586 conserved exported protein YP_004145515.1 PFAM: Zinc finger, CHCC-type; KEGG: sml:Smlt3934 hypothetical protein YP_004145516.1 PFAM: glycosyl transferase group 1; KEGG: xca:xccb100_0856 hypothetical protein YP_004145517.1 PFAM: O-antigen polymerase; KEGG: xcb:XC_0825 O-antigen ligase; region: Wzy_C; cl04850 YP_004145518.1 manually curated; TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; KEGG: xal:XALc_0745 probable lipid a biosynthesis lauroyl acyltransferase protein; PFAM: lipid A biosynthesis acyltransferase YP_004145519.1 PFAM: 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; KEGG: smt:Smal_3345 3-deoxy-D-manno-octulosonic-acid transferase YP_004145520.1 KEGG: sml:Smlt3928 outer membrane protein; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein YP_004145521.1 KEGG: sml:Smlt3927 protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_004145522.1 PFAM: regulatory protein TetR; KEGG: xal:XALc_0749 TetR family transcriptional regulator. transcription regulator protein YP_004145523.1 KEGG: sml:Smlt3925 RND/Acr family transmembrane transporter; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: hemolysin D YP_004145524.1 PFAM: acriflavin resistance protein; KEGG: sml:Smlt3924 drug-resistance cell envelope-related protein YP_004145525.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: xca:xccb100_0865 LysR family transcriptional regulator YP_004145526.1 KEGG: xcv:XCV3586 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain-containing protein YP_004145527.1 KEGG: pmy:Pmen_2722 isopropylmalate isomerase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain-containing protein YP_004145528.1 KEGG: mms:mma_1454 glutamate dehydrogenase; PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region YP_004145529.1 TIGRFAM: 3-isopropylmalate dehydrogenase; KEGG: xal:XALc_0751 probable 3-isopropylmalate dehydrogenase protein; PFAM: isocitrate/isopropylmalate dehydrogenase YP_004145530.1 KEGG: dgr:Dgri_GH17315 GH17315 gene product from transcript GH17315-RA YP_004145531.1 KEGG: xcv:XCV3583 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain-containing protein YP_004145532.1 PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: xcb:XC_0838 catalytic residue; other site YP_004145533.1 KEGG: sml:Smlt3915 acetolactate synthase isozyme II small subunit YP_004145534.1 KEGG: xca:xccb100_0873 acetolactate synthase 2 catalytic subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein YP_004145535.1 TIGRFAM: ketol-acid reductoisomerase; KEGG: xop:PXO_02605 ketol-acid reductoisomerase; PFAM: acetohydroxy acid isomeroreductase catalytic domain-containing protein; acetohydroxy acid isomeroreductase YP_004145536.1 TIGRFAM: dihydroxy-acid dehydratase; KEGG: xal:XALc_2985 probable dihydroxy-acid dehydratase protein; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_004145537.1 TIGRFAM: gamma-glutamyltransferase; KEGG: xca:xccb100_0875 exported gamma-glutamyltranspeptidase; PFAM: gamma-glutamyltranspeptidase YP_004145538.1 KEGG: cja:CJA_0244 1,4-beta mannosidase man5D YP_004145539.1 KEGG: xcv:XCV3577 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_004145540.1 KEGG: smt:Smal_3326 choline/carnitine/betaine transporter; TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter YP_004145541.1 KEGG: xal:XALc_0761 probable thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC YP_004145542.1 KEGG: bpa:BPP1756 lipoprotein YP_004145543.1 KEGG: smt:Smal_3324 ion transport 2 domain protein YP_004145544.1 manually curated; KEGG: slo:Shew_1176 SecC motif-containing protein YP_004145545.1 PFAM: metal-dependent hydrolase HDOD; KEGG: smt:Smal_3319 signal transduction protein YP_004145546.1 KEGG: xac:XAC3442 inorganic pyrophosphatase; PFAM: inorganic pyrophosphatase YP_004145547.1 TIGRFAM: succinate CoA transferase; KEGG: bxe:Bxe_B0397 acetyl-CoA hydrolase; PFAM: acetyl-CoA hydrolase/transferase YP_004145548.1 KEGG: xal:XALc_2522 probable cysteine synthase protein; TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta YP_004145549.1 KEGG: xop:PXO_02124 siroheme synthase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_004145550.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: xac:XAC3339 transcriptional regulator CysB-like protein YP_004145551.1 KEGG: pzu:PHZ_c0118 hypothetical protein YP_004145553.1 KEGG: sml:Smlt0390 hypothetical protein YP_004145554.1 KEGG: xcv:XCV3449 phosphoadenosine phosphosulfate reductase; TIGRFAM: phosphoadenosine phosphosulfate reductase; PFAM: phosphoadenosine phosphosulfate reductase YP_004145555.1 KEGG: xca:xccb100_1003 sulfite reductase subunit beta; TIGRFAM: sulfite reductase (NADPH) hemoprotein, beta-component; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein YP_004145556.1 KEGG: xac:XAC3330 NADPH-sulfite reductase flavoprotein subunit; TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: flavodoxin/nitric oxide synthase; FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein YP_004145557.1 TIGRFAM: sulfate adenylyltransferase, small subunit; KEGG: xca:xccb100_1005 sulfate adenylyltransferase subunit 2; PFAM: phosphoadenosine phosphosulfate reductase YP_004145558.1 TIGRFAM: sulfate adenylyltransferase, large subunit; adenylylsulfate kinase; KEGG: xca:xccb100_1006 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; PFAM: adenylylsulfate kinase; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein YP_004145559.1 KEGG: smt:Smal_3204 efflux transporter RND family, MFP subunit; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: hemolysin D family protein YP_004145560.1 PFAM: acriflavin resistance protein; KEGG: xca:xccb100_1008 RND superfamily phytotoxin exporter YP_004145561.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xcv:XCV3435 acetyltransferase YP_004145562.1 PFAM: protein of unknown function DUF418; KEGG: hba:Hbal_0971 protein of unknown function DUF418 YP_004145563.1 KEGG: xcb:XC_0999 sodium:alanine symporter family; region: Na_Ala_symp; cl00548; TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter YP_004145564.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: xal:XALc_2292 tRNA/rRNA methyltransferase protein YP_004145565.1 PFAM: glycoside hydrolase 97; KEGG: xcc:XCC3163 alpha-glucosidase YP_004145566.1 PFAM: peptidase M28; KEGG: xac:XAC3309 aminopeptidase YP_004145567.1 KEGG: sml:Smlt3782 large-conductance mechanosensitive channel; TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel YP_004145568.1 PFAM: fumarylacetoacetate hydrolase; KEGG: xca:xccb100_1023 fumarylacetoacetate hydrolase family protein YP_004145569.1 KEGG: xop:PXO_01837 hypothetical protein YP_004145570.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: smt:Smal_3193 Rieske (2Fe-2S) domain protein YP_004145571.1 PFAM: TrkA-C domain protein; citrate transporter; KEGG: smt:Smal_3192 TrkA-C domain protein YP_004145572.1 KEGG: sml:Smlt3776 tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase YP_004145573.1 PFAM: thiazole biosynthesis protein; KEGG: sml:Smlt3775 thiazole biosynthesis protein YP_004145574.1 KEGG: xcv:XCV3416 sulfur carrier protein ThiS; TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein YP_004145575.1 KEGG: xal:XALc_2260 triacylglycerol lipase/esterase protein; PFAM: Autotransporter beta- domain protein; lipolytic protein G-D-S-L family YP_004145576.1 KEGG: xca:xccb100_1079 ribosomal protein S6 modification protein; TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp YP_004145577.1 KEGG: xca:xccb100_1080 hypothetical protein YP_004145578.1 KEGG: smt:Smal_3181 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_004145579.1 KEGG: xcv:XCV3364 two-component system sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_004145580.1 KEGG: smt:Smal_0613 hypothetical protein YP_004145581.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: xal:XALc_2802 5,10-methylenetetrahydrofolate reductase protein; PFAM: methylenetetrahydrofolate reductase YP_004145582.1 KEGG: smt:Smal_0622 hypothetical protein YP_004145583.1 KEGG: xom:XOO_2282 hypothetical protein YP_004145584.1 TIGRFAM: adenosylhomocysteinase; KEGG: xal:XALc_2790 adenosylhomocysteinase protein; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding YP_004145585.1 KEGG: xcv:XCV0857 hypothetical protein YP_004145586.1 KEGG: xcv:XCV0858 phosphoenolpyruvate carboxylase; PFAM: phosphoenolpyruvate carboxylase, C-terminal region YP_004145587.1 PFAM: glycosyl transferase group 1; KEGG: avn:Avin_17290 UDP-glycosyltransferase/glycogen phosphorylase YP_004145588.1 PFAM: amylo-alpha-16-glucosidase; KEGG: vap:Vapar_0703 amylo-alpha-16-glucosidase YP_004145589.1 PFAM: phosphatidate cytidylyltransferase; KEGG: meh:M301_2351 phosphatidate cytidylyltransferase YP_004145590.1 KEGG: pfs:PFLU6109 phospholipd biosynthesis-related protein; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_004145591.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: smd:Smed_0112 CDP-alcohol phosphatidyltransferase YP_004145592.1 TIGRFAM: S-adenosylmethionine synthetase; KEGG: xop:PXO_04686 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase YP_004145593.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: xca:xccb100_3591 hypothetical protein YP_004145594.1 KEGG: amd:AMED_3096 TetR family transcriptional regulator YP_004145595.1 KEGG: smt:Smal_0637 TIM-barrel protein, nifR3 family; TIGRFAM: hypothetical protein; PFAM: dihydrouridine synthase DuS YP_004145596.1 PFAM: PfkB domain protein; KEGG: smt:Smal_0641 ribokinase YP_004145597.1 PFAM: Na+ dependent nucleoside transporter domain protein; Na+ dependent nucleoside transporter; nucleoside recognition domain protein; KEGG: xca:xccb100_3588 broadly selective sodium/nucleoside cotransporter YP_004145598.1 PFAM: aldo/keto reductase; KEGG: xcv:XCV0873 voltage-gated potassium channel subunit beta YP_004145599.1 PFAM: hemic uptake protein hemP; KEGG: xop:PXO_04672 hypothetical protein YP_004145600.1 KEGG: azl:AZL_b01120 hypothetical protein; PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_004145601.1 KEGG: spu:758554 hypothetical protein LOC758554 YP_004145602.1 KEGG: aca:ACP_0949 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2 YP_004145603.1 KEGG: xca:xccb100_1274 stomatin-like membrane protein; PFAM: band 7 protein; SMART: band 7 protein YP_004145604.1 PFAM: protein of unknown function DUF107; KEGG: xcb:XC_1231 NfeD-like; region: NfeD; cl00686 YP_004145605.1 KEGG: xcv:XCV4258 cation diffusion facilitator YP_004145606.1 KEGG: xal:XALc_2205 glycine cleavage system T protein, aminomethyltransferase; TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel YP_004145607.1 KEGG: xal:XALc_2204 glycine cleavage system H protein; TIGRFAM: glycine cleavage system protein H; PFAM: glycine cleavage H-protein YP_004145608.1 KEGG: smt:Smal_3071 histone H1 YP_004145609.1 PFAM: beta-lactamase; KEGG: xcv:XCV3193 beta-lactamase precursor YP_004145610.1 PFAM: LemA family protein; KEGG: ank:AnaeK_3383 LemA family protein YP_004145611.1 PFAM: peptidase M48 Ste24p; KEGG: tgr:Tgr7_1608 peptidase M48 Ste24p YP_004145612.1 KEGG: xal:XALc_2199 choline dehydrogenase protein; PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase YP_004145613.1 KEGG: xac:XAC3056 hypothetical protein YP_004145614.1 KEGG: smt:Smal_3065 hypothetical protein YP_004145615.1 PFAM: protein of unknown function DUF1974; acyl-CoA dehydrogenase domain-containing protein; KEGG: xca:xccb100_1284 acyl-CoA dehydrogenase YP_004145616.1 PFAM: alpha/beta hydrolase fold; KEGG: smt:Smal_3063 alpha/beta hydrolase fold YP_004145617.1 PFAM: regulatory protein TetR; KEGG: xca:xccb100_1286 TetR family transcriptional regulator YP_004145618.1 KEGG: xac:XAC3403 proline dipeptidase; PFAM: peptidase M24 YP_004145619.1 PFAM: type IV pilus assembly PilZ; KEGG: xca:xccb100_0928 hypothetical protein YP_004145620.1 PFAM: protein of unknown function DUF1631; KEGG: xac:XAC3401 hypothetical protein YP_004145621.1 TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; radical SAM protein; KEGG: xca:xccb100_0930 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_004145622.1 KEGG: xal:XALc_0794 hypothetical protein; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein YP_004145623.1 TIGRFAM: ribonuclease PH; KEGG: xal:XALc_0795 hypothetical ribonuclease ph protein; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2 YP_004145624.1 PFAM: YicC-like domain-containing protein; domain of unknown function DUF1732; KEGG: xca:xccb100_0934 hypothetical protein YP_004145625.1 SMART: guanylate kinase/L-type calcium channel region; TIGRFAM: guanylate kinase; KEGG: xal:XALc_0797 probable guanylate kinase (gmp kinase) protein; PFAM: guanylate kinase YP_004145626.1 KEGG: smt:Smal_3259 DNA-directed RNA polymerase subunit omega; TIGRFAM: DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase Rpb6 YP_004145627.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: sml:Smlt3683 O-antigen related protein YP_004145628.1 PFAM: glycosyl transferase family 2; KEGG: smt:Smal_3096 glycosyl transferase family 2 YP_004145629.1 PFAM: glycosyl transferase family 2; KEGG: noc:Noc_2177 rhamnosyltransferase YP_004145630.1 TIGRFAM: penicillin-binding protein 1B; KEGG: sml:Smlt3681 penicillin-binding protein 1B; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_004145631.1 KEGG: xal:XALc_2248 hypothetical protein YP_004145632.1 SMART: helicase c2; DEAD-like helicase; KEGG: xac:XAC3107 ATP-dependent helicase YP_004145633.1 PFAM: peptidase M22 glycoprotease; KEGG: sml:Smlt3677 glycoprotease protein YP_004145634.1 PFAM: diacylglycerol kinase; KEGG: smt:Smal_0655 diacylglycerol kinase YP_004145635.1 PFAM: integral membrane protein TerC; KEGG: sml:Smlt0805 transmembrane protein YP_004145636.1 KEGG: xal:XALc_2769 probable prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase YP_004145637.1 TIGRFAM: thymidylate synthase; KEGG: xal:XALc_2768 probable thymidylate synthase protein; PFAM: thymidylate synthase YP_004145638.1 KEGG: xal:XALc_2767 probable dihydrofolate reductase protein; PFAM: dihydrofolate reductase region YP_004145639.1 TIGRFAM: bis(5'-nucleosyl)-tetraphosphatase (symmetrical); KEGG: xal:XALc_2766 probable diadenosine tetraphosphatase protein; PFAM: metallophosphoesterase YP_004145640.1 PFAM: ApaG domain protein; KEGG: xal:XALc_2765 probable protein ApaG YP_004145641.1 SMART: ribosomal RNA adenine methylase transferase-like; TIGRFAM: dimethyladenosine transferase; KEGG: xop:PXO_04645 dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase YP_004145642.1 KEGG: xal:XALc_0668 probable two-component system response regulator protein pilr; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA YP_004145643.1 KEGG: xal:XALc_0669 probable two-component system sensor protein pils; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_004145644.1 TIGRFAM: succinyl-CoA synthetase subunit beta; KEGG: smt:Smal_3164 succinyl-CoA synthetase subunit beta; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase YP_004145645.1 KEGG: xca:xccb100_1097 succinyl-CoA synthetase subunit alpha; TIGRFAM: succinyl-CoA synthetase, subunit alpha; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding protein YP_004145646.1 KEGG: xca:xccb100_1100 NAD synthetase; TIGRFAM: NAD+ synthetase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004145647.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: xca:xccb100_1102 outer membrane lipoprotein YP_004145648.1 KEGG: xal:XALc_0695 probable pseudouridine synthase protein; TIGRFAM: pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein YP_004145649.1 PFAM: protein of unknown function DUF152; KEGG: xac:XAC3216 hypothetical protein YP_004145650.1 PFAM: protein of unknown function DUF481; KEGG: smt:Smal_3529 protein of unknown function DUF481 YP_004145651.1 TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; KEGG: sml:Smlt3743 alpha,alpha-trehalose-phosphate synthase; PFAM: glycosyl transferase family 20 YP_004145652.1 PFAM: glycoside hydrolase 15-related; KEGG: xal:XALc_0698 glycosyl hydrolase protein YP_004145653.1 KEGG: xoo:XOO1603 trehalose-6-phosphate phosphatase; TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase YP_004145654.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sml:Smlt3740 TonB dependent receptor YP_004145655.1 KEGG: xcv:XCV3332 hypothetical protein YP_004145656.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sml:Smlt0083 TonB dependent receptor protein YP_004145657.1 PFAM: sulfate transporter; KEGG: xcv:XCV3330 permease YP_004145658.1 KEGG: xca:xccb100_1119 hypothetical protein YP_004145659.1 KEGG: smt:Smal_3157 hypothetical protein YP_004145660.1 PFAM: excinuclease ABC subunit C; KEGG: xal:XALc_0322 endonuclease protein YP_004145661.1 TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; ATPase AAA; Clp domain protein; Clp ATPase-like; KEGG: xal:XALc_0712 atp-dependent clp protease subunit protein; SMART: ATPase AAA YP_004145662.1 TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: xca:xccb100_1126 O-acetylhomoserine aminocarboxypropyltransferase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_004145663.1 KEGG: smt:Smal_3140 potassium efflux system protein; TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein YP_004145664.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sml:Smlt3725 TonB dependent receptor YP_004145665.1 KEGG: smt:Smal_3138 ABC transporter; PFAM: ABC transporter related; SMART: ATPase AAA YP_004145666.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: smt:Smal_3137 LysR family transcriptional regulator YP_004145667.1 KEGG: sml:Smlt3722 beta-lactamase; PFAM: beta-lactamase YP_004145668.1 KEGG: xal:XALc_2436 hypothetical protein; TIGRFAM: regulatory protein, FmdB family; PFAM: regulatory protein FmdB YP_004145669.1 KEGG: smt:Smal_3134 hypothetical protein YP_004145670.1 KEGG: lhk:LHK_02194 probable oxidoreductase YP_004145671.1 KEGG: xac:XAC3155 hypothetical protein YP_004145672.1 KEGG: xcb:XC_0416 sulfatase; region: sulfatase; cl10460; PFAM: sulfatase YP_004145673.1 KEGG: smt:Smal_3132 aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein YP_004145674.1 KEGG: smt:Smal_3131 hypothetical protein YP_004145675.1 PFAM: GCN5-related N-acetyltransferase; KEGG: smt:Smal_3130 GCN5-related N-acetyltransferase YP_004145676.1 KEGG: smt:Smal_1421 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_004145677.1 KEGG: smt:Smal_3129 PGAP1 family protein YP_004145678.1 PFAM: protein of unknown function DUF28; KEGG: xal:XALc_2432 hypothetical protein YP_004145679.1 TIGRFAM: crossover junction endodeoxyribonuclease RuvC; KEGG: xal:XALc_2431 Holliday junction resolvasome, endonuclease subunit protein; PFAM: Crossover junction endodeoxyribonuclease RuvC YP_004145680.1 KEGG: sml:Smlt3711 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein YP_004145681.1 PFAM: K potassium transporter; KEGG: smt:Smal_3125 K potassium transporter YP_004145682.1 TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; KEGG: xal:XALc_2428 Holliday junction resolvasome, helicase subunit protein; SMART: ATPase AAA YP_004145683.1 TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; KEGG: smt:Smal_0669 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: pyridoxal phosphate biosynthetic protein PdxA YP_004145684.1 PFAM: SurA domain; PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: sml:Smlt0820 survival protein SurA precursor YP_004145685.1 PFAM: organic solvent tolerance protein; OstA family protein; KEGG: xal:XALc_2761 probable organic solvent tolerance protein YP_004145686.1 PFAM: histone deacetylase superfamily; KEGG: smt:Smal_0672 histone deacetylase superfamily YP_004145687.1 TIGRFAM: ATP/cobalamin adenosyltransferase; KEGG: xcb:XC_3435 cobalamin adenosyltransferase; region: Cob_adeno_trans; cl00920; PFAM: cobalamin adenosyltransferase YP_004145688.1 KEGG: xom:XOO_3532 hypothetical protein YP_004145689.1 KEGG: xcc:XCC0798 2-octaprenyl-6-methoxyphenyl hydroxylase; TIGRFAM: 2-polyprenyl-6-methoxyphenol 4-hydroxylase; Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: Lycopene beta and epsilon cyclase YP_004145690.1 KEGG: xac:XAC0873 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: FAD dependent oxidoreductase YP_004145691.1 KEGG: sml:Smlt0827 hypothetical protein YP_004145692.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: xac:XAC0888 glucose-fructose oxidoreductase YP_004145693.1 KEGG: xac:XAC0886 hypothetical protein YP_004145694.1 KEGG: xcb:XC_1284 Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. classical (gram-negative ) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,...; region: OM_channels; cl00284; TIGRFAM: TonB-dependent receptor; outer membrane insertion C-terminal signal; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004145695.1 PFAM: SapC family protein; KEGG: xal:XALc_3148 hypothetical SapC-related protein YP_004145696.1 SMART: transcription factor jumonji jmjC domain-containing protein; KEGG: xca:xccb100_1332 hypothetical protein YP_004145697.1 KEGG: xcv:XCV3144 tryptophan halogenase YP_004145698.1 KEGG: cak:Caul_2066 hypothetical protein YP_004145699.1 KEGG: xcb:XC_1284 Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. classical (gram-negative ) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,...; region: OM_channels; cl00284; TIGRFAM: TonB-dependent receptor; outer membrane insertion C-terminal signal; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004145700.1 PFAM: xanthine/uracil/vitamin C permease; KEGG: smt:Smal_0570 xanthine/uracil/vitamin C permease YP_004145701.1 KEGG: fba:FIC_01627 hypothetical protein YP_004145702.1 KEGG: sml:Smlt0716 ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA YP_004145703.1 KEGG: xcv:XCV0793 hypothetical protein YP_004145704.1 KEGG: smt:Smal_0573 serine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase YP_004145705.1 KEGG: dds:Ddes_1461 TonB family protein YP_004145706.1 PFAM: ATP-cone domain protein; KEGG: xal:XALc_2842 hypothetical protein containing atp cone domain YP_004145707.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xca:xccb100_3665 acetyltransferase YP_004145708.1 TIGRFAM: riboflavin biosynthesis protein RibD; KEGG: xal:XALc_2840 probable riboflavin biosynthesis RibD oxidoreductase protein; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding YP_004145709.1 TIGRFAM: riboflavin synthase, subunit alpha; KEGG: xac:XAC0748 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein YP_004145710.1 KEGG: xca:xccb100_3659 riboflavi biosynthesis protein RibB (GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase); TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II YP_004145711.1 KEGG: xal:XALc_2837 6,7-dimethyl-8-ribityllumazine synthase, riboflavin synthase subunit beta protein; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase YP_004145712.1 KEGG: xal:XALc_2836 transcription termination factor NusB protein; TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44 YP_004145713.1 TIGRFAM: thiamine-monophosphate kinase; KEGG: xal:XALc_2835 thiamine monophosphate kinase protein; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_004145714.1 PFAM: aminotransferase class I and II; KEGG: bcv:Bcav_0562 aminotransferase class I and II YP_004145715.1 PFAM: FAD linked oxidase; KEGG: xal:XALc_2827 fad/fmn-containing dehydrogenase protein YP_004145716.1 PFAM: Uncharacterised protein family UPF0102; KEGG: xca:xccb100_3645 hypothetical protein YP_004145717.1 KEGG: xcv:XCV0817 lipoprotein YP_004145718.1 PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: xal:XALc_2824 methyltransferase protein YP_004145719.1 KEGG: sml:Smlt0747 cell division protein MraZ; TIGRFAM: MraZ protein; PFAM: MraZ domain YP_004145720.1 KEGG: xal:XALc_2821 S-adenosyl-methyltransferase protein; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase YP_004145721.1 KEGG: xal:XALc_2820 probable cell division protein FtsL; TIGRFAM: cell division protein FtsL; PFAM: cell division protein FtsL YP_004145722.1 KEGG: xcv:XCV0825 cell division protein FtsI; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_004145723.1 KEGG: xal:XALc_2818 probable udp-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase protein; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_004145724.1 KEGG: smt:Smal_0599 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D -alanyl ligase; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_004145725.1 KEGG: xac:XAC0777 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: glycosyl transferase, family 4, conserved region; phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YP_004145726.1 KEGG: xca:xccb100_3632 septum-peptidoglycan biosynthetic protein; TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein YP_004145727.1 KEGG: xcb:XC_3510 homodimer interface; other site; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyltransferase 28 domain; glycosyl transferase family 28 YP_004145728.1 KEGG: xca:xccb100_3630 UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein YP_004145729.1 TIGRFAM: D-alanine/D-alanine ligase; KEGG: xcv:XCV0832 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein YP_004145730.1 PFAM: cell division protein FtsQ; polypeptide-transport-associated domain protein FtsQ-type; KEGG: smt:Smal_0605 polypeptide-transport-associated domain protein FtsQ-type YP_004145731.1 KEGG: xal:XALc_2810 probable cell division protein FtsA; TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA YP_004145732.1 KEGG: xom:XOO_3599 cell division protein FtsZ; TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain YP_004145733.1 KEGG: xal:XALc_2808 probable udp-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase protein; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase YP_004145735.1 PFAM: peptidase M23; KEGG: xcb:XC_3502 peptidase family M23; region: peptidase_M23; pfam01551 YP_004145736.1 KEGG: xcv:XCV0839 preprotein translocase subunit SecA; TIGRFAM: preprotein translocase subunit SecA; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; SecA Wing and Scaffold; SEC-C motif domain protein YP_004145737.1 KEGG: xca:xccb100_3619 hypothetical protein; TIGRFAM: mutator MutT protein; PFAM: thiamine monophosphate synthase; NUDIX hydrolase YP_004145738.1 TIGRFAM: dephospho-CoA kinase; KEGG: smt:Smal_3179 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_004145739.1 KEGG: xcv:XCV3355 type II secretory pathway prepilin signal peptidase; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV YP_004145740.1 PFAM: type II secretion system F domain; KEGG: xal:XALc_0665 probable fimbrial assembly protein YP_004145741.1 PFAM: fimbrial protein pilin; KEGG: xcb:XC_1058 pilin (bacterial filament); region: pilin; pfam00114 YP_004145742.1 KEGG: tmz:Tmz1t_3897 hypothetical protein YP_004145743.1 KEGG: tmz:Tmz1t_3900 ABC transporter; PFAM: ABC transporter related; SMART: ATPase AAA YP_004145744.1 PFAM: methyltransferase type 12; KEGG: spc:Sputcn32_2617 methyltransferase type 12 YP_004145745.1 KEGG: spc:Sputcn32_2616 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase YP_004145746.1 KEGG: shw:Sputw3181_1395 sugar nucleotidyltransferase YP_004145747.1 PFAM: LicD family protein; KEGG: pdi:BDI_1471 lipopolysaccharide biosynthsis protein YP_004145748.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: dsa:Desal_0581 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_004145749.1 KEGG: nca:Noca_1691 glycerol-3-phosphate cytidylyltransferase; TIGRFAM: cytidyltransferase-related domain protein; PFAM: cytidylyltransferase YP_004145750.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: mth:MTH365 teichoic acid biosynthesis protein RodC related protein YP_004145751.1 PFAM: glycosyl transferase group 1; KEGG: tgr:Tgr7_0793 glycosyltransferase-like protein YP_004145752.1 PFAM: glycosyl transferase family 2; KEGG: smt:Smal_3168 glycosyl transferase family 2 YP_004145753.1 KEGG: meh:M301_0623 FimB YP_004145754.1 KEGG: xac:XAC3239 pilus biogenesis protein; TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; general secretory system protein E YP_004145755.1 KEGG: xcv:XCV1177 hypothetical protein YP_004145756.1 KEGG: xom:XOO_1548 hypothetical protein; TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein YP_004145757.1 KEGG: xac:XAC3145 TolQ protein; TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel YP_004145758.1 KEGG: xal:XALc_2425 probable biopolymer transport TolR protein; TIGRFAM: protein TolR; PFAM: biopolymertransporter ExbD/TolR YP_004145759.1 TIGRFAM: protein TolA; KEGG: xal:XALc_2424 probable biopolymer transporter YP_004145760.1 KEGG: xal:XALc_2423 probable biopolymer transport protein, periplasmic component; TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: TolB domain-containing protein; WD40-like beta Propeller containing protein YP_004145761.1 KEGG: sml:Smlt3703 peptidoglycan-associated lipoprotein; TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein YP_004145762.1 TIGRFAM: tol-pal system protein YbgF; KEGG: sml:Smlt3702 TPR repeat exported protein YP_004145763.1 PFAM: radical SAM protein; KEGG: xal:XALc_2420 organic radical activating enzyme protein YP_004145764.1 KEGG: xal:XALc_2419 transcriptional regulator, ExsB family protein; TIGRFAM: exsB protein; PFAM: Queuosine synthesis-like YP_004145765.1 KEGG: dwi:Dwil_GK16139 GK16139 gene product from transcript GK16139-RA YP_004145766.1 KEGG: scl:sce5015 hypothetical protein YP_004145768.1 KEGG: kfl:Kfla_7044 aminoglycoside phosphotransferase YP_004145769.1 KEGG: xcv:XCV2627 ATP-dependent DNA helicase Lhr; PFAM: DEAD/DEAH box helicase; DEAD/DEAH box helicase; helicase; SMART: DEAD-like helicase ; helicase YP_004145770.1 TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: RQC domain; DEAD/DEAH box helicase domain protein; helicase; HRDC domain protein; KEGG: sml:Smlt3689 ATP-dependent DNA helicase; SMART: DEAD-like helicase ; helicase domain protein; HRDC domain protein YP_004145771.1 TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-associated domain protein; helicase; protein of unknown function DUF1605; KEGG: xcb:XC_1164 domain of unknown function (DUF3418); region: DUF3418; pfam11898; SMART: DEAD-like helicase ; ATPase AAA; helicase YP_004145772.1 PFAM: ferritin; KEGG: xoo:XOO1724 DNA-binding related protein YP_004145773.1 KEGG: xcv:XCV3249 hypothetical protein YP_004145774.1 TIGRFAM: RelA/SpoT family protein; KEGG: xal:XALc_2252 guanosine polyphosphate pyrophosphohydrolase/synthetase protein; PFAM: RelA/SpoT domain protein; TGS domain-containing protein YP_004145775.1 SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: RelA/SpoT family protein; KEGG: xal:XALc_0799 probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase protein; PFAM: RelA/SpoT domain protein; metal-dependent phosphohydrolase HD sub domain; TGS domain-containing protein; amino acid-binding ACT domain protein YP_004145776.1 KEGG: xca:xccb100_0946 ribonuclease; TIGRFAM: endoribonuclease L-PSP; PFAM: endoribonuclease L-PSP YP_004145777.1 TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase; nucleic acid binding OB-fold tRNA/helicase-type; helicase; KEGG: xac:XAC3391 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase ; helicase YP_004145778.1 PFAM: inosine/uridine-preferring nucleoside hydrolase; KEGG: xcv:XCV3507 inosine-uridine preferring nucleoside hydrolase YP_004145779.1 KEGG: sml:Smlt3836 50S ribosomal protein L31 type B; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31 YP_004145780.1 TIGRFAM: citrate synthase I; KEGG: xca:xccb100_0951 type II citrate synthase; PFAM: citrate synthase YP_004145781.1 KEGG: smt:Smal_3242 hypothetical protein YP_004145782.1 TIGRFAM: penicillin-binding protein, 1A family; KEGG: xcv:XCV3502 penicillin-binding protein 1A; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_004145783.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: sml:Smlt3825 PilM protein (type 4 fimbrial biogenesis protein) YP_004145784.1 PFAM: fimbrial assembly family protein; KEGG: smt:Smal_3239 fimbrial assembly family protein YP_004145785.1 KEGG: xcb:XC_0939 pilus assembly protein, PilO; region: PilO; cl01234 YP_004145786.1 PFAM: pilus assembly protein PilP; KEGG: xal:XALc_2350 probable type IV pilus assembly protein PilP YP_004145787.1 KEGG: xal:XALc_2349 probable type IV pilus assembly protein pilq; TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; Secretin/TonB short domain; NolW domain protein YP_004145788.1 KEGG: smt:Smal_3235 ATPase associated with various cellular activities AAA_3; PFAM: ATPase associated with various cellular activities AAA_3; SMART: ATPase AAA YP_004145789.1 PFAM: protein of unknown function DUF58; KEGG: xal:XALc_2347 hypothetical protein YP_004145790.1 KEGG: xal:XALc_2346 hypothetical protein YP_004145791.1 KEGG: xal:XALc_2345 von willebrand factor, type a protein; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A YP_004145792.1 KEGG: xal:XALc_2344 tpr domain protein; von willebrand factor, type A; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat YP_004145793.1 KEGG: xcv:XCV3492 hypothetical protein YP_004145794.1 PFAM: sodium:dicarboxylate symporter; KEGG: xac:XAC3373 proton glutamate symport protein YP_004145795.1 KEGG: xal:XALc_2337 transketolase protein; TIGRFAM: transketolase; PFAM: transketolase domain-containing protein; transketolase YP_004145796.1 PFAM: NUDIX hydrolase; KEGG: ttj:TTHA0528 ADP-ribose pyrophosphatase YP_004145797.1 KEGG: mmi:MMAR_3960 hypothetical protein YP_004145798.1 PFAM: BolA family protein; KEGG: avn:Avin_34860 BolA-like protein YP_004145799.1 KEGG: tbi:Tbis_2773 topoisomerase YP_004145800.1 PFAM: Penicillinase repressor; KEGG: xac:XAC3363 BlaI family transcriptional regulator YP_004145801.1 KEGG: xcb:XC_0915 gram-negative bacterial TonB protein; region: TonB; cl10048; TIGRFAM: TonB family protein; PFAM: peptidase M56 BlaR1; TonB domain YP_004145802.1 KEGG: xop:PXO_02321 lipoprotein YP_004145803.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: smt:Smal_3226 flavin reductase domain protein FMN-binding YP_004145804.1 KEGG: xcv:XCV3477 molybdate ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA YP_004145805.1 KEGG: xac:XAC3359 molybdate ABC transporter permease protein; TIGRFAM: molybdate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component YP_004145806.1 KEGG: xcb:XC_0910 the substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; region: PBP2_LTTR_substrate; cl11398; TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1 YP_004145807.1 PFAM: S1/P1 nuclease; KEGG: xcb:XC_0908 S1/P1 nuclease; region: S1-P1_nuclease; pfam02265 YP_004145808.1 PFAM: OmpW family protein; KEGG: sml:Smlt3805 outer membrane Omp family protein YP_004145809.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: aav:Aave_4588 glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_004145810.1 PFAM: protein of unknown function DUF2339, transmembrane; KEGG: smt:Smal_3218 hypothetical protein YP_004145811.1 KEGG: xop:PXO_02115 hypothetical protein YP_004145812.1 KEGG: xal:XALc_2305 phosphoglycerate kinase protein; PFAM: phosphoglycerate kinase YP_004145813.1 KEGG: sml:Smlt3663 nucleoside triphosphate pyrophosphohydrolase; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase YP_004145814.1 PFAM: protein of unknown function UPF0060; KEGG: sml:Smlt3662 transmembrane protein YP_004145815.1 PFAM: protein of unknown function DUF486; KEGG: xca:xccb100_3581 hypothetical protein YP_004145816.1 KEGG: cak:Caul_4403 transcriptional activator FtrA; PFAM: ThiJ/PfpI domain-containing protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_004145817.1 KEGG: bac:BamMC406_4865 rhodanese domain-containing protein; PFAM: rhodanese; SMART: rhodanese YP_004145818.1 KEGG: rso:RS03106 acetyltransferase protein; manually curated; PFAM: GCN5-related N-acetyltransferase YP_004145819.1 PFAM: protein of unknown function DUF214; KEGG: xcb:XC_3455 predicted ABC-type transporter involved in lysophospholipase L1 biosynthesis, permease [Secondary metabolites biosynthesis, transport, and catabolism]; region: COG3127; COG3127 YP_004145820.1 KEGG: xal:XALc_2775 probable abc transporter atp-binding protein; PFAM: ABC transporter; SMART: ATPase AAA YP_004145821.1 KEGG: xac:XAC0833 acyl-CoA thioesterase I; PFAM: lipolytic protein G-D-S-L family YP_004145822.1 KEGG: xca:xccb100_3573 two-component system regulatory protein; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_004145823.1 KEGG: smt:Smal_0653 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_004145824.1 KEGG: pat:Patl_2777 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: hemolysin D family protein YP_004145825.1 KEGG: cyb:CYB_0738 ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA YP_004145826.1 PFAM: protein of unknown function DUF214; KEGG: geo:Geob_2110 protein of unknown function DUF214 YP_004145827.