-- dump date 20140620_013345 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type NP_742171.1 26986746 1043468 complement(147..1019) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02195; parB-like partition protein 1019 parB 1043468 parB Pseudomonas putida KT2440 parB-like partition protein NP_742171.1 147 R 160488 CDS NP_742172.1 26986747 1043469 complement(1029..1820) 1 NC_002947.3 similar to GB:V00540, GB:J00212, GB:M12350, GB:M28586, GB:M10201, SP:P01568, SP:P05014, PID:184655, PID:306905, PID:306906, PID:306912, PID:32717, PID:32725, PID:758078, and PID:825603; identified by sequence similarity; ParA family protein 1820 1043469 PP_0002 Pseudomonas putida KT2440 ParA family protein NP_742172.1 1029 R 160488 CDS NP_742173.1 26986748 1043471 complement(1839..2489) 1 NC_002947.3 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 2489 gidB 1043471 gidB Pseudomonas putida KT2440 16S rRNA methyltransferase GidB NP_742173.1 1839 R 160488 CDS NP_742174.1 26986749 1043472 complement(2486..4381) 1 NC_002947.3 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 4381 gidA 1043472 gidA Pseudomonas putida KT2440 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA NP_742174.1 2486 R 160488 CDS NP_742175.1 26986750 1043475 complement(5012..6382) 1 NC_002947.3 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 6382 trmE 1043475 trmE Pseudomonas putida KT2440 tRNA modification GTPase TrmE NP_742175.1 5012 R 160488 CDS NP_742176.1 26986751 1043481 complement(6471..8153) 1 NC_002947.3 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 8153 yidC 1043481 yidC Pseudomonas putida KT2440 inner membrane protein translocase component YidC NP_742176.1 6471 R 160488 CDS NP_742177.1 26986752 1043483 complement(8156..8401) 1 NC_002947.3 similar to GB:L11566, SP:Q07020, PID:337493, GB:L11566, SP:Q07020, and PID:337493; identified by sequence similarity; hypothetical protein 8401 1043483 PP_0007 Pseudomonas putida KT2440 hypothetical protein NP_742177.1 8156 R 160488 CDS NP_742178.1 26986753 1043484 complement(8394..8798) 1 NC_002947.3 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 8798 rnpA 1043484 rnpA Pseudomonas putida KT2440 ribonuclease P NP_742178.1 8394 R 160488 CDS NP_742179.1 26986754 1043485 complement(8812..8946) 1 NC_002947.3 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 8946 rpmH 1043485 rpmH Pseudomonas putida KT2440 50S ribosomal protein L34 NP_742179.1 8812 R 160488 CDS NP_742180.1 26986755 1043486 9542..11062 1 NC_002947.3 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 11062 dnaA 1043486 dnaA Pseudomonas putida KT2440 chromosome replication initiator DnaA NP_742180.1 9542 D 160488 CDS NP_742181.1 26986756 1043487 11103..12206 1 NC_002947.3 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 12206 dnaN 1043487 dnaN Pseudomonas putida KT2440 DNA polymerase III subunit beta NP_742181.1 11103 D 160488 CDS NP_742182.1 26986757 1043488 12222..13325 1 NC_002947.3 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 13325 recF 1043488 recF Pseudomonas putida KT2440 recombination protein F NP_742182.1 12222 D 160488 CDS NP_742183.1 26986758 1043489 13330..15750 1 NC_002947.3 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 15750 gyrB 1043489 gyrB Pseudomonas putida KT2440 DNA gyrase subunit B NP_742183.1 13330 D 160488 CDS NP_742184.1 26986759 1043490 17133..19166 1 NC_002947.3 similar to GP:11071900; identified by sequence similarity; transposase 19166 1043490 PP_0014 Pseudomonas putida KT2440 transposase NP_742184.1 17133 D 160488 CDS NP_742185.1 26986760 1043491 19163..20122 1 NC_002947.3 ATPase AAA 20122 1043491 PP_0015 Pseudomonas putida KT2440 ATPase AAA NP_742185.1 19163 D 160488 CDS NP_742186.1 26986761 1043492 20198..22114 1 NC_002947.3 hypothetical protein 22114 1043492 PP_0016 Pseudomonas putida KT2440 hypothetical protein NP_742186.1 20198 D 160488 CDS NP_742187.1 26986762 1043493 22171..22530 1 NC_002947.3 transcriptional regulator MvaT, P16 subunit 22530 1043493 PP_0017 Pseudomonas putida KT2440 transcriptional regulator MvaT, P16 subunit NP_742187.1 22171 D 160488 CDS NP_742188.1 26986763 1043494 23176..24018 1 NC_002947.3 hypothetical protein 24018 1043494 PP_0018 Pseudomonas putida KT2440 hypothetical protein NP_742188.1 23176 D 160488 CDS NP_742189.1 26986764 1043495 24000..24698 1 NC_002947.3 hypothetical protein 24698 1043495 PP_0019 Pseudomonas putida KT2440 hypothetical protein NP_742189.1 24000 D 160488 CDS NP_742190.1 26986765 1043496 24695..25570 1 NC_002947.3 hypothetical protein 25570 1043496 PP_0020 Pseudomonas putida KT2440 hypothetical protein NP_742190.1 24695 D 160488 CDS NP_742191.1 26986766 1043497 25881..26804 1 NC_002947.3 hypothetical protein 26804 1043497 PP_0021 Pseudomonas putida KT2440 hypothetical protein NP_742191.1 25881 D 160488 CDS NP_742192.1 26986767 1043500 complement(26989..27390) 1 NC_002947.3 hypothetical protein 27390 1043500 PP_0022 Pseudomonas putida KT2440 hypothetical protein NP_742192.1 26989 R 160488 CDS NP_742193.1 26986768 1043502 complement(27599..27727) 1 NC_002947.3 hypothetical protein 27727 1043502 PP_0023 Pseudomonas putida KT2440 hypothetical protein NP_742193.1 27599 R 160488 CDS NP_742194.1 26986769 1043503 complement(27850..29547) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02418; hypothetical protein 29547 1043503 PP_0024 Pseudomonas putida KT2440 hypothetical protein NP_742194.1 27850 R 160488 CDS NP_742195.1 26986770 1043504 complement(29990..30142) 1 NC_002947.3 hypothetical protein 30142 1043504 PP_0025 Pseudomonas putida KT2440 hypothetical protein NP_742195.1 29990 R 160488 CDS NP_742196.1 26986771 1043505 30431..31336 1 NC_002947.3 similar to SP:P13512; identified by sequence similarity; CDF family cobalt/cadmium/zinc transporter 31336 1043505 PP_0026 Pseudomonas putida KT2440 CDF family cobalt/cadmium/zinc transporter NP_742196.1 30431 D 160488 CDS NP_742197.1 26986772 1043506 31404..31844 1 NC_002947.3 hypothetical protein 31844 1043506 PP_0027 Pseudomonas putida KT2440 hypothetical protein NP_742197.1 31404 D 160488 CDS NP_742198.1 26986773 1043507 complement(31877..32203) 1 NC_002947.3 similar to GP:12484570; identified by sequence similarity; hypothetical protein 32203 1043507 PP_0028 Pseudomonas putida KT2440 hypothetical protein NP_742198.1 31877 R 160488 CDS NP_742199.1 26986774 1043508 32893..33567 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01387; DNA-binding response regulator CzrR 33567 czrR-1 1043508 czrR-1 Pseudomonas putida KT2440 DNA-binding response regulator CzrR NP_742199.1 32893 D 160488 CDS NP_742200.1 26986775 1043509 33564..34982 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01386; sensor histidine kinase 34982 1043509 PP_0030 Pseudomonas putida KT2440 sensor histidine kinase NP_742200.1 33564 D 160488 CDS NP_742201.1 26986776 1043510 complement(35040..35627) 1 NC_002947.3 hypothetical protein 35627 1043510 PP_0031 Pseudomonas putida KT2440 hypothetical protein NP_742201.1 35040 R 160488 CDS NP_742202.1 26986777 1043512 35894..36115 1 NC_002947.3 hypothetical protein 36115 1043512 PP_0032 Pseudomonas putida KT2440 hypothetical protein NP_742202.1 35894 D 160488 CDS NP_742203.1 26986778 1043513 complement(36198..37652) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02366; sugar transferase 37652 1043513 PP_0033 Pseudomonas putida KT2440 sugar transferase NP_742203.1 36198 R 160488 CDS NP_742204.1 26986779 1043514 complement(37646..38629) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00535; ribonuclease III 38629 1043514 PP_0034 Pseudomonas putida KT2440 ribonuclease III NP_742204.1 37646 R 160488 CDS NP_742205.1 26986780 1043515 complement(38595..39014) 1 NC_002947.3 similar to SP:Q06206, GB:Z21940, and PID:287738; identified by sequence similarity; GtrA family protein 39014 1043515 PP_0035 Pseudomonas putida KT2440 GtrA family protein NP_742205.1 38595 R 160488 CDS NP_742206.1 26986781 1043516 39272..40240 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 40240 1043516 PP_0036 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_742206.1 39272 D 160488 CDS NP_742207.1 26986782 1043517 40469..41758 1 NC_002947.3 similar to GB:X63597, GB:M22616, SP:P14410, PID:338090, and PID:36645; identified by sequence similarity; phosphate-selective porin O and P 41758 oprP 1043517 oprP Pseudomonas putida KT2440 phosphate-selective porin O and P NP_742207.1 40469 D 160488 CDS NP_742208.1 26986783 1043518 41778..41912 1 NC_002947.3 hypothetical protein 41912 1043518 PP_0038 Pseudomonas putida KT2440 hypothetical protein NP_742208.1 41778 D 160488 CDS NP_742209.1 26986784 1043519 42057..43082 1 NC_002947.3 hypothetical protein 43082 1043519 PP_0039 Pseudomonas putida KT2440 hypothetical protein NP_742209.1 42057 D 160488 CDS NP_742210.1 26986785 1043520 43210..43434 1 NC_002947.3 hypothetical protein 43434 1043520 PP_0040 Pseudomonas putida KT2440 hypothetical protein NP_742210.1 43210 D 160488 CDS NP_742211.1 26986786 1043522 complement(43527..45524) 1 NC_002947.3 similar to GB:U13922, PID:549844, GB:J04456, GB:M57678, GB:D28452, GB:X15256, GB:X14829, GB:S44881, SP:P05163, SP:P09382, PID:184228, PID:23239, PID:307122, and PID:34343; identified by sequence similarity; heavy metal translocating P-type ATPase 45524 cadA-1 1043522 cadA-1 Pseudomonas putida KT2440 heavy metal translocating P-type ATPase NP_742211.1 43527 R 160488 CDS NP_742212.1 26986787 1043523 complement(45727..45939) 1 NC_002947.3 similar to GP:12484570; identified by sequence similarity; hypothetical protein 45939 1043523 PP_0042 Pseudomonas putida KT2440 hypothetical protein NP_742212.1 45727 R 160488 CDS NP_742213.1 26986788 1043524 complement(46213..49374) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04295; CzcA family cobalt/zinc/cadmium efflux transporter permease 49374 1043524 PP_0043 Pseudomonas putida KT2440 CzcA family cobalt/zinc/cadmium efflux transporter permease NP_742213.1 46213 R 160488 CDS NP_742214.1 26986789 1043525 complement(49399..50649) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01730; CzcB family cobalt/zinc/cadmium efflux transporter membrane fusion protein 50649 1043525 PP_0044 Pseudomonas putida KT2440 CzcB family cobalt/zinc/cadmium efflux transporter membrane fusion protein NP_742214.1 49399 R 160488 CDS NP_742215.1 26986790 1043526 complement(50718..51989) 1 NC_002947.3 similar to SP:P13509; identified by sequence similarity; CzcC family cobalt/zinc/cadmium efflux transporter outer membrane protein 51989 1043526 PP_0045 Pseudomonas putida KT2440 CzcC family cobalt/zinc/cadmium efflux transporter outer membrane protein NP_742215.1 50718 R 160488 CDS NP_742216.1 26986791 1043527 52394..53737 1 NC_002947.3 similar to GP:2645844; identified by sequence similarity; porin 53737 1043527 PP_0046 Pseudomonas putida KT2440 porin NP_742216.1 52394 D 160488 CDS NP_742217.1 26986792 1043528 54227..54901 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01387; DNA-binding heavy metal response regulator 54901 1043528 PP_0047 Pseudomonas putida KT2440 DNA-binding heavy metal response regulator NP_742217.1 54227 D 160488 CDS NP_742218.1 26986793 1043529 55019..55342 1 NC_002947.3 hypothetical protein 55342 1043529 PP_0048 Pseudomonas putida KT2440 hypothetical protein NP_742218.1 55019 D 160488 CDS NP_742219.1 26986794 1043530 complement(56161..57627) 1 NC_002947.3 hypothetical protein 57627 1043530 PP_0049 Pseudomonas putida KT2440 hypothetical protein NP_742219.1 56161 R 160488 CDS NP_742220.1 26986795 1043531 complement(58777..59184) 1 NC_002947.3 similar to GP:15074850; identified by sequence similarity; hypothetical protein 59184 1043531 PP_0050 Pseudomonas putida KT2440 hypothetical protein NP_742220.1 58777 R 160488 CDS NP_742221.1 26986796 1043532 complement(59316..60608) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02954; Fis family transcriptional regulator 60608 1043532 PP_0051 Pseudomonas putida KT2440 Fis family transcriptional regulator NP_742221.1 59316 R 160488 CDS NP_742222.1 26986797 1043533 60831..61715 1 NC_002947.3 identified by match to PFAM protein family HMM PF00753; beta-lactamase domain-containing protein 61715 1043533 PP_0052 Pseudomonas putida KT2440 beta-lactamase domain-containing protein NP_742222.1 60831 D 160488 CDS NP_742223.1 26986798 1043534 61756..63024 1 NC_002947.3 similar to GP:9948381; identified by sequence similarity; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 63024 1043534 PP_0053 Pseudomonas putida KT2440 FAD-dependent pyridine nucleotide-disulfide oxidoreductase NP_742223.1 61756 D 160488 CDS NP_742224.1 26986799 1043535 62982..63839 1 NC_002947.3 similar to GP:9949599, and GP:9949599; identified by sequence similarity; hypothetical protein 63839 1043535 PP_0054 Pseudomonas putida KT2440 hypothetical protein NP_742224.1 62982 D 160488 CDS NP_742225.1 26986800 1043536 complement(63828..64715) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 64715 1043536 PP_0055 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_742225.1 63828 R 160488 CDS NP_742226.1 26986801 1043537 64943..66595 1 NC_002947.3 identified by match to PFAM protein family HMM PF00732; GMC family oxidoreductase 66595 1043537 PP_0056 Pseudomonas putida KT2440 GMC family oxidoreductase NP_742226.1 64943 D 160488 CDS NP_742227.1 26986802 1043538 66693..68312 1 NC_002947.3 identified by match to PFAM protein family HMM PF00083; major facilitator family transporter 68312 1043538 PP_0057 Pseudomonas putida KT2440 major facilitator family transporter NP_742227.1 66693 D 160488 CDS NP_742228.1 26986803 1043539 complement(68487..69272) 1 NC_002947.3 similar to GP:11120074; identified by sequence similarity; phospholipid/glycerol acyltransferase 69272 1043539 PP_0058 Pseudomonas putida KT2440 phospholipid/glycerol acyltransferase NP_742228.1 68487 R 160488 CDS NP_742229.1 26986804 1043540 complement(69319..69846) 1 NC_002947.3 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 69846 1043540 PP_0059 Pseudomonas putida KT2440 D,D-heptose 1,7-bisphosphate phosphatase NP_742229.1 69319 R 160488 CDS NP_742230.1 26986805 1043541 complement(69850..71904) 1 NC_002947.3 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 71904 glyS 1043541 glyS Pseudomonas putida KT2440 glycyl-tRNA synthetase subunit beta NP_742230.1 69850 R 160488 CDS NP_742231.1 26986806 1043542 complement(71901..72848) 1 NC_002947.3 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 72848 glyQ 1043542 glyQ Pseudomonas putida KT2440 glycyl-tRNA synthetase subunit alpha NP_742231.1 71901 R 160488 CDS NP_742232.1 26986807 1043543 72932..73483 1 NC_002947.3 similar to SP:P05100; identified by sequence similarity; DNA-3-methyladenine glycosylase I 73483 tag 1043543 tag Pseudomonas putida KT2440 DNA-3-methyladenine glycosylase I NP_742232.1 72932 D 160488 CDS NP_742233.1 26986808 1043544 73525..74412 1 NC_002947.3 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 74412 1043544 PP_0063 Pseudomonas putida KT2440 lipid A biosynthesis lauroyl acyltransferase NP_742233.1 73525 D 160488 CDS NP_742234.1 26986809 1043545 complement(74510..74824) 1 NC_002947.3 similar to GP:9945834; identified by sequence similarity; hypothetical protein 74824 1043545 PP_0064 Pseudomonas putida KT2440 hypothetical protein NP_742234.1 74510 R 160488 CDS NP_742235.1 26986810 1043546 complement(74836..76209) 1 NC_002947.3 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 76209 trkA 1043546 trkA Pseudomonas putida KT2440 potassium transporter peripheral membrane protein NP_742235.1 74836 R 160488 CDS NP_742236.1 26986811 1043547 complement(76233..77543) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01189; sun protein 77543 sun 1043547 sun Pseudomonas putida KT2440 sun protein NP_742236.1 76233 R 160488 CDS NP_742237.1 26986812 1043548 complement(77540..78472) 1 NC_002947.3 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 78472 fmt 1043548 fmt Pseudomonas putida KT2440 methionyl-tRNA formyltransferase NP_742237.1 77540 R 160488 CDS NP_742238.1 26986813 1043549 complement(78533..79039) 1 NC_002947.3 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 79039 def 1043549 def Pseudomonas putida KT2440 peptide deformylase NP_742238.1 78533 R 160488 CDS NP_742239.1 26986814 1043550 79246..80343 1 NC_002947.3 similar to GP:9945840, GB:L29642, and PID:461402; identified by sequence similarity; DNA protecting protein DprA 80343 1043550 PP_0069 Pseudomonas putida KT2440 DNA protecting protein DprA NP_742239.1 79246 D 160488 CDS NP_742240.1 26986815 1043551 80386..80943 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 80943 1043551 PP_0070 Pseudomonas putida KT2440 Sua5/YciO/YrdC/YwlC family protein NP_742240.1 80386 D 160488 CDS NP_742241.1 26986816 1043552 81562..82023 1 NC_002947.3 hypothetical protein 82023 1043552 PP_0071 Pseudomonas putida KT2440 hypothetical protein NP_742241.1 81562 D 160488 CDS NP_742242.1 26986817 1043553 complement(82151..83128) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01751; quinone oxidoreductase 83128 qor-1 1043553 qor-1 Pseudomonas putida KT2440 quinone oxidoreductase NP_742242.1 82151 R 160488 CDS NP_742243.1 26986818 1043554 83261..84172 1 NC_002947.3 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 84172 hemF 1043554 hemF Pseudomonas putida KT2440 coproporphyrinogen III oxidase NP_742243.1 83261 D 160488 CDS NP_742244.1 26986819 1043555 84198..85022 1 NC_002947.3 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 85022 aroE 1043555 aroE Pseudomonas putida KT2440 shikimate 5-dehydrogenase NP_742244.1 84198 D 160488 CDS NP_742245.1 26986820 1043556 complement(85152..86717) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04235; sulfate transporter 86717 1043556 PP_0075 Pseudomonas putida KT2440 sulfate transporter NP_742245.1 85152 R 160488 CDS NP_742246.1 26986821 1043557 complement(86861..87802) 1 NC_002947.3 similar to GP:9945850; identified by sequence similarity; glycine/betaine-binding protein 87802 1043557 PP_0076 Pseudomonas putida KT2440 glycine/betaine-binding protein NP_742246.1 86861 R 160488 CDS NP_742247.1 26986822 1043558 complement(87799..89316) 1 NC_002947.3 similar to SP:O69787; identified by sequence similarity; choline sulfatase 89316 betC 1043558 betC Pseudomonas putida KT2440 choline sulfatase NP_742247.1 87799 R 160488 CDS NP_742248.1 26986823 1043559 89315..89416 1 NC_002947.3 hypothetical protein 89416 1043559 PP_0078 Pseudomonas putida KT2440 hypothetical protein NP_742248.1 89315 D 160488 CDS NP_742249.1 26986824 1043560 89425..90324 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 90324 1043560 PP_0079 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_742249.1 89425 D 160488 CDS NP_742250.1 26986825 1043561 complement(90446..91063) 1 NC_002947.3 similar to GP:9948196; identified by sequence similarity; hypothetical protein 91063 1043561 PP_0080 Pseudomonas putida KT2440 hypothetical protein NP_742250.1 90446 R 160488 CDS NP_742251.1 26986826 1043562 91077..91448 1 NC_002947.3 similar to SP:P56739; identified by sequence similarity; hypothetical protein 91448 1043562 PP_0081 Pseudomonas putida KT2440 hypothetical protein NP_742251.1 91077 D 160488 CDS NP_742252.1 26986827 1043563 complement(91569..92378) 1 NC_002947.3 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 92378 trpA 1043563 trpA Pseudomonas putida KT2440 tryptophan synthase subunit alpha NP_742252.1 91569 R 160488 CDS NP_742253.1 26986828 1043564 complement(92375..93592) 1 NC_002947.3 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 93592 trpB 1043564 trpB Pseudomonas putida KT2440 tryptophan synthase subunit beta NP_742253.1 92375 R 160488 CDS NP_742254.1 26986829 1043565 93703..94599 1 NC_002947.3 similar to GB:X13589, GB:Y07508, GB:M22246, GB:S85356, GB:M74714, GB:J04127, GB:M30795, GB:M30796, GB:M30797, GB:M30798, GB:M30799, GB:M30800, GB:M30801, GB:M30802, GB:M30803, GB:M30804, GB:M18856, GB:M28420, GB:S58866, GB:S85075, GB:S52793, GB:M32245, GB:X55983, GB:D14473, GB:S67206, GB:L21982, GB:S52789, SP:P11511, GB:X13589, GB:Y07508, GB:M22246, GB:S85356, GB:M74714, GB:J04127, GB:M30795, GB:M30796, GB:M30797, GB:M30798, GB:M30799, GB:M30800, GB:M30801, GB:M30802, GB:M30803, GB:M30804, GB:M18856, GB:M28420, GB:S58866, GB:S85075, GB:S52793, GB:M32245, GB:X55983, GB:D14473, GB:S67206, GB:L21982, GB:S52789, and SP:P11511; identified by sequence similarity; LysR family transcriptional regulator 94599 trpI 1043565 trpI Pseudomonas putida KT2440 LysR family transcriptional regulator NP_742254.1 93703 D 160488 CDS NP_742255.1 26986830 1043566 complement(94596..95084) 1 NC_002947.3 similar to GB:L05186, GB:L13616, SP:Q05397, PID:439875, GB:L05186, GB:L13616, SP:Q05397, and PID:439875; identified by sequence similarity; hypothetical protein 95084 1043566 PP_0085 Pseudomonas putida KT2440 hypothetical protein NP_742255.1 94596 R 160488 CDS NP_742256.1 26986831 1043567 95070..95285 1 NC_002947.3 similar to GP:9945859; identified by sequence similarity; hypothetical protein 95285 1043567 PP_0086 Pseudomonas putida KT2440 hypothetical protein NP_742256.1 95070 D 160488 CDS NP_742257.1 26986832 1043568 95344..95607 1 NC_002947.3 similar to GP:9945860; identified by sequence similarity; hypothetical protein 95607 1043568 PP_0087 Pseudomonas putida KT2440 hypothetical protein NP_742257.1 95344 D 160488 CDS NP_742258.1 26986833 1043569 complement(95679..96683) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00296; luciferase 96683 1043569 PP_0088 Pseudomonas putida KT2440 luciferase NP_742258.1 95679 R 160488 CDS NP_742259.1 26986834 1043570 96836..97261 1 NC_002947.3 similar to SP:P23929; identified by sequence similarity; OsmC family protein 97261 osmC 1043570 osmC Pseudomonas putida KT2440 OsmC family protein NP_742259.1 96836 D 160488 CDS NP_742260.1 26986835 1043571 97274..97570 1 NC_002947.3 hypothetical protein 97570 1043571 PP_0090 Pseudomonas putida KT2440 hypothetical protein NP_742260.1 97274 D 160488 CDS NP_742261.1 26986836 1043573 complement(97606..98019) 1 NC_002947.3 lipoprotein 98019 1043573 PP_0091 Pseudomonas putida KT2440 lipoprotein NP_742261.1 97606 R 160488 CDS NP_742262.1 26986837 1043574 complement(98075..98488) 1 NC_002947.3 lipoprotein 98488 1043574 PP_0092 Pseudomonas putida KT2440 lipoprotein NP_742262.1 98075 R 160488 CDS NP_742263.1 26986838 1043575 98487..99650 1 NC_002947.3 similar to GP:9945887; identified by sequence similarity; hypothetical protein 99650 1043575 PP_0093 Pseudomonas putida KT2440 hypothetical protein NP_742263.1 98487 D 160488 CDS NP_742264.1 26986839 1043576 complement(99757..100407) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01454; HAD superfamily hydrolase 100407 1043576 PP_0094 Pseudomonas putida KT2440 HAD superfamily hydrolase NP_742264.1 99757 R 160488 CDS NP_742265.1 26986840 1043577 complement(100529..101077) 1 NC_002947.3 similar to GP:9945890; identified by sequence similarity; anhydrase 3 protein 101077 1043577 PP_0095 Pseudomonas putida KT2440 anhydrase 3 protein NP_742265.1 100529 R 160488 CDS NP_742266.1 26986841 1043578 101180..103231 1 NC_002947.3 similar to GB:X51956, GB:M22349, GB:X13120, GB:X14327, SP:P06733, SP:P09104, SP:P13929, SP:Q05524, PID:1732416, PID:182116, PID:182118, PID:31165, PID:693933, PID:930063, and PID:930101; identified by sequence similarity; oligopeptidase A 103231 prlC 1043578 prlC Pseudomonas putida KT2440 oligopeptidase A NP_742266.1 101180 D 160488 CDS NP_742267.1 26986842 1043579 103228..103509 1 NC_002947.3 similar to GP:9945892, and GP:9945892; identified by sequence similarity; hypothetical protein 103509 1043579 PP_0097 Pseudomonas putida KT2440 hypothetical protein NP_742267.1 103228 D 160488 CDS NP_742268.1 26986843 1043580 103528..103701 1 NC_002947.3 similar to GB:U20657, and SP:Q13107; identified by sequence similarity; hypothetical protein 103701 1043580 PP_0098 Pseudomonas putida KT2440 hypothetical protein NP_742268.1 103528 D 160488 CDS NP_742269.1 26986844 1043581 103841..104899 1 NC_002947.3 identified by match to PFAM protein family HMM PF04055; radical SAM domain-containing protein 104899 1043581 PP_0099 Pseudomonas putida KT2440 radical SAM domain-containing protein NP_742269.1 103841 D 160488 CDS NP_742270.1 26986845 1043582 105206..105925 1 NC_002947.3 identified by match to PFAM protein family HMM PF00484; carbonate dehydratase 105925 cynT 1043582 cynT Pseudomonas putida KT2440 carbonate dehydratase NP_742270.1 105206 D 160488 CDS NP_742271.1 26986846 1043583 106133..107650 1 NC_002947.3 identified by match to PFAM protein family HMM PF04172; sulfate transporter 107650 1043583 PP_0101 Pseudomonas putida KT2440 sulfate transporter NP_742271.1 106133 D 160488 CDS NP_742272.1 26986847 1043585 107786..108676 1 NC_002947.3 similar to GP:9945931; identified by sequence similarity; hypothetical protein 108676 1043585 PP_0102 Pseudomonas putida KT2440 hypothetical protein NP_742272.1 107786 D 160488 CDS NP_742273.1 26986848 1043588 108809..109936 1 NC_002947.3 identified by match to PFAM protein family HMM PF00034; cytochrome c oxidase subunit II 109936 1043588 PP_0103 Pseudomonas putida KT2440 cytochrome c oxidase subunit II NP_742273.1 108809 D 160488 CDS NP_742274.1 26986849 1043590 109980..111569 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00780; cytochrome c oxidase subunit I 111569 1043590 PP_0104 Pseudomonas putida KT2440 cytochrome c oxidase subunit I NP_742274.1 109980 D 160488 CDS NP_742275.1 26986850 1043591 111579..112145 1 NC_002947.3 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 112145 1043591 PP_0105 Pseudomonas putida KT2440 cytochrome C oxidase assembly protein NP_742275.1 111579 D 160488 CDS NP_742276.1 26986851 1043592 112162..113049 1 NC_002947.3 identified by match to PFAM protein family HMM PF04238; cytochrome c oxidase subunit III 113049 1043592 PP_0106 Pseudomonas putida KT2440 cytochrome c oxidase subunit III NP_742276.1 112162 D 160488 CDS NP_742277.1 26986852 1043593 113072..114073 1 NC_002947.3 hypothetical protein 114073 1043593 PP_0107 Pseudomonas putida KT2440 hypothetical protein NP_742277.1 113072 D 160488 CDS NP_742278.1 26986853 1043596 114042..114623 1 NC_002947.3 similar to GP:9945938; identified by sequence similarity; hypothetical protein 114623 1043596 PP_0108 Pseudomonas putida KT2440 hypothetical protein NP_742278.1 114042 D 160488 CDS NP_742279.1 26986854 1043598 114633..115712 1 NC_002947.3 similar to GP:9945939; identified by sequence similarity; cytochrome oxidase assembly 115712 1043598 PP_0109 Pseudomonas putida KT2440 cytochrome oxidase assembly NP_742279.1 114633 D 160488 CDS NP_742280.1 26986855 1043599 115697..116590 1 NC_002947.3 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 116590 cyoE-1 1043599 cyoE-1 Pseudomonas putida KT2440 protoheme IX farnesyltransferase NP_742280.1 115697 D 160488 CDS NP_742281.1 26986856 1043600 116587..117219 1 NC_002947.3 identified by match to PFAM protein family HMM PF00578; electron transport protein SCO1/SenC 117219 1043600 PP_0111 Pseudomonas putida KT2440 electron transport protein SCO1/SenC NP_742281.1 116587 D 160488 CDS NP_742282.1 26986857 1043602 complement(117313..118083) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03180; metal ABC transporter substrate-binding protein 118083 1043602 PP_0112 Pseudomonas putida KT2440 metal ABC transporter substrate-binding protein NP_742282.1 117313 R 160488 CDS NP_742283.1 26986858 1043604 complement(118148..118819) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01726; ABC transporter permease 118819 1043604 PP_0113 Pseudomonas putida KT2440 ABC transporter permease NP_742283.1 118148 R 160488 CDS NP_742284.1 26986859 1043605 complement(118819..119826) 1 NC_002947.3 part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 119826 metN 1043605 metN Pseudomonas putida KT2440 DL-methionine transporter ATP-binding subunit NP_742284.1 118819 R 160488 CDS NP_742285.1 26986860 1043606 120054..122189 1 NC_002947.3 Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; hydroperoxidase II 122189 katE 1043606 katE Pseudomonas putida KT2440 hydroperoxidase II NP_742285.1 120054 D 160488 CDS NP_742286.1 26986861 1043607 complement(122250..122957) 1 NC_002947.3 similar to GP:9951837; identified by sequence similarity; lipoprotein 122957 1043607 PP_0116 Pseudomonas putida KT2440 lipoprotein NP_742286.1 122250 R 160488 CDS NP_742287.1 26986862 1043608 complement(123084..123866) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01032; hypothetical protein 123866 znuB 1043608 znuB Pseudomonas putida KT2440 hypothetical protein NP_742287.1 123084 R 160488 CDS NP_742288.1 26986863 1043610 complement(123859..124632) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00968; zinc ABC transporter ATP-binding protein 124632 znuC 1043610 znuC Pseudomonas putida KT2440 zinc ABC transporter ATP-binding protein NP_742288.1 123859 R 160488 CDS NP_742289.1 26986864 1043612 complement(124629..125036) 1 NC_002947.3 similar to GP:9951834; identified by sequence similarity; FUR family transcriptional regulator 125036 1043612 PP_0119 Pseudomonas putida KT2440 FUR family transcriptional regulator NP_742289.1 124629 R 160488 CDS NP_742290.1 26986865 1043613 125181..126089 1 NC_002947.3 similar to SP:P18840, PID:145279, GB:U00096, PID:1742878, and PID:1788065; identified by sequence similarity; ABC transporter substrate-binding protein 126089 1043613 PP_0120 Pseudomonas putida KT2440 ABC transporter substrate-binding protein NP_742290.1 125181 D 160488 CDS NP_742291.1 26986866 1043614 complement(126139..127089) 1 NC_002947.3 catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase 127089 thrB 1043614 thrB Pseudomonas putida KT2440 homoserine kinase NP_742291.1 126139 R 160488 CDS NP_742292.1 26986867 1043615 complement(127159..127446) 1 NC_002947.3 hypothetical protein 127446 1043615 PP_0122 Pseudomonas putida KT2440 hypothetical protein NP_742292.1 127159 R 160488 CDS NP_742293.1 26986868 1043618 127522..130269 1 NC_002947.3 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 130269 polA 1043618 polA Pseudomonas putida KT2440 DNA polymerase I NP_742293.1 127522 D 160488 CDS NP_742294.1 26986869 1043619 complement(130640..131272) 1 NC_002947.3 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 131272 engB 1043619 engB Pseudomonas putida KT2440 ribosome biogenesis GTP-binding protein YsxC NP_742294.1 130640 R 160488 CDS NP_742295.1 26986870 1043620 131474..131776 1 NC_002947.3 similar to GP:9951825; identified by sequence similarity; cytochrome c-type protein 131776 1043620 PP_0125 Pseudomonas putida KT2440 cytochrome c-type protein NP_742295.1 131474 D 160488 CDS NP_742296.1 26986871 1043621 131808..132425 1 NC_002947.3 similar to GB:M25322, GB:M60218, GB:M60219, GB:M60222, GB:M60223, GB:M60224, GB:M60225, GB:M60226, GB:M60227, GB:M60228, GB:M60229, GB:M60230, GB:M60231, GB:M60232, GB:M60233, GB:M60234, GB:M60235, SP:P16109, PID:183389, and PID:183391; identified by sequence similarity; cytochrome c4 132425 1043621 PP_0126 Pseudomonas putida KT2440 cytochrome c4 NP_742296.1 131808 D 160488 CDS NP_742297.1 26986872 1043624 132577..133209 1 NC_002947.3 similar to GP:2707768; identified by sequence similarity; DsbA family thiol:disulfide interchange protein 133209 1043624 PP_0127 Pseudomonas putida KT2440 DsbA family thiol:disulfide interchange protein NP_742297.1 132577 D 160488 CDS NP_742298.1 26986873 1043625 133222..134076 1 NC_002947.3 identified by match to PFAM protein family HMM PF03372; hypothetical protein 134076 1043625 PP_0128 Pseudomonas putida KT2440 hypothetical protein NP_742298.1 133222 D 160488 CDS NP_742299.1 26986874 1043626 134104..136041 1 NC_002947.3 identified by match to PFAM protein family HMM PF04156; diguanylate cyclase 136041 1043626 PP_0129 Pseudomonas putida KT2440 diguanylate cyclase NP_742299.1 134104 D 160488 CDS NP_742300.1 26986875 1043628 136115..136903 1 NC_002947.3 identified by match to PFAM protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase 136903 1043628 PP_0130 Pseudomonas putida KT2440 N-acetylmuramoyl-L-alanine amidase NP_742300.1 136115 D 160488 CDS NP_742301.1 26986876 1043629 137099..138706 1 NC_002947.3 identified by match to PFAM protein family HMM PF00563; diguanylate phosphodiesterase 138706 1043629 PP_0131 Pseudomonas putida KT2440 diguanylate phosphodiesterase NP_742301.1 137099 D 160488 CDS NP_742302.1 26986877 1043632 complement(138721..140502) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00512; multi-sensor signal transduction histidine kinase 140502 1043632 PP_0132 Pseudomonas putida KT2440 multi-sensor signal transduction histidine kinase NP_742302.1 138721 R 160488 CDS NP_742303.1 26986878 1043633 complement(140499..141845) 1 NC_002947.3 similar to GB:X12966, GB:X14813, GB:X65140, SP:P09110, PID:1340140, PID:23874, PID:23876, PID:825617, GB:X12966, GB:X14813, GB:X65140, SP:P09110, PID:1340140, PID:23874, PID:23876, and PID:825617; identified by sequence similarity; Fis family transcriptional regulator 141845 algB 1043633 algB Pseudomonas putida KT2440 Fis family transcriptional regulator NP_742303.1 140499 R 160488 CDS NP_742304.1 26986879 1043634 142056..142877 1 NC_002947.3 similar to GB:M18731, and PID:182949; identified by sequence similarity; transport-associated protein 142877 1043634 PP_0134 Pseudomonas putida KT2440 transport-associated protein NP_742304.1 142056 D 160488 CDS NP_742305.1 26986880 1043635 143386..143547 1 NC_002947.3 hypothetical protein 143547 1043635 PP_0135 Pseudomonas putida KT2440 hypothetical protein NP_742305.1 143386 D 160488 CDS NP_742306.1 26986881 1043636 143550..144020 1 NC_002947.3 similar to GP:9950084; identified by sequence similarity; inhibitor of vertebrate lysozyme 144020 1043636 PP_0136 Pseudomonas putida KT2440 inhibitor of vertebrate lysozyme NP_742306.1 143550 D 160488 CDS NP_742307.1 26986882 1043638 144766..146094 1 NC_002947.3 carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system; glutamate/aspartate:proton symporter 146094 gltP 1043638 gltP Pseudomonas putida KT2440 glutamate/aspartate:proton symporter NP_742307.1 144766 D 160488 CDS NP_742308.1 26986883 1043641 146242..147471 1 NC_002947.3 identified by match to PFAM protein family HMM PF04291; nucleoside recognition domain-containing protein 147471 1043641 PP_0138 Pseudomonas putida KT2440 nucleoside recognition domain-containing protein NP_742308.1 146242 D 160488 CDS NP_742309.1 26986884 1043642 complement(147453..148088) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03550; lipoprotein 148088 1043642 PP_0139 Pseudomonas putida KT2440 lipoprotein NP_742309.1 147453 R 160488 CDS NP_742310.1 26986885 1043644 complement(148085..149023) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00996; hypothetical protein 149023 1043644 PP_0140 Pseudomonas putida KT2440 hypothetical protein NP_742310.1 148085 R 160488 CDS NP_742311.1 26986886 1043646 complement(149027..149818) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00968; ABC transporter ATP-binding protein 149818 1043646 PP_0141 Pseudomonas putida KT2440 ABC transporter ATP-binding protein NP_742311.1 149027 R 160488 CDS NP_742312.1 26986887 1043647 complement(149815..150948) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02405; hypothetical protein 150948 1043647 PP_0142 Pseudomonas putida KT2440 hypothetical protein NP_742312.1 149815 R 160488 CDS NP_742313.1 26986888 1043648 complement(151080..152105) 1 NC_002947.3 similar to GP:9951810; identified by sequence similarity; hypothetical protein 152105 1043648 PP_0143 Pseudomonas putida KT2440 hypothetical protein NP_742313.1 151080 R 160488 CDS NP_742314.1 26986889 1043652 complement(152199..153605) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00675; insulinase metalloprotease 153605 1043652 PP_0144 Pseudomonas putida KT2440 insulinase metalloprotease NP_742314.1 152199 R 160488 CDS NP_742315.1 26986890 1043653 complement(153636..155294) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04284; sodium-dependent inorganic phosphate (Pi) transporter 155294 1043653 PP_0145 Pseudomonas putida KT2440 sodium-dependent inorganic phosphate (Pi) transporter NP_742315.1 153636 R 160488 CDS NP_742316.1 26986891 1043654 complement(155577..156374) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03741; integral membrane protein TerC 156374 1043654 PP_0146 Pseudomonas putida KT2440 integral membrane protein TerC NP_742316.1 155577 R 160488 CDS NP_742317.1 26986892 1043655 complement(156417..157724) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03600; citrate transporter 157724 1043655 PP_0147 Pseudomonas putida KT2440 citrate transporter NP_742317.1 156417 R 160488 CDS NP_742318.1 26986893 1043656 157989..158393 1 NC_002947.3 hypothetical protein 158393 1043656 PP_0148 Pseudomonas putida KT2440 hypothetical protein NP_742318.1 157989 D 160488 CDS NP_742319.1 26986894 1043657 complement(158432..160387) 1 NC_002947.3 similar to GP:9951796; identified by sequence similarity; hypothetical protein 160387 1043657 PP_0149 Pseudomonas putida KT2440 hypothetical protein NP_742319.1 158432 R 160488 CDS NP_742320.1 26986895 1043658 complement(160384..160704) 1 NC_002947.3 hypothetical protein 160704 1043658 PP_0150 Pseudomonas putida KT2440 hypothetical protein NP_742320.1 160384 R 160488 CDS NP_742321.1 26986896 1043659 complement(160741..161034) 1 NC_002947.3 similar to GP:9951794; identified by sequence similarity; hypothetical protein 161034 1043659 PP_0151 Pseudomonas putida KT2440 hypothetical protein NP_742321.1 160741 R 160488 CDS NP_742322.1 26986897 1043661 complement(161124..161504) 1 NC_002947.3 similar to GP:9951793; identified by sequence similarity; hypothetical protein 161504 1043661 PP_0152 Pseudomonas putida KT2440 hypothetical protein NP_742322.1 161124 R 160488 CDS NP_742323.1 26986898 1043664 complement(161750..161965) 1 NC_002947.3 hypothetical protein 161965 1043664 PP_0153 Pseudomonas putida KT2440 hypothetical protein NP_742323.1 161750 R 160488 CDS NP_742324.1 26986899 1043665 complement(162339..163832) 1 NC_002947.3 similar to GP:3249555; identified by sequence similarity; acetyl-CoA hydrolase/transferase 163832 1043665 PP_0154 Pseudomonas putida KT2440 acetyl-CoA hydrolase/transferase NP_742324.1 162339 R 160488 CDS NP_742325.1 26986900 1043667 complement(164019..165455) 1 NC_002947.3 similar to GB:L15189, GB:L11066, GB:D17027, GB:D17196, SP:P38646, and PID:292059; identified by sequence similarity; NAD(P)(+) transhydrogenase 165455 pntB 1043667 pntB Pseudomonas putida KT2440 NAD(P)(+) transhydrogenase NP_742325.1 164019 R 160488 CDS NP_742326.1 26986901 1043670 complement(167324..168241) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 168241 1043670 PP_0157 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_742326.1 167324 R 160488 CDS NP_742327.1 26986902 1043671 168402..169583 1 NC_002947.3 identified by match to PFAM protein family HMM PF00441; acyl-CoA dehydrogenase 169583 gcdH 1043671 gcdH Pseudomonas putida KT2440 acyl-CoA dehydrogenase NP_742327.1 168402 D 160488 CDS NP_742328.1 26986903 1043672 169597..170817 1 NC_002947.3 identified by match to PFAM protein family HMM PF02515; CAIB/BAIF family protein 170817 1043672 PP_0159 Pseudomonas putida KT2440 CAIB/BAIF family protein NP_742328.1 169597 D 160488 CDS NP_742329.1 26986904 1043683 complement(182074..184560) 1 NC_002947.3 similar to GB:M13295, GB:M13296, GB:M13297, GB:M13298, GB:M13299, SP:P03999, PID:180685, and PID:2138076; identified by sequence similarity; TonB-dependent siderophore receptor 184560 1043683 PP_0160 Pseudomonas putida KT2440 TonB-dependent siderophore receptor NP_742329.1 182074 R 160488 CDS NP_742330.1 26986905 1043684 complement(184654..185610) 1 NC_002947.3 similar to GP:9948517; identified by sequence similarity; FecR anti-FecI sigma factor 185610 1043684 PP_0161 Pseudomonas putida KT2440 FecR anti-FecI sigma factor NP_742330.1 184654 R 160488 CDS NP_742331.1 26986906 1043685 complement(185615..186136) 1 NC_002947.3 ECF subfamily RNA polymerase sigma factor 186136 1043685 PP_0162 Pseudomonas putida KT2440 ECF subfamily RNA polymerase sigma factor NP_742331.1 185615 R 160488 CDS NP_742332.1 26986907 1043686 complement(186225..186914) 1 NC_002947.3 similar to GP:9947202; identified by sequence similarity; GntR family transcriptional regulator 186914 1043686 PP_0163 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_742332.1 186225 R 160488 CDS NP_742333.1 26986908 1043687 187239..187880 1 NC_002947.3 hypothetical protein 187880 1043687 PP_0164 Pseudomonas putida KT2440 hypothetical protein NP_742333.1 187239 D 160488 CDS NP_742334.1 26986909 1043688 187891..189837 1 NC_002947.3 identified by match to PFAM protein family HMM PF00563; diguanylate cyclase 189837 1043688 PP_0165 Pseudomonas putida KT2440 diguanylate cyclase NP_742334.1 187891 D 160488 CDS NP_742335.1 26986910 1043690 complement(189994..191370) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00998; HlyD family type I secretion membrane fusion protein 191370 1043690 PP_0166 Pseudomonas putida KT2440 HlyD family type I secretion membrane fusion protein NP_742335.1 189994 R 160488 CDS NP_742336.1 26986911 1043691 complement(191360..193516) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00968; toxin secretion ATP-binding protein 193516 1043691 PP_0167 Pseudomonas putida KT2440 toxin secretion ATP-binding protein NP_742336.1 191360 R 160488 CDS NP_742337.1 26986912 1043692 194494..220542 1 NC_002947.3 similar to GP:7741585, and GP:7741585; identified by sequence similarity; surface adhesion protein 220542 1043692 PP_0168 Pseudomonas putida KT2440 surface adhesion protein NP_742337.1 194494 D 160488 CDS NP_742338.1 26986913 1043693 221228..222127 1 NC_002947.3 similar to SP:P10088; identified by sequence similarity; TauD/TfdA family dioxygenase 222127 1043693 PP_0169 Pseudomonas putida KT2440 TauD/TfdA family dioxygenase NP_742338.1 221228 D 160488 CDS NP_742339.1 26986914 1043695 222145..223164 1 NC_002947.3 identified by match to PFAM protein family HMM PF04069; ABC transporter substrate-binding protein 223164 1043695 PP_0170 Pseudomonas putida KT2440 ABC transporter substrate-binding protein NP_742339.1 222145 D 160488 CDS NP_742340.1 26986915 1043696 223171..224034 1 NC_002947.3 identified by match to PFAM protein family HMM PF00005; ABC transporter ATP-binding protein 224034 1043696 PP_0171 Pseudomonas putida KT2440 ABC transporter ATP-binding protein NP_742340.1 223171 D 160488 CDS NP_742341.1 26986916 1043698 224049..224912 1 NC_002947.3 similar to SP:P75851; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein 224912 1043698 PP_0172 Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_742341.1 224049 D 160488 CDS NP_742342.1 26986917 1043699 complement(225030..225659) 1 NC_002947.3 similar to GP:6642785; identified by sequence similarity; transcriptional factor-like protein 225659 1043699 PP_0173 Pseudomonas putida KT2440 transcriptional factor-like protein NP_742342.1 225030 R 160488 CDS NP_742343.1 26986918 1043700 225774..226592 1 NC_002947.3 similar to GB:L19657, GB:Y00525, PID:459864, and SP:P21484; identified by sequence similarity; Sel1 domain-containing protein repeat-containing protein 226592 1043700 PP_0174 Pseudomonas putida KT2440 Sel1 domain-containing protein repeat-containing protein NP_742343.1 225774 D 160488 CDS NP_742344.1 26986919 1043701 226725..227177 1 NC_002947.3 identified by match to PFAM protein family HMM PF03551; MarR family transcriptional regulator 227177 1043701 PP_0175 Pseudomonas putida KT2440 MarR family transcriptional regulator NP_742344.1 226725 D 160488 CDS NP_742345.1 26986920 1043702 227174..229261 1 NC_002947.3 fusaric acid resistance protein 229261 1043702 PP_0176 Pseudomonas putida KT2440 fusaric acid resistance protein NP_742345.1 227174 D 160488 CDS NP_742346.1 26986921 1043703 229258..229470 1 NC_002947.3 similar to GB:M23114, GB:M23116, GB:M23278, GB:M23115, SP:P16614, SP:P16615, PID:306850, PID:306851, and PID:567108; identified by sequence similarity; hypothetical protein 229470 1043703 PP_0177 Pseudomonas putida KT2440 hypothetical protein NP_742346.1 229258 D 160488 CDS NP_742347.1 26986922 1043704 229467..230342 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01730; secretion protein HlyD family protein 230342 1043704 PP_0178 Pseudomonas putida KT2440 secretion protein HlyD family protein NP_742347.1 229467 D 160488 CDS NP_742348.1 26986923 1043705 230339..231757 1 NC_002947.3 identified by match to PFAM protein family HMM PF02321; RND efflux transporter 231757 1043705 PP_0179 Pseudomonas putida KT2440 RND efflux transporter NP_742348.1 230339 D 160488 CDS NP_742349.1 26986924 1043706 231901..233811 1 NC_002947.3 identified by match to PFAM protein family HMM PF03675; cytochrome c family protein 233811 1043706 PP_0180 Pseudomonas putida KT2440 cytochrome c family protein NP_742349.1 231901 D 160488 CDS NP_742350.1 26986925 1043707 complement(233874..234119) 1 NC_002947.3 hypothetical protein 234119 1043707 PP_0181 Pseudomonas putida KT2440 hypothetical protein NP_742350.1 233874 R 160488 CDS NP_742351.1 26986926 1043708 complement(234189..234491) 1 NC_002947.3 hypothetical protein 234491 1043708 PP_0182 Pseudomonas putida KT2440 hypothetical protein NP_742351.1 234189 R 160488 CDS NP_742352.1 26986927 1043709 234640..235302 1 NC_002947.3 similar to GP:3980387; identified by sequence similarity; glutathione S-transferase 235302 1043709 PP_0183 Pseudomonas putida KT2440 glutathione S-transferase NP_742352.1 234640 D 160488 CDS NP_742353.1 26986928 1043710 complement(235427..236833) 1 NC_002947.3 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 236833 argH 1043710 argH Pseudomonas putida KT2440 argininosuccinate lyase NP_742353.1 235427 R 160488 CDS NP_742354.1 26986929 1043711 237119..237862 1 NC_002947.3 similar to GB:U09067, PID:483876, PID:553456, GB:U09067, PID:483876, and PID:553456; identified by sequence similarity; LytTR family two component transcriptional regulator 237862 pprA 1043711 pprA Pseudomonas putida KT2440 LytTR family two component transcriptional regulator NP_742354.1 237119 D 160488 CDS NP_742355.1 26986930 1043712 237981..238922 1 NC_002947.3 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 238922 hemC 1043712 hemC Pseudomonas putida KT2440 porphobilinogen deaminase NP_742355.1 237981 D 160488 CDS NP_742356.1 26986931 1043713 238919..239686 1 NC_002947.3 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; uroporphyrinogen-III synthase 239686 hemD 1043713 hemD Pseudomonas putida KT2440 uroporphyrinogen-III synthase NP_742356.1 238919 D 160488 CDS NP_742357.1 26986932 1043714 239705..240832 1 NC_002947.3 similar to GB:M55406, SP:Q02505, and PID:553594; identified by sequence similarity; uroporphyrin-III C-methyltransferase 240832 1043714 PP_0188 Pseudomonas putida KT2440 uroporphyrin-III C-methyltransferase NP_742357.1 239705 D 160488 CDS NP_742358.1 26986933 1043715 240829..242067 1 NC_002947.3 similar to GB:J03191, SP:P07737, and PID:190386; identified by sequence similarity; HemY domain-containing protein 242067 hemY 1043715 hemY Pseudomonas putida KT2440 HemY domain-containing protein NP_742358.1 240829 D 160488 CDS NP_742359.1 26986934 1043716 242290..242796 1 NC_002947.3 similar to GB:L07648, GB:S78470, SP:P50539, PID:506627, and PID:976225; identified by sequence similarity; disulfide bond formation protein DsbB 242796 1043716 PP_0190 Pseudomonas putida KT2440 disulfide bond formation protein DsbB NP_742359.1 242290 D 160488 CDS NP_742360.1 26986935 1043717 243028..243498 1 NC_002947.3 binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 243498 pfrA 1043717 pfrA Pseudomonas putida KT2440 anti-RNA polymerase sigma 70 factor NP_742360.1 243028 D 160488 CDS NP_742361.1 26986936 1043718 complement(243507..244169) 1 NC_002947.3 similar to SP:P30417; identified by sequence similarity; peptidyl-prolyl cis-trans isomerase FklB 244169 fkl 1043718 fkl Pseudomonas putida KT2440 peptidyl-prolyl cis-trans isomerase FklB NP_742361.1 243507 R 160488 CDS NP_742362.1 26986937 1043720 complement(244185..244286) 1 NC_002947.3 hypothetical protein 244286 1043720 PP_0193 Pseudomonas putida KT2440 hypothetical protein NP_742362.1 244185 R 160488 CDS NP_742363.1 26986938 1043721 244324..245313 1 NC_002947.3 similar to GB:X15183, GB:M27024, GB:X07270, GB:M30626, SP:P07900, SP:P08238, PID:1620017, PID:1620018, PID:184419, PID:32486, PID:32488, and PID:703087; identified by sequence similarity; alginate regulatory protein AlgP 245313 algP 1043721 algP Pseudomonas putida KT2440 alginate regulatory protein AlgP NP_742363.1 244324 D 160488 CDS NP_742364.1 26986939 1043722 complement(245292..245771) 1 NC_002947.3 similar to GB:D42053, PID:577309, GB:D42053, and PID:577309; identified by sequence similarity; hypothetical protein 245771 1043722 PP_0195 Pseudomonas putida KT2440 hypothetical protein NP_742364.1 245292 R 160488 CDS NP_742365.1 26986940 1043723 245822..247732 1 NC_002947.3 similar to GB:Y00486, GB:M16446, SP:P07741, PID:178867, and PID:28819; identified by sequence similarity; ABC transporter ATP-binding protein 247732 1043723 PP_0196 Pseudomonas putida KT2440 ABC transporter ATP-binding protein NP_742365.1 245822 D 160488 CDS NP_742366.1 26986941 1043724 247732..248319 1 NC_002947.3 identified by match to PFAM protein family HMM PF03596; hypothetical protein 248319 1043724 PP_0197 Pseudomonas putida KT2440 hypothetical protein NP_742366.1 247732 D 160488 CDS NP_742367.1 26986942 1043725 248419..249051 1 NC_002947.3 identified by match to PFAM protein family HMM PF01810; amino acid transporter LysE 249051 1043725 PP_0198 Pseudomonas putida KT2440 amino acid transporter LysE NP_742367.1 248419 D 160488 CDS NP_742368.1 26986943 1043726 complement(249100..249846) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01145; hypothetical protein 249846 1043726 PP_0199 Pseudomonas putida KT2440 hypothetical protein NP_742368.1 249100 R 160488 CDS NP_742369.1 26986944 1043728 complement(249855..251201) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01957; hypothetical protein 251201 1043728 PP_0200 Pseudomonas putida KT2440 hypothetical protein NP_742369.1 249855 R 160488 CDS NP_742370.1 26986945 1043729 251267..251758 1 NC_002947.3 similar to GP:5596803; identified by sequence similarity; prolyl-tRNA synthetase 251758 1043729 PP_0201 Pseudomonas putida KT2440 prolyl-tRNA synthetase NP_742370.1 251267 D 160488 CDS NP_742371.1 26986946 1043730 complement(252777..253214) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00571; hypothetical protein 253214 1043730 PP_0202 Pseudomonas putida KT2440 hypothetical protein NP_742371.1 252777 R 160488 CDS NP_742372.1 26986947 1043732 complement(253385..255115) 1 NC_002947.3 similar to GP:436965, and GP:14585845; identified by sequence similarity; hypothetical protein 255115 1043732 PP_0203 Pseudomonas putida KT2440 hypothetical protein NP_742372.1 253385 R 160488 CDS NP_742373.1 26986948 1043733 255568..256317 1 NC_002947.3 similar to GP:9948330; identified by sequence similarity; GntR family transcriptional regulator 256317 1043733 PP_0204 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_742373.1 255568 D 160488 CDS NP_742374.1 26986949 1043735 256314..258038 1 NC_002947.3 identified by match to PFAM protein family HMM PF02910; oxidoreductase 258038 1043735 PP_0205 Pseudomonas putida KT2440 oxidoreductase NP_742374.1 256314 D 160488 CDS NP_742375.1 26986950 1043740 258101..258346 1 NC_002947.3 identified by match to PFAM protein family HMM PF00037; ferredoxin, 4Fe-4S 258346 1043740 PP_0206 Pseudomonas putida KT2440 ferredoxin, 4Fe-4S NP_742375.1 258101 D 160488 CDS NP_742376.1 26986951 1043747 258466..259872 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01729; nitrate ABC transporter substrate-binding protein 259872 1043747 PP_0207 Pseudomonas putida KT2440 nitrate ABC transporter substrate-binding protein NP_742376.1 258466 D 160488 CDS NP_742377.1 26986952 1043748 259888..260670 1 NC_002947.3 identified by match to PFAM protein family HMM PF00528; nitrate ABC transporter permease 260670 1043748 PP_0208 Pseudomonas putida KT2440 nitrate ABC transporter permease NP_742377.1 259888 D 160488 CDS NP_742378.1 26986953 1043749 260670..261521 1 NC_002947.3 identified by match to PFAM protein family HMM PF00005; nitrate ABC transporter ATP-binding protein 261521 1043749 PP_0209 Pseudomonas putida KT2440 nitrate ABC transporter ATP-binding protein NP_742378.1 260670 D 160488 CDS NP_742379.1 26986954 1043750 261518..262483 1 NC_002947.3 similar to SP:P34945; identified by sequence similarity; phycobiliprotein 262483 1043750 PP_0210 Pseudomonas putida KT2440 phycobiliprotein NP_742379.1 261518 D 160488 CDS NP_742380.1 26986955 1043751 262483..262764 1 NC_002947.3 hypothetical protein 262764 1043751 PP_0211 Pseudomonas putida KT2440 hypothetical protein NP_742380.1 262483 D 160488 CDS NP_742381.1 26986956 1043755 263249..264691 1 NC_002947.3 catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; succinate-semialdehyde dehydrogenase I 264691 gabD 1043755 gabD Pseudomonas putida KT2440 succinate-semialdehyde dehydrogenase I NP_742381.1 263249 D 160488 CDS NP_742382.1 26986957 1043757 264874..266151 1 NC_002947.3 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 266151 gabT 1043757 gabT Pseudomonas putida KT2440 4-aminobutyrate aminotransferase NP_742382.1 264874 D 160488 CDS NP_742383.1 26986958 1043758 266290..267549 1 NC_002947.3 identified by match to PFAM protein family HMM PF00072; signal transduction protein 267549 1043758 PP_0215 Pseudomonas putida KT2440 signal transduction protein NP_742383.1 266290 D 160488 CDS NP_742384.1 26986959 1043759 complement(267640..268626) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00990; PAS/PAC sensor-containing diguanylate cyclase 268626 1043759 PP_0216 Pseudomonas putida KT2440 PAS/PAC sensor-containing diguanylate cyclase NP_742384.1 267640 R 160488 CDS NP_742385.1 26986960 1043760 complement(268768..269952) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00487; fatty acid desaturase 269952 1043760 PP_0217 Pseudomonas putida KT2440 fatty acid desaturase NP_742385.1 268768 R 160488 CDS NP_742386.1 26986961 1043761 270099..271994 1 NC_002947.3 identified by match to PFAM protein family HMM PF00990; sensory box protein 271994 1043761 PP_0218 Pseudomonas putida KT2440 sensory box protein NP_742386.1 270099 D 160488 CDS NP_742387.1 26986962 1043763 complement(272023..272667) 1 NC_002947.3 similar to GB:L14542, SP:Q07444, and PID:292361; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein 272667 1043763 PP_0219 Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_742387.1 272023 R 160488 CDS NP_742388.1 26986963 1043764 complement(272657..273766) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00960; ABC transporter ATP-binding protein 273766 1043764 PP_0220 Pseudomonas putida KT2440 ABC transporter ATP-binding protein NP_742388.1 272657 R 160488 CDS NP_742389.1 26986964 1043765 complement(273768..274568) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03180; metal ABC transporter substrate-binding protein 274568 1043765 PP_0221 Pseudomonas putida KT2440 metal ABC transporter substrate-binding protein NP_742389.1 273768 R 160488 CDS NP_742390.1 26986965 1043766 complement(274561..275946) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01409; DszA family monooxygenase 275946 1043766 PP_0222 Pseudomonas putida KT2440 DszA family monooxygenase NP_742390.1 274561 R 160488 CDS NP_742391.1 26986966 1043767 complement(275946..277166) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00441; DszC family monooxygenase 277166 1043767 PP_0223 Pseudomonas putida KT2440 DszC family monooxygenase NP_742391.1 275946 R 160488 CDS NP_742392.1 26986967 1043769 complement(277263..278504) 1 NC_002947.3 similar to SP:P54998; identified by sequence similarity; DszC family monooxygenase 278504 1043769 PP_0224 Pseudomonas putida KT2440 DszC family monooxygenase NP_742392.1 277263 R 160488 CDS NP_742393.1 26986968 1043770 complement(278818..279576) 1 NC_002947.3 similar to GB:M57732, SP:P20823, PID:1708747, and PID:184265; identified by sequence similarity; amino-acid ABC transporter ATP-binding protein YecC 279576 1043770 PP_0225 Pseudomonas putida KT2440 amino-acid ABC transporter ATP-binding protein YecC NP_742393.1 278818 R 160488 CDS NP_742394.1 26986969 1043771 complement(279579..280247) 1 NC_002947.3 similar to SP:Q02470, and PID:149582; identified by sequence similarity; polar amino acid ABC transporter inner membrane subunit 280247 1043771 PP_0226 Pseudomonas putida KT2440 polar amino acid ABC transporter inner membrane subunit NP_742394.1 279579 R 160488 CDS NP_742395.1 26986970 1043773 complement(280244..281038) 1 NC_002947.3 similar to SP:P34880; identified by sequence similarity; cystine transporter subunit 281038 1043773 PP_0227 Pseudomonas putida KT2440 cystine transporter subunit NP_742395.1 280244 R 160488 CDS NP_742396.1 26986971 1043774 281755..282279 1 NC_002947.3 similar to GB:X74794, SP:P33991, and PID:940536; identified by sequence similarity; serine O-acetyltransferase 282279 1043774 PP_0228 Pseudomonas putida KT2440 serine O-acetyltransferase NP_742396.1 281755 D 160488 CDS NP_742397.1 26986972 1043777 282591..284552 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00842; choline/carnitine/betaine transporter 284552 1043777 PP_0229 Pseudomonas putida KT2440 choline/carnitine/betaine transporter NP_742397.1 282591 D 160488 CDS NP_742398.1 26986973 1043779 complement(284615..285448) 1 NC_002947.3 catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide; non-heme iron oxidase; allows the use of taurine as an alternative sulfur source; forms homodimers; taurine dioxygenase 285448 tauD 1043779 tauD Pseudomonas putida KT2440 taurine dioxygenase NP_742398.1 284615 R 160488 CDS NP_742399.1 26986974 1043784 complement(285497..286336) 1 NC_002947.3 similar to GB:X14482, SP:P11796, PID:19693, PID:411152, and PID:411889; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein 286336 tauC 1043784 tauC Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_742399.1 285497 R 160488 CDS NP_742400.1 26986975 1043785 complement(286333..287121) 1 NC_002947.3 Part of the ABC transporter complex tauABC involved in taurine import; taurine transporter ATP-binding subunit 287121 tauB 1043785 tauB Pseudomonas putida KT2440 taurine transporter ATP-binding subunit NP_742400.1 286333 R 160488 CDS NP_742401.1 26986976 1043786 complement(287135..288106) 1 NC_002947.3 similar to SP:Q47537; identified by sequence similarity; taurine ABC transporter substrate-binding protein 288106 tauA 1043786 tauA Pseudomonas putida KT2440 taurine ABC transporter substrate-binding protein NP_742401.1 287135 R 160488 CDS NP_742402.1 26986977 1043787 288581..289915 1 NC_002947.3 similar to GB:D14812, and PID:285969; identified by sequence similarity; porin 289915 oprE 1043787 oprE Pseudomonas putida KT2440 porin NP_742402.1 288581 D 160488 CDS NP_742403.1 26986978 1043789 290081..290719 1 NC_002947.3 similar to GP:3420603, and GP:3420603; identified by sequence similarity; peroxidase 290719 lsfA 1043789 lsfA Pseudomonas putida KT2440 peroxidase NP_742403.1 290081 D 160488 CDS NP_742404.1 26986979 1043798 290939..291532 1 NC_002947.3 similar to SP:O85762, and SP:O85762; identified by sequence similarity; NAD(P)H-dependent FMN reductase 291532 ssuE 1043798 ssuE Pseudomonas putida KT2440 NAD(P)H-dependent FMN reductase NP_742404.1 290939 D 160488 CDS NP_742405.1 26986980 1043799 291618..292583 1 NC_002947.3 similar to GP:3420605; identified by sequence similarity; aliphatic sulfonate ABC transporter substrate-binding protein 292583 ssuA 1043799 ssuA Pseudomonas putida KT2440 aliphatic sulfonate ABC transporter substrate-binding protein NP_742405.1 291618 D 160488 CDS NP_742406.1 26986981 1043800 292643..293791 1 NC_002947.3 catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase 293791 ssuD 1043800 ssuD Pseudomonas putida KT2440 alkanesulfonate monooxygenase NP_742406.1 292643 D 160488 CDS NP_742407.1 26986982 1043802 293802..294599 1 NC_002947.3 similar to GP:3420607; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein 294599 ssuC 1043802 ssuC Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_742407.1 293802 D 160488 CDS NP_742408.1 26986983 1043803 294596..295408 1 NC_002947.3 part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic substrate-binding subunit, SsuB the ATP-binding subunit and SsuC the permease; aliphatic sulfonate ABC transporter ATP-binding subunit 295408 ssuB 1043803 ssuB Pseudomonas putida KT2440 aliphatic sulfonate ABC transporter ATP-binding subunit NP_742408.1 294596 D 160488 CDS NP_742409.1 26986984 1043806 295436..295651 1 NC_002947.3 similar to GP:3420609, and GP:3420609; identified by sequence similarity; TOBE domain-containing protein 295651 ssuF 1043806 ssuF Pseudomonas putida KT2440 TOBE domain-containing protein NP_742409.1 295436 D 160488 CDS NP_742410.1 26986985 1043810 complement(295793..296425) 1 NC_002947.3 similar to GP:9946138; identified by sequence similarity; TetR family transcriptional regulator 296425 1043810 PP_0242 Pseudomonas putida KT2440 TetR family transcriptional regulator NP_742410.1 295793 R 160488 CDS NP_742411.1 26986986 1043812 complement(296425..298002) 1 NC_002947.3 involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 298002 gshA 1043812 gshA Pseudomonas putida KT2440 glutamate--cysteine ligase NP_742411.1 296425 R 160488 CDS NP_742412.1 26986987 1043813 complement(298156..298539) 1 NC_002947.3 similar to GP:9951508; identified by sequence similarity; thioesterase 298539 1043813 PP_0244 Pseudomonas putida KT2440 thioesterase NP_742412.1 298156 R 160488 CDS NP_742413.1 26986988 1043816 complement(298539..301124) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00575; S1 RNA-binding domain-containing protein 301124 1043816 PP_0245 Pseudomonas putida KT2440 S1 RNA-binding domain-containing protein NP_742413.1 298539 R 160488 CDS NP_742414.1 26986989 1043818 301081..301821 1 NC_002947.3 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 301821 ompR 1043818 ompR Pseudomonas putida KT2440 osmolarity response regulator NP_742414.1 301081 D 160488 CDS NP_742415.1 26986990 1043819 301835..303148 1 NC_002947.3 identified by match to PFAM protein family HMM PF02518; integral membrane sensor signal transduction histidine kinase 303148 envZ 1043819 envZ Pseudomonas putida KT2440 integral membrane sensor signal transduction histidine kinase NP_742415.1 301835 D 160488 CDS NP_742416.1 26986991 1043821 complement(303246..304151) 1 NC_002947.3 similar to GB:X57130, and PID:296288; identified by sequence similarity; alpha-L-glutamate ligase 304151 rimK 1043821 rimK Pseudomonas putida KT2440 alpha-L-glutamate ligase NP_742416.1 303246 R 160488 CDS NP_742417.1 26986992 1043823 complement(304148..304768) 1 NC_002947.3 hypothetical protein 304768 1043823 PP_0249 Pseudomonas putida KT2440 hypothetical protein NP_742417.1 304148 R 160488 CDS NP_742418.1 26986993 1043825 304740..305141 1 NC_002947.3 identified by match to PFAM protein family HMM PF01479; RNA-binding S4 domain-containing protein 305141 hslR 1043825 hslR Pseudomonas putida KT2440 RNA-binding S4 domain-containing protein NP_742418.1 304740 D 160488 CDS NP_742419.1 26986994 1043826 complement(305170..305964) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01569; hypothetical protein 305964 1043826 PP_0251 Pseudomonas putida KT2440 hypothetical protein NP_742419.1 305170 R 160488 CDS NP_742420.1 26986995 1043827 306085..306984 1 NC_002947.3 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; heat shock protein 33 306984 hslO 1043827 hslO Pseudomonas putida KT2440 heat shock protein 33 NP_742420.1 306085 D 160488 CDS NP_742421.1 26986996 1043830 308852..309292 1 NC_002947.3 identified by match to PFAM protein family HMM PF03061; thioesterase 309292 1043830 PP_0254 Pseudomonas putida KT2440 thioesterase NP_742421.1 308852 D 160488 CDS NP_742422.1 26986997 1043833 complement(309349..309831) 1 NC_002947.3 hypothetical protein 309831 1043833 PP_0255 Pseudomonas putida KT2440 hypothetical protein NP_742422.1 309349 R 160488 CDS NP_742423.1 26986998 1043835 complement(310028..312373) 1 NC_002947.3 similar to SP:P07658; identified by sequence similarity; molybdopterin oxidoreductase subunit alpha 312373 1043835 PP_0256 Pseudomonas putida KT2440 molybdopterin oxidoreductase subunit alpha NP_742423.1 310028 R 160488 CDS NP_742424.1 26986999 1043838 complement(312379..313209) 1 NC_002947.3 similar to GB:X60787, GB:S41456, SP:Q01167, PID:1388160, and PID:33854; identified by sequence similarity; formate dehydrogenase accessory protein FdhD 313209 1043838 PP_0257 Pseudomonas putida KT2440 formate dehydrogenase accessory protein FdhD NP_742424.1 312379 R 160488 CDS NP_742425.1 26987000 1043839 313385..313825 1 NC_002947.3 identified by match to PFAM protein family HMM PF01476; LysM domain/BON superfamily protein 313825 1043839 PP_0258 Pseudomonas putida KT2440 LysM domain/BON superfamily protein NP_742425.1 313385 D 160488 CDS NP_742426.1 26987001 1043842 complement(313876..314538) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00702; HAD superfamily hydrolase 314538 1043842 PP_0259 Pseudomonas putida KT2440 HAD superfamily hydrolase NP_742426.1 313876 R 160488 CDS NP_742427.1 26987002 1043844 314603..315169 1 NC_002947.3 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 315169 nudE 1043844 nudE Pseudomonas putida KT2440 ADP-ribose diphosphatase NudE NP_742427.1 314603 D 160488 CDS NP_742428.1 26987003 1043847 315184..315984 1 NC_002947.3 similar to SP:P22255; identified by sequence similarity; 3'(2'),5'-bisphosphate nucleotidase 315984 cysQ 1043847 cysQ Pseudomonas putida KT2440 3'(2'),5'-bisphosphate nucleotidase NP_742428.1 315184 D 160488 CDS NP_742429.1 26987004 1043848 complement(316067..316522) 1 NC_002947.3 similar to GB:Z22971, GB:Z22969, GB:Z22968, PID:312148, GB:Z22971, GB:Z22969, GB:Z22968, and PID:312148; identified by sequence similarity; hypothetical protein 316522 1043848 PP_0262 Pseudomonas putida KT2440 hypothetical protein NP_742429.1 316067 R 160488 CDS NP_742430.1 26987005 1043849 complement(316522..317928) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00072; Fis family transcriptional regulator 317928 1043849 PP_0263 Pseudomonas putida KT2440 Fis family transcriptional regulator NP_742430.1 316522 R 160488 CDS NP_742431.1 26987006 1043853 complement(317925..319739) 1 NC_002947.3 similar to GP:9951467; identified by sequence similarity; sensor histidine kinase 319739 1043853 PP_0264 Pseudomonas putida KT2440 sensor histidine kinase NP_742431.1 317925 R 160488 CDS NP_742432.1 26987007 1043858 complement(319782..320327) 1 NC_002947.3 similar to GP:3135676; identified by sequence similarity; dTDP-4-dehydrorhamnose 3,5-epimerase 320327 1043858 PP_0265 Pseudomonas putida KT2440 dTDP-4-dehydrorhamnose 3,5-epimerase NP_742432.1 319782 R 160488 CDS NP_742433.1 26987008 1043859 320605..321711 1 NC_002947.3 catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase 321711 1043859 PP_0266 Pseudomonas putida KT2440 agmatine deiminase NP_742433.1 320605 D 160488 CDS NP_742434.1 26987009 1043860 complement(322169..324238) 1 NC_002947.3 similar to GP:5712714, and GP:5712714; identified by sequence similarity; TonB-dependent siderophore receptor 324238 1043860 PP_0267 Pseudomonas putida KT2440 TonB-dependent siderophore receptor NP_742434.1 322169 R 160488 CDS NP_742435.1 26987010 1043863 324713..326032 1 NC_002947.3 similar to GP:9948840, GB:U00020, and PID:467105; identified by sequence similarity; porin 326032 oprQ 1043863 oprQ Pseudomonas putida KT2440 porin NP_742435.1 324713 D 160488 CDS NP_742436.1 26987011 1043865 complement(326063..327730) 1 NC_002947.3 similar to SP:P35646, GB:Z12609, and PID:41331; identified by sequence similarity; glutamate synthase, large subunit 327730 1043865 PP_0269 Pseudomonas putida KT2440 glutamate synthase, large subunit NP_742436.1 326063 R 160488 CDS NP_742437.1 26987012 1043866 complement(327880..329247) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02518; integral membrane sensor signal transduction histidine kinase 329247 1043866 PP_0270 Pseudomonas putida KT2440 integral membrane sensor signal transduction histidine kinase NP_742437.1 327880 R 160488 CDS NP_742438.1 26987013 1043867 complement(329249..329968) 1 NC_002947.3 similar to GB:L10328, SP:P26218, PID:290568, GB:L10328, SP:P26218, and PID:290568; identified by sequence similarity; winged helix family two component transcriptional regulator 329968 gltR-1 1043867 gltR-1 Pseudomonas putida KT2440 winged helix family two component transcriptional regulator NP_742438.1 329249 R 160488 CDS NP_742439.1 26987014 1043868 330109..332406 1 NC_002947.3 similar to SP:P48632; identified by sequence similarity; TonB-dependent siderophore receptor 332406 1043868 PP_0272 Pseudomonas putida KT2440 TonB-dependent siderophore receptor NP_742439.1 330109 D 160488 CDS NP_742440.1 26987015 1043869 complement(332472..332684) 1 NC_002947.3 similar to GP:9946035, and GP:9946035; identified by sequence similarity; hypothetical protein 332684 1043869 PP_0273 Pseudomonas putida KT2440 hypothetical protein NP_742440.1 332472 R 160488 CDS NP_742441.1 26987016 1043873 333189..333728 1 NC_002947.3 identified by match to PFAM protein family HMM PF01381; helix-turn-helix domain-containing protein 333728 1043873 PP_0274 Pseudomonas putida KT2440 helix-turn-helix domain-containing protein NP_742441.1 333189 D 160488 CDS NP_742442.1 26987017 1043875 334148..334363 1 NC_002947.3 similar to GP:6960288; identified by sequence similarity; hypothetical protein 334363 1043875 PP_0275 Pseudomonas putida KT2440 hypothetical protein NP_742442.1 334148 D 160488 CDS NP_742443.1 26987018 1043882 complement(334360..334683) 1 NC_002947.3 similar to GP:6960297; identified by sequence similarity; Cro/CI family transcriptional regulator 334683 1043882 PP_0276 Pseudomonas putida KT2440 Cro/CI family transcriptional regulator NP_742443.1 334360 R 160488 CDS NP_742444.1 26987019 1043883 complement(335145..335393) 1 NC_002947.3 hypothetical protein 335393 1043883 PP_0277 Pseudomonas putida KT2440 hypothetical protein NP_742444.1 335145 R 160488 CDS NP_742445.1 26987020 1043886 335914..336150 1 NC_002947.3 hypothetical protein 336150 1043886 PP_0278 Pseudomonas putida KT2440 hypothetical protein NP_742445.1 335914 D 160488 CDS NP_742446.1 26987021 1043887 complement(336543..337748) 1 NC_002947.3 hypothetical protein 337748 1043887 PP_0279 Pseudomonas putida KT2440 hypothetical protein NP_742446.1 336543 R 160488 CDS NP_742447.1 26987022 1043890 complement(337877..338566) 1 NC_002947.3 similar to GP:2668597; identified by sequence similarity; polar amino acid ABC transporter inner membrane subunit 338566 1043890 PP_0280 Pseudomonas putida KT2440 polar amino acid ABC transporter inner membrane subunit NP_742447.1 337877 R 160488 CDS NP_742448.1 26987023 1043892 complement(338566..339258) 1 NC_002947.3 similar to GB:L03840, GB:M59373, SP:P22455, PID:182571, PID:186621, and PID:31372; identified by sequence similarity; polar amino acid ABC transporter inner membrane subunit 339258 1043892 PP_0281 Pseudomonas putida KT2440 polar amino acid ABC transporter inner membrane subunit NP_742448.1 338566 R 160488 CDS NP_742449.1 26987024 1043897 complement(339313..340065) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00497; amino acid ABC transporter substrate-binding protein 340065 1043897 PP_0282 Pseudomonas putida KT2440 amino acid ABC transporter substrate-binding protein NP_742449.1 339313 R 160488 CDS NP_742450.1 26987025 1043898 complement(340077..340850) 1 NC_002947.3 similar to GP:9951453; identified by sequence similarity; amino acid ABC transporter ATP-binding protein 340850 1043898 PP_0283 Pseudomonas putida KT2440 amino acid ABC transporter ATP-binding protein NP_742450.1 340077 R 160488 CDS NP_742451.1 26987026 1043911 341482..342867 1 NC_002947.3 similar to GB:X53331, GB:X07362, GB:M55270, GB:M58549, SP:P08493, PID:187591, PID:187593, PID:34614, and PID:34618; identified by sequence similarity; GABA permease 342867 1043911 PP_0284 Pseudomonas putida KT2440 GABA permease NP_742451.1 341482 D 160488 CDS NP_742452.1 26987027 1043930 complement(344264..344536) 1 NC_002947.3 hypothetical protein 344536 1043930 PP_0285 Pseudomonas putida KT2440 hypothetical protein NP_742452.1 344264 R 160488 CDS NP_742453.1 26987028 1043933 complement(344533..345600) 1 NC_002947.3 similar to GB:M63959, GB:U06976, SP:P30533, PID:1235526, PID:177874, and PID:463882; identified by sequence similarity; A/G-specific adenine glycosylase 345600 mutY 1043933 mutY Pseudomonas putida KT2440 A/G-specific adenine glycosylase NP_742453.1 344533 R 160488 CDS NP_742454.1 26987029 1043936 complement(345597..347843) 1 NC_002947.3 AsmA family protein 347843 1043936 PP_0287 Pseudomonas putida KT2440 AsmA family protein NP_742454.1 345597 R 160488 CDS NP_742455.1 26987030 1043954 348112..349773 1 NC_002947.3 similar to GB:X74567, SP:P42214, SP:P42501, PID:397405, and PID:455023; identified by sequence similarity; major facilitator superfamily protein 349773 1043954 PP_0288 Pseudomonas putida KT2440 major facilitator superfamily protein NP_742455.1 348112 D 160488 CDS NP_742456.1 26987031 1043974 349953..350585 1 NC_002947.3 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 350585 hisB 1043974 hisB Pseudomonas putida KT2440 imidazoleglycerol-phosphate dehydratase NP_742456.1 349953 D 160488 CDS NP_742457.1 26987032 1043975 350586..351224 1 NC_002947.3 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 351224 hisH 1043975 hisH Pseudomonas putida KT2440 imidazole glycerol phosphate synthase subunit HisH NP_742457.1 350586 D 160488 CDS NP_742458.1 26987033 1043977 351225..351485 1 NC_002947.3 hypothetical protein 351485 1043977 PP_0291 Pseudomonas putida KT2440 hypothetical protein NP_742458.1 351225 D 160488 CDS NP_742459.1 26987034 1043978 351513..352250 1 NC_002947.3 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 352250 hisA 1043978 hisA Pseudomonas putida KT2440 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase NP_742459.1 351513 D 160488 CDS NP_742460.1 26987035 1043980 352261..353031 1 NC_002947.3 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 353031 hisF 1043980 hisF Pseudomonas putida KT2440 imidazole glycerol phosphate synthase subunit HisF NP_742460.1 352261 D 160488 CDS NP_742461.1 26987036 1043981 complement(353149..354327) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03603; glycine betaine/L-proline ABC transporter ATP-binding subunit 354327 1043981 PP_0294 Pseudomonas putida KT2440 glycine betaine/L-proline ABC transporter ATP-binding subunit NP_742461.1 353149 R 160488 CDS NP_742462.1 26987037 1043983 complement(354324..355169) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01183; glycine betaine/L-proline ABC transporter permease 355169 1043983 PP_0295 Pseudomonas putida KT2440 glycine betaine/L-proline ABC transporter permease NP_742462.1 354324 R 160488 CDS NP_742463.1 26987038 1043984 complement(355254..356201) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04069; glycine/betaine ABC transporter substrate-binding protein 356201 1043984 PP_0296 Pseudomonas putida KT2440 glycine/betaine ABC transporter substrate-binding protein NP_742463.1 355254 R 160488 CDS NP_742464.1 26987039 1043986 356654..358030 1 NC_002947.3 similar to SP:P42630; identified by sequence similarity; L-serine dehydratase 358030 sda-1 1043986 sda-1 Pseudomonas putida KT2440 L-serine dehydratase NP_742464.1 356654 D 160488 CDS NP_742465.1 26987040 1043988 358532..359638 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 359638 1043988 PP_0298 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_742465.1 358532 D 160488 CDS NP_742466.1 26987041 1043989 complement(359758..360216) 1 NC_002947.3 hypothetical protein 360216 1043989 PP_0299 Pseudomonas putida KT2440 hypothetical protein NP_742466.1 359758 R 160488 CDS NP_742467.1 26987042 1043990 360348..361934 1 NC_002947.3 identified by match to PFAM protein family HMM PF02051; metallopeptidase 361934 1043990 PP_0300 Pseudomonas putida KT2440 metallopeptidase NP_742467.1 360348 D 160488 CDS NP_742468.1 26987043 1043992 complement(362034..362504) 1 NC_002947.3 hypothetical protein 362504 1043992 PP_0301 Pseudomonas putida KT2440 hypothetical protein NP_742468.1 362034 R 160488 CDS NP_742469.1 26987044 1043993 complement(362515..363480) 1 NC_002947.3 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 363480 1043993 PP_0302 Pseudomonas putida KT2440 3-hydroxybutyryl-CoA dehydrogenase NP_742469.1 362515 R 160488 CDS NP_742470.1 26987045 1043994 complement(363647..364531) 1 NC_002947.3 similar to GP:9951711, and GP:9951711; identified by sequence similarity; hypothetical protein 364531 1043994 PP_0303 Pseudomonas putida KT2440 hypothetical protein NP_742470.1 363647 R 160488 CDS NP_742471.1 26987046 1043995 complement(364655..365623) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04069; hypothetical protein 365623 1043995 PP_0304 Pseudomonas putida KT2440 hypothetical protein NP_742471.1 364655 R 160488 CDS NP_742472.1 26987047 1043996 365732..366691 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 366691 1043996 PP_0305 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_742472.1 365732 D 160488 CDS NP_742473.1 26987048 1043999 complement(367386..368114) 1 NC_002947.3 hypothetical protein 368114 1043999 PP_0306 Pseudomonas putida KT2440 hypothetical protein NP_742473.1 367386 R 160488 CDS NP_742474.1 26987049 1044000 complement(368217..368648) 1 NC_002947.3 similar to GB:M86752, SP:P31948, and PID:184565; identified by sequence similarity; hypothetical protein 368648 1044000 PP_0307 Pseudomonas putida KT2440 hypothetical protein NP_742474.1 368217 R 160488 CDS NP_742475.1 26987050 1044001 368919..369896 1 NC_002947.3 identified by match to PFAM protein family HMM PF01244; membrane dipeptidase 369896 1044001 PP_0308 Pseudomonas putida KT2440 membrane dipeptidase NP_742475.1 368919 D 160488 CDS NP_742476.1 26987051 1044002 369972..370502 1 NC_002947.3 hypothetical protein 370502 1044002 PP_0309 Pseudomonas putida KT2440 hypothetical protein NP_742476.1 369972 D 160488 CDS NP_742477.1 26987052 1044003 370518..372578 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01317; FMN-binding oxidoreductase 372578 1044003 PP_0310 Pseudomonas putida KT2440 FMN-binding oxidoreductase NP_742477.1 370518 D 160488 CDS NP_742478.1 26987053 1044006 372757..374709 1 NC_002947.3 identified by match to PFAM protein family HMM PF02754; (Fe-S)-binding protein 374709 1044006 PP_0311 Pseudomonas putida KT2440 (Fe-S)-binding protein NP_742478.1 372757 D 160488 CDS NP_742479.1 26987054 1044007 374955..375941 1 NC_002947.3 identified by match to PFAM protein family HMM PF00766; electron transfer flavoprotein subunit alpha 375941 1044007 PP_0312 Pseudomonas putida KT2440 electron transfer flavoprotein subunit alpha NP_742479.1 374955 D 160488 CDS NP_742480.1 26987055 1044008 375952..376722 1 NC_002947.3 identified by match to PFAM protein family HMM PF01012; electron transfer flavoprotein subunit beta 376722 1044008 PP_0313 Pseudomonas putida KT2440 electron transfer flavoprotein subunit beta NP_742480.1 375952 D 160488 CDS NP_742481.1 26987056 1044009 377324..378055 1 NC_002947.3 similar to GP:2950328; identified by sequence similarity; hypothetical protein 378055 1044009 PP_0314 Pseudomonas putida KT2440 hypothetical protein NP_742481.1 377324 D 160488 CDS NP_742482.1 26987057 1044010 complement(378120..379412) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00355; Rieske (2Fe-2S) domain-containing protein 379412 1044010 PP_0315 Pseudomonas putida KT2440 Rieske (2Fe-2S) domain-containing protein NP_742482.1 378120 R 160488 CDS NP_742483.1 26987058 1044011 379702..380808 1 NC_002947.3 similar to GP:9951737; identified by sequence similarity; oxidoreductase FAD-binding domain-containing protein 380808 1044011 PP_0316 Pseudomonas putida KT2440 oxidoreductase FAD-binding domain-containing protein NP_742483.1 379702 D 160488 CDS NP_742484.1 26987059 1044012 complement(380917..382542) 1 NC_002947.3 similar to GP:9947573; identified by sequence similarity; methyl-accepting chemotaxis sensory transducer 382542 1044012 PP_0317 Pseudomonas putida KT2440 methyl-accepting chemotaxis sensory transducer NP_742484.1 380917 R 160488 CDS NP_742485.1 26987060 1044013 382809..383039 1 NC_002947.3 hypothetical protein 383039 1044013 PP_0318 Pseudomonas putida KT2440 hypothetical protein NP_742485.1 382809 D 160488 CDS NP_742486.1 26987061 1044014 383036..383338 1 NC_002947.3 hypothetical protein 383338 1044014 PP_0319 Pseudomonas putida KT2440 hypothetical protein NP_742486.1 383036 D 160488 CDS NP_742487.1 26987062 1044017 383521..385458 1 NC_002947.3 identified by match to PFAM protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer 385458 1044017 PP_0320 Pseudomonas putida KT2440 methyl-accepting chemotaxis sensory transducer NP_742487.1 383521 D 160488 CDS NP_742488.1 26987063 1044018 complement(385493..386533) 1 NC_002947.3 similar to GP:2865134, and GP:2865134; identified by sequence similarity; threonine aldolase 386533 1044018 PP_0321 Pseudomonas putida KT2440 threonine aldolase NP_742488.1 385493 R 160488 CDS NP_742489.1 26987064 1044019 386859..388112 1 NC_002947.3 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 388112 glyA-1 1044019 glyA-1 Pseudomonas putida KT2440 serine hydroxymethyltransferase NP_742489.1 386859 D 160488 CDS NP_742490.1 26987065 1044020 388128..389378 1 NC_002947.3 similar to SP:P40875; identified by sequence similarity; sarcosine oxidase subunit beta 389378 soxB 1044020 soxB Pseudomonas putida KT2440 sarcosine oxidase subunit beta NP_742490.1 388128 D 160488 CDS NP_742491.1 26987066 1044022 389393..389728 1 NC_002947.3 similar to GP:9951744, GB:U11053, GB:U17298, GB:L36130, SP:P41145, PID:532060, PID:595933, PID:596070, PID:598185, and PID:722618; identified by sequence similarity; sarcosine oxidase subunit delta 389728 soxD 1044022 soxD Pseudomonas putida KT2440 sarcosine oxidase subunit delta NP_742491.1 389393 D 160488 CDS NP_742492.1 26987067 1044023 389725..392739 1 NC_002947.3 similar to GB:U11053, GB:U17298, GB:L36130, SP:P41145, PID:532060, PID:595933, PID:596070, PID:598185, and PID:722618; identified by sequence similarity; sarcosine oxidase subunit alpha 392739 soxA 1044023 soxA Pseudomonas putida KT2440 sarcosine oxidase subunit alpha NP_742492.1 389725 D 160488 CDS NP_742493.1 26987068 1044024 392814..393446 1 NC_002947.3 similar to GB:U11053, GB:U17298, GB:L36130, SP:P41145, PID:532060, PID:595933, PID:596070, PID:598185, and PID:722618; identified by sequence similarity; sarcosine oxidase subunit gamma 393446 soxG 1044024 soxG Pseudomonas putida KT2440 sarcosine oxidase subunit gamma NP_742493.1 392814 D 160488 CDS NP_742494.1 26987069 1044026 393458..394315 1 NC_002947.3 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 394315 purU-1 1044026 purU-1 Pseudomonas putida KT2440 formyltetrahydrofolate deformylase NP_742494.1 393458 D 160488 CDS NP_742495.1 26987070 1044027 394617..395816 1 NC_002947.3 similar to SP:P46154, GB:X64318, GB:U26173, GB:S79880, PID:1237118, and PID:30956; identified by sequence similarity; formaldehyde dehydrogenase 395816 fdhA 1044027 fdhA Pseudomonas putida KT2440 formaldehyde dehydrogenase NP_742495.1 394617 D 160488 CDS NP_742496.1 26987071 1044028 complement(396020..396943) 1 NC_002947.3 hypothetical protein 396943 1044028 PP_0329 Pseudomonas putida KT2440 hypothetical protein NP_742496.1 396020 R 160488 CDS NP_742497.1 26987072 1044029 396918..397712 1 NC_002947.3 hypothetical protein 397712 1044029 PP_0330 Pseudomonas putida KT2440 hypothetical protein NP_742497.1 396918 D 160488 CDS NP_742498.1 26987073 1044030 complement(397733..398482) 1 NC_002947.3 hypothetical protein 398482 1044030 PP_0331 Pseudomonas putida KT2440 hypothetical protein NP_742498.1 397733 R 160488 CDS NP_742499.1 26987074 1044031 complement(398694..399581) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00530; acyltransferase 399581 1044031 PP_0332 Pseudomonas putida KT2440 acyltransferase NP_742499.1 398694 R 160488 CDS NP_742500.1 26987075 1044032 399763..400263 1 NC_002947.3 similar to GP:9946323, and GP:9946323; identified by sequence similarity; hypothetical protein 400263 1044032 PP_0333 Pseudomonas putida KT2440 hypothetical protein NP_742500.1 399763 D 160488 CDS NP_742501.1 26987076 1044035 400413..401471 1 NC_002947.3 similar to GB:X66899, GB:X72990, GB:X72991, GB:X72992, GB:X72993, GB:X72994, GB:X72995, GB:X72996, GB:X72997, GB:X72998, GB:X72999, GB:X73000, GB:X73001, GB:X73002, GB:X73003, GB:X73004, SP:Q01844, PID:1572086, PID:1666068, PID:31280, and PID:825654; identified by sequence similarity; ISPpu11, transposase 401471 1044035 PP_0334 Pseudomonas putida KT2440 ISPpu11, transposase NP_742501.1 400413 D 160488 CDS NP_742502.1 26987077 1044036 complement(401901..402524) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01262; glutathione S-transferase 402524 1044036 PP_0335 Pseudomonas putida KT2440 glutathione S-transferase NP_742502.1 401901 R 160488 CDS NP_742503.1 26987078 1044038 complement(402528..403196) 1 NC_002947.3 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 403196 msrA 1044038 msrA Pseudomonas putida KT2440 methionine sulfoxide reductase A NP_742503.1 402528 R 160488 CDS NP_742504.1 26987079 1044039 complement(403365..406055) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00990; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 406055 1044039 PP_0337 Pseudomonas putida KT2440 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase NP_742504.1 403365 R 160488 CDS NP_742505.1 26987080 1044041 complement(406363..408003) 1 NC_002947.3 Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; dihydrolipoamide acetyltransferase 408003 aceF 1044041 aceF Pseudomonas putida KT2440 dihydrolipoamide acetyltransferase NP_742505.1 406363 R 160488 CDS NP_742506.1 26987081 1044044 complement(408017..410662) 1 NC_002947.3 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 410662 aceE 1044044 aceE Pseudomonas putida KT2440 pyruvate dehydrogenase subunit E1 NP_742506.1 408017 R 160488 CDS NP_742507.1 26987082 1044045 411046..413979 1 NC_002947.3 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 413979 glnE 1044045 glnE Pseudomonas putida KT2440 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase NP_742507.1 411046 D 160488 CDS NP_742508.1 26987083 1044046 414182..415231 1 NC_002947.3 similar to GB:M19116, PID:142133, GB:X04500, GB:M15330, GB:K02770, GB:M54933, GB:X02532, GB:X56087, GB:X52431, GB:M15840, SP:P01584, PID:186288, PID:307043, PID:307045, PID:312408, PID:33790, PID:35663, and PID:386816; identified by sequence similarity; lipopolysaccharide heptosyltransferase II 415231 waaF 1044046 waaF Pseudomonas putida KT2440 lipopolysaccharide heptosyltransferase II NP_742508.1 414182 D 160488 CDS NP_742509.1 26987084 1044047 415232..416290 1 NC_002947.3 similar to GB:L13203, SP:Q12951, PID:1911185, and PID:563168; identified by sequence similarity; lipopolysaccharide heptosyltransferase I 416290 waaC 1044047 waaC Pseudomonas putida KT2440 lipopolysaccharide heptosyltransferase I NP_742509.1 415232 D 160488 CDS NP_742510.1 26987085 1044049 416290..417414 1 NC_002947.3 identified by match to PFAM protein family HMM PF00534; lipopolysaccharide core biosynthesis protein WaaG 417414 waaG 1044049 waaG Pseudomonas putida KT2440 lipopolysaccharide core biosynthesis protein WaaG NP_742510.1 416290 D 160488 CDS NP_742511.1 26987086 1044050 417411..418217 1 NC_002947.3 similar to GP:4210950; identified by sequence similarity; lipopolysaccharide kinase 418217 waaP 1044050 waaP Pseudomonas putida KT2440 lipopolysaccharide kinase NP_742511.1 417411 D 160488 CDS NP_742512.1 26987087 1044051 418217..418951 1 NC_002947.3 lipopolysaccharide kinase 418951 1044051 PP_0345 Pseudomonas putida KT2440 lipopolysaccharide kinase NP_742512.1 418217 D 160488 CDS NP_742513.1 26987088 1044052 418948..419700 1 NC_002947.3 similar to GP:4323000; identified by sequence similarity; lipopolysaccharide kinase 419700 1044052 PP_0346 Pseudomonas putida KT2440 lipopolysaccharide kinase NP_742513.1 418948 D 160488 CDS NP_742514.1 26987089 1044053 419700..421142 1 NC_002947.3 hypothetical protein 421142 1044053 PP_0347 Pseudomonas putida KT2440 hypothetical protein NP_742514.1 419700 D 160488 CDS NP_742515.1 26987090 1044054 complement(421160..423946) 1 NC_002947.3 hypothetical protein 423946 1044054 PP_0348 Pseudomonas putida KT2440 hypothetical protein NP_742515.1 421160 R 160488 CDS NP_742516.1 26987091 1044056 complement(424196..425308) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03929; PepSY-associated TM helix domain-containing protein 425308 1044056 PP_0349 Pseudomonas putida KT2440 PepSY-associated TM helix domain-containing protein NP_742516.1 424196 R 160488 CDS NP_742517.1 26987092 1044057 complement(425365..427797) 1 NC_002947.3 similar to GB:M31516, GB:M30142, SP:P08174, and PID:181476; identified by sequence similarity; TonB-dependent siderophore receptor 427797 1044057 PP_0350 Pseudomonas putida KT2440 TonB-dependent siderophore receptor NP_742517.1 425365 R 160488 CDS NP_742518.1 26987093 1044058 complement(428049..429005) 1 NC_002947.3 FecR anti-FecI sigma factor 429005 1044058 PP_0351 Pseudomonas putida KT2440 FecR anti-FecI sigma factor NP_742518.1 428049 R 160488 CDS NP_742519.1 26987094 1044059 complement(429002..429520) 1 NC_002947.3 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in P. aeruginosa this sigma factor regulates the production of the ferrichrome outer membrane receptor FiuA.; RNA polymerase sigma factor 429520 1044059 PP_0352 Pseudomonas putida KT2440 RNA polymerase sigma factor NP_742519.1 429002 R 160488 CDS NP_742520.1 26987095 1044060 complement(429668..430378) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00573; DNA polymerase III subunit epsilon 430378 1044060 PP_0353 Pseudomonas putida KT2440 DNA polymerase III subunit epsilon NP_742520.1 429668 R 160488 CDS NP_742521.1 26987096 1044061 complement(430375..432312) 1 NC_002947.3 similar to GB:K00431, SP:P02929, PID:148023, PID:902383, PID:902392, PID:902401, PID:902410, PID:902419, PID:902428, PID:902437, PID:902446, PID:902455, PID:902464, PID:902473, PID:902482, GB:U00096, PID:1742041, and PID:1787505; identified by sequence similarity; hypothetical protein 432312 1044061 PP_0354 Pseudomonas putida KT2440 hypothetical protein NP_742521.1 430375 R 160488 CDS NP_742522.1 26987097 1044062 432405..432974 1 NC_002947.3 similar to GB:X74448, and SP:P43448; identified by sequence similarity; response regulator receiver protein 432974 1044062 PP_0355 Pseudomonas putida KT2440 response regulator receiver protein NP_742522.1 432405 D 160488 CDS NP_742523.1 26987098 1044063 complement(433021..435198) 1 NC_002947.3 catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 435198 glcB 1044063 glcB Pseudomonas putida KT2440 malate synthase G NP_742523.1 433021 R 160488 CDS NP_742524.1 26987099 1044064 435648..436166 1 NC_002947.3 identified by match to PFAM protein family HMM PF01842; ACT domain-containing protein 436166 1044064 PP_0357 Pseudomonas putida KT2440 ACT domain-containing protein NP_742524.1 435648 D 160488 CDS NP_742525.1 26987100 1044065 complement(436399..437286) 1 NC_002947.3 similar to SP:P27844, GB:X74448, and SP:P43448; identified by sequence similarity; RarD protein, DMT superfamily transporter 437286 rarD-1 1044065 rarD-1 Pseudomonas putida KT2440 RarD protein, DMT superfamily transporter NP_742525.1 436399 R 160488 CDS NP_742526.1 26987101 1044066 complement(437351..438358) 1 NC_002947.3 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 438358 1044066 PP_0359 Pseudomonas putida KT2440 serine/threonine protein kinase NP_742526.1 437351 R 160488 CDS NP_742527.1 26987102 1044067 complement(438424..439188) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02573; ModE family transcriptional regulator 439188 modR 1044067 modR Pseudomonas putida KT2440 ModE family transcriptional regulator NP_742527.1 438424 R 160488 CDS NP_742528.1 26987103 1044068 complement(439238..439969) 1 NC_002947.3 similar to GP:5921548, and GP:5921548; identified by sequence similarity; competence protein ComF 439969 1044068 PP_0361 Pseudomonas putida KT2440 competence protein ComF NP_742528.1 439238 R 160488 CDS NP_742529.1 26987104 1044069 440059..441117 1 NC_002947.3 similar to GB:L05091, GB:U58682, SP:P25112, PID:1518637, and PID:337403; identified by sequence similarity; biotin synthase 441117 bioB 1044069 bioB Pseudomonas putida KT2440 biotin synthase NP_742529.1 440059 D 160488 CDS NP_742530.1 26987105 1044070 441119..442291 1 NC_002947.3 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 442291 bioF 1044070 bioF Pseudomonas putida KT2440 8-amino-7-oxononanoate synthase NP_742530.1 441119 D 160488 CDS NP_742531.1 26987106 1044071 442284..443015 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01738; carboxylesterase 443015 bioH 1044071 bioH Pseudomonas putida KT2440 carboxylesterase NP_742531.1 442284 D 160488 CDS NP_742532.1 26987107 1044072 443008..443826 1 NC_002947.3 similar to GB:M57707, GB:M38258, SP:P13631, SP:P22932, PID:190868, PID:190872, and PID:306887; identified by sequence similarity; biotin biosynthesis protein BioC 443826 bioC 1044072 bioC Pseudomonas putida KT2440 biotin biosynthesis protein BioC NP_742532.1 443008 D 160488 CDS NP_742533.1 26987108 1044073 443837..444517 1 NC_002947.3 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 444517 bioD 1044073 bioD Pseudomonas putida KT2440 dithiobiotin synthetase NP_742533.1 443837 D 160488 CDS NP_742534.1 26987109 1044075 444691..445026 1 NC_002947.3 similar to GP:9946369, and GP:9946369; identified by sequence similarity; hypothetical protein 445026 1044075 PP_0367 Pseudomonas putida KT2440 hypothetical protein NP_742534.1 444691 D 160488 CDS NP_742535.1 26987110 1044076 445314..447119 1 NC_002947.3 identified by match to PFAM protein family HMM PF00441; acyl-CoA dehydrogenase 447119 1044076 PP_0368 Pseudomonas putida KT2440 acyl-CoA dehydrogenase NP_742535.1 445314 D 160488 CDS NP_742536.1 26987111 1044078 447502..448704 1 NC_002947.3 identified by match to PFAM protein family HMM PF00990; diguanylate cyclase 448704 1044078 PP_0369 Pseudomonas putida KT2440 diguanylate cyclase NP_742536.1 447502 D 160488 CDS NP_742537.1 26987112 1044079 448829..450607 1 NC_002947.3 identified by match to PFAM protein family HMM PF00441; acyl-CoA dehydrogenase 450607 1044079 PP_0370 Pseudomonas putida KT2440 acyl-CoA dehydrogenase NP_742537.1 448829 D 160488 CDS NP_742538.1 26987113 1044080 complement(450948..451871) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 451871 1044080 PP_0371 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_742538.1 450948 R 160488 CDS NP_742539.1 26987114 1044081 452082..453362 1 NC_002947.3 similar to SP:P18335; identified by sequence similarity; class III aminotransferase 453362 1044081 PP_0372 Pseudomonas putida KT2440 class III aminotransferase NP_742539.1 452082 D 160488 CDS NP_742540.1 26987115 1044082 453510..453668 1 NC_002947.3 similar to SP:Q05067, and PID:289135; identified by sequence similarity; hypothetical protein 453668 1044082 PP_0373 Pseudomonas putida KT2440 hypothetical protein NP_742540.1 453510 D 160488 CDS NP_742541.1 26987116 1044083 454297..454455 1 NC_002947.3 hypothetical protein 454455 1044083 PP_0374 Pseudomonas putida KT2440 hypothetical protein NP_742541.1 454297 D 160488 CDS NP_742542.1 26987117 1044084 complement(454815..456653) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01738; prolyl oligopeptidase 456653 1044084 PP_0375 Pseudomonas putida KT2440 prolyl oligopeptidase NP_742542.1 454815 R 160488 CDS NP_742543.1 26987118 1044086 complement(456619..457749) 1 NC_002947.3 similar to GB:L19999, GB:L19955, GB:X84654, GB:L15346, GB:U72196, SP:P50224, SP:P50225, SP:P50226, PID:1314740, PID:1575788, PID:179042, PID:1907312, PID:306455, PID:307343, PID:488285, PID:495487, PID:553649, PID:671534, PID:671642, PID:736379, PID:758595, PID:758597, PID:847763, PID:881503, and PID:881505; identified by sequence similarity; pyrroloquinoline quinone biosynthesis protein PqqE 457749 pqqE 1044086 pqqE Pseudomonas putida KT2440 pyrroloquinoline quinone biosynthesis protein PqqE NP_742543.1 456619 R 160488 CDS NP_742544.1 26987119 1044087 complement(457751..458026) 1 NC_002947.3 with PqqC converts a biosynthetic intermediate to pyrroloquinoline quinone; pyrroloquinoline quinone biosynthesis protein PqqD 458026 pqqD 1044087 pqqD Pseudomonas putida KT2440 pyrroloquinoline quinone biosynthesis protein PqqD NP_742544.1 457751 R 160488 CDS NP_742545.1 26987120 1044088 complement(458023..458778) 1 NC_002947.3 Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC 458778 pqqC 1044088 pqqC Pseudomonas putida KT2440 pyrroloquinoline quinone biosynthesis protein PqqC NP_742545.1 458023 R 160488 CDS NP_742546.1 26987121 1044089 complement(458942..459853) 1 NC_002947.3 possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB 459853 pqqB 1044089 pqqB Pseudomonas putida KT2440 pyrroloquinoline quinone biosynthesis protein PqqB NP_742546.1 458942 R 160488 CDS NP_742547.1 26987122 1044090 complement(459932..460003) 1 NC_002947.3 Required for coenzyme pyrroloquinoline quinone (PQQ) biosynthesis; probably provides the glutamate and tyrosine residues that are cross-linked and modified to form the coenzyme; coenzyme PQQ synthesis protein PqqA 460003 pqqA 1044090 pqqA Pseudomonas putida KT2440 coenzyme PQQ synthesis protein PqqA NP_742547.1 459932 R 160488 CDS NP_742548.1 26987123 1044091 complement(460163..462463) 1 NC_002947.3 similar to GB:U09073, GB:U09074, PID:483888, PID:483890, PID:483904, GB:U09073, GB:U09074, PID:483888, PID:483890, and PID:483904; identified by sequence similarity; coenzyme PQQ biosynthesis protein PqqF 462463 pqqF 1044091 pqqF Pseudomonas putida KT2440 coenzyme PQQ biosynthesis protein PqqF NP_742548.1 460163 R 160488 CDS NP_742549.1 26987124 1044092 complement(462604..463398) 1 NC_002947.3 similar to GB:X51518, SP:P15107, and PID:65259; identified by sequence similarity; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 463398 1044092 PP_0382 Pseudomonas putida KT2440 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase NP_742549.1 462604 R 160488 CDS NP_742550.1 26987125 1044093 complement(463413..465095) 1 NC_002947.3 similar to GP:7209214, GB:M27389, PID:2218046, PID:292791, and PID:975615; identified by sequence similarity; amine oxidase 465095 1044093 PP_0383 Pseudomonas putida KT2440 amine oxidase NP_742550.1 463413 R 160488 CDS NP_742551.1 26987126 1044094 complement(465349..465810) 1 NC_002947.3 similar to GB:X64062, SP:Q00637, PID:1335657, and PID:409457; identified by sequence similarity; AsnC family transcriptional regulator 465810 1044094 PP_0384 Pseudomonas putida KT2440 AsnC family transcriptional regulator NP_742551.1 465349 R 160488 CDS NP_742552.1 26987127 1044095 465998..466552 1 NC_002947.3 similar to GP:6009396; identified by sequence similarity; hypothetical protein 466552 1044095 PP_0385 Pseudomonas putida KT2440 hypothetical protein NP_742552.1 465998 D 160488 CDS NP_742553.1 26987128 1044096 complement(467212..470955) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; sensory box protein 470955 1044096 PP_0386 Pseudomonas putida KT2440 sensory box protein NP_742553.1 467212 R 160488 CDS NP_742554.1 26987129 1044097 complement(471083..472933) 1 NC_002947.3 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 472933 rpoD 1044097 rpoD Pseudomonas putida KT2440 RNA polymerase sigma factor RpoD NP_742554.1 471083 R 160488 CDS NP_742555.1 26987130 1044100 complement(473001..474983) 1 NC_002947.3 synthesizes RNA primers at the replication forks; DNA primase 474983 dnaG 1044100 dnaG Pseudomonas putida KT2440 DNA primase NP_742555.1 473001 R 160488 CDS NP_742556.1 26987131 1044101 complement(475288..475503) 1 NC_002947.3 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 475503 rpsU 1044101 rpsU Pseudomonas putida KT2440 30S ribosomal protein S21 NP_742556.1 475288 R 160488 CDS NP_742557.1 26987132 1044102 475708..476733 1 NC_002947.3 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 476733 gcp 1044102 gcp Pseudomonas putida KT2440 DNA-binding/iron metalloprotein/AP endonuclease NP_742557.1 475708 D 160488 CDS NP_742558.1 26987133 1044103 complement(476751..477320) 1 NC_002947.3 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY 477320 1044103 PP_0391 Pseudomonas putida KT2440 glycerol-3-phosphate acyltransferase PlsY NP_742558.1 476751 R 160488 CDS NP_742559.1 26987134 1044104 477395..477751 1 NC_002947.3 similar to SP:P31055; identified by sequence similarity; dihydroneopterin aldolase 477751 folB 1044104 folB Pseudomonas putida KT2440 dihydroneopterin aldolase NP_742559.1 477395 D 160488 CDS NP_742560.1 26987135 1044106 477742..478251 1 NC_002947.3 similar to SP:O66550; identified by sequence similarity; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 478251 folK-1 1044106 folK-1 Pseudomonas putida KT2440 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase NP_742560.1 477742 D 160488 CDS NP_742561.1 26987136 1044107 complement(478361..479467) 1 NC_002947.3 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 479467 cca 1044107 cca Pseudomonas putida KT2440 multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase NP_742561.1 478361 R 160488 CDS NP_742562.1 26987137 1044108 complement(479523..481091) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04293; SpoVR family protein 481091 1044108 PP_0395 Pseudomonas putida KT2440 SpoVR family protein NP_742562.1 479523 R 160488 CDS NP_742563.1 26987138 1044110 complement(481088..482410) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04285; hypothetical protein 482410 1044110 PP_0396 Pseudomonas putida KT2440 hypothetical protein NP_742563.1 481088 R 160488 CDS NP_742564.1 26987139 1044111 complement(482515..484437) 1 NC_002947.3 serine protein kinase PrkA 484437 1044111 PP_0397 Pseudomonas putida KT2440 serine protein kinase PrkA NP_742564.1 482515 R 160488 CDS NP_742565.1 26987140 1044112 complement(484720..485052) 1 NC_002947.3 belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase 485052 glpE 1044112 glpE Pseudomonas putida KT2440 thiosulfate sulfurtransferase NP_742565.1 484720 R 160488 CDS NP_742566.1 26987141 1044113 complement(485067..485933) 1 NC_002947.3 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 485933 apaH 1044113 apaH Pseudomonas putida KT2440 diadenosine tetraphosphatase NP_742566.1 485067 R 160488 CDS NP_742567.1 26987142 1044114 complement(485933..486313) 1 NC_002947.3 protein associated with Co2+ and Mg2+ efflux; ApaG protein 486313 apaG 1044114 apaG Pseudomonas putida KT2440 ApaG protein NP_742567.1 485933 R 160488 CDS NP_742568.1 26987143 1044115 complement(486511..487314) 1 NC_002947.3 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 487314 ksgA 1044115 ksgA Pseudomonas putida KT2440 dimethyladenosine transferase NP_742568.1 486511 R 160488 CDS NP_742569.1 26987144 1044116 complement(487311..488300) 1 NC_002947.3 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 488300 pdxA 1044116 pdxA Pseudomonas putida KT2440 4-hydroxythreonine-4-phosphate dehydrogenase NP_742569.1 487311 R 160488 CDS NP_742570.1 26987145 1044118 complement(488297..489616) 1 NC_002947.3 similar to GB:J03278, GB:M30493, SP:P09619, PID:189730, PID:189732, PID:2107947, and PID:532593; identified by sequence similarity; survival protein SurA 489616 surA 1044118 surA Pseudomonas putida KT2440 survival protein SurA NP_742570.1 488297 R 160488 CDS NP_742571.1 26987146 1044120 492549..493568 1 NC_002947.3 similar to GP:4545243, and GP:4545243; identified by sequence similarity; aminoglycoside phosphotransferase 493568 1044120 PP_0405 Pseudomonas putida KT2440 aminoglycoside phosphotransferase NP_742571.1 492549 D 160488 CDS NP_742572.1 26987147 1044121 493565..494236 1 NC_002947.3 similar to GP:4545244; identified by sequence similarity; nucleotidyl transferase 494236 1044121 PP_0406 Pseudomonas putida KT2440 nucleotidyl transferase NP_742572.1 493565 D 160488 CDS NP_742573.1 26987148 1044124 494238..495005 1 NC_002947.3 similar to GB:L10126, GB:L31848, SP:P36896, PID:338215, PID:555934, PID:576681, PID:576682, and PID:576683; identified by sequence similarity; molecular chaperone DnaJ 495005 djlA 1044124 djlA Pseudomonas putida KT2440 molecular chaperone DnaJ NP_742573.1 494238 D 160488 CDS NP_742574.1 26987149 1044128 complement(495033..496031) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00070; hypothetical protein 496031 1044128 PP_0408 Pseudomonas putida KT2440 hypothetical protein NP_742574.1 495033 R 160488 CDS NP_742575.1 26987150 1044129 496127..498514 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00229; PAS/PAC sensor signal transduction histidine kinase 498514 1044129 PP_0409 Pseudomonas putida KT2440 PAS/PAC sensor signal transduction histidine kinase NP_742575.1 496127 D 160488 CDS NP_742576.1 26987151 1044130 498525..499154 1 NC_002947.3 similar to GB:X64624, SP:Q01851, PID:35915, PID:508494, and PID:602106; identified by sequence similarity; LuxR family transcriptional regulator 499154 uhpA 1044130 uhpA Pseudomonas putida KT2440 LuxR family transcriptional regulator NP_742576.1 498525 D 160488 CDS NP_742577.1 26987152 1044131 499450..500574 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00968; spermidine/putrescine ABC transporter ATPase 500574 1044131 PP_0411 Pseudomonas putida KT2440 spermidine/putrescine ABC transporter ATPase NP_742577.1 499450 D 160488 CDS NP_742578.1 26987153 1044134 500615..501649 1 NC_002947.3 identified by match to PFAM protein family HMM PF01547; polyamine ABC transporter substrate-binding protein 501649 1044134 PP_0412 Pseudomonas putida KT2440 polyamine ABC transporter substrate-binding protein NP_742578.1 500615 D 160488 CDS NP_742579.1 26987154 1044135 501710..502957 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01581; binding-protein-dependent transport system inner membrane protein 502957 1044135 PP_0413 Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_742579.1 501710 D 160488 CDS NP_742580.1 26987155 1044136 502968..503795 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01095; binding-protein-dependent transport system inner membrane protein 503795 1044136 PP_0414 Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_742580.1 502968 D 160488 CDS NP_742581.1 26987156 1044137 503853..504620 1 NC_002947.3 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 504620 rpe 1044137 rpe Pseudomonas putida KT2440 ribulose-phosphate 3-epimerase NP_742581.1 503853 D 160488 CDS NP_742582.1 26987157 1044138 504617..505435 1 NC_002947.3 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 505435 gph 1044138 gph Pseudomonas putida KT2440 phosphoglycolate phosphatase NP_742582.1 504617 D 160488 CDS NP_742583.1 26987158 1044140 505505..506986 1 NC_002947.3 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 506986 trpE 1044140 trpE Pseudomonas putida KT2440 anthranilate synthase component I NP_742583.1 505505 D 160488 CDS NP_742584.1 26987159 1044141 complement(507119..509008) 1 NC_002947.3 similar to GB:L19158, GB:D26443, GB:U03504, GB:Z31713, SP:P43003, PID:487339, PID:607113, PID:825504, and PID:825663; identified by sequence similarity; GDSL family lipase 509008 1044141 PP_0418 Pseudomonas putida KT2440 GDSL family lipase NP_742584.1 507119 R 160488 CDS NP_742585.1 26987160 1044143 509142..509240 1 NC_002947.3 hypothetical protein 509240 1044143 PP_0419 Pseudomonas putida KT2440 hypothetical protein NP_742585.1 509142 D 160488 CDS NP_742586.1 26987161 1044144 509376..509969 1 NC_002947.3 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 509969 trpG 1044144 trpG Pseudomonas putida KT2440 anthranilate synthase component II NP_742586.1 509376 D 160488 CDS NP_742587.1 26987162 1044145 509979..511028 1 NC_002947.3 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 511028 trpD 1044145 trpD Pseudomonas putida KT2440 anthranilate phosphoribosyltransferase NP_742587.1 509979 D 160488 CDS NP_742588.1 26987163 1044149 511025..511858 1 NC_002947.3 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol phosphate synthase 511858 trpC 1044149 trpC Pseudomonas putida KT2440 indole-3-glycerol phosphate synthase NP_742588.1 511025 D 160488 CDS NP_742589.1 26987164 1044151 512006..512710 1 NC_002947.3 identified by match to PFAM protein family HMM PF03099; hypothetical protein 512710 1044151 PP_0423 Pseudomonas putida KT2440 hypothetical protein NP_742589.1 512006 D 160488 CDS NP_742590.1 26987165 1044152 complement(512707..513351) 1 NC_002947.3 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 513351 crp 1044152 crp Pseudomonas putida KT2440 cAMP-regulatory protein NP_742590.1 512707 R 160488 CDS NP_742591.1 26987166 1044153 513542..513964 1 NC_002947.3 similar to GB:L32172, PID:476013, GB:L32172, and PID:476013; identified by sequence similarity; OsmC family protein 513964 1044153 PP_0425 Pseudomonas putida KT2440 OsmC family protein NP_742591.1 513542 D 160488 CDS NP_742592.1 26987167 1044155 complement(514041..515081) 1 NC_002947.3 similar to GB:L37080, SP:P49326, PID:559046, PID:623242, GB:L37080, SP:P49326, PID:559046, and PID:623242; identified by sequence similarity; hypothetical protein 515081 1044155 PP_0426 Pseudomonas putida KT2440 hypothetical protein NP_742592.1 514041 R 160488 CDS NP_742593.1 26987168 1044156 complement(515092..515739) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03232; hypothetical protein 515739 1044156 PP_0427 Pseudomonas putida KT2440 hypothetical protein NP_742593.1 515092 R 160488 CDS NP_742594.1 26987169 1044157 complement(515805..516143) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01230; histidine triad (HIT) protein 516143 1044157 PP_0428 Pseudomonas putida KT2440 histidine triad (HIT) protein NP_742594.1 515805 R 160488 CDS NP_742595.1 26987170 1044158 complement(516207..516989) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 516989 1044158 PP_0429 Pseudomonas putida KT2440 short chain dehydrogenase/reductase oxidoreductase NP_742595.1 516207 R 160488 CDS NP_742596.1 26987171 1044160 complement(517057..518013) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03060; hypothetical protein 518013 1044160 PP_0430 Pseudomonas putida KT2440 hypothetical protein NP_742596.1 517057 R 160488 CDS NP_742597.1 26987172 1044163 complement(518042..518467) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03653; hypothetical protein 518467 1044163 PP_0431 Pseudomonas putida KT2440 hypothetical protein NP_742597.1 518042 R 160488 CDS NP_742598.1 26987173 1044164 518610..519644 1 NC_002947.3 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 519644 argC 1044164 argC Pseudomonas putida KT2440 N-acetyl-gamma-glutamyl-phosphate reductase NP_742598.1 518610 D 160488 CDS NP_742599.1 26987174 1044165 519744..520142 1 NC_002947.3 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 520142 1044165 PP_0433 Pseudomonas putida KT2440 iron-sulfur cluster insertion protein ErpA NP_742599.1 519744 D 160488 CDS NP_742600.1 26987175 1044166 complement(520202..521293) 1 NC_002947.3 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 521293 anmK 1044166 anmK Pseudomonas putida KT2440 anhydro-N-acetylmuramic acid kinase NP_742600.1 520202 R 160488 CDS NP_742601.1 26987176 1044168 complement(521297..522724) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04225; M24/M37 family peptidase 522724 1044168 PP_0435 Pseudomonas putida KT2440 M24/M37 family peptidase NP_742601.1 521297 R 160488 CDS NP_742602.1 26987177 1044169 522932..524131 1 NC_002947.3 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 524131 tyrS 1044169 tyrS Pseudomonas putida KT2440 tyrosyl-tRNA synthetase NP_742602.1 522932 D 160488 CDS NP_742603.1 26987178 1044177 530085..531044 1 NC_002947.3 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 531044 birA 1044177 birA Pseudomonas putida KT2440 biotin--protein ligase NP_742603.1 530085 D 160488 CDS NP_742604.1 26987179 1044178 531034..531783 1 NC_002947.3 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 531783 1044178 PP_0438 Pseudomonas putida KT2440 pantothenate kinase NP_742604.1 531034 D 160488 CDS NP_742605.1 26987180 1044179 531752..532216 1 NC_002947.3 hypothetical protein 532216 1044179 PP_0439 Pseudomonas putida KT2440 hypothetical protein NP_742605.1 531752 D 160488 CDS NP_742606.1 26987181 1044182 532734..533927 1 NC_002947.3 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 533927 tuf 1044182 tuf Pseudomonas putida KT2440 elongation factor Tu NP_742606.1 532734 D 160488 CDS NP_742607.1 26987182 1044184 534102..534470 1 NC_002947.3 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 534470 secE 1044184 secE Pseudomonas putida KT2440 preprotein translocase subunit SecE NP_742607.1 534102 D 160488 CDS NP_742608.1 26987183 1044185 534480..535013 1 NC_002947.3 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 535013 nusG 1044185 nusG Pseudomonas putida KT2440 transcription antitermination protein NusG NP_742608.1 534480 D 160488 CDS NP_742609.1 26987184 1044186 535133..535564 1 NC_002947.3 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 535564 rplK 1044186 rplK Pseudomonas putida KT2440 50S ribosomal protein L11 NP_742609.1 535133 D 160488 CDS NP_742610.1 26987185 1044187 535564..536259 1 NC_002947.3 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 536259 rplA 1044187 rplA Pseudomonas putida KT2440 50S ribosomal protein L1 NP_742610.1 535564 D 160488 CDS NP_742611.1 26987186 1044188 536457..536957 1 NC_002947.3 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 536957 rplJ 1044188 rplJ Pseudomonas putida KT2440 50S ribosomal protein L10 NP_742611.1 536457 D 160488 CDS NP_742612.1 26987187 1044189 537035..537400 1 NC_002947.3 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 537400 rplL 1044189 rplL Pseudomonas putida KT2440 50S ribosomal protein L7/L12 NP_742612.1 537035 D 160488 CDS NP_742613.1 26987188 1044190 537621..541694 1 NC_002947.3 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 541694 rpoB 1044190 rpoB Pseudomonas putida KT2440 DNA-directed RNA polymerase subunit beta NP_742613.1 537621 D 160488 CDS NP_742614.1 26987189 1044191 541759..545958 1 NC_002947.3 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 545958 rpoC 1044191 rpoC Pseudomonas putida KT2440 DNA-directed RNA polymerase subunit beta' NP_742614.1 541759 D 160488 CDS NP_742615.1 26987190 1044192 546170..546541 1 NC_002947.3 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 546541 rpsL 1044192 rpsL Pseudomonas putida KT2440 30S ribosomal protein S12 NP_742615.1 546170 D 160488 CDS NP_742616.1 26987191 1044193 546648..547118 1 NC_002947.3 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 547118 rpsG 1044193 rpsG Pseudomonas putida KT2440 30S ribosomal protein S7 NP_742616.1 546648 D 160488 CDS NP_742617.1 26987192 1044195 547149..549296 1 NC_002947.3 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 549296 fusA 1044195 fusA Pseudomonas putida KT2440 elongation factor G NP_742617.1 547149 D 160488 CDS NP_742618.1 26987193 1044196 549324..550517 1 NC_002947.3 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 550517 tuf 1044196 tuf Pseudomonas putida KT2440 elongation factor Tu NP_742618.1 549324 D 160488 CDS NP_742619.1 26987194 1044199 550659..550970 1 NC_002947.3 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 550970 rpsJ 1044199 rpsJ Pseudomonas putida KT2440 30S ribosomal protein S10 NP_742619.1 550659 D 160488 CDS NP_742620.2 161378147 1044200 551051..551686 1 NC_002947.3 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 551686 rplC 1044200 rplC Pseudomonas putida KT2440 50S ribosomal protein L3 NP_742620.2 551051 D 160488 CDS NP_742621.1 26987196 1044201 551699..552301 1 NC_002947.3 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 552301 rplD 1044201 rplD Pseudomonas putida KT2440 50S ribosomal protein L4 NP_742621.1 551699 D 160488 CDS NP_742622.1 26987197 1044202 552298..552597 1 NC_002947.3 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 552597 rplW 1044202 rplW Pseudomonas putida KT2440 50S ribosomal protein L23 NP_742622.1 552298 D 160488 CDS NP_742623.1 26987198 1044203 552612..553436 1 NC_002947.3 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 553436 rplB 1044203 rplB Pseudomonas putida KT2440 50S ribosomal protein L2 NP_742623.1 552612 D 160488 CDS NP_742624.1 26987199 1044204 553453..553728 1 NC_002947.3 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 553728 rpsS 1044204 rpsS Pseudomonas putida KT2440 30S ribosomal protein S19 NP_742624.1 553453 D 160488 CDS NP_742625.1 26987200 1044206 553740..554072 1 NC_002947.3 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 554072 rplV 1044206 rplV Pseudomonas putida KT2440 50S ribosomal protein L22 NP_742625.1 553740 D 160488 CDS NP_742626.2 161378146 1044209 554086..554772 1 NC_002947.3 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 554772 rpsC 1044209 rpsC Pseudomonas putida KT2440 30S ribosomal protein S3 NP_742626.2 554086 D 160488 CDS NP_742627.1 26987202 1044210 554785..555198 1 NC_002947.3 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 555198 rplP 1044210 rplP Pseudomonas putida KT2440 50S ribosomal protein L16 NP_742627.1 554785 D 160488 CDS NP_742628.2 161378145 1044212 555198..555389 1 NC_002947.3 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 555389 rpmC 1044212 rpmC Pseudomonas putida KT2440 50S ribosomal protein L29 NP_742628.2 555198 D 160488 CDS NP_742629.1 26987204 1044213 555392..555658 1 NC_002947.3 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 555658 rpsQ 1044213 rpsQ Pseudomonas putida KT2440 30S ribosomal protein S17 NP_742629.1 555392 D 160488 CDS NP_742630.1 26987205 1044219 555682..556050 1 NC_002947.3 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 556050 rplN 1044219 rplN Pseudomonas putida KT2440 50S ribosomal protein L14 NP_742630.1 555682 D 160488 CDS NP_742631.1 26987206 1044221 556062..556376 1 NC_002947.3 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 556376 rplX 1044221 rplX Pseudomonas putida KT2440 50S ribosomal protein L24 NP_742631.1 556062 D 160488 CDS NP_742632.1 26987207 1044223 