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: kko:Kkor_2287 TonB-dependent receptor YP_004145828.1 PFAM: methyltransferase type 11; KEGG: slo:Shew_2479 methyltransferase type 11 YP_004145829.1 KEGG: gvi:gll1384 hypothetical protein; PFAM: sulfotransferase; SMART: Tetratricopeptide repeat YP_004145830.1 KEGG: xac:XAC3049 hypothetical protein YP_004145831.1 PFAM: Hsp33 protein; KEGG: sml:Smlt3643 heat shock chaperonin YP_004145832.1 KEGG: sml:Smlt3642 monofunctional biosynthetic peptidoglycan transglycosylase; TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51 YP_004145833.1 PFAM: glycosyl transferase family 2; KEGG: xal:XALc_2191 glycosyltransferase protein YP_004145834.1 KEGG: xal:XALc_2190 signal-transduction protein with cbs domains; PFAM: CBS domain containing protein; SMART: CBS domain containing protein YP_004145835.1 PFAM: AsmA family protein; KEGG: sml:Smlt3639 outer membrane protein assembly protein, AsmA family YP_004145836.1 KEGG: smt:Smal_3054 channel protein, hemolysin III family; TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein YP_004145837.1 KEGG: xal:XALc_2188 peptide chain release factor rf-3 protein; TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein YP_004145838.1 KEGG: sco:SCO7128 transmembrane efflux protein YP_004145839.1 KEGG: saz:Sama_3573 ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA YP_004145840.1 KEGG: cja:CJA_0601 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_004145841.1 PFAM: peptidase M23; KEGG: smt:Smal_3052 peptidase M23 YP_004145842.1 KEGG: xal:XALc_2186 homoserine O-acetyltransferase protein; PFAM: alpha/beta hydrolase fold YP_004145843.1 KEGG: xcb:XC_1252 catalytic residue; other site; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_004145844.1 KEGG: smt:Smal_3049 homoserine dehydrogenase; PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding YP_004145845.1 TIGRFAM: L-serine dehydratase; KEGG: xca:xccb100_1302 hypothetical protein; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain YP_004145846.1 PFAM: glutaredoxin 2; KEGG: xal:XALc_2178 thiol-disulfide isomerase and thioredoxin; glutaredoxin protein YP_004145847.1 PFAM: YceI family protein; KEGG: smt:Smal_3045 YceI family protein YP_004145848.1 KEGG: xca:xccb100_1305 cytochrome b561 YP_004145849.1 PFAM: YceI family protein; KEGG: xac:XAC3032 hypothetical protein YP_004145850.1 KEGG: xca:xccb100_1307 two-component system sensor histidine kinase-response regulator hybrid protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two component regulator three Y domain-containing protein; Two component regulator propeller; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver YP_004145851.1 KEGG: cre:CHLREDRAFT_148822 hypothetical protein YP_004145852.1 TIGRFAM: uroporphyrinogen decarboxylase; KEGG: xcv:XCV3163 uroporphyrinogen decarboxylase; PFAM: uroporphyrinogen decarboxylase (URO-D) YP_004145853.1 KEGG: xca:xccb100_1313 hypothetical protein YP_004145854.1 KEGG: xcb:XC_1268 metal binding site; other site; TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase YP_004145855.1 KEGG: xal:XALc_2165 shikimate kinase protein; PFAM: shikimate kinase YP_004145856.1 KEGG: pcs:Pc12g14420 hypothetical protein YP_004145857.1 KEGG: sbp:Sbal223_0289 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_004145858.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; histidine kinase A domain protein; hypothetical protein; ATP-binding region ATPase domain protein; KEGG: bxe:Bxe_A4067 PAS/PAC sensor hybrid histidine kinase; SMART: response regulator receiver; histidine kinase A domain protein; PAS domain containing protein; ATP-binding region ATPase domain protein YP_004145859.1 KEGG: smt:Smal_3034 hypothetical protein YP_004145860.1 TIGRFAM: pyridoxamine 5'-phosphate oxidase; KEGG: smt:Smal_3033 pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxine 5'-phosphate oxidase dimerisation-like YP_004145861.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sml:Smlt3615 aminoglycoside 6'-N-acetyltransferase YP_004145862.1 PFAM: periplasmic binding protein; KEGG: mpt:Mpe_A0904 substrate-binding protein YP_004145863.1 PFAM: methyltransferase type 12; KEGG: sml:Smlt1487 methyltransferase YP_004145864.1 PFAM: Uncharacterised protein family UPF0093; KEGG: xal:XALc_2042 hypothetical protein YP_004145865.1 KEGG: xac:XAC2759 alkaline phosphatase; PFAM: alkaline phosphatase; SMART: alkaline phosphatase YP_004145866.1 PFAM: sodium:dicarboxylate symporter; KEGG: mxa:MXAN_3877 sodium:dicarboxylate symporter family protein YP_004145867.1 PFAM: NLP/P60 protein; KEGG: xal:XALc_2448 hypothetical protein YP_004145868.1 PFAM: NLP/P60 protein; KEGG: xac:XAC2753 lipoprotein YP_004145869.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: sml:Smlt3459 peptidyl-prolyl cis-trans isomerase YP_004145870.1 KEGG: xal:XALc_2039 probable ribonuclease HII (RNase HII, degrades rna of dna-rna hybrids) protein; PFAM: ribonuclease HII/HIII YP_004145871.1 TIGRFAM: lipid-A-disaccharide synthase; KEGG: xal:XALc_2038 probable lipid a disaccharide synthetase protein; PFAM: glycosyl transferase family 19 YP_004145872.1 KEGG: smt:Smal_1254 UDP-N-acetylglucosamine acyltransferase; TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase YP_004145873.1 KEGG: sml:Smlt1496 (3R)-hydroxymyristoyl-ACP dehydratase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ YP_004145874.1 KEGG: xca:xccb100_2933 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; transferase hexapeptide repeat containing protein YP_004145875.1 KEGG: xop:PXO_00166 Smr domain protein; PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2 YP_004145876.1 KEGG: xca:xccb100_2553 stationary phase survival protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE YP_004145877.1 TIGRFAM: protein-L-isoaspartate O-methyltransferase; KEGG: xac:XAC1726 L-isoaspartate protein carboxylmethyltransferase type II; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_004145878.1 KEGG: smt:Smal_1460 hypothetical protein YP_004145879.1 KEGG: xop:PXO_00162 lipoprotein; PFAM: peptidase M23; peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding LysM YP_004145880.1 KEGG: sen:SACE_6847 PE-PGRS family protein YP_004145881.1 PFAM: protein of unknown function DUF498; KEGG: xal:XALc_1161 hypothetical protein YP_004145882.1 PFAM: protein of unknown function UPF0044; KEGG: xac:XAC1730 hypothetical protein YP_004145883.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: xac:XAC1731 cell division protein YP_004145884.1 SMART: ATPase AAA; TIGRFAM: ATP-dependent metalloprotease FtsH; KEGG: xac:XAC1732 cell division protein; PFAM: peptidase M41; ATPase AAA central domain protein YP_004145885.1 KEGG: cef:CE0619 hypothetical protein YP_004145886.1 TIGRFAM: dihydropteroate synthase; KEGG: sml:Smlt1734 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_004145887.1 TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: xcb:XC_2516 IPP transferase; region: IppT; cl00403; PFAM: tRNA isopentenyltransferase YP_004145888.1 KEGG: smt:Smal_1471 RNA-binding protein Hfq; TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core YP_004145889.1 KEGG: xal:XALc_1168 probable gtp-binding protein HflX; TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related YP_004145890.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: xcv:XCV1175 integral membrane protease subunit HflK; SMART: band 7 protein YP_004145891.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: xcc:XCC1051 integral membrane proteinase subunit; SMART: band 7 protein YP_004145892.1 PFAM: protein of unknown function DUF2065; KEGG: xcc:XCC1052 hypothetical protein YP_004145893.1 KEGG: xcv:XCV3058 phenazine biosynthesis PhzF family protein; TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein YP_004145894.1 KEGG: xcv:XCV3057 phenazine biosynthesis PhzF family protein; TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein YP_004145895.1 KEGG: xca:xccb100_1420 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; TIGRFAM: aspartate kinase; PFAM: Orn/DAP/Arg decarboxylase 2; aspartate/glutamate/uridylate kinase YP_004145896.1 KEGG: xal:XALc_1039 hypothetical protein YP_004145897.1 KEGG: sml:Smlt1170 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_004145898.1 PFAM: polyprenyl synthetase; KEGG: xcv:XCV3050 octaprenyl-diphosphate synthase YP_004145899.1 KEGG: xfn:XfasM23_0658 single-stranded DNA-binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n YP_004145900.1 KEGG: sml:Smlt1245 oligopeptide transporter; TIGRFAM: oligopeptide transporter OPT family; oligopeptide transporters, OPT superfamily; PFAM: oligopeptide transporter OPT superfamily protein YP_004145901.1 PFAM: WD40-like beta Propeller containing protein; KEGG: xcv:XCV1232 dipeptidyl peptidase YP_004145902.1 PFAM: protein of unknown function DUF819; KEGG: sml:Smlt3565 transmembrane protein YP_004145903.1 PFAM: protein of unknown function DUF466; KEGG: xal:XALc_2072 hypothetical protein YP_004145904.1 PFAM: carbon starvation protein CstA; KEGG: smt:Smal_2987 carbon starvation protein CstA YP_004145905.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: sml:Smlt1589 transmembrane magnesium/cobalt transporter YP_004145906.1 KEGG: sml:Smlt1590 transmembrane protein YP_004145907.1 KEGG: sml:Smlt1591 cation transporter efflux protein component; PFAM: CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein YP_004145908.1 KEGG: xal:XALc_2085 hypothetical protein YP_004145909.1 PFAM: protein of unknown function UPF0054; KEGG: smt:Smal_1352 metalloprotease YP_004145910.1 PFAM: PhoH family protein; KEGG: xca:xccb100_1843 PhoH-like ATP-binding protein YP_004145911.1 TIGRFAM: tRNA-i(6)A37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; radical SAM protein; deoxyribonuclease/rho motif-related TRAM; KEGG: xal:XALc_1262 2-methylthioadenine synthetase protein; SMART: Elongator protein 3/MiaB/NifB YP_004145912.1 PFAM: lytic transglycosylase catalytic; KEGG: xca:xccb100_1847 soluble lytic murein transglycosylase YP_004145913.1 TIGRFAM: ubiquinol-cytochrome C reductase, iron-sulfur subunit; KEGG: xca:xccb100_1848 ubiquinol-cytochrome C reductase, iron-sulfur subunit; PFAM: Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal; Rieske [2Fe-2S] iron-sulphur domain YP_004145914.1 PFAM: cytochrome b/b6 domain; KEGG: smt:Smal_1362 cytochrome b/b6 domain YP_004145915.1 PFAM: cytochrome C1; KEGG: xcb:XC_1794 cytochrome C1 family; region: Cytochrom_C1; pfam02167 YP_004145916.1 PFAM: glutathione S-transferase domain; KEGG: xal:XALc_1267 probable stringent starvation protein A YP_004145917.1 PFAM: stringent starvation protein B; KEGG: xca:xccb100_1852 ClpXP protease specificity-enhancing factor YP_004145918.1 KEGG: xac:XAC2451 hypothetical protein YP_004145919.1 PFAM: protein of unknown function DUF2272; KEGG: xac:XAC2682 hypothetical protein YP_004145920.1 TIGRFAM: nicotinate-nucleotide pyrophosphorylase; KEGG: xac:XAC2681 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_004145921.1 PFAM: protein of unknown function DUF343; KEGG: xcv:XCV2830 hypothetical protein YP_004145922.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; KEGG: sml:Smlt1613 phosphoribosylaminoimidazole carboxylase catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_004145923.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; KEGG: xac:XAC2678 phosphoribosylaminoimidazole carboxylase ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp YP_004145924.1 KEGG: xal:XALc_1274 probable superoxide dismutase protein; PFAM: Manganese/iron superoxide dismutase-like YP_004145925.1 KEGG: xca:xccb100_1661 hypothetical protein; TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin YP_004145926.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xal:XALc_1276 short-chain dehydrogenase/reductase protein YP_004145927.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: xop:PXO_01317 multiple antibiotic resistance protein MarC YP_004145928.1 KEGG: smt:Smal_1376 TonB-dependent outer membrane receptor YP_004145929.1 PFAM: Conserved hypothetical protein CHP00730; KEGG: sml:Smlt1620 lysine decarboxylase protein YP_004145930.1 PFAM: histidine kinase internal region; KEGG: xac:XAC2670 alginate biosynthesis protein YP_004145931.1 KEGG: xac:XAC2669 pre-pilin like leader sequence YP_004145932.1 TIGRFAM: type IV pilus modification protein PilV; KEGG: xca:xccb100_1668 pre-pilin leader sequence YP_004145933.1 KEGG: xca:xccb100_1669 hypothetical protein YP_004145934.1 KEGG: xca:xccb100_1670 hypothetical protein YP_004145935.1 KEGG: xca:xccb100_1671 Tfp pilus assembly protein YP_004145936.1 KEGG: xal:XALc_1286 probable type IV pilin pile protein YP_004145937.1 KEGG: xal:XALc_1871 probable type IV pilus assembly protein fimt YP_004145938.1 TIGRFAM: excinuclease ABC subunit B; PFAM: helicase domain protein; type III restriction protein res subunit; UvrB/UvrC protein; KEGG: smt:Smal_1385 excinuclease ABC subunit B; SMART: DEAD-like helicase ; helicase YP_004145939.1 KEGG: xac:XAC1925 transcriptional regulator; PFAM: hypothetical protein; SMART: hypothetical protein YP_004145940.1 PFAM: transcriptional activator domain; transcriptional regulator domain-containing protein; KEGG: sth:STH810 transcriptional regulator YP_004145941.1 KEGG: dra:DR_2090 hypothetical protein YP_004145942.1 KEGG: hch:HCH_03884 hypothetical protein; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; peptidase S1 and S6 chymotrypsin/Hap; SMART: N-acetylmuramoyl-L-alanine amidase family 2 YP_004145943.1 KEGG: hch:HCH_03891 hypothetical protein YP_004145944.1 KEGG: jan:Jann_2536 N-acetylmuramoyl-L-alanine amidase YP_004145945.1 KEGG: hch:HCH_03886 hypothetical protein YP_004145946.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: hch:HCH_03894 subtilisin-like serine protease YP_004145947.1 KEGG: reh:H16_A1945 hypothetical protein YP_004145948.1 KEGG: nda:Ndas_0577 alanine racemase domain protein YP_004145949.1 KEGG: hch:HCH_03891 hypothetical protein YP_004145950.1 KEGG: hch:HCH_03891 hypothetical protein YP_004145951.1 KEGG: hch:HCH_03892 hypothetical protein YP_004145952.1 KEGG: mmu:100041170 predicted gene 3178 YP_004145953.1 KEGG: afw:Anae109_3517 hypothetical protein YP_004145954.1 PFAM: protein of unknown function DUF1680; KEGG: ote:Oter_3214 hypothetical protein YP_004145955.1 KEGG: xal:XALc_0937 probable dihydroxy-acid dehydratase (dad) protein; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_004145956.1 PFAM: sulfate transporter; sulfate transporter/antisigma-factor antagonist STAS; KEGG: xcv:XCV3891 sulfate permease YP_004145957.1 KEGG: sml:Smlt0178 ArsR family transcriptional regulatory protein; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR YP_004145958.1 KEGG: sml:Smlt2422 arsenic resistance protein; TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase YP_004145959.1 KEGG: tmz:Tmz1t_1853 arsenic resistance protein; TIGRFAM: arsenic resistance protein; PFAM: Bile acid:sodium symporter YP_004145960.1 KEGG: pol:Bpro_2219 arsenate reductase; TIGRFAM: arsenate reductase; PFAM: arsenate reductase YP_004145961.1 PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: xca:xccb100_3148 exported alpha-N-arabinofuranosidase; SMART: alpha-L-arabinofuranosidase domain protein YP_004145962.1 KEGG: xal:XALc_0947 probable aldose 1-epimerase (mutarotase) protein; PFAM: aldose 1-epimerase YP_004145963.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: sme:SMc00588 D-galactose 1-dehydrogenase protein YP_004145964.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: xal:XALc_0939 trancriptional regulator, LysR family transcription regulator protein YP_004145965.1 PFAM: fumarylacetoacetate hydrolase; KEGG: xal:XALc_0940 hypothetical protein YP_004145966.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: xal:XALc_0941 abc transporter periplasmic-binding protein precursor YP_004145967.1 KEGG: xal:XALc_0942 abc transporter atp-binding protein; PFAM: ABC transporter; SMART: ATPase AAA YP_004145968.1 PFAM: inner-membrane translocator; KEGG: xal:XALc_0943 inner membrane abc transporter permease abc transporter permease protein YP_004145969.1 PFAM: inner-membrane translocator; KEGG: xal:XALc_0944 inner membrane abc transporter permease abc transporter permease protein YP_004145970.1 PFAM: glycoside hydrolase 97; KEGG: rmr:Rmar_0476 alpha-glucosidase, , adg97A YP_004145971.1 PFAM: glycoside hydrolase family 43; KEGG: pru:PRU_2674 family 43 glycosyl hydrolase YP_004145972.1 SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; TIGRFAM: DNA topoisomerase IV subunit beta; KEGG: xcb:XC_2536 DNA gyrase subunit beta, carboxyl terminus; region: DNA_gyraseB_C; pfam00986; PFAM: DNA topoisomerase type IIsubunit alpha B region 2 domain protein; ATP-binding region ATPase domain protein; DNA gyrase subunit B domain protein YP_004145973.1 KEGG: xal:XALc_1148 hypothetical protein YP_004145974.1 TIGRFAM: CTP synthase; KEGG: sml:Smlt1711 CTP synthetase; PFAM: CTP synthase-like; glutamine amidotransferase class-I YP_004145975.1 TIGRFAM: enolase; KEGG: xca:xccb100_2559 phosphopyruvate hydratase; PFAM: Enolase-like YP_004145976.1 PFAM: septum formation initiator; KEGG: xcv:XCV1753 cell division protein FtsB YP_004145977.1 KEGG: xal:XALc_1153 probable 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (mep cytidylyltransferase) (mct) protein; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_004145978.1 KEGG: vvy:VV1809 hypothetical protein YP_004145979.1 KEGG: xal:XALc_1154 probable 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (mecdp-synthase) protein; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase YP_004145980.1 PFAM: tRNA pseudouridine synthase D TruD; KEGG: smt:Smal_1456 tRNA pseudouridine synthase D YP_004145981.1 KEGG: xom:XOO_1858 outer membrane antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein YP_004145982.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: xcv:XCV1471 membrane-associated zinc metalloprotease; SMART: PDZ/DHR/GLGF domain protein YP_004145983.1 TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: xcb:XC_2871 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; region: DXP_redisom_C; pfam08436; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain-containing protein YP_004145984.1 PFAM: phosphatidate cytidylyltransferase; KEGG: xal:XALc_2031 Probable phosphatidate cytidylyltransferase. cdp-diglyceride synthetase protein YP_004145985.1 KEGG: xop:PXO_01127 undecaprenyl pyrophosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_004145986.1 KEGG: xal:XALc_2029 probable ribosome recycling factor (rrf) protein; TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor YP_004145987.1 KEGG: smt:Smal_1263 uridylate kinase; TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_004145988.1 SMART: GGDEF domain containing protein; TIGRFAM: diguanylate cyclase; KEGG: xac:XAC1420 hypothetical protein; PFAM: metal-dependent hydrolase HDOD; GGDEF domain containing protein YP_004145989.1 KEGG: xal:XALc_2027 probable elongation factor ts (ef-ts) protein; TIGRFAM: translation elongation factor Ts; PFAM: translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein YP_004145990.1 KEGG: smt:Smal_1266 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2 YP_004145991.1 KEGG: sml:Smlt1513A methionine aminopeptidase; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24 YP_004145992.1 SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: protein-P-II uridylyltransferase; KEGG: xcb:XC_2855 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase/uridylyl-removing (UUR) enzyme, GlnD and related domains; region: ACT_ACR-UUR-like_2; cd04899; PFAM: GlnD PII-uridylyltransferase; DNA polymerase beta domain protein region; metal-dependent phosphohydrolase HD sub domain; amino acid-binding ACT domain protein YP_004145993.1 TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: xca:xccb100_2913 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_004145994.1 KEGG: ccs:CCNA_00989 acyl esterase protein; TIGRFAM: hydrolase CocE/NonD family protein; PFAM: X-Pro dipeptidyl-peptidase domain protein YP_004145995.1 PFAM: arsenate reductase; KEGG: xca:xccb100_2911 ArsC family protein YP_004145996.1 KEGG: xcv:XCV1489 succinyl-diaminopimelate desuccinylase; TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_004145997.1 PFAM: ABC transporter; KEGG: xca:xccb100_0436 ubiquinone biosynthesis protein YP_004145998.1 KEGG: xcv:XCV1490 asparagine synthetase B; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II YP_004145999.1 PFAM: silent information regulator protein Sir2; KEGG: gbr:Gbro_1992 silent information regulator protein Sir2 YP_004146000.1 PFAM: peptidase S45 penicillin amidase; KEGG: smt:Smal_1282 peptidase S45 penicillin amidase YP_004146001.1 KEGG: smt:Smal_1283 bacterioferritin; TIGRFAM: bacterioferritin; PFAM: ferritin YP_004146002.1 KEGG: xcb:XC_2843 S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); region: AdoMet_MTases; cl12011; PFAM: thiopurine S-methyltransferase YP_004146003.1 SMART: DNA gyrase/topoisomerase IV subunit A; TIGRFAM: DNA topoisomerase IV subunit alpha; KEGG: xal:XALc_2012 probable dna topoisomerase IV subunit a protein; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller YP_004146004.1 PFAM: TrkA-C domain protein; citrate transporter; KEGG: xcb:XC_0644 Permease SLC13 (solute carrier 13). the sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is...; region: SLC13_permease; cd01115 YP_004146005.1 TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; ribonuclease B OB region domain; RNA binding S1 domain protein; KEGG: sml:Smlt1534 ribonuclease R (RNase R); SMART: Cold shock protein YP_004146006.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: sml:Smlt1535 hypothetical protein YP_004146007.1 KEGG: xal:XALc_1999 probable tRNA/rRNA methyltransferase protein; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding YP_004146008.1 SMART: GGDEF domain containing protein; TIGRFAM: diguanylate cyclase; KEGG: xcb:XC_2715 I-site; other site; PFAM: GGDEF domain containing protein; Two component regulator three Y domain-containing protein; Two component regulator propeller YP_004146009.1 TIGRFAM: ribonuclease T; PFAM: exonuclease RNase T and DNA polymerase III; KEGG: xal:XALc_1998 probable ribonuclease T (exoribonuclease t) (RNase t) protein; SMART: exonuclease YP_004146010.1 PFAM: protein of unknown function DUF2063; KEGG: xal:XALc_1997 hypothetical protein YP_004146011.1 PFAM: protein of unknown function DUF692; KEGG: xal:XALc_1996 hypothetical protein YP_004146012.1 KEGG: pfo:Pfl01_4832 hypothetical protein YP_004146013.1 KEGG: xca:xccb100_2738 phosphate transporter protein; TIGRFAM: phosphate transporter regulatory protein PhoU; PFAM: PhoU family protein YP_004146014.1 TIGRFAM: phosphate ABC transporter ATPase; PFAM: ABC transporter; KEGG: xal:XALc_1993 probable abc transporter atp-binding protein PstB; SMART: ATPase AAA YP_004146015.1 KEGG: sml:Smlt1550 phosphate ABC transporter permease; TIGRFAM: phosphate ABC transporter inner membrane subunit PstA; PFAM: binding-protein-dependent transporters inner membrane component YP_004146016.1 KEGG: xal:XALc_1991 probable phospate abc transporter permease PstC abc transporter permease; TIGRFAM: phosphate ABC transporter inner membrane subunit PstC; PFAM: binding-protein-dependent transporters inner membrane component YP_004146017.1 KEGG: xca:xccb100_2734 ABC transporter phosphate-binding protein; TIGRFAM: phosphate ABC transporter periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1 YP_004146018.1 KEGG: smt:Smal_1312 phosphate ABC transporter periplasmic phosphate-binding protein; TIGRFAM: phosphate ABC transporter periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1 YP_004146019.1 PFAM: phosphate-selective porin O and P; KEGG: sml:Smlt1555 polyphosphate-selective porin O YP_004146020.1 KEGG: xca:xccb100_0782 exported type II protein secretion system protein N YP_004146021.1 PFAM: general secretion pathway M protein; KEGG: xcv:XCV0765 type II secretion system protein M YP_004146022.1 PFAM: general secretion pathway L; KEGG: xcc:XCC3417 type II secretion system protein L YP_004146023.1 KEGG: xca:xccb100_0779 exported type II protein secretion system protein K YP_004146024.1 TIGRFAM: general secretion pathway protein J; KEGG: xcb:XC_0745 Pseudopilin GspJ; region: GspJ; pfam11612 YP_004146025.1 KEGG: xac:XAC0700 type II secretion system protein I; TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J YP_004146026.1 TIGRFAM: general secretion pathway protein H; KEGG: xca:xccb100_0776 type II secretion system protein H YP_004146027.1 KEGG: xac:XAC0698 type II secretion system protein G; TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G YP_004146028.1 KEGG: xcv:XCV0758 type II secretion system protein F; TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system F domain YP_004146029.1 TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; general secretory system II protein E domain protein; KEGG: xca:xccb100_0773 type II protein secretion system ATPase; SMART: ATPase AAA YP_004146030.1 KEGG: xcb:XC_0739 bacterial type II and III secretion system protein; region: secretin; cl02829; TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein YP_004146031.1 SMART: PDZ/DHR/GLGF domain protein; KEGG: xac:XAC0694 type II secretion system protein C YP_004146032.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xca:xccb100_0769 TonB-dependent outer membrane receptor precursor YP_004146033.1 KEGG: xcv:XCV0753 hypothetical protein YP_004146034.1 SMART: prolyl 4-hydroxylase subunit alpha; manually curated; KEGG: xcb:XC_0735 2OG-Fe(II) oxygenase superfamily; region: 2OG-FeII_Oxy; cl01206; PFAM: 2OG-Fe(II) oxygenase YP_004146035.1 PFAM: Tetracyclin repressor domain-containing protein; regulatory protein TetR; KEGG: pmr:PMI3082 TetR-family transcriptional regulator YP_004146036.1 KEGG: dia:Dtpsy_3372 efflux transporter RND family, MFP subunit; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: hemolysin D family protein YP_004146037.1 PFAM: acriflavin resistance protein; KEGG: rpf:Rpic12D_3471 acriflavin resistance protein YP_004146038.1 PFAM: peptidase M28; KEGG: smt:Smal_1208 peptidase M28 YP_004146039.1 SMART: HhH-GPD family protein; TIGRFAM: endonuclease III; KEGG: xal:XALc_1987 probable endonuclease III protein; PFAM: HhH-GPD family protein; iron-sulfur cluster loop YP_004146040.1 KEGG: xop:PXO_00781 hypothetical protein YP_004146041.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: xca:xccb100_2726 enoyl-CoA hydratase/isomerase family protein YP_004146042.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: sml:Smlt1559 peptidyl-prolyl cis-trans isomerase YP_004146043.1 PFAM: NUDIX hydrolase; protein of unknown function DUF1289; KEGG: xal:XALc_1983 NUDIX hydrolase family transmembrane protein YP_004146044.1 KEGG: xal:XALc_1982 probable thiosulfate sulfurtransferase protein; PFAM: rhodanese; SMART: Rhodanese domain protein YP_004146045.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ank:AnaeK_3357 short-chain dehydrogenase/reductase SDR YP_004146046.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ajs:Ajs_0158 LysR family transcriptional regulator YP_004146047.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: xal:XALc_0912 enoyl-CoA hydratase/isomerase protein YP_004146048.1 PFAM: protein of unknown function DUF461; KEGG: xal:XALc_0913 hypothetical protein YP_004146049.1 PFAM: UspA domain-containing protein; KEGG: rme:Rmet_2212 hypothetical protein YP_004146050.1 PFAM: thioesterase superfamily protein; KEGG: smt:Smal_1117 thioesterase superfamily protein YP_004146051.1 KEGG: sml:Smlt1277 excinuclease ABC subunit A; TIGRFAM: excinuclease ABC subunit A; PFAM: ABC transporter YP_004146052.1 KEGG: xca:xccb100_3189 50S ribosomal protein L21; TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21 YP_004146053.1 KEGG: xop:PXO_05534 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27 YP_004146054.1 KEGG: xal:XALc_0918 gtp binding protein; TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related YP_004146055.1 KEGG: xca:xccb100_3186 30S ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20 YP_004146056.1 KEGG: xal:XALc_0920 Probable virulence factor MviN homolog. transmembrane protein; TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein YP_004146057.1 KEGG: smt:Smal_1124 bifunctional riboflavin kinase/FMN adenylyltransferase; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; riboflavin kinase YP_004146058.1 KEGG: xac:XAC1254 isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase YP_004146059.1 TIGRFAM: lipoprotein signal peptidase; KEGG: xca:xccb100_3182 lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II YP_004146060.1 TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; KEGG: sml:Smlt1342 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein YP_004146061.1 PFAM: MscS Mechanosensitive ion channel; KEGG: bbr:BB1859 hypothetical protein YP_004146062.1 PFAM: ADP-ribosylation/crystallin J1; KEGG: pfl:PFL_4115 ADP-ribosylglycohydrolase family protein YP_004146063.1 KEGG: xcv:XCV1701 hypothetical protein YP_004146064.1 KEGG: nph:NP4134A branched-chain/neutral amino acids ABC transporter permease YP_004146065.1 KEGG: sml:Smlt1366 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: ATPase AAA YP_004146066.1 KEGG: psp:PSPPH_0781 hemagglutination activity domain-containing protein; TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein YP_004146067.1 PFAM: polypeptide-transport-associated domain protein ShlB-type; KEGG: psp:PSPPH_0780 OMP85 family outer membrane protein YP_004146068.1 PFAM: cytochrome C assembly protein; KEGG: xca:xccb100_3146 hypothetical protein YP_004146069.1 KEGG: smt:Smal_1289 drug resistance transporter EmrB/QacA subfamily; TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1 YP_004146070.1 PFAM: hemolysin D; KEGG: xcv:XCV1501 membrane fusion protein YP_004146071.1 KEGG: xal:XALc_2009 outer membrane efflux protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein YP_004146072.1 KEGG: smt:Smal_1286 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_004146073.1 TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; Signal peptide binding (SRP54) M- domain protein; KEGG: smt:Smal_1150 signal recognition particle protein; SMART: ATPase AAA YP_004146074.1 PFAM: aminotransferase class IV; KEGG: xfa:XF0075 hypothetical protein YP_004146075.1 PFAM: acriflavin resistance protein; KEGG: smt:Smal_3612 acriflavin resistance protein YP_004146076.1 PFAM: acriflavin resistance protein; KEGG: smt:Smal_3611 acriflavin resistance protein YP_004146077.1 KEGG: smt:Smal_3610 efflux transporter RND family, MFP subunit; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: hemolysin D family protein YP_004146078.1 KEGG: xca:xccb100_3140 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16 YP_004146079.1 KEGG: sml:Smlt1375 16S rRNA-processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein YP_004146080.1 TIGRFAM: tRNA (guanine-N1)-methyltransferase; KEGG: xal:XALc_0954 probable tRNA (guanine-n(1)-)-methyltransferase (m1g-methyltransferase) (tRNA gm37 methyltransferase) protein; PFAM: tRNA (guanine-N1-)-methyltransferase YP_004146081.1 KEGG: sml:Smlt1377 50S ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19 YP_004146082.1 KEGG: scl:sce5126 hypothetical protein YP_004146083.1 KEGG: cti:RALTA_A1184 outer membrane protein H.8 precursor YP_004146084.1 KEGG: smt:Smal_1162 RNA-binding S4 domain protein; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_004146085.1 KEGG: smt:Smal_2458 hypothetical protein YP_004146086.1 KEGG: dac:Daci_2373 hypothetical protein YP_004146087.1 KEGG: sno:Snov_4167 catalase/peroxidase HPI; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase YP_004146088.1 KEGG: psa:PST_0947 cytochrome C551 peroxidase precursor; PFAM: Di-haem cytochrome C peroxidase YP_004146089.1 KEGG: aav:Aave_2089 helix-turn-helix, type 11 domain-containing protein YP_004146090.1 PFAM: glutathione S-transferase domain; KEGG: xac:XAC1299 glutathione S-transferase YP_004146091.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: scl:sce1821 hypothetical protein YP_004146092.1 TIGRFAM: DNA mismatch repair protein MutS; PFAM: MutS III domain protein; DNA mismatch repair protein MutS; MutS II domain protein; MutS IV domain protein; KEGG: xal:XALc_2230 dna mismatch repair protein, atpase; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein YP_004146093.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sml:Smlt1425 GGDEF family signalling protein; SMART: GGDEF domain containing protein YP_004146094.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_2896 TonB-dependent outer membrane receptor YP_004146095.1 KEGG: xac:XAC1317 cobalt-zinc-cadmium resistance protein; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein YP_004146096.1 PFAM: damage inducible protein CinA; KEGG: xac:XAC1737 hypothetical protein YP_004146097.1 KEGG: xac:XAC1738 ubiquinone biosynthesis protein; TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC transporter YP_004146098.1 SMART: hypothetical protein; KEGG: kko:Kkor_0095 XRE family transcriptional regulator YP_004146099.1 KEGG: gob:Gobs_0436 serine/threonine protein kinase; membrane protein YP_004146100.1 KEGG: xcv:XCV1772 LexA repressor; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24/S26A/S26B, conserved region YP_004146101.1 TIGRFAM: recA protein; PFAM: RecA domain protein; KEGG: sml:Smlt1741 recombinase A; SMART: ATPase AAA YP_004146102.1 PFAM: TfoX domain-containing protein; KEGG: bch:Bcen2424_6391 TfoX domain-containing protein YP_004146103.1 PFAM: regulatory protein RecX; KEGG: smt:Smal_1477 recombination regulator RecX YP_004146104.1 KEGG: smt:Smal_1478 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1 YP_004146105.1 KEGG: xop:PXO_00146 carbon storage regulator; TIGRFAM: carbon storage regulator; PFAM: carbon storage regulator YP_004146106.1 KEGG: xcv:XCV1783 hypothetical protein YP_004146107.1 KEGG: sml:Smlt1767 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1 YP_004146108.1 KEGG: pla:Plav_1668 sulfate transporter; TIGRFAM: sulfate transporter; PFAM: sulfate transporter; sulfate transporter/antisigma-factor antagonist STAS YP_004146109.1 PFAM: protein of unknown function DUF1275; KEGG: sml:Smlt1768 transmembrane protein YP_004146110.1 KEGG: swi:Swit_0641 XRE family transcriptional regulator YP_004146111.1 KEGG: smt:Smal_1508 PhoH family protein; PFAM: PhoH family protein; SMART: nucleotide binding protein PINc YP_004146112.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: xal:XALc_1182 hypothetical AhpC/tsa family peroxiredoxin protein YP_004146113.1 PFAM: amino acid-binding ACT domain protein; KEGG: sml:Smlt1772 glycine cleavage system transcriptional repressor YP_004146114.1 KEGG: xcv:XCV1791 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase YP_004146115.1 KEGG: xom:XOO_2773 hypothetical protein YP_004146116.1 KEGG: xca:xccb100_2518 hypothetical protein YP_004146117.1 KEGG: xal:XALc_1187 probable 2-dehydro-3-deoxygalactonokinase protein; PFAM: 2-keto-3-deoxy-galactonokinase YP_004146118.1 PFAM: SMP-30/gluconolaconase/LRE-like region-containing protein; KEGG: xcb:XC_2489 SMP-30/gluconolaconase/LRE-like region; region: SGL; pfam08450 YP_004146119.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: xal:XALc_1189 probable galactonate dehydratase protein YP_004146120.1 PFAM: KDPG and KHG aldolase; KEGG: xal:XALc_1190 probable 2-dehydro-3-deoxy-6-phosphogalactonate aldolase protein YP_004146121.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: xca:xccb100_2513 LysR family transcriptional regulator YP_004146122.1 KEGG: xca:xccb100_2512 TonB-dependent outer membrane receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004146123.1 KEGG: xca:xccb100_2511 TonB-dependent outer membrane receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004146124.1 KEGG: xac:XAC1770 cellulase YP_004146125.1 PFAM: protein of unknown function DUF303 acetylesterase; glycoside hydrolase family 2 sugar binding; KEGG: xcv:XCV1803 sialate O-acetylesterase YP_004146126.1 PFAM: glycoside hydrolase family 35; KEGG: xcb:XC_2481 beta-galactosidase; region: glyco_hydro_42; cl03154 YP_004146127.1 KEGG: xca:xccb100_2507 exported alpha-glucosidase; PFAM: glycoside hydrolase family 31; SMART: PA14 domain protein YP_004146128.1 KEGG: xcv:XCV1806 hypothetical protein YP_004146129.1 TIGRFAM: sugar transporter; KEGG: ttu:TERTU_0386 MFS transporter SP family YP_004146130.1 KEGG: xac:XAC1783 polynucleotide adenyltransferase; TIGRFAM: poly(A) polymerase; PFAM: polynucleotide adenylyltransferase region YP_004146131.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; KEGG: smt:Smal_1516 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK YP_004146132.1 TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; KEGG: xal:XALc_1205 probable 3-methyl-2-oxobutanoate hydroxymethyltransferase (Ketopantoate hydroxymethyltransferase) protein; PFAM: Ketopantoate hydroxymethyltransferase YP_004146133.1 KEGG: xal:XALc_1206 probable pantoate--beta-alanine ligase protein; TIGRFAM: pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase YP_004146134.1 TIGRFAM: aspartate 1-decarboxylase; KEGG: xca:xccb100_2493 aspartate alpha-decarboxylase; PFAM: aspartate decarboxylase YP_004146135.1 KEGG: xac:XAC1788 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI) YP_004146136.1 KEGG: smt:Smal_0945 hypothetical protein YP_004146137.1 KEGG: xal:XALc_2148 phospholipase/carboxylesterase protein YP_004146138.1 PFAM: ATP dependent DNA ligase; KEGG: vei:Veis_3497 DNA ligase YP_004146139.1 KEGG: sml:Smlt1103 MgtE/divalent cation transmembrane transporter protein; TIGRFAM: magnesium transporter; PFAM: MgtE intracellular region; CBS domain containing protein; MgtE integral membrane region YP_004146140.1 KEGG: xal:XALc_2146 phosphotransferase system (pts), enzymeIprotein; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region YP_004146141.1 KEGG: sml:Smlt1105 phosphocarrier protein HPr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr YP_004146142.1 PFAM: PTS system fructose subfamily IIA component; KEGG: sml:Smlt1106 IIa component of sugar transport PTS system YP_004146143.1 KEGG: xal:XALc_2143 uncharacterised p-loop atpase protein YP_004146144.1 PFAM: HPr serine kinase domain-containing protein; KEGG: xca:xccb100_1355 HPr kinase/phosphorylase YP_004146145.1 KEGG: xal:XALc_2141 sigma-54 modulation protein; TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA YP_004146146.1 KEGG: xac:XAC2972 RNA polymerase factor sigma-54; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor YP_004146147.1 KEGG: xal:XALc_2139 probable abc transporter atp-binding protein; PFAM: ABC transporter; SMART: ATPase AAA YP_004146148.1 KEGG: xac:XAC2970 hypothetical protein; TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein YP_004146149.1 PFAM: protein of unknown function DUF1239; KEGG: xcv:XCV3115 hypothetical protein YP_004146150.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: xal:XALc_2136 probable 3-deoxy-manno-octulosonate-8-phosphatase protein YP_004146151.1 TIGRFAM: KpsF/GutQ family protein; KEGG: xal:XALc_2135 sugar phosphate isomerase involved in capsule formation, KpsF/gutq protein; PFAM: sugar isomerase (SIS); CBS domain containing protein YP_004146152.1 PFAM: BolA family protein; KEGG: sml:Smlt1118 BolA-like protein YP_004146153.1 KEGG: xcb:XC_1318 active site; other site; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_004146154.1 KEGG: smt:Smal_0962 hypothetical protein YP_004146155.1 KEGG: xal:XALc_2130 hypothetical protein YP_004146156.1 KEGG: xal:XALc_2129 hypothetical protein YP_004146157.1 KEGG: xal:XALc_2128 phosphoribosylglycinamide formyltransferase protein; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase YP_004146158.1 KEGG: xop:PXO_02240 hypothetical protein YP_004146159.1 TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; KEGG: xal:XALc_2126 phosphoribosylaminoimidazole synthetase protein; PFAM: AIR synthase related protein domain protein; AIR synthase related protein YP_004146160.1 PFAM: protein of unknown function DUF2066; KEGG: xca:xccb100_1372 hypothetical protein YP_004146161.1 PFAM: protein of unknown function UPF0118; KEGG: xca:xccb100_1373 permease (PerM) family protein YP_004146162.1 TIGRFAM: DnaA regulatory inactivator Hda; KEGG: sml:Smlt1129 hypothetical protein YP_004146163.1 KEGG: sfr:Sfri_1073 hypothetical protein YP_004146164.1 PFAM: nucleotidyl transferase; KEGG: sml:Smlt1130 nucleotidyl transferase YP_004146165.1 PFAM: aminoglycoside phosphotransferase; KEGG: xca:xccb100_1376 phosphotransferase family protein YP_004146166.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: xca:xccb100_1378 hypothetical protein YP_004146167.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; KEGG: xom:XOO_1207 DNA transport competence protein YP_004146168.1 PFAM: protein of unknown function DUF886; KEGG: sml:Smlt1137 hypothetical protein YP_004146169.1 PFAM: flavodoxin/nitric oxide synthase; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: smt:Smal_0983 flavodoxin/nitric oxide synthase YP_004146170.1 PFAM: ApbE family lipoprotein; KEGG: xca:xccb100_1383 thiamine biosynthesis protein YP_004146171.1 PFAM: nickel transport complex, NikM subunit, transmembrane; KEGG: xac:XAC2946 hypothetical protein YP_004146172.1 KEGG: xcb:XC_1337 predicted periplasmic protein (DUF2271); region: DUF2271; cl01469 YP_004146173.1 KEGG: xcb:XC_1338 uncharacterized protein conserved in bacteria [function unknown]; region: COG3295; COG3295 YP_004146174.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cja:CJA_2539 exogenous ferric siderophore TonB-dependent receptor YP_004146175.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: smt:Smal_0994 Rieske (2Fe-2S) domain protein YP_004146176.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xca:xccb100_1391 acetyltransferase (GNAT) family protein YP_004146177.1 TIGRFAM: cysteine desulfurase, SufS subfamily; KEGG: xcv:XCV3082 cysteine desulfurase; PFAM: aminotransferase class V YP_004146178.1 KEGG: sml:Smlt1154 hypothetical protein; TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein YP_004146179.1 TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: xca:xccb100_1394 ABC transporter-like ATPase involved in Fe-S cluster assembly; SMART: ATPase AAA YP_004146180.1 KEGG: xop:PXO_01979 cysteine desulfurase activator complex subunit SufB; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein YP_004146181.1 KEGG: xal:XALc_1032 hypothetical transcriptional regulator, rrf2 family transcription regulator protein; TIGRFAM: FeS assembly SUF system regulator; transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074 YP_004146182.1 KEGG: xop:PXO_01981 nuclear protein SET; PFAM: nuclear protein SET; SMART: nuclear protein SET YP_004146183.1 KEGG: xcb:XC_1351 hypothetical protein YP_004146184.1 KEGG: xca:xccb100_1400 hypothetical protein YP_004146185.1 KEGG: xom:XOO_1295 hypothetical protein YP_004146186.1 PFAM: peptidase M23; KEGG: xca:xccb100_1402 membrane-bound metalloendopeptidase YP_004146187.1 KEGG: xal:XALc_1035 bacterial dna-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein YP_004146188.1 KEGG: reh:H16_B2342 cinnamoyl ester hydrolase YP_004146189.1 KEGG: mno:Mnod_2225 biotin carboxylase YP_004146190.1 KEGG: sml:Smlt1174 alpha-glucosidase AglA; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_004146191.1 PFAM: glycoside hydrolase 97; KEGG: xcb:XC_1645 glycoside hydrolase 97; region: glyco_hydro_97; pfam10566 YP_004146192.1 KEGG: sro:Sros_3338 type II secretory pathway pullulanase PulA and related glycosidase-like protein; TIGRFAM: alpha-1,6-glucosidase, pullulanase-type; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region YP_004146193.1 PFAM: major facilitator superfamily MFS_1; KEGG: smt:Smal_1021 major facilitator superfamily MFS_1 YP_004146194.1 KEGG: sml:Smlt1179 cyclomaltodextrin glucanotransferase precursor; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_004146195.1 KEGG: sml:Smlt1186 LacI family regulatory protein; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_004146196.1 KEGG: xal:XALc_1071 probable threonyl-tRNA synthetase (threonine--tRNA ligase) protein; TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); threonyl/alanyl tRNA synthetase SAD; TGS domain-containing protein; anticodon-binding domain protein YP_004146197.1 KEGG: smt:Smal_2804 translation initiation factor IF-3; TIGRFAM: translation initiation factor IF-3; PFAM: translation initiation factor 3-like YP_004146198.1 KEGG: xal:XALc_1073 probable 50s ribosomal protein L35 (ribosomal protein a); TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35 YP_004146199.1 KEGG: smt:Smal_2802 50S ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20 YP_004146200.1 KEGG: smt:Smal_2801 phenylalanyl-tRNA synthetase subunit alpha; TIGRFAM: phenylalanyl-tRNA synthetase, subunit alpha; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein YP_004146201.1 KEGG: sml:Smlt3373 phenylalanyl-tRNA synthetase subunit beta; TIGRFAM: phenylalanyl-tRNA synthetase subunit beta YP_004146202.1 TIGRFAM: integration host factor, subunit alpha; PFAM: histone family protein DNA-binding protein; KEGG: xal:XALc_1076 integration host factor alpha-subunit (ihf-alpha) protein; SMART: histone family protein DNA-binding protein YP_004146203.1 KEGG: xal:XALc_1077 transcriptional regulator transcription regulator protein; PFAM: regulatory protein MerR; SMART: regulatory protein MerR YP_004146204.1 KEGG: pzu:PHZ_c0979 hypothetical protein YP_004146205.1 PFAM: integrase family protein; KEGG: pag:PLES_23661 phage integrase YP_004146206.1 KEGG: plu:plu2946 hypothetical protein YP_004146207.1 KEGG: rba:RB10770 type I restriction enzyme EcoKI subunit R YP_004146208.1 KEGG: pfo:Pfl01_1566 CheA signal transduction histidine kinases (STHK) YP_004146209.1 KEGG: smt:Smal_2526 hypothetical protein YP_004146210.1 KEGG: xfm:Xfasm12_0743 single-stranded DNA-binding protein YP_004146211.1 KEGG: slt:Slit_1947 hypothetical protein YP_004146212.1 KEGG: pde:Pden_3739 phage-related protein; TIGRFAM: phage-type endonuclease; PFAM: YqaJ viral recombinase family YP_004146213.1 KEGG: vei:Veis_3726 hypothetical protein YP_004146214.1 KEGG: sme:SMa0630 hypothetical protein YP_004146215.1 KEGG: cre:CHLREDRAFT_205932 hypothetical protein YP_004146216.1 KEGG: dac:Daci_2326 MscS mechanosensitive ion channel YP_004146217.1 KEGG: asa:ASA_P4G021 hypothetical protein YP_004146218.1 KEGG: reu:Reut_B4231 glycoside hydrolase family protein YP_004146219.1 KEGG: xfa:XF0696 phage-related repressor protein; PFAM: hypothetical protein; SMART: hypothetical protein YP_004146220.1 KEGG: xfa:XF0697 hypothetical protein YP_004146221.1 KEGG: dge:Dgeo_1601 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004146222.1 KEGG: lma:LmjF24.0980 hypothetical protein YP_004146223.1 KEGG: acr:Acry_0581 hypothetical protein YP_004146224.1 KEGG: fal:FRAAL4633 oxidoreductase; short-chain type dehydrogenase/reductase YP_004146226.1 KEGG: hvo:HVO_0670 glutathione S-transferase YP_004146227.1 KEGG: mbr:MONBRDRAFT_23009 hypothetical protein YP_004146228.1 KEGG: bfu:BC1G_15271 hypothetical protein YP_004146229.1 KEGG: rpt:Rpal_3918 exported protein of unknown function YP_004146230.1 KEGG: dac:Daci_3219 hypothetical protein YP_004146231.1 PFAM: DnaB domain protein helicase; KEGG: xop:PXO_04796 replicative DNA helicase YP_004146232.1 KEGG: lxx:Lxx25210 hypothetical protein YP_004146233.1 PFAM: endodeoxyribonuclease RusA; KEGG: xfa:XF1666 hypothetical protein YP_004146234.1 KEGG: oan:Oant_3509 OmpA/MotB domain-containing protein YP_004146235.1 KEGG: xfm:Xfasm12_1313 hypothetical protein YP_004146236.1 KEGG: par:Psyc_0440 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin YP_004146237.1 KEGG: gsu:GSU1422 nuclease SbcCD, C subunit YP_004146238.1 KEGG: rsq:Rsph17025_0610 phosphoenolpyruvate-protein phosphotransferase YP_004146239.1 KEGG: saq:Sare_0649 dihydropteroate synthase YP_004146240.1 KEGG: rhi:NGR_c14070 hypothetical protein YP_004146241.1 KEGG: rce:RC1_2585 outer membrane protein OmpA (probable proton motor MotY) YP_004146242.1 KEGG: bxe:Bxe_C1066 diguanylate cyclase YP_004146243.1 KEGG: rle:RL3939 phage-related protein YP_004146244.1 KEGG: zmn:Za10_0862 phage terminase, large subunit, PBSX family; TIGRFAM: phage terminase, large subunit, PBSX family; PFAM: terminase large subunit YP_004146245.1 KEGG: xfm:Xfasm12_0907 hypothetical protein YP_004146246.1 KEGG: mea:Mex_1p3992 hypothetical protein YP_004146247.1 KEGG: mea:Mex_1p3993 hypothetical protein YP_004146248.1 KEGG: mpt:Mpe_A0758 hypothetical protein YP_004146249.1 KEGG: pvx:PVX_123170 hypothetical protein YP_004146250.1 KEGG: xfm:Xfasm12_0904 hypothetical protein YP_004146251.1 KEGG: gdi:GDI_3678 phage stabilisation protein; region: Phage_stabilize; pfam11134 YP_004146252.1 KEGG: bav:BAV0420 phage protein YP_004146253.1 KEGG: xfm:Xfasm12_0901 hypothetical protein YP_004146254.1 KEGG: ctt:CtCNB1_2993 hypothetical protein YP_004146255.1 KEGG: har:HEAR3038 hypothetical protein YP_004146256.1 KEGG: rha:RHA1_ro04951 DNA repair helicase YP_004146257.1 KEGG: xfm:Xfasm12_0898 hypothetical protein YP_004146258.1 KEGG: sco:SCO5818 ABC transporter YP_004146259.1 KEGG: bph:Bphy_3402 triple helix repeat-containing collagen YP_004146260.1 KEGG: par:Psyc_1014 hypothetical protein YP_004146261.1 PFAM: GumN family protein; KEGG: xac:XAC2572 GumN protein YP_004146262.1 KEGG: xac:XAC2565 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: transketolase central region; transketolase domain-containing protein YP_004146263.1 KEGG: xal:XALc_1083 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease YP_004146264.1 KEGG: smt:Smal_2776 hypothetical protein YP_004146265.1 PFAM: lipocalin; KEGG: xoo:XOO3161 outer membrane lipoprotein Blc YP_004146267.1 KEGG: sml:Smlt1804 hypothetical protein YP_004146268.1 PFAM: Fe(II) trafficking protein YggX; KEGG: smt:Smal_1544 hypothetical protein YP_004146269.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; KEGG: xca:xccb100_1748 A/G-specific adenine glycosylase; SMART: HhH-GPD family protein YP_004146270.1 TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; KEGG: smt:Smal_1546 signal recognition particle-docking protein FtsY; SMART: AAA ATPase YP_004146271.1 TIGRFAM: methyltransferase; KEGG: xal:XALc_1944 methyltransferase protein; PFAM: Conserved hypothetical protein CHP00095 YP_004146272.1 TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; KEGG: xal:XALc_1943 phosphopantetheine adenylyltransferase (pantetheine-phosphate adenylyltransferase) (PpaT) (dephospho-coa pyrophosphorylase) protein; PFAM: cytidylyltransferase YP_004146273.1 KEGG: sml:Smlt1812 hypothetical protein YP_004146274.1 KEGG: smt:Smal_1552 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_004146275.1 TIGRFAM: gamma-glutamyltransferase; KEGG: xac:XAC2523 gamma-glutamyltranspeptidase; PFAM: gamma-glutamyltranspeptidase YP_004146276.1 KEGG: smt:Smal_1554 beta-lactamase YP_004146277.1 PFAM: glycoside hydrolase family 9; KEGG: xcv:XCV2704 cellulase precursor YP_004146278.1 KEGG: xac:XAC2521 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_004146279.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cse:Cseg_0861 TonB-dependent receptor YP_004146280.1 PFAM: NHL repeat containing protein; KEGG: xcb:XC_1730 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [lipid metabolism]; region: Phy; COG4247 YP_004146281.1 PFAM: metallophosphoesterase; Fibronectin type III domain protein; KEGG: xac:XAC2518 hypothetical protein YP_004146282.1 KEGG: sml:Smlt1823 inorganic pyrophosphatase; PFAM: inorganic pyrophosphatase YP_004146283.1 PFAM: aminotransferase class-III; KEGG: xcv:XCV2698 ornithine/acetylornithine aminotransferase YP_004146284.1 KEGG: xcv:XCV2697 AsnC family transcriptional regulator; PFAM: transcription regulator AsnC-type-like; regulatory protein MarR; SMART: transcription regulator AsnC-type YP_004146285.1 KEGG: sml:Smlt2008 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein YP_004146286.1 TIGRFAM: lysine 2,3-aminomutase YodO family protein; KEGG: xca:xccb100_1905 radical SAM superfamily protein; PFAM: radical SAM domain protein YP_004146287.1 KEGG: xal:XALc_1921 probable elongation factor P protein; TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor P/YeiP protein; Elongation factor KOW-like domain-containing protein YP_004146288.1 PFAM: amidohydrolase; KEGG: xcv:XCV2575 N-ethylammeline chlorohydrolase YP_004146289.1 KEGG: xcv:XCV2574 3-demethylubiquinone-9 3-methyltransferase; TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: methyltransferase type 11 YP_004146290.1 KEGG: xop:PXO_00378 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_004146291.1 KEGG: sml:Smlt3312 hypothetical protein YP_004146292.1 KEGG: pfs:PFLU6088 GTP cyclohydrolase; PFAM: protein of unknown function DUF198 YP_004146293.1 KEGG: smt:Smal_3549 outer membrane autotransporter barrel domain protein; TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Autotransporter beta- domain protein YP_004146294.1 KEGG: ncr:NCU02087 hypothetical protein YP_004146295.1 PFAM: peptidase M23; KEGG: xca:xccb100_1920 metalloendopeptidase YP_004146296.1 PFAM: amidohydrolase; KEGG: smt:Smal_2736 dihydroorotase YP_004146297.1 PFAM: protein of unknown function DUF37; KEGG: smt:Smal_2735 hypothetical protein YP_004146298.1 TIGRFAM: RNA polymerase-binding protein DksA; KEGG: smt:Smal_2734 TraR/DksA family transcriptional regulator YP_004146299.1 PFAM: major facilitator superfamily MFS_1; KEGG: xcv:XCV2555 major facilitator superfamily protein YP_004146300.1 PFAM: Fe-S metabolism associated SufE; KEGG: xac:XAC2355 hypothetical protein YP_004146301.1 TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR YP_004146302.1 KEGG: smt:Smal_2730 hypothetical protein YP_004146303.1 PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; KEGG: xca:xccb100_1930 N-acetylornithine carbamoyltransferase YP_004146304.1 TIGRFAM: argininosuccinate synthase; KEGG: xoo:XOO2675 argininosuccinate synthase; PFAM: argininosuccinate synthase YP_004146305.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dac:Daci_4814 GCN5-related N-acetyltransferase YP_004146306.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xop:PXO_00351 acetyltransferase, GNAT family YP_004146307.1 PFAM: peptidase dimerisation domain protein; peptidase M20; KEGG: xcv:XCV2548 acetylornithine deacetylase YP_004146308.1 KEGG: xca:xccb100_1934 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: protein of unknown function DUF619; aspartate/glutamate/uridylate kinase YP_004146309.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xac:XAC2347 amino-acid acetyltransferase YP_004146310.1 TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: xac:XAC2346 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: semialdehyde dehydrogenase NAD - binding; semialdehyde dehydrogenase dimerisation region YP_004146311.1 KEGG: xal:XALc_1889 probable argininosuccinate lyase (arginosuccinase) (asal) protein; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase YP_004146312.1 PFAM: YCII-related; KEGG: smt:Smal_2722 YCII-related YP_004146313.1 TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; KEGG: xca:xccb100_1940 gamma-glutamyl kinase; SMART: PUA domain containing protein YP_004146314.1 TIGRFAM: gamma-glutamyl phosphate reductase; KEGG: xac:XAC2342 gamma-glutamyl phosphate reductase; PFAM: aldehyde dehydrogenase YP_004146315.1 PFAM: major facilitator superfamily MFS_1; KEGG: xca:xccb100_1945 MFS importer for monocarboxylates or cyanate YP_004146316.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sml:Smlt2126 transmembrane protein YP_004146317.1 KEGG: xal:XALc_1217 probable udp-N-acetylenolpyruvoylglucosamine reductase protein; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain-containing protein; FAD linked oxidase domain protein YP_004146318.1 TIGRFAM: dihydroorotate dehydrogenase; KEGG: xal:XALc_1218 dihydroorotate dehydrogenase (dihydroorotate oxidase) protein; PFAM: dihydroorotate oxidase YP_004146319.1 KEGG: xop:PXO_00810 hypothetical protein YP_004146320.1 PFAM: metallophosphoesterase; KEGG: swi:Swit_3589 metallophosphoesterase YP_004146321.1 PFAM: aldehyde dehydrogenase; KEGG: sml:Smlt2132 aldehyde dehydrogenase YP_004146322.1 KEGG: smt:Smal_4012 hypothetical protein YP_004146323.1 KEGG: lba:Lebu_1120 ion transport 2 domain protein YP_004146324.1 KEGG: rme:Rmet_1119 FecR YP_004146325.1 KEGG: eok:G2583_0641 carbamate kinase YP_004146326.1 KEGG: nwa:Nwat_2878 cold-shock DNA-binding domain-containing protein; PFAM: protein of unknown function DUF1294; Cold-shock protein DNA-binding; SMART: Cold shock protein YP_004146327.1 KEGG: pat:Patl_2413 hypothetical protein YP_004146328.1 KEGG: xcv:XCV1866 bifunctional aspartokinase I/homeserine dehydrogenase I; TIGRFAM: aspartate kinase; PFAM: homoserine dehydrogenase; aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding YP_004146329.1 KEGG: xcc:XCC1801 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: GHMP kinase; GHMP kinase domain protein YP_004146330.1 TIGRFAM: threonine synthase; KEGG: xcc:XCC1803 threonine synthase; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta YP_004146331.1 PFAM: NUDIX hydrolase; KEGG: xca:xccb100_2018 NUDIX hydrolase family protein, probable YP_004146332.1 KEGG: xal:XALc_1641 3-hydroxybutyrate dehydrogenase precursor protein; TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR YP_004146333.1 KEGG: smt:Smal_2417 CDP-diacylglycerol/serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_004146334.1 KEGG: xac:XAC2047 PHA synthase subunit YP_004146335.1 KEGG: xal:XALc_1638 poly (3-hydroxybutyric acid) synthase protein; TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; PFAM: alpha/beta hydrolase fold YP_004146336.1 KEGG: sml:Smlt2963 hypothetical protein YP_004146337.1 PFAM: PspC domain protein; KEGG: xca:xccb100_2023 hypothetical protein YP_004146338.1 KEGG: xac:XAC2050 hypothetical protein YP_004146339.1 KEGG: xfa:XF2164 hypothetical protein YP_004146340.1 KEGG: vvy:VV1252 formate-dependent nitrite reductase complex, Fe-S protein YP_004146341.1 PFAM: cysteine dioxygenase type I; KEGG: smt:Smal_0030 cysteine dioxygenase type I YP_004146342.1 TIGRFAM: homoserine O-acetyltransferase; KEGG: sml:Smlt3277 homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold YP_004146343.1 KEGG: xal:XALc_1290 C-type cytochrome biogenesis protein YP_004146344.1 PFAM: cytochrome C biogenesis protein; KEGG: xac:XAC2330 C-type cytochrome biogenesis protein YP_004146345.1 KEGG: smt:Smal_2705 periplasmic protein thiol/disulphide oxidoreductase DsbE; TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: redoxin YP_004146346.1 KEGG: sml:Smlt3273 cytochrome C biogenesis protein; TIGRFAM: cytochrome C biogenesis protein CcmF; PFAM: cytochrome C assembly protein YP_004146347.1 PFAM: CcmE/CycJ protein; KEGG: xca:xccb100_1957 cytochrome c-type biogenesis protein CcmE YP_004146348.1 TIGRFAM: heme exporter protein CcmD; KEGG: xca:xccb100_1958 hypothetical protein YP_004146349.1 KEGG: xac:XAC2325 ABC transporter heme permease; TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome C assembly protein YP_004146350.1 KEGG: xac:XAC2324 ABC transporter heme permease; TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome C biogenesis protein CcmB YP_004146351.1 TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; KEGG: xca:xccb100_1961 cytochrome C biogenesis protein CcmA; SMART: ATPase AAA YP_004146352.1 KEGG: tkm:TK90_0528 hypothetical protein YP_004146353.1 PFAM: aminotransferase class I and II; KEGG: xac:XAC2322 aminotransferase YP_004146354.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sml:Smlt3266 carbon-nitrogen hydrolase YP_004146355.1 KEGG: xca:xccb100_1965 hypothetical protein YP_004146356.1 KEGG: xal:XALc_1309 probable ribosomal large subunit pseudouridine synthase B (rRNA pseudouridylate synthase b) protein; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein YP_004146357.1 KEGG: xal:XALc_1310 hypothetical protein; TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB YP_004146358.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: xca:xccb100_1968 hypothetical protein YP_004146359.1 PFAM: YCII-related; KEGG: xal:XALc_1312 hypothetical protein YP_004146360.1 KEGG: smt:Smal_2686 transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_004146361.1 PFAM: TonB-dependent receptor; KEGG: xcb:XC_1910 Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. classical (gram-negative ) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,...; region: OM_channels; cl00284 YP_004146362.1 KEGG: xcb:XC_1911 uncharacterized protein conserved in bacteria (DUF2329); region: DUF2329; pfam10091 YP_004146363.1 PFAM: extracellular solute-binding protein family 1; KEGG: sml:Smlt3252 substrate-binding component of ABC transporter YP_004146364.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sml:Smlt3251 permease of ABC transporter YP_004146365.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: smt:Smal_2681 monosaccharide-transporting ATPase YP_004146366.1 PFAM: coagulation factor 5/8 type domain protein; KEGG: xcv:XCV2505 hypothetical protein YP_004146367.1 TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; KEGG: xcb:XC_1973 catalytic residue; other site; PFAM: KDPG and KHG aldolase YP_004146368.1 TIGRFAM: 6-phosphogluconate dehydratase; KEGG: xal:XALc_1833 dihydroxy-acid and 6-phosphogluconate dehydratase protein; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_004146369.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: xal:XALc_1832 6-phosphogluconolactonase protein YP_004146370.1 TIGRFAM: glucokinase; KEGG: sml:Smlt1792 glucokinase; PFAM: glucokinase YP_004146371.1 TIGRFAM: glucose-6-phosphate 1-dehydrogenase; KEGG: xac:XAC2071 glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase YP_004146372.1 KEGG: xcv:XCV2238 sugar ABC transporter ATP-binding protein; PFAM: ABC transporter; transport-associated OB domain-containing protein; SMART: ATPase AAA YP_004146373.1 KEGG: smt:Smal_1533 folate-binding protein YgfZ; TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel YP_004146374.1 PFAM: protein of unknown function DUF1674; KEGG: xca:xccb100_2045 hypothetical protein YP_004146375.1 KEGG: sml:Smlt1796 succinate dehydrogenase cytochrome b-556 subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit YP_004146376.1 KEGG: xal:XALc_1825 succinate dehydrogenase membrane anchor subunit protein; TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit YP_004146377.1 KEGG: xal:XALc_1824 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_004146378.1 KEGG: smt:Smal_1538 succinate dehydrogenase iron-sulfur subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_004146379.1 KEGG: sml:Smlt2417 insertion element hypothetical protein; manually curated; PFAM: Integrase catalytic region YP_004146380.1 KEGG: mpt:Mpe_A1738 two-component response regulator; PFAM: response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver YP_004146381.1 KEGG: vap:Vapar_4051 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_004146382.1 PFAM: Surfeit locus 1 family protein; KEGG: aav:Aave_2219 surfeit locus 1 family protein YP_004146383.1 KEGG: har:HEAR2699 cytochrome o ubiquinol oxidase subunit IV; TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV YP_004146384.1 KEGG: vap:Vapar_4048 cytochrome o ubiquinol oxidase subunit III; TIGRFAM: cytochrome o ubiquinol oxidase subunit III; PFAM: cytochrome C oxidase subunit III YP_004146385.1 KEGG: mpt:Mpe_A1743 cytochrome-c oxidase; TIGRFAM: cytochrome o ubiquinol oxidase subunit I; PFAM: cytochrome C oxidase subunit I YP_004146386.1 KEGG: vap:Vapar_4046 ubiquinol oxidase subunit II; TIGRFAM: ubiquinol oxidase subunit II; PFAM: COX aromatic rich domain protein; cytochrome C oxidase subunit II YP_004146387.1 PFAM: major facilitator superfamily MFS_1; KEGG: mpt:Mpe_A1745 membrane transporter YP_004146388.1 PFAM: protein of unknown function DUF339; KEGG: xac:XAC2079 hypothetical protein YP_004146389.1 KEGG: xal:XALc_1821 hypothetical membrane protein YP_004146390.1 KEGG: xca:xccb100_2053 ABC transporter-type lipoprotein-releasing protein; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214 YP_004146391.1 TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter; KEGG: sml:Smlt1803 ABC transporter ATP-binding subunit; SMART: ATPase AAA YP_004146392.1 TIGRFAM: conserved hypothetical protein; KEGG: nfa:nfa46440 hypothetical protein YP_004146393.1 KEGG: xal:XALc_1818 competence-related dna-transformation transporter protein; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein YP_004146394.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: xoo:XOO2299 biopolymer transporter YP_004146395.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: xal:XALc_1816 probable biopolymer transport ExbD protein YP_004146396.1 TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter; ABC transporter transmembrane region; KEGG: smt:Smal_1398 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; SMART: ATPase AAA YP_004146397.1 TIGRFAM: tetraacyldisaccharide 4'-kinase; KEGG: sml:Smlt1641 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase YP_004146398.1 TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: xcb:XC_1997 oligomer interface; other site; PFAM: acylneuraminate cytidylyltransferase YP_004146399.1 KEGG: sml:Smlt1643 low molecular weight phosphotyrosine protein phosphatase; PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight YP_004146400.1 PFAM: NHL repeat containing protein; KEGG: xca:xccb100_2064 hypothetical protein YP_004146401.1 TIGRFAM: excinuclease ABC subunit C; PFAM: excinuclease ABC subunit C; excinuclease ABC subunit C; UvrB/UvrC protein; KEGG: xal:XALc_1810 excinuclease abc subunit C protein; SMART: excinuclease ABC subunit C; Helix-hairpin-helix DNA-binding class 1 YP_004146402.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: smt:Smal_1404 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_004146403.1 manually curated; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sml:Smlt2568 LacI-family transcriptional regulator; SMART: regulatory protein LacI YP_004146404.1 KEGG: xcb:XC_2091 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; region: UDPG_MGDP_dh_C; pfam03720; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_004146405.1 KEGG: smt:Smal_1432 glutamate synthase (NADPH); PFAM: ferredoxin-dependent glutamate synthase YP_004146406.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE3 domain protein; KEGG: xal:XALc_0829 two-component system sensor protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_004146407.1 KEGG: xop:PXO_04305 two-component system regulatory protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_004146408.1 KEGG: xal:XALc_0831 two-component system sensor-response regulator hybrid protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver YP_004146409.1 PFAM: alpha-2-macroglobulin; alpha-2-macroglobulin 2; KEGG: smt:Smal_3023 alpha-2-macroglobulin YP_004146410.1 KEGG: xop:PXO_01731 hypothetical protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein YP_004146411.1 PFAM: purine or other phosphorylase family 1; KEGG: xal:XALc_2532 purine-nucleoside phosphorylase protein YP_004146412.1 PFAM: phosphoribosyltransferase; KEGG: xac:XAC1335 hypoxanthine-guanine phosphoribosyltransferase YP_004146413.1 PFAM: glycoside hydrolase; KEGG: sml:Smlt3538 beta-hexosaminidase YP_004146414.1 PFAM: adenylate cyclase; KEGG: xal:XALc_2536 hypothetical protein YP_004146415.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; KEGG: xcb:XC_1824 EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). the EAL domain has been shown to stimulate degradation of a second...; region: EAL; cd01948; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein YP_004146416.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: sml:Smlt3528 acyl-CoA dehydrogenase YP_004146417.1 TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter; ABC transporter transmembrane region; KEGG: sml:Smlt2001 ABC transporter ATP-binding protein; SMART: ATPase AAA YP_004146418.1 PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; KEGG: smt:Smal_1608 protein of unknown function UPF0029 YP_004146419.1 KEGG: sml:Smlt2003 proline/alanine-rich repetetive membrane anchored protein YP_004146420.1 KEGG: smt:Smal_1610 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein YP_004146421.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; KEGG: smt:Smal_1611 diguanylate cyclase/phosphodiesterase with GAF sensor; SMART: EAL domain protein; GGDEF domain containing protein; GAF domain protein YP_004146422.1 PFAM: aldehyde dehydrogenase; KEGG: bxe:Bxe_A3297 dehydrogenase YP_004146423.1 KEGG: smt:Smal_1524 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein YP_004146424.1 KEGG: smt:Smal_1525 phosphoesterase PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related YP_004146425.1 PFAM: lipolytic protein G-D-S-L family; KEGG: aca:ACP_3097 lipase/acylhydrolase domain protein YP_004146426.1 KEGG: bge:BC1002_4441 hypothetical protein YP_004146427.1 PFAM: OmpA/MotB domain protein; KEGG: xop:PXO_04090 hypothetical protein YP_004146428.1 PFAM: protein of unknown function DUF802; KEGG: bxe:Bxe_B0803 transmembrane protein YP_004146429.1 KEGG: bte:BTH_II1150 hypothetical protein YP_004146430.1 SMART: 3'-5' exonuclease; TIGRFAM: ribonuclease D; KEGG: xal:XALc_2081 probable ribonuclease D protein; PFAM: 3'-5' exonuclease; HRDC domain protein YP_004146431.1 PFAM: protein of unknown function DUF323; KEGG: xca:xccb100_1873 hypothetical protein YP_004146432.1 PFAM: peptidase M48 Ste24p; KEGG: sml:Smlt3336 exported peptidase YP_004146433.1 KEGG: xca:xccb100_1883 hypothetical protein; TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHA accumulation regulator DNA-binding protein; PHB accumulation regulatory domain protein YP_004146434.1 KEGG: xop:PXO_00406 acetoacetyl-CoA reductase; TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR YP_004146435.1 PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; KEGG: xal:XALc_1099 glutamyl-q tRNA (asp) synthetase (glu-q-rss) protein YP_004146436.1 PFAM: peptidase M48 Ste24p; KEGG: xac:XAC2399 heat shock protein HtpX YP_004146437.1 PFAM: protein of unknown function DUF2091, periplasmic; KEGG: xom:XOO_0626 hypothetical protein YP_004146438.1 KEGG: cyc:PCC7424_4470 intracellular protease PfpI family; TIGRFAM: intracellular protease PfpI family; PFAM: ThiJ/PfpI domain-containing protein YP_004146439.1 KEGG: xca:xccb100_2893 hypothetical protein; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A YP_004146440.1 KEGG: smt:Smal_2667 TGF-beta receptor type I/II extracellular region; manually curated; PFAM: TGF-beta receptor type I/II extracellular region YP_004146441.1 PFAM: rhomboid family protein; KEGG: smt:Smal_2666 rhomboid family protein YP_004146442.1 KEGG: kfl:Kfla_2608 histone protein YP_004146443.1 KEGG: xca:xccb100_2890 hypothetical protein YP_004146444.1 KEGG: xop:PXO_00670 hypothetical protein YP_004146445.1 KEGG: smt:Smal_2663 hypothetical protein YP_004146446.1 KEGG: smt:Smal_2662 cyclopropane fatty acyl phospholipid synthase; PFAM: cyclopropane-fatty-acyl-phospholipid synthase YP_004146447.1 KEGG: xac:XAC1456 peptidyl-dipeptidase; PFAM: peptidase M3A and M3B thimet/oligopeptidase F YP_004146448.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: sml:Smlt3227 ferredoxin--NADP reductase YP_004146449.1 KEGG: pau:PA14_50010 dehydrogenase YP_004146450.1 KEGG: xca:xccb100_2883 ABC superfamily peptide exporter; PFAM: ABC transporter; SMART: ATPase AAA YP_004146451.1 PFAM: cytochrome C class I; KEGG: xop:PXO_00327 cytochrome c552 YP_004146452.1 PFAM: cytochrome C class I; KEGG: xca:xccb100_2033 cytochrome C4 YP_004146453.1 KEGG: smt:Smal_1636 efflux transporter RND family, MFP subunit; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: hemolysin D family protein YP_004146454.1 PFAM: acriflavin resistance protein; KEGG: smt:Smal_1637 acriflavin resistance protein YP_004146455.1 PFAM: acriflavin resistance protein; KEGG: xcb:XC_1972 MmpL family; region: MmpL; cl12044 YP_004146456.1 KEGG: xal:XALc_1608 TraB family membrane protein; TIGRFAM: TraB family protein; PFAM: TraB determinant protein YP_004146457.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: smt:Smal_1641 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004146458.1 KEGG: smt:Smal_1642 agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase YP_004146459.1 KEGG: xca:xccb100_1983 hypothetical protein YP_004146460.1 KEGG: xop:PXO_00889 50S ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36 YP_004146461.1 TIGRFAM: cytidylate kinase; KEGG: smt:Smal_1645 cytidylate kinase; PFAM: cytidylate kinase region YP_004146462.1 KEGG: sml:Smlt2043 30S ribosomal protein S1; TIGRFAM: ribosomal protein S1; PFAM: RNA binding S1 domain protein YP_004146463.1 TIGRFAM: integration host factor subunit beta; PFAM: histone family protein DNA-binding protein; KEGG: smt:Smal_1647 integration host factor subunit beta; SMART: histone family protein DNA-binding protein YP_004146464.1 KEGG: xca:xccb100_1988 hypothetical protein YP_004146465.1 KEGG: smt:Smal_1649 tetratricopeptide repeat protein YP_004146466.1 PFAM: glycosyl transferase, family 4, conserved region; KEGG: xcc:XCC2190 lipopolysaccharide core biosynthesis protein YP_004146467.1 PFAM: polysaccharide biosynthesis protein CapD; KEGG: xal:XALc_1597 sugar epimerase protein YP_004146468.1 KEGG: xca:xccb100_1992 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase YP_004146469.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: xcv:XCV2063 acetyl-CoA acetyltransferase; PFAM: thiolase-like YP_004146470.