556397..556936 1 NC_002947.3 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 556936 rplE 1044223 rplE Pseudomonas putida KT2440 50S ribosomal protein L5 NP_742632.1 556397 D 160488 CDS NP_742633.1 26987208 1044225 556950..557255 1 NC_002947.3 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 557255 rpsN 1044225 rpsN Pseudomonas putida KT2440 30S ribosomal protein S14 NP_742633.1 556950 D 160488 CDS NP_742634.1 26987209 1044227 557464..557856 1 NC_002947.3 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 557856 rpsH 1044227 rpsH Pseudomonas putida KT2440 30S ribosomal protein S8 NP_742634.1 557464 D 160488 CDS NP_742635.1 26987210 1044228 557869..558402 1 NC_002947.3 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 558402 rplF 1044228 rplF Pseudomonas putida KT2440 50S ribosomal protein L6 NP_742635.1 557869 D 160488 CDS NP_742636.1 26987211 1044230 558413..558763 1 NC_002947.3 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 558763 rplR 1044230 rplR Pseudomonas putida KT2440 50S ribosomal protein L18 NP_742636.1 558413 D 160488 CDS NP_742637.1 26987212 1044231 558767..559267 1 NC_002947.3 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 559267 rpsE 1044231 rpsE Pseudomonas putida KT2440 30S ribosomal protein S5 NP_742637.1 558767 D 160488 CDS NP_742638.1 26987213 1044235 559270..559446 1 NC_002947.3 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 559446 rpmD 1044235 rpmD Pseudomonas putida KT2440 50S ribosomal protein L30 NP_742638.1 559270 D 160488 CDS NP_742639.1 26987214 1044238 559450..559884 1 NC_002947.3 late assembly protein; 50S ribosomal protein L15 559884 rplO 1044238 rplO Pseudomonas putida KT2440 50S ribosomal protein L15 NP_742639.1 559450 D 160488 CDS NP_742640.1 26987215 1044239 559885..561216 1 NC_002947.3 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 561216 secY 1044239 secY Pseudomonas putida KT2440 preprotein translocase subunit SecY NP_742640.1 559885 D 160488 CDS NP_742641.1 26987216 1044240 561245..561361 1 NC_002947.3 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 561361 rpmJ 1044240 rpmJ Pseudomonas putida KT2440 50S ribosomal protein L36 NP_742641.1 561245 D 160488 CDS NP_742642.1 26987217 1044241 561493..561849 1 NC_002947.3 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 561849 rpsM 1044241 rpsM Pseudomonas putida KT2440 30S ribosomal protein S13 NP_742642.1 561493 D 160488 CDS NP_742643.1 26987218 1044242 561868..562257 1 NC_002947.3 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 562257 rpsK 1044242 rpsK Pseudomonas putida KT2440 30S ribosomal protein S11 NP_742643.1 561868 D 160488 CDS NP_742644.1 26987219 1044244 562273..562893 1 NC_002947.3 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 562893 rpsD 1044244 rpsD Pseudomonas putida KT2440 30S ribosomal protein S4 NP_742644.1 562273 D 160488 CDS NP_742645.1 26987220 1044246 562916..563917 1 NC_002947.3 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 563917 rpoA 1044246 rpoA Pseudomonas putida KT2440 DNA-directed RNA polymerase subunit alpha NP_742645.1 562916 D 160488 CDS NP_742646.1 26987221 1044247 563960..564346 1 NC_002947.3 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 564346 rplQ 1044247 rplQ Pseudomonas putida KT2440 50S ribosomal protein L17 NP_742646.1 563960 D 160488 CDS NP_742647.1 26987222 1044248 564519..565958 1 NC_002947.3 similar to GB:M63346, SP:P24754, GB:M63347, PID:146987, PID:146995, GB:U03100, GB:D14705, GB:L22080, GB:D13866, SP:P35221, PID:1172426, PID:347316, PID:404105, and PID:433411; identified by sequence similarity; catalase 565958 katA 1044248 katA Pseudomonas putida KT2440 catalase NP_742647.1 564519 D 160488 CDS NP_742648.1 26987223 1044249 566122..566586 1 NC_002947.3 similar to SP:P28017, GB:X62377, and PID:39657; identified by sequence similarity; bacterioferritin 566586 1044249 PP_0482 Pseudomonas putida KT2440 bacterioferritin NP_742648.1 566122 D 160488 CDS NP_742649.1 26987224 1044250 complement(566659..569493) 1 NC_002947.3 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 569493 uvrA 1044250 uvrA Pseudomonas putida KT2440 excinuclease ABC subunit A NP_742649.1 566659 R 160488 CDS NP_742650.1 26987225 1044254 569623..571017 1 NC_002947.3 identified by match to PFAM protein family HMM PF03605; major facilitator family transporter 571017 1044254 PP_0484 Pseudomonas putida KT2440 major facilitator family transporter NP_742650.1 569623 D 160488 CDS NP_742651.1 26987226 1044255 571027..571572 1 NC_002947.3 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 571572 ssb 1044255 ssb Pseudomonas putida KT2440 single-stranded DNA-binding protein NP_742651.1 571027 D 160488 CDS NP_742652.1 26987227 1044256 complement(571663..573087) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00155; GntR family transcriptional regulator 573087 1044256 PP_0486 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_742652.1 571663 R 160488 CDS NP_742653.1 26987228 1044257 573234..574031 1 NC_002947.3 similar to SP:P46490, GB:X54107, and PID:48759; identified by sequence similarity; hypothetical protein 574031 1044257 PP_0487 Pseudomonas putida KT2440 hypothetical protein NP_742653.1 573234 D 160488 CDS NP_742654.1 26987229 1044258 574053..574814 1 NC_002947.3 similar to GB:M20879, GB:M20881, GB:M22437, GB:M93700, GB:M93704, GB:M33664, SP:P11462, SP:P11463, SP:P11464, PID:180239, PID:183482, PID:190591, PID:190624, PID:190636, PID:190645, PID:190653, PID:306791, PID:306796, PID:306797, PID:306798, PID:553624, PID:603453, and PID:904281; identified by sequence similarity; short chain dehydrogenase/reductase oxidoreductase 574814 1044258 PP_0488 Pseudomonas putida KT2440 short chain dehydrogenase/reductase oxidoreductase NP_742654.1 574053 D 160488 CDS NP_742655.1 26987230 1044260 578030..578980 1 NC_002947.3 similar to GB:M61832, GB:M61831, SP:P23526, PID:178277, and PID:178279; identified by sequence similarity; formate dehydrogenase subunit beta 578980 1044260 PP_0490 Pseudomonas putida KT2440 formate dehydrogenase subunit beta NP_742655.1 578030 D 160488 CDS NP_742656.1 26987231 1044261 578977..579633 1 NC_002947.3 similar to GB:D14664, PID:285953, GB:L17326, and PID:306325; identified by sequence similarity; formate dehydrogenase subunit gamma 579633 1044261 PP_0491 Pseudomonas putida KT2440 formate dehydrogenase subunit gamma NP_742656.1 578977 D 160488 CDS NP_742657.1 26987232 1044263 579608..580564 1 NC_002947.3 similar to GB:L16783, PID:1778838, PID:1842253, PID:1842255, and PID:292331; identified by sequence similarity; formate dehydrogenase accessory protein FdhE 580564 1044263 PP_0492 Pseudomonas putida KT2440 formate dehydrogenase accessory protein FdhE NP_742657.1 579608 D 160488 CDS NP_742658.1 26987233 1044264 580709..582136 1 NC_002947.3 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 582136 selA 1044264 selA Pseudomonas putida KT2440 selenocysteine synthase NP_742658.1 580709 D 160488 CDS NP_742659.1 26987234 1044266 582133..584055 1 NC_002947.3 similar to GB:X71125, GB:X67731, SP:Q16769, PID:296949, and PID:525241; identified by sequence similarity; selenocysteine-specific translation elongation factor 584055 selB 1044266 selB Pseudomonas putida KT2440 selenocysteine-specific translation elongation factor NP_742659.1 582133 D 160488 CDS NP_742660.1 26987235 1044267 complement(584264..585253) 1 NC_002947.3 similar to GB:L08424, SP:P50553, and PID:306460; identified by sequence similarity; asparaginase 585253 ansB 1044267 ansB Pseudomonas putida KT2440 asparaginase NP_742660.1 584264 R 160488 CDS NP_742661.1 26987236 1044268 complement(585326..586768) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01235; amino acid carrier protein 586768 1044268 PP_0496 Pseudomonas putida KT2440 amino acid carrier protein NP_742661.1 585326 R 160488 CDS NP_742662.1 26987237 1044269 586947..587756 1 NC_002947.3 identified by match to PFAM protein family HMM PF01381; Cro/CI family transcriptional regulator 587756 1044269 PP_0497 Pseudomonas putida KT2440 Cro/CI family transcriptional regulator NP_742662.1 586947 D 160488 CDS NP_742663.1 26987238 1044270 complement(587768..588643) 1 NC_002947.3 hypothetical protein 588643 1044270 PP_0498 Pseudomonas putida KT2440 hypothetical protein NP_742663.1 587768 R 160488 CDS NP_742664.1 26987239 1044272 589875..590759 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01214; dTDP-4-dehydrorhamnose reductase 590759 1044272 PP_0500 Pseudomonas putida KT2440 dTDP-4-dehydrorhamnose reductase NP_742664.1 589875 D 160488 CDS NP_742665.1 26987240 1044273 590752..591684 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01746; NAD-dependent epimerase/dehydratase 591684 1044273 PP_0501 Pseudomonas putida KT2440 NAD-dependent epimerase/dehydratase NP_742665.1 590752 D 160488 CDS NP_742666.1 26987241 1044274 complement(591715..592158) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03551; HxlR family transcriptional regulator 592158 1044274 PP_0502 Pseudomonas putida KT2440 HxlR family transcriptional regulator NP_742666.1 591715 R 160488 CDS NP_742667.1 26987242 1044275 592261..593466 1 NC_002947.3 identified by match to PFAM protein family HMM PF04087; major facilitator family transporter 593466 1044275 PP_0503 Pseudomonas putida KT2440 major facilitator family transporter NP_742667.1 592261 D 160488 CDS NP_742668.1 26987243 1044277 complement(593454..594137) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03922; OmpW family protein 594137 oprG 1044277 oprG Pseudomonas putida KT2440 OmpW family protein NP_742668.1 593454 R 160488 CDS NP_742669.1 26987244 1044278 complement(594247..594885) 1 NC_002947.3 lipoprotein 594885 1044278 PP_0505 Pseudomonas putida KT2440 lipoprotein NP_742669.1 594247 R 160488 CDS NP_742670.1 26987245 1044279 complement(594886..596151) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03824; hypothetical protein 596151 1044279 PP_0506 Pseudomonas putida KT2440 hypothetical protein NP_742670.1 594886 R 160488 CDS NP_742671.1 26987246 1044280 complement(596151..596861) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00960; ABC transporter ATP-binding protein 596861 1044280 PP_0507 Pseudomonas putida KT2440 ABC transporter ATP-binding protein NP_742671.1 596151 R 160488 CDS NP_742672.1 26987247 1044281 complement(596862..597443) 1 NC_002947.3 hypothetical protein 597443 1044281 PP_0508 Pseudomonas putida KT2440 hypothetical protein NP_742672.1 596862 R 160488 CDS NP_742673.1 26987248 1044283 597574..597918 1 NC_002947.3 hypothetical protein 597918 1044283 PP_0509 Pseudomonas putida KT2440 hypothetical protein NP_742673.1 597574 D 160488 CDS NP_742674.1 26987249 1044284 complement(598070..598942) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00085; thioredoxin 598942 trx-1 1044284 trx-1 Pseudomonas putida KT2440 thioredoxin NP_742674.1 598070 R 160488 CDS NP_742675.1 26987250 1044287 complement(599634..600218) 1 NC_002947.3 hypothetical protein 600218 1044287 PP_0512 Pseudomonas putida KT2440 hypothetical protein NP_742675.1 599634 R 160488 CDS NP_742676.2 161378144 1044288 600187..600651 1 NC_002947.3 similar to GP:9950254; identified by sequence similarity; NrdR family transcriptional regulator 600651 nrdR 1044288 nrdR Pseudomonas putida KT2440 NrdR family transcriptional regulator NP_742676.2 600187 D 160488 CDS NP_742677.1 26987252 1044289 600648..601784 1 NC_002947.3 similar to GB:L08176, GB:L31582, GB:L31583, GB:L31584, GB:L31581, SP:P32248, PID:183485, PID:468316, and PID:468320; identified by sequence similarity; riboflavin biosynthesis protein RibD 601784 ribD 1044289 ribD Pseudomonas putida KT2440 riboflavin biosynthesis protein RibD NP_742677.1 600648 D 160488 CDS NP_742678.1 26987253 1044290 601827..602492 1 NC_002947.3 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 602492 ribE-1 1044290 ribE-1 Pseudomonas putida KT2440 riboflavin synthase subunit alpha NP_742678.1 601827 D 160488 CDS NP_742679.2 228994960 1044291 602511..603602 1 NC_002947.3 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein 603602 ribBA-1 1044291 ribBA-1 Pseudomonas putida KT2440 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein NP_742679.2 602511 D 160488 CDS NP_742680.1 26987255 1044292 603694..604170 1 NC_002947.3 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 604170 ribH 1044292 ribH Pseudomonas putida KT2440 6,7-dimethyl-8-ribityllumazine synthase NP_742680.1 603694 D 160488 CDS NP_742681.1 26987256 1044293 604167..604667 1 NC_002947.3 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 604667 nusB 1044293 nusB Pseudomonas putida KT2440 transcription antitermination protein NusB NP_742681.1 604167 D 160488 CDS NP_742682.1 26987257 1044294 604686..605654 1 NC_002947.3 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 605654 thiL 1044294 thiL Pseudomonas putida KT2440 thiamine monophosphate kinase NP_742682.1 604686 D 160488 CDS NP_742683.1 26987258 1044295 605651..606154 1 NC_002947.3 similar to GP:9950246, and GP:9950246; identified by sequence similarity; phosphatidylglycerophosphatase A 606154 pgpA 1044295 pgpA Pseudomonas putida KT2440 phosphatidylglycerophosphatase A NP_742683.1 605651 D 160488 CDS NP_742684.1 26987259 1044296 606171..606914 1 NC_002947.3 identified by match to PFAM protein family HMM PF00497; hypothetical protein 606914 1044296 PP_0521 Pseudomonas putida KT2440 hypothetical protein NP_742684.1 606171 D 160488 CDS NP_742685.1 26987260 1044298 607095..607712 1 NC_002947.3 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 607712 ribA 1044298 ribA Pseudomonas putida KT2440 GTP cyclohydrolase II NP_742685.1 607095 D 160488 CDS NP_742686.1 26987261 1044299 607709..608128 1 NC_002947.3 similar to GP:9950242; identified by sequence similarity; hypothetical protein 608128 1044299 PP_0523 Pseudomonas putida KT2440 hypothetical protein NP_742686.1 607709 D 160488 CDS NP_742687.1 26987262 1044300 608128..608940 1 NC_002947.3 similar to GP:4063695; identified by sequence similarity; hypothetical protein 608940 1044300 PP_0524 Pseudomonas putida KT2440 hypothetical protein NP_742687.1 608128 D 160488 CDS NP_742688.1 26987263 1044301 complement(608918..610843) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00593; B12 family TonB-dependent receptor 610843 1044301 PP_0525 Pseudomonas putida KT2440 B12 family TonB-dependent receptor NP_742688.1 608918 R 160488 CDS NP_742689.1 26987264 1044302 611102..612067 1 NC_002947.3 similar to GP:7741879; identified by sequence similarity; ISPpu10, transposase 612067 1044302 PP_0526 Pseudomonas putida KT2440 ISPpu10, transposase NP_742689.1 611102 D 160488 CDS NP_742690.2 161378143 1044303 complement(612284..614179) 1 NC_002947.3 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 614179 dxs 1044303 dxs Pseudomonas putida KT2440 1-deoxy-D-xylulose-5-phosphate synthase NP_742690.2 612284 R 160488 CDS NP_742691.1 26987266 1044304 complement(614357..615244) 1 NC_002947.3 similar to GB:M92934, GB:X78947, GB:S56201, SP:P29279, PID:1514570, PID:180924, PID:474934, and PID:984956; identified by sequence similarity; polyprenyl synthetase 615244 ispA 1044304 ispA Pseudomonas putida KT2440 polyprenyl synthetase NP_742691.1 614357 R 160488 CDS NP_742692.1 26987267 1044305 complement(615241..615483) 1 NC_002947.3 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 615483 xseB 1044305 xseB Pseudomonas putida KT2440 exodeoxyribonuclease VII small subunit NP_742692.1 615241 R 160488 CDS NP_742693.1 26987268 1044306 complement(615649..616299) 1 NC_002947.3 DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 616299 ribB 1044306 ribB Pseudomonas putida KT2440 3,4-dihydroxy-2-butanone 4-phosphate synthase NP_742693.1 615649 R 160488 CDS NP_742694.1 26987269 1044307 616548..617651 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00073; hypothetical protein 617651 1044307 PP_0531 Pseudomonas putida KT2440 hypothetical protein NP_742694.1 616548 D 160488 CDS NP_742695.1 26987270 1044308 complement(617673..618566) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00326; esterase 618566 1044308 PP_0532 Pseudomonas putida KT2440 esterase NP_742695.1 617673 R 160488 CDS NP_742696.1 26987271 1044309 complement(618667..619995) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00672; sensor protein PfeS 619995 pfeS 1044309 pfeS Pseudomonas putida KT2440 sensor protein PfeS NP_742696.1 618667 R 160488 CDS NP_742697.1 26987272 1044311 complement(619995..620687) 1 NC_002947.3 similar to GB:X64838, SP:P30622, PID:35999, GB:X64838, SP:P30622, and PID:35999; identified by sequence similarity; winged helix family two component transcriptional regulator 620687 1044311 PP_0534 Pseudomonas putida KT2440 winged helix family two component transcriptional regulator NP_742697.1 619995 R 160488 CDS NP_742698.1 26987273 1044312 620869..623046 1 NC_002947.3 similar to GB:M29874, GB:M29873, SP:P20813, and PID:181294; identified by sequence similarity; TonB-dependent siderophore receptor 623046 1044312 PP_0535 Pseudomonas putida KT2440 TonB-dependent siderophore receptor NP_742698.1 620869 D 160488 CDS NP_742699.1 26987274 1044315 complement(623208..623678) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03794; hypothetical protein 623678 1044315 PP_0536 Pseudomonas putida KT2440 hypothetical protein NP_742699.1 623208 R 160488 CDS NP_742700.1 26987275 1044316 complement(624203..625039) 1 NC_002947.3 similar to GB:M59081, SP:P30144, PID:141992, GB:M59081, SP:P30144, and PID:141992; identified by sequence similarity; transcriptional regulator 625039 1044316 PP_0537 Pseudomonas putida KT2440 transcriptional regulator NP_742700.1 624203 R 160488 CDS NP_742701.1 26987276 1044317 complement(625087..625614) 1 NC_002947.3 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 625614 ppa 1044317 ppa Pseudomonas putida KT2440 inorganic pyrophosphatase NP_742701.1 625087 R 160488 CDS NP_742702.1 26987277 1044319 complement(625707..626522) 1 NC_002947.3 hypothetical protein 626522 1044319 PP_0539 Pseudomonas putida KT2440 hypothetical protein NP_742702.1 625707 R 160488 CDS NP_742703.1 26987278 1044320 complement(626543..627190) 1 NC_002947.3 similar to GP:9950224; identified by sequence similarity; hypothetical protein 627190 1044320 PP_0540 Pseudomonas putida KT2440 hypothetical protein NP_742703.1 626543 R 160488 CDS NP_742704.1 26987279 1044321 complement(627408..627866) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01575; acetyltransferase 627866 1044321 PP_0541 Pseudomonas putida KT2440 acetyltransferase NP_742704.1 627408 R 160488 CDS NP_742705.1 26987280 1044324 complement(627974..628792) 1 NC_002947.3 catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 628792 1044324 PP_0542 Pseudomonas putida KT2440 ethanolamine ammonia-lyase small subunit NP_742705.1 627974 R 160488 CDS NP_742706.1 26987281 1044325 complement(628801..630195) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03475; ethanolamine ammonia lyase large subunit 630195 eutB 1044325 eutB Pseudomonas putida KT2440 ethanolamine ammonia lyase large subunit NP_742706.1 628801 R 160488 CDS NP_742707.1 26987282 1044326 complement(630242..631690) 1 NC_002947.3 similar to GP:9950217, GB:Z15005, SP:Q02224, and PID:29865; identified by sequence similarity; ethanolamine transporter 631690 1044326 PP_0544 Pseudomonas putida KT2440 ethanolamine transporter NP_742707.1 630242 R 160488 CDS NP_742708.1 26987283 1044329 complement(631918..633438) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01722; aldehyde dehydrogenase 633438 1044329 PP_0545 Pseudomonas putida KT2440 aldehyde dehydrogenase NP_742708.1 631918 R 160488 CDS NP_742709.1 26987284 1044330 633531..635708 1 NC_002947.3 similar to GP:9950215; identified by sequence similarity; Fis family transcriptional regulator 635708 1044330 PP_0546 Pseudomonas putida KT2440 Fis family transcriptional regulator NP_742709.1 633531 D 160488 CDS NP_742710.1 26987285 1044331 635775..637124 1 NC_002947.3 identified by match to PFAM protein family HMM PF01225; UDP-N-acetylmuramate 637124 mpl 1044331 mpl Pseudomonas putida KT2440 UDP-N-acetylmuramate NP_742710.1 635775 D 160488 CDS NP_742711.1 26987286 1044332 637121..637750 1 NC_002947.3 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; aromatic acid decarboxylase 637750 ubiD 1044332 ubiD Pseudomonas putida KT2440 aromatic acid decarboxylase NP_742711.1 637121 D 160488 CDS NP_742712.1 26987287 1044333 637747..638034 1 NC_002947.3 similar to GP:9950211; identified by sequence similarity; hypothetical protein 638034 1044333 PP_0549 Pseudomonas putida KT2440 hypothetical protein NP_742712.1 637747 D 160488 CDS NP_742713.1 26987288 1044334 complement(638142..638786) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01118; hypothetical protein 638786 1044334 PP_0550 Pseudomonas putida KT2440 hypothetical protein NP_742713.1 638142 R 160488 CDS NP_742714.1 26987289 1044335 complement(638814..640742) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02493; MORN domain-containing protein 640742 1044335 PP_0551 Pseudomonas putida KT2440 MORN domain-containing protein NP_742714.1 638814 R 160488 CDS NP_742715.1 26987290 1044336 complement(640761..641849) 1 NC_002947.3 similar to GB:M10058, SP:P07306, PID:179079, GB:M10058, SP:P07306, and PID:179079; identified by sequence similarity; 2,3-butanediol dehydrogenase 641849 adh 1044336 adh Pseudomonas putida KT2440 2,3-butanediol dehydrogenase NP_742715.1 640761 R 160488 CDS NP_742716.1 26987291 1044339 complement(641878..642984) 1 NC_002947.3 Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; branched-chain alpha-keto acid dehydrogenase subunit E2 642984 acoC 1044339 acoC Pseudomonas putida KT2440 branched-chain alpha-keto acid dehydrogenase subunit E2 NP_742716.1 641878 R 160488 CDS NP_742717.1 26987292 1044340 complement(642981..644003) 1 NC_002947.3 similar to GB:M30448, SP:P13862, PID:181155, PID:29965, PID:29967, PID:29969, GB:M30448, SP:P13862, PID:181155, PID:29965, PID:29967, and PID:29969; identified by sequence similarity; acetoin dehydrogenase subunit beta 644003 acoB 1044340 acoB Pseudomonas putida KT2440 acetoin dehydrogenase subunit beta NP_742717.1 642981 R 160488 CDS NP_742718.1 26987293 1044342 complement(644037..645014) 1 NC_002947.3 similar to GB:Z19585, SP:P35443, PID:311626, GB:Z19585, SP:P35443, and PID:311626; identified by sequence similarity; pyruvate dehydrogenase 645014 acoA 1044342 acoA Pseudomonas putida KT2440 pyruvate dehydrogenase NP_742718.1 644037 R 160488 CDS NP_742719.1 26987294 1044343 complement(645037..646092) 1 NC_002947.3 similar to GB:M57763, SP:P26438, PID:178989, GB:M57763, SP:P26438, and PID:178989; identified by sequence similarity; ATP-NAD/AcoX kinase 646092 1044343 PP_0556 Pseudomonas putida KT2440 ATP-NAD/AcoX kinase NP_742719.1 645037 R 160488 CDS NP_742720.1 26987295 1044344 646376..648229 1 NC_002947.3 similar to GP:3688510, GB:S46950, SP:P29274, GB:U20231, PID:1117998, PID:177892, and PID:400452; identified by sequence similarity; Fis family transcriptional regulator 648229 acoR 1044344 acoR Pseudomonas putida KT2440 Fis family transcriptional regulator NP_742720.1 646376 D 160488 CDS NP_742721.1 26987296 1044345 complement(648320..649675) 1 NC_002947.3 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 649675 accC-1 1044345 accC-1 Pseudomonas putida KT2440 acetyl-CoA carboxylase biotin carboxylase subunit NP_742721.1 648320 R 160488 CDS NP_742722.1 26987297 1044346 complement(649693..650154) 1 NC_002947.3 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 650154 accB 1044346 accB Pseudomonas putida KT2440 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit NP_742722.1 649693 R 160488 CDS NP_742723.1 26987298 1044348 complement(650254..650709) 1 NC_002947.3 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 650709 aroQ-1 1044348 aroQ-1 Pseudomonas putida KT2440 3-dehydroquinate dehydratase NP_742723.1 650254 R 160488 CDS NP_742724.1 26987299 1044350 complement(650889..652661) 1 NC_002947.3 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein 652661 dipZ 1044350 dipZ Pseudomonas putida KT2440 thiol:disulfide interchange protein NP_742724.1 650889 R 160488 CDS NP_742725.1 26987300 1044351 complement(652779..654740) 1 NC_002947.3 similar to GP:8307682; identified by sequence similarity; methyl-accepting chemotaxis sensory transducer 654740 ctpL 1044351 ctpL Pseudomonas putida KT2440 methyl-accepting chemotaxis sensory transducer NP_742725.1 652779 R 160488 CDS NP_742726.1 26987301 1044352 complement(654985..656340) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00990; response regulator receiver modulated diguanylate cyclase 656340 1044352 PP_0563 Pseudomonas putida KT2440 response regulator receiver modulated diguanylate cyclase NP_742726.1 654985 R 160488 CDS NP_742727.1 26987302 1044353 656567..657655 1 NC_002947.3 hypothetical protein 657655 1044353 PP_0564 Pseudomonas putida KT2440 hypothetical protein NP_742727.1 656567 D 160488 CDS NP_742728.1 26987303 1044354 657658..658191 1 NC_002947.3 similar to SP:Q9X7Q6; identified by sequence similarity; NUDIX hydrolase 658191 1044354 PP_0565 Pseudomonas putida KT2440 NUDIX hydrolase NP_742728.1 657658 D 160488 CDS NP_742729.1 26987304 1044356 658431..658802 1 NC_002947.3 involved in start site selection during the initiation of translation; translation initiation factor Sui1 658802 1044356 PP_0566 Pseudomonas putida KT2440 translation initiation factor Sui1 NP_742729.1 658431 D 160488 CDS NP_742730.1 26987305 1044357 658953..660866 1 NC_002947.3 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 660866 speA 1044357 speA Pseudomonas putida KT2440 arginine decarboxylase NP_742730.1 658953 D 160488 CDS NP_742731.1 26987306 1044358 661033..661488 1 NC_002947.3 hypothetical protein 661488 1044358 PP_0568 Pseudomonas putida KT2440 hypothetical protein NP_742731.1 661033 D 160488 CDS NP_742732.1 26987307 1044359 complement(661615..662952) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04235; MATE efflux family protein 662952 1044359 PP_0569 Pseudomonas putida KT2440 MATE efflux family protein NP_742732.1 661615 R 160488 CDS NP_742733.1 26987308 1044360 663133..668034 1 NC_002947.3 similar to SP:P10345, PID:41572, GB:U00096, PID:1651370, PID:1787030, SP:P10345, PID:41572, GB:U00096, PID:1651370, and PID:1787030; identified by sequence similarity; alpha-2-macroglobulin 668034 1044360 PP_0570 Pseudomonas putida KT2440 alpha-2-macroglobulin NP_742733.1 663133 D 160488 CDS NP_742734.1 26987309 1044361 complement(668186..668521) 1 NC_002947.3 similar to GP:9946353, and GP:9946353; identified by sequence similarity; hypothetical protein 668521 1044361 PP_0571 Pseudomonas putida KT2440 hypothetical protein NP_742734.1 668186 R 160488 CDS NP_742735.1 26987310 1044365 668557..670911 1 NC_002947.3 penicillin-insensitive transglycosylase/transpeptidase; penicillin-binding protein 1C 670911 pbpC 1044365 pbpC Pseudomonas putida KT2440 penicillin-binding protein 1C NP_742735.1 668557 D 160488 CDS NP_742736.1 26987311 1044368 670944..672668 1 NC_002947.3 hypothetical protein 672668 1044368 PP_0573 Pseudomonas putida KT2440 hypothetical protein NP_742736.1 670944 D 160488 CDS NP_742737.1 26987312 1044369 complement(672741..673517) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00072; LuxR family transcriptional regulator 673517 1044369 PP_0574 Pseudomonas putida KT2440 LuxR family transcriptional regulator NP_742737.1 672741 R 160488 CDS NP_742738.1 26987313 1044371 complement(673636..674106) 1 NC_002947.3 hypothetical protein 674106 1044371 PP_0575 Pseudomonas putida KT2440 hypothetical protein NP_742738.1 673636 R 160488 CDS NP_742739.1 26987314 1044372 complement(674412..674981) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01690; lipoprotein 674981 1044372 PP_0576 Pseudomonas putida KT2440 lipoprotein NP_742739.1 674412 R 160488 CDS NP_742740.1 26987315 1044373 complement(675001..675696) 1 NC_002947.3 hypothetical protein 675696 1044373 PP_0577 Pseudomonas putida KT2440 hypothetical protein NP_742740.1 675001 R 160488 CDS NP_742741.1 26987316 1044375 complement(675659..676408) 1 NC_002947.3 methyltransferase 676408 1044375 PP_0578 Pseudomonas putida KT2440 methyltransferase NP_742741.1 675659 R 160488 CDS NP_742742.1 26987317 1044378 complement(676405..676803) 1 NC_002947.3 hypothetical protein 676803 1044378 PP_0579 Pseudomonas putida KT2440 hypothetical protein NP_742742.1 676405 R 160488 CDS NP_742743.1 26987318 1044380 complement(676788..677639) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01575; acyl dehydratase MaoC 677639 1044380 PP_0580 Pseudomonas putida KT2440 acyl dehydratase MaoC NP_742743.1 676788 R 160488 CDS NP_742744.1 26987319 1044381 complement(677642..679015) 1 NC_002947.3 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 679015 fabG 1044381 fabG Pseudomonas putida KT2440 3-ketoacyl-ACP reductase NP_742744.1 677642 R 160488 CDS NP_742745.1 26987320 1044385 679112..680389 1 NC_002947.3 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 680389 1044385 PP_0582 Pseudomonas putida KT2440 acetyl-CoA acetyltransferase NP_742745.1 679112 D 160488 CDS NP_742746.1 26987321 1044391 680479..681258 1 NC_002947.3 similar to GP:9945995; identified by sequence similarity; AraC family transcriptional regulator 681258 1044391 PP_0583 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_742746.1 680479 D 160488 CDS NP_742747.1 26987322 1044392 complement(681327..683270) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00672; methyl-accepting chemotaxis transducer 683270 1044392 PP_0584 Pseudomonas putida KT2440 methyl-accepting chemotaxis transducer NP_742747.1 681327 R 160488 CDS NP_742748.1 26987323 1044395 complement(683438..683848) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00376; MerR family transcriptional regulator 683848 1044395 PP_0585 Pseudomonas putida KT2440 MerR family transcriptional regulator NP_742748.1 683438 R 160488 CDS NP_742749.1 26987324 1044396 complement(683845..686244) 1 NC_002947.3 similar to GP:9950104; identified by sequence similarity; heavy metal translocating P-type ATPase 686244 1044396 PP_0586 Pseudomonas putida KT2440 heavy metal translocating P-type ATPase NP_742749.1 683845 R 160488 CDS NP_742750.1 26987325 1044398 complement(686297..686683) 1 NC_002947.3 similar to GP:9949730; identified by sequence similarity; hypothetical protein 686683 1044398 PP_0587 Pseudomonas putida KT2440 hypothetical protein NP_742750.1 686297 R 160488 CDS NP_742751.1 26987326 1044399 686829..687026 1 NC_002947.3 identified by match to PFAM protein family HMM PF00403; heavy metal transport/detoxification protein 687026 1044399 PP_0588 Pseudomonas putida KT2440 heavy metal transport/detoxification protein NP_742751.1 686829 D 160488 CDS NP_742752.1 26987327 1044400 687134..688315 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00880; Bcr/CflA family multidrug resistance transporter 688315 1044400 PP_0589 Pseudomonas putida KT2440 Bcr/CflA family multidrug resistance transporter NP_742752.1 687134 D 160488 CDS NP_742753.1 26987328 1044401 688953..689666 1 NC_002947.3 identified by match to PFAM protein family HMM PF01022; ArsR family transcriptional regulator 689666 1044401 PP_0590 Pseudomonas putida KT2440 ArsR family transcriptional regulator NP_742753.1 688953 D 160488 CDS NP_742754.1 26987329 1044402 complement(689687..690634) 1 NC_002947.3 catalyzes the formation of inosine from adenosine; adenosine deaminase 690634 add 1044402 add Pseudomonas putida KT2440 adenosine deaminase NP_742754.1 689687 R 160488 CDS NP_742755.1 26987330 1044403 complement(690720..691406) 1 NC_002947.3 similar to GP:15140986; identified by sequence similarity; short chain dehydrogenase 691406 1044403 PP_0592 Pseudomonas putida KT2440 short chain dehydrogenase NP_742755.1 690720 R 160488 CDS NP_742756.1 26987331 1044404 complement(691775..692359) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00257; hypothetical protein 692359 1044404 PP_0593 Pseudomonas putida KT2440 hypothetical protein NP_742756.1 691775 R 160488 CDS NP_742757.1 26987332 1044405 complement(692369..693112) 1 NC_002947.3 similar to GP:9945999; identified by sequence similarity; TetR family transcriptional regulator 693112 1044405 PP_0594 Pseudomonas putida KT2440 TetR family transcriptional regulator NP_742757.1 692369 R 160488 CDS NP_742758.1 26987333 1044406 complement(693122..694039) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 694039 1044406 PP_0595 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_742758.1 693122 R 160488 CDS NP_742759.1 26987334 1044407 694158..695504 1 NC_002947.3 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 695504 1044407 PP_0596 Pseudomonas putida KT2440 beta alanine--pyruvate transaminase NP_742759.1 694158 D 160488 CDS NP_742760.1 26987335 1044408 695578..697071 1 NC_002947.3 similar to SP:P28810; identified by sequence similarity; methylmalonate-semialdehyde dehydrogenase 697071 mmsA-1 1044408 mmsA-1 Pseudomonas putida KT2440 methylmalonate-semialdehyde dehydrogenase NP_742760.1 695578 D 160488 CDS NP_742761.1 26987336 1044413 704522..706822 1 NC_002947.3 similar to SP:P76272; identified by sequence similarity; hypothetical protein 706822 1044413 PP_0599 Pseudomonas putida KT2440 hypothetical protein NP_742761.1 704522 D 160488 CDS NP_742762.1 26987337 1044414 complement(707068..707346) 1 NC_002947.3 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 707346 rpsT 1044414 rpsT Pseudomonas putida KT2440 30S ribosomal protein S20 NP_742762.1 707068 R 160488 CDS NP_742763.1 26987338 1044415 707597..709135 1 NC_002947.3 identified by match to PFAM protein family HMM PF03023; MviN family membrane protein 709135 1044415 PP_0601 Pseudomonas putida KT2440 MviN family membrane protein NP_742763.1 707597 D 160488 CDS NP_742764.1 26987339 1044416 709254..710204 1 NC_002947.3 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 710204 ribF 1044416 ribF Pseudomonas putida KT2440 bifunctional riboflavin kinase/FMN adenylyltransferase NP_742764.1 709254 D 160488 CDS NP_742765.1 26987340 1044417 710201..713032 1 NC_002947.3 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 713032 ileS 1044417 ileS Pseudomonas putida KT2440 isoleucyl-tRNA synthetase NP_742765.1 710201 D 160488 CDS NP_742766.1 26987341 1044418 713010..713540 1 NC_002947.3 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 713540 lspA 1044418 lspA Pseudomonas putida KT2440 lipoprotein signal peptidase NP_742766.1 713010 D 160488 CDS NP_742767.1 26987342 1044419 713533..713970 1 NC_002947.3 similar to SP:P22563, GB:L08666, SP:P45880, PID:190200, and PID:190201; identified by sequence similarity; FKBP-type peptidylprolyl isomerase 713970 fkpB 1044419 fkpB Pseudomonas putida KT2440 FKBP-type peptidylprolyl isomerase NP_742767.1 713533 D 160488 CDS NP_742768.1 26987343 1044422 713985..714932 1 NC_002947.3 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 714932 ispH 1044422 ispH Pseudomonas putida KT2440 4-hydroxy-3-methylbut-2-enyl diphosphate reductase NP_742768.1 713985 D 160488 CDS NP_742769.1 26987344 1044423 complement(715009..715491) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01708; type IV pili biogenesis protein FimT 715491 1044423 PP_0607 Pseudomonas putida KT2440 type IV pili biogenesis protein FimT NP_742769.1 715009 R 160488 CDS NP_742770.1 26987345 1044424 715637..715783 1 NC_002947.3 hypothetical protein 715783 1044424 PP_0608 Pseudomonas putida KT2440 hypothetical protein NP_742770.1 715637 D 160488 CDS NP_742771.1 26987346 1044426 715780..716424 1 NC_002947.3 hypothetical protein 716424 1044426 PP_0609 Pseudomonas putida KT2440 hypothetical protein NP_742771.1 715780 D 160488 CDS NP_742772.1 26987347 1044427 716421..716885 1 NC_002947.3 hypothetical protein 716885 1044427 PP_0610 Pseudomonas putida KT2440 hypothetical protein NP_742772.1 716421 D 160488 CDS NP_742773.1 26987348 1044428 716887..717276 1 NC_002947.3 identified by match to PFAM protein family HMM PF00114; type IV pili biogenesis protein PilE 717276 pilE 1044428 pilE Pseudomonas putida KT2440 type IV pili biogenesis protein PilE NP_742773.1 716887 D 160488 CDS NP_742774.1 26987349 1044429 717331..718428 1 NC_002947.3 similar to GP:9950792; identified by sequence similarity; FAD dependent oxidoreductase 718428 1044429 PP_0612 Pseudomonas putida KT2440 FAD dependent oxidoreductase NP_742774.1 717331 D 160488 CDS NP_742775.1 26987350 1044430 complement(718505..719914) 1 NC_002947.3 similar to GP:10567370; identified by sequence similarity; amidase 719914 1044430 PP_0613 Pseudomonas putida KT2440 amidase NP_742775.1 718505 R 160488 CDS NP_742776.1 26987351 1044431 complement(719916..721193) 1 NC_002947.3 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 721193 1044431 PP_0614 Pseudomonas putida KT2440 allantoate amidohydrolase NP_742776.1 719916 R 160488 CDS NP_742777.1 26987352 1044432 complement(721300..721995) 1 NC_002947.3 similar to GP:3644003, GB:J03910, GB:S68954, SP:P02795, SP:P04731, SP:P04732, SP:P04733, SP:P07438, SP:P13640, SP:P25713, SP:P80294, SP:P80295, SP:P80296, PID:188713, PID:517349, and PID:914851; identified by sequence similarity; branched chain amino acid ABC transporter ATP-binding protein 721995 1044432 PP_0615 Pseudomonas putida KT2440 branched chain amino acid ABC transporter ATP-binding protein NP_742777.1 721300 R 160488 CDS NP_742778.1 26987353 1044433 complement(721995..722747) 1 NC_002947.3 similar to GB:M93015, SP:P29916, and PID:150623; identified by sequence similarity; branched chain amino acid ABC transporter ATP-binding protein 722747 1044433 PP_0616 Pseudomonas putida KT2440 branched chain amino acid ABC transporter ATP-binding protein NP_742778.1 721995 R 160488 CDS NP_742779.1 26987354 1044434 complement(722747..723766) 1 NC_002947.3 similar to GB:M93015, SP:P29916, and PID:150623; identified by sequence similarity; inner-membrane translocator 723766 1044434 PP_0617 Pseudomonas putida KT2440 inner-membrane translocator NP_742779.1 722747 R 160488 CDS NP_742780.1 26987355 1044435 complement(723768..724628) 1 NC_002947.3 similar to GB:M93015, SP:P29916, and PID:150623; identified by sequence similarity; inner-membrane translocator 724628 1044435 PP_0618 Pseudomonas putida KT2440 inner-membrane translocator NP_742780.1 723768 R 160488 CDS NP_742781.1 26987356 1044436 complement(724694..725896) 1 NC_002947.3 similar to SP:P21175, GB:U10860, SP:P49915, and PID:595410; identified by sequence similarity; branched-chain amino acid ABC transporter substrate-binding protein 725896 1044436 PP_0619 Pseudomonas putida KT2440 branched-chain amino acid ABC transporter substrate-binding protein NP_742781.1 724694 R 160488 CDS NP_742782.1 26987357 1044437 complement(725987..726751) 1 NC_002947.3 similar to GB:M74011, SP:Q01244, PID:155552, GB:M74011, SP:Q01244, and PID:155552; identified by sequence similarity; GntR family transcriptional regulator 726751 1044437 PP_0620 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_742782.1 725987 R 160488 CDS NP_742783.1 26987358 1044438 complement(727018..727329) 1 NC_002947.3 similar to GP:5924036; identified by sequence similarity; hypothetical protein 727329 1044438 PP_0621 Pseudomonas putida KT2440 hypothetical protein NP_742783.1 727018 R 160488 CDS NP_742784.1 26987359 1044439 complement(727343..728362) 1 NC_002947.3 similar to GB:X77722, PID:1147572, PID:488364, PID:994725, PID:994726, PID:995295, and PID:995297; identified by sequence similarity; competence lipoprotein ComL 728362 1044439 PP_0622 Pseudomonas putida KT2440 competence lipoprotein ComL NP_742784.1 727343 R 160488 CDS NP_742785.1 26987360 1044443 729469..730209 1 NC_002947.3 identified by match to PFAM protein family HMM PF02578; hypothetical protein 730209 1044443 PP_0624 Pseudomonas putida KT2440 hypothetical protein NP_742785.1 729469 D 160488 CDS NP_742786.1 26987361 1044444 730459..733023 1 NC_002947.3 identified by match to PFAM protein family HMM PF02861; ATP-dependent Clp protease, ATP-binding subunit ClpB 733023 clpB 1044444 clpB Pseudomonas putida KT2440 ATP-dependent Clp protease, ATP-binding subunit ClpB NP_742786.1 730459 D 160488 CDS NP_742787.1 26987362 1044445 complement(734019..735314) 1 NC_002947.3 similar to GP:9664855, and SP:P00393; identified by sequence similarity; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 735314 ndh 1044445 ndh Pseudomonas putida KT2440 FAD-dependent pyridine nucleotide-disulfide oxidoreductase NP_742787.1 734019 R 160488 CDS NP_742788.1 26987363 1044446 complement(735399..735572) 1 NC_002947.3 hypothetical protein 735572 1044446 PP_0627 Pseudomonas putida KT2440 hypothetical protein NP_742788.1 735399 R 160488 CDS NP_742789.1 26987364 1044447 complement(735705..736334) 1 NC_002947.3 hypothetical protein 736334 1044447 PP_0628 Pseudomonas putida KT2440 hypothetical protein NP_742789.1 735705 R 160488 CDS NP_742790.1 26987365 1044448 736827..737615 1 NC_002947.3 hypothetical protein 737615 1044448 PP_0629 Pseudomonas putida KT2440 hypothetical protein NP_742790.1 736827 D 160488 CDS NP_742791.1 26987366 1044449 complement(737727..737927) 1 NC_002947.3 similar to GP:3169572, and GP:9950773; identified by sequence similarity; zinc-binding protein 737927 1044449 PP_0630 Pseudomonas putida KT2440 zinc-binding protein NP_742791.1 737727 R 160488 CDS NP_742792.1 26987367 1044450 complement(737924..738547) 1 NC_002947.3 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 738547 coaE 1044450 coaE Pseudomonas putida KT2440 dephospho-CoA kinase NP_742792.1 737924 R 160488 CDS NP_742793.1 26987368 1044451 complement(738547..739413) 1 NC_002947.3 similar to GB:M18461, GB:S60788, PID:1552514, PID:339016, PID:575274, PID:930052, GB:M18461, GB:S60788, PID:1552514, PID:339016, PID:575274, and PID:930052; identified by sequence similarity; prepilin peptidase 739413 pilD 1044451 pilD Pseudomonas putida KT2440 prepilin peptidase NP_742793.1 738547 R 160488 CDS NP_742794.1 26987369 1044452 complement(739416..740624) 1 NC_002947.3 similar to GB:L06139, SP:Q02763, PID:292824, GB:L06139, SP:Q02763, and PID:292824; identified by sequence similarity; type IV pili biogenesis protein PilC 740624 pilC 1044452 pilC Pseudomonas putida KT2440 type IV pili biogenesis protein PilC NP_742794.1 739416 R 160488 CDS NP_742795.1 26987370 1044453 740841..741251 1 NC_002947.3 similar to GB:M34046, GB:M61886, GB:J04129, SP:P09466, GB:M34046, GB:M61886, GB:J04129, and SP:P09466; identified by sequence similarity; fimbrial protein pilin 741251 pilA 1044453 pilA Pseudomonas putida KT2440 fimbrial protein pilin NP_742795.1 740841 D 160488 CDS NP_742796.1 26987371 1044454 741898..743319 1 NC_002947.3 similar to GP:4323583, GB:L01112, SP:P45375, PID:145016, and PID:1247706; identified by sequence similarity; group II intron-encoding maturase 743319 1044454 PP_0635 Pseudomonas putida KT2440 group II intron-encoding maturase NP_742796.1 741898 D 160488 CDS NP_742797.1 26987372 1044455 complement(743593..744333) 1 NC_002947.3 similar to SP:Q48770; identified by sequence similarity; cold shock DNA-binding domain-containing protein 744333 1044455 PP_0636 Pseudomonas putida KT2440 cold shock DNA-binding domain-containing protein NP_742797.1 743593 R 160488 CDS NP_742798.1 26987373 1044457 complement(744964..746496) 1 NC_002947.3 similar to GP:11641376; identified by sequence similarity; ISPpu15, transposase Orf2 746496 1044457 PP_0637 Pseudomonas putida KT2440 ISPpu15, transposase Orf2 NP_742798.1 744964 R 160488 CDS NP_742799.1 26987374 1044458 complement(746515..746871) 1 NC_002947.3 similar to GP:8037784; identified by sequence similarity; ISPpu15, transposase Orf1 746871 1044458 PP_0638 Pseudomonas putida KT2440 ISPpu15, transposase Orf1 NP_742799.1 746515 R 160488 CDS NP_742800.1 26987375 1044459 complement(748964..749680) 1 NC_002947.3 hypothetical protein 749680 1044459 PP_0639 Pseudomonas putida KT2440 hypothetical protein NP_742800.1 748964 R 160488 CDS NP_742801.1 26987376 1044460 complement(749677..750861) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00005; hypothetical protein 750861 1044460 PP_0640 Pseudomonas putida KT2440 hypothetical protein NP_742801.1 749677 R 160488 CDS NP_742802.1 26987377 1044461 complement(752454..752759) 1 NC_002947.3 hypothetical protein 752759 1044461 PP_0641 Pseudomonas putida KT2440 hypothetical protein NP_742802.1 752454 R 160488 CDS NP_742803.1 26987378 1044463 753914..754528 1 NC_002947.3 identified by match to PFAM protein family HMM PF02588; hypothetical protein 754528 1044463 PP_0642 Pseudomonas putida KT2440 hypothetical protein NP_742803.1 753914 D 160488 CDS NP_742804.1 26987379 1044464 complement(754560..754742) 1 NC_002947.3 hypothetical protein 754742 1044464 PP_0643 Pseudomonas putida KT2440 hypothetical protein NP_742804.1 754560 R 160488 CDS NP_742805.1 26987380 1044465 complement(754735..754854) 1 NC_002947.3 hypothetical protein 754854 1044465 PP_0644 Pseudomonas putida KT2440 hypothetical protein NP_742805.1 754735 R 160488 CDS NP_742806.1 26987381 1044466 complement(754910..755191) 1 NC_002947.3 hypothetical protein 755191 1044466 PP_0645 Pseudomonas putida KT2440 hypothetical protein NP_742806.1 754910 R 160488 CDS NP_742807.1 26987382 1044467 755403..756803 1 NC_002947.3 hypothetical protein 756803 1044467 PP_0646 Pseudomonas putida KT2440 hypothetical protein NP_742807.1 755403 D 160488 CDS NP_742808.1 26987383 1044468 756796..757185 1 NC_002947.3 hypothetical protein 757185 1044468 PP_0647 Pseudomonas putida KT2440 hypothetical protein NP_742808.1 756796 D 160488 CDS NP_742809.1 26987384 1044469 757377..757832 1 NC_002947.3 similar to GP:15075854; identified by sequence similarity; hypothetical protein 757832 1044469 PP_0648 Pseudomonas putida KT2440 hypothetical protein NP_742809.1 757377 D 160488 CDS NP_742810.1 26987385 1044470 757920..758330 1 NC_002947.3 identified by match to PFAM protein family HMM PF00293; MutT/nudix family protein 758330 1044470 PP_0649 Pseudomonas putida KT2440 MutT/nudix family protein NP_742810.1 757920 D 160488 CDS NP_742811.1 26987386 1044471 complement(758358..758468) 1 NC_002947.3 similar to GP:14270229; identified by sequence similarity; hypothetical protein 758468 1044471 PP_0650 Pseudomonas putida KT2440 hypothetical protein NP_742811.1 758358 R 160488 CDS NP_742812.1 26987387 1044473 758577..759026 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01575; acetyltransferase 759026 1044473 PP_0651 Pseudomonas putida KT2440 acetyltransferase NP_742812.1 758577 D 160488 CDS NP_742813.1 26987388 1044474 complement(760152..761537) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03600; gluconate transporter 761537 1044474 PP_0652 Pseudomonas putida KT2440 gluconate transporter NP_742813.1 760152 R 160488 CDS NP_742814.1 26987389 1044475 complement(761534..761815) 1 NC_002947.3 hypothetical protein 761815 1044475 PP_0653 Pseudomonas putida KT2440 hypothetical protein NP_742814.1 761534 R 160488 CDS NP_742815.1 26987390 1044477 762063..762899 1 NC_002947.3 Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase 762899 mdh 1044477 mdh Pseudomonas putida KT2440 malate dehydrogenase NP_742815.1 762063 D 160488 CDS NP_742816.1 26987391 1044478 762953..763279 1 NC_002947.3 similar to GP:2708665; identified by sequence similarity; fimbrial protein-like protein 763279 1044478 PP_0655 Pseudomonas putida KT2440 fimbrial protein-like protein NP_742816.1 762953 D 160488 CDS NP_742817.1 26987392 1044480 complement(763697..764518) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01726; polar amino acid ABC transporter inner membrane subunit 764518 1044480 PP_0656 Pseudomonas putida KT2440 polar amino acid ABC transporter inner membrane subunit NP_742817.1 763697 R 160488 CDS NP_742818.1 26987393 1044481 complement(764515..765342) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00497; amino acid ABC transporter substrate-binding protein 765342 1044481 PP_0657 Pseudomonas putida KT2440 amino acid ABC transporter substrate-binding protein NP_742818.1 764515 R 160488 CDS NP_742819.1 26987394 1044482 765404..766339 1 NC_002947.3 similar to GB:U02081, and PID:548082; identified by sequence similarity; homocysteine S-methyltransferase 766339 1044482 PP_0658 Pseudomonas putida KT2440 homocysteine S-methyltransferase NP_742819.1 765404 D 160488 CDS NP_742820.1 26987395 1044483 766507..767778 1 NC_002947.3 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 767778 metB 1044483 metB Pseudomonas putida KT2440 cystathionine gamma-synthase NP_742820.1 766507 D 160488 CDS NP_742821.1 26987396 1044484 767921..769360 1 NC_002947.3 similar to SP:P13971, GB:X05813, and PID:42644; identified by sequence similarity; amino acid transporter 769360 1044484 PP_0660 Pseudomonas putida KT2440 amino acid transporter NP_742821.1 767921 D 160488 CDS NP_742822.1 26987397 1044485 769406..770290 1 NC_002947.3 similar to SP:P24734; identified by sequence similarity; transcriptional regulator AmpR 770290 1044485 PP_0661 Pseudomonas putida KT2440 transcriptional regulator AmpR NP_742822.1 769406 D 160488 CDS NP_742823.1 26987398 1044486 770315..771703 1 NC_002947.3 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 771703 1044486 PP_0662 Pseudomonas putida KT2440 threonine synthase NP_742823.1 770315 D 160488 CDS NP_742824.1 26987399 1044487 771700..772137 1 NC_002947.3 similar to GP:6224605; identified by sequence similarity; AsnC family transcriptional regulator 772137 1044487 PP_0663 Pseudomonas putida KT2440 AsnC family transcriptional regulator NP_742824.1 771700 D 160488 CDS NP_742825.1 26987400 1044488 772336..773379 1 NC_002947.3 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 773379 1044488 PP_0664 Pseudomonas putida KT2440 homoserine dehydrogenase NP_742825.1 772336 D 160488 CDS NP_742826.1 26987401 1044489 773392..774810 1 NC_002947.3 similar to SP:P32724, GB:X58406, PID:581361, PID:2094830, and GB:AL123456; identified by sequence similarity; NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 774810 1044489 PP_0665 Pseudomonas putida KT2440 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase NP_742826.1 773392 D 160488 CDS NP_742827.1 26987402 1044490 774827..775189 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00004; hypothetical protein 775189 1044490 PP_0666 Pseudomonas putida KT2440 hypothetical protein NP_742827.1 774827 D 160488 CDS NP_742828.1 26987403 1044491 775360..775896 1 NC_002947.3 identified by match to PFAM protein family HMM PF00196; ECF subfamily RNA polymerase sigma factor 775896 1044491 PP_0667 Pseudomonas putida KT2440 ECF subfamily RNA polymerase sigma factor NP_742828.1 775360 D 160488 CDS NP_742829.1 26987404 1044492 775893..776858 1 NC_002947.3 similar to GB:L06139, SP:Q02763, and PID:292824; identified by sequence similarity; transmembrane sensor 776858 1044492 PP_0668 Pseudomonas putida KT2440 transmembrane sensor NP_742829.1 775893 D 160488 CDS NP_742830.1 26987405 1044493 776949..779381 1 NC_002947.3 similar to GB:L01694, SP:Q03113, and PID:182994; identified by sequence similarity; outer membrane ferric siderophore receptor 779381 1044493 PP_0669 Pseudomonas putida KT2440 outer membrane ferric siderophore receptor NP_742830.1 776949 D 160488 CDS NP_742831.1 26987406 1044494 complement(779515..780468) 1 NC_002947.3 similar to SP:P15109, and PID:151431; identified by sequence similarity; bile acid/Na+ symporter family protein 780468 1044494 PP_0670 Pseudomonas putida KT2440 bile acid/Na+ symporter family protein NP_742831.1 779515 R 160488 CDS NP_742832.1 26987407 1044495 complement(780590..781843) 1 NC_002947.3 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 781843 glyA 1044495 glyA Pseudomonas putida KT2440 serine hydroxymethyltransferase NP_742832.1 780590 R 160488 CDS NP_742833.1 26987408 1044496 complement(782093..785923) 1 NC_002947.3 similar to GP:9950851; identified by sequence similarity; sensory box protein 785923 1044496 PP_0672 Pseudomonas putida KT2440 sensory box protein NP_742833.1 782093 R 160488 CDS NP_742834.1 26987409 1044497 786145..786576 1 NC_002947.3 hypothetical protein 786576 1044497 PP_0673 Pseudomonas putida KT2440 hypothetical protein NP_742834.1 786145 D 160488 CDS NP_742835.1 26987410 1044500 786881..788548 1 NC_002947.3 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein 788548 1044500 PP_0674 Pseudomonas putida KT2440 ABC transporter ATP-binding protein NP_742835.1 786881 D 160488 CDS NP_742836.1 26987411 1044501 788761..790110 1 NC_002947.3 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 790110 gdhA 1044501 gdhA Pseudomonas putida KT2440 glutamate dehydrogenase NP_742836.1 788761 D 160488 CDS NP_742837.1 26987412 1044502 complement(790170..790667) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01272; GreA/GreB family elongation factor 790667 1044502 PP_0676 Pseudomonas putida KT2440 GreA/GreB family elongation factor NP_742837.1 790170 R 160488 CDS NP_742838.1 26987413 1044503 complement(790735..791091) 1 NC_002947.3 lipoprotein 791091 1044503 PP_0677 Pseudomonas putida KT2440 lipoprotein NP_742838.1 790735 R 160488 CDS NP_742839.1 26987414 1044504 complement(791193..793055) 1 NC_002947.3 hypothetical protein 793055 1044504 PP_0678 Pseudomonas putida KT2440 hypothetical protein NP_742839.1 791193 R 160488 CDS NP_742840.1 26987415 1044505 complement(793118..793633) 1 NC_002947.3 hypothetical protein 793633 1044505 PP_0679 Pseudomonas putida KT2440 hypothetical protein NP_742840.1 793118 R 160488 CDS NP_742841.1 26987416 1044506 793857..796295 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00764; ATP-dependent protease 796295 1044506 PP_0680 Pseudomonas putida KT2440 ATP-dependent protease NP_742841.1 793857 D 160488 CDS NP_742842.1 26987417 1044507 796458..796796 1 NC_002947.3 hypothetical protein 796796 1044507 PP_0681 Pseudomonas putida KT2440 hypothetical protein NP_742842.1 796458 D 160488 CDS NP_742843.1 26987418 1044508 796986..797474 1 NC_002947.3 identified by match to PFAM protein family HMM PF03350; hypothetical protein 797474 1044508 PP_0682 Pseudomonas putida KT2440 hypothetical protein NP_742843.1 796986 D 160488 CDS NP_742844.1 26987419 1044509 797551..797940 1 NC_002947.3 hypothetical protein 797940 1044509 PP_0683 Pseudomonas putida KT2440 hypothetical protein NP_742844.1 797551 D 160488 CDS NP_742845.1 26987420 1044510 798026..798643 1 NC_002947.3 similar to SP:P39311; identified by sequence similarity; FKBP-type peptidylprolyl isomerase 798643 fklB-1 1044510 fklB-1 Pseudomonas putida KT2440 FKBP-type peptidylprolyl isomerase NP_742845.1 798026 D 160488 CDS NP_742846.1 26987421 1044511 complement(798670..798915) 1 NC_002947.3 hypothetical protein 798915 1044511 PP_0685 Pseudomonas putida KT2440 hypothetical protein NP_742846.1 798670 R 160488 CDS NP_742847.1 26987422 1044512 complement(799000..799341) 1 NC_002947.3 similar to GB:L19182, and PID:307151; identified by sequence similarity; alkylphosphonate utilization protein PhnA 799341 phnA 1044512 phnA Pseudomonas putida KT2440 alkylphosphonate utilization protein PhnA NP_742847.1 799000 R 160488 CDS NP_742848.1 26987423 1044514 complement(799502..800470) 1 NC_002947.3 similar to GP:5712726, GB:L05568, SP:P31645, PID:2149095, PID:291820, and PID:36433; identified by sequence similarity; polyprenyl synthetase 800470 ispB 1044514 ispB Pseudomonas putida KT2440 polyprenyl synthetase NP_742848.1 799502 R 160488 CDS NP_742849.2 161378142 1044516 800715..801029 1 NC_002947.3 similar to GP:5712722, GB:X03072, SP:P04628, and PID:33936; identified by sequence similarity; 50S ribosomal protein L21 801029 rplU 1044516 rplU Pseudomonas putida KT2440 50S ribosomal protein L21 NP_742849.2 800715 D 160488 CDS NP_742850.1 26987425 1044517 801068..801325 1 NC_002947.3 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 801325 rpmA 1044517 rpmA Pseudomonas putida KT2440 50S ribosomal protein L27 NP_742850.1 801068 D 160488 CDS NP_742851.1 26987426 1044518 801514..802740 1 NC_002947.3 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 802740 obgE 1044518 obgE Pseudomonas putida KT2440 GTPase ObgE NP_742851.1 801514 D 160488 CDS NP_742852.1 26987427 1044519 802826..803944 1 NC_002947.3 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 803944 proB 1044519 proB Pseudomonas putida KT2440 gamma-glutamyl kinase NP_742852.1 802826 D 160488 CDS NP_742853.1 26987428 1044520 803941..804402 1 NC_002947.3 similar to GB:J04970, SP:P14384, and PID:179932; identified by sequence similarity; CreA family protein 804402 creA 1044520 creA Pseudomonas putida KT2440 CreA family protein NP_742853.1 803941 D 160488 CDS NP_742854.1 26987429 1044521 complement(804496..807327) 1 NC_002947.3 hypothetical protein 807327 1044521 PP_0693 Pseudomonas putida KT2440 hypothetical protein NP_742854.1 804496 R 160488 CDS NP_742855.1 26987430 1044523 complement(807324..808031) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04288; hypothetical protein 808031 1044523 PP_0694 Pseudomonas putida KT2440 hypothetical protein NP_742855.1 807324 R 160488 CDS NP_742856.1 26987431 1044524 complement(808021..809355) 1 NC_002947.3 hypothetical protein 809355 1044524 PP_0695 Pseudomonas putida KT2440 hypothetical protein NP_742856.1 808021 R 160488 CDS NP_742857.1 26987432 1044525 809432..810307 1 NC_002947.3 hypothetical protein 810307 1044525 PP_0696 Pseudomonas putida KT2440 hypothetical protein NP_742857.1 809432 D 160488 CDS NP_742858.1 26987433 1044526 810304..810759 1 NC_002947.3 identified by match to PFAM protein family HMM PF00583; acetyltransferase 810759 1044526 PP_0697 Pseudomonas putida KT2440 acetyltransferase NP_742858.1 810304 D 160488 CDS NP_742859.1 26987434 1044528 complement(811332..812249) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 812249 1044528 PP_0698 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_742859.1 811332 R 160488 CDS NP_742860.1 26987435 1044529 812477..813091 1 NC_002947.3 identified by match to PFAM protein family HMM PF01810; amino acid transporter LysE 813091 1044529 PP_0699 Pseudomonas putida KT2440 amino acid transporter LysE NP_742860.1 812477 D 160488 CDS NP_742861.1 26987436 1044530 complement(813394..814380) 1 NC_002947.3 FecR anti-FecI sigma factor 814380 1044530 PP_0700 Pseudomonas putida KT2440 FecR anti-FecI sigma factor NP_742861.1 813394 R 160488 CDS NP_742862.1 26987437 1044532 814511..815725 1 NC_002947.3 similar to GB:X64063, SP:P28765, and PID:1335662; identified by sequence similarity; MFS efflux transporter 815725 1044532 PP_0701 Pseudomonas putida KT2440 MFS efflux transporter NP_742862.1 814511 D 160488 CDS NP_742863.1 26987438 1044533 816050..817207 1 NC_002947.3 identified by match to PFAM protein family HMM PF03619; major facilitator family transporter 817207 1044533 PP_0702 Pseudomonas putida KT2440 major facilitator family transporter NP_742863.1 816050 D 160488 CDS NP_742864.1 26987439 1044534 complement(817215..818165) 1 NC_002947.3 similar to GB:L06139, SP:Q02763, and PID:292824; identified by sequence similarity; FecR anti-FecI sigma factor 818165 1044534 PP_0703 Pseudomonas putida KT2440 FecR anti-FecI sigma factor NP_742864.1 817215 R 160488 CDS NP_742865.1 26987440 1044535 complement(818158..818673) 1 NC_002947.3 ECF subfamily RNA polymerase sigma factor 818673 1044535 PP_0704 Pseudomonas putida KT2440 ECF subfamily RNA polymerase sigma factor NP_742865.1 818158 R 160488 CDS NP_742866.1 26987441 1044536 818845..819471 1 NC_002947.3 similar to SP:Q92383, SP:P37446, GB:X76901, and PID:436881; identified by sequence similarity; DNA-3-methyladenine glycosylase II 819471 1044536 PP_0705 Pseudomonas putida KT2440 DNA-3-methyladenine glycosylase II NP_742866.1 818845 D 160488 CDS NP_742867.1 26987442 1044537 819519..820571 1 NC_002947.3 identified by match to PFAM protein family HMM PF01035; adaptive response regulator protein 820571 ada 1044537 ada Pseudomonas putida KT2440 adaptive response regulator protein NP_742867.1 819519 D 160488 CDS NP_742868.1 26987443 1044538 820472..823039 1 NC_002947.3 identified by match to PFAM protein family HMM PF03528; mechanosensitive ion channel protein MscS 823039 1044538 PP_0707 Pseudomonas putida KT2440 mechanosensitive ion channel protein MscS NP_742868.1 820472 D 160488 CDS NP_742869.1 26987444 1044539 complement(823171..824601) 1 NC_002947.3 similar to SP:P19841, GB:X54690, and PID:45698; identified by sequence similarity; betaine aldehyde dehydrogenase 824601 1044539 PP_0708 Pseudomonas putida KT2440 betaine aldehyde dehydrogenase NP_742869.1 823171 R 160488 CDS NP_742870.1 26987445 1044540 complement(824615..826114) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00800; NCS1 nucleoside transporter 826114 1044540 PP_0709 Pseudomonas putida KT2440 NCS1 nucleoside transporter NP_742870.1 824615 R 160488 CDS NP_742871.1 26987446 1044541 complement(826207..826806) 1 NC_002947.3 hypothetical protein 826806 1044541 PP_0710 Pseudomonas putida KT2440 hypothetical protein NP_742871.1 826207 R 160488 CDS NP_742872.1 26987447 1044542 826808..827428 1 NC_002947.3 similar to GB:M17219, SP:P04898, SP:P04899, SP:P08754, and PID:386747; identified by sequence similarity; isochorismatase superfamily hydrolase 827428 1044542 PP_0711 Pseudomonas putida KT2440 isochorismatase superfamily hydrolase NP_742872.1 826808 D 160488 CDS NP_742873.1 26987448 1044543 827535..828350 1 NC_002947.3 identified by match to PFAM protein family HMM PF03976; hypothetical protein 828350 1044543 PP_0712 Pseudomonas putida KT2440 hypothetical protein NP_742873.1 827535 D 160488 CDS NP_742874.1 26987449 1044544 828387..829583 1 NC_002947.3 similar to GP:7742003; identified by sequence similarity; potassium efflux system protein 829583 1044544 PP_0713 Pseudomonas putida KT2440 potassium efflux system protein NP_742874.1 828387 D 160488 CDS NP_742875.1 26987450 1044545 829624..830721 1 NC_002947.3 similar to SP:P28607, PID:38694, SP:P28607, and PID:38694; identified by sequence similarity; permease 830721 1044545 PP_0714 Pseudomonas putida KT2440 permease NP_742875.1 829624 D 160488 CDS NP_742876.1 26987451 1044546 830725..832239 1 NC_002947.3 identified by match to PFAM protein family HMM PF02321; NodT family RND efflux system outer membrane lipoprotein 832239 1044546 PP_0715 Pseudomonas putida KT2440 NodT family RND efflux system outer membrane lipoprotein NP_742876.1 830725 D 160488 CDS NP_742877.1 26987452 1044547 832236..833333 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01730; secretion protein HlyD family protein 833333 1044547 PP_0716 Pseudomonas putida KT2440 secretion protein HlyD family protein NP_742877.1 832236 D 160488 CDS NP_742878.1 26987453 1044548 833323..834345 1 NC_002947.3 identified by match to PFAM protein family HMM PF03631; hypothetical protein 834345 1044548 PP_0717 Pseudomonas putida KT2440 hypothetical protein NP_742878.1 833323 D 160488 CDS NP_742879.1 26987454 1044549 complement(834364..836076) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04138; sulfate transporter 836076 1044549 PP_0718 Pseudomonas putida KT2440 sulfate transporter NP_742879.1 834364 R 160488 CDS NP_742880.1 26987455 1044550 complement(836253..837353) 1 NC_002947.3 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 837353 1044550 PP_0719 Pseudomonas putida KT2440 GTP-dependent nucleic acid-binding protein EngD NP_742880.1 836253 R 160488 CDS NP_742881.1 26987456 1044551 complement(837378..837962) 1 NC_002947.3 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 837962 pth 1044551 pth Pseudomonas putida KT2440 peptidyl-tRNA hydrolase NP_742881.1 837378 R 160488 CDS NP_742882.1 26987457 1044552 complement(838042..838695) 1 NC_002947.3 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 838695 1044552 PP_0721 Pseudomonas putida KT2440 50S ribosomal protein L25 NP_742882.1 838042 R 160488 CDS NP_742883.1 26987458 1044553 complement(838754..839695) 1 NC_002947.3 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 839695 prsA 1044553 prsA Pseudomonas putida KT2440 ribose-phosphate pyrophosphokinase NP_742883.1 838754 R 160488 CDS NP_742884.1 26987459 1044555 complement(839839..840699) 1 NC_002947.3 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 840699 ipk 1044555 ipk Pseudomonas putida KT2440 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase NP_742884.1 839839 R 160488 CDS NP_742885.1 26987460 1044556 complement(840704..841321) 1 NC_002947.3 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; molecular chaperone LolB 841321 lolB 1044556 lolB Pseudomonas putida KT2440 molecular chaperone LolB NP_742885.1 840704 R 160488 CDS NP_742886.1 26987461 1044557 complement(841326..843047) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00515; hypothetical protein 843047 1044557 PP_0725 Pseudomonas putida KT2440 hypothetical protein NP_742886.1 841326 R 160488 CDS NP_742887.1 26987462 1044559 complement(843516..844241) 1 NC_002947.3 similar to GP:5051798; identified by sequence similarity; transferase 844241 1044559 PP_0726 Pseudomonas putida KT2440 transferase NP_742887.1 843516 R 160488 CDS NP_742888.1 26987463 1044560 complement(844238..844840) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00888; hypothetical protein 844840 1044560 PP_0727 Pseudomonas putida KT2440 hypothetical protein NP_742888.1 844238 R 160488 CDS NP_742889.1 26987464 1044561 complement(844837..846006) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00391; hypothetical protein 846006 1044561 PP_0728 Pseudomonas putida KT2440 hypothetical protein NP_742889.1 844837 R 160488 CDS NP_742890.1 26987465 1044562 complement(846007..847197) 1 NC_002947.3 similar to GB:L28041, GB:X85789, PID:407374, PID:476745, and PID:757815; identified by sequence similarity; phosphoenolpyruvate synthase 847197 1044562 PP_0729 Pseudomonas putida KT2440 phosphoenolpyruvate synthase NP_742890.1 846007 R 160488 CDS NP_742891.1 26987466 1044563 complement(847257..848567) 1 NC_002947.3 similar to GP:4158183, and GP:4158183; identified by sequence similarity; hypothetical protein 848567 1044563 PP_0730 Pseudomonas putida KT2440 hypothetical protein NP_742891.1 847257 R 160488 CDS NP_742892.1 26987467 1044564 complement(848580..849197) 1 NC_002947.3 similar to SP:P35879; identified by sequence similarity; phosphatidylserine synthase 849197 1044564 PP_0731 Pseudomonas putida KT2440 phosphatidylserine synthase NP_742892.1 848580 R 160488 CDS NP_742893.1 26987468 1044565 851220..852497 1 NC_002947.3 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 852497 hemA 1044565 hemA Pseudomonas putida KT2440 glutamyl-tRNA reductase NP_742893.1 851220 D 160488 CDS NP_742894.1 26987469 1044566 852494..853576 1 NC_002947.3 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 853576 prfA 1044566 prfA Pseudomonas putida KT2440 peptide chain release factor 1 NP_742894.1 852494 D 160488 CDS NP_742895.1 26987470 1044567 853576..854406 1 NC_002947.3 similar to GP:9950919, GB:L34170, GB:L13852, SP:P41226, and PID:986881; identified by sequence similarity; methyl transferase 854406 hemK 1044567 hemK Pseudomonas putida KT2440 methyl transferase NP_742895.1 853576 D 160488 CDS NP_742896.1 26987471 1044568 854400..855155 1 NC_002947.3 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 855155 1044568 PP_0735 Pseudomonas putida KT2440 molybdopterin biosynthesis protein MoeB NP_742896.1 854400 D 160488 CDS NP_742897.1 26987472 1044569 855148..855945 1 NC_002947.3 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 855945 murI 1044569 murI Pseudomonas putida KT2440 glutamate racemase NP_742897.1 855148 D 160488 CDS NP_742898.1 26987473 1044570 856041..856568 1 NC_002947.3 hypothetical protein 856568 1044570 PP_0737 Pseudomonas putida KT2440 hypothetical protein NP_742898.1 856041 D 160488 CDS NP_742899.1 26987474 1044571 complement(856684..857382) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00106; hypothetical protein 857382 1044571 PP_0738 Pseudomonas putida KT2440 hypothetical protein NP_742899.1 856684 R 160488 CDS NP_742900.1 26987475 1044572 complement(857379..858821) 1 NC_002947.3 similar to GB:X56494, GB:M23725, GB:M26252, SP:P14618, SP:P14786, GB:X56494, GB:M23725, GB:M26252, SP:P14618, and SP:P14786; identified by sequence similarity; deoxyribodipyrimidine photo-lyase 858821 phrB 1044572 phrB Pseudomonas putida KT2440 deoxyribodipyrimidine photo-lyase NP_742900.1 857379 R 160488 CDS NP_742901.1 26987476 1044573 complement(858812..859711) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00376; MerR family transcriptional regulator 859711 1044573 PP_0740 Pseudomonas putida KT2440 MerR family transcriptional regulator NP_742901.1 858812 R 160488 CDS NP_742902.1 26987477 1044575 complement(859701..860669) 1 NC_002947.3 hypothetical protein 860669 1044575 PP_0741 Pseudomonas putida KT2440 hypothetical protein NP_742902.1 859701 R 160488 CDS NP_742903.1 26987478 1044577 complement(860773..861759) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01593; hypothetical protein 861759 1044577 PP_0742 Pseudomonas putida KT2440 hypothetical protein NP_742903.1 860773 R 160488 CDS NP_742904.1 26987479 1044578 861946..862851 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01746; NAD-dependent epimerase/dehydratase 862851 1044578 PP_0743 Pseudomonas putida KT2440 NAD-dependent epimerase/dehydratase NP_742904.1 861946 D 160488 CDS NP_742905.1 26987480 1044580 862865..863881 1 NC_002947.3 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 863881 hemH 1044580 hemH Pseudomonas putida KT2440 ferrochelatase NP_742905.1 862865 D 160488 CDS NP_742906.1 26987481 1044581 complement(863917..865182) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00860; uracil-xanthine permease 865182 uraA 1044581 uraA Pseudomonas putida KT2440 uracil-xanthine permease NP_742906.1 863917 R 160488 CDS NP_742907.1 26987482 1044582 complement(865185..865823) 1 NC_002947.3 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 865823 upp 1044582 upp Pseudomonas putida KT2440 uracil phosphoribosyltransferase NP_742907.1 865185 R 160488 CDS NP_742908.1 26987483 1044583 865986..866543 1 NC_002947.3 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase 866543 1044583 PP_0747 Pseudomonas putida KT2440 hypoxanthine-guanine phosphoribosyltransferase NP_742908.1 865986 D 160488 CDS NP_742909.1 26987484 1044584 866546..867019 1 NC_002947.3 hypothetical protein 867019 1044584 PP_0748 Pseudomonas putida KT2440 hypothetical protein NP_742909.1 866546 D 160488 CDS NP_742910.1 26987485 1044585 867071..867541 1 NC_002947.3 hypothetical protein 867541 1044585 PP_0749 Pseudomonas putida KT2440 hypothetical protein NP_742910.1 867071 D 160488 CDS NP_742911.1 26987486 1044586 867586..867900 1 NC_002947.3 similar to GP:9950895; identified by sequence similarity; hypothetical protein 867900 1044586 PP_0750 Pseudomonas putida KT2440 hypothetical protein NP_742911.1 867586 D 160488 CDS NP_742912.1 26987487 1044587 complement(868077..869585) 1 NC_002947.3 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 869585 mqo-1 1044587 mqo-1 Pseudomonas putida KT2440 malate:quinone oxidoreductase NP_742912.1 868077 R 160488 CDS NP_742913.1 26987488 1044588 870175..870474 1 NC_002947.3 hypothetical protein 870474 1044588 PP_0752 Pseudomonas putida KT2440 hypothetical protein NP_742913.1 870175 D 160488 CDS NP_742914.1 26987489 1044589 870566..871150 1 NC_002947.3 lipoprotein 871150 1044589 PP_0753 Pseudomonas putida KT2440 lipoprotein NP_742914.1 870566 D 160488 CDS NP_742915.1 26987490 1044590 complement(871225..871536) 1 NC_002947.3 hypothetical protein 871536 1044590 PP_0754 Pseudomonas putida KT2440 hypothetical protein NP_742915.1 871225 R 160488 CDS NP_742916.1 26987491 1044591 871604..871852 1 NC_002947.3 hypothetical protein 871852 1044591 PP_0755 Pseudomonas putida KT2440 hypothetical protein NP_742916.1 871604 D 160488 CDS NP_742917.1 26987492 1044592 complement(871888..873159) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01553; phospholipid/glycerol acyltransferase 873159 1044592 PP_0756 Pseudomonas putida KT2440 phospholipid/glycerol acyltransferase NP_742917.1 871888 R 160488 CDS NP_742918.1 26987493 1044593 873180..873365 1 NC_002947.3 hypothetical protein 873365 1044593 PP_0757 Pseudomonas putida KT2440 hypothetical protein NP_742918.1 873180 D 160488 CDS NP_742919.1 26987494 1044594 873641..874261 1 NC_002947.3 similar to GP:9950887; identified by sequence similarity; hypothetical protein 874261 1044594 PP_0758 Pseudomonas putida KT2440 hypothetical protein NP_742919.1 873641 D 160488 CDS NP_742920.1 26987495 1044595 874420..875259 1 NC_002947.3 identified by match to PFAM protein family HMM PF01435; hypothetical protein 875259 1044595 PP_0759 Pseudomonas putida KT2440 hypothetical protein NP_742920.1 874420 D 160488 CDS NP_742921.1 26987496 1044596 complement(875305..875889) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01169; hypothetical protein 875889 1044596 PP_0760 Pseudomonas putida KT2440 hypothetical protein NP_742921.1 875305 R 160488 CDS NP_742922.1 26987497 1044597 complement(876158..877156) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03602; rRNA (guanine-N(2)-)-methyltransferase 877156 1044597 PP_0761 Pseudomonas putida KT2440 rRNA (guanine-N(2)-)-methyltransferase NP_742922.1 876158 R 160488 CDS NP_742923.1 26987498 1044598 complement(877211..878176) 1 NC_002947.3 Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; glycerate dehydrogenase 878176 hprA 1044598 hprA Pseudomonas putida KT2440 glycerate dehydrogenase NP_742923.1 877211 R 160488 CDS NP_742924.1 26987499 1044599 878470..880152 1 NC_002947.3 activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 880152 1044599 PP_0763 Pseudomonas putida KT2440 long-chain-fatty-acid--CoA ligase NP_742924.1 878470 D 160488 CDS NP_742925.1 26987500 1044600 880287..880478 1 NC_002947.3 hypothetical protein 880478 1044600 PP_0764 Pseudomonas putida KT2440 hypothetical protein NP_742925.1 880287 D 160488 CDS NP_742926.1 26987501 1044601 880484..882370 1 NC_002947.3 similar to GP:9950108; identified by sequence similarity; hypothetical protein 882370 1044601 PP_0765 Pseudomonas putida KT2440 hypothetical protein NP_742926.1 880484 D 160488 CDS NP_742927.1 26987502 1044602 882396..883760 1 NC_002947.3 hypothetical protein 883760 1044602 PP_0766 Pseudomonas putida KT2440 hypothetical protein NP_742927.1 882396 D 160488 CDS NP_742928.1 26987503 1044603 884088..886805 1 NC_002947.3 similar to GP:9950105; identified by sequence similarity; LuxR family transcriptional regulator 886805 1044603 PP_0767 Pseudomonas putida KT2440 LuxR family transcriptional regulator NP_742928.1 884088 D 160488 CDS NP_742929.1 26987504 1044604 886965..888572 1 NC_002947.3 identified by match to PFAM protein family HMM PF00072; response regulator/hypothetical protein 888572 1044604 PP_0768 Pseudomonas putida KT2440 response regulator/hypothetical protein NP_742929.1 886965 D 160488 CDS NP_742930.1 26987505 1044606 888569..889261 1 NC_002947.3 similar to GP:9947604; identified by sequence similarity; histidine kinase 889261 1044606 PP_0769 Pseudomonas putida KT2440 histidine kinase NP_742930.1 888569 D 160488 CDS NP_742931.1 26987506 1044607 889455..889709 1 NC_002947.3 PemI-like protein 889709 1044607 PP_0770 Pseudomonas putida KT2440 PemI-like protein NP_742931.1 889455 D 160488 CDS NP_742932.1 26987507 1044610 889706..890053 1 NC_002947.3 toxin of the ChpB-ChpS toxin-antitoxin system; toxin ChpB 890053 1044610 PP_0771 Pseudomonas putida KT2440 toxin ChpB NP_742932.1 889706 D 160488 CDS NP_742933.1 26987508 1044611 890072..890716 1 NC_002947.3 identified by match to PFAM protein family HMM PF00753; beta-lactamase domain-containing protein 890716 1044611 PP_0772 Pseudomonas putida KT2440 beta-lactamase domain-containing protein NP_742933.1 890072 D 160488 CDS NP_742934.1 26987509 1044612 890835..891545 1 NC_002947.3 identified by match to PFAM protein family HMM PF00691; OmpA/MotB domain-containing protein 891545 1044612 PP_0773 Pseudomonas putida KT2440 OmpA/MotB domain-containing protein NP_742934.1 890835 D 160488 CDS NP_742935.1 26987510 1044613 complement(891625..893712) 1 NC_002947.3 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 893712 pta 1044613 pta Pseudomonas putida KT2440 phosphate acetyltransferase NP_742935.1 891625 R 160488 CDS NP_742936.1 26987511 1044614 complement(893744..894046) 1 NC_002947.3 similar to GB:D14657, and PID:285939; identified by sequence similarity; hypothetical protein 894046 1044614 PP_0775 Pseudomonas putida KT2440 hypothetical protein NP_742936.1 893744 R 160488 CDS NP_742937.1 26987512 1044615 894045..894530 1 NC_002947.3 similar to GB:D90277, GB:L00692, GB:M22433, GB:L00693, GB:D90278, SP:P40198, PID:219537, and PID:553220; identified by sequence similarity; FKBP-type peptidylprolyl isomerase 894530 slyD 1044615 slyD Pseudomonas putida KT2440 FKBP-type peptidylprolyl isomerase NP_742937.1 894045 D 160488 CDS NP_742938.1 26987513 1044616 894676..895158 1 NC_002947.3 identified by match to PFAM protein family HMM PF00255; glutathione peroxidase 895158 1044616 PP_0777 Pseudomonas putida KT2440 glutathione peroxidase NP_742938.1 894676 D 160488 CDS NP_742939.1 26987514 1044617 complement(895222..896412) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00534; glycoside hydrolase family protein 896412 1044617 PP_0778 Pseudomonas putida KT2440 glycoside hydrolase family protein NP_742939.1 895222 R 160488 CDS NP_742940.1 26987515 1044618 896567..897907 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00229; methyl-accepting chemotaxis transducer/sensory box protein 897907 1044618 PP_0779 Pseudomonas putida KT2440 methyl-accepting chemotaxis transducer/sensory box protein NP_742940.1 896567 D 160488 CDS NP_742941.1 26987516 1044619 897914..898018 1 NC_002947.3 hypothetical protein 898018 1044619 PP_0780 Pseudomonas putida KT2440 hypothetical protein NP_742941.1 897914 D 160488 CDS NP_742942.1 26987517 1044620 898115..898450 1 NC_002947.3 hypothetical protein 898450 1044620 PP_0781 Pseudomonas putida KT2440 hypothetical protein NP_742942.1 898115 D 160488 CDS NP_742943.1 26987518 1044621 898923..899546 1 NC_002947.3 hypothetical protein 899546 1044621 PP_0782 Pseudomonas putida KT2440 hypothetical protein NP_742943.1 898923 D 160488 CDS NP_742944.1 26987519 1044622 complement(899467..899649) 1 NC_002947.3 hypothetical protein 899649 1044622 PP_0783 Pseudomonas putida KT2440 hypothetical protein NP_742944.1 899467 R 160488 CDS NP_742945.1 26987520 1044624 899889..900506 1 NC_002947.3 hypothetical protein 900506 1044624 PP_0784 Pseudomonas putida KT2440 hypothetical protein NP_742945.1 899889 D 160488 CDS NP_742946.1 26987521 1044625 complement(900551..901279) 1 NC_002947.3 role in sulfur assimilation; sulfate transport protein CysZ 901279 1044625 PP_0785 Pseudomonas putida KT2440 sulfate transport protein CysZ NP_742946.1 900551 R 160488 CDS NP_742947.1 26987522 1044626 901610..902572 1 NC_002947.3 similar to SP:P09625; identified by sequence similarity; thioredoxin reductase 902572 trxB 1044626 trxB Pseudomonas putida KT2440 thioredoxin reductase NP_742947.1 901610 D 160488 CDS NP_742948.1 26987523 1044627 complement(902648..903496) 1 NC_002947.3 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase 903496 nadC 1044627 nadC Pseudomonas putida KT2440 nicotinate-nucleotide pyrophosphorylase NP_742948.1 902648 R 160488 CDS NP_742949.1 26987524 1044628 903662..905899 1 NC_002947.3 hypothetical protein 905899 1044628 PP_0788 Pseudomonas putida KT2440 hypothetical protein NP_742949.1 903662 D 160488 CDS NP_742950.1 26987525 1044629 905988..906560 1 NC_002947.3 similar to GP:4079828, GB:K02765, SP:P01024, PID:179665, and PID:181130; identified by sequence similarity; N-acetyl-anhydromuranmyl-L-alanine amidase 906560 ampD 1044629 ampD Pseudomonas putida KT2440 N-acetyl-anhydromuranmyl-L-alanine amidase NP_742950.1 905988 D 160488 CDS NP_742951.1 26987526 1044630 906557..907387 1 NC_002947.3 signaling modulator of AmpD, AmpE 907387 1044630 PP_0790 Pseudomonas putida KT2440 signaling modulator of AmpD, AmpE NP_742951.1 906557 D 160488 CDS NP_742952.1 26987527 1044632 complement(907432..908208) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00010; TatD family deoxyribonuclease 908208 1044632 PP_0791 Pseudomonas putida KT2440 TatD family deoxyribonuclease NP_742952.1 907432 R 160488 CDS NP_742953.1 26987528 1044633 complement(908211..909206) 1 NC_002947.3 binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 909206 fruR 1044633 fruR Pseudomonas putida KT2440 DNA-binding transcriptional regulator FruR NP_742953.1 908211 R 160488 CDS NP_742954.1 26987529 1044634 909491..912343 1 NC_002947.3 similar to SP:P23388; identified by sequence similarity; phosphoenolpyruvate-protein phosphotransferase 912343 fruB 1044634 fruB Pseudomonas putida KT2440 phosphoenolpyruvate-protein phosphotransferase NP_742954.1 909491 D 160488 CDS NP_742955.1 26987530 1044635 912344..913291 1 NC_002947.3 similar to GB:L20852, and PID:306772; identified by sequence similarity; 1-phosphofructokinase 913291 fruK 1044635 fruK Pseudomonas putida KT2440 1-phosphofructokinase NP_742955.1 912344 D 160488 CDS NP_742956.1 26987531 1044636 913288..915030 1 NC_002947.3 similar to GB:J04213, GB:L34219, SP:P12271, PID:190854, and PID:598229; identified by sequence similarity; PTS system fructose subfamily transporter subunit IIC 915030 fruA 1044636 fruA Pseudomonas putida KT2440 PTS system fructose subfamily transporter subunit IIC NP_742956.1 913288 D 160488 CDS NP_742957.1 26987532 1044637 complement(915178..915465) 1 NC_002947.3 hypothetical protein 915465 1044637 PP_0796 Pseudomonas putida KT2440 hypothetical protein NP_742957.1 915178 R 160488 CDS NP_742958.1 26987533 1044639 915538..916077 1 NC_002947.3 hypothetical protein 916077 1044639 PP_0797 Pseudomonas putida KT2440 hypothetical protein NP_742958.1 915538 D 160488 CDS NP_742959.1 26987534 1044640 complement(916074..917564) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00990; diguanylate cyclase 917564 1044640 PP_0798 Pseudomonas putida KT2440 diguanylate cyclase NP_742959.1 916074 R 160488 CDS NP_742960.1 26987535 1044642 complement(917763..919097) 1 NC_002947.3 similar to GP:9945994; identified by sequence similarity; porin 919097 1044642 PP_0799 Pseudomonas putida KT2440 porin NP_742960.1 917763 R 160488 CDS NP_742961.1 26987536 1044643 complement(919718..920470) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03692; hypothetical protein 920470 1044643 PP_0800 Pseudomonas putida KT2440 hypothetical protein NP_742961.1 919718 R 160488 CDS NP_742962.1 26987537 1044644 complement(920449..920775) 1 NC_002947.3 hypothetical protein 920775 1044644 PP_0801 Pseudomonas putida KT2440 hypothetical protein NP_742962.1 920449 R 160488 CDS NP_742963.1 26987538 1044645 complement(920849..921748) 1 NC_002947.3 similar to GP:5361003; identified by sequence similarity; chemotaxis protein CheV 921748 chev-1 1044645 chev-1 Pseudomonas putida KT2440 chemotaxis protein CheV NP_742963.1 920849 R 160488 CDS NP_742964.1 26987539 1044646 complement(921841..923025) 1 NC_002947.3 similar to GP:9947867; identified by sequence similarity; HlyD family type I secretion membrane fusion protein 923025 1044646 PP_0803 Pseudomonas putida KT2440 HlyD family type I secretion membrane fusion protein NP_742964.1 921841 R 160488 CDS NP_742965.1 26987540 1044647 complement(923022..925190) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00664; protein secretion ABC efflux system, permease and ATP-binding protein 925190 1044647 PP_0804 Pseudomonas putida KT2440 protein secretion ABC efflux system, permease and ATP-binding protein NP_742965.1 923022 R 160488 CDS NP_742966.1 26987541 1044650 complement(925187..926623) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02321; TolC family type I secretion outer membrane protein 926623 1044650 PP_0805 Pseudomonas putida KT2440 TolC family type I secretion outer membrane protein NP_742966.1 925187 R 160488 CDS NP_742967.1 26987542 1044651 complement(926687..945619) 1 NC_002947.3 similar to GP:7741985; identified by sequence similarity; surface adhesion protein 945619 1044651 PP_0806 Pseudomonas putida KT2440 surface adhesion protein NP_742967.1 926687 R 160488 CDS NP_742968.1 26987543 1044652 complement(945810..947366) 1 NC_002947.3 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 947366 1044652 PP_0807 Pseudomonas putida KT2440 anaerobic nitric oxide reductase transcriptional regulator NP_742968.1 945810 R 160488 CDS NP_742969.1 26987544 1044654 947522..948700 1 NC_002947.3 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 948700 hmpA 1044654 hmpA Pseudomonas putida KT2440 nitric oxide dioxygenase NP_742969.1 947522 D 160488 CDS NP_742970.1 26987545 1044655 949157..949663 1 NC_002947.3 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 949663 dsbB 1044655 dsbB Pseudomonas putida KT2440 disulfide bond formation protein B NP_742970.1 949157 D 160488 CDS NP_742971.1 26987546 1044658 949729..950085 1 NC_002947.3 cyoups1 protein 950085 cyoups1 1044658 cyoups1 Pseudomonas putida KT2440 cyoups1 protein NP_742971.1 949729 D 160488 CDS NP_742972.1 26987547 1044660 949961..950197 1 NC_002947.3 cyoups2 protein 950197 cyoups2 1044660 cyoups2 Pseudomonas putida KT2440 cyoups2 protein NP_742972.1 949961 D 160488 CDS NP_742973.1 26987548 1044661 950223..951164 1 NC_002947.3 similar to SP:Q9WWR1, GB:M27504, GB:Z15111, GB:S56813, GB:X68060, GB:Z15115, GB:D17023, SP:Q02880, PID:1354507, PID:2088635, PID:288565, PID:288567, PID:339810, PID:37231, and PID:38325; identified by sequence similarity; ubiquinol oxidase subunit II 951164 cyoA 1044661 cyoA Pseudomonas putida KT2440 ubiquinol oxidase subunit II NP_742973.1 950223 D 160488 CDS NP_742974.1 26987549 1044662 951168..953186 1 NC_002947.3 similar to SP:Q9WWR2; identified by sequence similarity; cytochrome o ubiquinol oxidase subunit I 953186 cyoB 1044662 cyoB Pseudomonas putida KT2440 cytochrome o ubiquinol oxidase subunit I NP_742974.1 951168 D 160488 CDS NP_742975.1 26987550 1044663 953190..953813 1 NC_002947.3 similar to SP:Q9WWR3, GB:M38083, GB:M59199, GB:M62783, SP:P17050, PID:1513067, PID:178248, and PID:189055; identified by sequence similarity; cytochrome o ubiquinol oxidase subunit III 953813 cyoC 1044663 cyoC Pseudomonas putida KT2440 cytochrome o ubiquinol oxidase subunit III NP_742975.1 953190 D 160488 CDS NP_742976.1 26987551 1044666 953813..954145 1 NC_002947.3 similar to SP:Q9WWR4, GB:X66403, SP:Q04844, and PID:560153; identified by sequence similarity; cytochrome o ubiquinol oxidase, protein CyoD 954145 cyoD 1044666 cyoD Pseudomonas putida KT2440 cytochrome o ubiquinol oxidase, protein CyoD NP_742976.1 953813 D 160488 CDS NP_742977.1 26987552 1044667 954157..955044 1 NC_002947.3 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 955044 cyoE-2 1044667 cyoE-2 Pseudomonas putida KT2440 protoheme IX farnesyltransferase NP_742977.1 954157 D 160488 CDS NP_742978.1 26987553 1044669 955357..956565 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01141; aminotransferase 956565 1044669 PP_0817 Pseudomonas putida KT2440 aminotransferase NP_742978.1 955357 D 160488 CDS NP_742979.1 26987554 1044670 956571..957806 1 NC_002947.3 hypothetical protein 957806 1044670 PP_0818 Pseudomonas putida KT2440 hypothetical protein NP_742979.1 956571 D 160488 CDS NP_742980.1 26987555 1044671 957968..958351 1 NC_002947.3 identified by match to PFAM protein family HMM PF03692; hypothetical protein 958351 1044671 PP_0819 Pseudomonas putida KT2440 hypothetical protein NP_742980.1 957968 D 160488 CDS NP_742981.1 26987556 1044675 958544..959107 1 NC_002947.3 identified by match to PFAM protein family HMM PF00583; acetyltransferase 959107 1044675 PP_0820 Pseudomonas putida KT2440 acetyltransferase NP_742981.1 958544 D 160488 CDS NP_742982.1 26987557 1044676 959730..960140 1 NC_002947.3 similar to GB:M86752, SP:P31948, PID:184565, GB:M86752, SP:P31948, and PID:184565; identified by sequence similarity; hypothetical protein 960140 1044676 PP_0821 Pseudomonas putida KT2440 hypothetical protein NP_742982.1 959730 D 160488 CDS NP_742983.1 26987558 1044677 complement(960266..961378) 1 NC_002947.3 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 961378 1044677 PP_0822 Pseudomonas putida KT2440 tRNA 2-selenouridine synthase NP_742983.1 960266 R 160488 CDS NP_742984.1 26987559 1044679 complement(961378..962412) 1 NC_002947.3 catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 962412 selD 1044679 selD Pseudomonas putida KT2440 selenophosphate synthetase NP_742984.1 961378 R 160488 CDS NP_742985.1 26987560 1044680 962539..963393 1 NC_002947.3 similar to GP:9949442, GB:L02932, GB:Y07619, SP:Q07869, PID:1514595, PID:1526972, and PID:307341; identified by sequence similarity; phosphonate ABC transporter substrate-binding protein 963393 1044680 PP_0824 Pseudomonas putida KT2440 phosphonate ABC transporter substrate-binding protein NP_742985.1 962539 D 160488 CDS NP_742986.1 26987561 1044681 963390..964199 1 NC_002947.3 similar to GB:M83670, SP:P22748, PID:179791, and PID:409726; identified by sequence similarity; phosphate ABC transporter ATP-binding protein 964199 1044681 PP_0825 Pseudomonas putida KT2440 phosphate ABC transporter ATP-binding protein NP_742986.1 963390 D 160488 CDS NP_742987.1 26987562 1044682 964193..965020 1 NC_002947.3 similar to SP:P16683; identified by sequence similarity; phosphate ABC transporter permease 965020 1044682 PP_0826 Pseudomonas putida KT2440 phosphate ABC transporter permease NP_742987.1 964193 D 160488 CDS NP_742988.1 26987563 1044683 965017..965784 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01726; phosphonate ABC transporter inner membrane protein 965784 1044683 PP_0827 Pseudomonas putida KT2440 phosphonate ABC transporter inner membrane protein NP_742988.1 965017 D 160488 CDS NP_742989.1 26987564 1044685 complement(965821..966792) 1 NC_002947.3 similar to GP:8037798, SP:P32109, GB:U15124, and PID:563996; identified by sequence similarity; hypothetical protein 966792 1044685 PP_0828 Pseudomonas putida KT2440 hypothetical protein NP_742989.1 965821 R 160488 CDS NP_742990.1 26987565 1044686 967033..967329 1 NC_002947.3 identified by match to PFAM protein family HMM PF01381; hypothetical protein 967329 1044686 PP_0829 Pseudomonas putida KT2440 hypothetical protein NP_742990.1 967033 D 160488 CDS NP_742991.1 26987566 1044688 complement(967340..967819) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01575; acetyltransferase 967819 1044688 PP_0830 Pseudomonas putida KT2440 acetyltransferase NP_742991.1 967340 R 160488 CDS NP_742992.1 26987567 1044689 complement(967987..968718) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01087; hypothetical protein 968718 1044689 PP_0831 Pseudomonas putida KT2440 hypothetical protein NP_742992.1 967987 R 160488 CDS NP_742993.1 26987568 1044690 969086..970135 1 NC_002947.3 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 970135 queA 1044690 queA Pseudomonas putida KT2440 S-adenosylmethionine--tRNA ribosyltransferase-isomerase NP_742993.1 969086 D 160488 CDS NP_742994.1 26987569 1044691 970150..971265 1 NC_002947.3 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 971265 tgt 1044691 tgt Pseudomonas putida KT2440 queuine tRNA-ribosyltransferase NP_742994.1 970150 D 160488 CDS NP_742995.1 26987570 1044692 971308..971643 1 NC_002947.3 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 971643 yajC 1044692 yajC Pseudomonas putida KT2440 preprotein translocase subunit YajC NP_742995.1 971308 D 160488 CDS NP_742996.1 26987571 1044695 971707..973569 1 NC_002947.3 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 973569 secD 1044695 secD Pseudomonas putida KT2440 preprotein translocase subunit SecD NP_742996.1 971707 D 160488 CDS NP_742997.1 26987572 1044696 973580..974488 1 NC_002947.3 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 974488 secF 1044696 secF Pseudomonas putida KT2440 preprotein translocase subunit SecF NP_742997.1 973580 D 160488 CDS NP_742998.1 26987573 1044697 974607..975149 1 NC_002947.3 similar to GP:9949993; identified by sequence similarity; hypothetical protein 975149 1044697 PP_0837 Pseudomonas putida KT2440 hypothetical protein NP_742998.1 974607 D 160488 CDS NP_742999.1 26987574 1044698 complement(975318..976136) 1 NC_002947.3 similar to GB:X56692, GB:M11725, GB:M11880, GB:M35163, SP:P02741, PID:181066, PID:181068, PID:181073, and PID:30213; identified by sequence similarity; inositol-phosphate phosphatase 976136 suhB 1044698 suhB Pseudomonas putida KT2440 inositol-phosphate phosphatase NP_742999.1 975318 R 160488 CDS NP_743000.1 26987575 1044700 976288..977043 1 NC_002947.3 identified by match to PFAM protein family HMM PF00588; RNA methyltransferase 977043 1044700 PP_0839 Pseudomonas putida KT2440 RNA methyltransferase NP_743000.1 976288 D 160488 CDS NP_743001.1 26987576 1044701 977047..977832 1 NC_002947.3 identified by match to PFAM protein family HMM PF00132; serine O-acetyltransferase 977832 cysE 1044701 cysE Pseudomonas putida KT2440 serine O-acetyltransferase NP_743001.1 977047 D 160488 CDS NP_743002.1 26987577 1044703 978012..978503 1 NC_002947.3 identified by match to PFAM protein family HMM PF02082; BadM/Rrf2 family transcriptional regulator 978503 1044703 PP_0841 Pseudomonas putida KT2440 BadM/Rrf2 family transcriptional regulator NP_743002.1 978012 D 160488 CDS NP_743003.1 26987578 1044704 978549..979763 1 NC_002947.3 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 979763 iscS 1044704 iscS Pseudomonas putida KT2440 cysteine desulfurase NP_743003.1 978549 D 160488 CDS NP_743004.1 26987579 1044705 979810..980196 1 NC_002947.3 identified by match to PFAM protein family HMM PF01592; scaffold protein 980196 iscU 1044705 iscU Pseudomonas putida KT2440 scaffold protein NP_743004.1 979810 D 160488 CDS NP_743005.1 26987580 1044706 980225..980548 1 NC_002947.3 similar to GB:D90244, PID:216809, GB:D90244, and PID:216809; identified by sequence similarity; iron-sulfur cluster assembly protein IscA 980548 iscA 1044706 iscA Pseudomonas putida KT2440 iron-sulfur cluster assembly protein IscA NP_743005.1 980225 D 160488 CDS NP_743006.1 26987581 1044708 980557..981078 1 NC_002947.3 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 981078 hscB 1044708 hscB Pseudomonas putida KT2440 co-chaperone HscB NP_743006.1 980557 D 160488 CDS NP_743007.1 26987582 1044710 981122..982984 1 NC_002947.3 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 982984 hscA 1044710 hscA Pseudomonas putida KT2440 chaperone protein HscA NP_743007.1 981122 D 160488 CDS NP_743008.1 26987583 1044711 982988..983329 1 NC_002947.3 similar to SP:P44428; identified by sequence similarity; (2Fe-2S) ferredoxin 983329 1044711 PP_0847 Pseudomonas putida KT2440 (2Fe-2S) ferredoxin NP_743008.1 982988 D 160488 CDS NP_743009.1 26987584 1044712 983340..983540 1 NC_002947.3 similar to SP:Q03047, and SP:Q03047; identified by sequence similarity; hypothetical protein 983540 1044712 PP_0848 Pseudomonas putida KT2440 hypothetical protein NP_743009.1 983340 D 160488 CDS NP_743010.1 26987585 1044713 983629..984054 1 NC_002947.3 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 984054 ndk 1044713 ndk Pseudomonas putida KT2440 nucleoside diphosphate kinase NP_743010.1 983629 D 160488 CDS NP_743011.1 26987586 1044715 984083..985228 1 NC_002947.3 identified by match to PFAM protein family HMM PF04055; radical SAM enzyme, Cfr family 985228 1044715 PP_0850 Pseudomonas putida KT2440 radical SAM enzyme, Cfr family NP_743011.1 984083 D 160488 CDS NP_743012.1 26987587 1044718 985237..986004 1 NC_002947.3 identified by match to PFAM protein family HMM PF00515; type IV pilus biogenesis/stability protein PilW 986004 pilF 1044718 pilF Pseudomonas putida KT2440 type IV pilus biogenesis/stability protein PilW NP_743012.1 985237 D 160488 CDS NP_743013.1 26987588 1044719 986001..987008 1 NC_002947.3 identified by match to PFAM protein family HMM PF01381; Cro/CI family transcriptional regulator 987008 1044719 PP_0852 Pseudomonas putida KT2440 Cro/CI family transcriptional regulator NP_743013.1 986001 D 160488 CDS NP_743014.1 26987589 1044720 987012..988121 1 NC_002947.3 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 988121 ispG 1044720 ispG Pseudomonas putida KT2440 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase NP_743014.1 987012 D 160488 CDS NP_743015.1 26987590 1044721 988147..989436 1 NC_002947.3 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 989436 hisS 1044721 hisS Pseudomonas putida KT2440 histidyl-tRNA synthetase NP_743015.1 988147 D 160488 CDS NP_743016.1 26987591 1044723 989476..990117 1 NC_002947.3 similar to GP:9949974; identified by sequence similarity; hypothetical protein 990117 1044723 PP_0855 Pseudomonas putida KT2440 hypothetical protein NP_743016.1 989476 D 160488 CDS NP_743017.1 26987592 1044724 990118..991260 1 NC_002947.3 identified by match to PFAM protein family HMM PF01011; hypothetical protein 991260 1044724 PP_0856 Pseudomonas putida KT2440 hypothetical protein NP_743017.1 990118 D 160488 CDS NP_743018.1 26987593 1044725 991377..992840 1 NC_002947.3 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 992840 engA 1044725 engA Pseudomonas putida KT2440 GTP-binding protein EngA NP_743018.1 991377 D 160488 CDS NP_743019.1 26987594 1044727 992992..994140 1 NC_002947.3 catalyzes the transfer of an amino moiety; aminotransferase 994140 1044727 PP_0858 Pseudomonas putida KT2440 aminotransferase NP_743019.1 992992 D 160488 CDS NP_743020.1 26987595 1044729 994128..994919 1 NC_002947.3 identified by match to PFAM protein family HMM PF00795; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 994919 1044729 PP_0859 Pseudomonas putida KT2440 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase NP_743020.1 994128 D 160488 CDS NP_743021.1 26987596 1044731 complement(995044..997593) 1 NC_002947.3 similar to SP:P38039, SP:P16169, GB:X51944, and PID:457801; identified by sequence similarity; flavodoxin/nitric oxide synthase 997593 1044731 PP_0860 Pseudomonas putida KT2440 flavodoxin/nitric oxide synthase NP_743021.1 995044 R 160488 CDS NP_743022.1 26987597 1044732 complement(997825..1000167) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00593; TonB-dependent siderophore receptor 1000167 1044732 PP_0861 Pseudomonas putida KT2440 TonB-dependent siderophore receptor NP_743022.1 997825 R 160488 CDS NP_743023.1 26987598 1044734 1000338..1001018 1 NC_002947.3 identified by match to PFAM protein family HMM PF03171; hydroxylase 1001018 1044734 PP_0862 Pseudomonas putida KT2440 hydroxylase NP_743023.1 1000338 D 160488 CDS NP_743024.1 26987599 1044737 1001022..1001792 1 NC_002947.3 Sel1 domain-containing protein repeat-containing protein 1001792 1044737 PP_0863 Pseudomonas putida KT2440 Sel1 domain-containing protein repeat-containing protein NP_743024.1 1001022 D 160488 CDS NP_743025.1 26987600 1044738 complement(1001821..1002936) 1 NC_002947.3 similar to SP:P06118, PID:38731, and PID:38756; identified by sequence similarity; ornithine decarboxylase 1002936 1044738 PP_0864 Pseudomonas putida KT2440 ornithine decarboxylase NP_743025.1 1001821 R 160488 CDS NP_743026.1 26987601 1044741 1003492..1003977 1 NC_002947.3 identified by match to PFAM protein family HMM PF00776; ECF subfamily RNA polymerase sigma-24 subunit 1003977 1044741 PP_0865 Pseudomonas putida KT2440 ECF subfamily RNA polymerase sigma-24 subunit NP_743026.1 1003492 D 160488 CDS NP_743027.1 26987602 1044743 1003974..1004960 1 NC_002947.3 similar to GP:9947237; identified by sequence similarity; FecR anti-FecI sigma factor 1004960 1044743 PP_0866 Pseudomonas putida KT2440 FecR anti-FecI sigma factor NP_743027.1 1003974 D 160488 CDS NP_743028.1 26987603 1044744 1005069..1007498 1 NC_002947.3 similar to GB:Z24721, PID:1147590, PID:394739, and PID:404251; identified by sequence similarity; FecA-like outer membrane receptor 1007498 1044744 PP_0867 Pseudomonas putida KT2440 FecA-like outer membrane receptor NP_743028.1 1005069 D 160488 CDS NP_743029.1 26987604 1044745 complement(1007588..1008745) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00968; glycine betaine/L-proline ABC transporter ATPase 1008745 1044745 PP_0868 Pseudomonas putida KT2440 glycine betaine/L-proline ABC transporter ATPase NP_743029.1 1007588 R 160488 CDS NP_743030.1 26987605 1044746 complement(1008742..1009395) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04306; binding-protein-dependent transport system inner membrane protein 1009395 1044746 PP_0869 Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_743030.1 1008742 R 160488 CDS NP_743031.1 26987606 1044747 complement(1009392..1010333) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04069; glycine betaine ABC transporter substrate-binding protein 1010333 1044747 PP_0870 Pseudomonas putida KT2440 glycine betaine ABC transporter substrate-binding protein NP_743031.1 1009392 R 160488 CDS NP_743032.1 26987607 1044748 complement(1010317..1011060) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01726; binding-protein-dependent transport system inner membrane protein 1011060 1044748 PP_0871 Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_743032.1 1010317 R 160488 CDS NP_743033.1 26987608 1044749 1011587..1013170 1 NC_002947.3 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1013170 prfC 1044749 prfC Pseudomonas putida KT2440 peptide chain release factor 3 NP_743033.1 1011587 D 160488 CDS NP_743034.1 26987609 1044751 complement(1013301..1014380) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01547; polyamine ABC transporter substrate-binding protein 1014380 1044751 PP_0873 Pseudomonas putida KT2440 polyamine ABC transporter substrate-binding protein NP_743034.1 1013301 R 160488 CDS NP_743035.1 26987610 1044752 complement(1014433..1014774) 1 NC_002947.3 hypothetical protein 1014774 1044752 PP_0874 Pseudomonas putida KT2440 hypothetical protein NP_743035.1 1014433 R 160488 CDS NP_743036.1 26987611 1044753 complement(1014808..1016238) 1 NC_002947.3 similar to GP:9949563; identified by sequence similarity; FAD dependent oxidoreductase 1016238 1044753 PP_0875 Pseudomonas putida KT2440 FAD dependent oxidoreductase NP_743036.1 1014808 R 160488 CDS NP_743037.1 26987612 1044756 complement(1016279..1017103) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 1017103 1044756 PP_0876 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_743037.1 1016279 R 160488 CDS NP_743038.1 26987613 1044758 complement(1017155..1017250) 1 NC_002947.3 hypothetical protein 1017250 1044758 PP_0877 Pseudomonas putida KT2440 hypothetical protein NP_743038.1 1017155 R 160488 CDS NP_743039.1 26987614 1044759 complement(1018090..1019058) 1 NC_002947.3 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit 1019058 dppF 1044759 dppF Pseudomonas putida KT2440 dipeptide transporter ATP-binding subunit NP_743039.1 1018090 R 160488 CDS NP_743040.1 26987615 1044760 complement(1019058..1020026) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01727; oligopeptide/dipeptide ABC transporter ATPase 1020026 dppD 1044760 dppD Pseudomonas putida KT2440 oligopeptide/dipeptide ABC transporter ATPase NP_743040.1 1019058 R 160488 CDS NP_743041.1 26987616 1044761 complement(1020037..1020963) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04172; binding-protein-dependent transport system inner membrane protein 1020963 dppC 1044761 dppC Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_743041.1 1020037 R 160488 CDS NP_743042.1 26987617 1044762 complement(1020974..1021984) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01726; alkaline phosphatase 1021984 dppB 1044762 dppB Pseudomonas putida KT2440 alkaline phosphatase NP_743042.1 1020974 R 160488 CDS NP_743043.1 26987618 1044764 complement(1022076..1023710) 1 NC_002947.3 similar to GB:L11353, GB:Z22664, GB:X72655, SP:P35240, PID:292292, PID:312043, and PID:825719; identified by sequence similarity; peptide ABC transporter substrate-binding protein 1023710 dppA 1044764 dppA Pseudomonas putida KT2440 peptide ABC transporter substrate-binding protein NP_743043.1 1022076 R 160488 CDS NP_743044.1 26987619 1044767 complement(1023765..1025144) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03573; porin 1025144 1044767 PP_0883 Pseudomonas putida KT2440 porin NP_743044.1 1023765 R 160488 CDS NP_743045.1 26987620 1044769 complement(1025373..1026965) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00496; peptide ABC transporter substrate-binding protein 1026965 1044769 PP_0884 Pseudomonas putida KT2440 peptide ABC transporter substrate-binding protein NP_743045.1 1025373 R 160488 CDS NP_743046.1 26987621 1044770 complement(1027112..1028737) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00496; peptide ABC transporter substrate-binding protein 1028737 1044770 PP_0885 Pseudomonas putida KT2440 peptide ABC transporter substrate-binding protein NP_743046.1 1027112 R 160488 CDS NP_743047.1 26987622 1044772 complement(1029118..1029834) 1 NC_002947.3 hypothetical protein 1029834 1044772 PP_0886 Pseudomonas putida KT2440 hypothetical protein NP_743047.1 1029118 R 160488 CDS NP_743048.1 26987623 1044773 1029941..1031293 1 NC_002947.3 identified by match to PFAM protein family HMM PF04093; integral membrane sensor signal transduction histidine kinase 1031293 1044773 PP_0887 Pseudomonas putida KT2440 integral membrane sensor signal transduction histidine kinase NP_743048.1 1029941 D 160488 CDS NP_743049.1 26987624 1044774 1031293..1031853 1 NC_002947.3 identified by match to PFAM protein family HMM PF00072; Fis family transcriptional regulator 1031853 1044774 PP_0888 Pseudomonas putida KT2440 Fis family transcriptional regulator NP_743049.1 1031293 D 160488 CDS NP_743050.1 26987625 1044777 1031905..1033041 1 NC_002947.3 beta-lactamase 1033041 1044777 PP_0889 Pseudomonas putida KT2440 beta-lactamase NP_743050.1 1031905 D 160488 CDS NP_743051.1 26987626 1044778 1033038..1033334 1 NC_002947.3 hypothetical protein 1033334 1044778 PP_0890 Pseudomonas putida KT2440 hypothetical protein NP_743051.1 1033038 D 160488 CDS NP_743052.1 26987627 1044779 1033379..1033960 1 NC_002947.3 similar to GP:9950566; identified by sequence similarity; hypothetical protein 1033960 1044779 PP_0891 Pseudomonas putida KT2440 hypothetical protein NP_743052.1 1033379 D 160488 CDS NP_743053.1 26987628 1044780 1033962..1035119 1 NC_002947.3 identified by match to PFAM protein family HMM PF00614; phospholipase 1035119 1044780 PP_0892 Pseudomonas putida KT2440 phospholipase NP_743053.1 1033962 D 160488 CDS NP_743054.1 26987629 1044781 1035162..1035749 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01737; Pfpi family intracellular protease 1035749 1044781 PP_0893 Pseudomonas putida KT2440 Pfpi family intracellular protease NP_743054.1 1035162 D 160488 CDS NP_743055.1 26987630 1044782 complement(1035780..1036178) 1 NC_002947.3 similar to GP:15075332; identified by sequence similarity; hypothetical protein 1036178 1044782 PP_0894 Pseudomonas putida KT2440 hypothetical protein NP_743055.1 1035780 R 160488 CDS NP_743056.1 26987631 1044783 1036294..1036884 1 NC_002947.3 similar to GB:M81461, SP:P27028, SP:P27195, GB:X63674, PID:148698, GB:M81461, SP:P27028, SP:P27195, GB:X63674, and PID:148698; identified by sequence similarity; hypothetical protein 1036884 1044783 PP_0895 Pseudomonas putida KT2440 hypothetical protein NP_743056.1 1036294 D 160488 CDS NP_743057.1 26987632 1044784 1036881..1037753 1 NC_002947.3 similar to GB:D10980, SP:P27028, SP:P27195, GB:X63674, PID:216707, and PID:456523; identified by sequence similarity; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1037753 1044784 PP_0896 Pseudomonas putida KT2440 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase NP_743057.1 1036881 D 160488 CDS NP_743058.1 26987633 1044785 complement(1037869..1039392) 1 NC_002947.3 similar to GP:9950558, and SP:P00923; identified by sequence similarity; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha 1039392 1044785 PP_0897 Pseudomonas putida KT2440 Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha NP_743058.1 1037869 R 160488 CDS NP_743059.1 26987634 1044786 complement(1039407..1039577) 1 NC_002947.3 hypothetical protein 1039577 1044786 PP_0898 Pseudomonas putida KT2440 hypothetical protein NP_743059.1 1039407 R 160488 CDS NP_743060.1 26987635 1044787 1039642..1040562 1 NC_002947.3 similar to GP:9950556; identified by sequence similarity; hypothetical protein 1040562 1044787 PP_0899 Pseudomonas putida KT2440 hypothetical protein NP_743060.1 1039642 D 160488 CDS NP_743061.1 26987636 1044789 complement(1040604..1041332) 1 NC_002947.3 similar to GP:9950612; identified by sequence similarity; PAP2 family protein 1041332 1044789 PP_0900 Pseudomonas putida KT2440 PAP2 family protein NP_743061.1 1040604 R 160488 CDS NP_743062.1 26987637 1044792 1041516..1042199 1 NC_002947.3 similar to GB:M98830, SP:P25520, GB:X59940, PID:146073, PID:42026, GB:U00096, PID:1651627, PID:1651636, PID:1787488, PID:1805513, GB:M98830, SP:P25520, GB:X59940, PID:146073, PID:42026, GB:U00096, PID:1651627, PID:1651636, PID:1787488, and PID:1805513; identified by sequence similarity; winged helix family two component transcriptional regulator 1042199 colR 1044792 colR Pseudomonas putida KT2440 winged helix family two component transcriptional regulator NP_743062.1 1041516 D 160488 CDS NP_743063.1 26987638 1044793 1042156..1043499 1 NC_002947.3 similar to GP:13892069, GB:M84993, SP:P26462, GB:X52093, and PID:154021; identified by sequence similarity; integral membrane sensor signal transduction histidine kinase 1043499 1044793 PP_0902 Pseudomonas putida KT2440 integral membrane sensor signal transduction histidine kinase NP_743063.1 1042156 D 160488 CDS NP_743064.1 26987639 1044794 1043607..1044287 1 NC_002947.3 similar to GB:D21144, PID:415277, PID:882432, SP:P52037, PID:2160242, PID:2367175, GB:D21144, PID:415277, PID:882432, SP:P52037, PID:2160242, and PID:2367175; identified by sequence similarity; type 11 methyltransferase 1044287 1044794 PP_0903 Pseudomonas putida KT2440 type 11 methyltransferase NP_743064.1 1043607 D 160488 CDS NP_743065.1 26987640 1044795 1044291..1044992 1 NC_002947.3 lipopolysaccharide kinase 1044992 1044795 PP_0904 Pseudomonas putida KT2440 lipopolysaccharide kinase NP_743065.1 1044291 D 160488 CDS NP_743066.1 26987641 1044796 1044992..1045225 1 NC_002947.3 hypothetical protein 1045225 1044796 PP_0905 Pseudomonas putida KT2440 hypothetical protein NP_743066.1 1044992 D 160488 CDS NP_743067.1 26987642 1044798 complement(1045331..1048375) 1 NC_002947.3 MexW; inner membrane protein; member of RND (resistance, nodulation, and division) family; involved in resistance to fluoroquinolones, tetracycline, chloramphenicol, erythromycin, ethidium bromide, and acriflavine; functions along with MexV and OprM; multidrug efflux protein 1048375 1044798 PP_0906 Pseudomonas putida KT2440 multidrug efflux protein NP_743067.1 1045331 R 160488 CDS NP_743068.1 26987643 1044801 complement(1048377..1049597) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01730; RND efflux membrane fusion protein-like protein 1049597 1044801 PP_0907 Pseudomonas putida KT2440 RND efflux membrane fusion protein-like protein NP_743068.1 1048377 R 160488 CDS NP_743069.1 26987644 1044803 complement(1049753..1050850) 1 NC_002947.3 similar to GP:9950602; identified by sequence similarity; hypothetical protein 1050850 1044803 PP_0908 Pseudomonas putida KT2440 hypothetical protein NP_743069.1 1049753 R 160488 CDS NP_743070.1 26987645 1044805 complement(1050853..1051917) 1 NC_002947.3 hypothetical protein 1051917 1044805 PP_0909 Pseudomonas putida KT2440 hypothetical protein NP_743070.1 1050853 R 160488 CDS NP_743071.1 26987646 1044806 complement(1051937..1053364) 1 NC_002947.3 hypothetical protein 1053364 1044806 PP_0910 Pseudomonas putida KT2440 hypothetical protein NP_743071.1 1051937 R 160488 CDS NP_743072.1 26987647 1044809 complement(1053474..1053860) 1 NC_002947.3 hypothetical protein 1053860 1044809 PP_0911 Pseudomonas putida KT2440 hypothetical protein NP_743072.1 1053474 R 160488 CDS NP_743073.1 26987648 1044810 complement(1053874..1054461) 1 NC_002947.3 hypothetical protein 1054461 1044810 PP_0912 Pseudomonas putida KT2440 hypothetical protein NP_743073.1 1053874 R 160488 CDS NP_743074.1 26987649 1044812 complement(1054498..1055829) 1 NC_002947.3 similar to GP:9950599; identified by sequence similarity; hypothetical protein 1055829 1044812 PP_0913 Pseudomonas putida KT2440 hypothetical protein NP_743074.1 1054498 R 160488 CDS NP_743075.1 26987650 1044813 complement(1055988..1058069) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00990; diguanylate cyclase 1058069 1044813 PP_0914 Pseudomonas putida KT2440 diguanylate cyclase NP_743075.1 1055988 R 160488 CDS NP_743076.1 26987651 1044816 complement(1058289..1058885) 1 NC_002947.3 similar to GP:1498060, SP:P04741, GB:X03923, GB:Z37500, PID:537154, PID:581086, PID:732682, GB:U00096, PID:1790768, and PID:1816486; identified by sequence similarity; superoxide dismutase 1058885 sodB 1044816 sodB Pseudomonas putida KT2440 superoxide dismutase NP_743076.1 1058289 R 160488 CDS NP_743077.1 26987652 1044817 complement(1059152..1059766) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01810; amino acid transporter LysE 1059766 1044817 PP_0916 Pseudomonas putida KT2440 amino acid transporter LysE NP_743077.1 1059152 R 160488 CDS NP_743078.1 26987653 1044819 1059853..1060743 1 NC_002947.3 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 1060743 1044819 PP_0917 Pseudomonas putida KT2440 chromosome replication initiation inhibitor protein NP_743078.1 1059853 D 160488 CDS NP_743079.1 26987654 1044820 1060793..1061785 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01746; NAD-dependent epimerase/dehydratase 1061785 1044820 PP_0918 Pseudomonas putida KT2440 NAD-dependent epimerase/dehydratase NP_743079.1 1060793 D 160488 CDS NP_743080.1 26987655 1044821 1062198..1062728 1 NC_002947.3 similar to GP:9950588, and GP:9950588; identified by sequence similarity; hypothetical protein 1062728 1044821 PP_0919 Pseudomonas putida KT2440 hypothetical protein NP_743080.1 1062198 D 160488 CDS NP_743081.1 26987656 1044822 complement(1062837..1063886) 1 NC_002947.3 similar to GP:6049283, and GP:6049283; identified by sequence similarity; NADH:flavin oxidoreductase 1063886 xenB 1044822 xenB Pseudomonas putida KT2440 NADH:flavin oxidoreductase NP_743081.1 1062837 R 160488 CDS NP_743082.1 26987657 1044823 complement(1063904..1064206) 1 NC_002947.3 similar to GB:M63573, GB:M60857, GB:M60457, SP:P23284, PID:181250, PID:181335, and PID:337999; identified by sequence similarity; ArsR family transcriptional regulator 1064206 1044823 PP_0921 Pseudomonas putida KT2440 ArsR family transcriptional regulator NP_743082.1 1063904 R 160488 CDS NP_743083.1 26987658 1044824 1064357..1064941 1 NC_002947.3 hypothetical protein 1064941 1044824 PP_0922 Pseudomonas putida KT2440 hypothetical protein NP_743083.1 1064357 D 160488 CDS NP_743084.1 26987659 1044825 complement(1065054..1065842) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00530; phospholipid/glycerol acyltransferase 1065842 1044825 PP_0923 Pseudomonas putida KT2440 phospholipid/glycerol acyltransferase NP_743084.1 1065054 R 160488 CDS NP_743085.1 26987660 1044826 complement(1065842..1066597) 1 NC_002947.3 similar to GP:9950577; identified by sequence similarity; hypothetical protein 1066597 1044826 PP_0924 Pseudomonas putida KT2440 hypothetical protein NP_743085.1 1065842 R 160488 CDS NP_743086.1 26987661 1044828 1066758..1067645 1 NC_002947.3 similar to GP:9950576; identified by sequence similarity; hypothetical protein 1067645 1044828 PP_0925 Pseudomonas putida KT2440 hypothetical protein NP_743086.1 1066758 D 160488 CDS NP_743087.1 26987662 1044829 1067833..1068780 1 NC_002947.3 similar to GB:M68878, SP:Q00853, and PID:144879; identified by sequence similarity; auxin efflux carrier 1068780 1044829 PP_0926 Pseudomonas putida KT2440 auxin efflux carrier NP_743087.1 1067833 D 160488 CDS NP_743088.1 26987663 1044830 1068837..1070198 1 NC_002947.3 similar to GB:J05272, SP:P20839, and PID:307067; identified by sequence similarity; amino acid ABC transporter permease 1070198 aroP 1044830 aroP Pseudomonas putida KT2440 amino acid ABC transporter permease NP_743088.1 1068837 D 160488 CDS NP_743089.1 26987664 1044831 complement(1070340..1071383) 1 NC_002947.3 similar to GB:U22314, PID:1621501, PID:606944, and PID:606948; identified by sequence similarity; CaCA family Na+/Ca+ antiporter 1071383 1044831 PP_0928 Pseudomonas putida KT2440 CaCA family Na+/Ca+ antiporter NP_743089.1 1070340 R 160488 CDS NP_743090.1 26987665 1044832 complement(1071444..1071818) 1 NC_002947.3 similar to GP:4887206; identified by sequence similarity; rare lipoprotein A 1071818 1044832 PP_0929 Pseudomonas putida KT2440 rare lipoprotein A NP_743090.1 1071444 R 160488 CDS NP_743091.1 26987666 1044833 complement(1071945..1073390) 1 NC_002947.3 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 1073390 gatB 1044833 gatB Pseudomonas putida KT2440 aspartyl/glutamyl-tRNA amidotransferase subunit B NP_743091.1 1071945 R 160488 CDS NP_743092.1 26987667 1044835 complement(1073402..1074853) 1 NC_002947.3 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 1074853 gatA 1044835 gatA Pseudomonas putida KT2440 aspartyl/glutamyl-tRNA amidotransferase subunit A NP_743092.1 1073402 R 160488 CDS NP_743093.2 161378141 1044838 complement(1074869..1075156) 1 NC_002947.3 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 1075156 gatC 1044838 gatC Pseudomonas putida KT2440 aspartyl/glutamyl-tRNA amidotransferase subunit C NP_743093.2 1074869 R 160488 CDS NP_743094.2 228994959 1044840 1075362..1076399 1 NC_002947.3 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 1076399 mreB 1044840 mreB Pseudomonas putida KT2440 rod shape-determining protein MreB NP_743094.2 1075362 D 160488 CDS NP_743095.1 26987670 1044842 1076620..1077618 1 NC_002947.3 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 1077618 mreC 1044842 mreC Pseudomonas putida KT2440 rod shape-determining protein MreC NP_743095.1 1076620 D 160488 CDS NP_743096.1 26987671 1044843 1077615..1078106 1 NC_002947.3 identified by match to PFAM protein family HMM PF04093; rod shape-determining protein MreD 1078106 mreD 1044843 mreD Pseudomonas putida KT2440 rod shape-determining protein MreD NP_743096.1 1077615 D 160488 CDS NP_743097.1 26987672 1044844 1078139..1078750 1 NC_002947.3 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1078750 maf 1044844 maf Pseudomonas putida KT2440 Maf-like protein