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; enoyl-CoA hydratase/isomerase; KEGG: sml:Smlt2052 3-hydroxyacyl-CoA dehydrogenase oxidoreductase YP_004146471.1 PFAM: regulatory protein TetR; KEGG: xac:XAC2014 TetR family transcriptional regulator YP_004146472.1 PFAM: nucleoside diphosphate kinase; KEGG: smt:Smal_1656 nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase YP_004146473.1 KEGG: sml:Smlt2055 SAM methylase protein; TIGRFAM:radical SAM protein; PFAM: radical SAM domain protein YP_004146474.1 TIGRFAM: type IV pilus biogenesis/stability protein PilW; KEGG: xal:XALc_1590 tpr repeat protein YP_004146475.1 KEGG: xcv:XCV2069 hypothetical protein YP_004146476.1 PFAM: protein of unknown function DUF2133; KEGG: xac:XAC2019 hypothetical protein YP_004146477.1 TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: pyrrolo-quinoline quinone repeat-containing protein; KEGG: xcv:XCV2071 quinoprotein; SMART: pyrrolo-quinoline quinone beta-propeller repeat YP_004146478.1 TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: xal:XALc_1586 probable gtp-binding protein EngA; SMART: ATPase AAA YP_004146479.1 KEGG: xal:XALc_1585 probable molybdopterin-guanine dinucleotide biosynthesis protein A YP_004146480.1 KEGG: xal:XALc_1584 probable molybdopterin biosynthesis protein MoeA; TIGRFAM: molybdenum cofactor synthesis protein; PFAM: MoeA domain protein domain I and II; molybdopterin binding domain; MoeA domain protein domain IV YP_004146481.1 KEGG: xca:xccb100_2289 molybdopterin biosynthesis protein MoeB; PFAM: UBA/THIF-type NAD/FAD binding protein; rhodanese; MoeZ/MoeB domain protein; SMART: rhodanese YP_004146482.1 KEGG: smt:Smal_1668 potassium efflux system protein; TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein YP_004146483.1 PFAM: protein of unknown function DUF1244; KEGG: xca:xccb100_1994 hypothetical protein YP_004146484.1 KEGG: xal:XALc_1581 probable bifunctional methylenetetrahydrofolatedehydrogenase/methenyltetrahydrof o late cyclohydrolase protein; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_004146485.1 manually curated; TIGRFAM: cytochrome C oxidase subunit II; KEGG: eba:ebA158 chain II protein of cytochrome C oxidase; PFAM: cytochrome C oxidase subunit II YP_004146486.1 KEGG: azo:azo1757 quinol oxidase subunit I; TIGRFAM: cytochrome C oxidase subunit I; PFAM: cytochrome C oxidase subunit I YP_004146487.1 KEGG: eba:ebD10 membrane protein, accessory subunit of cytochrome C oxidase YP_004146488.1 KEGG: eba:ebA159 hypothetical protein YP_004146489.1 PFAM: Uncharacterised protein family UPF0093; KEGG: mei:Msip34_2264 hypothetical protein YP_004146490.1 PFAM: cytochrome C oxidase caa3-type, assembly factor CtaG-related; KEGG: vap:Vapar_0701 hypothetical protein YP_004146491.1 SMART: CBS domain containing protein; TIGRFAM: inosine-5'-monophosphate dehydrogenase; KEGG: xac:XAC2288 inosine 5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein YP_004146492.1 KEGG: smt:Smal_1672 GMP synthase; TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I YP_004146493.1 KEGG: dia:Dtpsy_0004 hypothetical protein YP_004146494.1 KEGG: vap:Vapar_1358 hypothetical protein YP_004146495.1 KEGG: sml:Smlt2531 hypothetical protein YP_004146496.1 KEGG: xcv:XCV2612 ATP-dependent DNA ligase; TIGRFAM: DNA ligase D; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, ligase domain protein; DNA polymerase LigD, polymerase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; DNA primase small subunit YP_004146497.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: xcv:XCV1333 two-component system sensor protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_004146498.1 KEGG: xca:xccb100_3152 two-component system response regulator; PFAM: response regulator receiver; SMART: response regulator receiver YP_004146499.1 KEGG: aha:AHA_4207 acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_004146500.1 KEGG: csa:Csal_1297 peptidylprolyl isomerase, FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type YP_004146501.1 KEGG: sml:Smlt4363 puative transmembrane protein YP_004146502.1 KEGG: xal:XALc_2510 hypothetical protein YP_004146503.1 PFAM: protein of unknown function UPF0153; KEGG: smt:Smal_2938 protein of unknown function UPF0153 YP_004146504.1 PFAM: peptidase M14 carboxypeptidase A; KEGG: sml:Smlt2857 hypothetical protein YP_004146505.1 PFAM: metal-dependent hydrolase HDOD; KEGG: xca:xccb100_0081 hypothetical protein YP_004146506.1 KEGG: sml:Smlt1175 TonB dependent receptor protein; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor YP_004146507.1 PFAM: NAD-dependent epimerase/dehydratase; Twin-arginine translocation pathway, signal sequence, subgroup; KEGG: mxa:MXAN_5389 hypothetical protein YP_004146508.1 PFAM: protein of unknown function DUF1328; KEGG: xac:XAC1353 hypothetical protein YP_004146509.1 PFAM: lipocalin; KEGG: xac:XAC2561 outer membrane lipoprotein Blc YP_004146510.1 KEGG: smt:Smal_2936 alkylphosphonate utilization operon protein PhnA; TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein YP_004146511.1 PFAM: aldo/keto reductase; KEGG: hse:Hsero_2707 aryl-alcohol dehydrogenase YP_004146512.1 PFAM: ThiJ/PfpI domain-containing protein; KEGG: bpd:BURPS668_A1062 DJ-1/PfpI family protein YP_004146513.1 KEGG: mch:Mchl_4755 hypothetical protein YP_004146514.1 PFAM: CMP/dCMP deaminase zinc-binding; GCN5-related N-acetyltransferase; KEGG: xal:XALc_1648 cytidine / deoxycytidylate deaminase protein YP_004146515.1 KEGG: gme:Gmet_0709 hypothetical protein YP_004146516.1 KEGG: smt:Smal_2426 oligoribonuclease; PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease YP_004146517.1 TIGRFAM: phosphoenolpyruvate synthase; KEGG: smt:Smal_2422 phosphoenolpyruvate synthase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PEP-utilizing protein YP_004146518.1 PFAM: protein of unknown function DUF299; KEGG: xal:XALc_1644 hypothetical upf0085 protein YP_004146519.1 PFAM: protein of unknown function DUF1249; KEGG: xom:XOO_2081 hypothetical protein YP_004146520.1 KEGG: smt:Smal_1438 luciferase-like monooxygenase; TIGRFAM: luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup YP_004146521.1 KEGG: smt:Smal_1625 cold-shock DNA-binding domain protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein YP_004146522.1 PFAM: glutathione S-transferase domain; KEGG: xcb:XC_1829 substrate binding pocket (H-site); other site YP_004146523.1 PFAM: protein of unknown function UPF0061; KEGG: xcb:XC_1831 uncharacterized ACR, YdiU/UPF0061 family; region: UPF0061; cl00428 YP_004146524.1 KEGG: smt:Smal_1628 adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_004146525.1 KEGG: xcv:XCV2587 ATP-dependent RNA helicase DbpA; PFAM: DEAD/DEAH box helicase; helicase; DbpA RNA-binding domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_004146526.1 KEGG: xal:XALc_1112 abc transporter atp-binding abc transporter atp-binding protein; PFAM: ABC transporter; SMART: AAA ATPase YP_004146527.1 PFAM: polyketide cyclase/dehydrase; KEGG: cak:Caul_4877 activator of HSP90 ATPase 1 family protein YP_004146528.1 KEGG: sml:Smlt3240 hypothetical protein YP_004146529.1 PFAM: guanine-specific ribonuclease N1 and T1; KEGG: sml:Smlt3239 ribonuclease YP_004146530.1 PFAM: Manganese/iron superoxide dismutase-like; KEGG: sml:Smlt3238 superoxide dismutase [Mn] YP_004146531.1 KEGG: smt:Smal_2608 transporter hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein YP_004146532.1 KEGG: sml:Smlt3170 RND family acriflavine resistance protein A precursor; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: hemolysin D YP_004146533.1 PFAM: regulatory protein TetR; KEGG: smt:Smal_2606 TetR family transcriptional regulator YP_004146534.1 PFAM: NAD-glutamate dehydrogenase; KEGG: smt:Smal_2605 NAD-glutamate dehydrogenase YP_004146535.1 KEGG: xal:XALc_1760 probable inorganic polyphosphate/atp-nad kinase (poly(p)/ATP nad kinase) protein; PFAM: ATP-NAD/AcoX kinase YP_004146536.1 KEGG: pat:Patl_2746 hypothetical protein YP_004146537.1 KEGG: sml:Smlt3165 5-nucleotidase; PFAM: 5-nucleotidase YP_004146538.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: xca:xccb100_2154 chemotaxis-specific methylesterase; SMART: response regulator receiver YP_004146539.1 PFAM: CheD family protein; KEGG: xca:xccb100_2155 chemoreceptor glutamine deamidase CheD YP_004146540.1 PFAM: MCP methyltransferase CheR-type; KEGG: smt:Smal_1845 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase CheR-type YP_004146541.1 KEGG: smt:Smal_1847 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; PAS fold-4 domain protein; SMART: chemotaxis sensory transducer YP_004146542.1 KEGG: sna:Snas_6033 hypothetical protein YP_004146543.1 KEGG: sml:Smlt2251 transmembrane methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_004146544.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; PAS fold domain protein; KEGG: smt:Smal_1847 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_004146545.1 KEGG: xca:xccb100_2158 hypothetical protein YP_004146546.1 KEGG: smt:Smal_1849 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein YP_004146547.1 PFAM: type IV pilus assembly PilZ; KEGG: smt:Smal_1850 YcgR family protein YP_004146548.1 KEGG: xcv:XCV1956 chemotaxis protein CheA; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein YP_004146549.1 KEGG: smt:Smal_1853 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_004146550.1 KEGG: xac:XAC1905 hypothetical protein YP_004146551.1 KEGG: sml:Smlt2263 protein with a CheW-like domain; PFAM: CheW domain protein; SMART: CheW domain protein YP_004146552.1 KEGG: smt:Smal_1856 cobyrinic acid ac-diamide synthase YP_004146553.1 PFAM: OmpA/MotB domain protein; KEGG: smt:Smal_1857 flagellar motor protein MotD YP_004146554.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: xca:xccb100_2179 flagellar motor protein YP_004146555.1 KEGG: smt:Smal_1859 CheA signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; CheW domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein YP_004146556.1 KEGG: smt:Smal_1860 chemotaxis phosphatase, CheZ YP_004146557.1 KEGG: xop:PXO_06210 chemotaxis response regulator CheY; PFAM: response regulator receiver; SMART: response regulator receiver YP_004146558.1 KEGG: xal:XALc_1379 probable rna polymerase sigma factor for flagellar operon (sigma-f factor) protein; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein YP_004146559.1 KEGG: xca:xccb100_2202 flagellar synthesis regulator FleN YP_004146560.1 TIGRFAM: flagellar biosynthetic protein FlhF; PFAM: GTP-binding signal recognition particle SRP54 G- domain; KEGG: xcv:XCV1979 flagellar biosynthesis regulator FlhF; SMART: ATPase AAA YP_004146561.1 KEGG: xal:XALc_1382 probable flagellar biosynthesis pathway component , FlhA protein; TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein YP_004146562.1 KEGG: sml:Smlt2274 flagellar biosynthesis protein FlhB; TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter YP_004146563.1 KEGG: xca:xccb100_2210 hypothetical protein; TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein YP_004146564.1 PFAM: export protein FliQ family 3; KEGG: xal:XALc_1385 probable flagellar biosynthetic protein FliQ YP_004146565.1 KEGG: xal:XALc_1386 probable flagellar biosynthetic protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein YP_004146566.1 TIGRFAM: flagellar biosynthetic protein FliO; KEGG: xca:xccb100_2214 flagellar biogenesis protein FliO YP_004146567.1 KEGG: xal:XALc_1388 probable flagellar motor switch/type III secretory pathway protein FliN; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein YP_004146568.1 KEGG: sml:Smlt2282 flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein YP_004146569.1 PFAM: flagellar basal body-associated protein FliL; KEGG: smt:Smal_1874 flagellar basal body-associated protein FliL YP_004146570.1 PFAM: flagellar hook-length control protein-like, C-terminal domain; KEGG: xom:XOO_2465 flagellar protein YP_004146571.1 KEGG: xal:XALc_1392 probable flagellar biosynthesis chaperone FliJ protein; TIGRFAM: flagellar export protein FliJ; PFAM: flagellar export FliJ family protein YP_004146572.1 TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; KEGG: xca:xccb100_2220 flagellum-specific ATP synthase; SMART: ATPase AAA YP_004146573.1 PFAM: flagellar assembly protein FliH/type III secretion system HrpE; KEGG: xac:XAC1952 flagellar protein YP_004146574.1 KEGG: xac:XAC1953 flagellar protein; TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG YP_004146575.1 KEGG: smt:Smal_1880 flagellar MS-ring protein; TIGRFAM: flagellar M-ring protein FliF; PFAM: flagellar M-ring domain protein; secretory protein YscJ/FliF family protein YP_004146576.1 KEGG: xal:XALc_1397 probable flagellar hook-basal body complex protein FliE; TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE YP_004146577.1 KEGG: xac:XAC1967 transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; flagellar regulatory FleQ domain protein; helix-turn-helix Fis-type; SMART: ATPase AAA YP_004146578.1 KEGG: xop:PXO_06172 response regulator; PFAM: response regulator receiver; SMART: response regulator receiver YP_004146579.1 KEGG: smt:Smal_1885 RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor YP_004146580.1 KEGG: xal:XALc_1412 probable two-component system regulatory protein, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_004146581.1 KEGG: xom:XOO_2443 hypothetical protein YP_004146582.1 KEGG: mrd:Mrad2831_6095 catalase YP_004146583.1 KEGG: xca:xccb100_2235 hypothetical protein YP_004146584.1 KEGG: xca:xccb100_2236 hypothetical protein; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS YP_004146585.1 PFAM: flagellar hook-associated 2 domain-containing protein; flagellar hook-associated protein 2 domain-containing protein; flagellin hook IN repeat protein; KEGG: xac:XAC1974 flagellar protein YP_004146586.1 PFAM: glycosyl transferase family 2; KEGG: xcb:XC_2258 glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. the acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; region: glycosyltransferase_GTB_type; cl10013 YP_004146587.1 KEGG: rcp:RCAP_rcc01880 hypothetical protein YP_004146588.1 PFAM: flagellin domain protein; KEGG: neu:NE1593 flagellin YP_004146589.1 KEGG: xop:PXO_06164 flagellar hook-associated protein FlgL; TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein YP_004146590.1 KEGG: xac:XAC1977 flagellar hook-associated protein FlgK; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein YP_004146591.1 TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; flagellar protein FlgJ-like; KEGG: smt:Smal_1898 flagellar rod assembly protein/muramidase FlgJ; SMART: Lysozyme subfamily 2 YP_004146592.1 PFAM: flagellar P-ring protein; KEGG: xac:XAC1979 flagellar basal body P-ring protein YP_004146593.1 PFAM: flagellar L-ring protein; KEGG: smt:Smal_1900 flagellar basal body L-ring protein YP_004146594.1 KEGG: xac:XAC1981 flagellar basal body rod protein FlgG; TIGRFAM: flagellar basal-body rod protein FlgG; fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein YP_004146595.1 KEGG: xca:xccb100_2246 flagellar basal body rod protein FlgF; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body protein; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein YP_004146596.1 KEGG: xca:xccb100_2247 flagellar hook protein FlgE; TIGRFAM: fagellar hook-basal body protein; PFAM: flagellar basal body FlaE domain protein; flagellar basal body rod protein; protein of unknown function DUF1078 domain protein YP_004146597.1 PFAM: flagellar hook capping protein; KEGG: xac:XAC1984 flagellar basal body rod modification protein YP_004146598.1 KEGG: xop:PXO_06154 flagellar basal body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein YP_004146599.1 KEGG: sml:Smlt2317 flagellar basal body rod protein FlgB; TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein YP_004146600.1 KEGG: sml:Smlt2318 two-component response regulator chemotaxis signal transduction protein; PFAM: CheW domain protein; response regulator receiver; SMART: CheW domain protein; response regulator receiver YP_004146601.1 KEGG: smt:Smal_1908 flagellar basal body P-ring biosynthesis protein FlgA; TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein YP_004146602.1 KEGG: smt:Smal_1909 anti-sigma-28 factor, FlgM; TIGRFAM: anti-sigma-28 factor FlgM family protein; PFAM: anti-sigma-28 factor FlgM family protein YP_004146603.1 PFAM: FlgN family protein; KEGG: xca:xccb100_2254 hypothetical protein YP_004146604.1 KEGG: xcv:XCV2038 two-component system sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_004146605.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; KEGG: xal:XALc_1434 two-component system sensor-response regulator hybrid protein; SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver YP_004146606.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold domain protein; KEGG: xal:XALc_1435 sensory box histidine kinase protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein YP_004146607.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-3 domain protein; hypothetical protein; KEGG: xal:XALc_1436 hypothetical protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein YP_004146608.1 KEGG: sml:Smlt2330 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_004146609.1 PFAM: protein of unknown function DUF489; KEGG: xop:PXO_06141 hypothetical protein YP_004146610.1 TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: xop:PXO_06140 tRNA-specific 2-thiouridylase MnmA YP_004146611.1 PFAM: NUDIX hydrolase; KEGG: xac:XAC1999 7,8-dihydro-8-oxoguanine-triphosphatase YP_004146612.1 KEGG: sml:Smlt2334 hypothetical protein YP_004146613.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: xcv:XCV2048 ATP-dependent Clp protease adaptor protein ClpS YP_004146614.1 TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; PFAM: ATPase AAA; Clp domain protein; ATPase AAA central domain protein; Clp ATPase-like; KEGG: smt:Smal_1924 ATP-dependent Clp protease ATP-binding subunit ClpA; SMART: ATPase AAA YP_004146615.1 KEGG: sml:Smlt2338 hypothetical protein YP_004146616.1 KEGG: smt:Smal_1927 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein YP_004146617.1 TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; KEGG: xac:XAC2003 leucyl/phenylalanyl-tRNA--protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase YP_004146618.1 PFAM: protein of unknown function DUF482; KEGG: xal:XALc_1448 hypothetical protein YP_004146619.1 TIGRFAM: thioredoxin reductase; KEGG: xca:xccb100_2270 thioredoxin-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004146620.1 KEGG: xca:xccb100_2271 cell division protein FtsK; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: ATPase AAA YP_004146621.1 KEGG: xal:XALc_1452 probable outer-membrane lipoprotein carrier protein precursor; TIGRFAM: outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA YP_004146622.1 KEGG: xal:XALc_1454 atpase protein; PFAM: AAA ATPase central domain protein; SMART: ATPase AAA YP_004146623.1 KEGG: xom:XOO_2137 hypothetical protein YP_004146624.1 KEGG: ttu:TERTU_4345 glycoside hydrolase family 9 YP_004146625.1 PFAM: Integrase catalytic region; KEGG: ajs:Ajs_2648 integrase catalytic subunit YP_004146626.1 KEGG: xal:XALc_1788 hypothetical_protein YP_004146627.1 KEGG: lma:LmjF14.1100 kinesin K39 YP_004146628.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xcb:XC_0324 short chain dehydrogenase; Validated; region: PRK08264; PRK08264 YP_004146629.1 KEGG: bxe:Bxe_C1385 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_004146630.1 KEGG: sml:Smlt0181 hypothetical protein YP_004146631.1 KEGG: smt:Smal_0142 hypothetical protein YP_004146632.1 KEGG: xal:XALc_1689 hypothetical upf0176 protein; PFAM: rhodanese; SMART: rhodanese YP_004146633.1 KEGG: xop:PXO_01513 hypothetical protein YP_004146634.1 KEGG: xop:PXO_01512 fkbp-type peptidyl-prolyl cis-trans isomerase; PFAM: peptidylprolyl isomerase FKBP-type YP_004146635.1 PFAM: HI0933 family protein; KEGG: xcb:XC_2092 Rossmann-fold NAD(P)(+)-binding proteins; region: NADB_Rossmann; cl09931 YP_004146636.1 PFAM: phosphoesterase HXTX; KEGG: tin:Tint_0290 2'-5' RNA ligase YP_004146637.1 PFAM: endoribonuclease L-PSP; KEGG: xca:xccb100_2972 endoribonuclease L-PSP YP_004146638.1 KEGG: smt:Smal_2935 tetratricopeptide TPR_2 repeat protein; PFAM: transglutaminase; Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat YP_004146639.1 PFAM: transglutaminase; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: smt:Smal_2935 tetratricopeptide TPR_2 repeat protein YP_004146640.1 KEGG: har:HEAR0582 RNA-binding protein YP_004146641.1 PFAM: MscS Mechanosensitive ion channel; KEGG: gau:GAU_2957 hypothetical membrane protein YP_004146642.1 KEGG: psa:PST_3731 hypothetical protein YP_004146643.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: transcription regulator MerR DNA binding; regulatory protein MerR; KEGG: mpt:Mpe_A3534 MerR family transcriptional regulator; SMART: regulatory protein MerR YP_004146644.1 KEGG: tbd:Tbd_2266 heavy metal translocating P-type ATPase; TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase YP_004146645.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: sjp:SJA_C1-08360 homolog of microcin C7 resistance protein MccF YP_004146646.1 KEGG: psa:PST_2519 membrane fusion protein; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: hemolysin D family protein YP_004146647.1 PFAM: protein of unknown function DUF214; KEGG: psa:PST_2520 lipoprotein release ABC transporter permease YP_004146648.1 KEGG: psa:PST_2521 lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA YP_004146649.1 KEGG: sml:Smlt0451 dehydrogenase YP_004146650.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rop:ROP_49750 3-ketoacyl-(acyl-carrier-protein) reductase YP_004146651.1 KEGG: ctt:CtCNB1_3769 3-demethylubiquinone-9 3-methyltransferase YP_004146652.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Two component regulator three Y domain-containing protein; Two component regulator propeller; KEGG: sml:Smlt1542 two-component system sensor kinase/response regulator fusion protein with GGDEF signalling domain; SMART: GGDEF domain containing protein YP_004146653.1 KEGG: mpt:Mpe_A0440 hypothetical protein YP_004146654.1 PFAM: protein of unknown function DUF188; KEGG: sml:Smlt2020 hypothetical protein YP_004146655.1 KEGG: cse:Cseg_2004 glycoside hydrolase family 3 domain-containing protein; PFAM: glycoside hydrolase family 3 domain protein; SMART: PA14 domain protein YP_004146656.1 KEGG: cse:Cseg_2002 hypothetical protein YP_004146657.1 KEGG: xca:xccb100_4393 hypothetical protein YP_004146658.1 KEGG: mxa:MXAN_6132 hypothetical protein YP_004146659.1 KEGG: cse:Cseg_0725 hypothetical protein YP_004146660.1 KEGG: bja:bll0419 hypothetical protein YP_004146661.1 PFAM: glycoside hydrolase family 5; KEGG: cak:Caul_1283 glycoside hydrolase family protein YP_004146662.1 PFAM: NIPSNAP family containing protein; KEGG: pzu:PHZ_c1312 hypothetical protein YP_004146663.1 KEGG: psa:PST_4123 DNA replication initiation ATPase YP_004146664.1 KEGG: pzu:PHZ_c2781 hypothetical protein YP_004146665.1 PFAM: Domain of unknown function DUF1989; KEGG: mex:Mext_2465 hypothetical protein YP_004146666.1 PFAM: protein of unknown function YqcI/YcgG; KEGG: met:M446_2566 hypothetical protein YP_004146667.1 KEGG: ote:Oter_0344 hypothetical protein YP_004146668.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rso:RSc1202 flavoprotein NADH-dependent oxidoreductase YP_004146669.1 KEGG: gbe:GbCGDNIH1_1131 hypothetical protein YP_004146670.1 KEGG: pna:Pnap_0002 hypothetical protein YP_004146671.1 PFAM: amidohydrolase; KEGG: aba:acid345_3491 Pro-Hyp dipeptidase YP_004146672.1 KEGG: pfo:Pfl01_2404 hemerythrin HHE cation binding region YP_004146673.1 KEGG: met:M446_1199 hypothetical protein YP_004146674.1 KEGG: rso:RS02050 signal peptide protein YP_004146675.1 KEGG: reh:H16_B1554 multimeric flavodoxin WrbA YP_004146676.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: psa:PST_1197 hypothetical protein YP_004146677.1 KEGG: eli:ELI_12380 alkaline phosphatase YP_004146678.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_0532 TonB-dependent receptor YP_004146679.1 KEGG: phe:Phep_2377 hypothetical protein YP_004146680.1 KEGG: msl:Msil_2514 hypothetical protein YP_004146681.1 KEGG: xcb:XC_3913 hypothetical protein YP_004146682.1 KEGG: rsp:RSP_3758 cytosine-specific DNA methylase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase YP_004146683.1 manually curated; TIGRFAM: DNA mismatch endonuclease Vsr; KEGG: xoo:XOO0606 XorII very-short-patch-repair endonuclease; PFAM: DNA mismatch endonuclease vsr YP_004146684.1 KEGG: xoo:XOO0608 endonuclease YP_004146685.1 PFAM: YhhN family protein; KEGG: smt:Smal_1129 YhhN family protein YP_004146686.1 KEGG: tcu:Tcur_4455 protein of unknown function DUF214 YP_004146687.1 KEGG: hch:HCH_10020 hypothetical protein YP_004146688.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nwi:Nwi_2886 glyoxalase/bleomycin resistance protein/dioxygenase YP_004146689.1 KEGG: oan:Oant_3517 GCN5-related N-acetyltransferase YP_004146690.1 KEGG: rpi:Rpic_3584 hypothetical protein YP_004146691.1 KEGG: pag:PLES_44951 hypothetical protein YP_004146692.1 PFAM: pseudouridine synthase; KEGG: xac:XAC4320 pseudouridylate synthase YP_004146693.1 KEGG: xcv:XCV0064 hypothetical protein YP_004146694.1 PFAM: glycoside hydrolase family 11; KEGG: scl:sce9318 no hits YP_004146695.1 KEGG: dma:DMR_23210 5-formyltetrahydrofolate cyclo-ligase family protein YP_004146696.1 KEGG: sus:acid_2094 alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; SMART: alpha-L-arabinofuranosidase domain protein YP_004146697.1 KEGG: smt:Smal_3871 protein of unknown function DUF1568 YP_004146698.1 KEGG: dhd:Dhaf_0644 hypothetical protein YP_004146699.1 PFAM: protein of unknown function DUF262; KEGG: dhd:Dhaf_0643 protein of unknown function DUF262 YP_004146700.1 KEGG: dhd:Dhaf_0642 hypothetical protein; manually curated; PFAM: DNA methylase N-4/N-6 domain protein YP_004146701.1 manually curated; KEGG: nha:Nham_3665 3-demethylubiquinone-9 3-methyltransferase YP_004146702.1 KEGG: cwo:Cwoe_2289 methylmalonyl-CoA mutase; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; ArgK protein YP_004146703.1 KEGG: xcb:XC_3955 hypothetical protein YP_004146704.1 KEGG: psp:PSPPH_3478 hypothetical protein YP_004146705.1 PFAM: regulatory protein TetR; KEGG: mpt:Mpe_A0420 TetR family regulatory protein YP_004146706.1 PFAM: Glu/Leu/Phe/Val dehydrogenase dimerisation region; Glu/Leu/Phe/Val dehydrogenase; KEGG: xal:XALc_2523 probable glu/leu/phe/val dehydrogenase protein YP_004146707.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: oan:Oant_0037 acyl-CoA dehydrogenase domain-containing protein YP_004146708.1 PFAM: transposase IS4 family protein; KEGG: bpl:BURPS1106A_3889 transposase, IS4 YP_004146709.1 KEGG: xal:XALc_2524 probable autotransporter serine protease protein; TIGRFAM: autotransporter-associated beta strand repeat protein; outer membrane autotransporter barrel domain protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Autotransporter beta- domain protein YP_004146710.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: sml:Smlt3525 thiolase; PFAM: thiolase-like YP_004146711.1 KEGG: xac:XAC1347 outer membrane protein YP_004146712.1 KEGG: smt:Smal_2957 hypothetical protein YP_004146713.1 KEGG: rce:RC1_0390 methylcrotonoyl-CoA carboxylase; PFAM: carboxyl transferase YP_004146714.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bpt:Bpet0315 short chain dehydrogenase YP_004146715.1 PFAM: glycoside hydrolase family 8; KEGG: ttu:TERTU_4506 glycoside hydrolase family 8 domain protein YP_004146716.1 KEGG: sml:Smlt2212 hypothetical protein YP_004146717.1 KEGG: xcb:XC_2354 nucleoside recognition; region: Gate; cl00486; TIGRFAM: ferrous iron transporter B; PFAM: Ferrous iron transporter B domain-containing protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain-containing protein YP_004146718.1 PFAM: FeoA family protein; KEGG: xal:XALc_1334 probable ferrous iron transporter YP_004146719.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: smt:Smal_1802 enoyl-CoA hydratase/isomerase YP_004146720.1 PFAM: carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: azl:AZL_a02280 3-methylcrotonyl-CoA carboxylase subunit alpha YP_004146721.1 PFAM: pyruvate carboxyltransferase; KEGG: sml:Smlt2207 hydroxymethylglutaryl-CoA lyase YP_004146722.1 PFAM: MOSC domain containing protein; 3-alpha domain protein; KEGG: xca:xccb100_2127 hypothetical protein YP_004146723.1 PFAM: aminotransferase class I and II; KEGG: xcv:XCV1904 aminotransferase YP_004146724.1 KEGG: xcv:XCV1568 hypothetical protein YP_004146725.1 PFAM: prephenate dehydrogenase; amino acid-binding ACT domain protein; KEGG: sml:Smlt1998 prephenate dehydrogenase YP_004146726.1 KEGG: smt:Smal_1604 pyridoxal kinase; TIGRFAM: pyridoxal kinase; PFAM: phosphomethylpyrimidine kinase type-1 YP_004146727.1 TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ; DnaJ central domain protein; KEGG: xca:xccb100_2798 chaperone protein DnaJ; SMART: heat shock protein DnaJ YP_004146728.1 KEGG: xac:XAC1522 molecular chaperone DnaK; TIGRFAM: chaperone protein DnaK; PFAM: heat shock protein 70 YP_004146729.1 PFAM: GrpE protein; KEGG: smt:Smal_1599 heat shock protein GrpE YP_004146730.1 KEGG: xal:XALc_1679 probable heat-inducible transcriptional repressor protein; TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Winged helix-turn-helix transcription repressor, HrcA-like YP_004146731.1 KEGG: xca:xccb100_2802 recombination protein N; TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein YP_004146732.1 PFAM: ferric-uptake regulator; KEGG: xal:XALc_1681 probable ferric-uptake regulator protein YP_004146733.1 PFAM: SmpA/OmlA domain-containing protein; KEGG: xal:XALc_1682 probable small membrane lipoprotein a (SmpA) YP_004146734.1 PFAM: protein of unknown function UPF0125; KEGG: xom:XOO_1906 hypothetical protein YP_004146735.1 PFAM: cyclase/dehydrase; KEGG: sml:Smlt1983A hypothetical protein YP_004146736.1 KEGG: xca:xccb100_2807 SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein YP_004146737.1 KEGG: xca:xccb100_4069 phage-related protein; TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase superfamily YP_004146738.1 KEGG: nwi:Nwi_2667 hypothetical protein YP_004146739.1 PFAM: MgtC/SapB transporter; KEGG: smt:Smal_2363 MgtC/SapB transporter YP_004146740.1 KEGG: xca:xccb100_2855 outer membrane efflux protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein YP_004146741.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sml:Smlt1832 short-chain dehydrogenase/reductase YP_004146742.1 KEGG: smt:Smal_1568 transporter hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein YP_004146743.1 KEGG: smt:Smal_1567 efflux transporter RND family, MFP subunit; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: hemolysin D family protein YP_004146744.1 KEGG: smt:Smal_1566 short-chain dehydrogenase/reductase SDR YP_004146745.1 KEGG: smt:Smal_1565 hypothetical protein YP_004146746.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: xac:XAC1480 transcriptional regulator YP_004146747.1 PFAM: OmpA/MotB domain protein; KEGG: xca:xccb100_2862 OmpA family outer membrane lipoprotein YP_004146748.1 KEGG: xca:xccb100_2864 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase YP_004146749.1 KEGG: xal:XALc_1733 probable 50s ribosomal subunit protein L9; TIGRFAM: ribosomal protein L9; PFAM: ribosomal protein L9-like YP_004146750.1 KEGG: smt:Smal_2588 30S ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18 YP_004146751.1 KEGG: xcb:XC_2671 ribosomal protein S6; region: ribosomal_S6; cl00414; TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6, bacterial-like YP_004146752.1 KEGG: xal:XALc_1737 iron-sulfur cluster assembly protein (HesB/YadR/YfhF family); TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein YP_004146753.1 KEGG: xal:XALc_1738 probable asparaginyl-tRNA synthetase (AsnRS) protein; TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type YP_004146754.1 KEGG: xal:XALc_1739 hypothetical protein YP_004146755.1 KEGG: sml:Smlt3156 hypothetical protein YP_004146756.1 PFAM: negative transcriptional regulator; KEGG: xca:xccb100_2703 protease synthase YP_004146757.1 KEGG: xal:XALc_1751 probable carbonic anhydrase protein; PFAM: carbonic anhydrase YP_004146758.1 TIGRFAM: 3-hydroxyanthranilate 3,4-dioxygenase; KEGG: xal:XALc_1752 3-hydroxyanthranilate 3,4-dioxygenase protein; PFAM: 3-hydroxyanthranilic acid dioxygenase YP_004146759.1 KEGG: xcv:XCV1642 kynureninase; TIGRFAM: kynureninase; PFAM: aminotransferase class V YP_004146760.1 KEGG: xac:XAC1600 kynurenine 3-monooxygenase; PFAM: FAD dependent oxidoreductase YP_004146761.1 PFAM: exonuclease domain protein; exonuclease RNase T and DNA polymerase III; KEGG: xcb:XC_2683 exonuclease C-terminal; region: Exonuc_X-T_C; pfam08411; SMART: exonuclease YP_004146762.1 PFAM: Conserved hypothetical protein CHP02453; KEGG: sml:Smlt3163 hypothetical protein YP_004146763.1 KEGG: xcv:XCV1638 hypothetical protein YP_004146764.1 KEGG: gsu:GSU2675 hypothetical protein YP_004146765.1 PFAM: regulatory protein TetR; KEGG: rpd:RPD_4359 regulatory protein, TetR YP_004146766.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reh:H16_A0213 hypothetical protein YP_004146767.1 KEGG: sml:Smlt2245 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; TIGRFAM: aconitate hydratase 2; PFAM: Aconitase B; aconitate hydratase domain-containing protein YP_004146768.1 PFAM: PilT protein domain protein; KEGG: sml:Smlt2244 hypothetical protein YP_004146769.1 KEGG: smt:Smal_1837 transcriptional regulator, AbrB family; TIGRFAM: AbrB family transcriptional regulator; PFAM: SpoVT/AbrB domain-containing protein YP_004146770.1 KEGG: sml:Smlt2241 aconitate hydratase; TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain-containing protein YP_004146771.1 KEGG: xac:XAC1881 hypothetical protein YP_004146772.1 PFAM: AMP-dependent synthetase and ligase; KEGG: smt:Smal_1831 long-chain fatty acyl CoA ligase YP_004146773.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: xac:XAC1879 enoyl-CoA hydratase YP_004146774.1 KEGG: xac:XAC1878 RpfC protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein YP_004146775.1 KEGG: smt:Smal_1828 response regulator receiver modulated metal dependent phosphohydrolase; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region YP_004146776.1 KEGG: xcb:XC_2336 motif 3; other site; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type YP_004146777.1 manually curated; KEGG: bpm:BURPS1710b_3602 hypothetical protein YP_004146778.1 KEGG: smt:Smal_2672 hypothetical protein YP_004146779.1 PFAM: HesB/YadR/YfhF-family protein; nitrogen-fixing NifU domain protein; KEGG: xal:XALc_1612 probable protein gnty YP_004146780.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: sml:Smlt3243 pterin-4-alpha-carbinolamine dehydratase YP_004146781.1 TIGRFAM: TonB family protein; KEGG: smt:Smal_2675 TonB family protein YP_004146782.1 PFAM: zinc/iron permease; KEGG: xca:xccb100_2382 zinc transporter ZupT YP_004146783.1 TIGRFAM: pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: xcb:XC_2099 active site; other site; SMART: RNA-binding S4 domain protein YP_004146784.1 KEGG: xcv:XCV2423 ribonuclease E; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/ribonuclease E/G; RNA binding S1 domain protein YP_004146785.1 KEGG: smt:Smal_1526 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_004146786.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: smt:Smal_2532 LysR family transcriptional regulator YP_004146787.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: xac:XAC1654 acyl carrier protein phosphodiesterase YP_004146788.1 TIGRFAM: seryl-tRNA synthetase; KEGG: sml:Smlt3092 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like YP_004146789.1 KEGG: xca:xccb100_2667 TonB-like protein; TIGRFAM: TonB family protein; PFAM: TonB domain YP_004146790.1 KEGG: xca:xccb100_2668 TonB-like protein; TIGRFAM: TonB family protein; PFAM: TonB domain YP_004146791.1 KEGG: smt:Smal_2538 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_004146792.1 KEGG: xca:xccb100_2670 P-protein, probable; TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; chorismate mutase, type II; amino acid-binding ACT domain protein YP_004146793.1 TIGRFAM: phosphoserine aminotransferase; KEGG: xal:XALc_1704 probable phosphoserine aminotransferase (PsaT) protein; PFAM: aminotransferase class V YP_004146794.1 PFAM: oxidoreductase molybdopterin binding; KEGG: xal:XALc_1705 sulfite_oxidase_molybdenum_contaning_subunit protein YP_004146795.1 PFAM: ferric reductase domain protein transmembrane component domain; KEGG: xac:XAC1646 sulfite oxidase subunit YedZ YP_004146796.1 KEGG: xcv:XCV1686 hypothetical protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein YP_004146797.1 TIGRFAM: polyhydroxyalkanoic acid system protein; KEGG: xcb:XC_2649 polyhydroxyalkanoic acid system protein (PHA_gran_rgn); region: PHA_gran_rgn; cl09865 YP_004146798.1 KEGG: xal:XALc_1711 polyhydroxyalcanoate_granule_associated_protein; TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein YP_004146799.1 KEGG: sml:Smlt3103 transmembrane protein YP_004146800.1 SMART: DNA gyrase/topoisomerase IV subunit A; TIGRFAM: DNA gyrase subunit alpha; KEGG: smt:Smal_2578 DNA gyrase subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller YP_004146801.1 KEGG: hau:Haur_1665 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_004146802.1 PFAM: ABC transporter; KEGG: hau:Haur_1664 ABC transporter related YP_004146803.1 KEGG: sus:acid_1274 ABC transporter YP_004146804.1 TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; KEGG: xcv:XCV1671 methylthioribose-1-phosphate isomerase; PFAM: initiation factor 2B related YP_004146805.1 KEGG: xal:XALc_1727 hypothetical_protein YP_004146806.1 TIGRFAM: lysyl-tRNA synthetase-related protein GenX; KEGG: xcv:XCV1669 lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N) YP_004146807.1 TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; BRCT domain protein; KEGG: smt:Smal_2583 NAD-dependent DNA ligase LigA; SMART: NAD-dependent DNA ligase ; BRCT domain protein YP_004146808.1 PFAM: aminotransferase class I and II; KEGG: xca:xccb100_2691 aminotransferase YP_004146809.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dsa:Desal_1832 glyoxalase/bleomycin resistance protein/dioxygenase YP_004146810.1 TIGRFAM: cell division protein ZipA; PFAM: ZipA FtsZ-binding region protein; KEGG: xal:XALc_1731 cell division protein zipa; SMART: ZipA FtsZ-binding region protein YP_004146811.1 KEGG: xac:XAC1623 chromosome segregation protein; TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain-containing protein YP_004146812.1 KEGG: rce:RC1_1183 hypothetical protein; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: FAD dependent oxidoreductase YP_004146813.1 PFAM: NADPH-dependent FMN reductase; KEGG: xac:XAC1476 hypothetical protein YP_004146814.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); KEGG: xop:PXO_04798 asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II YP_004146815.1 PFAM: transketolase domain-containing protein; transketolase; dehydrogenase E1 component; KEGG: sml:Smlt3207 oxidoreductase/transketolase YP_004146816.1 PFAM: GCN5-related N-acetyltransferase; KEGG: azl:AZL_022730 GCN5-related N-acetyltransferase YP_004146817.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ccs:CCNA_00329 ribosomal-protein-alanine acetyltransferase YP_004146818.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: smt:Smal_0159 acyl-CoA dehydrogenase domain protein YP_004146819.1 KEGG: sml:Smlt3210 outer membrane antigen protein YP_004146820.1 KEGG: sml:Smlt3211 transmembrane protein YP_004146821.1 KEGG: xcv:XCV1526 TatD related DNase; TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease YP_004146822.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: xop:PXO_04809 molybdopterin biosynthesis protein YP_004146823.1 KEGG: sml:Smlt3214 hypothetical protein YP_004146824.1 KEGG: sml:Smlt3215 outer membrane antigen lipoprotein YP_004146825.1 KEGG: sml:Smlt3216 cold shock protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein YP_004146826.1 PFAM: protein of unknown function DUF456; KEGG: smt:Smal_2650 protein of unknown function DUF456 YP_004146827.1 KEGG: xcb:XC_2818 calcium binding site; other site; PFAM: phospholipase A1 YP_004146828.1 KEGG: sml:Smlt3219 arsenate reductase; TIGRFAM: arsenate reductase; PFAM: arsenate reductase YP_004146829.1 PFAM: glutathione S-transferase domain; KEGG: xca:xccb100_2880 glutathione transferase YP_004146830.1 KEGG: xcv:XCV1517 fumarate hydratase; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit alpha; hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit beta; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region YP_004146831.1 KEGG: sml:Smlt3223 ECF-sigma factor; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2 YP_004146832.1 KEGG: sml:Smlt3224 carboxymuconolactone family protein; TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase YP_004146833.1 PFAM: LytTr DNA-binding region; KEGG: xca:xccb100_2139 AlgR/AgrA/LytR family regulatory protein RpfD YP_004146834.1 KEGG: ccs:CCNA_01683 acetyltransferase YP_004146835.1 KEGG: sml:Smlt2223 single-stranded-DNA-specific exonuclease; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1 YP_004146836.1 PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; KEGG: xop:PXO_00084 RpfE regulatory protein YP_004146837.1 KEGG: smt:Smal_1813 transcription elongation factor GreA; TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain-containing protein YP_004146838.1 KEGG: xal:XALc_1339 probable carbamoyl-phosphate synthetase large chain protein; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein YP_004146839.1 KEGG: xcv:XCV1907 carbamoyl phosphate synthase small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I YP_004146840.1 TIGRFAM: dihydrodipicolinate reductase; KEGG: smt:Smal_1810 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase YP_004146841.1 PFAM: protein of unknown function DUF2058; KEGG: sml:Smlt3179 hypothetical protein YP_004146842.1 PFAM: SlyX family protein; KEGG: xal:XALc_1653 hypothetical protein YP_004146843.1 KEGG: xal:XALc_1656 probable fkbp-type peptidyl-prolyl cis-trans isomerase protein; PFAM: peptidylprolyl isomerase FKBP-type; FKBP-type peptidyl-prolyl isomerase domain protein YP_004146844.1 KEGG: sml:Smlt3183 vitamin B12 transport protein; PFAM: glutathione peroxidase YP_004146845.1 KEGG: xca:xccb100_2772 hypothetical protein YP_004146846.1 KEGG: smt:Smal_2620 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_004146847.1 KEGG: xca:xccb100_2774 ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA YP_004146848.1 KEGG: xca:xccb100_2775 ABC transporter permease YP_004146849.1 KEGG: xcb:XC_2739 protein of unknown function (DUF2807); region: DUF2807; pfam10988 YP_004146850.1 KEGG: smt:Smal_2624 hypothetical protein YP_004146851.1 KEGG: sml:Smlt3189 hypothetical protein YP_004146852.1 PFAM: fumarate lyase; Fumarase C-like; KEGG: xcv:XCV1585 fumarate hydratase YP_004146853.1 KEGG: xca:xccb100_2781 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: adenylosuccinate lyase domain-containing protein; fumarate lyase YP_004146854.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: azo:azo2616 lactoylglutathione lyase YP_004146855.1 SMART: transcription factor jumonji jmjC domain-containing protein; KEGG: xcb:XC_2747 cupin superfamily protein; region: Cupin_4; pfam08007 YP_004146856.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sml:Smlt3196 acetyltransferase YP_004146857.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; KEGG: xca:xccb100_2785 2-oxoglutarate dehydrogenase E1 component; PFAM: transketolase; dehydrogenase E1 component YP_004146858.1 KEGG: xop:PXO_01197 dihydrolipoamide succinyltransferase; TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein YP_004146859.1 KEGG: smt:Smal_2632 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_004146860.1 KEGG: pen:PSEEN2927 major facilitator superfamily transporter YP_004146861.1 PFAM: Conserved hypothetical protein CHP00730; KEGG: xcv:XCV1575 hypothetical protein YP_004146862.1 KEGG: xal:XALc_0654 hypothetical protein; TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein YP_004146863.1 KEGG: cpi:Cpin_6737 glycoside hydrolase family 16; PFAM: glycoside hydrolase family 16 YP_004146864.1 KEGG: smt:Smal_3018 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_004146865.1 KEGG: smt:Smal_3019 heat shock protein DnaJ; PFAM: heat shock protein DnaJ; chaperone DnaJ domain protein; SMART: heat shock protein DnaJ YP_004146866.1 PFAM: heat shock protein Hsp20; KEGG: xca:xccb100_3297 low molecular weight heat shock protein YP_004146867.1 PFAM: redoxin; KEGG: xal:XALc_0650 peroxiredoxin oxidoreductase protein YP_004146868.1 TIGRFAM: penicillin-binding protein 1C; KEGG: sml:Smlt3602 penicillin-binding protein; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein YP_004146869.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: xcv:XCV1605 acyl-CoA dehydrogenase YP_004146870.1 KEGG: sml:Smlt3175 ArsR family transcriptional regulator; PFAM: methyltransferase type 11; regulatory protein ArsR; SMART: regulatory protein ArsR YP_004146871.1 PFAM: homocysteine S-methyltransferase; KEGG: xac:XAC1560 5-methyltetrahydrofolate-homocysteine methyl transferase YP_004146872.1 TIGRFAM: methionine synthase; KEGG: smt:Smal_2612 methionine synthase; PFAM: dihydropteroate synthase DHPS; methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; Vitamin B12 dependent methionine synthase activation region YP_004146873.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xca:xccb100_2119 3-hydroxyacyl-CoA dehydrogenase YP_004146874.1 KEGG: sml:Smlt2205 elongation factor P; TIGRFAM: elongation factor P-like protein YeiP; PFAM: Elongation factor P ; Elongation factor P/YeiP protein; Elongation factor KOW-like domain-containing protein YP_004146875.1 KEGG: xal:XALc_1329 hypothetical protein YP_004146876.1 KEGG: xop:PXO_06073 hypothetical protein; TIGRFAM: conserverd hypothetical protein; PFAM: Conserved hypothetical protein CHP02448 YP_004146877.1 PFAM: FAD linked oxidase; KEGG: xca:xccb100_2114 FAD linked oxidase probable YP_004146878.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein; KEGG: xca:xccb100_2112 D-3-phosphoglycerate dehydrogenase YP_004146879.1 PFAM: NUDIX hydrolase; KEGG: xcv:XCV1889 NUDIX hydrolase family protein YP_004146880.1 PFAM: amino acid permease-associated region; KEGG: xac:XAC1842 cationic amino acid transporter YP_004146881.1 KEGG: swd:Swoo_4486 Na+/H+ antiporter NhaC; TIGRFAM: Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter NhaC-like YP_004146882.1 TIGRFAM: methylthioribulose-1-phosphate dehydratase; KEGG: sml:Smlt2189 methylthioribulose-1-phosphate dehydratase; PFAM: class II aldolase/adducin family protein YP_004146883.1 KEGG: smt:Smal_1781 acireductone dioxygenase ARD; PFAM: acireductone dioxygenase YP_004146884.1 TIGRFAM: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: sml:Smlt2187 enolase-phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase YP_004146885.1 PFAM: metallophosphoesterase; KEGG: xcv:XCV1882 hypothetical protein YP_004146886.1 KEGG: xfn:XfasM23_1346 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase-like YP_004146887.1 KEGG: xcb:XC_2375 glutamase interaction surface; other site; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein YP_004146888.1 TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; KEGG: xca:xccb100_2100 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: histidine biosynthesis protein YP_004146889.1 KEGG: xac:XAC1832 imidazole glycerol phosphate synthase subunit HisH; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I YP_004146890.1 TIGRFAM: histidinol-phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: sml:Smlt2165 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; PFAM: imidazoleglycerol-phosphate dehydratase YP_004146891.1 KEGG: sml:Smlt2164 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II YP_004146892.1 TIGRFAM: histidinol dehydrogenase; KEGG: xal:XALc_1254 probable histidinol dehydrogenase (hdh) protein; PFAM: Histidinol dehydrogenase YP_004146893.1 TIGRFAM: ATP phosphoribosyltransferase; KEGG: sml:Smlt2162 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; histidine biosynthesis protein HisG domain YP_004146894.1 KEGG: xal:XALc_1252 hypothetical protein; TIGRFAM: TrpR like protein, YerC/YecD; PFAM: Trp repressor YP_004146895.1 KEGG: gvi:glr3066 histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase YP_004146896.1 TIGRFAM: histidyl-tRNA synthetase; KEGG: xcv:XCV1872 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); anticodon-binding domain protein YP_004146897.1 KEGG: sml:Smlt2159 FNR/CRP family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide-binding YP_004146898.1 SMART: KH domain protein; TIGRFAM: polyribonucleotide nucleotidyltransferase; KEGG: xca:xccb100_1653 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; polynucleotide phosphorylase, phosphorolytic RNA-binding; K Homology, type 1, subgroup; RNA binding S1 domain protein YP_004146899.1 KEGG: xop:PXO_01306 30S ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15 YP_004146900.1 KEGG: xca:xccb100_1651 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase II ; tRNA pseudouridine synthase B YP_004146901.1 KEGG: xal:XALc_1017 probable ribosome-binding factor a protein; TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A YP_004146902.1 KEGG: xal:XALc_1016 probable translation initiation factor if-2 protein; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain-containing protein; Initiation factor 2 associated domain protein ; elongation factor Tu domain 2 protein YP_004146903.1 KEGG: smt:Smal_2816 transcription elongation factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: NusA domain-containing protein; RNA binding S1 domain protein YP_004146904.1 PFAM: protein of unknown function DUF150; KEGG: xcv:XCV2839 hypothetical protein YP_004146905.1 KEGG: xca:xccb100_1646 NADH dehydrogenase subunit N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_004146906.1 KEGG: xca:xccb100_1645 NADH dehydrogenase subunit M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_004146907.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; KEGG: xcb:XC_1600 NADH dehydrogenase subunit L; Reviewed; region: PRK06590; PRK06590; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein YP_004146908.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: xal:XALc_1009 probable nadh-quinone oxidoreductase chain k (nadh dehydrogenaseI chain k) (ndh-1, chain k) (nuo11) oxidoreductase protein YP_004146909.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: xac:XAC2695 NADH dehydrogenase subunit J YP_004146910.1 KEGG: smt:Smal_2823 NADH dehydrogenase subunit I; TIGRFAM: NADH-quinone oxidoreductase, chain I YP_004146911.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: xal:XALc_1006 probable nadh-quinone oxidoreductase subunit h (nadh dehydrogenaseIsubunit h) (ndh-1 subunit h) (nuo8) oxidoreductase protein YP_004146912.1 KEGG: sml:Smlt3399 NADH dehydrogenase subunit G; TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; molybdopterin oxidoreductase YP_004146913.1 TIGRFAM: NADH-quinone oxidoreductase, F subunit; KEGG: xac:XAC2699 NADH-ubiquinone oxidoreductase NQO1 subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding YP_004146914.1 KEGG: xal:XALc_1003 Probable nadh-quinone oxidoreductase chain e (nadh dehydrogenaseI chain e) (ndh-1, chain e) (nuo5). oxidoreductase protein; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit YP_004146915.1 TIGRFAM: NADH dehydrogenase I, D subunit; KEGG: smt:Smal_2828 NADH dehydrogenase subunit D; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa YP_004146916.1 TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; KEGG: xcv:XCV2851 NADH dehydrogenase subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit YP_004146917.1 TIGRFAM: NADH-quinone oxidoreductase subunit beta; KEGG: xca:xccb100_1634 NADH dehydrogenase subunit B; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_004146918.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: xcv:XCV2853 NADH dehydrogenase subunit A YP_004146919.1 KEGG: smt:Smal_2832 preprotein translocase subunit SecG; TIGRFAM: preprotein translocase subunit SecG; PFAM: Preprotein translocase SecG subunit YP_004146920.1 TIGRFAM: triosephosphate isomerase; KEGG: xac:XAC2707 triosephosphate isomerase; PFAM: triosephosphate isomerase YP_004146921.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: sml:Smlt3409 flavonol synthase/dioxygenase YP_004146922.1 KEGG: xca:xccb100_1623 phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase YP_004146923.1 KEGG: smt:Smal_2840 acetyl-CoA carboxylase subunit beta; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; PFAM: carboxyl transferase YP_004146924.1 KEGG: smt:Smal_2917 hypothetical protein YP_004146925.1 KEGG: xcv:XCV1453 hypothetical protein YP_004146926.1 PFAM: protein of unknown function DUF502; KEGG: xcv:XCV1452 hypothetical protein YP_004146927.1 KEGG: sml:Smlt3493 ACR family transmembrane transporter protein; TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165 YP_004146928.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: xac:XAC2744 phytoene dehydrogenase YP_004146929.1 PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: nhl:Nhal_0109 beta-lactamase YP_004146930.1 KEGG: xcv:XCV2898 metallopeptidase; PFAM: peptidase M13; peptidase M13, neprilysin-like YP_004146931.1 KEGG: sml:Smlt3450 exported endopeptidase; PFAM: peptidase M13; peptidase M13, neprilysin-like YP_004146932.1 PFAM: rhomboid family protein; KEGG: xal:XALc_2443 hypothetical uncharacterized membrane protein YP_004146933.1 PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: xal:XALc_2444 6-O-methylguanine dna methyltransferase protein YP_004146934.1 PFAM: phosphate transporter; KEGG: xca:xccb100_2568 probable low-affinity inorganic phosphate transporter YP_004146935.1 KEGG: smt:Smal_1442 hypothetical protein YP_004146936.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: xca:xccb100_2570 HlyC/CorC family transporter YP_004146937.1 PFAM: Exopolysaccharide synthesis ExoD; KEGG: xac:XAC1708 ExoD protein YP_004146938.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: smt:Smal_2744 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein YP_004146939.1 KEGG: sml:Smlt3320 SpoU-family tRNA/rRNA methyltransferase; TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU) YP_004146940.1 PFAM: inositol monophosphatase; KEGG: xac:XAC2385 extragenic supressor protein SuhB YP_004146941.1 KEGG: sml:Smlt2012 preprotein translocase subunit SecF; TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein YP_004146942.1 KEGG: xal:XALc_1928 probable SecD export membrane protein; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein YP_004146943.1 KEGG: sml:Smlt2010 preprotein translocase subunit YajC; TIGRFAM: preprotein translocase subunit YajC; PFAM: YajC family protein YP_004146944.1 TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; KEGG: xac:XAC2513 queuine tRNA-ribosyltransferase; PFAM: queuine/other tRNA-ribosyltransferase YP_004146945.1 KEGG: sml:Smlt3541 23S rRNA 5-methyluridine methyltransferase; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: (uracil-5)-methyltransferase; deoxyribonuclease/rho motif-related TRAM YP_004146946.1 KEGG: sml:Smlt3542 two component regulator response regulator transcriptional regulatory protein; PFAM: response regulator receiver; Hpt domain protein; SMART: response regulator receiver YP_004146947.1 PFAM: inner membrane protein CreD; KEGG: smt:Smal_1206 hypothetical protein YP_004146948.1 KEGG: xac:XAC2854 sensory histidine kinase CreC; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_004146949.1 KEGG: sml:Smlt1436 DNA-binding response regulator CreB; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_004146950.1 PFAM: protein of unknown function DUF519; KEGG: xal:XALc_2064 hypothetical protein YP_004146951.1 KEGG: pna:Pnap_4859 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein YP_004146952.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xal:XALc_2065 hypothetical acetyltransferase family protein YP_004146953.1 TIGRFAM: transcription-repair coupling factor; PFAM: TRCF domain protein; transcription factor CarD; DEAD/DEAH box helicase domain protein; helicase; KEGG: smt:Smal_1201 transcription-repair coupling factor; SMART: DEAD-like helicase ; helicase YP_004146954.1 KEGG: sml:Smlt1432 HD domain signalling protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_004146955.1 KEGG: xca:xccb100_1455 cardiolipin synthase family enzyme; PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase YP_004146956.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pzu:PHZ_c0633 acetyltransferase, GNAT family YP_004146957.1 KEGG: dac:Daci_3076 hypothetical protein YP_004146958.1 KEGG: dac:Daci_3075 PepSY-associated TM helix domain-containing protein YP_004146959.1 KEGG: dac:Daci_3074 hypothetical protein YP_004146960.1 KEGG: ajs:Ajs_3929 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004146961.1 KEGG: acp:A2cp1_0049 Na+/solute symporter YP_004146962.1 TIGRFAM: phosphoglycerate mutase 1 family; KEGG: smt:Smal_1198 phosphoglyceromutase; PFAM: phosphoglycerate mutase YP_004146963.1 PFAM: pirin; KEGG: xac:XAC2877 pirin-related protein YP_004146964.1 KEGG: xal:XALc_2044 probable poly-beta-hydroxyalkanoate depolymerase protein; TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein YP_004146965.1 KEGG: sml:Smlt1485 transmembrane protein YP_004146966.1 PFAM: transcriptional regulator PadR family protein; KEGG: smt:Smal_1244 PadR family transcriptional regulator YP_004146967.1 KEGG: xcv:XCV2946 secreted peptidyl prolyl cis-trans isomerase, cyclophilin type YP_004146968.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: xac:XAC2790 hypothetical protein YP_004146969.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: xac:XAC2791 transcriptional regulator YP_004146970.1 KEGG: xca:xccb100_1531 hypothetical protein YP_004146971.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: smt:Smal_1238 glutathione-dependent formaldehyde-activating GFA YP_004146972.1 PFAM: protein of unknown function DUF885; KEGG: xca:xccb100_1529 hypothetical protein YP_004146973.1 PFAM: beta-lactamase; KEGG: xal:XALc_2047 beta-lactamase protein YP_004146974.1 PFAM: protein of unknown function DUF72; KEGG: xac:XAC2808 hypothetical protein YP_004146975.1 PFAM: Uncharacterised conserved protein UCP020606; KEGG: tbd:Tbd_2287 integral membrane protein YP_004146976.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: xca:xccb100_1522 hypothetical protein YP_004146977.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: xcv:XCV2971 sensor protein; SMART: GGDEF domain containing protein; GAF domain protein YP_004146978.1 KEGG: smt:Smal_1228 pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_004146979.1 SMART: GGDEF domain containing protein; TIGRFAM: diguanylate cyclase; KEGG: smt:Smal_1227 diguanylate cyclase; PFAM: GGDEF domain containing protein YP_004146980.1 KEGG: sml:Smlt1461 DEAD-box helicase; PFAM: DEAD/DEAH box helicase; helicase; DbpA RNA-binding domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_004146981.1 KEGG: xca:xccb100_1510 hypothetical protein YP_004146982.1 KEGG: xal:XALc_2054 hypothetical protein YP_004146983.1 KEGG: msm:MSMEG_5547 hypothetical protein YP_004146984.1 KEGG: sml:Smlt1378 transmembrane protein YP_004146985.1 KEGG: nmg:Nmag_3910 FAD-linked oxidoreductase YP_004146986.1 KEGG: slo:Shew_0295 hypothetical protein YP_004146987.1 KEGG: oaa:100075175 similar to KIAA0096 YP_004146988.1 KEGG: sde:Sde_2347 hypothetical protein YP_004146989.1 KEGG: dia:Dtpsy_2675 OmpA/MotB domain protein YP_004146991.1 manually curated; KEGG: psl:Psta_3059 hypothetical protein YP_004146992.1 KEGG: azo:azo3635 acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase YP_004146993.1 KEGG: bvi:Bcep1808_0263 hypothetical protein YP_004146994.1 manually curated; KEGG: etw:ECSP_5368 hypothetical protein YP_004146995.1 KEGG: ddf:DEFDS_0878 hypothetical protein YP_004146996.1 KEGG: smt:Smal_1796 hypothetical protein YP_004146997.1 KEGG: xca:xccb100_0369 tyrosine recombinase; TIGRFAM: integron integrase; PFAM: integrase family protein YP_004146998.1 TIGRFAM: urocanate hydratase; KEGG: rhi:NGR_b13240 urocanate hydratase; PFAM: Urocanase YP_004146999.1 KEGG: tgo:TGME49_033030 myosin-A docking protein YP_004147000.1 KEGG: xca:xccb100_1507 phosphodiesterase-nucleotide pyrophosphatase; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase YP_004147001.1 KEGG: smt:Smal_1219 transcriptional regulator, AraC family; PFAM: Ada metal-binding domain-containing protein; helix-turn-helix- domain containing protein AraC type; AlkA domain protein; HhH-GPD family protein; SMART: Helix-turn-helix, AraC domain; HhH-GPD family protein YP_004147002.1 KEGG: xac:XAC2823 6-O-methylguanine-DNA methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylguanine DNA methyltransferase ribonuclease domain protein YP_004147003.1 TIGRFAM: tryptophan synthase subunit alpha; KEGG: sml:Smlt3417 tryptophan synthase subunit alpha; PFAM: tryptophan synthase alpha chain YP_004147004.1 KEGG: xal:XALc_0986 probable tryptophan synthase beta chain protein; TIGRFAM: tryptophan synthase subunit beta; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta YP_004147005.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pfl:PFL_0038 transcriptional regulator TrpI YP_004147006.1 KEGG: rrs:RoseRS_0935 peptidase domain-containing protein YP_004147007.1 KEGG: oaa:100084223 similar to neural precursor cell expressed, developmentally down-regulated 9 YP_004147008.1 KEGG: xal:XALc_2563 probable abc transporter permease and atp-binding peptide transporter, abc transporter atp-binding protein; PFAM: ABC transporter; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: ATPase AAA YP_004147009.1 KEGG: dya:Dyak_GE11687 GE11687 gene product from transcript GE11687-RA YP_004147010.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: xal:XALc_2555 probable membrane fusion transmembrane protein YP_004147011.1 KEGG: xac:XAC1925 transcriptional regulator; PFAM: hypothetical protein; SMART: hypothetical protein YP_004147012.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: xop:PXO_01268 N-(5'-phosphoribosyl)anthranilate isomerase YP_004147013.1 TIGRFAM: tRNA pseudouridine synthase A; KEGG: xcv:XCV2872 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain YP_004147014.1 TIGRFAM: FimV C-terminal domain; FimV N-terminal domain; KEGG: xal:XALc_0982 hypothetical protein YP_004147015.1 TIGRFAM: aspartate-semialdehyde dehydrogenase; KEGG: smt:Smal_2854 aspartate-semialdehyde dehydrogenase; PFAM: semialdehyde dehydrogenase dimerisation region; semialdehyde dehydrogenase NAD - binding YP_004147016.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: xca:xccb100_1612 gluconate 2-dehydrogenase YP_004147017.1 TIGRFAM: chorismate synthase; KEGG: sml:Smlt3429 chorismate synthase; PFAM: chorismate synthase YP_004147018.1 TIGRFAM: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific; modification methylase, HemK family; KEGG: xca:xccb100_1609 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; PFAM: methyltransferase small YP_004147019.1 PFAM: electron transporter SCO1/SenC; KEGG: sml:Smlt3431 exported Sco1/SenC family protein YP_004147020.1 TIGRFAM: phosphatidylserine decarboxylase; KEGG: xcb:XC_1563 phosphatidylserine decarboxylase; region: PS_Dcarbxylase; cl03656; PFAM: phosphatidylserine decarboxylase-related YP_004147021.1 KEGG: xoo:XOO3266 membrane-bound lytic murein transglycosylase D precursor; PFAM: lytic transglycosylase catalytic; peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding LysM YP_004147022.1 PFAM: protein of unknown function DUF853 NPT hydrolase; KEGG: smt:Smal_2862 protein of unknown function DUF853 NPT hydrolase YP_004147023.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ttu:TERTU_1254 3-demethylubiquinone-9 3-methyltransferase domain protein YP_004147024.1 KEGG: sml:Smlt3436 transcription elongation factor GreB; TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain-containing protein YP_004147025.1 KEGG: xca:xccb100_0817 hypothetical protein; TIGRFAM: degV family protein; PFAM: DegV family protein YP_004147026.1 TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; radical SAM protein; KEGG: xcb:XC_1554 FeS/SAM binding site; other site; SMART: Elongator protein 3/MiaB/NifB YP_004147027.1 KEGG: xcv:XCV2888 dienelactone hydrolase YP_004147028.1 PFAM: histidine triad (HIT) protein; KEGG: xcv:XCV2889 hypothetical protein YP_004147029.1 KEGG: xop:PXO_01244 hypothetical protein YP_004147030.1 KEGG: xcv:XCV2891 hypothetical protein YP_004147031.1 TIGRFAM: deoxycytidine triphosphate deaminase; KEGG: smt:Smal_2869 deoxycytidine triphosphate deaminase YP_004147032.1 PFAM: ATPase-like, ParA/MinD; KEGG: xcv:XCV2893 ATP-binding protein YP_004147033.1 KEGG: kko:Kkor_2286 sulfotransferase YP_004147034.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: smt:Smal_2872 TonB-dependent receptor YP_004147035.1 KEGG: smt:Smal_2873 peptidase S9 prolyl oligopeptidase active site domain protein YP_004147036.1 PFAM: protein of unknown function DUF2147; KEGG: sml:Smlt3497 hypothetical protein YP_004147037.1 KEGG: sml:Smlt3498 methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase subunit beta; PFAM: tRNA synthetase class I (M); t-RNA-binding domain-containing protein YP_004147038.1 TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase-like); KEGG: xca:xccb100_2959 phosphatase YP_004147039.1 KEGG: bgl:bglu_2g14830 hypothetical protein YP_004147040.1 KEGG: xac:XAC1384 ferredoxin; TIGRFAM: electron transport complex, RnfABCDGE type subunit beta; PFAM: Fe-S cluster domain protein YP_004147041.1 PFAM: GumN family protein; KEGG: xal:XALc_1096 hypothetical protein YP_004147042.1 PFAM: protein of unknown function DUF1684; KEGG: xom:XOO_2576 hypothetical protein YP_004147043.1 KEGG: xca:xccb100_1880 DNA mismatch repair protein; TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein YP_004147044.1 KEGG: smt:Smal_2755 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin YP_004147045.1 PFAM: Uncharacterised protein family UPF0079, ATPase; KEGG: xca:xccb100_1878 hypothetical protein YP_004147046.1 KEGG: xal:XALc_1091 hypothetical protein; TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain-containing protein YP_004147047.1 KEGG: xcb:XC_1813 domain of unknown function (DUF1730); region: DUF1730; pfam08331; TIGRFAM: iron-sulfur cluster binding protein; PFAM: hypothetical protein YP_004147048.1 KEGG: xcb:XC_1812 generic binding surface I; other site; TIGRFAM: exodeoxyribonuclease VII large subunit; PFAM: exonuclease VII, large subunit-like; nucleic acid binding OB-fold tRNA/helicase-type YP_004147049.1 PFAM: glycosyl transferase group 1; KEGG: smt:Smal_0818 glycosyl transferase group 1 YP_004147050.1 KEGG: xca:xccb100_3393 lipid phosphatase; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related YP_004147051.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: xca:xccb100_1473 carbon-nitrogen hydrolase family protein YP_004147052.1 KEGG: xca:xccb100_1472 hypothetical protein YP_004147053.1 KEGG: sml:Smlt3547 DNA repair protein RecO; TIGRFAM: DNA repair protein RecO; PFAM: recombination protein O RecO YP_004147054.1 KEGG: xal:XALc_2540 probable gtp-binding protein era; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein YP_004147055.1 SMART: ribonuclease III; double-stranded RNA binding domain protein; TIGRFAM: ribonuclease III; KEGG: xal:XALc_2541 probable ribonuclease III protein; PFAM: ribonuclease III; double-stranded RNA binding domain protein YP_004147056.1 KEGG: xcv:XCV1375 hypothetical protein YP_004147057.1 TIGRFAM: signal peptidase I; KEGG: xca:xccb100_3032 hypothetical protein; PFAM: peptidase S24/S26A/S26B, conserved region YP_004147058.1 KEGG: xac:XAC1322 GTP-binding protein LepA; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: GTP-binding protein LepA domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein YP_004147059.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: sml:Smlt3553 subfamily S1C unassigned peptidase; SMART: PDZ/DHR/GLGF domain protein YP_004147060.1 PFAM: anti sigma-E protein RseA family protein; KEGG: xal:XALc_2546 regulatory protein YP_004147061.1 KEGG: xac:XAC1319 RNA polymerase sigma factor RpoE; TIGRFAM: RNA polymerase sigma factor RpoE; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2 YP_004147062.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: xcb:XC_2975 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; region: 3HCDH; pfam00725 YP_004147063.1 KEGG: xac:XAC4285 hypothetical protein YP_004147064.1 PFAM: type IV pilus assembly PilZ; KEGG: smt:Smal_0879 type IV pilus assembly PilZ YP_004147065.1 KEGG: xca:xccb100_3335 DNA polymerase III subunit delta' YP_004147066.1 TIGRFAM: thymidylate kinase; KEGG: xal:XALc_0631 probable thymidylate kinase (dTMP kinase) protein; PFAM: thymidylate kinase YP_004147067.1 PFAM: aminodeoxychorismate lyase; KEGG: xcv:XCV1150 hypothetical protein YP_004147068.1 TIGRFAM: para-aminobenzoate synthase component I; KEGG: xal:XALc_0629 anthranilate synthase componentIprotein; PFAM: chorismate binding-like; anthranilate synthase component I domain protein YP_004147069.1 KEGG: xac:XAC1129 3-oxoacyl-(acyl carrier protein) synthase II; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: beta-ketoacyl synthase YP_004147070.1 KEGG: xal:XALc_0627 probable acyl carrier protein (acp); TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding YP_004147071.1 KEGG: xca:xccb100_3340 3-ketoacyl-(acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR YP_004147072.1 manually curated; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; KEGG: xop:PXO_02708 malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase YP_004147073.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; KEGG: sml:Smlt1026 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_004147074.1 KEGG: xac:XAC1122 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein YP_004147075.1 KEGG: sml:Smlt1024 characterised ACR protein; manually curated; PFAM: protein of unknown function DUF177 YP_004147076.1 KEGG: sml:Smlt1023 Maf-like protein; TIGRFAM: maf protein; PFAM: Maf family protein YP_004147077.1 KEGG: xal:XALc_0620 hypothetical protein YP_004147078.1 KEGG: xcv:XCV1134 MoxR-like ATPase; PFAM: ATPase associated with various cellular activities AAA_3; SMART: ATPase AAA YP_004147079.1 PFAM: protein of unknown function DUF58; KEGG: xca:xccb100_3353 hypothetical protein YP_004147080.1 KEGG: xal:XALc_0617 hypothetical protein; PFAM: transglutaminase; SMART: transglutaminase YP_004147081.1 PFAM: outer membrane lipoprotein Slp; KEGG: xca:xccb100_3355 Slp family outer membrane protein YP_004147082.1 PFAM: histidine triad (HIT) protein; KEGG: sml:Smlt1017 hypothetical protein YP_004147083.1 TIGRFAM: recombination protein RecR; PFAM: Zinc finger C4-type, RecR; TOPRIM domain-containing protein; KEGG: xop:PXO_02441 recombination protein RecR; SMART: Toprim sub domain-containing protein YP_004147084.1 PFAM: Uncharacterised protein family UPF0133; KEGG: xal:XALc_0613 hypothetical protein YP_004147085.1 SMART: ATPase AAA; TIGRFAM: DNA polymerase III subunits gamma/tau; KEGG: xcv:XCV1127 DNA polymerase III subunits gamma/tau; PFAM: ATPase AAA YP_004147086.1 KEGG: xau:Xaut_2644 hypothetical protein YP_004147087.1 PFAM: SMP-30/gluconolaconase/LRE-like region-containing protein; KEGG: pen:PSEEN2341 hypothetical protein YP_004147088.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: xal:XALc_0610 probable molybdopterin-converting factor chain 2 protein YP_004147089.1 PFAM: thiamineS protein; KEGG: xal:XALc_0609 probable molybdopterin-converting factor chain 1 protein YP_004147090.1 KEGG: xal:XALc_0608 probable molybdenum cofactor biosynthesis protein C; TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis protein MoaC YP_004147091.1 TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis protein; radical SAM domain protein; KEGG: xca:xccb100_3364 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB YP_004147092.1 KEGG: smt:Smal_0851 beta-lactamase YP_004147093.1 KEGG: smt:Smal_0850 3-deoxy-D-manno-octulosonic-acid kinase YP_004147094.1 PFAM: glycosyl transferase family 9; KEGG: xal:XALc_0603 lipopolysaccharide core biosynthesis heptosyltransferase protein YP_004147095.1 PFAM: Spermine synthase; KEGG: cja:CJA_2726 spermine/spermidine synthase family protein YP_004147096.1 KEGG: xal:XALc_0602 hypothetical protein YP_004147097.1 PFAM: fimbrial protein domain-containing protein; KEGG: she:Shewmr4_2237 fimbrial protein YP_004147098.1 PFAM: Pili assembly chaperone, N-terminal; KEGG: reu:Reut_A1695 twin-arginine translocation pathway signal YP_004147099.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: rme:Rmet_0574 fimbrial biogenesis outer membrane usher protein YP_004147100.1 PFAM: fimbrial protein domain-containing protein; KEGG: rme:Rmet_2545 fimbrial protein YP_004147101.1 KEGG: sml:Smlt0999 phosphatase; PFAM: protein phosphatase 2C-like; stage II sporulation protein E; SMART: protein phosphatase 2C domain protein YP_004147102.1 SMART: exonuclease; TIGRFAM: DNA polymerase III epsilon subunit; KEGG: xal:XALc_0599 probable dna polymerase III, subunit epsilon protein; PFAM: exonuclease RNase T and DNA polymerase III YP_004147103.1 PFAM: ribonuclease H; KEGG: sml:Smlt0997 ribonuclease H YP_004147104.1 KEGG: xal:XALc_0597 hypothetical protein YP_004147105.1 KEGG: xal:XALc_0596 probable hydroxyacylglutathione hydrolase (glyoxalase II) protein; TIGRFAM: hydroxyacylglutathione hydrolase YP_004147106.1 manually curated; PFAM: lytic transglycosylase catalytic; peptidoglycan-binding lysin domain; KEGG: smt:Smal_0841 lytic transglycosylase catalytic; SMART: peptidoglycan-binding LysM YP_004147107.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: xcv:XCV1085 peptidylprolyl isomerase YP_004147108.1 KEGG: xcv:XCV1084 histone-like protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein YP_004147109.1 SMART: peptidase S16; AAA ATPase; TIGRFAM: ATP-dependent protease La; KEGG: xca:xccb100_3378 endopeptidase La; PFAM: peptidase S16; ATPase AAA central domain protein YP_004147110.1 TIGRFAM: ATP-dependent Clp protease ATP-binding subunit ClpX; PFAM: ATPase AAA; Clp ATPase-like; KEGG: xac:XAC1079 ATP-dependent protease ATP-binding subunit ClpX; SMART: ATPase AAA YP_004147111.1 TIGRFAM: ATP-dependent Clp protease proteolytic subunit ClpP; KEGG: xal:XALc_0587 probable atp-dependent clp protease proteolytic subunit protein; PFAM: peptidase S14 ClpP YP_004147112.1 KEGG: xcv:XCV1080 trigger factor; TIGRFAM: trigger factor; PFAM: trigger factor domain-containing protein; peptidylprolyl isomerase FKBP-type YP_004147113.1 KEGG: xcb:XC_3267 predicted membrane protein [function unknown]; region: COG4760; COG4760 YP_004147114.1 KEGG: sml:Smlt0982 isocitrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_004147115.1 KEGG: xal:XALc_0578 carboxymuconolactone decarboxylase protein; TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase YP_004147116.1 KEGG: sml:Smlt0980 glutaredoxin; TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin YP_004147117.1 PFAM: peptidase M48 Ste24p; KEGG: xal:XALc_0576 zn-dependent protease protein YP_004147118.