NP_743097.1 1078139 D 160488 CDS NP_743098.1 26987673 1044846 1078804..1080261 1 NC_002947.3 similar to GB:M14058, SP:P00736, PID:179644, and PID:29539; identified by sequence similarity; Rne/Rng family ribonuclease 1080261 cafA 1044846 cafA Pseudomonas putida KT2440 Rne/Rng family ribonuclease NP_743098.1 1078804 D 160488 CDS NP_743099.1 26987674 1044847 1080344..1084165 1 NC_002947.3 similar to GP:9950713; identified by sequence similarity; hypothetical protein 1084165 1044847 PP_0938 Pseudomonas putida KT2440 hypothetical protein NP_743099.1 1080344 D 160488 CDS NP_743100.1 26987675 1044848 1084174..1085025 1 NC_002947.3 identified by match to PFAM protein family HMM PF00795; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1085025 1044848 PP_0939 Pseudomonas putida KT2440 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase NP_743100.1 1084174 D 160488 CDS NP_743101.1 26987676 1044850 1085028..1086467 1 NC_002947.3 similar to GB:M22995, GB:X12533, SP:P10113, PID:35859, PID:412180, and PID:511856; identified by sequence similarity; tldD protein 1086467 tldD 1044850 tldD Pseudomonas putida KT2440 tldD protein NP_743101.1 1085028 D 160488 CDS NP_743102.1 26987677 1044851 complement(1086525..1087046) 1 NC_002947.3 similar to GP:9950710; identified by sequence similarity; hypothetical protein 1087046 1044851 PP_0941 Pseudomonas putida KT2440 hypothetical protein NP_743102.1 1086525 R 160488 CDS NP_743103.1 26987678 1044852 1087144..1088502 1 NC_002947.3 similar to GB:V00566, GB:J00299, GB:M29386, GB:D00411, SP:P01236, GB:U75583, PID:1620399, PID:1658518, PID:190354, PID:190356, PID:220018, PID:34211, PID:531101, and PID:531103; identified by sequence similarity; pmbA protein 1088502 pmbA 1044852 pmbA Pseudomonas putida KT2440 pmbA protein NP_743103.1 1087144 D 160488 CDS NP_743104.1 26987679 1044854 1088756..1089148 1 NC_002947.3 similar to GB:X78425, and PID:467806; identified by sequence similarity; hypothetical protein 1089148 fagA 1044854 fagA Pseudomonas putida KT2440 hypothetical protein NP_743104.1 1088756 D 160488 CDS NP_743105.1 26987680 1044855 1089138..1090517 1 NC_002947.3 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1090517 fumC 1044855 fumC Pseudomonas putida KT2440 fumarate hydratase NP_743105.1 1089138 D 160488 CDS NP_743106.1 26987681 1044858 1090545..1091006 1 NC_002947.3 similar to GP:4704563; identified by sequence similarity; hypothetical protein 1091006 1044858 PP_0945 Pseudomonas putida KT2440 hypothetical protein NP_743106.1 1090545 D 160488 CDS NP_743107.1 26987682 1044859 1090987..1091619 1 NC_002947.3 similar to GP:4581922, SP:P28017, GB:X62377, and PID:39657; identified by sequence similarity; superoxide dismutase 1091619 sodA 1044859 sodA Pseudomonas putida KT2440 superoxide dismutase NP_743107.1 1090987 D 160488 CDS NP_743108.1 26987683 1044861 1091616..1092524 1 NC_002947.3 identified by match to PFAM protein family HMM PF03591; zinc/iron permease 1092524 1044861 PP_0947 Pseudomonas putida KT2440 zinc/iron permease NP_743108.1 1091616 D 160488 CDS NP_743109.1 26987684 1044862 complement(1092552..1092824) 1 NC_002947.3 similar to GP:4138365; identified by sequence similarity; phosphotransferase system, phosphocarrier protein HPr 1092824 ptsO 1044862 ptsO Pseudomonas putida KT2440 phosphotransferase system, phosphocarrier protein HPr NP_743109.1 1092552 R 160488 CDS NP_743110.1 26987685 1044863 complement(1092843..1093697) 1 NC_002947.3 similar to GP:4138364; identified by sequence similarity; hypothetical protein 1093697 1044863 PP_0949 Pseudomonas putida KT2440 hypothetical protein NP_743110.1 1092843 R 160488 CDS NP_743111.1 26987686 1044865 complement(1093700..1094164) 1 NC_002947.3 similar to GB:X63575, PID:2193884, GB:X06325, SP:P09002, and PID:1333690; identified by sequence similarity; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 1094164 ptsN 1044865 ptsN Pseudomonas putida KT2440 PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN NP_743111.1 1093700 R 160488 CDS NP_743112.1 26987687 1044866 complement(1094177..1094485) 1 NC_002947.3 similar to PIR:S06713, GB:L10126, GB:L31848, SP:P36896, PID:338215, PID:555934, PID:576681, PID:576682, and PID:576683; identified by sequence similarity; sigma 54 modulation protein/ribosomal protein S30EA 1094485 rpoX 1044866 rpoX Pseudomonas putida KT2440 sigma 54 modulation protein/ribosomal protein S30EA NP_743112.1 1094177 R 160488 CDS NP_743113.1 26987688 1044867 complement(1094565..1096058) 1 NC_002947.3 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 1096058 rpoN 1044867 rpoN Pseudomonas putida KT2440 RNA polymerase factor sigma-54 NP_743113.1 1094565 R 160488 CDS NP_743114.1 26987689 1044868 complement(1096234..1096959) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00968; ABC transporter ATP-binding protein 1096959 1044868 PP_0953 Pseudomonas putida KT2440 ABC transporter ATP-binding protein NP_743114.1 1096234 R 160488 CDS NP_743115.1 26987690 1044869 complement(1096960..1097484) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03968; hypothetical protein 1097484 1044869 PP_0954 Pseudomonas putida KT2440 hypothetical protein NP_743115.1 1096960 R 160488 CDS NP_743116.1 26987691 1044871 complement(1097471..1098043) 1 NC_002947.3 hypothetical protein 1098043 1044871 PP_0955 Pseudomonas putida KT2440 hypothetical protein NP_743116.1 1097471 R 160488 CDS NP_743117.1 26987692 1044872 complement(1098052..1098576) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01662; YrbI family phosphatase 1098576 1044872 PP_0956 Pseudomonas putida KT2440 YrbI family phosphatase NP_743117.1 1098052 R 160488 CDS NP_743118.1 26987693 1044873 complement(1098589..1099563) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01380; KpsF/GutQ family protein 1099563 1044873 PP_0957 Pseudomonas putida KT2440 KpsF/GutQ family protein NP_743118.1 1098589 R 160488 CDS NP_743119.1 26987694 1044874 1099812..1100621 1 NC_002947.3 similar to GP:4336798, and GP:4336798; identified by sequence similarity; toluene tolerance ABC efflux transporter ATP-binding protein 1100621 ttg2A 1044874 ttg2A Pseudomonas putida KT2440 toluene tolerance ABC efflux transporter ATP-binding protein NP_743119.1 1099812 D 160488 CDS NP_743120.1 26987695 1044875 1100618..1101418 1 NC_002947.3 similar to GP:4336799, and GP:4336799; identified by sequence similarity; hypothetical protein 1101418 ttg2B 1044875 ttg2B Pseudomonas putida KT2440 hypothetical protein NP_743120.1 1100618 D 160488 CDS NP_743121.1 26987696 1044877 1101418..1101903 1 NC_002947.3 similar to GP:4336800, and GP:4336800; identified by sequence similarity; hypothetical protein 1101903 ttg2C 1044877 ttg2C Pseudomonas putida KT2440 hypothetical protein NP_743121.1 1101418 D 160488 CDS NP_743122.1 26987697 1044880 1101913..1102560 1 NC_002947.3 similar to GP:4336801, and GP:4336801; identified by sequence similarity; toluene tolerance family protein 1102560 ttg2D 1044880 ttg2D Pseudomonas putida KT2440 toluene tolerance family protein NP_743122.1 1101913 D 160488 CDS NP_743123.1 26987698 1044881 1102557..1102859 1 NC_002947.3 similar to GP:4336802, and GP:4336802; identified by sequence similarity; toluene-tolerance protein 1102859 ttg2E 1044881 ttg2E Pseudomonas putida KT2440 toluene-tolerance protein NP_743123.1 1102557 D 160488 CDS NP_743124.1 26987699 1044882 1102977..1103216 1 NC_002947.3 similar to GP:4336803, and GP:4336803; identified by sequence similarity; BolA family protein 1103216 ttg2F 1044882 ttg2F Pseudomonas putida KT2440 BolA family protein NP_743124.1 1102977 D 160488 CDS NP_743125.1 26987700 1044883 1103240..1104505 1 NC_002947.3 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1104505 murA 1044883 murA Pseudomonas putida KT2440 UDP-N-acetylglucosamine 1-carboxyvinyltransferase NP_743125.1 1103240 D 160488 CDS NP_743126.1 26987701 1044884 1104597..1105232 1 NC_002947.3 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase 1105232 hisG 1044884 hisG Pseudomonas putida KT2440 ATP phosphoribosyltransferase NP_743126.1 1104597 D 160488 CDS NP_743127.1 26987702 1044886 1105519..1106844 1 NC_002947.3 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1106844 hisD 1044886 hisD Pseudomonas putida KT2440 histidinol dehydrogenase NP_743127.1 1105519 D 160488 CDS NP_743128.1 26987703 1044887 1106847..1107893 1 NC_002947.3 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1107893 hisC 1044887 hisC Pseudomonas putida KT2440 histidinol-phosphate aminotransferase NP_743128.1 1106847 D 160488 CDS NP_743129.1 26987704 1044888 complement(1108009..1109250) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01676; hypothetical protein 1109250 1044888 PP_0968 Pseudomonas putida KT2440 hypothetical protein NP_743129.1 1108009 R 160488 CDS NP_743130.1 26987705 1044889 1109333..1109983 1 NC_002947.3 similar to GP:2961083; identified by sequence similarity; GntR family transcriptional regulator 1109983 1044889 PP_0969 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_743130.1 1109333 D 160488 CDS NP_743131.1 26987706 1044890 1109973..1111277 1 NC_002947.3 similar to GP:2961082; identified by sequence similarity; cyanate transporter 1111277 1044890 PP_0970 Pseudomonas putida KT2440 cyanate transporter NP_743131.1 1109973 D 160488 CDS NP_743132.1 26987707 1044891 1111387..1111863 1 NC_002947.3 identified by match to PFAM protein family HMM PF02136; hypothetical protein 1111863 1044891 PP_0971 Pseudomonas putida KT2440 hypothetical protein NP_743132.1 1111387 D 160488 CDS NP_743133.1 26987708 1044892 1111880..1112197 1 NC_002947.3 similar to GB:L05096, and PID:337413; identified by sequence similarity; GIY-YIG nuclease superfamily protein 1112197 1044892 PP_0972 Pseudomonas putida KT2440 GIY-YIG nuclease superfamily protein NP_743133.1 1111880 D 160488 CDS NP_743134.1 26987709 1044893 complement(1112145..1113152) 1 NC_002947.3 similar to SP:P33920; identified by sequence similarity; nucleoid-associated protein NdpA 1113152 ndpA 1044893 ndpA Pseudomonas putida KT2440 nucleoid-associated protein NdpA NP_743134.1 1112145 R 160488 CDS NP_743135.1 26987710 1044894 1113202..1113531 1 NC_002947.3 identified by match to PFAM protein family HMM PF04067; hypothetical protein 1113531 1044894 PP_0974 Pseudomonas putida KT2440 hypothetical protein NP_743135.1 1113202 D 160488 CDS NP_743136.1 26987711 1044896 1113522..1113803 1 NC_002947.3 similar to GP:14028719; identified by sequence similarity; histone family protein DNA-binding protein 1113803 hupN 1044896 hupN Pseudomonas putida KT2440 histone family protein DNA-binding protein NP_743136.1 1113522 D 160488 CDS NP_743137.1 26987712 1044897 complement(1113851..1114804) 1 NC_002947.3 similar to SP:P75782; identified by sequence similarity; SAM-dependent methyltransferase 1114804 1044897 PP_0976 Pseudomonas putida KT2440 SAM-dependent methyltransferase NP_743137.1 1113851 R 160488 CDS NP_743138.1 26987713 1044898 complement(1114983..1117829) 1 NC_002947.3 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1117829 valS 1044898 valS Pseudomonas putida KT2440 valyl-tRNA synthetase NP_743138.1 1114983 R 160488 CDS NP_743139.1 26987714 1044899 complement(1117913..1118278) 1 NC_002947.3 hypothetical protein 1118278 1044899 PP_0978 Pseudomonas putida KT2440 hypothetical protein NP_743139.1 1117913 R 160488 CDS NP_743140.1 26987715 1044902 complement(1118284..1118712) 1 NC_002947.3 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 1118712 holC 1044902 holC Pseudomonas putida KT2440 DNA polymerase III subunit chi NP_743140.1 1118284 R 160488 CDS NP_743141.1 26987716 1044903 complement(1118763..1120256) 1 NC_002947.3 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 1120256 pepA 1044903 pepA Pseudomonas putida KT2440 leucyl aminopeptidase NP_743141.1 1118763 R 160488 CDS NP_743142.1 26987717 1044905 complement(1120241..1120432) 1 NC_002947.3 hypothetical protein 1120432 1044905 PP_0981 Pseudomonas putida KT2440 hypothetical protein NP_743142.1 1120241 R 160488 CDS NP_743143.1 26987718 1044907 1120558..1121673 1 NC_002947.3 similar to GP:9950003; identified by sequence similarity; YjgP/YjgQ family permease 1121673 1044907 PP_0982 Pseudomonas putida KT2440 YjgP/YjgQ family permease NP_743143.1 1120558 D 160488 CDS NP_743144.1 26987719 1044908 1121666..1122727 1 NC_002947.3 similar to GB:J04168, GB:M61827, SP:P16150, PID:180126, PID:307124, PID:338231, and PID:36456; identified by sequence similarity; YjgP/YjgQ family permease 1122727 1044908 PP_0983 Pseudomonas putida KT2440 YjgP/YjgQ family permease NP_743144.1 1121666 D 160488 CDS NP_743145.1 26987720 1044909 complement(1122874..1123362) 1 NC_002947.3 similar to GP:9950001; identified by sequence similarity; RDD domain-containing protein 1123362 1044909 PP_0984 Pseudomonas putida KT2440 RDD domain-containing protein NP_743145.1 1122874 R 160488 CDS NP_743146.1 26987721 1044910 complement(1123452..1123949) 1 NC_002947.3 similar to SP:P31667, PID:606346, GB:U00096, and PID:1789816; identified by sequence similarity; cold-shock domain-contain protein 1123949 1044910 PP_0985 Pseudomonas putida KT2440 cold-shock domain-contain protein NP_743146.1 1123452 R 160488 CDS NP_743147.1 26987722 1044911 complement(1124019..1125140) 1 NC_002947.3 similar to SP:O49849; identified by sequence similarity; glycine cleavage system T protein 1125140 gcvT-1 1044911 gcvT-1 Pseudomonas putida KT2440 glycine cleavage system T protein NP_743147.1 1124019 R 160488 CDS NP_743148.1 26987723 1044912 complement(1125168..1126544) 1 NC_002947.3 similar to SP:P42630; identified by sequence similarity; L-serine dehydratase 1 1126544 sda-2 1044912 sda-2 Pseudomonas putida KT2440 L-serine dehydratase 1 NP_743148.1 1125168 R 160488 CDS NP_743149.1 26987724 1044914 complement(1126693..1129548) 1 NC_002947.3 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 1129548 gcvP-1 1044914 gcvP-1 Pseudomonas putida KT2440 glycine dehydrogenase NP_743149.1 1126693 R 160488 CDS NP_743150.1 26987725 1044915 complement(1129560..1129943) 1 NC_002947.3 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 1129943 gcvH 1044915 gcvH Pseudomonas putida KT2440 glycine cleavage system protein H NP_743150.1 1129560 R 160488 CDS NP_743151.1 26987726 1044916 complement(1130247..1130633) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04173; DoxX family protein 1130633 1044916 PP_0990 Pseudomonas putida KT2440 DoxX family protein NP_743151.1 1130247 R 160488 CDS NP_743152.1 26987727 1044917 complement(1130707..1131480) 1 NC_002947.3 hypothetical protein 1131480 1044917 PP_0991 Pseudomonas putida KT2440 hypothetical protein NP_743152.1 1130707 R 160488 CDS NP_743153.1 26987728 1044919 complement(1131477..1132310) 1 NC_002947.3 hypothetical protein 1132310 1044919 PP_0992 Pseudomonas putida KT2440 hypothetical protein NP_743153.1 1131477 R 160488 CDS NP_743154.1 26987729 1044920 complement(1132327..1132614) 1 NC_002947.3 similar to GP:15140382; identified by sequence similarity; hypothetical protein 1132614 1044920 PP_0993 Pseudomonas putida KT2440 hypothetical protein NP_743154.1 1132327 R 160488 CDS NP_743155.2 161378140 1044922 1132838..1133422 1 NC_002947.3 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 1133422 1044922 PP_0994 Pseudomonas putida KT2440 RNA polymerase sigma factor NP_743155.2 1132838 D 160488 CDS NP_743156.1 26987731 1044924 1133412..1134053 1 NC_002947.3 identified by match to PFAM protein family HMM PF04066; hypothetical protein 1134053 1044924 PP_0995 Pseudomonas putida KT2440 hypothetical protein NP_743156.1 1133412 D 160488 CDS NP_743157.1 26987732 1044926 complement(1134131..1135336) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03616; sodium/glutamate symporter 1135336 gltS 1044926 gltS Pseudomonas putida KT2440 sodium/glutamate symporter NP_743157.1 1134131 R 160488 CDS NP_743158.1 26987733 1044927 complement(1135464..1136972) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00989; Fis family transcriptional regulator 1136972 1044927 PP_0997 Pseudomonas putida KT2440 Fis family transcriptional regulator NP_743158.1 1135464 R 160488 CDS NP_743159.1 26987734 1044928 complement(1137113..1137541) 1 NC_002947.3 hypothetical protein 1137541 1044928 PP_0998 Pseudomonas putida KT2440 hypothetical protein NP_743159.1 1137113 R 160488 CDS NP_743160.1 26987735 1044929 complement(1137538..1138467) 1 NC_002947.3 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 1138467 arcC 1044929 arcC Pseudomonas putida KT2440 carbamate kinase NP_743160.1 1137538 R 160488 CDS NP_743161.1 26987736 1044931 complement(1138632..1139642) 1 NC_002947.3 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase 1139642 argI 1044931 argI Pseudomonas putida KT2440 ornithine carbamoyltransferase NP_743161.1 1138632 R 160488 CDS NP_743162.1 26987737 1044932 complement(1139712..1140965) 1 NC_002947.3 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 1140965 arcA 1044932 arcA Pseudomonas putida KT2440 arginine deiminase NP_743162.1 1139712 R 160488 CDS NP_743163.1 26987738 1044933 complement(1140999..1142426) 1 NC_002947.3 similar to GB:Z21958, GB:M25668, GB:L12563, GB:U01828, SP:P11137, GB:U32995, GB:U34059, GB:U34061, GB:U34064, GB:U34065, GB:U34069, GB:U34060, GB:U34062, GB:U34063, GB:U34066, PID:1850617, PID:187381, and PID:409875; identified by sequence similarity; arginine/ornithine antiporter 1142426 arcD 1044933 arcD Pseudomonas putida KT2440 arginine/ornithine antiporter NP_743163.1 1140999 R 160488 CDS NP_743164.1 26987739 1044934 1142863..1144290 1 NC_002947.3 similar to GB:Z21958, GB:M25668, GB:L12563, GB:U01828, SP:P11137, GB:U32995, GB:U34059, GB:U34061, GB:U34064, GB:U34065, GB:U34069, GB:U34060, GB:U34062, GB:U34063, GB:U34066, PID:1850617, PID:187381, and PID:409875; identified by sequence similarity; arginine/ornithine antiporter 1144290 1044934 PP_1003 Pseudomonas putida KT2440 arginine/ornithine antiporter NP_743164.1 1142863 D 160488 CDS NP_743165.1 26987740 1044935 complement(1144270..1144683) 1 NC_002947.3 similar to GB:M15660, SP:P12256, and PID:143306; identified by sequence similarity; hypothetical protein 1144683 1044935 PP_1004 Pseudomonas putida KT2440 hypothetical protein NP_743165.1 1144270 R 160488 CDS NP_743166.1 26987741 1044938 complement(1144738..1145331) 1 NC_002947.3 similar to GP:3091146, and GP:8163798; identified by sequence similarity; heme oxygenase 1145331 hemO 1044938 hemO Pseudomonas putida KT2440 heme oxygenase NP_743166.1 1144738 R 160488 CDS NP_743167.1 26987742 1044939 complement(1145472..1147751) 1 NC_002947.3 similar to GP:4838477; identified by sequence similarity; TonB-dependent hemoglobin/transferrin/lactoferrin family receptor 1147751 1044939 PP_1006 Pseudomonas putida KT2440 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor NP_743167.1 1145472 R 160488 CDS NP_743168.1 26987743 1044940 complement(1148187..1149242) 1 NC_002947.3 FecR anti-FecI sigma factor 1149242 1044940 PP_1007 Pseudomonas putida KT2440 FecR anti-FecI sigma factor NP_743168.1 1148187 R 160488 CDS NP_743169.1 26987744 1044941 complement(1149239..1149751) 1 NC_002947.3 ECF subfamily RNA polymerase sigma factor 1149751 1044941 PP_1008 Pseudomonas putida KT2440 ECF subfamily RNA polymerase sigma factor NP_743169.1 1149239 R 160488 CDS NP_743170.1 26987745 1041585 complement(1150008..1151009) 1 NC_002947.3 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase, type I 1151009 gap-1 1041585 gap-1 Pseudomonas putida KT2440 glyceraldehyde-3-phosphate dehydrogenase, type I NP_743170.1 1150008 R 160488 CDS NP_743171.1 26987746 1044125 1151274..1153100 1 NC_002947.3 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 1153100 edd 1044125 edd Pseudomonas putida KT2440 phosphogluconate dehydratase NP_743171.1 1151274 D 160488 CDS NP_743172.1 26987747 1043976 1153097..1154056 1 NC_002947.3 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 1154056 glk 1043976 glk Pseudomonas putida KT2440 glucokinase NP_743172.1 1153097 D 160488 CDS NP_743173.1 26987748 1043979 1154135..1154860 1 NC_002947.3 similar to GB:L10328, SP:P26218, PID:290568, GB:L10328, SP:P26218, and PID:290568; identified by sequence similarity; winged helix family two component transcriptional regulator 1154860 gltR-2 1043979 gltR-2 Pseudomonas putida KT2440 winged helix family two component transcriptional regulator NP_743173.1 1154135 D 160488 CDS NP_743174.1 26987749 1043972 1154841..1156295 1 NC_002947.3 identified by match to PFAM protein family HMM PF02518; integral membrane sensor signal transduction histidine kinase 1156295 1043972 PP_1013 Pseudomonas putida KT2440 integral membrane sensor signal transduction histidine kinase NP_743174.1 1154841 D 160488 CDS NP_743175.1 26987750 1044048 1156511..1157761 1 NC_002947.3 similar to GB:M95678, SP:Q00722, PID:190040, GB:M95678, SP:Q00722, and PID:190040; identified by sequence similarity; hypothetical protein 1157761 1044048 PP_1014 Pseudomonas putida KT2440 hypothetical protein NP_743175.1 1156511 D 160488 CDS NP_743176.1 26987751 1043966 1157866..1159152 1 NC_002947.3 identified by match to PFAM protein family HMM PF01547; sugar ABC transporter substrate-binding protein 1159152 1043966 PP_1015 Pseudomonas putida KT2440 sugar ABC transporter substrate-binding protein NP_743176.1 1157866 D 160488 CDS NP_743177.1 26987752 1044004 1159286..1160194 1 NC_002947.3 similar to GP:4090539, and GP:4090539; identified by sequence similarity; ABC transporter permease 1160194 1044004 PP_1016 Pseudomonas putida KT2440 ABC transporter permease NP_743177.1 1159286 D 160488 CDS NP_743178.1 26987753 1044176 1160187..1161032 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01095; binding-protein-dependent transport system inner membrane protein 1161032 1044176 PP_1017 Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_743178.1 1160187 D 160488 CDS NP_743179.1 26987754 1044180 1161036..1162190 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01187; sugar ABC transporter ATP-binding protein 1162190 1044180 PP_1018 Pseudomonas putida KT2440 sugar ABC transporter ATP-binding protein NP_743179.1 1161036 D 160488 CDS NP_743180.1 26987755 1044055 1162231..1163574 1 NC_002947.3 similar to GB:M26683, GB:X60001, GB:S71513, GB:X14768, GB:M37719, GB:M24545, GB:M30816, GB:M31625, GB:M31626, GB:M28223, GB:M28224, GB:M28225, GB:M28226, GB:D26087, SP:P13500, GB:M26683, GB:X60001, GB:S71513, GB:X14768, GB:M37719, GB:M24545, GB:M30816, GB:M31625, GB:M31626, GB:M28223, GB:M28224, GB:M28225, GB:M28226, GB:D26087, and SP:P13500; identified by sequence similarity; porin 1163574 oprB-1 1044055 oprB-1 Pseudomonas putida KT2440 porin NP_743180.1 1162231 D 160488 CDS NP_743181.1 26987756 1044015 1163692..1164546 1 NC_002947.3 similar to GP:9949303; identified by sequence similarity; aldose 1-epimerase 1164546 1044015 PP_1020 Pseudomonas putida KT2440 aldose 1-epimerase NP_743181.1 1163692 D 160488 CDS NP_743182.2 161378139 1043998 complement(1164539..1165411) 1 NC_002947.3 Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 1165411 hexR 1043998 hexR Pseudomonas putida KT2440 DNA-binding transcriptional regulator HexR NP_743182.2 1164539 R 160488 CDS NP_743183.1 26987758 1044167 1165614..1167083 1 NC_002947.3 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1167083 zwf-1 1044167 zwf-1 Pseudomonas putida KT2440 glucose-6-phosphate 1-dehydrogenase NP_743183.1 1165614 D 160488 CDS NP_743184.1 26987759 1043987 1167055..1167783 1 NC_002947.3 catalyzes the formation of 6-phospho-D-gluconate from 6-phospho-D-glucono-1,5-lactone; 6-phosphogluconolactonase 1167783 pgl 1043987 pgl Pseudomonas putida KT2440 6-phosphogluconolactonase NP_743184.1 1167055 D 160488 CDS NP_743185.1 26987760 1044085 1167774..1168481 1 NC_002947.3 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 1168481 eda 1044085 eda Pseudomonas putida KT2440 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase NP_743185.1 1167774 D 160488 CDS NP_743186.1 26987761 1044236 complement(1168734..1170407) 1 NC_002947.3 similar to SP:P42455; identified by sequence similarity; 2-isopropylmalate synthase 1170407 leuA 1044236 leuA Pseudomonas putida KT2440 2-isopropylmalate synthase NP_743186.1 1168734 R 160488 CDS NP_743187.1 26987762 1044237 complement(1170840..1171667) 1 NC_002947.3 similar to GP:9949959; identified by sequence similarity; M24/M37 family peptidase 1171667 1044237 PP_1026 Pseudomonas putida KT2440 M24/M37 family peptidase NP_743187.1 1170840 R 160488 CDS NP_743188.1 26987763 1044154 complement(1171671..1173050) 1 NC_002947.3 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1173050 xseA 1044154 xseA Pseudomonas putida KT2440 exodeoxyribonuclease VII large subunit NP_743188.1 1171671 R 160488 CDS NP_743189.1 26987764 1044126 complement(1173145..1174023) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 1174023 1044126 PP_1028 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_743189.1 1173145 R 160488 CDS NP_743190.1 26987765 1044117 1174121..1174876 1 NC_002947.3 identified by match to PFAM protein family HMM PF01925; hypothetical protein 1174876 1044117 PP_1029 Pseudomonas putida KT2440 hypothetical protein NP_743190.1 1174121 D 160488 CDS NP_743191.1 26987766 1044216 1174924..1175481 1 NC_002947.3 similar to GP:8894736; identified by sequence similarity; hypothetical protein 1175481 1044216 PP_1030 Pseudomonas putida KT2440 hypothetical protein NP_743191.1 1174924 D 160488 CDS NP_743192.1 26987767 1044148 1175568..1177037 1 NC_002947.3 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1177037 guaB 1044148 guaB Pseudomonas putida KT2440 inosine 5'-monophosphate dehydrogenase NP_743192.1 1175568 D 160488 CDS NP_743193.1 26987768 1044098 1177116..1178693 1 NC_002947.3 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1178693 guaA 1044098 guaA Pseudomonas putida KT2440 GMP synthase NP_743193.1 1177116 D 160488 CDS NP_743194.1 26987769 1044328 complement(1178787..1180775) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00884; sulfatase 1180775 1044328 PP_1033 Pseudomonas putida KT2440 sulfatase NP_743194.1 1178787 R 160488 CDS NP_743195.1 26987770 1044226 1180946..1182352 1 NC_002947.3 similar to GP:4580028, and GP:4580028; identified by sequence similarity; multicopper oxidase 1182352 cumA 1044226 cumA Pseudomonas putida KT2440 multicopper oxidase NP_743195.1 1180946 D 160488 CDS NP_743196.1 26987771 1044218 1182394..1182831 1 NC_002947.3 similar to GP:4580029, and GP:4580029; identified by sequence similarity; cumB protein 1182831 cumB 1044218 cumB Pseudomonas putida KT2440 cumB protein NP_743196.1 1182394 D 160488 CDS NP_743197.1 26987772 1044173 complement(1182925..1184274) 1 NC_002947.3 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; transglycosylase 1184274 1044173 PP_1036 Pseudomonas putida KT2440 transglycosylase NP_743197.1 1182925 R 160488 CDS NP_743198.1 26987773 1044327 1184794..1188693 1 NC_002947.3 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1188693 purL 1044327 purL Pseudomonas putida KT2440 phosphoribosylformylglycinamidine synthase NP_743198.1 1184794 D 160488 CDS NP_743199.1 26987774 1044313 1188697..1189008 1 NC_002947.3 similar to GP:9949932; identified by sequence similarity; hypothetical protein 1189008 1044313 PP_1038 Pseudomonas putida KT2440 hypothetical protein NP_743199.1 1188697 D 160488 CDS NP_743200.1 26987775 1044232 complement(1189050..1189811) 1 NC_002947.3 similar to GB:M95623, GB:X04217, GB:X04808, GB:D10608, GB:D12722, SP:P08397, PID:292385, PID:292386, PID:35305, PID:35307, and PID:35309; identified by sequence similarity; Sec-independent protein translocase subunit TatC 1189811 tatC-1 1044232 tatC-1 Pseudomonas putida KT2440 Sec-independent protein translocase subunit TatC NP_743200.1 1189050 R 160488 CDS NP_743201.1 26987776 1044161 complement(1189808..1190098) 1 NC_002947.3 similar to GB:M95623, GB:X04217, GB:X04808, GB:D10608, GB:D12722, SP:P08397, PID:292385, PID:292386, PID:35305, PID:35307, and PID:35309; identified by sequence similarity; twin-arginine translocation protein subunit TatB 1190098 1044161 PP_1040 Pseudomonas putida KT2440 twin-arginine translocation protein subunit TatB NP_743201.1 1189808 R 160488 CDS NP_743202.1 26987777 1044379 complement(1190098..1190331) 1 NC_002947.3 similar to GB:M95623, GB:X04217, GB:X04808, GB:D10608, GB:D12722, SP:P08397, PID:292385, PID:292386, PID:35305, PID:35307, and PID:35309; identified by sequence similarity; twin-arginine translocation protein TatA 1190331 tatA-1 1044379 tatA-1 Pseudomonas putida KT2440 twin-arginine translocation protein TatA NP_743202.1 1190098 R 160488 CDS NP_743203.1 26987778 1044397 1190477..1191442 1 NC_002947.3 similar to GP:3978485, GB:L20861, SP:P41221, and PID:348918; identified by sequence similarity; general secretion pathway protein K 1191442 xcpX 1044397 xcpX Pseudomonas putida KT2440 general secretion pathway protein K NP_743203.1 1190477 D 160488 CDS NP_743204.1 26987779 1044233 complement(1191572..1193647) 1 NC_002947.3 similar to GB:X13589, GB:Y07508, GB:M22246, GB:S85356, GB:M74714, GB:J04127, GB:M30795, GB:M30796, GB:M30797, GB:M30798, GB:M30799, GB:M30800, GB:M30801, GB:M30802, GB:M30803, GB:M30804, GB:M18856, GB:M28420, GB:S58866, GB:S85075, GB:S52793, GB:M32245, GB:X55983, GB:D14473, GB:S67206, GB:L21982, GB:S52789, and SP:P11511; identified by sequence similarity; hypothetical protein 1193647 uxpB 1044233 uxpB Pseudomonas putida KT2440 hypothetical protein NP_743204.1 1191572 R 160488 CDS NP_743205.1 26987780 1044440 1193860..1195512 1 NC_002947.3 lipoprotein UxpA 1195512 uxpA 1044440 uxpA Pseudomonas putida KT2440 lipoprotein UxpA NP_743205.1 1193860 D 160488 CDS NP_743206.1 26987781 1044337 1195509..1195934 1 NC_002947.3 similar to GB:M32793, SP:P15977, PID:146715, PID:606351, GB:U00096, PID:1789821, GB:M32793, SP:P15977, PID:146715, PID:606351, GB:U00096, and PID:1789821; identified by sequence similarity; type II secretion pathway protein XcpP 1195934 xcpP 1044337 xcpP Pseudomonas putida KT2440 type II secretion pathway protein XcpP NP_743206.1 1195509 D 160488 CDS NP_743207.1 26987782 1044347 1195938..1197692 1 NC_002947.3 similar to GB:M62400, SP:P24046, PID:182911, GB:M62400, SP:P24046, and PID:182911; identified by sequence similarity; general secretion pathway protein D 1197692 xcpQ 1044347 xcpQ Pseudomonas putida KT2440 general secretion pathway protein D NP_743207.1 1195938 D 160488 CDS NP_743208.1 26987783 1044282 1197689..1199140 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01420; type II secretion system protein E 1199140 xcpR 1044282 xcpR Pseudomonas putida KT2440 type II secretion system protein E NP_743208.1 1197689 D 160488 CDS NP_743209.1 26987784 1044322 1199144..1200346 1 NC_002947.3 similar to GB:M61856, GB:X56452, GB:L16869, GB:L16870, GB:L16871, GB:L16872, GB:L16873, GB:L16874, GB:L16875, GB:L16876, SP:P33260, PID:181300, PID:306327, PID:433672, GB:M61856, GB:X56452, GB:L16869, GB:L16870, GB:L16871, GB:L16872, GB:L16873, GB:L16874, GB:L16875, GB:L16876, SP:P33260, PID:181300, PID:306327, and PID:433672; identified by sequence similarity; general secretion pathway protein F 1200346 xcpS-1 1044322 xcpS-1 Pseudomonas putida KT2440 general secretion pathway protein F NP_743209.1 1199144 D 160488 CDS NP_743210.1 26987785 1044442 1200343..1200798 1 NC_002947.3 similar to GP:3297910, and GP:3297910; identified by sequence similarity; general secretion pathway protein G 1200798 xcpT-1 1044442 xcpT-1 Pseudomonas putida KT2440 general secretion pathway protein G NP_743210.1 1200343 D 160488 CDS NP_743211.1 26987786 1044522 1200802..1201233 1 NC_002947.3 similar to GP:3293033, and GP:3293033; identified by sequence similarity; general secretion pathway protein H 1201233 xcpU 1044522 xcpU Pseudomonas putida KT2440 general secretion pathway protein H NP_743211.1 1200802 D 160488 CDS NP_743212.1 26987787 1044558 1201191..1201598 1 NC_002947.3 similar to GP:3293034, and GP:3293034; identified by sequence similarity; type II secretion system protein I/J 1201598 xcpV 1044558 xcpV Pseudomonas putida KT2440 type II secretion system protein I/J NP_743212.1 1201191 D 160488 CDS NP_743213.1 26987788 1044623 1201595..1202185 1 NC_002947.3 similar to GP:3293035, and GP:3293035; identified by sequence similarity; type II secretion pathway protein XcpW 1202185 xcpW 1044623 xcpW Pseudomonas putida KT2440 type II secretion pathway protein XcpW NP_743213.1 1201595 D 160488 CDS NP_743214.1 26987789 1044476 1202170..1203258 1 NC_002947.3 similar to GP:3293036; identified by sequence similarity; general secretion pathway protein L 1203258 xcpY 1044476 xcpY Pseudomonas putida KT2440 general secretion pathway protein L NP_743214.1 1202170 D 160488 CDS NP_743215.1 26987790 1044310 1203255..1203641 1 NC_002947.3 similar to GP:3293037, and GP:3293037; identified by sequence similarity; type II secretion pathway protein XcpZ 1203641 xcpZ 1044310 xcpZ Pseudomonas putida KT2440 type II secretion pathway protein XcpZ NP_743215.1 1203255 D 160488 CDS NP_743216.1 26987791 1044362 1203656..1204300 1 NC_002947.3 similar to GP:3293038, and GP:3293038; identified by sequence similarity; type II secretion pathway protein GspN 1204300 gspN 1044362 gspN Pseudomonas putida KT2440 type II secretion pathway protein GspN NP_743216.1 1203656 D 160488 CDS NP_743217.1 26987792 1044641 complement(1204460..1205221) 1 NC_002947.3 similar to GP:11127894, GB:D10483, SP:P08203, GB:M15263, GB:M62646, GB:X56048, PID:145306, PID:147317, PID:216481, PID:40939, GB:U00096, and PID:1786247; identified by sequence similarity; iron-chelator utilization protein 1205221 1044641 PP_1056 Pseudomonas putida KT2440 iron-chelator utilization protein NP_743217.1 1204460 R 160488 CDS NP_743218.1 26987793 1044668 complement(1205214..1205759) 1 NC_002947.3 similar to GP:9968714, GB:K01316, SP:P01857, SP:P01859, SP:P01860, SP:P01861, PID:184759, PID:185291, PID:2414492, PID:2414494, PID:567112, PID:577056, and PID:683576; identified by sequence similarity; PadR family transcriptional regulator 1205759 1044668 PP_1057 Pseudomonas putida KT2440 PadR family transcriptional regulator NP_743218.1 1205214 R 160488 CDS NP_743219.1 26987794 1044673 complement(1205849..1208998) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00912; hypothetical protein 1208998 1044673 PP_1058 Pseudomonas putida KT2440 hypothetical protein NP_743219.1 1205849 R 160488 CDS NP_743220.1 26987795 1044674 1209390..1210808 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00913; amino acid permease 1210808 1044674 PP_1059 Pseudomonas putida KT2440 amino acid permease NP_743220.1 1209390 D 160488 CDS NP_743221.1 26987796 1044657 complement(1210845..1212464) 1 NC_002947.3 similar to SP:P35646, GB:Z12609, and PID:41331; identified by sequence similarity; glutamate synthase, large subunit 1212464 1044657 PP_1060 Pseudomonas putida KT2440 glutamate synthase, large subunit NP_743221.1 1210845 R 160488 CDS NP_743222.1 26987797 1044425 complement(1212652..1216956) 1 NC_002947.3 similar to GB:M76979, GB:M90439, GB:U29953, SP:P36955, PID:1144299, and PID:1732049; identified by sequence similarity; DEAD/DEAH box helicase 1216956 1044425 PP_1061 Pseudomonas putida KT2440 DEAD/DEAH box helicase NP_743222.1 1212652 R 160488 CDS NP_743223.1 26987798 1044513 1217093..1217506 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00586; NUDIX hydrolase 1217506 1044513 PP_1062 Pseudomonas putida KT2440 NUDIX hydrolase NP_743223.1 1217093 D 160488 CDS NP_743224.1 26987799 1044499 complement(1217490..1218407) 1 NC_002947.3 similar to GB:X59618, SP:P31350, and PID:36155; identified by sequence similarity; transcriptional activator MetR 1218407 metR-1 1044499 metR-1 Pseudomonas putida KT2440 transcriptional activator MetR NP_743224.1 1217490 R 160488 CDS NP_743225.1 26987800 1044709 1218462..1219598 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01738; alpha/beta hydrolase 1219598 1044709 PP_1064 Pseudomonas putida KT2440 alpha/beta hydrolase NP_743225.1 1218462 D 160488 CDS NP_743226.1 26987801 1044714 complement(1219616..1219951) 1 NC_002947.3 GlpM family protein 1219951 1044714 PP_1065 Pseudomonas putida KT2440 GlpM family protein NP_743226.1 1219616 R 160488 CDS NP_743227.1 26987802 1044699 complement(1219975..1221303) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00072; Fis family transcriptional regulator 1221303 1044699 PP_1066 Pseudomonas putida KT2440 Fis family transcriptional regulator NP_743227.1 1219975 R 160488 CDS NP_743228.1 26987803 1044716 complement(1221300..1223207) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02518; integral membrane sensor signal transduction histidine kinase 1223207 1044716 PP_1067 Pseudomonas putida KT2440 integral membrane sensor signal transduction histidine kinase NP_743228.1 1221300 R 160488 CDS NP_743229.1 26987804 1044717 complement(1223273..1224043) 1 NC_002947.3 similar to GB:S67291, GB:S67292, GB:S67294, GB:X51943, GB:M13361, GB:M60515, GB:M60516, GB:M60518, GB:M60519, GB:M60520, GB:M60521, GB:X59065, GB:X65778, GB:X59612, SP:P05230, PID:181942, PID:182559, PID:292022, PID:292027, PID:32436, PID:386768, PID:396164, PID:396166, PID:553170, and PID:553171; identified by sequence similarity; amino acid ABC transporter ATP-binding protein 1224043 1044717 PP_1068 Pseudomonas putida KT2440 amino acid ABC transporter ATP-binding protein NP_743229.1 1223273 R 160488 CDS NP_743230.1 26987805 1044678 complement(1224004..1224675) 1 NC_002947.3 similar to GB:S67291, GB:S67292, GB:S67294, GB:X51943, GB:M13361, GB:M60515, GB:M60516, GB:M60518, GB:M60519, GB:M60520, GB:M60521, GB:X59065, GB:X65778, GB:X59612, SP:P05230, PID:181942, PID:182559, PID:292022, PID:292027, PID:32436, PID:386768, PID:396164, PID:396166, PID:553170, and PID:553171; identified by sequence similarity; polar amino acid ABC transporter inner membrane subunit 1224675 1044678 PP_1069 Pseudomonas putida KT2440 polar amino acid ABC transporter inner membrane subunit NP_743230.1 1224004 R 160488 CDS NP_743231.1 26987806 1044967 complement(1224676..1225422) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01726; polar amino acid ABC transporter inner membrane subunit 1225422 1044967 PP_1070 Pseudomonas putida KT2440 polar amino acid ABC transporter inner membrane subunit NP_743231.1 1224676 R 160488 CDS NP_743232.1 26987807 1044664 complement(1225568..1226488) 1 NC_002947.3 similar to GB:S67291, GB:S67292, GB:S67294, GB:X51943, GB:M13361, GB:M60515, GB:M60516, GB:M60518, GB:M60519, GB:M60520, GB:M60521, GB:X59065, GB:X65778, GB:X59612, SP:P05230, PID:181942, PID:182559, PID:292022, PID:292027, PID:32436, PID:386768, PID:396164, PID:396166, PID:553170, and PID:553171; identified by sequence similarity; amino acid ABC transporter substrate-binding protein 1226488 1044664 PP_1071 Pseudomonas putida KT2440 amino acid ABC transporter substrate-binding protein NP_743232.1 1225568 R 160488 CDS NP_743233.1 26987808 1044672 1226819..1231138 1 NC_002947.3 identified by match to PFAM protein family HMM PF00560; hypothetical protein 1231138 1044672 PP_1072 Pseudomonas putida KT2440 hypothetical protein NP_743233.1 1226819 D 160488 CDS NP_743234.1 26987809 1045009 complement(1231166..1232710) 1 NC_002947.3 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 1232710 glpD 1045009 glpD Pseudomonas putida KT2440 glycerol-3-phosphate dehydrogenase NP_743234.1 1231166 R 160488 CDS NP_743235.1 26987810 1044730 complement(1232927..1233682) 1 NC_002947.3 similar to GP:3358093, SP:P33178, SP:P00457, and PID:142057; identified by sequence similarity; DeoR family transcriptional regulator 1233682 glpR 1044730 glpR Pseudomonas putida KT2440 DeoR family transcriptional regulator NP_743235.1 1232927 R 160488 CDS NP_743236.1 26987811 1044814 complement(1233784..1235283) 1 NC_002947.3 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 1235283 glpK 1044814 glpK Pseudomonas putida KT2440 glycerol kinase NP_743236.1 1233784 R 160488 CDS NP_743237.1 26987812 1044845 complement(1235335..1236186) 1 NC_002947.3 similar to GP:3299802, and GP:3299802; identified by sequence similarity; MIP family channel protein 1236186 glpF 1044845 glpF Pseudomonas putida KT2440 MIP family channel protein NP_743237.1 1235335 R 160488 CDS NP_743238.1 26987813 1044735 1236489..1236959 1 NC_002947.3 similar to GB:U14003, SP:P09743, GB:M60917, PID:147309, PID:537224, GB:U00096, and PID:1790844; identified by sequence similarity; ybaK/ebsC protein 1236959 1044735 PP_1077 Pseudomonas putida KT2440 ybaK/ebsC protein NP_743238.1 1236489 D 160488 CDS NP_743239.1 26987814 1045042 complement(1236997..1238106) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00968; ABC transporter ATP-binding protein 1238106 1045042 PP_1078 Pseudomonas putida KT2440 ABC transporter ATP-binding protein NP_743239.1 1236997 R 160488 CDS NP_743240.1 26987815 1044722 complement(1238103..1239023) 1 NC_002947.3 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 1239023 argF 1044722 argF Pseudomonas putida KT2440 ornithine carbamoyltransferase NP_743240.1 1238103 R 160488 CDS NP_743241.1 26987816 1044693 1239398..1241506 1 NC_002947.3 identified by match to PFAM protein family HMM PF00384; molydopterin dinucleotide-binding region 1241506 1044693 PP_1080 Pseudomonas putida KT2440 molydopterin dinucleotide-binding region NP_743241.1 1239398 D 160488 CDS NP_743242.1 26987817 1045132 1241598..1241933 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00365; glutaredoxin-like protein 1241933 1045132 PP_1081 Pseudomonas putida KT2440 glutaredoxin-like protein NP_743242.1 1241598 D 160488 CDS NP_743243.1 26987818 1045026 complement(1241991..1242464) 1 NC_002947.3 similar to GB:X69292, GB:S67240, SP:P35749, PID:2104553, PID:2352947, and PID:36507; identified by sequence similarity; bacterioferritin 1242464 bfr 1045026 bfr Pseudomonas putida KT2440 bacterioferritin NP_743243.1 1241991 R 160488 CDS NP_743244.1 26987819 1045102 complement(1242664..1242882) 1 NC_002947.3 similar to GB:S45627, GB:S45629, GB:S45636, GB:S45637, GB:S45639, GB:S45640, GB:S45635, GB:M16594, GB:X65726, GB:X65727, GB:X65728, GB:X65729, GB:X65730, GB:X65731, GB:X65732, SP:P08263, SP:P09210, PID:306811, PID:825605, and PID:825606; identified by sequence similarity; BFD (2Fe-2S)-binding domain-containing protein 1242882 1045102 PP_1083 Pseudomonas putida KT2440 BFD (2Fe-2S)-binding domain-containing protein NP_743244.1 1242664 R 160488 CDS NP_743245.1 26987820 1045103 1243107..1243709 1 NC_002947.3 identified by match to PFAM protein family HMM PF00578; anti-oxidant AhpCTSA family protein 1243709 1045103 PP_1084 Pseudomonas putida KT2440 anti-oxidant AhpCTSA family protein NP_743245.1 1243107 D 160488 CDS NP_743246.1 26987821 1045053 complement(1243808..1244419) 1 NC_002947.3 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 1244419 rnt 1045053 rnt Pseudomonas putida KT2440 ribonuclease T NP_743246.1 1243808 R 160488 CDS NP_743247.1 26987822 1045131 complement(1244479..1245525) 1 NC_002947.3 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1245525 pyrC 1045131 pyrC Pseudomonas putida KT2440 dihydroorotase NP_743247.1 1244479 R 160488 CDS NP_743248.1 26987823 1045169 1245644..1246597 1 NC_002947.3 identified by match to PFAM protein family HMM PF00691; OmpA family outer membrane protein 1246597 1045169 PP_1087 Pseudomonas putida KT2440 OmpA family outer membrane protein NP_743248.1 1245644 D 160488 CDS NP_743249.1 26987824 1045159 1246968..1248185 1 NC_002947.3 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 1248185 argG 1045159 argG Pseudomonas putida KT2440 argininosuccinate synthase NP_743249.1 1246968 D 160488 CDS NP_743250.1 26987825 1045206 complement(1248253..1248735) 1 NC_002947.3 hypothetical protein 1248735 1045206 PP_1089 Pseudomonas putida KT2440 hypothetical protein NP_743250.1 1248253 R 160488 CDS NP_743251.1 26987826 1045150 1249102..1249725 1 NC_002947.3 similar to GB:M28825, GB:M22080, GB:M22163, GB:M22164, GB:M22165, GB:M22166, GB:M22167, GB:X79309, GB:X79308, GB:M27735, GB:M14663, SP:P06126, PID:180046, PID:530884, GB:M28825, GB:M22080, GB:M22163, GB:M22164, GB:M22165, GB:M22166, GB:M22167, GB:X79309, GB:X79308, GB:M27735, GB:M14663, SP:P06126, PID:180046, and PID:530884; identified by sequence similarity; LuxR family transcriptional regulator 1249725 1045150 PP_1090 Pseudomonas putida KT2440 LuxR family transcriptional regulator NP_743251.1 1249102 D 160488 CDS NP_743252.1 26987827 1045207 complement(1249796..1249972) 1 NC_002947.3 similar to GP:9949642; identified by sequence similarity; hypothetical protein 1249972 1045207 PP_1091 Pseudomonas putida KT2440 hypothetical protein NP_743252.1 1249796 R 160488 CDS NP_743253.1 26987828 1045203 complement(1250077..1250715) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00730; endonuclease III 1250715 nth 1045203 nth Pseudomonas putida KT2440 endonuclease III NP_743253.1 1250077 R 160488 CDS NP_743254.1 26987829 1045205 complement(1250720..1251268) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02508; hypothetical protein 1251268 1045205 PP_1093 Pseudomonas putida KT2440 hypothetical protein NP_743254.1 1250720 R 160488 CDS NP_743255.1 26987830 1045210 complement(1251237..1251839) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04205; RnfABCDGE type electron transport complex subunit G 1251839 1045210 PP_1094 Pseudomonas putida KT2440 RnfABCDGE type electron transport complex subunit G NP_743255.1 1251237 R 160488 CDS NP_743256.1 26987831 1045209 complement(1251836..1252807) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03116; RnfABCDGE type electron transport complex subunit D 1252807 1045209 PP_1095 Pseudomonas putida KT2440 RnfABCDGE type electron transport complex subunit D NP_743256.1 1251836 R 160488 CDS NP_743257.1 26987832 1045208 complement(1252804..1253352) 1 NC_002947.3 similar to GB:X54107, and PID:48759; identified by sequence similarity; hypothetical protein 1253352 1045208 PP_1096 Pseudomonas putida KT2440 hypothetical protein NP_743257.1 1252804 R 160488 CDS NP_743258.1 26987833 1045214 complement(1253459..1255498) 1 NC_002947.3 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1255498 metG 1045214 metG Pseudomonas putida KT2440 methionyl-tRNA synthetase NP_743258.1 1253459 R 160488 CDS NP_743259.1 26987834 1045239 1255657..1256751 1 NC_002947.3 similar to SP:P45135; identified by sequence similarity; ATP-binding Mrp/Nbp35 family protein 1256751 1045239 PP_1098 Pseudomonas putida KT2440 ATP-binding Mrp/Nbp35 family protein NP_743259.1 1255657 D 160488 CDS NP_743260.1 26987835 1045218 complement(1256919..1257128) 1 NC_002947.3 similar to GP:13625473, GB:M84993, SP:P26462, GB:X52093, and PID:154021; identified by sequence similarity; cold-shock domain-contain protein 1257128 1045218 PP_1099 Pseudomonas putida KT2440 cold-shock domain-contain protein NP_743260.1 1256919 R 160488 CDS NP_743261.1 26987836 1045219 1257456..1258022 1 NC_002947.3 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1258022 dcd 1045219 dcd Pseudomonas putida KT2440 deoxycytidine triphosphate deaminase NP_743261.1 1257456 D 160488 CDS NP_743262.1 26987837 1045215 1258084..1258344 1 NC_002947.3 hypothetical protein 1258344 1045215 PP_1101 Pseudomonas putida KT2440 hypothetical protein NP_743262.1 1258084 D 160488 CDS NP_743263.1 26987838 1045231 complement(1258351..1259001) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00149; hypothetical protein 1259001 1045231 PP_1102 Pseudomonas putida KT2440 hypothetical protein NP_743263.1 1258351 R 160488 CDS NP_743264.1 26987839 1045221 complement(1258998..1261448) 1 NC_002947.3 similar to GB:X56013, and PID:42450; identified by sequence similarity; DEAD/DEAH box helicase 1261448 1045221 PP_1103 Pseudomonas putida KT2440 DEAD/DEAH box helicase NP_743264.1 1258998 R 160488 CDS NP_743265.1 26987840 1045220 complement(1261517..1262632) 1 NC_002947.3 succinylglutamate desuccinylase/aspartoacylase 1262632 1045220 PP_1104 Pseudomonas putida KT2440 succinylglutamate desuccinylase/aspartoacylase NP_743265.1 1261517 R 160488 CDS NP_743266.1 26987841 1045250 complement(1262746..1264404) 1 NC_002947.3 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase 1264404 1045250 PP_1105 Pseudomonas putida KT2440 ATP-dependent DNA ligase NP_743266.1 1262746 R 160488 CDS NP_743267.1 26987842 1045251 complement(1264401..1265417) 1 NC_002947.3 similar to GP:15075932; identified by sequence similarity; RNA processing exonuclease 1265417 1045251 PP_1106 Pseudomonas putida KT2440 RNA processing exonuclease NP_743267.1 1264401 R 160488 CDS NP_743268.1 26987843 1045232 1265456..1265566 1 NC_002947.3 hypothetical protein 1265566 1045232 PP_1107 Pseudomonas putida KT2440 hypothetical protein NP_743268.1 1265456 D 160488 CDS NP_743269.1 26987844 1045236 complement(1265544..1267985) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01804; acylase 1267985 1045236 PP_1108 Pseudomonas putida KT2440 acylase NP_743269.1 1265544 R 160488 CDS NP_743270.1 26987845 1045226 complement(1268089..1269429) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00155; GntR family transcriptional regulator 1269429 1045226 PP_1109 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_743270.1 1268089 R 160488 CDS NP_743271.1 26987846 1045245 1269764..1270315 1 NC_002947.3 identified by match to PFAM protein family HMM PF00132; serine O-acetyltransferase 1270315 1045245 PP_1110 Pseudomonas putida KT2440 serine O-acetyltransferase NP_743271.1 1269764 D 160488 CDS NP_743272.1 26987847 1045223 1270312..1271100 1 NC_002947.3 identified by match to PFAM protein family HMM PF01411; synthetase 1271100 1045223 PP_1111 Pseudomonas putida KT2440 synthetase NP_743272.1 1270312 D 160488 CDS NP_743273.1 26987848 1045233 1271097..1272308 1 NC_002947.3 similar to GP:9947836; identified by sequence similarity; major facilitator superfamily protein 1272308 1045233 PP_1112 Pseudomonas putida KT2440 major facilitator superfamily protein NP_743273.1 1271097 D 160488 CDS NP_743274.1 26987849 1045227 1272305..1273207 1 NC_002947.3 similar to GP:9858119; identified by sequence similarity; pyridoxal-phosphate dependent enzyme family protein 1273207 1045227 PP_1113 Pseudomonas putida KT2440 pyridoxal-phosphate dependent enzyme family protein NP_743274.1 1272305 D 160488 CDS NP_743275.1 26987850 1045238 complement(1273375..1273572) 1 NC_002947.3 similar to GP:9946947; identified by sequence similarity; SEC-C domain-containing protein 1273572 1045238 PP_1114 Pseudomonas putida KT2440 SEC-C domain-containing protein NP_743275.1 1273375 R 160488 CDS NP_743276.1 26987851 1045240 complement(1273580..1274083) 1 NC_002947.3 lipoprotein 1274083 1045240 PP_1115 Pseudomonas putida KT2440 lipoprotein NP_743276.1 1273580 R 160488 CDS NP_743277.1 26987852 1045248 complement(1276657..1277367) 1 NC_002947.3 similar to GB:M14107, GB:M10133, SP:P08716, SP:P10089, GB:M81823, PID:146380, PID:146383, and PID:150683; identified by sequence similarity; resolvase site-specific recombinase 1277367 1045248 PP_1116 Pseudomonas putida KT2440 resolvase site-specific recombinase NP_743277.1 1276657 R 160488 CDS NP_743278.1 26987853 1045247 complement(1278734..1279993) 1 NC_002947.3 hypothetical protein 1279993 1045247 PP_1117 Pseudomonas putida KT2440 hypothetical protein NP_743278.1 1278734 R 160488 CDS NP_743279.1 26987854 1045244 complement(1281215..1282906) 1 NC_002947.3 similar to SP:Q01624, and PID:46680; identified by sequence similarity; recombinase-like protein 1282906 1045244 PP_1118 Pseudomonas putida KT2440 recombinase-like protein NP_743279.1 1281215 R 160488 CDS NP_743280.1 26987855 1045234 complement(1282925..1283407) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02810; hypothetical protein 1283407 1045234 PP_1119 Pseudomonas putida KT2440 hypothetical protein NP_743280.1 1282925 R 160488 CDS NP_743281.1 26987856 1045256 complement(1283407..1283901) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00126; hypothetical protein 1283901 1045256 PP_1120 Pseudomonas putida KT2440 hypothetical protein NP_743281.1 1283407 R 160488 CDS NP_743282.1 26987857 1045249 1284061..1284753 1 NC_002947.3 identified by match to PFAM protein family HMM PF00691; OmpA/MotB domain-containing protein 1284753 1045249 PP_1121 Pseudomonas putida KT2440 OmpA/MotB domain-containing protein NP_743282.1 1284061 D 160488 CDS NP_743283.1 26987858 1045258 1284768..1285562 1 NC_002947.3 identified by match to PFAM protein family HMM PF00691; OmpA/MotB domain-containing protein 1285562 1045258 PP_1122 Pseudomonas putida KT2440 OmpA/MotB domain-containing protein NP_743283.1 1284768 D 160488 CDS NP_743284.1 26987859 1045253 1285661..1285936 1 NC_002947.3 hypothetical protein 1285936 1045253 PP_1123 Pseudomonas putida KT2440 hypothetical protein NP_743284.1 1285661 D 160488 CDS NP_743285.1 26987860 1045261 complement(1286053..1286517) 1 NC_002947.3 hypothetical protein 1286517 1045261 PP_1124 Pseudomonas putida KT2440 hypothetical protein NP_743285.1 1286053 R 160488 CDS NP_743286.1 26987861 1045260 1286616..1288760 1 NC_002947.3 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 1288760 dinG 1045260 dinG Pseudomonas putida KT2440 ATP-dependent DNA helicase DinG NP_743286.1 1286616 D 160488 CDS NP_743287.1 26987862 1045259 1288726..1291074 1 NC_002947.3 similar to GB:X00734, SP:P04350, SP:P05217, SP:P07437, PID:35959, PID:496887, and PID:897763; identified by sequence similarity; Beta-agarase 1291074 1045259 PP_1126 Pseudomonas putida KT2440 Beta-agarase NP_743287.1 1288726 D 160488 CDS NP_743288.1 26987863 1045267 1291208..1292353 1 NC_002947.3 similar to GB:X07881, SP:P02812, SP:P04281, PID:296669, GB:U09060, GB:U09061, PID:483862, PID:483864, PID:520411, PID:553383, PID:553384, PID:563395, PID:563399, PID:563411, PID:563415, PID:563424, PID:563426, PID:563428, PID:563430, PID:563434, PID:563446, PID:563466, PID:563475, PID:563479, PID:563483, PID:563485, PID:609461, PID:836630, PID:860982, PID:940525, PID:951285, and PID:976302; identified by sequence similarity; beta-lactamase 1292353 estC 1045267 estC Pseudomonas putida KT2440 beta-lactamase NP_743288.1 1291208 D 160488 CDS NP_743289.1 26987864 1045352 1292396..1293430 1 NC_002947.3 identified by match to PFAM protein family HMM PF00691; OmpA/MotB domain-containing protein 1293430 1045352 PP_1128 Pseudomonas putida KT2440 OmpA/MotB domain-containing protein NP_743289.1 1292396 D 160488 CDS NP_743290.1 26987865 1045279 1293450..1294097 1 NC_002947.3 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1294097 pdxH 1045279 pdxH Pseudomonas putida KT2440 pyridoxamine 5'-phosphate oxidase NP_743290.1 1293450 D 160488 CDS NP_743291.1 26987866 1045293 complement(1294137..1294442) 1 NC_002947.3 hypothetical protein 1294442 1045293 PP_1130 Pseudomonas putida KT2440 hypothetical protein NP_743291.1 1294137 R 160488 CDS NP_743292.1 26987867 1045442 1294518..1294982 1 NC_002947.3 similar to GP:5758657; identified by sequence similarity; hypothetical protein 1294982 1045442 PP_1131 Pseudomonas putida KT2440 hypothetical protein NP_743292.1 1294518 D 160488 CDS NP_743293.1 26987868 1045300 complement(1295052..1296245) 1 NC_002947.3 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 1296245 nhaA 1045300 nhaA Pseudomonas putida KT2440 pH-dependent sodium/proton antiporter NP_743293.1 1295052 R 160488 CDS NP_743294.1 26987869 1045440 1296811..1298139 1 NC_002947.3 similar to GP:6723233; identified by sequence similarity; ISPpu9, transposase 1298139 1045440 PP_1133 Pseudomonas putida KT2440 ISPpu9, transposase NP_743294.1 1296811 D 160488 CDS NP_743295.1 26987870 1045433 complement(1298568..1300175) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00136; FAD dependent oxidoreductase 1300175 1045433 PP_1134 Pseudomonas putida KT2440 FAD dependent oxidoreductase NP_743295.1 1298568 R 160488 CDS NP_743296.1 26987871 1045308 complement(1300279..1301019) 1 NC_002947.3 hypothetical protein 1301019 1045308 PP_1135 Pseudomonas putida KT2440 hypothetical protein NP_743296.1 1300279 R 160488 CDS NP_743297.1 26987872 1045439 1301249..1302550 1 NC_002947.3 similar to GP:8571415, and GP:8571415; identified by sequence similarity; hypothetical protein 1302550 1045439 PP_1136 Pseudomonas putida KT2440 hypothetical protein NP_743297.1 1301249 D 160488 CDS NP_743298.1 26987873 1045466 complement(1302672..1303373) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00968; branched chain amino acid ABC transporter ATP-binding protein 1303373 braG 1045466 braG Pseudomonas putida KT2440 branched chain amino acid ABC transporter ATP-binding protein NP_743298.1 1302672 R 160488 CDS NP_743299.1 26987874 1045264 complement(1303374..1304141) 1 NC_002947.3 Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit 1304141 livG 1045264 livG Pseudomonas putida KT2440 leucine/isoleucine/valine transporter ATP-binding subunit NP_743299.1 1303374 R 160488 CDS NP_743300.1 26987875 1045255 complement(1304138..1305394) 1 NC_002947.3 Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit 1305394 livM 1045255 livM Pseudomonas putida KT2440 leucine/isoleucine/valine transporter permease subunit NP_743300.1 1304138 R 160488 CDS NP_743301.1 26987876 1045471 complement(1305391..1306314) 1 NC_002947.3 similar to GB:M30515, GB:M63599, GB:M20009, GB:X17290, GB:X17288, GB:X17369, GB:X17289, GB:M13577, GB:M30047, GB:M30516, GB:L18865, GB:L18866, GB:X17286, GB:X17287, SP:P02686, PID:187403, and PID:307161; identified by sequence similarity; inner-membrane translocator 1306314 braD 1045471 braD Pseudomonas putida KT2440 inner-membrane translocator NP_743301.1 1305391 R 160488 CDS NP_743302.1 26987877 1045445 complement(1306500..1307615) 1 NC_002947.3 similar to GB:Z11566, GB:J04991, GB:X53305, GB:M31303, GB:D28428, GB:X94912, SP:P16949, PID:1246757, PID:189388, PID:189426, PID:35595, and PID:57870; identified by sequence similarity; ABC transporter substrate-binding protein 1307615 braC 1045445 braC Pseudomonas putida KT2440 ABC transporter substrate-binding protein NP_743302.1 1306500 R 160488 CDS NP_743303.1 26987878 1045443 1307909..1308286 1 NC_002947.3 hypothetical protein 1308286 1045443 PP_1142 Pseudomonas putida KT2440 hypothetical protein NP_743303.1 1307909 D 160488 CDS NP_743304.1 26987879 1045459 1308479..1309366 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01505; 3-hydroxyisobutyrate dehydrogenase 1309366 1045459 PP_1143 Pseudomonas putida KT2440 3-hydroxyisobutyrate dehydrogenase NP_743304.1 1308479 D 160488 CDS NP_743305.1 26987880 1045464 complement(1309266..1311530) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00990; diguanylate cyclase 1311530 1045464 PP_1144 Pseudomonas putida KT2440 diguanylate cyclase NP_743305.1 1309266 R 160488 CDS NP_743306.1 26987881 1045495 complement(1311808..1314654) 1 NC_002947.3 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 1314654 hepA 1045495 hepA Pseudomonas putida KT2440 ATP-dependent helicase HepA NP_743306.1 1311808 R 160488 CDS NP_743307.1 26987882 1045480 1314805..1315500 1 NC_002947.3 hypothetical protein 1315500 1045480 PP_1146 Pseudomonas putida KT2440 hypothetical protein NP_743307.1 1314805 D 160488 CDS NP_743308.1 26987883 1045379 1315564..1315893 1 NC_002947.3 hypothetical protein 1315893 1045379 PP_1147 Pseudomonas putida KT2440 hypothetical protein NP_743308.1 1315564 D 160488 CDS NP_743309.1 26987884 1045478 1315929..1316123 1 NC_002947.3 hypothetical protein 1316123 1045478 PP_1148 Pseudomonas putida KT2440 hypothetical protein NP_743309.1 1315929 D 160488 CDS NP_743310.1 26987885 1045674 1316259..1316375 1 NC_002947.3 hypothetical protein 1316375 1045674 PP_1149 Pseudomonas putida KT2440 hypothetical protein NP_743310.1 1316259 D 160488 CDS NP_743311.1 26987886 1045675 1316581..1318569 1 NC_002947.3 similar to GP:9949434; identified by sequence similarity; fusaric acid resistance protein 1318569 1045675 PP_1150 Pseudomonas putida KT2440 fusaric acid resistance protein NP_743311.1 1316581 D 160488 CDS NP_743312.1 26987887 1045499 1318556..1318762 1 NC_002947.3 hypothetical protein 1318762 1045499 PP_1151 Pseudomonas putida KT2440 hypothetical protein NP_743312.1 1318556 D 160488 CDS NP_743313.1 26987888 1045482 1318775..1319644 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01730; secretion protein HlyD family protein 1319644 1045482 PP_1152 Pseudomonas putida KT2440 secretion protein HlyD family protein NP_743313.1 1318775 D 160488 CDS NP_743314.1 26987889 1045453 1319610..1320128 1 NC_002947.3 hypothetical protein 1320128 1045453 PP_1153 Pseudomonas putida KT2440 hypothetical protein NP_743314.1 1319610 D 160488 CDS NP_743315.1 26987890 1045664 complement(1320143..1322728) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00563; sensory box protein 1322728 1045664 PP_1154 Pseudomonas putida KT2440 sensory box protein NP_743315.1 1320143 R 160488 CDS NP_743316.1 26987891 1045469 complement(1322780..1323853) 1 NC_002947.3 similar to GP:7242806, GB:X59244, GB:X52358, SP:P17038, SP:P17040, SP:P28160, PID:184450, PID:38032, PID:930090, and PID:930092; identified by sequence similarity; diguanylate cyclase 1323853 1045469 PP_1155 Pseudomonas putida KT2440 diguanylate cyclase NP_743316.1 1322780 R 160488 CDS NP_743317.1 26987892 1045504 complement(1324132..1325028) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01226; formate/nitrate transporter 1325028 1045504 PP_1156 Pseudomonas putida KT2440 formate/nitrate transporter NP_743317.1 1324132 R 160488 CDS NP_743318.1 26987893 1045508 1330774..1332417 1 NC_002947.3 catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase 1332417 1045508 PP_1157 Pseudomonas putida KT2440 acetolactate synthase NP_743318.1 1330774 D 160488 CDS NP_743319.1 26987894 1045670 1333673..1334827 1 NC_002947.3 identified by match to PFAM protein family HMM PF03631; hypothetical protein 1334827 1045670 PP_1159 Pseudomonas putida KT2440 hypothetical protein NP_743319.1 1333673 D 160488 CDS NP_743320.1 26987895 1045685 1334824..1335813 1 NC_002947.3 similar to GP:10174241; identified by sequence similarity; asparaginase/glutaminase 1335813 1045685 PP_1160 Pseudomonas putida KT2440 asparaginase/glutaminase NP_743320.1 1334824 D 160488 CDS NP_743321.1 26987896 1045687 1335785..1336456 1 NC_002947.3 similar to GB:J04208, GB:L08114, GB:L33842, SP:P12268, PID:1702964, PID:292240, PID:307066, and PID:602458; identified by sequence similarity; metal-binding protein 1336456 1045687 PP_1161 Pseudomonas putida KT2440 metal-binding protein NP_743321.1 1335785 D 160488 CDS NP_743322.1 26987897 1045699 1336626..1337255 1 NC_002947.3 similar to GB:X04588, GB:J00312, GB:M12128, SP:P12324, PID:37424, and PID:553799; identified by sequence similarity; glutathione S-transferase 1337255 1045699 PP_1162 Pseudomonas putida KT2440 glutathione S-transferase NP_743322.1 1336626 D 160488 CDS NP_743323.1 26987898 1045689 1337283..1339319 1 NC_002947.3 identified by match to PFAM protein family HMM PF00970; FAD-binding oxidoreductase 1339319 1045689 PP_1163 Pseudomonas putida KT2440 FAD-binding oxidoreductase NP_743323.1 1337283 D 160488 CDS NP_743324.1 26987899 1045668 1339428..1340324 1 NC_002947.3 similar to GP:3169721; identified by sequence similarity; LysR family transcriptional regulator 1340324 1045668 PP_1164 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_743324.1 1339428 D 160488 CDS NP_743325.1 26987900 1045705 complement(1340397..1341266) 1 NC_002947.3 similar to GP:14523095; identified by sequence similarity; aldose 1-epimerase 1341266 1045705 PP_1165 Pseudomonas putida KT2440 aldose 1-epimerase NP_743325.1 1340397 R 160488 CDS NP_743326.1 26987901 1045794 complement(1341291..1342214) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03450; hypothetical protein 1342214 1045794 PP_1166 Pseudomonas putida KT2440 hypothetical protein NP_743326.1 1341291 R 160488 CDS NP_743327.1 26987902 1045720 complement(1342269..1343549) 1 NC_002947.3 similar to GP:2224837, GB:L20121, GB:L20122, GB:Z23115, SP:Q07817, PID:510901, and PID:623237; identified by sequence similarity; TRAP dicarboxylate transporter subunit DctM 1343549 1045720 PP_1167 Pseudomonas putida KT2440 TRAP dicarboxylate transporter subunit DctM NP_743327.1 1342269 R 160488 CDS NP_743328.2 161378138 1045721 complement(1343550..1344077) 1 NC_002947.3 similar to GP:15140814, SP:P25060, GB:X56183, and PID:45442; identified by sequence similarity; TRAP dicarboxylate transporter DctQ subunit 1344077 1045721 PP_1168 Pseudomonas putida KT2440 TRAP dicarboxylate transporter DctQ subunit NP_743328.2 1343550 R 160488 CDS NP_743329.1 26987904 1045711 complement(1344144..1345115) 1 NC_002947.3 similar to GP:10173315; identified by sequence similarity; TRAP dicarboxylate transporter subunit DctP 1345115 dctP 1045711 dctP Pseudomonas putida KT2440 TRAP dicarboxylate transporter subunit DctP NP_743329.1 1344144 R 160488 CDS NP_743330.1 26987905 1045777 complement(1345180..1346061) 1 NC_002947.3 similar to GP:7414553, and GP:15073038; identified by sequence similarity; SMP-30/gluconolaconase/LRE domain-containing protein 1346061 1045777 PP_1170 Pseudomonas putida KT2440 SMP-30/gluconolaconase/LRE domain-containing protein NP_743330.1 1345180 R 160488 CDS NP_743331.1 26987906 1045739 complement(1346084..1346890) 1 NC_002947.3 similar to GP:5420005, and GP:15160260; identified by sequence similarity; NAD-dependent epimerase/dehydratase 1346890 1045739 PP_1171 Pseudomonas putida KT2440 NAD-dependent epimerase/dehydratase NP_743331.1 1346084 R 160488 CDS NP_743332.1 26987907 1045722 1346975..1347190 1 NC_002947.3 hypothetical protein 1347190 1045722 PP_1172 Pseudomonas putida KT2440 hypothetical protein NP_743332.1 1346975 D 160488 CDS NP_743333.1 26987908 1045751 complement(1347294..1348532) 1 NC_002947.3 similar to GP:5091482; identified by sequence similarity; porin 1348532 1045751 PP_1173 Pseudomonas putida KT2440 porin NP_743333.1 1347294 R 160488 CDS NP_743334.1 26987909 1045867 complement(1349286..1349420) 1 NC_002947.3 hypothetical protein 1349420 1045867 PP_1174 Pseudomonas putida KT2440 hypothetical protein NP_743334.1 1349286 R 160488 CDS NP_743335.1 26987910 1045778 complement(1350102..1350197) 1 NC_002947.3 hypothetical protein 1350197 1045778 PP_1175 Pseudomonas putida KT2440 hypothetical protein NP_743335.1 1350102 R 160488 CDS NP_743336.1 26987911 1045769 complement(1350397..1350531) 1 NC_002947.3 hypothetical protein 1350531 1045769 PP_1176 Pseudomonas putida KT2440 hypothetical protein NP_743336.1 1350397 R 160488 CDS NP_743337.1 26987912 1045865 complement(1350532..1351782) 1 NC_002947.3 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 1351782 nrdB 1045865 nrdB Pseudomonas putida KT2440 ribonucleotide-diphosphate reductase subunit beta NP_743337.1 1350532 R 160488 CDS NP_743338.1 26987913 1045740 complement(1352224..1352487) 1 NC_002947.3 similar to GP:6689151; identified by sequence similarity; hypothetical protein 1352487 1045740 PP_1178 Pseudomonas putida KT2440 hypothetical protein NP_743338.1 1352224 R 160488 CDS NP_743339.1 26987914 1045795 complement(1352495..1355374) 1 NC_002947.3 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1355374 nrdA 1045795 nrdA Pseudomonas putida KT2440 ribonucleotide-diphosphate reductase subunit alpha NP_743339.1 1352495 R 160488 CDS NP_743340.1 26987915 1045887 1355585..1355731 1 NC_002947.3 hypothetical protein 1355731 1045887 PP_1180 Pseudomonas putida KT2440 hypothetical protein NP_743340.1 1355585 D 160488 CDS NP_743341.1 26987916 1045882 1356123..1356821 1 NC_002947.3 similar to GP:9947080, and GP:9947080; identified by sequence similarity; winged helix family two component transcriptional regulator 1356821 1045882 PP_1181 Pseudomonas putida KT2440 winged helix family two component transcriptional regulator NP_743341.1 1356123 D 160488 CDS NP_743342.1 26987917 1045871 1356818..1358425 1 NC_002947.3 identified by match to PFAM protein family HMM PF02518; integral membrane sensor signal transduction histidine kinase 1358425 1045871 PP_1182 Pseudomonas putida KT2440 integral membrane sensor signal transduction histidine kinase NP_743342.1 1356818 D 160488 CDS NP_743343.1 26987918 1045836 complement(1358429..1359130) 1 NC_002947.3 similar to GB:M12272, GB:X04299, GB:X04350, GB:M37068, SP:P00325, SP:P00326, SP:P07327, PID:178148, PID:28404, PID:598143, and PID:825622; identified by sequence similarity; 4'-phosphopantetheinyl transferase 1359130 1045836 PP_1183 Pseudomonas putida KT2440 4'-phosphopantetheinyl transferase NP_743343.1 1358429 R 160488 CDS NP_743344.1 26987919 1045881 complement(1359212..1360009) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01738; dienelactone hydrolase 1360009 1045881 PP_1184 Pseudomonas putida KT2440 dienelactone hydrolase NP_743344.1 1359212 R 160488 CDS NP_743345.1 26987920 1045841 1360133..1360738 1 NC_002947.3 outer membrane protein H1 1360738 oprH 1045841 oprH Pseudomonas putida KT2440 outer membrane protein H1 NP_743345.1 1360133 D 160488 CDS NP_743346.1 26987921 1045864 1360935..1361612 1 NC_002947.3 similar to GB:X12387, SP:P05184, SP:P08684, SP:P20815, PID:181354, PID:181372, PID:181374, PID:219963, PID:35911, and PID:510086; identified by sequence similarity; winged helix family two component transcriptional regulator 1361612 phoP 1045864 phoP Pseudomonas putida KT2440 winged helix family two component transcriptional regulator NP_743346.1 1360935 D 160488 CDS NP_743347.1 26987922 1045799 1361609..1362955 1 NC_002947.3 similar to GP:9947105, and GP:9947105; identified by sequence similarity; integral membrane sensor signal transduction histidine kinase 1362955 phoQ 1045799 phoQ Pseudomonas putida KT2440 integral membrane sensor signal transduction histidine kinase NP_743347.1 1361609 D 160488 CDS NP_743348.1 26987923 1045900 1363306..1364628 1 NC_002947.3 involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 1364628 dctA 1045900 dctA Pseudomonas putida KT2440 C4-dicarboxylate transporter DctA NP_743348.1 1363306 D 160488 CDS NP_743349.1 26987924 1045895 complement(1364777..1365475) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00104; hypothetical protein 1365475 1045895 PP_1189 Pseudomonas putida KT2440 hypothetical protein NP_743349.1 1364777 R 160488 CDS NP_743350.1 26987925 1045875 complement(1365476..1365937) 1 NC_002947.3 hypothetical protein 1365937 1045875 PP_1190 Pseudomonas putida KT2440 hypothetical protein NP_743350.1 1365476 R 160488 CDS NP_743351.1 26987926 1045873 complement(1365987..1366697) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01479; S4 domain-containing protein 1366697 1045873 PP_1191 Pseudomonas putida KT2440 S4 domain-containing protein NP_743351.1 1365987 R 160488 CDS NP_743352.1 26987927 1045893 complement(1366817..1367305) 1 NC_002947.3 similar to GP:9947377; identified by sequence similarity; acetyltransferase 1367305 1045893 PP_1192 Pseudomonas putida KT2440 acetyltransferase NP_743352.1 1366817 R 160488 CDS NP_743353.1 26987928 1045880 1367567..1368169 1 NC_002947.3 hypothetical protein 1368169 1045880 PP_1193 Pseudomonas putida KT2440 hypothetical protein NP_743353.1 1367567 D 160488 CDS NP_743354.1 26987929 1045874 1368292..1369206 1 NC_002947.3 hypothetical protein 1369206 1045874 PP_1194 Pseudomonas putida KT2440 hypothetical protein NP_743354.1 1368292 D 160488 CDS NP_743355.1 26987930 1045940 1369203..1370921 1 NC_002947.3 hypothetical protein 1370921 1045940 PP_1195 Pseudomonas putida KT2440 hypothetical protein NP_743355.1 1369203 D 160488 CDS NP_743356.1 26987931 1045896 1370970..1371725 1 NC_002947.3 hypothetical protein 1371725 1045896 PP_1196 Pseudomonas putida KT2440 hypothetical protein NP_743356.1 1370970 D 160488 CDS NP_743357.1 26987932 1045888 complement(1371797..1373209) 1 NC_002947.3 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase 1373209 rimO 1045888 rimO Pseudomonas putida KT2440 30S ribosomal protein S12 methylthiotransferase NP_743357.1 1371797 R 160488 CDS NP_743358.1 26987933 1045886 complement(1373329..1373625) 1 NC_002947.3 similar to GB:J04144, GB:A00914, SP:P12821, SP:P22966, PID:14653, and PID:178286; identified by sequence similarity; Cro/CI family transcriptional regulator 1373625 1045886 PP_1198 Pseudomonas putida KT2440 Cro/CI family transcriptional regulator NP_743358.1 1373329 R 160488 CDS NP_743359.1 26987934 1045937 complement(1373616..1373951) 1 NC_002947.3 hypothetical protein 1373951 1045937 PP_1199 Pseudomonas putida KT2440 hypothetical protein NP_743359.1 1373616 R 160488 CDS NP_743360.1 26987935 1045903 1374379..1376289 1 NC_002947.3 similar to SP:P30016; identified by sequence similarity; Kup system potassium uptake protein 1376289 kup 1045903 kup Pseudomonas putida KT2440 Kup system potassium uptake protein NP_743360.1 1374379 D 160488 CDS NP_743361.1 26987936 1045891 complement(1376338..1377630) 1 NC_002947.3 virulence factor family protein 1377630 1045891 PP_1201 Pseudomonas putida KT2440 virulence factor family protein NP_743361.1 1376338 R 160488 CDS NP_743362.1 26987937 1045883 complement(1377630..1380272) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03706; hypothetical protein 1380272 1045883 PP_1202 Pseudomonas putida KT2440 hypothetical protein NP_743362.1 1377630 R 160488 CDS NP_743363.1 26987938 1045968 1381248..1382312 1 NC_002947.3 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 1382312 dinP 1045968 dinP Pseudomonas putida KT2440 DNA polymerase IV NP_743363.1 1381248 D 160488 CDS NP_743364.1 26987939 1045931 complement(1382339..1383298) 1 NC_002947.3 lipoprotein 1383298 1045931 PP_1204 Pseudomonas putida KT2440 lipoprotein NP_743364.1 1382339 R 160488 CDS NP_743365.1 26987940 1045921 complement(1383313..1385028) 1 NC_002947.3 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1385028 proS 1045921 proS Pseudomonas putida KT2440 prolyl-tRNA synthetase NP_743365.1 1383313 R 160488 CDS NP_743366.1 26987941 1045899 complement(1385189..1386454) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03573; porin 1386454 oprD 1045899 oprD Pseudomonas putida KT2440 porin NP_743366.1 1385189 R 160488 CDS NP_743367.1 26987942 1045966 1387145..1387564 1 NC_002947.3 similar to GP:15154966; identified by sequence similarity; histidine triad (HIT) protein 1387564 1045966 PP_1207 Pseudomonas putida KT2440 histidine triad (HIT) protein NP_743367.1 1387145 D 160488 CDS NP_743368.1 26987943 1045953 1387566..1387772 1 NC_002947.3 similar to GP:9946867; identified by sequence similarity; hypothetical protein 1387772 1045953 PP_1208 Pseudomonas putida KT2440 hypothetical protein NP_743368.1 1387566 D 160488 CDS NP_743369.1 26987944 1045911 complement(1387894..1388169) 1 NC_002947.3 similar to GP:9946868; identified by sequence similarity; cold-shock domain-contain protein 1388169 1045911 PP_1209 Pseudomonas putida KT2440 cold-shock domain-contain protein NP_743369.1 1387894 R 160488 CDS NP_743370.1 26987945 1045907 1388769..1389242 1 NC_002947.3 identified by match to PFAM protein family HMM PF00210; DNA-binding stress protein 1389242 1045907 PP_1210 Pseudomonas putida KT2440 DNA-binding stress protein NP_743370.1 1388769 D 160488 CDS NP_743371.1 26987946 1046083 1389444..1389782 1 NC_002947.3 hypothetical protein 1389782 1046083 PP_1211 Pseudomonas putida KT2440 hypothetical protein NP_743371.1 1389444 D 160488 CDS NP_743372.1 26987947 1045969 1389877..1390098 1 NC_002947.3 similar to GP:7799507; identified by sequence similarity; hypothetical protein 1390098 1045969 PP_1212 Pseudomonas putida KT2440 hypothetical protein NP_743372.1 1389877 D 160488 CDS NP_743373.1 26987948 1046075 1390192..1391967 1 NC_002947.3 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1391967 aspS 1046075 aspS Pseudomonas putida KT2440 aspartyl-tRNA synthetase NP_743373.1 1390192 D 160488 CDS NP_743374.1 26987949 1045957 1392082..1392828 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01033; hypothetical protein 1392828 1045957 PP_1214 Pseudomonas putida KT2440 hypothetical protein NP_743374.1 1392082 D 160488 CDS NP_743375.1 26987950 1045934 1393014..1393538 1 NC_002947.3 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1393538 ruvC 1045934 ruvC Pseudomonas putida KT2440 Holliday junction resolvase NP_743375.1 1393014 D 160488 CDS NP_743376.1 26987951 1046077 1393648..1394265 1 NC_002947.3 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1394265 ruvA 1046077 ruvA Pseudomonas putida KT2440 Holliday junction DNA helicase RuvA NP_743376.1 1393648 D 160488 CDS NP_743377.1 26987952 1046067 1394262..1395308 1 NC_002947.3 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1395308 ruvB 1046067 ruvB Pseudomonas putida KT2440 Holliday junction DNA helicase RuvB NP_743377.1 1394262 D 160488 CDS NP_743378.1 26987953 1045952 1395434..1395886 1 NC_002947.3 similar to GP:5514775, and GP:5514775; identified by sequence similarity; hypothetical protein 1395886 1045952 PP_1218 Pseudomonas putida KT2440 hypothetical protein NP_743378.1 1395434 D 160488 CDS NP_743379.1 26987954 1045963 1395889..1396584 1 NC_002947.3 similar to GP:5514776, and GP:5514776; identified by sequence similarity; biopolymer transport protein TolQ 1396584 tolQ 1045963 tolQ Pseudomonas putida KT2440 biopolymer transport protein TolQ NP_743379.1 1395889 D 160488 CDS NP_743380.1 26987955 1046088 1396599..1397051 1 NC_002947.3 similar to GP:5514777, and GP:5514777; identified by sequence similarity; biopolymer transport protein TolR 1397051 tolR 1046088 tolR Pseudomonas putida KT2440 biopolymer transport protein TolR NP_743380.1 1396599 D 160488 CDS NP_743381.1 26987956 1046126 1397051..1398169 1 NC_002947.3 similar to GP:5514778, and GP:5514778; identified by sequence similarity; biopolymer transport protein TolA 1398169 tolA 1046126 tolA Pseudomonas putida KT2440 biopolymer transport protein TolA NP_743381.1 1397051 D 160488 CDS NP_743382.1 26987957 1046064 1398166..1399467 1 NC_002947.3 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1399467 tolB 1046064 tolB Pseudomonas putida KT2440 translocation protein TolB NP_743382.1 1398166 D 160488 CDS NP_743383.1 26987958 1046136 1399522..1400022 1 NC_002947.3 similar to GB:M67468, GB:S65791, GB:L29074, GB:X69962, SP:Q06787, PID:388726, PID:388728, PID:388734, PID:388736, PID:388738, PID:388740, PID:388742, PID:388744, PID:388752, PID:388754, PID:457239, PID:553289, PID:553290, PID:553291, GB:M67468, GB:S65791, GB:L29074, GB:X69962, SP:Q06787, PID:388726, PID:388728, PID:388734, PID:388736, PID:388738, PID:388740, PID:388742, PID:388744, PID:388752, PID:388754, PID:457239, PID:553289, PID:553290, PID:553291, GB:M67468, GB:S65791, GB:L29074, GB:X69962, SP:Q06787, PID:388726, PID:388728, PID:388734, PID:388736, PID:388738, PID:388740, PID:388742, PID:388744, PID:388752, PID:388754, PID:457239, PID:553289, PID:553290, PID:553291, GB:M67468, GB:S65791, GB:L29074, GB:X69962, SP:Q06787, PID:388726, PID:388728, PID:388734, PID:388736, PID:388738, PID:388740, PID:388742, PID:388744, PID:388752, PID:388754, PID:457239, PID:553289, PID:553290, and PID:553291; identified by sequence similarity; peptidoglycan-associated lipoprotein OprL 1400022 oprL 1046136 oprL Pseudomonas putida KT2440 peptidoglycan-associated lipoprotein OprL NP_743383.1 1399522 D 160488 CDS NP_743384.1 26987959 1046140 1400029..1400835 1 NC_002947.3 similar to GB:M67468, GB:S65791, GB:L29074, GB:X69962, SP:Q06787, PID:388726, PID:388728, PID:388734, PID:388736, PID:388738, PID:388740, PID:388742, PID:388744, PID:388752, PID:388754, PID:457239, PID:553289, PID:553290, PID:553291, GB:M67468, GB:S65791, GB:L29074, GB:X69962, SP:Q06787, PID:388726, PID:388728, PID:388734, PID:388736, PID:388738, PID:388740, PID:388742, PID:388744, PID:388752, PID:388754, PID:457239, PID:553289, PID:553290, and PID:553291; identified by sequence similarity; hypothetical protein 1400835 1046140 PP_1224 Pseudomonas putida KT2440 hypothetical protein NP_743384.1 1400029 D 160488 CDS NP_743385.1 26987960 1041963 1401004..1401651 1 NC_002947.3 similar to GP:5514780; identified by sequence similarity; radical SAM domain-containing protein 1401651 1041963 PP_1225 Pseudomonas putida KT2440 radical SAM domain-containing protein NP_743385.1 1401004 D 160488 CDS NP_743386.1 26987961 1046076 1401669..1402343 1 NC_002947.3 similar to GP:5514781; identified by sequence similarity; exoenzyme S synthesis protein B 1402343 exsB 1046076 exsB Pseudomonas putida KT2440 exoenzyme S synthesis protein B NP_743386.1 1401669 D 160488 CDS NP_743387.1 26987962 1046141 complement(1402573..1403532) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01545; cation efflux protein 1403532 1046141 PP_1227 Pseudomonas putida KT2440 cation efflux protein NP_743387.1 1402573 R 160488 CDS NP_743388.1 26987963 1046149 complement(1403613..1405679) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00672; methyl-accepting chemotaxis transducer 1405679 1046149 PP_1228 Pseudomonas putida KT2440 methyl-accepting chemotaxis transducer NP_743388.1 1403613 R 160488 CDS NP_743389.1 26987964 1046093 complement(1405746..1407098) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00324; amino acid ABC transporter permease 1407098 1046093 PP_1229 Pseudomonas putida KT2440 amino acid ABC transporter permease NP_743389.1 1405746 R 160488 CDS NP_743390.1 26987965 1046153 1407546..1409054 1 NC_002947.3 similar to GB:Z14982, GB:X62598, GB:X66401, GB:U17496, GB:U17497, GB:U32863, SP:P28062, PID:1045469, PID:1045471, PID:1054747, PID:38482, PID:596140, PID:596142, GB:Z14982, GB:X62598, GB:X66401, GB:U17496, GB:U17497, GB:U32863, SP:P28062, PID:1045469, PID:1045471, PID:1054747, PID:38482, PID:596140, and PID:596142; identified by sequence similarity; hypothetical protein 1409054 1046153 PP_1230 Pseudomonas putida KT2440 hypothetical protein NP_743390.1 1407546 D 160488 CDS NP_743391.1 26987966 1046143 1409329..1410387 1 NC_002947.3 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1410387 nadA 1046143 nadA Pseudomonas putida KT2440 quinolinate synthetase NP_743391.1 1409329 D 160488 CDS NP_743392.1 26987967 1046119 complement(1410496..1411932) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01435; hypothetical protein 1411932 1046119 PP_1232 Pseudomonas putida KT2440 hypothetical protein NP_743392.1 1410496 R 160488 CDS NP_743393.1 26987968 1046133 1412055..1412294 1 NC_002947.3 similar to GP:9946916; identified by sequence similarity; SirA family protein 1412294 1046133 PP_1233 Pseudomonas putida KT2440 SirA family protein NP_743393.1 1412055 D 160488 CDS NP_743394.1 26987969 1042447 1412315..1413385 1 NC_002947.3 similar to SP:P10131, and PID:44218; identified by sequence similarity; hypothetical protein 1413385 1042447 PP_1234 Pseudomonas putida KT2440 hypothetical protein NP_743394.1 1412315 D 160488 CDS NP_743395.1 26987970 1042439 complement(1413421..1413894) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00578; alkyl hydroperoxide reductase 1413894 1042439 PP_1235 Pseudomonas putida KT2440 alkyl hydroperoxide reductase NP_743395.1 1413421 R 160488 CDS NP_743396.1 26987971 1042085 complement(1413906..1414466) 1 NC_002947.3 similar to SP:P23483; identified by sequence similarity; glycine cleavage system transcriptional repressor 1414466 1042085 PP_1236 Pseudomonas putida KT2440 glycine cleavage system transcriptional repressor NP_743396.1 1413906 R 160488 CDS NP_743397.1 26987972 1046257 1414726..1415613 1 NC_002947.3 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1415613 dapA 1046257 dapA Pseudomonas putida KT2440 dihydrodipicolinate synthase NP_743397.1 1414726 D 160488 CDS NP_743398.1 26987973 1041980 1415629..1416750 1 NC_002947.3 similar to GP:9946921; identified by sequence similarity; lipoprotein 1416750 1041980 PP_1238 Pseudomonas putida KT2440 lipoprotein NP_743398.1 1415629 D 160488 CDS NP_743399.1 26987974 1046147 1416751..1417509 1 NC_002947.3 similar to GP:9946922; identified by sequence similarity; beta-lactamase domain-containing protein 1417509 1046147 PP_1239 Pseudomonas putida KT2440 beta-lactamase domain-containing protein NP_743399.1 1416751 D 160488 CDS NP_743400.1 26987975 1042268 1417540..1418250 1 NC_002947.3 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 1418250 purC 1042268 purC Pseudomonas putida KT2440 phosphoribosylaminoimidazolesuccinocarboxamide synthase NP_743400.1 1417540 D 160488 CDS NP_743401.1 26987976 1046260 complement(1418530..1418880) 1 NC_002947.3 similar to GP:9108007; identified by sequence similarity; hypothetical protein 1418880 1046260 PP_1241 Pseudomonas putida KT2440 hypothetical protein NP_743401.1 1418530 R 160488 CDS NP_743402.1 26987977 1046152 complement(1419237..1419371) 1 NC_002947.3 hypothetical protein 1419371 1046152 PP_1242 Pseudomonas putida KT2440 hypothetical protein NP_743402.1 1419237 R 160488 CDS NP_743403.1 26987978 1042089 1419478..1419648 1 NC_002947.3 hypothetical protein 1419648 1042089 PP_1243 Pseudomonas putida KT2440 hypothetical protein NP_743403.1 1419478 D 160488 CDS NP_743404.1 26987979 1042455 complement(1419645..1420010) 1 NC_002947.3 hypothetical protein 1420010 1042455 PP_1244 Pseudomonas putida KT2440 hypothetical protein NP_743404.1 1419645 R 160488 CDS NP_743405.1 26987980 1042456 1420519..1421409 1 NC_002947.3 hypothetical protein 1421409 1042456 PP_1245 Pseudomonas putida KT2440 hypothetical protein NP_743405.1 1420519 D 160488 CDS NP_743406.1 26987981 1042449 1421418..1423277 1 NC_002947.3 similar to GP:10179993; identified by sequence similarity; hypothetical protein 1423277 1042449 PP_1246 Pseudomonas putida KT2440 hypothetical protein NP_743406.1 1421418 D 160488 CDS NP_743407.1 26987982 1041735 complement(1423207..1424670) 1 NC_002947.3 hypothetical protein 1424670 1041735 PP_1247 Pseudomonas putida KT2440 hypothetical protein NP_743407.1 1423207 R 160488 CDS NP_743408.1 26987983 1041928 complement(1424597..1425364) 1 NC_002947.3 similar to SP:P37639, PID:466653, GB:U00096, and PID:1789933; identified by sequence similarity; amino acid transporter LysE 1425364 1041928 PP_1248 Pseudomonas putida KT2440 amino acid transporter LysE NP_743408.1 1424597 R 160488 CDS NP_743409.1 26987984 1042438 1425405..1425596 1 NC_002947.3 similar to GB:Y00486, GB:M16446, SP:P07741, PID:178867, and PID:28819; identified by sequence similarity; hypothetical protein 1425596 1042438 PP_1249 Pseudomonas putida KT2440 hypothetical protein NP_743409.1 1425405 D 160488 CDS NP_743410.1 26987985 1042464 1426101..1427522 1 NC_002947.3 similar to GP:4323583, GB:L01112, SP:P45375, PID:145016, and PID:1247706; identified by sequence similarity; group II intron-encoding maturase 1427522 1042464 PP_1250 Pseudomonas putida KT2440 group II intron-encoding maturase NP_743410.1 1426101 D 160488 CDS NP_743411.2 161378137 1042466 1427844..1429481 1 NC_002947.3 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 1429481 mqo-2 1042466 mqo-2 Pseudomonas putida KT2440 malate:quinone oxidoreductase NP_743411.2 1427844 D 160488 CDS NP_743412.1 26987987 1042461 1429961..1431382 1 NC_002947.3 similar to GB:L01112, SP:P45375, PID:145016, and PID:1247706; identified by sequence similarity; group II intron-encoding maturase 1431382 1042461 PP_1252 Pseudomonas putida KT2440 group II intron-encoding maturase NP_743412.1 1429961 D 160488 CDS NP_743413.1 26987988 1042452 complement(1431534..1431869) 1 NC_002947.3 similar to GB:L20868, GB:D23660, GB:T11045, GB:X73974, SP:P36578, PID:432359, and PID:560476; identified by sequence similarity; ArsR family transcriptional regulator 1431869 1042452 PP_1253 Pseudomonas putida KT2440 ArsR family transcriptional regulator NP_743413.1 1431534 R 160488 CDS NP_743414.1 26987989 1042453 1431919..1433010 1 NC_002947.3 similar to GP:6049281, and GP:6049281; identified by sequence similarity; xenobiotic reductase A 1433010 xenA 1042453 xenA Pseudomonas putida KT2440 xenobiotic reductase A NP_743414.1 1431919 D 160488 CDS NP_743415.1 26987990 1042470 complement(1433134..1434381) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00136; FAD dependent oxidoreductase 1434381 1042470 PP_1255 Pseudomonas putida KT2440 FAD dependent oxidoreductase NP_743415.1 1433134 R 160488 CDS NP_743416.1 26987991 1042468 complement(1434384..1435961) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01722; ketoglutarate semialdehyde dehydrogenase 1435961 1042468 PP_1256 Pseudomonas putida KT2440 ketoglutarate semialdehyde dehydrogenase NP_743416.1 1434384 R 160488 CDS NP_743417.1 26987992 1042610 complement(1436114..1437061) 1 NC_002947.3 similar to GB:X13543, and GB:X13541; identified by sequence similarity; dihydrodipicolinate synthase 1437061 1042610 PP_1257 Pseudomonas putida KT2440 dihydrodipicolinate synthase NP_743417.1 1436114 R 160488 CDS NP_743418.1 26987993 1041664 complement(1437104..1438030) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02567; proline racemase 1438030 1041664 PP_1258 Pseudomonas putida KT2440 proline racemase NP_743418.1 1437104 R 160488 CDS NP_743419.1 26987994 1045792 complement(1438054..1439667) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03600; amino acid ABC transporter permease 1439667 1045792 PP_1259 Pseudomonas putida KT2440 amino acid ABC transporter permease NP_743419.1 1438054 R 160488 CDS NP_743420.1 26987995 1042302 1440326..1441654 1 NC_002947.3 similar to GP:6723233; identified by sequence similarity; ISPpu9, transposase 1441654 1042302 PP_1260 Pseudomonas putida KT2440 ISPpu9, transposase NP_743420.1 1440326 D 160488 CDS NP_743421.1 26987996 1042480 complement(1442086..1443060) 1 NC_002947.3 Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 1443060 1042480 PP_1261 Pseudomonas putida KT2440 2-hydroxyacid dehydrogenase NP_743421.1 1442086 R 160488 CDS NP_743422.1 26987997 1042458 complement(1443236..1444183) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 1444183 1042458 PP_1262 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_743422.1 1443236 R 160488 CDS NP_743423.1 26987998 1042098 1444375..1445904 1 NC_002947.3 similar to GB:X12556, SP:P10911, PID:30482, and PID:825688; identified by sequence similarity; NodT family RND efflux system outer membrane lipoprotein 1445904 1042098 PP_1263 Pseudomonas putida KT2440 NodT family RND efflux system outer membrane lipoprotein NP_743423.1 1444375 D 160488 CDS NP_743424.1 26987999 1042509 1445901..1448078 1 NC_002947.3 similar to GB:L03558, GB:U46692, SP:P04080, PID:1235678, PID:291927, and GB:L13434; identified by sequence similarity; fusaric acid resistance protein 1448078 1042509 PP_1264 Pseudomonas putida KT2440 fusaric acid resistance protein NP_743424.1 1445901 D 160488 CDS NP_743425.1 26988000 1041861 1448068..1448268 1 NC_002947.3 similar to GB:M23114, GB:M23116, GB:M23278, GB:M23115, SP:P16614, SP:P16615, PID:306850, PID:306851, and PID:567108; identified by sequence similarity; hypothetical protein 1448268 1041861 PP_1265 Pseudomonas putida KT2440 hypothetical protein NP_743425.1 1448068 D 160488 CDS NP_743426.1 26988001 1041860 1448279..1449139 1 NC_002947.3 similar to GB:L08239, and PID:950412; identified by sequence similarity; secretion protein HlyD family protein 1449139 1041860 PP_1266 Pseudomonas putida KT2440 secretion protein HlyD family protein NP_743426.1 1448279 D 160488 CDS NP_743427.1 26988002 1042635 complement(1449212..1449679) 1 NC_002947.3 hypothetical protein 1449679 1042635 PP_1267 Pseudomonas putida KT2440 hypothetical protein NP_743427.1 1449212 R 160488 CDS NP_743428.1 26988003 1042484 complement(1449676..1450065) 1 NC_002947.3 SohA; PrlF; involved in protein secretion; when overproduced or mutated, it induces growth defect and increased export of a reporter protein; a PrlF mutation induces the activity of the Lon protease, and a Lon-deficient strain suppresses the phenotype conferred by the PrlF mutation; regulator PrlF 1450065 1042484 PP_1268 Pseudomonas putida KT2440 regulator PrlF NP_743428.1 1449676 R 160488 CDS NP_743429.1 26988004 1042477 complement(1450095..1450541) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00582; universal stress protein 1450541 1042477 PP_1269 Pseudomonas putida KT2440 universal stress protein NP_743429.1 1450095 R 160488 CDS NP_743430.1 26988005 1042090 1450815..1451720 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 1451720 1042090 PP_1270 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_743430.1 1450815 D 160488 CDS NP_743431.1 26988006 1041634 1451837..1453378 1 NC_002947.3 similar to GP:7677418; identified by sequence similarity; major facilitator superfamily transporter 1453378 1041634 PP_1271 Pseudomonas putida KT2440 major facilitator superfamily transporter NP_743431.1 1451837 D 160488 CDS NP_743432.1 26988007 1042500 1453365..1454468 1 NC_002947.3 similar to GP:7677417; identified by sequence similarity; secretion protein HlyD family protein 1454468 1042500 PP_1272 Pseudomonas putida KT2440 secretion protein HlyD family protein NP_743432.1 1453365 D 160488 CDS NP_743433.1 26988008 1044323 1454465..1455919 1 NC_002947.3 identified by match to PFAM protein family HMM PF02321; NodT family RND efflux system outer membrane lipoprotein 1455919 1044323 PP_1273 Pseudomonas putida KT2440 NodT family RND efflux system outer membrane lipoprotein NP_743433.1 1454465 D 160488 CDS NP_743434.1 26988009 1042248 complement(1456168..1456980) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02254; short chain dehydrogenase 1456980 1042248 PP_1274 Pseudomonas putida KT2440 short chain dehydrogenase NP_743434.1 1456168 R 160488 CDS NP_743435.1 26988010 1042491 complement(1457012..1457476) 1 NC_002947.3 similar to GP:9950061; identified by sequence similarity; hypothetical protein 1457476 1042491 PP_1275 Pseudomonas putida KT2440 hypothetical protein NP_743435.1 1457012 R 160488 CDS NP_743436.1 26988011 1043903 1457640..1458098 1 NC_002947.3 hypothetical protein 1458098 1043903 PP_1276 Pseudomonas putida KT2440 hypothetical protein NP_743436.1 1457640 D 160488 CDS NP_743437.1 26988012 1043792 complement(1458138..1459595) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00483; mannose-1-phosphate guanylyltransferase 1459595 algA 1043792 algA Pseudomonas putida KT2440 mannose-1-phosphate guanylyltransferase NP_743437.1 1458138 R 160488 CDS NP_743438.1 26988013 1042317 complement(1459628..1460275) 1 NC_002947.3 similar to GB:M26665, GB:M18372, GB:L05514, SP:P15515, SP:P15516, PID:179466, PID:184058, PID:292146, GB:M26665, GB:M18372, GB:L05514, SP:P15515, SP:P15516, PID:179466, PID:184058, and PID:292146; identified by sequence similarity; alginate O-acetyltransferase 1460275 algF 1042317 algF Pseudomonas putida KT2440 alginate O-acetyltransferase NP_743438.1 1459628 R 160488 CDS NP_743439.1 26988014 1042496 complement(1460296..1461462) 1 NC_002947.3 similar to GP:2920569, GB:U08277, GB:U08276, GB:U25638, GB:M63506, GB:U58978, SP:P01911, SP:P01912, SP:P04229, SP:P13758, SP:P13760, PID:1373011, PID:2231538, PID:386938, PID:490048, PID:533431, PID:533433, PID:533464, PID:540444, PID:540448, PID:540450, PID:553341, PID:553342, PID:553345, PID:553577, PID:553578, PID:553580, PID:553583, PID:553585, PID:602463, PID:602465, PID:688440, PID:703086, PID:825607, PID:841154, PID:841156, PID:847881, PID:847947, PID:860984, PID:862604, PID:902552, PID:929629, PID:929993, PID:971165, and PID:987615; identified by sequence similarity; alginate O-acetylation protein AlgJ 1461462 algJ 1042496 algJ Pseudomonas putida KT2440 alginate O-acetylation protein AlgJ NP_743439.1 1460296 R 160488 CDS NP_743440.1 26988015 1042485 complement(1461465..1462922) 1 NC_002947.3 similar to GB:U08277, GB:U08276, GB:U25638, GB:M63506, GB:U58978, SP:P01911, SP:P01912, SP:P04229, SP:P13758, SP:P13760, PID:1373011, PID:2231538, PID:386938, PID:490048, PID:533431, PID:533433, PID:533464, PID:540444, PID:540448, PID:540450, PID:553341, PID:553342, PID:553345, PID:553577, PID:553578, PID:553580, PID:553583, PID:553585, PID:602463, PID:602465, PID:688440, PID:703086, PID:825607, PID:841154, PID:841156, PID:847881, PID:847947, PID:860984, PID:862604, PID:902552, PID:929629, PID:929993, PID:971165, PID:987615, GB:U08277, GB:U08276, GB:U25638, GB:M63506, GB:U58978, SP:P01911, SP:P01912, SP:P04229, SP:P13758, SP:P13760, PID:1373011, PID:2231538, PID:386938, PID:490048, PID:533431, PID:533433, PID:533464, PID:540444, PID:540448, PID:540450, PID:553341, PID:553342, PID:553345, PID:553577, PID:553578, PID:553580, PID:553583, PID:553585, PID:602463, PID:602465, PID:688440, PID:703086, PID:825607, PID:841154, PID:841156, PID:847881, PID:847947, PID:860984, PID:862604, PID:902552, PID:929629, PID:92; alginate o-acetyltransferase AlgI 1462922 algI 1042485 algI Pseudomonas putida KT2440 alginate o-acetyltransferase AlgI NP_743440.1 1461465 R 160488 CDS NP_743441.1 26988016 1041918 complement(1463064..1464179) 1 NC_002947.3 Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond: may enhance the production of alginate by controlling the length of the polymer chain during export; poly(beta-D-mannuronate) lyase 1464179 algL 1041918 algL Pseudomonas putida KT2440 poly(beta-D-mannuronate) lyase NP_743441.1 1463064 R 160488 CDS NP_743442.1 26988017 1042603 complement(1464176..1465615) 1 NC_002947.3 similar to GP:2920566; identified by sequence similarity; alginate biosynthesis protein AlgX 1465615 algX 1042603 algX Pseudomonas putida KT2440 alginate biosynthesis protein AlgX NP_743442.1 1464176 R 160488 CDS NP_743443.1 26988018 1041703 complement(1465629..1467302) 1 NC_002947.3 similar to GB:M30515, GB:M63599, GB:M20009, GB:X17290, GB:X17288, GB:X17369, GB:X17289, GB:M13577, GB:M30047, GB:M30516, GB:L18865, GB:L18866, GB:X17286, GB:X17287, SP:P02686, PID:187403, PID:307161, GB:M30515, GB:M63599, GB:M20009, GB:X17290, GB:X17288, GB:X17369, GB:X17289, GB:M13577, GB:M30047, GB:M30516, GB:L18865, GB:L18866, GB:X17286, GB:X17287, SP:P02686, PID:187403, and PID:307161; identified by sequence similarity; carbohydrate-binding and sugar hydrolysis protein 1467302 1041703 PP_1283 Pseudomonas putida KT2440 carbohydrate-binding and sugar hydrolysis protein NP_743443.1 1465629 R 160488 CDS NP_743444.1 26988019 1041715 complement(1467211..1468689) 1 NC_002947.3 outer membrane protein AlgE 1468689 algE 1041715 algE Pseudomonas putida KT2440 outer membrane protein AlgE NP_743444.1 1467211 R 160488 CDS NP_743445.1 26988020 1043198 complement(1468686..1470140) 1 NC_002947.3 similar to GB:U00016, PID:466971, GB:U00016, and PID:466971; identified by sequence similarity; Sel1 domain-containing protein repeat-containing protein 1470140 algK 1043198 algK Pseudomonas putida KT2440 Sel1 domain-containing protein repeat-containing protein NP_743445.1 1468686 R 160488 CDS NP_743446.1 26988021 1044531 complement(1470130..1471296) 1 NC_002947.3 similar to GB:X06144, SP:P20921, and PID:45919; identified by sequence similarity; type IV pilus assembly PilZ 1471296 1044531 PP_1286 Pseudomonas putida KT2440 type IV pilus assembly PilZ NP_743446.1 1470130 R 160488 CDS NP_743447.1 26988022 1041865 complement(1471334..1472824) 1 NC_002947.3 alginate biosynthesis protein Alg8 1472824 1041865 PP_1287 Pseudomonas putida KT2440 alginate biosynthesis protein Alg8 NP_743447.1 1471334 R 160488 CDS NP_743448.1 26988023 1041882 complement(1472902..1474218) 1 NC_002947.3 similar to GB:U00020, PID:467113, GB:U00020, and PID:467113; identified by sequence similarity; GDP-mannose 6-dehydrogenase 1474218 algD 1041882 algD Pseudomonas putida KT2440 GDP-mannose 6-dehydrogenase NP_743448.1 1472902 R 160488 CDS NP_743449.1 26988024 1043300 complement(1475019..1475798) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03883; hypothetical protein 1475798 1043300 PP_1289 Pseudomonas putida KT2440 hypothetical protein NP_743449.1 1475019 R 160488 CDS NP_743450.1 26988025 1041748 1475819..1477063 1 NC_002947.3 identified by match to PFAM protein family HMM PF01522; polysaccharide deacetylase 1477063 1041748 PP_1290 Pseudomonas putida KT2440 polysaccharide deacetylase NP_743450.1 1475819 D 160488 CDS NP_743451.1 26988026 1043881 1477345..1478739 1 NC_002947.3 identified by match to PFAM protein family HMM PF02562; PhoH family protein 1478739 1043881 PP_1291 Pseudomonas putida KT2440 PhoH family protein NP_743451.1 1477345 D 160488 CDS NP_743452.1 26988027 1041756 1478935..1479405 1 NC_002947.3 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 1479405 moaC 1041756 moaC Pseudomonas putida KT2440 molybdenum cofactor biosynthesis protein MoaC NP_743452.1 1478935 D 160488 CDS NP_743453.1 26988028 1043756 1479402..1479650 1 NC_002947.3 similar to GB:J02971, GB:J03478, GB:X12706, GB:X04688, GB:X12705, SP:P05113, PID:288310, PID:29393, PID:33836, PID:386822, and PID:386823; identified by sequence similarity; molybdopterin converting factor subunit 1 1479650 moaD 1043756 moaD Pseudomonas putida KT2440 molybdopterin converting factor subunit 1 NP_743453.1 1479402 D 160488 CDS NP_743454.1 26988029 1041666 1479653..1480099 1 NC_002947.3 similar to SP:P30749; identified by sequence similarity; molybdopterin biosynthesis protein MoaE 1480099 moaE 1041666 moaE Pseudomonas putida KT2440 molybdopterin biosynthesis protein MoaE NP_743454.1 1479653 D 160488 CDS NP_743455.2 161378136 1044132 complement(1480293..1481735) 1 NC_002947.3 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 1481735 rhlB 1044132 rhlB Pseudomonas putida KT2440 ATP-dependent RNA helicase RhlB NP_743455.2 1480293 R 160488 CDS NP_743456.1 26988031 1043413 complement(1481836..1482492) 1 NC_002947.3 similar to GB:M55406, SP:Q02505, PID:553594, GB:M55406, SP:Q02505, and PID:553594; identified by sequence similarity; carboxylesterase 1482492 estB 1043413 estB Pseudomonas putida KT2440 carboxylesterase NP_743456.1 1481836 R 160488 CDS NP_743457.1 26988032 1041863 1482825..1483853 1 NC_002947.3 similar to GB:X17025, and PID:488750; identified by sequence similarity; amino acid ABC transporter substrate-binding protein 1483853 aapJ 1041863 aapJ Pseudomonas putida KT2440 amino acid ABC transporter substrate-binding protein NP_743457.1 1482825 D 160488 CDS NP_743458.1 26988033 1041680 1483921..1485099 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01726; polar amino acid ABC transporter permease 1485099 aapQ 1041680 aapQ Pseudomonas putida KT2440 polar amino acid ABC transporter permease NP_743458.1 1483921 D 160488 CDS NP_743459.1 26988034 1044174 1485110..1486207 1 NC_002947.3 similar to GP:2961078; identified by sequence similarity; polar amino acid ABC transporter inner membrane subunit 1486207 aapM 1044174 aapM Pseudomonas putida KT2440 polar amino acid ABC transporter inner membrane subunit NP_743459.1 1485110 D 160488 CDS NP_743460.1 26988035 1042512 1486218..1486982 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00968; general amino acid ABC transporter ATP-binding protein 1486982 aapP 1042512 aapP Pseudomonas putida KT2440 general amino acid ABC transporter ATP-binding protein NP_743460.1 1486218 D 160488 CDS NP_743461.1 26988036 1044377 complement(1487112..1488320) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00595; 2-alkenal reductase 1488320 algW 1044377 algW Pseudomonas putida KT2440 2-alkenal reductase NP_743461.1 1487112 R 160488 CDS NP_743462.1 26988037 1043970 1488441..1489199 1 NC_002947.3 identified by match to PFAM protein family HMM PF01784; hypothetical protein 1489199 1043970 PP_1302 Pseudomonas putida KT2440 hypothetical protein NP_743462.1 1488441 D 160488 CDS NP_743463.1 26988038 1041607 1489402..1490319 1 NC_002947.3 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 1490319 cysD 1041607 cysD Pseudomonas putida KT2440 sulfate adenylyltransferase subunit 2 NP_743463.1 1489402 D 160488 CDS NP_743464.1 26988039 1046125 1490336..1492237 1 NC_002947.3 in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from EScherichia coli involved in cysteine biosynthesis; bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase 1492237 cysNC 1046125 cysNC Pseudomonas putida KT2440 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase NP_743464.1 1490336 D 160488 CDS NP_743465.1 26988040 1041707 complement(1492332..1492595) 1 NC_002947.3 similar to GP:1942132; identified by sequence similarity; Pyocin S-type immunity protein 1492595 1041707 PP_1305 Pseudomonas putida KT2440 Pyocin S-type immunity protein NP_743465.1 1492332 R 160488 CDS NP_743466.1 26988041 1043967 complement(1492592..1494868) 1 NC_002947.3 similar to SP:Q06583, GB:M31013, GB:D11393, SP:P35579, PID:1679804, PID:189036, and PID:553596; identified by sequence similarity; pyocin S-type Killer domain-containing protein 1494868 1043967 PP_1306 Pseudomonas putida KT2440 pyocin S-type Killer domain-containing protein NP_743466.1 1492592 R 160488 CDS NP_743467.1 26988042 1041672 complement(1494963..1495442) 1 NC_002947.3 similar to GB:M74578, PID:452832, and PID:455428; identified by sequence similarity; AsnC family transcriptional regulator 1495442 1041672 PP_1307 Pseudomonas putida KT2440 AsnC family transcriptional regulator NP_743467.1 1494963 R 160488 CDS NP_743468.1 26988043 1041604 1495570..1496766 1 NC_002947.3 catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine; methionine gamma-lyase 1496766 mdeA 1041604 mdeA Pseudomonas putida KT2440 methionine gamma-lyase NP_743468.1 1495570 D 160488 CDS NP_743469.1 26988044 1042974 complement(1496838..1497275) 1 NC_002947.3 similar to GP:9950675; identified by sequence similarity; hypothetical protein 1497275 1042974 PP_1309 Pseudomonas putida KT2440 hypothetical protein NP_743469.1 1496838 R 160488 CDS NP_743470.1 26988045 1042638 1497411..1498046 1 NC_002947.3 similar to GP:9950674; identified by sequence similarity; hypothetical protein 1498046 1042638 PP_1310 Pseudomonas putida KT2440 hypothetical protein NP_743470.1 1497411 D 160488 CDS NP_743471.1 26988046 1041624 1498072..1499421 1 NC_002947.3 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1499421 1041624 PP_1311 Pseudomonas putida KT2440 tryptophanyl-tRNA synthetase NP_743471.1 1498072 D 160488 CDS NP_743472.1 26988047 1041626 1499583..1500677 1 NC_002947.3 identified by match to PFAM protein family HMM PF03969; AFG1 family ATPase 1500677 1041626 PP_1312 Pseudomonas putida KT2440 AFG1 family ATPase NP_743472.1 1499583 D 160488 CDS NP_743473.1 26988048 1044527 complement(1500784..1501704) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 1501704 1044527 PP_1313 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_743473.1 1500784 R 160488 CDS NP_743474.1 26988049 1041603 complement(1501895..1502935) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01293; aldo/keto reductase 1502935 1041603 PP_1314 Pseudomonas putida KT2440 aldo/keto reductase NP_743474.1 1501895 R 160488 CDS NP_743475.1 26988050 1043891 1503194..1503622 1 NC_002947.3 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 1503622 rplM 1043891 rplM Pseudomonas putida KT2440 50S ribosomal protein L13 NP_743475.1 1503194 D 160488 CDS NP_743476.1 26988051 1041596 1503637..1504029 1 NC_002947.3 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 1504029 rpsI 1041596 rpsI Pseudomonas putida KT2440 30S ribosomal protein S9 NP_743476.1 1503637 D 160488 CDS NP_743477.1 26988052 1044363 1504292..1504885 1 NC_002947.3 identified by match to PFAM protein family HMM PF00355; ubiquinol-cytochrome c reductase, iron-sulfur subunit 1504885 petA 1044363 petA Pseudomonas putida KT2440 ubiquinol-cytochrome c reductase, iron-sulfur subunit NP_743477.1 1504292 D 160488 CDS NP_743478.1 26988053 1041759 1504885..1506096 1 NC_002947.3 similar to GB:M28826, GB:M22168, GB:M22169, GB:M22170, GB:M22171, GB:M22172, GB:M22173, GB:M14665, SP:P29016, PID:180050, PID:180056, and PID:180064; identified by sequence similarity; ubiquinol--cytochrome c reductase, cytochrome b 1506096 petB 1041759 petB Pseudomonas putida KT2440 ubiquinol--cytochrome c reductase, cytochrome b NP_743478.1 1504885 D 160488 CDS NP_743479.1 26988054 1041644 1506096..1506875 1 NC_002947.3 similar to GP:9950662; identified by sequence similarity; ubiquinol--cytochrome c reductase, cytochrome c1 1506875 petC 1041644 petC Pseudomonas putida KT2440 ubiquinol--cytochrome c reductase, cytochrome c1 NP_743479.1 1506096 D 160488 CDS NP_743480.1 26988055 1043611 1506992..1507615 1 NC_002947.3 similar to GP:9864180; identified by sequence similarity; stringent starvation protein A 1507615 sspA 1043611 sspA Pseudomonas putida KT2440 stringent starvation protein A NP_743480.1 1506992 D 160488 CDS NP_743481.1 26988056 1041601 1507596..1508057 1 NC_002947.3 similar to GB:S50157, GB:X60221, SP:P24539, and PID:509291; identified by sequence similarity; ClpXP protease specificity-enhancing factor 1508057 sspB 1041601 sspB Pseudomonas putida KT2440 ClpXP protease specificity-enhancing factor NP_743481.1 1507596 D 160488 CDS NP_743482.1 26988057 1042517 complement(1508119..1508697) 1 NC_002947.3 transport-associated protein 1508697 1042517 PP_1322 Pseudomonas putida KT2440 transport-associated protein NP_743482.1 1508119 R 160488 CDS NP_743483.1 26988058 1042979 complement(1508694..1509281) 1 NC_002947.3 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 1509281 gmhA 1042979 gmhA Pseudomonas putida KT2440 phosphoheptose isomerase NP_743483.1 1508694 R 160488 CDS NP_743484.1 26988059 1041908 complement(1509374..1509748) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00252; hypothetical protein 1509748 1041908 PP_1324 Pseudomonas putida KT2440 hypothetical protein NP_743484.1 1509374 R 160488 CDS NP_743485.1 26988060 1041718 complement(1509745..1511562) 1 NC_002947.3 LppC family lipoprotein 1511562 1041718 PP_1325 Pseudomonas putida KT2440 LppC family lipoprotein NP_743485.1 1509745 R 160488 CDS NP_743486.1 26988061 1041645 1511740..1512624 1 NC_002947.3 identified by match to PFAM protein family HMM PF00590; uroporphyrin-III C/tetrapyrrole methyltransferase 1512624 1041645 PP_1326 Pseudomonas putida KT2440 uroporphyrin-III C/tetrapyrrole methyltransferase NP_743486.1 1511740 D 160488 CDS NP_743487.1 26988062 1041659 1513358..1513831 1 NC_002947.3 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 1513831 1041659 PP_1328 Pseudomonas putida KT2440 cell division protein MraZ NP_743487.1 1513358 D 160488 CDS NP_743488.1 26988063 1043466 1513828..1514775 1 NC_002947.3 similar to GP:9950652; identified by sequence similarity; S-adenosyl-methyltransferase MraW 1514775 mraW 1043466 mraW Pseudomonas putida KT2440 S-adenosyl-methyltransferase MraW NP_743488.1 1513828 D 160488 CDS NP_743489.1 26988064 1044037 1514772..1515065 1 NC_002947.3 similar to GB:M11186, GB:M62611, SP:P01178, PID:189411, PID:386991, and PID:825699; identified by sequence similarity; cell division protein FtsL 1515065 ftsL 1044037 ftsL Pseudomonas putida KT2440 cell division protein FtsL NP_743489.1 1514772 D 160488 CDS NP_743490.1 26988065 1042450 1515062..1516810 1 NC_002947.3 similar to GB:X65873, SP:P33176, PID:34083, GB:X74764, SP:Q16832, and PID:433338; identified by sequence similarity; peptidoglycan glycosyltransferase 1516810 ftsI 1042450 ftsI Pseudomonas putida KT2440 peptidoglycan glycosyltransferase NP_743490.1 1515062 D 160488 CDS NP_743491.1 26988066 1041725 1516807..1518297 1 NC_002947.3 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1518297 murE 1041725 murE Pseudomonas putida KT2440 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase NP_743491.1 1516807 D 160488 CDS NP_743492.1 26988067 1043795 1518290..1519657 1 NC_002947.3 similar to GB:X64229, SP:P35659, and PID:30503; identified by sequence similarity; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 1519657 murF 1043795 murF Pseudomonas putida KT2440 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase NP_743492.1 1518290 D 160488 CDS NP_743493.1 26988068 1042729 1519657..1520739 1 NC_002947.3 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1520739 mraY 1042729 mraY Pseudomonas putida KT2440 phospho-N-acetylmuramoyl-pentapeptide- transferase NP_743493.1 1519657 D 160488 CDS NP_743494.1 26988069 1041728 1520740..1522092 1 NC_002947.3 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 1522092 murD 1041728 murD Pseudomonas putida KT2440 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase NP_743494.1 1520740 D 160488 CDS NP_743495.1 26988070 1041667 1522089..1523303 1 NC_002947.3 identified by match to PFAM protein family HMM PF01098; cell division protein FtsW 1523303 ftsW 1041667 ftsW Pseudomonas putida KT2440 cell division protein FtsW NP_743495.1 1522089 D 160488 CDS NP_743496.1 26988071 1044364 1523293..1524372 1 NC_002947.3 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDPdiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1524372 murG 1044364 murG Pseudomonas putida KT2440 UDPdiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase NP_743496.1 1523293 D 160488 CDS NP_743497.1 26988072 1041656 1524365..1525813 1 NC_002947.3 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 1525813 murC 1041656 murC Pseudomonas putida KT2440 UDP-N-acetylmuramate--L-alanine ligase NP_743497.1 1524365 D 160488 CDS NP_743498.1 26988073 1044021 1525810..1526766 1 NC_002947.3 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 1526766 ddl 1044021 ddl Pseudomonas putida KT2440 D-alanine--D-alanine ligase NP_743498.1 1525810 D 160488 CDS NP_743499.1 26988074 1041867 1526772..1527641 1 NC_002947.3 identified by match to PFAM protein family HMM PF03799; cell division protein FtsQ 1527641 ftsQ 1041867 ftsQ Pseudomonas putida KT2440 cell division protein FtsQ NP_743499.1 1526772 D 160488 CDS NP_743500.1 26988075 1043828 1527587..1528918 1 NC_002947.3 similar to GP:2707899; identified by sequence similarity; cell division protein FtsA 1528918 ftsA 1043828 ftsA Pseudomonas putida KT2440 cell division protein FtsA NP_743500.1 1527587 D 160488 CDS NP_743501.1 26988076 1042519 1528974..1530170 1 NC_002947.3 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1530170 ftsZ 1042519 ftsZ Pseudomonas putida KT2440 cell division protein FtsZ NP_743501.1 1528974 D 160488 CDS NP_743502.1 26988077 1042966 1530283..1531194 1 NC_002947.3 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1531194 lpxC 1042966 lpxC Pseudomonas putida KT2440 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase NP_743502.1 1530283 D 160488 CDS NP_743503.1 26988078 1041731 complement(1531242..1531871) 1 NC_002947.3 similar to GP:9950637; identified by sequence similarity; hypothetical protein 1531871 1041731 PP_1344 Pseudomonas putida KT2440 hypothetical protein NP_743503.1 1531242 R 160488 CDS NP_743504.2 161378135 1041726 1532070..1534805 1 NC_002947.3 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 1534805 secA 1041726 secA Pseudomonas putida KT2440 preprotein translocase subunit SecA NP_743504.2 1532070 D 160488 CDS NP_743505.1 26988080 1046524 1534988..1536205 1 NC_002947.3 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 1536205 argJ 1046524 argJ Pseudomonas putida KT2440 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase NP_743505.1 1534988 D 160488 CDS NP_743506.1 26988081 1041795 1536361..1536993 1 NC_002947.3 similar to GP:15076291; identified by sequence similarity; glutathione S-transferase 1536993 1041795 PP_1347 Pseudomonas putida KT2440 glutathione S-transferase NP_743506.1 1536361 D 160488 CDS NP_743507.1 26988082 1047011 1536990..1537934 1 NC_002947.3 similar to GP:9950631; identified by sequence similarity; hypothetical protein 1537934 1047011 PP_1348 Pseudomonas putida KT2440 hypothetical protein NP_743507.1 1536990 D 160488 CDS NP_743508.1 26988083 1041778 complement(1537967..1538533) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00636; ATP--cobalamin adenosyltransferase 1538533 1041778 PP_1349 Pseudomonas putida KT2440 ATP--cobalamin adenosyltransferase NP_743508.1 1537967 R 160488 CDS NP_743509.1 26988084 1041727 complement(1538535..1540565) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02518; multi-sensor signal transduction histidine kinase 1540565 1041727 PP_1350 Pseudomonas putida KT2440 multi-sensor signal transduction histidine kinase NP_743509.1 1538535 R 160488 CDS NP_743510.1 26988085 1043947 complement(1540603..1541520) 1 NC_002947.3 catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase 1541520 1043947 PP_1351 Pseudomonas putida KT2440 2-dehydropantoate 2-reductase NP_743510.1 1540603 R 160488 CDS NP_743511.1 26988086 1041828 1541621..1542106 1 NC_002947.3 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 1542106 1041828 PP_1352 Pseudomonas putida KT2440 nucleotide-binding protein NP_743511.1 1541621 D 160488 CDS NP_743512.1 26988087 1041741 1542217..1543065 1 NC_002947.3 identified by match to PFAM protein family HMM PF00924; mechanosensitive ion channel protein MscS 1543065 1041741 PP_1353 Pseudomonas putida KT2440 mechanosensitive ion channel protein MscS NP_743512.1 1542217 D 160488 CDS NP_743513.1 26988088 1041948 1543193..1544437 1 NC_002947.3 similar to GP:1619595; identified by sequence similarity; major facilitator superfamily transporter 1544437 1041948 PP_1354 Pseudomonas putida KT2440 major facilitator superfamily transporter NP_743513.1 1543193 D 160488 CDS NP_743514.1 26988089 1041730 complement(1544551..1546098) 1 NC_002947.3 similar to SP:P25149, GB:X52480, PID:580865, PID:580945, and GB:AL009126; identified by sequence similarity; AmpG-related permease 1546098 ampG 1041730 ampG Pseudomonas putida KT2440 AmpG-related permease NP_743514.1 1544551 R 160488 CDS NP_743515.1 26988090 1043937 complement(1546142..1546495) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00589; hypothetical protein 1546495 1043937 PP_1356 Pseudomonas putida KT2440 hypothetical protein NP_743515.1 1546142 R 160488 CDS NP_743516.1 26988091 1042533 1546543..1547670 1 NC_002947.3 similar to GP:9950620, and GP:9950620; identified by sequence similarity; hypothetical protein 1547670 1042533 PP_1357 Pseudomonas putida KT2440 hypothetical protein NP_743516.1 1546543 D 160488 CDS NP_743517.1 26988092 1041772 1547615..1548484 1 NC_002947.3 similar to GP:9950618; identified by sequence similarity; hypothetical protein 1548484 1041772 PP_1358 Pseudomonas putida KT2440 hypothetical protein NP_743517.1 1547615 D 160488 CDS NP_743518.1 26988093 1041761 1548550..1549011 1 NC_002947.3 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein 1549011 fxsA 1041761 fxsA Pseudomonas putida KT2440 FxsA protein NP_743518.1 1548550 D 160488 CDS NP_743519.1 26988094 1044005 1549256..1549549 1 NC_002947.3 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 1549549 groES 1044005 groES Pseudomonas putida KT2440 co-chaperonin GroES NP_743519.1 1549256 D 160488 CDS NP_743520.1 26988095 1042522 1549597..1551237 1 NC_002947.3 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 1551237 groEL 1042522 groEL Pseudomonas putida KT2440 molecular chaperone GroEL NP_743520.1 1549597 D 160488 CDS NP_743521.1 