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; KEGG: xal:XALc_0575 probable two-component system regulatory protein PhoB; SMART: response regulator receiver YP_004147119.1 TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: xca:xccb100_3389 two-component system sensor protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_004147120.1 TIGRFAM: polyphosphate kinase; KEGG: smt:Smal_0822 polyphosphate kinase; PFAM: polyphosphate kinase YP_004147121.1 KEGG: xca:xccb100_3391 hypothetical protein; PFAM: Ppx/GppA phosphatase YP_004147122.1 KEGG: bbr:BB3267 hypothetical protein; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A YP_004147123.1 KEGG: xca:xccb100_1415 aspartate carbamoyltransferase catalytic subunit; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region YP_004147124.1 KEGG: xac:XAC2917 Holliday junction resolvase-like protein; PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold YP_004147125.1 PFAM: protein of unknown function DUF179; KEGG: xal:XALc_2157 hypothetical protein YP_004147126.1 PFAM: methyladenine glycosylase; KEGG: xal:XALc_2158 methyladenine glycosylase protein YP_004147127.1 PFAM: protein of unknown function DUF72; KEGG: xcv:XCV3065 hypothetical protein YP_004147128.1 PFAM: protein of unknown function DUF161; KEGG: xcv:XCV3066 hypothetical protein YP_004147129.1 KEGG: xcb:XC_1359 Walker B motif; other site; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E YP_004147130.1 KEGG: xac:XAC2924 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E YP_004147131.1 PFAM: alanine racemase domain protein; KEGG: sml:Smlt1088 hypothetical protein YP_004147132.1 TIGRFAM: pyrroline-5-carboxylate reductase; KEGG: sml:Smlt1087 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent YP_004147133.1 KEGG: aha:AHA_3660 hypothetical protein YP_004147134.1 KEGG: xop:PXO_04764 hypothetical protein YP_004147135.1 PFAM: pirin; KEGG: smt:Smal_2986 pirin domain protein YP_004147136.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: xca:xccb100_1835 putrescine ABC transporter permease YP_004147137.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: xcv:XCV2649 putrescine ABC transporter permease YP_004147138.1 TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter; transport-associated OB domain-containing protein; KEGG: xac:XAC2472 ATP-binding component of putrescine transporter; SMART: ATPase AAA YP_004147139.1 PFAM: extracellular solute-binding protein family 1; KEGG: xcb:XC_1772 the substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; region: PBP2_LTTR_substrate; cl11398 YP_004147140.1 PFAM: extracellular solute-binding protein family 1; KEGG: smt:Smal_1341 extracellular solute-binding protein family 1 YP_004147141.1 PFAM: aminotransferase class-III; KEGG: xcv:XCV2655 aminotransferase YP_004147142.1 KEGG: xal:XALc_2094 glutamine synthetase protein; PFAM: glutamine synthetase; glutamine synthetase beta-Grasp YP_004147143.1 KEGG: xac:XAC2479 glutamine amidotransferase; PFAM: peptidase C26 YP_004147144.1 KEGG: xal:XALc_2096 glutamine synthase protein; PFAM: glutamine synthetase YP_004147145.1 PFAM: FAD dependent oxidoreductase; KEGG: xal:XALc_2097 oxidoreductase oxidoreductase protein YP_004147146.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: xcv:XCV2660 two-component system response regulator; SMART: GGDEF domain containing protein; response regulator receiver YP_004147147.1 KEGG: xac:XAC2483 hypothetical protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein YP_004147148.1 KEGG: xom:XOO_2628 metabolite transporter YP_004147149.1 KEGG: sml:Smlt0571 hypothetical protein YP_004147150.1 KEGG: xcb:XC_2189 hypothetical protein YP_004147151.1 KEGG: sml:Smlt2524 transmembrane protein YP_004147152.1 PFAM: major facilitator superfamily MFS_1; KEGG: sml:Smlt1760 transmembrane major facilitator superfamily transporter protein YP_004147153.1 KEGG: dsh:Dshi_2308 hypothetical protein YP_004147154.1 KEGG: smt:Smal_0449 hypothetical protein YP_004147155.1 KEGG: azo:azo2617 HAD superfamily hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_004147156.1 KEGG: xcv:XCV0575 hypothetical protein YP_004147157.1 KEGG: sml:Smlt2636 exodeoxyribonuclease III protein; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: endonuclease/exonuclease/phosphatase YP_004147159.1 PFAM: protein of unknown function DUF72; KEGG: xcv:XCV0661 hypothetical protein YP_004147160.1 TIGRFAM: dihydrodipicolinate synthase; KEGG: aav:Aave_1337 dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase YP_004147161.1 PFAM: lipocalin; KEGG: smt:Smal_3760 lipocalin family protein YP_004147162.1 KEGG: gga:424684 ankyrin repeat domain 38 YP_004147163.1 KEGG: xcv:XCV4367 hypothetical protein YP_004147164.1 PFAM: protein of unknown function DUF1264; KEGG: xcb:XC_2187 protein of unknown function (DUF1264); region: DUF1264; pfam06884 YP_004147165.1 KEGG: pzu:PHZ_c2964 hypothetical protein YP_004147166.1 KEGG: psa:PST_0169 organic hydroperoxide resistance protein; TIGRFAM: peroxiredoxin, Ohr subfamily; PFAM: OsmC family protein YP_004147167.1 PFAM: protein of unknown function DUF1810; KEGG: pmy:Pmen_2192 hypothetical protein YP_004147168.1 KEGG: dac:Daci_2168 lysine exporter protein LysE/YggA YP_004147169.1 KEGG: aag:AaeL_AAEL007688 serine/threonine protein kinase YP_004147170.1 KEGG: pfr:PFREUD_17760 sensor kinase-membrane protein YP_004147171.1 KEGG: net:Neut_2269 ATPase, P-type (transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase YP_004147172.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; hypothetical protein; GAF domain protein; KEGG: ctt:CtCNB1_3472 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAC repeat-containing protein; PAS domain containing protein YP_004147173.1 KEGG: scl:sce5426 hypothetical protein YP_004147174.1 KEGG: bgl:bglu_4p0390 TraB pilus assembly family protein YP_004147175.1 KEGG: bbr:BB2404 hypothetical protein YP_004147176.1 PFAM: aldehyde dehydrogenase; KEGG: xal:XALc_2105 aldehyde dehydrogenase protein YP_004147177.1 KEGG: enc:ECL_00959 chloride channel protein YP_004147178.1 KEGG: cvi:CV_2021 transcriptional regulator; PFAM: Cupin 2 conserved barrel domain protein; hypothetical protein; SMART: hypothetical protein YP_004147179.1 PFAM: aminotransferase class-III; KEGG: xal:XALc_1971 aminotransferase class-III family protein YP_004147180.1 TIGRFAM: alanine dehydrogenase; KEGG: xal:XALc_1972 probable alanine dehydrogenase oxidoreductase protein; PFAM: alanine dehydrogenase/PNT domain protein YP_004147181.1 KEGG: azl:AZL_b01030 methylmalonate-semialdehyde dehydrogenase; TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase YP_004147182.1 PFAM: protein of unknown function DUF445; KEGG: smt:Smal_1327 protein of unknown function DUF445 YP_004147183.1 KEGG: tko:TK0632 chemotaxis response regulator; PFAM: response regulator receiver; SMART: response regulator receiver YP_004147184.1 KEGG: gme:Gmet_1606 hypothetical protein YP_004147185.1 KEGG: xcb:XC_2689 S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); region: AdoMet_MTases; cl12011; PFAM: RNA methylase; THUMP domain-containing protein YP_004147186.1 PFAM: transposase IS4 family protein; KEGG: bpl:BURPS1106A_3889 transposase, IS4 YP_004147187.1 KEGG: xca:xccb100_2719 hypothetical protein YP_004147188.1 KEGG: xca:xccb100_2720 hypothetical protein; manually curated; PFAM: MOSC domain containing protein YP_004147189.1 KEGG: xal:XALc_1980 N-acetylmuramoyl-L-alanine amidase protein; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2 YP_004147190.1 KEGG: sml:Smlt1271 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase YP_004147191.1 KEGG: sml:Smlt1270 hypothetical protein YP_004147192.1 KEGG: smt:Smal_1110 hypothetical protein YP_004147193.1 PFAM: Arginine-tRNA-protein transferase domain protein; KEGG: sml:Smlt1266 arginyl-tRNA-protein transferase YP_004147194.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: sml:Smlt1265 exported endonuclease/exonuclease/phosphatase family protein YP_004147195.1 PFAM: Roadblock/LC7 family protein; KEGG: pna:Pnap_2813 roadblock/LC7 family protein YP_004147196.1 KEGG: pna:Pnap_2812 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein YP_004147197.1 KEGG: pna:Pnap_2811 ABC-type phosphate/phosphonate transporter periplasmic component YP_004147198.1 KEGG: pna:Pnap_2810 hypothetical protein YP_004147199.1 KEGG: pna:Pnap_2808 hypothetical protein YP_004147200.1 TIGRFAM: phosphoribosylglycinamide formyltransferase 2; KEGG: sml:Smlt1264 phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; saccharopine dehydrogenase YP_004147201.1 KEGG: smt:Smal_1106 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein YP_004147202.1 KEGG: xca:xccb100_3204 hypothetical protein YP_004147203.1 KEGG: xcv:XCV1266 hypothetical protein YP_004147204.1 KEGG: sml:Smlt1261 hypothetical protein YP_004147206.1 KEGG: xal:XALc_0902 hypothetical protein YP_004147207.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: xal:XALc_0901 hypothetical protein YP_004147208.1 PFAM: FAD linked oxidase; KEGG: mpt:Mpe_A3539 FAD/FMN-containing dehydrogenases-like protein YP_004147209.1 KEGG: pfo:Pfl01_3685 cytochrome b561 YP_004147210.1 KEGG: xcv:XCV1264 DNA-3-methyladenine glycosylase; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein YP_004147211.1 PFAM: protein of unknown function DUF423; KEGG: xal:XALc_0900 hypothetical protein YP_004147212.1 KEGG: xal:XALc_0899 hypothetical protein YP_004147213.1 KEGG: smt:Smal_1099 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_004147214.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: xom:XOO_3334 two-component system sensor protein YP_004147215.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xac:XAC1227 hypothetical protein YP_004147216.1 KEGG: xac:XAC1226 septum formation inhibitor; TIGRFAM: septum site-determining protein MinC; PFAM: septum formation inhibitor MinC YP_004147217.1 TIGRFAM: septum site-determining protein MinD; KEGG: sml:Smlt1251 septum site-determining protein YP_004147218.1 KEGG: xal:XALc_0893 probable cell division topological specificity factor protein; TIGRFAM: cell division topological specificity factor MinE; PFAM: septum formation topological specificity factor MinE YP_004147219.1 KEGG: sml:Smlt1249 hypothetical protein YP_004147220.1 KEGG: xal:XALc_0891 two-component system sensor transmembrane protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_004147222.1 KEGG: xcb:XC_3126 DNA binding site; other site; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_004147223.1 PFAM: glycosyl transferase family 39; KEGG: xcb:XC_3127 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [cell envelope biogenesis, outer membrane]; region: ArnT; COG1807 YP_004147224.1 KEGG: xcv:XCV1251 hypothetical protein YP_004147225.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: xcv:XCV1250 membrane-associated hydrolase YP_004147226.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: bpa:BPP2886 transposase YP_004147227.1 KEGG: xcv:XCV1249 peptidyl dipeptidase precursor; PFAM: peptidase M2 peptidyl-dipeptidase A YP_004147228.1 KEGG: xca:xccb100_3227 hypothetical protein YP_004147229.1 KEGG: xca:xccb100_3228 MFS transporter; TIGRFAM: drug resistance transporter Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1 YP_004147230.1 KEGG: gau:GAU_3482 hypothetical membrane protein YP_004147231.1 PFAM: protein of unknown function DUF2236; KEGG: aau:AAur_3596 hypothetical protein YP_004147232.1 KEGG: xcv:XCV1243 glycine dehydrogenase; TIGRFAM: glycine dehydrogenase; PFAM: glycine cleavage system P-protein-like YP_004147233.1 KEGG: pcr:Pcryo_2453 OmpA-like transmembrane region YP_004147234.1 KEGG: sml:Smlt3584 hypothetical protein YP_004147235.1 KEGG: xcv:XCV1218 hypothetical protein YP_004147236.1 KEGG: xca:xccb100_3262 hypothetical protein YP_004147237.1 SMART: phosphoesterase PHP domain protein; TIGRFAM: DNA polymerase III, subunit alpha; KEGG: xcv:XCV1226 DNA polymerase III alpha chain protein; PFAM: DNA polymerase III subunit alpha; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type YP_004147238.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: xcb:XC_3149 active site residues; other site YP_004147239.1 KEGG: xca:xccb100_3246 hypothetical protein YP_004147240.1 KEGG: xac:XAC1196 LexA repressor; TIGRFAM: LexA repressor; PFAM: peptidase S24/S26A/S26B, conserved region; LexA DNA-binding domain protein YP_004147241.1 KEGG: tmz:Tmz1t_1959 SMC domain protein YP_004147242.1 KEGG: amd:AMED_2544 lipoprotein YP_004147243.1 PFAM: protein of unknown function DUF892; KEGG: sml:Smlt2532 hypothetical protein YP_004147244.1 KEGG: xca:xccb100_2294 hypothetical protein YP_004147245.1 KEGG: dmo:Dmoj_GI20980 GI20980 gene product from transcript GI20980-RA YP_004147246.1 KEGG: xcb:XC_1852 metallo-beta-lactamase superfamily; region: Lactamase_B; cl00446 YP_004147247.1 PFAM: major facilitator superfamily MFS_1; KEGG: mch:Mchl_3738 major facilitator superfamily MFS_1 YP_004147248.1 KEGG: xca:xccb100_0659 hypothetical protein YP_004147249.1 KEGG: cja:CJA_3309 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_004147250.1 KEGG: psa:PST_2886 sensory box histidine kinase/response regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver YP_004147251.1 PFAM: Circadian clock protein KaiC central region; KEGG: bbt:BBta_2398 hypothetical protein; SMART: ATPase AAA YP_004147252.1 PFAM: Spermine synthase; KEGG: aeh:Mlg_0336 spermine synthase YP_004147253.1 PFAM: protein of unknown function DUF442; KEGG: prw:PsycPRwf_1387 hypothetical protein YP_004147254.1 KEGG: sml:Smlt2703 thioredoxin YP_004147255.1 KEGG: tbd:Tbd_1199 hypothetical protein YP_004147256.1 KEGG: bfa:Bfae_19870 extracellular solute-binding protein, family 3 YP_004147257.1 KEGG: cfl:Cfla_0116 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein YP_004147258.1 KEGG: cef:CE0222 hypothetical protein YP_004147259.1 PFAM: protein of unknown function DUF2058; KEGG: xop:PXO_04343 hypothetical protein YP_004147260.1 KEGG: rpf:Rpic12D_3106 hypothetical protein YP_004147261.1 manually curated; TIGRFAM: DNA mismatch endonuclease Vsr; KEGG: lhk:LHK_03243 DNA mismatch endonuclease; PFAM: DNA mismatch endonuclease vsr YP_004147262.1 KEGG: pvi:Cvib_0077 DNA-cytosine methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase YP_004147263.1 KEGG: cat:CA2559_00250 hypothetical protein YP_004147264.1 KEGG: sco:SCO6054 transmembrane transporter YP_004147265.1 KEGG: hch:HCH_05712 superfamily I DNA/RNA helicase YP_004147266.1 PFAM: protein of unknown function DUF1998; KEGG: hch:HCH_05713 hypothetical protein YP_004147267.1 PFAM: helicase; KEGG: hch:HCH_05715 hypothetical protein YP_004147268.1 KEGG: paa:Paes_1060 NERD domain protein; manually curated; PFAM: NERD domain protein YP_004147269.1 SMART: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; KEGG: xac:XAC1158 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase YP_004147270.1 PFAM: amidohydrolase; KEGG: rmr:Rmar_2366 amidohydrolase 3 YP_004147271.1 TIGRFAM: peroxiredoxin, OsmC subfamily; KEGG: sml:Smlt1165 osmotically inducible protein C; PFAM: OsmC family protein YP_004147272.1 KEGG: alv:Alvin_2184 small GTP-binding protein; TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain IV; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein YP_004147273.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: smt:Smal_2881 protein of unknown function DUF6 transmembrane YP_004147274.1 KEGG: bte:BTH_I1826 N-formylglutamate amidohydrolase; TIGRFAM: N-formylglutamate amidohydrolase; PFAM: N-formylglutamate amidohydrolase YP_004147275.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: xca:xccb100_1582 glutathione reductase YP_004147276.1 PFAM: FAD dependent oxidoreductase; KEGG: xac:XAC2751 D-amino acid dehydrogenase subunit YP_004147277.1 PFAM: patatin; surface antigen variable number repeat-containing protein; KEGG: alv:Alvin_0279 patatin YP_004147278.1 PFAM: protein of unknown function DUF418; KEGG: xal:XALc_2445 predicted membrane protein YP_004147279.1 SMART: phosphoesterase PHP domain protein; TIGRFAM: DNA polymerase III, subunit alpha; KEGG: xal:XALc_2040 probable dna polymerase III, alpha chain protein; PFAM: DNA polymerase III subunit alpha; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type YP_004147280.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pmy:Pmen_2017 LysR family transcriptional regulator YP_004147281.1 PFAM: endoribonuclease L-PSP; KEGG: pag:PLES_07541 translation initiation inhibitor YP_004147282.1 KEGG: xop:PXO_01820 acetyl-CoA carboxylase carboxyltransferase subunit alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, subunit alpha; PFAM: acetyl-CoA carboxylase, subunit alpha, conserved region YP_004147283.1 KEGG: xal:XALc_2452 cell cycle protein; TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; protein of unkown function DUF1946 PP-loop ATpase YP_004147284.1 KEGG: xal:XALc_2453 exonuclease VII small subunit protein; TIGRFAM: exodeoxyribonuclease VII small subunit; PFAM: exonuclease VII small subunit YP_004147285.1 PFAM: polyprenyl synthetase; KEGG: xal:XALc_2454 geranylgeranyl pyrophosphate synthase protein YP_004147286.1 KEGG: pmy:Pmen_4385 hypothetical protein YP_004147287.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: xop:PXO_01893 PmbA YP_004147288.1 PFAM: protein of unknown function DUF615; KEGG: sml:Smlt3470 hypothetical protein YP_004147289.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: smt:Smal_2898 peptidase U62 modulator of DNA gyrase YP_004147290.1 KEGG: xca:xccb100_1555 hypothetical protein YP_004147291.1 KEGG: xca:xccb100_1554 hypothetical protein YP_004147292.1 KEGG: xal:XALc_2460 ribonucleases g and E protein; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/ribonuclease E/G; RNA binding S1 domain protein YP_004147293.1 KEGG: smt:Smal_2901 maf protein; TIGRFAM: maf protein; PFAM: Maf family protein YP_004147294.1 PFAM: protein of unknown function DUF541; KEGG: smt:Smal_2902 protein of unknown function DUF541 YP_004147295.1 PFAM: TonB-dependent receptor plug; Cna B domain protein; KEGG: ilo:IL2339 outer membrane protein YP_004147296.1 KEGG: sml:Smlt3477 TonB domain protein; TIGRFAM: TonB family protein; PFAM: TonB domain YP_004147297.1 PFAM: protein of unknown function DUF163; KEGG: xca:xccb100_1547 rRNA large subunit methyltransferase YP_004147298.1 KEGG: xac:XAC2777 hypothetical protein; TIGRFAM: iojap-like protein; PFAM: Iojap-related protein YP_004147299.1 TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; KEGG: smt:Smal_2909 nicotinic acid mononucleotide adenylyltransferase; PFAM: cytidylyltransferase YP_004147300.1 KEGG: xal:XALc_2478 probable dna polymerase III delta subunit protein; TIGRFAM: DNA polymerase III subunit delta; PFAM: DNA polymerase III delta YP_004147301.1 PFAM: Rare lipoprotein B; KEGG: xal:XALc_2479 rare lipoprotein b family YP_004147302.1 KEGG: sml:Smlt3485 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase YP_004147303.1 KEGG: slt:Slit_1974 hypothetical protein YP_004147304.1 KEGG: smt:Smal_2913 hypothetical protein YP_004147305.1 KEGG: hne:HNE_3074 DNA-binding protein; PFAM: hypothetical protein; SMART: hypothetical protein YP_004147306.1 KEGG: olu:OSTLU_47105 MOP(MATE) family transporter: multidrug efflux YP_004147307.1 KEGG: xal:XALc_2482 thioredoxin domain-containing protein; TIGRFAM: thioredoxin; PFAM: thioredoxin domain-containing protein YP_004147308.1 KEGG: cti:RALTA_A1772 response regulator; LytTr family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver YP_004147309.1 KEGG: cvi:CV_1419 transmembrane sensor histidine kinase transcription regulator protein; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_004147310.1 PFAM: beta-lactamase; KEGG: ccs:CCNA_03603 beta-lactamase family protein YP_004147311.1 KEGG: pap:PSPA7_5839 N-formimino-L-glutamate deiminase; TIGRFAM: formiminoglutamate deiminase; PFAM: amidohydrolase YP_004147312.1 TIGRFAM: imidazolonepropionase; KEGG: azl:AZL_c00090 imidazolonepropionase; PFAM: amidohydrolase YP_004147313.1 KEGG: smt:Smal_1216 hypothetical protein YP_004147314.1 KEGG: smt:Smal_1215 hypothetical protein YP_004147315.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sml:Smlt1446 outer membrane protein YP_004147316.1 KEGG: xca:xccb100_1501 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_004147317.1 PFAM: major facilitator superfamily MFS_1; KEGG: xca:xccb100_1500 major facilitator superfamily (MFS) transporter YP_004147318.1 PFAM: ferric-uptake regulator; KEGG: xca:xccb100_1476 transcriptional regulator, Fur family YP_004147319.1 KEGG: smt:Smal_1209 glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain YP_004147320.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cja:CJA_3459 GGDEF domain protein; SMART: GGDEF domain containing protein YP_004147321.1 KEGG: sml:Smlt0971 UDP-2,3-diacylglucosamine hydrolase; TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase YP_004147322.1 PFAM: protein of unknown function DUF455; KEGG: xca:xccb100_3398 hypothetical protein YP_004147323.1 KEGG: xom:XOO_3472 amidophosphoribosyltransferase; TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase YP_004147324.1 PFAM: colicin V production protein; KEGG: xcb:XC_3283 colicin V production protein; region: colicin_V; cl00567 YP_004147325.1 PFAM: sporulation domain-containing protein; KEGG: smt:Smal_0810 sporulation domain protein YP_004147326.1 KEGG: xal:XALc_0564 probable FolC bifunctional protein [includes folylpolyglutamate synthase and dihydrofolate synthase]; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_004147327.1 PFAM: phosphoglycerate mutase; KEGG: xal:XALc_0563 phosphoglycerate mutase protein YP_004147328.1 PFAM: peptidase S46; KEGG: sml:Smlt0962 hypothetical protein YP_004147329.1 KEGG: smt:Smal_0806 L-threonine 3-dehydrogenase; TIGRFAM: L-threonine 3-dehydrogenase; PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein YP_004147330.1 PFAM: Conserved hypothetical protein CHP02001; KEGG: sml:Smlt0960 hypothetical protein YP_004147331.1 TIGRFAM: sulfate ABC transporter ATPase; PFAM: ABC transporter; transport-associated OB domain-containing protein; KEGG: xcv:XCV1050 sulfate ABC transporter ATP-binding protein; SMART: ATPase AAA YP_004147332.1 KEGG: xca:xccb100_3411 ABC-type sulfate importer, permease subunit; TIGRFAM: sulfate ABC transporter inner membrane subunit CysW; sulfate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component YP_004147333.1 KEGG: xca:xccb100_3412 ABC-type sulfate importer, permease subunit; TIGRFAM: sulfate ABC transporter inner membrane subunit CysT; sulfate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component YP_004147334.1 KEGG: xac:XAC1017 ABC transporter sulfate-binding protein; TIGRFAM: sulfate ABC transporter periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1 YP_004147335.1 PFAM: phosphate-selective porin O and P; KEGG: mei:Msip34_2149 phosphate-selective porin O and P YP_004147336.1 TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; KEGG: xca:xccb100_3414 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: aminotransferase class I and II YP_004147337.1 KEGG: smt:Smal_0801 hypothetical protein YP_004147338.1 KEGG: sml:Smlt0957 RNA pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_004147339.1 KEGG: smt:Smal_0801 hypothetical protein YP_004147340.1 PFAM: OmpA/MotB domain protein; KEGG: sml:Smlt0955 outer membrane protein YP_004147341.1 KEGG: xal:XALc_0556 oxidoreductase protein; TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein YP_004147342.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: smt:Smal_0797 NADH:flavin oxidoreductase/NADH oxidase YP_004147343.1 PFAM: cell wall hydrolase SleB; KEGG: xca:xccb100_3424 hypothetical protein YP_004147344.1 PFAM: glutathione S-transferase domain; KEGG: sml:Smlt0950 glutathione S-transferase YP_004147345.1 KEGG: smt:Smal_0793 hypothetical protein YP_004147346.1 TIGRFAM: 2-methylcitrate synthase/citrate synthase II; KEGG: xca:xccb100_3313 methylcitrate synthase; PFAM: citrate synthase YP_004147347.1 KEGG: smt:Smal_3030 2-methylisocitrate lyase; TIGRFAM: methylisocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase YP_004147348.1 PFAM: citrate synthase; regulatory protein MerR; KEGG: bph:Bphy_0550 citrate synthase YP_004147349.1 KEGG: xcv:XCV1324 two-component system sensor histidine kinase-response regulator hybridprotein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein YP_004147350.1 KEGG: xcb:XC_3068 G-X-G motif; other site; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_004147351.1 PFAM: stage II sporulation protein E; KEGG: xcb:XC_3069 serine/threonine phosphatases, family 2C, catalytic domain; the protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence...; region: PP2Cc; cl00120 YP_004147352.1 KEGG: xca:xccb100_3165 sigma-B negative effector; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_004147353.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: pfo:Pfl01_3134 anti-sigma-factor antagonist (STAS) YP_004147354.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: xcv:XCV1319 sigma-B regulator YP_004147355.1 PFAM: glycoside hydrolase family 43; KEGG: zpr:ZPR_2143 glycosyl hydrolase family protein YP_004147356.1 KEGG: rsl:RPSI07_mp0130 conserved hypothethical protein YP_004147357.1 KEGG: xca:xccb100_4036 hypothetical protein YP_004147358.1 KEGG: hch:HCH_02039 hypothetical protein YP_004147359.1 KEGG: amc:MADE_03763 hypothetical protein YP_004147360.1 PFAM: cupin; KEGG: pca:Pcar_2292 hypothetical protein YP_004147362.1 KEGG: avn:Avin_25090 major facilitator superfamily transporter YP_004147363.1 manually curated; KEGG: geo:Geob_2985 hypothetical protein YP_004147364.1 KEGG: nve:NEMVE_v1g86324 hypothetical protein YP_004147365.1 KEGG: smt:Smal_1964 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase YP_004147366.1 KEGG: sml:Smlt0947 propionyl-CoA synthetase; TIGRFAM: propionate/CoA ligase; PFAM: AMP-dependent synthetase and ligase YP_004147367.1 KEGG: xal:XALc_0547 hypothetical protein YP_004147368.1 KEGG: sml:Smlt0944 malate dehydrogenase; TIGRFAM: malate dehydrogenase; PFAM: lactate/malate dehydrogenase YP_004147369.1 PFAM: glutaredoxin; KEGG: pmy:Pmen_3551 glutaredoxin YP_004147370.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: xal:XALc_0545 peptidyl-prolyl cis-trans isomerase protein YP_004147371.1 KEGG: xal:XALc_0544 probable gtp-binding elongation factor protein; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein YP_004147372.1 PFAM: MscS Mechanosensitive ion channel; KEGG: xcv:XCV1029 small-conductance mechanosensitive channel YP_004147373.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: xcb:XC_3313 class-II DAHP synthetase family; region: DAHP_synth_2; cl03230; PFAM: DAHP synthetase class II YP_004147374.1 PFAM: disulfide bond formation protein DsbB; KEGG: xop:PXO_02553 disulfide bond formation protein B YP_004147375.1 KEGG: sml:Smlt0933 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17 YP_004147376.1 TIGRFAM: DNA-directed RNA polymerase subunit alpha; PFAM: RNA polymerase insert; RNA polymerase dimerisation; RNA polymerase alpha subunit domain protein; KEGG: sml:Smlt0931 DNA-directed RNA polymerase subunit alpha; SMART: RNA polymerase RpoA/D/Rpb3-type YP_004147377.1 TIGRFAM: ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: xac:XAC0995 30S ribosomal protein S4; SMART: RNA-binding S4 domain protein YP_004147378.1 KEGG: xal:XALc_0536 probable 30s ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; PFAM: ribosomal protein S11 YP_004147379.1 KEGG: smt:Smal_0777 30S ribosomal protein S13; TIGRFAM: 30S ribosomal protein S13; PFAM: ribosomal protein S13 YP_004147380.1 KEGG: smt:Smal_0776 preprotein translocase subunit SecY; TIGRFAM: preprotein translocase subunit SecY; PFAM: SecY protein YP_004147381.1 TIGRFAM: ribosomal protein L15; KEGG: xac:XAC0991 50S ribosomal protein L15 YP_004147382.1 TIGRFAM: ribosomal protein L30; KEGG: smt:Smal_0774 50S ribosomal protein L30 YP_004147383.1 KEGG: xal:XALc_0531 probable 30s ribosomal protein S5; TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; ribosomal protein S5 YP_004147384.1 KEGG: xom:XOO_3371 50S ribosomal protein L18; TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E YP_004147385.1 KEGG: xac:XAC0987 50S ribosomal protein L6; TIGRFAM: ribosomal protein L6; PFAM: ribosomal protein L6, alpha-beta domain YP_004147386.1 PFAM: ribosomal protein S8; KEGG: xac:XAC0986 30S ribosomal protein S8 YP_004147387.1 PFAM: ribosomal protein S14; KEGG: sml:Smlt0919 30S ribosomal protein S14 YP_004147388.1 KEGG: xal:XALc_0526 probable 50s ribosomal protein L5 YP_004147389.1 TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; KEGG: xal:XALc_0525 probable 50s ribosomal protein L24; SMART: KOW domain protein YP_004147390.1 KEGG: xac:XAC0982 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e YP_004147391.1 KEGG: xop:PXO_04512 30S ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; PFAM: ribosomal protein S17 YP_004147392.1 KEGG: xop:PXO_04513 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29 YP_004147393.1 KEGG: sml:Smlt0913 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: ribosomal protein L10e/L16 YP_004147394.1 TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; ribosomal protein S3 domain; KH type 2 domain protein; KEGG: xac:XAC0978 30S ribosomal protein S3; SMART: KH domain protein YP_004147395.1 KEGG: smt:Smal_0761 50S ribosomal protein L22; TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17 YP_004147396.1 KEGG: xal:XALc_0518 probable 30s ribosomal protein S19; TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15 YP_004147397.1 KEGG: xal:XALc_0517 probable 50s ribosomal protein L2; TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2 YP_004147398.1 PFAM: ribosomal protein L25/L23; KEGG: smt:Smal_0758 50S ribosomal protein L23 YP_004147399.1 PFAM: ribosomal protein L4/L1e; KEGG: xca:xccb100_3458 50S ribosomal protein L4 YP_004147400.1 KEGG: smt:Smal_0756 50S ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: ribosomal protein L3 YP_004147401.1 KEGG: xca:xccb100_3460 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10 YP_004147402.1 KEGG: xac:XAC0970 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein YP_004147403.1 KEGG: sml:Smlt0903 elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein YP_004147404.1 KEGG: xac:XAC0968 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7 YP_004147405.1 KEGG: xcb:XC_3345 aminoacyl-tRNA interaction site (A-site); other site; TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23 YP_004147406.1 TIGRFAM: DNA-directed RNA polymerase subunit beta'; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase subunit alpha; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; RNA polymerase Rpb1 domain 5; KEGG: sml:Smlt0899 DNA-directed RNA polymerase subunit beta'; SMART: RNA polymerase I subunit A domain protein YP_004147407.1 KEGG: sml:Smlt0898 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase subunit beta; RNA polymerase Rpb2 domain 2; DNA-directed RNA polymerase subunit beta, external 1 domain; RNA polymerase Rpb2 domain 7 YP_004147408.1 KEGG: sml:Smlt0897 50S ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12 YP_004147409.1 PFAM: ribosomal protein L10; KEGG: xal:XALc_0505 probable 50s ribosomal protein L10 YP_004147410.1 KEGG: sml:Smlt0895 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1 YP_004147411.1 TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11-like; KEGG: smt:Smal_0745 50S ribosomal protein L11; SMART: ribosomal protein L11 YP_004147412.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain-containing protein; KOW domain protein; KEGG: xal:XALc_0502 probable transcription antitermination protein NusG; SMART: NGN domain-containing protein; KOW domain protein YP_004147413.1 KEGG: xal:XALc_0501 preprotein translocase subunit SecE; TIGRFAM: preprotein translocase subunit SecE; PFAM: protein secE/sec61-gamma protein YP_004147414.1 KEGG: xac:XAC0970 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein YP_004147415.1 KEGG: sml:Smlt0878 GTP-dependent nucleic acid-binding protein EngD; TIGRFAM: GTP-binding protein YchF; PFAM: protein of unknown function DUF933; GTP-binding protein HSR1-related YP_004147416.1 TIGRFAM: peptidyl-tRNA hydrolase; KEGG: xcb:XC_3356 catalytic residue; other site; PFAM: peptidyl-tRNA hydrolase YP_004147417.1 KEGG: xca:xccb100_3476 50S ribosomal protein L25/general stress protein Ctc; TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25-like YP_004147418.1 TIGRFAM: ribose-phosphate pyrophosphokinase; KEGG: xal:XALc_0492 probable ribose-phosphate diphosphokinase protein; PFAM: phosphoribosyltransferase YP_004147419.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: xal:XALc_0490 probable 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase protein; PFAM: GHMP kinase; GHMP kinase domain protein YP_004147420.1 KEGG: sml:Smlt0873 outer membrane lipoprotein LolB; TIGRFAM: outer membrane lipoprotein LolB; PFAM: outer membrane lipoprotein LolB YP_004147421.1 PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: xal:XALc_0488 hypothetical protein YP_004147422.1 KEGG: xop:PXO_04547 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; shikimate/quinate 5-dehydrogenase YP_004147423.1 KEGG: smt:Smal_0721 peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: class I peptide chain release factor; PCRF domain protein YP_004147424.1 KEGG: xal:XALc_0483 probable molybdenum cofactor biosynthesis protein B; TIGRFAM: molybdenum cofactor biosynthesis protein B; molybdenum cofactor synthesis protein; PFAM: molybdopterin binding domain YP_004147425.1 PFAM: acylphosphatase; KEGG: tgr:Tgr7_2243 acylphosphatase YP_004147426.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: xca:xccb100_3489 thioredoxin YP_004147427.1 KEGG: sml:Smlt0865 ribonuclease BN/unknown domain fusion protein; TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN YP_004147428.1 KEGG: xal:XALc_0479 probable flavoprotein WrbA (trp repressor binding protein); TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase YP_004147429.1 KEGG: smt:Smal_0714 hypothetical protein YP_004147430.1 PFAM: asparaginase/glutaminase; KEGG: sml:Smlt0862 asparaginase YP_004147431.1 KEGG: xca:xccb100_3495 hypothetical protein; TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region YP_004147432.1 KEGG: xom:XOO_3426 hypothetical protein; TIGRFAM: FeS assembly SUF system protein SufT; PFAM: protein of unknown function DUF59 YP_004147433.1 KEGG: xcb:XC_3382 hypothetical protein YP_004147434.1 KEGG: xcv:XCV0955 NAD(P) transhydrogenase beta subunit; PFAM: NAD(P) transhydrogenase subunit beta YP_004147435.1 KEGG: scl:sce4822 hypothetical protein YP_004147436.1 KEGG: xop:PXO_04571 pyridine nucleotide transhydrogenase subunit alpha YP_004147437.1 manually curated; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: xac:XAC0922 RNA polymerase factor sigma-70; PFAM: Sigma-70 region 4 type 2 YP_004147438.1 KEGG: smt:Smal_0702 hypothetical protein YP_004147439.1 KEGG: smt:Smal_0701 hypothetical protein YP_004147440.1 KEGG: xal:XALc_0468 nad(p) transhydrogenase subunit alpha protein; PFAM: alanine dehydrogenase/PNT domain protein YP_004147441.1 PFAM: protein of unknown function DUF1631; KEGG: sml:Smlt0851 hypothetical protein YP_004147442.1 PFAM: nitroreductase; KEGG: xca:xccb100_3511 nitroreductase family protein YP_004147443.1 KEGG: xca:xccb100_3512 exodeoxyribonuclease IX; PFAM: 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2 YP_004147444.1 PFAM: NUDIX hydrolase; KEGG: smt:Smal_0696 NUDIX hydrolase YP_004147445.1 PFAM: N-formylglutamate amidohydrolase; KEGG: xca:xccb100_3514 hypothetical protein YP_004147446.1 PFAM: protein of unknown function DUF2242; KEGG: xal:XALc_0822 hypothetical protein YP_004147447.1 KEGG: sml:Smlt0843 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold YP_004147448.1 KEGG: smt:Smal_0690 protein-(glutamine-N5) methyltransferase, release factor-specific; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: methyltransferase small YP_004147449.1 TIGRFAM: peroxiredoxin; KEGG: xac:XAC0907 alkyl hydroperoxide reductase subunit C; PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; peroxiredoxin-like YP_004147450.1 KEGG: xcv:XCV0942 alkyl hydroperoxide reductase subunit F; TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutaredoxin YP_004147451.