26988096 1044034 complement(1551363..1552817) 1 NC_002947.3 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1552817 pykA 1044034 pykA Pseudomonas putida KT2440 pyruvate kinase NP_743521.1 1551363 R 160488 CDS NP_743522.1 26988097 1042079 1552956..1553384 1 NC_002947.3 hypothetical protein 1553384 1042079 PP_1363 Pseudomonas putida KT2440 hypothetical protein NP_743522.1 1552956 D 160488 CDS NP_743523.1 26988098 1041754 1553394..1553867 1 NC_002947.3 similar to GP:9950548; identified by sequence similarity; type IV pilus assembly PilZ 1553867 1041754 PP_1364 Pseudomonas putida KT2440 type IV pilus assembly PilZ NP_743523.1 1553394 D 160488 CDS NP_743524.1 26988099 1044122 1553925..1555358 1 NC_002947.3 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 1555358 sbcB 1044122 sbcB Pseudomonas putida KT2440 exonuclease I NP_743524.1 1553925 D 160488 CDS NP_743525.1 26988100 1041869 complement(1555432..1555809) 1 NC_002947.3 similar to GP:9950539, GB:Z31695, and PID:469144; identified by sequence similarity; transcriptional regulator MvaT, P16 subunit 1555809 1041869 PP_1366 Pseudomonas putida KT2440 transcriptional regulator MvaT, P16 subunit NP_743525.1 1555432 R 160488 CDS NP_743526.1 26988101 1041724 1556093..1556944 1 NC_002947.3 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1556944 purU 1041724 purU Pseudomonas putida KT2440 formyltetrahydrofolate deformylase NP_743526.1 1556093 D 160488 CDS NP_743527.1 26988102 1041868 complement(1557176..1558168) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03706; hypothetical protein 1558168 1041868 PP_1368 Pseudomonas putida KT2440 hypothetical protein NP_743527.1 1557176 R 160488 CDS NP_743528.1 26988103 1043928 complement(1558165..1558896) 1 NC_002947.3 similar to GP:9950535, and GP:9950535; identified by sequence similarity; hypothetical protein 1558896 1043928 PP_1369 Pseudomonas putida KT2440 hypothetical protein NP_743528.1 1558165 R 160488 CDS NP_743529.1 26988104 1043900 complement(1558922..1560043) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00534; glycoside hydrolase family protein 1560043 1043900 PP_1370 Pseudomonas putida KT2440 glycoside hydrolase family protein NP_743529.1 1558922 R 160488 CDS NP_743530.1 26988105 1042534 complement(1560212..1562086) 1 NC_002947.3 similar to GB:M90644, SP:P32001, PID:144139, GB:M90644, SP:P32001, and PID:144139; identified by sequence similarity; methyl-accepting chemotaxis transducer 1562086 1042534 PP_1371 Pseudomonas putida KT2440 methyl-accepting chemotaxis transducer NP_743530.1 1560212 R 160488 CDS NP_743531.1 26988106 1041953 1562255..1563730 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01428; hypothetical protein 1563730 1041953 PP_1372 Pseudomonas putida KT2440 hypothetical protein NP_743531.1 1562255 D 160488 CDS NP_743532.1 26988107 1041750 complement(1563852..1565324) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01384; phosphate transporter 1565324 1041750 PP_1373 Pseudomonas putida KT2440 phosphate transporter NP_743532.1 1563852 R 160488 CDS NP_743533.1 26988108 1043943 complement(1565637..1565837) 1 NC_002947.3 similar to GP:9950512; identified by sequence similarity; hypothetical protein 1565837 1043943 PP_1374 Pseudomonas putida KT2440 hypothetical protein NP_743533.1 1565637 R 160488 CDS NP_743534.1 26988109 1043894 1566317..1567192 1 NC_002947.3 similar to GB:X15341, SP:P12074, PID:30153, GB:X15341, SP:P12074, and PID:30153; identified by sequence similarity; pca regulon regulatory protein 1567192 pcaR 1043894 pcaR Pseudomonas putida KT2440 pca regulon regulatory protein NP_743534.1 1566317 D 160488 CDS NP_743535.1 26988110 1043926 1567513..1568859 1 NC_002947.3 similar to SP:Q51955, and SP:Q51955; identified by sequence similarity; benzoate transport 1568859 pcaK 1043926 pcaK Pseudomonas putida KT2440 benzoate transport NP_743535.1 1567513 D 160488 CDS NP_743536.1 26988111 1041755 1569186..1570388 1 NC_002947.3 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase 1570388 pcaF 1041755 pcaF Pseudomonas putida KT2440 beta-ketoadipyl CoA thiolase NP_743536.1 1569186 D 160488 CDS NP_743537.1 26988112 1043906 1570576..1571865 1 NC_002947.3 similar to GP:5091487, GB:U08275, GB:M74032, SP:P01911, SP:P01912, SP:P04229, SP:P13758, SP:P13759, SP:P13760, PID:1143290, PID:483934, PID:490048, PID:533429, PID:540448, PID:540450, PID:553341, PID:553342, PID:553345, PID:553577, PID:553580, PID:553581, PID:553583, PID:602463, PID:639905, PID:688440, PID:695363, PID:695364, PID:703086, PID:825462, PID:825607, PID:841152, PID:841154, PID:847881, PID:860984, PID:862604, PID:902552, PID:929629, PID:971165, PID:984933, PID:987658, and PID:995769; identified by sequence similarity; metabolite/H+ symportermajor facilitator superfamily metabolite/H+ symporter 1571865 pcaT 1043906 pcaT Pseudomonas putida KT2440 metabolite/H+ symportermajor facilitator superfamily metabolite/H+ symporter NP_743537.1 1570576 D 160488 CDS NP_743538.1 26988113 1043939 1571875..1573227 1 NC_002947.3 Catalyzes the cycloisomerization of cis,cis-muconate; 3-carboxy-cis,cis-muconate cycloisomerase 1573227 pcaB 1043939 pcaB Pseudomonas putida KT2440 3-carboxy-cis,cis-muconate cycloisomerase NP_743538.1 1571875 D 160488 CDS NP_743539.1 26988114 1042540 1573239..1574030 1 NC_002947.3 similar to GP:5091485, and GP:2935027; identified by sequence similarity; 3-oxoadipate enol-lactonase 1574030 pcaD 1042540 pcaD Pseudomonas putida KT2440 3-oxoadipate enol-lactonase NP_743539.1 1573239 D 160488 CDS NP_743540.1 26988115 1043902 1574041..1574433 1 NC_002947.3 similar to GP:5091484, and GP:5091484; identified by sequence similarity; 4-carboxymuconolactone decarboxylase 1574433 pcaC 1043902 pcaC Pseudomonas putida KT2440 4-carboxymuconolactone decarboxylase NP_743540.1 1574041 D 160488 CDS NP_743541.1 26988116 1041960 complement(1574486..1575010) 1 NC_002947.3 similar to GP:5091483, and GP:5091483; identified by sequence similarity; hypothetical protein 1575010 1041960 PP_1382 Pseudomonas putida KT2440 hypothetical protein NP_743541.1 1574486 R 160488 CDS NP_743542.1 26988117 1043913 complement(1575220..1576476) 1 NC_002947.3 similar to GP:5091482, and GP:5091482; identified by sequence similarity; BenF-like porin 1576476 1043913 PP_1383 Pseudomonas putida KT2440 BenF-like porin NP_743542.1 1575220 R 160488 CDS NP_743543.1 26988118 1041923 complement(1576789..1578243) 1 NC_002947.3 similar to GP:5091481, and GP:5091481; identified by sequence similarity; NodT family RND efflux system outer membrane lipoprotein 1578243 ttgC 1041923 ttgC Pseudomonas putida KT2440 NodT family RND efflux system outer membrane lipoprotein NP_743543.1 1576789 R 160488 CDS NP_743544.1 26988119 1041744 complement(1578240..1581392) 1 NC_002947.3 similar to GP:3319233, and GP:3319233; identified by sequence similarity; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 1581392 ttgB 1041744 ttgB Pseudomonas putida KT2440 hydrophobe/amphiphile efflux-1 (HAE1) family transporter NP_743544.1 1578240 R 160488 CDS NP_743545.1 26988120 1041938 complement(1581396..1582550) 1 NC_002947.3 similar to GP:5091480, and GP:5091480; identified by sequence similarity; RND family efflux transporter MFP subunit 1582550 ttgA 1041938 ttgA Pseudomonas putida KT2440 RND family efflux transporter MFP subunit NP_743545.1 1581396 R 160488 CDS NP_743546.1 26988121 1042410 1582808..1583440 1 NC_002947.3 similar to GP:8163734, and GP:13183097; identified by sequence similarity; TetR family transcriptional regulator 1583440 ttgR 1042410 ttgR Pseudomonas putida KT2440 TetR family transcriptional regulator NP_743546.1 1582808 D 160488 CDS NP_743547.1 26988122 1046139 complement(1583558..1585009) 1 NC_002947.3 similar to GP:6002943; identified by sequence similarity; EmrB/QacA family drug resistance transporter 1585009 1046139 PP_1388 Pseudomonas putida KT2440 EmrB/QacA family drug resistance transporter NP_743547.1 1583558 R 160488 CDS NP_743548.1 26988123 1041934 1585385..1586260 1 NC_002947.3 carboxyphosphonoenolpyruvate phosphonomutase 1586260 1041934 PP_1389 Pseudomonas putida KT2440 carboxyphosphonoenolpyruvate phosphonomutase NP_743548.1 1585385 D 160488 CDS NP_743549.1 26988124 1041939 complement(1586280..1586462) 1 NC_002947.3 hypothetical protein 1586462 1041939 PP_1390 Pseudomonas putida KT2440 hypothetical protein NP_743549.1 1586280 R 160488 CDS NP_743550.1 26988125 1043922 complement(1586493..1587401) 1 NC_002947.3 similar to GP:9945879; identified by sequence similarity; LysR family transcriptional regulator 1587401 1043922 PP_1391 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_743550.1 1586493 R 160488 CDS NP_743551.1 26988126 1043879 1587585..1588199 1 NC_002947.3 identified by match to PFAM protein family HMM PF02254; NAD-dependent epimerase/dehydratase 1588199 1043879 PP_1392 Pseudomonas putida KT2440 NAD-dependent epimerase/dehydratase NP_743551.1 1587585 D 160488 CDS NP_743552.1 26988127 1043884 complement(1588219..1589094) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 1589094 1043884 PP_1393 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_743552.1 1588219 R 160488 CDS NP_743553.1 26988128 1043901 1589208..1590845 1 NC_002947.3 similar to GB:M36340, GB:M84326, SP:P16587, SP:P32889, PID:178156, PID:178164, and PID:178983; identified by sequence similarity; hypothetical protein 1590845 1043901 PP_1394 Pseudomonas putida KT2440 hypothetical protein NP_743553.1 1589208 D 160488 CDS NP_743554.1 26988129 1041904 complement(1590969..1591889) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 1591889 1041904 PP_1395 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_743554.1 1590969 R 160488 CDS NP_743555.1 26988130 1043880 1592092..1592385 1 NC_002947.3 similar to GP:9948055; identified by sequence similarity; antibiotic biosynthesis monooxygenase 1592385 1043880 PP_1396 Pseudomonas putida KT2440 antibiotic biosynthesis monooxygenase NP_743555.1 1592092 D 160488 CDS NP_743556.1 26988131 1042409 1592402..1592668 1 NC_002947.3 hypothetical protein 1592668 1042409 PP_1397 Pseudomonas putida KT2440 hypothetical protein NP_743556.1 1592402 D 160488 CDS NP_743557.1 26988132 1043914 complement(1592669..1593274) 1 NC_002947.3 similar to GP:10174898, and GP:15074361; identified by sequence similarity; hypothetical protein 1593274 1043914 PP_1398 Pseudomonas putida KT2440 hypothetical protein NP_743557.1 1592669 R 160488 CDS NP_743558.1 26988133 1043909 complement(1593394..1593900) 1 NC_002947.3 hypothetical protein 1593900 1043909 PP_1399 Pseudomonas putida KT2440 hypothetical protein NP_743558.1 1593394 R 160488 CDS NP_743559.1 26988134 1042608 complement(1594099..1595418) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00083; metabolite/H+ symportermajor facilitator superfamily metabolite/H+ symporter 1595418 1042608 PP_1400 Pseudomonas putida KT2440 metabolite/H+ symportermajor facilitator superfamily metabolite/H+ symporter NP_743559.1 1594099 R 160488 CDS NP_743560.1 26988135 1041970 complement(1595672..1597006) 1 NC_002947.3 similar to GB:X14046, SP:P11049, and PID:29794; identified by sequence similarity; Fis family transcriptional regulator 1597006 dctD 1041970 dctD Pseudomonas putida KT2440 Fis family transcriptional regulator NP_743560.1 1595672 R 160488 CDS NP_743561.1 26988136 1043290 complement(1597000..1598757) 1 NC_002947.3 similar to SP:P13633; identified by sequence similarity; integral membrane sensor signal transduction histidine kinase 1598757 dctB 1043290 dctB Pseudomonas putida KT2440 integral membrane sensor signal transduction histidine kinase NP_743561.1 1597000 R 160488 CDS NP_743562.1 26988137 1043899 complement(1598888..1601179) 1 NC_002947.3 similar to GB:K03192, and PID:181322; identified by sequence similarity; beta-glucosidase 1601179 bglX 1043899 bglX Pseudomonas putida KT2440 beta-glucosidase NP_743562.1 1598888 R 160488 CDS NP_743563.1 26988138 1041587 1601366..1601983 1 NC_002947.3 similar to GP:14024253, GB:U11702, and PID:510692; identified by sequence similarity; hypothetical protein 1601983 1041587 PP_1404 Pseudomonas putida KT2440 hypothetical protein NP_743563.1 1601366 D 160488 CDS NP_743564.1 26988139 1046137 complement(1601916..1603370) 1 NC_002947.3 hypothetical protein 1603370 1046137 PP_1405 Pseudomonas putida KT2440 hypothetical protein NP_743564.1 1601916 R 160488 CDS NP_743565.1 26988140 1046134 complement(1603397..1604407) 1 NC_002947.3 hypothetical protein 1604407 1046134 PP_1406 Pseudomonas putida KT2440 hypothetical protein NP_743565.1 1603397 R 160488 CDS NP_743566.1 26988141 1046122 complement(1604540..1606246) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00916; sulfate transporter 1606246 1046122 PP_1407 Pseudomonas putida KT2440 sulfate transporter NP_743566.1 1604540 R 160488 CDS NP_743567.1 26988142 1046114 complement(1606642..1607529) 1 NC_002947.3 similar to GP:3551793, and GP:3551793; identified by sequence similarity; alpha/beta hydrolase 1607529 phaG 1046114 phaG Pseudomonas putida KT2440 alpha/beta hydrolase NP_743567.1 1606642 R 160488 CDS NP_743568.1 26988143 1046109 complement(1608574..1608807) 1 NC_002947.3 hypothetical protein 1608807 1046109 PP_1410 Pseudomonas putida KT2440 hypothetical protein NP_743568.1 1608574 R 160488 CDS NP_743569.1 26988144 1046106 complement(1608779..1610260) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00990; diguanylate cyclase 1610260 1046106 PP_1411 Pseudomonas putida KT2440 diguanylate cyclase NP_743569.1 1608779 R 160488 CDS NP_743570.1 26988145 1046103 complement(1610967..1612073) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00378; enoyl-CoA hydratase 1612073 1046103 PP_1412 Pseudomonas putida KT2440 enoyl-CoA hydratase NP_743570.1 1610967 R 160488 CDS NP_743571.1 26988146 1046099 1612200..1612892 1 NC_002947.3 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 1612892 ung 1046099 ung Pseudomonas putida KT2440 uracil-DNA glycosylase NP_743571.1 1612200 D 160488 CDS NP_743572.1 26988147 1045972 complement(1612919..1614601) 1 NC_002947.3 similar to GB:M94964, PID:531810, and SP:P45602; identified by sequence similarity; 5`-nucleotidase 1614601 ushA 1045972 ushA Pseudomonas putida KT2440 5`-nucleotidase NP_743572.1 1612919 R 160488 CDS NP_743573.1 26988148 1045918 complement(1614692..1615747) 1 NC_002947.3 similar to GP:3164104; identified by sequence similarity; hypothetical protein 1615747 1045918 PP_1415 Pseudomonas putida KT2440 hypothetical protein NP_743573.1 1614692 R 160488 CDS NP_743574.1 26988149 1045917 complement(1615740..1617254) 1 NC_002947.3 similar to GP:11128404; identified by sequence similarity; tricarboxylate transport protein TctA 1617254 1045917 PP_1416 Pseudomonas putida KT2440 tricarboxylate transport protein TctA NP_743574.1 1615740 R 160488 CDS NP_743575.1 26988150 1045878 complement(1617256..1617741) 1 NC_002947.3 similar to GP:11128403; identified by sequence similarity; tricarboxylate transport protein TctB 1617741 1045878 PP_1417 Pseudomonas putida KT2440 tricarboxylate transport protein TctB NP_743575.1 1617256 R 160488 CDS NP_743576.1 26988151 1045876 complement(1617914..1618894) 1 NC_002947.3 similar to GP:11128402; identified by sequence similarity; tricarboxylate transport protein TctC 1618894 1045876 PP_1418 Pseudomonas putida KT2440 tricarboxylate transport protein TctC NP_743576.1 1617914 R 160488 CDS NP_743577.1 26988152 1045868 complement(1618941..1620230) 1 NC_002947.3 similar to GP:9946642; identified by sequence similarity; porin 1620230 1045868 PP_1419 Pseudomonas putida KT2440 porin NP_743577.1 1618941 R 160488 CDS NP_743578.1 26988153 1045866 1620431..1621102 1 NC_002947.3 identified by match to PFAM protein family HMM PF00072; winged helix family two component transcriptional regulator 1621102 tctD 1045866 tctD Pseudomonas putida KT2440 winged helix family two component transcriptional regulator NP_743578.1 1620431 D 160488 CDS NP_743579.1 26988154 1045863 1621083..1622474 1 NC_002947.3 similar to GP:9946644, GP:9946644, and GP:11128400; identified by sequence similarity; integral membrane sensor signal transduction histidine kinase 1622474 1045863 PP_1421 Pseudomonas putida KT2440 integral membrane sensor signal transduction histidine kinase NP_743579.1 1621083 D 160488 CDS NP_743580.1 26988155 1045862 complement(1622540..1623352) 1 NC_002947.3 signal transduction protein 1623352 1045862 PP_1422 Pseudomonas putida KT2440 signal transduction protein NP_743580.1 1622540 R 160488 CDS NP_743581.1 26988156 1045861 complement(1623402..1624343) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01571; hypothetical protein 1624343 1045861 PP_1423 Pseudomonas putida KT2440 hypothetical protein NP_743581.1 1623402 R 160488 CDS NP_743582.1 26988157 1045860 1624477..1624731 1 NC_002947.3 identified by match to PFAM protein family HMM PF03937; hypothetical protein 1624731 1045860 PP_1424 Pseudomonas putida KT2440 hypothetical protein NP_743582.1 1624477 D 160488 CDS NP_743583.1 26988158 1045858 1624715..1625173 1 NC_002947.3 hypothetical protein 1625173 1045858 PP_1425 Pseudomonas putida KT2440 hypothetical protein NP_743583.1 1624715 D 160488 CDS NP_743584.1 26988159 1045857 complement(1625230..1626834) 1 NC_002947.3 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 1626834 nadB 1045857 nadB Pseudomonas putida KT2440 L-aspartate oxidase NP_743584.1 1625230 R 160488 CDS NP_743585.1 26988160 1045855 1627269..1627850 1 NC_002947.3 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor regulates genes involved in alginate biosynthesis; RNA polymerase sigma factor AlgU 1627850 algU 1045855 algU Pseudomonas putida KT2440 RNA polymerase sigma factor AlgU NP_743585.1 1627269 D 160488 CDS NP_743586.1 26988161 1045853 1627884..1628474 1 NC_002947.3 identified by match to PFAM protein family HMM PF03873; anti sigma-E protein, RseA 1628474 mucA 1045853 mucA Pseudomonas putida KT2440 anti sigma-E protein, RseA NP_743586.1 1627884 D 160488 CDS NP_743587.1 26988162 1045852 1628487..1629452 1 NC_002947.3 identified by match to PFAM protein family HMM PF03888; sigma E regulatory protein MucB/RseB 1629452 algN 1045852 algN Pseudomonas putida KT2440 sigma E regulatory protein MucB/RseB NP_743587.1 1628487 D 160488 CDS NP_743588.1 26988163 1045851 1629584..1631062 1 NC_002947.3 similar to GB:Z31695, PID:469144, GB:Z31695, and PID:469144; identified by sequence similarity; protease Do 1631062 algY 1045851 algY Pseudomonas putida KT2440 protease Do NP_743588.1 1629584 D 160488 CDS NP_743589.1 26988164 1045850 1631243..1633042 1 NC_002947.3 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1633042 lepA 1045850 lepA Pseudomonas putida KT2440 GTP-binding protein LepA NP_743589.1 1631243 D 160488 CDS NP_743590.1 26988165 1045849 1633048..1633902 1 NC_002947.3 similar to GB:L19182, PID:307151, GB:L19182, and PID:307151; identified by sequence similarity; signal peptidase I 1633902 lepB 1045849 lepB Pseudomonas putida KT2440 signal peptidase I NP_743590.1 1633048 D 160488 CDS NP_743591.1 26988166 1045848 1634066..1634755 1 NC_002947.3 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1634755 rnc 1045848 rnc Pseudomonas putida KT2440 ribonuclease III NP_743591.1 1634066 D 160488 CDS NP_743592.1 26988167 1045846 1634742..1635650 1 NC_002947.3 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1635650 era 1045846 era Pseudomonas putida KT2440 GTP-binding protein Era NP_743592.1 1634742 D 160488 CDS NP_743593.1 26988168 1045843 1635820..1636503 1 NC_002947.3 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 1636503 recO 1045843 recO Pseudomonas putida KT2440 DNA repair protein RecO NP_743593.1 1635820 D 160488 CDS NP_743594.1 26988169 1045842 1636547..1637287 1 NC_002947.3 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1637287 pdxJ 1045842 pdxJ Pseudomonas putida KT2440 pyridoxine 5'-phosphate synthase NP_743594.1 1636547 D 160488 CDS NP_743595.1 26988170 1045840 complement(1637353..1638735) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01386; heavy metal sensor histidine kinase 1638735 1045840 PP_1437 Pseudomonas putida KT2440 heavy metal sensor histidine kinase NP_743595.1 1637353 R 160488 CDS NP_743596.1 26988171 1045839 complement(1638732..1639406) 1 NC_002947.3 similar to GP:12484568; identified by sequence similarity; DNA-binding response regulator CzrR 1639406 czrR-2 1045839 czrR-2 Pseudomonas putida KT2440 DNA-binding response regulator CzrR NP_743596.1 1638732 R 160488 CDS NP_743597.1 26988172 1045835 1639717..1639920 1 NC_002947.3 hypothetical protein 1639920 1045835 PP_1439 Pseudomonas putida KT2440 hypothetical protein NP_743597.1 1639717 D 160488 CDS NP_743598.1 26988173 1045833 complement(1639990..1640946) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00452; methyltransferase 1640946 1045833 PP_1440 Pseudomonas putida KT2440 methyltransferase NP_743598.1 1639990 R 160488 CDS NP_743599.1 26988174 1045831 complement(1640943..1641686) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00740; methyltransferase 1641686 1045831 PP_1441 Pseudomonas putida KT2440 methyltransferase NP_743599.1 1640943 R 160488 CDS NP_743600.1 26988175 1045828 complement(1641776..1642348) 1 NC_002947.3 similar to GP:9946667; identified by sequence similarity; hypothetical protein 1642348 1045828 PP_1442 Pseudomonas putida KT2440 hypothetical protein NP_743600.1 1641776 R 160488 CDS NP_743601.1 26988176 1045825 complement(1642320..1644737) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00004; ATP-dependent protease La 1644737 lon-1 1045825 lon-1 Pseudomonas putida KT2440 ATP-dependent protease La NP_743601.1 1642320 R 160488 CDS NP_743602.1 26988177 1045820 complement(1644941..1647352) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01011; glucose dehydrogenase 1647352 gcd 1045820 gcd Pseudomonas putida KT2440 glucose dehydrogenase NP_743602.1 1644941 R 160488 CDS NP_743603.1 26988178 1045819 complement(1647383..1648717) 1 NC_002947.3 similar to GB:M26683, GB:X60001, GB:S71513, GB:X14768, GB:M37719, GB:M24545, GB:M30816, GB:M31625, GB:M31626, GB:M28223, GB:M28224, GB:M28225, GB:M28226, GB:D26087, SP:P13500, GB:M26683, GB:X60001, GB:S71513, GB:X14768, GB:M37719, GB:M24545, GB:M30816, GB:M31625, GB:M31626, GB:M28223, GB:M28224, GB:M28225, GB:M28226, GB:D26087, and SP:P13500; identified by sequence similarity; porin 1648717 oprB-2 1045819 oprB-2 Pseudomonas putida KT2440 porin NP_743603.1 1647383 R 160488 CDS NP_743604.1 26988179 1045816 complement(1649013..1651055) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00593; TonB-dependent receptor 1651055 1045816 PP_1446 Pseudomonas putida KT2440 TonB-dependent receptor NP_743604.1 1649013 R 160488 CDS NP_743605.1 26988180 1045814 1651192..1651440 1 NC_002947.3 hypothetical protein 1651440 1045814 PP_1447 Pseudomonas putida KT2440 hypothetical protein NP_743605.1 1651192 D 160488 CDS NP_743606.1 26988181 1045810 1651442..1652077 1 NC_002947.3 similar to GP:4726002; identified by sequence similarity; hypothetical protein 1652077 1045810 PP_1448 Pseudomonas putida KT2440 hypothetical protein NP_743606.1 1651442 D 160488 CDS NP_743607.1 26988182 1045808 complement(1652238..1656764) 1 NC_002947.3 similar to GP:7741588, and GP:7741588; identified by sequence similarity; filamentous hemagglutinin 1656764 1045808 PP_1449 Pseudomonas putida KT2440 filamentous hemagglutinin NP_743607.1 1652238 R 160488 CDS NP_743608.1 26988183 1045807 complement(1656792..1658489) 1 NC_002947.3 similar to GB:J02677, SP:P05102, and PID:148949; identified by sequence similarity; TPS family activation/secretion protein 1658489 1045807 PP_1450 Pseudomonas putida KT2440 TPS family activation/secretion protein NP_743608.1 1656792 R 160488 CDS NP_743609.1 26988184 1045804 complement(1658635..1659189) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03734; hypothetical protein 1659189 1045804 PP_1451 Pseudomonas putida KT2440 hypothetical protein NP_743609.1 1658635 R 160488 CDS NP_743610.1 26988185 1045803 complement(1659212..1659763) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00293; NUDIX hydrolase 1659763 1045803 PP_1452 Pseudomonas putida KT2440 NUDIX hydrolase NP_743610.1 1659212 R 160488 CDS NP_743611.1 26988186 1045802 1659887..1660486 1 NC_002947.3 identified by match to PFAM protein family HMM PF00293; NUDIX hydrolase 1660486 1045802 PP_1453 Pseudomonas putida KT2440 NUDIX hydrolase NP_743611.1 1659887 D 160488 CDS NP_743612.1 26988187 1045797 1660530..1661054 1 NC_002947.3 similar to GB:J00124, GB:X59475, GB:M28646, SP:P02533, and PID:386848; identified by sequence similarity; anhydrase 3 protein 1661054 1045797 PP_1454 Pseudomonas putida KT2440 anhydrase 3 protein NP_743612.1 1660530 D 160488 CDS NP_743613.1 26988188 1045793 1661023..1661247 1 NC_002947.3 similar to GP:9949921; identified by sequence similarity; hypothetical protein 1661247 1045793 PP_1455 Pseudomonas putida KT2440 hypothetical protein NP_743613.1 1661023 D 160488 CDS NP_743614.1 26988189 1045791 1661325..1661792 1 NC_002947.3 identified by match to PFAM protein family HMM PF02592; hypothetical protein 1661792 1045791 PP_1456 Pseudomonas putida KT2440 hypothetical protein NP_743614.1 1661325 D 160488 CDS NP_743615.1 26988190 1045790 1661869..1663050 1 NC_002947.3 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 1663050 purT 1045790 purT Pseudomonas putida KT2440 phosphoribosylglycinamide formyltransferase 2 NP_743615.1 1661869 D 160488 CDS NP_743616.1 26988191 1045788 complement(1663088..1664386) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03605; metabolite-proton symporter 1664386 1045788 PP_1458 Pseudomonas putida KT2440 metabolite-proton symporter NP_743616.1 1663088 R 160488 CDS NP_743617.1 26988192 1045786 complement(1664658..1665863) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03471; hypothetical protein 1665863 1045786 PP_1459 Pseudomonas putida KT2440 hypothetical protein NP_743617.1 1664658 R 160488 CDS NP_743618.1 26988193 1045782 complement(1665873..1666724) 1 NC_002947.3 similar to GP:9949915; identified by sequence similarity; cytochrome c assembly protein 1666724 1045782 PP_1460 Pseudomonas putida KT2440 cytochrome c assembly protein NP_743618.1 1665873 R 160488 CDS NP_743619.1 26988194 1045779 1666755..1668371 1 NC_002947.3 identified by match to PFAM protein family HMM PF00448; signal recognition particle protein 1668371 ffh 1045779 ffh Pseudomonas putida KT2440 signal recognition particle protein NP_743619.1 1666755 D 160488 CDS NP_743620.2 161378134 1045775 1668631..1668882 1 NC_002947.3 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1668882 rpsP 1045775 rpsP Pseudomonas putida KT2440 30S ribosomal protein S16 NP_743620.2 1668631 D 160488 CDS NP_743621.1 26988196 1045770 1668888..1669424 1 NC_002947.3 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1669424 rimM 1045770 rimM Pseudomonas putida KT2440 16S rRNA-processing protein RimM NP_743621.1 1668888 D 160488 CDS NP_743622.1 26988197 1045768 1669428..1670180 1 NC_002947.3 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1670180 trmD 1045768 trmD Pseudomonas putida KT2440 tRNA (guanine-N(1)-)-methyltransferase NP_743622.1 1669428 D 160488 CDS NP_743623.1 26988198 1045765 1670223..1670573 1 NC_002947.3 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1670573 rplS 1045765 rplS Pseudomonas putida KT2440 50S ribosomal protein L19 NP_743623.1 1670223 D 160488 CDS NP_743624.1 26988199 1045764 1670668..1671075 1 NC_002947.3 identified by match to PFAM protein family HMM PF01662; thioesterase 1671075 1045764 PP_1466 Pseudomonas putida KT2440 thioesterase NP_743624.1 1670668 D 160488 CDS NP_743625.1 26988200 1045762 complement(1671079..1672884) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04290; sodium/hydrogen exchanger 1672884 1045762 PP_1467 Pseudomonas putida KT2440 sodium/hydrogen exchanger NP_743625.1 1671079 R 160488 CDS NP_743626.1 26988201 1045761 1672953..1673849 1 NC_002947.3 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 1673849 xerD 1045761 xerD Pseudomonas putida KT2440 site-specific tyrosine recombinase XerD NP_743626.1 1672953 D 160488 CDS NP_743627.1 26988202 1045760 1673964..1674746 1 NC_002947.3 similar to GP:3135321, GB:Z11559, GB:M58510, SP:P21399, PID:33963, and PID:896473; identified by sequence similarity; thiol:disulfide interchange protein DsbC 1674746 dsbC 1045760 dsbC Pseudomonas putida KT2440 thiol:disulfide interchange protein DsbC NP_743627.1 1673964 D 160488 CDS NP_743628.1 26988203 1045758 1674830..1676134 1 NC_002947.3 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 1676134 hom 1045758 hom Pseudomonas putida KT2440 homoserine dehydrogenase NP_743628.1 1674830 D 160488 CDS NP_743629.1 26988204 1045757 1676194..1677603 1 NC_002947.3 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1677603 thrC 1045757 thrC Pseudomonas putida KT2440 threonine synthase NP_743629.1 1676194 D 160488 CDS NP_743630.1 26988205 1045755 complement(1677569..1678216) 1 NC_002947.3 hypothetical protein 1678216 1045755 PP_1472 Pseudomonas putida KT2440 hypothetical protein NP_743630.1 1677569 R 160488 CDS NP_743631.1 26988206 1045753 1678224..1678514 1 NC_002947.3 similar to GP:9948826; identified by sequence similarity; hypothetical protein 1678514 1045753 PP_1473 Pseudomonas putida KT2440 hypothetical protein NP_743631.1 1678224 D 160488 CDS NP_743632.1 26988207 1045752 complement(1678701..1679576) 1 NC_002947.3 hypothetical protein 1679576 1045752 PP_1474 Pseudomonas putida KT2440 hypothetical protein NP_743632.1 1678701 R 160488 CDS NP_743633.1 26988208 1045750 complement(1679597..1680796) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02515; L-carnitine dehydratase/bile acid-inducible protein F 1680796 1045750 PP_1475 Pseudomonas putida KT2440 L-carnitine dehydratase/bile acid-inducible protein F NP_743633.1 1679597 R 160488 CDS NP_743634.1 26988209 1045746 1680927..1681469 1 NC_002947.3 similar to GP:9949892; identified by sequence similarity; YaeQ family protein 1681469 1045746 PP_1476 Pseudomonas putida KT2440 YaeQ family protein NP_743634.1 1680927 D 160488 CDS NP_743635.1 26988210 1045743 1681478..1683187 1 NC_002947.3 similar to GB:D00173, GB:S46963, SP:P11712, SP:P11713, SP:P33259, SP:P33261, PID:181362, PID:181364, PID:181366, and PID:219571; identified by sequence similarity; single-stranded-DNA-specific exonuclease RecJ 1683187 recJ 1045743 recJ Pseudomonas putida KT2440 single-stranded-DNA-specific exonuclease RecJ NP_743635.1 1681478 D 160488 CDS NP_743636.1 26988211 1045742 1683418..1684524 1 NC_002947.3 similar to GP:6049281; identified by sequence similarity; NADH:flavin oxidoreductase 1684524 1045742 PP_1478 Pseudomonas putida KT2440 NADH:flavin oxidoreductase NP_743636.1 1683418 D 160488 CDS NP_743637.1 26988212 1045734 complement(1684535..1684867) 1 NC_002947.3 similar to GP:3603326; identified by sequence similarity; hicB protein 1684867 hicB-1 1045734 hicB-1 Pseudomonas putida KT2440 hicB protein NP_743637.1 1684535 R 160488 CDS NP_743638.1 26988213 1045732 complement(1684864..1685118) 1 NC_002947.3 similar to GP:3603340, and GP:3603340; identified by sequence similarity; hicA protein 1685118 hicA-1 1045732 hicA-1 Pseudomonas putida KT2440 hicA protein NP_743638.1 1684864 R 160488 CDS NP_743639.1 26988214 1045730 complement(1685350..1686774) 1 NC_002947.3 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase 1686774 1045730 PP_1481 Pseudomonas putida KT2440 gamma-aminobutyraldehyde dehydrogenase NP_743639.1 1685350 R 160488 CDS NP_743640.1 26988215 1045726 complement(1686792..1687598) 1 NC_002947.3 similar to SP:P37640, PID:466657, GB:U00096, and PID:1789937; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein 1687598 1045726 PP_1482 Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_743640.1 1686792 R 160488 CDS NP_743641.1 26988216 1045724 complement(1687588..1688499) 1 NC_002947.3 similar to SP:P37640, PID:466657, GB:U00096, and PID:1789937; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein 1688499 1045724 PP_1483 Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_743641.1 1687588 R 160488 CDS NP_743642.1 26988217 1045718 complement(1688501..1689532) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00968; spermidine/putrescine ABC transporter ATPase 1689532 1045718 PP_1484 Pseudomonas putida KT2440 spermidine/putrescine ABC transporter ATPase NP_743642.1 1688501 R 160488 CDS NP_743643.1 26988218 1045717 1689563..1689697 1 NC_002947.3 hypothetical protein 1689697 1045717 PP_1485 Pseudomonas putida KT2440 hypothetical protein NP_743643.1 1689563 D 160488 CDS NP_743644.1 26988219 1045715 complement(1689681..1690826) 1 NC_002947.3 similar to SP:P37081, GB:X66059, and PID:43941; identified by sequence similarity; polyamine ABC transporter substrate-binding protein 1690826 1045715 PP_1486 Pseudomonas putida KT2440 polyamine ABC transporter substrate-binding protein NP_743644.1 1689681 R 160488 CDS NP_743645.1 26988220 1045709 1691049..1691729 1 NC_002947.3 similar to GP:9949877; identified by sequence similarity; hypothetical protein 1691729 1045709 PP_1487 Pseudomonas putida KT2440 hypothetical protein NP_743645.1 1691049 D 160488 CDS NP_743646.1 26988221 1045707 1691900..1693522 1 NC_002947.3 identified by match to PFAM protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer 1693522 1045707 PP_1488 Pseudomonas putida KT2440 methyl-accepting chemotaxis sensory transducer NP_743646.1 1691900 D 160488 CDS NP_743647.1 26988222 1045703 1693528..1694034 1 NC_002947.3 identified by match to PFAM protein family HMM PF01584; chemotaxis protein CheW 1694034 1045703 PP_1489 Pseudomonas putida KT2440 chemotaxis protein CheW NP_743647.1 1693528 D 160488 CDS NP_743648.1 26988223 1045696 1694031..1695305 1 NC_002947.3 identified by match to PFAM protein family HMM PF00515; methyltransferase, CheR-like 1695305 1045696 PP_1490 Pseudomonas putida KT2440 methyltransferase, CheR-like NP_743648.1 1694031 D 160488 CDS NP_743649.1 26988224 1045692 1695320..1695967 1 NC_002947.3 identified by match to PFAM protein family HMM PF01584; chemotaxis protein CheW 1695967 1045692 PP_1491 Pseudomonas putida KT2440 chemotaxis protein CheW NP_743649.1 1695320 D 160488 CDS NP_743650.1 26988225 1045691 1695964..1698252 1 NC_002947.3 identified by match to PFAM protein family HMM PF00072; chemotaxis protein CheA 1698252 1045691 PP_1492 Pseudomonas putida KT2440 chemotaxis protein CheA NP_743650.1 1695964 D 160488 CDS NP_743651.1 26988226 1045676 1698249..1699262 1 NC_002947.3 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1699262 1045676 PP_1493 Pseudomonas putida KT2440 chemotaxis-specific methylesterase NP_743651.1 1698249 D 160488 CDS NP_743652.1 26988227 1045673 1699311..1700318 1 NC_002947.3 identified by match to PFAM protein family HMM PF00990; response regulator/GGDEF domain-containing protein 1700318 1045673 PP_1494 Pseudomonas putida KT2440 response regulator/GGDEF domain-containing protein NP_743652.1 1699311 D 160488 CDS NP_743653.1 26988228 1045667 1701645..1703147 1 NC_002947.3 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1703147 lysS 1045667 lysS Pseudomonas putida KT2440 lysyl-tRNA synthetase NP_743653.1 1701645 D 160488 CDS NP_743654.1 26988229 1045663 1703314..1704030 1 NC_002947.3 identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 1704030 1045663 PP_1497 Pseudomonas putida KT2440 TetR family transcriptional regulator NP_743654.1 1703314 D 160488 CDS NP_743655.1 26988230 1045567 1704061..1704609 1 NC_002947.3 similar to GP:9949863; identified by sequence similarity; lipoprotein 1704609 1045567 PP_1498 Pseudomonas putida KT2440 lipoprotein NP_743655.1 1704061 D 160488 CDS NP_743656.1 26988231 1045522 1704632..1705960 1 NC_002947.3 similar to GP:9949862; identified by sequence similarity; hypothetical protein 1705960 1045522 PP_1499 Pseudomonas putida KT2440 hypothetical protein NP_743656.1 1704632 D 160488 CDS NP_743657.1 26988232 1045520 1705932..1706855 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01738; lipoprotein 1706855 1045520 PP_1500 Pseudomonas putida KT2440 lipoprotein NP_743657.1 1705932 D 160488 CDS NP_743658.1 26988233 1045519 1706852..1707178 1 NC_002947.3 hypothetical protein 1707178 1045519 PP_1501 Pseudomonas putida KT2440 hypothetical protein NP_743658.1 1706852 D 160488 CDS NP_743659.1 26988234 1045518 complement(1707320..1708111) 1 NC_002947.3 similar to GP:9949856; identified by sequence similarity; OmpA/MotB domain-containing protein 1708111 1045518 PP_1502 Pseudomonas putida KT2440 OmpA/MotB domain-containing protein NP_743659.1 1707320 R 160488 CDS NP_743660.1 26988235 1045516 complement(1708162..1708632) 1 NC_002947.3 hypothetical protein 1708632 1045516 PP_1503 Pseudomonas putida KT2440 hypothetical protein NP_743660.1 1708162 R 160488 CDS NP_743661.1 26988236 1045515 complement(1708852..1709229) 1 NC_002947.3 similar to GP:9949852; identified by sequence similarity; hypothetical protein 1709229 1045515 PP_1504 Pseudomonas putida KT2440 hypothetical protein NP_743661.1 1708852 R 160488 CDS NP_743662.1 26988237 1045514 1709378..1712005 1 NC_002947.3 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 1712005 ppc 1045514 ppc Pseudomonas putida KT2440 phosphoenolpyruvate carboxylase NP_743662.1 1709378 D 160488 CDS NP_743663.1 26988238 1045513 1712263..1712913 1 NC_002947.3 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1712913 adk 1045513 adk Pseudomonas putida KT2440 adenylate kinase NP_743663.1 1712263 D 160488 CDS NP_743664.1 26988239 1045512 1713053..1713727 1 NC_002947.3 similar to GP:9949849, and GP:9949849; identified by sequence similarity; hypothetical protein 1713727 1045512 PP_1507 Pseudomonas putida KT2440 hypothetical protein NP_743664.1 1713053 D 160488 CDS NP_743665.1 26988240 1045511 1713829..1714149 1 NC_002947.3 similar to GP:9949848; identified by sequence similarity; hypothetical protein 1714149 1045511 PP_1508 Pseudomonas putida KT2440 hypothetical protein NP_743665.1 1713829 D 160488 CDS NP_743666.1 26988241 1045510 1714153..1715022 1 NC_002947.3 similar to GP:9949847; identified by sequence similarity; hypothetical protein 1715022 1045510 PP_1509 Pseudomonas putida KT2440 hypothetical protein NP_743666.1 1714153 D 160488 CDS NP_743667.1 26988242 1045509 1715051..1715881 1 NC_002947.3 similar to SP:P37660, PID:466678, GB:U00096, and PID:1789961; identified by sequence similarity; carboxyvinyl-carboxyphosphonate phosphorylmutase 1715881 1045509 PP_1510 Pseudomonas putida KT2440 carboxyvinyl-carboxyphosphonate phosphorylmutase NP_743667.1 1715051 D 160488 CDS NP_743668.1 26988243 1045507 1715881..1716570 1 NC_002947.3 similar to GP:9949844; identified by sequence similarity; extensin 1716570 1045507 PP_1511 Pseudomonas putida KT2440 extensin NP_743668.1 1715881 D 160488 CDS NP_743669.1 26988244 1045506 complement(1716573..1717193) 1 NC_002947.3 hypothetical protein 1717193 1045506 PP_1512 Pseudomonas putida KT2440 hypothetical protein NP_743669.1 1716573 R 160488 CDS NP_743670.1 26988245 1045505 1717298..1718074 1 NC_002947.3 similar to GP:9949843; identified by sequence similarity; hypothetical protein 1718074 1045505 PP_1513 Pseudomonas putida KT2440 hypothetical protein NP_743670.1 1717298 D 160488 CDS NP_743671.1 26988246 1045503 1718267..1719235 1 NC_002947.3 similar to GP:2950328; identified by sequence similarity; hypothetical protein 1719235 1045503 PP_1514 Pseudomonas putida KT2440 hypothetical protein NP_743671.1 1718267 D 160488 CDS NP_743672.1 26988247 1045501 complement(1719365..1720006) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 1720006 1045501 PP_1515 Pseudomonas putida KT2440 TetR family transcriptional regulator NP_743672.1 1719365 R 160488 CDS NP_743673.1 26988248 1045500 1720257..1721357 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01730; RND family efflux transporter MFP subunit 1721357 1045500 PP_1516 Pseudomonas putida KT2440 RND family efflux transporter MFP subunit NP_743673.1 1720257 D 160488 CDS NP_743674.1 26988249 1045498 1721364..1724429 1 NC_002947.3 identified by match to PFAM protein family HMM PF03599; acriflavin resistance protein 1724429 1045498 PP_1517 Pseudomonas putida KT2440 acriflavin resistance protein NP_743674.1 1721364 D 160488 CDS NP_743675.1 26988250 1045497 complement(1724478..1725164) 1 NC_002947.3 similar to GP:9949838; identified by sequence similarity; hypothetical protein 1725164 1045497 PP_1518 Pseudomonas putida KT2440 hypothetical protein NP_743675.1 1724478 R 160488 CDS NP_743676.1 26988251 1045496 complement(1725198..1725596) 1 NC_002947.3 lipoprotein 1725596 1045496 PP_1519 Pseudomonas putida KT2440 lipoprotein NP_743676.1 1725198 R 160488 CDS NP_743677.1 26988252 1045494 complement(1725673..1728159) 1 NC_002947.3 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 1728159 plsB 1045494 plsB Pseudomonas putida KT2440 glycerol-3-phosphate acyltransferase NP_743677.1 1725673 R 160488 CDS NP_743678.1 26988253 1045492 complement(1728229..1728369) 1 NC_002947.3 hypothetical protein 1728369 1045492 PP_1521 Pseudomonas putida KT2440 hypothetical protein NP_743678.1 1728229 R 160488 CDS NP_743679.1 26988254 1045491 1728393..1728602 1 NC_002947.3 similar to SP:P08301, and PID:45470; identified by sequence similarity; cold shock protein CspA 1728602 cspA-1 1045491 cspA-1 Pseudomonas putida KT2440 cold shock protein CspA NP_743679.1 1728393 D 160488 CDS NP_743680.1 26988255 1045490 complement(1728725..1729102) 1 NC_002947.3 similar to GP:9947083, and GP:9947083; identified by sequence similarity; hypothetical protein 1729102 1045490 PP_1523 Pseudomonas putida KT2440 hypothetical protein NP_743680.1 1728725 R 160488 CDS NP_743681.1 26988256 1045489 complement(1729120..1729932) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01209; rRNA (guanine-N(1)-)-methyltransferase 1729932 1045489 PP_1524 Pseudomonas putida KT2440 rRNA (guanine-N(1)-)-methyltransferase NP_743681.1 1729120 R 160488 CDS NP_743682.1 26988257 1045488 complement(1729932..1731083) 1 NC_002947.3 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 1731083 dapE 1045488 dapE Pseudomonas putida KT2440 succinyl-diaminopimelate desuccinylase NP_743682.1 1729932 R 160488 CDS NP_743683.1 26988258 1045487 complement(1731274..1733865) 1 NC_002947.3 similar to GP:3687658; identified by sequence similarity; beta-(1-3)-glucosyl transferase 1733865 1045487 PP_1526 Pseudomonas putida KT2440 beta-(1-3)-glucosyl transferase NP_743683.1 1731274 R 160488 CDS NP_743684.1 26988259 1045486 1733979..1734794 1 NC_002947.3 identified by match to PFAM protein family HMM PF00899; UBA/THIF-type NAD/FAD binding protein 1734794 1045486 PP_1527 Pseudomonas putida KT2440 UBA/THIF-type NAD/FAD binding protein NP_743684.1 1733979 D 160488 CDS NP_743685.1 26988260 1045485 complement(1734907..1735317) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02657; Fe-S metabolism associated SufE 1735317 1045485 PP_1528 Pseudomonas putida KT2440 Fe-S metabolism associated SufE NP_743685.1 1734907 R 160488 CDS NP_743686.1 26988261 1045484 complement(1735314..1736519) 1 NC_002947.3 similar to GP:4520378, GB:M64855, GB:S71057, GB:M64856, GB:M64857, GB:X67171, GB:X93620, SP:P01594, SP:P01596, SP:P01597, SP:P01598, SP:P01600, SP:P01602, SP:P01606, SP:P01607, SP:P01608, SP:P01609, SP:P01611, SP:P04431, SP:P04432, SP:P80362, PID:185964, PID:185966, PID:185968, PID:470556, PID:470562, PID:470576, PID:470592, PID:470596, PID:470598, PID:470600, PID:470618, PID:483882, PID:483884, PID:483886, PID:483902, PID:506423, PID:561705, PID:563650, PID:567134, PID:567136, PID:567138, PID:567146, PID:567148, PID:567150, PID:567154, PID:567158, PID:567172, PID:575258, PID:587324, PID:587326, PID:587328, PID:587330, PID:587332, PID:587334, PID:598171, PID:619427, PID:619601, PID:619602, PID:619603, PID:619615, PID:619616, PID:619624, PID:632988, PID:642240, PID:642378, PID:663000, PID:663001, PID:722540, PID:732738, PID:732746, PID:736242, PID:736244, PID:758085, PID:758589, PID:758599, PID:758601, PID:762937, PID:790811, PID:791024, PID:791036, PID:860994, PID:861002, PID:896278, PID:940528, PID:940529; cysteine sulfinate desulfinase 1736519 csdA 1045484 csdA Pseudomonas putida KT2440 cysteine sulfinate desulfinase NP_743686.1 1735314 R 160488 CDS NP_743687.1 26988262 1045483 complement(1736601..1737635) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00965; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 1737635 1045483 PP_1530 Pseudomonas putida KT2440 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase NP_743687.1 1736601 R 160488 CDS NP_743688.1 26988263 1045481 complement(1737667..1738014) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01617; arsenate reductase 1738014 1045481 PP_1531 Pseudomonas putida KT2440 arsenate reductase NP_743688.1 1737667 R 160488 CDS NP_743689.1 26988264 1045479 complement(1738082..1739188) 1 NC_002947.3 similar to GP:4520380, and GP:4520380; identified by sequence similarity; phage integrase 1739188 1045479 PP_1532 Pseudomonas putida KT2440 phage integrase NP_743689.1 1738082 R 160488 CDS NP_743690.1 26988265 1045477 complement(1739169..1739411) 1 NC_002947.3 similar to SP:P06524, GB:X02423, GB:X03933, GB:X16905, PID:154815, PID:39184, and PID:39186; identified by sequence similarity; excisionase 1739411 1045477 PP_1533 Pseudomonas putida KT2440 excisionase NP_743690.1 1739169 R 160488 CDS NP_743691.1 26988266 1045476 complement(1739445..1739762) 1 NC_002947.3 hypothetical protein 1739762 1045476 PP_1534 Pseudomonas putida KT2440 hypothetical protein NP_743691.1 1739445 R 160488 CDS NP_743692.1 26988267 1045475 complement(1739819..1740283) 1 NC_002947.3 similar to GP:5823652, and GP:2570059; identified by sequence similarity; methyltransferase 1740283 1045475 PP_1535 Pseudomonas putida KT2440 methyltransferase NP_743692.1 1739819 R 160488 CDS NP_743693.1 26988268 1045474 complement(1740298..1740681) 1 NC_002947.3 hypothetical protein 1740681 1045474 PP_1536 Pseudomonas putida KT2440 hypothetical protein NP_743693.1 1740298 R 160488 CDS NP_743694.1 26988269 1045473 complement(1740678..1740905) 1 NC_002947.3 hypothetical protein 1740905 1045473 PP_1537 Pseudomonas putida KT2440 hypothetical protein NP_743694.1 1740678 R 160488 CDS NP_743695.1 26988270 1045472 complement(1741156..1741908) 1 NC_002947.3 similar to GP:2105134; identified by sequence similarity; hypothetical protein 1741908 1045472 PP_1538 Pseudomonas putida KT2440 hypothetical protein NP_743695.1 1741156 R 160488 CDS NP_743696.1 26988271 1045470 complement(1741992..1742552) 1 NC_002947.3 hypothetical protein 1742552 1045470 PP_1539 Pseudomonas putida KT2440 hypothetical protein NP_743696.1 1741992 R 160488 CDS NP_743697.1 26988272 1045468 complement(1742872..1743096) 1 NC_002947.3 similar to GP:9949581; identified by sequence similarity; hypothetical protein 1743096 1045468 PP_1540 Pseudomonas putida KT2440 hypothetical protein NP_743697.1 1742872 R 160488 CDS NP_743698.1 26988273 1045467 complement(1743287..1744207) 1 NC_002947.3 similar to GP:4520381, and GP:4520381; identified by sequence similarity; methyltransferase 1744207 1045467 PP_1541 Pseudomonas putida KT2440 methyltransferase NP_743698.1 1743287 R 160488 CDS NP_743699.1 26988274 1045465 complement(1744274..1744870) 1 NC_002947.3 hypothetical protein 1744870 1045465 PP_1542 Pseudomonas putida KT2440 hypothetical protein NP_743699.1 1744274 R 160488 CDS NP_743700.1 26988275 1045463 complement(1745211..1745756) 1 NC_002947.3 hypothetical protein 1745756 1045463 PP_1543 Pseudomonas putida KT2440 hypothetical protein NP_743700.1 1745211 R 160488 CDS NP_743701.1 26988276 1045462 complement(1746075..1746461) 1 NC_002947.3 hypothetical protein 1746461 1045462 PP_1544 Pseudomonas putida KT2440 hypothetical protein NP_743701.1 1746075 R 160488 CDS NP_743702.1 26988277 1045461 complement(1746543..1747001) 1 NC_002947.3 hypothetical protein 1747001 1045461 PP_1545 Pseudomonas putida KT2440 hypothetical protein NP_743702.1 1746543 R 160488 CDS NP_743703.1 26988278 1045460 complement(1746998..1747267) 1 NC_002947.3 hypothetical protein 1747267 1045460 PP_1546 Pseudomonas putida KT2440 hypothetical protein NP_743703.1 1746998 R 160488 CDS NP_743704.1 26988279 1045458 1747900..1748235 1 NC_002947.3 hypothetical protein 1748235 1045458 PP_1547 Pseudomonas putida KT2440 hypothetical protein NP_743704.1 1747900 D 160488 CDS NP_743705.1 26988280 1045457 complement(1748226..1748663) 1 NC_002947.3 similar to GP:10432471, GB:U01100, PID:1220435, and PID:434023; identified by sequence similarity; hypothetical protein 1748663 1045457 PP_1548 Pseudomonas putida KT2440 hypothetical protein NP_743705.1 1748226 R 160488 CDS NP_743706.1 26988281 1045456 complement(1749380..1750231) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00717; Cro/CI family transcriptional regulator 1750231 1045456 PP_1549 Pseudomonas putida KT2440 Cro/CI family transcriptional regulator NP_743706.1 1749380 R 160488 CDS NP_743707.1 26988282 1045455 1750320..1750496 1 NC_002947.3 similar to GP:4539473; identified by sequence similarity; Cro/CI family transcriptional regulator 1750496 1045455 PP_1550 Pseudomonas putida KT2440 Cro/CI family transcriptional regulator NP_743707.1 1750320 D 160488 CDS NP_743708.1 26988283 1045454 1750638..1751492 1 NC_002947.3 similar to GP:8895171, and GP:8895171; identified by sequence similarity; phage replication protein O 1751492 1045454 PP_1551 Pseudomonas putida KT2440 phage replication protein O NP_743708.1 1750638 D 160488 CDS NP_743709.1 26988284 1045452 1751590..1752294 1 NC_002947.3 similar to GP:3294483, and SP:P07905; identified by sequence similarity; IstB domain-containing protein ATP-binding protein 1752294 1045452 PP_1552 Pseudomonas putida KT2440 IstB domain-containing protein ATP-binding protein NP_743709.1 1751590 D 160488 CDS NP_743710.1 26988285 1045451 1752297..1752593 1 NC_002947.3 similar to GP:6901638, and GP:6901638; identified by sequence similarity; hypothetical protein 1752593 1045451 PP_1553 Pseudomonas putida KT2440 hypothetical protein NP_743710.1 1752297 D 160488 CDS NP_743711.1 26988286 1045450 1752590..1753012 1 NC_002947.3 hypothetical protein 1753012 1045450 PP_1554 Pseudomonas putida KT2440 hypothetical protein NP_743711.1 1752590 D 160488 CDS NP_743712.1 26988287 1045449 1753027..1754298 1 NC_002947.3 similar to GB:M15502, SP:P07954, PID:1545996, and PID:182794; identified by sequence similarity; phage integrase 1754298 1045449 PP_1555 Pseudomonas putida KT2440 phage integrase NP_743712.1 1753027 D 160488 CDS NP_743713.1 26988288 1045447 1754295..1754615 1 NC_002947.3 similar to GP:8895178, and GP:8895178; identified by sequence similarity; hypothetical protein 1754615 1045447 PP_1556 Pseudomonas putida KT2440 hypothetical protein NP_743713.1 1754295 D 160488 CDS NP_743714.1 26988289 1045369 1754588..1754929 1 NC_002947.3 hypothetical protein 1754929 1045369 PP_1557 Pseudomonas putida KT2440 hypothetical protein NP_743714.1 1754588 D 160488 CDS NP_743715.1 26988290 1045368 1754940..1755281 1 NC_002947.3 similar to GB:X64057, SP:P28768, and PID:1364257; identified by sequence similarity; antitermination protein Q 1755281 1045368 PP_1558 Pseudomonas putida KT2440 antitermination protein Q NP_743715.1 1754940 D 160488 CDS NP_743716.1 26988291 1045367 1755481..1755804 1 NC_002947.3 similar to GP:6066815, GB:L04569, GB:M57971, GB:Z34811, GB:Z34812, GB:Z34821, GB:Z34822, GB:Z34809, GB:Z34810, GB:Z34813, GB:Z34814, GB:Z34815, GB:Z34816, GB:Z34817, GB:Z34818, GB:Z34819, GB:Z34820, GB:M57972, GB:M91370, GB:Z26294, GB:Z26295, PID:291895, PID:501073, PID:508183, PID:508185, PID:508187, PID:508189, PID:508191, PID:508193, PID:508195, PID:508197, PID:508199, PID:508201, PID:509048, PID:509068, PID:509168, PID:509178, PID:509341, and PID:509344; identified by sequence similarity; phage holin 1755804 1045367 PP_1559 Pseudomonas putida KT2440 phage holin NP_743716.1 1755481 D 160488 CDS NP_743717.1 26988292 1045366 1755865..1756047 1 NC_002947.3 hypothetical protein 1756047 1045366 PP_1560 Pseudomonas putida KT2440 hypothetical protein NP_743717.1 1755865 D 160488 CDS NP_743718.1 26988293 1045365 1756038..1756406 1 NC_002947.3 similar to GP:6066821, and GP:6066821; identified by sequence similarity; phage holin 1756406 1045365 PP_1561 Pseudomonas putida KT2440 phage holin NP_743718.1 1756038 D 160488 CDS NP_743719.1 26988294 1045362 1756534..1756917 1 NC_002947.3 similar to GP:5059248, and GP:5059248; identified by sequence similarity; phage terminase small subunit 1756917 1045362 PP_1562 Pseudomonas putida KT2440 phage terminase small subunit NP_743719.1 1756534 D 160488 CDS NP_743720.1 26988295 1045361 1756941..1758626 1 NC_002947.3 similar to GP:5059249, and GP:13361062; identified by sequence similarity; phage terminase, large subunit 1758626 1045361 PP_1563 Pseudomonas putida KT2440 phage terminase, large subunit NP_743720.1 1756941 D 160488 CDS NP_743721.1 26988296 1045359 1758638..1758802 1 NC_002947.3 hypothetical protein 1758802 1045359 PP_1564 Pseudomonas putida KT2440 hypothetical protein NP_743721.1 1758638 D 160488 CDS NP_743722.1 26988297 1045358 1758834..1760129 1 NC_002947.3 similar to GP:5059250, and GP:5059250; identified by sequence similarity; HK97 family phage portal protein 1760129 1045358 PP_1565 Pseudomonas putida KT2440 HK97 family phage portal protein NP_743722.1 1758834 D 160488 CDS NP_743723.1 26988298 1045357 1760126..1760827 1 NC_002947.3 similar to GP:6863115, SP:P17058, PID:46001, and PID:46126; identified by sequence similarity; head maturation protease 1760827 1045357 PP_1566 Pseudomonas putida KT2440 head maturation protease NP_743723.1 1760126 D 160488 CDS NP_743724.1 26988299 1045355 1760849..1762093 1 NC_002947.3 similar to GP:5059252, and GP:5059252; identified by sequence similarity; HK97 family phage major capsid protein 1762093 1045355 PP_1567 Pseudomonas putida KT2440 HK97 family phage major capsid protein NP_743724.1 1760849 D 160488 CDS NP_743725.1 26988300 1045353 1762135..1762359 1 NC_002947.3 hypothetical protein 1762359 1045353 PP_1568 Pseudomonas putida KT2440 hypothetical protein NP_743725.1 1762135 D 160488 CDS NP_743726.1 26988301 1045348 1762363..1762839 1 NC_002947.3 hypothetical protein 1762839 1045348 PP_1569 Pseudomonas putida KT2440 hypothetical protein NP_743726.1 1762363 D 160488 CDS NP_743727.1 26988302 1045347 1762839..1763180 1 NC_002947.3 similar to GP:6863120, and GP:6901597; identified by sequence similarity; head-tail adaptor 1763180 1045347 PP_1570 Pseudomonas putida KT2440 head-tail adaptor NP_743727.1 1762839 D 160488 CDS NP_743728.1 26988303 1045335 1763173..1763658 1 NC_002947.3 similar to GP:8895116, and GP:8895116; identified by sequence similarity; hypothetical protein 1763658 1045335 PP_1571 Pseudomonas putida KT2440 hypothetical protein NP_743728.1 1763173 D 160488 CDS NP_743729.1 26988304 1045330 1763655..1764023 1 NC_002947.3 similar to GP:8895117, and GP:8895117; identified by sequence similarity; hypothetical protein 1764023 1045330 PP_1572 Pseudomonas putida KT2440 hypothetical protein NP_743729.1 1763655 D 160488 CDS NP_743730.1 26988305 1045320 1764089..1764823 1 NC_002947.3 similar to GP:8895118, and GP:6863123; identified by sequence similarity; major tail protein 1764823 1045320 PP_1573 Pseudomonas putida KT2440 major tail protein NP_743730.1 1764089 D 160488 CDS NP_743731.1 26988306 1045310 1764832..1765302 1 NC_002947.3 similar to GP:6863124, and GP:8895119; identified by sequence similarity; hypothetical protein 1765302 1045310 PP_1574 Pseudomonas putida KT2440 hypothetical protein NP_743731.1 1764832 D 160488 CDS NP_743732.1 26988307 1045304 1765365..1765526 1 NC_002947.3 similar to GP:6863125, and GP:8895120; identified by sequence similarity; hypothetical protein 1765526 1045304 PP_1575 Pseudomonas putida KT2440 hypothetical protein NP_743732.1 1765365 D 160488 CDS NP_743733.1 26988308 1045299 1765588..1765911 1 NC_002947.3 similar to SP:P22704; identified by sequence similarity; immunity protein 1765911 1045299 PP_1576 Pseudomonas putida KT2440 immunity protein NP_743733.1 1765588 D 160488 CDS NP_743734.1 26988309 1045290 1765958..1768399 1 NC_002947.3 similar to GP:8895121, and GP:6863126; identified by sequence similarity; lambda family phage tail tape measure protein 1768399 1045290 PP_1577 Pseudomonas putida KT2440 lambda family phage tail tape measure protein NP_743734.1 1765958 D 160488 CDS NP_743735.1 26988310 1045285 1768396..1768875 1 NC_002947.3 similar to GP:8895124, and GP:8895124; identified by sequence similarity; hypothetical protein 1768875 1045285 PP_1578 Pseudomonas putida KT2440 hypothetical protein NP_743735.1 1768396 D 160488 CDS NP_743736.1 26988311 1045284 1769249..1772248 1 NC_002947.3 similar to GP:8895128, and GP:8895128; identified by sequence similarity; hypothetical protein 1772248 1045284 PP_1579 Pseudomonas putida KT2440 hypothetical protein NP_743736.1 1769249 D 160488 CDS NP_743737.1 26988312 1045198 1772258..1772713 1 NC_002947.3 similar to GP:8895123, and GP:8895123; identified by sequence similarity; hypothetical protein 1772713 1045198 PP_1580 Pseudomonas putida KT2440 hypothetical protein NP_743737.1 1772258 D 160488 CDS NP_743738.1 26988313 1045193 1772814..1774805 1 NC_002947.3 identified by match to PFAM protein family HMM PF02012; BNR repeat-containing protein 1774805 1045193 PP_1581 Pseudomonas putida KT2440 BNR repeat-containing protein NP_743738.1 1772814 D 160488 CDS NP_743739.1 26988314 1045192 1774817..1775893 1 NC_002947.3 hypothetical protein 1775893 1045192 PP_1582 Pseudomonas putida KT2440 hypothetical protein NP_743739.1 1774817 D 160488 CDS NP_743740.1 26988315 1045190 1775921..1776397 1 NC_002947.3 similar to GP:5453372; identified by sequence similarity; structural protein P5 1776397 1045190 PP_1583 Pseudomonas putida KT2440 structural protein P5 NP_743740.1 1775921 D 160488 CDS NP_743741.1 26988316 1045189 1776394..1776894 1 NC_002947.3 hypothetical protein 1776894 1045189 PP_1584 Pseudomonas putida KT2440 hypothetical protein NP_743741.1 1776394 D 160488 CDS NP_743742.1 26988317 1045188 complement(1777554..1777853) 1 NC_002947.3 similar to GP:9950930; identified by sequence similarity; antidote protein 1777853 1045188 PP_1585 Pseudomonas putida KT2440 antidote protein NP_743742.1 1777554 R 160488 CDS NP_743743.1 26988318 1045187 complement(1777862..1778140) 1 NC_002947.3 similar to GP:15076084; identified by sequence similarity; killer protein 1778140 1045187 PP_1586 Pseudomonas putida KT2440 killer protein NP_743743.1 1777862 R 160488 CDS NP_743744.1 26988319 1045184 1778337..1780037 1 NC_002947.3 identified by match to PFAM protein family HMM PF03977; Na+/H+ antiporter 1780037 1045184 PP_1587 Pseudomonas putida KT2440 Na+/H+ antiporter NP_743744.1 1778337 D 160488 CDS NP_743745.1 26988320 1045176 complement(1780143..1781339) 1 NC_002947.3 catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase 1781339 1045176 PP_1588 Pseudomonas putida KT2440 succinyldiaminopimelate transaminase NP_743745.1 1780143 R 160488 CDS NP_743746.1 26988321 1045160 complement(1781370..1784072) 1 NC_002947.3 Catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 1784072 glnD 1045160 glnD Pseudomonas putida KT2440 PII uridylyl-transferase NP_743746.1 1781370 R 160488 CDS NP_743747.1 26988322 1045139 complement(1784114..1784896) 1 NC_002947.3 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 1784896 map 1045139 map Pseudomonas putida KT2440 methionine aminopeptidase NP_743747.1 1784114 R 160488 CDS NP_743748.1 26988323 1045137 1785243..1785980 1 NC_002947.3 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1785980 rpsB 1045137 rpsB Pseudomonas putida KT2440 30S ribosomal protein S2 NP_743748.1 1785243 D 160488 CDS NP_743749.1 26988324 1045134 1786166..1787029 1 NC_002947.3 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1787029 tsf 1045134 tsf Pseudomonas putida KT2440 elongation factor Ts NP_743749.1 1786166 D 160488 CDS NP_743750.1 26988325 1045133 1787211..1787954 1 NC_002947.3 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1787954 pyrH 1045133 pyrH Pseudomonas putida KT2440 uridylate kinase NP_743750.1 1787211 D 160488 CDS NP_743751.1 26988326 1045125 1787951..1788508 1 NC_002947.3 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1788508 frr 1045125 frr Pseudomonas putida KT2440 ribosome recycling factor NP_743751.1 1787951 D 160488 CDS NP_743752.1 26988327 1045122 1788524..1789279 1 NC_002947.3 similar to GB:M88458, SP:P33947, and PID:31218; identified by sequence similarity; UDP diphosphate synthase 1789279 uppS 1045122 uppS Pseudomonas putida KT2440 UDP diphosphate synthase NP_743752.1 1788524 D 160488 CDS NP_743753.1 26988328 1045118 1789279..1790094 1 NC_002947.3 identified by match to PFAM protein family HMM PF01148; phosphatidate cytidylyltransferase 1790094 cdsA 1045118 cdsA Pseudomonas putida KT2440 phosphatidate cytidylyltransferase NP_743753.1 1789279 D 160488 CDS NP_743754.1 26988329 1045056 1790067..1791281 1 NC_002947.3 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1791281 dxr 1045056 dxr Pseudomonas putida KT2440 1-deoxy-D-xylulose 5-phosphate reductoisomerase NP_743754.1 1790067 D 160488 CDS NP_743755.1 26988330 1045013 1791347..1792705 1 NC_002947.3 identified by match to PFAM protein family HMM PF02163; zinc metalloprotease 1792705 1045013 PP_1598 Pseudomonas putida KT2440 zinc metalloprotease NP_743755.1 1791347 D 160488 CDS NP_743756.1 26988331 1044990 1792779..1795139 1 NC_002947.3 identified by match to PFAM protein family HMM PF01103; surface antigen family outer membrane protein 1795139 1044990 PP_1599 Pseudomonas putida KT2440 surface antigen family outer membrane protein NP_743756.1 1792779 D 160488 CDS NP_743757.1 26988332 1044989 1795184..1795687 1 NC_002947.3 identified by match to PFAM protein family HMM PF03938; outer membrane chaperone Skp 1795687 ompH 1044989 ompH Pseudomonas putida KT2440 outer membrane chaperone Skp NP_743757.1 1795184 D 160488 CDS NP_743758.1 26988333 1044945 1795689..1796744 1 NC_002947.3 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1796744 lpxD 1044945 lpxD Pseudomonas putida KT2440 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase NP_743758.1 1795689 D 160488 CDS NP_743759.1 26988334 1044943 1796808..1797299 1 NC_002947.3 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1797299 fabZ 1044943 fabZ Pseudomonas putida KT2440 (3R)-hydroxymyristoyl-ACP dehydratase NP_743759.1 1796808 D 160488 CDS NP_743760.1 26988335 1044942 1797296..1798072 1 NC_002947.3 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1798072 lpxA 1044942 lpxA Pseudomonas putida KT2440 UDP-N-acetylglucosamine acyltransferase NP_743760.1 1797296 D 160488 CDS NP_743761.1 26988336 1044937 1798074..1799201 1 NC_002947.3 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 1799201 lpxB 1044937 lpxB Pseudomonas putida KT2440 lipid-A-disaccharide synthase NP_743761.1 1798074 D 160488 CDS NP_743762.1 26988337 1044936 1799203..1799826 1 NC_002947.3 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1799826 rnhB 1044936 rnhB Pseudomonas putida KT2440 ribonuclease HII NP_743762.1 1799203 D 160488 CDS NP_743763.1 26988338 1044930 1800013..1803537 1 NC_002947.3 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1803537 dnaE 1044930 dnaE Pseudomonas putida KT2440 DNA polymerase III subunit alpha NP_743763.1 1800013 D 160488 CDS NP_743764.1 26988339 1044925 1803644..1804591 1 NC_002947.3 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1804591 accA 1044925 accA Pseudomonas putida KT2440 acetyl-CoA carboxylase carboxyltransferase subunit alpha NP_743764.1 1803644 D 160488 CDS NP_743765.1 26988340 1044923 1804763..1806046 1 NC_002947.3 similar to SP:P07603, GB:X02416, and PID:40831; identified by sequence similarity; tRNA(Ile)-lysidine synthetase 1806046 1044923 PP_1608 Pseudomonas putida KT2440 tRNA(Ile)-lysidine synthetase NP_743765.1 1804763 D 160488 CDS NP_743766.1 26988341 1044921 1806092..1806232 1 NC_002947.3 hypothetical protein 1806232 1044921 PP_1609 Pseudomonas putida KT2440 hypothetical protein NP_743766.1 1806092 D 160488 CDS NP_743767.1 26988342 1044918 1806314..1807942 1 NC_002947.3 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1807942 pyrG 1044918 pyrG Pseudomonas putida KT2440 CTP synthetase NP_743767.1 1806314 D 160488 CDS NP_743768.1 26988343 1044906 1807946..1808791 1 NC_002947.3 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1808791 kdsA-1 1044906 kdsA-1 Pseudomonas putida KT2440 2-dehydro-3-deoxyphosphooctonate aldolase NP_743768.1 1807946 D 160488 CDS NP_743769.1 26988344 1044904 1808946..1810235 1 NC_002947.3 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1810235 eno 1044904 eno Pseudomonas putida KT2440 phosphopyruvate hydratase NP_743769.1 1808946 D 160488 CDS NP_743770.1 26988345 1044901 1810404..1810685 1 NC_002947.3 similar to GP:9949793; identified by sequence similarity; septum formation initiator 1810685 1044901 PP_1613 Pseudomonas putida KT2440 septum formation initiator NP_743770.1 1810404 D 160488 CDS NP_743771.1 26988346 1044895 1810682..1811389 1 NC_002947.3 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1811389 ispD 1044895 ispD Pseudomonas putida KT2440 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NP_743771.1 1810682 D 160488 CDS NP_743772.1 26988347 1044885 complement(1811517..1812413) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 1812413 1044885 PP_1615 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_743772.1 1811517 R 160488 CDS NP_743773.1 26988348 1044879 1812518..1813633 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01751; D-isomer specific 2-hydroxyacid dehydrogenase 1813633 1044879 PP_1616 Pseudomonas putida KT2440 D-isomer specific 2-hydroxyacid dehydrogenase NP_743773.1 1812518 D 160488 CDS NP_743774.1 26988349 1044878 1813642..1814496 1 NC_002947.3 identified by match to PFAM protein family HMM PF00756; S-formylglutathione hydrolase 1814496 1044878 PP_1617 Pseudomonas putida KT2440 S-formylglutathione hydrolase NP_743774.1 1813642 D 160488 CDS NP_743775.1 26988350 1044870 1814609..1815082 1 NC_002947.3 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 1815082 ispF 1044870 ispF Pseudomonas putida KT2440 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase NP_743775.1 1814609 D 160488 CDS NP_743776.1 26988351 1044864 1815079..1816137 1 NC_002947.3 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 1816137 truD 1044864 truD Pseudomonas putida KT2440 tRNA pseudouridine synthase D NP_743776.1 1815079 D 160488 CDS NP_743777.1 26988352 1044860 1816125..1816874 1 NC_002947.3 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1816874 surE 1044860 surE Pseudomonas putida KT2440 stationary phase survival protein SurE NP_743777.1 1816125 D 160488 CDS NP_743778.1 26988353 1044857 1816853..1817548 1 NC_002947.3 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 1817548 pcm 1044857 pcm Pseudomonas putida KT2440 protein-L-isoaspartate O-methyltransferase NP_743778.1 1816853 D 160488 CDS NP_743779.1 26988354 1044856 1817855..1818643 1 NC_002947.3 similar to GP:7839531, and GP:7839531; identified by sequence similarity; peptidase M23B 1818643 nlpD 1044856 nlpD Pseudomonas putida KT2440 peptidase M23B NP_743779.1 1817855 D 160488 CDS NP_743780.1 26988355 1044853 1818752..1819759 1 NC_002947.3 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS 1819759 rpoS 1044853 rpoS Pseudomonas putida KT2440 RNA polymerase sigma factor RpoS NP_743780.1 1818752 D 160488 CDS NP_743781.1 26988356 1044841 1820234..1821655 1 NC_002947.3 similar to GB:L01112, SP:P45375, PID:145016, and PID:1247706; identified by sequence similarity; group II intron-encoding maturase 1821655 1044841 PP_1624 Pseudomonas putida KT2440 group II intron-encoding maturase NP_743781.1 1820234 D 160488 CDS NP_743782.1 26988357 1044839 complement(1822212..1822535) 1 NC_002947.3 similar to GP:7243294, GB:M33146, SP:P21291, PID:181064, and PID:181071; identified by sequence similarity; ferrodoxin, 4Fe-4S 1822535 1044839 PP_1625 Pseudomonas putida KT2440 ferrodoxin, 4Fe-4S NP_743782.1 1822212 R 160488 CDS NP_743783.1 26988358 1044837 complement(1822676..1825249) 1 NC_002947.3 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1825249 mutS 1044837 mutS Pseudomonas putida KT2440 DNA mismatch repair protein MutS NP_743783.1 1822676 R 160488 CDS NP_743784.1 26988359 1044836 1825410..1826501 1 NC_002947.3 similar to GP:9946286; identified by sequence similarity; hypothetical protein 1826501 1044836 PP_1627 Pseudomonas putida KT2440 hypothetical protein NP_743784.1 1825410 D 160488 CDS NP_743785.1 26988360 1044834 1826557..1827039 1 NC_002947.3 similar to SP:P31667, PID:606346, GB:U00096, and PID:1789816; identified by sequence similarity; CinA domain-containing protein 1827039 1044834 PP_1628 Pseudomonas putida KT2440 CinA domain-containing protein NP_743785.1 1826557 D 160488 CDS NP_743786.1 26988361 1044818 1827143..1828210 1 NC_002947.3 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1828210 recA 1044818 recA Pseudomonas putida KT2440 recombinase A NP_743786.1 1827143 D 160488 CDS NP_743787.1 26988362 1044811 1828232..1828702 1 NC_002947.3 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 1828702 recX 1044811 recX Pseudomonas putida KT2440 recombination regulator RecX NP_743787.1 1828232 D 160488 CDS NP_743788.1 26988363 1044808 complement(1828979..1830097) 1 NC_002947.3 similar to GP:9949773; identified by sequence similarity; hypothetical protein 1830097 1044808 PP_1631 Pseudomonas putida KT2440 hypothetical protein NP_743788.1 1828979 R 160488 CDS NP_743789.1 26988364 1044807 1830144..1830467 1 NC_002947.3 hypothetical protein 1830467 1044807 PP_1632 Pseudomonas putida KT2440 hypothetical protein NP_743789.1 1830144 D 160488 CDS NP_743790.1 26988365 1044804 complement(1830482..1830901) 1 NC_002947.3 similar to GP:7579037, and GP:9949768; identified by sequence similarity; hypothetical protein 1830901 1044804 PP_1633 Pseudomonas putida KT2440 hypothetical protein NP_743790.1 1830482 R 160488 CDS NP_743791.1 26988366 1044802 1831118..1831828 1 NC_002947.3 similar to GP:7579038; identified by sequence similarity; DTW domain containing protein 1831828 1044802 PP_1634 Pseudomonas putida KT2440 DTW domain containing protein NP_743791.1 1831118 D 160488 CDS NP_743792.1 26988367 1044800 1832008..1832658 1 NC_002947.3 similar to GP:7579039, and GP:7579039; identified by sequence similarity; LuxR family transcriptional regulator 1832658 1044800 PP_1635 Pseudomonas putida KT2440 LuxR family transcriptional regulator NP_743792.1 1832008 D 160488 CDS NP_743793.1 26988368 1044799 1832732..1833097 1 NC_002947.3 similar to GP:7579040, and GP:9949759; identified by sequence similarity; diacylglycerol kinase 1833097 dgkA-1 1044799 dgkA-1 Pseudomonas putida KT2440 diacylglycerol kinase NP_743793.1 1832732 D 160488 CDS NP_743794.1 26988369 1044797 complement(1833094..1834020) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 1834020 1044797 PP_1637 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_743794.1 1833094 R 160488 CDS NP_743795.1 26988370 1044791 1834138..1834917 1 NC_002947.3 similar to SP:Q44532, GB:Z19054, SP:P35222, PID:38520, and PID:860988; identified by sequence similarity; oxidoreductase FAD/NAD(P)-binding domain-containing protein 1834917 fpr 1044791 fpr Pseudomonas putida KT2440 oxidoreductase FAD/NAD(P)-binding domain-containing protein NP_743795.1 1834138 D 160488 CDS NP_743796.1 26988371 1044790 complement(1835060..1835554) 1 NC_002947.3 similar to GB:L16896, GB:M20677, SP:P10074, PID:1177229, PID:1177230, and PID:292935; identified by sequence similarity; hypothetical protein 1835554 1044790 PP_1639 Pseudomonas putida KT2440 hypothetical protein NP_743796.1 1835060 R 160488 CDS NP_743797.1 26988372 1044788 complement(1835686..1836285) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03626; hypothetical protein 1836285 1044788 PP_1640 Pseudomonas putida KT2440 hypothetical protein NP_743797.1 1835686 R 160488 CDS NP_743798.1 26988373 1044776 1836549..1837373 1 NC_002947.3 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 1837373 1044776 PP_1641 Pseudomonas putida KT2440 C32 tRNA thiolase NP_743798.1 1836549 D 160488 CDS NP_743799.1 26988374 1044775 1837378..1838049 1 NC_002947.3 identified by match to PFAM protein family HMM PF03352; hypothetical protein 1838049 1044775 PP_1642 Pseudomonas putida KT2440 hypothetical protein NP_743799.1 1837378 D 160488 CDS NP_743800.1 26988375 1044771 complement(1838153..1838566) 1 NC_002947.3 hypothetical protein 1838566 1044771 PP_1643 Pseudomonas putida KT2440 hypothetical protein NP_743800.1 1838153 R 160488 CDS NP_743801.1 26988376 1044763 complement(1838559..1839164) 1 NC_002947.3 similar to GP:9946855, and GP:9946855; identified by sequence similarity; trp repressor binding protein 1839164 wrbA 1044763 wrbA Pseudomonas putida KT2440 trp repressor binding protein NP_743801.1 1838559 R 160488 CDS NP_743802.1 26988377 1044757 complement(1839161..1839514) 1 NC_002947.3 similar to GP:9946856, and SP:P08692; identified by sequence similarity; arsenate reductase 1839514 arsC-1 1044757 arsC-1 Pseudomonas putida KT2440 arsenate reductase NP_743802.1 1839161 R 160488 CDS NP_743803.1 26988378 1044754 1839600..1840064 1 NC_002947.3 identified by match to PFAM protein family HMM PF00085; alkyl hydroperoxide reductase 1840064 1044754 PP_1646 Pseudomonas putida KT2440 alkyl hydroperoxide reductase NP_743803.1 1839600 D 160488 CDS NP_743804.1 26988379 1044750 complement(1840100..1840531) 1 NC_002947.3 similar to GP:9946829; identified by sequence similarity; hypothetical protein 1840531 1044750 PP_1647 Pseudomonas putida KT2440 hypothetical protein NP_743804.1 1840100 R 160488 CDS NP_743805.1 26988380 1044742 complement(1840501..1840938) 1 NC_002947.3 hypothetical protein 1840938 1044742 PP_1648 Pseudomonas putida KT2440 hypothetical protein NP_743805.1 1840501 R 160488 CDS NP_743806.1 26988381 1044740 complement(1840970..1841998) 1 NC_002947.3 Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthes; D-lactate dehydrogenase 1841998 ldhA 1044740 ldhA Pseudomonas putida KT2440 D-lactate dehydrogenase NP_743806.1 1840970 R 160488 CDS NP_743807.1 26988382 1044739 complement(1842036..1844789) 1 NC_002947.3 similar to GP:6273355, and GP:6273355; identified by sequence similarity; multi-sensor hybrid histidine kinase 1844789 gacS 1044739 gacS Pseudomonas putida KT2440 multi-sensor hybrid histidine kinase NP_743807.1 1842036 R 160488 CDS NP_743808.1 26988383 1044421 1844884..1845702 1 NC_002947.3 identified by match to PFAM protein family HMM PF00072; winged helix family two component transcriptional regulator 1845702 1044421 PP_1651 Pseudomonas putida KT2440 winged helix family two component transcriptional regulator NP_743808.1 1844884 D 160488 CDS NP_743809.1 26988384 1044394 1845706..1847082 1 NC_002947.3 identified by match to PFAM protein family HMM PF02518; sensor histidine kinase 1847082 1044394 PP_1652 Pseudomonas putida KT2440 sensor histidine kinase NP_743809.1 1845706 D 160488 CDS NP_743810.1 26988385 1044390 1847276..1848241 1 NC_002947.3 similar to GP:7741879; identified by sequence similarity; ISPpu10, transposase 1848241 1044390 PP_1653 Pseudomonas putida KT2440 ISPpu10, transposase NP_743810.1 1847276 D 160488 CDS NP_743811.1 26988386 1044388 1848556..1849455 1 NC_002947.3 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 1849455 cysM 1044388 cysM Pseudomonas putida KT2440 cysteine synthase B NP_743811.1 1848556 D 160488 CDS NP_743812.1 26988387 1044387 1849456..1850814 1 NC_002947.3 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1850814 rumA 1044387 rumA Pseudomonas putida KT2440 23S rRNA 5-methyluridine methyltransferase NP_743812.1 1849456 D 160488 CDS NP_743813.1 26988388 1044386 1850911..1853151 1 NC_002947.3 identified by match to PFAM protein family HMM PF02824; (p)ppGpp synthetase I SpoT/RelA 1853151 relA 1044386 relA Pseudomonas putida KT2440 (p)ppGpp synthetase I SpoT/RelA NP_743813.1 1850911 D 160488 CDS NP_743814.1 26988389 1044384 1853275..1854108 1 NC_002947.3 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era; nucleoside triphosphate pyrophosphohydrolase 1854108 mazG 1044384 mazG Pseudomonas putida KT2440 nucleoside triphosphate pyrophosphohydrolase NP_743814.1 1853275 D 160488 CDS NP_743815.1 26988390 1044383 1854135..1854674 1 NC_002947.3 hypothetical protein 1854674 1044383 PP_1658 Pseudomonas putida KT2440 hypothetical protein NP_743815.1 1854135 D 160488 CDS NP_743816.1 26988391 1044382 1854985..1856325 1 NC_002947.3 similar to GB:M35128, GB:M35128, GB:X15263, GB:X52068, SP:P11229, PID:180535, PID:297406, PID:32318, PID:34451, GB:M35128, GB:M35128, GB:X15263, GB:X52068, SP:P11229, PID:180535, PID:297406, PID:32318, and PID:34451; identified by sequence similarity; hypothetical protein 1856325 1044382 PP_1659 Pseudomonas putida KT2440 hypothetical protein NP_743816.1 1854985 D 160488 CDS NP_743817.1 26988392 1044314 1856291..1856821 1 NC_002947.3 hypothetical protein 1856821 1044314 PP_1660 Pseudomonas putida KT2440 hypothetical protein NP_743817.1 1856291 D 160488 CDS NP_743818.1 26988393 1044297 1856818..1859076 1 NC_002947.3 similar to GP:7212801; identified by sequence similarity; dehydrogenase subunit 1859076 1044297 PP_1661 Pseudomonas putida KT2440 dehydrogenase subunit NP_743818.1 1856818 D 160488 CDS NP_743819.1 26988394 1044265 complement(1859177..1859404) 1 NC_002947.3 hypothetical protein 1859404 1044265 PP_1662 Pseudomonas putida KT2440 hypothetical protein NP_743819.1 1859177 R 160488 CDS NP_743820.1 26988395 1044251 complement(1859560..1860270) 1 NC_002947.3 similar to GP:9946848; identified by sequence similarity; hypothetical protein 1860270 1044251 PP_1663 Pseudomonas putida KT2440 hypothetical protein NP_743820.1 1859560 R 160488 CDS NP_743821.1 26988396 1044234 complement(1860279..1860932) 1 NC_002947.3 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 1860932 purN 1044234 purN Pseudomonas putida KT2440 phosphoribosylglycinamide formyltransferase NP_743821.1 1860279 R 160488 CDS NP_743822.1 26988397 1044224 complement(1860932..1861990) 1 NC_002947.3 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1861990 purM 1044224 purM Pseudomonas putida KT2440 phosphoribosylaminoimidazole synthetase NP_743822.1 1860932 R 160488 CDS NP_743823.1 26988398 1044220 1862311..1863378 1 NC_002947.3 similar to GP:9946852; identified by sequence similarity; hypothetical protein 1863378 1044220 PP_1666 Pseudomonas putida KT2440 hypothetical protein NP_743823.1 1862311 D 160488 CDS NP_743824.1 26988399 1044215 1863391..1864464 1 NC_002947.3 identified by match to PFAM protein family HMM PF04087; hypothetical protein 1864464 1044215 PP_1667 Pseudomonas putida KT2440 hypothetical protein NP_743824.1 1863391 D 160488 CDS NP_743825.1 26988400 1044214 1864663..1865370 1 NC_002947.3 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 1865370 1044214 PP_1668 Pseudomonas putida KT2440 DNA replication initiation factor NP_743825.1 1864663 D 160488 CDS NP_743826.1 26988401 1044211 1865492..1866136 1 NC_002947.3 identified by match to PFAM protein family HMM PF00877; NLP/P60 protein 1866136 1044211 PP_1669 Pseudomonas putida KT2440 NLP/P60 protein NP_743826.1 1865492 D 160488 CDS NP_743827.1 26988402 1044207 1866279..1866812 1 NC_002947.3 identified by match to PFAM protein family HMM PF00877; NLP/P60 protein 1866812 1044207 PP_1670 Pseudomonas putida KT2440 NLP/P60 protein NP_743827.1 1866279 D 160488 CDS NP_743828.1 26988403 1044205 complement(1866949..1867116) 1 NC_002947.3 hypothetical protein 1867116 1044205 PP_1671 Pseudomonas putida KT2440 hypothetical protein NP_743828.1 1866949 R 160488 CDS NP_743829.1 26988404 1044183 1867275..1867886 1 NC_002947.3 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1867886 cobO 1044183 cobO Pseudomonas putida KT2440 cob(I)yrinic acid a,c-diamide adenosyltransferase NP_743829.1 1867275 D 160488 CDS NP_743830.1 26988405 1044181 1867883..1869178 1 NC_002947.3 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 1869178 cobB 1044181 cobB Pseudomonas putida KT2440 cobyrinic acid a,c-diamide synthase NP_743830.1 1867883 D 160488 CDS NP_743831.1 26988406 1044162 1869175..1869825 1 NC_002947.3 similar to GB:U05040, and PID:460152; identified by sequence similarity; cob(II)yrinic acid a,c-diamide reductase 1869825 1044162 PP_1674 Pseudomonas putida KT2440 cob(II)yrinic acid a,c-diamide reductase NP_743831.1 1869175 D 160488 CDS NP_743832.1 26988407 1044147 1869807..1870730 1 NC_002947.3 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 1870730 cobD 1044147 cobD Pseudomonas putida KT2440 cobalamin biosynthesis protein NP_743832.1 1869807 D 160488 CDS NP_743833.1 26988408 1044146 1870723..1871715 1 NC_002947.3 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 1871715 cobC 1044146 cobC Pseudomonas putida KT2440 threonine-phosphate decarboxylase NP_743833.1 1870723 D 160488 CDS NP_743834.1 26988409 1044077 1871712..1873166 1 NC_002947.3 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1873166 cobQ 1044077 cobQ Pseudomonas putida KT2440 cobyric acid synthase NP_743834.1 1871712 D 160488 CDS NP_743835.1 26988410 1044040 1873168..1873689 1 NC_002947.3 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase 1873689 cobU 1044040 cobU Pseudomonas putida KT2440 adenosylcobinamide kinase NP_743835.1 1873168 D 160488 CDS NP_743836.1 26988411 1043997 1873686..1874741 1 NC_002947.3 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1874741 cobT 1043997 cobT Pseudomonas putida KT2440 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase NP_743836.1 1873686 D 160488 CDS NP_743837.1 26988412 1043958 1874738..1875304 1 NC_002947.3 similar to GB:L20469, GB:L35902, GB:L35903, GB:U25441, GB:U32499, SP:P35462, PID:579579, PID:806903, and PID:927342; identified by sequence similarity; alpha-ribazole-5'-phosphate phosphatase 1875304 1043958 PP_1680 Pseudomonas putida KT2440 alpha-ribazole-5'-phosphate phosphatase NP_743837.1 1874738 D 160488 CDS NP_743838.1 26988413 1043916 1875273..1876028 1 NC_002947.3 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 1876028 cobS 1043916 cobS Pseudomonas putida KT2440 cobalamin synthase NP_743838.1 1875273 D 160488 CDS NP_743839.1 26988414 1043896 1876059..1877363 1 NC_002947.3 identified by match to PFAM protein family HMM PF00150; glycosyl hydrolase 1877363 1043896 PP_1682 Pseudomonas putida KT2440 glycosyl hydrolase NP_743839.1 1876059 D 160488 CDS NP_743840.1 26988415 1043874 1877426..1877830 1 NC_002947.3 identified by match to PFAM protein family HMM PF03551; MarR family transcriptional regulator 1877830 1043874 PP_1683 Pseudomonas putida KT2440 MarR family transcriptional regulator NP_743840.1 1877426 D 160488 CDS NP_743841.1 26988416 1043870 1877875..1879095 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00890; major facilitator superfamily transporter 1879095 1043870 PP_1684 Pseudomonas putida KT2440 major facilitator superfamily transporter NP_743841.1 1877875 D 160488 CDS NP_743842.1 26988417 1043776 1879092..1879214 1 NC_002947.3 hypothetical protein 1879214 1043776 PP_1685 Pseudomonas putida KT2440 hypothetical protein NP_743842.1 1879092 D 160488 CDS NP_743843.1 26988418 1043746 1879204..1879812 1 NC_002947.3 similar to SP:O08368; identified by sequence similarity; glutathione peroxidase 1879812 1043746 PP_1686 Pseudomonas putida KT2440 glutathione peroxidase NP_743843.1 1879204 D 160488 CDS NP_743844.1 26988419 1043744 complement(1879948..1880247) 1 NC_002947.3 hypothetical protein 1880247 1043744 PP_1687 Pseudomonas putida KT2440 hypothetical protein NP_743844.1 1879948 R 160488 CDS NP_743845.1 26988420 1043743 1880323..1881252 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 1881252 1043743 PP_1688 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_743845.1 1880323 D 160488 CDS NP_743846.1 26988421 1043739 complement(1881294..1882559) 1 NC_002947.3 similar to SP:P10384; identified by sequence similarity; aromatic hydrocarbon degradation protein 1882559 1043739 PP_1689 Pseudomonas putida KT2440 aromatic hydrocarbon degradation protein NP_743846.1 1881294 R 160488 CDS NP_743847.1 26988422 1043738 complement(1882707..1883189) 1 NC_002947.3 similar to GP:9947224, and GP:9947224; identified by sequence similarity; hypothetical protein 1883189 1043738 PP_1690 Pseudomonas putida KT2440 hypothetical protein NP_743847.1 1882707 R 160488 CDS NP_743848.1 26988423 1043737 complement(1883439..1883663) 1 NC_002947.3 similar to GP:9946697; identified by sequence similarity; hypothetical protein 1883663 1043737 PP_1691 Pseudomonas putida KT2440 hypothetical protein NP_743848.1 1883439 R 160488 CDS NP_743849.1 26988424 1043731 1884609..1885034 1 NC_002947.3 Sel1 domain-containing protein repeat-containing protein 1885034 1043731 PP_1692 Pseudomonas putida KT2440 Sel1 domain-containing protein repeat-containing protein NP_743849.1 1884609 D 160488 CDS NP_743850.1 26988425 1043727 complement(1885106..1885300) 1 NC_002947.3 hypothetical protein 1885300 1043727 PP_1693 Pseudomonas putida KT2440 hypothetical protein NP_743850.1 1885106 R 160488 CDS NP_743851.1 26988426 1043719 1885331..1886818 1 NC_002947.3 identified by match to PFAM protein family HMM PF02646; hypothetical protein 1886818 1043719 PP_1694 Pseudomonas putida KT2440 hypothetical protein NP_743851.1 1885331 D 160488 CDS NP_743852.1 26988427 1043697 complement(1886790..1890269) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03601; integral membrane sensor hybrid histidine kinase 1890269 1043697 PP_1695 Pseudomonas putida KT2440 integral membrane sensor hybrid histidine kinase NP_743852.1 1886790 R 160488 CDS NP_743853.1 26988428 1043689 complement(1890396..1891574) 1 NC_002947.3 similar to GB:L09234, SP:P38607, and PID:291866; identified by sequence similarity; major facilitator superfamily protein 1891574 1043689 PP_1696 Pseudomonas putida KT2440 major facilitator superfamily protein NP_743853.1 1890396 R 160488 CDS NP_743854.1 26988429 1043663 1891561..1892487 1 NC_002947.3 similar to GP:8546897; identified by sequence similarity; GntR family transcriptional regulator 1892487 1043663 PP_1697 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_743854.1 1891561 D 160488 CDS NP_743855.1 26988430 1043660 1892582..1893856 1 NC_002947.3 identified by match to PFAM protein family HMM PF00083; major facilitator family transporter 1893856 1043660 PP_1698 Pseudomonas putida KT2440 major facilitator family transporter NP_743855.1 1892582 D 160488 CDS NP_743856.1 26988431 1043651 1893872..1894714 1 NC_002947.3 similar to GP:3738249; identified by sequence similarity; amidohydrolase 1894714 1043651 PP_1699 Pseudomonas putida KT2440 amidohydrolase NP_743856.1 1893872 D 160488 CDS NP_743857.1 26988432 1043643 1894764..1896749 1 NC_002947.3 identified by match to PFAM protein family HMM PF04241; phospholipid/glycerol acyltransferase 1896749 1043643 PP_1700 Pseudomonas putida KT2440 phospholipid/glycerol acyltransferase NP_743857.1 1894764 D 160488 CDS NP_743858.1 26988433 1043639 complement(1896753..1897070) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00893; small multidrug resistance protein 1897070 sugE 1043639 sugE Pseudomonas putida KT2440 small multidrug resistance protein NP_743858.1 1896753 R 160488 CDS NP_743859.1 26988434 1043631 complement(1897288..1898208) 1 NC_002947.3 Required for efficient pilin antigenic variation; recombination associated protein 1898208 rdgC 1043631 rdgC Pseudomonas putida KT2440 recombination associated protein NP_743859.1 1897288 R 160488 CDS NP_743860.1 26988435 1043630 1899399..1903472 1 NC_002947.3 similar to GP:8347220, and GP:8347220; identified by sequence similarity; molybdopterin oxidoreductase 1903472 1043630 PP_1703 Pseudomonas putida KT2440 molybdopterin oxidoreductase NP_743860.1 1899399 D 160488 CDS NP_743861.1 26988436 1043627 1903494..1903619 1 NC_002947.3 hypothetical protein 1903619 1043627 PP_1704 Pseudomonas putida KT2440 hypothetical protein NP_743861.1 1903494 D 160488 CDS NP_743862.1 26988437 1043623 1903743..1906295 1 NC_002947.3 similar to GB:M94539, SP:Q01064, PID:179891, GB:M95623, GB:X04217, GB:X04808, GB:D10608, GB:D12722, SP:P08397, PID:292385, PID:292386, PID:35305, PID:35307, and PID:35309; identified by sequence similarity; nitrite reductase (NAD(P)H) large subunit 1906295 nirB 1043623 nirB Pseudomonas putida KT2440 nitrite reductase (NAD(P)H) large subunit NP_743862.1 1903743 D 160488 CDS NP_743863.1 26988438 1043622 1906295..1906657 1 NC_002947.3 similar to GB:M94539, SP:Q01064, PID:179891, GB:L20469, GB:L35902, GB:L35903, GB:U25441, GB:U32499, SP:P35462, PID:579579, PID:806903, and PID:927342; identified by sequence similarity; nitrite reductase (NAD(P)H) small subunit 1906657 nirD 1043622 nirD Pseudomonas putida KT2440 nitrite reductase (NAD(P)H) small subunit NP_743863.1 1906295 D 160488 CDS NP_743864.1 26988439 1043609 complement(1906785..1907735) 1 NC_002947.3 similar to GP:6453875; identified by sequence similarity; D-isomer specific 2-hydroxyacid dehydrogenase 1907735 1043609 PP_1707 Pseudomonas putida KT2440 D-isomer specific 2-hydroxyacid dehydrogenase NP_743864.1 1906785 R 160488 CDS NP_743865.1 26988440 1043603 complement(1907760..1908518) 1 NC_002947.3 similar to GP:6469272; identified by sequence similarity; short chain dehydrogenase/reductase oxidoreductase 1908518 1043603 PP_1708 Pseudomonas putida KT2440 short chain dehydrogenase/reductase oxidoreductase NP_743865.1 1907760 R 160488 CDS NP_743866.1 26988441 1043601 complement(1908537..1909247) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01557; fumarylacetoacetate hydrolase 1909247 1043601 PP_1709 Pseudomonas putida KT2440 fumarylacetoacetate hydrolase NP_743866.1 1908537 R 160488 CDS NP_743867.1 26988442 1043595 complement(1909468..1910808) 1 NC_002947.3 similar to GB:Z11584, GB:Z11583, GB:Z14227, GB:Z14229, GB:Z14228, GB:Z11584, GB:Z11583, GB:Z14227, GB:Z14229, and GB:Z14228; identified by sequence similarity; major facilitator superfamily transporter phthalate permease 1910808 1043595 PP_1710 Pseudomonas putida KT2440 major facilitator superfamily transporter phthalate permease NP_743867.1 1909468 R 160488 CDS NP_743868.1 26988443 1043589 1911104..1912033 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 1912033 1043589 PP_1711 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_743868.1 1911104 D 160488 CDS NP_743869.1 26988444 1043521 complement(1912059..1913468) 1 NC_002947.3 hypothetical protein 1913468 1043521 PP_1712 Pseudomonas putida KT2440 hypothetical protein NP_743869.1 1912059 R 160488 CDS NP_743870.1 26988445 1043499 1913631..1914563 1 NC_002947.3 similar to GP:10442737, and GP:10442737; identified by sequence similarity; LysR family transcriptional regulator 1914563 pcaQ 1043499 pcaQ Pseudomonas putida KT2440 LysR family transcriptional regulator NP_743870.1 1913631 D 160488 CDS NP_743871.1 26988446 1043498 1914817..1915569 1 NC_002947.3 similar to SP:P39311; identified by sequence similarity; FKBP-type peptidylprolyl isomerase 1915569 fklB-2 1043498 fklB-2 Pseudomonas putida KT2440 FKBP-type peptidylprolyl isomerase NP_743871.1 1914817 D 160488 CDS NP_743872.1 26988447 1043474 1915858..1916295 1 NC_002947.3 hypothetical protein 1916295 1043474 PP_1715 Pseudomonas putida KT2440 hypothetical protein NP_743872.1 1915858 D 160488 CDS NP_743873.1 26988448 1043470 1916410..1916748 1 NC_002947.3 identified by match to PFAM protein family HMM PF01381; Cro/CI family transcriptional regulator 1916748 1043470 PP_1716 Pseudomonas putida KT2440 Cro/CI family transcriptional regulator NP_743873.1 1916410 D 160488 CDS NP_743874.1 26988449 1043464 1916745..1917113 1 NC_002947.3 hypothetical protein 1917113 1043464 PP_1717 Pseudomonas putida KT2440 hypothetical protein NP_743874.1 1916745 D 160488 CDS NP_743875.1 26988450 1043461 complement(1917139..1918278) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00563; diguanylate phosphodiesterase 1918278 1043461 PP_1718 Pseudomonas putida KT2440 diguanylate phosphodiesterase NP_743875.1 1917139 R 160488 CDS NP_743876.1 26988451 1043459 complement(1918339..1920453) 1 NC_002947.3 similar to GB:M26061, SP:P16499, and PID:2366987; identified by sequence similarity; carboxyl-terminal protease 1920453 prc 1043459 prc Pseudomonas putida KT2440 carboxyl-terminal protease NP_743876.1 1918339 R 160488 CDS NP_743877.1 26988452 1043458 1920560..1921522 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01751; zinc-containing alcohol dehydrogenase 1921522 1043458 PP_1720 Pseudomonas putida KT2440 zinc-containing alcohol dehydrogenase NP_743877.1 1920560 D 160488 CDS NP_743878.1 26988453 1043457 complement(1921583..1922236) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01488; HAD superfamily hydrolase 1922236 1043457 PP_1721 Pseudomonas putida KT2440 HAD superfamily hydrolase NP_743878.1 1921583 R 160488 CDS NP_743879.1 26988454 1043456 complement(1922251..1923240) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00968; ABC transporter ATP-binding protein 1923240 1043456 PP_1722 Pseudomonas putida KT2440 ABC transporter ATP-binding protein NP_743879.1 1922251 R 160488 CDS NP_743880.1 26988455 1043455 complement(1923242..1924036) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01726; binding-protein-dependent transport system inner membrane protein 1924036 1043455 PP_1723 Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_743880.1 1923242 R 160488 CDS NP_743881.1 26988456 1043454 complement(1924026..1924865) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01726; binding-protein-dependent transport system inner membrane protein 1924865 1043454 PP_1724 Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_743881.1 1924026 R 160488 CDS NP_743882.1 26988457 1043452 complement(1924862..1925698) 1 NC_002947.3 type I phosphodiesterase/nucleotide pyrophosphatase 1925698 1043452 PP_1725 Pseudomonas putida KT2440 type I phosphodiesterase/nucleotide pyrophosphatase NP_743882.1 1924862 R 160488 CDS NP_743883.1 26988458 1043451 complement(1925798..1926862) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00971; ABC transporter substrate-binding protein 1926862 1043451 PP_1726 Pseudomonas putida KT2440 ABC transporter substrate-binding protein NP_743883.1 1925798 R 160488 CDS NP_743884.1 26988459 1043450 1927190..1927903 1 NC_002947.3 identified by match to PFAM protein family HMM PF00392; GntR family transcriptional regulator 1927903 1043450 PP_1727 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_743884.1 1927190 D 160488 CDS NP_743885.1 26988460 1043449 complement(1927935..1930088) 1 NC_002947.3 similar to GP:9951419; identified by sequence similarity; hypothetical protein 1930088 1043449 PP_1728 Pseudomonas putida KT2440 hypothetical protein NP_743885.1 1927935 R 160488 CDS NP_743886.1 26988461 1043448 complement(1930127..1930330) 1 NC_002947.3 hypothetical protein 1930330 1043448 PP_1729 Pseudomonas putida KT2440 hypothetical protein NP_743886.1 1930127 R 160488 CDS NP_743887.1 26988462 1043447 complement(1930435..1931724) 1 NC_002947.3 catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 1931724 1043447 PP_1730 Pseudomonas putida KT2440 aminopeptidase NP_743887.1 1930435 R 160488 CDS NP_743888.1 26988463 1043445 complement(1932680..1932934) 1 NC_002947.3 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1932934 minE 1043445 minE Pseudomonas putida KT2440 cell division topological specificity factor MinE NP_743888.1 1932680 R 160488 CDS NP_743889.1 26988464 1043444 complement(1932938..1933750) 1 NC_002947.3 similar to SP:P18197; identified by sequence similarity; septum site-determining protein MinD 1933750 minD 1043444 minD Pseudomonas putida KT2440 septum site-determining protein MinD NP_743889.1 1932938 R 160488 CDS NP_743890.1 26988465 1043443 complement(1933860..1934687) 1 NC_002947.3 blocks the formation of polar Z-ring septums; septum formation inhibitor 1934687 minC 1043443 minC Pseudomonas putida KT2440 septum formation inhibitor NP_743890.1 1933860 R 160488 CDS NP_743891.1 26988466 1043442 1934733..1935668 1 NC_002947.3 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 1935668 htrB 1043442 htrB Pseudomonas putida KT2440 lipid A biosynthesis lauroyl acyltransferase NP_743891.1 1934733 D 160488 CDS NP_743892.1 26988467 1043441 1935696..1936844 1 NC_002947.3 similar to GP:9949364; identified by sequence similarity; patatin 1936844 1043441 PP_1736 Pseudomonas putida KT2440 patatin NP_743892.1 1935696 D 160488 CDS NP_743893.1 26988468 1043440 complement(1936934..1937680) 1 NC_002947.3 VacJ family lipoprotein 1937680 1043440 PP_1737 Pseudomonas putida KT2440 VacJ family lipoprotein NP_743893.1 1936934 R 160488 CDS NP_743894.1 26988469 1043438 complement(1937754..1939052) 1 NC_002947.3 similar to GP:9949360; identified by sequence similarity; hypothetical protein 1939052 1043438 PP_1738 Pseudomonas putida KT2440 hypothetical protein NP_743894.1 1937754 R 160488 CDS NP_743895.1 26988470 1043437 1939231..1939608 1 NC_002947.3 hypothetical protein 1939608 1043437 PP_1739 Pseudomonas putida KT2440 hypothetical protein NP_743895.1 1939231 D 160488 CDS NP_743896.1 26988471 1043436 complement(1939696..1941273) 1 NC_002947.3 similar to GB:X78533, PID:468815, GB:X78533, and PID:468815; identified by sequence similarity; beta (1-6) glucans synthase 1941273 1043436 PP_1740 Pseudomonas putida KT2440 beta (1-6) glucans synthase NP_743896.1 1939696 R 160488 CDS NP_743897.1 26988472 1043435 1941456..1942319 1 NC_002947.3 identified by match to PFAM protein family HMM PF04069; glycine betaine ABC transporter substrate-binding protein 1942319 1043435 PP_1741 Pseudomonas putida KT2440 glycine betaine ABC transporter substrate-binding protein NP_743897.1 1941456 D 160488 CDS NP_743898.1 26988473 1043433 1942524..1942835 1 NC_002947.3 similar to GP:9949357; identified by sequence similarity; hypothetical protein 1942835 1043433 PP_1742 Pseudomonas putida KT2440 hypothetical protein NP_743898.1 1942524 D 160488 CDS NP_743899.1 26988474 1043431 1942832..1944496 1 NC_002947.3 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 1944496 actP 1043431 actP Pseudomonas putida KT2440 acetate permease NP_743899.1 1942832 D 160488 CDS NP_743900.1 26988475 1043429 complement(1944758..1944910) 1 NC_002947.3 hypothetical protein 1944910 1043429 PP_1744 Pseudomonas putida KT2440 hypothetical protein NP_743900.1 1944758 R 160488 CDS NP_743901.1 26988476 1043428 1945117..1945926 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01500; short chain dehydrogenase 1945926 1043428 PP_1745 Pseudomonas putida KT2440 short chain dehydrogenase NP_743901.1 1945117 D 160488 CDS NP_743902.1 26988477 1043426 1946047..1946226 1 NC_002947.3 similar to GB:J03071, GB:A00501, GB:V00519, GB:M13438, GB:V00520, GB:J00148, GB:A12770, GB:A15072, GB:M14398, SP:P01241, SP:P01243, PID:183147, PID:183159, PID:490144, and PID:512406; identified by sequence similarity; carbon storage regulator CsrA 1946226 1043426 PP_1746 Pseudomonas putida KT2440 carbon storage regulator CsrA NP_743902.1 1946047 D 160488 CDS NP_743903.1 26988478 1043425 complement(1946241..1946468) 1 NC_002947.3 similar to GP:9949606; identified by sequence similarity; hypothetical protein 1946468 1043425 PP_1747 Pseudomonas putida KT2440 hypothetical protein NP_743903.1 1946241 R 160488 CDS NP_743904.1 26988479 1043424 complement(1946552..1947736) 1 NC_002947.3 hypothetical protein 1947736 1043424 PP_1748 Pseudomonas putida KT2440 hypothetical protein NP_743904.1 1946552 R 160488 CDS NP_743905.1 26988480 1043423 complement(1947906..1949651) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01575; acetyltransferase 1949651 1043423 PP_1749 Pseudomonas putida KT2440 acetyltransferase NP_743905.1 1947906 R 160488 CDS NP_743906.1 26988481 1043422 complement(1949655..1951442) 1 NC_002947.3 similar to GP:9949601, GB:U04815, GB:U04818, GB:U04824, GB:U04816, GB:U04817, SP:P21127, PID:189481, PID:507158, PID:507160, PID:507162, PID:507164, PID:507166, PID:507168, PID:507427, and PID:507429; identified by sequence similarity; asparagine synthetase 1951442 asnB 1043422 asnB Pseudomonas putida KT2440 asparagine synthetase NP_743906.1 1949655 R 160488 CDS NP_743907.1 26988482 1043421 complement(1951573..1953537) 1 NC_002947.3 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 1953537 mnmC 1043421 mnmC Pseudomonas putida KT2440 5-methylaminomethyl-2-thiouridine methyltransferase NP_743907.1 1951573 R 160488 CDS NP_743908.1 26988483 1043418 1953674..1955167 1 NC_002947.3 similar to GP:9949597; identified by sequence similarity; hypothetical protein 1955167 1043418 PP_1752 Pseudomonas putida KT2440 hypothetical protein NP_743908.1 1953674 D 160488 CDS NP_743909.1 26988484 1043417 1955360..1956334 1 NC_002947.3 similar to GB:L04572, SP:P28689, GB:L05381, PID:145787, PID:146393, GB:U00096, PID:1736484, and PID:1788147; identified by sequence similarity; hypothetical protein 1956334 1043417 PP_1753 Pseudomonas putida KT2440 hypothetical protein NP_743909.1 1955360 D 160488 CDS NP_743910.1 26988485 1043416 1956409..1957569 1 NC_002947.3 similar to GP:15021212; identified by sequence similarity; hypothetical protein 1957569 1043416 PP_1754 Pseudomonas putida KT2440 hypothetical protein NP_743910.1 1956409 D 160488 CDS NP_743911.1 26988486 1043414 complement(1957666..1959060) 1 NC_002947.3 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1959060 fumC-2 1043414 fumC-2 Pseudomonas putida KT2440 fumarate hydratase NP_743911.1 1957666 R 160488 CDS NP_743912.1 26988487 1043412 1959215..1959739 1 NC_002947.3 similar to GP:5139534, and GP:5139534; identified by sequence similarity; hypothetical protein 1959739 1043412 PP_1756 Pseudomonas putida KT2440 hypothetical protein NP_743912.1 1959215 D 160488 CDS NP_743913.1 26988488 1043410 1959750..1960046 1 NC_002947.3 similar to GP:5139535, and SP:P15298; identified by sequence similarity; BolA family protein 1960046 bolA 1043410 bolA Pseudomonas putida KT2440 BolA family protein NP_743913.1 1959750 D 160488 CDS NP_743914.1 26988489 1043407 1960174..1961106 1 NC_002947.3 identified by match to PFAM protein family HMM PF00581; hypothetical protein 1961106 1043407 PP_1758 Pseudomonas putida KT2440 hypothetical protein NP_743914.1 1960174 D 160488 CDS NP_743915.1 26988490 1043384 1961143..1961742 1 NC_002947.3 similar to GP:9946756; identified by sequence similarity; DSBA oxidoreductase 1961742 1043384 PP_1759 Pseudomonas putida KT2440 DSBA oxidoreductase NP_743915.1 1961143 D 160488 CDS NP_743916.1 26988491 1043379 1961735..1963567 1 NC_002947.3 identified by match to PFAM protein family HMM PF04229; ABC transporter ATP-binding protein 1963567 1043379 PP_1760 Pseudomonas putida KT2440 ABC transporter ATP-binding protein NP_743916.1 1961735 D 160488 CDS NP_743917.1 26988492 1043374 1963390..1966311 1 NC_002947.3 identified by match to PFAM protein family HMM PF00563; sensory box protein/GGDEF family protein 1966311 1043374 PP_1761 Pseudomonas putida KT2440 sensory box protein/GGDEF family protein NP_743917.1 1963390 D 160488 CDS NP_743918.1 26988493 1043365 1966342..1967127 1 NC_002947.3 hypothetical protein 1967127 1043365 PP_1762 Pseudomonas putida KT2440 hypothetical protein NP_743918.1 1966342 D 160488 CDS NP_743919.1 26988494 1043364 complement(1967246..1967986) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01500; short chain dehydrogenase 1967986 1043364 PP_1763 Pseudomonas putida KT2440 short chain dehydrogenase NP_743919.1 1967246 R 160488 CDS NP_743920.1 26988495 1043363 complement(1968144..1968815) 1 NC_002947.3 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 1968815 1043363 PP_1764 Pseudomonas putida KT2440 phosphoglycolate phosphatase NP_743920.1 1968144 R 160488 CDS NP_743921.1 26988496 1043362 complement(1968818..1969516) 1 NC_002947.3 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 1969516 ubiG 1043362 ubiG Pseudomonas putida KT2440 3-demethylubiquinone-9 3-methyltransferase NP_743921.1 1968818 R 160488 CDS NP_743922.1 26988497 1043360 1969627..1970703 1 NC_002947.3 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase 1970703 mtnA 1043360 mtnA Pseudomonas putida KT2440 methylthioribose-1-phosphate isomerase NP_743922.1 1969627 D 160488 CDS NP_743923.1 26988498 1043356 1971069..1973840 1 NC_002947.3 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1973840 gyrA 1043356 gyrA Pseudomonas putida KT2440 DNA gyrase subunit A NP_743923.1 1971069 D 160488 CDS NP_743924.1 26988499 1043354 1973988..1975073 1 NC_002947.3 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1975073 serC 1043354 serC Pseudomonas putida KT2440 phosphoserine aminotransferase NP_743924.1 1973988 D 160488 CDS NP_743925.1 26988500 1043353 1975066..1976169 1 NC_002947.3 identified by match to PFAM protein family HMM PF01817; chorismate mutase 1976169 pheA 1043353 pheA Pseudomonas putida KT2440 chorismate mutase NP_743925.1 1975066 D 160488 CDS NP_743926.1 26988501 1043352 1976334..1978574 1 NC_002947.3 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate and catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase 1978574 1043352 PP_1770 Pseudomonas putida KT2440 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase NP_743926.1 1976334 D 160488 CDS NP_743927.1 26988502 1043351 1978571..1979257 1 NC_002947.3 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1979257 cmk 1043351 cmk Pseudomonas putida KT2440 cytidylate kinase NP_743927.1 1978571 D 160488 CDS NP_743928.2 161378133 1043348 1979382..1981058 1 NC_002947.3 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1981058 rpsA 1043348 rpsA Pseudomonas putida KT2440 30S ribosomal protein S1 NP_743928.2 1979382 D 160488 CDS NP_743929.1 26988504 1043345 1981358..1981660 1 NC_002947.3 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 1981660 ihfB 1043345 ihfB Pseudomonas putida KT2440 integration host factor subunit beta NP_743929.1 1981358 D 160488 CDS NP_743930.1 26988505 1043344 1981629..1981943 1 NC_002947.3 hypothetical protein 1981943 1043344 PP_1774 Pseudomonas putida KT2440 hypothetical protein NP_743930.1 1981629 D 160488 CDS NP_743931.1 26988506 1043342 1982046..1983479 1 NC_002947.3 similar to GP:3724326; identified by sequence similarity; beta-lactamase domain-containing protein 1983479 1043342 PP_1775 Pseudomonas putida KT2440 beta-lactamase domain-containing protein NP_743931.1 1982046 D 160488 CDS NP_743932.1 26988507 1043340 1983807..1985249 1 NC_002947.3 identified by match to PFAM protein family HMM PF01050; mannose-6-phosphate isomerase 1985249 1043340 PP_1776 Pseudomonas putida KT2440 mannose-6-phosphate isomerase NP_743932.1 1983807 D 160488 CDS NP_743933.1 26988508 1043339 1985379..1986740 1 NC_002947.3 similar to GB:V00510, GB:J00123, GB:V00509, SP:P01210, PID:182099, and PID:31151; identified by sequence similarity; phosphomannomutase 1986740 xanA 1043339 xanA Pseudomonas putida KT2440 phosphomannomutase NP_743933.1 1985379 D 160488 CDS NP_743934.1 26988509 1043335 1986743..1987537 1 NC_002947.3 similar to GB:M33819; identified by sequence similarity; lipopolysaccharide ABC export system, permease 1987537 1043335 PP_1778 Pseudomonas putida KT2440 lipopolysaccharide ABC export system, permease NP_743934.1 1986743 D 160488 CDS NP_743935.1 26988510 1043334 1987534..1988751 1 NC_002947.3 similar to GP:3142212, and GB:X53695; identified by sequence similarity; lipopolysaccharide ABC export system, ATP-binding protein 1988751 1043334 PP_1779 Pseudomonas putida KT2440 lipopolysaccharide ABC export system, ATP-binding protein NP_743935.1 1987534 D 160488 CDS NP_743936.1 26988511 1043327 1988652..1993559 1 NC_002947.3 similar to GP:7209347; identified by sequence similarity; mannosyltransferase 1993559 1043327 PP_1780 Pseudomonas putida KT2440 mannosyltransferase NP_743936.1 1988652 D 160488 CDS NP_743937.1 26988512 1043326 complement(1993657..1994745) 1 NC_002947.3 similar to GP:6759588, GB:J05252, SP:P16519, PID:189131, and PID:189652; identified by sequence similarity; O-acyltransferase 1994745 1043326 PP_1781 Pseudomonas putida KT2440 O-acyltransferase NP_743937.1 1993657 R 160488 CDS NP_743938.1 26988513 1043325 complement(1996036..1996584) 1 NC_002947.3 similar to GP:3832508; identified by sequence similarity; dTDP-4-dehydrorhamnose 3,5-epimerase 1996584 rmlC 1043325 rmlC Pseudomonas putida KT2440 dTDP-4-dehydrorhamnose 3,5-epimerase NP_743938.1 1996036 R 160488 CDS NP_743939.1 26988514 1043324 complement(1996584..1997465) 1 NC_002947.3 similar to GB:D90276, and PID:219539; identified by sequence similarity; glucose-1-phosphate thymidylyltransferase 1997465 rmlA 1043324 rmlA Pseudomonas putida KT2440 glucose-1-phosphate thymidylyltransferase NP_743939.1 1996584 R 160488 CDS NP_743940.1 26988515 1043323 complement(1997477..1998379) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01746; dTDP-4-dehydrorhamnose reductase 1998379 rmlD 1043323 rmlD Pseudomonas putida KT2440 dTDP-4-dehydrorhamnose reductase NP_743940.1 1997477 R 160488 CDS NP_743941.1 26988516 1043322 complement(1998376..1999476) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01746; dTDP-glucose 4,6-dehydratase 1999476 rmlB 1043322 rmlB Pseudomonas putida KT2440 dTDP-glucose 4,6-dehydratase NP_743941.1 1998376 R 160488 CDS NP_743942.1 26988517 1043320 2000057..2003500 1 NC_002947.3 identified by match to PFAM protein family HMM PF03693; glycosyl transferase family protein 2003500 1043320 PP_1786 Pseudomonas putida KT2440 glycosyl transferase family protein NP_743942.1 2000057 D 160488 CDS NP_743943.1 26988518 1043317 2003497..2004507 1 NC_002947.3 hypothetical protein 2004507 1043317 PP_1787 Pseudomonas putida KT2440 hypothetical protein NP_743943.1 2003497 D 160488 CDS NP_743944.1 26988519 1043316 complement(2004657..2005736) 1 NC_002947.3 hypothetical protein 2005736 1043316 PP_1788 Pseudomonas putida KT2440 hypothetical protein NP_743944.1 2004657 R 160488 CDS NP_743945.1 26988520 1043315 complement(2005983..2006666) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01454; HAD superfamily hydrolase 2006666 1043315 PP_1789 Pseudomonas putida KT2440 HAD superfamily hydrolase NP_743945.1 2005983 R 160488 CDS NP_743946.1 26988521 1043314 complement(2006663..2007358) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02348; acylneuraminate cytidylyltransferase 2007358 1043314 PP_1790 Pseudomonas putida KT2440 acylneuraminate cytidylyltransferase NP_743946.1 2006663 R 160488 CDS NP_743947.1 26988522 1043312 complement(2007355..2008959) 1 NC_002947.3 similar to GB:U09063, and PID:483868; identified by sequence similarity; aldolase 2008959 1043312 PP_1791 Pseudomonas putida KT2440 aldolase NP_743947.1 2007355 R 160488 CDS NP_743948.1 26988523 1043311 complement(2009001..2011430) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03490; glycosyl transferase family protein 2011430 1043311 PP_1792 Pseudomonas putida KT2440 glycosyl transferase family protein NP_743948.1 2009001 R 160488 CDS NP_743949.1 26988524 1043310 complement(2011430..2014018) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01556; glycosyl transferase family protein 2014018 1043310 PP_1793 Pseudomonas putida KT2440 glycosyl transferase family protein NP_743949.1 2011430 R 160488 CDS NP_743950.1 26988525 1043309 complement(2014042..2015484) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00427; hypothetical protein 2015484 1043309 PP_1794 Pseudomonas putida KT2440 hypothetical protein NP_743950.1 2014042 R 160488 CDS NP_743951.1 26988526 1043308 complement(2015502..2016389) 1 NC_002947.3 hypothetical protein 2016389 1043308 PP_1795 Pseudomonas putida KT2440 hypothetical protein NP_743951.1 2015502 R 160488 CDS NP_743952.1 26988527 1043306 2018723..2020048 1 NC_002947.3 similar to GP:4009448; identified by sequence similarity; HlyD family secretion protein 2020048 1043306 PP_1797 Pseudomonas putida KT2440 HlyD family secretion protein NP_743952.1 2018723 D 160488 CDS NP_743953.1 26988528 1043305 2020045..2021460 1 NC_002947.3 identified by match to PFAM protein family HMM PF02321; outer membrane efflux protein 2021460 1043305 PP_1798 Pseudomonas putida KT2440 outer membrane efflux protein NP_743953.1 2020045 D 160488 CDS NP_743954.1 26988529 1043304 2021899..2022966 1 NC_002947.3 similar to GP:14090400; identified by sequence similarity; GDP-mannose 4,6-dehydratase 2022966 gmd 1043304 gmd Pseudomonas putida KT2440 GDP-mannose 4,6-dehydratase NP_743954.1 2021899 D 160488 CDS NP_743955.1 26988530 1043303 2022966..2023862 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01746; oxidoreductase Rmd 2023862 rmd 1043303 rmd Pseudomonas putida KT2440 oxidoreductase Rmd NP_743955.1 2022966 D 160488 CDS NP_743956.1 26988531 1043302 2023859..2025001 1 NC_002947.3 similar to GP:6137218; identified by sequence similarity; glycosyl transferase WbpY 2025001 wbpY 1043302 wbpY Pseudomonas putida KT2440 glycosyl transferase WbpY NP_743956.1 2023859 D 160488 CDS NP_743957.1 26988532 1043301 2024893..2026107 1 NC_002947.3 identified by match to PFAM protein family HMM PF00534; glycosyl transferase WbpZ 2026107 wbpZ 1043301 wbpZ Pseudomonas putida KT2440 glycosyl transferase WbpZ NP_743957.1 2024893 D 160488 CDS NP_743958.1 26988533 1043299 2026240..2027211 1 NC_002947.3 similar to GP:6690124, and GP:6690124; identified by sequence similarity; UDP-sugar epimerase 2027211 wbpV 1043299 wbpV Pseudomonas putida KT2440 UDP-sugar epimerase NP_743958.1 2026240 D 160488 CDS NP_743959.1 26988534 1043298 2027208..2028212 1 NC_002947.3 similar to GP:10119921; identified by sequence similarity; glycosyl transferase WbpL 2028212 wbpL 1043298 wbpL Pseudomonas putida KT2440 glycosyl transferase WbpL NP_743959.1 2027208 D 160488 CDS NP_743960.1 26988535 1043297 2028258..2030324 1 NC_002947.3 similar to GP:9949255, and GP:6690122; identified by sequence similarity; polysaccharide biosynthesis protein CapD 2030324 wbpM 1043297 wbpM Pseudomonas putida KT2440 polysaccharide biosynthesis protein CapD NP_743960.1 2028258 D 160488 CDS NP_743961.1 26988536 1043296 2030371..2031324 1 NC_002947.3 similar to GB:M80254, SP:P30405, and PID:181274; identified by sequence similarity; KpsF/GutQ family protein 2031324 1043296 PP_1806 Pseudomonas putida KT2440 KpsF/GutQ family protein NP_743961.1 2030371 D 160488 CDS NP_743962.1 26988537 1043295 complement(2031399..2032241) 1 NC_002947.3 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 2032241 kdsA-2 1043295 kdsA-2 Pseudomonas putida KT2440 2-dehydro-3-deoxyphosphooctonate aldolase NP_743962.1 2031399 R 160488 CDS NP_743963.1 26988538 1043294 2032517..2034181 1 NC_002947.3 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 2034181 pgi 1043294 pgi Pseudomonas putida KT2440 glucose-6-phosphate isomerase NP_743963.1 2032517 D 160488 CDS NP_743964.1 26988539 1043293 2035254..2035358 1 NC_002947.3 hypothetical protein 2035358 1043293 PP_1809 Pseudomonas putida KT2440 hypothetical protein NP_743964.1 2035254 D 160488 CDS NP_743965.1 26988540 1043292 2036663..2037403 1 NC_002947.3 hypothetical protein 2037403 1043292 PP_1810 Pseudomonas putida KT2440 hypothetical protein NP_743965.1 2036663 D 160488 CDS NP_743966.1 26988541 1043291 complement(2038334..2039476) 1 NC_002947.3 similar to SP:P27828; identified by sequence similarity; UDP-N-acetylglucosamine 2-epimerase 2039476 wecB 1043291 wecB Pseudomonas putida KT2440 UDP-N-acetylglucosamine 2-epimerase NP_743966.1 2038334 R 160488 CDS NP_743967.1 26988542 1043289 complement(2039598..2039798) 1 NC_002947.3 hypothetical protein 2039798 1043289 PP_1812 Pseudomonas putida KT2440 hypothetical protein NP_743967.1 2039598 R 160488 CDS NP_743968.1 26988543 1043288 2039896..2040234 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01259; competence protein ComEA 2040234 1043288 PP_1813 Pseudomonas putida KT2440 competence protein ComEA NP_743968.1 2039896 D 160488 CDS NP_743969.1 26988544 1043287 complement(2040271..2040438) 1 NC_002947.3 similar to GP:9948973, and GP:9948973; identified by sequence similarity; hypothetical protein 2040438 1043287 PP_1814 Pseudomonas putida KT2440 hypothetical protein NP_743969.1 2040271 R 160488 CDS NP_743970.1 26988545 1043286 2040622..2041323 1 NC_002947.3 OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 2041323 pyrF 1043286 pyrF Pseudomonas putida KT2440 orotidine 5'-phosphate decarboxylase NP_743970.1 2040622 D 160488 CDS NP_743971.1 26988546 1043285 complement(2041551..2042552) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01751; zinc-containing alcohol dehydrogenase 2042552 1043285 PP_1816 Pseudomonas putida KT2440 zinc-containing alcohol dehydrogenase NP_743971.1 2041551 R 160488 CDS NP_743972.1 26988547 1043284 2042730..2043491 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01500; short chain dehydrogenase 2043491 1043284 PP_1817 Pseudomonas putida KT2440 short chain dehydrogenase NP_743972.1 2042730 D 160488 CDS NP_743973.1 26988548 1043283 complement(2043635..2044378) 1 NC_002947.3 hypothetical protein 2044378 1043283 PP_1818 Pseudomonas putida KT2440 hypothetical protein NP_743973.1 2043635 R 160488 CDS NP_743974.1 26988549 1043282 2044784..2046724 1 NC_002947.3 identified by match to PFAM protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer 2046724 1043282 PP_1819 Pseudomonas putida KT2440 methyl-accepting chemotaxis sensory transducer NP_743974.1 2044784 D 160488 CDS NP_743975.1 26988550 1043281 complement(2046821..2048017) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00843; benzoate transporter 2048017 1043281 PP_1820 Pseudomonas putida KT2440 benzoate transporter NP_743975.1 2046821 R 160488 CDS NP_743976.1 26988551 1043280 2048156..2048758 1 NC_002947.3 identified by match to PFAM protein family HMM PF00043; glutathione S-transferase 2048758 1043280 PP_1821 Pseudomonas putida KT2440 glutathione S-transferase NP_743976.1 2048156 D 160488 CDS NP_743977.1 26988552 1043279 complement(2048897..2049268) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02798; glutaredoxin 2049268 1043279 PP_1822 Pseudomonas putida KT2440 glutaredoxin NP_743977.1 2048897 R 160488 CDS NP_743978.1 26988553 1043278 complement(2049328..2049900) 1 NC_002947.3 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 2049900 folE 1043278 folE Pseudomonas putida KT2440 GTP cyclohydrolase I NP_743978.1 2049328 R 160488 CDS NP_743979.1 26988554 1043277 complement(2049944..2050504) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01713; Smr domain-containing protein 2050504 1043277 PP_1824 Pseudomonas putida KT2440 Smr domain-containing protein NP_743979.1 2049944 R 160488 CDS NP_743980.1 26988555 1043276 complement(2050679..2050999) 1 NC_002947.3 similar to GP:9947648, and GP:9947648; identified by sequence similarity; hypothetical protein 2050999 1043276 PP_1825 Pseudomonas putida KT2440 hypothetical protein NP_743980.1 2050679 R 160488 CDS NP_743981.1 26988556 1043275 complement(2051085..2051675) 1 NC_002947.3 similar to GP:8250600; identified by sequence similarity; isochorismatase superfamily hydrolase 2051675 1043275 PP_1826 Pseudomonas putida KT2440 isochorismatase superfamily hydrolase NP_743981.1 2051085 R 160488 CDS NP_743982.1 26988557 1043274 2051857..2052765 1 NC_002947.3 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2052765 1043274 PP_1827 Pseudomonas putida KT2440 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase NP_743982.1 2051857 D 160488 CDS NP_743983.1 26988558 1043273 complement(2052815..2053597) 1 NC_002947.3 hypothetical protein 2053597 1043273 PP_1828 Pseudomonas putida KT2440 hypothetical protein NP_743983.1 2052815 R 160488 CDS NP_743984.1 26988559 1043272 complement(2053663..2054622) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00561; alpha/beta hydrolase 2054622 1043272 PP_1829 Pseudomonas putida KT2440 alpha/beta hydrolase NP_743984.1 2053663 R 160488 CDS NP_743985.1 26988560 1043271 2054857..2055948 1 NC_002947.3 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2055948 aroC 1043271 aroC Pseudomonas putida KT2440 chorismate synthase NP_743985.1 2054857 D 160488 CDS NP_743986.1 26988561 1043270 2056091..2057245 1 NC_002947.3 similar to GP:9947654; identified by sequence similarity; major facilitator superfamily protein 2057245 1043270 PP_1831 Pseudomonas putida KT2440 major facilitator superfamily protein NP_743986.1 2056091 D 160488 CDS NP_743987.1 26988562 1043269 2057245..2057781 1 NC_002947.3 identified by match to PFAM protein family HMM PF03079; oxidase 2057781 1043269 PP_1832 Pseudomonas putida KT2440 oxidase NP_743987.1 2057245 D 160488 CDS NP_743988.1 26988563 1043268 complement(2057909..2058211) 1 NC_002947.3 similar to GP:9948826, and GP:9948826; identified by sequence similarity; hypothetical protein 2058211 1043268 PP_1833 Pseudomonas putida KT2440 hypothetical protein NP_743988.1 2057909 R 160488 CDS NP_743989.1 26988564 1043267 2058448..2058972 1 NC_002947.3 identified by match to PFAM protein family HMM PF00023; ankyrin domain-containing protein 2058972 1043267 PP_1834 Pseudomonas putida KT2440 ankyrin domain-containing protein NP_743989.1 2058448 D 160488 CDS NP_743990.1 26988565 1043266 2059033..2059563 1 NC_002947.3 hypothetical protein 2059563 1043266 PP_1835 Pseudomonas putida KT2440 hypothetical protein NP_743990.1 2059033 D 160488 CDS NP_743991.1 26988566 1043265 complement(2059687..2060439) 1 NC_002947.3 similar to GB:J04809, SP:P00568, and PID:178322; identified by sequence similarity; hypothetical protein 2060439 1043265 PP_1836 Pseudomonas putida KT2440 hypothetical protein NP_743991.1 2059687 R 160488 CDS NP_743992.1 26988567 1043264 2060752..2060943 1 NC_002947.3 hypothetical protein 2060943 1043264 PP_1837 Pseudomonas putida KT2440 hypothetical protein NP_743992.1 2060752 D 160488 CDS NP_743993.1 26988568 1043263 2061083..2063140 1 NC_002947.3 identified by match to PFAM protein family HMM PF04185; hypothetical protein 2063140 1043263 PP_1838 Pseudomonas putida KT2440 hypothetical protein NP_743993.1 2061083 D 160488 CDS NP_743994.1 26988569 1043262 2063191..2063583 1 NC_002947.3 hypothetical protein 2063583 1043262 PP_1839 Pseudomonas putida KT2440 hypothetical protein NP_743994.1 2063191 D 160488 CDS NP_743995.1 26988570 1043261 2063761..2064093 1 NC_002947.3 similar to GP:9947704; identified by sequence similarity; hypothetical protein 2064093 1043261 PP_1840 Pseudomonas putida KT2440 hypothetical protein NP_743995.1 2063761 D 160488 CDS NP_743996.1 26988571 1043260 complement(2064194..2064994) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00034; cytochrome c family protein 2064994 1043260 PP_1841 Pseudomonas putida KT2440 cytochrome c family protein NP_743996.1 2064194 R 160488 CDS NP_743997.1 26988572 1043259 2065524..2066258 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00888; amidotransferase 2066258 1043259 PP_1842 Pseudomonas putida KT2440 amidotransferase NP_743997.1 2065524 D 160488 CDS NP_743998.1 26988573 1043258 complement(2066299..2067270) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00383; Mg2+/Co2+ transporter 2067270 1043258 PP_1843 Pseudomonas putida KT2440 Mg2+/Co2+ transporter NP_743998.1 2066299 R 160488 CDS NP_743999.1 26988574 1043257 complement(2067339..2068052) 1 NC_002947.3 similar to GB:J04982, GB:J03593, GB:J02966, SP:P05141, SP:P12235, PID:178659, PID:339725, PID:339920, GB:J04982, GB:J03593, GB:J02966, SP:P05141, SP:P12235, PID:178659, PID:339725, and PID:339920; identified by sequence similarity; 1-acyl-sn-glycerol-3-phosphate acyltransferase 2068052 plsC 1043257 plsC Pseudomonas putida KT2440 1-acyl-sn-glycerol-3-phosphate acyltransferase NP_743999.1 2067339 R 160488 CDS NP_744000.1 26988575 1043256 complement(2068173..2068862) 1 NC_002947.3 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2068862 1043256 PP_1845 Pseudomonas putida KT2440 enoyl-CoA hydratase NP_744000.1 2068173 R 160488 CDS NP_744001.1 26988576 1043255 2069624..2071045 1 NC_002947.3 similar to GB:L01112, SP:P45375, PID:145016, and PID:1247706; identified by sequence similarity; group II intron-encoding maturase 2071045 1043255 PP_1846 Pseudomonas putida KT2440 group II intron-encoding maturase NP_744001.1 2069624 D 160488 CDS NP_744002.1 26988577 1043254 complement(2071272..2073461) 1 NC_002947.3 similar to GB:U10528, PID:505694, and SP:P50185; identified by sequence similarity; TonB-dependent siderophore receptor 2073461 1043254 PP_1847 Pseudomonas putida KT2440 TonB-dependent siderophore receptor NP_744002.1 2071272 R 160488 CDS NP_744003.1 26988578 1043253 complement(2073464..2073577) 1 NC_002947.3 hypothetical protein 2073577 1043253 PP_1848 Pseudomonas putida KT2440 hypothetical protein NP_744003.1 2073464 R 160488 CDS NP_744004.1 26988579 1043252 complement(2073605..2073985) 1 NC_002947.3 hypothetical protein 2073985 1043252 PP_1849 Pseudomonas putida KT2440 hypothetical protein NP_744004.1 2073605 R 160488 CDS NP_744005.1 26988580 1043249 complement(2074188..2075375) 1 NC_002947.3 similar to SP:P31127, GB:U00096, and PID:1787815; identified by sequence similarity; major facilitator superfamily protein 2075375 1043249 PP_1850 Pseudomonas putida KT2440 major facilitator superfamily protein NP_744005.1 2074188 R 160488 CDS NP_744006.1 26988581 1043248 complement(2075455..2076405) 1 NC_002947.3 hypothetical protein 2076405 1043248 PP_1851 Pseudomonas putida KT2440 hypothetical protein NP_744006.1 2075455 R 160488 CDS NP_744007.1 26988582 1043247 complement(2076406..2077155) 1 NC_002947.3 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 2077155 fabG 1043247 fabG Pseudomonas putida KT2440 3-ketoacyl-ACP reductase NP_744007.1 2076406 R 160488 CDS NP_744008.1 26988583 1043246 2077274..2078212 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 2078212 1043246 PP_1853 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744008.1 2077274 D 160488 CDS NP_744009.1 26988584 1043245 complement(2078327..2078797) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01462; hypothetical protein 2078797 1043245 PP_1854 Pseudomonas putida KT2440 hypothetical protein NP_744009.1 2078327 R 160488 CDS NP_744010.1 26988585 1043244 complement(2078800..2079198) 1 NC_002947.3 hypothetical protein 2079198 1043244 PP_1855 Pseudomonas putida KT2440 hypothetical protein NP_744010.1 2078800 R 160488 CDS NP_744011.1 26988586 1043243 complement(2079177..2079281) 1 NC_002947.3 hypothetical protein 2079281 1043243 PP_1856 Pseudomonas putida KT2440 hypothetical protein NP_744011.1 2079177 R 160488 CDS NP_744012.1 26988587 1043242 2079328..2080461 1 NC_002947.3 hypothetical protein 2080461 1043242 PP_1857 Pseudomonas putida KT2440 hypothetical protein NP_744012.1 2079328 D 160488 CDS NP_744013.1 26988588 1043241 2080510..2081079 1 NC_002947.3 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2081079 efp 1043241 efp Pseudomonas putida KT2440 elongation factor P NP_744013.1 2080510 D 160488 CDS NP_744014.1 26988589 1043240 complement(2081194..2081622) 1 NC_002947.3 similar to SP:O68390; identified by sequence similarity; OsmC family protein 2081622 ohr 1043240 ohr Pseudomonas putida KT2440 OsmC family protein NP_744014.1 2081194 R 160488 CDS NP_744015.1 26988590 1043239 complement(2081763..2082218) 1 NC_002947.3 similar to GP:9948936; identified by sequence similarity; MarR family transcriptional regulator 2082218 1043239 PP_1860 Pseudomonas putida KT2440 MarR family transcriptional regulator NP_744015.1 2081763 R 160488 CDS NP_744016.1 26988591 1043238 complement(2082277..2083230) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 2083230 1043238 PP_1861 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744016.1 2082277 R 160488 CDS NP_744017.1 26988592 1043237 2083344..2084093 1 NC_002947.3 identified by match to PFAM protein family HMM PF01925; hypothetical protein 2084093 1043237 PP_1862 Pseudomonas putida KT2440 hypothetical protein NP_744017.1 2083344 D 160488 CDS NP_744018.1 26988593 1043233 complement(2084122..2084973) 1 NC_002947.3 similar to GP:9948933; identified by sequence similarity; LysR family transcriptional regulator 2084973 1043233 PP_1863 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744018.1 2084122 R 160488 CDS NP_744019.1 26988594 1043232 2085136..2085288 1 NC_002947.3 similar to GP:9948932; identified by sequence similarity; hypothetical protein 2085288 1043232 PP_1864 Pseudomonas putida KT2440 hypothetical protein NP_744019.1 2085136 D 160488 CDS NP_744020.1 26988595 1043231 2085883..2087184 1 NC_002947.3 identified by match to PFAM protein family HMM PF01609; ISPpu8, transposase 2087184 1043231 PP_1865 Pseudomonas putida KT2440 ISPpu8, transposase NP_744020.1 2085883 D 160488 CDS NP_744021.1 26988596 1043230 complement(2088102..2089448) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01474; phospho-2-dehydro-3-deoxyheptonate aldolase 2089448 1043230 PP_1866 Pseudomonas putida KT2440 phospho-2-dehydro-3-deoxyheptonate aldolase NP_744021.1 2088102 R 160488 CDS NP_744022.1 26988597 1043229 2089565..2090320 1 NC_002947.3 similar to GP:9948929; identified by sequence similarity; hypothetical protein 2090320 1043229 PP_1867 Pseudomonas putida KT2440 hypothetical protein NP_744022.1 2089565 D 160488 CDS NP_744023.1 26988598 1043228 2090672..2092351 1 NC_002947.3 identified by match to PFAM protein family HMM PF00271; DEAD/DEAH box helicase 2092351 1043228 PP_1868 Pseudomonas putida KT2440 DEAD/DEAH box helicase NP_744023.1 2090672 D 160488 CDS NP_744024.1 26988599 1043227 complement(2092442..2093236) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02900; hypothetical protein 2093236 1043227 PP_1869 Pseudomonas putida KT2440 hypothetical protein NP_744024.1 2092442 R 160488 CDS NP_744025.1 26988600 1043226 2093311..2093961 1 NC_002947.3 catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 2093961 tpm 1043226 tpm Pseudomonas putida KT2440 thiopurine S-methyltransferase NP_744025.1 2093311 D 160488 CDS NP_744026.1 26988601 1043225 complement(2094059..2094946) 1 NC_002947.3 metalloprotease; heat shock protein HtpX 2094946 htpX 1043225 htpX Pseudomonas putida KT2440 heat shock protein HtpX NP_744026.1 2094059 R 160488 CDS NP_744027.1 26988602 1043224 complement(2095263..2096474) 1 NC_002947.3 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase 2096474 1043224 PP_1872 Pseudomonas putida KT2440 aminotransferase NP_744027.1 2095263 R 160488 CDS NP_744028.1 26988603 1043223 2096642..2097037 1 NC_002947.3 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 2097037 1043223 PP_1873 Pseudomonas putida KT2440 methionine sulfoxide reductase B NP_744028.1 2096642 D 160488 CDS NP_744029.1 26988604 1043222 2097051..2097539 1 NC_002947.3 similar to GB:M94582, GB:M99412, GB:U11869, GB:U11874, GB:U11872, GB:U11873, GB:U11875, GB:U11876, GB:U11877, GB:U11878, GB:M73969, GB:U11866, GB:U11867, GB:U11868, GB:L19593, SP:P25025, PID:1109691, PID:186378, PID:511803, PID:559054, and PID:576679; identified by sequence similarity; glutathione peroxidase 2097539 1043222 PP_1874 Pseudomonas putida KT2440 glutathione peroxidase NP_744029.1 2097051 D 160488 CDS NP_744030.1 26988605 1043221 complement(2097529..2099886) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02518; histidine kinase 2099886 1043221 PP_1875 Pseudomonas putida KT2440 histidine kinase NP_744030.1 2097529 R 160488 CDS NP_744031.1 26988606 1043220 2099932..2100978 1 NC_002947.3 similar to GP:9948908, and GP:9948908; identified by sequence similarity; hypothetical protein 2100978 1043220 PP_1876 Pseudomonas putida KT2440 hypothetical protein NP_744031.1 2099932 D 160488 CDS NP_744032.1 26988607 1043219 2100979..2101461 1 NC_002947.3 identified by match to PFAM protein family HMM PF01590; GAF domain-containing protein 2101461 1043219 PP_1877 Pseudomonas putida KT2440 GAF domain-containing protein NP_744032.1 2100979 D 160488 CDS NP_744033.1 26988608 1043218 complement(2101537..2102304) 1 NC_002947.3 similar to GP:9948905; identified by sequence similarity; hypothetical protein 2102304 1043218 PP_1878 Pseudomonas putida KT2440 hypothetical protein NP_744033.1 2101537 R 160488 CDS NP_744034.1 26988609 1043216 complement(2103366..2104880) 1 NC_002947.3 hypothetical protein 2104880 1043216 PP_1879 Pseudomonas putida KT2440 hypothetical protein NP_744034.1 2103366 R 160488 CDS NP_744035.1 26988610 1043215 complement(2104921..2107113) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03797; outer membrane autotransporter 2107113 1043215 PP_1880 Pseudomonas putida KT2440 outer membrane autotransporter NP_744035.1 2104921 R 160488 CDS NP_744036.1 26988611 1043213 complement(2107302..2109326) 1 NC_002947.3 hypothetical protein 2109326 1043213 PP_1881 Pseudomonas putida KT2440 hypothetical protein NP_744036.1 2107302 R 160488 CDS NP_744037.1 26988612 1043211 complement(2109384..2114282) 1 NC_002947.3 similar to GP:4928251, GB:D00726, SP:P22830, and PID:219656; identified by sequence similarity; hypothetical protein 2114282 1043211 PP_1882 Pseudomonas putida KT2440 hypothetical protein NP_744037.1 2109384 R 160488 CDS NP_744038.1 26988613 1043209 2114376..2116283 1 NC_002947.3 hypothetical protein 2116283 1043209 PP_1883 Pseudomonas putida KT2440 hypothetical protein NP_744038.1 2114376 D 160488 CDS NP_744039.1 26988614 1043207 2116322..2118787 1 NC_002947.3 hypothetical protein 2118787 1043207 PP_1884 Pseudomonas putida KT2440 hypothetical protein NP_744039.1 2116322 D 160488 CDS NP_744040.1 26988615 1043205 2118847..2121201 1 NC_002947.3 hypothetical protein 2121201 1043205 PP_1885 Pseudomonas putida KT2440 hypothetical protein NP_744040.1 2118847 D 160488 CDS NP_744041.1 26988616 1043204 2121170..2124097 1 NC_002947.3 hypothetical protein 2124097 1043204 PP_1886 Pseudomonas putida KT2440 hypothetical protein NP_744041.1 2121170 D 160488 CDS NP_744042.1 26988617 1043203 2124627..2128499 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01643; hypothetical protein 2128499 1043203 PP_1887 Pseudomonas putida KT2440 hypothetical protein NP_744042.1 2124627 D 160488 CDS NP_744043.1 26988618 1043202 complement(2128549..2129643) 1 NC_002947.3 similar to SP:P42185; identified by sequence similarity; fimbrial protein 2129643 1043202 PP_1888 Pseudomonas putida KT2440 fimbrial protein NP_744043.1 2128549 R 160488 CDS NP_744044.1 26988619 1043196 complement(2129700..2132195) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00577; fimbrial biogenesis outer membrane usher protein 2132195 fimD 1043196 fimD Pseudomonas putida KT2440 fimbrial biogenesis outer membrane usher protein NP_744044.1 2129700 R 160488 CDS NP_744045.1 26988620 1043194 complement(2132229..2133008) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02753; pili assembly chaperone 2133008 1043194 PP_1890 Pseudomonas putida KT2440 pili assembly chaperone NP_744045.1 2132229 R 160488 CDS NP_744046.1 26988621 1043193 complement(2133062..2133601) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00419; type 1 pili subunit FimI 2133601 fimI 1043193 fimI Pseudomonas putida KT2440 type 1 pili subunit FimI NP_744046.1 2133062 R 160488 CDS NP_744047.1 26988622 1043192 complement(2133821..2134231) 1 NC_002947.3 hypothetical protein 2134231 1043192 PP_1892 Pseudomonas putida KT2440 hypothetical protein NP_744047.1 2133821 R 160488 CDS NP_744048.1 26988623 1043191 complement(2134300..2136747) 1 NC_002947.3 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2136747 fadE 1043191 fadE Pseudomonas putida KT2440 acyl-CoA dehydrogenase NP_744048.1 2134300 R 160488 CDS NP_744049.1 26988624 1043190 2137138..2137761 1 NC_002947.3 identified by match to PFAM protein family HMM PF02798; glutathione S-transferase 2137761 1043190 PP_1894 Pseudomonas putida KT2440 glutathione S-transferase NP_744049.1 2137138 D 160488 CDS NP_744050.1 26988625 1043189 2137895..2138827 1 NC_002947.3 identified by match to PFAM protein family HMM PF00005; ABC transporter ATP-binding protein 2138827 1043189 PP_1895 Pseudomonas putida KT2440 ABC transporter ATP-binding protein NP_744050.1 2137895 D 160488 CDS NP_744051.1 26988626 1043188 2138824..2139603 1 NC_002947.3 identified by match to PFAM protein family HMM PF04306; ABC transporter 2139603 1043188 PP_1896 Pseudomonas putida KT2440 ABC transporter NP_744051.1 2138824 D 160488 CDS NP_744052.1 26988627 1043187 2140262..2142475 1 NC_002947.3 identified by match to PFAM protein family HMM PF03772; DNA internalization-related competence protein ComEC/Rec2 2142475 1043187 PP_1897 Pseudomonas putida KT2440 DNA internalization-related competence protein ComEC/Rec2 NP_744052.1 2140262 D 160488 CDS NP_744053.1 26988628 1043186 2142547..2143221 1 NC_002947.3 identified by match to PFAM protein family HMM PF01618; MotA/TolQ/ExbB proton channel 2143221 1043186 PP_1898 Pseudomonas putida KT2440 MotA/TolQ/ExbB proton channel NP_744053.1 2142547 D 160488 CDS NP_744054.1 26988629 1043184 2143218..2143652 1 NC_002947.3 similar to GP:5531414; identified by sequence similarity; biopolymer transport protein ExbD/TolR 2143652 1043184 PP_1899 Pseudomonas putida KT2440 biopolymer transport protein ExbD/TolR NP_744054.1 2143218 D 160488 CDS NP_744055.1 26988630 1043182 2143649..2144653 1 NC_002947.3 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 2144653 lpxK 1043182 lpxK Pseudomonas putida KT2440 tetraacyldisaccharide 4'-kinase NP_744055.1 2143649 D 160488 CDS NP_744056.1 26988631 1043181 2144698..2144883 1 NC_002947.3 similar to GP:9949079; identified by sequence similarity; hypothetical protein 2144883 1043181 PP_1901 Pseudomonas putida KT2440 hypothetical protein NP_744056.1 2144698 D 160488 CDS NP_744057.1 26988632 1043180 2144880..2145644 1 NC_002947.3 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 2145644 kdsB 1043180 kdsB Pseudomonas putida KT2440 3-deoxy-manno-octulosonate cytidylyltransferase NP_744057.1 2144880 D 160488 CDS NP_744058.1 26988633 1043179 2145644..2146108 1 NC_002947.3 identified by match to PFAM protein family HMM PF01451; protein tyrosine phosphatase 2146108 1043179 PP_1903 Pseudomonas putida KT2440 protein tyrosine phosphatase NP_744058.1 2145644 D 160488 CDS NP_744059.1 26988634 1043178 2146069..2147124 1 NC_002947.3 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 2147124 murB 1043178 murB Pseudomonas putida KT2440 UDP-N-acetylenolpyruvoylglucosamine reductase NP_744059.1 2146069 D 160488 CDS NP_744060.1 26988635 1043177 complement(2147241..2150516) 1 NC_002947.3 similar to SP:P21513; identified by sequence similarity; Rne/Rng family ribonuclease 2150516 rne 1043177 rne Pseudomonas putida KT2440 Rne/Rng family ribonuclease NP_744060.1 2147241 R 160488 CDS NP_744061.1 26988636 1043175 2152274..2152948 1 NC_002947.3 similar to GP:9949073; identified by sequence similarity; HAD superfamily hydrolase 2152948 1043175 PP_1907 Pseudomonas putida KT2440 HAD superfamily hydrolase NP_744061.1 2152274 D 160488 CDS NP_744062.1 26988637 1043174 2152955..2153944 1 NC_002947.3 identified by match to PFAM protein family HMM PF01343; signal peptide peptidase SppA, 36K type 2153944 1043174 PP_1908 Pseudomonas putida KT2440 signal peptide peptidase SppA, 36K type NP_744062.1 2152955 D 160488 CDS NP_744063.1 26988638 1043172 complement(2154154..2154768) 1 NC_002947.3 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 2154768 maf 1043172 maf Pseudomonas putida KT2440 Maf-like protein NP_744063.1 2154154 R 160488 CDS NP_744064.1 26988639 1043171 2154829..2155356 1 NC_002947.3 similar to GP:9949070, and GP:9949070; identified by sequence similarity; hypothetical protein 2155356 1043171 PP_1910 Pseudomonas putida KT2440 hypothetical protein NP_744064.1 2154829 D 160488 CDS NP_744065.1 26988640 1043168 2155370..2155552 1 NC_002947.3 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 2155552 rpmF 1043168 rpmF Pseudomonas putida KT2440 50S ribosomal protein L32 NP_744065.1 2155370 D 160488 CDS NP_744066.1 26988641 1043165 2155556..2156566 1 NC_002947.3 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 2156566 plsX 1043165 plsX Pseudomonas putida KT2440 glycerol-3-phosphate acyltransferase PlsX NP_744066.1 2155556 D 160488 CDS NP_744067.1 26988642 1043164 2156694..2157632 1 NC_002947.3 similar to SP:P25715; identified by sequence similarity; malonyl CoA-ACP transacylase 2157632 fabD 1043164 fabD Pseudomonas putida KT2440 malonyl CoA-ACP transacylase NP_744067.1 2156694 D 160488 CDS NP_744068.1 26988643 1043163 2157648..2158388 1 NC_002947.3 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 2158388 fabG 1043163 fabG Pseudomonas putida KT2440 3-ketoacyl-ACP reductase NP_744068.1 2157648 D 160488 CDS NP_744069.1 26988644 1043162 2158592..2158828 1 NC_002947.3 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 2158828 acpP 1043162 acpP Pseudomonas putida KT2440 acyl carrier protein NP_744069.1 2158592 D 160488 CDS NP_744070.1 26988645 1043161 2159016..2160260 1 NC_002947.3 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 2160260 fabF 1043161 fabF Pseudomonas putida KT2440 3-oxoacyl-ACP synthase NP_744070.1 2159016 D 160488 CDS NP_744071.1 26988646 1043160 2160260..2161075 1 NC_002947.3 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 2161075 pabC 1043160 pabC Pseudomonas putida KT2440 4-amino-4-deoxychorismate lyase NP_744071.1 2160260 D 160488 CDS NP_744072.1 26988647 1043156 2161050..2162315 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00247; aminodeoxychorismate lyase 2162315 1043156 PP_1918 Pseudomonas putida KT2440 aminodeoxychorismate lyase NP_744072.1 2161050 D 160488 CDS NP_744073.1 26988648 1043151 complement(2164314..2165534) 1 NC_002947.3 hypothetical protein 2165534 1043151 PP_1920 Pseudomonas putida KT2440 hypothetical protein NP_744073.1 2164314 R 160488 CDS NP_744074.1 26988649 1043150 2166934..2168097 1 NC_002947.3 hypothetical protein 2168097 1043150 PP_1921 Pseudomonas putida KT2440 hypothetical protein NP_744074.1 2166934 D 160488 CDS NP_744075.1 26988650 1043146 complement(2168785..2169633) 1 NC_002947.3 hypothetical protein 2169633 1043146 PP_1922 Pseudomonas putida KT2440 hypothetical protein NP_744075.1 2168785 R 160488 CDS NP_744076.1 26988651 1043144 complement(2169737..2170738) 1 NC_002947.3 hypothetical protein 2170738 1043144 PP_1923 Pseudomonas putida KT2440 hypothetical protein NP_744076.1 2169737 R 160488 CDS NP_744077.1 26988652 1043142 complement(2171865..2172425) 1 NC_002947.3 similar to GP:4526680; identified by sequence similarity; phosphinothricin N-acetyltransferase 2172425 1043142 PP_1924 Pseudomonas putida KT2440 phosphinothricin N-acetyltransferase NP_744077.1 2171865 R 160488 CDS NP_744078.1 26988653 1043141 complement(2172418..2173500) 1 NC_002947.3 similar to GP:6900907; identified by sequence similarity; monooxygenase 2173500 1043141 PP_1925 Pseudomonas putida KT2440 monooxygenase NP_744078.1 2172418 R 160488 CDS NP_744079.1 26988654 1043140 complement(2173526..2174029) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00782; phosphatase 2174029 1043140 PP_1926 Pseudomonas putida KT2440 phosphatase NP_744079.1 2173526 R 160488 CDS NP_744080.1 26988655 1043138 complement(2174034..2174759) 1 NC_002947.3 similar to GP:11691636; identified by sequence similarity; arsenical resistance protein ArsH 2174759 1043138 PP_1927 Pseudomonas putida KT2440 arsenical resistance protein ArsH NP_744080.1 2174034 R 160488 CDS NP_744081.1 26988656 1043137 complement(2174771..2175259) 1 NC_002947.3 similar to GP:3095052, GB:D10483, SP:P07652, PID:145848, PID:216510, PID:40864, and GB:U00096; identified by sequence similarity; arsenate reductase 2175259 arsC-2 1043137 arsC-2 Pseudomonas putida KT2440 arsenate reductase NP_744081.1 2174771 R 160488 CDS NP_744082.1 26988657 1043133 complement(2175256..2176539) 1 NC_002947.3 similar to SP:P52146; identified by sequence similarity; arsenite efflux transporter 2176539 arsB-1 1043133 arsB-1 Pseudomonas putida KT2440 arsenite efflux transporter NP_744082.1 2175256 R 160488 CDS NP_744083.1 26988658 1043132 complement(2176569..2176955) 1 NC_002947.3 similar to GB:L01087, SP:Q04759, PID:558099, and PID:558100; identified by sequence similarity; arsenic resistance transcriptional regulator 2176955 arsR-1 1043132 arsR-1 Pseudomonas putida KT2440 arsenic resistance transcriptional regulator NP_744083.1 2176569 R 160488 CDS NP_744084.1 26988659 1043131 2177762..2179198 1 NC_002947.3 similar to GP:9947311; identified by sequence similarity; hypothetical protein 2179198 1043131 PP_1931 Pseudomonas putida KT2440 hypothetical protein NP_744084.1 2177762 D 160488 CDS NP_744085.1 26988660 1043129 complement(2179803..2180060) 1 NC_002947.3 hypothetical protein 2180060 1043129 PP_1932 Pseudomonas putida KT2440 hypothetical protein NP_744085.1 2179803 R 160488 CDS NP_744086.1 26988661 1043127 complement(2180519..2180746) 1 NC_002947.3 similar to GB:M73251, SP:P05518, SP:P10327, GB:X07518, GB:X13620, PID:142750, PID:40294, PID:40356, PID:490199, PID:1234884, PID:1234886, PID:1234888, PID:1247717, and PID:2298884; identified by sequence similarity; hypothetical protein 2180746 1043127 PP_1933 Pseudomonas putida KT2440 hypothetical protein NP_744086.1 2180519 R 160488 CDS NP_744087.1 26988662 1043126 2180776..2181432 1 NC_002947.3 hypothetical protein 2181432 1043126 PP_1934 Pseudomonas putida KT2440 hypothetical protein NP_744087.1 2180776 D 160488 CDS NP_744088.1 26988663 1043125 complement(2181724..2182032) 1 NC_002947.3 similar to GP:10432486; identified by sequence similarity; Cro/CI family transcriptional regulator 2182032 1043125 PP_1935 Pseudomonas putida KT2440 Cro/CI family transcriptional regulator NP_744088.1 2181724 R 160488 CDS NP_744089.1 26988664 1043124 complement(2184669..2187605) 1 NC_002947.3 hypothetical protein 2187605 1043124 PP_1936 Pseudomonas putida KT2440 hypothetical protein NP_744089.1 2184669 R 160488 CDS NP_744090.1 26988665 1043123 2189200..2192388 1 NC_002947.3 identified by match to PFAM protein family HMM PF00271; helicase 2192388 1043123 PP_1937 Pseudomonas putida KT2440 helicase NP_744090.1 2189200 D 160488 CDS NP_744091.1 26988666 1043122 2192592..2192903 1 NC_002947.3 hypothetical protein 2192903 1043122 PP_1938 Pseudomonas putida KT2440 hypothetical protein NP_744091.1 2192592 D 160488 CDS NP_744092.1 26988667 1043120 complement(2193511..2195661) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04166; methyl-accepting chemotaxis transducer 2195661 1043120 PP_1940 Pseudomonas putida KT2440 methyl-accepting chemotaxis transducer NP_744092.1 2193511 R 160488 CDS NP_744093.1 26988668 1043119 complement(2196384..2196986) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00440; hypothetical protein 2196986 1043119 PP_1941 Pseudomonas putida KT2440 hypothetical protein NP_744093.1 2196384 R 160488 CDS NP_744094.1 26988669 1043118 complement(2197023..2197985) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 2197985 1043118 PP_1942 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744094.1 2197023 R 160488 CDS NP_744095.1 26988670 1043117 2198238..2199098 1 NC_002947.3 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 2199098 purU 1043117 purU Pseudomonas putida KT2440 formyltetrahydrofolate deformylase NP_744095.1 2198238 D 160488 CDS NP_744096.1 26988671 1043116 2199132..2200409 1 NC_002947.3 similar to GP:6650622; identified by sequence similarity; glycine cleavage system protein T 2200409 1043116 PP_1944 Pseudomonas putida KT2440 glycine cleavage system protein T NP_744096.1 2199132 D 160488 CDS NP_744097.1 26988672 1043115 2200424..2201299 1 NC_002947.3 similar to SP:P24186; identified by sequence similarity; 5,10-methylene-tetrahydrofolate dehydrogenase 2201299 folD-1 1043115 folD-1 Pseudomonas putida KT2440 5,10-methylene-tetrahydrofolate dehydrogenase NP_744097.1 2200424 D 160488 CDS NP_744098.1 26988673 1043114 2201352..2202140 1 NC_002947.3 similar to GP:6580779; identified by sequence similarity; short chain dehydrogenase/reductase oxidoreductase 2202140 1043114 PP_1946 Pseudomonas putida KT2440 short chain dehydrogenase/reductase oxidoreductase NP_744098.1 2201352 D 160488 CDS NP_744099.1 26988674 1043113 2202321..2203310 1 NC_002947.3 similar to GB:L18881, GB:Z35446, GB:Z35447, GB:Z35448, GB:Z35450, GB:Z35454, SP:P48633, PID:408802, PID:516461, PID:516463, PID:516465, PID:516467, PID:516469, GB:L18881, GB:Z35446, GB:Z35447, GB:Z35448, GB:Z35450, GB:Z35454, SP:P48633, PID:408802, PID:516461, PID:516463, PID:516465, PID:516467, and PID:516469; identified by sequence similarity; hypothetical protein 2203310 1043113 PP_1947 Pseudomonas putida KT2440 hypothetical protein NP_744099.1 2202321 D 160488 CDS NP_744100.1 26988675 1043112 2203321..2204799 1 NC_002947.3 similar to GP:5578709; identified by sequence similarity; benzaldehyde dehydrogenase 2204799 1043112 PP_1948 Pseudomonas putida KT2440 benzaldehyde dehydrogenase NP_744100.1 2203321 D 160488 CDS NP_744101.1 26988676 1043110 2204821..2206473 1 NC_002947.3 similar to GP:5531409; identified by sequence similarity; GMC family oxidoreductase 2206473 1043110 PP_1949 Pseudomonas putida KT2440 GMC family oxidoreductase NP_744101.1 2204821 D 160488 CDS NP_744102.1 26988677 1043108 2206567..2207745 1 NC_002947.3 similar to GP:2588989; identified by sequence similarity; hypothetical protein 2207745 1043108 PP_1950 Pseudomonas putida KT2440 hypothetical protein NP_744102.1 2206567 D 160488 CDS NP_744103.1 26988678 1043107 2207786..2208613 1 NC_002947.3 similar to GB:U03057, SP:Q16658, PID:458028, and PID:497269; identified by sequence similarity; short chain dehydrogenase/reductase oxidoreductase 2208613 1043107 PP_1951 Pseudomonas putida KT2440 short chain dehydrogenase/reductase oxidoreductase NP_744103.1 2207786 D 160488 CDS NP_744104.1 26988679 1043103 2208682..2209629 1 NC_002947.3 similar to GP:5708244, and GP:7328280; identified by sequence similarity; metallo-beta-lactamase 2209629 1043103 PP_1952 Pseudomonas putida KT2440 metallo-beta-lactamase NP_744104.1 2208682 D 160488 CDS NP_744105.1 26988680 1043099 2209753..2210562 1 NC_002947.3 similar to GB:J03077, GB:J03015, GB:M86181, GB:M60255, GB:M60258, GB:X57107, GB:D00422, GB:M81355, GB:X57108, PID:1565257, PID:183231, PID:220064, PID:30235, PID:337756, PID:337760, PID:337762, PID:337765, and PID:337767; identified by sequence similarity; short chain dehydrogenase/reductase oxidoreductase 2210562 1043099 PP_1953 Pseudomonas putida KT2440 short chain dehydrogenase/reductase oxidoreductase NP_744105.1 2209753 D 160488 CDS NP_744106.1 26988681 1043096 2210607..2211773 1 NC_002947.3 similar to GP:3334787, and GP:3334787; identified by sequence similarity; hypothetical protein 2211773 1043096 PP_1954 Pseudomonas putida KT2440 hypothetical protein NP_744106.1 2210607 D 160488 CDS NP_744107.1 26988682 1043095 2211866..2213101 1 NC_002947.3 similar to GP:3746884; identified by sequence similarity; cytochrome P450 family protein 2213101 1043095 PP_1955 Pseudomonas putida KT2440 cytochrome P450 family protein NP_744107.1 2211866 D 160488 CDS NP_744108.1 26988683 1043092 2213172..2214140 1 NC_002947.3 hypothetical protein 2214140 1043092 PP_1956 Pseudomonas putida KT2440 hypothetical protein NP_744108.1 2213172 D 160488 CDS NP_744109.1 26988684 1043091 2214230..2215183 1 NC_002947.3 similar to GP:8346965, and SP:Q52186; identified by sequence similarity; Pdr/VanB family oxidoreductase 2215183 1043091 PP_1957 Pseudomonas putida KT2440 Pdr/VanB family oxidoreductase NP_744109.1 2214230 D 160488 CDS NP_744110.1 26988685 1043088 complement(2217344..2218171) 1 NC_002947.3 hypothetical protein 2218171 1043088 PP_1958 Pseudomonas putida KT2440 hypothetical protein NP_744110.1 2217344 R 160488 CDS NP_744111.1 26988686 1043086 complement(2218918..2220078) 1 NC_002947.3 hypothetical protein 2220078 1043086 PP_1959 Pseudomonas putida KT2440 hypothetical protein NP_744111.1 2218918 R 160488 CDS NP_744112.1 26988687 1043085 complement(2220300..2221622) 1 NC_002947.3 hypothetical protein 2221622 1043085 PP_1960 Pseudomonas putida KT2440 hypothetical protein NP_744112.1 2220300 R 160488 CDS NP_744113.1 26988688 1043083 complement(2221626..2222615) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01199; hypothetical protein 2222615 1043083 PP_1961 Pseudomonas putida KT2440 hypothetical protein NP_744113.1 2221626 R 160488 CDS NP_744114.1 26988689 1043081 complement(2222615..2224543) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00589; phage integrase site specific recombinase 2224543 1043081 PP_1962 Pseudomonas putida KT2440 phage integrase site specific recombinase NP_744114.1 2222615 R 160488 CDS NP_744115.1 26988690 1043077 complement(2224626..2226629) 1 NC_002947.3 hypothetical protein 2226629 1043077 PP_1963 Pseudomonas putida KT2440 hypothetical protein NP_744115.1 2224626 R 160488 CDS NP_744116.1 26988691 1043074 complement(2226595..2227398) 1 NC_002947.3 similar to GP:1942708, SP:P37029, and PID:580773; identified by sequence similarity; deoxynucleotide monophosphate kinase 2227398 1043074 PP_1964 Pseudomonas putida KT2440 deoxynucleotide monophosphate kinase NP_744116.1 2226595 R 160488 CDS NP_744117.1 26988692 1043069 2227845..2228831 1 NC_002947.3 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 2228831 holB 1043069 holB Pseudomonas putida KT2440 DNA polymerase III subunit delta' NP_744117.1 2227845 D 160488 CDS NP_744118.1 26988693 1043068 2228862..2229644 1 NC_002947.3 identified by match to PFAM protein family HMM PF01026; TatD family deoxyribonuclease 2229644 1043068 PP_1967 Pseudomonas putida KT2440 TatD family deoxyribonuclease NP_744118.1 2228862 D 160488 CDS NP_744119.1 26988694 1043066 2230034..2230669 1 NC_002947.3 identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 2230669 1043066 PP_1968 Pseudomonas putida KT2440 TetR family transcriptional regulator NP_744119.1 2230034 D 160488 CDS NP_744120.1 26988695 1043065 2230781..2231794 1 NC_002947.3 similar to GB:X64364, GB:L10240, GB:D45131, SP:P35613, PID:1209374, PID:1220307, PID:34449, PID:409357, and PID:633069; identified by sequence similarity; molybdenum cofactor biosynthesis protein A 2231794 1043065 PP_1969 Pseudomonas putida KT2440 molybdenum cofactor biosynthesis protein A NP_744120.1 2230781 D 160488 CDS NP_744121.1 26988696 1043064 2231861..2232466 1 NC_002947.3 lipoprotein 2232466 1043064 PP_1970 Pseudomonas putida KT2440 lipoprotein NP_744121.1 2231861 D 160488 CDS NP_744122.1 26988697 1043063 2232459..2233037 1 NC_002947.3 hypothetical protein 2233037 1043063 PP_1971 Pseudomonas putida KT2440 hypothetical protein NP_744122.1 2232459 D 160488 CDS NP_744123.1 26988698 1043062 complement(2233406..2234602) 1 NC_002947.3 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2234602 tyrB-1 1043062 tyrB-1 Pseudomonas putida KT2440 aromatic amino acid aminotransferase NP_744123.1 2233406 R 160488 CDS NP_744124.1 26988699 1043061 complement(2234736..2234834) 1 NC_002947.3 hypothetical protein 2234834 1043061 PP_1973 Pseudomonas putida KT2440 hypothetical protein NP_744124.1 2234736 R 160488 CDS NP_744125.1 26988700 1043060 2234887..2236902 1 NC_002947.3 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2236902 uvrB 1043060 uvrB Pseudomonas putida KT2440 excinuclease ABC subunit B NP_744125.1 2234887 D 160488 CDS NP_744126.1 26988701 1043059 complement(2237030..2238580) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00880; EmrB/QacA family drug resistance transporter 2238580 1043059 PP_1975 Pseudomonas putida KT2440 EmrB/QacA family drug resistance transporter NP_744126.1 2237030 R 160488 CDS NP_744127.1 26988702 1043057 complement(2238570..2239733) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01730; secretion protein HlyD family protein 2239733 1043057 PP_1976 Pseudomonas putida KT2440 secretion protein HlyD family protein NP_744127.1 2238570 R 160488 CDS NP_744128.1 26988703 1043056 2239769..2241250 1 NC_002947.3 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 2241250 gltX 1043056 gltX Pseudomonas putida KT2440 glutamyl-tRNA synthetase NP_744128.1 2239769 D 160488 CDS NP_744129.1 26988704 1043054 2242425..2242964 1 NC_002947.3 identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 2242964 1043054 PP_1978 Pseudomonas putida KT2440 TetR family transcriptional regulator NP_744129.1 2242425 D 160488 CDS NP_744130.1 26988705 1043051 2242980..2243861 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01738; hydrolase 2243861 1043051 PP_1979 Pseudomonas putida KT2440 hydrolase NP_744130.1 2242980 D 160488 CDS NP_744131.1 26988706 1043050 2243966..2244400 1 NC_002947.3 identified by match to PFAM protein family HMM PF03061; thioesterase 2244400 1043050 PP_1980 Pseudomonas putida KT2440 thioesterase NP_744131.1 2243966 D 160488 CDS NP_744132.1 26988707 1043049 2244452..2245423 1 NC_002947.3 similar to GP:9949242, GB:L13203, SP:Q12951, PID:1911185, and PID:563168; identified by sequence similarity; NifR3/Smm1 family protein 2245423 1043049 PP_1981 Pseudomonas putida KT2440 NifR3/Smm1 family protein NP_744132.1 2244452 D 160488 CDS NP_744133.1 26988708 1043047 2245759..2246208 1 NC_002947.3 similar to GP:9949238; identified by sequence similarity; heat shock protein Hsp20 2246208 ibpA 1043047 ibpA Pseudomonas putida KT2440 heat shock protein Hsp20 NP_744133.1 2245759 D 160488 CDS NP_744134.1 26988709 1043046 complement(2246299..2249709) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00229; sensory box protein 2249709 1043046 PP_1983 Pseudomonas putida KT2440 sensory box protein NP_744134.1 2246299 R 160488 CDS NP_744135.1 26988710 1043043 complement(2249657..2250535) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 2250535 1043043 PP_1984 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744135.1 2249657 R 160488 CDS NP_744136.1 26988711 1043041 2250667..2252100 1 NC_002947.3 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 2252100 leuC 1043041 leuC Pseudomonas putida KT2440 isopropylmalate isomerase large subunit NP_744136.1 2250667 D 160488 CDS NP_744137.1 26988712 1043040 2252097..2252741 1 NC_002947.3 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 2252741 leuD 1043040 leuD Pseudomonas putida KT2440 isopropylmalate isomerase small subunit NP_744137.1 2252097 D 160488 CDS NP_744138.1 26988713 1043038 2252860..2253624 1 NC_002947.3 identified by match to PFAM protein family HMM PF02390; UbiE/COQ5 family methlytransferase 2253624 1043038 PP_1987 Pseudomonas putida KT2440 UbiE/COQ5 family methlytransferase NP_744138.1 2252860 D 160488 CDS NP_744139.1 26988714 1043037 2253679..2254761 1 NC_002947.3 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 2254761 leuB 1043037 leuB Pseudomonas putida KT2440 3-isopropylmalate dehydrogenase NP_744139.1 2253679 D 160488 CDS NP_744140.1 26988715 1043035 2254825..2255937 1 NC_002947.3 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 2255937 asd 1043035 asd Pseudomonas putida KT2440 aspartate-semialdehyde dehydrogenase NP_744140.1 2254825 D 160488 CDS NP_744141.1 26988716 1043034 2256641..2257942 1 NC_002947.3 identified by match to PFAM protein family HMM PF01609; ISPpu8, transposase 2257942 1043034 PP_1990 Pseudomonas putida KT2440 ISPpu8, transposase NP_744141.1 2256641 D 160488 CDS NP_744142.1 26988717 1043033 complement(2258050..2258235) 1 NC_002947.3 hypothetical protein 2258235 1043033 PP_1991 Pseudomonas putida KT2440 hypothetical protein NP_744142.1 2258050 R 160488 CDS NP_744143.1 26988718 1043027 2258334..2259338 1 NC_002947.3 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 2259338 1043027 PP_1992 Pseudomonas putida KT2440 aspartate-semialdehyde dehydrogenase NP_744143.1 2258334 D 160488 CDS NP_744144.1 26988719 1043026 2259410..2262145 1 NC_002947.3 similar to GP:9949226, and GP:3237312; identified by sequence similarity; peptidoglycan-binding LysM 2262145 1043026 PP_1993 Pseudomonas putida KT2440 peptidoglycan-binding LysM NP_744144.1 2259410 D 160488 CDS NP_744145.1 26988720 1043024 2263205..2263825 1 NC_002947.3 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 2263825 trpF 1043024 trpF Pseudomonas putida KT2440 N-(5'-phosphoribosyl)anthranilate isomerase NP_744145.1 2263205 D 160488 CDS NP_744146.1 26988721 1043023 2264048..2264941 1 NC_002947.3 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 2264941 accD 1043023 accD Pseudomonas putida KT2440 acetyl-CoA carboxylase subunit beta NP_744146.1 2264048 D 160488 CDS NP_744147.1 26988722 1043022 2264938..2266248 1 NC_002947.3 similar to GB:X60957, GB:A16753, SP:P35590, PID:396815, PID:512414, and PID:512416; identified by sequence similarity; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 2266248 folC 1043022 folC Pseudomonas putida KT2440 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase NP_744147.1 2264938 D 160488 CDS NP_744148.1 26988723 1043018 2266232..2266876 1 NC_002947.3 sporulation domain-containing protein 2266876 1043018 PP_1998 Pseudomonas putida KT2440 sporulation domain-containing protein NP_744148.1 2266232 D 160488 CDS NP_744149.1 26988724 1043017 2267073..2267630 1 NC_002947.3 similar to GB:M93311, GB:X89604, GB:S72043, SP:P02795, SP:P04731, SP:P04732, SP:P04733, SP:P07438, SP:P13640, SP:P25713, SP:P80295, SP:P80296, SP:P80297, PID:187547, PID:517351, and PID:914851; identified by sequence similarity; colicin V production protein 2267630 1043017 PP_1999 Pseudomonas putida KT2440 colicin V production protein NP_744149.1 2267073 D 160488 CDS NP_744150.1 26988725 1043015 2267673..2269178 1 NC_002947.3 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 2269178 purF 1043015 purF Pseudomonas putida KT2440 amidophosphoribosyltransferase NP_744150.1 2267673 D 160488 CDS NP_744151.1 26988726 1043012 2269195..2270406 1 NC_002947.3 catalyzes the conversion of O-succinylhomoserine into homocysteine; O-succinylhomoserine sulfhydrylase 2270406 metZ 1043012 metZ Pseudomonas putida KT2440 O-succinylhomoserine sulfhydrylase NP_744151.1 2269195 D 160488 CDS NP_744152.1 26988727 1043011 2270403..2271176 1 NC_002947.3 similar to GB:M36718, GB:X81030, GB:M22596, GB:X13809, SP:P09086, PID:189363, PID:189367, PID:189413, PID:35129, PID:35132, PID:35165, and PID:727160; identified by sequence similarity; oxidoreductase 2271176 1043011 PP_2002 Pseudomonas putida KT2440 oxidoreductase NP_744152.1 2270403 D 160488 CDS NP_744153.1 26988728 1043009 2272091..2273032 1 NC_002947.3 similar to GP:8885520, and GP:8885520; identified by sequence similarity; hypothetical protein 2273032 1043009 PP_2003 Pseudomonas putida KT2440 hypothetical protein NP_744153.1 2272091 D 160488 CDS NP_744154.1 26988729 1042999 complement(2273323..2274363) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 2274363 1042999 PP_2004 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_744154.1 2273323 R 160488 CDS NP_744155.1 26988730 1042996 complement(2274368..2275486) 1 NC_002947.3 similar to GP:9949202; identified by sequence similarity; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 2275486 1042996 PP_2005 Pseudomonas putida KT2440 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase NP_744155.1 2274368 R 160488 CDS NP_744156.1 26988731 1042994 complement(2275675..2277453) 1 NC_002947.3 hypothetical protein 2277453 1042994 PP_2006 Pseudomonas putida KT2440 hypothetical protein NP_744156.1 2275675 R 160488 CDS NP_744157.1 26988732 1042987 complement(2277344..2278576) 1 NC_002947.3 similar to GB:D14445, SP:Q07411, and PID:286035; identified by sequence similarity; P-47-like protein 2278576 1042987 PP_2007 Pseudomonas putida KT2440 P-47-like protein NP_744157.1 2277344 R 160488 CDS NP_744158.1 26988733 1042976 2278858..2280939 1 NC_002947.3 similar to SP:P42593; identified by sequence similarity; NADH:flavin oxidoreductase 2280939 fadH 1042976 fadH Pseudomonas putida KT2440 NADH:flavin oxidoreductase NP_744158.1 2278858 D 160488 CDS NP_744159.1 26988734 1042971 2281176..2282069 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01274; 1-aminocyclopropane-1-carboxylate deaminase 2282069 1042971 PP_2009 Pseudomonas putida KT2440 1-aminocyclopropane-1-carboxylate deaminase NP_744159.1 2281176 D 160488 CDS NP_744160.1 26988735 1042969 complement(2282060..2282605) 1 NC_002947.3 similar to SP:P08732; identified by sequence similarity; cytochrome B561 2282605 1042969 PP_2010 Pseudomonas putida KT2440 cytochrome B561 NP_744160.1 2282060 R 160488 CDS NP_744161.1 26988736 1042964 complement(2282834..2283883) 1 NC_002947.3 hypothetical protein 2283883 1042964 PP_2011 Pseudomonas putida KT2440 hypothetical protein NP_744161.1 2282834 R 160488 CDS NP_744162.1 26988737 1042961 2283798..2284745 1 NC_002947.3 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2284745 ppnK 1042961 ppnK Pseudomonas putida KT2440 inorganic polyphosphate/ATP-NAD kinase NP_744162.1 2283798 D 160488 CDS NP_744163.1 26988738 1042954 2284745..2285716 1 NC_002947.3 identified by match to PFAM protein family HMM PF00149; metallophosphoesterase 2285716 1042954 PP_2013 Pseudomonas putida KT2440 metallophosphoesterase NP_744163.1 2284745 D 160488 CDS NP_744164.1 26988739 1042941 2285713..2286600 1 NC_002947.3 similar to GP:9949195; identified by sequence similarity; rhomboid family protein 2286600 1042941 PP_2014 Pseudomonas putida KT2440 rhomboid family protein NP_744164.1 2285713 D 160488 CDS NP_744165.1 26988740 1042938 2286614..2286874 1 NC_002947.3 hypothetical protein 2286874 1042938 PP_2015 Pseudomonas putida KT2440 hypothetical protein NP_744165.1 2286614 D 160488 CDS NP_744166.1 26988741 1042926 2286871..2287701 1 NC_002947.3 similar to GP:9949192; identified by sequence similarity; hypothetical protein 2287701 1042926 PP_2016 Pseudomonas putida KT2440 hypothetical protein NP_744166.1 2286871 D 160488 CDS NP_744167.1 26988742 1042924 2287715..2290372 1 NC_002947.3 similar to SP:P04825; identified by sequence similarity; aminopeptidase 2290372 pepN 1042924 pepN Pseudomonas putida KT2440 aminopeptidase NP_744167.1 2287715 D 160488 CDS NP_744168.1 26988743 1042916 2290647..2291606 1 NC_002947.3 identified by match to PFAM protein family HMM PF02012; BNR repeat-containing protein 2291606 1042916 PP_2018 Pseudomonas putida KT2440 BNR repeat-containing protein NP_744168.1 2290647 D 160488 CDS NP_744169.1 26988744 1042911 2291603..2294002 1 NC_002947.3 similar to GP:9949187, and GP:9949187; identified by sequence similarity; hypothetical protein 2294002 1042911 PP_2019 Pseudomonas putida KT2440 hypothetical protein NP_744169.1 2291603 D 160488 CDS NP_744170.1 26988745 1042909 2294003..2294356 1 NC_002947.3 hypothetical protein 2294356 1042909 PP_2020 Pseudomonas putida KT2440 hypothetical protein NP_744170.1 2294003 D 160488 CDS NP_744171.1 26988746 1042907 2294322..2295452 1 NC_002947.3 similar to GP:9950416; identified by sequence similarity; hypothetical protein 2295452 1042907 PP_2021 Pseudomonas putida KT2440 hypothetical protein NP_744171.1 2294322 D 160488 CDS NP_744172.1 26988747 1042905 complement(2295442..2295675) 1 NC_002947.3 hypothetical protein 2295675 1042905 PP_2022 Pseudomonas putida KT2440 hypothetical protein NP_744172.1 2295442 R 160488 CDS NP_744173.1 26988748 1042903 complement(2295884..2296483) 1 NC_002947.3 similar to GP:11177841; identified by sequence similarity; glutathione S-transferase 2296483 1042903 PP_2023 Pseudomonas putida KT2440 glutathione S-transferase NP_744173.1 2295884 R 160488 CDS NP_744174.1 26988749 1042900 complement(2296474..2300118) 1 NC_002947.3 similar to GB:X03833, GB:X02851, GB:M15329, GB:X56086, SP:P01583, PID:186278, PID:186280, PID:33786, PID:33795, PID:35661, and PID:755744; identified by sequence similarity; SMC domain-containing protein 2300118 sbcC 1042900 sbcC Pseudomonas putida KT2440 SMC domain-containing protein NP_744174.1 2296474 R 160488 CDS NP_744175.1 26988750 1042899 complement(2300115..2301353) 1 NC_002947.3 similar to GB:L11329, GB:U23853, SP:Q05923, PID:292376, and PID:775212; identified by sequence similarity; nuclease SbcCD subunit D 2301353 sbcD 1042899 sbcD Pseudomonas putida KT2440 nuclease SbcCD subunit D NP_744175.1 2300115 R 160488 CDS NP_744176.1 26988751 1042895 complement(2302502..2302768) 1 NC_002947.3 hypothetical protein 2302768 1042895 PP_2026 Pseudomonas putida KT2440 hypothetical protein NP_744176.1 2302502 R 160488 CDS NP_744177.1 26988752 1042891 complement(2303207..2304838) 1 NC_002947.3 similar to GP:9949182; identified by sequence similarity; hypothetical protein 2304838 1042891 PP_2027 Pseudomonas putida KT2440 hypothetical protein NP_744177.1 2303207 R 160488 CDS NP_744178.1 26988753 1042890 complement(2304835..2306553) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00515; hypothetical protein 2306553 1042890 PP_2028 Pseudomonas putida KT2440 hypothetical protein NP_744178.1 2304835 R 160488 CDS NP_744179.1 26988754 1042889 complement(2306550..2307626) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00092; von Willebrand factor A 2307626 1042889 PP_2029 Pseudomonas putida KT2440 von Willebrand factor A NP_744179.1 2306550 R 160488 CDS NP_744180.1 26988755 1042888 complement(2307619..2308113) 1 NC_002947.3 hypothetical protein 2308113 1042888 PP_2030 Pseudomonas putida KT2440 hypothetical protein NP_744180.1 2307619 R 160488 CDS NP_744181.1 26988756 1042887 complement(2308110..2309066) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01882; hypothetical protein 2309066 1042887 PP_2031 Pseudomonas putida KT2440 hypothetical protein NP_744181.1 2308110 R 160488 CDS NP_744182.1 26988757 1042884 complement(2309059..2310018) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00004; ATPase 2310018 1042884 PP_2032 Pseudomonas putida KT2440 ATPase NP_744182.1 2309059 R 160488 CDS NP_744183.1 26988758 1042883 2310196..2311557 1 NC_002947.3 hypothetical protein 2311557 1042883 PP_2033 Pseudomonas putida KT2440 hypothetical protein NP_744183.1 2310196 D 160488 CDS NP_744184.1 26988759 1042882 complement(2311593..2312852) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03631; major facilitator superfamily protein 2312852 1042882 PP_2034 Pseudomonas putida KT2440 major facilitator superfamily protein NP_744184.1 2311593 R 160488 CDS NP_744185.1 26988760 1042881 complement(2312870..2314084) 1 NC_002947.3 similar to GP:7542441; identified by sequence similarity; benzoate transporter 2314084 benE-1 1042881 benE-1 Pseudomonas putida KT2440 benzoate transporter NP_744185.1 2312870 R 160488 CDS NP_744186.1 26988761 1042880 complement(2314234..2315121) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00674; dihydrodipicolinate synthetase 2315121 1042880 PP_2036 Pseudomonas putida KT2440 dihydrodipicolinate synthetase NP_744186.1 2314234 R 160488 CDS NP_744187.1 26988762 1042879 complement(2315166..2315948) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01086; class II aldolase/adducin domain-containing protein 2315948 1042879 PP_2037 Pseudomonas putida KT2440 class II aldolase/adducin domain-containing protein NP_744187.1 2315166 R 160488 CDS NP_744188.1 26988763 1042877 2316044..2317741 1 NC_002947.3 similar to GP:5881868; identified by sequence similarity; long-chain-fatty-acid--CoA ligase 2317741 1042877 PP_2038 Pseudomonas putida KT2440 long-chain-fatty-acid--CoA ligase NP_744188.1 2316044 D 160488 CDS NP_744189.1 26988764 1042876 2317756..2318922 1 NC_002947.3 similar to GP:5881869; identified by sequence similarity; acyl-CoA dehydrogenase 2318922 1042876 PP_2039 Pseudomonas putida KT2440 acyl-CoA dehydrogenase NP_744189.1 2317756 D 160488 CDS NP_744190.1 26988765 1042875 2318985..2320280 1 NC_002947.3 similar to GP:5881870; identified by sequence similarity; major facilitator family transporter 2320280 1042875 PP_2040 Pseudomonas putida KT2440 major facilitator family transporter NP_744190.1 2318985 D 160488 CDS NP_744191.1 26988766 1042873 complement(2320293..2321237) 1 NC_002947.3 similar to GP:3152946; identified by sequence similarity; LysR family transcriptional regulator 2321237 1042873 PP_2041 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744191.1 2320293 R 160488 CDS NP_744192.1 26988767 1042872 2321449..2323305 1 NC_002947.3 similar to GP:9950108; identified by sequence similarity; hypothetical protein 2323305 1042872 PP_2042 Pseudomonas putida KT2440 hypothetical protein NP_744192.1 2321449 D 160488 CDS NP_744193.1 26988768 1042871 2323310..2324638 1 NC_002947.3 similar to GP:9946236; identified by sequence similarity; hypothetical protein 2324638 1042871 PP_2043 Pseudomonas putida KT2440 hypothetical protein NP_744193.1 2323310 D 160488 CDS NP_744194.1 26988769 1042870 2324638..2325024 1 NC_002947.3 similar to GP:5441761, and GP:5441761; identified by sequence similarity; hypothetical protein 2325024 1042870 PP_2044 Pseudomonas putida KT2440 hypothetical protein NP_744194.1 2324638 D 160488 CDS NP_744195.1 26988770 1042868 complement(2325339..2327300) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00753; metallo-beta-lactamase 2327300 1042868 PP_2045 Pseudomonas putida KT2440 metallo-beta-lactamase NP_744195.1 2325339 R 160488 CDS NP_744196.1 26988771 1042867 complement(2327402..2328325) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 2328325 1042867 PP_2046 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744196.1 2327402 R 160488 CDS NP_744197.1 26988772 1042865 2328410..2329648 1 NC_002947.3 identified by match to PFAM protein family HMM PF00725; 3-hydroxyacyl-CoA dehydrogenase 2329648 1042865 PP_2047 Pseudomonas putida KT2440 3-hydroxyacyl-CoA dehydrogenase NP_744197.1 2328410 D 160488 CDS NP_744198.1 26988773 1042864 2329570..2331420 1 NC_002947.3 similar to GP:9951491; identified by sequence similarity; acyl-CoA dehydrogenase 2331420 1042864 PP_2048 Pseudomonas putida KT2440 acyl-CoA dehydrogenase NP_744198.1 2329570 D 160488 CDS NP_744199.1 26988774 1042863 2331454..2332617 1 NC_002947.3 identified by match to PFAM protein family HMM PF03473; iron-containing alcohol dehydrogenase 2332617 1042863 PP_2049 Pseudomonas putida KT2440 iron-containing alcohol dehydrogenase NP_744199.1 2331454 D 160488 CDS NP_744200.1 26988775 1042862 2332617..2333069 1 NC_002947.3 identified by match to PFAM protein family HMM PF03061; hypothetical protein 2333069 1042862 PP_2050 Pseudomonas putida KT2440 hypothetical protein NP_744200.1 2332617 D 160488 CDS NP_744201.1 26988776 1042860 2333066..2334250 1 NC_002947.3 similar to GB:M34254, SP:P00313, PID:149775, GB:M34254, SP:P00313, and PID:149775; identified by sequence similarity; acetyl-CoA acetyltransferase 2334250 atoB 1042860 atoB Pseudomonas putida KT2440 acetyl-CoA acetyltransferase NP_744201.1 2333066 D 160488 CDS NP_744202.1 26988777 1042859 complement(2334330..2336453) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01509; HAD superfamily hydrolase 2336453 1042859 PP_2052 Pseudomonas putida KT2440 HAD superfamily hydrolase NP_744202.1 2334330 R 160488 CDS NP_744203.1 26988778 1042858 2336850..2337146 1 NC_002947.3 hypothetical protein 2337146 1042858 PP_2053 Pseudomonas putida KT2440 hypothetical protein NP_744203.1 2336850 D 160488 CDS NP_744204.1 26988779 1042857 complement(2337165..2338058) 1 NC_002947.3 similar to GB:X60036, GB:X77337, and SP:Q00325; identified by sequence similarity; LysR family transcriptional regulator 2338058 1042857 PP_2054 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744204.1 2337165 R 160488 CDS NP_744205.1 26988780 1042856 2338205..2339284 1 NC_002947.3 similar to SP:P38487, PID:500611, PID:840668, SP:P38487, PID:500611, and PID:840668; identified by sequence similarity; hypothetical protein 2339284 1042856 PP_2055 Pseudomonas putida KT2440 hypothetical protein NP_744205.1 2338205 D 160488 CDS NP_744206.1 26988781 1042852 2339344..2340663 1 NC_002947.3 similar to GB:J04543, SP:P20073, and PID:338244; identified by sequence similarity; sodium:dicarboxylate symporter 2340663 dctM 1042852 dctM Pseudomonas putida KT2440 sodium:dicarboxylate symporter NP_744206.1 2339344 D 160488 CDS NP_744207.1 26988782 1042850 2340778..2342082 1 NC_002947.3 identified by match to PFAM protein family HMM PF03600; citrate transporter 2342082 1042850 PP_2057 Pseudomonas putida KT2440 citrate transporter NP_744207.1 2340778 D 160488 CDS NP_744208.1 26988783 1042849 2342146..2343399 1 NC_002947.3 identified by match to PFAM protein family HMM PF03573; porin 2343399 1042849 PP_2058 Pseudomonas putida KT2440 porin NP_744208.1 2342146 D 160488 CDS NP_744209.1 26988784 1042848 complement(2343452..2343700) 1 NC_002947.3 similar to GB:M60264, PID:144091, GB:M60264, and PID:144091; identified by sequence similarity; CsbD family protein 2343700 1042848 PP_2059 Pseudomonas putida KT2440 CsbD family protein NP_744209.1 2343452 R 160488 CDS NP_744210.1 26988785 1042843 complement(2343847..2344302) 1 NC_002947.3 similar to SP:P09888, PID:780269, SP:P09888, and PID:780269; identified by sequence similarity; transcriptional regulator SoxR 2344302 soxR 1042843 soxR Pseudomonas putida KT2440 transcriptional regulator SoxR NP_744210.1 2343847 R 160488 CDS NP_744211.1 26988786 1042839 complement(2344434..2344646) 1 NC_002947.3 hypothetical protein 2344646 1042839 PP_2061 Pseudomonas putida KT2440 hypothetical protein NP_744211.1 2344434 R 160488 CDS NP_744212.1 26988787 1042838 complement(2344721..2345344) 1 NC_002947.3 similar to GP:1070029, and GP:2950328; identified by sequence similarity; hypothetical protein 2345344 1042838 PP_2062 Pseudomonas putida KT2440 hypothetical protein NP_744212.1 2344721 R 160488 CDS NP_744213.1 26988788 1042836 2346543..2346647 1 NC_002947.3 hypothetical protein 2346647 1042836 PP_2063 Pseudomonas putida KT2440 hypothetical protein NP_744213.1 2346543 D 160488 CDS NP_744214.1 26988789 1042835 2346697..2347794 1 NC_002947.3 similar to GB:U12892, and PID:530857; identified by sequence similarity; RND family efflux transporter MFP subunit 2347794 1042835 PP_2064 Pseudomonas putida KT2440 RND family efflux transporter MFP subunit NP_744214.1 2346697 D 160488 CDS NP_744215.1 26988790 1042833 2347791..2350874 1 NC_002947.3 identified by match to PFAM protein family HMM PF03970; acriflavin resistance protein 2350874 1042833 PP_2065 Pseudomonas putida KT2440 acriflavin resistance protein NP_744215.1 2347791 D 160488 CDS NP_744216.1 26988791 1042818 complement(2350928..2351692) 1 NC_002947.3 similar to GP:10173529; identified by sequence similarity; GntR family transcriptional regulator 2351692 1042818 PP_2066 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_744216.1 2350928 R 160488 CDS NP_744217.1 26988792 1042817 complement(2351747..2353330) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04226; EmrB/QacA family drug resistance transporter 2353330 1042817 PP_2067 Pseudomonas putida KT2440 EmrB/QacA family drug resistance transporter NP_744217.1 2351747 R 160488 CDS NP_744218.1 26988793 1042816 complement(2353251..2354528) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01730; multidrug efflux MFS membrane fusion protein 2354528 1042816 PP_2068 Pseudomonas putida KT2440 multidrug efflux MFS membrane fusion protein NP_744218.1 2353251 R 160488 CDS NP_744219.1 26988794 1042813 complement(2354586..2356007) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02321; multidrug efflux MFS outer membrane protein 2356007 1042813 PP_2069 Pseudomonas putida KT2440 multidrug efflux MFS outer membrane protein NP_744219.1 2354586 R 160488 CDS NP_744220.1 26988795 1042810 complement(2356108..2356818) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 2356818 1042810 PP_2070 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_744220.1 2356108 R 160488 CDS NP_744221.1 26988796 1042806 complement(2356988..2357374) 1 NC_002947.3 hypothetical protein 2357374 1042806 PP_2071 Pseudomonas putida KT2440 hypothetical protein NP_744221.1 2356988 R 160488 CDS NP_744222.1 26988797 1042798 complement(2357483..2358307) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 2358307 1042798 PP_2072 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_744222.1 2357483 R 160488 CDS NP_744223.1 26988798 1042797 complement(2358327..2358842) 1 NC_002947.3 similar to GP:9947377; identified by sequence similarity; acetyltransferase 2358842 1042797 PP_2073 Pseudomonas putida KT2440 acetyltransferase NP_744223.1 2358327 R 160488 CDS NP_744224.1 26988799 1042795 2359040..2359963 1 NC_002947.3 similar to GP:3646369; identified by sequence similarity; LysR family transcriptional regulator 2359963 1042795 PP_2074 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744224.1 2359040 D 160488 CDS NP_744225.1 26988800 1042793 complement(2360020..2361153) 1 NC_002947.3 hypothetical protein 2361153 1042793 PP_2075 Pseudomonas putida KT2440 hypothetical protein NP_744225.1 2360020 R 160488 CDS NP_744226.1 26988801 1042792 complement(2361150..2363873) 1 NC_002947.3 hypothetical protein 2363873 1042792 PP_2076 Pseudomonas putida KT2440 hypothetical protein NP_744226.1 2361150 R 160488 CDS NP_744227.1 26988802 1042789 complement(2364206..2365438) 1 NC_002947.3 catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase 2365438 lysA-1 1042789 lysA-1 Pseudomonas putida KT2440 diaminopimelate decarboxylase NP_744227.1 2364206 R 160488 CDS NP_744228.1 26988803 1042785 2365562..2366467 1 NC_002947.3 activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; LysR family transcriptional regulator 2366467 1042785 PP_2078 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744228.1 2365562 D 160488 CDS NP_744229.1 26988804 1042776 complement(2366551..2367009) 1 NC_002947.3 hypothetical protein 2367009 1042776 PP_2079 Pseudomonas putida KT2440 hypothetical protein NP_744229.1 2366551 R 160488 CDS NP_744230.1 26988805 1042774 2367054..2372045 1 NC_002947.3 similar to GP:9949175, and GP:9949175; identified by sequence similarity; NAD-glutamate dehydrogenase 2372045 1042774 PP_2080 Pseudomonas putida KT2440 NAD-glutamate dehydrogenase NP_744230.1 2367054 D 160488 CDS NP_744231.1 26988806 1042771 complement(2372157..2372975) 1 NC_002947.3 similar to GP:9947748; identified by sequence similarity; hypothetical protein 2372975 1042771 PP_2081 Pseudomonas putida KT2440 hypothetical protein NP_744231.1 2372157 R 160488 CDS NP_744232.1 26988807 1042760 2373167..2375542 1 NC_002947.3 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2375542 ppsA 1042760 ppsA Pseudomonas putida KT2440 phosphoenolpyruvate synthase NP_744232.1 2373167 D 160488 CDS NP_744233.1 26988808 1042757 2375644..2376636 1 NC_002947.3 similar to GP:5668607; identified by sequence similarity; lipase 2376636 1042757 PP_2083 Pseudomonas putida KT2440 lipase NP_744233.1 2375644 D 160488 CDS NP_744234.1 26988809 1042755 2376841..2377332 1 NC_002947.3 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 2377332 menG 1042755 menG Pseudomonas putida KT2440 ribonuclease activity regulator protein RraA NP_744234.1 2376841 D 160488 CDS NP_744235.1 26988810 1042751 2377357..2378355 1 NC_002947.3 similar to GP:5668609, and GP:5668609; identified by sequence similarity; cmaX protein 2378355 cmaX 1042751 cmaX Pseudomonas putida KT2440 cmaX protein NP_744235.1 2377357 D 160488 CDS NP_744236.1 26988811 1042748 2378443..2378715 1 NC_002947.3 similar to GP:5668603, and GP:5668603; identified by sequence similarity; hypothetical protein 2378715 crfX 1042748 crfX Pseudomonas putida KT2440 hypothetical protein NP_744236.1 2378443 D 160488 CDS NP_744237.1 26988812 1042734 2378718..2379542 1 NC_002947.3 similar to GP:5668604, and GP:5668604; identified by sequence similarity; TM helix repeat-containing protein 2379542 cmpX 1042734 cmpX Pseudomonas putida KT2440 TM helix repeat-containing protein NP_744237.1 2378718 D 160488 CDS NP_744238.1 26988813 1042732 2379632..2380222 1 NC_002947.3 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas fluorescens and P. aeruginosa regulates outer membrane protein OprF expression; RNA polymerase sigma factor SigX 2380222 sigX 1042732 sigX Pseudomonas putida KT2440 RNA polymerase sigma factor SigX NP_744238.1 2379632 D 160488 CDS NP_744239.1 26988814 1042726 2380334..2381368 1 NC_002947.3 similar to GP:4580972, and GP:4580972; identified by sequence similarity; OmpF family protein 2381368 oprF 1042726 oprF Pseudomonas putida KT2440 OmpF family protein NP_744239.1 2380334 D 160488 CDS NP_744240.1 26988815 1042724 complement(2381455..2382195) 1 NC_002947.3 catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1; uroporphyrin-III C-methyltransferase 2382195 cobA-1 1042724 cobA-1 Pseudomonas putida KT2440 uroporphyrin-III C-methyltransferase NP_744240.1 2381455 R 160488 CDS NP_744241.1 26988816 1042722 complement(2382223..2383893) 1 NC_002947.3 similar to GP:9947763; identified by sequence similarity; serine/threonine-protein kinase 2383893 1042722 PP_2091 Pseudomonas putida KT2440 serine/threonine-protein kinase NP_744241.1 2382223 R 160488 CDS NP_744242.1 26988817 1042709 complement(2383903..2385138) 1 NC_002947.3 similar to GB:M19364, SP:P07316, PID:181099, and PID:181118; identified by sequence similarity; nitrite transporter 2385138 nasA 1042709 nasA Pseudomonas putida KT2440 nitrite transporter NP_744242.1 2383903 R 160488 CDS NP_744243.1 26988818 1044944 complement(2385299..2385874) 1 NC_002947.3 similar to GB:U05040, and PID:460152; identified by sequence similarity; response regulator receiver and ANTAR domain-containing protein 2385874 nasT 1044944 nasT Pseudomonas putida KT2440 response regulator receiver and ANTAR domain-containing protein NP_744243.1 2385299 R 160488 CDS NP_744244.1 26988819 1044946 complement(2385886..2387100) 1 NC_002947.3 similar to GB:U05040, and PID:460152; identified by sequence similarity; nitrate-binding protein NasS 2387100 1044946 PP_2094 Pseudomonas putida KT2440 nitrate-binding protein NasS NP_744244.1 2385886 R 160488 CDS NP_744245.1 26988820 1044947 2387238..2388260 1 NC_002947.3 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2388260 pyrD 1044947 pyrD Pseudomonas putida KT2440 dihydroorotate dehydrogenase 2 NP_744245.1 2387238 D 160488 CDS NP_744246.2 228994958 1044948 2389182..2391374 1 NC_002947.3 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 2391374 rlmL 1044948 rlmL Pseudomonas putida KT2440 23S rRNA m(2)G2445 methyltransferase NP_744246.2 2389182 D 160488 CDS NP_744247.1 26988822 1044949 2391469..2393871 1 NC_002947.3 identified by match to PFAM protein family HMM PF03580; PAS/PAC sensor-containing diguanylate cyclase 2393871 1044949 PP_2097 Pseudomonas putida KT2440 PAS/PAC sensor-containing diguanylate cyclase NP_744247.1 2391469 D 160488 CDS NP_744248.1 26988823 1044950 complement(2393977..2395389) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02113; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 2395389 dacB 1044950 dacB Pseudomonas putida KT2440 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase NP_744248.1 2393977 R 160488 CDS NP_744249.1 26988824 1044951 complement(2395632..2395976) 1 NC_002947.3 similar to GP:9949151, and GP:9949151; identified by sequence similarity; hypothetical protein 2395976 1044951 PP_2099 Pseudomonas putida KT2440 hypothetical protein NP_744249.1 2395632 R 160488 CDS NP_744250.1 26988825 1044952 complement(2396018..2399653) 1 NC_002947.3 similar to GB:L07555, GB:Z30426, GB:Z30430, GB:Z30427, GB:Z30429, GB:Z30428, SP:Q07108, PID:291898, PID:397939, and PID:558352; identified by sequence similarity; two-component sensor protein 2399653 1044952 PP_2100 Pseudomonas putida KT2440 two-component sensor protein NP_744250.1 2396018 R 160488 CDS NP_744251.1 26988826 1044953 complement(2399656..2400279) 1 NC_002947.3 similar to GB:M28825, GB:M22080, GB:M22163, GB:M22164, GB:M22165, GB:M22166, GB:M22167, GB:X79309, GB:X79308, GB:M27735, GB:M14663, SP:P06126, PID:180046, and PID:530884; identified by sequence similarity; LuxR family transcriptional regulator 2400279 1044953 PP_2101 Pseudomonas putida KT2440 LuxR family transcriptional regulator NP_744251.1 2399656 R 160488 CDS NP_744252.1 26988827 1044954 complement(2400554..2401885) 1 NC_002947.3 dGTPase type 3 subfamily, presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 2401885 1044954 PP_2102 Pseudomonas putida KT2440 deoxyguanosinetriphosphate triphosphohydrolase-like protein NP_744252.1 2400554 R 160488 CDS NP_744253.1 26988828 1044955 complement(2402034..2402363) 1 NC_002947.3 similar to GP:9949147, and GP:9949147; identified by sequence similarity; hypothetical protein 2402363 1044955 PP_2103 Pseudomonas putida KT2440 hypothetical protein NP_744253.1 2402034 R 160488 CDS NP_744254.1 26988829 1044956 complement(2402360..2402734) 1 NC_002947.3 hypothetical protein 2402734 1044956 PP_2104 Pseudomonas putida KT2440 hypothetical protein NP_744254.1 2402360 R 160488 CDS NP_744255.1 26988830 1044957 complement(2402744..2403058) 1 NC_002947.3 hypothetical protein 2403058 1044957 PP_2105 Pseudomonas putida KT2440 hypothetical protein NP_744255.1 2402744 R 160488 CDS NP_744256.1 26988831 1044958 2403371..2404579 1 NC_002947.3 identified by match to PFAM protein family HMM PF00909; Rh family protein/ammonium transporter 2404579 1044958 PP_2106 Pseudomonas putida KT2440 Rh family protein/ammonium transporter NP_744256.1 2403371 D 160488 CDS NP_744257.1 26988832 1044959 2404653..2404892 1 NC_002947.3 similar to GP:9949137; identified by sequence similarity; glutaredoxin 2404892 1044959 PP_2107 Pseudomonas putida KT2440 glutaredoxin NP_744257.1 2404653 D 160488 CDS NP_744258.1 26988833 1044960 2405001..2405432 1 NC_002947.3 similar to GP:7801292; identified by sequence similarity; peptidase M15A 2405432 1044960 PP_2108 Pseudomonas putida KT2440 peptidase M15A NP_744258.1 2405001 D 160488 CDS NP_744259.1 26988834 1044961 2405498..2405806 1 NC_002947.3 similar to GP:9946825; identified by sequence similarity; hypothetical protein 2405806 1044961 PP_2109 Pseudomonas putida KT2440 hypothetical protein NP_744259.1 2405498 D 160488 CDS NP_744260.1 26988835 1044963 complement(2406996..2408561) 1 NC_002947.3 similar to GP:9947522, GB:K01316, SP:P01857, SP:P01859, SP:P01860, SP:P01861, PID:184759, PID:185291, PID:2414492, PID:2414494, PID:567112, PID:577056, and PID:683576; identified by sequence similarity; aerotaxis receptor Aer-2 2408561 aer-2 1044963 aer-2 Pseudomonas putida KT2440 aerotaxis receptor Aer-2 NP_744260.1 2406996 R 160488 CDS NP_744261.1 26988836 1044964 complement(2408703..2411444) 1 NC_002947.3 catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2411444 acnA 1044964 acnA Pseudomonas putida KT2440 aconitate hydratase NP_744261.1 2408703 R 160488 CDS NP_744262.1 26988837 1044965 2411669..2412733 1 NC_002947.3 similar to GP:9947524; identified by sequence similarity; RNA 2'-O-ribose methyltransferase 2412733 1044965 PP_2113 Pseudomonas putida KT2440 RNA 2'-O-ribose methyltransferase NP_744262.1 2411669 D 160488 CDS NP_744263.1 26988838 1044966 2413154..2414455 1 NC_002947.3 identified by match to PFAM protein family HMM PF01609; ISPpu8, transposase 2414455 1044966 PP_2114 Pseudomonas putida KT2440 ISPpu8, transposase NP_744263.1 2413154 D 160488 CDS NP_744264.1 26988839 1044968 2414800..2414997 1 NC_002947.3 hypothetical protein 2414997 1044968 PP_2115 Pseudomonas putida KT2440 hypothetical protein NP_744264.1 2414800 D 160488 CDS NP_744265.1 26988840 1044969 2415019..2415261 1 NC_002947.3 TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA 2415261 1044969 PP_2116 Pseudomonas putida KT2440 sulfur transfer protein SirA NP_744265.1 2415019 D 160488 CDS NP_744266.1 26988841 1044970 2415322..2416464 1 NC_002947.3 Required for the de novo synthesis of pyroxidine via the pdxA branch; catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate; erythronate-4-phosphate dehydrogenase 2416464 pdxB 1044970 pdxB Pseudomonas putida KT2440 erythronate-4-phosphate dehydrogenase NP_744266.1 2415322 D 160488 CDS NP_744267.1 26988842 1044971 complement(2416579..2416776) 1 NC_002947.3 similar to GP:9947533; identified by sequence similarity; hypothetical protein 2416776 1044971 PP_2118 Pseudomonas putida KT2440 hypothetical protein NP_744267.1 2416579 R 160488 CDS NP_744268.1 26988843 1044972 2416963..2418726 1 NC_002947.3 identified by match to PFAM protein family HMM PF03631; lipid ABC transporter ATPase/inner membrane protein 2418726 1044972 PP_2119 Pseudomonas putida KT2440 lipid ABC transporter ATPase/inner membrane protein NP_744268.1 2416963 D 160488 CDS NP_744269.1 26988844 1044973 2418847..2420514 1 NC_002947.3 identified by match to PFAM protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer 2420514 1044973 PP_2120 Pseudomonas putida KT2440 methyl-accepting chemotaxis sensory transducer NP_744269.1 2418847 D 160488 CDS NP_744270.1 26988845 1044974 complement(2420778..2420999) 1 NC_002947.3 lipoprotein 2420999 1044974 PP_2121 Pseudomonas putida KT2440 lipoprotein NP_744270.1 2420778 R 160488 CDS NP_744271.1 26988846 1044975 2421187..2421726 1 NC_002947.3 similar to SP:P30746; identified by sequence similarity; molybdenum cofactor biosynthesis protein B 2421726 moaB-1 1044975 moaB-1 Pseudomonas putida KT2440 molybdenum cofactor biosynthesis protein B NP_744271.1 2421187 D 160488 CDS NP_744272.1 26988847 1044976 2421710..2422936 1 NC_002947.3 similar to GB:X02751, GB:L00043, GB:X53291, GB:X53292, GB:X05564, GB:X05565, GB:L00040, GB:L00041, GB:L00042, GB:M10055, GB:K03211, GB:M25898, GB:S68580, GB:X07440, GB:X61282, GB:X00645, SP:P01111, SP:P01112, PID:1335234, PID:1335235, PID:1335236, PID:1335287, PID:190927, PID:190938, PID:35092, PID:35103, PID:465130, PID:553520, PID:553633, PID:553635, PID:553638, PID:825697, and PID:929658; identified by sequence similarity; molybdopterin biosynthesis MoeA protein 2422936 moeA 1044976 moeA Pseudomonas putida KT2440 molybdopterin biosynthesis MoeA protein NP_744272.1 2421710 D 160488 CDS NP_744273.1 26988848 1044977 complement(2422925..2424172) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00534; glycosyl transferase family protein 2424172 1044977 PP_2124 Pseudomonas putida KT2440 glycosyl transferase family protein NP_744273.1 2422925 R 160488 CDS NP_744274.2 161378132 1044978 2424429..2425316 1 NC_002947.3 cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 2425316 1044978 PP_2125 Pseudomonas putida KT2440 lipid kinase NP_744274.2 2424429 D 160488 CDS NP_744275.1 26988850 1044979 complement(2425300..2425959) 1 NC_002947.3 similar to GP:4007711, GB:L22647, SP:P34995, and PID:410209; identified by sequence similarity; LuxR family transcriptional regulator 2425959 1044979 PP_2126 Pseudomonas putida KT2440 LuxR family transcriptional regulator NP_744275.1 2425300 R 160488 CDS NP_744276.1 26988851 1044980 complement(2425949..2426890) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02518; sensor histidine kinase 2426890 1044980 PP_2127 Pseudomonas putida KT2440 sensor histidine kinase NP_744276.1 2425949 R 160488 CDS NP_744277.1 26988852 1044981 2428073..2429008 1 NC_002947.3 identified by match to PFAM protein family HMM PF00072; chemotaxis protein CheV 2429008 chev-2 1044981 chev-2 Pseudomonas putida KT2440 chemotaxis protein CheV NP_744277.1 2428073 D 160488 CDS NP_744278.1 26988853 1044982 2429064..2429867 1 NC_002947.3 identified by match to PFAM protein family HMM PF03473; MOSC domain-containing protein 2429867 1044982 PP_2129 Pseudomonas putida KT2440 MOSC domain-containing protein NP_744278.1 2429064 D 160488 CDS NP_744279.1 26988854 1044983 complement(2429980..2431953) 1 NC_002947.3 similar to SP:P03810; identified by sequence similarity; lytic transglycosylase 2431953 1044983 PP_2130 Pseudomonas putida KT2440 lytic transglycosylase NP_744279.1 2429980 R 160488 CDS NP_744280.1 26988855 1044984 2432126..2434054 1 NC_002947.3 similar to GB:L02321, SP:P46439, and PID:468260; identified by sequence similarity; ABC transporter ATP-binding protein 2434054 1044984 PP_2131 Pseudomonas putida KT2440 ABC transporter ATP-binding protein NP_744280.1 2432126 D 160488 CDS NP_744281.1 26988856 1044985 complement(2434162..2434602) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00582; universal stress protein 2434602 1044985 PP_2132 Pseudomonas putida KT2440 universal stress protein NP_744281.1 2434162 R 160488 CDS NP_744282.1 26988857 1044986 2434686..2435150 1 NC_002947.3 hypothetical protein 2435150 1044986 PP_2133 Pseudomonas putida KT2440 hypothetical protein NP_744282.1 2434686 D 160488 CDS NP_744283.1 26988858 1044987 2435454..2436419 1 NC_002947.3 similar to GP:7741879; identified by sequence similarity; ISPpu10, transposase 2436419 1044987 PP_2134 Pseudomonas putida KT2440 ISPpu10, transposase NP_744283.1 2435454 D 160488 CDS NP_744284.1 26988859 1044988 complement(2436589..2436705) 1 NC_002947.3 hypothetical protein 2436705 1044988 PP_2135 Pseudomonas putida KT2440 hypothetical protein NP_744284.1 2436589 R 160488 CDS NP_744285.1 26988860 1044991 2437078..2439225 1 NC_002947.3 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 2439225 fadB 1044991 fadB Pseudomonas putida KT2440 multifunctional fatty acid oxidation complex subunit alpha NP_744285.1 2437078 D 160488 CDS NP_744286.1 26988861 1044992 2439257..2440432 1 NC_002947.3 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 2440432 fadA 1044992 fadA Pseudomonas putida KT2440 3-ketoacyl-CoA thiolase NP_744286.1 2439257 D 160488 CDS NP_744287.1 26988862 1044993 2440508..2440759 1 NC_002947.3 similar to GP:9949114; identified by sequence similarity; hypothetical protein 2440759 1044993 PP_2138 Pseudomonas putida KT2440 hypothetical protein NP_744287.1 2440508 D 160488 CDS NP_744288.1 26988863 1044994 2440860..2443469 1 NC_002947.3 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 2443469 topA 1044994 topA Pseudomonas putida KT2440 DNA topoisomerase I NP_744288.1 2440860 D 160488 CDS NP_744289.1 26988864 1044995 2443482..2444075 1 NC_002947.3 hypothetical protein 2444075 1044995 PP_2140 Pseudomonas putida KT2440 hypothetical protein NP_744289.1 2443482 D 160488 CDS NP_744290.1 26988865 1044996 2444126..2444359 1 NC_002947.3 hypothetical protein 2444359 1044996 PP_2141 Pseudomonas putida KT2440 hypothetical protein NP_744290.1 2444126 D 160488 CDS NP_744291.1 26988866 1044997 complement(2444410..2444886) 1 NC_002947.3 similar to GB:S45627, GB:S45629, GB:S45636, GB:S45637, GB:S45639, GB:S45640, GB:S45635, GB:M16594, GB:X65726, GB:X65727, GB:X65728, GB:X65729, GB:X65730, GB:X65731, GB:X65732, SP:P08263, SP:P09210, PID:306811, PID:825605, and PID:825606; identified by sequence similarity; cell division inhibitor-like protein 2444886 1044997 PP_2142 Pseudomonas putida KT2440 cell division inhibitor-like protein NP_744291.1 2444410 R 160488 CDS NP_744292.1 26988867 1044998 complement(2444900..2445508) 1 NC_002947.3 Represses a number of genes involved in the response to DNA damage; LexA repressor 2445508 lexA-1 1044998 lexA-1 Pseudomonas putida KT2440 LexA repressor NP_744292.1 2444900 R 160488 CDS NP_744293.1 26988868 1044999 2445724..2446431 1 NC_002947.3 identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 2446431 1044999 PP_2144 Pseudomonas putida KT2440 TetR family transcriptional regulator NP_744293.1 2445724 D 160488 CDS NP_744294.1 26988869 1045000 2446609..2447619 1 NC_002947.3 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 2447619 nagZ 1045000 nagZ Pseudomonas putida KT2440 beta-hexosaminidase NP_744294.1 2446609 D 160488 CDS NP_744295.1 26988870 1045001 complement(2447762..2449762) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00271; Snf2/Rad54 family helicase 2449762 1045001 PP_2146 Pseudomonas putida KT2440 Snf2/Rad54 family helicase NP_744295.1 2447762 R 160488 CDS NP_744296.1 26988871 1045002 complement(2451084..2451656) 1 NC_002947.3 hypothetical protein 2451656 1045002 PP_2147 Pseudomonas putida KT2440 hypothetical protein NP_744296.1 2451084 R 160488 CDS NP_744297.1 26988872 1045003 complement(2451666..2455115) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00643; transcription-repair coupling factor 2455115 mfd 1045003 mfd Pseudomonas putida KT2440 transcription-repair coupling factor NP_744297.1 2451666 R 160488 CDS NP_744298.1 26988873 1045004 2455283..2456746 1 NC_002947.3 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 2456746 gap-2 1045004 gap-2 Pseudomonas putida KT2440 glyceraldehyde-3-phosphate dehydrogenase NP_744298.1 2455283 D 160488 CDS NP_744299.1 26988874 1045006 2456927..2457925 1 NC_002947.3 similar to SP:P41780; identified by sequence similarity; ApbE family lipoprotein 2457925 1045006 PP_2150 Pseudomonas putida KT2440 ApbE family lipoprotein NP_744299.1 2456927 D 160488 CDS NP_744300.1 26988875 1045007 2458130..2459524 1 NC_002947.3 catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 2459524 sthA 1045007 sthA Pseudomonas putida KT2440 soluble pyridine nucleotide transhydrogenase NP_744300.1 2458130 D 160488 CDS NP_744301.1 26988876 1045008 complement(2459573..2460289) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase 2460289 1045008 PP_2152 Pseudomonas putida KT2440 glycerophosphoryl diester phosphodiesterase NP_744301.1 2459573 R 160488 CDS NP_744302.1 26988877 1045010 complement(2460321..2460905) 1 NC_002947.3 similar to GP:9949089, and GP:9949089; identified by sequence similarity; type IV pilus assembly PilZ 2460905 1045010 PP_2153 Pseudomonas putida KT2440 type IV pilus assembly PilZ NP_744302.1 2460321 R 160488 CDS NP_744303.1 26988878 1045011 2460999..2462249 1 NC_002947.3 similar to SP:P31733, and PID:38828; identified by sequence similarity; lipoprotein releasing system transmembrane protein LolC/E family 2462249 lolC 1045011 lolC Pseudomonas putida KT2440 lipoprotein releasing system transmembrane protein LolC/E family NP_744303.1 2460999 D 160488 CDS NP_744304.1 26988879 1045012 2462242..2462940 1 NC_002947.3 similar to SP:P75957; identified by sequence similarity; lipoprotein releasing system, ATP-binding protein 2462940 lolD 1045012 lolD Pseudomonas putida KT2440 lipoprotein releasing system, ATP-binding protein NP_744304.1 2462242 D 160488 CDS NP_744305.1 26988880 1045014 2463001..2464242 1 NC_002947.3 similar to SP:P31733, and PID:38828; identified by sequence similarity; lipoprotein releasing system transmembrane protein LolC/E family 2464242 lolE 1045014 lolE Pseudomonas putida KT2440 lipoprotein releasing system transmembrane protein LolC/E family NP_744305.1 2463001 D 160488 CDS NP_744306.1 26988881 1045015 complement(2464282..2465634) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01386; heavy metal sensor signal transduction histidine kinase 2465634 1045015 PP_2157 Pseudomonas putida KT2440 heavy metal sensor signal transduction histidine kinase NP_744306.1 2464282 R 160488 CDS NP_744307.1 26988882 1045016 complement(2465631..2466311) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01387; two component heavy metal response transcriptional regulator 2466311 1045016 PP_2158 Pseudomonas putida KT2440 two component heavy metal response transcriptional regulator NP_744307.1 2465631 R 160488 CDS NP_744308.1 26988883 1045017 2466512..2467039 1 NC_002947.3 identified by match to PFAM protein family HMM PF00127; plastocyanin/azurin family copper binding protein 2467039 1045017 PP_2159 Pseudomonas putida KT2440 plastocyanin/azurin family copper binding protein NP_744308.1 2466512 D 160488 CDS NP_744309.1 26988884 1045018 2467108..2467938 1 NC_002947.3 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 2467938 queF 1045018 queF Pseudomonas putida KT2440 7-cyano-7-deazaguanine reductase NP_744309.1 2467108 D 160488 CDS NP_744310.1 26988885 1045020 complement(2467970..2468233) 1 NC_002947.3 similar to GP:9948888; identified by sequence similarity; hypothetical protein 2468233 1045020 PP_2161 Pseudomonas putida KT2440 hypothetical protein NP_744310.1 2467970 R 160488 CDS NP_744311.1 26988886 1045021 complement(2468356..2468919) 1 NC_002947.3 similar to GP:9948886; identified by sequence similarity; hypothetical protein 2468919 1045021 PP_2162 Pseudomonas putida KT2440 hypothetical protein NP_744311.1 2468356 R 160488 CDS NP_744312.1 26988887 1045022 2469121..2469828 1 NC_002947.3 VacJ family lipoprotein 2469828 vacJ 1045022 vacJ Pseudomonas putida KT2440 VacJ family lipoprotein NP_744312.1 2469121 D 160488 CDS NP_744313.1 26988888 1045023 complement(2469863..2470162) 1 NC_002947.3 similar to GP:9948882; identified by sequence similarity; type IV pilus assembly PilZ 2470162 1045023 PP_2164 Pseudomonas putida KT2440 type IV pilus assembly PilZ NP_744313.1 2469863 R 160488 CDS NP_744314.1 26988889 1045024 2470433..2471614 1 NC_002947.3 identified by match to PFAM protein family HMM PF00072; response regulator 2471614 1045024 PP_2165 Pseudomonas putida KT2440 response regulator NP_744314.1 2470433 D 160488 CDS NP_744315.1 26988890 1045025 2471611..2472093 1 NC_002947.3 identified by match to PFAM protein family HMM PF01740; anti-sigma-factor antagonist 2472093 1045025 PP_2166 Pseudomonas putida KT2440 anti-sigma-factor antagonist NP_744315.1 2471611 D 160488 CDS NP_744316.1 26988891 1045027 complement(2472242..2474092) 1 NC_002947.3 hypothetical protein 2474092 1045027 PP_2167 Pseudomonas putida KT2440 hypothetical protein NP_744316.1 2472242 R 160488 CDS NP_744317.1 26988892 1045028 complement(2474272..2475198) 1 NC_002947.3 Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B 2475198 tal 1045028 tal Pseudomonas putida KT2440 transaldolase B NP_744317.1 2474272 R 160488 CDS NP_744318.1 26988893 1045029 complement(2475355..2476365) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01207; tRNA-dihydrouridine synthase A 2476365 1045029 PP_2169 Pseudomonas putida KT2440 tRNA-dihydrouridine synthase A NP_744318.1 2475355 R 160488 CDS NP_744319.1 26988894 1045030 2476463..2477161 1 NC_002947.3 identified by match to PFAM protein family HMM PF01817; chorismate mutase 2477161 1045030 PP_2170 Pseudomonas putida KT2440 chorismate mutase NP_744319.1 2476463 D 160488 CDS NP_744320.1 26988895 1045031 complement(2477207..2477833) 1 NC_002947.3 similar to GP:10176119; identified by sequence similarity; amino acid transporter LysE 2477833 1045031 PP_2171 Pseudomonas putida KT2440 amino acid transporter LysE NP_744320.1 2477207 R 160488 CDS NP_744321.1 26988896 1045032 2478301..2478744 1 NC_002947.3 hypothetical protein 2478744 1045032 PP_2172 Pseudomonas putida KT2440 hypothetical protein NP_744321.1 2478301 D 160488 CDS NP_744322.1 26988897 1045033 complement(2479189..2480058) 1 NC_002947.3 similar to GB:J00230, SP:P01857, SP:P01859, SP:P01860, SP:P01861, PID:1335110, PID:1335112, PID:1335113, PID:184758, PID:567112, and PID:577056; identified by sequence similarity; AraC family transcriptional regulator 2480058 1045033 PP_2173 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_744322.1 2479189 R 160488 CDS NP_744323.1 26988898 1045034 complement(2480165..2480557) 1 NC_002947.3 similar to GP:9950386, and GP:9950386; identified by sequence similarity; hypothetical protein 2480557 1045034 PP_2174 Pseudomonas putida KT2440 hypothetical protein NP_744323.1 2480165 R 160488 CDS NP_744324.1 26988899 1045035 complement(2480639..2481343) 1 NC_002947.3 similar to GB:L22081, SP:P37032, and PID:348945; identified by sequence similarity; short-chain dehydrogenase/reductase SDR 2481343 1045035 PP_2175 Pseudomonas putida KT2440 short-chain dehydrogenase/reductase SDR NP_744324.1 2480639 R 160488 CDS NP_744325.1 26988900 1045036 complement(2481443..2482429) 1 NC_002947.3 similar to GB:L17326, and PID:306325; identified by sequence similarity; LysR family transcriptional regulator 2482429 1045036 PP_2176 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744325.1 2481443 R 160488 CDS NP_744326.1 26988901 1045037 2482550..2483104 1 NC_002947.3 identified by match to PFAM protein family HMM PF01381; transcriptional regulator 2483104 1045037 PP_2177 Pseudomonas putida KT2440 transcriptional regulator NP_744326.1 2482550 D 160488 CDS NP_744327.1 26988902 1045038 2483132..2484478 1 NC_002947.3 similar to SP:P28787, GB:X68129, and PID:45902; identified by sequence similarity; glutamine synthetase 2484478 1045038 PP_2178 Pseudomonas putida KT2440 glutamine synthetase NP_744327.1 2483132 D 160488 CDS NP_744328.1 26988903 1045039 2484563..2485336 1 NC_002947.3 similar to SP:P76038; identified by sequence similarity; peptidase C26 2485336 1045039 PP_2179 Pseudomonas putida KT2440 peptidase C26 NP_744328.1 2484563 D 160488 CDS NP_744329.1 26988904 1045040 2485406..2486764 1 NC_002947.3 similar to GP:13194611; identified by sequence similarity; aminotransferase 2486764 1045040 PP_2180 Pseudomonas putida KT2440 aminotransferase NP_744329.1 2485406 D 160488 CDS NP_744330.1 26988905 1045041 2486948..2487502 1 NC_002947.3 identified by match to PFAM protein family HMM PF01381; Cro/CI family transcriptional regulator 2487502 1045041 PP_2181 Pseudomonas putida KT2440 Cro/CI family transcriptional regulator NP_744330.1 2486948 D 160488 CDS NP_744331.1 26988906 1045043 2487626..2488141 1 NC_002947.3 similar to GP:9948644; identified by sequence similarity; ProQ activator of osmoprotectant transporter ProP 2488141 1045043 PP_2182 Pseudomonas putida KT2440 ProQ activator of osmoprotectant transporter ProP NP_744331.1 2487626 D 160488 CDS NP_744332.1 26988907 1045044 2488543..2489025 1 NC_002947.3 catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor; formate dehydrogenase subunit gamma 2489025 1045044 PP_2183 Pseudomonas putida KT2440 formate dehydrogenase subunit gamma NP_744332.1 2488543 D 160488 CDS NP_744333.1 26988908 1045045 2489001..2490578 1 NC_002947.3 similar to GP:3724144, and GP:3724144; identified by sequence similarity; NADH dehydrogenase (quinone) 2490578 1045045 PP_2184 Pseudomonas putida KT2440 NADH dehydrogenase (quinone) NP_744333.1 2489001 D 160488 CDS NP_744334.1 26988909 1045046 2490575..2493457 1 NC_002947.3 similar to GP:17743211; identified by sequence similarity; formate dehydrogenase subunit alpha 2493457 1045046 PP_2185 Pseudomonas putida KT2440 formate dehydrogenase subunit alpha NP_744334.1 2490575 D 160488 CDS NP_744335.1 26988910 1045047 2493454..2493657 1 NC_002947.3 similar to GP:3724147, and GP:3724147; identified by sequence similarity; formate dehydrogenase subunit delta 2493657 1045047 PP_2186 Pseudomonas putida KT2440 formate dehydrogenase subunit delta NP_744335.1 2493454 D 160488 CDS NP_744336.1 26988911 1045048 complement(2493771..2494634) 1 NC_002947.3 similar to SP:P03807; identified by sequence similarity; universal stress protein 2494634 1045048 PP_2187 Pseudomonas putida KT2440 universal stress protein NP_744336.1 2493771 R 160488 CDS NP_744337.1 26988912 1045049 2494789..2495406 1 NC_002947.3 similar to GB:M22404, PID:188866, GB:M22404, and PID:188866; identified by sequence similarity; tRNA--hydroxylase 2495406 1045049 PP_2188 Pseudomonas putida KT2440 tRNA--hydroxylase NP_744337.1 2494789 D 160488 CDS NP_744338.1 26988913 1045050 complement(2495429..2495854) 1 NC_002947.3 similar to GP:9947261; identified by sequence similarity; hypothetical protein 2495854 1045050 PP_2189 Pseudomonas putida KT2440 hypothetical protein NP_744338.1 2495429 R 160488 CDS NP_744339.1 26988914 1045051 2495877..2496140 1 NC_002947.3 similar to GP:9947967, and GP:9947967; identified by sequence similarity; hypothetical protein 2496140 1045051 PP_2190 Pseudomonas putida KT2440 hypothetical protein NP_744339.1 2495877 D 160488 CDS NP_744340.1 26988915 1045052 complement(2496161..2496640) 1 NC_002947.3 lipoprotein 2496640 1045052 PP_2191 Pseudomonas putida KT2440 lipoprotein NP_744340.1 2496161 R 160488 CDS NP_744341.1 26988916 1045054 2496772..2497896 1 NC_002947.3 ECF subfamily RNA polymerase sigma factor 2497896 1045054 PP_2192 Pseudomonas putida KT2440 ECF subfamily RNA polymerase sigma factor NP_744341.1 2496772 D 160488 CDS NP_744342.1 26988917 1045055 2498097..2500550 1 NC_002947.3 similar to GB:K00558, GB:S62639, SP:P04687, SP:P05215, PID:340019, PID:340021, and PID:37492; identified by sequence similarity; TonB-dependent siderophore receptor 2500550 1045055 PP_2193 Pseudomonas putida KT2440 TonB-dependent siderophore receptor NP_744342.1 2498097 D 160488 CDS NP_744343.1 26988918 1045058 complement(2500575..2501465) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 2501465 1045058 PP_2194 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744343.1 2500575 R 160488 CDS NP_744344.1 26988919 1045057 2501559..2502647 1 NC_002947.3 identified by match to PFAM protein family HMM PF01547; polyamine ABC transporter substrate-binding protein 2502647 1045057 PP_2195 Pseudomonas putida KT2440 polyamine ABC transporter substrate-binding protein NP_744344.1 2501559 D 160488 CDS NP_744345.2 228994957 1045059 2502673..2503638 1 NC_002947.3 catalyzes the formation of putrescine from agmatine; agmatinase 2503638 speB 1045059 speB Pseudomonas putida KT2440 agmatinase NP_744345.2 2502673 D 160488 CDS NP_744346.1 26988921 1045060 2503871..2504188 1 NC_002947.3 hypothetical protein 2504188 1045060 PP_2197 Pseudomonas putida KT2440 hypothetical protein NP_744346.1 2503871 D 160488 CDS NP_744347.1 26988922 1045061 2504211..2505356 1 NC_002947.3 glucose sorbosone dehydrogenase 2505356 1045061 PP_2198 Pseudomonas putida KT2440 glucose sorbosone dehydrogenase NP_744347.1 2504211 D 160488 CDS NP_744348.1 26988923 1045062 2505398..2506504 1 NC_002947.3 identified by match to PFAM protein family HMM PF03969; AFG1 family ATPase 2506504 1045062 PP_2199 Pseudomonas putida KT2440 AFG1 family ATPase NP_744348.1 2505398 D 160488 CDS NP_744349.1 26988924 1045063 2506518..2507099 1 NC_002947.3 similar to GB:M24428, GB:M24429, GB:M24430, GB:M24431, GB:M24432, GB:M24433, GB:M24434, GB:M24435, GB:M24436, GB:M24437, GB:M24438, GB:M24439, GB:X14174, GB:S76738, SP:P05186, PID:178462, PID:28738, GB:M24428, GB:M24429, GB:M24430, GB:M24431, GB:M24432, GB:M24433, GB:M24434, GB:M24435, GB:M24436, GB:M24437, GB:M24438, GB:M24439, GB:X14174, GB:S76738, SP:P05186, PID:178462, and PID:28738; identified by sequence similarity; hypothetical protein 2507099 1045063 PP_2200 Pseudomonas putida KT2440 hypothetical protein NP_744349.1 2506518 D 160488 CDS NP_744350.1 26988925 1045064 complement(2507172..2508170) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01738; alpha/beta hydrolase 2508170 1045064 PP_2201 Pseudomonas putida KT2440 alpha/beta hydrolase NP_744350.1 2507172 R 160488 CDS NP_744351.1 26988926 1045065 complement(2508246..2508683) 1 NC_002947.3 similar to GP:9948831; identified by sequence similarity; hypothetical protein 2508683 1045065 PP_2202 Pseudomonas putida KT2440 hypothetical protein NP_744351.1 2508246 R 160488 CDS NP_744352.1 26988927 1045066 complement(2508683..2509111) 1 NC_002947.3 similar to GP:9950973, and GP:9950973; identified by sequence similarity; hypothetical protein 2509111 1045066 PP_2203 Pseudomonas putida KT2440 hypothetical protein NP_744352.1 2508683 R 160488 CDS NP_744353.1 26988928 1045067 complement(2509126..2510010) 1 NC_002947.3 copper resistance protein B 2510010 1045067 PP_2204 Pseudomonas putida KT2440 copper resistance protein B NP_744353.1 2509126 R 160488 CDS NP_744354.1 26988929 1045068 complement(2510003..2511727) 1 NC_002947.3 similar to GB:X12901, GB:A07400, GB:X04657, GB:A14103, SP:P09327, PID:1247443, PID:37843, PID:37845, PID:412172, and PID:579563; identified by sequence similarity; CopA family copper resistance protein 2511727 1045068 PP_2205 Pseudomonas putida KT2440 CopA family copper resistance protein NP_744354.1 2510003 R 160488 CDS NP_744355.1 26988930 1045069 complement(2511806..2513086) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01136; U32 family peptidase 2513086 1045069 PP_2206 Pseudomonas putida KT2440 U32 family peptidase NP_744355.1 2511806 R 160488 CDS NP_744356.1 26988931 1045070 2513273..2514337 1 NC_002947.3 identified by match to PFAM protein family HMM PF01594; hypothetical protein 2514337 1045070 PP_2207 Pseudomonas putida KT2440 hypothetical protein NP_744356.1 2513273 D 160488 CDS NP_744357.1 26988932 1045071 complement(2514556..2515383) 1 NC_002947.3 catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 2515383 phnX 1045071 phnX Pseudomonas putida KT2440 phosphonoacetaldehyde hydrolase NP_744357.1 2514556 R 160488 CDS NP_744358.1 26988933 1045072 complement(2515418..2516524) 1 NC_002947.3 catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase 2516524 phnW 1045072 phnW Pseudomonas putida KT2440 2-aminoethylphosphonate--pyruvate transaminase NP_744358.1 2515418 R 160488 CDS NP_744359.1 26988934 1045073 2516637..2517500 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 2517500 1045073 PP_2210 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744359.1 2516637 D 160488 CDS NP_744360.1 26988935 1045074 2517578..2518600 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 2518600 1045074 PP_2211 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_744360.1 2517578 D 160488 CDS NP_744361.1 26988936 1045075 2518747..2523192 1 NC_002947.3 identified by match to PFAM protein family HMM PF00560; hypothetical protein 2523192 1045075 PP_2212 Pseudomonas putida KT2440 hypothetical protein NP_744361.1 2518747 D 160488 CDS NP_744362.1 26988937 1045076 2523276..2524961 1 NC_002947.3 similar to GP:13310126; identified by sequence similarity; AMP-dependent synthetase/ligase 2524961 fadDx 1045076 fadDx Pseudomonas putida KT2440 AMP-dependent synthetase/ligase NP_744362.1 2523276 D 160488 CDS NP_744363.1 26988938 1045077 2524975..2525742 1 NC_002947.3 similar to GP:9948613, and GP:13310127; identified by sequence similarity; short-chain dehydrogenase/reductase SDR 2525742 fadB2x 1045077 fadB2x Pseudomonas putida KT2440 short-chain dehydrogenase/reductase SDR NP_744363.1 2524975 D 160488 CDS NP_744364.1 26988939 1045080 2525754..2526947 1 NC_002947.3 similar to GP:13310128; identified by sequence similarity; acetyl-CoA acetyltransferase 2526947 fadAx 1045080 fadAx Pseudomonas putida KT2440 acetyl-CoA acetyltransferase NP_744364.1 2525754 D 160488 CDS NP_744365.1 26988940 1045081 2526956..2528083 1 NC_002947.3 identified by match to PFAM protein family HMM PF02770; acyl-CoA dehydrogenase 2528083 1045081 PP_2216 Pseudomonas putida KT2440 acyl-CoA dehydrogenase NP_744365.1 2526956 D 160488 CDS NP_744366.1 26988941 1045082 2528097..2528870 1 NC_002947.3 similar to SP:Q52995, and GP:13310130; identified by sequence similarity; enoyl-CoA hydratase 2528870 fadB1x 1045082 fadB1x Pseudomonas putida KT2440 enoyl-CoA hydratase NP_744366.1 2528097 D 160488 CDS NP_744367.1 26988942 1045083 2529277..2530578 1 NC_002947.3 identified by match to PFAM protein family HMM PF01609; ISPpu8, transposase 2530578 1045083 PP_2218 Pseudomonas putida KT2440 ISPpu8, transposase NP_744367.1 2529277 D 160488 CDS NP_744368.1 26988943 1045084 2530759..2531127 1 NC_002947.3 hypothetical protein 2531127 1045084 PP_2219 Pseudomonas putida KT2440 hypothetical protein NP_744368.1 2530759 D 160488 CDS NP_744369.1 26988944 1045085 2531163..2531567 1 NC_002947.3 identified by match to PFAM protein family HMM PF01258; C4-type zinc finger DksA/TraR family protein 2531567 1045085 PP_2220 Pseudomonas putida KT2440 C4-type zinc finger DksA/TraR family protein NP_744369.1 2531163 D 160488 CDS NP_744370.1 26988945 1045086 2531576..2531746 1 NC_002947.3 hypothetical protein 2531746 1045086 PP_2221 Pseudomonas putida KT2440 hypothetical protein NP_744370.1 2531576 D 160488 CDS NP_744371.1 26988946 1045087 2531743..2531940 1 NC_002947.3 hypothetical protein 2531940 1045087 PP_2222 Pseudomonas putida KT2440 hypothetical protein NP_744371.1 2531743 D 160488 CDS NP_744372.1 26988947 1045088 2532226..2532756 1 NC_002947.3 hypothetical protein 2532756 1045088 PP_2223 Pseudomonas putida KT2440 hypothetical protein NP_744372.1 2532226 D 160488 CDS NP_744373.1 26988948 1045090 2532753..2532965 1 NC_002947.3 similar to GP:9947967, and GP:9947967; identified by sequence similarity; hypothetical protein 2532965 1045090 PP_2224 Pseudomonas putida KT2440 hypothetical protein NP_744373.1 2532753 D 160488 CDS NP_744374.1 26988949 1045091 complement(2532978..2533343) 1 NC_002947.3 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit G 2533343 1045091 PP_2225 Pseudomonas putida KT2440 monovalent cation/H+ antiporter subunit G NP_744374.1 2532978 R 160488 CDS NP_744375.1 26988950 1045093 complement(2533340..2533618) 1 NC_002947.3 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit F 2533618 1045093 PP_2226 Pseudomonas putida KT2440 monovalent cation/H+ antiporter subunit F NP_744375.1 2533340 R 160488 CDS NP_744376.1 26988951 1045094 complement(2533615..2534103) 1 NC_002947.3 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit E 2534103 1045094 PP_2227 Pseudomonas putida KT2440 monovalent cation/H+ antiporter subunit E NP_744376.1 2533615 R 160488 CDS NP_744377.1 26988952 1045095 complement(2534100..2535779) 1 NC_002947.3 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; monovalent cation/H+ antiporter subunit D 2535779 1045095 PP_2228 Pseudomonas putida KT2440 monovalent cation/H+ antiporter subunit D NP_744377.1 2534100 R 160488 CDS NP_744378.1 26988953 1045096 complement(2535776..2536120) 1 NC_002947.3 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit C 2536120 1045096 PP_2229 Pseudomonas putida KT2440 monovalent cation/H+ antiporter subunit C NP_744378.1 2535776 R 160488 CDS NP_744379.1 26988954 1045097 complement(2536120..2539035) 1 NC_002947.3 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; monovalent cation/H+ antiporter subunit A 2539035 1045097 PP_2230 Pseudomonas putida KT2440 monovalent cation/H+ antiporter subunit A NP_744379.1 2536120 R 160488 CDS NP_744380.1 26988955 1045104 complement(2539186..2540262) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00892; hypothetical protein 2540262 1045104 PP_2231 Pseudomonas putida KT2440 hypothetical protein NP_744380.1 2539186 R 160488 CDS NP_744381.1 26988956 1045105 2540251..2540784 1 NC_002947.3 similar to GP:9947301; identified by sequence similarity; Cro/CI family transcriptional regulator 2540784 1045105 PP_2232 Pseudomonas putida KT2440 Cro/CI family transcriptional regulator NP_744381.1 2540251 D 160488 CDS NP_744382.1 26988957 1045106 complement(2540833..2541381) 1 NC_002947.3 similar to SP:P00778; identified by sequence similarity; isochorismatase superfamily hydrolase 2541381 1045106 PP_2233 Pseudomonas putida KT2440 isochorismatase superfamily hydrolase NP_744382.1 2540833 R 160488 CDS NP_744383.1 26988958 1045107 2541464..2542456 1 NC_002947.3 similar to GP:10178384; identified by sequence similarity; AraC family transcriptional regulator 2542456 1045107 PP_2234 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_744383.1 2541464 D 160488 CDS NP_744384.1 26988959 1045108 2542538..2542918 1 NC_002947.3 identified by match to PFAM protein family HMM PF03992; hypothetical protein 2542918 1045108 PP_2235 Pseudomonas putida KT2440 hypothetical protein NP_744384.1 2542538 D 160488 CDS NP_744385.1 26988960 1045111 complement(2542897..2543709) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00326; prolyl oligopeptidase 2543709 1045111 PP_2236 Pseudomonas putida KT2440 prolyl oligopeptidase NP_744385.1 2542897 R 160488 CDS NP_744386.1 26988961 1045113 complement(2543651..2544769) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01366; hypothetical protein 2544769 1045113 PP_2237 Pseudomonas putida KT2440 hypothetical protein NP_744386.1 2543651 R 160488 CDS NP_744387.1 26988962 1045114 2544897..2546798 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00500; peptidase M24 2546798 1045114 PP_2238 Pseudomonas putida KT2440 peptidase M24 NP_744387.1 2544897 D 160488 CDS NP_744388.1 26988963 1045115 complement(2547311..2548198) 1 NC_002947.3 similar to GB:L07597, and PID:292457; identified by sequence similarity; cysteine transporter 2548198 1045115 PP_2239 Pseudomonas putida KT2440 cysteine transporter NP_744388.1 2547311 R 160488 CDS NP_744389.1 26988964 1045121 2554017..2555897 1 NC_002947.3 similar to GB:Z25430, and PID:405739; identified by sequence similarity; ABC transporter 2555897 1045121 PP_2240 Pseudomonas putida KT2440 ABC transporter NP_744389.1 2554017 D 160488 CDS NP_744390.1 26988965 1045123 complement(2556108..2557364) 1 NC_002947.3 similar to GP:3758825; identified by sequence similarity; major facilitator family transporter 2557364 1045123 PP_2241 Pseudomonas putida KT2440 major facilitator family transporter NP_744390.1 2556108 R 160488 CDS NP_744391.1 26988966 1045124 2557738..2559972 1 NC_002947.3 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA 2559972 fepA 1045124 fepA Pseudomonas putida KT2440 outer membrane receptor FepA NP_744391.1 2557738 D 160488 CDS NP_744392.1 26988967 1045127 2560036..2560638 1 NC_002947.3 similar to GP:3581840, and GP:3581840; identified by sequence similarity; phosphoglycerate mutase 2560638 1045127 PP_2243 Pseudomonas putida KT2440 phosphoglycerate mutase NP_744392.1 2560036 D 160488 CDS NP_744393.1 26988968 1045128 complement(2560642..2561427) 1 NC_002947.3 similar to SP:P35852, PID:308866, SP:P35852, and PID:308866; identified by sequence similarity; hypothetical protein 2561427 1045128 PP_2244 Pseudomonas putida KT2440 hypothetical protein NP_744393.1 2560642 R 160488 CDS NP_744394.1 26988969 1045129 complement(2561552..2562145) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01381; Cro/CI family transcriptional regulator 2562145 1045129 PP_2245 Pseudomonas putida KT2440 Cro/CI family transcriptional regulator NP_744394.1 2561552 R 160488 CDS NP_744395.1 26988970 1045130 2562260..2563396 1 NC_002947.3 similar to GP:9950041; identified by sequence similarity; FAD dependent oxidoreductase 2563396 1045130 PP_2246 Pseudomonas putida KT2440 FAD dependent oxidoreductase NP_744395.1 2562260 D 160488 CDS NP_744396.1 26988971 1045135 2563409..2563786 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00004; endoribonuclease L-PSP 2563786 1045135 PP_2247 Pseudomonas putida KT2440 endoribonuclease L-PSP NP_744396.1 2563409 D 160488 CDS NP_744397.1 26988972 1045138 2563899..2564963 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00814; hypothetical protein 2564963 1045138 PP_2248 Pseudomonas putida KT2440 hypothetical protein NP_744397.1 2563899 D 160488 CDS NP_744398.1 26988973 1045136 complement(2565017..2566948) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02743; methyl-accepting chemotaxis transducer 2566948 1045136 PP_2249 Pseudomonas putida KT2440 methyl-accepting chemotaxis transducer NP_744398.1 2565017 R 160488 CDS NP_744399.1 26988974 1045140 complement(2567046..2567924) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 2567924 1045140 PP_2250 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744399.1 2567046 R 160488 CDS NP_744400.1 26988975 1045141 2568027..2568455 1 NC_002947.3 similar to GP:9948836; identified by sequence similarity; transmembrane pair domain-containing protein 2568455 1045141 PP_2251 Pseudomonas putida KT2440 transmembrane pair domain-containing protein NP_744400.1 2568027 D 160488 CDS NP_744401.1 26988976 1045142 complement(2568495..2569544) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00463; hypothetical protein 2569544 1045142 PP_2252 Pseudomonas putida KT2440 hypothetical protein NP_744401.1 2568495 R 160488 CDS NP_744402.1 26988977 1045145 complement(2569696..2570364) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00392; GntR family transcriptional regulator 2570364 1045145 PP_2253 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_744402.1 2569696 R 160488 CDS NP_744403.1 26988978 1045146 complement(2570381..2571079) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01199; GntR family transcriptional regulator 2571079 1045146 PP_2254 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_744403.1 2570381 R 160488 CDS NP_744404.1 26988979 1045147 complement(2571123..2572433) 1 NC_002947.3 involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 2572433 1045147 PP_2255 Pseudomonas putida KT2440 C4-dicarboxylate transporter DctA NP_744404.1 2571123 R 160488 CDS NP_744405.1 26988980 1045148 complement(2572661..2572975) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01381; Cro/CI family transcriptional regulator 2572975 1045148 PP_2256 Pseudomonas putida KT2440 Cro/CI family transcriptional regulator NP_744405.1 2572661 R 160488 CDS NP_744406.1 26988981 1045149 2573242..2574807 1 NC_002947.3 similar to GP:4545127, and GP:4545127; identified by sequence similarity; aerotaxis receptor Aer-1 2574807 aer-1 1045149 aer-1 Pseudomonas putida KT2440 aerotaxis receptor Aer-1 NP_744406.1 2573242 D 160488 CDS NP_744407.1 26988982 1045151 2574821..2576509 1 NC_002947.3 similar to GP:4545126; identified by sequence similarity; sensory box protein 2576509 1045151 PP_2258 Pseudomonas putida KT2440 sensory box protein NP_744407.1 2574821 D 160488 CDS NP_744408.1 26988983 1045152 complement(2576616..2578391) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02954; Fis family transcriptional regulator 2578391 1045152 PP_2259 Pseudomonas putida KT2440 Fis family transcriptional regulator NP_744408.1 2576616 R 160488 CDS NP_744409.1 26988984 1045153 2578588..2579682 1 NC_002947.3 similar to GB:D12589, SP:P30296, and PID:217073; identified by sequence similarity; sugar ABC transporter ATP-binding protein 2579682 1045153 PP_2260 Pseudomonas putida KT2440 sugar ABC transporter ATP-binding protein NP_744409.1 2578588 D 160488 CDS NP_744410.1 26988985 1045154 2579682..2580779 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00968; sugar ABC transporter ATP-binding protein 2580779 1045154 PP_2261 Pseudomonas putida KT2440 sugar ABC transporter ATP-binding protein NP_744410.1 2579682 D 160488 CDS NP_744411.1 26988986 1045155 2580731..2581642 1 NC_002947.3 similar to GB:X15162, SP:P00475, GB:V00272, GB:Z19601, and PID:1789789; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein 2581642 1045155 PP_2262 Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_744411.1 2580731 D 160488 CDS NP_744412.1 26988987 1045156 2581646..2582446 1 NC_002947.3 similar to GP:9963816; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein 2582446 1045156 PP_2263 Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_744412.1 2581646 D 160488 CDS NP_744413.1 26988988 1045157 2582771..2584510 1 NC_002947.3 similar to GP:2828820; identified by sequence similarity; ABC transporter substrate-binding protein 2584510 1045157 PP_2264 Pseudomonas putida KT2440 ABC transporter substrate-binding protein NP_744413.1 2582771 D 160488 CDS NP_744414.1 26988989 1045158 complement(2584637..2585491) 1 NC_002947.3 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 2585491 folD-2 1045158 folD-2 Pseudomonas putida KT2440 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase NP_744414.1 2584637 R 160488 CDS NP_744415.1 26988990 1045161 2586633..2589191 1 NC_002947.3 similar to GB:M98835, SP:Q03314, and PID:152428; identified by sequence similarity; DNA-directed RNA polymerase, bacteriophage and mitochondrial type 2589191 1045161 PP_2266 Pseudomonas putida KT2440 DNA-directed RNA polymerase, bacteriophage and mitochondrial type NP_744415.1 2586633 D 160488 CDS NP_744416.1 26988991 1045163 2589951..2590631 1 NC_002947.3 similar to GP:6598999, and GP:6598999; identified by sequence similarity; phage single-stranded DNA-binding protein 2590631 1045163 PP_2267 Pseudomonas putida KT2440 phage single-stranded DNA-binding protein NP_744416.1 2589951 D 160488 CDS NP_744417.1 26988992 1045164 2590654..2591079 1 NC_002947.3 similar to SP:P29015, GB:X69109, PID:42740, GB:U00096, PID:1549275, PID:1742736, PID:1742746, PID:1787952, SP:P29015, GB:X69109, PID:42740, GB:U00096, PID:1549275, PID:1742736, PID:1742746, and PID:1787952; identified by sequence similarity; phage endodeoxyribonuclease I 2591079 1045164 PP_2268 Pseudomonas putida KT2440 phage endodeoxyribonuclease I NP_744417.1 2590654 D 160488 CDS NP_744418.1 26988993 1045165 2591082..2591531 1 NC_002947.3 similar to GP:6599001; identified by sequence similarity; N-acetylmuramoyl-L-alanine amidase 2591531 1045165 PP_2269 Pseudomonas putida KT2440 N-acetylmuramoyl-L-alanine amidase NP_744418.1 2591082 D 160488 CDS NP_744419.1 26988994 1045167 2591620..2593254 1 NC_002947.3 similar to GP:6599004, and GP:6573521; identified by sequence similarity; DNA primase/helicase 2593254 1045167 PP_2270 Pseudomonas putida KT2440 DNA primase/helicase NP_744419.1 2591620 D 160488 CDS NP_744420.1 26988995 1045168 complement(2593134..2594312) 1 NC_002947.3 hypothetical protein 2594312 1045168 PP_2271 Pseudomonas putida KT2440 hypothetical protein NP_744420.1 2593134 R 160488 CDS NP_744421.1 26988996 1045170 2594349..2594954 1 NC_002947.3 hypothetical protein 2594954 1045170 PP_2272 Pseudomonas putida KT2440 hypothetical protein NP_744421.1 2594349 D 160488 CDS NP_744422.1 26988997 1045172 2595114..2597201 1 NC_002947.3 similar to SP:P14899, and PID:2693; identified by sequence similarity; DNA polymerase 2597201 1045172 PP_2273 Pseudomonas putida KT2440 DNA polymerase NP_744422.1 2595114 D 160488 CDS NP_744423.1 26988998 1045173 2597215..2597430 1 NC_002947.3 hypothetical protein 2597430 1045173 PP_2274 Pseudomonas putida KT2440 hypothetical protein NP_744423.1 2597215 D 160488 CDS NP_744424.1 26988999 1045174 2597465..2597674 1 NC_002947.3 hypothetical protein 2597674 1045174 PP_2275 Pseudomonas putida KT2440 hypothetical protein NP_744424.1 2597465 D 160488 CDS NP_744425.1 26989000 1045177 2597776..2598375 1 NC_002947.3 similar to GP:6599017, SP:Q01960, GB:X66445, PID:39919, and GB:AL009126; identified by sequence similarity; phage exonuclease 2598375 1045177 PP_2276 Pseudomonas putida KT2440 phage exonuclease NP_744425.1 2597776 D 160488 CDS NP_744426.1 26989001 1045178 2598659..2600044 1 NC_002947.3 hypothetical protein 2600044 1045178 PP_2277 Pseudomonas putida KT2440 hypothetical protein NP_744426.1 2598659 D 160488 CDS NP_744427.1 26989002 1045179 2600099..2600293 1 NC_002947.3 hypothetical protein 2600293 1045179 PP_2278 Pseudomonas putida KT2440 hypothetical protein NP_744427.1 2600099 D 160488 CDS NP_744428.1 26989003 1045180 2600521..2602095 1 NC_002947.3 similar to SP:P06194, GB:X02604, PID:43773, SP:Q01960, GB:X66445, PID:39919, and GB:AL009126; identified by sequence similarity; head-to-tail joining protein 2602095 1045180 PP_2279 Pseudomonas putida KT2440 head-to-tail joining protein NP_744428.1 2600521 D 160488 CDS NP_744429.1 26989004 1045181 2602073..2602234 1 NC_002947.3 hypothetical protein 2602234 1045181 PP_2280 Pseudomonas putida KT2440 hypothetical protein NP_744429.1 2602073 D 160488 CDS NP_744430.1 26989005 1045183 2602234..2603013 1 NC_002947.3 similar to GP:6599024; identified by sequence similarity; capsid assembly protein 2603013 1045183 PP_2281 Pseudomonas putida KT2440 capsid assembly protein NP_744430.1 2602234 D 160488 CDS NP_744431.1 26989006 1045185 2603867..2604835 1 NC_002947.3 similar to SP:P24323, GB:X57315, PID:1573319, SP:P24323, GB:X57315, and PID:1573319; identified by sequence similarity; minor capsid protein 10 2604835 1045185 PP_2282 Pseudomonas putida KT2440 minor capsid protein 10 NP_744431.1 2603867 D 160488 CDS NP_744432.1 26989007 1045186 2604897..2605484 1 NC_002947.3 similar to SP:P32042; identified by sequence similarity; tail tubular protein A 2605484 1045186 PP_2283 Pseudomonas putida KT2440 tail tubular protein A NP_744432.1 2604897 D 160488 CDS NP_744433.1 26989008 1045191 2605488..2607833 1 NC_002947.3 similar to SP:P32042; identified by sequence similarity; tail tubular protein B 2607833 1045191 PP_2284 Pseudomonas putida KT2440 tail tubular protein B NP_744433.1 2605488 D 160488 CDS NP_744434.1 26989009 1045194 2608287..2608847 1 NC_002947.3 hypothetical protein 2608847 1045194 PP_2285 Pseudomonas putida KT2440 hypothetical protein NP_744434.1 2608287 D 160488 CDS NP_744435.1 26989010 1045196 2608857..2611046 1 NC_002947.3 similar to GP:6599032; identified by sequence similarity; hypothetical protein 2611046 1045196 PP_2286 Pseudomonas putida KT2440 hypothetical protein NP_744435.1 2608857 D 160488 CDS NP_744436.1 26989011 1045197 2611059..2615768 1 NC_002947.3 similar to GP:6599033; identified by sequence similarity; phage internal core protein 2615768 1045197 PP_2287 Pseudomonas putida KT2440 phage internal core protein NP_744436.1 2611059 D 160488 CDS NP_744437.1 26989012 1045199 2615831..2617471 1 NC_002947.3 similar to GP:6599034; identified by sequence similarity; phage tail fiber protein 2617471 1045199 PP_2288 Pseudomonas putida KT2440 phage tail fiber protein NP_744437.1 2615831 D 160488 CDS NP_744438.1 26989013 1045200 2617471..2617974 1 NC_002947.3 similar to GP:7523534, and GP:7523534; identified by sequence similarity; hypothetical protein 2617974 1045200 PP_2289 Pseudomonas putida KT2440 hypothetical protein NP_744438.1 2617471 D 160488 CDS NP_744439.1 26989014 1045228 2618021..2618257 1 NC_002947.3 hypothetical protein 2618257 1045228 PP_2290 Pseudomonas putida KT2440 hypothetical protein NP_744439.1 2618021 D 160488 CDS NP_744440.1 26989015 1045270 2618244..2618531 1 NC_002947.3 hypothetical protein 2618531 1045270 PP_2291 Pseudomonas putida KT2440 hypothetical protein NP_744440.1 2618244 D 160488 CDS NP_744441.1 26989016 1045271 complement(2618539..2619309) 1 NC_002947.3 hypothetical protein 2619309 1045271 PP_2292 Pseudomonas putida KT2440 hypothetical protein NP_744441.1 2618539 R 160488 CDS NP_744442.1 26989017 1045272 2619458..2621146 1 NC_002947.3 similar to