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: xca:xccb100_3519 oxidative stress transcriptional regulator, LysR family YP_004147452.1 PFAM: transcription elongation factor GreA/GreB domain-containing protein; KEGG: xcv:XCV0940 regulator of nucleoside diphosphate kinase YP_004147453.1 KEGG: xcb:XC_1227 active site; other site; TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase YP_004147454.1 PFAM: NUDIX hydrolase; KEGG: smt:Smal_3080 ADP-ribose diphosphatase NudE YP_004147455.1 KEGG: xcv:XCV3202 adenosylmethionine--8-amino-7-oxononanoate transaminase; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III YP_004147456.1 PFAM: protein of unknown function DUF558; KEGG: smt:Smal_3082 16S ribosomal RNA methyltransferase RsmE YP_004147457.1 KEGG: xca:xccb100_1235 chemotaxis-related protein; PFAM: CheW domain protein; SMART: CheW domain protein YP_004147458.1 KEGG: xal:XALc_2237 chemotaxis-related protein YP_004147459.1 KEGG: sml:Smlt3670 gliding motility sensor histidine kinase response regulator fusion transcriptional regulatory protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; CheW domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; Hpt domain protein; CheW domain protein YP_004147460.1 KEGG: xca:xccb100_1232 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_004147461.1 KEGG: xca:xccb100_1231 chemotaxis signal transduction protein; PFAM: CheW domain protein; SMART: CheW domain protein YP_004147462.1 KEGG: xal:XALc_2241 probable type IV pilus response regulatory protein PilH; PFAM: response regulator receiver; SMART: response regulator receiver YP_004147463.1 KEGG: smt:Smal_3089 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_004147464.1 TIGRFAM: glutathione synthetase; KEGG: xal:XALc_2243 glutathione synthetase protein; PFAM: glutathione synthetase ATP-binding; glutathione synthetase domain protein YP_004147465.1 KEGG: xcb:XC_1181 gram-negative bacterial TonB protein; region: TonB; cl10048; TIGRFAM: TonB family protein; PFAM: TonB domain YP_004147466.1 PFAM: fructose-bisphosphate aldolase class-I; KEGG: smt:Smal_3213 fructose-bisphosphate aldolase YP_004147467.1 TIGRFAM: pyruvate kinase; KEGG: xal:XALc_2303 pyruvate kinase protein; PFAM: pyruvate kinase barrel; pyruvate kinase alpha/beta YP_004147468.1 PFAM: transaldolase; KEGG: sml:Smlt0837 transaldolase B YP_004147469.1 TIGRFAM: peptide methionine sulfoxide reductase; KEGG: xca:xccb100_3524 methionine sulfoxide reductase A; PFAM: methionine sulfoxide reductase A YP_004147470.1 KEGG: smt:Smal_0683 hypothetical protein YP_004147471.1 KEGG: xal:XALc_0453 probable glutaminyl-tRNA synthetase (glutamine--tRNA ligase)(GlnRs) protein; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain YP_004147472.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: xca:xccb100_3533 integral membrane protein YP_004147473.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: xca:xccb100_3536 hypothetical protein YP_004147474.1 KEGG: xca:xccb100_3537 RNA 2'-O-ribose methyltransferase YP_004147475.1 KEGG: xac:XAC3515 cellulose synthase subunit C; PFAM: cellulose synthase operon C domain protein; Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat YP_004147476.1 KEGG: xac:XAC3516 endo-1,4-D-glucanase; PFAM: glycoside hydrolase family 8 YP_004147477.1 PFAM: cellulose synthase BcsB; KEGG: xac:XAC3517 cellulose synthase regulator protein YP_004147478.1 KEGG: xac:XAC3518 celullose synthase; TIGRFAM: cellulose synthase catalytic subunit (UDP-forming); PFAM: glycosyl transferase family 2; type IV pilus assembly PilZ YP_004147479.1 KEGG: mmu:100042292 predicted gene 3773 YP_004147480.1 KEGG: xcv:XCV3646 hypothetical protein YP_004147481.1 KEGG: xfa:XF1097 nicotinate phosphoribosyltransferase; TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like YP_004147482.1 PFAM: glycosyl transferase family 2; KEGG: xca:xccb100_3679 glycosyltransferase YP_004147483.1 KEGG: xca:xccb100_3684 hypothetical protein YP_004147484.1 TIGRFAM: phosphoribosylformylglycinamidine synthase; KEGG: sml:Smlt0684 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein YP_004147485.1 PFAM: disulfide bond isomerase, DsbC/G-like; KEGG: xca:xccb100_3699 protein disulfide isomerase YP_004147486.1 KEGG: xca:xccb100_3700 site-specific tyrosine recombinase XerD; TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase YP_004147487.1 PFAM: RDD domain containing protein; KEGG: xal:XALc_2670 hypothetical protein YP_004147488.1 PFAM: permease YjgP/YjgQ family protein; KEGG: xal:XALc_2671 yjgp/yjgq family permease YP_004147489.1 PFAM: permease YjgP/YjgQ family protein; KEGG: xal:XALc_2672 yjgp/yjgq family permease YP_004147490.1 KEGG: smt:Smal_0536 leucyl aminopeptidase; PFAM: peptidase M17 leucyl aminopeptidase domain protein YP_004147491.1 PFAM: DNA polymerase III subunit chi; KEGG: xfn:XfasM23_0096 DNA polymerase III subunit chi YP_004147492.1 TIGRFAM: valyl-tRNA synthetase; KEGG: xcv:XCV3684 valyl-tRNA synthetase YP_004147493.1 KEGG: sml:Smlt0671 ribosomal-protein-alanine acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase YP_004147494.1 KEGG: sml:Smlt0670 hypothetical protein YP_004147495.1 KEGG: sml:Smlt0669 transmembrane CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_004147496.1 KEGG: smt:Smal_0528 hypothetical protein YP_004147497.1 TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; anticodon-binding domain protein YP_004147498.1 KEGG: sml:Smlt0664 H-NS histone family trans-acting regulatory protein; PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS YP_004147499.1 PFAM: protein of unknown function DUF1212; KEGG: xca:xccb100_3718 hypothetical protein YP_004147500.1 PFAM: protein of unknown function DUF140; KEGG: xal:XALc_2683 probable abc transporter permease YP_004147501.1 KEGG: smt:Smal_0523 ABC transporter; PFAM: ABC transporter related; SMART: ATPase AAA YP_004147502.1 PFAM: hypothetical protein; KEGG: xcv:XCV3697 ABC transporter substrate-binding protein YP_004147503.1 PFAM: protein of unknown function DUF330; KEGG: xca:xccb100_3722 hypothetical protein YP_004147504.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: xac:XAC3574 DNA repair system specific for alkylated DNA YP_004147505.1 KEGG: xca:xccb100_3725 flavoprotein-ubiquinone oxidoreductase; PFAM: electron transfer flavoprotein-ubiquinone oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004147506.1 TIGRFAM: 3-oxoacid CoA-transferase subunit beta; KEGG: sml:Smlt0656 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B; PFAM: coenzyme A transferase YP_004147507.1 TIGRFAM: 3-oxoacid CoA-transferase, subunit alpha; KEGG: xal:XALc_2691 probable succinyl-coa:3-ketoacid-coenzyme a transferase subunit a protein; PFAM: coenzyme A transferase YP_004147508.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; KEGG: sml:Smlt0653 phosphohexose mutase YP_004147509.1 TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: sml:Smlt0652 xanthan biosynthesis protein; PFAM: mannose-6-phosphate isomerase type II; nucleotidyl transferase YP_004147510.1 TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: xal:XALc_2694 probable dTDP-4-dehydrorhamnose reductase protein; PFAM: dTDP-4-dehydrorhamnose reductase YP_004147511.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; KEGG: sml:Smlt0649 dTDP-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_004147512.1 KEGG: xal:XALc_2696 probable glucose-1-phosphate thymidylyltransferase protein; TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase YP_004147513.1 KEGG: xal:XALc_2697 probable dTDP-glucose 4,6-dehydratase protein; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004147514.1 PFAM: electron transfer flavoprotein alpha/beta-subunit; KEGG: smt:Smal_0502 electron transfer flavoprotein alpha/beta-subunit YP_004147515.1 PFAM: electron transfer flavoprotein subunit alpha ; electron transfer flavoprotein alpha/beta-subunit; KEGG: xal:XALc_2699 probable electron transfer flavoprotein subunit alpha YP_004147516.1 PFAM: methyltransferase type 12; KEGG: sus:acid_0623 FkbM family methyltransferase YP_004147517.1 KEGG: cyt:cce_4549 ATP-binding protein of ABC transporter; PFAM: ABC transporter; SMART: ATPase AAA YP_004147518.1 PFAM: ABC transporter; KEGG: cyp:PCC8801_3884 ABC-2 type transporter YP_004147519.1 PFAM: capsule polysaccharide biosynthesis protein; KEGG: rru:Rru_A1650 hypothetical protein YP_004147520.1 KEGG: cyn:Cyan7425_4206 glycosyl transferase family 8 YP_004147521.1 PFAM: glycosyl transferase family 2; KEGG: rru:Rru_A2733 glycosyl transferase YP_004147522.1 KEGG: pca:Pcar_2591 hypothetical protein YP_004147523.1 KEGG: lch:Lcho_0970 hypothetical protein YP_004147524.1 KEGG: bpy:Bphyt_6260 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA YP_004147525.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: sml:Smlt0617 cystathionine beta/gamma-lyase YP_004147526.1 KEGG: smt:Smal_0488 pyridoxal-5'-phosphate-dependent protein subunit beta; PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; CBS domain containing protein; SMART: CBS domain containing protein YP_004147527.1 PFAM: protein of unknown function DUF465; KEGG: xcb:XC_3637 protein of unknown function (DUF465); region: DUF465; cl01070 YP_004147528.1 PFAM: OmpA/MotB domain protein; KEGG: xal:XALc_2715 hypothetical protein YP_004147529.1 KEGG: xca:xccb100_3756 outer membrane protein YP_004147530.1 KEGG: smt:Smal_0483 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E YP_004147531.1 KEGG: xal:XALc_2718 probable maleylacetoacetate isomerase protein; TIGRFAM: maleylacetoacetate isomerase; PFAM: glutathione S-transferase domain YP_004147532.1 PFAM: fumarylacetoacetate hydrolase; KEGG: smt:Smal_0481 fumarylacetoacetate hydrolase YP_004147533.1 KEGG: xcv:XCV3733 ATP-dependent RNA helicase; PFAM: DEAD/DEAH box helicase; helicase; SMART: DEAD-like helicase ; helicase YP_004147534.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: xal:XALc_2721 probable 6-pyruvoyltetrahydropterin synthase protein YP_004147535.1 KEGG: xal:XALc_2722 hypothetical protein YP_004147536.1 TIGRFAM: dethiobiotin synthase; KEGG: xal:XALc_2723 probable dethiobiotin synthase protein YP_004147537.1 KEGG: xop:PXO_03142 sensor with GAF domain; PFAM: GAF domain protein; SMART: GAF domain protein YP_004147538.1 KEGG: xal:XALc_2726 TonB-dependent outer membrane receptor protein; TIGRFAM: TonB-dependent vitamin B12 receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor YP_004147539.1 PFAM: protein of unknown function DUF885; KEGG: xca:xccb100_4236 hypothetical protein YP_004147540.1 KEGG: smt:Smal_0455 DNA polymerase IV; PFAM: UMUC domain protein DNA-repair protein YP_004147541.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; KEGG: xca:xccb100_3768 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ YP_004147542.1 PFAM: beta-ketoacyl synthase; KEGG: sml:Smlt0576 3-oxoacyl-[acyl-carrier-protein] synthase I YP_004147543.1 PFAM: amidohydrolase; KEGG: swi:Swit_1105 amidohydrolase YP_004147544.1 KEGG: xcv:XCV3744 oligopeptidase A; PFAM: peptidase M3A and M3B thimet/oligopeptidase F YP_004147545.1 PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: xca:xccb100_3772 cysteine synthase YP_004147546.1 KEGG: xop:PXO_03127 hypothetical protein YP_004147547.1 KEGG: cja:CJA_1538 hypothetical protein YP_004147548.1 KEGG: cja:CJA_1539 hypothetical protein YP_004147549.1 KEGG: rcu:RCOM_1946820 hypothetical protein YP_004147550.1 TIGRFAM: 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; KEGG: xfa:XF2272 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; PFAM: methionine synthase vitamin-B12 independent; Cobalamin-independent synthase MetE domain protein YP_004147551.1 KEGG: sml:Smlt4099 glucosamine--fructose-6-phosphate aminotransferase; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS) YP_004147552.1 KEGG: smt:Smal_3500 efflux transporter RND family, MFP subunit; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: hemolysin D family protein YP_004147553.1 KEGG: xcv:XCV3756 ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA YP_004147554.1 PFAM: protein of unknown function DUF214; KEGG: xcv:XCV3757 ABC transporter permease YP_004147555.1 PFAM: protein of unknown function DUF214; KEGG: xcv:XCV3758 ABC transporter permease YP_004147556.1 KEGG: bgl:bglu_1g09730 excinuclease ABC subunit C YP_004147557.1 KEGG: xcv:XCV3760 two-component system regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA YP_004147558.1 KEGG: sml:Smlt4106 two component system sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein YP_004147559.1 KEGG: smt:Smal_3507 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase YP_004147560.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; KEGG: xal:XALc_2902 probable bifunctional protein GlmU [includes: udp-N-acetylglucosamine pyrophosphorylase and glucosamine-1-phosphate N-acetyltransferase); PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase YP_004147561.1 KEGG: xop:PXO_03116 hypothetical protein YP_004147562.1 KEGG: xac:XAC0478 anthranilate synthase component II; TIGRFAM: glutamine amidotransferase; PFAM: glutamine amidotransferase class-I YP_004147563.1 PFAM: protein of unknown function DUF541; KEGG: smt:Smal_3721 protein of unknown function DUF541 YP_004147564.1 TIGRFAM: anthranilate synthase component I; KEGG: sml:Smlt4313 anthranilate synthase component I; PFAM: chorismate binding-like; anthranilate synthase component I domain protein YP_004147565.1 KEGG: sml:Smlt4314 lipid kinase; PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase YP_004147566.1 TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: xac:XAC0472 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase YP_004147567.1 KEGG: smt:Smal_3726 heat shock protein DnaJ; PFAM: heat shock protein DnaJ; SMART: heat shock protein DnaJ YP_004147568.1 TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: sml:Smlt4318 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase YP_004147569.1 KEGG: xca:xccb100_0482 hypothetical protein YP_004147570.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; Na+/H+ antiporter Mnhsubunit beta-related protein; KEGG: sml:Smlt4320 monovalent cation/H+ antiporter subunit A YP_004147571.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: smt:Smal_3730 monovalent cation/H+ antiporter subunit C YP_004147572.1 KEGG: xcv:XCV0490 monovalent cation/H+ antiporter subunit D; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_004147573.1 PFAM: cation antiporter; KEGG: xac:XAC0459 monovalent cation/H+ antiporter subunit E YP_004147574.1 PFAM: multiple resistance and pH regulation protein F; KEGG: xca:xccb100_0476 monovalent cation/H+ antiporter subunit F YP_004147575.1 KEGG: xal:XALc_0266 hypothetical protein; TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit YP_004147576.1 KEGG: sml:Smlt4326 transmembrane sodium/calcium exchanger protein; TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region YP_004147577.1 KEGG: xcb:XC_0453 hypothetical protein YP_004147578.1 TIGRFAM: homogentisate 1,2-dioxygenase; KEGG: sml:Smlt4329 homogentisate 1,2-dioxygenase; PFAM: homogentisate 12-dioxygenase YP_004147579.1 TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; KEGG: xca:xccb100_0470 4-hydroxyphenylpyruvate dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase YP_004147580.1 KEGG: smt:Smal_3740 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_004147581.1 KEGG: xac:XAC0450 hypothetical protein YP_004147582.1 KEGG: sml:Smlt4335 peptide transport protein; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region YP_004147583.1 PFAM: tryptophan 23-dioxygenase; KEGG: xac:XAC0448 tryptophan 2,3-dioxygenase YP_004147584.1 TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, subunit alpha; KEGG: xca:xccb100_0464 pyruvate dehydrogenase E1 component subunit alpha; PFAM: dehydrogenase E1 component YP_004147585.1 PFAM: transketolase; transketolase domain-containing protein; KEGG: xcv:XCV0475 pyruvate dehydrogenase E1 component YP_004147586.1 PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: sml:Smlt4341 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_004147587.1 KEGG: cyn:Cyan7425_5220 hypothetical protein YP_004147588.1 KEGG: smt:Smal_0244 beta-lactamase YP_004147589.1 KEGG: smt:Smal_0243 hypothetical protein YP_004147590.1 TIGRFAM: tryptophanyl-tRNA synthetase; KEGG: tmz:Tmz1t_0620 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib YP_004147591.1 PFAM: CsbD family protein; KEGG: smt:Smal_0240 CsbD family protein YP_004147592.1 PFAM: entericidin EcnAB; KEGG: xal:XALc_0255 entericidin ecnab precursor protein YP_004147593.1 KEGG: xcv:XCV4102 arginase; TIGRFAM: arginase; PFAM: arginase/agmatinase/formiminoglutamase YP_004147594.1 KEGG: pst:PSPTO_2254 methyl-accepting chemotaxis protein YP_004147595.1 PFAM: sporulation domain-containing protein; KEGG: sml:Smlt0284 hypothetical protein YP_004147596.1 KEGG: smt:Smal_0234 pantothenate kinase; TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor YP_004147597.1 TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; KEGG: xal:XALc_0251 probable biotin--[acetyl-coa-carboxylase] ligase protein; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein YP_004147598.1 KEGG: xcv:XCV4111 hypothetical protein YP_004147599.1 KEGG: smt:Smal_0231 protein of unknown function DUF980; manually curated; PFAM: protein of unknown function DUF980 YP_004147600.1 PFAM: transposase IS4 family protein; KEGG: bpl:BURPS1106A_3889 transposase, IS4 YP_004147601.1 manually curated; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: xac:XAC4022 two-component system sensor protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_004147602.1 KEGG: xal:XALc_0245 probable two-component system regulatory protein PhoP; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_004147603.1 KEGG: smt:Smal_0228 hypothetical protein YP_004147604.1 KEGG: xal:XALc_0243 probable tRNA-dihydrouridine synthase A protein; TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS YP_004147605.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sml:Smlt2099 TonB dependent receptor protein YP_004147606.1 KEGG: swi:Swit_3582 peptidase M19, renal dipeptidase; PFAM: peptidase M19 renal dipeptidase YP_004147607.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: cpi:Cpin_0352 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004147608.1 KEGG: xcv:XCV3969 hypothetical protein YP_004147609.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: xcv:XCV3971 HAD family phosphatase YP_004147610.1 PFAM: EF-Hand, Calmodulin; KEGG: xac:XAC3856 hypothetical protein YP_004147611.1 KEGG: smt:Smal_0345 hypothetical protein YP_004147612.1 KEGG: plt:Plut_1352 hypothetical protein YP_004147613.1 KEGG: smt:Smal_0344 peptidase M15D VanX D-ala-D-ala dipeptidase; PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase YP_004147614.1 PFAM: beta-lactamase; KEGG: sml:Smlt0462 penicillin-binding protein 4 (pbp-4) YP_004147615.1 PFAM: TonB-dependent receptor plug; KEGG: sml:Smlt0461 TonB outer membrane protein oar family precursor YP_004147616.1 KEGG: sml:Smlt0460 transglutaminase; PFAM: transglutaminase; SMART: transglutaminase YP_004147617.1 PFAM: NLP/P60 protein; KEGG: smt:Smal_0340 NLP/P60 protein YP_004147618.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: sml:Smlt0458 chloromuconate cycloisomerase YP_004147619.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: smt:Smal_0338 RpiR family transcriptional regulator YP_004147620.1 KEGG: xcb:XC_3880 uncharacterized protein conserved in bacteria [function unknown]; region: COG3786; COG3786 YP_004147621.1 PFAM: sodium:dicarboxylate symporter; KEGG: pzu:PHZ_c0799 sodium:dicarboxylate symporter YP_004147622.1 KEGG: xcb:XC_3882 hypothetical protein YP_004147623.1 KEGG: xac:XAC3866 hypothetical protein YP_004147624.1 PFAM: glycoside hydrolase; KEGG: xal:XALc_0419 probable beta-glucosidase protein YP_004147625.1 KEGG: sml:Smlt4040 phospholipid membrane-attached protein; PFAM: transport-associated; SMART: transport-associated and nodulation region YP_004147626.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: cse:Cseg_1569 oxidoreductase domain-containing protein YP_004147627.1 KEGG: xca:xccb100_0757 6-phosphogluconate dehydrogenase-like protein; TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase domain-containing protein YP_004147628.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: xal:XALc_2745 hypothetical protein; SMART: GGDEF domain containing protein YP_004147629.1 KEGG: nmu:Nmul_A1285 cupin region; manually curated; PFAM: cupin YP_004147630.1 KEGG: mno:Mnod_6594 transglutaminase; PFAM: transglutaminase; SMART: transglutaminase YP_004147631.1 KEGG: mmu:494124 calmodulin 5 YP_004147632.1 KEGG: sml:Smlt2549 hypothetical protein YP_004147633.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smt:Smal_3497 glyoxalase/bleomycin resistance protein/dioxygenase YP_004147634.1 KEGG: pla:Plav_3448 hypothetical protein YP_004147635.1 PFAM: polysaccharide deacetylase; KEGG: cja:CJA_1289 polysaccharide deacetylase YP_004147636.1 PFAM: SMP-30/gluconolaconase/LRE-like region-containing protein; KEGG: rmr:Rmar_2273 hypothetical protein YP_004147637.1 KEGG: xac:XAC3704 DNA polymerase-like protein YP_004147638.1 PFAM: radical SAM protein; KEGG: xca:xccb100_3851 hypothetical protein YP_004147639.1 KEGG: smt:Smal_2431 hypothetical protein YP_004147641.1 PFAM: Kelch repeat type 1-containing protein; KEGG: xcb:XC_4204 kelch motif; region: Kelch_1; cl02701 YP_004147642.1 KEGG: xac:XAC3125 hypothetical protein YP_004147643.1 PFAM: alpha/beta hydrolase fold; KEGG: sml:Smlt2516 esterase/chloroperoxidase YP_004147644.1 KEGG: cak:Caul_4422 hypothetical protein YP_004147645.1 KEGG: xcb:XC_3750 hypothetical protein YP_004147646.1 KEGG: rpt:Rpal_5076 AMP-dependent synthetase and ligase YP_004147647.1 PFAM: esterase; KEGG: rba:RB6145 hypothetical protein YP_004147648.1 KEGG: dac:Daci_5060 peptidylprolyl isomerase FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type YP_004147649.1 KEGG: sro:Sros_1233 hypothetical protein YP_004147650.1 KEGG: xac:XAC4206 hypothetical protein YP_004147651.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vap:Vapar_1348 GCN5-related N-acetyltransferase YP_004147652.1 KEGG: swi:Swit_4783 hypothetical protein YP_004147653.1 KEGG: pzu:PHZ_c2905 rifampin ADP-ribosyl transferase YP_004147654.1 KEGG: mkm:Mkms_0158 GCN5-related N-acetyltransferase YP_004147655.1 KEGG: smt:Smal_3606 hypothetical protein YP_004147656.1 KEGG: smt:Smal_3084 hypothetical protein YP_004147657.1 KEGG: ctt:CtCNB1_0089 pyrimidine permease; TIGRFAM: uracil-xanthine permease; PFAM: xanthine/uracil/vitamin C permease YP_004147658.1 PFAM: alpha/beta hydrolase fold; KEGG: mxa:MXAN_5213 alpha/beta fold family hydrolase YP_004147659.1 KEGG: gvi:gll0821 hypothetical protein YP_004147660.1 KEGG: pna:Pnap_4960 hypothetical protein YP_004147661.1 KEGG: shn:Shewana3_3295 hypothetical protein YP_004147662.1 KEGG: xcv:XCV2669 hypothetical protein YP_004147663.1 KEGG: ajs:Ajs_3231 hypothetical protein YP_004147664.1 PFAM: transposase mutator type; KEGG: see:SNSL254_p_0149 transposase InsF YP_004147665.1 KEGG: tbd:Tbd_1954 hypothetical protein YP_004147666.1 KEGG: scl:sce4755 hypothetical protein YP_004147667.1 KEGG: gob:Gobs_3828 major facilitator superfamily MFS_1 YP_004147668.1 KEGG: pap:PSPA7_4261 hypothetical protein; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_004147669.1 KEGG: xca:xccb100_0400 non-specific serine/threonine protein kinase; PFAM: RIO-like kinase; SMART: protein of unknown function RIO1 YP_004147670.1 KEGG: oaa:100075611 similar to My030 protein YP_004147671.1 KEGG: caa:Caka_0294 hypothetical protein YP_004147672.1 KEGG: pfs:PFLU3412 hypothetical protein YP_004147673.1 PFAM: KAP P-loop domain protein; KEGG: ttu:TERTU_0538 KAP family P-loop domain protein YP_004147674.1 KEGG: pap:PSPA7_6297 hypothetical protein YP_004147675.1 KEGG: xcv:XCV4073 histone H1-like protein YP_004147676.1 TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; KEGG: pag:PLES_58931 NrdJa; PFAM: ribonucleotide reductase large subunit YP_004147677.1 SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: xal:XALc_0434 probable periplasmic protease protein; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; type II secretion system protein I/J YP_004147678.1 KEGG: xca:xccb100_4088 hypothetical protein YP_004147679.1 KEGG: sml:Smlt0379 transmembrane protein YP_004147680.1 KEGG: sml:Smlt0378 hypothetical protein YP_004147681.1 PFAM: protein of unknown function UPF0118; KEGG: xca:xccb100_4091 permease family protein YP_004147682.1 KEGG: meh:M301_2201 hypothetical protein YP_004147683.1 KEGG: rpb:RPB_4139 hypothetical protein YP_004147684.1 KEGG: smt:Smal_0262 HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase YP_004147685.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: sml:Smlt0373 leucine aminopeptidase YP_004147686.1 KEGG: llm:llmg_1230 hypothetical protein YP_004147687.1 KEGG: kse:Ksed_09970 hypothetical protein YP_004147688.1 KEGG: mno:Mnod_7374 cytochrome C biogenesis protein transmembrane region YP_004147689.1 KEGG: smt:Smal_0258 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_004147690.1 KEGG: smt:Smal_0257 integral membrane sensor signal transduction histidine kinase; PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_004147691.1 KEGG: xcv:XCV4088 membrane fusion protein; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: hemolysin D family protein YP_004147692.1 KEGG: smt:Smal_0253 ABC transporter; PFAM: ABC transporter related; SMART: ATPase AAA YP_004147693.1 PFAM: protein of unknown function DUF214; KEGG: xal:XALc_0707 hypothetical protein YP_004147694.1 PFAM: protein of unknown function DUF214; KEGG: xal:XALc_0708 hypothetical protein YP_004147695.1 KEGG: xal:XALc_0768 probable adenylate kinase protein; TIGRFAM: adenylate kinase; PFAM: adenylate kinase YP_004147696.1 PFAM: phosphofructokinase; KEGG: xal:XALc_0767 probable 6-phosphofructokinase protein YP_004147697.1 KEGG: xop:PXO_02592 hypothetical protein YP_004147698.1 TIGRFAM: V-type H(+)-translocating pyrophosphatase; KEGG: smt:Smal_3307 membrane-bound proton-translocating pyrophosphatase; PFAM: inorganic H pyrophosphatase YP_004147699.1 PFAM: peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; peptidase M24; KEGG: xcv:XCV3522 aminopeptidase P YP_004147700.1 KEGG: xal:XALc_0788 hypothetical protein; TIGRFAM: yecA family protein; PFAM: Uncharacterised protein family UPF0149 (YgfB) YP_004147701.1 KEGG: xal:XALc_0786 hypothetical protein YP_004147702.1 PFAM: protein of unknown function DUF710; KEGG: xca:xccb100_0922 hypothetical protein YP_004147703.1 KEGG: xac:XAC3409 hypothetical protein; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase YP_004147704.1 PFAM: protein of unknown function DUF55; KEGG: xal:XALc_0783 hypothetical protein YP_004147705.1 TIGRFAM: ribose 5-phosphate isomerase; KEGG: xom:XOO_1023 ribose-5-phosphate isomerase A; PFAM: ribose 5-phosphate isomerase YP_004147706.1 PFAM: protein of unknown function DUF192; KEGG: xfn:XfasM23_0746 hypothetical protein YP_004147707.1 KEGG: xal:XALc_0780 hypothetical protein YP_004147708.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: xop:PXO_02387 hypothetical protein YP_004147709.1 KEGG: xal:XALc_0778 probable thiamine-phosphate pyrophosphorylase protein; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_004147710.1 KEGG: xcv:XCV3535 glutamate-1-semialdehyde aminotransferase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III YP_004147711.1 KEGG: xac:XAC3428 hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_004147713.1 PFAM: histidine triad (HIT) protein; KEGG: sth:STH2408 HIT family protein YP_004147714.1 KEGG: sml:Smlt3876 acetylornithine transaminase protein; TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III YP_004147715.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: rmr:Rmar_0184 cystathionine gamma-synthase YP_004147716.1 PFAM: integral membrane protein TerC; KEGG: xop:PXO_03496 export protein YP_004147717.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: xal:XALc_0775 probable lactoylglutathione lyase protein YP_004147718.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sml:Smlt3879 short chain dehydrogenase YP_004147719.1 KEGG: smt:Smal_3299 phosphoesterase PA-phosphatase related; manually curated; PFAM: phosphoesterase PA-phosphatase related; SNARE associated Golgi protein YP_004147720.1 KEGG: psa:PST_3587 L-sorbosone dehydrogenase YP_004147721.1 KEGG: xca:xccb100_2333 hypothetical protein YP_004147722.1 KEGG: xac:XAC3435 hypothetical protein; PFAM: peptidase S16 lon domain protein; SMART: peptidase S16 YP_004147723.1 KEGG: xal:XALc_0769 hypothetical protein; TIGRFAM: UDP-N-acetylmuramate; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_004147724.1 KEGG: xca:xccb100_4104 predicted chloramphenicol-sensitive protein; TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane YP_004147725.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: xca:xccb100_4105 hypothetical protein YP_004147726.1 KEGG: xac:XAC3686 hypothetical protein YP_004147727.1 PFAM: Host attachment protein; KEGG: smt:Smal_2176 hypothetical protein YP_004147728.1 TIGRFAM: methionine-R-sulfoxide reductase; KEGG: sml:Smlt0563 methionine sulfoxide reductase B; PFAM: methionine sulfoxide reductase B YP_004147729.1 PFAM: YCII-related; KEGG: smt:Smal_0409 DGPFAETKE family protein YP_004147730.1 KEGG: xal:XALc_2916 hypothetical protein YP_004147731.1 KEGG: xca:xccb100_3861 hypothetical protein YP_004147732.1 KEGG: xca:xccb100_3862 transcriptional regulator protein; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver YP_004147733.1 KEGG: xca:xccb100_3863 two-component system sensor kinase; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_004147734.1 KEGG: sml:Smlt4068 hypothetical protein YP_004147735.1 PFAM: HI0933 family protein; KEGG: sml:Smlt2017 hypothetical protein YP_004147736.1 PFAM: YaeQ family protein; KEGG: xca:xccb100_1889 hypothetical protein YP_004147737.1 KEGG: smt:Smal_0434 hypothetical protein YP_004147738.1 KEGG: xcv:XCV0664 hypothetical protein YP_004147739.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; hypothetical protein; histidine kinase A domain protein; KEGG: bbt:BBta_3692 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_004147740.1 KEGG: mch:Mchl_1530 multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; SMART: response regulator receiver YP_004147741.1 KEGG: xca:xccb100_0124 trans-2-enoyl-CoA reductase; PFAM: short-chain alcohol dehydrogenase YP_004147742.1 PFAM: major facilitator superfamily MFS_1; KEGG: psa:PST_2918 major facilitator family transporter YP_004147743.1 KEGG: sus:acid_5444 glycosyl transferase YP_004147744.1 KEGG: xcv:XCV0662 DNA-formamidopyrimidine glycosylase; manually curated; PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein YP_004147745.1 PFAM: protein of unknown function DUF479; KEGG: avn:Avin_37780 hypothetical protein YP_004147746.1 KEGG: xop:PXO_04165 trehalase; PFAM: glycoside hydrolase family 37 YP_004147747.1 PFAM: glutathione S-transferase domain; KEGG: bph:Bphy_5453 glutathione S-transferase domain-containing protein YP_004147748.1 PFAM: glycoside hydrolase family 9; KEGG: ttu:TERTU_0782 glycoside hydrolase family 9 YP_004147749.1 KEGG: xom:XOO_3817 prolyl oligopeptidase family protein YP_004147750.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; CHASE domain protein; PAS fold domain protein; KEGG: pen:PSEEN1480 sensory box protein/GGDEF family protein; SMART: EAL domain protein; GGDEF domain containing protein YP_004147751.1 KEGG: xcb:XC_0621 S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); region: AdoMet_MTases; cl12011 YP_004147752.1 PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: pag:PLES_01451 nucleoside 2-deoxyribosyltransferase YP_004147753.1 PFAM: UspA domain-containing protein; KEGG: sno:Snov_1192 UspA domain protein YP_004147754.1 KEGG: bfo:BRAFLDRAFT_63404 hypothetical protein YP_004147755.1 KEGG: pap:PSPA7_3107 hypothetical protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein YP_004147756.1 KEGG: mlu:Mlut_16390 hypothetical protein YP_004147757.1 KEGG: dau:Daud_2094 hypothetical protein YP_004147758.1 KEGG: bpt:Bpet2362 cardiolipin synthase 2; PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase YP_004147759.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: pfo:Pfl01_5036 aminoacyl-tRNA hydrolase YP_004147760.1 KEGG: xac:XAC3727 hypothetical protein YP_004147761.1 KEGG: xca:xccb100_3888 hypothetical protein YP_004147762.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sde:Sde_0124 short chain dehydrogenase family protein YP_004147763.1 KEGG: mmr:Mmar10_0061 peptidase S41; PFAM: peptidase S41; SMART: peptidase S41 YP_004147764.1 KEGG: xac:XAC3966 hypothetical protein YP_004147765.1 KEGG: xop:PXO_00366 general stress protein YP_004147766.1 KEGG: smt:Smal_1170 17 kDa surface antigen YP_004147767.1 KEGG: cms:CMS_1574 integral membrane transport protein YP_004147768.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pap:PSPA7_1787 hypothetical protein; SMART: GGDEF domain containing protein YP_004147769.1 PFAM: Tannase and feruloyl esterase; KEGG: dac:Daci_3533 feruloyl esterase YP_004147770.1 PFAM: hemerythrin HHE cation binding domain protein; KEGG: dia:Dtpsy_0108 hemerythrin HHE cation binding domain-containing protein YP_004147771.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: smt:Smal_3412 biopolymer transporter ExbD/TolR YP_004147772.1 PFAM: glutathione S-transferase domain; KEGG: smd:Smed_3323 glutathione S-transferase domain-containing protein YP_004147773.1 KEGG: ctt:CtCNB1_1115 hypothetical protein YP_004147774.1 KEGG: eba:ebA2525 transposase YP_004147775.1 KEGG: cph:Cpha266_0268 hypothetical protein YP_004147776.1 KEGG: smt:Smal_3564 hypothetical protein YP_004147777.1 KEGG: hse:Hsero_3925 transposase IS200-like protein YP_004147778.1 KEGG: vap:Vapar_4249 hypothetical protein YP_004147779.1 KEGG: xal:XALc_0337 probable pyruvate dehydrogenase (acetyl-transferring) protein; TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; PFAM: transketolase domain-containing protein YP_004147780.1 KEGG: xca:xccb100_0599 anti-anti-sigma factor; TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS YP_004147781.1 KEGG: rsq:Rsph17025_2929 lipoprotein signal peptidase YP_004147782.1 PFAM: hypothetical protein; KEGG: smt:Smal_1585 abortive infection protein YP_004147783.1 KEGG: cac:CA_C2171 glycosyltransferase YP_004147784.1 KEGG: bpd:BURPS668_1760 lipoprotein YP_004147786.1 KEGG: nda:Ndas_3063 transcriptional regulator, MarR family YP_004147788.1 PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; KEGG: xop:PXO_02395 malic enzyme YP_004147789.1 PFAM: protein of unknown function DUF1704; KEGG: smt:Smal_3364 protein of unknown function DUF1704 YP_004147790.1 KEGG: xac:XAC3493 ribosome-associated GTPase; TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC YP_004147791.1 PFAM: aminotransferase class I and II; KEGG: xcv:XCV3622 aminotransferase AlaT YP_004147792.1 PFAM: lipolytic protein G-D-S-L family; KEGG: xac:XAC3495 hypothetical protein YP_004147793.1 PFAM: methyltransferase type 11; KEGG: xcv:XCV3624 methyltransferase YP_004147794.1 KEGG: dol:Dole_1449 hypothetical protein YP_004147795.1 PFAM: polysaccharide deacetylase; KEGG: xca:xccb100_0830 membrane-anchored carbohydrate deacetylase YP_004147796.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; HesB/YadR/YfhF-family protein; rhodanese; KEGG: xal:XALc_0868 glutaredoxin-like protein; SMART: rhodanese YP_004147797.1 PFAM: protein of unknown function DUF924; KEGG: pzu:PHZ_c0820 hypothetical protein YP_004147798.1 PFAM: DSBA oxidoreductase; KEGG: smt:Smal_3375 DsbA oxidoreductase YP_004147799.1 KEGG: xca:xccb100_0817 hypothetical protein; TIGRFAM: degV family protein; PFAM: DegV family protein YP_004147800.1 KEGG: xom:XOO_3643 hypothetical protein YP_004147801.1 PFAM: protein of unknown function DUF71 ATP-binding region; KEGG: aba:acid345_3648 protein of unknown function DUF71, ATPase YP_004147802.1 KEGG: hoh:Hoch_2572 hypothetical protein YP_004147803.1 TIGRFAM: S-formylglutathione hydrolase; KEGG: sml:Smlt3976 esterase; PFAM: esterase YP_004147804.1 PFAM: semialdehyde dehydrogenase NAD - binding; KEGG: bra:BRADO0673 nucleoside-diphosphate-sugar epimerase YP_004147805.1 KEGG: sml:Smlt3978 alcohol dehydrogenase class-III; TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein YP_004147806.1 PFAM: protein of unknown function DUF156; KEGG: smt:Smal_3388 protein of unknown function DUF156 YP_004147807.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: xcv:XCV0363 metal-dependent phosphohydrolase superfamily protein; SMART: metal-dependent phosphohydrolase HD region YP_004147808.1 KEGG: efe:EFER_2363 peptidoglycan-associated outer membrane lipoprotein YP_004147809.1 TIGRFAM: glutamate/cysteine ligase; KEGG: sml:Smlt3988 glutamate--cysteine ligase GshA; PFAM: glutamate--cysteine ligase GCS2 YP_004147810.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: sml:Smlt3989 transmembrane protein YP_004147811.1 KEGG: xal:XALc_0854 probable gtp-binding protein; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein HSR1-related YP_004147812.1 PFAM: cytochrome C class I; KEGG: xcv:XCV0780 cytochrome C precursor YP_004147813.1 PFAM: DSBA oxidoreductase; KEGG: sml:Smlt3993 thiol:disulfide interchange protein YP_004147814.1 PFAM: DSBA oxidoreductase; KEGG: xca:xccb100_0797 exported thiol:disulfide interchange protein YP_004147815.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: xal:XALc_0850 hypothetical protein YP_004147816.