SP:P06524, GB:X02423, GB:X03933, GB:X16905, PID:154815, PID:39184, PID:39186, SP:P06524, GB:X02423, GB:X03933, GB:X16905, PID:154815, PID:39184, and PID:39186; identified by sequence similarity; DNA maturase B 2621146 1045272 PP_2293 Pseudomonas putida KT2440 DNA maturase B NP_744442.1 2619458 D 160488 CDS NP_744443.1 26989018 1045273 2621183..2621623 1 NC_002947.3 hypothetical protein 2621623 1045273 PP_2294 Pseudomonas putida KT2440 hypothetical protein NP_744443.1 2621183 D 160488 CDS NP_744444.1 26989019 1045274 2623407..2623991 1 NC_002947.3 similar to GP:5834745, GB:M32103, SP:P16644, and PID:153035; identified by sequence similarity; antirestriction protein 2623991 1045274 PP_2295 Pseudomonas putida KT2440 antirestriction protein NP_744444.1 2623407 D 160488 CDS NP_744445.1 26989020 1045275 2624406..2624762 1 NC_002947.3 hypothetical protein 2624762 1045275 PP_2296 Pseudomonas putida KT2440 hypothetical protein NP_744445.1 2624406 D 160488 CDS NP_744446.1 26989021 1045276 2624995..2625819 1 NC_002947.3 similar to GP:6166382; identified by sequence similarity; integrative genetic element Ppu40, integrase 2625819 1045276 PP_2297 Pseudomonas putida KT2440 integrative genetic element Ppu40, integrase NP_744446.1 2624995 D 160488 CDS NP_744447.1 26989022 1045277 2626344..2626682 1 NC_002947.3 similar to GP:7292196; identified by sequence similarity; hypothetical protein 2626682 1045277 PP_2298 Pseudomonas putida KT2440 hypothetical protein NP_744447.1 2626344 D 160488 CDS NP_744448.1 26989023 1045278 2626913..2628244 1 NC_002947.3 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 2628244 tig 1045278 tig Pseudomonas putida KT2440 trigger factor NP_744448.1 2626913 D 160488 CDS NP_744449.1 26989024 1045280 2628336..2628977 1 NC_002947.3 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 2628977 clpP 1045280 clpP Pseudomonas putida KT2440 ATP-dependent Clp protease proteolytic subunit NP_744449.1 2628336 D 160488 CDS NP_744450.1 26989025 1045282 2629041..2630369 1 NC_002947.3 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 2630369 clpX 1045282 clpX Pseudomonas putida KT2440 ATP-dependent protease ATP-binding subunit ClpX NP_744450.1 2629041 D 160488 CDS NP_744451.1 26989026 1045283 2630533..2632929 1 NC_002947.3 identified by match to PFAM protein family HMM PF00004; ATP-dependent protease La 2632929 lon-2 1045283 lon-2 Pseudomonas putida KT2440 ATP-dependent protease La NP_744451.1 2630533 D 160488 CDS NP_744452.1 26989027 1045286 2633082..2633354 1 NC_002947.3 similar to SP:P05384; identified by sequence similarity; histone family protein DNA-binding protein 2633354 hupB 1045286 hupB Pseudomonas putida KT2440 histone family protein DNA-binding protein NP_744452.1 2633082 D 160488 CDS NP_744453.1 26989028 1045287 2633536..2635407 1 NC_002947.3 similar to SP:P17161, GB:X03147, and PID:43926; identified by sequence similarity; PpiC-type peptidyl-prolyl cis-trans isomerase 2635407 1045287 PP_2304 Pseudomonas putida KT2440 PpiC-type peptidyl-prolyl cis-trans isomerase NP_744453.1 2633536 D 160488 CDS NP_744454.1 26989029 1045288 complement(2635524..2636570) 1 NC_002947.3 similar to GP:9947608; identified by sequence similarity; patatin 2636570 1045288 PP_2305 Pseudomonas putida KT2440 patatin NP_744454.1 2635524 R 160488 CDS NP_744455.1 26989030 1045289 2636742..2637020 1 NC_002947.3 lipoprotein 2637020 1045289 PP_2306 Pseudomonas putida KT2440 lipoprotein NP_744455.1 2636742 D 160488 CDS NP_744456.1 26989031 1045292 2637035..2637814 1 NC_002947.3 CHAD domain-containing protein 2637814 1045292 PP_2307 Pseudomonas putida KT2440 CHAD domain-containing protein NP_744456.1 2637035 D 160488 CDS NP_744457.1 26989032 1045294 2637892..2638689 1 NC_002947.3 identified by match to PFAM protein family HMM PF02551; acyl-CoA thioesterase 2638689 1045294 PP_2308 Pseudomonas putida KT2440 acyl-CoA thioesterase NP_744457.1 2637892 D 160488 CDS NP_744458.1 26989033 1045295 complement(2638731..2639099) 1 NC_002947.3 similar to GP:9948957, and GP:9948957; identified by sequence similarity; hypothetical protein 2639099 1045295 PP_2309 Pseudomonas putida KT2440 hypothetical protein NP_744458.1 2638731 R 160488 CDS NP_744459.1 26989034 1045297 complement(2639175..2640653) 1 NC_002947.3 similar to GP:9948956; identified by sequence similarity; methyl-accepting chemotaxis sensory transducer 2640653 1045297 PP_2310 Pseudomonas putida KT2440 methyl-accepting chemotaxis sensory transducer NP_744459.1 2639175 R 160488 CDS NP_744460.1 26989035 1045298 complement(2640780..2641577) 1 NC_002947.3 similar to SP:P27859; identified by sequence similarity; TatD family hydrolase 2641577 1045298 PP_2311 Pseudomonas putida KT2440 TatD family hydrolase NP_744460.1 2640780 R 160488 CDS NP_744461.1 26989036 1045301 2641735..2643141 1 NC_002947.3 identified by match to PFAM protein family HMM PF00497; lytic transglycosylase 2643141 1045301 PP_2312 Pseudomonas putida KT2440 lytic transglycosylase NP_744461.1 2641735 D 160488 CDS NP_744462.1 26989037 1045302 2643254..2643691 1 NC_002947.3 identified by match to PFAM protein family HMM PF04173; DoxX family protein 2643691 1045302 PP_2313 Pseudomonas putida KT2440 DoxX family protein NP_744462.1 2643254 D 160488 CDS NP_744463.1 26989038 1045303 2643940..2644248 1 NC_002947.3 similar to GP:9948948; identified by sequence similarity; hypothetical protein 2644248 1045303 PP_2314 Pseudomonas putida KT2440 hypothetical protein NP_744463.1 2643940 D 160488 CDS NP_744464.1 26989039 1045305 2644260..2644748 1 NC_002947.3 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 2644748 greB 1045305 greB Pseudomonas putida KT2440 transcription elongation factor GreB NP_744464.1 2644260 D 160488 CDS NP_744465.1 26989040 1045306 complement(2644812..2647310) 1 NC_002947.3 similar to GP:9948946; identified by sequence similarity; hypothetical protein 2647310 1045306 PP_2316 Pseudomonas putida KT2440 hypothetical protein NP_744465.1 2644812 R 160488 CDS NP_744466.1 26989041 1045307 complement(2647316..2648002) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00005; ABC transporter ATP-binding protein 2648002 1045307 PP_2317 Pseudomonas putida KT2440 ABC transporter ATP-binding protein NP_744466.1 2647316 R 160488 CDS NP_744467.1 26989042 1045311 2648013..2648618 1 NC_002947.3 identified by match to PFAM protein family HMM PF00657; GDSL family lipase 2648618 1045311 PP_2318 Pseudomonas putida KT2440 GDSL family lipase NP_744467.1 2648013 D 160488 CDS NP_744468.1 26989043 1045312 2648647..2648967 1 NC_002947.3 similar to GP:9948943; identified by sequence similarity; hypothetical protein 2648967 1045312 PP_2319 Pseudomonas putida KT2440 hypothetical protein NP_744468.1 2648647 D 160488 CDS NP_744469.1 26989044 1045313 2649081..2650058 1 NC_002947.3 identified by match to PFAM protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 2650058 1045313 PP_2320 Pseudomonas putida KT2440 ErfK/YbiS/YcfS/YnhG family protein NP_744469.1 2649081 D 160488 CDS NP_744470.1 26989045 1045314 2650090..2650185 1 NC_002947.3 hypothetical protein 2650185 1045314 PP_2321 Pseudomonas putida KT2440 hypothetical protein NP_744470.1 2650090 D 160488 CDS NP_744471.1 26989046 1045315 complement(2650192..2650443) 1 NC_002947.3 similar to GP:3201890, and SP:P11221; identified by sequence similarity; outer membrane lipoprotein OprI 2650443 oprI 1045315 oprI Pseudomonas putida KT2440 outer membrane lipoprotein OprI NP_744471.1 2650192 R 160488 CDS NP_744472.1 26989047 1045316 2650801..2651232 1 NC_002947.3 similar to GP:9947727; identified by sequence similarity; hypothetical protein 2651232 1045316 PP_2323 Pseudomonas putida KT2440 hypothetical protein NP_744472.1 2650801 D 160488 CDS NP_744473.1 26989048 1045317 complement(2651302..2652414) 1 NC_002947.3 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 2652414 aroF-1 1045317 aroF-1 Pseudomonas putida KT2440 phospho-2-dehydro-3-deoxyheptonate aldolase NP_744473.1 2651302 R 160488 CDS NP_744474.1 26989049 1045318 2652611..2653558 1 NC_002947.3 catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase 2653558 1045318 PP_2325 Pseudomonas putida KT2440 2-dehydropantoate 2-reductase NP_744474.1 2652611 D 160488 CDS NP_744475.1 26989050 1045319 2653683..2654180 1 NC_002947.3 identified by match to PFAM protein family HMM PF00582; universal stress protein 2654180 1045319 PP_2326 Pseudomonas putida KT2440 universal stress protein NP_744475.1 2653683 D 160488 CDS NP_744476.1 26989051 1045321 2654309..2655283 1 NC_002947.3 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 2655283 cysB 1045321 cysB Pseudomonas putida KT2440 transcriptional regulator CysB NP_744476.1 2654309 D 160488 CDS NP_744477.1 26989052 1045322 complement(2655453..2656187) 1 NC_002947.3 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 2656187 cysH 1045322 cysH Pseudomonas putida KT2440 phosphoadenosine phosphosulfate reductase NP_744477.1 2655453 R 160488 CDS NP_744478.1 26989053 1045323 complement(2656268..2657608) 1 NC_002947.3 catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; para-aminobenzoate synthase subunit I 2657608 pabB 1045323 pabB Pseudomonas putida KT2440 para-aminobenzoate synthase subunit I NP_744478.1 2656268 R 160488 CDS NP_744479.1 26989054 1045324 complement(2657817..2658797) 1 NC_002947.3 alpha-L-glutamate ligase 2658797 1045324 PP_2330 Pseudomonas putida KT2440 alpha-L-glutamate ligase NP_744479.1 2657817 R 160488 CDS NP_744480.1 26989055 1045326 complement(2658797..2660332) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04093; hypothetical protein 2660332 1045326 PP_2331 Pseudomonas putida KT2440 hypothetical protein NP_744480.1 2658797 R 160488 CDS NP_744481.1 26989056 1045327 complement(2660338..2660874) 1 NC_002947.3 similar to GP:9947747; identified by sequence similarity; hypothetical protein 2660874 1045327 PP_2332 Pseudomonas putida KT2440 hypothetical protein NP_744481.1 2660338 R 160488 CDS NP_744482.1 26989057 1045328 2661181..2661897 1 NC_002947.3 identified by match to PFAM protein family HMM PF00392; GntR family transcriptional regulator 2661897 1045328 PP_2333 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_744482.1 2661181 D 160488 CDS NP_744483.1 26989058 1045329 2661894..2662784 1 NC_002947.3 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 2662784 prpB 1045329 prpB Pseudomonas putida KT2440 2-methylisocitrate lyase NP_744483.1 2661894 D 160488 CDS NP_744484.1 26989059 1045332 2662845..2663972 1 NC_002947.3 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 2663972 1045332 PP_2335 Pseudomonas putida KT2440 methylcitrate synthase NP_744484.1 2662845 D 160488 CDS NP_744485.1 26989060 1045334 2664135..2666723 1 NC_002947.3 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2666723 1045334 PP_2336 Pseudomonas putida KT2440 aconitate hydratase NP_744485.1 2664135 D 160488 CDS NP_744486.1 26989061 1045336 2666789..2667979 1 NC_002947.3 identified by match to PFAM protein family HMM PF04303; hypothetical protein 2667979 1045336 PP_2337 Pseudomonas putida KT2440 hypothetical protein NP_744486.1 2666789 D 160488 CDS NP_744487.1 26989062 1045337 2668146..2669630 1 NC_002947.3 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 2669630 prpD 1045337 prpD Pseudomonas putida KT2440 2-methylcitrate dehydratase NP_744487.1 2668146 D 160488 CDS NP_744488.1 26989063 1045338 complement(2669705..2672314) 1 NC_002947.3 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 2672314 acnB 1045338 acnB Pseudomonas putida KT2440 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase NP_744488.1 2669705 R 160488 CDS NP_744489.1 26989064 1045339 2672684..2673202 1 NC_002947.3 hypothetical protein 2673202 1045339 PP_2340 Pseudomonas putida KT2440 hypothetical protein NP_744489.1 2672684 D 160488 CDS NP_744490.1 26989065 1045340 complement(2673213..2673569) 1 NC_002947.3 similar to GB:L04569, GB:M57971, GB:Z34811, GB:Z34812, GB:Z34821, GB:Z34822, GB:Z34809, GB:Z34810, GB:Z34813, GB:Z34814, GB:Z34815, GB:Z34816, GB:Z34817, GB:Z34818, GB:Z34819, GB:Z34820, GB:M57972, GB:M91370, GB:Z26294, GB:Z26295, PID:291895, PID:501073, PID:508183, PID:508185, PID:508187, PID:508189, PID:508191, PID:508193, PID:508195, PID:508197, PID:508199, PID:508201, PID:509048, PID:509068, PID:509168, PID:509178, PID:509341, and PID:509344; identified by sequence similarity; 6-pyruvoyl tetrahydrobiopterin synthase 2673569 1045340 PP_2341 Pseudomonas putida KT2440 6-pyruvoyl tetrahydrobiopterin synthase NP_744490.1 2673213 R 160488 CDS NP_744491.1 26989066 1045341 complement(2673829..2674023) 1 NC_002947.3 hypothetical protein 2674023 1045341 PP_2342 Pseudomonas putida KT2440 hypothetical protein NP_744491.1 2673829 R 160488 CDS NP_744492.1 26989067 1045342 2674015..2674746 1 NC_002947.3 hypothetical protein 2674746 1045342 PP_2343 Pseudomonas putida KT2440 hypothetical protein NP_744492.1 2674015 D 160488 CDS NP_744493.1 26989068 1045343 complement(2675052..2676131) 1 NC_002947.3 hypothetical protein 2676131 1045343 PP_2344 Pseudomonas putida KT2440 hypothetical protein NP_744493.1 2675052 R 160488 CDS NP_744494.1 26989069 1045344 2676369..2676677 1 NC_002947.3 hypothetical protein 2676677 1045344 PP_2345 Pseudomonas putida KT2440 hypothetical protein NP_744494.1 2676369 D 160488 CDS NP_744495.1 26989070 1045345 2676677..2676991 1 NC_002947.3 hypothetical protein 2676991 1045345 PP_2346 Pseudomonas putida KT2440 hypothetical protein NP_744495.1 2676677 D 160488 CDS NP_744496.1 26989071 1045346 2676992..2677660 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01387; winged helix family two component transcriptional regulator 2677660 1045346 PP_2347 Pseudomonas putida KT2440 winged helix family two component transcriptional regulator NP_744496.1 2676992 D 160488 CDS NP_744497.1 26989072 1045349 2677657..2678976 1 NC_002947.3 identified by match to PFAM protein family HMM PF02518; integral membrane sensor signal transduction histidine kinase 2678976 1045349 PP_2348 Pseudomonas putida KT2440 integral membrane sensor signal transduction histidine kinase NP_744497.1 2677657 D 160488 CDS NP_744498.1 26989073 1045351 2679257..2680411 1 NC_002947.3 similar to GB:L11527, and PID:388363; identified by sequence similarity; hypothetical protein 2680411 1045351 PP_2349 Pseudomonas putida KT2440 hypothetical protein NP_744498.1 2679257 D 160488 CDS NP_744499.1 26989074 1045354 complement(2680385..2681251) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 2681251 1045354 PP_2350 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744499.1 2680385 R 160488 CDS NP_744500.1 26989075 1045356 2681432..2683321 1 NC_002947.3 similar to SP:P33905, PID:1163213, and PID:154813; identified by sequence similarity; acetyl-CoA synthetase 2683321 1045356 PP_2351 Pseudomonas putida KT2440 acetyl-CoA synthetase NP_744500.1 2681432 D 160488 CDS NP_744501.1 26989076 1045360 complement(2683434..2684561) 1 NC_002947.3 similar to GP:9950782; identified by sequence similarity; AFG1 family ATPase 2684561 1045360 PP_2352 Pseudomonas putida KT2440 AFG1 family ATPase NP_744501.1 2683434 R 160488 CDS NP_744502.1 26989077 1045363 2684622..2684915 1 NC_002947.3 hypothetical protein 2684915 1045363 PP_2353 Pseudomonas putida KT2440 hypothetical protein NP_744502.1 2684622 D 160488 CDS NP_744503.1 26989078 1045364 complement(2685331..2687718) 1 NC_002947.3 similar to GP:5052340; identified by sequence similarity; multi-sensor hybrid histidine kinase 2687718 1045364 PP_2354 Pseudomonas putida KT2440 multi-sensor hybrid histidine kinase NP_744503.1 2685331 R 160488 CDS NP_744504.1 26989079 1045380 complement(2687732..2688193) 1 NC_002947.3 similar to SP:P33786, and PID:48912; identified by sequence similarity; response regulator receiver protein 2688193 1045380 PP_2355 Pseudomonas putida KT2440 response regulator receiver protein NP_744504.1 2687732 R 160488 CDS NP_744505.1 26989080 1045381 complement(2688209..2690476) 1 NC_002947.3 similar to GP:6521382, and SP:Q9R6X3; identified by sequence similarity; phytochrome family protein 2690476 1045381 PP_2356 Pseudomonas putida KT2440 phytochrome family protein NP_744505.1 2688209 R 160488 CDS NP_744506.1 26989081 1045382 2690658..2691251 1 NC_002947.3 similar to GP:13649957; identified by sequence similarity; spore coat U domain-containing protein 2691251 1045382 PP_2357 Pseudomonas putida KT2440 spore coat U domain-containing protein NP_744506.1 2690658 D 160488 CDS NP_744507.1 26989082 1045384 2691282..2691818 1 NC_002947.3 similar to GP:13649956; identified by sequence similarity; spore coat U domain-containing protein 2691818 1045384 PP_2358 Pseudomonas putida KT2440 spore coat U domain-containing protein NP_744507.1 2691282 D 160488 CDS NP_744508.1 26989083 1045386 2691837..2692370 1 NC_002947.3 similar to GP:13649956; identified by sequence similarity; spore coat U domain-containing protein 2692370 1045386 PP_2359 Pseudomonas putida KT2440 spore coat U domain-containing protein NP_744508.1 2691837 D 160488 CDS NP_744509.1 26989084 1045387 2692374..2692877 1 NC_002947.3 similar to GP:13649957; identified by sequence similarity; spore coat U domain-containing protein 2692877 1045387 PP_2360 Pseudomonas putida KT2440 spore coat U domain-containing protein NP_744509.1 2692374 D 160488 CDS NP_744510.1 26989085 1045389 2692900..2693694 1 NC_002947.3 identified by match to PFAM protein family HMM PF00345; type 1 pili usher pathway chaperone CsuC 2693694 csuC 1045389 csuC Pseudomonas putida KT2440 type 1 pili usher pathway chaperone CsuC NP_744510.1 2692900 D 160488 CDS NP_744511.1 26989086 1045390 2693707..2696100 1 NC_002947.3 similar to GB:L10333, GB:L10334, GB:L10335, and PID:307311; identified by sequence similarity; fimbrial biogenesis outer membrane usher protein 2696100 csuD 1045390 csuD Pseudomonas putida KT2440 fimbrial biogenesis outer membrane usher protein NP_744511.1 2693707 D 160488 CDS NP_744512.1 26989087 1045391 2696097..2697068 1 NC_002947.3 similar to GP:8895715, and GP:13649960; identified by sequence similarity; spore coat U domain-containing protein 2697068 csuE 1045391 csuE Pseudomonas putida KT2440 spore coat U domain-containing protein NP_744512.1 2696097 D 160488 CDS NP_744513.1 26989088 1045392 complement(2697145..2698293) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00246; hypothetical protein 2698293 1045392 PP_2364 Pseudomonas putida KT2440 hypothetical protein NP_744513.1 2697145 R 160488 CDS NP_744514.1 26989089 1045393 complement(2698435..2699208) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 2699208 1045393 PP_2365 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_744514.1 2698435 R 160488 CDS NP_744515.1 26989090 1045394 complement(2699245..2700507) 1 NC_002947.3 similar to GB:X64171, GB:L13470, GB:M31218, SP:P05543, PID:338697, PID:37142, PID:405514, GB:X64063, SP:P28765, and PID:1335662; identified by sequence similarity; antibiotic MFS transporter 2700507 1045394 PP_2366 Pseudomonas putida KT2440 antibiotic MFS transporter NP_744515.1 2699245 R 160488 CDS NP_744516.1 26989091 1045396 complement(2700640..2701827) 1 NC_002947.3 similar to SP:P25156, GB:X59507, and PID:395159; identified by sequence similarity; major facilitator family transporter 2701827 1045396 PP_2367 Pseudomonas putida KT2440 major facilitator family transporter NP_744516.1 2700640 R 160488 CDS NP_744517.1 26989092 1045398 complement(2701833..2702636) 1 NC_002947.3 catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; 2,5-diketo-D-gluconate reductase B 2702636 dkgB 1045398 dkgB Pseudomonas putida KT2440 2,5-diketo-D-gluconate reductase B NP_744517.1 2701833 R 160488 CDS NP_744518.1 26989093 1045399 2702841..2707028 1 NC_002947.3 identified by match to PFAM protein family HMM PF00560; hypothetical protein 2707028 1045399 PP_2369 Pseudomonas putida KT2440 hypothetical protein NP_744518.1 2702841 D 160488 CDS NP_744519.1 26989094 1045400 complement(2707075..2707569) 1 NC_002947.3 hypothetical protein 2707569 1045400 PP_2370 Pseudomonas putida KT2440 hypothetical protein NP_744519.1 2707075 R 160488 CDS NP_744520.1 26989095 1045402 complement(2707553..2709205) 1 NC_002947.3 similar to GB:M22453, GB:J03912, GB:J05253, SP:P10745, PID:186541, PID:307074, PID:307075, PID:33961, and PID:386835; identified by sequence similarity; sulfite reductase hemoprotein subunit beta 2709205 cysI 1045402 cysI Pseudomonas putida KT2440 sulfite reductase hemoprotein subunit beta NP_744520.1 2707553 R 160488 CDS NP_744521.1 26989096 1045403 2709419..2710495 1 NC_002947.3 similar to GB:D13638, and PID:285981; identified by sequence similarity; LacI family transcriptional regulator 2710495 1045403 PP_2372 Pseudomonas putida KT2440 LacI family transcriptional regulator NP_744521.1 2709419 D 160488 CDS NP_744522.1 26989097 1045404 2710539..2710694 1 NC_002947.3 hypothetical protein 2710694 1045404 PP_2373 Pseudomonas putida KT2440 hypothetical protein NP_744522.1 2710539 D 160488 CDS NP_744523.1 26989098 1045406 complement(2711008..2711250) 1 NC_002947.3 hypothetical protein 2711250 1045406 PP_2374 Pseudomonas putida KT2440 hypothetical protein NP_744523.1 2711008 R 160488 CDS NP_744524.1 26989099 1045407 complement(2711393..2715100) 1 NC_002947.3 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 2715100 metH 1045407 metH Pseudomonas putida KT2440 B12-dependent methionine synthase NP_744524.1 2711393 R 160488 CDS NP_744525.1 26989100 1045408 2715283..2717583 1 NC_002947.3 similar to GP:5257182, and GP:5257182; identified by sequence similarity; fatty acid cis/trans isomerase 2717583 cti 1045408 cti Pseudomonas putida KT2440 fatty acid cis/trans isomerase NP_744525.1 2715283 D 160488 CDS NP_744526.1 26989101 1045410 2717661..2718812 1 NC_002947.3 similar to GP:5257179, and GP:5257179; identified by sequence similarity; acyltransferase 2718812 1045410 PP_2377 Pseudomonas putida KT2440 acyltransferase NP_744526.1 2717661 D 160488 CDS NP_744527.1 26989102 1045411 2718871..2719455 1 NC_002947.3 similar to GB:M68840, GB:X60819, SP:P21397, PID:187351, PID:187353, and PID:187355; identified by sequence similarity; hypothetical protein 2719455 yhgI 1045411 yhgI Pseudomonas putida KT2440 hypothetical protein NP_744527.1 2718871 D 160488 CDS NP_744528.1 26989103 1045412 2719589..2720260 1 NC_002947.3 similar to GP:3298363, SP:P04127, GB:X02921, SP:P02972, SP:P04740, GB:M68060, and GB:X03391; identified by sequence similarity; electron transport protein SCO1/SenC 2720260 1045412 PP_2379 Pseudomonas putida KT2440 electron transport protein SCO1/SenC NP_744528.1 2719589 D 160488 CDS NP_744529.1 26989104 1045413 2720261..2720743 1 NC_002947.3 similar to GB:D13178, SP:Q08751, PID:398125, GB:D13178, SP:Q08751, and PID:398125; identified by sequence similarity; hypothetical protein 2720743 1045413 PP_2380 Pseudomonas putida KT2440 hypothetical protein NP_744529.1 2720261 D 160488 CDS NP_744530.1 26989105 1045414 complement(2720793..2721035) 1 NC_002947.3 hypothetical protein 2721035 1045414 PP_2381 Pseudomonas putida KT2440 hypothetical protein NP_744530.1 2720793 R 160488 CDS NP_744531.1 26989106 1045415 2721390..2722694 1 NC_002947.3 similar to GB:M11189, SP:P04190, SP:P14488, and PID:142604; identified by sequence similarity; transporter 2722694 1045415 PP_2382 Pseudomonas putida KT2440 transporter NP_744531.1 2721390 D 160488 CDS NP_744532.1 26989107 1045416 complement(2722743..2723588) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 2723588 1045416 PP_2383 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_744532.1 2722743 R 160488 CDS NP_744533.1 26989108 1045417 complement(2723585..2723899) 1 NC_002947.3 branched chain amino acid ABC transporter 2723899 1045417 PP_2384 Pseudomonas putida KT2440 branched chain amino acid ABC transporter NP_744533.1 2723585 R 160488 CDS NP_744534.1 26989109 1045418 complement(2723896..2724588) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03591; AzlC family protein 2724588 azlC 1045418 azlC Pseudomonas putida KT2440 AzlC family protein NP_744534.1 2723896 R 160488 CDS NP_744535.1 26989110 1045420 complement(2724736..2725566) 1 NC_002947.3 hypothetical protein 2725566 1045420 PP_2386 Pseudomonas putida KT2440 hypothetical protein NP_744535.1 2724736 R 160488 CDS NP_744536.1 26989111 1045421 complement(2725570..2726652) 1 NC_002947.3 hypothetical protein 2726652 1045421 PP_2387 Pseudomonas putida KT2440 hypothetical protein NP_744536.1 2725570 R 160488 CDS NP_744537.1 26989112 1045423 complement(2726692..2727318) 1 NC_002947.3 similar to GB:M60854, SP:P17008, and PID:338447; identified by sequence similarity; amino acid transporter LysE 2727318 1045423 PP_2388 Pseudomonas putida KT2440 amino acid transporter LysE NP_744537.1 2726692 R 160488 CDS NP_744538.1 26989113 1045425 complement(2727321..2728109) 1 NC_002947.3 similar to GB:L09706, GB:L09707, GB:L09708, GB:X04481, GB:M15549, SP:P06681, PID:187765, PID:2347131, PID:298124, PID:34628, PID:467309, and PID:553209; identified by sequence similarity; hypothetical protein 2728109 1045425 PP_2389 Pseudomonas putida KT2440 hypothetical protein NP_744538.1 2727321 R 160488 CDS NP_744539.1 26989114 1045426 2728270..2729190 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 2729190 1045426 PP_2390 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744539.1 2728270 D 160488 CDS NP_744540.1 26989115 1045428 2729392..2730594 1 NC_002947.3 identified by match to PFAM protein family HMM PF04284; major facilitator family transporter 2730594 1045428 PP_2392 Pseudomonas putida KT2440 major facilitator family transporter NP_744540.1 2729392 D 160488 CDS NP_744541.1 26989116 1045429 2730661..2733021 1 NC_002947.3 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 2733021 polB 1045429 polB Pseudomonas putida KT2440 DNA polymerase II NP_744541.1 2730661 D 160488 CDS NP_744542.1 26989117 1045430 2733100..2737521 1 NC_002947.3 identified by match to PFAM protein family HMM PF00560; hypothetical protein 2737521 1045430 PP_2394 Pseudomonas putida KT2440 hypothetical protein NP_744542.1 2733100 D 160488 CDS NP_744543.1 26989118 1045431 2737619..2742112 1 NC_002947.3 identified by match to PFAM protein family HMM PF00560; hypothetical protein 2742112 1045431 PP_2395 Pseudomonas putida KT2440 hypothetical protein NP_744543.1 2737619 D 160488 CDS NP_744544.1 26989119 1045432 2742311..2742892 1 NC_002947.3 hypothetical protein 2742892 1045432 PP_2396 Pseudomonas putida KT2440 hypothetical protein NP_744544.1 2742311 D 160488 CDS NP_744545.1 26989120 1045434 2742902..2743558 1 NC_002947.3 identified by match to PFAM protein family HMM PF00036; EF hand domain-containing protein 2743558 1045434 PP_2397 Pseudomonas putida KT2440 EF hand domain-containing protein NP_744545.1 2742902 D 160488 CDS NP_744546.1 26989121 1045435 2743633..2744466 1 NC_002947.3 hypothetical protein 2744466 1045435 PP_2398 Pseudomonas putida KT2440 hypothetical protein NP_744546.1 2743633 D 160488 CDS NP_744547.1 26989122 1045493 2744459..2745154 1 NC_002947.3 hypothetical protein 2745154 1045493 PP_2399 Pseudomonas putida KT2440 hypothetical protein NP_744547.1 2744459 D 160488 CDS NP_744548.1 26989123 1045527 complement(2745189..2745677) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04173; DoxX family protein 2745677 1045527 PP_2400 Pseudomonas putida KT2440 DoxX family protein NP_744548.1 2745189 R 160488 CDS NP_744549.1 26989124 1045528 complement(2745692..2746309) 1 NC_002947.3 hypothetical protein 2746309 1045528 PP_2401 Pseudomonas putida KT2440 hypothetical protein NP_744549.1 2745692 R 160488 CDS NP_744550.1 26989125 1045529 complement(2746479..2747765) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02518; integral membrane sensor signal transduction histidine kinase 2747765 1045529 PP_2402 Pseudomonas putida KT2440 integral membrane sensor signal transduction histidine kinase NP_744550.1 2746479 R 160488 CDS NP_744551.1 26989126 1045530 complement(2747762..2748502) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00072; winged helix family two component transcriptional regulator 2748502 ompR-2 1045530 ompR-2 Pseudomonas putida KT2440 winged helix family two component transcriptional regulator NP_744551.1 2747762 R 160488 CDS NP_744552.1 26989127 1045531 2748723..2748998 1 NC_002947.3 hypothetical protein 2748998 1045531 PP_2404 Pseudomonas putida KT2440 hypothetical protein NP_744552.1 2748723 D 160488 CDS NP_744553.1 26989128 1045532 2748988..2749524 1 NC_002947.3 similar to GP:10175285, GB:M76125, GB:S65125, GB:X57019, GB:X66029, GB:X66030, SP:P30530, PID:37593, and PID:37595; identified by sequence similarity; redoxin domain-containing protein 2749524 1045532 PP_2405 Pseudomonas putida KT2440 redoxin domain-containing protein NP_744553.1 2748988 D 160488 CDS NP_744554.1 26989129 1045533 complement(2749638..2750486) 1 NC_002947.3 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 2750486 aroE 1045533 aroE Pseudomonas putida KT2440 shikimate 5-dehydrogenase NP_744554.1 2749638 R 160488 CDS NP_744555.1 26989130 1045534 complement(2750483..2750932) 1 NC_002947.3 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 2750932 aroQ-2 1045534 aroQ-2 Pseudomonas putida KT2440 3-dehydroquinate dehydratase NP_744555.1 2750483 R 160488 CDS NP_744556.1 26989131 1045535 2751171..2752448 1 NC_002947.3 similar to SP:P13509; identified by sequence similarity; cobalt-zinc-cadmium resistance protein CzcC 2752448 1045535 PP_2408 Pseudomonas putida KT2440 cobalt-zinc-cadmium resistance protein CzcC NP_744556.1 2751171 D 160488 CDS NP_744557.1 26989132 1045536 2752441..2753655 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01730; cobalt-zinc-cadmium resistance protein CzcB 2753655 1045536 PP_2409 Pseudomonas putida KT2440 cobalt-zinc-cadmium resistance protein CzcB NP_744557.1 2752441 D 160488 CDS NP_744558.1 26989133 1045537 2753672..2756818 1 NC_002947.3 identified by match to PFAM protein family HMM PF04295; cobalt-zinc-cadmium resistance protein CzcA 2756818 1045537 PP_2410 Pseudomonas putida KT2440 cobalt-zinc-cadmium resistance protein CzcA NP_744558.1 2753672 D 160488 CDS NP_744559.1 26989134 1045538 complement(2756851..2758188) 1 NC_002947.3 similar to GP:8250606; identified by sequence similarity; major facilitator family transporter 2758188 1045538 PP_2411 Pseudomonas putida KT2440 major facilitator family transporter NP_744559.1 2756851 R 160488 CDS NP_744560.1 26989135 1045539 complement(2758369..2759160) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01007; ParA family protein 2759160 1045539 PP_2412 Pseudomonas putida KT2440 ParA family protein NP_744560.1 2758369 R 160488 CDS NP_744561.1 26989136 1045540 complement(2759305..2760939) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00990; diguanylate cyclase 2760939 1045540 PP_2413 Pseudomonas putida KT2440 diguanylate cyclase NP_744561.1 2759305 R 160488 CDS NP_744562.1 26989137 1045541 complement(2760936..2761415) 1 NC_002947.3 hypothetical protein 2761415 1045541 PP_2414 Pseudomonas putida KT2440 hypothetical protein NP_744562.1 2760936 R 160488 CDS NP_744563.1 26989138 1045542 2761414..2762046 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01575; acetyltransferase 2762046 1045542 PP_2415 Pseudomonas putida KT2440 acetyltransferase NP_744563.1 2761414 D 160488 CDS NP_744564.1 26989139 1045543 complement(2762103..2762891) 1 NC_002947.3 similar to GP:8217385, GB:M18461, GB:S60788, PID:1552514, PID:339016, PID:575274, and PID:930052; identified by sequence similarity; iron ABC transporter ATP-binding protein 2762891 1045543 PP_2416 Pseudomonas putida KT2440 iron ABC transporter ATP-binding protein NP_744564.1 2762103 R 160488 CDS NP_744565.1 26989140 1045544 complement(2762888..2763907) 1 NC_002947.3 similar to GP:8546927; identified by sequence similarity; transport system permease 2763907 1045544 PP_2417 Pseudomonas putida KT2440 transport system permease NP_744565.1 2762888 R 160488 CDS NP_744566.1 26989141 1045545 complement(2763904..2764998) 1 NC_002947.3 similar to GP:11071205; identified by sequence similarity; hypothetical protein 2764998 1045545 PP_2418 Pseudomonas putida KT2440 hypothetical protein NP_744566.1 2763904 R 160488 CDS NP_744567.1 26989142 1045546 complement(2765252..2766517) 1 NC_002947.3 similar to GP:9951108; identified by sequence similarity; hypothetical protein 2766517 1045546 PP_2419 Pseudomonas putida KT2440 hypothetical protein NP_744567.1 2765252 R 160488 CDS NP_744568.1 26989143 1045547 complement(2766530..2768716) 1 NC_002947.3 similar to GB:M13295, GB:M13296, GB:M13297, GB:M13298, GB:M13299, SP:P03999, PID:180685, and PID:2138076; identified by sequence similarity; TonB-dependent siderophore receptor 2768716 1045547 PP_2420 Pseudomonas putida KT2440 TonB-dependent siderophore receptor NP_744568.1 2766530 R 160488 CDS NP_744569.1 26989144 1045548 complement(2769130..2769681) 1 NC_002947.3 similar to GB:X00264, SP:P01229, SP:P01233, and PID:2292893; identified by sequence similarity; acetyltransferase 2769681 1045548 PP_2421 Pseudomonas putida KT2440 acetyltransferase NP_744569.1 2769130 R 160488 CDS NP_744570.1 26989145 1045549 complement(2769778..2770131) 1 NC_002947.3 similar to GB:J00128, GB:M58569, GB:M64982, GB:J00127, GB:K02272, GB:M26878, SP:P02671, GB:S82092, PID:182407, PID:182424, PID:182426, PID:182428, PID:458554, and PID:458555; identified by sequence similarity; alkylhydroperoxidase 2770131 1045549 PP_2422 Pseudomonas putida KT2440 alkylhydroperoxidase NP_744570.1 2769778 R 160488 CDS NP_744571.1 26989146 1045550 complement(2770240..2771139) 1 NC_002947.3 hypothetical protein 2771139 1045550 PP_2423 Pseudomonas putida KT2440 hypothetical protein NP_744571.1 2770240 R 160488 CDS NP_744572.1 26989147 1045551 2771298..2771843 1 NC_002947.3 similar to GP:9948949, and SP:P37025; identified by sequence similarity; 2'-5' RNA ligase 2771843 1045551 PP_2424 Pseudomonas putida KT2440 2'-5' RNA ligase NP_744572.1 2771298 D 160488 CDS NP_744573.1 26989148 1045552 complement(2771907..2772812) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 2772812 1045552 PP_2425 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_744573.1 2771907 R 160488 CDS NP_744574.1 26989149 1045553 2772994..2774046 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01751; D-isomer specific 2-hydroxyacid dehydrogenase 2774046 1045553 PP_2426 Pseudomonas putida KT2440 D-isomer specific 2-hydroxyacid dehydrogenase NP_744574.1 2772994 D 160488 CDS NP_744575.1 26989150 1045554 2774213..2775316 1 NC_002947.3 identified by match to PFAM protein family HMM PF03760; hypothetical protein 2775316 1045554 PP_2427 Pseudomonas putida KT2440 hypothetical protein NP_744575.1 2774213 D 160488 CDS NP_744576.1 26989151 1045555 2775651..2776877 1 NC_002947.3 similar to GP:5777418; identified by sequence similarity; sugar efflux transporter 2776877 1045555 PP_2428 Pseudomonas putida KT2440 sugar efflux transporter NP_744576.1 2775651 D 160488 CDS NP_744577.1 26989152 1045556 complement(2776917..2777501) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04241; lysine exporter protein LysE/YggA 2777501 1045556 PP_2429 Pseudomonas putida KT2440 lysine exporter protein LysE/YggA NP_744577.1 2776917 R 160488 CDS NP_744578.1 26989153 1045557 complement(2777552..2778382) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 2778382 1045557 PP_2430 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_744578.1 2777552 R 160488 CDS NP_744579.1 26989154 1045568 complement(2778431..2779354) 1 NC_002947.3 similar to GP:9949718; identified by sequence similarity; LysR family transcriptional regulator 2779354 1045568 PP_2431 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744579.1 2778431 R 160488 CDS NP_744580.1 26989155 1045601 2779458..2780111 1 NC_002947.3 catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase 2780111 1045601 PP_2432 Pseudomonas putida KT2440 dihydropteridine reductase NP_744580.1 2779458 D 160488 CDS NP_744581.1 26989156 1045602 2780224..2780703 1 NC_002947.3 hypothetical protein 2780703 1045602 PP_2433 Pseudomonas putida KT2440 hypothetical protein NP_744581.1 2780224 D 160488 CDS NP_744582.1 26989157 1045603 2780700..2781137 1 NC_002947.3 similar to GP:10719750, and GP:10719750; identified by sequence similarity; RES domain-containing protein 2781137 1045603 PP_2434 Pseudomonas putida KT2440 RES domain-containing protein NP_744582.1 2780700 D 160488 CDS NP_744583.1 26989158 1045604 complement(2781145..2782362) 1 NC_002947.3 similar to SP:P39171; identified by sequence similarity; cysteine desulfurase 2782362 iscS-2 1045604 iscS-2 Pseudomonas putida KT2440 cysteine desulfurase NP_744583.1 2781145 R 160488 CDS NP_744584.1 26989159 1045605 complement(2782493..2783419) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 2783419 1045605 PP_2436 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744584.1 2782493 R 160488 CDS NP_744585.1 26989160 1045606 2783545..2784789 1 NC_002947.3 identified by match to PFAM protein family HMM PF00441; acyl-CoA dehydrogenase 2784789 1045606 PP_2437 Pseudomonas putida KT2440 acyl-CoA dehydrogenase NP_744585.1 2783545 D 160488 CDS NP_744586.1 26989161 1045607 complement(2785601..2786665) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03741; hypothetical protein 2786665 1045607 PP_2438 Pseudomonas putida KT2440 hypothetical protein NP_744586.1 2785601 R 160488 CDS NP_744587.1 26989162 1045608 2786987..2787550 1 NC_002947.3 similar to GP:3298355, and SP:P26427; identified by sequence similarity; alkyl hydroperoxide reductase 2787550 ahpC 1045608 ahpC Pseudomonas putida KT2440 alkyl hydroperoxide reductase NP_744587.1 2786987 D 160488 CDS NP_744588.1 26989163 1045609 2787675..2789237 1 NC_002947.3 similar to SP:O82864, GB:J02708, SP:P05705, PID:146278, GB:U00096, PID:1789054, and PID:1800088; identified by sequence similarity; alkyl hydroperoxide reductase 2789237 ahpF 1045609 ahpF Pseudomonas putida KT2440 alkyl hydroperoxide reductase NP_744588.1 2787675 D 160488 CDS NP_744589.1 26989164 1045610 2789299..2789592 1 NC_002947.3 hypothetical protein 2789592 1045610 PP_2441 Pseudomonas putida KT2440 hypothetical protein NP_744589.1 2789299 D 160488 CDS NP_744590.1 26989165 1045611 complement(2789597..2790244) 1 NC_002947.3 similar to GP:9949595; identified by sequence similarity; hypothetical protein 2790244 1045611 PP_2442 Pseudomonas putida KT2440 hypothetical protein NP_744590.1 2789597 R 160488 CDS NP_744591.1 26989166 1045612 complement(2790333..2791544) 1 NC_002947.3 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 2791544 1045612 PP_2443 Pseudomonas putida KT2440 serine/threonine transporter SstT NP_744591.1 2790333 R 160488 CDS NP_744592.1 26989167 1045613 complement(2791642..2792535) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 2792535 1045613 PP_2444 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744592.1 2791642 R 160488 CDS NP_744593.1 26989168 1045614 2792936..2793688 1 NC_002947.3 similar to GB:X14975, GB:M14666, SP:P15812, PID:180052, PID:296640, PID:496891, and PID:496893; identified by sequence similarity; integral membrane protein TerC 2793688 1045614 PP_2445 Pseudomonas putida KT2440 integral membrane protein TerC NP_744593.1 2792936 D 160488 CDS NP_744594.1 26989169 1045615 complement(2793815..2794000) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01654; hypothetical protein 2794000 1045615 PP_2446 Pseudomonas putida KT2440 hypothetical protein NP_744594.1 2793815 R 160488 CDS NP_744595.1 26989170 1045616 2794155..2794889 1 NC_002947.3 similar to GP:9948859; identified by sequence similarity; hypothetical protein 2794889 1045616 PP_2447 Pseudomonas putida KT2440 hypothetical protein NP_744595.1 2794155 D 160488 CDS NP_744596.1 26989171 1045617 complement(2795001..2796284) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01593; FAD dependent oxidoreductase 2796284 1045617 PP_2448 Pseudomonas putida KT2440 FAD dependent oxidoreductase NP_744596.1 2795001 R 160488 CDS NP_744597.1 26989172 1045618 2796849..2797514 1 NC_002947.3 sporulation domain-containing protein 2797514 1045618 PP_2449 Pseudomonas putida KT2440 sporulation domain-containing protein NP_744597.1 2796849 D 160488 CDS NP_744598.1 26989173 1045619 2797613..2798038 1 NC_002947.3 similar to GP:10280523, and GP:10280523; identified by sequence similarity; hypothetical protein 2798038 1045619 PP_2450 Pseudomonas putida KT2440 hypothetical protein NP_744598.1 2797613 D 160488 CDS NP_744599.1 26989174 1045620 complement(2798042..2798734) 1 NC_002947.3 similar to GP:9948828, GB:M28826, GB:M22168, GB:M22169, GB:M22170, GB:M22171, GB:M22172, GB:M22173, GB:M14665, SP:P29016, PID:180050, PID:180056, and PID:180064; identified by sequence similarity; deoxyribonuclease I 2798734 endA-1 1045620 endA-1 Pseudomonas putida KT2440 deoxyribonuclease I NP_744599.1 2798042 R 160488 CDS NP_744600.1 26989175 1045621 complement(2798741..2798983) 1 NC_002947.3 hypothetical protein 2798983 1045621 PP_2452 Pseudomonas putida KT2440 hypothetical protein NP_744600.1 2798741 R 160488 CDS NP_744601.1 26989176 1045622 complement(2799199..2800287) 1 NC_002947.3 similar to GP:2392795, and SP:P10182; identified by sequence similarity; type II L-asparaginase 2800287 ansA 1045622 ansA Pseudomonas putida KT2440 type II L-asparaginase NP_744601.1 2799199 R 160488 CDS NP_744602.1 26989177 1045623 2800655..2801614 1 NC_002947.3 similar to GB:M26061, SP:P16499, and PID:2366987; identified by sequence similarity; monosaccharide-transporting ATPase 2801614 rbsB 1045623 rbsB Pseudomonas putida KT2440 monosaccharide-transporting ATPase NP_744602.1 2800655 D 160488 CDS NP_744603.1 26989178 1045624 2801614..2803188 1 NC_002947.3 similar to GB:L08239, and PID:950412; identified by sequence similarity; ribose ABC transporter ATP-binding protein 2803188 rbsA 1045624 rbsA Pseudomonas putida KT2440 ribose ABC transporter ATP-binding protein NP_744603.1 2801614 D 160488 CDS NP_744604.1 26989179 1045625 2803185..2804180 1 NC_002947.3 identified by match to PFAM protein family HMM PF02653; monosaccharide-transporting ATPase 2804180 rbsC 1045625 rbsC Pseudomonas putida KT2440 monosaccharide-transporting ATPase NP_744604.1 2803185 D 160488 CDS NP_744605.1 26989180 1045626 2804185..2805207 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01481; ribose operon repressor 2805207 rbsR 1045626 rbsR Pseudomonas putida KT2440 ribose operon repressor NP_744605.1 2804185 D 160488 CDS NP_744606.1 26989181 1045627 2805223..2806131 1 NC_002947.3 similar to GB:M77016, SP:P28289, and PID:339948; identified by sequence similarity; ribokinase 2806131 rbsK 1045627 rbsK Pseudomonas putida KT2440 ribokinase NP_744606.1 2805223 D 160488 CDS NP_744607.1 26989182 1045628 2806128..2806526 1 NC_002947.3 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 2806526 1045628 PP_2459 Pseudomonas putida KT2440 D-ribose pyranase NP_744607.1 2806128 D 160488 CDS NP_744608.1 26989183 1045629 2806624..2807592 1 NC_002947.3 identified by match to PFAM protein family HMM PF01156; inosine/uridine-preferring nucleoside hydrolase 2807592 1045629 PP_2460 Pseudomonas putida KT2440 inosine/uridine-preferring nucleoside hydrolase NP_744608.1 2806624 D 160488 CDS NP_744609.1 26989184 1045630 complement(2807564..2807776) 1 NC_002947.3 hypothetical protein 2807776 1045630 PP_2461 Pseudomonas putida KT2440 hypothetical protein NP_744609.1 2807564 R 160488 CDS NP_744610.1 26989185 1045631 2807997..2808371 1 NC_002947.3 similar to GP:9947968, and GP:9947968; identified by sequence similarity; hypothetical protein 2808371 1045631 PP_2462 Pseudomonas putida KT2440 hypothetical protein NP_744610.1 2807997 D 160488 CDS NP_744611.1 26989186 1045632 complement(2808572..2808784) 1 NC_002947.3 similar to GB:M84993, SP:P26462, GB:X52093, PID:154021, SP:P31667, PID:606346, GB:U00096, and PID:1789816; identified by sequence similarity; cold shock protein CspA 2808784 cspA-2 1045632 cspA-2 Pseudomonas putida KT2440 cold shock protein CspA NP_744611.1 2808572 R 160488 CDS NP_744612.1 26989187 1045633 2808902..2809291 1 NC_002947.3 hypothetical protein 2809291 1045633 PP_2464 Pseudomonas putida KT2440 hypothetical protein NP_744612.1 2808902 D 160488 CDS NP_744613.1 26989188 1045634 2809591..2811513 1 NC_002947.3 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2811513 thrS 1045634 thrS Pseudomonas putida KT2440 threonyl-tRNA synthetase NP_744613.1 2809591 D 160488 CDS NP_744614.1 26989189 1045635 2811531..2812064 1 NC_002947.3 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 2812064 infC 1045635 infC Pseudomonas putida KT2440 translation initiation factor IF-3 NP_744614.1 2811531 D 160488 CDS NP_744615.2 161378131 1045636 2812125..2812319 1 NC_002947.3 identified by match to PFAM protein family HMM PF01632; 50S ribosomal protein L35 2812319 rpmI 1045636 rpmI Pseudomonas putida KT2440 50S ribosomal protein L35 NP_744615.2 2812125 D 160488 CDS NP_744616.1 26989191 1045637 2812347..2812703 1 NC_002947.3 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2812703 rplT 1045637 rplT Pseudomonas putida KT2440 50S ribosomal protein L20 NP_744616.1 2812347 D 160488 CDS NP_744617.1 26989192 1045638 2812813..2813829 1 NC_002947.3 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2813829 pheS 1045638 pheS Pseudomonas putida KT2440 phenylalanyl-tRNA synthetase subunit alpha NP_744617.1 2812813 D 160488 CDS NP_744618.1 26989193 1045639 2813861..2816242 1 NC_002947.3 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2816242 pheT 1045639 pheT Pseudomonas putida KT2440 phenylalanyl-tRNA synthetase subunit beta NP_744618.1 2813861 D 160488 CDS NP_744619.1 26989194 1045640 2816247..2816549 1 NC_002947.3 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2816549 ihfA 1045640 ihfA Pseudomonas putida KT2440 integration host factor subunit alpha NP_744619.1 2816247 D 160488 CDS NP_744620.1 26989195 1045641 2816530..2816886 1 NC_002947.3 identified by match to PFAM protein family HMM PF00376; hypothetical protein 2816886 1045641 PP_2472 Pseudomonas putida KT2440 hypothetical protein NP_744620.1 2816530 D 160488 CDS NP_744621.1 26989196 1045642 2819189..2820196 1 NC_002947.3 hypothetical protein 2820196 1045642 PP_2473 Pseudomonas putida KT2440 hypothetical protein NP_744621.1 2819189 D 160488 CDS NP_744622.1 26989197 1045643 complement(2820708..2821328) 1 NC_002947.3 similar to GP:8037803, and GP:8037803; identified by sequence similarity; glutathione S-transferase 2821328 1045643 PP_2474 Pseudomonas putida KT2440 glutathione S-transferase NP_744622.1 2820708 R 160488 CDS NP_744623.1 26989198 1045644 2821719..2822312 1 NC_002947.3 identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 2822312 1045644 PP_2475 Pseudomonas putida KT2440 TetR family transcriptional regulator NP_744623.1 2821719 D 160488 CDS NP_744624.1 26989199 1045645 2822425..2823459 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01751; zinc-containing alcohol dehydrogenase 2823459 1045645 PP_2476 Pseudomonas putida KT2440 zinc-containing alcohol dehydrogenase NP_744624.1 2822425 D 160488 CDS NP_744625.1 26989200 1045646 2823922..2824383 1 NC_002947.3 similar to GB:U09367, SP:P52737, and PID:487785; identified by sequence similarity; isoquinoline 1-oxidoreductase subunit alpha 2824383 1045646 PP_2477 Pseudomonas putida KT2440 isoquinoline 1-oxidoreductase subunit alpha NP_744625.1 2823922 D 160488 CDS NP_744626.1 26989201 1045647 2824385..2826577 1 NC_002947.3 similar to GB:U09367, SP:P52737, and PID:487785; identified by sequence similarity; isoquinoline 1-oxidoreductase subunit beta 2826577 1045647 PP_2478 Pseudomonas putida KT2440 isoquinoline 1-oxidoreductase subunit beta NP_744626.1 2824385 D 160488 CDS NP_744627.1 26989202 1045648 2826585..2827808 1 NC_002947.3 similar to GP:6648631; identified by sequence similarity; cytochrome c family protein 2827808 1045648 PP_2479 Pseudomonas putida KT2440 cytochrome c family protein NP_744627.1 2826585 D 160488 CDS NP_744628.1 26989203 1045649 2827822..2829030 1 NC_002947.3 similar to SP:P33383, and SP:P33383; identified by sequence similarity; xanthine dehydrogenase accessory factor 2829030 1045649 PP_2480 Pseudomonas putida KT2440 xanthine dehydrogenase accessory factor NP_744628.1 2827822 D 160488 CDS NP_744629.1 26989204 1045650 2829059..2829397 1 NC_002947.3 identified by match to PFAM protein family HMM PF02619; hypothetical protein 2829397 1045650 PP_2481 Pseudomonas putida KT2440 hypothetical protein NP_744629.1 2829059 D 160488 CDS NP_744630.1 26989205 1045651 2829394..2830362 1 NC_002947.3 similar to GB:X64364, GB:L10240, GB:D45131, SP:P35613, PID:1209374, PID:1220307, PID:34449, PID:409357, PID:633069, GB:X06614, GB:S57794, SP:P10276, PID:1335286, PID:35874, PID:36157, and PID:825712; identified by sequence similarity; molybdenum cofactor biosynthesis protein A 2830362 1045651 PP_2482 Pseudomonas putida KT2440 molybdenum cofactor biosynthesis protein A NP_744630.1 2829394 D 160488 CDS NP_744631.1 26989206 1045652 complement(2830340..2830939) 1 NC_002947.3 similar to GP:6273649; identified by sequence similarity; hypothetical protein 2830939 1045652 PP_2483 Pseudomonas putida KT2440 hypothetical protein NP_744631.1 2830340 R 160488 CDS NP_744632.1 26989207 1045653 complement(2831222..2831527) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01022; ArsR family transcriptional regulator 2831527 1045653 PP_2484 Pseudomonas putida KT2440 ArsR family transcriptional regulator NP_744632.1 2831222 R 160488 CDS NP_744633.1 26989208 1045654 complement(2831666..2832649) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00296; hypothetical protein 2832649 1045654 PP_2485 Pseudomonas putida KT2440 hypothetical protein NP_744633.1 2831666 R 160488 CDS NP_744634.1 26989209 1045655 complement(2832716..2833840) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00724; Oye family NADH-dependent flavin oxidoreductase 2833840 1045655 PP_2486 Pseudomonas putida KT2440 Oye family NADH-dependent flavin oxidoreductase NP_744634.1 2832716 R 160488 CDS NP_744635.1 26989210 1045656 complement(2833903..2835414) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01722; aldehyde dehydrogenase 2835414 1045656 PP_2487 Pseudomonas putida KT2440 aldehyde dehydrogenase NP_744635.1 2833903 R 160488 CDS NP_744636.1 26989211 1045657 complement(2835654..2837045) 1 NC_002947.3 similar to GB:L04309, SP:Q07567, and PID:310375; identified by sequence similarity; succinic-semialdehyde dehydrogenase 2837045 1045657 PP_2488 Pseudomonas putida KT2440 succinic-semialdehyde dehydrogenase NP_744636.1 2835654 R 160488 CDS NP_744637.1 26989212 1045658 complement(2837228..2838328) 1 NC_002947.3 similar to GP:6049281, and GP:6049281; identified by sequence similarity; xenobiotic reductase 2838328 1045658 PP_2489 Pseudomonas putida KT2440 xenobiotic reductase NP_744637.1 2837228 R 160488 CDS NP_744638.1 26989213 1045659 complement(2838695..2839519) 1 NC_002947.3 similar to GP:11061573; identified by sequence similarity; nitroreductase 2839519 1045659 PP_2490 Pseudomonas putida KT2440 nitroreductase NP_744638.1 2838695 R 160488 CDS NP_744639.1 26989214 1045660 complement(2839901..2840578) 1 NC_002947.3 similar to GP:5002553; identified by sequence similarity; ThiJ/PfpI family protein 2840578 1045660 PP_2491 Pseudomonas putida KT2440 ThiJ/PfpI family protein NP_744639.1 2839901 R 160488 CDS NP_744640.1 26989215 1045661 complement(2840661..2841818) 1 NC_002947.3 similar to GP:4378173; identified by sequence similarity; butanol dehydrogenase, NADH-dependent 2841818 1045661 PP_2492 Pseudomonas putida KT2440 butanol dehydrogenase, NADH-dependent NP_744640.1 2840661 R 160488 CDS NP_744641.1 26989216 1045662 complement(2842070..2842618) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00608; RadC family protein 2842618 1045662 PP_2493 Pseudomonas putida KT2440 RadC family protein NP_744641.1 2842070 R 160488 CDS NP_744642.1 26989217 1045688 complement(2842590..2843591) 1 NC_002947.3 hypothetical protein 2843591 1045688 PP_2494 Pseudomonas putida KT2440 hypothetical protein NP_744642.1 2842590 R 160488 CDS NP_744643.1 26989218 1045694 complement(2843633..2844637) 1 NC_002947.3 similar to GP:5823649, and GP:5823649; identified by sequence similarity; hypothetical protein 2844637 1045694 PP_2495 Pseudomonas putida KT2440 hypothetical protein NP_744643.1 2843633 R 160488 CDS NP_744644.1 26989219 1045695 complement(2844717..2845745) 1 NC_002947.3 hypothetical protein 2845745 1045695 PP_2496 Pseudomonas putida KT2440 hypothetical protein NP_744644.1 2844717 R 160488 CDS NP_744645.1 26989220 1045708 complement(2845783..2846112) 1 NC_002947.3 hypothetical protein 2846112 1045708 PP_2497 Pseudomonas putida KT2440 hypothetical protein NP_744645.1 2845783 R 160488 CDS NP_744646.1 26989221 1045710 2846317..2846562 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01552; hypothetical protein 2846562 1045710 PP_2498 Pseudomonas putida KT2440 hypothetical protein NP_744646.1 2846317 D 160488 CDS NP_744647.1 26989222 1045716 2846687..2846959 1 NC_002947.3 hypothetical protein 2846959 1045716 PP_2499 Pseudomonas putida KT2440 hypothetical protein NP_744647.1 2846687 D 160488 CDS NP_744648.1 26989223 1045725 2846947..2847240 1 NC_002947.3 hypothetical protein 2847240 1045725 PP_2500 Pseudomonas putida KT2440 hypothetical protein NP_744648.1 2846947 D 160488 CDS NP_744649.1 26989224 1045727 complement(2847234..2848643) 1 NC_002947.3 similar to PIR:A42465; identified by sequence similarity; phage integrase 2848643 1045727 PP_2501 Pseudomonas putida KT2440 phage integrase NP_744649.1 2847234 R 160488 CDS NP_744650.1 26989225 1045728 complement(2849166..2850092) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 2850092 1045728 PP_2502 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744650.1 2849166 R 160488 CDS NP_744651.1 26989226 1045729 2850206..2850937 1 NC_002947.3 similar to GP:10175111; identified by sequence similarity; 3-oxoacyl-ACP reductase 2850937 1045729 PP_2503 Pseudomonas putida KT2440 3-oxoacyl-ACP reductase NP_744651.1 2850206 D 160488 CDS NP_744652.1 26989227 1045731 2851007..2851216 1 NC_002947.3 identified by match to PFAM protein family HMM PF01361; 4-oxalocrotonate tautomerase 2851216 dmpI 1045731 dmpI Pseudomonas putida KT2440 4-oxalocrotonate tautomerase NP_744652.1 2851007 D 160488 CDS NP_744653.1 26989228 1045733 complement(2852291..2853328) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00990; GAF domain/GGDEF domain-containing protein 2853328 1045733 PP_2505 Pseudomonas putida KT2440 GAF domain/GGDEF domain-containing protein NP_744653.1 2852291 R 160488 CDS NP_744654.1 26989229 1045735 2853646..2854185 1 NC_002947.3 hypothetical protein 2854185 1045735 PP_2506 Pseudomonas putida KT2440 hypothetical protein NP_744654.1 2853646 D 160488 CDS NP_744655.1 26989230 1045736 2854231..2854947 1 NC_002947.3 identified by match to PFAM protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 2854947 1045736 PP_2507 Pseudomonas putida KT2440 short chain dehydrogenase/reductase oxidoreductase NP_744655.1 2854231 D 160488 CDS NP_744656.1 26989231 1045737 2856131..2856340 1 NC_002947.3 hypothetical protein 2856340 1045737 PP_2508 Pseudomonas putida KT2440 hypothetical protein NP_744656.1 2856131 D 160488 CDS NP_744657.1 26989232 1045744 complement(2856564..2856728) 1 NC_002947.3 similar to GP:9187583; identified by sequence similarity; hypothetical protein 2856728 1045744 PP_2509 Pseudomonas putida KT2440 hypothetical protein NP_744657.1 2856564 R 160488 CDS NP_744658.1 26989233 1045747 complement(2858387..2858641) 1 NC_002947.3 hypothetical protein 2858641 1045747 PP_2510 Pseudomonas putida KT2440 hypothetical protein NP_744658.1 2858387 R 160488 CDS NP_744659.1 26989234 1045748 2858767..2859180 1 NC_002947.3 similar to GB:X15786, SP:P07949, PID:36009, GB:X15786, SP:P07949, and PID:36009; identified by sequence similarity; hypothetical protein 2859180 1045748 PP_2511 Pseudomonas putida KT2440 hypothetical protein NP_744659.1 2858767 D 160488 CDS NP_744660.1 26989235 1045754 2859165..2859725 1 NC_002947.3 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 2859725 folE 1045754 folE Pseudomonas putida KT2440 GTP cyclohydrolase I NP_744660.1 2859165 D 160488 CDS NP_744661.1 26989236 1045756 complement(2860243..2861328) 1 NC_002947.3 similar to GP:7573255, SP:P38487, PID:500611, and PID:840668; identified by sequence similarity; hypothetical protein 2861328 1045756 PP_2513 Pseudomonas putida KT2440 hypothetical protein NP_744661.1 2860243 R 160488 CDS NP_744662.1 26989237 1045759 complement(2861331..2862047) 1 NC_002947.3 similar to GP:7573254; identified by sequence similarity; hypothetical protein 2862047 1045759 PP_2514 Pseudomonas putida KT2440 hypothetical protein NP_744662.1 2861331 R 160488 CDS NP_744663.1 26989238 1045763 complement(2862044..2862820) 1 NC_002947.3 similar to GP:15074698; identified by sequence similarity; hypothetical protein 2862820 1045763 PP_2515 Pseudomonas putida KT2440 hypothetical protein NP_744663.1 2862044 R 160488 CDS NP_744664.1 26989239 1045766 2862938..2864131 1 NC_002947.3 similar to GP:7573253; identified by sequence similarity; LysR family transcriptional regulator 2864131 1045766 PP_2516 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744664.1 2862938 D 160488 CDS NP_744665.1 26989240 1045767 complement(2864147..2865379) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03573; BenF-like porin 2865379 1045767 PP_2517 Pseudomonas putida KT2440 BenF-like porin NP_744665.1 2864147 R 160488 CDS NP_744666.2 161378130 1045771 complement(2865511..2866773) 1 NC_002947.3 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase 2866773 1045771 PP_2518 Pseudomonas putida KT2440 protocatechuate 4,5-dioxygenase NP_744666.2 2865511 R 160488 CDS NP_744667.1 26989242 1045774 2868342..2868458 1 NC_002947.3 hypothetical protein 2868458 1045774 PP_2520 Pseudomonas putida KT2440 hypothetical protein NP_744667.1 2868342 D 160488 CDS NP_744668.1 26989243 1045780 2869389..2870690 1 NC_002947.3 identified by match to PFAM protein family HMM PF01609; ISPpu8, transposase 2870690 1045780 PP_2522 Pseudomonas putida KT2440 ISPpu8, transposase NP_744668.1 2869389 D 160488 CDS NP_744669.1 26989244 1045784 2871220..2871876 1 NC_002947.3 similar to GB:S61233, PID:385925, and GB:AE000666; identified by sequence similarity; HD domain-containing protein 2871876 1045784 PP_2524 Pseudomonas putida KT2440 HD domain-containing protein NP_744669.1 2871220 D 160488 CDS NP_744670.1 26989245 1045785 complement(2871908..2873071) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02463; hypothetical protein 2873071 1045785 PP_2525 Pseudomonas putida KT2440 hypothetical protein NP_744670.1 2871908 R 160488 CDS NP_744671.1 26989246 1045787 2873218..2873691 1 NC_002947.3 hypothetical protein 2873691 1045787 PP_2526 Pseudomonas putida KT2440 hypothetical protein NP_744671.1 2873218 D 160488 CDS NP_744672.1 26989247 1045796 complement(2873773..2874654) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04284; hypothetical protein 2874654 1045796 PP_2527 Pseudomonas putida KT2440 hypothetical protein NP_744672.1 2873773 R 160488 CDS NP_744673.1 26989248 1045789 complement(2874602..2875879) 1 NC_002947.3 catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase 2875879 metY 1045789 metY Pseudomonas putida KT2440 O-acetylhomoserine aminocarboxypropyltransferase NP_744673.1 2874602 R 160488 CDS NP_744674.1 26989249 1045798 2876004..2876261 1 NC_002947.3 hypothetical protein 2876261 1045798 PP_2529 Pseudomonas putida KT2440 hypothetical protein NP_744674.1 2876004 D 160488 CDS NP_744675.1 26989250 1045800 complement(2876100..2876357) 1 NC_002947.3 hypothetical protein 2876357 1045800 PP_2530 Pseudomonas putida KT2440 hypothetical protein NP_744675.1 2876100 R 160488 CDS NP_744676.1 26989251 1045801 complement(2876376..2877371) 1 NC_002947.3 similar to GP:4902474; identified by sequence similarity; 5'-nucleotidase 2877371 1045801 PP_2531 Pseudomonas putida KT2440 5'-nucleotidase NP_744676.1 2876376 R 160488 CDS NP_744677.1 26989252 1045809 2877511..2877999 1 NC_002947.3 hypothetical protein 2877999 1045809 PP_2532 Pseudomonas putida KT2440 hypothetical protein NP_744677.1 2877511 D 160488 CDS NP_744678.1 26989253 1045811 complement(2878007..2879002) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00389; D-isomer specific 2-hydroxyacid dehydrogenase 2879002 1045811 PP_2533 Pseudomonas putida KT2440 D-isomer specific 2-hydroxyacid dehydrogenase NP_744678.1 2878007 R 160488 CDS NP_744679.1 26989254 1045812 complement(2879162..2880061) 1 NC_002947.3 similar to GP:9949236; identified by sequence similarity; LysR family transcriptional regulator 2880061 1045812 PP_2534 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744679.1 2879162 R 160488 CDS NP_744680.1 26989255 1045813 2880156..2881331 1 NC_002947.3 similar to SP:P25156, GB:X59507, and PID:395159; identified by sequence similarity; major facilitator superfamily protein 2881331 1045813 PP_2535 Pseudomonas putida KT2440 major facilitator superfamily protein NP_744680.1 2880156 D 160488 CDS NP_744681.1 26989256 1045815 complement(2881385..2882008) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02798; glutathione S-transferase 2882008 1045815 PP_2536 Pseudomonas putida KT2440 glutathione S-transferase NP_744681.1 2881385 R 160488 CDS NP_744682.1 26989257 1045817 2882201..2882509 1 NC_002947.3 hypothetical protein 2882509 1045817 PP_2537 Pseudomonas putida KT2440 hypothetical protein NP_744682.1 2882201 D 160488 CDS NP_744683.1 26989258 1045818 2882589..2883311 1 NC_002947.3 hypothetical protein 2883311 1045818 PP_2538 Pseudomonas putida KT2440 hypothetical protein NP_744683.1 2882589 D 160488 CDS NP_744684.1 26989259 1045821 2883438..2884364 1 NC_002947.3 similar to GP:9948229; identified by sequence similarity; LysR family transcriptional regulator 2884364 1045821 PP_2539 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744684.1 2883438 D 160488 CDS NP_744685.1 26989260 1045822 2884533..2885309 1 NC_002947.3 similar to GB:L08822, SP:P37947, PID:142836, and PID:1934840; identified by sequence similarity; short chain dehydrogenase/reductase oxidoreductase 2885309 1045822 PP_2540 Pseudomonas putida KT2440 short chain dehydrogenase/reductase oxidoreductase NP_744685.1 2884533 D 160488 CDS NP_744686.1 26989261 1045823 complement(2885321..2885875) 1 NC_002947.3 similar to GP:6642785; identified by sequence similarity; transcriptional factor-like protein 2885875 1045823 PP_2541 Pseudomonas putida KT2440 transcriptional factor-like protein NP_744686.1 2885321 R 160488 CDS NP_744687.1 26989262 1045824 complement(2887241..2888665) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00155; GntR family transcriptional regulator 2888665 1045824 PP_2542 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_744687.1 2887241 R 160488 CDS NP_744688.1 26989263 1045826 2888990..2890402 1 NC_002947.3 identified by match to PFAM protein family HMM PF04172; amino acid ABC transporter permease 2890402 1045826 PP_2543 Pseudomonas putida KT2440 amino acid ABC transporter permease NP_744688.1 2888990 D 160488 CDS NP_744689.1 26989264 1045827 complement(2890406..2890606) 1 NC_002947.3 hypothetical protein 2890606 1045827 PP_2544 Pseudomonas putida KT2440 hypothetical protein NP_744689.1 2890406 R 160488 CDS NP_744690.1 26989265 1045829 2890658..2891476 1 NC_002947.3 similar to SP:P76145, SP:P02930, GB:X54049, PID:43101, PID:43107, PID:882565, GB:U00096, and PID:1789413; identified by sequence similarity; trans-aconitate 2-methyltransferase 2891476 1045829 PP_2545 Pseudomonas putida KT2440 trans-aconitate 2-methyltransferase NP_744690.1 2890658 D 160488 CDS NP_744691.1 26989266 1045830 complement(2891466..2891837) 1 NC_002947.3 hypothetical protein 2891837 1045830 PP_2546 Pseudomonas putida KT2440 hypothetical protein NP_744691.1 2891466 R 160488 CDS NP_744692.1 26989267 1045832 complement(2891895..2892764) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 2892764 1045832 PP_2547 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744692.1 2891895 R 160488 CDS NP_744693.1 26989268 1045834 2893008..2894324 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00880; major facilitator superfamily transporter 2894324 1045834 PP_2548 Pseudomonas putida KT2440 major facilitator superfamily transporter NP_744693.1 2893008 D 160488 CDS NP_744694.1 26989269 1045838 2894339..2895730 1 NC_002947.3 identified by match to PFAM protein family HMM PF01593; hypothetical protein 2895730 1045838 PP_2549 Pseudomonas putida KT2440 hypothetical protein NP_744694.1 2894339 D 160488 CDS NP_744695.1 26989270 1045845 2895828..2896541 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01033; hypothetical protein 2896541 1045845 PP_2550 Pseudomonas putida KT2440 hypothetical protein NP_744695.1 2895828 D 160488 CDS NP_744696.1 26989271 1045847 2896679..2897623 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 2897623 1045847 PP_2551 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744696.1 2896679 D 160488 CDS NP_744697.1 26989272 1045854 2897773..2899185 1 NC_002947.3 similar to GP:4512701, SP:P10028, SP:P11904, GB:X04268, PID:43002, and PID:452844; identified by sequence similarity; aromatic-L-amino-acid decarboxylase 2899185 1045854 PP_2552 Pseudomonas putida KT2440 aromatic-L-amino-acid decarboxylase NP_744697.1 2897773 D 160488 CDS NP_744698.1 26989273 1045856 complement(2899253..2900626) 1 NC_002947.3 similar to GP:11071219; identified by sequence similarity; major facilitator family transporter 2900626 1045856 PP_2553 Pseudomonas putida KT2440 major facilitator family transporter NP_744698.1 2899253 R 160488 CDS NP_744699.1 26989274 1045859 2900916..2902823 1 NC_002947.3 similar to GB:M34065, SP:P30307, and PID:180176; identified by sequence similarity; 4-hydroxyphenylpyruvate dioxygenase 2902823 1045859 PP_2554 Pseudomonas putida KT2440 4-hydroxyphenylpyruvate dioxygenase NP_744699.1 2900916 D 160488 CDS NP_744700.1 26989275 1045906 complement(2902892..2903572) 1 NC_002947.3 similar to GB:M94964, PID:531810, and SP:P45602; identified by sequence similarity; type 12 methyltransferase 2903572 1045906 PP_2555 Pseudomonas putida KT2440 type 12 methyltransferase NP_744700.1 2902892 R 160488 CDS NP_744701.1 26989276 1045910 complement(2903572..2904924) 1 NC_002947.3 similar to GP:6655031; identified by sequence similarity; chromate transporter 2904924 1045910 PP_2556 Pseudomonas putida KT2440 chromate transporter NP_744701.1 2903572 R 160488 CDS NP_744702.1 26989277 1045914 complement(2904942..2905805) 1 NC_002947.3 similar to GP:9946743; identified by sequence similarity; PAS/PAC sensor-containing diguanylate cyclase 2905805 1045914 PP_2557 Pseudomonas putida KT2440 PAS/PAC sensor-containing diguanylate cyclase NP_744702.1 2904942 R 160488 CDS NP_744703.1 26989278 1045915 complement(2906021..2907379) 1 NC_002947.3 similar to GP:6624217, and GP:6624217; identified by sequence similarity; TolC family type I secretion outer membrane protein 2907379 1045915 PP_2558 Pseudomonas putida KT2440 TolC family type I secretion outer membrane protein NP_744703.1 2906021 R 160488 CDS NP_744704.1 26989279 1045922 complement(2907351..2908691) 1 NC_002947.3 similar to GB:S71018, and SP:P45877; identified by sequence similarity; HlyD family type I secretion membrane fusion protein 2908691 hasE 1045922 hasE Pseudomonas putida KT2440 HlyD family type I secretion membrane fusion protein NP_744704.1 2907351 R 160488 CDS NP_744705.1 26989280 1045926 complement(2908698..2910434) 1 NC_002947.3 similar to GP:4826416; identified by sequence similarity; type I secretion system ATPase 2910434 1045926 PP_2560 Pseudomonas putida KT2440 type I secretion system ATPase NP_744705.1 2908698 R 160488 CDS NP_744706.1 26989281 1045927 2910945..2921804 1 NC_002947.3 identified by match to PFAM protein family HMM PF00353; heme peroxidase 2921804 1045927 PP_2561 Pseudomonas putida KT2440 heme peroxidase NP_744706.1 2910945 D 160488 CDS NP_744707.1 26989282 1045928 2921966..2922451 1 NC_002947.3 identified by match to PFAM protein family HMM PF00857; hypothetical protein 2922451 1045928 PP_2562 Pseudomonas putida KT2440 hypothetical protein NP_744707.1 2921966 D 160488 CDS NP_744708.1 26989283 1045929 complement(2922478..2925249) 1 NC_002947.3 similar to GP:2052249; identified by sequence similarity; antibiotic biosynthesis protein 2925249 1045929 PP_2563 Pseudomonas putida KT2440 antibiotic biosynthesis protein NP_744708.1 2922478 R 160488 CDS NP_744709.1 26989284 1045932 complement(2925814..2926512) 1 NC_002947.3 similar to GP:5354199; identified by sequence similarity; pirin 2926512 1045932 PP_2564 Pseudomonas putida KT2440 pirin NP_744709.1 2925814 R 160488 CDS NP_744710.1 26989285 1045933 2927058..2929202 1 NC_002947.3 identified by match to PFAM protein family HMM PF00580; UvrD/REP helicase 2929202 1045933 PP_2565 Pseudomonas putida KT2440 UvrD/REP helicase NP_744710.1 2927058 D 160488 CDS NP_744711.1 26989286 1045935 complement(2929209..2934281) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00560; hypothetical protein 2934281 1045935 PP_2566 Pseudomonas putida KT2440 hypothetical protein NP_744711.1 2929209 R 160488 CDS NP_744712.1 26989287 1045936 2934281..2935207 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01738; alpha/beta hydrolase 2935207 1045936 PP_2567 Pseudomonas putida KT2440 alpha/beta hydrolase NP_744712.1 2934281 D 160488 CDS NP_744713.1 26989288 1045938 2935283..2935702 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00068; glyoxalase/bleomycin resistance protein/dioxygenase 2935702 1045938 PP_2568 Pseudomonas putida KT2440 glyoxalase/bleomycin resistance protein/dioxygenase NP_744713.1 2935283 D 160488 CDS NP_744714.1 26989289 1045939 2935964..2937640 1 NC_002947.3 similar to GB:U10554, GB:U09210, PID:507744, and PID:769848; identified by sequence similarity; major facilitator superfamily transporter 2937640 1045939 PP_2569 Pseudomonas putida KT2440 major facilitator superfamily transporter NP_744714.1 2935964 D 160488 CDS NP_744715.1 26989290 1045941 complement(2937723..2939051) 1 NC_002947.3 similar to GP:6723233; identified by sequence similarity; ISPpu9, transposase 2939051 1045941 PP_2570 Pseudomonas putida KT2440 ISPpu9, transposase NP_744715.1 2937723 R 160488 CDS NP_744716.1 26989291 1045942 complement(2939383..2939490) 1 NC_002947.3 hypothetical protein 2939490 1045942 PP_2571 Pseudomonas putida KT2440 hypothetical protein NP_744716.1 2939383 R 160488 CDS NP_744717.1 26989292 1045943 complement(2939491..2940138) 1 NC_002947.3 hypothetical protein 2940138 1045943 PP_2572 Pseudomonas putida KT2440 hypothetical protein NP_744717.1 2939491 R 160488 CDS NP_744718.1 26989293 1045944 complement(2940102..2940488) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00903; glyoxalase/bleomycin resistance protein/dioxygenase 2940488 1045944 PP_2573 Pseudomonas putida KT2440 glyoxalase/bleomycin resistance protein/dioxygenase NP_744718.1 2940102 R 160488 CDS NP_744719.1 26989294 1045945 2940766..2941677 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 2941677 1045945 PP_2574 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744719.1 2940766 D 160488 CDS NP_744720.1 26989295 1045948 complement(2941723..2942196) 1 NC_002947.3 hypothetical protein 2942196 1045948 PP_2575 Pseudomonas putida KT2440 hypothetical protein NP_744720.1 2941723 R 160488 CDS NP_744721.1 26989296 1045950 2943569..2945209 1 NC_002947.3 similar to GB:L02321, SP:P46439, and PID:468260; identified by sequence similarity; hypothetical protein 2945209 1045950 PP_2577 Pseudomonas putida KT2440 hypothetical protein NP_744721.1 2943569 D 160488 CDS NP_744722.1 26989297 1045951 2945221..2945751 1 NC_002947.3 similar to GP:17427611; identified by sequence similarity; hypothetical protein 2945751 1045951 PP_2578 Pseudomonas putida KT2440 hypothetical protein NP_744722.1 2945221 D 160488 CDS NP_744723.1 26989298 1045954 complement(2945764..2947518) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02418; hypothetical protein 2947518 1045954 PP_2579 Pseudomonas putida KT2440 hypothetical protein NP_744723.1 2945764 R 160488 CDS NP_744724.1 26989299 1045955 2947730..2947885 1 NC_002947.3 hypothetical protein 2947885 1045955 PP_2580 Pseudomonas putida KT2440 hypothetical protein NP_744724.1 2947730 D 160488 CDS NP_744725.1 26989300 1045960 complement(2948115..2948462) 1 NC_002947.3 hypothetical protein 2948462 1045960 PP_2581 Pseudomonas putida KT2440 hypothetical protein NP_744725.1 2948115 R 160488 CDS NP_744726.1 26989301 1045961 complement(2948488..2949078) 1 NC_002947.3 similar to GP:8163802, and GP:8163802; identified by sequence similarity; heme oxygenase 2949078 1045961 PP_2582 Pseudomonas putida KT2440 heme oxygenase NP_744726.1 2948488 R 160488 CDS NP_744727.1 26989302 1045964 2949172..2949732 1 NC_002947.3 similar to GB:X63763, and PID:47586; identified by sequence similarity; acetyltransferase 2949732 1045964 PP_2583 Pseudomonas putida KT2440 acetyltransferase NP_744727.1 2949172 D 160488 CDS NP_744728.1 26989303 1045965 complement(2949845..2951242) 1 NC_002947.3 catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.; hydroxydechloroatrazine ethylaminohydrolase 2951242 1045965 PP_2584 Pseudomonas putida KT2440 hydroxydechloroatrazine ethylaminohydrolase NP_744728.1 2949845 R 160488 CDS NP_744729.1 26989304 1045967 complement(2951379..2952959) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01722; aldehyde dehydrogenase 2952959 1045967 PP_2585 Pseudomonas putida KT2440 aldehyde dehydrogenase NP_744729.1 2951379 R 160488 CDS NP_744730.1 26989305 1045973 complement(2953112..2954524) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03647; amino acid ABC transporter permease 2954524 1045973 PP_2586 Pseudomonas putida KT2440 amino acid ABC transporter permease NP_744730.1 2953112 R 160488 CDS NP_744731.1 26989306 1045974 2954775..2955617 1 NC_002947.3 identified by match to PFAM protein family HMM PF00196; LuxR family transcriptional regulator 2955617 1045974 PP_2587 Pseudomonas putida KT2440 LuxR family transcriptional regulator NP_744731.1 2954775 D 160488 CDS NP_744732.1 26989307 1045975 2955660..2957042 1 NC_002947.3 similar to SP:P32724, GB:X58406, PID:581361, PID:2094830, and GB:AL123456; identified by sequence similarity; aminotransferase 2957042 1045975 PP_2588 Pseudomonas putida KT2440 aminotransferase NP_744732.1 2955660 D 160488 CDS NP_744733.1 26989308 1045976 2957238..2958731 1 NC_002947.3 similar to GP:9946056; identified by sequence similarity; aldehyde dehydrogenase 2958731 1045976 PP_2589 Pseudomonas putida KT2440 aldehyde dehydrogenase NP_744733.1 2957238 D 160488 CDS NP_744734.1 26989309 1045977 complement(2958873..2961188) 1 NC_002947.3 similar to GB:M16038, SP:P07948, PID:307144, GB:M16038, SP:P07948, and PID:307144; identified by sequence similarity; outer membrane ferric siderophore receptor 2961188 1045977 PP_2590 Pseudomonas putida KT2440 outer membrane ferric siderophore receptor NP_744734.1 2958873 R 160488 CDS NP_744735.1 26989310 1045978 complement(2961228..2962250) 1 NC_002947.3 similar to GB:X58536, GB:M12679, GB:M26432, GB:M28171, GB:M84386, GB:U06487, GB:U07230, GB:D31817, GB:Z47377, GB:L54059, GB:X96582, GB:U60422, SP:P01889, SP:P04222, SP:P10321, SP:P30484, SP:P30499, SP:P30500, SP:P30501, SP:P30502, SP:P30503, SP:P30504, SP:P30505, SP:P30506, SP:P30507, SP:P30508, SP:P30509, SP:P30510, SP:Q07000, GB:Y09156, PID:1448997, PID:1561555, PID:1857768, PID:2245531, PID:2394348, PID:2394350, PID:32235, PID:386891, PID:472312, PID:474336, PID:488362, PID:495038, PID:495040, PID:505388, PID:520835, PID:531198, PID:553532, PID:553541, PID:555682, PID:557643, PID:576473, PID:576477, PID:576479, PID:599786, PID:599788, PID:642239, PID:669132, PID:695256, PID:695258, PID:825674, and PID:951150; identified by sequence similarity; ferric siderophore ABC transporter substrate-binding protein 2962250 1045978 PP_2591 Pseudomonas putida KT2440 ferric siderophore ABC transporter substrate-binding protein NP_744735.1 2961228 R 160488 CDS NP_744736.1 26989311 1045979 complement(2962214..2962990) 1 NC_002947.3 similar to GP:10173642, GB:X55150, GB:X55150, GB:L05407, GB:L05408, GB:L05409, GB:L05410, GB:L05411, GB:L05412, GB:L05413, GB:L05414, GB:L05415, GB:L05416, GB:L05417, GB:L05418, GB:L05419, GB:L05420, GB:L05421, GB:L05422, GB:L05424, GB:X66733, GB:M83327, GB:L05423, GB:S66400, GB:S66400, GB:S66400, GB:M59040, GB:M69215, GB:D28477, GB:M83324, GB:M83325, GB:M83326, GB:M83328, GB:X55938, GB:S72928, GB:X56794, GB:X62739, SP:P16070, SP:P22511, PID:950416, PID:950418, PID:950420, and PID:950422; identified by sequence similarity; ferric siderophore ABC transporter ATP-binding protein 2962990 1045979 PP_2592 Pseudomonas putida KT2440 ferric siderophore ABC transporter ATP-binding protein NP_744736.1 2962214 R 160488 CDS NP_744737.1 26989312 1045980 complement(2962987..2963928) 1 NC_002947.3 similar to GB:M20471, SP:P09496, PID:179397, GB:M20471, SP:P09496, and PID:179397; identified by sequence similarity; ferric siderophore ABC transporter permease 2963928 1045980 PP_2593 Pseudomonas putida KT2440 ferric siderophore ABC transporter permease NP_744737.1 2962987 R 160488 CDS NP_744738.1 26989313 1045981 complement(2963925..2964866) 1 NC_002947.3 similar to GB:M15881, SP:P07911, PID:340164, PID:340166, GB:M15881, SP:P07911, PID:340164, and PID:340166; identified by sequence similarity; ferric siderophore ABC transporter permease 2964866 1045981 PP_2594 Pseudomonas putida KT2440 ferric siderophore ABC transporter permease NP_744738.1 2963925 R 160488 CDS NP_744739.1 26989314 1045982 complement(2964866..2966671) 1 NC_002947.3 similar to GP:6714810; identified by sequence similarity; ABC transporter ATP-binding protein/permease 2966671 1045982 PP_2595 Pseudomonas putida KT2440 ABC transporter ATP-binding protein/permease NP_744739.1 2964866 R 160488 CDS NP_744740.1 26989315 1045983 complement(2966617..2968410) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00960; ABC transporter ATP-binding protein/permease 2968410 1045983 PP_2596 Pseudomonas putida KT2440 ABC transporter ATP-binding protein/permease NP_744740.1 2966617 R 160488 CDS NP_744741.1 26989316 1045984 2968463..2969131 1 NC_002947.3 identified by match to PFAM protein family HMM PF00440; hypothetical protein 2969131 1045984 PP_2597 Pseudomonas putida KT2440 hypothetical protein NP_744741.1 2968463 D 160488 CDS NP_744742.1 26989317 1045985 2969337..2969684 1 NC_002947.3 hypothetical protein 2969684 1045985 PP_2598 Pseudomonas putida KT2440 hypothetical protein NP_744742.1 2969337 D 160488 CDS NP_744743.1 26989318 1045986 2969659..2972049 1 NC_002947.3 identified by match to PFAM protein family HMM PF02743; metal dependent phosphohydrolase 2972049 1045986 PP_2599 Pseudomonas putida KT2440 metal dependent phosphohydrolase NP_744743.1 2969659 D 160488 CDS NP_744744.1 26989319 1045988 complement(2972158..2973870) 1 NC_002947.3 proposed role in polysaccahride synthesis; FAD-binding dehydrogenase 2973870 1045988 PP_2600 Pseudomonas putida KT2440 FAD-binding dehydrogenase NP_744744.1 2972158 R 160488 CDS NP_744745.1 26989320 1045989 2974065..2974841 1 NC_002947.3 identified by match to PFAM protein family HMM PF01614; IclR family transcriptional regulator 2974841 1045989 PP_2601 Pseudomonas putida KT2440 IclR family transcriptional regulator NP_744745.1 2974065 D 160488 CDS NP_744746.1 26989321 1045990 2974980..2976032 1 NC_002947.3 identified by match to PFAM protein family HMM PF02894; oxidoreductase domain-containing protein 2976032 1045990 PP_2602 Pseudomonas putida KT2440 oxidoreductase domain-containing protein NP_744746.1 2974980 D 160488 CDS NP_744747.1 26989322 1045991 2976062..2976877 1 NC_002947.3 xylose isomerase 2976877 1045991 PP_2603 Pseudomonas putida KT2440 xylose isomerase NP_744747.1 2976062 D 160488 CDS NP_744748.1 26989323 1045992 complement(2977026..2978468) 1 NC_002947.3 similar to GB:M13267, GB:X02317, GB:K00065, GB:X01662, GB:X01780, GB:X01781, GB:X01782, GB:X01783, GB:X01784, GB:X81859, GB:X95228, SP:P00441, PID:1237406, PID:1237407, PID:1335314, PID:1335315, PID:1335317, PID:1335318, PID:338276, PID:36535, PID:36542, and PID:939773; identified by sequence similarity; major facilitator family transporter 2978468 1045992 PP_2604 Pseudomonas putida KT2440 major facilitator family transporter NP_744748.1 2977026 R 160488 CDS NP_744749.1 26989324 1045993 complement(2978593..2980281) 1 NC_002947.3 similar to GP:9948269; identified by sequence similarity; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 2980281 1045993 PP_2605 Pseudomonas putida KT2440 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein NP_744749.1 2978593 R 160488 CDS NP_744750.1 26989325 1045994 complement(2980323..2980643) 1 NC_002947.3 similar to GP:5912096, and GP:7023833; identified by sequence similarity; NIPSNAP family containing protein 2980643 1045994 PP_2606 Pseudomonas putida KT2440 NIPSNAP family containing protein NP_744750.1 2980323 R 160488 CDS NP_744751.1 26989326 1045995 complement(2980628..2982361) 1 NC_002947.3 similar to GP:9948269; identified by sequence similarity; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 2982361 1045995 PP_2607 Pseudomonas putida KT2440 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein NP_744751.1 2980628 R 160488 CDS NP_744752.1 26989327 1045996 complement(2982366..2983175) 1 NC_002947.3 similar to GB:X57766, SP:P24347, PID:456257, and PID:987949; identified by sequence similarity; shikimate dehydrogenase 2983175 1045996 PP_2608 Pseudomonas putida KT2440 shikimate dehydrogenase NP_744752.1 2982366 R 160488 CDS NP_744753.1 26989328 1045997 2983332..2984102 1 NC_002947.3 similar to GP:6646870; identified by sequence similarity; IclR family transcriptional regulator 2984102 1045997 PP_2609 Pseudomonas putida KT2440 IclR family transcriptional regulator NP_744753.1 2983332 D 160488 CDS NP_744754.1 26989329 1045998 complement(2984253..2984510) 1 NC_002947.3 similar to GP:15158890; identified by sequence similarity; hypothetical protein 2984510 1045998 PP_2610 Pseudomonas putida KT2440 hypothetical protein NP_744754.1 2984253 R 160488 CDS NP_744755.1 26989330 1045999 complement(2984507..2985466) 1 NC_002947.3 hypothetical protein 2985466 1045999 PP_2611 Pseudomonas putida KT2440 hypothetical protein NP_744755.1 2984507 R 160488 CDS NP_744756.1 26989331 1046001 complement(2985405..2988395) 1 NC_002947.3 hypothetical protein 2988395 1046001 PP_2612 Pseudomonas putida KT2440 hypothetical protein NP_744756.1 2985405 R 160488 CDS NP_744757.1 26989332 1046002 complement(2988388..2989338) 1 NC_002947.3 hypothetical protein 2989338 1046002 PP_2613 Pseudomonas putida KT2440 hypothetical protein NP_744757.1 2988388 R 160488 CDS NP_744758.1 26989333 1046003 complement(2989308..2991476) 1 NC_002947.3 similar to GP:2920640; identified by sequence similarity; vgrG protein 2991476 vgrG-1 1046003 vgrG-1 Pseudomonas putida KT2440 vgrG protein NP_744758.1 2989308 R 160488 CDS NP_744759.1 26989334 1046004 complement(2991551..2992066) 1 NC_002947.3 similar to GP:2920641; identified by sequence similarity; hcp protein 2992066 hcp-1 1046004 hcp-1 Pseudomonas putida KT2440 hcp protein NP_744759.1 2991551 R 160488 CDS NP_744760.1 26989335 1046005 complement(2992200..2993069) 1 NC_002947.3 hypothetical protein 2993069 1046005 PP_2616 Pseudomonas putida KT2440 hypothetical protein NP_744760.1 2992200 R 160488 CDS NP_744761.1 26989336 1046006 complement(2993071..2994408) 1 NC_002947.3 hypothetical protein 2994408 1046006 PP_2617 Pseudomonas putida KT2440 hypothetical protein NP_744761.1 2993071 R 160488 CDS NP_744762.1 26989337 1046007 complement(2994464..2995261) 1 NC_002947.3 hypothetical protein 2995261 1046007 PP_2618 Pseudomonas putida KT2440 hypothetical protein NP_744762.1 2994464 R 160488 CDS NP_744763.1 26989338 1046008 complement(2995258..2995827) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00498; FHA domain-containing protein 2995827 1046008 PP_2619 Pseudomonas putida KT2440 FHA domain-containing protein NP_744763.1 2995258 R 160488 CDS NP_744764.1 26989339 1046009 complement(2995824..2996840) 1 NC_002947.3 hypothetical protein 2996840 1046009 PP_2620 Pseudomonas putida KT2440 hypothetical protein NP_744764.1 2995824 R 160488 CDS NP_744765.1 26989340 1046010 complement(2996804..2998570) 1 NC_002947.3 hypothetical protein 2998570 1046010 PP_2621 Pseudomonas putida KT2440 hypothetical protein NP_744765.1 2996804 R 160488 CDS NP_744766.1 26989341 1046011 complement(2998574..2998984) 1 NC_002947.3 hypothetical protein 2998984 1046011 PP_2622 Pseudomonas putida KT2440 hypothetical protein NP_744766.1 2998574 R 160488 CDS NP_744767.1 26989342 1046012 complement(2998981..3000471) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00595; hypothetical protein 3000471 1046012 PP_2623 Pseudomonas putida KT2440 hypothetical protein NP_744767.1 2998981 R 160488 CDS NP_744768.1 26989343 1046013 complement(3000489..3000992) 1 NC_002947.3 similar to GP:2920642, and GP:2920642; identified by sequence similarity; hypothetical protein 3000992 1046013 PP_2624 Pseudomonas putida KT2440 hypothetical protein NP_744768.1 3000489 R 160488 CDS NP_744769.1 26989344 1046014 3001274..3001969 1 NC_002947.3 hypothetical protein 3001969 1046014 PP_2625 Pseudomonas putida KT2440 hypothetical protein NP_744769.1 3001274 D 160488 CDS NP_744770.1 26989345 1046015 3001957..3003420 1 NC_002947.3 hypothetical protein 3003420 1046015 PP_2626 Pseudomonas putida KT2440 hypothetical protein NP_744770.1 3001957 D 160488 CDS NP_744771.1 26989346 1046016 3003417..3007037 1 NC_002947.3 hypothetical protein 3007037 1046016 PP_2627 Pseudomonas putida KT2440 hypothetical protein NP_744771.1 3003417 D 160488 CDS NP_744772.1 26989347 1046017 complement(3007115..3009091) 1 NC_002947.3 similar to GB:J00128, GB:M58569, GB:M64982, GB:J00127, GB:K02272, GB:M26878, SP:P02671, GB:S82092, PID:182407, PID:182424, PID:182426, PID:182428, PID:458554, and PID:458555; identified by sequence similarity; ABC transporter ATP-binding protein 3009091 1046017 PP_2628 Pseudomonas putida KT2440 ABC transporter ATP-binding protein NP_744772.1 3007115 R 160488 CDS NP_744773.1 26989348 1046018 3009133..3009903 1 NC_002947.3 similar to GB:L10320, GB:D26054, GB:D26055, GB:D26056, GB:U47919, GB:U47918, SP:P09467, PID:1200520, PID:1200522, PID:178349, PID:182311, PID:439226, PID:439228, and PID:439230; identified by sequence similarity; hypothetical protein 3009903 1046018 PP_2629 Pseudomonas putida KT2440 hypothetical protein NP_744773.1 3009133 D 160488 CDS NP_744774.1 26989349 1046019 3009908..3010762 1 NC_002947.3 similar to GB:L10320, GB:D26054, GB:D26055, GB:D26056, GB:U47919, GB:U47918, SP:P09467, PID:1200520, PID:1200522, PID:178349, PID:182311, PID:439226, PID:439228, and PID:439230; identified by sequence similarity; hypothetical protein 3010762 1046019 PP_2630 Pseudomonas putida KT2440 hypothetical protein NP_744774.1 3009908 D 160488 CDS NP_744775.1 26989350 1046021 3010759..3010944 1 NC_002947.3 hypothetical protein 3010944 1046021 PP_2631 Pseudomonas putida KT2440 hypothetical protein NP_744775.1 3010759 D 160488 CDS NP_744776.1 26989351 1046022 3010937..3012550 1 NC_002947.3 hypothetical protein 3012550 1046022 PP_2632 Pseudomonas putida KT2440 hypothetical protein NP_744776.1 3010937 D 160488 CDS NP_744777.1 26989352 1046023 3012547..3012765 1 NC_002947.3 hypothetical protein 3012765 1046023 PP_2633 Pseudomonas putida KT2440 hypothetical protein NP_744777.1 3012547 D 160488 CDS NP_744778.1 26989353 1046024 3012762..3013469 1 NC_002947.3 cellulose synthase 3013469 1046024 PP_2634 Pseudomonas putida KT2440 cellulose synthase NP_744778.1 3012762 D 160488 CDS NP_744779.1 26989354 1046025 3013466..3016075 1 NC_002947.3 polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis; cellulose synthase catalytic subunit 3016075 bcsA 1046025 bcsA Pseudomonas putida KT2440 cellulose synthase catalytic subunit NP_744779.1 3013466 D 160488 CDS NP_744780.1 26989355 1046026 3016075..3018357 1 NC_002947.3 binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein 3018357 1046026 PP_2636 Pseudomonas putida KT2440 cellulose synthase regulator protein NP_744780.1 3016075 D 160488 CDS NP_744781.1 26989356 1046027 3018360..3019472 1 NC_002947.3 catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; endo-1,4-D-glucanase 3019472 1046027 PP_2637 Pseudomonas putida KT2440 endo-1,4-D-glucanase NP_744781.1 3018360 D 160488 CDS NP_744782.1 26989357 1046028 3019460..3022978 1 NC_002947.3 cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA; cellulose synthase subunit BcsC 3022978 1046028 PP_2638 Pseudomonas putida KT2440 cellulose synthase subunit BcsC NP_744782.1 3019460 D 160488 CDS NP_744783.1 26989358 1046029 3023316..3024182 1 NC_002947.3 identified by match to PFAM protein family HMM PF00701; dihydrodipicolinate synthase 3024182 1046029 PP_2639 Pseudomonas putida KT2440 dihydrodipicolinate synthase NP_744783.1 3023316 D 160488 CDS NP_744784.1 26989359 1046031 complement(3024336..3024794) 1 NC_002947.3 similar to GB:M23326, GB:X15261, GB:X13954, PID:1049195, PID:2358067, PID:312412, PID:37046, PID:37048, PID:37298, PID:37324, and PID:540457; identified by sequence similarity; acetyltransferase 3024794 1046031 PP_2640 Pseudomonas putida KT2440 acetyltransferase NP_744784.1 3024336 R 160488 CDS NP_744785.1 26989360 1046032 complement(3024833..3026632) 1 NC_002947.3 similar to SP:P37911, GB:X07469, SP:P08149, GB:M32091, GB:X07468, GB:X07470, GB:X59632, PID:150279, PID:44911, PID:44913, PID:44915, and PID:509155; identified by sequence similarity; (Fe-S)-binding protein 3026632 1046032 PP_2641 Pseudomonas putida KT2440 (Fe-S)-binding protein NP_744785.1 3024833 R 160488 CDS NP_744786.1 26989361 1046034 3026633..3028123 1 NC_002947.3 identified by match to PFAM protein family HMM PF00155; GntR family transcriptional regulator 3028123 1046034 PP_2642 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_744786.1 3026633 D 160488 CDS NP_744787.1 26989362 1046035 3028345..3029997 1 NC_002947.3 similar to GP:9947573; identified by sequence similarity; methyl-accepting chemotaxis sensory transducer 3029997 1046035 PP_2643 Pseudomonas putida KT2440 methyl-accepting chemotaxis sensory transducer NP_744787.1 3028345 D 160488 CDS NP_744788.1 26989363 1046036 3030247..3030393 1 NC_002947.3 hypothetical protein 3030393 1046036 PP_2644 Pseudomonas putida KT2440 hypothetical protein NP_744788.1 3030247 D 160488 CDS NP_744789.1 26989364 1046037 3030691..3033453 1 NC_002947.3 similar to GB:X60459, SP:P17181, PID:1247459, PID:1247461, PID:1567383, PID:1567385, PID:306914, and PID:32672; identified by sequence similarity; magnesium-translocating P-type ATPase 3033453 mgtB 1046037 mgtB Pseudomonas putida KT2440 magnesium-translocating P-type ATPase NP_744789.1 3030691 D 160488 CDS NP_744790.1 26989365 1046039 3033457..3033852 1 NC_002947.3 hypothetical protein 3033852 1046039 PP_2646 Pseudomonas putida KT2440 hypothetical protein NP_744790.1 3033457 D 160488 CDS NP_744791.1 26989366 1046040 complement(3033959..3035185) 1 NC_002947.3 similar to GP:5738822; identified by sequence similarity; major facilitator family transporter 3035185 1046040 PP_2647 Pseudomonas putida KT2440 major facilitator family transporter NP_744791.1 3033959 R 160488 CDS NP_744792.1 26989367 1046042 complement(3035478..3036407) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00582; universal stress protein 3036407 1046042 PP_2648 Pseudomonas putida KT2440 universal stress protein NP_744792.1 3035478 R 160488 CDS NP_744793.1 26989368 1046043 complement(3036642..3037583) 1 NC_002947.3 similar to GP:9948229; identified by sequence similarity; LysR family transcriptional regulator 3037583 1046043 PP_2649 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744793.1 3036642 R 160488 CDS NP_744794.1 26989369 1046044 3037726..3038868 1 NC_002947.3 similar to GP:5916169, GB:U08997, GB:X66310, GB:X53144, GB:X53147, SP:P00367, SP:P49448, PID:31815, PID:478988, and PID:579924; identified by sequence similarity; iron-containing alcohol dehydrogenase 3038868 gbd 1046044 gbd Pseudomonas putida KT2440 iron-containing alcohol dehydrogenase NP_744794.1 3037726 D 160488 CDS NP_744795.1 26989370 1046045 3038913..3040256 1 NC_002947.3 identified by match to PFAM protein family HMM PF03977; major facilitator family transporter 3040256 1046045 PP_2651 Pseudomonas putida KT2440 major facilitator family transporter NP_744795.1 3038913 D 160488 CDS NP_744796.1 26989371 1046046 3040395..3041180 1 NC_002947.3 similar to GP:9478254; identified by sequence similarity; hydratase/decarboxylase 3041180 1046046 PP_2652 Pseudomonas putida KT2440 hydratase/decarboxylase NP_744796.1 3040395 D 160488 CDS NP_744797.1 26989372 1046047 complement(3041170..3041988) 1 NC_002947.3 similar to GP:3560014; identified by sequence similarity; Cro/CI family transcriptional regulator 3041988 1046047 PP_2653 Pseudomonas putida KT2440 Cro/CI family transcriptional regulator NP_744797.1 3041170 R 160488 CDS NP_744798.1 26989373 1046048 3042406..3042831 1 NC_002947.3 identified by match to PFAM protein family HMM PF01124; eicosanoid and glutathione metabolism membrane protein 3042831 1046048 PP_2654 Pseudomonas putida KT2440 eicosanoid and glutathione metabolism membrane protein NP_744798.1 3042406 D 160488 CDS NP_744799.1 26989374 1046049 3042903..3043136 1 NC_002947.3 hypothetical protein 3043136 1046049 PP_2655 Pseudomonas putida KT2440 hypothetical protein NP_744799.1 3042903 D 160488 CDS NP_744800.1 26989375 1046051 3043339..3044385 1 NC_002947.3 similar to GB:D90359, GB:M73442, GB:M73444, GB:X07024, SP:P21675, PID:29733, GB:L13385, GB:L13386, GB:L13387, SP:P43034, PID:1850956, PID:349824, PID:349826, PID:349828, GB:L13385, GB:L13386, GB:L13387, SP:P43034, PID:1850956, PID:349824, PID:349826, and PID:349828; identified by sequence similarity; phosphate ABC transporter substrate-binding protein 3044385 1046051 PP_2656 Pseudomonas putida KT2440 phosphate ABC transporter substrate-binding protein NP_744800.1 3043339 D 160488 CDS NP_744801.1 26989376 1046052 3044456..3045424 1 NC_002947.3 identified by match to PFAM protein family HMM PF00528; phosphate ABC transporter permease 3045424 1046052 PP_2657 Pseudomonas putida KT2440 phosphate ABC transporter permease NP_744801.1 3044456 D 160488 CDS NP_744802.1 26989377 1046053 3045421..3046314 1 NC_002947.3 similar to GB:M20132, GB:L29496, GB:M20260, SP:P10275, PID:178628, PID:178872, PID:178882, PID:178892, PID:178894, PID:178906, PID:460281, GB:L13385, GB:L13386, GB:L13387, SP:P43034, PID:1850956, PID:349824, PID:349826, and PID:349828; identified by sequence similarity; phosphate ABC transporter permease 3046314 1046053 PP_2658 Pseudomonas putida KT2440 phosphate ABC transporter permease NP_744802.1 3045421 D 160488 CDS NP_744803.1 26989378 1046054 3046311..3047150 1 NC_002947.3 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 3047150 1046054 PP_2659 Pseudomonas putida KT2440 phosphate ABC transporter ATP-binding protein NP_744803.1 3046311 D 160488 CDS NP_744804.1 26989379 1046055 3047167..3047943 1 NC_002947.3 hypothetical protein 3047943 1046055 PP_2660 Pseudomonas putida KT2440 hypothetical protein NP_744804.1 3047167 D 160488 CDS NP_744805.1 26989380 1046056 3047943..3048542 1 NC_002947.3 hypothetical protein 3048542 1046056 PP_2661 Pseudomonas putida KT2440 hypothetical protein NP_744805.1 3047943 D 160488 CDS NP_744806.1 26989381 1046057 3048838..3050025 1 NC_002947.3 hypothetical protein 3050025 1046057 PP_2662 Pseudomonas putida KT2440 hypothetical protein NP_744806.1 3048838 D 160488 CDS NP_744807.1 26989382 1046065 3050166..3051329 1 NC_002947.3 similar to GP:9947975; identified by sequence similarity; hypothetical protein 3051329 1046065 PP_2663 Pseudomonas putida KT2440 hypothetical protein NP_744807.1 3050166 D 160488 CDS NP_744808.1 26989383 1046081 3051229..3053196 1 NC_002947.3 identified by match to PFAM protein family HMM PF02518; PAS/PAC sensor hybrid histidine kinase 3053196 1046081 PP_2664 Pseudomonas putida KT2440 PAS/PAC sensor hybrid histidine kinase NP_744808.1 3051229 D 160488 CDS NP_744809.1 26989384 1046089 complement(3053242..3053907) 1 NC_002947.3 similar to GB:M89651, GB:D16366, GB:L49169, SP:P53539, and PID:1082038; identified by sequence similarity; LuxR family transcriptional regulator 3053907 agmR 1046089 agmR Pseudomonas putida KT2440 LuxR family transcriptional regulator NP_744809.1 3053242 R 160488 CDS NP_744810.1 26989385 1046090 complement(3053962..3054522) 1 NC_002947.3 hypothetical protein 3054522 1046090 PP_2666 Pseudomonas putida KT2440 hypothetical protein NP_744810.1 3053962 R 160488 CDS NP_744811.1 26989386 1046096 complement(3054830..3055621) 1 NC_002947.3 similar to SP:P16542, GB:X16300, PID:47992, and PID:47978; identified by sequence similarity; ABC transporter 3055621 1046096 PP_2667 Pseudomonas putida KT2440 ABC transporter NP_744811.1 3054830 R 160488 CDS NP_744812.1 26989387 1046097 complement(3055618..3056358) 1 NC_002947.3 similar to GP:10173669; identified by sequence similarity; ABC transporter ATP-binding protein 3056358 1046097 PP_2668 Pseudomonas putida KT2440 ABC transporter ATP-binding protein NP_744812.1 3055618 R 160488 CDS NP_744813.1 26989388 1046101 complement(3056355..3057344) 1 NC_002947.3 similar to GB:X64062, SP:Q00637, PID:1335657, and PID:409457; identified by sequence similarity; hypothetical protein 3057344 1046101 PP_2669 Pseudomonas putida KT2440 hypothetical protein NP_744813.1 3056355 R 160488 CDS NP_744814.1 26989389 1046102 3057324..3058658 1 NC_002947.3 hypothetical protein 3058658 1046102 PP_2670 Pseudomonas putida KT2440 hypothetical protein NP_744814.1 3057324 D 160488 CDS NP_744815.1 26989390 1046105 3058719..3059993 1 NC_002947.3 similar to GP:8671337; identified by sequence similarity; integral membrane sensor signal transduction histidine kinase 3059993 1046105 PP_2671 Pseudomonas putida KT2440 integral membrane sensor signal transduction histidine kinase NP_744815.1 3058719 D 160488 CDS NP_744816.1 26989391 1046110 3059993..3060631 1 NC_002947.3 similar to GP:8671336; identified by sequence similarity; LuxR family transcriptional regulator 3060631 1046110 PP_2672 Pseudomonas putida KT2440 LuxR family transcriptional regulator NP_744816.1 3059993 D 160488 CDS NP_744817.1 26989392 1046113 complement(3060837..3061496) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00805; pentapeptide repeat-containing protein 3061496 1046113 PP_2673 Pseudomonas putida KT2440 pentapeptide repeat-containing protein NP_744817.1 3060837 R 160488 CDS NP_744818.1 26989393 1046117 complement(3061563..3063458) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01011; quinoprotein ethanol dehydrogenase 3063458 qedH 1046117 qedH Pseudomonas putida KT2440 quinoprotein ethanol dehydrogenase NP_744818.1 3061563 R 160488 CDS NP_744819.1 26989394 1046118 3063713..3064174 1 NC_002947.3 similar to GP:9947984; identified by sequence similarity; cytochrome c-type protein 3064174 1046118 PP_2675 Pseudomonas putida KT2440 cytochrome c-type protein NP_744819.1 3063713 D 160488 CDS NP_744820.1 26989395 1046120 3064129..3065055 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01096; hypothetical protein 3065055 1046120 PP_2676 Pseudomonas putida KT2440 hypothetical protein NP_744820.1 3064129 D 160488 CDS NP_744821.1 26989396 1046123 3065058..3065825 1 NC_002947.3 hypothetical protein 3065825 1046123 PP_2677 Pseudomonas putida KT2440 hypothetical protein NP_744821.1 3065058 D 160488 CDS NP_744822.1 26989397 1046127 3065864..3066787 1 NC_002947.3 identified by match to PFAM protein family HMM PF00753; beta-lactamase domain-containing protein 3066787 1046127 PP_2678 Pseudomonas putida KT2440 beta-lactamase domain-containing protein NP_744822.1 3065864 D 160488 CDS NP_744823.1 26989398 1046129 3066959..3068746 1 NC_002947.3 identified by match to PFAM protein family HMM PF01011; quinoprotein ethanol dehydrogenase 3068746 1046129 PP_2679 Pseudomonas putida KT2440 quinoprotein ethanol dehydrogenase NP_744823.1 3066959 D 160488 CDS NP_744824.1 26989399 1046130 3068909..3070429 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01722; aldehyde dehydrogenase 3070429 1046130 PP_2680 Pseudomonas putida KT2440 aldehyde dehydrogenase NP_744824.1 3068909 D 160488 CDS NP_744825.1 26989400 1046135 3070783..3071055 1 NC_002947.3 with PqqC converts a biosynthetic intermediate to pyrroloquinoline quinone; pyrroloquinoline quinone biosynthesis protein PqqD 3071055 1046135 PP_2681 Pseudomonas putida KT2440 pyrroloquinoline quinone biosynthesis protein PqqD NP_744825.1 3070783 D 160488 CDS NP_744826.1 26989401 1046138 3071145..3072308 1 NC_002947.3 identified by match to PFAM protein family HMM PF00465; iron-containing alcohol dehydrogenase 3072308 1046138 PP_2682 Pseudomonas putida KT2440 iron-containing alcohol dehydrogenase NP_744826.1 3071145 D 160488 CDS NP_744827.1 26989402 1046144 3072259..3073962 1 NC_002947.3 identified by match to PFAM protein family HMM PF02518; PAS/PAC sensor hybrid histidine kinase 3073962 1046144 PP_2683 Pseudomonas putida KT2440 PAS/PAC sensor hybrid histidine kinase NP_744827.1 3072259 D 160488 CDS NP_744828.1 26989403 1046145 3074392..3075102 1 NC_002947.3 hypothetical protein 3075102 1046145 PP_2684 Pseudomonas putida KT2440 hypothetical protein NP_744828.1 3074392 D 160488 CDS NP_744829.1 26989404 1046150 complement(3075327..3076049) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00227; hypothetical protein 3076049 1046150 PP_2685 Pseudomonas putida KT2440 hypothetical protein NP_744829.1 3075327 R 160488 CDS NP_744830.1 26989405 1046154 complement(3076123..3076902) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01841; transglutaminase 3076902 1046154 PP_2686 Pseudomonas putida KT2440 transglutaminase NP_744830.1 3076123 R 160488 CDS NP_744831.1 26989406 1046155 complement(3076899..3077849) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04168; hypothetical protein 3077849 1046155 PP_2687 Pseudomonas putida KT2440 hypothetical protein NP_744831.1 3076899 R 160488 CDS NP_744832.1 26989407 1046156 complement(3077853..3079262) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04174; hypothetical protein 3079262 1046156 PP_2688 Pseudomonas putida KT2440 hypothetical protein NP_744832.1 3077853 R 160488 CDS NP_744833.1 26989408 1046157 complement(3079696..3080067) 1 NC_002947.3 similar to GB:J03732, SP:P03813, PID:145322, PID:882733, PID:1128956, GB:U00096, and PID:1789205; identified by sequence similarity; endoribonuclease 3080067 1046157 PP_2689 Pseudomonas putida KT2440 endoribonuclease NP_744833.1 3079696 R 160488 CDS NP_744834.1 26989409 1046158 complement(3080095..3080796) 1 NC_002947.3 hypothetical protein 3080796 1046158 PP_2690 Pseudomonas putida KT2440 hypothetical protein NP_744834.1 3080095 R 160488 CDS NP_744835.1 26989410 1046159 complement(3080793..3082511) 1 NC_002947.3 hypothetical protein 3082511 1046159 PP_2691 Pseudomonas putida KT2440 hypothetical protein NP_744835.1 3080793 R 160488 CDS NP_744836.1 26989411 1046160 complement(3082514..3084064) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02028; BCCT family transporter 3084064 1046160 PP_2692 Pseudomonas putida KT2440 BCCT family transporter NP_744836.1 3082514 R 160488 CDS NP_744837.1 26989412 1046161 complement(3084120..3085106) 1 NC_002947.3 similar to GP:15140243; identified by sequence similarity; dipeptidase 3085106 1046161 PP_2693 Pseudomonas putida KT2440 dipeptidase NP_744837.1 3084120 R 160488 CDS NP_744838.1 26989413 1046162 complement(3085120..3086562) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01722; aldehyde dehydrogenase 3086562 1046162 PP_2694 Pseudomonas putida KT2440 aldehyde dehydrogenase NP_744838.1 3085120 R 160488 CDS NP_744839.1 26989414 1046164 3086649..3087545 1 NC_002947.3 similar to GB:X60036, GB:X77337, and SP:Q00325; identified by sequence similarity; LysR family transcriptional regulator 3087545 1046164 PP_2695 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744839.1 3086649 D 160488 CDS NP_744840.1 26989415 1046165 complement(3087612..3088541) 1 NC_002947.3 similar to GB:X59618, SP:P31350, and PID:36155; identified by sequence similarity; transcriptional activator MetR 3088541 metR-2 1046165 metR-2 Pseudomonas putida KT2440 transcriptional activator MetR NP_744840.1 3087612 R 160488 CDS NP_744841.1 26989416 1046166 complement(3088640..3089221) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01613; flavin reductase domain-containing protein 3089221 1046166 PP_2697 Pseudomonas putida KT2440 flavin reductase domain-containing protein NP_744841.1 3088640 R 160488 CDS NP_744842.1 26989417 1046177 complement(3089175..3090209) 1 NC_002947.3 catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 3090209 metE 1046177 metE Pseudomonas putida KT2440 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase NP_744842.1 3089175 R 160488 CDS NP_744843.1 26989418 1046211 complement(3090236..3091288) 1 NC_002947.3 hypothetical protein 3091288 1046211 PP_2699 Pseudomonas putida KT2440 hypothetical protein NP_744843.1 3090236 R 160488 CDS NP_744844.1 26989419 1046217 3091450..3091950 1 NC_002947.3 similar to GP:5441879; identified by sequence similarity; redoxin domain-containing protein 3091950 1046217 PP_2700 Pseudomonas putida KT2440 redoxin domain-containing protein NP_744844.1 3091450 D 160488 CDS NP_744845.1 26989420 1046218 3092037..3092975 1 NC_002947.3 similar to SP:P12985, and PID:48337; identified by sequence similarity; LysR family transcriptional regulator 3092975 1046218 PP_2701 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744845.1 3092037 D 160488 CDS NP_744846.1 26989421 1046219 complement(3092952..3094082) 1 NC_002947.3 similar to GB:D13969, SP:P35227, PID:285933, GB:D13969, SP:P35227, and PID:285933; identified by sequence similarity; hypothetical protein 3094082 1046219 PP_2702 Pseudomonas putida KT2440 hypothetical protein NP_744846.1 3092952 R 160488 CDS NP_744847.1 26989422 1046223 3094150..3095757 1 NC_002947.3 identified by match to PFAM protein family HMM PF00083; major facilitator superfamily transporter 3095757 1046223 PP_2703 Pseudomonas putida KT2440 major facilitator superfamily transporter NP_744847.1 3094150 D 160488 CDS NP_744848.1 26989423 1046224 3095759..3096943 1 NC_002947.3 similar to GB:M25667, GB:S66533, GB:S66534, GB:S66541, SP:P17677, and PID:182970; identified by sequence similarity; M20/M25/M40 family peptidase 3096943 1046224 PP_2704 Pseudomonas putida KT2440 M20/M25/M40 family peptidase NP_744848.1 3095759 D 160488 CDS NP_744849.1 26989424 1046252 3096994..3097329 1 NC_002947.3 hypothetical protein 3097329 1046252 PP_2705 Pseudomonas putida KT2440 hypothetical protein NP_744849.1 3096994 D 160488 CDS NP_744850.1 26989425 1046262 3097395..3097637 1 NC_002947.3 hypothetical protein 3097637 1046262 PP_2706 Pseudomonas putida KT2440 hypothetical protein NP_744850.1 3097395 D 160488 CDS NP_744851.1 26989426 1041586 3097634..3098431 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00633; exodeoxyribonuclease III 3098431 1041586 PP_2707 Pseudomonas putida KT2440 exodeoxyribonuclease III NP_744851.1 3097634 D 160488 CDS NP_744852.1 26989427 1041743 3098549..3099229 1 NC_002947.3 hypothetical protein 3099229 1041743 PP_2708 Pseudomonas putida KT2440 hypothetical protein NP_744852.1 3098549 D 160488 CDS NP_744853.1 26989428 1041738 3099219..3100688 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01734; long-chain-fatty-acid--CoA ligase 3100688 1041738 PP_2709 Pseudomonas putida KT2440 long-chain-fatty-acid--CoA ligase NP_744853.1 3099219 D 160488 CDS NP_744854.1 26989429 1041716 3100697..3101377 1 NC_002947.3 similar to GP:9658555; identified by sequence similarity; hypothetical protein 3101377 1041716 PP_2710 Pseudomonas putida KT2440 hypothetical protein NP_744854.1 3100697 D 160488 CDS NP_744855.1 26989430 1041753 3101364..3102170 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01500; short chain dehydrogenase 3102170 1041753 PP_2711 Pseudomonas putida KT2440 short chain dehydrogenase NP_744855.1 3101364 D 160488 CDS NP_744856.1 26989431 1041745 3102167..3102808 1 NC_002947.3 hypothetical protein 3102808 1041745 PP_2712 Pseudomonas putida KT2440 hypothetical protein NP_744856.1 3102167 D 160488 CDS NP_744857.1 26989432 1041732 3102811..3103473 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01387; DNA-binding response regulator 3103473 1041732 PP_2713 Pseudomonas putida KT2440 DNA-binding response regulator NP_744857.1 3102811 D 160488 CDS NP_744858.1 26989433 1047022 3103470..3104834 1 NC_002947.3 identified by match to PFAM protein family HMM PF00512; sensor histidine kinase 3104834 1047022 PP_2714 Pseudomonas putida KT2440 sensor histidine kinase NP_744858.1 3103470 D 160488 CDS NP_744859.1 26989434 1041771 complement(3104847..3105548) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03358; arsH protein 3105548 arsH 1041771 arsH Pseudomonas putida KT2440 arsH protein NP_744859.1 3104847 R 160488 CDS NP_744860.1 26989435 1041757 complement(3105562..3106032) 1 NC_002947.3 similar to GP:3095052, and GP:3095052; identified by sequence similarity; arsenate reductase 3106032 arsC-3 1041757 arsC-3 Pseudomonas putida KT2440 arsenate reductase NP_744860.1 3105562 R 160488 CDS NP_744861.1 26989436 1041749 complement(3106061..3107344) 1 NC_002947.3 similar to GP:3095051; identified by sequence similarity; arsenite efflux transporter 3107344 arsB-2 1041749 arsB-2 Pseudomonas putida KT2440 arsenite efflux transporter NP_744861.1 3106061 R 160488 CDS NP_744862.1 26989437 1041740 complement(3107366..3107713) 1 NC_002947.3 similar to GP:11691633; identified by sequence similarity; arsenic resistance transcriptional regulator 3107713 arsR-2 1041740 arsR-2 Pseudomonas putida KT2440 arsenic resistance transcriptional regulator NP_744862.1 3107366 R 160488 CDS NP_744863.1 26989438 1047008 complement(3107899..3108003) 1 NC_002947.3 hypothetical protein 3108003 1047008 PP_2719 Pseudomonas putida KT2440 hypothetical protein NP_744863.1 3107899 R 160488 CDS NP_744864.1 26989439 1041788 3108077..3108298 1 NC_002947.3 hypothetical protein 3108298 1041788 PP_2720 Pseudomonas putida KT2440 hypothetical protein NP_744864.1 3108077 D 160488 CDS NP_744865.1 26989440 1041752 complement(3108277..3108627) 1 NC_002947.3 hypothetical protein 3108627 1041752 PP_2721 Pseudomonas putida KT2440 hypothetical protein NP_744865.1 3108277 R 160488 CDS NP_744866.1 26989441 1041764 complement(3108687..3109151) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03794; hemerythrin HHE cation binding domain-containing protein 3109151 1041764 PP_2722 Pseudomonas putida KT2440 hemerythrin HHE cation binding domain-containing protein NP_744866.1 3108687 R 160488 CDS NP_744867.1 26989442 1041742 complement(3109320..3110177) 1 NC_002947.3 similar to SP:P32687, PID:409796, GB:U00096, and PID:1790459; identified by sequence similarity; short chain dehydrogenase/reductase oxidoreductase 3110177 1041742 PP_2723 Pseudomonas putida KT2440 short chain dehydrogenase/reductase oxidoreductase NP_744867.1 3109320 R 160488 CDS NP_744868.1 26989443 1041804 3110372..3110896 1 NC_002947.3 hypothetical protein 3110896 1041804 PP_2724 Pseudomonas putida KT2440 hypothetical protein NP_744868.1 3110372 D 160488 CDS NP_744869.1 26989444 1047013 complement(3110953..3111495) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01382; protease PfpI 3111495 pfpI 1047013 pfpI Pseudomonas putida KT2440 protease PfpI NP_744869.1 3110953 R 160488 CDS NP_744870.1 26989445 1041780 complement(3111585..3112277) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04239; hypothetical protein 3112277 1041780 PP_2726 Pseudomonas putida KT2440 hypothetical protein NP_744870.1 3111585 R 160488 CDS NP_744871.1 26989446 1043350 complement(3112373..3113143) 1 NC_002947.3 similar to SP:P21158; identified by sequence similarity; C-factor 3113143 1043350 PP_2727 Pseudomonas putida KT2440 C-factor NP_744871.1 3112373 R 160488 CDS NP_744872.1 26989447 1041765 complement(3113222..3113713) 1 NC_002947.3 similar to GB:D00496, SP:P17166, PID:216760, GB:D00496, SP:P17166, and PID:216760; identified by sequence similarity; hypothetical protein 3113713 1041765 PP_2728 Pseudomonas putida KT2440 hypothetical protein NP_744872.1 3113222 R 160488 CDS NP_744873.1 26989448 1046258 3113697..3114410 1 NC_002947.3 identified by match to PFAM protein family HMM PF00042; hypothetical protein 3114410 1046258 PP_2729 Pseudomonas putida KT2440 hypothetical protein NP_744873.1 3113697 D 160488 CDS NP_744874.1 26989449 1045437 3114413..3114949 1 NC_002947.3 lipoprotein 3114949 1045437 PP_2730 Pseudomonas putida KT2440 lipoprotein NP_744874.1 3114413 D 160488 CDS NP_744875.1 26989450 1041907 3114946..3115251 1 NC_002947.3 hypothetical protein 3115251 1041907 PP_2731 Pseudomonas putida KT2440 hypothetical protein NP_744875.1 3114946 D 160488 CDS NP_744876.1 26989451 1042618 3115260..3116786 1 NC_002947.3 identified by match to PFAM protein family HMM PF04244; hypothetical protein 3116786 1042618 PP_2732 Pseudomonas putida KT2440 hypothetical protein NP_744876.1 3115260 D 160488 CDS NP_744877.1 26989452 1041887 complement(3116903..3117391) 1 NC_002947.3 hypothetical protein 3117391 1041887 PP_2733 Pseudomonas putida KT2440 hypothetical protein NP_744877.1 3116903 R 160488 CDS NP_744878.1 26989453 1045419 complement(3117391..3118578) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02353; cyclopropane-fatty-acyl-phospholipid synthase 3118578 cfa 1045419 cfa Pseudomonas putida KT2440 cyclopropane-fatty-acyl-phospholipid synthase NP_744878.1 3117391 R 160488 CDS NP_744879.1 26989454 1042235 complement(3118628..3119437) 1 NC_002947.3 hypothetical protein 3119437 1042235 PP_2735 Pseudomonas putida KT2440 hypothetical protein NP_744879.1 3118628 R 160488 CDS NP_744880.1 26989455 1041871 complement(3119434..3120681) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01593; amine oxidase 3120681 1041871 PP_2736 Pseudomonas putida KT2440 amine oxidase NP_744880.1 3119434 R 160488 CDS NP_744881.1 26989456 1042323 complement(3120688..3121440) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01500; short chain dehydrogenase/reductase oxidoreductase 3121440 1042323 PP_2737 Pseudomonas putida KT2440 short chain dehydrogenase/reductase oxidoreductase NP_744881.1 3120688 R 160488 CDS NP_744882.1 26989457 1043666 complement(3121437..3121859) 1 NC_002947.3 hypothetical protein 3121859 1043666 PP_2738 Pseudomonas putida KT2440 hypothetical protein NP_744882.1 3121437 R 160488 CDS NP_744883.1 26989458 1041947 complement(3121963..3122418) 1 NC_002947.3 similar to GB:L40411, SP:Q15652, and PID:703116; identified by sequence similarity; sensory box protein 3122418 1041947 PP_2739 Pseudomonas putida KT2440 sensory box protein NP_744883.1 3121963 R 160488 CDS NP_744884.1 26989459 1043217 3122563..3123450 1 NC_002947.3 identified by match to PFAM protein family HMM PF00376; MerR family transcriptional regulator 3123450 1043217 PP_2740 Pseudomonas putida KT2440 MerR family transcriptional regulator NP_744884.1 3122563 D 160488 CDS NP_744885.1 26989460 1041942 complement(3123612..3125249) 1 NC_002947.3 similar to GB:X71874, SP:P40306, PID:406227, GB:X71874, SP:P40306, and PID:406227; identified by sequence similarity; mechanosensitive ion channel protein MscS 3125249 1041942 PP_2741 Pseudomonas putida KT2440 mechanosensitive ion channel protein MscS NP_744885.1 3123612 R 160488 CDS NP_744886.1 26989461 1045309 complement(3125317..3125676) 1 NC_002947.3 hypothetical protein 3125676 1045309 PP_2742 Pseudomonas putida KT2440 hypothetical protein NP_744886.1 3125317 R 160488 CDS NP_744887.1 26989462 1043357 complement(3125673..3126266) 1 NC_002947.3 similar to GP:11061692; identified by sequence similarity; acetyltransferase 3126266 1043357 PP_2743 Pseudomonas putida KT2440 acetyltransferase NP_744887.1 3125673 R 160488 CDS NP_744888.1 26989463 1041962 complement(3126462..3127421) 1 NC_002947.3 similar to SP:P08330; identified by sequence similarity; ribose-phosphate pyrophosphokinase 3127421 1041962 PP_2744 Pseudomonas putida KT2440 ribose-phosphate pyrophosphokinase NP_744888.1 3126462 R 160488 CDS NP_744889.1 26989464 1045681 complement(3127517..3128413) 1 NC_002947.3 similar to SP:P03807; identified by sequence similarity; universal stress protein 3128413 1045681 PP_2745 Pseudomonas putida KT2440 universal stress protein NP_744889.1 3127517 R 160488 CDS NP_744890.1 26989465 1041969 3128751..3130160 1 NC_002947.3 similar to GP:9948360; identified by sequence similarity; hypothetical protein 3130160 1041969 PP_2746 Pseudomonas putida KT2440 hypothetical protein NP_744890.1 3128751 D 160488 CDS NP_744891.1 26989466 1042623 3130181..3131152 1 NC_002947.3 similar to GB:M68571, SP:P26979, and PID:154368; identified by sequence similarity; hypothetical protein 3131152 1042623 PP_2747 Pseudomonas putida KT2440 hypothetical protein NP_744891.1 3130181 D 160488 CDS NP_744892.1 26989467 1043331 3131119..3131919 1 NC_002947.3 similar to GP:6752325; identified by sequence similarity; branched-chain amino acid ABC transporter ATP-binding protein 3131919 1043331 PP_2748 Pseudomonas putida KT2440 branched-chain amino acid ABC transporter ATP-binding protein NP_744892.1 3131119 D 160488 CDS NP_744893.1 26989468 1041975 3131916..3132797 1 NC_002947.3 similar to GB:M58480, SP:P24695, and PID:154644; identified by sequence similarity; branched-chain amino acid ABC transporter permease 3132797 1041975 PP_2749 Pseudomonas putida KT2440 branched-chain amino acid ABC transporter permease NP_744893.1 3131916 D 160488 CDS NP_744894.1 26989469 1045909 3132802..3133866 1 NC_002947.3 similar to GP:9756928; identified by sequence similarity; branched-chain amino acid ABC transporter permease 3133866 1045909 PP_2750 Pseudomonas putida KT2440 branched-chain amino acid ABC transporter permease NP_744894.1 3132802 D 160488 CDS NP_744895.1 26989470 1045956 3133945..3135285 1 NC_002947.3 hypothetical protein 3135285 1045956 PP_2751 Pseudomonas putida KT2440 hypothetical protein NP_744895.1 3133945 D 160488 CDS NP_744896.1 26989471 1041976 3135345..3136679 1 NC_002947.3 hypothetical protein 3136679 1041976 PP_2752 Pseudomonas putida KT2440 hypothetical protein NP_744896.1 3135345 D 160488 CDS NP_744897.1 26989472 1043347 3136796..3137569 1 NC_002947.3 similar to SP:P22731; identified by sequence similarity; branched-chain amino acid ABC transporter ATP-binding protein 3137569 1043347 PP_2753 Pseudomonas putida KT2440 branched-chain amino acid ABC transporter ATP-binding protein NP_744897.1 3136796 D 160488 CDS NP_744898.1 26989473 1041993 3137769..3139208 1 NC_002947.3 similar to GP:9945994; identified by sequence similarity; porin 3139208 1041993 PP_2754 Pseudomonas putida KT2440 porin NP_744898.1 3137769 D 160488 CDS NP_744899.1 26989474 1045971 3139444..3140688 1 NC_002947.3 identified by match to PFAM protein family HMM PF00441; hypothetical protein 3140688 1045971 PP_2755 Pseudomonas putida KT2440 hypothetical protein NP_744899.1 3139444 D 160488 CDS NP_744900.1 26989475 1042012 3140698..3141084 1 NC_002947.3 hypothetical protein 3141084 1042012 PP_2756 Pseudomonas putida KT2440 hypothetical protein NP_744900.1 3140698 D 160488 CDS NP_744901.1 26989476 1042003 3141081..3142052 1 NC_002947.3 similar to GP:6714794; identified by sequence similarity; sugar-binding protein 3142052 1042003 PP_2757 Pseudomonas putida KT2440 sugar-binding protein NP_744901.1 3141081 D 160488 CDS NP_744902.1 26989477 1045162 3142049..3143077 1 NC_002947.3 similar to GB:L25415, PID:496154, and SP:P53662; identified by sequence similarity; ribose ABC transporter substrate-binding protein 3143077 1045162 PP_2758 Pseudomonas putida KT2440 ribose ABC transporter substrate-binding protein NP_744902.1 3142049 D 160488 CDS NP_744903.1 26989478 1042032 3143074..3144612 1 NC_002947.3 similar to GP:6714793; identified by sequence similarity; ribose ABC transporter ATP-binding protein 3144612 1042032 PP_2759 Pseudomonas putida KT2440 ribose ABC transporter ATP-binding protein NP_744903.1 3143074 D 160488 CDS NP_744904.1 26989479 1045713 3144527..3145573 1 NC_002947.3 similar to GP:6714794; identified by sequence similarity; ribose transport permease 3145573 1045713 PP_2760 Pseudomonas putida KT2440 ribose transport permease NP_744904.1 3144527 D 160488 CDS NP_744905.1 26989480 1042038 3145575..3146561 1 NC_002947.3 similar to GP:6714794; identified by sequence similarity; ribose ABC transporter permease 3146561 1042038 PP_2761 Pseudomonas putida KT2440 ribose ABC transporter permease NP_744905.1 3145575 D 160488 CDS NP_744906.1 26989481 1045905 complement(3146627..3147865) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02770; hypothetical protein 3147865 1045905 PP_2762 Pseudomonas putida KT2440 hypothetical protein NP_744906.1 3146627 R 160488 CDS NP_744907.1 26989482 1042066 3147847..3148002 1 NC_002947.3 hypothetical protein 3148002 1042066 PP_2763 Pseudomonas putida KT2440 hypothetical protein NP_744907.1 3147847 D 160488 CDS NP_744908.1 26989483 1042054 3148204..3148764 1 NC_002947.3 identified by match to PFAM protein family HMM PF03358; NADH-dependent FMN reductase MsuE 3148764 msuE 1042054 msuE Pseudomonas putida KT2440 NADH-dependent FMN reductase MsuE NP_744908.1 3148204 D 160488 CDS NP_744909.1 26989484 1045898 3148791..3149882 1 NC_002947.3 similar to SP:P40402; identified by sequence similarity; luciferase 3149882 1045898 PP_2765 Pseudomonas putida KT2440 luciferase NP_744909.1 3148791 D 160488 CDS NP_744910.1 26989485 1042153 3149894..3151024 1 NC_002947.3 similar to GB:M68571, SP:P26979, PID:154368, GB:M68571, SP:P26979, and PID:154368; identified by sequence similarity; long-chain-fatty-acid--CoA ligase-like protein 3151024 1042153 PP_2766 Pseudomonas putida KT2440 long-chain-fatty-acid--CoA ligase-like protein NP_744910.1 3149894 D 160488 CDS NP_744911.1 26989486 1045697 3151034..3151867 1 NC_002947.3 similar to GP:6752325; identified by sequence similarity; branched-chain amino acid ABC transporter ATP-binding protein 3151867 1045697 PP_2767 Pseudomonas putida KT2440 branched-chain amino acid ABC transporter ATP-binding protein NP_744911.1 3151034 D 160488 CDS NP_744912.1 26989487 1042163 3151843..3152724 1 NC_002947.3 similar to GB:M58480, SP:P24695, and PID:154644; identified by sequence similarity; branched-chain amino acid ABC transporter permease 3152724 1042163 PP_2768 Pseudomonas putida KT2440 branched-chain amino acid ABC transporter permease NP_744912.1 3151843 D 160488 CDS NP_744913.1 26989488 1042160 3152737..3153726 1 NC_002947.3 similar to GP:9756928; identified by sequence similarity; branched-chain amino acid ABC transporter permease 3153726 1042160 PP_2769 Pseudomonas putida KT2440 branched-chain amino acid ABC transporter permease NP_744913.1 3152737 D 160488 CDS NP_744914.1 26989489 1042217 3153794..3155119 1 NC_002947.3 hypothetical protein 3155119 1042217 PP_2770 Pseudomonas putida KT2440 hypothetical protein NP_744914.1 3153794 D 160488 CDS NP_744915.1 26989490 1042350 complement(3155156..3156259) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01199; Fis family transcriptional regulator 3156259 1042350 PP_2771 Pseudomonas putida KT2440 Fis family transcriptional regulator NP_744915.1 3155156 R 160488 CDS NP_744916.1 26989491 1042611 complement(3156268..3157455) 1 NC_002947.3 similar to GP:2582423; identified by sequence similarity; monooxygenase 3157455 1042611 PP_2772 Pseudomonas putida KT2440 monooxygenase NP_744916.1 3156268 R 160488 CDS NP_744917.1 26989492 1042281 complement(3157511..3157669) 1 NC_002947.3 hypothetical protein 3157669 1042281 PP_2773 Pseudomonas putida KT2440 hypothetical protein NP_744917.1 3157511 R 160488 CDS NP_744918.1 26989493 1042237 3157979..3160075 1 NC_002947.3 similar to GP:9367460; identified by sequence similarity; glycine betaine/L-proline ABC transporter ATPase/permease fusion protein 3160075 1042237 PP_2774 Pseudomonas putida KT2440 glycine betaine/L-proline ABC transporter ATPase/permease fusion protein NP_744918.1 3157979 D 160488 CDS NP_744919.1 26989494 1042630 3160006..3161130 1 NC_002947.3 similar to GP:7188801; identified by sequence similarity; glycine/betaine ABC transporter substrate-binding protein 3161130 1042630 PP_2775 Pseudomonas putida KT2440 glycine/betaine ABC transporter substrate-binding protein NP_744919.1 3160006 D 160488 CDS NP_744920.1 26989495 1042315 3161127..3162050 1 NC_002947.3 similar to GB:U02081, and PID:548082; identified by sequence similarity; homocysteine S-methyltransferase 3162050 1042315 PP_2776 Pseudomonas putida KT2440 homocysteine S-methyltransferase NP_744920.1 3161127 D 160488 CDS NP_744921.1 26989496 1042296 3162630..3163199 1 NC_002947.3 identified by match to PFAM protein family HMM PF00550; acyl carrier protein 3163199 1042296 PP_2777 Pseudomonas putida KT2440 acyl carrier protein NP_744921.1 3162630 D 160488 CDS NP_744922.1 26989497 1041714 3163208..3164485 1 NC_002947.3 similar to GB:X73124, SP:P39638, PID:414004, and GB:AL009126; identified by sequence similarity; 3-oxoacyl-ACP synthase 3164485 1041714 PP_2778 Pseudomonas putida KT2440 3-oxoacyl-ACP synthase NP_744922.1 3163208 D 160488 CDS NP_744923.1 26989498 1042646 3164487..3165569 1 NC_002947.3 similar to GP:7209616; identified by sequence similarity; beta-ketoacyl synthase 3165569 1042646 PP_2779 Pseudomonas putida KT2440 beta-ketoacyl synthase NP_744923.1 3164487 D 160488 CDS NP_744924.1 26989499 1042431 3165566..3166864 1 NC_002947.3 similar to GP:2738156, GB:X73124, SP:P39638, PID:414004, and GB:AL009126; identified by sequence similarity; 3-oxoacyl-ACP synthase 3166864 1042431 PP_2780 Pseudomonas putida KT2440 3-oxoacyl-ACP synthase NP_744924.1 3165566 D 160488 CDS NP_744925.1 26989500 1042411 3166735..3168072 1 NC_002947.3 identified by match to PFAM protein family HMM PF04198; beta-ketoacyl synthase 3168072 1042411 PP_2781 Pseudomonas putida KT2440 beta-ketoacyl synthase NP_744925.1 3166735 D 160488 CDS NP_744926.1 26989501 1042644 3168103..3170982 1 NC_002947.3 similar to SP:P42588; identified by sequence similarity; pyridoxalphosphate dependent aminotransferase, class III 3170982 1042644 PP_2782 Pseudomonas putida KT2440 pyridoxalphosphate dependent aminotransferase, class III NP_744926.1 3168103 D 160488 CDS NP_744927.1 26989502 1041924 3170992..3171729 1 NC_002947.3 similar to GP:1502421, SP:P25921, and PID:150653; identified by sequence similarity; 3-oxoacyl-ACP reductase 3171729 1041924 PP_2783 Pseudomonas putida KT2440 3-oxoacyl-ACP reductase NP_744927.1 3170992 D 160488 CDS NP_744928.1 26989503 1043736 3171726..3172490 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01500; short chain dehydrogenase/reductase oxidoreductase 3172490 1043736 PP_2784 Pseudomonas putida KT2440 short chain dehydrogenase/reductase oxidoreductase NP_744928.1 3171726 D 160488 CDS NP_744929.1 26989504 1042641 3172493..3173776 1 NC_002947.3 hypothetical protein 3173776 1042641 PP_2785 Pseudomonas putida KT2440 hypothetical protein NP_744929.1 3172493 D 160488 CDS NP_744930.1 26989505 1042661 3173827..3174663 1 NC_002947.3 hypothetical protein 3174663 1042661 PP_2786 Pseudomonas putida KT2440 hypothetical protein NP_744930.1 3173827 D 160488 CDS NP_744931.1 26989506 1042645 3174697..3177306 1 NC_002947.3 identified by match to PFAM protein family HMM PF04276; transporter 3177306 1042645 PP_2787 Pseudomonas putida KT2440 transporter NP_744931.1 3174697 D 160488 CDS NP_744932.1 26989507 1042643 complement(3177376..3177759) 1 NC_002947.3 similar to GP:6179679; identified by sequence similarity; MerR family transcriptional regulator 3177759 1042643 PP_2788 Pseudomonas putida KT2440 MerR family transcriptional regulator NP_744932.1 3177376 R 160488 CDS NP_744933.1 26989508 1042654 complement(3177923..3178528) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03358; oxidoreductase 3178528 1042654 PP_2789 Pseudomonas putida KT2440 oxidoreductase NP_744933.1 3177923 R 160488 CDS NP_744934.1 26989509 1043745 complement(3178718..3180670) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02954; Fis family transcriptional regulator 3180670 1043745 PP_2790 Pseudomonas putida KT2440 Fis family transcriptional regulator NP_744934.1 3178718 R 160488 CDS NP_744935.1 26989510 1042647 3180801..3181931 1 NC_002947.3 identified by match to PFAM protein family HMM PF01636; aminoglycoside phosphotransferase 3181931 1042647 PP_2791 Pseudomonas putida KT2440 aminoglycoside phosphotransferase NP_744935.1 3180801 D 160488 CDS NP_744936.1 26989511 1042658 3181928..3182284 1 NC_002947.3 hypothetical protein 3182284 1042658 PP_2792 Pseudomonas putida KT2440 hypothetical protein NP_744936.1 3181928 D 160488 CDS NP_744937.1 26989512 1042650 3182338..3183510 1 NC_002947.3 similar to GP:6683573; identified by sequence similarity; acyl-CoA dehydrogenase 3183510 1042650 PP_2793 Pseudomonas putida KT2440 acyl-CoA dehydrogenase NP_744937.1 3182338 D 160488 CDS NP_744938.1 26989513 1042655 3183510..3184277 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01500; short chain dehydrogenase/reductase oxidoreductase 3184277 1042655 PP_2794 Pseudomonas putida KT2440 short chain dehydrogenase/reductase oxidoreductase NP_744938.1 3183510 D 160488 CDS NP_744939.1 26989514 1042652 3184361..3186007 1 NC_002947.3 activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 3186007 1042652 PP_2795 Pseudomonas putida KT2440 acyl-CoA synthetase NP_744939.1 3184361 D 160488 CDS NP_744940.1 26989515 1042673 3186062..3186385 1 NC_002947.3 similar to GP:9949357; identified by sequence similarity; hypothetical protein 3186385 1042673 PP_2796 Pseudomonas putida KT2440 hypothetical protein NP_744940.1 3186062 D 160488 CDS NP_744941.1 26989516 1042648 3186382..3188040 1 NC_002947.3 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 3188040 actP 1042648 actP Pseudomonas putida KT2440 acetate permease NP_744941.1 3186382 D 160488 CDS NP_744942.1 26989517 1042656 complement(3188302..3189210) 1 NC_002947.3 similar to GP:6759577, GB:L29436, and PID:459909; identified by sequence similarity; oxidoreductase 3189210 1042656 PP_2798 Pseudomonas putida KT2440 oxidoreductase NP_744942.1 3188302 R 160488 CDS NP_744943.1 26989518 1042678 complement(3189267..3190646) 1 NC_002947.3 similar to GP:9802157; identified by sequence similarity; aminotransferase 3190646 1042678 PP_2799 Pseudomonas putida KT2440 aminotransferase NP_744943.1 3189267 R 160488 CDS NP_744944.1 26989519 1042669 complement(3190742..3191995) 1 NC_002947.3 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase 3191995 1042669 PP_2800 Pseudomonas putida KT2440 diaminobutyrate--2-oxoglutarate aminotransferase NP_744944.1 3190742 R 160488 CDS NP_744945.1 26989520 1042676 complement(3192033..3193457) 1 NC_002947.3 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase 3193457 1042676 PP_2801 Pseudomonas putida KT2440 gamma-aminobutyraldehyde dehydrogenase NP_744945.1 3192033 R 160488 CDS NP_744946.1 26989521 1042666 complement(3193535..3194866) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01988; amino acid permease 3194866 1042666 PP_2802 Pseudomonas putida KT2440 amino acid permease NP_744946.1 3193535 R 160488 CDS NP_744947.1 26989522 1042663 complement(3194879..3196063) 1 NC_002947.3 similar to GB:U11552, GB:U09353, PID:1314483, PID:1513077, PID:520485, and PID:558082; identified by sequence similarity; 1,3-propanediol dehydrogenase 3196063 dhaT 1042663 dhaT Pseudomonas putida KT2440 1,3-propanediol dehydrogenase NP_744947.1 3194879 R 160488 CDS NP_744948.1 26989523 1042660 complement(3196255..3197130) 1 NC_002947.3 similar to GP:9454064, and GP:12698395; identified by sequence similarity; alpha/beta hydrolase 3197130 1042660 PP_2804 Pseudomonas putida KT2440 alpha/beta hydrolase NP_744948.1 3196255 R 160488 CDS NP_744949.1 26989524 1042675 complement(3197127..3198653) 1 NC_002947.3 similar to GB:Z36940, SP:P45491, and PID:535811; identified by sequence similarity; monooxygenase flavin-binding family protein 3198653 1042675 PP_2805 Pseudomonas putida KT2440 monooxygenase flavin-binding family protein NP_744949.1 3197127 R 160488 CDS NP_744950.1 26989525 1042665 complement(3198930..3199511) 1 NC_002947.3 similar to GP:5420026; identified by sequence similarity; TetR family transcriptional regulator 3199511 1042665 PP_2806 Pseudomonas putida KT2440 TetR family transcriptional regulator NP_744950.1 3198930 R 160488 CDS NP_744951.1 26989526 1042657 3199762..3200649 1 NC_002947.3 similar to GP:11035010; identified by sequence similarity; hypothetical protein 3200649 1042657 PP_2807 Pseudomonas putida KT2440 hypothetical protein NP_744951.1 3199762 D 160488 CDS NP_744952.1 26989527 1042668 3200670..3202037 1 NC_002947.3 identified by match to PFAM protein family HMM PF01494; oxidoreductase 3202037 1042668 PP_2808 Pseudomonas putida KT2440 oxidoreductase NP_744952.1 3200670 D 160488 CDS NP_744953.1 26989528 1042680 3202049..3202774 1 NC_002947.3 hypothetical protein 3202774 1042680 PP_2809 Pseudomonas putida KT2440 hypothetical protein NP_744953.1 3202049 D 160488 CDS NP_744954.1 26989529 1042685 3203247..3204668 1 NC_002947.3 similar to GB:X56958, SP:Q01485, PID:29491, GB:X56958, SP:Q01485, and PID:29491; identified by sequence similarity; hypothetical protein 3204668 1042685 PP_2810 Pseudomonas putida KT2440 hypothetical protein NP_744954.1 3203247 D 160488 CDS NP_744955.1 26989530 1042672 3204694..3206340 1 NC_002947.3 hypothetical protein 3206340 1042672 PP_2811 Pseudomonas putida KT2440 hypothetical protein NP_744955.1 3204694 D 160488 CDS NP_744956.1 26989531 1042692 3206349..3208763 1 NC_002947.3 similar to GP:9949187, and GP:12698403; identified by sequence similarity; transporter 3208763 1042692 PP_2812 Pseudomonas putida KT2440 transporter NP_744956.1 3206349 D 160488 CDS NP_744957.1 26989532 1042688 3208774..3209736 1 NC_002947.3 identified by match to PFAM protein family HMM PF02012; BNR repeat-containing protein 3209736 1042688 PP_2813 Pseudomonas putida KT2440 BNR repeat-containing protein NP_744957.1 3208774 D 160488 CDS NP_744958.1 26989533 1042682 complement(3209853..3210722) 1 NC_002947.3 similar to GP:11035010; identified by sequence similarity; hypothetical protein 3210722 1042682 PP_2814 Pseudomonas putida KT2440 hypothetical protein NP_744958.1 3209853 R 160488 CDS NP_744959.1 26989534 1042677 3210961..3212214 1 NC_002947.3 similar to GB:L09107, PID:152843, GB:U09891, and PID:497352; identified by sequence similarity; hypothetical protein 3212214 1042677 PP_2815 Pseudomonas putida KT2440 hypothetical protein NP_744959.1 3210961 D 160488 CDS NP_744960.1 26989535 1042695 complement(3212273..3212839) 1 NC_002947.3 similar to GB:M17589, GB:M24787, GB:M24788, GB:M24791, GB:M24789, GB:M18114, GB:M20912, GB:M20911, SP:P07101, PID:339681, PID:37127, PID:548155, PID:548156, and PID:556224; identified by sequence similarity; NfxB family transcriptional regulator 3212839 1042695 PP_2816 Pseudomonas putida KT2440 NfxB family transcriptional regulator NP_744960.1 3212273 R 160488 CDS NP_744961.1 26989536 1042696 3212931..3214067 1 NC_002947.3 similar to GB:U12892, PID:530857, GB:U12892, and PID:530857; identified by sequence similarity; multidrug efflux RND membrane fusion protein MexC 3214067 mexC 1042696 mexC Pseudomonas putida KT2440 multidrug efflux RND membrane fusion protein MexC NP_744961.1 3212931 D 160488 CDS NP_744962.1 26989537 1042701 3214083..3217211 1 NC_002947.3 identified by match to PFAM protein family HMM PF04165; multidrug efflux RND transporter MexD 3217211 mexD 1042701 mexD Pseudomonas putida KT2440 multidrug efflux RND transporter MexD NP_744962.1 3214083 D 160488 CDS NP_744963.1 26989538 1042702 3217208..3218614 1 NC_002947.3 identified by match to PFAM protein family HMM PF02321; outer membrane protein OprJ 3218614 oprJ 1042702 oprJ Pseudomonas putida KT2440 outer membrane protein OprJ NP_744963.1 3217208 D 160488 CDS NP_744964.1 26989539 1042689 complement(3218697..3219254) 1 NC_002947.3 similar to GB:M17589, GB:M24787, GB:M24788, GB:M24791, GB:M24789, GB:M18114, GB:M20912, GB:M20911, SP:P07101, PID:339681, PID:37127, PID:548155, PID:548156, and PID:556224; identified by sequence similarity; NfxB family transcriptional regulator 3219254 nfxB 1042689 nfxB Pseudomonas putida KT2440 NfxB family transcriptional regulator NP_744964.1 3218697 R 160488 CDS NP_744965.1 26989540 1042684 complement(3219432..3219836) 1 NC_002947.3 hypothetical protein 3219836 1042684 PP_2821 Pseudomonas putida KT2440 hypothetical protein NP_744965.1 3219432 R 160488 CDS NP_744966.1 26989541 1042690 3219827..3221053 1 NC_002947.3 hypothetical protein 3221053 1042690 PP_2822 Pseudomonas putida KT2440 hypothetical protein NP_744966.1 3219827 D 160488 CDS NP_744967.1 26989542 1042686 complement(3221038..3222690) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00672; methyl-accepting chemotaxis transducer 3222690 1042686 PP_2823 Pseudomonas putida KT2440 methyl-accepting chemotaxis transducer NP_744967.1 3221038 R 160488 CDS NP_744968.1 26989543 1042714 complement(3223250..3223930) 1 NC_002947.3 similar to GP:7228269; identified by sequence similarity; TetR family transcriptional regulator 3223930 1042714 PP_2824 Pseudomonas putida KT2440 TetR family transcriptional regulator NP_744968.1 3223250 R 160488 CDS NP_744969.1 26989544 1042697 complement(3224000..3224467) 1 NC_002947.3 similar to GP:6179516, GB:X06985, GB:M23041, GB:M23042, SP:P09601, PID:35173, and PID:557552; identified by sequence similarity; integrase 3224467 1042697 PP_2825 Pseudomonas putida KT2440 integrase NP_744969.1 3224000 R 160488 CDS NP_744970.1 26989545 1042691 complement(3224501..3225415) 1 NC_002947.3 similar to GP:7801208, and GP:3646369; identified by sequence similarity; transcriptional regulator MexT 3225415 mexT 1042691 mexT Pseudomonas putida KT2440 transcriptional regulator MexT NP_744970.1 3224501 R 160488 CDS NP_744971.1 26989546 1042713 3225622..3226644 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01751; zinc-containing alcohol dehydrogenase 3226644 1042713 PP_2827 Pseudomonas putida KT2440 zinc-containing alcohol dehydrogenase NP_744971.1 3225622 D 160488 CDS NP_744972.1 26989547 1042705 3227159..3228544 1 NC_002947.3 hypothetical protein 3228544 1042705 PP_2828 Pseudomonas putida KT2440 hypothetical protein NP_744972.1 3227159 D 160488 CDS NP_744973.1 26989548 1042698 3228541..3229899 1 NC_002947.3 identified by match to PFAM protein family HMM PF00392; GntR family transcriptional regulator 3229899 1042698 PP_2829 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_744973.1 3228541 D 160488 CDS NP_744974.1 26989549 1042693 complement(3230027..3231379) 1 NC_002947.3 similar to GB:L34058, SP:P55290, PID:1381790, PID:1381792, PID:506408, GB:L34058, SP:P55290, PID:1381790, PID:1381792, and PID:506408; identified by sequence similarity; major facilitator family transporter 3231379 1042693 PP_2830 Pseudomonas putida KT2440 major facilitator family transporter NP_744974.1 3230027 R 160488 CDS NP_744975.1 26989550 1042728 complement(3231395..3232630) 1 NC_002947.3 similar to GP:1150421; identified by sequence similarity; mandelate racemase 3232630 1042728 PP_2831 Pseudomonas putida KT2440 mandelate racemase NP_744975.1 3231395 R 160488 CDS NP_744976.1 26989551 1042730 3232810..3233757 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 3233757 1042730 PP_2832 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744976.1 3232810 D 160488 CDS NP_744977.1 26989552 1042700 3233785..3234756 1 NC_002947.3 similar to GP:9948229; identified by sequence similarity; LysR family transcriptional regulator 3234756 1042700 PP_2833 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_744977.1 3233785 D 160488 CDS NP_744978.1 26989553 1042715 3234903..3236444 1 NC_002947.3 similar to GP:10173103, GB:M25393, SP:P17706, and PID:804750; identified by sequence similarity; UxaA family hydrolase 3236444 1042715 PP_2834 Pseudomonas putida KT2440 UxaA family hydrolase NP_744978.1 3234903 D 160488 CDS NP_744979.1 26989554 1042704 3236504..3237538 1 NC_002947.3 identified by match to PFAM protein family HMM PF02615; Ldh family oxidoreductase 3237538 1042704 PP_2835 Pseudomonas putida KT2440 Ldh family oxidoreductase NP_744979.1 3236504 D 160488 CDS NP_744980.1 26989555 1042711 3237559..3238776 1 NC_002947.3 similar to GP:5881930; identified by sequence similarity; fumarylacetoacetate hydrolase 3238776 1042711 PP_2836 Pseudomonas putida KT2440 fumarylacetoacetate hydrolase NP_744980.1 3237559 D 160488 CDS NP_744981.1 26989556 1042738 3238867..3240177 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00881; major facilitator family transporter 3240177 1042738 PP_2837 Pseudomonas putida KT2440 major facilitator family transporter NP_744981.1 3238867 D 160488 CDS NP_744982.1 26989557 1042739 3240302..3241951 1 NC_002947.3 VRR-NUC domain-containing protein 3241951 1042739 PP_2838 Pseudomonas putida KT2440 VRR-NUC domain-containing protein NP_744982.1 3240302 D 160488 CDS NP_744983.1 26989558 1042716 3241921..3244209 1 NC_002947.3 similar to GP:9947855; identified by sequence similarity; DEAD/DEAH box helicase 3244209 1042716 PP_2839 Pseudomonas putida KT2440 DEAD/DEAH box helicase NP_744983.1 3241921 D 160488 CDS NP_744984.1 26989559 1042712 complement(3244310..3245491) 1 NC_002947.3 similar to GP:9948733; identified by sequence similarity; NnrS family protein 3245491 1042712 PP_2840 Pseudomonas putida KT2440 NnrS family protein NP_744984.1 3244310 R 160488 CDS NP_744985.1 26989560 1042731 3245743..3246621 1 NC_002947.3 similar to GP:2625019; identified by sequence similarity; phage integrase site specific recombinase 3246621 1042731 PP_2841 Pseudomonas putida KT2440 phage integrase site specific recombinase NP_744985.1 3245743 D 160488 CDS NP_744986.1 26989561 1042723 3246899..3247732 1 NC_002947.3 similar to SP:Q09063, GB:J03241, GB:X14885, GB:X14886, GB:X14887, GB:X14888, GB:X14889, GB:X14890, GB:X14891, SP:P10600, PID:1200236, PID:339552, PID:37096, and PID:553517; identified by sequence similarity; urease accessory protein UreD 3247732 ureD 1042723 ureD Pseudomonas putida KT2440 urease accessory protein UreD NP_744986.1 3246899 D 160488 CDS NP_744987.1 26989562 1042708 3247742..3248044 1 NC_002947.3 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma 3248044 ureA 1042708 ureA Pseudomonas putida KT2440 urease subunit gamma NP_744987.1 3247742 D 160488 CDS NP_744988.1 26989563 1042747 3248064..3248381 1 NC_002947.3 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active; urease subunit beta 3248381 ureB 1042747 ureB Pseudomonas putida KT2440 urease subunit beta NP_744988.1 3248064 D 160488 CDS NP_744989.1 26989564 1042749 3248378..3250081 1 NC_002947.3 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 3250081 ureC 1042749 ureC Pseudomonas putida KT2440 urease subunit alpha NP_744989.1 3248378 D 160488 CDS NP_744990.1 26989565 1042733 3250091..3250594 1 NC_002947.3 involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 3250594 ureE 1042733 ureE Pseudomonas putida KT2440 urease accessory protein UreE NP_744990.1 3250091 D 160488 CDS NP_744991.1 26989566 1042727 3250613..3251158 1 NC_002947.3 similar to GP:2340845, GB:L19521, and PID:310858; identified by sequence similarity; HupE/UreJ protein 3251158 ureJ 1042727 ureJ Pseudomonas putida KT2440 HupE/UreJ protein NP_744991.1 3250613 D 160488 CDS NP_744992.1 26989567 1042740 3251158..3251832 1 NC_002947.3 similar to GB:D13635, PID:285983, GB:D13635, and PID:285983; identified by sequence similarity; urease accessory protein UreF 3251832 ureF 1042740 ureF Pseudomonas putida KT2440 urease accessory protein UreF NP_744992.1 3251158 D 160488 CDS NP_744993.1 26989568 1042736 3251844..3252467 1 NC_002947.3 similar to GB:M27717, GB:M73716, GB:M73717, GB:M73718, GB:M73719, GB:M73720, GB:S40234, SP:P15088, PID:179934, and PID:187442; identified by sequence similarity; urease accessory protein UreG 3252467 ureG 1042736 ureG Pseudomonas putida KT2440 urease accessory protein UreG NP_744993.1 3251844 D 160488 CDS NP_744994.1 26989569 1042719 3252514..3252627 1 NC_002947.3 hypothetical protein 3252627 1042719 PP_2850 Pseudomonas putida KT2440 hypothetical protein NP_744994.1 3252514 D 160488 CDS NP_744995.1 26989570 1042761 complement(3252710..3253438) 1 NC_002947.3 similar to GP:9947291; identified by sequence similarity; hypothetical protein 3253438 1042761 PP_2851 Pseudomonas putida KT2440 hypothetical protein NP_744995.1 3252710 R 160488 CDS NP_744996.1 26989571 1042762 complement(3253533..3255734) 1 NC_002947.3 similar to GP:9947033, GB:J02694, GB:S56200, GB:M19508, GB:X15377, GB:M17170, GB:M17171, GB:M17172, GB:M17173, GB:M17174, GB:M17175, GB:M17176, SP:P05164, PID:188658, PID:188669, PID:189040, PID:2160397, PID:34719, PID:34722, PID:386956, and PID:412186; identified by sequence similarity; sulfatase 3255734 1042762 PP_2852 Pseudomonas putida KT2440 sulfatase NP_744996.1 3253533 R 160488 CDS NP_744997.1 26989572 1042744 complement(3255870..3257150) 1 NC_002947.3 similar to GP:9947949; identified by sequence similarity; hypothetical protein 3257150 1042744 PP_2853 Pseudomonas putida KT2440 hypothetical protein NP_744997.1 3255870 R 160488 CDS NP_744998.1 26989573 1042737 complement(3257197..3257949) 1 NC_002947.3 hypothetical protein 3257949 1042737 PP_2854 Pseudomonas putida KT2440 hypothetical protein NP_744998.1 3257197 R 160488 CDS NP_744999.1 26989574 1042759 complement(3257995..3258675) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03412; hypothetical protein 3258675 1042759 PP_2855 Pseudomonas putida KT2440 hypothetical protein NP_744999.1 3257995 R 160488 CDS NP_745000.1 26989575 1042745 complement(3258737..3260188) 1 NC_002947.3 similar to GP:9947952; identified by sequence similarity; hypothetical protein 3260188 1042745 PP_2856 Pseudomonas putida KT2440 hypothetical protein NP_745000.1 3258737 R 160488 CDS NP_745001.1 26989576 1042735 complement(3260238..3260816) 1 NC_002947.3 hypothetical protein 3260816 1042735 PP_2857 Pseudomonas putida KT2440 hypothetical protein NP_745001.1 3260238 R 160488 CDS NP_745002.1 26989577 1042753 complement(3260818..3261255) 1 NC_002947.3 hypothetical protein 3261255 1042753 PP_2858 Pseudomonas putida KT2440 hypothetical protein NP_745002.1 3260818 R 160488 CDS NP_745003.1 26989578 1042768 complement(3261553..3262122) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01526; hypothetical protein 3262122 1042768 PP_2859 Pseudomonas putida KT2440 hypothetical protein NP_745003.1 3261553 R 160488 CDS NP_745004.1 26989579 1042754 complement(3262119..3262685) 1 NC_002947.3 similar to GP:9947956; identified by sequence similarity; nicotinamide mononucleotide transporter 3262685 1042754 PP_2860 Pseudomonas putida KT2440 nicotinamide mononucleotide transporter NP_745004.1 3262119 R 160488 CDS NP_745005.1 26989580 1042742 complement(3262909..3264543) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer 3264543 1042742 PP_2861 Pseudomonas putida KT2440 methyl-accepting chemotaxis sensory transducer NP_745005.1 3262909 R 160488 CDS NP_745006.1 26989581 1042766 3264841..3265674 1 NC_002947.3 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase 3265674 uppP 1042766 uppP Pseudomonas putida KT2440 UDP pyrophosphate phosphatase NP_745006.1 3264841 D 160488 CDS NP_745007.1 26989582 1042758 3265703..3266080 1 NC_002947.3 similar to GP:9947958; identified by sequence similarity; hypothetical protein 3266080 1042758 PP_2863 Pseudomonas putida KT2440 hypothetical protein NP_745007.1 3265703 D 160488 CDS NP_745008.1 26989583 1042750 complement(3266139..3266510) 1 NC_002947.3 similar to GP:9947997, and GP:9947997; identified by sequence similarity; hypothetical protein 3266510 1042750 PP_2864 Pseudomonas putida KT2440 hypothetical protein NP_745008.1 3266139 R 160488 CDS NP_745009.1 26989584 1042779 complement(3266491..3267393) 1 NC_002947.3 similar to GP:9947959; identified by sequence similarity; LysR family transcriptional regulator 3267393 1042779 PP_2865 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745009.1 3266491 R 160488 CDS NP_745010.1 26989585 1042781 3267527..3268138 1 NC_002947.3 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 3268138 acpD 1042781 acpD Pseudomonas putida KT2440 azoreductase NP_745010.1 3267527 D 160488 CDS NP_745011.1 26989586 1042767 complement(3268207..3269409) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00070; pyridine nucleotide-disulfide oxidoreductase 3269409 1042767 PP_2867 Pseudomonas putida KT2440 pyridine nucleotide-disulfide oxidoreductase NP_745011.1 3268207 R 160488 CDS NP_745012.1 26989587 1042765 complement(3269490..3270089) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01381; Cro/CI family transcriptional regulator 3270089 1042765 PP_2868 Pseudomonas putida KT2440 Cro/CI family transcriptional regulator NP_745012.1 3269490 R 160488 CDS NP_745013.1 26989588 1042764 complement(3270129..3272081) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00137; NADH:flavin oxidoreductase 3272081 1042764 PP_2869 Pseudomonas putida KT2440 NADH:flavin oxidoreductase NP_745013.1 3270129 R 160488 CDS NP_745014.1 26989589 1042778 3272199..3273299 1 NC_002947.3 similar to GB:D10570, GB:M83215, GB:S60998, SP:Q01196, PID:1932820, PID:530135, PID:557639, PID:608133, PID:966995, PID:966997, and PID:966999; identified by sequence similarity; PotD/PotF family extracellular solute-binding protein 3273299 1042778 PP_2870 Pseudomonas putida KT2440 PotD/PotF family extracellular solute-binding protein NP_745014.1 3272199 D 160488 CDS NP_745015.1 26989590 1042763 3273322..3274077 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01086; aldolase 3274077 1042763 PP_2871 Pseudomonas putida KT2440 aldolase NP_745015.1 3273322 D 160488 CDS NP_745016.1 26989591 1042769 3274144..3275124 1 NC_002947.3 identified by match to PFAM protein family HMM PF00892; hypothetical protein 3275124 1042769 PP_2872 Pseudomonas putida KT2440 hypothetical protein NP_745016.1 3274144 D 160488 CDS NP_745017.1 26989592 1042790 3275195..3275515 1 NC_002947.3 similar to SP:Q02470, PID:149582, SP:Q02470, and PID:149582; identified by sequence similarity; hypothetical protein 3275515 1042790 PP_2873 Pseudomonas putida KT2440 hypothetical protein NP_745017.1 3275195 D 160488 CDS NP_745018.1 26989593 1042782 3275984..3276295 1 NC_002947.3 hypothetical protein 3276295 1042782 PP_2874 Pseudomonas putida KT2440 hypothetical protein NP_745018.1 3275984 D 160488 CDS NP_745019.1 26989594 1042773 complement(3276342..3276692) 1 NC_002947.3 hypothetical protein 3276692 1042773 PP_2875 Pseudomonas putida KT2440 hypothetical protein NP_745019.1 3276342 R 160488 CDS NP_745020.1 26989595 1042772 complement(3276975..3278117) 1 NC_002947.3 similar to GB:L10338, GB:L16242, SP:Q07699, PID:307415, PID:450603, and PID:619592; identified by sequence similarity; beta-lactamase 3278117 ampC 1042772 ampC Pseudomonas putida KT2440 beta-lactamase NP_745020.1 3276975 R 160488 CDS NP_745021.1 26989596 1042788 3278224..3279225 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00832; bile acid/Na+ symporter family protein 3279225 1042788 PP_2877 Pseudomonas putida KT2440 bile acid/Na+ symporter family protein NP_745021.1 3278224 D 160488 CDS NP_745022.1 26989597 1042784 3279248..3279430 1 NC_002947.3 hypothetical protein 3279430 1042784 PP_2878 Pseudomonas putida KT2440 hypothetical protein NP_745022.1 3279248 D 160488 CDS NP_745023.1 26989598 1042777 complement(3279483..3280076) 1 NC_002947.3 hypothetical protein 3280076 1042777 PP_2879 Pseudomonas putida KT2440 hypothetical protein NP_745023.1 3279483 R 160488 CDS NP_745024.1 26989599 1042770 complement(3280063..3280626) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 3280626 1042770 PP_2880 Pseudomonas putida KT2440 TetR family transcriptional regulator NP_745024.1 3280063 R 160488 CDS NP_745025.1 26989600 1042802 3280716..3281447 1 NC_002947.3 identified by match to PFAM protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 3281447 1042802 PP_2881 Pseudomonas putida KT2440 short chain dehydrogenase/reductase oxidoreductase NP_745025.1 3280716 D 160488 CDS NP_745026.1 26989601 1042791 3281476..3282090 1 NC_002947.3 similar to SP:Q51948; identified by sequence similarity; DSBA oxidoreductase 3282090 1042791 PP_2882 Pseudomonas putida KT2440 DSBA oxidoreductase NP_745026.1 3281476 D 160488 CDS NP_745027.1 26989602 1042783 complement(3282063..3282362) 1 NC_002947.3 hypothetical protein 3282362 1042783 PP_2883 Pseudomonas putida KT2440 hypothetical protein NP_745027.1 3282063 R 160488 CDS NP_745028.1 26989603 1042808 complement(3282365..3282910) 1 NC_002947.3 similar to GB:J02732, SP:P12047, PID:143366, and GB:AL009126; identified by sequence similarity; XRE family transcriptional regulator 3282910 1042808 PP_2884 Pseudomonas putida KT2440 XRE family transcriptional regulator NP_745028.1 3282365 R 160488 CDS NP_745029.1 26989604 1042799 complement(3282992..3284221) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03600; major facilitator superfamily transporter 3284221 1042799 PP_2885 Pseudomonas putida KT2440 major facilitator superfamily transporter NP_745029.1 3282992 R 160488 CDS NP_745030.1 26989605 1042786 complement(3284279..3284812) 1 NC_002947.3 similar to GP:10178909, and SP:P08732; identified by sequence similarity; cytochrome B561 3284812 1042786 PP_2886 Pseudomonas putida KT2440 cytochrome B561 NP_745030.1 3284279 R 160488 CDS NP_745031.1 26989606 1042787 complement(3284809..3285861) 1 NC_002947.3 similar to GB:U07497, SP:P01621, SP:P04207, PID:470530, PID:470562, PID:470568, PID:470570, PID:470572, PID:470574, PID:470578, PID:470580, PID:470582, PID:470584, PID:470588, PID:470590, PID:553486, PID:560766, PID:619431, PID:619617, PID:619761, PID:619767, PID:619768, PID:619769, PID:681900, PID:722416, PID:722424, PID:722438, PID:722454, PID:722516, PID:722576, PID:722582, PID:722584, PID:860992, PID:860996, PID:860998, GB:U08839, GB:Z46797, SP:Q03405, PID:512464, PID:517198, and PID:533376; identified by sequence similarity; catalase domain-containing protein 3285861 1042787 PP_2887 Pseudomonas putida KT2440 catalase domain-containing protein NP_745031.1 3284809 R 160488 CDS NP_745032.1 26989607 1042803 3285986..3286507 1 NC_002947.3 similar to GP:8895713, and GP:8895713; identified by sequence similarity; ECF subfamily RNA polymerase sigma-24 subunit 3286507 1042803 PP_2888 Pseudomonas putida KT2440 ECF subfamily RNA polymerase sigma-24 subunit NP_745032.1 3285986 D 160488 CDS NP_745033.1 26989608 1042811 3286504..3287256 1 NC_002947.3 similar to GP:8895711, and GP:8895711; identified by sequence similarity; transmembrane anti-sigma factor 3287256 1042811 PP_2889 Pseudomonas putida KT2440 transmembrane anti-sigma factor NP_745033.1 3286504 D 160488 CDS NP_745034.1 26989609 1042796 complement(3287297..3288109) 1 NC_002947.3 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 3288109 xthA 1042796 xthA Pseudomonas putida KT2440 exonuclease III NP_745034.1 3287297 R 160488 CDS NP_745035.1 26989610 1042820 3288245..3288922 1 NC_002947.3 identified by match to PFAM protein family HMM PF00583; acetyltransferase 3288922 1042820 PP_2891 Pseudomonas putida KT2440 acetyltransferase NP_745035.1 3288245 D 160488 CDS NP_745036.1 26989611 1042821 3288966..3290717 1 NC_002947.3 identified by match to PFAM protein family HMM PF03561; surface antigen (D15) 3290717 1042821 PP_2892 Pseudomonas putida KT2440 surface antigen (D15) NP_745036.1 3288966 D 160488 CDS NP_745037.1 26989612 1042812 3290714..3294388 1 NC_002947.3 similar to GP:9948600; identified by sequence similarity; hypothetical protein 3294388 1042812 PP_2893 Pseudomonas putida KT2440 hypothetical protein NP_745037.1 3290714 D 160488 CDS NP_745038.1 26989613 1042805 complement(3294408..3294962) 1 NC_002947.3 hypothetical protein 3294962 1042805 PP_2894 Pseudomonas putida KT2440 hypothetical protein NP_745038.1 3294408 R 160488 CDS NP_745039.1 26989614 1042801 complement(3295038..3295682) 1 NC_002947.3 similar to SP:P27126, GB:M80599, PID:146654, PID:466767, GB:U00096, PID:1790059, SP:P27126, GB:M80599, PID:146654, PID:466767, GB:U00096, and PID:1790059; identified by sequence similarity; hypothetical protein 3295682 1042801 PP_2895 Pseudomonas putida KT2440 hypothetical protein NP_745039.1 3295038 R 160488 CDS NP_745040.1 26989615 1042800 complement(3295748..3296128) 1 NC_002947.3 hypothetical protein 3296128 1042800 PP_2896 Pseudomonas putida KT2440 hypothetical protein NP_745040.1 3295748 R 160488 CDS NP_745041.1 26989616 1042829 3296149..3296808 1 NC_002947.3 hypothetical protein 3296808 1042829 PP_2897 Pseudomonas putida KT2440 hypothetical protein NP_745041.1 3296149 D 160488 CDS NP_745042.1 26989617 1042824 complement(3296380..3296871) 1 NC_002947.3 hypothetical protein 3296871 1042824 PP_2898 Pseudomonas putida KT2440 hypothetical protein NP_745042.1 3296380 R 160488 CDS NP_745043.1 26989618 1042830 3296990..3297178 1 NC_002947.3 hypothetical protein 3297178 1042830 PP_2899 Pseudomonas putida KT2440 hypothetical protein NP_745043.1 3296990 D 160488 CDS NP_745044.1 26989619 1042831 complement(3297215..3297589) 1 NC_002947.3 hypothetical protein 3297589 1042831 PP_2900 Pseudomonas putida KT2440 hypothetical protein NP_745044.1 3297215 R 160488 CDS NP_745045.1 26989620 1042814 3297781..3300099 1 NC_002947.3 similar to GB:X52138, GB:M36072, GB:X06705, GB:X61923, SP:P11518, PID:337495, PID:34203, PID:35512, and PID:36647; identified by sequence similarity; penicillin amidase 3300099 1042814 PP_2901 Pseudomonas putida KT2440 penicillin amidase NP_745045.1 3297781 D 160488 CDS NP_745046.1 26989621 1042854 complement(3300181..3300903) 1 NC_002947.3 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 3300903 1042854 PP_2902 Pseudomonas putida KT2440 UDP-2,3-diacylglucosamine hydrolase NP_745046.1 3300181 R 160488 CDS NP_745047.1 26989622 1042807 complement(3300900..3301400) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase B 3301400 ppiB 1042807 ppiB Pseudomonas putida KT2440 peptidyl-prolyl cis-trans isomerase B NP_745047.1 3300900 R 160488 CDS NP_745048.1 26989623 1042815 3301649..3303352 1 NC_002947.3 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 3303352 glnS 1042815 glnS Pseudomonas putida KT2440 glutaminyl-tRNA synthetase NP_745048.1 3301649 D 160488 CDS NP_745049.1 26989624 1042809 3303362..3304744 1 NC_002947.3 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 3304744 cysS 1042809 cysS Pseudomonas putida KT2440 cysteinyl-tRNA synthetase NP_745049.1 3303362 D 160488 CDS NP_745050.1 26989625 1042842 complement(3304776..3306167) 1 NC_002947.3 similar to GB:L31579, and PID:468364; identified by sequence similarity; integral membrane sensor signal transduction histidine kinase 3306167 1042842 PP_2906 Pseudomonas putida KT2440 integral membrane sensor signal transduction histidine kinase NP_745050.1 3304776 R 160488 CDS NP_745051.1 26989626 1042845 complement(3306145..3306825) 1 NC_002947.3 similar to GB:L31579, and PID:468364; identified by sequence similarity; winged helix family two component transcriptional regulator 3306825 1042845 PP_2907 Pseudomonas putida KT2440 winged helix family two component transcriptional regulator NP_745051.1 3306145 R 160488 CDS NP_745052.1 26989627 1042832 complement(3306900..3307595) 1 NC_002947.3 regulator of gab gene expression; DNA-binding transcriptional regulator CsiR 3307595 1042832 PP_2908 Pseudomonas putida KT2440 DNA-binding transcriptional regulator CsiR NP_745052.1 3306900 R 160488 CDS NP_745053.1 26989628 1042846 3307791..3308768 1 NC_002947.3 in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution; hypothetical protein 3308768 1042846 PP_2909 Pseudomonas putida KT2440 hypothetical protein NP_745053.1 3307791 D 160488 CDS NP_745054.1 26989629 1042825 3308883..3310133 1 NC_002947.3 catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase 3310133 1042825 PP_2910 Pseudomonas putida KT2440 hydroxyglutarate oxidase NP_745054.1 3308883 D 160488 CDS NP_745055.1 26989630 1042844 3310284..3311675 1 NC_002947.3 similar to GB:X53331, GB:X07362, GB:M55270, GB:M58549, SP:P08493, PID:187591, PID:187593, PID:34614, and PID:34618; identified by sequence similarity; GABA permease 3311675 1042844 PP_2911 Pseudomonas putida KT2440 GABA permease NP_745055.1 3310284 D 160488 CDS NP_745056.1 26989631 1042827 3311763..3312656 1 NC_002947.3 identified by match to PFAM protein family HMM PF01163; hypothetical protein 3312656 1042827 PP_2912 Pseudomonas putida KT2440 hypothetical protein NP_745056.1 3311763 D 160488 CDS NP_745057.1 26989632 1042819 3312818..3313792 1 NC_002947.3 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 3313792 hemB-1 1042819 hemB-1 Pseudomonas putida KT2440 delta-aminolevulinic acid dehydratase NP_745057.1 3312818 D 160488 CDS NP_745058.1 26989633 1042847 3313951..3315453 1 NC_002947.3 similar to GP:1661219; identified by sequence similarity; proline/glycine betaine transporter 3315453 proP 1042847 proP Pseudomonas putida KT2440 proline/glycine betaine transporter NP_745058.1 3313951 D 160488 CDS NP_745059.1 26989634 1042866 complement(3315454..3316155) 1 NC_002947.3 similar to GP:9946095; identified by sequence similarity; hypothetical protein 3316155 1042866 PP_2915 Pseudomonas putida KT2440 hypothetical protein NP_745059.1 3315454 R 160488 CDS NP_745060.1 26989635 1042834 complement(3316165..3316794) 1 NC_002947.3 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 3316794 ribE-2 1042834 ribE-2 Pseudomonas putida KT2440 riboflavin synthase subunit alpha NP_745060.1 3316165 R 160488 CDS NP_745061.1 26989636 1042892 complement(3316834..3316974) 1 NC_002947.3 hypothetical protein 3316974 1042892 PP_2917 Pseudomonas putida KT2440 hypothetical protein NP_745061.1 3316834 R 160488 CDS NP_745062.1 26989637 1042893 complement(3316967..3319033) 1 NC_002947.3 similar to GP:6724082, and GP:6724082; identified by sequence similarity; trehalose synthase 3319033 1042893 PP_2918 Pseudomonas putida KT2440 trehalose synthase NP_745062.1 3316967 R 160488 CDS NP_745063.1 26989638 1042855 complement(3319225..3320142) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 3320142 1042855 PP_2919 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745063.1 3319225 R 160488 CDS NP_745064.1 26989639 1042851 3320263..3321021 1 NC_002947.3 identified by match to PFAM protein family HMM PF03746; hypothetical protein 3321021 1042851 PP_2920 Pseudomonas putida KT2440 hypothetical protein NP_745064.1 3320263 D 160488 CDS NP_745065.1 26989640 1042840 3321060..3322001 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00370; allophanate hydrolase subunit 1 3322001 1042840 PP_2921 Pseudomonas putida KT2440 allophanate hydrolase subunit 1 NP_745065.1 3321060 D 160488 CDS NP_745066.1 26989641 1042908 3321998..3322969 1 NC_002947.3 identified by match to PFAM protein family HMM PF02626; urea amidolyase 3322969 1042908 PP_2922 Pseudomonas putida KT2440 urea amidolyase NP_745066.1 3321998 D 160488 CDS NP_745067.1 26989642 1042874 complement(3323032..3323889) 1 NC_002947.3 similar to GP:5918205, and GP:5918205; identified by sequence similarity; hypothetical protein 3323889 1042874 PP_2923 Pseudomonas putida KT2440 hypothetical protein NP_745067.1 3323032 R 160488 CDS NP_745068.1 26989643 1042878 complement(3323880..3325130) 1 NC_002947.3 similar to SP:P03805, GB:J01611, PID:145265, PID:41483, PID:536996, GB:U00096, PID:1790595, SP:P03805, GB:J01611, PID:145265, PID:41483, PID:536996, GB:U00096, and PID:1790595; identified by sequence similarity; radical SAM domain-containing protein 3325130 1042878 PP_2924 Pseudomonas putida KT2440 radical SAM domain-containing protein NP_745068.1 3323880 R 160488 CDS NP_745069.1 26989644 1042853 3325245..3326864 1 NC_002947.3 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 3326864 mqo-3 1042853 mqo-3 Pseudomonas putida KT2440 malate:quinone oxidoreductase NP_745069.1 3325245 D 160488 CDS NP_745070.1 26989645 1042906 complement(3326874..3328202) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00984; UDP-glucose dehydrogenase 3328202 1042906 PP_2926 Pseudomonas putida KT2440 UDP-glucose dehydrogenase NP_745070.1 3326874 R 160488 CDS NP_745071.1 26989646 1042902 3328447..3329493 1 NC_002947.3 identified by match to PFAM protein family HMM PF02390; hypothetical protein 3329493 1042902 PP_2927 Pseudomonas putida KT2440 hypothetical protein NP_745071.1 3328447 D 160488 CDS NP_745072.1 26989647 1042869 complement(3329624..3330868) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02896; saccharopine dehydrogenase 3330868 1042869 PP_2928 Pseudomonas putida KT2440 saccharopine dehydrogenase NP_745072.1 3329624 R 160488 CDS NP_745073.1 26989648 1042885 complement(3330901..3331998) 1 NC_002947.3 similar to GB:M80629, and PID:180492; identified by sequence similarity; carboxynorspermidine decarboxylase 3331998 nspC 1042885 nspC Pseudomonas putida KT2440 carboxynorspermidine decarboxylase NP_745073.1 3330901 R 160488 CDS NP_745074.1 26989649 1042915 complement(3332184..3333101) 1 NC_002947.3 similar to GP:57225, and SP:P17324; identified by sequence similarity; L-serine dehydratase 3333101 1042915 PP_2930 Pseudomonas putida KT2440 L-serine dehydratase NP_745074.1 3332184 R 160488 CDS NP_745075.1 26989650 1042912 complement(3333098..3333922) 1 NC_002947.3 similar to GP:5459226, and GP:5459226; identified by sequence similarity; hypothetical protein 3333922 1042912 PP_2931 Pseudomonas putida KT2440 hypothetical protein NP_745075.1 3333098 R 160488 CDS NP_745076.1 26989651 1042917 complement(3333855..3335558) 1 NC_002947.3 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 3335558 1042917 PP_2932 Pseudomonas putida KT2440 amidase NP_745076.1 3333855 R 160488 CDS NP_745077.1 26989652 1042918 complement(3335750..3336592) 1 NC_002947.3 YghU; B2989; one of eight glutathione transferases from E. coli; glutathione S-transferase 3336592 1042918 PP_2933 Pseudomonas putida KT2440 glutathione S-transferase NP_745077.1 3335750 R 160488 CDS NP_745078.1 26989653 1042901 3336794..3337840 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01738; hypothetical protein 3337840 1042901 PP_2934 Pseudomonas putida KT2440 hypothetical protein NP_745078.1 3336794 D 160488 CDS NP_745079.1 26989654 1042904 complement(3337802..3338995) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00083; major facilitator superfamily transporter 3338995 1042904 PP_2935 Pseudomonas putida KT2440 major facilitator superfamily transporter NP_745079.1 3337802 R 160488 CDS NP_745080.1 26989655 1042886 complement(3339238..3340824) 1 NC_002947.3 similar to GP:9947963; identified by sequence similarity; ABC transporter ATP-binding protein 3340824 1042886 PP_2936 Pseudomonas putida KT2440 ABC transporter ATP-binding protein NP_745080.1 3339238 R 160488 CDS NP_745081.1 26989656 1042898 complement(3340857..3341276) 1 NC_002947.3 similar to GP:13361683, GB:D26350, and PID:450469; identified by sequence similarity; integrase 3341276 1042898 PP_2937 Pseudomonas putida KT2440 integrase NP_745081.1 3340857 R 160488 CDS NP_745082.1 26989657 1042897 complement(3341452..3342138) 1 NC_002947.3 similar to GP:9657729; identified by sequence similarity; OsmC family protein 3342138 1042897 PP_2938 Pseudomonas putida KT2440 OsmC family protein NP_745082.1 3341452 R 160488 CDS NP_745083.1 26989658 1042925 complement(3342445..3342699) 1 NC_002947.3 similar to GP:4469318, and GP:4469318; identified by sequence similarity; hypothetical protein 3342699 1042925 PP_2939 Pseudomonas putida KT2440 hypothetical protein NP_745083.1 3342445 R 160488 CDS NP_745084.1 26989659 1042927 complement(3342719..3343003) 1 NC_002947.3 similar to SP:P46147, GB:M34482, GB:X74929, GB:M77025, GB:M26324, GB:M26512, GB:X12882, GB:M26513, GB:X74981, SP:P05787, GB:U76549, PID:181400, PID:181573, PID:307083, PID:400416, PID:400418, and PID:553163; identified by sequence similarity; hypothetical protein 3343003 1042927 PP_2940 Pseudomonas putida KT2440 hypothetical protein NP_745084.1 3342719 R 160488 CDS NP_745085.1 26989660 1042928 complement(3344340..3345125) 1 NC_002947.3 similar to GP:9187583, and GP:9187583; identified by sequence similarity; hypothetical protein 3345125 1042928 PP_2941 Pseudomonas putida KT2440 hypothetical protein NP_745085.1 3344340 R 160488 CDS NP_745086.1 26989661 1042929 complement(3345126..3346496) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00072; response regulator 3346496 1042929 PP_2942 Pseudomonas putida KT2440 response regulator NP_745086.1 3345126 R 160488 CDS NP_745087.1 26989662 1042919 3346695..3347693 1 NC_002947.3 identified by match to PFAM protein family HMM PF03150; cytochrome c551 peroxidase 3347693 1042919 PP_2943 Pseudomonas putida KT2440 cytochrome c551 peroxidase NP_745087.1 3346695 D 160488 CDS NP_745088.1 26989663 1042943 3347690..3349504 1 NC_002947.3 identified by match to PFAM protein family HMM PF02518; sensor histidine kinase 3349504 1042943 PP_2944 Pseudomonas putida KT2440 sensor histidine kinase NP_745088.1 3347690 D 160488 CDS NP_745089.1 26989664 1042914 3349387..3350904 1 NC_002947.3 identified by match to PFAM protein family HMM PF02518; sensor histidine kinase/response regulator 3350904 1042914 PP_2945 Pseudomonas putida KT2440 sensor histidine kinase/response regulator NP_745089.1 3349387 D 160488 CDS NP_745090.1 26989665 1042913 3351062..3351475 1 NC_002947.3 similar to GB:L04282, GB:U09851, PID:388319, and PID:495574; identified by sequence similarity; peptidyl-tRNA hydrolase domain-containing protein 3351475 1042913 PP_2946 Pseudomonas putida KT2440 peptidyl-tRNA hydrolase domain-containing protein NP_745090.1 3351062 D 160488 CDS NP_745091.1 26989666 1042940 3351736..3352107 1 NC_002947.3 transcriptional regulator MvaT, P16 subunit 3352107 1042940 PP_2947 Pseudomonas putida KT2440 transcriptional regulator MvaT, P16 subunit NP_745091.1 3351736 D 160488 CDS NP_745092.1 26989667 1042935 complement(3352249..3353631) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00155; GntR family transcriptional regulator 3353631 1042935 PP_2948 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_745092.1 3352249 R 160488 CDS NP_745093.1 26989668 1042930 3353753..3354619 1 NC_002947.3 identified by match to PFAM protein family HMM PF00892; hypothetical protein 3354619 1042930 PP_2949 Pseudomonas putida KT2440 hypothetical protein NP_745093.1 3353753 D 160488 CDS NP_745094.1 26989669 1042939 complement(3354732..3355208) 1 NC_002947.3 similar to GP:9951720; identified by sequence similarity; hypothetical protein 3355208 1042939 PP_2950 Pseudomonas putida KT2440 hypothetical protein NP_745094.1 3354732 R 160488 CDS NP_745095.1 26989670 1042944 complement(3355262..3355828) 1 NC_002947.3 similar to GP:3293540; identified by sequence similarity; TetR family transcriptional regulator 3355828 1042944 PP_2951 Pseudomonas putida KT2440 TetR family transcriptional regulator NP_745095.1 3355262 R 160488 CDS NP_745096.1 26989671 1042921 complement(3355954..3356844) 1 NC_002947.3 similar to GP:9949718; identified by sequence similarity; LysR family transcriptional regulator 3356844 1042921 PP_2952 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745096.1 3355954 R 160488 CDS NP_745097.1 26989672 1042922 3356950..3357957 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01751; zinc-containing alcohol dehydrogenase 3357957 1042922 PP_2953 Pseudomonas putida KT2440 zinc-containing alcohol dehydrogenase NP_745097.1 3356950 D 160488 CDS NP_745098.1 26989673 1042950 3358072..3358458 1 NC_002947.3 similar to SP:P28816, GB:J01830, PID:154849, GB:M69197, GB:X00442, GB:L29394, GB:K01763, GB:X00637, GB:X01793, GB:X01786, GB:X02206, GB:X01789, GB:X01791, GB:X00606, GB:M13908, GB:K00422, GB:M12387, GB:M10935, SP:P00737, SP:P00738, PID:1212947, PID:306880, and PID:758071; identified by sequence similarity; hypothetical protein 3358458 1042950 PP_2954 Pseudomonas putida KT2440 hypothetical protein NP_745098.1 3358072 D 160488 CDS NP_745099.1 26989674 1042952 complement(3358768..3359679) 1 NC_002947.3 similar to GB:L19084, SP:P33668, PID:304942, GB:U00096, PID:1773180, and PID:1786707; identified by sequence similarity; magnesium/cobalt transporter CorA family protein 3359679 1042952 PP_2955 Pseudomonas putida KT2440 magnesium/cobalt transporter CorA family protein NP_745099.1 3358768 R 160488 CDS NP_745100.1 26989675 1042955 complement(3359683..3361263) 1 NC_002947.3 similar to GB:X57130, and PID:296288; identified by sequence similarity; ribosomal protein S6 modification protein-like protein 3361263 1042955 PP_2956 Pseudomonas putida KT2440 ribosomal protein S6 modification protein-like protein NP_745100.1 3359683 R 160488 CDS NP_745101.1 26989676 1042948 3361358..3362452 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01575; acetyltransferase 3362452 1042948 PP_2957 Pseudomonas putida KT2440 acetyltransferase NP_745101.1 3361358 D 160488 CDS NP_745102.1 26989677 1042977 complement(3362544..3362798) 1 NC_002947.3 similar to SP:P37687; identified by sequence similarity; glutaredoxin 3362798 1042977 PP_2958 Pseudomonas putida KT2440 glutaredoxin NP_745102.1 3362544 R 160488 CDS NP_745103.1 26989678 1042957 complement(3362812..3363330) 1 NC_002947.3 similar to GB:X78031, SP:Q11130, PID:516293, PID:520464, and PID:520525; identified by sequence similarity; alkylhydroperoxidase 3363330 1042957 PP_2959 Pseudomonas putida KT2440 alkylhydroperoxidase NP_745103.1 3362812 R 160488 CDS NP_745104.1 26989679 1042933 3363361..3364281 1 NC_002947.3 similar to GP:9106236; identified by sequence similarity; AraC family transcriptional regulator 3364281 1042933 PP_2960 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_745104.1 3363361 D 160488 CDS NP_745105.1 26989680 1042963 complement(3364344..3365222) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 3365222 1042963 PP_2961 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745105.1 3364344 R 160488 CDS NP_745106.1 26989681 1042973 3365330..3366331 1 NC_002947.3 similar to GP:6808410; identified by sequence similarity; zinc-containing alcohol dehydrogenase 3366331 1042973 PP_2962 Pseudomonas putida KT2440 zinc-containing alcohol dehydrogenase NP_745106.1 3365330 D 160488 CDS NP_745107.1 26989682 1042956 complement(3366350..3366532) 1 NC_002947.3 hypothetical protein 3366532 1042956 PP_2963 Pseudomonas putida KT2440 hypothetical protein NP_745107.1 3366350 R 160488 CDS NP_745108.1 26989683 1042972 3366692..3369706 1 NC_002947.3 similar to GP:1495195, GB:U04735, SP:P48723, and PID:460148; identified by sequence similarity; Tn4652, transposase 3369706 tnpA 1042972 tnpA Pseudomonas putida KT2440 Tn4652, transposase NP_745108.1 3366692 D 160488 CDS NP_745109.1 26989684 1042991 3369715..3370077 1 NC_002947.3 similar to GP:3805951, and GP:6625482; identified by sequence similarity; Tn4652, tnpA repressor protein TnpC 3370077 1042991 PP_2965 Pseudomonas putida KT2440 Tn4652, tnpA repressor protein TnpC NP_745109.1 3369715 D 160488 CDS NP_745110.1 26989685 1042975 complement(3370094..3370264) 1 NC_002947.3 hypothetical protein 3370264 1042975 PP_2966 Pseudomonas putida KT2440 hypothetical protein NP_745110.1 3370094 R 160488 CDS NP_745111.1 26989686 1042942 complement(3370469..3370633) 1 NC_002947.3 similar to GP:7363298; identified by sequence similarity; hypothetical protein 3370633 1042942 PP_2967 Pseudomonas putida KT2440 hypothetical protein NP_745111.1 3370469 R 160488 CDS NP_745112.1 26989687 1042984 complement(3370638..3371771) 1 NC_002947.3 similar to SP:P18021, SP:P06615, GB:X04967, PID:144169, PID:147038, SP:P18021, SP:P06615, GB:X04967, PID:144169, and PID:147038; identified by sequence similarity; hypothetical protein 3371771 1042984 PP_2968 Pseudomonas putida KT2440 hypothetical protein NP_745112.1 3370638 R 160488 CDS NP_745113.1 26989688 1042982 complement(3371782..3372069) 1 NC_002947.3 similar to SP:P09123, PID:452398, GB:U04815, GB:U04818, GB:U04824, GB:U04816, GB:U04817, SP:P21127, PID:189481, PID:507158, PID:507160, PID:507162, PID:507164, PID:507166, PID:507168, PID:507427, and PID:507429; identified by sequence similarity; hypothetical protein 3372069 1042982 PP_2969 Pseudomonas putida KT2440 hypothetical protein NP_745113.1 3371782 R 160488 CDS NP_745114.1 26989689 1042978 3372188..3372547 1 NC_002947.3 hypothetical protein 3372547 1042978 PP_2970 Pseudomonas putida KT2440 hypothetical protein NP_745114.1 3372188 D 160488 CDS NP_745115.1 26989690 1042988 complement(3372839..3373681) 1 NC_002947.3 similar to GB:Z11584, GB:Z11583, GB:Z14227, GB:Z14229, GB:Z14228, GB:Z11584, GB:Z11583, GB:Z14227, GB:Z14229, and GB:Z14228; identified by sequence similarity; IS1246 transposase 3373681 1042988 PP_2971 Pseudomonas putida KT2440 IS1246 transposase NP_745115.1 3372839 R 160488 CDS NP_745116.1 26989691 1042992 3373712..3374011 1 NC_002947.3 hypothetical protein 3374011 1042992 PP_2972 Pseudomonas putida KT2440 hypothetical protein NP_745116.1 3373712 D 160488 CDS NP_745117.1 26989692 1042962 3374050..3374403 1 NC_002947.3 similar to SP:P00556; identified by sequence similarity; diacylglycerol kinase 3374403 dgkA-2 1042962 dgkA-2 Pseudomonas putida KT2440 diacylglycerol kinase NP_745117.1 3374050 D 160488 CDS NP_745118.1 26989693 1042965 3374438..3376090 1 NC_002947.3 hypothetical protein 3376090 1042965 PP_2974 Pseudomonas putida KT2440 hypothetical protein NP_745118.1 3374438 D 160488 CDS NP_745119.1 26989694 1043001 3376156..3376422 1 NC_002947.3 similar to GP:10880734, and GP:2645860; identified by sequence similarity; transposase 3376422 1043001 PP_2975 Pseudomonas putida KT2440 transposase NP_745119.1 3376156 D 160488 CDS NP_745120.1 26989695 1043003 3376570..3376881 1 NC_002947.3 similar to GP:5524528; identified by sequence similarity; Tn4652, transposase subunit A 3376881 1043003 PP_2976 Pseudomonas putida KT2440 Tn4652, transposase subunit A NP_745120.1 3376570 D 160488 CDS NP_745121.1 26989696 1042997 3376878..3377783 1 NC_002947.3 similar to GP:5524529; identified by sequence similarity; Tn4652, transposase subunit B 3377783 1042997 PP_2977 Pseudomonas putida KT2440 Tn4652, transposase subunit B NP_745121.1 3376878 D 160488 CDS NP_745122.1 26989697 1043000 3377949..3378350 1 NC_002947.3 hypothetical protein 3378350 1043000 PP_2978 Pseudomonas putida KT2440 hypothetical protein NP_745122.1 3377949 D 160488 CDS NP_745123.1 26989698 1043021 complement(3378299..3378727) 1 NC_002947.3 hypothetical protein 3378727 1043021 PP_2979 Pseudomonas putida KT2440 hypothetical protein NP_745123.1 3378299 R 160488 CDS NP_745124.1 26989699 1043005 complement(3378731..3378967) 1 NC_002947.3 similar to SP:P18539, PID:47224, SP:P18539, and PID:47224; identified by sequence similarity; hypothetical protein 3378967 1043005 PP_2980 Pseudomonas putida KT2440 hypothetical protein NP_745124.1 3378731 R 160488 CDS NP_745125.1 26989700 1043004 complement(3379174..3380145) 1 NC_002947.3 similar to GP:5524530; identified by sequence similarity; Tn4652, cointegrate resolution protein S 3380145 1043004 PP_2981 Pseudomonas putida KT2440 Tn4652, cointegrate resolution protein S NP_745125.1 3379174 R 160488 CDS NP_745126.1 26989701 1043020 3380326..3381324 1 NC_002947.3 similar to GP:5524531, and GP:5524531; identified by sequence similarity; Tn4652, cointegrate resolution protein T 3381324 1043020 PP_2982 Pseudomonas putida KT2440 Tn4652, cointegrate resolution protein T NP_745126.1 3380326 D 160488 CDS NP_745127.1 26989702 1043029 3381352..3382008 1 NC_002947.3 hypothetical protein 3382008 1043029 PP_2983 Pseudomonas putida KT2440 hypothetical protein NP_745127.1 3381352 D 160488 CDS NP_745128.1 26989703 1043006 3381989..3382468 1 NC_002947.3 hypothetical protein 3382468 1043006 PP_2984 Pseudomonas putida KT2440 hypothetical protein NP_745128.1 3381989 D 160488 CDS NP_745129.1 26989704 1043019 complement(3383517..3384062) 1 NC_002947.3 similar to GB:X14831, GB:J03858, GB:S71326, GB:M76741, GB:M76742, GB:M76743, GB:M76744, GB:D12502, GB:M72238, GB:D90311, GB:D90313, SP:P13688, PID:179435, PID:179437, PID:219499, and PID:219501; identified by sequence similarity; hypothetical protein 3384062 1043019 PP_2985 Pseudomonas putida KT2440 hypothetical protein NP_745129.1 3383517 R 160488 CDS NP_745130.1 26989705 1043053 complement(3384364..3385413) 1 NC_002947.3 similar to SP:P80064, and SP:P80064; identified by sequence similarity; oxidoreductase 3385413 1043053 PP_2986 Pseudomonas putida KT2440 oxidoreductase NP_745130.1 3384364 R 160488 CDS NP_745131.1 26989706 1043032 complement(3385614..3386177) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03551; hypothetical protein 3386177 1043032 PP_2987 Pseudomonas putida KT2440 hypothetical protein NP_745131.1 3385614 R 160488 CDS NP_745132.1 26989707 1042989 3386154..3387170 1 NC_002947.3 similar to GP:3293547; identified by sequence similarity; zinc-containing alcohol dehydrogenase 3387170 1042989 PP_2988 Pseudomonas putida KT2440 zinc-containing alcohol dehydrogenase NP_745132.1 3386154 D 160488 CDS NP_745133.1 26989708 1043048 3387217..3388011 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01500; short chain dehydrogenase/reductase oxidoreductase 3388011 1043048 PP_2989 Pseudomonas putida KT2440 short chain dehydrogenase/reductase oxidoreductase NP_745133.1 3387217 D 160488 CDS NP_745134.1 26989709 1043036 3388149..3388628 1 NC_002947.3 identified by match to PFAM protein family HMM PF00376; MerR family transcriptional regulator 3388628 1043036 PP_2990 Pseudomonas putida KT2440 MerR family transcriptional regulator NP_745134.1 3388149 D 160488 CDS NP_745135.1 26989710 1043028 complement(3388644..3389675) 1 NC_002947.3 hypothetical protein 3389675 1043028 PP_2991 Pseudomonas putida KT2440 hypothetical protein NP_745135.1 3388644 R 160488 CDS NP_745136.1 26989711 1043014 complement(3389685..3390506) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01382; hypothetical protein 3390506 1043014 PP_2992 Pseudomonas putida KT2440 hypothetical protein NP_745136.1 3389685 R 160488 CDS NP_745137.1 26989712 1043045 3390574..3390714 1 NC_002947.3 hypothetical protein 3390714 1043045 PP_2993 Pseudomonas putida KT2440 hypothetical protein NP_745137.1 3390574 D 160488 CDS NP_745138.1 26989713 1043071 3390788..3392044 1 NC_002947.3 identified by match to PFAM protein family HMM PF00724; NADH:flavin oxidoreductase 3392044 1043071 PP_2994 Pseudomonas putida KT2440 NADH:flavin oxidoreductase NP_745138.1 3390788 D 160488 CDS NP_745139.1 26989714 1043010 3392212..3392754 1 NC_002947.3 similar to GP:10173629, GB:L28824, GB:S80267, SP:P43405, PID:479013, PID:496900, and PID:515871; identified by sequence similarity; DNA topology modulation kinase FlaR 3392754 1043010 PP_2995 Pseudomonas putida KT2440 DNA topology modulation kinase FlaR NP_745139.1 3392212 D 160488 CDS NP_745140.1 26989715 1043078 complement(3392817..3393275) 1 NC_002947.3 hypothetical protein 3393275 1043078 PP_2996 Pseudomonas putida KT2440 hypothetical protein NP_745140.1 3392817 R 160488 CDS NP_745141.1 26989716 1043072 complement(3393504..3394403) 1 NC_002947.3 similar to GB:X56667, GB:X56668, SP:P22676, PID:29636, PID:695356, and PID:825634; identified by sequence similarity; LysR family transcriptional regulator 3394403 1043072 PP_2997 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745141.1 3393504 R 160488 CDS NP_745142.1 26989717 1043055 3394497..3395444 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00745; 2-dehydropantoate 2-reductase 3395444 1043055 PP_2998 Pseudomonas putida KT2440 2-dehydropantoate 2-reductase NP_745142.1 3394497 D 160488 CDS NP_745143.1 26989718 1043076 3395441..3395839 1 NC_002947.3 identified by match to PFAM protein family HMM PF00903; glyoxalase 3395839 1043076 PP_2999 Pseudomonas putida KT2440 glyoxalase NP_745143.1 3395441 D 160488 CDS NP_745144.1 26989719 1043111 3395836..3396291 1 NC_002947.3 similar to SP:P37961, PID:396223, and PID:551717; identified by sequence similarity; acyl dehydratase MaoC 3396291 1043111 PP_3000 Pseudomonas putida KT2440 acyl dehydratase MaoC NP_745144.1 3395836 D 160488 CDS NP_745145.1 26989720 1043080 3396288..3397520 1 NC_002947.3 identified by match to PFAM protein family HMM PF02515; CAIB/BAIF family protein 3397520 1043080 PP_3001 Pseudomonas putida KT2440 CAIB/BAIF family protein NP_745145.1 3396288 D 160488 CDS NP_745146.1 26989721 1043090 3397517..3398335 1 NC_002947.3 similar to GB:X57766, SP:P24347, PID:456257, and PID:987949; identified by sequence similarity; shikimate 5-dehydrogenase 3398335 aroE-2 1043090 aroE-2 Pseudomonas putida KT2440 shikimate 5-dehydrogenase NP_745146.1 3397517 D 160488 CDS NP_745147.1 26989722 1043031 3398340..3398777 1 NC_002947.3 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 3398777 aroQ-3 1043031 aroQ-3 Pseudomonas putida KT2440 3-dehydroquinate dehydratase NP_745147.1 3398340 D 160488 CDS NP_745148.1 26989723 1043093 3399019..3399276 1 NC_002947.3 hypothetical protein 3399276 1043093 PP_3004 Pseudomonas putida KT2440 hypothetical protein NP_745148.1 3399019 D 160488 CDS NP_745149.1 26989724 1043105 complement(3399329..3400030) 1 NC_002947.3 hypothetical protein 3400030 1043105 PP_3005 Pseudomonas putida KT2440 hypothetical protein NP_745149.1 3399329 R 160488 CDS NP_745150.1 26989725 1043082 complement(3400018..3400566) 1 NC_002947.3 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 3400566 1043082 PP_3006 Pseudomonas putida KT2440 RNA polymerase sigma factor NP_745150.1 3400018 R 160488 CDS NP_745151.1 26989726 1043098 complement(3400670..3401197) 1 NC_002947.3 hypothetical protein 3401197 1043098 PP_3007 Pseudomonas putida KT2440 hypothetical protein NP_745151.1 3400670 R 160488 CDS NP_745152.1 26989727 1043100 3401414..3401701 1 NC_002947.3 similar to GB:M17087, GB:M54968, GB:M35504, GB:M34904, GB:M35505, GB:K03209, SP:P01112, SP:P01118, PID:1335026, PID:1335027, PID:180594, PID:186764, PID:190910, PID:553519, PID:553633, PID:553635, PID:553636, and PID:825697; identified by sequence similarity; hypothetical protein 3401701 1043100 PP_3008 Pseudomonas putida KT2440 hypothetical protein NP_745152.1 3401414 D 160488 CDS NP_745153.1 26989728 1043102 3401810..3401908 1 NC_002947.3 hypothetical protein 3401908 1043102 PP_3009 Pseudomonas putida KT2440 hypothetical protein NP_745153.1 3401810 D 160488 CDS NP_745154.1 26989729 1043109 3402105..3402473 1 NC_002947.3 hypothetical protein 3402473 1043109 PP_3010 Pseudomonas putida KT2440 hypothetical protein NP_745154.1 3402105 D 160488 CDS NP_745155.1 26989730 1043067 3402625..3402984 1 NC_002947.3 hypothetical protein 3402984 1043067 PP_3011 Pseudomonas putida KT2440 hypothetical protein NP_745155.1 3402625 D 160488 CDS NP_745156.1 26989731 1043106 3403038..3403166 1 NC_002947.3 hypothetical protein 3403166 1043106 PP_3012 Pseudomonas putida KT2440 hypothetical protein NP_745156.1 3403038 D 160488 CDS NP_745157.1 26989732 1043183 complement(3403210..3403461) 1 NC_002947.3 hypothetical protein 3403461 1043183 PP_3013 Pseudomonas putida KT2440 hypothetical protein NP_745157.1 3403210 R 160488 CDS NP_745158.1 26989733 1043145 3403580..3403939 1 NC_002947.3 hypothetical protein 3403939 1043145 PP_3014 Pseudomonas putida KT2440 hypothetical protein NP_745158.1 3403580 D 160488 CDS NP_745159.1 26989734 1043135 3404307..3404510 1 NC_002947.3 identified by match to PFAM protein family HMM PF00501; medium chain acyl-CoA ligase 3404510 1043135 PP_3015 Pseudomonas putida KT2440 medium chain acyl-CoA ligase NP_745159.1 3404307 D 160488 CDS NP_745160.1 26989735 1043136 3404647..3405480 1 NC_002947.3 similar to GB:X53586, GB:S66196, GB:X59512, SP:P23229, PID:33942, PID:33944, GB:K01884, SP:P01124, and PID:179498; identified by sequence similarity; lipopolysaccharide core biosynthesis protein 3405480 1043136 PP_3016 Pseudomonas putida KT2440 lipopolysaccharide core biosynthesis protein NP_745160.1 3404647 D 160488 CDS NP_745161.1 26989736 1043157 3405551..3406051 1 NC_002947.3 similar to GP:7385145; identified by sequence similarity; methylated-DNA--protein-cysteine methyltransferase 3406051 ogt 1043157 ogt Pseudomonas putida KT2440 methylated-DNA--protein-cysteine methyltransferase NP_745161.1 3405551 D 160488 CDS NP_745162.1 26989737 1043149 complement(3406056..3406298) 1 NC_002947.3 hypothetical protein 3406298 1043149 PP_3018 Pseudomonas putida KT2440 hypothetical protein NP_745162.1 3406056 R 160488 CDS NP_745163.1 26989738 1043089 complement(3406295..3407038) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00795; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3407038 1043089 PP_3019 Pseudomonas putida KT2440 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase NP_745163.1 3406295 R 160488 CDS NP_745164.1 26989739 1043234 3407253..3407978 1 NC_002947.3 similar to SP:Q05528, GB:X62073, PID:48986, SP:Q05528, GB:X62073, and PID:48986; identified by sequence similarity; serine/threonine protein phosphatase 3407978 1043234 PP_3020 Pseudomonas putida KT2440 serine/threonine protein phosphatase NP_745164.1 3407253 D 160488 CDS NP_745165.1 26989740 1043200 complement(3407926..3408540) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01810; amino acid transporter LysE 3408540 1043200 PP_3021 Pseudomonas putida KT2440 amino acid transporter LysE NP_745165.1 3407926 R 160488 CDS NP_745166.1 26989741 1043167 complement(3408622..3409431) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 3409431 1043167 PP_3022 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_745166.1 3408622 R 160488 CDS NP_745167.1 26989742 1043158 3409505..3409939 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00949; amino acid efflux protein 3409939 1043158 PP_3023 Pseudomonas putida KT2440 amino acid efflux protein NP_745167.1 3409505 D 160488 CDS NP_745168.1 26989743 1043152 3409967..3411163 1 NC_002947.3 identified by match to PFAM protein family HMM PF02518; hypothetical protein 3411163 1043152 PP_3024 Pseudomonas putida KT2440 hypothetical protein NP_745168.1 3409967 D 160488 CDS NP_745169.1 26989744 1043148 complement(3412201..3412821) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01810; amino acid transporter LysE 3412821 1043148 PP_3025 Pseudomonas putida KT2440 amino acid transporter LysE NP_745169.1 3412201 R 160488 CDS NP_745170.1 26989745 1043197 3412988..3414613 1 NC_002947.3 similar to SP:Q01624, PID:46680, SP:Q01624, and PID:46680; identified by sequence similarity; phage recombinase 3414613 1043197 PP_3026 Pseudomonas putida KT2440 phage recombinase NP_745170.1 3412988 D 160488 CDS NP_745171.1 26989746 1043139 complement(3414886..3415104) 1 NC_002947.3 similar to GP:4063814; identified by sequence similarity; hypothetical protein 3415104 1043139 PP_3027 Pseudomonas putida KT2440 hypothetical protein NP_745171.1 3414886 R 160488 CDS NP_745172.1 26989747 1043166 complement(3415097..3415411) 1 NC_002947.3 hypothetical protein 3415411 1043166 PP_3028 Pseudomonas putida KT2440 hypothetical protein NP_745172.1 3415097 R 160488 CDS NP_745173.1 26989748 1043201 complement(3415408..3417237) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00145; DNA cytosine methyltransferase 3417237 1043201 PP_3029 Pseudomonas putida KT2440 DNA cytosine methyltransferase NP_745173.1 3415408 R 160488 CDS NP_745174.1 26989749 1043328 complement(3417234..3418037) 1 NC_002947.3 hypothetical protein 3418037 1043328 PP_3030 Pseudomonas putida KT2440 hypothetical protein NP_745174.1 3417234 R 160488 CDS NP_745175.1 26989750 1043173 complement(3418091..3418408) 1 NC_002947.3 similar to GB:M77836, SP:P32322, PID:189498, GB:M77836, SP:P32322, and PID:189498; identified by sequence similarity; pyocin R2_PP, transcriptional activator prtN 3418408 1043173 PP_3031 Pseudomonas putida KT2440 pyocin R2_PP, transcriptional activator prtN NP_745175.1 3418091 R 160488 CDS NP_745176.1 26989751 1043332 complement(3418567..3418857) 1 NC_002947.3 DNA-binding protein Roi-like protein 3418857 1043332 PP_3032 Pseudomonas putida KT2440 DNA-binding protein Roi-like protein NP_745176.1 3418567 R 160488 CDS NP_745177.1 26989752 1043214 complement(3419450..3420181) 1 NC_002947.3 See PMID: 11069649; PRF04-like; similar to GB:L04569, GB:M57971, GB:Z34811, GB:Z34812, GB:Z34821, GB:Z34822, GB:Z34809, GB:Z34810, GB:Z34813, GB:Z34814, GB:Z34815, GB:Z34816, GB:Z34817, GB:Z34818, GB:Z34819, GB:Z34820, GB:M57972, GB:M91370, GB:Z26294, GB:Z26295, PID:291895, PID:501073, PID:508183, PID:508185, PID:508187, PID:508189, PID:508191, PID:508193, PID:508195, PID:508197, PID:508199, PID:508201, PID:509048, PID:509068, PID:509168, PID:509178, PID:509341, and PID:509344; identified by sequence similarity; transcriptional repressor pyocin R2_PP 3420181 1043214 PP_3033 Pseudomonas putida KT2440 transcriptional repressor pyocin R2_PP NP_745177.1 3419450 R 160488 CDS NP_745178.1 26989753 1043195 3420260..3420523 1 NC_002947.3 regulatory protein 3420523 1043195 PP_3034 Pseudomonas putida KT2440 regulatory protein NP_745178.1 3420260 D 160488 CDS NP_745179.1 26989754 1043367 complement(3420434..3420607) 1 NC_002947.3 hypothetical protein 3420607 1043367 PP_3035 Pseudomonas putida KT2440 hypothetical protein NP_745179.1 3420434 R 160488 CDS NP_745180.1 26989755 1043368 3420970..3421149 1 NC_002947.3 hypothetical protein 3421149 1043368 PP_3036 Pseudomonas putida KT2440 hypothetical protein NP_745180.1 3420970 D 160488 CDS NP_745181.1 26989756 1043370 3421632..3421850 1 NC_002947.3 identified by match to PFAM protein family HMM PF01258; C4-type zinc finger DksA/TraR family protein 3421850 1043370 PP_3037 Pseudomonas putida KT2440 C4-type zinc finger DksA/TraR family protein NP_745181.1 3421632 D 160488 CDS NP_745182.1 26989757 1043338 3421840..3424050 1 NC_002947.3 See PMID: 11069649; PRF06-like; TraC domain-containing protein 3424050 1043338 PP_3038 Pseudomonas putida KT2440 TraC domain-containing protein NP_745182.1 3421840 D 160488 CDS NP_745183.1 26989758 1043382 3424047..3424409 1 NC_002947.3 See PMID: 11069649; PRF07; similar to GP:5725184; identified by sequence similarity; hypothetical protein 3424409 1043382 PP_3039 Pseudomonas putida KT2440 hypothetical protein NP_745183.1 3424047 D 160488 CDS NP_745184.1 26989759 1043235 3424921..3425268 1 NC_002947.3 See PMID: 11069649; PRF09; similar to GP:9946488, GP:5725153, and GP:5725153; identified by sequence similarity; pyocin R2_PP, holin 3425268 1043235 PP_3040 Pseudomonas putida KT2440 pyocin R2_PP, holin NP_745184.1 3424921 D 160488 CDS NP_745185.1 26989760 1043329 3425433..3426044 1 NC_002947.3 hypothetical protein 3426044 1043329 PP_3041 Pseudomonas putida KT2440 hypothetical protein NP_745185.1 3425433 D 160488 CDS NP_745186.1 26989761 1043380 3426049..3428085 1 NC_002947.3 similar to GP:6723244; identified by sequence similarity; terminase large subunit 3428085 1043380 PP_3042 Pseudomonas putida KT2440 terminase large subunit NP_745186.1 3426049 D 160488 CDS NP_745187.1 26989762 1043371 3428087..3428293 1 NC_002947.3 hypothetical protein 3428293 1043371 PP_3043 Pseudomonas putida KT2440 hypothetical protein NP_745187.1 3428087 D 160488 CDS NP_745188.1 26989763 1043375 3428290..3429783 1 NC_002947.3 similar to GP:6723246; identified by sequence similarity; lambda family phage portal protein 3429783 1043375 PP_3044 Pseudomonas putida KT2440 lambda family phage portal protein NP_745188.1 3428290 D 160488 CDS NP_745189.1 26989764 1043383 3429780..3430943 1 NC_002947.3 identified by match to PFAM protein family HMM PF00574; ClpP protease 3430943 1043383 PP_3045 Pseudomonas putida KT2440 ClpP protease NP_745189.1 3429780 D 160488 CDS NP_745190.1 26989765 1043369 3430946..3431293 1 NC_002947.3 similar to GP:311850; identified by sequence similarity; hypothetical protein 3431293 1043369 PP_3046 Pseudomonas putida KT2440 hypothetical protein NP_745190.1 3430946 D 160488 CDS NP_745191.1 26989766 1043358 3431355..3432350 1 NC_002947.3 similar to GP:6723249, GP:6723249, and GP:6723249; identified by sequence similarity; hypothetical protein 3432350 1043358 PP_3047 Pseudomonas putida KT2440 hypothetical protein NP_745191.1 3431355 D 160488 CDS NP_745192.1 26989767 1043366 3432347..3432667 1 NC_002947.3 hypothetical protein 3432667 1043366 PP_3048 Pseudomonas putida KT2440 hypothetical protein NP_745192.1 3432347 D 160488 CDS NP_745193.1 26989768 1043393 3432664..3433326 1 NC_002947.3 similar to GP:6723251; identified by sequence similarity; hypothetical protein 3433326 1043393 PP_3049 Pseudomonas putida KT2440 hypothetical protein NP_745193.1 3432664 D 160488 CDS NP_745194.1 26989769 1043388 3433319..3433849 1 NC_002947.3 See PMID: 11069649; PRF10; identified by Glimmer2; hypothetical protein 3433849 1043388 PP_3050 Pseudomonas putida KT2440 hypothetical protein NP_745194.1 3433319 D 160488 CDS NP_745195.1 26989770 1043395 3433846..3434448 1 NC_002947.3 See PMID: 11069649; PRF11; identified by match to TIGR protein family HMM TIGR01644; pyocin R2_PP 3434448 gpV 1043395 gpV Pseudomonas putida KT2440 pyocin R2_PP NP_745195.1 3433846 D 160488 CDS NP_745196.1 26989771 1043396 3434491..3434760 1 NC_002947.3 hypothetical protein 3434760 1043396 PP_3052 Pseudomonas putida KT2440 hypothetical protein NP_745196.1 3434491 D 160488 CDS NP_745197.1 26989772 1043378 3434763..3435089 1 NC_002947.3 See PMID: 11069649; PRF12; pyocin R2_PP, baseplate protein 3435089 gpW 1043378 gpW Pseudomonas putida KT2440 pyocin R2_PP, baseplate protein NP_745197.1 3434763 D 160488 CDS NP_745198.1 26989773 1043463 3435086..3436066 1 NC_002947.3 See PMID: 11069649; PRF13; similar to GP:5725158; identified by sequence similarity; pyocin R2_PP, baseplate/tail fiber protein 3436066 gpJ 1043463 gpJ Pseudomonas putida KT2440 pyocin R2_PP, baseplate/tail fiber protein NP_745198.1 3435086 D 160488 CDS NP_745199.1 26989774 1043377 3436063..3436875 1 NC_002947.3 See PMID: 11069649; PRF14; identified by match to TIGR protein family HMM TIGR01634; pyocin R2_PP, tail formation protein 3436875 gpI 1043377 gpI Pseudomonas putida KT2440 pyocin R2_PP, tail formation protein NP_745199.1 3436063 D 160488 CDS NP_745200.1 26989775 1043391 3436872..3437750 1 NC_002947.3 See PMID: 11069649; PRF15; similar to GB:X62539, PID:40033, SP:P02984, SP:P13477, GB:J01574, GB:X15856, GB:M31808, GB:X01162, GB:X02397, PID:144391, PID:144400, PID:41134, and PID:1333745; identified by sequence similarity; pyocin R2_PP, tail fiber protein 3437750 1043391 PP_3056 Pseudomonas putida KT2440 pyocin R2_PP, tail fiber protein NP_745200.1 3436872 D 160488 CDS NP_745201.1 26989776 1043430 3437757..3438497 1 NC_002947.3 hypothetical protein 3438497 1043430 PP_3057 Pseudomonas putida KT2440 hypothetical protein NP_745201.1 3437757 D 160488 CDS NP_745202.1 26989777 1043465 3438520..3438981 1 NC_002947.3 hypothetical protein 3438981 1043465 PP_3058 Pseudomonas putida KT2440 hypothetical protein NP_745202.1 3438520 D 160488 CDS NP_745203.1 26989778 1043394 3439076..3440242 1 NC_002947.3 See PMID: 11069649; PRF17; similar to GP:514392; identified by sequence similarity; pyocin R2_PP, tail sheath protein 3440242 gpFI 1043394 gpFI Pseudomonas putida KT2440 pyocin R2_PP, tail sheath protein NP_745203.1 3439076 D 160488 CDS NP_745204.1 26989779 1043381 3440255..3440764 1 NC_002947.3 See PMID: 11069649; PRF18; similar to PIR:JC5192, SP:P07129, GB:X05793, and PID:580822; identified by sequence similarity; pyocin R2_PP, tail tube protein 3440764 gpFII 1043381 gpFII Pseudomonas putida KT2440 pyocin R2_PP, tail tube protein NP_745204.1 3440255 D 160488 CDS NP_745205.1 26989780 1043390 3440810..3441106 1 NC_002947.3 See PMID: 11069649; PRF19; identified by Glimmer2; hypothetical protein 3441106 1043390 PP_3061 Pseudomonas putida KT2440 hypothetical protein NP_745205.1 3440810 D 160488 CDS NP_745206.1 26989781 1043420 3441239..3444508 1 NC_002947.3 See PMID: 11069649; PRF20; pyocin R2_PP, tail length determination protein 3444508 1043420 PP_3062 Pseudomonas putida KT2440 pyocin R2_PP, tail length determination protein NP_745206.1 3441239 D 160488 CDS NP_745207.1 26989782 1043597 3444518..3445363 1 NC_002947.3 See PMID: 11069649; PRF21; pyocin R2_PP, tail formation protein 3445363 gpU 1043597 gpU Pseudomonas putida KT2440 pyocin R2_PP, tail formation protein NP_745207.1 3444518 D 160488 CDS NP_745208.1 26989783 1043645 3445338..3445544 1 NC_002947.3 See PMID: 11069649; PRF22; pyocin R2_PP, tail component protein 3445544 gpX 1043645 gpX Pseudomonas putida KT2440 pyocin R2_PP, tail component protein NP_745208.1 3445338 D 160488 CDS NP_745209.1 26989784 1043649 3445604..3446647 1 NC_002947.3 See PMID: 11069649; PRF23; similar to GP:5725169; identified by sequence similarity; pyocin R2_PP, tail formation 3446647 gpD 1043649 gpD Pseudomonas putida KT2440 pyocin R2_PP, tail formation NP_745209.1 3445604 D 160488 CDS NP_745210.1 26989785 1043584 3446684..3447235 1 NC_002947.3 See PMID: 11069649; PRF24; identified by match to PFAM protein family HMM PF00182; pyocin R2_PP, lytic enzyme 3447235 1043584 PP_3066 Pseudomonas putida KT2440 pyocin R2_PP, lytic enzyme NP_745210.1 3446684 D 160488 CDS NP_745211.1 26989786 1043419 3448800..3450077 1 NC_002947.3 identified by match to PFAM protein family HMM PF01850; hypothetical protein 3450077 1043419 PP_3067 Pseudomonas putida KT2440 hypothetical protein NP_745211.1 3448800 D 160488 CDS NP_745212.1 26989787 1043402 3450778..3450969 1 NC_002947.3 hypothetical protein 3450969 1043402 PP_3068 Pseudomonas putida KT2440 hypothetical protein NP_745212.1 3450778 D 160488 CDS NP_745213.1 26989788 1043783 complement(3450966..3453443) 1 NC_002947.3 similar to GP:5107805; identified by sequence similarity; outer membrane autotransporter 3453443 1043783 PP_3069 Pseudomonas putida KT2440 outer membrane autotransporter NP_745213.1 3450966 R 160488 CDS NP_745214.1 26989789 1043788 complement(3453556..3453831) 1 NC_002947.3 similar to SP:P39159; identified by sequence similarity; PpiC-type peptidyl-prolyl cis-trans isomerase 3453831 ppiC-1 1043788 ppiC-1 Pseudomonas putida KT2440 PpiC-type peptidyl-prolyl cis-trans isomerase NP_745214.1 3453556 R 160488 CDS NP_745215.1 26989790 1043586 complement(3453935..3455887) 1 NC_002947.3 AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase 3455887 1043586 PP_3071 Pseudomonas putida KT2440 acetoacetyl-CoA synthetase NP_745215.1 3453935 R 160488 CDS NP_745216.1 26989791 1043453 complement(3455980..3456459) 1 NC_002947.3 serine protease inhibitor, inhibits trypsin and other proteases; ecotin 3456459 1043453 PP_3072 Pseudomonas putida KT2440 ecotin NP_745216.1 3455980 R 160488 CDS NP_745217.1 26989792 1043762 complement(3456515..3457285) 1 NC_002947.3 catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase 3457285 bdhA 1043762 bdhA Pseudomonas putida KT2440 3-hydroxybutyrate dehydrogenase NP_745217.1 3456515 R 160488 CDS NP_745218.1 26989793 1043479 complement(3457296..3458687) 1 NC_002947.3 similar to GP:9948006; identified by sequence similarity; citrate transporter 3458687 1043479 PP_3074 Pseudomonas putida KT2440 citrate transporter NP_745218.1 3457296 R 160488 CDS NP_745219.1 26989794 1043815 complement(3458913..3460358) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02954; Fis family transcriptional regulator 3460358 1043815 PP_3075 Pseudomonas putida KT2440 Fis family transcriptional regulator NP_745219.1 3458913 R 160488 CDS NP_745220.1 26989795 1043817 complement(3460355..3461371) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03605; binding-protein-dependent transport system inner membrane protein 3461371 1043817 PP_3076 Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_745220.1 3460355 R 160488 CDS NP_745221.1 26989796 1043775 complement(3461371..3462429) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00528; binding-protein-dependent transport system inner membrane protein 3462429 1043775 PP_3077 Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_745221.1 3461371 R 160488 CDS NP_745222.1 26989797 1043637 complement(3462426..3464354) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00496; ABC transporter substrate-binding protein 3464354 1043637 PP_3078 Pseudomonas putida KT2440 ABC transporter substrate-binding protein NP_745222.1 3462426 R 160488 CDS NP_745223.1 26989798 1043804 complement(3464368..3464649) 1 NC_002947.3 similar to SP:P39159; identified by sequence similarity; peptidyl-prolyl cis-trans isomerase 3464649 ppiC-2 1043804 ppiC-2 Pseudomonas putida KT2440 peptidyl-prolyl cis-trans isomerase NP_745223.1 3464368 R 160488 CDS NP_745224.1 26989799 1043781 complement(3464730..3465791) 1 NC_002947.3 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 3465791 aroF-2 1043781 aroF-2 Pseudomonas putida KT2440 phospho-2-dehydro-3-deoxyheptonate aldolase NP_745224.1 3464730 R 160488 CDS NP_745225.1 26989800 1043587 complement(3466346..3466822) 1 NC_002947.3 similar to SP:P33990, GB:X73561, GB:X80766, PID:405608, PID:677871, SP:P33990, GB:X73561, GB:X80766, PID:405608, and PID:677871; identified by sequence similarity; PEBP family protein 3466822 1043587 PP_3081 Pseudomonas putida KT2440 PEBP family protein NP_745225.1 3466346 R 160488 CDS NP_745226.1 26989801 1043809 complement(3467336..3468700) 1 NC_002947.3 similar to GP:9951161; identified by sequence similarity; major facilitator superfamily protein 3468700 1043809 PP_3082 Pseudomonas putida KT2440 major facilitator superfamily protein NP_745226.1 3467336 R 160488 CDS NP_745227.1 26989802 1043852 3469061..3469936 1 NC_002947.3 similar to GP:9947711, and GP:9947711; identified by sequence similarity; auxin efflux carrier 3469936 1043852 PP_3083 Pseudomonas putida KT2440 auxin efflux carrier NP_745227.1 3469061 D 160488 CDS NP_745228.1 26989803 1043808 complement(3470069..3472528) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00593; TonB-dependent siderophore receptor 3472528 1043808 PP_3084 Pseudomonas putida KT2440 TonB-dependent siderophore receptor NP_745228.1 3470069 R 160488 CDS NP_745229.1 26989804 1043782 complement(3472636..3473601) 1 NC_002947.3 transmembrane sensor 3473601 1043782 PP_3085 Pseudomonas putida KT2440 transmembrane sensor NP_745229.1 3472636 R 160488 CDS NP_745230.1 26989805 1043876 complement(3473598..3474104) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00776; RNA polymerase sigma-70 factor 3474104 1043876 PP_3086 Pseudomonas putida KT2440 RNA polymerase sigma-70 factor NP_745230.1 3473598 R 160488 CDS NP_745231.1 26989806 1043814 complement(3474193..3476709) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03584; excinuclease ABC subunit A 3476709 1043814 PP_3087 Pseudomonas putida KT2440 excinuclease ABC subunit A NP_745231.1 3474193 R 160488 CDS NP_745232.1 26989807 1043811 complement(3476877..3477962) 1 NC_002947.3 similar to GP:9945907; identified by sequence similarity; hypothetical protein 3477962 1043811 PP_3088 Pseudomonas putida KT2440 hypothetical protein NP_745232.1 3476877 R 160488 CDS NP_745233.1 26989808 1043778 complement(3478058..3478600) 1 NC_002947.3 hypothetical protein 3478600 1043778 PP_3089 Pseudomonas putida KT2440 hypothetical protein NP_745233.1 3478058 R 160488 CDS NP_745234.1 26989809 1043850 complement(3478720..3481215) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00691; OmpA domain-containing protein 3481215 1043850 PP_3090 Pseudomonas putida KT2440 OmpA domain-containing protein NP_745234.1 3478720 R 160488 CDS NP_745235.1 26989810 1043910 complement(3482117..3485920) 1 NC_002947.3 hypothetical protein 3485920 1043910 PP_3091 Pseudomonas putida KT2440 hypothetical protein NP_745235.1 3482117 R 160488 CDS NP_745236.1 26989811 1043941 complement(3485951..3486667) 1 NC_002947.3 hypothetical protein 3486667 1043941 PP_3092 Pseudomonas putida KT2440 hypothetical protein NP_745236.1 3485951 R 160488 CDS NP_745237.1 26989812 1043929 complement(3486664..3488007) 1 NC_002947.3 hypothetical protein 3488007 1043929 PP_3093 Pseudomonas putida KT2440 hypothetical protein NP_745237.1 3486664 R 160488 CDS NP_745238.1 26989813 1043871 complement(3488004..3488726) 1 NC_002947.3 hypothetical protein 3488726 1043871 PP_3094 Pseudomonas putida KT2440 hypothetical protein NP_745238.1 3488004 R 160488 CDS NP_745239.1 26989814 1043846 complement(3488751..3491387) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02861; chaperone-associated ATPase 3491387 1043846 PP_3095 Pseudomonas putida KT2440 chaperone-associated ATPase NP_745239.1 3488751 R 160488 CDS NP_745240.1 26989815 1043836 complement(3491345..3492415) 1 NC_002947.3 hypothetical protein 3492415 1043836 PP_3096 Pseudomonas putida KT2440 hypothetical protein NP_745240.1 3491345 R 160488 CDS NP_745241.1 26989816 1043944 complement(3492379..3494199) 1 NC_002947.3 hypothetical protein 3494199 1043944 PP_3097 Pseudomonas putida KT2440 hypothetical protein NP_745241.1 3492379 R 160488 CDS NP_745242.1 26989817 1043946 complement(3494199..3494681) 1 NC_002947.3 similar to GP:2708664, and GP:9945912; identified by sequence similarity; hypothetical protein 3494681 1043946 PP_3098 Pseudomonas putida KT2440 hypothetical protein NP_745242.1 3494199 R 160488 CDS NP_745243.1 26989818 1043952 complement(3494708..3496210) 1 NC_002947.3 similar to GP:2708666, and GP:9948404; identified by sequence similarity; hypothetical protein 3496210 1043952 PP_3099 Pseudomonas putida KT2440 hypothetical protein NP_745243.1 3494708 R 160488 CDS NP_745244.1 26989819 1043948 complement(3496225..3496800) 1 NC_002947.3 similar to GP:2708667, and GP:9948403; identified by sequence similarity; hypothetical protein 3496800 1043948 PP_3100 Pseudomonas putida KT2440 hypothetical protein NP_745244.1 3496225 R 160488 CDS NP_745245.1 26989820 1043932 3498998..3499780 1 NC_002947.3 identified by match to PFAM protein family HMM PF03747; ADP-ribosylglycohydrolase 3499780 1043932 PP_3101 Pseudomonas putida KT2440 ADP-ribosylglycohydrolase NP_745245.1 3498998 D 160488 CDS NP_745246.1 26989821 1043962 complement(3504272..3504568) 1 NC_002947.3 hypothetical protein 3504568 1043962 PP_3102 Pseudomonas putida KT2440 hypothetical protein NP_745246.1 3504272 R 160488 CDS NP_745247.1 26989822 1043877 complement(3504565..3505740) 1 NC_002947.3 hypothetical protein 3505740 1043877 PP_3103 Pseudomonas putida KT2440 hypothetical protein NP_745247.1 3504565 R 160488 CDS NP_745248.1 26989823 1043918 3506632..3507648 1 NC_002947.3 hypothetical protein 3507648 1043918 PP_3104 Pseudomonas putida KT2440 hypothetical protein NP_745248.1 3506632 D 160488 CDS NP_745249.1 26989824 1043956 3507649..3508344 1 NC_002947.3 hypothetical protein 3508344 1043956 PP_3105 Pseudomonas putida KT2440 hypothetical protein NP_745249.1 3507649 D 160488 CDS NP_745250.1 26989825 1043953 3508370..3510226 1 NC_002947.3 similar to GP:9945921; identified by sequence similarity; hypothetical protein 3510226 1043953 PP_3106 Pseudomonas putida KT2440 hypothetical protein NP_745250.1 3508370 D 160488 CDS NP_745251.1 26989826 1043957 3510802..3511323 1 NC_002947.3 similar to GP:9945920; identified by sequence similarity; hypothetical protein 3511323 1043957 PP_3107 Pseudomonas putida KT2440 hypothetical protein NP_745251.1 3510802 D 160488 CDS NP_745252.1 26989827 1043950 3511330..3515487 1 NC_002947.3 similar to GP:15130940; identified by sequence similarity; rhs-like protein 3515487 1043950 PP_3108 Pseudomonas putida KT2440 rhs-like protein NP_745252.1 3511330 D 160488 CDS NP_745253.1 26989828 1043955 3517881..3518312 1 NC_002947.3 hypothetical protein 3518312 1043955 PP_3109 Pseudomonas putida KT2440 hypothetical protein NP_745253.1 3517881 D 160488 CDS NP_745254.1 26989829 1043959 3521804..3522016 1 NC_002947.3 hypothetical protein 3522016 1043959 PP_3110 Pseudomonas putida KT2440 hypothetical protein NP_745254.1 3521804 D 160488 CDS NP_745255.1 26989830 1043940 3522156..3522260 1 NC_002947.3 hypothetical protein 3522260 1043940 PP_3111 Pseudomonas putida KT2440 hypothetical protein NP_745255.1 3522156 D 160488 CDS NP_745256.1 26989831 1043942 complement(3522417..3522845) 1 NC_002947.3 similar to GP:3785998; identified by sequence similarity; hypothetical protein 3522845 1043942 PP_3112 Pseudomonas putida KT2440 hypothetical protein NP_745256.1 3522417 R 160488 CDS NP_745257.1 26989832 1043963 3522907..3523266 1 NC_002947.3 similar to GP:5824138, and GP:8037784; identified by sequence similarity; ISPpu13, transposase Orf1 3523266 1043963 PP_3113 Pseudomonas putida KT2440 ISPpu13, transposase Orf1 NP_745257.1 3522907 D 160488 CDS NP_745258.1 26989833 1043961 3523285..3524817 1 NC_002947.3 similar to GP:5824139, and GP:8037785; identified by sequence similarity; ISPpu13, transposase Orf2 3524817 1043961 PP_3114 Pseudomonas putida KT2440 ISPpu13, transposase Orf2 NP_745258.1 3523285 D 160488 CDS NP_745259.1 26989834 1043965 3524832..3525146 1 NC_002947.3 similar to SP:P12059, and GB:X52093; identified by sequence similarity; ISPpu13, transposase Orf3 3525146 1043965 PP_3115 Pseudomonas putida KT2440 ISPpu13, transposase Orf3 NP_745259.1 3524832 D 160488 CDS NP_745260.1 26989835 1043964 3525552..3526160 1 NC_002947.3 Represses a number of genes involved in the response to DNA damage; LexA repressor 3526160 lexA-2 1043964 lexA-2 Pseudomonas putida KT2440 LexA repressor NP_745260.1 3525552 D 160488 CDS NP_745261.1 26989836 1043985 3526160..3526780 1 NC_002947.3 similar to GB:X07876, SP:P09544, PID:2337863, and PID:33971; identified by sequence similarity; hypothetical protein 3526780 1043985 PP_3117 Pseudomonas putida KT2440 hypothetical protein NP_745261.1 3526160 D 160488 CDS NP_745262.1 26989837 1043971 3526787..3528205 1 NC_002947.3 similar to GP:9946549, and GP:9946549; identified by sequence similarity; hypothetical protein 3528205 1043971 PP_3118 Pseudomonas putida KT2440 hypothetical protein NP_745262.1 3526787 D 160488 CDS NP_745263.2 161378129 1043951 3528202..3531282 1 NC_002947.3 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; error-prone DNA polymerase 3531282 dnaE2 1043951 dnaE2 Pseudomonas putida KT2440 error-prone DNA polymerase NP_745263.2 3528202 D 160488 CDS NP_745264.1 26989839 1043969 complement(3531465..3532226) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00248; aldo/keto reductase 3532226 1043969 PP_3120 Pseudomonas putida KT2440 aldo/keto reductase NP_745264.1 3531465 R 160488 CDS NP_745265.1 26989840 1046770 complement(3532274..3533179) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 3533179 1046770 PP_3121 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745265.1 3532274 R 160488 CDS NP_745266.1 26989841 1046775 3533320..3534018 1 NC_002947.3 similar to SP:Q01103; identified by sequence similarity; 3-oxoacid CoA-transferase subunit A 3534018 1046775 PP_3122 Pseudomonas putida KT2440 3-oxoacid CoA-transferase subunit A NP_745266.1 3533320 D 160488 CDS NP_745267.1 26989842 1046771 3534054..3534710 1 NC_002947.3 identified by match to PFAM protein family HMM PF01144; 3-oxoacid CoA-transferase subunit B 3534710 1046771 PP_3123 Pseudomonas putida KT2440 3-oxoacid CoA-transferase subunit B NP_745267.1 3534054 D 160488 CDS NP_745268.1 26989843 1046772 3534865..3536283 1 NC_002947.3 similar to SP:P17161, GB:X03147, and PID:43926; identified by sequence similarity; short-chain fatty acid transporter family protein 3536283 1046772 PP_3124 Pseudomonas putida KT2440 short-chain fatty acid transporter family protein NP_745268.1 3534865 D 160488 CDS NP_745269.1 26989844 1046773 3536360..3536902 1 NC_002947.3 identified by match to PFAM protein family HMM PF01381; Cro/CI family transcriptional regulator 3536902 1046773 PP_3125 Pseudomonas putida KT2440 Cro/CI family transcriptional regulator NP_745269.1 3536360 D 160488 CDS NP_745270.1 26989845 1046778 3537594..3538151 1 NC_002947.3 similar to GP:10946230; identified by sequence similarity; polysaccharide export protein 3538151 1046778 PP_3126 Pseudomonas putida KT2440 polysaccharide export protein NP_745270.1 3537594 D 160488 CDS NP_745271.1 26989846 1046774 3539311..3540849 1 NC_002947.3 similar to GB:X78084, PID:459545, and SP:Q59835; identified by sequence similarity; lipopolysaccharide biosynthesis protein 3540849 1046774 PP_3127 Pseudomonas putida KT2440 lipopolysaccharide biosynthesis protein NP_745271.1 3539311 D 160488 CDS NP_745272.1 26989847 1046776 3540885..3541691 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01007; protein-tyrosine kinase 3541691 1046776 PP_3128 Pseudomonas putida KT2440 protein-tyrosine kinase NP_745272.1 3540885 D 160488 CDS NP_745273.1 26989848 1046777 complement(3541754..3542719) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01746; UDP-glucose 4-epimerase 3542719 galE 1046777 galE Pseudomonas putida KT2440 UDP-glucose 4-epimerase NP_745273.1 3541754 R 160488 CDS NP_745274.1 26989849 1046792 complement(3542825..3545431) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01233; hypothetical protein 3545431 1046792 PP_3130 Pseudomonas putida KT2440 hypothetical protein NP_745274.1 3542825 R 160488 CDS NP_745275.1 26989850 1046782 complement(3545431..3546957) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03594; hypothetical protein 3546957 1046782 PP_3131 Pseudomonas putida KT2440 hypothetical protein NP_745275.1 3545431 R 160488 CDS NP_745276.1 26989851 1046779 3547053..3548429 1 NC_002947.3 identified by match to PFAM protein family HMM PF04290; polysaccharide biosynthesis protein 3548429 1046779 PP_3132 Pseudomonas putida KT2440 polysaccharide biosynthesis protein NP_745276.1 3547053 D 160488 CDS NP_745277.1 26989852 1046780 3548666..3550132 1 NC_002947.3 identified by match to PFAM protein family HMM PF00732; GMC oxidoreductase 3550132 1046780 PP_3133 Pseudomonas putida KT2440 GMC oxidoreductase NP_745277.1 3548666 D 160488 CDS NP_745278.1 26989853 1046781 3550149..3550844 1 NC_002947.3 identified by match to PFAM protein family HMM PF00132; transferase hexapeptide repeat containing protein 3550844 1046781 PP_3134 Pseudomonas putida KT2440 transferase hexapeptide repeat containing protein NP_745278.1 3550149 D 160488 CDS NP_745279.1 26989854 1046790 3550846..3551802 1 NC_002947.3 similar to GP:6688581; identified by sequence similarity; glycosyl transferase family protein 3551802 1046790 PP_3135 Pseudomonas putida KT2440 glycosyl transferase family protein NP_745279.1 3550846 D 160488 CDS NP_745280.1 26989855 1046783 3551811..3552335 1 NC_002947.3 similar to GB:M19399, SP:P11278, PID:155483, SP:P18353, PID:398536, and PID:1181551; identified by sequence similarity; serine O-acetyltransferase 3552335 1046783 PP_3136 Pseudomonas putida KT2440 serine O-acetyltransferase NP_745280.1 3551811 D 160488 CDS NP_745281.1 26989856 1046784 3552341..3553318 1 NC_002947.3 identified by match to PFAM protein family HMM PF00535; glycosyl transferase family protein 3553318 1046784 PP_3137 Pseudomonas putida KT2440 glycosyl transferase family protein NP_745281.1 3552341 D 160488 CDS NP_745282.1 26989857 1046785 3553331..3554332 1 NC_002947.3 similar to GP:2961072, and GP:2961072; identified by sequence similarity; VirK domain-containing protein 3554332 1046785 PP_3138 Pseudomonas putida KT2440 VirK domain-containing protein NP_745282.1 3553331 D 160488 CDS NP_745283.1 26989858 1046786 3554382..3555584 1 NC_002947.3 similar to GB:L15409, GB:X96489, GB:U54612, SP:P40337, PID:1235543, PID:1293147, and PID:2282064; identified by sequence similarity; glycoside hydrolase family protein 3555584 1046786 PP_3139 Pseudomonas putida KT2440 glycoside hydrolase family protein NP_745283.1 3554382 D 160488 CDS NP_745284.1 26989859 1046799 3555581..3556768 1 NC_002947.3 identified by match to PFAM protein family HMM PF00535; glycosyl transferase family protein 3556768 1046799 PP_3140 Pseudomonas putida KT2440 glycosyl transferase family protein NP_745284.1 3555581 D 160488 CDS NP_745285.1 26989860 1046787 3556768..3557520 1 NC_002947.3 similar to GB:M33562, SP:P19911, SP:P19912, PID:141906, PID:901867, GB:M83667, SP:P49716, and PID:189176; identified by sequence similarity; WecB/TagA/CpsF family glycosyl transferase 3557520 1046787 PP_3141 Pseudomonas putida KT2440 WecB/TagA/CpsF family glycosyl transferase NP_745285.1 3556768 D 160488 CDS NP_745286.1 26989861 1046788 3557699..3559120 1 NC_002947.3 identified by match to PFAM protein family HMM PF02397; sugar transferase 3559120 1046788 PP_3142 Pseudomonas putida KT2440 sugar transferase NP_745286.1 3557699 D 160488 CDS NP_745287.1 26989862 1046789 complement(3559155..3560096) 1 NC_002947.3 similar to GB:L17326, PID:306325, GB:L17326, and PID:306325; identified by sequence similarity; LysR family transcriptional regulator 3560096 1046789 PP_3143 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745287.1 3559155 R 160488 CDS NP_745288.1 26989863 1046791 3560243..3561619 1 NC_002947.3 similar to SP:P42630; identified by sequence similarity; iron-sulfur-dependent L-serine dehydratase 3561619 sda-3 1046791 sda-3 Pseudomonas putida KT2440 iron-sulfur-dependent L-serine dehydratase NP_745288.1 3560243 D 160488 CDS NP_745289.1 26989864 1046795 complement(3561707..3562528) 1 NC_002947.3 similar to SP:P05788, PID:40343, SP:P05788, and PID:40343; identified by sequence similarity; hypothetical protein 3562528 1046795 PP_3145 Pseudomonas putida KT2440 hypothetical protein NP_745289.1 3561707 R 160488 CDS NP_745290.1 26989865 1046793 complement(3562525..3563820) 1 NC_002947.3 similar to GB:X65867, GB:S60710, SP:P30566, PID:28904, and PID:28905; identified by sequence similarity; oxidoreductase 3563820 1046793 PP_3146 Pseudomonas putida KT2440 oxidoreductase NP_745290.1 3562525 R 160488 CDS NP_745291.1 26989866 1046794 complement(3563834..3564922) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02214; polyamine ABC transporter substrate-binding protein 3564922 1046794 PP_3147 Pseudomonas putida KT2440 polyamine ABC transporter substrate-binding protein NP_745291.1 3563834 R 160488 CDS NP_745292.1 26989867 1046798 complement(3565003..3566361) 1 NC_002947.3 similar to GB:L23248, and PID:495933; identified by sequence similarity; glutamine synthetase 3566361 1046798 PP_3148 Pseudomonas putida KT2440 glutamine synthetase NP_745292.1 3565003 R 160488 CDS NP_745293.1 26989868 1046796 3566395..3567444 1 NC_002947.3 similar to SP:Q9ZFU7; identified by sequence similarity; AraC family transcriptional regulator 3567444 1046796 PP_3149 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_745293.1 3566395 D 160488 CDS NP_745294.1 26989869 1046797 3567441..3569438 1 NC_002947.3 identified by match to PFAM protein family HMM PF00580; hypothetical protein 3569438 1046797 PP_3150 Pseudomonas putida KT2440 hypothetical protein NP_745294.1 3567441 D 160488 CDS NP_745295.1 26989870 1046801 complement(3569476..3570861) 1 NC_002947.3 similar to SP:P37828, and PID:901847; identified by sequence similarity; aldehyde dehydrogenase 3570861 1046801 PP_3151 Pseudomonas putida KT2440 aldehyde dehydrogenase NP_745295.1 3569476 R 160488 CDS NP_745296.1 26989871 1046817 3570969..3571835 1 NC_002947.3 similar to GP:11127717, SP:P19213, PID:2160260, and PID:2160261; identified by sequence similarity; LysR family transcriptional regulator 3571835 1046817 PP_3152 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745296.1 3570969 D 160488 CDS NP_745297.1 26989872 1046800 3571962..3572405 1 NC_002947.3 hypothetical protein 3572405 1046800 PP_3153 Pseudomonas putida KT2440 hypothetical protein NP_745297.1 3571962 D 160488 CDS NP_745298.1 26989873 1046802 3572512..3573180 1 NC_002947.3 hypothetical protein 3573180 1046802 PP_3154 Pseudomonas putida KT2440 hypothetical protein NP_745298.1 3572512 D 160488 CDS NP_745299.1 26989874 1046803 complement(3573212..3575341) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00593; outer membrane ferric siderophore receptor 3575341 1046803 PP_3155 Pseudomonas putida KT2440 outer membrane ferric siderophore receptor NP_745299.1 3573212 R 160488 CDS NP_745300.1 26989875 1046805 complement(3575596..3576486) 1 NC_002947.3 similar to SP:P03807; identified by sequence similarity; universal stress protein 3576486 1046805 PP_3156 Pseudomonas putida KT2440 universal stress protein NP_745300.1 3575596 R 160488 CDS NP_745301.1 26989876 1046804 3576612..3577403 1 NC_002947.3 similar to GP:10567379; identified by sequence similarity; inositol monophosphatase 3577403 1046804 PP_3157 Pseudomonas putida KT2440 inositol monophosphatase NP_745301.1 3576612 D 160488 CDS NP_745302.1 26989877 1046806 3577583..3578320 1 NC_002947.3 hypothetical protein 3578320 1046806 PP_3158 Pseudomonas putida KT2440 hypothetical protein NP_745302.1 3577583 D 160488 CDS NP_745303.1 26989878 1046810 3579863..3580819 1 NC_002947.3 similar to GP:7542435, and GP:7542435; identified by sequence similarity; AraC family transcriptional regulator 3580819 benR 1046810 benR Pseudomonas putida KT2440 AraC family transcriptional regulator NP_745303.1 3579863 D 160488 CDS NP_745304.1 26989879 1046809 3580902..3581843 1 NC_002947.3 hypothetical protein 3581843 1046809 PP_3160 Pseudomonas putida KT2440 hypothetical protein NP_745304.1 3580902 D 160488 CDS NP_745305.1 26989880 1046807 3581927..3583285 1 NC_002947.3 similar to GP:7542436, and GP:7542436; identified by sequence similarity; benzoate dioxygenase subunit alpha 3583285 benA 1046807 benA Pseudomonas putida KT2440 benzoate dioxygenase subunit alpha NP_745305.1 3581927 D 160488 CDS NP_745306.1 26989881 1046845 3583282..3583767 1 NC_002947.3 similar to GP:7542437, and GP:7542437; identified by sequence similarity; benzoate dioxygenase subunit beta 3583767 benB 1046845 benB Pseudomonas putida KT2440 benzoate dioxygenase subunit beta NP_745306.1 3583282 D 160488 CDS NP_745307.1 26989882 1046808 3583840..3584850 1 NC_002947.3 with BenAB catalyzes the formation of 2-hydro-1,2-dihydroxybenzoate from benzoate; oxidoreductase FAD/NAD(P)-binding domain-containing protein 3584850 benC 1046808 benC Pseudomonas putida KT2440 oxidoreductase FAD/NAD(P)-binding domain-containing protein NP_745307.1 3583840 D 160488 CDS NP_745308.1 26989883 1046818 3584985..3585746 1 NC_002947.3 catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase 3585746 benD 1046818 benD Pseudomonas putida KT2440 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase NP_745308.1 3584985 D 160488 CDS NP_745309.1 26989884 1046811 3585804..3587132 1 NC_002947.3 similar to GP:7542440, and GP:7542440; identified by sequence similarity; major facilitator superfamily transporter 3587132 benK 1046811 benK Pseudomonas putida KT2440 major facilitator superfamily transporter NP_745309.1 3585804 D 160488 CDS NP_745310.1 26989885 1046812 3587162..3588076 1 NC_002947.3 similar to GP:1008926, and GP:1008926; identified by sequence similarity; catechol 1,2-dioxygenase 3588076 1046812 PP_3166 Pseudomonas putida KT2440 catechol 1,2-dioxygenase NP_745310.1 3587162 D 160488 CDS NP_745311.1 26989886 1046813 3588151..3589422 1 NC_002947.3 similar to GP:7542441, and GP:7542441; identified by sequence similarity; benzoate transporter 3589422 benE-2 1046813 benE-2 Pseudomonas putida KT2440 benzoate transporter NP_745311.1 3588151 D 160488 CDS NP_745312.1 26989887 1046814 3589477..3590727 1 NC_002947.3 similar to GP:7542442, and GP:7542442; identified by sequence similarity; benzoate-specific porin 3590727 benF 1046814 benF Pseudomonas putida KT2440 benzoate-specific porin NP_745312.1 3589477 D 160488 CDS NP_745313.1 26989888 1046815 3590802..3591881 1 NC_002947.3 similar to GP:7542443; identified by sequence similarity; membrane-bound metal-dependent hydrolase 3591881 1046815 PP_3169 Pseudomonas putida KT2440 membrane-bound metal-dependent hydrolase NP_745313.1 3590802 D 160488 CDS NP_745314.1 26989889 1046816 3591950..3592861 1 NC_002947.3 similar to GP:3169721; identified by sequence similarity; LysR family transcriptional regulator 3592861 1046816 PP_3170 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745314.1 3591950 D 160488 CDS NP_745315.1 26989890 1046820 3592962..3593942 1 NC_002947.3 similar to GB:Y00281, SP:P04843, and PID:36053; identified by sequence similarity; luciferase 3593942 1046820 PP_3171 Pseudomonas putida KT2440 luciferase NP_745315.1 3592962 D 160488 CDS NP_745316.1 26989891 1046819 complement(3594018..3595439) 1 NC_002947.3 similar to GB:L01112, SP:P45375, PID:145016, and PID:1247706; identified by sequence similarity; group II intron-encoding maturase 3595439 1046819 PP_3172 Pseudomonas putida KT2440 group II intron-encoding maturase NP_745316.1 3594018 R 160488 CDS NP_745317.1 26989892 1046823 complement(3595905..3597002) 1 NC_002947.3 FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; N-ethylmaleimide reductase 3597002 nemA 1046823 nemA Pseudomonas putida KT2440 N-ethylmaleimide reductase NP_745317.1 3595905 R 160488 CDS NP_745318.1 26989893 1046821 complement(3597098..3598108) 1 NC_002947.3 similar to GB:U09564, and PID:507213; identified by sequence similarity; aldo/keto reductase 3598108 1046821 PP_3174 Pseudomonas putida KT2440 aldo/keto reductase NP_745318.1 3597098 R 160488 CDS NP_745319.1 26989894 1046822 complement(3598181..3599701) 1 NC_002947.3 similar to GB:L19299, SP:P41131, PID:304015, GB:X59066, GB:X65460, GB:D28126, GB:D14710, SP:P25705, PID:28938, PID:34468, PID:559317, and PID:559325; identified by sequence similarity; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3599701 1046822 PP_3175 Pseudomonas putida KT2440 FAD-dependent pyridine nucleotide-disulfide oxidoreductase NP_745319.1 3598181 R 160488 CDS NP_745320.1 26989895 1046824 complement(3599867..3601189) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00880; major facilitator family transporter 3601189 1046824 PP_3176 Pseudomonas putida KT2440 major facilitator family transporter NP_745320.1 3599867 R 160488 CDS NP_745321.1 26989896 1046827 3601281..3602450 1 NC_002947.3 identified by match to PFAM protein family HMM PF02954; CdaR family transcriptional regulator 3602450 1046827 PP_3177 Pseudomonas putida KT2440 CdaR family transcriptional regulator NP_745321.1 3601281 D 160488 CDS NP_745322.1 26989897 1046826 3602592..3603731 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00045; glycerate kinase 3603731 1046826 PP_3178 Pseudomonas putida KT2440 glycerate kinase NP_745322.1 3602592 D 160488 CDS NP_745323.1 26989898 1046825 complement(3603751..3604650) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 3604650 1046825 PP_3179 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745323.1 3603751 R 160488 CDS NP_745324.1 26989899 1046828 3604778..3605818 1 NC_002947.3 similar to GB:X63575, PID:2193884, GB:X63575, and PID:2193884; identified by sequence similarity; SMP-30/gluconolaconase/LRE domain-containing protein 3605818 1046828 PP_3180 Pseudomonas putida KT2440 SMP-30/gluconolaconase/LRE domain-containing protein NP_745324.1 3604778 D 160488 CDS NP_745325.1 26989900 1046829 complement(3605808..3606758) 1 NC_002947.3 similar to GP:5524530; identified by sequence similarity; phage integrase site specific recombinase 3606758 1046829 PP_3181 Pseudomonas putida KT2440 phage integrase site specific recombinase NP_745325.1 3605808 R 160488 CDS NP_745326.1 26989901 1046830 complement(3606849..3609113) 1 NC_002947.3 similar to GP:6759486; identified by sequence similarity; diguanylate cyclase 3609113 1046830 PP_3182 Pseudomonas putida KT2440 diguanylate cyclase NP_745326.1 3606849 R 160488 CDS NP_745327.1 26989902 1046831 complement(3609246..3610229) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02630; electron transport protein SCO1/SenC 3610229 1046831 PP_3183 Pseudomonas putida KT2440 electron transport protein SCO1/SenC NP_745327.1 3609246 R 160488 CDS NP_745328.1 26989903 1046833 complement(3610285..3613680) 1 NC_002947.3 hypothetical protein 3613680 1046833 PP_3184 Pseudomonas putida KT2440 hypothetical protein NP_745328.1 3610285 R 160488 CDS NP_745329.1 26989904 1046835 3614125..3614772 1 NC_002947.3 similar to GB:X04654, GB:X04654, GB:X06817, GB:X07402, GB:M57928, GB:M57929, GB:M57930, GB:M57931, GB:M57932, GB:M57933, GB:M57934, GB:M57935, GB:M57936, GB:M57937, GB:M57939, GB:X06811, GB:X06812, GB:X06813, GB:X06814, GB:X06815, GB:X06816, GB:X06818, GB:X07403, GB:X84841, GB:X06819, SP:P08621, PID:337445, PID:602021, PID:602023, PID:602025, PID:602027, PID:602344, PID:683580, PID:825725, PID:825726, PID:825727, and SP:P13061; identified by sequence similarity; TenA family transcriptional activator 3614772 pet18 1046835 pet18 Pseudomonas putida KT2440 TenA family transcriptional activator NP_745329.1 3614125 D 160488 CDS NP_745330.1 26989905 1046832 3614775..3615434 1 NC_002947.3 similar to GB:X04654, GB:X04654, GB:X06817, GB:X07402, GB:M57928, GB:M57929, GB:M57930, GB:M57931, GB:M57932, GB:M57933, GB:M57934, GB:M57935, GB:M57936, GB:M57937, GB:M57939, GB:X06811, GB:X06812, GB:X06813, GB:X06814, GB:X06815, GB:X06816, GB:X06818, GB:X07403, GB:X84841, GB:X06819, SP:P08621, PID:337445, PID:602021, PID:602023, PID:602025, PID:602027, PID:602344, PID:683580, PID:825725, PID:825726, PID:825727, GB:X04654, GB:X04654, GB:X06817, GB:X07402, GB:M57928, GB:M57929, GB:M57930, GB:M57931, GB:M57932, GB:M57933, GB:M57934, GB:M57935, GB:M57936, GB:M57937, GB:M57939, GB:X06811, GB:X06812, GB:X06813, GB:X06814, GB:X06815, GB:X06816, GB:X06818, GB:X07403, GB:X84841, GB:X06819, SP:P08621, PID:337445, PID:602021, PID:602023, PID:602025, PID:602027, PID:602344, PID:683580, PID:825725, PID:825726, and PID:825727; identified by sequence similarity; TenA family transcriptional activator 3615434 1046832 PP_3186 Pseudomonas putida KT2440 TenA family transcriptional activator NP_745330.1 3614775 D 160488 CDS NP_745331.1 26989906 1046834 3615663..3616928 1 NC_002947.3 identified by match to PFAM protein family HMM PF03591; cytosine permease 3616928 codB 1046834 codB Pseudomonas putida KT2440 cytosine permease NP_745331.1 3615663 D 160488 CDS NP_745332.1 26989907 1046837 3616973..3618142 1 NC_002947.3 similar to GP:7619788; identified by sequence similarity; hypothetical protein 3618142 1046837 PP_3188 Pseudomonas putida KT2440 hypothetical protein NP_745332.1 3616973 D 160488 CDS NP_745333.1 26989908 1046836 3618147..3619388 1 NC_002947.3 similar to SP:P25524; identified by sequence similarity; N-isopropylammelide isopropylaminohydrolase 3619388 codA 1046836 codA Pseudomonas putida KT2440 N-isopropylammelide isopropylaminohydrolase NP_745333.1 3618147 D 160488 CDS NP_745334.1 26989909 1046839 complement(3619402..3620349) 1 NC_002947.3 catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 3620349 1046839 PP_3190 Pseudomonas putida KT2440 ornithine cyclodeaminase NP_745334.1 3619402 R 160488 CDS NP_745335.1 26989910 1046838 complement(3620346..3621398) 1 NC_002947.3 similar to GB:Z29635, SP:P46374, and PID:455002; identified by sequence similarity; hypothetical protein 3621398 1046838 PP_3191 Pseudomonas putida KT2440 hypothetical protein NP_745335.1 3620346 R 160488 CDS NP_745336.1 26989911 1046840 complement(3621429..3622034) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02796; hypothetical protein 3622034 1046840 PP_3192 Pseudomonas putida KT2440 hypothetical protein NP_745336.1 3621429 R 160488 CDS NP_745337.1 26989912 1046841 complement(3622260..3622718) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03928; hypothetical protein 3622718 1046841 PP_3193 Pseudomonas putida KT2440 hypothetical protein NP_745337.1 3622260 R 160488 CDS NP_745338.1 26989913 1046842 complement(3622706..3624049) 1 NC_002947.3 similar to GP:10175557; identified by sequence similarity; hypothetical protein 3624049 1046842 PP_3194 Pseudomonas putida KT2440 hypothetical protein NP_745338.1 3622706 R 160488 CDS NP_745339.1 26989914 1046843 complement(3624222..3625484) 1 NC_002947.3 similar to GB:D16469, GB:X87195, PID:495097, GB:D16469, GB:X87195, and PID:495097; identified by sequence similarity; hypothetical protein 3625484 1046843 PP_3195 Pseudomonas putida KT2440 hypothetical protein NP_745339.1 3624222 R 160488 CDS NP_745340.1 26989915 1046846 complement(3625561..3626499) 1 NC_002947.3 similar to GB:X79440, SP:Q16798, and PID:535012; identified by sequence similarity; nodulation protein d1 3626499 1046846 PP_3196 Pseudomonas putida KT2440 nodulation protein d1 NP_745340.1 3625561 R 160488 CDS NP_745341.1 26989916 1046853 3626776..3627717 1 NC_002947.3 similar to GB:X54232, SP:P35052, and PID:31847; identified by sequence similarity; glyoxalase 3627717 1046853 PP_3197 Pseudomonas putida KT2440 glyoxalase NP_745341.1 3626776 D 160488 CDS NP_745342.1 26989917 1046844 3627730..3628068 1 NC_002947.3 identified by match to PFAM protein family HMM PF00355; (2Fe-2S) ferredoxin 3628068 1046844 PP_3198 Pseudomonas putida KT2440 (2Fe-2S) ferredoxin NP_745342.1 3627730 D 160488 CDS NP_745343.1 26989918 1046850 3628208..3629332 1 NC_002947.3 similar to SP:P23262; identified by sequence similarity; hypothetical protein 3629332 1046850 PP_3199 Pseudomonas putida KT2440 hypothetical protein NP_745343.1 3628208 D 160488 CDS NP_745344.1 26989919 1046847 3629377..3631089 1 NC_002947.3 similar to GP:3184126, and