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sml:Smlt4188 tropinone reductase YP_004147817.1 KEGG: sml:Smlt4190 protease IV; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49 YP_004147818.1 KEGG: xca:xccb100_3944 multidrug efflux protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_004147819.1 KEGG: xac:XAC3815 hypothetical protein YP_004147820.1 KEGG: xal:XALc_2872 peptidase protein YP_004147821.1 TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase; helicase; KEGG: xal:XALc_2873 primosome assembly protein, superfamily II helicase; SMART: DEAD-like helicase ; helicase YP_004147822.1 KEGG: cbr:CBG04645 Hypothetical protein CBG04645 YP_004147823.1 KEGG: xcv:XCV3945 hypothetical protein YP_004147824.1 KEGG: pst:PSPTO_4296 metabolite-proton symporter YP_004147825.1 KEGG: sml:Smlt4197 pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004147826.1 PFAM: Uncharacterised protein family UPF0126; KEGG: xcv:XCV3948 hypothetical protein YP_004147827.1 KEGG: xal:XALc_2875 probable rna polymerase sigma-32 factor protein; TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein YP_004147828.1 PFAM: pirin; KEGG: bbr:BB2950 hypothetical protein YP_004147829.1 PFAM: DoxX family protein; KEGG: eba:ebB158 terminal quinol oxidase membrane protein subunit YP_004147830.1 KEGG: xal:XALc_2876 uracil-dna glycosylase protein; TIGRFAM: uracil-DNA glycosylase; PFAM: uracil-DNA glycosylase superfamily YP_004147831.1 KEGG: xcv:XCV3951 two-component system response regulator; PFAM: response regulator receiver; SMART: response regulator receiver YP_004147832.1 PFAM: protein of unknown function DUF214; KEGG: sml:Smlt4261 cell division protein YP_004147833.1 TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; KEGG: xal:XALc_2879 probable abc transporter atp binding protein; SMART: ATPase AAA YP_004147834.1 KEGG: smt:Smal_3674 ATP-dependent RNA helicase RhlB; PFAM: DEAD/DEAH box helicase; helicase; SMART: DEAD-like helicase ; helicase YP_004147835.1 KEGG: xcv:XCV3955 thioredoxin; TIGRFAM: thioredoxin; PFAM: thioredoxin domain-containing protein YP_004147836.1 TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; Rho termination factor RNA-binding; Rho termination factor domain protein; KEGG: smt:Smal_3676 transcription termination factor Rho; SMART: Cold shock protein; ATPase AAA YP_004147837.1 TIGRFAM: TonB family protein; KEGG: smt:Smal_3678 TonB family protein YP_004147838.1 KEGG: smt:Smal_3904 potassium efflux system protein; TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein YP_004147839.1 PFAM: ankyrin; KEGG: xcv:XCV4170 ankyrin-like membrane protein YP_004147840.1 PFAM: protein of unknown function DUF709; KEGG: xal:XALc_0143 hypothetical protein YP_004147841.1 PFAM: beta-ketoacyl synthase; KEGG: xcb:XC_4087 active site; other site YP_004147842.1 KEGG: xca:xccb100_4191 hypothetical protein YP_004147843.1 PFAM: glycosyl transferase family 2; KEGG: xop:PXO_02881 glycosyltransferase YP_004147844.1 PFAM: sodium/hydrogen exchanger; KEGG: vap:Vapar_3561 sodium/hydrogen exchanger YP_004147845.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xop:PXO_02878 3-ketoacyl-(acyl-carrier-protein) reductase YP_004147846.1 KEGG: xoo:XOO4312 hypothetical protein YP_004147847.1 KEGG: xal:XALc_0135 xanthomonadin exporter YP_004147848.1 KEGG: xca:xccb100_4200 hypothetical protein YP_004147849.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: xal:XALc_0133 xanthomonadin biosynthesis acyltransferase precursor protein YP_004147850.1 KEGG: xal:XALc_0132 xanthomonadin biosynthesis acyl carrier protein dehydratase YP_004147851.1 KEGG: xcv:XCV4188 xanthomonadin biosynthesis membrane protein YP_004147852.1 PFAM: phosphopantetheine-binding; KEGG: xac:XAC4101 acyl carrier protein YP_004147853.1 KEGG: xca:xccb100_4206 oxidoreductase; manually curated; PFAM: monooxygenase FAD-binding YP_004147854.1 KEGG: xcv:XCV4191 pteridine-dependent deoxygenase like protein YP_004147855.1 PFAM: beta-lactamase; KEGG: cse:Cseg_4115 beta-lactamase YP_004147856.1 PFAM: patatin; KEGG: xop:PXO_03596 lipoprotein YP_004147857.1 PFAM: AMP-dependent synthetase and ligase; KEGG: xal:XALc_0125 amp-dependent synthetase and ligase family protein YP_004147858.1 PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: xcb:XC_4105 esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters . the catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; region: esterase_lipase; cl12031 YP_004147859.1 PFAM: NUDIX hydrolase; KEGG: smt:Smal_3934 NUDIX hydrolase YP_004147860.1 KEGG: xop:PXO_03746 hypothetical protein YP_004147861.1 KEGG: smt:Smal_3938 coproporphyrinogen III oxidase; PFAM: coproporphyrinogen III oxidase YP_004147862.1 TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; KEGG: xcb:XC_4109 catalytic site; other site; SMART: DNA-directed DNA polymerase; 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; 3'-5' exonuclease YP_004147863.1 KEGG: xal:XALc_0118 hypothetical protein YP_004147864.1 TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: transcription regulator MerR DNA binding; regulatory protein MerR; KEGG: pen:PSEEN3530 superoxide response transcriptional activator; SMART: regulatory protein MerR YP_004147865.1 PFAM: NADPH-dependent FMN reductase; KEGG: smd:Smed_1545 NADPH-dependent FMN reductase YP_004147866.1 KEGG: bmr:BMI_I1559 ABC transporter permease/ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA YP_004147867.1 PFAM: major facilitator superfamily MFS_1; KEGG: avn:Avin_26360 major facilitator family protein YP_004147868.1 PFAM: aldo/keto reductase; KEGG: ppw:PputW619_2662 aldo/keto reductase YP_004147869.1 TIGRFAM: DNA-3-methyladenine glycosylase; KEGG: sml:Smlt2633 DNA glycosylase; PFAM: methylpurine-DNA glycosylase (MPG) YP_004147870.1 PFAM: protein of unknown function DUF204; KEGG: smt:Smal_3977 protein of unknown function DUF204 YP_004147871.1 PFAM: UspA domain-containing protein; KEGG: smt:Smal_3943 UspA domain protein YP_004147872.1 KEGG: xal:XALc_0113 probable atp-dependent dna helicase protein; TIGRFAM: DNA helicase II; PFAM: UvrD/REP helicase YP_004147873.1 PFAM: Uncharacterised protein family UPF0114; KEGG: sml:Smlt4505 hypothetical protein YP_004147874.1 PFAM: glutathione S-transferase domain; KEGG: sml:Smlt4504 glutathione S transferase YP_004147875.1 KEGG: stp:Strop_4071 phenylacetate-CoA oxygenase, PaaI subunit YP_004147876.1 KEGG: bpm:BURPS1710b_A0170 transposase B; manually curated; PFAM: Integrase catalytic region YP_004147877.1 KEGG: ret:RHE_CH01017 hypothetical protein YP_004147878.1 KEGG: scb:SCAB_90761 hypothetical protein YP_004147879.1 PFAM: formylmethionine deformylase; manually curated; KEGG: mes:Meso_0394 peptide deformylase; TIGRFAM: peptide deformylase YP_004147880.1 KEGG: ddc:Dd586_0785 peptidase M16 domain protein YP_004147881.1 manually curated; KEGG: amr:AM1_6087 hypothetical protein YP_004147882.1 KEGG: abn:AB57_0293 aminoglycoside resistance protein; PFAM: DNA polymerase beta domain protein region YP_004147883.1 PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: xca:xccb100_4151 dipeptidyl peptidase IV YP_004147884.1 KEGG: sml:Smlt4500 hypothetical protein YP_004147885.1 KEGG: sml:Smlt4498 transmembrane protein YP_004147886.1 KEGG: azo:azo2821 delta-aminolevulinic acid dehydratase; PFAM: delta-aminolevulinic acid dehydratase YP_004147887.1 PFAM: WD40-like beta Propeller containing protein; KEGG: xal:XALc_2994 hypothetical protein YP_004147888.1 KEGG: xcb:XC_4041 NAD(P) binding site; other site; TIGRFAM: shikimate 5-dehydrogenase; PFAM: shikimate dehydrogenase substrate binding domain protein; shikimate/quinate 5-dehydrogenase YP_004147889.1 KEGG: cgt:cgR_1797 hypothetical protein YP_004147890.1 KEGG: oan:Oant_1690 hypothetical protein YP_004147891.1 KEGG: amc:MADE_03528 hypothetical protein YP_004147892.1 PFAM: protein of unknown function DUF58; KEGG: sml:Smlt4486 hypothetical protein YP_004147893.1 KEGG: sml:Smlt4485 ATPase; PFAM: ATPase associated with various cellular activities AAA_3; SMART: ATPase AAA YP_004147894.1 KEGG: smt:Smal_3846 hypothetical protein YP_004147895.1 KEGG: sml:Smlt4483 transmembrane protein YP_004147896.1 PFAM: protein of unknown function DUF95 transmembrane; KEGG: sml:Smlt4482 transmembrane protein YP_004147897.1 PFAM: RDD domain containing protein; KEGG: smt:Smal_3843 RDD domain containing protein YP_004147898.1 KEGG: dia:Dtpsy_0043 protein of unknown function UPF0153; manually curated; PFAM: protein of unknown function UPF0153 YP_004147899.1 KEGG: xca:xccb100_0374 hypothetical protein YP_004147900.1 PFAM: aldehyde dehydrogenase; KEGG: xal:XALc_0095 aldehyde dehydrogenase protein YP_004147901.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_1369 major facilitator transporter YP_004147902.1 PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: mno:Mnod_2756 pyridoxal-5'-phosphate-dependent protein beta subunit YP_004147903.1 KEGG: sml:Smlt4619 endonuclease/exonuclease/phosphatase family protein; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase YP_004147904.1 PFAM: transglycosylase; KEGG: smt:Smal_3969 transglycosylase YP_004147905.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: sml:Smlt4617 4'-phosphopantetheinyl transferase superfamily protein YP_004147906.1 KEGG: xac:XAC4165 16S rRNA methyltransferase GidB; TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein YP_004147907.1 KEGG: sml:Smlt4615 chromosome partitioning protein YP_004147908.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: xca:xccb100_4034 chromosome partitioning protein; SMART: ParB domain protein nuclease YP_004147909.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: sml:Smlt4612 UDP-glucuronic acid epimerase YP_004147910.1 PFAM: glycosyl transferase family 2; KEGG: sml:Smlt4611 glycosyl transferase YP_004147911.1 PFAM: lipid A biosynthesis domain protein; KEGG: smt:Smal_3961 lipid A biosynthesis domain protein YP_004147912.1 KEGG: smt:Smal_3951 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28 YP_004147913.1 KEGG: sml:Smlt4598 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33 YP_004147914.1 PFAM: FAD dependent oxidoreductase; KEGG: xac:XAC4152 hypothetical protein YP_004147915.1 TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; KEGG: xca:xccb100_4280 gluconokinase; PFAM: shikimate kinase YP_004147916.1 PFAM: glycosyltransferase 36; KEGG: xal:XALc_0083 ndvb protein (glycosyltransferase family 36 ) YP_004147917.1 TIGRFAM: sugar (glycoside-Pentoside-Hexuronide) transporter; KEGG: xcb:XC_4169 sugar (glycoside-pentoside-hexuronide) transporter; region: gph; TIGR00792 YP_004147918.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; Na+/solute symporter; response regulator receiver; KEGG: smt:Smal_3978 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver YP_004147919.1 KEGG: xac:XAC3630 copper resistance protein A; TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 3; multicopper oxidase type 1; multicopper oxidase type 2 YP_004147920.1 PFAM: copper resistance B precursor; KEGG: xcv:XCV3748 copper resistance protein B YP_004147921.1 KEGG: xop:PXO_03022 hypothetical protein YP_004147922.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sml:Smlt2640 dehydrogenase/oxidoreductase protein YP_004147923.1 KEGG: cnb:CNBA5550 hypothetical protein YP_004147924.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nmu:Nmul_A1489 short chain dehydrogenase YP_004147925.1 KEGG: cti:RALTA_B1502 conserved hypothetical protein; integral membrane protein YP_004147926.1 KEGG: tbd:Tbd_1933 hypothetical protein; manually curated; PFAM: NAD-dependent epimerase/dehydratase YP_004147927.1 KEGG: sml:Smlt2547 transmembrane protein YP_004147928.1 PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] iron-sulphur domain; KEGG: tra:Trad_0704 FAD dependent oxidoreductase YP_004147929.1 KEGG: bgl:bglu_1g11650 sigma-54 dependent DNA-binding response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver YP_004147930.1 KEGG: sgr:SGR_1028 hypothetical protein YP_004147931.1 KEGG: nve:NEMVE_v1g233079 hypothetical protein YP_004147932.1 KEGG: aga:AgaP_AGAP004078 AGAP004078-PA YP_004147933.1 PFAM: isochorismatase hydrolase; KEGG: sml:Smlt2552 isochorismatase YP_004147934.1 KEGG: xac:XAC3726 hypothetical protein; PFAM: manganese containing catalase YP_004147935.1 PFAM: protein of unknown function DUF892; KEGG: xca:xccb100_3867 hypothetical protein YP_004147936.1 TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; hypothetical protein; PAS fold-3 domain protein; KEGG: met:M446_4215 signal transduction histidine kinase; SMART: PAS domain containing protein; PAC repeat-containing protein YP_004147937.1 KEGG: sme:SMa0114 two-component response regulator; PFAM: response regulator receiver; SMART: response regulator receiver YP_004147938.1 KEGG: pol:Bpro_5217 von Willebrand factor, type A YP_004147939.1 KEGG: xal:XALc_2846 probable rna polymerase sigma-70 factor, RpoD protein; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 non-essential domain protein; sigma-70 1.1 domain protein; sigma-70 region 1.2; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein YP_004147940.1 KEGG: xca:xccb100_3918 D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_004147941.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: xca:xccb100_3919 lipid A biosynthesis lauroyl acyltransferase YP_004147942.1 PFAM: membrane-flanked domain; KEGG: xca:xccb100_3922 hypothetical protein YP_004147943.1 PFAM: membrane-flanked domain; KEGG: xca:xccb100_3923 hypothetical protein YP_004147944.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: xcv:XCV3920 hypothetical protein YP_004147945.1 PFAM: glycosyl transferase family 2; KEGG: sml:Smlt4172 lipopolysaccharide core biosynthesis glycosyl transferase YP_004147946.1 KEGG: sml:Smlt0089 hypothetical protein YP_004147947.1 PFAM: fatty acid desaturase; KEGG: xcb:XC_0171 di-iron ligands; other site YP_004147948.1 KEGG: xca:xccb100_0180 ABC transporter ATP-binding component; PFAM: ABC transporter; SMART: ATPase AAA YP_004147949.1 TIGRFAM: formamidopyrimidine-DNA glycosylase; KEGG: smt:Smal_0045 formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding YP_004147950.1 PFAM: periplasmic glucan biosynthesis protein MdoG; KEGG: xal:XALc_3161 probable glucans biosynthesis protein d precursor YP_004147951.1 KEGG: xac:XAC1284 two-component system regulatory protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_004147952.1 KEGG: xca:xccb100_3154 two-component system sensor/response regulator fusionprotein, probable; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; response regulator receiver YP_004147953.1 KEGG: smt:Smal_1738 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type YP_004147954.1 KEGG: xac:XAC1280 protein-glutamate methylesterase; PFAM: CheB methylesterase YP_004147955.1 KEGG: xca:xccb100_3157 two-component system regulatory protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein YP_004147956.1 KEGG: smt:Smal_0047 thymidine kinase; PFAM: thymidine kinase YP_004147957.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: xal:XALc_3162 hypothetical protein YP_004147958.1 KEGG: smt:Smal_0049 Sel1 domain protein repeat-containing protein YP_004147959.1 manually curated; TIGRFAM: ATP-dependent DNA helicase Rep; KEGG: xcv:XCV4383 ATP-dependent DNA helicase; PFAM: UvrD/REP helicase YP_004147960.1 PFAM: aldose 1-epimerase; KEGG: sma:SAV_4521 hypothetical protein YP_004147961.1 KEGG: cja:CJA_1316 beta-xylosidase/alpha-L-arabinfuranosidase, , gly43F; PFAM: glycoside hydrolase family 43 YP_004147962.1 KEGG: xcv:XCV4363 glycoside-pentoside-hexuronide:cation symporter family protein; TIGRFAM: sugar (glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1 YP_004147963.1 KEGG: xca:xccb100_4332 TonB-dependent outer membrane xylan receptor precursor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004147964.1 PFAM: major facilitator superfamily MFS_1; KEGG: xcv:XCV4361 anion:cation symporter family protein YP_004147965.1 KEGG: cak:Caul_1833 hypothetical protein YP_004147966.1 KEGG: xal:XALc_0035 probable glucuronate isomerase protein; PFAM: glucuronate isomerase YP_004147967.1 PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; KEGG: xcb:XC_4208 glycosyl hydrolases family 2, TIM barrel domain; region: glyco_hydro_2_C; pfam02836 YP_004147968.1 PFAM: glycoside hydrolase family 10; KEGG: xcb:XC_4207 glycosyl hydrolase family 10; region: glyco_hydro_10; cl01495; SMART: glycoside hydrolase family 10 YP_004147969.1 KEGG: gob:Gobs_3905 GTP-binding proten HflX YP_004147970.1 KEGG: sml:Smlt0120 helicase; PFAM: DEAD/DEAH box helicase; helicase; protein of unknown function DUF1998; SMART: DEAD-like helicase ; helicase YP_004147971.1 KEGG: xom:XOO_0147 hypothetical protein YP_004147972.1 PFAM: Lycopene beta and epsilon cyclase; KEGG: xoo:XOO0460 halogenase YP_004147973.1 KEGG: kva:Kvar_0316 gluconate transporter; TIGRFAM: gluconate transporter; PFAM: gluconate transporter YP_004147974.1 TIGRFAM: dehydratase, YjhG/YagF family; KEGG: enc:ECL_00674 phage predicted dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_004147975.1 PFAM: aldehyde dehydrogenase; KEGG: xca:xccb100_1755 aldehyde dehydrogenase (NADP(+)) YP_004147976.1 PFAM: fumarylacetoacetate hydrolase; KEGG: rxy:Rxyl_0545 fumarylacetoacetate hydrolase YP_004147977.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: xca:xccb100_4312 fructuronate reductase YP_004147978.1 KEGG: xcv:XCV4337 beta-glucosidase precursor; PFAM: glycoside hydrolase; SMART: PA14 domain protein YP_004147979.1 KEGG: xcv:XCV4336 xylosidase precursor; PFAM: glycoside hydrolase family 43 YP_004147980.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: xal:XALc_0060 probable starvation-sensing protein YP_004147981.1 PFAM: protein of unknown function DUF303 acetylesterase; glycoside hydrolase family 2 sugar binding; KEGG: xac:XAC4228 sialic acid-specific 9-O-acetylesterase YP_004147982.1 KEGG: pzu:PHZ_c2475 alpha-glucuronidase; PFAM: glycosyl hydrolase 67 middle domain protein; glycosyl hydrolase 67 C-teriminal domain protein YP_004147983.1 KEGG: xca:xccb100_4306 transcriptional regulator, LacI family; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_004147984.1 TIGRFAM: sugar transporter; KEGG: ttu:TERTU_0386 MFS transporter SP family YP_004147985.1 TIGRFAM: xylose isomerase; KEGG: xcb:XC_4191 xylose isomerase; region: PLN02923; PLN02923; PFAM: Xylose isomerase domain-containing protein TIM barrel YP_004147986.1 KEGG: xal:XALc_1195 probable xylulose kinase protein; TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY-like YP_004147987.1 PFAM: DinB family protein; KEGG: bbr:BB1389 hypothetical protein YP_004147988.1 KEGG: xcb:XC_4227 Haloacid dehalogenase-like hydrolases. the haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others,...; region: HAD_like; cl11391; TIGRFAM: 5'-nucleotidase, lipoprotein e(P4) family; PFAM: acid phosphatase (class B) YP_004147989.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; KEGG: xal:XALc_0047 probable orotidine 5'-phosphate decarboxylase; protein; PFAM: Orotidine 5'-phosphate decarboxylase YP_004147990.1 KEGG: xal:XALc_0043 hypothetical protein YP_004147991.1 KEGG: smt:Smal_0056 glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_004147992.1 KEGG: she:Shewmr4_3774 signal recognition particle-docking protein FtsY YP_004147993.1 KEGG: rpd:RPD_0429 tRNA modification GTPase TrmE YP_004147994.1 KEGG: hne:HNE_1246 serine/threonine protein kinase; PFAM: serine/threonine-protein kinase-like domain; transcriptional regulator domain-containing protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; Tetratricopeptide repeat YP_004147995.1 PFAM: protein of unknown function DUF465; KEGG: smt:Smal_0057 hypothetical protein YP_004147996.1 PFAM: PP-loop domain protein; KEGG: sml:Smlt0103 hypothetical protein YP_004147997.1 PFAM: exonuclease RdgC; KEGG: xom:XOO_4158 recombination associated protein YP_004147998.1 KEGG: ank:AnaeK_1178 metal dependent phosphohydrolase YP_004147999.1 PFAM: protein of unknown function DUF45; KEGG: xca:xccb100_4302 hypothetical protein YP_004148000.1 PFAM: SMP-30/gluconolaconase/LRE-like region-containing protein; KEGG: cja:CJA_2000 gluconolactonase precursor YP_004148001.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: sml:Smlt0423 fatty acid transporter, membrane protein YP_004148002.1 PFAM: rhomboid family protein; KEGG: xac:XAC0020 hypothetical protein YP_004148003.1 PFAM: Domain of unknown function DUF1820; KEGG: xca:xccb100_0021 hypothetical protein YP_004148004.1 TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; KEGG: xal:XALc_0393 periplasmic carboxyl-terminal protease precursor signal peptide protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein YP_004148005.1 PFAM: peptidase M23; KEGG: xal:XALc_0392 peptidase protein YP_004148006.1 KEGG: smt:Smal_0302 hypothetical protein YP_004148007.1 PFAM: peptidase M28; KEGG: xac:XAC0026 hypothetical protein YP_004148008.1 KEGG: xcv:XCV2089 siroheme synthase; TIGRFAM: siroheme synthase; PFAM: Sirohaem synthase, dimerisation domain; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_004148009.1 PFAM: alpha/beta hydrolase fold; KEGG: xca:xccb100_4300 hydrolase of the alpha/beta fold superfamily,probable YP_004148010.1 TIGRFAM: ferrochelatase; KEGG: smt:Smal_3991 ferrochelatase; PFAM: ferrochelatase YP_004148011.1 KEGG: xcv:XCV4322 hypothetical protein YP_004148012.1 KEGG: sml:Smlt4641 twin arginine translocase protein A; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106 YP_004148013.1 KEGG: xal:XALc_0072 probable sec-independent protein translocase; TIGRFAM: twin-arginine translocation protein, Tatsubunit beta; PFAM: sec-independent translocation protein mttA/Hcf106 YP_004148014.1 KEGG: xal:XALc_0073 probable sec-independent periplasmic protein translocase; TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase YP_004148015.1 KEGG: xca:xccb100_4294 hypothetical membrane protein YP_004148016.1 PFAM: glutamine amidotransferase class-I; KEGG: xca:xccb100_4293 glutamine amidotransferase YP_004148017.1 TIGRFAM: glycyl-tRNA synthetase subunit alpha; KEGG: xca:xccb100_4290 glycyl-tRNA synthetase subunit alpha; PFAM: glycyl-tRNA synthetase subunit alpha YP_004148018.1 TIGRFAM: glycyl-tRNA synthetase subunit beta; KEGG: xoo:XOO4398 glycyl-tRNA synthetase subunit beta YP_004148019.1 PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; KEGG: sml:Smlt4633 surface antigen exported protein YP_004148020.1 PFAM: protein of unknown function DUF490; KEGG: xal:XALc_3136 hypothetical protein YP_004148021.1 PFAM: peptidase S46; KEGG: sml:Smlt4628 hypothetical protein YP_004148022.1 KEGG: mxa:MXAN_6537 lipoprotein YP_004148023.1 KEGG: xcb:XC_1964 RNA binding site; other site; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold YP_004148024.1 KEGG: rce:RC1_2581 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein YP_004148025.1 KEGG: bbt:BBta_3718 carboxymuconolactone decarboxylase; TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase YP_004148026.1 KEGG: dia:Dtpsy_2752 transcriptional regulator, TrmB; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR YP_004148027.1 KEGG: rme:Rmet_2371 rhodanese-like protein; PFAM: rhodanese; SMART: rhodanese YP_004148028.1 PFAM: glutathione S-transferase domain; KEGG: dze:Dd1591_2500 glutathione S-transferase domain protein YP_004148029.1 KEGG: xca:xccb100_0403 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; TIGRFAM: glucose inhibited division protein A; PFAM: glucose-inhibited division protein A YP_004148030.1 KEGG: smt:Smal_3834 hypothetical protein YP_004148031.1 PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: xca:xccb100_0406 tryptophan synthase YP_004148032.1 PFAM: protein of unknown function DUF218; KEGG: xca:xccb100_0407 hypothetical protein YP_004148033.1 PFAM: protein of unknown function DUF1486; KEGG: har:HEAR2043 hypothetical protein YP_004148034.1 KEGG: xca:xccb100_0410 biotin biosynthesis protein; TIGRFAM: biotin biosynthesis protein BioC; PFAM: methyltransferase type 11 YP_004148035.1 TIGRFAM: bioH protein; KEGG: xop:PXO_03628 pimeloyl-BioC--CoA transferase BioH; PFAM: alpha/beta hydrolase fold YP_004148036.1 KEGG: xcv:XCV0401 hypothetical protein YP_004148037.1 TIGRFAM: 8-amino-7-oxononanoate synthase; KEGG: xca:xccb100_0415 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II YP_004148038.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: biotin synthase; KEGG: smt:Smal_3827 biotin synthase; PFAM: biotin and thiamin synthesis associated; radical SAM protein YP_004148039.1 PFAM: phosphoribosyltransferase; KEGG: xal:XALc_0355 competence protein (amidophosphoribosyltransferases) YP_004148040.1 KEGG: xca:xccb100_1019 transcriptional regulator, LacI family; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_004148041.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: xcv:XCV1601 hypothetical protein YP_004148042.1 PFAM: PfkB domain protein; KEGG: rsl:RPSI07_mp1096 fructokinase YP_004148043.1 KEGG: sal:Sala_1395 glucose/galactose transporter; TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1 YP_004148044.1 KEGG: xal:XALc_0356 probable 4-hydroxybenzoate octaprenyltransferase UbiA protein; TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase YP_004148045.1 TIGRFAM: capsular exopolysaccharide family; KEGG: pfs:PFLU3677 tyrosine-protein kinase; PFAM: lipopolysaccharide biosynthesis protein YP_004148046.1 manually curated; PFAM: protein-tyrosine phosphatase, low molecular weight; KEGG: bph:Bphy_3277 protein tyrosine phosphatase; SMART: protein-tyrosine phosphatase, low molecular weight YP_004148047.1 KEGG: scl:sce5309 glycosyl hydrolase YP_004148048.1 PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: pfs:PFLU3662 polysaccharide export protein YP_004148049.1 manually curated; KEGG: pfs:PFLU3661 lipoprotein YP_004148050.1 TIGRFAM: undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: tgr:Tgr7_2083 undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase YP_004148051.1 TIGRFAM: nucleotide sugar dehydrogenase; KEGG: slt:Slit_1377 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_004148052.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: plm:Plim_3735 NAD-dependent epimerase/dehydratase YP_004148053.1 TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; KEGG: sjp:SJA_C1-19230 glycosyltransferase; PFAM: glycosyl transferase WecB/TagA/CpsF YP_004148054.1 KEGG: rpt:Rpal_2089 hypothetical protein YP_004148055.1 PFAM: polysaccharide biosynthesis protein; KEGG: ach:Achl_3901 polysaccharide biosynthesis protein YP_004148056.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: smt:Smal_0510 NAD-dependent epimerase/dehydratase YP_004148057.1 PFAM: acyltransferase 3; KEGG: npu:Npun_R6589 acyltransferase 3 YP_004148058.1 KEGG: bgl:bglu_2g16240 PAP2 family protein; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related YP_004148059.1 KEGG: ajs:Ajs_0810 hypothetical protein YP_004148060.1 KEGG: ppg:PputGB1_3114 ATPase central domain-containing protein; PFAM: ATPase AAA; SMART: ATPase AAA YP_004148061.1 KEGG: smt:Smal_0369 hypothetical protein YP_004148062.1 KEGG: xcv:XCV0040 hypothetical protein YP_004148063.1 KEGG: sml:Smlt0110 viral-like DNA topoisomerase YP_004148064.1 KEGG: xal:XALc_3109 hypothetical protein YP_004148065.1 KEGG: xca:xccb100_0037 glutamate synthase subunit alpha; PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein YP_004148066.1 KEGG: xal:XALc_3111 probable glutamate synthase, beta subunit protein; TIGRFAM: glutamate synthase, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004148067.1 KEGG: lhk:LHK_01011 BenE; TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transporter YP_004148068.1 PFAM: TonB-dependent receptor; KEGG: ccs:CCNA_03549 TonB-dependent receptor YP_004148069.1 KEGG: sml:Smlt4686 dipeptidase; PFAM: peptidase M19 renal dipeptidase YP_004148070.1 KEGG: sml:Smlt0106 methylglyoxal synthase YP_004148071.1 PFAM: protein of unknown function DUF833; KEGG: sml:Smlt0746 hypothetical protein YP_004148072.1 KEGG: xca:xccb100_4368 phytochrome-like protein; PFAM: GAF domain protein; PAS fold-2 domain protein; Phytochrome central region domain protein; SMART: GAF domain protein YP_004148073.1 PFAM: Haem oxygenase-like; KEGG: xca:xccb100_4369 hypothetical protein YP_004148074.1 PFAM: propeptide PepSY amd peptidase M4; KEGG: xca:xccb100_0028 exported peptidase YP_004148075.1 KEGG: xca:xccb100_4370 drug:H+ antiporter-1 family protein; manually curated; PFAM: major facilitator superfamily MFS_1 YP_004148076.1 KEGG: xcv:XCV4395 transglycosylase precursor; TIGRFAM: lytic murein transglycosylase; PFAM: peptidoglycan-binding domain 1 protein YP_004148077.1 PFAM: aldose 1-epimerase; KEGG: xop:PXO_03307 transglycolase YP_004148078.1 KEGG: xca:xccb100_0187 hypothetical protein; TIGRFAM: methyltransferase; PFAM: protein of unknown function DUF2260 YP_004148079.1 PFAM: protein of unknown function DUF323; KEGG: sml:Smlt4652 hypothetical protein YP_004148080.1 KEGG: sml:Smlt4654 hypothetical protein YP_004148081.1 TIGRFAM: GTP cyclohydrolase I; KEGG: smt:Smal_4006 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/nitrile oxidoreductase YP_004148082.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: ara:Arad_7194 sensory box/GGDEF family protein; SMART: EAL domain protein; GGDEF domain containing protein YP_004148083.1 PFAM: alpha/beta hydrolase fold; KEGG: sal:Sala_1200 alpha/beta hydrolase fold YP_004148084.1 PFAM: protein of unknown function DUF885; KEGG: hne:HNE_3226 lipoprotein YP_004148085.1 KEGG: smt:Smal_2634 hypothetical protein YP_004148086.1 PFAM: Domain of unknown function DUF1905; KEGG: xcb:XC_4260 domain of unknown function (DUF1905); region: DUF1905; pfam08922 YP_004148087.1 PFAM: regulatory protein TetR; KEGG: rme:Rmet_0351 TetR family transcriptional regulator YP_004148088.1 KEGG: sml:Smlt1597 hemolysin D YP_004148089.1 KEGG: smt:Smal_1355 ABC transporter; PFAM: ABC transporter related; SMART: ATPase AAA YP_004148090.1 PFAM: ABC transporter; KEGG: sml:Smlt1599 ABC transporter, transmembrane protein YP_004148091.1 KEGG: bpe:BP0074 heat shock protein 90; PFAM: heat shock protein Hsp90-like; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_004148092.1 KEGG: xac:XAC0249 peptidyl-dipeptidase; PFAM: peptidase M3A and M3B thimet/oligopeptidase F YP_004148093.1 KEGG: xal:XALc_1215 hypothetical protein; manually curated; PFAM: NERD domain protein YP_004148094.1 KEGG: sti:Sthe_1387 polyprenyl synthetase YP_004148095.1 PFAM: restriction endonuclease; KEGG: cph:Cpha266_1614 restriction endonuclease YP_004148096.1 KEGG: ccs:CCNA_03619 zinc metalloprotease; PFAM: peptidase M13; peptidase M13, neprilysin-like YP_004148097.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sme:SMa2341 LysR family transcriptional regulator YP_004148098.1 KEGG: pmy:Pmen_2897 hypothetical protein YP_004148099.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: psb:Psyr_0194 short-chain dehydrogenase/reductase SDR YP_004148100.1 KEGG: pmy:Pmen_2898 ketosteroid isomerase-like protein YP_004148101.1 KEGG: kva:Kvar_3659 hypothetical protein YP_004148102.1 KEGG: bpy:Bphyt_3342 hypothetical protein YP_004148103.1 TIGRFAM: exodeoxyribonuclease V subunit alpha; KEGG: smt:Smal_4013 exodeoxyribonuclease V subunit alpha; SMART: ATPase AAA YP_004148104.1 KEGG: xac:XAC4336 exodeoxyribonuclease V subunit beta; TIGRFAM: exodeoxyribonuclease V subunit beta; PFAM: UvrD/REP helicase YP_004148105.1 KEGG: smt:Smal_4015 exodeoxyribonuclease V, gamma subunit; TIGRFAM: exodeoxyribonuclease V subunit gamma YP_004148106.1 PFAM: Na+/Picotransporter; KEGG: pmy:Pmen_4194 Na+/Pi-cotransporter YP_004148107.1 KEGG: xal:XALc_0027 probable abc transporter atp-binding protein; PFAM: ABC transporter; SMART: ATPase AAA YP_004148108.1 PFAM: protein of unknown function DUF140; KEGG: smt:Smal_4017 protein of unknown function DUF140 YP_004148109.1 PFAM: hypothetical protein; KEGG: xal:XALc_0029 abc transporter substrate-binding protein precursor YP_004148110.1 PFAM: toluene tolerance family protein; KEGG: xal:XALc_0030 periplasmic abc-type transporter auxiliary component precursor protein YP_004148111.1 KEGG: xom:XOO_0277 hypothetical protein YP_004148112.1 PFAM: VacJ family lipoprotein; KEGG: xal:XALc_0032 lipoprotein YP_004148113.1 PFAM: protein of unknown function DUF195; KEGG: smt:Smal_4024 protein of unknown function DUF195 YP_004148114.1 PFAM: protein of unknown function DUF488; KEGG: sno:Snov_1311 protein of unknown function DUF488 YP_004148115.1 KEGG: pag:PLES_45601 sodium/proline symporter PutP; TIGRFAM: sodium/proline symporter; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter YP_004148116.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sgr:SGR_6656 oxidoreductase YP_004148117.1 PFAM: methyltransferase type 11; KEGG: xal:XALc_3146 hypothetical protein YP_004148118.1 TIGRFAM: isocitrate dehydrogenase, NADP-dependent; KEGG: xac:XAC3835 isocitrate dehydrogenase; PFAM: isocitrate dehydrogenase NADP-dependent monomeric type YP_004148119.1 KEGG: nve:NEMVE_v1g222486 hypothetical protein YP_004148120.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: smt:Smal_3637 LysR family transcriptional regulator YP_004148121.1 KEGG: xcv:XCV3958 bifunctional isocitrate dehydrogenase kinase/phosphatase protein; PFAM: isocitrate dehydrogenase kinasephosphatase YP_004148122.1 KEGG: xca:xccb100_0296 exported methyltransferase YP_004148123.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: ddr:Deide_3p00234 antibiotic biosynthesis monooxygenase YP_004148124.1 PFAM: pseudouridine synthase; KEGG: smt:Smal_3888 pseudouridine synthase YP_004148125.1 KEGG: xca:xccb100_0299 conserved small membrane protein YP_004148126.1 TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; helicase; helicase-associated domain protein; KEGG: sml:Smlt4524 ATP-dependent helicase; SMART: helicase; DEAD-like helicase YP_004148127.1 PFAM: TatD-related deoxyribonuclease; KEGG: sml:Smlt4523 TatD related deoxyribonuclease YP_004148128.1 KEGG: bbr:BB0749 lipoprotein YP_004148129.1 PFAM: OmpA/MotB domain protein; KEGG: pfs:PFLU2242 hypothetical protein YP_004148130.1 KEGG: alv:Alvin_1761 hypothetical protein YP_004148131.1 PFAM: TadE family protein; KEGG: hna:Hneap_2294 TadE family protein YP_004148132.1 PFAM: protein of unknown function DUF192; KEGG: hna:Hneap_2306 protein of unknown function DUF192 YP_004148133.1 PFAM: type II secretion system F domain; KEGG: hna:Hneap_2307 type II secretion system F domain protein YP_004148134.1 PFAM: type II secretion system F domain; KEGG: hna:Hneap_2308 type II secretion system F domain protein YP_004148135.1 KEGG: hna:Hneap_2309 FHA domain containing protein; PFAM: type II secretion system protein E; Forkhead-associated protein; SMART: Forkhead-associated protein YP_004148136.1 PFAM: type II and III secretion system protein; KEGG: hna:Hneap_2310 type II and III secretion system protein YP_004148137.1 KEGG: hna:Hneap_2311 Flp pilus assembly protein CpaB; TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein YP_004148138.1 KEGG: hna:Hneap_2312 hypothetical protein YP_004148139.1 KEGG: hna:Hneap_2313 hypothetical protein YP_004148140.1 KEGG: hna:Hneap_2314 hypothetical protein YP_004148141.1 KEGG: pam:PANA_0391 hypothetical protein YP_004148142.1 KEGG: hna:Hneap_2318 hypothetical protein YP_004148143.1 KEGG: ilo:IL0910 Flp/Fap pilin-like protein YP_004148144.1 KEGG: reh:H16_A0977 hypothetical protein YP_004148145.1 KEGG: sgr:SGR_4840 two-component system sensor kinase YP_004148146.1 KEGG: rec:RHECIAT_CH0001818 hypothetical protein YP_004148147.1 KEGG: rce:RC1_0571 para-aminobenzoate synthase, component I YP_004148148.1 KEGG: xcv:XCV4220 protein kinase; PFAM: serine/threonine-protein kinase-like domain; Tetratricopeptide TPR_1 repeat-containing protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; Tetratricopeptide repeat YP_004148149.1 KEGG: cak:Caul_5370 P-type conjugative transfer protein TrbL YP_004148150.1 TIGRFAM: RNA polymerase sigma factor; RNA polymerase sigma factor, sigma-70 family; KEGG: ote:Oter_2422 ECF subfamily RNA polymerase sigma-24 factor YP_004148151.1 TIGRFAM: 2-dehydropantoate 2-reductase; KEGG: sml:Smlt4521 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein YP_004148152.1 PFAM: ABC transporter; KEGG: xcv:XCV4153 ABC transporter permease YP_004148153.1 KEGG: xal:XALc_3008 abc transporter atp-binding abc transporter atp-binding protein; PFAM: ABC transporter; SMART: AAA ATPase YP_004148154.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: xcv:XCV4151 phenol hydroxylase component YP_004148156.1 KEGG: xca:xccb100_4162 hypothetical protein YP_004148157.1 KEGG: nml:Namu_3903 transcriptional regulator, XRE family; PFAM: hypothetical protein; SMART: hypothetical protein YP_004148158.1 PFAM: TAP domain protein; alpha/beta hydrolase fold; KEGG: xal:XALc_3006 hypothetical hydrolase precursor protein YP_004148159.1 KEGG: xal:XALc_3005 probable na+ extrusion abc transporter atp-binding protein; PFAM: ABC transporter; SMART: AAA ATPase YP_004148160.1 KEGG: xac:XAC4053 sodium ABC transporter permease YP_004148161.1 KEGG: xca:xccb100_4157 TonB-like periplasmic protein precursor; TIGRFAM: TonB family protein; PFAM: TonB domain YP_004148162.1 KEGG: sml:Smlt4691 tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein TrmE-like; GTP-binding protein HSR1-related YP_004148163.1 KEGG: sml:Smlt4693 inner membrane protein translocase component YidC; TIGRFAM: membrane protein insertase, YidC/Oxa1 family; membrane protein insertase, YidC/Oxa1 family domain containing; PFAM: hypothetical protein YP_004148164.1 KEGG: smt:Smal_4044 ribonuclease P protein component; TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein YP_004148165.1 KEGG: xfn:XfasM23_2226 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34