GP:3184126; identified by sequence similarity; hypothetical protein 3631089 1046847 PP_3200 Pseudomonas putida KT2440 hypothetical protein NP_745344.1 3629377 D 160488 CDS NP_745345.1 26989920 1046848 3632526..3633587 1 NC_002947.3 identified by match to PFAM protein family HMM PF02012; BNR repeat-containing protein 3633587 1046848 PP_3201 Pseudomonas putida KT2440 BNR repeat-containing protein NP_745345.1 3632526 D 160488 CDS NP_745346.1 26989921 1046849 3633600..3636080 1 NC_002947.3 similar to GP:9949187; identified by sequence similarity; transporter 3636080 1046849 PP_3202 Pseudomonas putida KT2440 transporter NP_745346.1 3633600 D 160488 CDS NP_745347.1 26989922 1046852 3636070..3637260 1 NC_002947.3 identified by match to PFAM protein family HMM PF04171; major facilitator family transporter 3637260 1046852 PP_3203 Pseudomonas putida KT2440 major facilitator family transporter NP_745347.1 3636070 D 160488 CDS NP_745348.1 26989923 1046855 3637418..3638005 1 NC_002947.3 hypothetical protein 3638005 1046855 PP_3204 Pseudomonas putida KT2440 hypothetical protein NP_745348.1 3637418 D 160488 CDS NP_745349.1 26989924 1046854 3638002..3638994 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01266; fumarylacetoacetate hydrolase 3638994 1046854 PP_3205 Pseudomonas putida KT2440 fumarylacetoacetate hydrolase NP_745349.1 3638002 D 160488 CDS NP_745350.1 26989925 1046851 3638985..3639971 1 NC_002947.3 similar to GB:M31651, GB:M27542, GB:X16351, GB:X05403, GB:X05792, GB:X16349, GB:X16350, SP:P04278, SP:P14689, PID:1335305, PID:36452, and PID:825718; identified by sequence similarity; hypothetical protein 3639971 1046851 PP_3206 Pseudomonas putida KT2440 hypothetical protein NP_745350.1 3638985 D 160488 CDS NP_745351.1 26989926 1046866 3639968..3640750 1 NC_002947.3 similar to GP:6018312; identified by sequence similarity; cyclase 3640750 1046866 PP_3207 Pseudomonas putida KT2440 cyclase NP_745351.1 3639968 D 160488 CDS NP_745352.1 26989927 1046856 complement(3640830..3641774) 1 NC_002947.3 similar to GB:U04619, PID:439982, and PID:1399285; identified by sequence similarity; Pdr/VanB family oxidoreductase 3641774 1046856 PP_3208 Pseudomonas putida KT2440 Pdr/VanB family oxidoreductase NP_745352.1 3640830 R 160488 CDS NP_745353.1 26989928 1046857 complement(3641771..3643201) 1 NC_002947.3 similar to GB:L22971, PID:413755, and SP:P52200; identified by sequence similarity; amidohydrolase 3643201 1046857 PP_3209 Pseudomonas putida KT2440 amidohydrolase NP_745353.1 3641771 R 160488 CDS NP_745354.1 26989929 1046858 complement(3643240..3644043) 1 NC_002947.3 similar to GB:L10328, SP:P06128, GB:K01992, GB:M24254, PID:147256, PID:290576, GB:U00096, and PID:2367271; identified by sequence similarity; ABC transporter permease 3644043 1046858 PP_3210 Pseudomonas putida KT2440 ABC transporter permease NP_745354.1 3643240 R 160488 CDS NP_745355.1 26989930 1046859 complement(3644054..3644902) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00005; ABC transporter ATP-binding protein 3644902 1046859 PP_3211 Pseudomonas putida KT2440 ABC transporter ATP-binding protein NP_745355.1 3644054 R 160488 CDS NP_745356.1 26989931 1046860 complement(3644968..3645993) 1 NC_002947.3 similar to GP:5669522; identified by sequence similarity; Rieske 2Fe-2S family protein 3645993 1046860 PP_3212 Pseudomonas putida KT2440 Rieske 2Fe-2S family protein NP_745356.1 3644968 R 160488 CDS NP_745357.1 26989932 1046861 complement(3646032..3647060) 1 NC_002947.3 similar to GB:Z25795, SP:P39122, PID:397489, PID:2293137, and GB:AL009126; identified by sequence similarity; ABC transporter substrate-binding protein 3647060 1046861 PP_3213 Pseudomonas putida KT2440 ABC transporter substrate-binding protein NP_745357.1 3646032 R 160488 CDS NP_745358.1 26989933 1046863 3647714..3648520 1 NC_002947.3 similar to GP:13937484; identified by sequence similarity; hypothetical protein 3648520 1046863 PP_3214 Pseudomonas putida KT2440 hypothetical protein NP_745358.1 3647714 D 160488 CDS NP_745359.1 26989934 1046862 complement(3650211..3650819) 1 NC_002947.3 hypothetical protein 3650819 1046862 PP_3216 Pseudomonas putida KT2440 hypothetical protein NP_745359.1 3650211 R 160488 CDS NP_745360.1 26989935 1046871 3651116..3652054 1 NC_002947.3 identified by match to PFAM protein family HMM PF04069; aliphatic sulfonate ABC transporter substrate-binding protein 3652054 1046871 PP_3217 Pseudomonas putida KT2440 aliphatic sulfonate ABC transporter substrate-binding protein NP_745360.1 3651116 D 160488 CDS NP_745361.1 26989936 1046864 3652112..3653431 1 NC_002947.3 similar to SP:P37717, GB:X54676, PID:39288, SP:P37717, GB:X54676, and PID:39288; identified by sequence similarity; NtaA/SnaA/SoxA family monooxygenase 3653431 1046864 PP_3218 Pseudomonas putida KT2440 NtaA/SnaA/SoxA family monooxygenase NP_745361.1 3652112 D 160488 CDS NP_745362.1 26989937 1046867 complement(3653529..3654629) 1 NC_002947.3 similar to SP:O85764; identified by sequence similarity; alkansulfonate monooxygenase 3654629 1046867 PP_3219 Pseudomonas putida KT2440 alkansulfonate monooxygenase NP_745362.1 3653529 R 160488 CDS NP_745363.1 26989938 1046868 complement(3654770..3656389) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01727; ABC transporter ATP-binding protein 3656389 1046868 PP_3220 Pseudomonas putida KT2440 ABC transporter ATP-binding protein NP_745363.1 3654770 R 160488 CDS NP_745364.1 26989939 1046870 complement(3656386..3657294) 1 NC_002947.3 similar to GP:3170568; identified by sequence similarity; ABC transporter permease 3657294 1046870 PP_3221 Pseudomonas putida KT2440 ABC transporter permease NP_745364.1 3656386 R 160488 CDS NP_745365.1 26989940 1046890 complement(3657296..3658246) 1 NC_002947.3 similar to GP:3170567; identified by sequence similarity; ABC transporter permease 3658246 1046890 PP_3222 Pseudomonas putida KT2440 ABC transporter permease NP_745365.1 3657296 R 160488 CDS NP_745366.1 26989941 1046869 complement(3658243..3659862) 1 NC_002947.3 similar to GP:3170566; identified by sequence similarity; ABC transporter substrate-binding protein 3659862 1046869 PP_3223 Pseudomonas putida KT2440 ABC transporter substrate-binding protein NP_745366.1 3658243 R 160488 CDS NP_745367.1 26989942 1046872 complement(3659937..3660731) 1 NC_002947.3 similar to GP:9949570; identified by sequence similarity; aldolase 3660731 1046872 PP_3224 Pseudomonas putida KT2440 aldolase NP_745367.1 3659937 R 160488 CDS NP_745368.1 26989943 1046874 complement(3660747..3661691) 1 NC_002947.3 similar to GP:10173564; identified by sequence similarity; D-isomer specific 2-hydroxyacid dehydrogenase 3661691 1046874 PP_3225 Pseudomonas putida KT2440 D-isomer specific 2-hydroxyacid dehydrogenase NP_745368.1 3660747 R 160488 CDS NP_745369.1 26989944 1046873 complement(3661688..3662830) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00441; acyl-CoA dehydrogenase 3662830 1046873 PP_3226 Pseudomonas putida KT2440 acyl-CoA dehydrogenase NP_745369.1 3661688 R 160488 CDS NP_745370.1 26989945 1046876 complement(3663016..3663906) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 3663906 1046876 PP_3227 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745370.1 3663016 R 160488 CDS NP_745371.1 26989946 1046877 3664108..3665073 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; aliphatic sulfonate ABC transporter substrate-binding protein 3665073 1046877 PP_3228 Pseudomonas putida KT2440 aliphatic sulfonate ABC transporter substrate-binding protein NP_745371.1 3664108 D 160488 CDS NP_745372.1 26989947 1046875 3665090..3666046 1 NC_002947.3 similar to SP:P75853; identified by sequence similarity; aliphatic sulfonate ABC transporter substrate-binding protein 3666046 1046875 PP_3229 Pseudomonas putida KT2440 aliphatic sulfonate ABC transporter substrate-binding protein NP_745372.1 3665090 D 160488 CDS NP_745373.1 26989948 1046879 3666362..3667054 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01091; phosphoribosyl transferase domain-containing protein 3667054 1046879 PP_3230 Pseudomonas putida KT2440 phosphoribosyl transferase domain-containing protein NP_745373.1 3666362 D 160488 CDS NP_745374.1 26989949 1046878 complement(3667316..3668683) 1 NC_002947.3 similar to GP:7635890, and GP:15139960; identified by sequence similarity; hypothetical protein 3668683 1046878 PP_3231 Pseudomonas putida KT2440 hypothetical protein NP_745374.1 3667316 R 160488 CDS NP_745375.1 26989950 1046880 complement(3668743..3669312) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01575; acetyltransferase 3669312 1046880 PP_3232 Pseudomonas putida KT2440 acetyltransferase NP_745375.1 3668743 R 160488 CDS NP_745376.1 26989951 1046881 3669704..3670435 1 NC_002947.3 identified by match to PFAM protein family HMM PF00325; Crp/Fnr family transcriptional regulator 3670435 1046881 PP_3233 Pseudomonas putida KT2440 Crp/Fnr family transcriptional regulator NP_745376.1 3669704 D 160488 CDS NP_745377.1 26989952 1046882 3671193..3671888 1 NC_002947.3 identified by match to PFAM protein family HMM PF00011; heat shock protein 20 3671888 1046882 PP_3234 Pseudomonas putida KT2440 heat shock protein 20 NP_745377.1 3671193 D 160488 CDS NP_745378.1 26989953 1046883 3671947..3672339 1 NC_002947.3 similar to GB:X03349, PID:1197188, and PID:5673; identified by sequence similarity; hypothetical protein 3672339 1046883 PP_3235 Pseudomonas putida KT2440 hypothetical protein NP_745378.1 3671947 D 160488 CDS NP_745379.1 26989954 1046901 3672538..3672789 1 NC_002947.3 similar to GB:U00434, and PID:392549; identified by sequence similarity; lipoprotein OprI 3672789 1046901 PP_3236 Pseudomonas putida KT2440 lipoprotein OprI NP_745379.1 3672538 D 160488 CDS NP_745380.1 26989955 1046885 3672950..3673840 1 NC_002947.3 similar to SP:P03807; identified by sequence similarity; universal stress protein 3673840 1046885 PP_3237 Pseudomonas putida KT2440 universal stress protein NP_745380.1 3672950 D 160488 CDS NP_745381.1 26989956 1046884 complement(3673980..3674552) 1 NC_002947.3 similar to GB:D13173, PID:217113, and SP:P50032; identified by sequence similarity; transcriptional regulator PyrR 3674552 1046884 PP_3238 Pseudomonas putida KT2440 transcriptional regulator PyrR NP_745381.1 3673980 R 160488 CDS NP_745382.1 26989957 1046886 3674784..3675770 1 NC_002947.3 similar to GP:5524531, and GP:5524531; identified by sequence similarity; Tn4652, cointegrate resolution protein T 3675770 1046886 PP_3239 Pseudomonas putida KT2440 Tn4652, cointegrate resolution protein T NP_745382.1 3674784 D 160488 CDS NP_745383.1 26989958 1046887 3675826..3675990 1 NC_002947.3 similar to GP:3204406; identified by sequence similarity; hypothetical protein 3675990 1046887 PP_3240 Pseudomonas putida KT2440 hypothetical protein NP_745383.1 3675826 D 160488 CDS NP_745384.1 26989959 1046888 complement(3676342..3676842) 1 NC_002947.3 similar to GB:L08012, PID:311023, and SP:Q56592; identified by sequence similarity; hypothetical protein 3676842 1046888 PP_3241 Pseudomonas putida KT2440 hypothetical protein NP_745384.1 3676342 R 160488 CDS NP_745385.1 26989960 1046889 3676995..3678563 1 NC_002947.3 identified by match to PFAM protein family HMM PF00990; diguanylate cyclase 3678563 1046889 PP_3242 Pseudomonas putida KT2440 diguanylate cyclase NP_745385.1 3676995 D 160488 CDS NP_745386.1 26989961 1046891 complement(3678606..3679115) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01575; acetyltransferase 3679115 1046891 PP_3243 Pseudomonas putida KT2440 acetyltransferase NP_745386.1 3678606 R 160488 CDS NP_745387.1 26989962 1046892 complement(3679133..3679846) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02308; magnesium transporter MgtC family protein 3679846 mgtC 1046892 mgtC Pseudomonas putida KT2440 magnesium transporter MgtC family protein NP_745387.1 3679133 R 160488 CDS NP_745388.1 26989963 1046893 complement(3679953..3680231) 1 NC_002947.3 hypothetical protein 3680231 1046893 PP_3245 Pseudomonas putida KT2440 hypothetical protein NP_745388.1 3679953 R 160488 CDS NP_745389.1 26989964 1046895 3680244..3680711 1 NC_002947.3 similar to GB:J04982, GB:J03593, GB:J02966, SP:P05141, SP:P12235, PID:178659, PID:339725, PID:339920, GB:J04982, GB:J03593, GB:J02966, SP:P05141, SP:P12235, PID:178659, PID:339725, and PID:339920; identified by sequence similarity; fatty acid hydroxylase 3680711 1046895 PP_3246 Pseudomonas putida KT2440 fatty acid hydroxylase NP_745389.1 3680244 D 160488 CDS NP_745390.1 26989965 1046894 complement(3680755..3681648) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00841; bile acid/Na+ symporter family protein 3681648 1046894 PP_3247 Pseudomonas putida KT2440 bile acid/Na+ symporter family protein NP_745390.1 3680755 R 160488 CDS NP_745391.1 26989966 1046896 3681833..3682696 1 NC_002947.3 identified by match to PFAM protein family HMM PF04261; Dyp-type peroxidase 3682696 1046896 PP_3248 Pseudomonas putida KT2440 Dyp-type peroxidase NP_745391.1 3681833 D 160488 CDS NP_745392.1 26989967 1046897 3682879..3683697 1 NC_002947.3 similar to GB:L07807, GB:L07810, GB:L07808, GB:L07809, SP:Q05193, PID:181849, and PID:181851; identified by sequence similarity; aldo/keto reductase 3683697 1046897 PP_3249 Pseudomonas putida KT2440 aldo/keto reductase NP_745392.1 3682879 D 160488 CDS NP_745393.1 26989968 1046900 3683702..3684985 1 NC_002947.3 identified by match to PFAM protein family HMM PF04172; major facilitator superfamily transporter 3684985 1046900 PP_3250 Pseudomonas putida KT2440 major facilitator superfamily transporter NP_745393.1 3683702 D 160488 CDS NP_745394.1 26989969 1046898 3685590..3686921 1 NC_002947.3 hypothetical protein 3686921 1046898 PP_3251 Pseudomonas putida KT2440 hypothetical protein NP_745394.1 3685590 D 160488 CDS NP_745395.1 26989970 1046899 3686924..3687874 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00537; HemK family modification methylase 3687874 1046899 PP_3252 Pseudomonas putida KT2440 HemK family modification methylase NP_745395.1 3686924 D 160488 CDS NP_745396.1 26989971 1046906 3687881..3688987 1 NC_002947.3 ATP-dependent carboxylate-amine ligase; carboxylate-amine ligase 3688987 1046906 PP_3253 Pseudomonas putida KT2440 carboxylate-amine ligase NP_745396.1 3687881 D 160488 CDS NP_745397.1 26989972 1046902 3688978..3689631 1 NC_002947.3 similar to SP:P80094; identified by sequence similarity; nucleosidase 3689631 1046902 PP_3254 Pseudomonas putida KT2440 nucleosidase NP_745397.1 3688978 D 160488 CDS NP_745398.1 26989973 1046903 3689717..3690538 1 NC_002947.3 identified by match to PFAM protein family HMM PF02735; hypothetical protein 3690538 1046903 PP_3255 Pseudomonas putida KT2440 hypothetical protein NP_745398.1 3689717 D 160488 CDS NP_745399.1 26989974 1046904 complement(3690560..3691219) 1 NC_002947.3 similar to GB:M66160, SP:P26977, and PID:154288; identified by sequence similarity; glycosyl transferase family protein 3691219 1046904 PP_3256 Pseudomonas putida KT2440 glycosyl transferase family protein NP_745399.1 3690560 R 160488 CDS NP_745400.1 26989975 1046908 complement(3691216..3691815) 1 NC_002947.3 similar to GB:X75771, and PID:455422; identified by sequence similarity; methyltransferase 3691815 1046908 PP_3257 Pseudomonas putida KT2440 methyltransferase NP_745400.1 3691216 R 160488 CDS NP_745401.1 26989976 1046914 complement(3691827..3692582) 1 NC_002947.3 similar to GB:Z23140, SP:P43221, and PID:312981; identified by sequence similarity; LmbE family protein 3692582 1046914 PP_3258 Pseudomonas putida KT2440 LmbE family protein NP_745401.1 3691827 R 160488 CDS NP_745402.1 26989977 1046905 complement(3692579..3693622) 1 NC_002947.3 similar to GB:X80061, and PID:510823; identified by sequence similarity; acyl-CoA dehydrogenase 3693622 1046905 PP_3259 Pseudomonas putida KT2440 acyl-CoA dehydrogenase NP_745402.1 3692579 R 160488 CDS NP_745403.1 26989978 1046910 complement(3693663..3696164) 1 NC_002947.3 catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase 3696164 ligD 1046910 ligD Pseudomonas putida KT2440 ATP-dependent DNA ligase NP_745403.1 3693663 R 160488 CDS NP_745404.1 26989979 1046907 3696355..3696756 1 NC_002947.3 similar to GP:9947860; identified by sequence similarity; hypothetical protein 3696756 1046907 PP_3261 Pseudomonas putida KT2440 hypothetical protein NP_745404.1 3696355 D 160488 CDS NP_745405.1 26989980 1046913 3696753..3696977 1 NC_002947.3 similar to SP:P08002; identified by sequence similarity; metallothionein 3696977 1046913 PP_3262 Pseudomonas putida KT2440 metallothionein NP_745405.1 3696753 D 160488 CDS NP_745406.1 26989981 1046909 complement(3697514..3698467) 1 NC_002947.3 hypothetical protein 3698467 1046909 PP_3263 Pseudomonas putida KT2440 hypothetical protein NP_745406.1 3697514 R 160488 CDS NP_745407.1 26989982 1046911 complement(3698467..3699669) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00614; cardiolipin synthase 2 3699669 1046911 PP_3264 Pseudomonas putida KT2440 cardiolipin synthase 2 NP_745407.1 3698467 R 160488 CDS NP_745408.1 26989983 1046918 complement(3699666..3700439) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03372; hypothetical protein 3700439 1046918 PP_3265 Pseudomonas putida KT2440 hypothetical protein NP_745408.1 3699666 R 160488 CDS NP_745409.1 26989984 1046912 complement(3700436..3701488) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01904; hypothetical protein 3701488 1046912 PP_3266 Pseudomonas putida KT2440 hypothetical protein NP_745409.1 3700436 R 160488 CDS NP_745410.1 26989985 1046915 3701568..3702164 1 NC_002947.3 identified by match to PFAM protein family HMM PF00574; Clp protease 3702164 1046915 PP_3267 Pseudomonas putida KT2440 Clp protease NP_745410.1 3701568 D 160488 CDS NP_745411.1 26989986 1046916 complement(3702166..3702564) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00127; MutT/nudix family protein 3702564 1046916 PP_3268 Pseudomonas putida KT2440 MutT/nudix family protein NP_745411.1 3702166 R 160488 CDS NP_745412.1 26989987 1046935 3702752..3703009 1 NC_002947.3 hypothetical protein 3703009 1046935 PP_3269 Pseudomonas putida KT2440 hypothetical protein NP_745412.1 3702752 D 160488 CDS NP_745413.1 26989988 1046917 complement(3703944..3705998) 1 NC_002947.3 catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA; bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase 3705998 phaL 1046917 phaL Pseudomonas putida KT2440 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase NP_745413.1 3703944 R 160488 CDS NP_745414.1 26989989 1046920 complement(3706036..3707289) 1 NC_002947.3 similar to GP:3253207, and GP:3253207; identified by sequence similarity; porin 3707289 phaK 1046920 phaK Pseudomonas putida KT2440 porin NP_745414.1 3706036 R 160488 CDS NP_745415.1 26989990 1046919 complement(3707308..3708870) 1 NC_002947.3 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 3708870 actP 1046919 actP Pseudomonas putida KT2440 acetate permease NP_745415.1 3707308 R 160488 CDS NP_745416.1 26989991 1046921 complement(3708867..3709175) 1 NC_002947.3 hypothetical protein 3709175 1046921 PP_3273 Pseudomonas putida KT2440 hypothetical protein NP_745416.1 3708867 R 160488 CDS NP_745417.1 26989992 1046923 complement(3709317..3710393) 1 NC_002947.3 similar to GP:3253205, and GP:3253205; identified by sequence similarity; phenylacetate-CoA oxygenase/reductase subunit PaaK 3710393 phaI 1046923 phaI Pseudomonas putida KT2440 phenylacetate-CoA oxygenase/reductase subunit PaaK NP_745417.1 3709317 R 160488 CDS NP_745418.1 26989993 1046922 complement(3710409..3710942) 1 NC_002947.3 similar to GP:3253204, and GP:3253204; identified by sequence similarity; phenylacetate-CoA oxygenase subunit PaaJ 3710942 phaH 1046922 phaH Pseudomonas putida KT2440 phenylacetate-CoA oxygenase subunit PaaJ NP_745418.1 3710409 R 160488 CDS NP_745419.1 26989994 1046925 complement(3710929..3711687) 1 NC_002947.3 similar to GP:3253203, and GP:3253203; identified by sequence similarity; phenylacetate-CoA oxygenase subunit PaaI 3711687 1046925 PP_3276 Pseudomonas putida KT2440 phenylacetate-CoA oxygenase subunit PaaI NP_745419.1 3710929 R 160488 CDS NP_745420.1 26989995 1046924 complement(3711696..3711977) 1 NC_002947.3 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB 3711977 paaB 1046924 paaB Pseudomonas putida KT2440 phenylacetate-CoA oxygenase subunit PaaB NP_745420.1 3711696 R 160488 CDS NP_745421.1 26989996 1046926 complement(3712003..3712992) 1 NC_002947.3 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA 3712992 paaA 1046926 paaA Pseudomonas putida KT2440 phenylacetate-CoA oxygenase subunit PaaA NP_745421.1 3712003 R 160488 CDS NP_745422.1 26989997 1046927 complement(3713191..3714510) 1 NC_002947.3 similar to GB:M24493, SP:P00362, PID:142952, GB:M24493, SP:P00362, PID:142952, SP:P11886, GB:X14913, and PID:45506; identified by sequence similarity; phenylacetate-CoA ligase 3714510 phaE 1046927 phaE Pseudomonas putida KT2440 phenylacetate-CoA ligase NP_745422.1 3713191 R 160488 CDS NP_745423.1 26989998 1046928 complement(3714632..3715852) 1 NC_002947.3 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase 3715852 phaD 1046928 phaD Pseudomonas putida KT2440 beta-ketoadipyl CoA thiolase NP_745423.1 3714632 R 160488 CDS NP_745424.1 26989999 1046930 complement(3715845..3716285) 1 NC_002947.3 similar to GP:11072188, and GP:10635044; identified by sequence similarity; phenylacetic acid degradation protein PaaD 3716285 1046930 PP_3281 Pseudomonas putida KT2440 phenylacetic acid degradation protein PaaD NP_745424.1 3715845 R 160488 CDS NP_745425.1 26990000 1046929 complement(3716278..3717795) 1 NC_002947.3 converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation; 3-hydroxyacyl-CoA dehydrogenase 3717795 paaC 1046929 paaC Pseudomonas putida KT2440 3-hydroxyacyl-CoA dehydrogenase NP_745425.1 3716278 R 160488 CDS NP_745426.1 26990001 1046931 complement(3717798..3718589) 1 NC_002947.3 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3718589 phaB 1046931 phaB Pseudomonas putida KT2440 enoyl-CoA hydratase NP_745426.1 3717798 R 160488 CDS NP_745427.1 26990002 1046932 complement(3718624..3719397) 1 NC_002947.3 similar to GP:3253197, and GP:3253197; identified by sequence similarity; enoyl-CoA hydratase 3719397 1046932 PP_3284 Pseudomonas putida KT2440 enoyl-CoA hydratase NP_745427.1 3718624 R 160488 CDS NP_745428.1 26990003 1046933 3719744..3720343 1 NC_002947.3 similar to GP:3253209, and GP:3253209; identified by sequence similarity; phenylacetic acid degradation protein PaaY 3720343 phaM 1046933 phaM Pseudomonas putida KT2440 phenylacetic acid degradation protein PaaY NP_745428.1 3719744 D 160488 CDS NP_745429.1 26990004 1046936 3720421..3721344 1 NC_002947.3 similar to GP:3253210, and GP:3253210; identified by sequence similarity; PaaX family transcriptional regulator 3721344 phaN 1046936 phaN Pseudomonas putida KT2440 PaaX family transcriptional regulator NP_745429.1 3720421 D 160488 CDS NP_745430.1 26990005 1046939 complement(3721403..3722200) 1 NC_002947.3 similar to GP:3253196; identified by sequence similarity; Crp/Fnr family transcriptional regulator 3722200 1046939 PP_3287 Pseudomonas putida KT2440 Crp/Fnr family transcriptional regulator NP_745430.1 3721403 R 160488 CDS NP_745431.1 26990006 1046934 3722741..3723667 1 NC_002947.3 similar to SP:P03807; identified by sequence similarity; universal stress protein 3723667 1046934 PP_3288 Pseudomonas putida KT2440 universal stress protein NP_745431.1 3722741 D 160488 CDS NP_745432.1 26990007 1046951 complement(3723697..3724245) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00583; acetyltransferase 3724245 1046951 PP_3289 Pseudomonas putida KT2440 acetyltransferase NP_745432.1 3723697 R 160488 CDS NP_745433.1 26990008 1046937 3724428..3725354 1 NC_002947.3 identified by match to PFAM protein family HMM PF00582; universal stress protein 3725354 1046937 PP_3290 Pseudomonas putida KT2440 universal stress protein NP_745433.1 3724428 D 160488 CDS NP_745434.1 26990009 1046938 3725345..3726712 1 NC_002947.3 identified by match to PFAM protein family HMM PF00753; metallo-beta-lactamase 3726712 1046938 PP_3291 Pseudomonas putida KT2440 metallo-beta-lactamase NP_745434.1 3725345 D 160488 CDS NP_745435.1 26990010 1046940 3726785..3727429 1 NC_002947.3 hypothetical protein 3727429 1046940 PP_3292 Pseudomonas putida KT2440 hypothetical protein NP_745435.1 3726785 D 160488 CDS NP_745436.1 26990011 1046941 complement(3727489..3727914) 1 NC_002947.3 similar to GP:3413418; identified by sequence similarity; hypothetical protein 3727914 1046941 PP_3293 Pseudomonas putida KT2440 hypothetical protein NP_745436.1 3727489 R 160488 CDS NP_745437.1 26990012 1046943 3728127..3729017 1 NC_002947.3 identified by match to PFAM protein family HMM PF00582; universal stress protein 3729017 1046943 PP_3294 Pseudomonas putida KT2440 universal stress protein NP_745437.1 3728127 D 160488 CDS NP_745438.1 26990013 1046946 3729028..3729507 1 NC_002947.3 identified by match to PFAM protein family HMM PF04143; hypothetical protein 3729507 1046946 PP_3295 Pseudomonas putida KT2440 hypothetical protein NP_745438.1 3729028 D 160488 CDS NP_745439.1 26990014 1046942 3729464..3729943 1 NC_002947.3 identified by match to PFAM protein family HMM PF03675; hypothetical protein 3729943 1046942 PP_3296 Pseudomonas putida KT2440 hypothetical protein NP_745439.1 3729464 D 160488 CDS NP_745440.1 26990015 1046944 3730172..3730702 1 NC_002947.3 hypothetical protein 3730702 1046944 PP_3297 Pseudomonas putida KT2440 hypothetical protein NP_745440.1 3730172 D 160488 CDS NP_745441.1 26990016 1046945 3731100..3731603 1 NC_002947.3 similar to GP:9948158; identified by sequence similarity; CinA domain-containing protein 3731603 1046945 PP_3298 Pseudomonas putida KT2440 CinA domain-containing protein NP_745441.1 3731100 D 160488 CDS NP_745442.1 26990017 1046947 complement(3731774..3733237) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02321; outer membrane lipoprotein 3733237 1046947 PP_3299 Pseudomonas putida KT2440 outer membrane lipoprotein NP_745442.1 3731774 R 160488 CDS NP_745443.1 26990018 1046950 3733309..3733923 1 NC_002947.3 identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 3733923 1046950 PP_3300 Pseudomonas putida KT2440 TetR family transcriptional regulator NP_745443.1 3733309 D 160488 CDS NP_745444.1 26990019 1046948 3734001..3735104 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01740; RND efflux membrane fusion protein 3735104 1046948 PP_3301 Pseudomonas putida KT2440 RND efflux membrane fusion protein NP_745444.1 3734001 D 160488 CDS NP_745445.1 26990020 1046454 3735101..3738193 1 NC_002947.3 identified by match to PFAM protein family HMM PF00873; RND efflux transporter 3738193 1046454 PP_3302 Pseudomonas putida KT2440 RND efflux transporter NP_745445.1 3735101 D 160488 CDS NP_745446.2 161378128 1046958 3738266..3739558 1 NC_002947.3 FabF, beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-ACP synthase 3739558 1046958 PP_3303 Pseudomonas putida KT2440 3-oxoacyl-ACP synthase NP_745446.2 3738266 D 160488 CDS NP_745447.1 26990022 1046949 3739555..3740793 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00880; Bcr/CflA family multidrug resistance transporter 3740793 1046949 PP_3304 Pseudomonas putida KT2440 Bcr/CflA family multidrug resistance transporter NP_745447.1 3739555 D 160488 CDS NP_745448.1 26990023 1046952 complement(3740946..3741929) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03741; TerC family membrane protein 3741929 1046952 PP_3305 Pseudomonas putida KT2440 TerC family membrane protein NP_745448.1 3740946 R 160488 CDS NP_745449.1 26990024 1046953 complement(3742342..3742548) 1 NC_002947.3 similar to GP:6714754; identified by sequence similarity; hypothetical protein 3742548 1046953 PP_3306 Pseudomonas putida KT2440 hypothetical protein NP_745449.1 3742342 R 160488 CDS NP_745450.1 26990025 1046954 3742698..3743078 1 NC_002947.3 hypothetical protein 3743078 1046954 PP_3307 Pseudomonas putida KT2440 hypothetical protein NP_745450.1 3742698 D 160488 CDS NP_745451.1 26990026 1046453 3743190..3743717 1 NC_002947.3 similar to GP:6425609; identified by sequence similarity; oxidoreductase, small subunit 3743717 1046453 PP_3308 Pseudomonas putida KT2440 oxidoreductase, small subunit NP_745451.1 3743190 D 160488 CDS NP_745452.1 26990027 1046955 3743714..3744715 1 NC_002947.3 identified by match to PFAM protein family HMM PF03450; oxidoreductase, molybdopterin-binding subunit 3744715 1046955 PP_3309 Pseudomonas putida KT2440 oxidoreductase, molybdopterin-binding subunit NP_745452.1 3743714 D 160488 CDS NP_745453.1 26990028 1046956 3744712..3746928 1 NC_002947.3 similar to GP:2463459; identified by sequence similarity; oxidoreductase, large subunit 3746928 1046956 PP_3310 Pseudomonas putida KT2440 oxidoreductase, large subunit NP_745453.1 3744712 D 160488 CDS NP_745454.1 26990029 1046963 complement(3747012..3748757) 1 NC_002947.3 similar to GB:U03100, GB:D14705, GB:L22080, GB:D13866, SP:P35221, PID:1172426, PID:347316, PID:404105, PID:433411, GB:Y00281, SP:P04843, and PID:36053; identified by sequence similarity; glutathione-regulated potassium-proton antiporter 3748757 1046963 PP_3311 Pseudomonas putida KT2440 glutathione-regulated potassium-proton antiporter NP_745454.1 3747012 R 160488 CDS NP_745455.1 26990030 1046957 complement(3748952..3749341) 1 NC_002947.3 similar to GP:13568405; identified by sequence similarity; heat shock protein 3749341 1046957 PP_3312 Pseudomonas putida KT2440 heat shock protein NP_745455.1 3748952 R 160488 CDS NP_745456.1 26990031 1046959 complement(3749482..3749853) 1 NC_002947.3 similar to GB:M34254, SP:P00309, PID:149776, GB:M34254, SP:P00309, and PID:149776; identified by sequence similarity; heat shock protein 3749853 1046959 PP_3313 Pseudomonas putida KT2440 heat shock protein NP_745456.1 3749482 R 160488 CDS NP_745457.1 26990032 1046960 complement(3749881..3750336) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00011; heat shock protein 20 3750336 1046960 PP_3314 Pseudomonas putida KT2440 heat shock protein 20 NP_745457.1 3749881 R 160488 CDS NP_745458.1 26990033 1046961 complement(3750526..3750996) 1 NC_002947.3 hypothetical protein 3750996 1046961 PP_3315 Pseudomonas putida KT2440 hypothetical protein NP_745458.1 3750526 R 160488 CDS NP_745459.1 26990034 1046962 complement(3751057..3753879) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02861; chaperone-associated ATPase 3753879 1046962 PP_3316 Pseudomonas putida KT2440 chaperone-associated ATPase NP_745459.1 3751057 R 160488 CDS NP_745460.1 26990035 1046964 complement(3753933..3754058) 1 NC_002947.3 similar to GP:9756948; identified by sequence similarity; hypothetical protein 3754058 1046964 PP_3317 Pseudomonas putida KT2440 hypothetical protein NP_745460.1 3753933 R 160488 CDS NP_745461.1 26990036 1046966 complement(3754045..3754287) 1 NC_002947.3 hypothetical protein 3754287 1046966 PP_3318 Pseudomonas putida KT2440 hypothetical protein NP_745461.1 3754045 R 160488 CDS NP_745462.1 26990037 1046968 3754557..3756758 1 NC_002947.3 similar to GP:6759486; identified by sequence similarity; sensory box protein 3756758 1046968 PP_3319 Pseudomonas putida KT2440 sensory box protein NP_745462.1 3754557 D 160488 CDS NP_745463.1 26990038 1046965 complement(3756944..3757111) 1 NC_002947.3 hypothetical protein 3757111 1046965 PP_3320 Pseudomonas putida KT2440 hypothetical protein NP_745463.1 3756944 R 160488 CDS NP_745464.1 26990039 1046967 3757176..3757688 1 NC_002947.3 hypothetical protein 3757688 1046967 PP_3321 Pseudomonas putida KT2440 hypothetical protein NP_745464.1 3757176 D 160488 CDS NP_745465.1 26990040 1046969 3757685..3758686 1 NC_002947.3 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 3758686 hemB-2 1046969 hemB-2 Pseudomonas putida KT2440 delta-aminolevulinic acid dehydratase NP_745465.1 3757685 D 160488 CDS NP_745466.1 26990041 1046987 3758733..3759344 1 NC_002947.3 similar to GB:X59303, GB:X91861, SP:P26640, and PID:31545; identified by sequence similarity; CobW/P47K family protein 3759344 1046987 PP_3323 Pseudomonas putida KT2440 CobW/P47K family protein NP_745466.1 3758733 D 160488 CDS NP_745467.1 26990042 1046975 3759365..3760339 1 NC_002947.3 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; GTP cyclohydrolase 3760339 1046975 PP_3324 Pseudomonas putida KT2440 GTP cyclohydrolase NP_745467.1 3759365 D 160488 CDS NP_745468.1 26990043 1046970 3760650..3762740 1 NC_002947.3 identified by match to PFAM protein family HMM PF00593; outer membrane ferric siderophore receptor 3762740 1046970 PP_3325 Pseudomonas putida KT2440 outer membrane ferric siderophore receptor NP_745468.1 3760650 D 160488 CDS NP_745469.1 26990044 1046972 3762755..3763477 1 NC_002947.3 similar to GB:L10982, GB:L10982, PID:432188, GB:L10982, GB:L10982, and PID:432188; identified by sequence similarity; hypothetical protein 3763477 1046972 PP_3326 Pseudomonas putida KT2440 hypothetical protein NP_745469.1 3762755 D 160488 CDS NP_745470.1 26990045 1046973 complement(3765152..3765565) 1 NC_002947.3 similar to GP:15162288; identified by sequence similarity; ring-cleaving dioxygenase 3765565 1046973 PP_3328 Pseudomonas putida KT2440 ring-cleaving dioxygenase NP_745470.1 3765152 R 160488 CDS NP_745471.1 26990046 1046976 3766565..3767854 1 NC_002947.3 similar to GP:3288609; identified by sequence similarity; hypothetical protein 3767854 1046976 PP_3329 Pseudomonas putida KT2440 hypothetical protein NP_745471.1 3766565 D 160488 CDS NP_745472.1 26990047 1046974 3768411..3770597 1 NC_002947.3 identified by match to PFAM protein family HMM PF00593; TonB-dependent siderophore receptor 3770597 1046974 PP_3330 Pseudomonas putida KT2440 TonB-dependent siderophore receptor NP_745472.1 3768411 D 160488 CDS NP_745473.1 26990048 1046452 3770585..3772078 1 NC_002947.3 hypothetical protein 3772078 1046452 PP_3331 Pseudomonas putida KT2440 hypothetical protein NP_745473.1 3770585 D 160488 CDS NP_745474.1 26990049 1046977 3772385..3772675 1 NC_002947.3 similar to GP:9951825; identified by sequence similarity; cytochrome c-type protein 3772675 1046977 PP_3332 Pseudomonas putida KT2440 cytochrome c-type protein NP_745474.1 3772385 D 160488 CDS NP_745475.1 26990050 1046981 complement(3774368..3774970) 1 NC_002947.3 similar to GP:9949956; identified by sequence similarity; hypothetical protein 3774970 1046981 PP_3335 Pseudomonas putida KT2440 hypothetical protein NP_745475.1 3774368 R 160488 CDS NP_745476.1 26990051 1046980 complement(3775021..3775473) 1 NC_002947.3 hypothetical protein 3775473 1046980 PP_3336 Pseudomonas putida KT2440 hypothetical protein NP_745476.1 3775021 R 160488 CDS NP_745477.1 26990052 1046982 complement(3775577..3775972) 1 NC_002947.3 similar to GP:9946290, and GP:9946290; identified by sequence similarity; hypothetical protein 3775972 1046982 PP_3337 Pseudomonas putida KT2440 hypothetical protein NP_745477.1 3775577 R 160488 CDS NP_745478.1 26990053 1046983 3776046..3776315 1 NC_002947.3 similar to GB:M86697, PID:150672, GB:M86697, and PID:150672; identified by sequence similarity; ubiquinol oxidase subunit II 3776315 1046983 PP_3338 Pseudomonas putida KT2440 ubiquinol oxidase subunit II NP_745478.1 3776046 D 160488 CDS NP_745479.1 26990054 1046985 3776458..3776865 1 NC_002947.3 hypothetical protein 3776865 1046985 PP_3339 Pseudomonas putida KT2440 hypothetical protein NP_745479.1 3776458 D 160488 CDS NP_745480.1 26990055 1046984 3776944..3778995 1 NC_002947.3 identified by match to PFAM protein family HMM PF00593; TonB-dependent receptor 3778995 1046984 PP_3340 Pseudomonas putida KT2440 TonB-dependent receptor NP_745480.1 3776944 D 160488 CDS NP_745481.1 26990056 1046996 complement(3779043..3779459) 1 NC_002947.3 Inhibits transcription at high concentrations of nickel; nickel responsive regulator 3779459 1046996 PP_3341 Pseudomonas putida KT2440 nickel responsive regulator NP_745481.1 3779043 R 160488 CDS NP_745482.1 26990057 1046986 3779547..3781121 1 NC_002947.3 similar to GB:L01694, SP:Q03113, PID:182994, GB:L01694, SP:Q03113, and PID:182994; identified by sequence similarity; nickel ABC transporter substrate-binding protein 3781121 nikA 1046986 nikA Pseudomonas putida KT2440 nickel ABC transporter substrate-binding protein NP_745482.1 3779547 D 160488 CDS NP_745483.1 26990058 1046989 3781123..3782064 1 NC_002947.3 with NikACDE is involved in nickel transport into the cell; nickel ABC transporter permease 3782064 nikB 1046989 nikB Pseudomonas putida KT2440 nickel ABC transporter permease NP_745483.1 3781123 D 160488 CDS NP_745484.1 26990059 1046990 3782061..3782906 1 NC_002947.3 with NikABDE is involved in nickel transport into the cell; nickel transporter permease NikC 3782906 nikC 1046990 nikC Pseudomonas putida KT2440 nickel transporter permease NikC NP_745484.1 3782061 D 160488 CDS NP_745485.1 26990060 1046988 3782907..3783677 1 NC_002947.3 with NikABCE is involved in nickel transport into the cell; nickel transporter ATP-binding protein NikD 3783677 nikD 1046988 nikD Pseudomonas putida KT2440 nickel transporter ATP-binding protein NikD NP_745485.1 3782907 D 160488 CDS NP_745486.1 26990061 1046991 3783674..3784495 1 NC_002947.3 with NikABCD is involved with nickel transport into the cell; nickel transporter ATP-binding protein NikE 3784495 nikE 1046991 nikE Pseudomonas putida KT2440 nickel transporter ATP-binding protein NikE NP_745486.1 3783674 D 160488 CDS NP_745487.1 26990062 1046553 complement(3784670..3784804) 1 NC_002947.3 hypothetical protein 3784804 1046553 PP_3347 Pseudomonas putida KT2440 hypothetical protein NP_745487.1 3784670 R 160488 CDS NP_745488.1 26990063 1046992 3784803..3785948 1 NC_002947.3 identified by match to PFAM protein family HMM PF00990; diguanylate cyclase 3785948 1046992 PP_3348 Pseudomonas putida KT2440 diguanylate cyclase NP_745488.1 3784803 D 160488 CDS NP_745489.1 26990064 1046995 complement(3785964..3787205) 1 NC_002947.3 similar to GP:3097809, and SP:P77589; identified by sequence similarity; 3-hydroxyphenylpropionic transporter MhpT 3787205 1046995 PP_3349 Pseudomonas putida KT2440 3-hydroxyphenylpropionic transporter MhpT NP_745489.1 3785964 R 160488 CDS NP_745490.1 26990065 1046998 complement(3787240..3788631) 1 NC_002947.3 hypothetical protein 3788631 1046998 PP_3350 Pseudomonas putida KT2440 hypothetical protein NP_745490.1 3787240 R 160488 CDS NP_745491.1 26990066 1046619 complement(3788702..3788809) 1 NC_002947.3 hypothetical protein 3788809 1046619 PP_3351 Pseudomonas putida KT2440 hypothetical protein NP_745491.1 3788702 R 160488 CDS NP_745492.1 26990067 1046993 3788893..3790557 1 NC_002947.3 similar to SP:P51691, GB:Z32517, GB:U03505, and PID:488752; identified by sequence similarity; arylsulfatase 3790557 1046993 PP_3352 Pseudomonas putida KT2440 arylsulfatase NP_745492.1 3788893 D 160488 CDS NP_745493.1 26990068 1046997 3790704..3791579 1 NC_002947.3 similar to GB:X04968, PID:42405, GB:X04968, and PID:42405; identified by sequence similarity; hypothetical protein 3791579 1046997 PP_3353 Pseudomonas putida KT2440 hypothetical protein NP_745493.1 3790704 D 160488 CDS NP_745494.1 26990069 1047004 complement(3791560..3793314) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00441; acyl-CoA dehydrogenase 3793314 1047004 PP_3354 Pseudomonas putida KT2440 acyl-CoA dehydrogenase NP_745494.1 3791560 R 160488 CDS NP_745495.1 26990070 1046994 complement(3793329..3794519) 1 NC_002947.3 similar to GP:6273623, and GP:6273623; identified by sequence similarity; beta-ketothiolase 3794519 1046994 PP_3355 Pseudomonas putida KT2440 beta-ketothiolase NP_745495.1 3793329 R 160488 CDS NP_745496.1 26990071 1046999 complement(3794567..3796336) 1 NC_002947.3 catalyzes the conversion of ferulic acid to feruloyl-CoA; feruloyl-CoA synthase 3796336 fcs 1046999 fcs Pseudomonas putida KT2440 feruloyl-CoA synthase NP_745496.1 3794567 R 160488 CDS NP_745497.1 26990072 1047002 complement(3796542..3797990) 1 NC_002947.3 similar to GP:3116018, GB:D17462, SP:P43438, and PID:487281; identified by sequence similarity; vanillin dehydrogenase 3797990 vdh 1047002 vdh Pseudomonas putida KT2440 vanillin dehydrogenase NP_745497.1 3796542 R 160488 CDS NP_745498.1 26990073 1047000 complement(3798066..3798896) 1 NC_002947.3 catalyzes the conversion of feruloyl-CoA to vanillin and acetyl-CoA; p-hydroxycinnamoyl CoA hydratase/lyase 3798896 ech 1047000 ech Pseudomonas putida KT2440 p-hydroxycinnamoyl CoA hydratase/lyase NP_745498.1 3798066 R 160488 CDS NP_745499.1 26990074 1046535 3799094..3799564 1 NC_002947.3 similar to GP:6740921, and GP:6740921; identified by sequence similarity; hydroxycinnamic acid degradation regulator 3799564 1046535 PP_3359 Pseudomonas putida KT2440 hydroxycinnamic acid degradation regulator NP_745499.1 3799094 D 160488 CDS NP_745500.1 26990075 1047001 3799663..3800787 1 NC_002947.3 similar to GB:U00006, SP:P02408, GB:V00339, PID:396324, PID:42816, GB:U00096, PID:1790417, GB:U00006, SP:P02408, GB:V00339, PID:396324, PID:42816, GB:U00096, and PID:1790417; identified by sequence similarity; hypothetical protein 3800787 1047001 PP_3360 Pseudomonas putida KT2440 hypothetical protein NP_745500.1 3799663 D 160488 CDS NP_745501.1 26990076 1047003 complement(3800866..3803913) 1 NC_002947.3 similar to GP:7294449; identified by sequence similarity; hypothetical protein 3803913 1047003 PP_3361 Pseudomonas putida KT2440 hypothetical protein NP_745501.1 3800866 R 160488 CDS NP_745502.1 26990077 1047006 3804057..3804497 1 NC_002947.3 similar to GP:6224605; identified by sequence similarity; AsnC family transcriptional regulator 3804497 1047006 PP_3362 Pseudomonas putida KT2440 AsnC family transcriptional regulator NP_745502.1 3804057 D 160488 CDS NP_745503.1 26990078 1047020 complement(3804538..3805155) 1 NC_002947.3 similar to SP:P23030, GB:X54523, and PID:45524; identified by sequence similarity; hypothetical protein 3805155 1047020 PP_3363 Pseudomonas putida KT2440 hypothetical protein NP_745503.1 3804538 R 160488 CDS NP_745504.1 26990079 1047005 3805382..3807925 1 NC_002947.3 similar to GP:6521382; identified by sequence similarity; response regulator 3807925 1047005 PP_3364 Pseudomonas putida KT2440 response regulator NP_745504.1 3805382 D 160488 CDS NP_745505.1 26990080 1047007 complement(3808052..3809695) 1 NC_002947.3 catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase 3809695 1047007 PP_3365 Pseudomonas putida KT2440 acetolactate synthase NP_745505.1 3808052 R 160488 CDS NP_745506.1 26990081 1047018 3809881..3810762 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 3810762 1047018 PP_3366 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745506.1 3809881 D 160488 CDS NP_745507.1 26990082 1046537 complement(3810747..3811406) 1 NC_002947.3 similar to GP:7379781; identified by sequence similarity; hypothetical protein 3811406 1046537 PP_3367 Pseudomonas putida KT2440 hypothetical protein NP_745507.1 3810747 R 160488 CDS NP_745508.1 26990083 1046546 3811674..3812858 1 NC_002947.3 similar to GP:4808411; identified by sequence similarity; major facilitator family transporter 3812858 1046546 PP_3368 Pseudomonas putida KT2440 major facilitator family transporter NP_745508.1 3811674 D 160488 CDS NP_745509.1 26990084 1046607 3812921..3813772 1 NC_002947.3 similar to GP:6498264, and GP:9947058; identified by sequence similarity; LysR family transcriptional regulator 3813772 1046607 PP_3369 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745509.1 3812921 D 160488 CDS NP_745510.1 26990085 1046450 3813869..3814864 1 NC_002947.3 similar to GP:6468420; identified by sequence similarity; aldo/keto reductase 3814864 1046450 PP_3370 Pseudomonas putida KT2440 aldo/keto reductase NP_745510.1 3813869 D 160488 CDS NP_745511.1 26990086 1046764 complement(3814857..3816116) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02518; integral membrane sensor signal transduction histidine kinase 3816116 1046764 PP_3371 Pseudomonas putida KT2440 integral membrane sensor signal transduction histidine kinase NP_745511.1 3814857 R 160488 CDS NP_745512.1 26990087 1047021 complement(3816116..3816817) 1 NC_002947.3 similar to GB:M17783, SP:P07093, PID:183064, PID:412157, GB:L34155, SP:Q16787, PID:1149513, and PID:551597; identified by sequence similarity; winged helix family two component transcriptional regulator 3816817 cpxR 1047021 cpxR Pseudomonas putida KT2440 winged helix family two component transcriptional regulator NP_745512.1 3816116 R 160488 CDS NP_745513.1 26990088 1047023 3817015..3819378 1 NC_002947.3 identified by match to PFAM protein family HMM PF01103; surface antigen family protein 3819378 1047023 PP_3373 Pseudomonas putida KT2440 surface antigen family protein NP_745513.1 3817015 D 160488 CDS NP_745514.1 26990089 1046529 3819509..3819892 1 NC_002947.3 hypothetical protein 3819892 1046529 PP_3374 Pseudomonas putida KT2440 hypothetical protein NP_745514.1 3819509 D 160488 CDS NP_745515.1 26990090 1047019 3819907..3820872 1 NC_002947.3 similar to GB:M28826, GB:M22168, GB:M22169, GB:M22170, GB:M22171, GB:M22172, GB:M22173, GB:M14665, SP:P29016, PID:180050, PID:180056, and PID:180064; identified by sequence similarity; deoxyribonuclease I 3820872 endA-2 1047019 endA-2 Pseudomonas putida KT2440 deoxyribonuclease I NP_745515.1 3819907 D 160488 CDS NP_745516.1 26990091 1047015 complement(3820915..3821877) 1 NC_002947.3 similar to SP:P37666; identified by sequence similarity; 2-ketogluconate 6-phosphate reductase 3821877 kguD 1047015 kguD Pseudomonas putida KT2440 2-ketogluconate 6-phosphate reductase NP_745516.1 3820915 R 160488 CDS NP_745517.1 26990092 1047016 complement(3821888..3823180) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00881; major facilitator superfamily transporter 3823180 1047016 PP_3377 Pseudomonas putida KT2440 major facilitator superfamily transporter NP_745517.1 3821888 R 160488 CDS NP_745518.1 26990093 1047012 complement(3823236..3824186) 1 NC_002947.3 similar to GP:9948289, GP:9948289, GB:X74614, SP:Q14990, and PID:474426; identified by sequence similarity; PfkB domain-containing protein 3824186 kguK 1047012 kguK Pseudomonas putida KT2440 PfkB domain-containing protein NP_745518.1 3823236 R 160488 CDS NP_745519.1 26990094 1047009 complement(3824179..3824958) 1 NC_002947.3 xylose isomerase 3824958 1047009 PP_3379 Pseudomonas putida KT2440 xylose isomerase NP_745519.1 3824179 R 160488 CDS NP_745520.1 26990095 1046449 complement(3825023..3826042) 1 NC_002947.3 similar to GP:3282331; identified by sequence similarity; PtxS family transcriptional regulator 3826042 ptxS 1046449 ptxS Pseudomonas putida KT2440 PtxS family transcriptional regulator NP_745520.1 3825023 R 160488 CDS NP_745521.1 26990096 1046526 complement(3826645..3827973) 1 NC_002947.3 similar to GP:6723233; identified by sequence similarity; ISPpu9, transposase 3827973 1046526 PP_3381 Pseudomonas putida KT2440 ISPpu9, transposase NP_745521.1 3826645 R 160488 CDS NP_745522.1 26990097 1046527 complement(3828332..3829585) 1 NC_002947.3 similar to GP:5532314; identified by sequence similarity; gluconate 2-dehydrogenase 3829585 1046527 PP_3382 Pseudomonas putida KT2440 gluconate 2-dehydrogenase NP_745522.1 3828332 R 160488 CDS NP_745523.1 26990098 1046533 complement(3829592..3831376) 1 NC_002947.3 similar to GP:2584862, and GP:2584862; identified by sequence similarity; gluconate 2-dehydrogenase 3831376 1046533 PP_3383 Pseudomonas putida KT2440 gluconate 2-dehydrogenase NP_745523.1 3829592 R 160488 CDS NP_745524.1 26990099 1046448 complement(3831380..3832120) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01409; gluconate 2-dehydrogenase 3832120 1046448 PP_3384 Pseudomonas putida KT2440 gluconate 2-dehydrogenase NP_745524.1 3831380 R 160488 CDS NP_745525.1 26990100 1046528 3832471..3833319 1 NC_002947.3 hypothetical protein 3833319 1046528 PP_3385 Pseudomonas putida KT2440 hypothetical protein NP_745525.1 3832471 D 160488 CDS NP_745526.1 26990101 1046531 3833333..3835510 1 NC_002947.3 similar to GP:2920640; identified by sequence similarity; vgrG protein 3835510 vgrG-2 1046531 vgrG-2 Pseudomonas putida KT2440 vgrG protein NP_745526.1 3833333 D 160488 CDS NP_745527.1 26990102 1046530 3835441..3836388 1 NC_002947.3 hypothetical protein 3836388 1046530 PP_3387 Pseudomonas putida KT2440 hypothetical protein NP_745527.1 3835441 D 160488 CDS NP_745528.1 26990103 1046523 3836403..3839075 1 NC_002947.3 identified by match to PFAM protein family HMM PF04211; hypothetical protein 3839075 1046523 PP_3388 Pseudomonas putida KT2440 hypothetical protein NP_745528.1 3836403 D 160488 CDS NP_745529.1 26990104 1046447 3839075..3840232 1 NC_002947.3 hypothetical protein 3840232 1046447 PP_3389 Pseudomonas putida KT2440 hypothetical protein NP_745529.1 3839075 D 160488 CDS NP_745530.1 26990105 1046521 complement(3840235..3841515) 1 NC_002947.3 similar to GP:3253207; identified by sequence similarity; porin 3841515 1046521 PP_3390 Pseudomonas putida KT2440 porin NP_745530.1 3840235 R 160488 CDS NP_745531.1 26990106 1046522 complement(3841565..3842881) 1 NC_002947.3 similar to GB:L34058, SP:P55290, PID:1381790, PID:1381792, and PID:506408; identified by sequence similarity; tartrate MFS transporter 3842881 1046522 PP_3391 Pseudomonas putida KT2440 tartrate MFS transporter NP_745531.1 3841565 R 160488 CDS NP_745532.1 26990107 1046768 complement(3842949..3843473) 1 NC_002947.3 similar to GB:J00124, GB:X59475, GB:M28646, SP:P02533, and PID:386848; identified by sequence similarity; anhydrase 3 protein 3843473 1046768 PP_3392 Pseudomonas putida KT2440 anhydrase 3 protein NP_745532.1 3842949 R 160488 CDS NP_745533.1 26990108 1046451 complement(3843486..3844676) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02515; CAIB/BAIF family protein 3844676 1046451 PP_3393 Pseudomonas putida KT2440 CAIB/BAIF family protein NP_745533.1 3843486 R 160488 CDS NP_745534.1 26990109 1046769 complement(3844701..3845630) 1 NC_002947.3 similar to GP:3426048, GB:M63959, GB:U06976, SP:P30533, PID:1235526, PID:177874, and PID:463882; identified by sequence similarity; 3-hydroxy-3-methylglutaryl-CoA lyase 3845630 1046769 PP_3394 Pseudomonas putida KT2440 3-hydroxy-3-methylglutaryl-CoA lyase NP_745534.1 3844701 R 160488 CDS NP_745535.1 26990110 1046462 complement(3845728..3846693) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 3846693 1046462 PP_3395 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745535.1 3845728 R 160488 CDS NP_745536.1 26990111 1046278 3846908..3848236 1 NC_002947.3 hypothetical protein 3848236 1046278 PP_3396 Pseudomonas putida KT2440 hypothetical protein NP_745536.1 3846908 D 160488 CDS NP_745537.1 26990112 1046457 3848233..3850500 1 NC_002947.3 hypothetical protein 3850500 1046457 PP_3397 Pseudomonas putida KT2440 hypothetical protein NP_745537.1 3848233 D 160488 CDS NP_745538.1 26990113 1046482 3850516..3850989 1 NC_002947.3 similar to GB:Z34974, GB:X79293, PID:1770488, PID:535015, PID:550115, SP:Q04222, and PID:141982; identified by sequence similarity; curlin associated repeat protein 3850989 1046482 PP_3398 Pseudomonas putida KT2440 curlin associated repeat protein NP_745538.1 3850516 D 160488 CDS NP_745539.1 26990114 1046505 3852610..3853257 1 NC_002947.3 similar to GP:6759911, GB:J05175, SP:P16442, PID:1783208, PID:1783212, PID:1783214, PID:1783218, PID:1783226, PID:2352626, PID:340078, and PID:992596; identified by sequence similarity; 2OG-Fe(II) oxygenase 3853257 alkB 1046505 alkB Pseudomonas putida KT2440 2OG-Fe(II) oxygenase NP_745539.1 3852610 D 160488 CDS NP_745540.1 26990115 1046209 3853427..3853714 1 NC_002947.3 hypothetical protein 3853714 1046209 PP_3401 Pseudomonas putida KT2440 hypothetical protein NP_745540.1 3853427 D 160488 CDS NP_745541.1 26990116 1046497 complement(3853796..3854191) 1 NC_002947.3 hypothetical protein 3854191 1046497 PP_3402 Pseudomonas putida KT2440 hypothetical protein NP_745541.1 3853796 R 160488 CDS NP_745542.1 26990117 1044849 complement(3854312..3855199) 1 NC_002947.3 similar to GP:9948463, and GP:9948463; identified by sequence similarity; pirin 3855199 1044849 PP_3403 Pseudomonas putida KT2440 pirin NP_745542.1 3854312 R 160488 CDS NP_745543.1 26990118 1045781 complement(3855296..3856168) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00561; alpha/beta hydrolase 3856168 1045781 PP_3404 Pseudomonas putida KT2440 alpha/beta hydrolase NP_745543.1 3855296 R 160488 CDS NP_745544.1 26990119 1046516 complement(3856190..3856819) 1 NC_002947.3 similar to GP:9948339; identified by sequence similarity; lysine exporter protein LysE/YggA 3856819 1046516 PP_3405 Pseudomonas putida KT2440 lysine exporter protein LysE/YggA NP_745544.1 3856190 R 160488 CDS NP_745545.1 26990120 1046059 3856944..3857423 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01575; acetyltransferase 3857423 1046059 PP_3406 Pseudomonas putida KT2440 acetyltransferase NP_745545.1 3856944 D 160488 CDS NP_745546.1 26990121 1046499 3857420..3857650 1 NC_002947.3 hypothetical protein 3857650 1046499 PP_3407 Pseudomonas putida KT2440 hypothetical protein NP_745546.1 3857420 D 160488 CDS NP_745547.1 26990122 1046190 3858740..3859129 1 NC_002947.3 similar to GB:M60484, GB:X12656, GB:J03805, SP:P05323, SP:P11082, PID:178438, PID:190226, and PID:35581; identified by sequence similarity; cobalamin biosynthesis protein cobE 3859129 1046190 PP_3409 Pseudomonas putida KT2440 cobalamin biosynthesis protein cobE NP_745547.1 3858740 D 160488 CDS NP_745548.1 26990123 1046496 3859164..3859916 1 NC_002947.3 similar to GB:M16237, GB:M16243, GB:M16244, GB:M16245, GB:K03212, GB:K03213, GB:K03214, GB:K03215, GB:K03216, GB:K03217, GB:K03218, GB:X04000, GB:X03996, GB:X03998, GB:X03995, GB:X02647, GB:X03999, GB:X03997, SP:P12931, PID:1848077, and PID:338460; identified by sequence similarity; precorrin-4 C(11)-methyltransferase 3859916 cobM 1046496 cobM Pseudomonas putida KT2440 precorrin-4 C(11)-methyltransferase NP_745548.1 3859164 D 160488 CDS NP_745549.1 26990124 1045596 3859983..3860225 1 NC_002947.3 similar to GP:9947837, and GP:9947837; identified by sequence similarity; hypothetical protein 3860225 1045596 PP_3411 Pseudomonas putida KT2440 hypothetical protein NP_745549.1 3859983 D 160488 CDS NP_745550.1 26990125 1045869 3860447..3861061 1 NC_002947.3 similar to GB:M28825, GB:M22080, GB:M22163, GB:M22164, GB:M22165, GB:M22166, GB:M22167, GB:X79309, GB:X79308, GB:M27735, GB:M14663, SP:P06126, PID:180046, and PID:530884; identified by sequence similarity; LuxR family transcriptional regulator 3861061 1045869 PP_3412 Pseudomonas putida KT2440 LuxR family transcriptional regulator NP_745550.1 3860447 D 160488 CDS NP_745551.1 26990126 1042718 3861075..3864356 1 NC_002947.3 similar to GB:L07555, GB:Z30426, GB:Z30430, GB:Z30427, GB:Z30429, GB:Z30428, SP:Q07108, PID:291898, PID:397939, and PID:558352; identified by sequence similarity; Hpt sensor hybrid histidine kinase 3864356 1042718 PP_3413 Pseudomonas putida KT2440 Hpt sensor hybrid histidine kinase NP_745551.1 3861075 D 160488 CDS NP_745552.1 26990127 1046248 complement(3864322..3865641) 1 NC_002947.3 similar to GB:Z15114, SP:P05129, and PID:35497; identified by sequence similarity; methyl-accepting chemotaxis transducer/sensory box protein 3865641 1046248 PP_3414 Pseudomonas putida KT2440 methyl-accepting chemotaxis transducer/sensory box protein NP_745552.1 3864322 R 160488 CDS NP_745553.1 26990128 1046272 complement(3865855..3866874) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00356; LacI family transcriptional regulator 3866874 1046272 PP_3415 Pseudomonas putida KT2440 LacI family transcriptional regulator NP_745553.1 3865855 R 160488 CDS NP_745554.1 26990129 1046375 3867081..3867620 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00041; thermoresistant glucokinase carbohydrate kinase 3867620 gnuK 1046375 gnuK Pseudomonas putida KT2440 thermoresistant glucokinase carbohydrate kinase NP_745554.1 3867081 D 160488 CDS NP_745555.1 26990130 1046240 3867732..3869084 1 NC_002947.3 similar to SP:Q9Z670; identified by sequence similarity; gluconate transporter 3869084 gntP 1046240 gntP Pseudomonas putida KT2440 gluconate transporter NP_745555.1 3867732 D 160488 CDS NP_745556.1 26990131 1046435 3869081..3869473 1 NC_002947.3 similar to GP:9800237; identified by sequence similarity; hypothetical protein 3869473 1046435 PP_3418 Pseudomonas putida KT2440 hypothetical protein NP_745556.1 3869081 D 160488 CDS NP_745557.1 26990132 1046273 complement(3869488..3870915) 1 NC_002947.3 similar to GB:X06182, GB:S68472, GB:X65959, GB:X69301, GB:X69302, GB:X69303, GB:X69304, GB:X69305, GB:X69306, GB:X69307, GB:X69308, GB:X69309, GB:X69310, GB:X69311, GB:X69312, GB:X69313, GB:X69314, GB:X69315, GB:X69316, GB:X72595, GB:X72599, SP:P10721, PID:34087, and PID:825686; identified by sequence similarity; Fis family transcriptional regulator 3870915 1046273 PP_3419 Pseudomonas putida KT2440 Fis family transcriptional regulator NP_745557.1 3869488 R 160488 CDS NP_745558.1 26990133 1046459 complement(3870884..3872377) 1 NC_002947.3 similar to GB:L10393, SP:P08048, SP:P17010, and PID:340436; identified by sequence similarity; sensor histidine kinase 3872377 1046459 PP_3420 Pseudomonas putida KT2440 sensor histidine kinase NP_745558.1 3870884 R 160488 CDS NP_745559.1 26990134 1046235 complement(3872685..3874136) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00512; sensor histidine kinase 3874136 1046235 PP_3421 Pseudomonas putida KT2440 sensor histidine kinase NP_745559.1 3872685 R 160488 CDS NP_745560.1 26990135 1045901 complement(3874311..3874904) 1 NC_002947.3 similar to GP:4680732, and GP:4680732; identified by sequence similarity; lytic transglycosylase 3874904 ltg 1045901 ltg Pseudomonas putida KT2440 lytic transglycosylase NP_745560.1 3874311 R 160488 CDS NP_745561.1 26990136 1046427 3875006..3875515 1 NC_002947.3 similar to GP:4680731, and GP:4680731; identified by sequence similarity; general secretion pathway protein G 3875515 xcpT-2 1046427 xcpT-2 Pseudomonas putida KT2440 general secretion pathway protein G NP_745561.1 3875006 D 160488 CDS NP_745562.1 26990137 1046352 3875506..3876717 1 NC_002947.3 similar to GP:4680733, and GP:17430616; identified by sequence similarity; type II secretion system protein 3876717 xcpS-2 1046352 xcpS-2 Pseudomonas putida KT2440 type II secretion system protein NP_745562.1 3875506 D 160488 CDS NP_745563.1 26990138 1045704 3876909..3878150 1 NC_002947.3 similar to GB:X73158, and PID:506943; identified by sequence similarity; RND family efflux transporter MFP subunit 3878150 mexE 1045704 mexE Pseudomonas putida KT2440 RND family efflux transporter MFP subunit NP_745563.1 3876909 D 160488 CDS NP_745564.1 26990139 1046214 3878163..3881342 1 NC_002947.3 similar to GB:X73158, and PID:506943; identified by sequence similarity; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 3881342 mexF 1046214 mexF Pseudomonas putida KT2440 hydrophobe/amphiphile efflux-1 (HAE1) family transporter NP_745564.1 3878163 D 160488 CDS NP_745565.1 26990140 1046237 3881339..3882754 1 NC_002947.3 similar to GB:X16050, SP:P12986, and PID:48339; identified by sequence similarity; NodT family RND efflux system outer membrane lipoprotein 3882754 oprN 1046237 oprN Pseudomonas putida KT2440 NodT family RND efflux system outer membrane lipoprotein NP_745565.1 3881339 D 160488 CDS NP_745566.1 26990141 1046469 3882835..3884034 1 NC_002947.3 identified by match to PFAM protein family HMM PF00515; hypothetical protein 3884034 1046469 PP_3428 Pseudomonas putida KT2440 hypothetical protein NP_745566.1 3882835 D 160488 CDS NP_745567.1 26990142 1045573 3884113..3885729 1 NC_002947.3 similar to GP:5052340; identified by sequence similarity; histidine kinase 3885729 1045573 PP_3429 Pseudomonas putida KT2440 histidine kinase NP_745567.1 3884113 D 160488 CDS NP_745568.1 26990143 1046479 complement(3885736..3887853) 1 NC_002947.3 similar to GP:4376185; identified by sequence similarity; PAS/PAC sensor hybrid histidine kinase 3887853 1046479 PP_3430 Pseudomonas putida KT2440 PAS/PAC sensor hybrid histidine kinase NP_745568.1 3885736 R 160488 CDS NP_745569.1 26990144 1046181 3887993..3888679 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01382; ThiJ/PfpI domain-containing protein 3888679 1046181 PP_3431 Pseudomonas putida KT2440 ThiJ/PfpI domain-containing protein NP_745569.1 3887993 D 160488 CDS NP_745570.1 26990145 1046174 3888809..3889615 1 NC_002947.3 similar to GP:9950000; identified by sequence similarity; hypothetical protein 3889615 1046174 PP_3432 Pseudomonas putida KT2440 hypothetical protein NP_745570.1 3888809 D 160488 CDS NP_745571.1 26990146 1046171 complement(3889639..3890715) 1 NC_002947.3 similar to GB:M34065, SP:P30307, PID:180176, GB:M34065, SP:P30307, and PID:180176; identified by sequence similarity; 4-hydroxyphenylpyruvate dioxygenase 3890715 hpd 1046171 hpd Pseudomonas putida KT2440 4-hydroxyphenylpyruvate dioxygenase NP_745571.1 3889639 R 160488 CDS NP_745572.1 26990147 1046231 complement(3890742..3890849) 1 NC_002947.3 hypothetical protein 3890849 1046231 PP_3434 Pseudomonas putida KT2440 hypothetical protein NP_745572.1 3890742 R 160488 CDS NP_745573.1 26990148 1046455 3891014..3892600 1 NC_002947.3 identified by match to PFAM protein family HMM PF00563; diguanylate phosphodiesterase 3892600 1046455 PP_3435 Pseudomonas putida KT2440 diguanylate phosphodiesterase NP_745573.1 3891014 D 160488 CDS NP_745574.1 26990149 1046480 3892634..3893521 1 NC_002947.3 similar to SP:P27844; identified by sequence similarity; RarD protein, DMT superfamily transporter 3893521 rarD-2 1046480 rarD-2 Pseudomonas putida KT2440 RarD protein, DMT superfamily transporter NP_745574.1 3892634 D 160488 CDS NP_745575.1 26990150 1046519 complement(3893484..3895055) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04290; hypothetical protein 3895055 1046519 PP_3437 Pseudomonas putida KT2440 hypothetical protein NP_745575.1 3893484 R 160488 CDS NP_745576.1 26990151 1046283 3895347..3895928 1 NC_002947.3 identified by match to PFAM protein family HMM PF01810; lysine exporter protein LysE/YggA 3895928 1046283 PP_3438 Pseudomonas putida KT2440 lysine exporter protein LysE/YggA NP_745576.1 3895347 D 160488 CDS NP_745577.1 26990152 1046513 complement(3895893..3896741) 1 NC_002947.3 similar to GP:7619749; identified by sequence similarity; AraC family transcriptional regulator 3896741 1046513 PP_3439 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_745577.1 3895893 R 160488 CDS NP_745578.1 26990153 1042720 complement(3896789..3897907) 1 NC_002947.3 hypothetical protein 3897907 1042720 PP_3440 Pseudomonas putida KT2440 hypothetical protein NP_745578.1 3896789 R 160488 CDS NP_745579.1 26990154 1045723 complement(3897981..3899135) 1 NC_002947.3 hypothetical protein 3899135 1045723 PP_3441 Pseudomonas putida KT2440 hypothetical protein NP_745579.1 3897981 R 160488 CDS NP_745580.1 26990155 1046173 complement(3899424..3899591) 1 NC_002947.3 hypothetical protein 3899591 1046173 PP_3442 Pseudomonas putida KT2440 hypothetical protein NP_745580.1 3899424 R 160488 CDS NP_745581.1 26990156 1045405 3899590..3901209 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01722; glyceraldehyde-3-phosphate dehydrogenase 3901209 1045405 PP_3443 Pseudomonas putida KT2440 glyceraldehyde-3-phosphate dehydrogenase NP_745581.1 3899590 D 160488 CDS NP_745582.1 26990157 1046195 3901320..3901799 1 NC_002947.3 identified by match to PFAM protein family HMM PF00903; glyoxalase/bleomycin resistance protein/dioxygenase 3901799 1046195 PP_3444 Pseudomonas putida KT2440 glyoxalase/bleomycin resistance protein/dioxygenase NP_745582.1 3901320 D 160488 CDS NP_745583.1 26990158 1045524 3901824..3903032 1 NC_002947.3 hypothetical protein 3903032 1045524 PP_3445 Pseudomonas putida KT2440 hypothetical protein NP_745583.1 3901824 D 160488 CDS NP_745584.1 26990159 1045566 complement(3903147..3904739) 1 NC_002947.3 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 3904739 ilvA-1 1045566 ilvA-1 Pseudomonas putida KT2440 threonine dehydratase NP_745584.1 3903147 R 160488 CDS NP_745585.1 26990160 1046472 complement(3904889..3905320) 1 NC_002947.3 similar to GP:5230850, and GP:9948836; identified by sequence similarity; transmembrane pair domain-containing protein 3905320 1046472 PP_3447 Pseudomonas putida KT2440 transmembrane pair domain-containing protein NP_745585.1 3904889 R 160488 CDS NP_745586.1 26990161 1046284 3905513..3907687 1 NC_002947.3 similar to GB:M11717, GB:M24743, SP:P08107, PID:188488, PID:188490, PID:188530, PID:32481, PID:32483, PID:386785, PID:639910, GB:M11717, GB:M24743, SP:P08107, PID:188488, PID:188490, PID:188530, PID:32481, PID:32483, PID:386785, and PID:639910; identified by sequence similarity; bacteriophage N4 adsorption protein B 3907687 nfrB 1046284 nfrB Pseudomonas putida KT2440 bacteriophage N4 adsorption protein B NP_745586.1 3905513 D 160488 CDS NP_745587.1 26990162 1046250 3907684..3908115 1 NC_002947.3 hypothetical protein 3908115 1046250 PP_3449 Pseudomonas putida KT2440 hypothetical protein NP_745587.1 3907684 D 160488 CDS NP_745588.2 161378127 1046318 3908049..3910688 1 NC_002947.3 hypothetical protein 3910688 1046318 PP_3450 Pseudomonas putida KT2440 hypothetical protein NP_745588.2 3908049 D 160488 CDS NP_745589.1 26990164 1042626 3910688..3911527 1 NC_002947.3 similar to SP:P28787, GB:X68129, PID:45902, SP:P28787, GB:X68129, and PID:45902; identified by sequence similarity; hypothetical protein 3911527 1042626 PP_3451 Pseudomonas putida KT2440 hypothetical protein NP_745589.1 3910688 D 160488 CDS NP_745590.1 26990165 1046316 3911652..3912743 1 NC_002947.3 similar to GB:U09422, and PID:532545; identified by sequence similarity; diguanylate cyclase 3912743 1046316 PP_3452 Pseudomonas putida KT2440 diguanylate cyclase NP_745590.1 3911652 D 160488 CDS NP_745591.1 26990166 1045599 complement(3912774..3914075) 1 NC_002947.3 similar to GB:M57730, GB:D17034, SP:P20827, and PID:179321; identified by sequence similarity; integral membrane sensor signal transduction histidine kinase 3914075 1045599 PP_3453 Pseudomonas putida KT2440 integral membrane sensor signal transduction histidine kinase NP_745591.1 3912774 R 160488 CDS NP_745592.1 26990167 1045523 complement(3914082..3914921) 1 NC_002947.3 similar to GB:X16453, SP:P13367, and PID:581343; identified by sequence similarity; winged helix family two component transcriptional regulator 3914921 1045523 PP_3454 Pseudomonas putida KT2440 winged helix family two component transcriptional regulator NP_745592.1 3914082 R 160488 CDS NP_745593.1 26990168 1045580 3915029..3916204 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01730; RND family efflux transporter MFP subunit 3916204 1045580 PP_3455 Pseudomonas putida KT2440 RND family efflux transporter MFP subunit NP_745593.1 3915029 D 160488 CDS NP_745594.1 26990169 1045525 3916216..3919344 1 NC_002947.3 identified by match to PFAM protein family HMM PF00873; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 3919344 1045525 PP_3456 Pseudomonas putida KT2440 hydrophobe/amphiphile efflux-1 (HAE1) family transporter NP_745594.1 3916216 D 160488 CDS NP_745595.1 26990170 1046501 3919406..3919981 1 NC_002947.3 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 3919981 mobA 1046501 mobA Pseudomonas putida KT2440 molybdopterin-guanine dinucleotide biosynthesis protein MobA NP_745595.1 3919406 D 160488 CDS NP_745596.1 26990171 1045574 complement(3920074..3921762) 1 NC_002947.3 activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 3921762 1045574 PP_3458 Pseudomonas putida KT2440 acyl-CoA synthetase NP_745596.1 3920074 R 160488 CDS NP_745597.1 26990172 1046276 complement(3921902..3923041) 1 NC_002947.3 hypothetical protein 3923041 1046276 PP_3459 Pseudomonas putida KT2440 hypothetical protein NP_745597.1 3921902 R 160488 CDS NP_745598.1 26990173 1045598 complement(3923055..3923378) 1 NC_002947.3 hypothetical protein 3923378 1045598 PP_3460 Pseudomonas putida KT2440 hypothetical protein NP_745598.1 3923055 R 160488 CDS NP_745599.1 26990174 1045597 complement(3923380..3924810) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04055; radical SAM domain-containing protein 3924810 1045597 PP_3461 Pseudomonas putida KT2440 radical SAM domain-containing protein NP_745599.1 3923380 R 160488 CDS NP_745600.1 26990175 1046274 3924835..3926526 1 NC_002947.3 hypothetical protein 3926526 1046274 PP_3462 Pseudomonas putida KT2440 hypothetical protein NP_745600.1 3924835 D 160488 CDS NP_745601.1 26990176 1046275 3926828..3928321 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01722; aldehyde dehydrogenase 3928321 1046275 PP_3463 Pseudomonas putida KT2440 aldehyde dehydrogenase NP_745601.1 3926828 D 160488 CDS NP_745602.1 26990177 1046241 3928461..3929774 1 NC_002947.3 hypothetical protein 3929774 1046241 PP_3464 Pseudomonas putida KT2440 hypothetical protein NP_745602.1 3928461 D 160488 CDS NP_745603.1 26990178 1045371 3931088..3931780 1 NC_002947.3 hypothetical protein 3931780 1045371 PP_3465 Pseudomonas putida KT2440 hypothetical protein NP_745603.1 3931088 D 160488 CDS NP_745604.1 26990179 1045372 complement(3931764..3933473) 1 NC_002947.3 similar to GB:D14037, and PID:436034; identified by sequence similarity; ABC transporter ATP-binding protein 3933473 1045372 PP_3466 Pseudomonas putida KT2440 ABC transporter ATP-binding protein NP_745604.1 3931764 R 160488 CDS NP_745605.1 26990180 1045526 complement(3933499..3935409) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02954; Fis family transcriptional regulator 3935409 1045526 PP_3467 Pseudomonas putida KT2440 Fis family transcriptional regulator NP_745605.1 3933499 R 160488 CDS NP_745606.1 26990181 1046438 complement(3935687..3936070) 1 NC_002947.3 hypothetical protein 3936070 1046438 PP_3468 Pseudomonas putida KT2440 hypothetical protein NP_745606.1 3935687 R 160488 CDS NP_745607.1 26990182 1045579 3936212..3937180 1 NC_002947.3 hypothetical protein 3937180 1045579 PP_3469 Pseudomonas putida KT2440 hypothetical protein NP_745607.1 3936212 D 160488 CDS NP_745608.1 26990183 1046434 3937996..3938793 1 NC_002947.3 hypothetical protein 3938793 1046434 PP_3471 Pseudomonas putida KT2440 hypothetical protein NP_745608.1 3937996 D 160488 CDS NP_745609.1 26990184 1046442 complement(3938975..3939823) 1 NC_002947.3 similar to GB:X64058, SP:P28762, GB:X64058, and SP:P28762; identified by sequence similarity; curli production protein CsgG 3939823 csgG 1046442 csgG Pseudomonas putida KT2440 curli production protein CsgG NP_745609.1 3938975 R 160488 CDS NP_745610.1 26990185 1045924 complement(3939858..3940271) 1 NC_002947.3 similar to SP:O54292, GB:X64058, and SP:P28762; identified by sequence similarity; curli fiber protein CsgF 3940271 1045924 PP_3473 Pseudomonas putida KT2440 curli fiber protein CsgF NP_745610.1 3939858 R 160488 CDS NP_745611.1 26990186 1046433 complement(3940268..3940669) 1 NC_002947.3 chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgE 3940669 1046433 PP_3474 Pseudomonas putida KT2440 curli assembly protein CsgE NP_745611.1 3940268 R 160488 CDS NP_745612.1 26990187 1046430 complement(3940666..3941196) 1 NC_002947.3 hypothetical protein 3941196 1046430 PP_3475 Pseudomonas putida KT2440 hypothetical protein NP_745612.1 3940666 R 160488 CDS NP_745613.1 26990188 1046439 complement(3941168..3941554) 1 NC_002947.3 similar to GP:5442041, and GP:17430939; identified by sequence similarity; type II secretion system protein G 3941554 1046439 PP_3476 Pseudomonas putida KT2440 type II secretion system protein G NP_745613.1 3941168 R 160488 CDS NP_745614.1 26990189 1046440 complement(3941548..3942027) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01710; hypothetical protein 3942027 1046440 PP_3477 Pseudomonas putida KT2440 hypothetical protein NP_745614.1 3941548 R 160488 CDS NP_745615.1 26990190 1046429 complement(3942024..3943889) 1 NC_002947.3 similar to GB:L27670, GB:L27671, GB:S78852, GB:S78853, PID:511641, and PID:511643; identified by sequence similarity; type II and III secretion system protein 3943889 1046429 PP_3478 Pseudomonas putida KT2440 type II and III secretion system protein NP_745615.1 3942024 R 160488 CDS NP_745616.1 26990191 1046488 3943877..3944410 1 NC_002947.3 hypothetical protein 3944410 1046488 PP_3479 Pseudomonas putida KT2440 hypothetical protein NP_745616.1 3943877 D 160488 CDS NP_745617.1 26990192 1045291 complement(3944392..3944955) 1 NC_002947.3 hypothetical protein 3944955 1045291 PP_3480 Pseudomonas putida KT2440 hypothetical protein NP_745617.1 3944392 R 160488 CDS NP_745618.1 26990193 1046436 complement(3944942..3945484) 1 NC_002947.3 hypothetical protein 3945484 1046436 PP_3481 Pseudomonas putida KT2440 hypothetical protein NP_745618.1 3944942 R 160488 CDS NP_745619.1 26990194 1046464 complement(3945486..3946295) 1 NC_002947.3 hypothetical protein 3946295 1046464 PP_3482 Pseudomonas putida KT2440 hypothetical protein NP_745619.1 3945486 R 160488 CDS NP_745620.1 26990195 1046425 complement(3946249..3948045) 1 NC_002947.3 similar to GB:U08434, and PID:487441; identified by sequence similarity; type II secretion system protein E 3948045 1046425 PP_3483 Pseudomonas putida KT2440 type II secretion system protein E NP_745620.1 3946249 R 160488 CDS NP_745621.1 26990196 1046321 complement(3948106..3948636) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00072; response regulator receiver protein 3948636 1046321 PP_3484 Pseudomonas putida KT2440 response regulator receiver protein NP_745621.1 3948106 R 160488 CDS NP_745622.1 26990197 1046431 complement(3948889..3949530) 1 NC_002947.3 similar to SP:P17161, GB:X03147, and PID:43926; identified by sequence similarity; hypothetical protein 3949530 1046431 PP_3485 Pseudomonas putida KT2440 hypothetical protein NP_745622.1 3948889 R 160488 CDS NP_745623.1 26990198 1046515 complement(3949543..3951222) 1 NC_002947.3 similar to GP:4704216; identified by sequence similarity; cytochrome c 3951222 1046515 PP_3486 Pseudomonas putida KT2440 cytochrome c NP_745623.1 3949543 R 160488 CDS NP_745624.1 26990199 1046428 complement(3951228..3951893) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02630; electron transport protein SCO1/SenC 3951893 1046428 PP_3487 Pseudomonas putida KT2440 electron transport protein SCO1/SenC NP_745624.1 3951228 R 160488 CDS NP_745625.1 26990200 1046481 complement(3951890..3952546) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02630; electron transport protein SCO1/SenC 3952546 1046481 PP_3488 Pseudomonas putida KT2440 electron transport protein SCO1/SenC NP_745625.1 3951890 R 160488 CDS NP_745626.1 26990201 1046514 3952501..3954438 1 NC_002947.3 identified by match to PFAM protein family HMM PF01087; hypothetical protein 3954438 1046514 PP_3489 Pseudomonas putida KT2440 hypothetical protein NP_745626.1 3952501 D 160488 CDS NP_745627.1 26990202 1046458 complement(3954538..3960450) 1 NC_002947.3 similar to GB:M60922, PID:793910, GB:M60922, and PID:793910; identified by sequence similarity; hypothetical protein 3960450 1046458 PP_3490 Pseudomonas putida KT2440 hypothetical protein NP_745627.1 3954538 R 160488 CDS NP_745628.1 26990203 1046422 3960710..3961783 1 NC_002947.3 similar to GP:2228238, and GP:11138233; identified by sequence similarity; enoly-coenzyme A hydratase/isomerase 3961783 1046422 PP_3491 Pseudomonas putida KT2440 enoly-coenzyme A hydratase/isomerase NP_745628.1 3960710 D 160488 CDS NP_745629.1 26990204 1046280 3961800..3962951 1 NC_002947.3 similar to SP:P45857; identified by sequence similarity; acyl-CoA dehydrogenase 3962951 acdA 1046280 acdA Pseudomonas putida KT2440 acyl-CoA dehydrogenase NP_745629.1 3961800 D 160488 CDS NP_745630.1 26990205 1041611 complement(3963068..3964000) 1 NC_002947.3 similar to GP:9945991; identified by sequence similarity; LysR family transcriptional regulator 3964000 1041611 PP_3493 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745630.1 3963068 R 160488 CDS NP_745631.1 26990206 1045591 3964120..3964380 1 NC_002947.3 hypothetical protein 3964380 1045591 PP_3494 Pseudomonas putida KT2440 hypothetical protein NP_745631.1 3964120 D 160488 CDS NP_745632.1 26990207 1045588 complement(3964382..3965074) 1 NC_002947.3 similar to GP:1813343, and GP:10173995; identified by sequence similarity; hypothetical protein 3965074 1045588 PP_3495 Pseudomonas putida KT2440 hypothetical protein NP_745632.1 3964382 R 160488 CDS NP_745633.1 26990208 1046421 3965193..3965591 1 NC_002947.3 similar to GB:J03732, SP:P03813, PID:145322, PID:882733, PID:1128956, GB:U00096, PID:1789205, GB:J03732, SP:P03813, PID:145322, PID:882733, PID:1128956, GB:U00096, and PID:1789205; identified by sequence similarity; endoribonuclease L-PSP 3965591 1046421 PP_3496 Pseudomonas putida KT2440 endoribonuclease L-PSP NP_745633.1 3965193 D 160488 CDS NP_745634.1 26990209 1046418 3965805..3967805 1 NC_002947.3 similar to SP:P76104; identified by sequence similarity; U32 family peptidase 3967805 1046418 PP_3497 Pseudomonas putida KT2440 U32 family peptidase NP_745634.1 3965805 D 160488 CDS NP_745635.1 26990210 1046420 3967990..3969048 1 NC_002947.3 similar to GB:X66899, GB:X72990, GB:X72991, GB:X72992, GB:X72993, GB:X72994, GB:X72995, GB:X72996, GB:X72997, GB:X72998, GB:X72999, GB:X73000, GB:X73001, GB:X73002, GB:X73003, GB:X73004, SP:Q01844, PID:1572086, PID:1666068, PID:31280, and PID:825654; identified by sequence similarity; ISPpu11, transposase 3969048 1046420 PP_3498 Pseudomonas putida KT2440 ISPpu11, transposase NP_745635.1 3967990 D 160488 CDS NP_745636.1 26990211 1046417 3969363..3969683 1 NC_002947.3 similar to GP:2773259, and GP:2773259; identified by sequence similarity; ISPpu14, transposase Orf1 3969683 1046417 PP_3499 Pseudomonas putida KT2440 ISPpu14, transposase Orf1 NP_745636.1 3969363 D 160488 CDS NP_745637.1 26990212 1045970 3969680..3970015 1 NC_002947.3 similar to GP:4928612, and GP:4928612; identified by sequence similarity; ISPpu14, transposase Orf2 3970015 1045970 PP_3500 Pseudomonas putida KT2440 ISPpu14, transposase Orf2 NP_745637.1 3969680 D 160488 CDS NP_745638.1 26990213 1043336 3970079..3971614 1 NC_002947.3 similar to GP:3414883, and GP:6009427; identified by sequence similarity; ISPpu14, transposase Orf3 3971614 1043336 PP_3501 Pseudomonas putida KT2440 ISPpu14, transposase Orf3 NP_745638.1 3970079 D 160488 CDS NP_745639.1 26990214 1046520 3971994..3972959 1 NC_002947.3 similar to GP:7741879; identified by sequence similarity; ISPpu10, transposase 3972959 1046520 PP_3502 Pseudomonas putida KT2440 ISPpu10, transposase NP_745639.1 3971994 D 160488 CDS NP_745640.1 26990215 1046185 complement(3973144..3974469) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01199; Fis family transcriptional regulator 3974469 1046185 PP_3503 Pseudomonas putida KT2440 Fis family transcriptional regulator NP_745640.1 3973144 R 160488 CDS NP_745641.1 26990216 1046414 3974810..3975076 1 NC_002947.3 similar to GP:9947840, and GP:9947840; identified by sequence similarity; hypothetical protein 3975076 1046414 PP_3504 Pseudomonas putida KT2440 hypothetical protein NP_745641.1 3974810 D 160488 CDS NP_745642.1 26990217 1046411 complement(3975183..3975773) 1 NC_002947.3 similar to GP:9949037; identified by sequence similarity; hypothetical protein 3975773 1046411 PP_3505 Pseudomonas putida KT2440 hypothetical protein NP_745642.1 3975183 R 160488 CDS NP_745643.1 26990218 1046408 complement(3975851..3976864) 1 NC_002947.3 similar to SP:P26239; identified by sequence similarity; magnesium chelatase 3976864 1046408 PP_3506 Pseudomonas putida KT2440 magnesium chelatase NP_745643.1 3975851 R 160488 CDS NP_745644.1 26990219 1045741 complement(3976866..3980627) 1 NC_002947.3 with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; cobaltochelatase subunit CobN 3980627 cobN 1045741 cobN Pseudomonas putida KT2440 cobaltochelatase subunit CobN NP_745644.1 3976866 R 160488 CDS NP_745645.1 26990220 1046508 complement(3980631..3981698) 1 NC_002947.3 similar to SP:P29937; identified by sequence similarity; cobalamin biosynthesis protein CobW 3981698 cobW 1046508 cobW Pseudomonas putida KT2440 cobalamin biosynthesis protein CobW NP_745645.1 3980631 R 160488 CDS NP_745646.1 26990221 1046409 3982105..3982482 1 NC_002947.3 identified by match to PFAM protein family HMM PF00903; glyoxalase 3982482 1046409 PP_3509 Pseudomonas putida KT2440 glyoxalase NP_745646.1 3982105 D 160488 CDS NP_745647.1 26990222 1044876 3982479..3982838 1 NC_002947.3 hypothetical protein 3982838 1044876 PP_3510 Pseudomonas putida KT2440 hypothetical protein NP_745647.1 3982479 D 160488 CDS NP_745648.1 26990223 1046413 3982984..3984003 1 NC_002947.3 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 3984003 ilvE 1046413 ilvE Pseudomonas putida KT2440 branched-chain amino acid aminotransferase NP_745648.1 3982984 D 160488 CDS NP_745649.1 26990224 1046412 complement(3984193..3984633) 1 NC_002947.3 similar to GP:9948970, and GP:9948970; identified by sequence similarity; transmembrane pair domain-containing protein 3984633 1046412 PP_3512 Pseudomonas putida KT2440 transmembrane pair domain-containing protein NP_745649.1 3984193 R 160488 CDS NP_745650.1 26990225 1046402 3984714..3985568 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 3985568 1046402 PP_3513 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745650.1 3984714 D 160488 CDS NP_745651.1 26990226 1046061 3985721..3987466 1 NC_002947.3 similar to GB:L04303, GB:L16991, SP:P23919, and PID:291900; identified by sequence similarity; hydantoinase B/oxoprolinase 3987466 hyuB 1046061 hyuB Pseudomonas putida KT2440 hydantoinase B/oxoprolinase NP_745651.1 3985721 D 160488 CDS NP_745652.1 26990227 1046319 3987480..3989564 1 NC_002947.3 similar to GP:2665710, GB:J00269, GB:L42575, GB:L42576, GB:L42577, GB:L42578, GB:L42579, GB:L42580, GB:L42581, GB:L42582, GB:L42583, GB:J00269, GB:L42603, GB:L42604, GB:L42605, GB:L42606, GB:L42607, GB:L42608, GB:L42609, GB:L42610, GB:L42602, SP:P02538, SP:P04259, SP:P48666, SP:P48667, SP:P48668, SP:P48669, PID:1335192, PID:34069, PID:386847, PID:908779, PID:908790, PID:908801, PID:908803, PID:908805, and PID:914833; identified by sequence similarity; 5-oxoprolinase 3989564 hyuA 1046319 hyuA Pseudomonas putida KT2440 5-oxoprolinase NP_745652.1 3987480 D 160488 CDS NP_745653.1 26990228 1046239 3989713..3990669 1 NC_002947.3 similar to GP:8218179; identified by sequence similarity; AraC family transcriptional regulator 3990669 1046239 PP_3516 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_745653.1 3989713 D 160488 CDS NP_745654.1 26990229 1046407 complement(3990730..3991623) 1 NC_002947.3 hypothetical protein 3991623 1046407 PP_3517 Pseudomonas putida KT2440 hypothetical protein NP_745654.1 3990730 R 160488 CDS NP_745655.1 26990230 1046406 complement(3991620..3993065) 1 NC_002947.3 similar to GB:L10126, GB:L31848, SP:P36896, PID:338215, PID:555934, PID:576681, PID:576682, PID:576683, GB:L10126, GB:L31848, SP:P36896, PID:338215, PID:555934, PID:576681, PID:576682, and PID:576683; identified by sequence similarity; hypothetical protein 3993065 1046406 PP_3518 Pseudomonas putida KT2440 hypothetical protein NP_745655.1 3991620 R 160488 CDS NP_745656.1 26990231 1046201 3993311..3993562 1 NC_002947.3 lipoprotein 3993562 1046201 PP_3519 Pseudomonas putida KT2440 lipoprotein NP_745656.1 3993311 D 160488 CDS NP_745657.1 26990232 1046309 3993644..3994363 1 NC_002947.3 similar to GP:9947023; identified by sequence similarity; hypothetical protein 3994363 1046309 PP_3520 Pseudomonas putida KT2440 hypothetical protein NP_745657.1 3993644 D 160488 CDS NP_745658.1 26990233 1046314 complement(3994360..3995232) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00892; hypothetical protein 3995232 1046314 PP_3521 Pseudomonas putida KT2440 hypothetical protein NP_745658.1 3994360 R 160488 CDS NP_745659.1 26990234 1046404 complement(3995382..3995804) 1 NC_002947.3 similar to GP:10175707, GB:M77142, and SP:P31483; identified by sequence similarity; endoribonuclease L-PSP 3995804 1046404 PP_3522 Pseudomonas putida KT2440 endoribonuclease L-PSP NP_745659.1 3995382 R 160488 CDS NP_745660.1 26990235 1046253 3995963..3996319 1 NC_002947.3 hypothetical protein 3996319 1046253 PP_3523 Pseudomonas putida KT2440 hypothetical protein NP_745660.1 3995963 D 160488 CDS NP_745661.1 26990236 1046306 complement(3996364..3996696) 1 NC_002947.3 hypothetical protein 3996696 1046306 PP_3524 Pseudomonas putida KT2440 hypothetical protein NP_745661.1 3996364 R 160488 CDS NP_745662.1 26990237 1046303 complement(3996680..3997159) 1 NC_002947.3 similar to GP:9950776, and GP:9950776; identified by sequence similarity; hypothetical protein 3997159 1046303 PP_3525 Pseudomonas putida KT2440 hypothetical protein NP_745662.1 3996680 R 160488 CDS NP_745663.1 26990238 1046310 3997312..3998319 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 3998319 1046310 PP_3526 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_745663.1 3997312 D 160488 CDS NP_745664.1 26990239 1046509 complement(3998358..3999041) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 3999041 1046509 PP_3527 Pseudomonas putida KT2440 TetR family transcriptional regulator NP_745664.1 3998358 R 160488 CDS NP_745665.1 26990240 1046302 3999313..4000299 1 NC_002947.3 similar to GP:3420605; identified by sequence similarity; aliphatic sulfonate ABC transporter substrate-binding protein 4000299 1046302 PP_3528 Pseudomonas putida KT2440 aliphatic sulfonate ABC transporter substrate-binding protein NP_745665.1 3999313 D 160488 CDS NP_745666.1 26990241 1046311 4000316..4001680 1 NC_002947.3 monooxygenase 4001680 1046311 PP_3529 Pseudomonas putida KT2440 monooxygenase NP_745666.1 4000316 D 160488 CDS NP_745667.1 26990242 1046307 4001814..4002650 1 NC_002947.3 similar to GP:9947061, and GP:9947061; identified by sequence similarity; hypothetical protein 4002650 1046307 PP_3530 Pseudomonas putida KT2440 hypothetical protein NP_745667.1 4001814 D 160488 CDS NP_745668.1 26990243 1046305 4002740..4003339 1 NC_002947.3 similar to GP:9947542; identified by sequence similarity; lipid-binding START domain-containing protein 4003339 1046305 PP_3531 Pseudomonas putida KT2440 lipid-binding START domain-containing protein NP_745668.1 4002740 D 160488 CDS NP_745669.1 26990244 1045576 complement(4003422..4003844) 1 NC_002947.3 similar to GP:3128284; identified by sequence similarity; AsnC family transcriptional regulator 4003844 1045576 PP_3532 Pseudomonas putida KT2440 AsnC family transcriptional regulator NP_745669.1 4003422 R 160488 CDS NP_745670.1 26990245 1046312 4004032..4005084 1 NC_002947.3 catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 4005084 1046312 PP_3533 Pseudomonas putida KT2440 ornithine cyclodeaminase NP_745670.1 4004032 D 160488 CDS NP_745671.1 26990246 1046478 complement(4005156..4006037) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 4006037 1046478 PP_3534 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745671.1 4005156 R 160488 CDS NP_745672.1 26990247 1045350 complement(4006082..4007872) 1 NC_002947.3 similar to GB:X62083, GB:M80613, SP:P25440, PID:1370115, PID:182769, PID:2181873, PID:2181875, PID:31472, and PID:577293; identified by sequence similarity; gamma-glutamyltransferase 4007872 ggt-1 1045350 ggt-1 Pseudomonas putida KT2440 gamma-glutamyltransferase NP_745672.1 4006082 R 160488 CDS NP_745673.1 26990248 1046463 complement(4008079..4009167) 1 NC_002947.3 hypothetical protein 4009167 1046463 PP_3536 Pseudomonas putida KT2440 hypothetical protein NP_745673.1 4008079 R 160488 CDS NP_745674.1 26990249 1045564 complement(4009429..4010616) 1 NC_002947.3 catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase 4010616 pobA 1045564 pobA Pseudomonas putida KT2440 4-hydroxybenzoate 3-monooxygenase NP_745674.1 4009429 R 160488 CDS NP_745675.1 26990250 1046313 4010790..4011668 1 NC_002947.3 similar to GP:6682325, and GP:6682325; identified by sequence similarity; AraC family transcriptional regulator 4011668 pobR 1046313 pobR Pseudomonas putida KT2440 AraC family transcriptional regulator NP_745675.1 4010790 D 160488 CDS NP_745676.1 26990251 1046369 4011744..4012142 1 NC_002947.3 identified by match to PFAM protein family HMM PF00376; transcriptional regulator 4012142 1046369 PP_3539 Pseudomonas putida KT2440 transcriptional regulator NP_745676.1 4011744 D 160488 CDS NP_745677.1 26990252 1045560 4012162..4013061 1 NC_002947.3 catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA; hydroxymethylglutaryl-CoA lyase 4013061 mvaB 1045560 mvaB Pseudomonas putida KT2440 hydroxymethylglutaryl-CoA lyase NP_745677.1 4012162 D 160488 CDS NP_745678.1 26990253 1045375 complement(4013594..4014112) 1 NC_002947.3 similar to GP:5508829; identified by sequence similarity; Mg2+ transporter 4014112 1045375 PP_3541 Pseudomonas putida KT2440 Mg2+ transporter NP_745678.1 4013594 R 160488 CDS NP_745679.1 26990254 1045561 4014281..4014520 1 NC_002947.3 similar to GP:9948025, and GP:9948025; identified by sequence similarity; hypothetical protein 4014520 1045561 PP_3542 Pseudomonas putida KT2440 hypothetical protein NP_745679.1 4014281 D 160488 CDS NP_745680.1 26990255 1045563 4014642..4016045 1 NC_002947.3 similar to GB:X69699, SP:Q06710, PID:307321, and PID:553607; identified by sequence similarity; (Fe-S)-binding protein 4016045 1045563 PP_3543 Pseudomonas putida KT2440 (Fe-S)-binding protein NP_745680.1 4014642 D 160488 CDS NP_745681.1 26990256 1045565 4016096..4017505 1 NC_002947.3 identified by match to PFAM protein family HMM PF00392; GntR family transcriptional regulator 4017505 1045565 PP_3544 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_745681.1 4016096 D 160488 CDS NP_745682.1 26990257 1045374 4017563..4019224 1 NC_002947.3 similar to GP:4376185; identified by sequence similarity; PAS/PAC sensor hybrid histidine kinase 4019224 1045374 PP_3545 Pseudomonas putida KT2440 PAS/PAC sensor hybrid histidine kinase NP_745682.1 4017563 D 160488 CDS NP_745683.1 26990258 1045377 4019287..4021353 1 NC_002947.3 similar to GP:5052340; identified by sequence similarity; PAS/PAC sensor hybrid histidine kinase 4021353 1045377 PP_3546 Pseudomonas putida KT2440 PAS/PAC sensor hybrid histidine kinase NP_745683.1 4019287 D 160488 CDS NP_745684.1 26990259 1045378 complement(4021361..4022107) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01500; short chain dehydrogenase/reductase oxidoreductase 4022107 1045378 PP_3547 Pseudomonas putida KT2440 short chain dehydrogenase/reductase oxidoreductase NP_745684.1 4021361 R 160488 CDS NP_745685.1 26990260 1045281 complement(4022970..4024505) 1 NC_002947.3 similar to GB:M80629, and PID:180492; identified by sequence similarity; EmrB/QacA family drug resistance transporter 4024505 1045281 PP_3548 Pseudomonas putida KT2440 EmrB/QacA family drug resistance transporter NP_745685.1 4022970 R 160488 CDS NP_745686.1 26990261 1046243 complement(4024502..4025695) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01730; secretion protein HlyD family protein 4025695 emrA 1046243 emrA Pseudomonas putida KT2440 secretion protein HlyD family protein NP_745686.1 4024502 R 160488 CDS NP_745687.1 26990262 1046242 complement(4025726..4026199) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03551; MarR family transcriptional regulator 4026199 1046242 PP_3550 Pseudomonas putida KT2440 MarR family transcriptional regulator NP_745687.1 4025726 R 160488 CDS NP_745688.1 26990263 1046236 complement(4026378..4027010) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00072; LuxR family transcriptional regulator 4027010 1046236 PP_3551 Pseudomonas putida KT2440 LuxR family transcriptional regulator NP_745688.1 4026378 R 160488 CDS NP_745689.1 26990264 1045592 complement(4027020..4028426) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02518; PAS/PAC sensor signal transduction histidine kinase 4028426 1045592 PP_3552 Pseudomonas putida KT2440 PAS/PAC sensor signal transduction histidine kinase NP_745689.1 4027020 R 160488 CDS NP_745690.1 26990265 1046233 4028620..4030242 1 NC_002947.3 activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 4030242 1046233 PP_3553 Pseudomonas putida KT2440 acyl-CoA synthetase NP_745690.1 4028620 D 160488 CDS NP_745691.1 26990266 1046234 4030335..4032104 1 NC_002947.3 identified by match to PFAM protein family HMM PF00441; acyl-CoA dehydrogenase 4032104 1046234 PP_3554 Pseudomonas putida KT2440 acyl-CoA dehydrogenase NP_745691.1 4030335 D 160488 CDS NP_745692.1 26990267 1045590 4032360..4033367 1 NC_002947.3 similar to GP:9948429; identified by sequence similarity; FecR anti-FecI sigma factor 4033367 1045590 PP_3555 Pseudomonas putida KT2440 FecR anti-FecI sigma factor NP_745692.1 4032360 D 160488 CDS NP_745693.1 26990268 1045593 complement(4033381..4034700) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04172; Na+/H+ antiporter NhaC 4034700 1045593 PP_3556 Pseudomonas putida KT2440 Na+/H+ antiporter NhaC NP_745693.1 4033381 R 160488 CDS NP_745694.1 26990269 1045201 4034947..4037091 1 NC_002947.3 identified by match to PFAM protein family HMM PF00672; methyl-accepting chemotaxis transducer 4037091 1045201 PP_3557 Pseudomonas putida KT2440 methyl-accepting chemotaxis transducer NP_745694.1 4034947 D 160488 CDS NP_745695.1 26990270 1045582 4037186..4038202 1 NC_002947.3 identified by match to PFAM protein family HMM PF04069; glycine betaine ABC transporter substrate-binding protein 4038202 1045582 PP_3558 Pseudomonas putida KT2440 glycine betaine ABC transporter substrate-binding protein NP_745695.1 4037186 D 160488 CDS NP_745696.1 26990271 1045571 4038148..4039047 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01183; binding-protein-dependent transport system inner membrane protein 4039047 1045571 PP_3559 Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_745696.1 4038148 D 160488 CDS NP_745697.1 26990272 1046277 4039141..4040004 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 4040004 1046277 PP_3560 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745697.1 4039141 D 160488 CDS NP_745698.1 26990273 1045585 4040110..4041057 1 NC_002947.3 similar to GP:9951798; identified by sequence similarity; auxin efflux carrier 4041057 1045585 PP_3561 Pseudomonas putida KT2440 auxin efflux carrier NP_745698.1 4040110 D 160488 CDS NP_745699.1 26990274 1045581 4041050..4041703 1 NC_002947.3 hypothetical protein 4041703 1045581 PP_3562 Pseudomonas putida KT2440 hypothetical protein NP_745699.1 4041050 D 160488 CDS NP_745700.1 26990275 1045583 4041910..4042761 1 NC_002947.3 similar to GP:9947059, and GP:9947059; identified by sequence similarity; hypothetical protein 4042761 1045583 PP_3563 Pseudomonas putida KT2440 hypothetical protein NP_745700.1 4041910 D 160488 CDS NP_745701.1 26990276 1046279 complement(4042763..4043740) 1 NC_002947.3 similar to GP:9951713; identified by sequence similarity; AraC family transcriptional regulator 4043740 1046279 PP_3564 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_745701.1 4042763 R 160488 CDS NP_745702.1 26990277 1046333 4043845..4044456 1 NC_002947.3 similar to SP:P27847; identified by sequence similarity; amino acid transporter LysE 4044456 1046333 PP_3565 Pseudomonas putida KT2440 amino acid transporter LysE NP_745702.1 4043845 D 160488 CDS NP_745703.1 26990278 1046332 complement(4044505..4045704) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00083; major facilitator family transporter 4045704 1046332 PP_3566 Pseudomonas putida KT2440 major facilitator family transporter NP_745703.1 4044505 R 160488 CDS NP_745704.1 26990279 1046226 complement(4045811..4046716) 1 NC_002947.3 similar to GP:3169721; identified by sequence similarity; LysR family transcriptional regulator 4046716 1046226 PP_3567 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745704.1 4045811 R 160488 CDS NP_745705.1 26990280 1045569 4046834..4047184 1 NC_002947.3 similar to GB:S73775, SP:P31415, GB:S73775, and SP:P31415; identified by sequence similarity; hypothetical protein 4047184 1045569 PP_3568 Pseudomonas putida KT2440 hypothetical protein NP_745705.1 4046834 D 160488 CDS NP_745706.1 26990281 1045587 4047447..4049864 1 NC_002947.3 similar to SP:Q9XD78; identified by sequence similarity; quinate dehydrogenase 4049864 1045587 PP_3569 Pseudomonas putida KT2440 quinate dehydrogenase NP_745706.1 4047447 D 160488 CDS NP_745707.1 26990282 1046336 4050043..4051233 1 NC_002947.3 similar to GB:M26683, GB:X60001, GB:S71513, GB:X14768, GB:M37719, GB:M24545, GB:M30816, GB:M31625, GB:M31626, GB:M28223, GB:M28224, GB:M28225, GB:M28226, GB:D26087, and SP:P13500; identified by sequence similarity; carbohydrate-selective porin OprB 4051233 1046336 PP_3570 Pseudomonas putida KT2440 carbohydrate-selective porin OprB NP_745707.1 4050043 D 160488 CDS NP_745708.1 26990283 1046228 complement(4051276..4052451) 1 NC_002947.3 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 4052451 1046228 PP_3571 Pseudomonas putida KT2440 acetylornithine deacetylase NP_745708.1 4051276 R 160488 CDS NP_745709.1 26990284 1046172 complement(4052429..4053106) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01662; hypothetical protein 4053106 1046172 PP_3572 Pseudomonas putida KT2440 hypothetical protein NP_745709.1 4052429 R 160488 CDS NP_745710.1 26990285 1042707 4053424..4054743 1 NC_002947.3 identified by match to PFAM protein family HMM PF00070; monooxygenase 4054743 1042707 PP_3573 Pseudomonas putida KT2440 monooxygenase NP_745710.1 4053424 D 160488 CDS NP_745711.1 26990286 1045182 4054767..4055159 1 NC_002947.3 similar to GB:U05875, GB:U05877, GB:X88209, SP:P38484, PID:1669506, PID:463550, and PID:463552; identified by sequence similarity; endoribonuclease L-PSP 4055159 1045182 PP_3574 Pseudomonas putida KT2440 endoribonuclease L-PSP NP_745711.1 4054767 D 160488 CDS NP_745712.1 26990287 1046354 complement(4055253..4057658) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00593; TonB-dependent siderophore receptor 4057658 1046354 PP_3575 Pseudomonas putida KT2440 TonB-dependent siderophore receptor NP_745712.1 4055253 R 160488 CDS NP_745713.1 26990288 1046225 complement(4057726..4058670) 1 NC_002947.3 similar to GB:L06139, SP:Q02763, and PID:292824; identified by sequence similarity; FecR anti-FecI sigma factor 4058670 1046225 PP_3576 Pseudomonas putida KT2440 FecR anti-FecI sigma factor NP_745713.1 4057726 R 160488 CDS NP_745714.1 26990289 1046334 complement(4058667..4059179) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00776; ECF subfamily RNA polymerase sigma factor 4059179 1046334 PP_3577 Pseudomonas putida KT2440 ECF subfamily RNA polymerase sigma factor NP_745714.1 4058667 R 160488 CDS NP_745715.1 26990290 1046356 complement(4059258..4060895) 1 NC_002947.3 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 4060895 1046356 PP_3578 Pseudomonas putida KT2440 phosphoglucomutase NP_745715.1 4059258 R 160488 CDS NP_745716.1 26990291 1046324 4061069..4061716 1 NC_002947.3 similar to GB:L12006, SP:Q05596, PID:154435, GB:L12006, SP:Q05596, and PID:154435; identified by sequence similarity; hypothetical protein 4061716 1046324 PP_3579 Pseudomonas putida KT2440 hypothetical protein NP_745716.1 4061069 D 160488 CDS NP_745717.1 26990292 1046281 4061946..4062251 1 NC_002947.3 hypothetical protein 4062251 1046281 PP_3580 Pseudomonas putida KT2440 hypothetical protein NP_745717.1 4061946 D 160488 CDS NP_745718.1 26990293 1046230 complement(4062248..4064335) 1 NC_002947.3 similar to GP:9947703; identified by sequence similarity; diguanylate cyclase 4064335 1046230 PP_3581 Pseudomonas putida KT2440 diguanylate cyclase NP_745718.1 4062248 R 160488 CDS NP_745719.1 26990294 1046353 complement(4064466..4065956) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02321; RND efflux transporter 4065956 1046353 PP_3582 Pseudomonas putida KT2440 RND efflux transporter NP_745719.1 4064466 R 160488 CDS NP_745720.1 26990295 1046361 complement(4065953..4069060) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00915; acriflavin resistance protein 4069060 1046361 PP_3583 Pseudomonas putida KT2440 acriflavin resistance protein NP_745720.1 4065953 R 160488 CDS NP_745721.1 26990296 1046398 complement(4072151..4073458) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01730; RND family efflux transporter MFP subunit 4073458 1046398 PP_3585 Pseudomonas putida KT2440 RND family efflux transporter MFP subunit NP_745721.1 4072151 R 160488 CDS NP_745722.1 26990297 1046373 complement(4074082..4075410) 1 NC_002947.3 similar to GP:6723233; identified by sequence similarity; ISPpu9, transposase 4075410 1046373 PP_3586 Pseudomonas putida KT2440 ISPpu9, transposase NP_745722.1 4074082 R 160488 CDS NP_745723.1 26990298 1046360 complement(4075851..4076351) 1 NC_002947.3 similar to SP:P57669; identified by sequence similarity; redoxin domain-containing protein 4076351 tpx 1046360 tpx Pseudomonas putida KT2440 redoxin domain-containing protein NP_745723.1 4075851 R 160488 CDS NP_745724.1 26990299 1046359 4076652..4077839 1 NC_002947.3 similar to GP:474915; identified by sequence similarity; Bcr/CflA family multidrug resistance transporter 4077839 1046359 PP_3588 Pseudomonas putida KT2440 Bcr/CflA family multidrug resistance transporter NP_745724.1 4076652 D 160488 CDS NP_745725.1 26990300 1046374 complement(4077912..4079192) 1 NC_002947.3 similar to GB:X57766, SP:P24347, PID:456257, and PID:987949; identified by sequence similarity; aromatic amino acid ABC transporter permease 4079192 sdaC 1046374 sdaC Pseudomonas putida KT2440 aromatic amino acid ABC transporter permease NP_745725.1 4077912 R 160488 CDS NP_745726.1 26990301 1045962 complement(4079576..4080772) 1 NC_002947.3 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 4080772 tyrB-2 1045962 tyrB-2 Pseudomonas putida KT2440 aromatic amino acid aminotransferase NP_745726.1 4079576 R 160488 CDS NP_745727.1 26990302 1046365 complement(4080935..4081933) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02615; malate/L-lactate dehydrogenase 4081933 1046365 PP_3591 Pseudomonas putida KT2440 malate/L-lactate dehydrogenase NP_745727.1 4080935 R 160488 CDS NP_745728.1 26990303 1046364 4082052..4082975 1 NC_002947.3 identified by match to PFAM protein family HMM PF01418; RpiR family transcriptional regulator 4082975 1046364 PP_3592 Pseudomonas putida KT2440 RpiR family transcriptional regulator NP_745728.1 4082052 D 160488 CDS NP_745729.1 26990304 1043915 4082998..4083750 1 NC_002947.3 identified by match to PFAM protein family HMM PF00497; amino acid ABC transporter substrate-binding protein 4083750 1043915 PP_3593 Pseudomonas putida KT2440 amino acid ABC transporter substrate-binding protein NP_745729.1 4082998 D 160488 CDS NP_745730.1 26990305 1046385 4083855..4084574 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01726; polar amino acid ABC transporter inner membrane subunit 4084574 1046385 PP_3594 Pseudomonas putida KT2440 polar amino acid ABC transporter inner membrane subunit NP_745730.1 4083855 D 160488 CDS NP_745731.1 26990306 1046371 4084571..4085281 1 NC_002947.3 similar to GB:X52425, SP:P24394, and PID:33834; identified by sequence similarity; polar amino acid ABC transporter inner membrane subunit 4085281 1046371 PP_3595 Pseudomonas putida KT2440 polar amino acid ABC transporter inner membrane subunit NP_745731.1 4084571 D 160488 CDS NP_745732.1 26990307 1046370 4085298..4086542 1 NC_002947.3 identified by match to PFAM protein family HMM PF01266; FAD dependent oxidoreductase 4086542 1046370 PP_3596 Pseudomonas putida KT2440 FAD dependent oxidoreductase NP_745732.1 4085298 D 160488 CDS NP_745733.1 26990308 1046384 4086565..4087347 1 NC_002947.3 similar to GP:2961079; identified by sequence similarity; amino acid ABC transporter ATP-binding protein 4087347 1046384 PP_3597 Pseudomonas putida KT2440 amino acid ABC transporter ATP-binding protein NP_745733.1 4086565 D 160488 CDS NP_745734.1 26990309 1046443 4087773..4088582 1 NC_002947.3 similar to SP:P76038; identified by sequence similarity; peptidase C26 4088582 1046443 PP_3598 Pseudomonas putida KT2440 peptidase C26 NP_745734.1 4087773 D 160488 CDS NP_745735.1 26990310 1046377 4088930..4089841 1 NC_002947.3 catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate; 5-dehydro-4-deoxyglucarate dehydratase 4089841 1046377 PP_3599 Pseudomonas putida KT2440 5-dehydro-4-deoxyglucarate dehydratase NP_745735.1 4088930 D 160488 CDS NP_745736.1 26990311 1046381 4089946..4091310 1 NC_002947.3 similar to SP:P31457, GB:M11953, GB:L10120, GB:X61441, PID:2218035, PID:2275585, PID:292779, PID:338868, PID:37450, PID:553696, PID:553702, PID:975610, and PID:975611; identified by sequence similarity; d-galactonate transporter 4091310 1046381 PP_3600 Pseudomonas putida KT2440 d-galactonate transporter NP_745736.1 4089946 D 160488 CDS NP_745737.1 26990312 1046232 4091388..4092941 1 NC_002947.3 similar to GB:L07044, PID:975881, and PID:975883; identified by sequence similarity; D-galactarate dehydratase 4092941 1046232 PP_3601 Pseudomonas putida KT2440 D-galactarate dehydratase NP_745737.1 4091388 D 160488 CDS NP_745738.1 26990313 1046445 4093000..4094580 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01722; ketoglutarate semialdehyde dehydrogenase 4094580 1046445 PP_3602 Pseudomonas putida KT2440 ketoglutarate semialdehyde dehydrogenase NP_745738.1 4093000 D 160488 CDS NP_745739.1 26990314 1046383 complement(4094715..4095479) 1 NC_002947.3 similar to GP:10174453; identified by sequence similarity; GntR family transcriptional regulator 4095479 1046383 PP_3603 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_745739.1 4094715 R 160488 CDS NP_745740.1 26990315 1045686 complement(4096402..4096734) 1 NC_002947.3 hypothetical protein 4096734 1045686 PP_3604 Pseudomonas putida KT2440 hypothetical protein NP_745740.1 4096402 R 160488 CDS NP_745741.1 26990316 1046444 complement(4096751..4097671) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 4097671 1046444 PP_3605 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745741.1 4096751 R 160488 CDS NP_745742.1 26990317 1045370 complement(4097711..4098685) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01751; quinone oxidoreductase 4098685 qor-2 1045370 qor-2 Pseudomonas putida KT2440 quinone oxidoreductase NP_745742.1 4097711 R 160488 CDS NP_745743.1 26990318 1046315 complement(4098799..4100013) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04143; hypothetical protein 4100013 1046315 PP_3607 Pseudomonas putida KT2440 hypothetical protein NP_745743.1 4098799 R 160488 CDS NP_745744.1 26990319 1046386 4100123..4101052 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 4101052 1046386 PP_3608 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745744.1 4100123 D 160488 CDS NP_745745.1 26990320 1046506 complement(4101053..4101583) 1 NC_002947.3 hypothetical protein 4101583 1046506 PP_3609 Pseudomonas putida KT2440 hypothetical protein NP_745745.1 4101053 R 160488 CDS NP_745746.1 26990321 1042699 4101748..4102512 1 NC_002947.3 hypothetical protein 4102512 1042699 PP_3610 Pseudomonas putida KT2440 hypothetical protein NP_745746.1 4101748 D 160488 CDS NP_745747.1 26990322 1046500 complement(4102660..4103241) 1 NC_002947.3 hypothetical protein 4103241 1046500 PP_3611 Pseudomonas putida KT2440 hypothetical protein NP_745747.1 4102660 R 160488 CDS NP_745748.1 26990323 1041989 4103278..4105590 1 NC_002947.3 similar to GP:5712714; identified by sequence similarity; TonB-dependent siderophore receptor 4105590 1041989 PP_3612 Pseudomonas putida KT2440 TonB-dependent siderophore receptor NP_745748.1 4103278 D 160488 CDS NP_745749.1 26990324 1046389 complement(4105675..4106967) 1 NC_002947.3 similar to GP:9948458, GB:U10362, and PID:505652; identified by sequence similarity; L-sorbosone dehydrogenase 4106967 1046389 PP_3613 Pseudomonas putida KT2440 L-sorbosone dehydrogenase NP_745749.1 4105675 R 160488 CDS NP_745750.1 26990325 1045570 complement(4106964..4107392) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01127; hypothetical protein 4107392 1045570 PP_3614 Pseudomonas putida KT2440 hypothetical protein NP_745750.1 4106964 R 160488 CDS NP_745751.1 26990326 1046357 4107456..4107842 1 NC_002947.3 hypothetical protein 4107842 1046357 PP_3615 Pseudomonas putida KT2440 hypothetical protein NP_745751.1 4107456 D 160488 CDS NP_745752.1 26990327 1045589 4108175..4111165 1 NC_002947.3 hypothetical protein 4111165 1045589 PP_3616 Pseudomonas putida KT2440 hypothetical protein NP_745752.1 4108175 D 160488 CDS NP_745753.1 26990328 1046518 4111168..4112064 1 NC_002947.3 hypothetical protein 4112064 1046518 PP_3617 Pseudomonas putida KT2440 hypothetical protein NP_745753.1 4111168 D 160488 CDS NP_745754.1 26990329 1046238 4112214..4113107 1 NC_002947.3 hypothetical protein 4113107 1046238 PP_3618 Pseudomonas putida KT2440 hypothetical protein NP_745754.1 4112214 D 160488 CDS NP_745755.1 26990330 1046286 4113353..4114249 1 NC_002947.3 hypothetical protein 4114249 1046286 PP_3619 Pseudomonas putida KT2440 hypothetical protein NP_745755.1 4113353 D 160488 CDS NP_745756.1 26990331 1046368 complement(4114395..4116581) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00702; hypothetical protein 4116581 1046368 PP_3620 Pseudomonas putida KT2440 hypothetical protein NP_745756.1 4114395 R 160488 CDS NP_745757.1 26990332 1041620 4116852..4117307 1 NC_002947.3 similar to GB:U09367, SP:P52737, and PID:487785; identified by sequence similarity; (2Fe-2S)-binding protein 4117307 1041620 PP_3621 Pseudomonas putida KT2440 (2Fe-2S)-binding protein NP_745757.1 4116852 D 160488 CDS NP_745758.1 26990333 1046460 4117307..4119562 1 NC_002947.3 similar to GB:U09367, SP:P52737, and PID:487785; identified by sequence similarity; isoquinoline 1-oxidoreductase subunit beta 4119562 1046460 PP_3622 Pseudomonas putida KT2440 isoquinoline 1-oxidoreductase subunit beta NP_745758.1 4117307 D 160488 CDS NP_745759.1 26990334 1046487 4119581..4120924 1 NC_002947.3 similar to GB:J03464, GB:Y00724, GB:X55525, GB:X03892, GB:J00114, GB:K02568, GB:M21353, GB:M21671, GB:M28985, GB:K02046, GB:M22816, GB:S98904, GB:M64229, GB:M22817, GB:M35391, GB:M21189, GB:K01078, GB:M31886, GB:S41101, GB:S59218, GB:S59211, GB:V00503, GB:X02488, SP:P08123, PID:1418930, PID:179596, PID:179603, PID:179634, PID:180394, PID:180882, PID:189685, PID:190305, PID:2078468, PID:2388555, PID:30023, PID:30102, PID:553606, and PID:825646; identified by sequence similarity; gluconate 2-dehydrogenase 4120924 1046487 PP_3623 Pseudomonas putida KT2440 gluconate 2-dehydrogenase NP_745759.1 4119581 D 160488 CDS NP_745760.1 26990335 1046366 complement(4120994..4121782) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01096; hypothetical protein 4121782 1046366 PP_3624 Pseudomonas putida KT2440 hypothetical protein NP_745760.1 4120994 R 160488 CDS NP_745761.1 26990336 1046326 complement(4121990..4122631) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01810; amino acid transporter LysE 4122631 1046326 PP_3625 Pseudomonas putida KT2440 amino acid transporter LysE NP_745761.1 4121990 R 160488 CDS NP_745762.1 26990337 1045438 complement(4122682..4122882) 1 NC_002947.3 similar to GP:9949921; identified by sequence similarity; hypothetical protein 4122882 1045438 PP_3626 Pseudomonas putida KT2440 hypothetical protein NP_745762.1 4122682 R 160488 CDS NP_745763.1 26990338 1046182 complement(4122891..4123208) 1 NC_002947.3 hypothetical protein 4123208 1046182 PP_3627 Pseudomonas putida KT2440 hypothetical protein NP_745763.1 4122891 R 160488 CDS NP_745764.1 26990339 1046415 4123522..4125267 1 NC_002947.3 similar to GP:4584486; identified by sequence similarity; choline/carnitine/betaine transporter 4125267 1046415 PP_3628 Pseudomonas putida KT2440 choline/carnitine/betaine transporter NP_745764.1 4123522 D 160488 CDS NP_745765.1 26990340 1045222 complement(4125348..4125827) 1 NC_002947.3 similar to GP:9948797, and GP:9948797; identified by sequence similarity; 3-demethylubiquinone-9 3-methyltransferase 4125827 1045222 PP_3629 Pseudomonas putida KT2440 3-demethylubiquinone-9 3-methyltransferase NP_745765.1 4125348 R 160488 CDS NP_745766.1 26990341 1046456 complement(4126013..4127356) 1 NC_002947.3 similar to GP:2645844; identified by sequence similarity; porin 4127356 1046456 PP_3630 Pseudomonas putida KT2440 porin NP_745766.1 4126013 R 160488 CDS NP_745767.1 26990342 1045712 4127628..4128278 1 NC_002947.3 similar to GP:9950361; identified by sequence similarity; hypothetical protein 4128278 1045712 PP_3631 Pseudomonas putida KT2440 hypothetical protein NP_745767.1 4127628 D 160488 CDS NP_745768.1 26990343 1045920 complement(4128345..4129223) 1 NC_002947.3 similar to GP:6580639; identified by sequence similarity; LysR family transcriptional regulator 4129223 1045920 PP_3632 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745768.1 4128345 R 160488 CDS NP_745769.1 26990344 1046203 4129380..4130321 1 NC_002947.3 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase 4130321 argC 1046203 argC Pseudomonas putida KT2440 N-acetyl-gamma-glutamyl-phosphate reductase NP_745769.1 4129380 D 160488 CDS NP_745770.1 26990345 1046485 4130299..4131084 1 NC_002947.3 identified by match to PFAM protein family HMM PF00583; acetyltransferase 4131084 1046485 PP_3634 Pseudomonas putida KT2440 acetyltransferase NP_745770.1 4130299 D 160488 CDS NP_745771.1 26990346 1046495 complement(4131196..4131951) 1 NC_002947.3 similar to GP:9948362, and GP:5823450; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein 4131951 1046495 PP_3635 Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_745771.1 4131196 R 160488 CDS NP_745772.1 26990347 1046492 complement(4131951..4133156) 1 NC_002947.3 similar to GP:5823449; identified by sequence similarity; sulfonate ABC transporter substrate-binding protein 4133156 1046492 PP_3636 Pseudomonas putida KT2440 sulfonate ABC transporter substrate-binding protein NP_745772.1 4131951 R 160488 CDS NP_745773.1 26990348 1045325 complement(4133143..4133964) 1 NC_002947.3 similar to GP:5823448; identified by sequence similarity; sulfonate ABC transporter ATP-binding protein 4133964 1045325 PP_3637 Pseudomonas putida KT2440 sulfonate ABC transporter ATP-binding protein NP_745773.1 4133143 R 160488 CDS NP_745774.1 26990349 1046397 complement(4133961..4135025) 1 NC_002947.3 similar to GP:5823447; identified by sequence similarity; acyl-CoA dehydrogenase 4135025 1046397 PP_3638 Pseudomonas putida KT2440 acyl-CoA dehydrogenase NP_745774.1 4133961 R 160488 CDS NP_745775.1 26990350 1046468 complement(4135125..4135784) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00778; alkylhydroperoxidase 4135784 1046468 PP_3639 Pseudomonas putida KT2440 alkylhydroperoxidase NP_745775.1 4135125 R 160488 CDS NP_745776.1 26990351 1046471 4135788..4136708 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 4136708 1046471 PP_3640 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_745776.1 4135788 D 160488 CDS NP_745777.1 26990352 1042539 complement(4136778..4138181) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02133; cytosine/purines uracil thiamine allantoin permease 4138181 1042539 PP_3641 Pseudomonas putida KT2440 cytosine/purines uracil thiamine allantoin permease NP_745777.1 4136778 R 160488 CDS NP_745778.1 26990353 1044208 4138275..4138424 1 NC_002947.3 hypothetical protein 4138424 1044208 PP_3642 Pseudomonas putida KT2440 hypothetical protein NP_745778.1 4138275 D 160488 CDS NP_745779.1 26990354 1046437 4138498..4138983 1 NC_002947.3 identified by match to PFAM protein family HMM PF01613; oxidoreductase 4138983 1046437 PP_3643 Pseudomonas putida KT2440 oxidoreductase NP_745779.1 4138498 D 160488 CDS NP_745780.1 26990355 1046380 4139064..4140104 1 NC_002947.3 similar to SP:P24376, GB:X55648, and PID:43525; identified by sequence similarity; luciferase 4140104 1046380 PP_3644 Pseudomonas putida KT2440 luciferase NP_745780.1 4139064 D 160488 CDS NP_745781.1 26990356 1046466 4140989..4141867 1 NC_002947.3 similar to GP:2935027; identified by sequence similarity; alpha/beta hydrolase 4141867 1046466 PP_3645 Pseudomonas putida KT2440 alpha/beta hydrolase NP_745781.1 4140989 D 160488 CDS NP_745782.1 26990357 1046204 4141864..4143345 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01722; aldehyde dehydrogenase 4143345 1046204 PP_3646 Pseudomonas putida KT2440 aldehyde dehydrogenase NP_745782.1 4141864 D 160488 CDS NP_745783.1 26990358 1046391 4143358..4143843 1 NC_002947.3 similar to GP:3059199; identified by sequence similarity; oxidoreductase 4143843 1046391 PP_3647 Pseudomonas putida KT2440 oxidoreductase NP_745783.1 4143358 D 160488 CDS NP_745784.1 26990359 1046298 4143966..4144355 1 NC_002947.3 identified by match to PFAM protein family HMM PF02627; carboxymuconolactone decarboxylase 4144355 1046298 PP_3648 Pseudomonas putida KT2440 carboxymuconolactone decarboxylase NP_745784.1 4143966 D 160488 CDS NP_745785.1 26990360 1046489 4144444..4145196 1 NC_002947.3 similar to GB:M13923, SP:P06185, GB:X52093, and PID:154256; identified by sequence similarity; GntR family transcriptional regulator 4145196 1046489 PP_3649 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_745785.1 4144444 D 160488 CDS NP_745786.1 26990361 1046227 4145199..4145762 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00586; NUDIX hydrolase 4145762 1046227 PP_3650 Pseudomonas putida KT2440 NUDIX hydrolase NP_745786.1 4145199 D 160488 CDS NP_745787.1 26990362 1046245 4145914..4148097 1 NC_002947.3 identified by match to PFAM protein family HMM PF02518; GAF sensor hybrid histidine kinase 4148097 1046245 PP_3651 Pseudomonas putida KT2440 GAF sensor hybrid histidine kinase NP_745787.1 4145914 D 160488 CDS NP_745788.1 26990363 1046493 complement(4148120..4148752) 1 NC_002947.3 similar to GB:M31308, SP:P15922, and PID:148447; identified by sequence similarity; amino acid transporter LysE 4148752 1046493 PP_3652 Pseudomonas putida KT2440 amino acid transporter LysE NP_745788.1 4148120 R 160488 CDS NP_745789.1 26990364 1046323 complement(4148819..4149433) 1 NC_002947.3 similar to GP:4585594; identified by sequence similarity; amino acid transporter LysE 4149433 1046323 PP_3653 Pseudomonas putida KT2440 amino acid transporter LysE NP_745789.1 4148819 R 160488 CDS NP_745790.1 26990365 1043427 4149545..4149997 1 NC_002947.3 similar to GP:3980226; identified by sequence similarity; AsnC family transcriptional regulator 4149997 1043427 PP_3654 Pseudomonas putida KT2440 AsnC family transcriptional regulator NP_745790.1 4149545 D 160488 CDS NP_745791.1 26990366 1046405 4150394..4151806 1 NC_002947.3 identified by match to PFAM protein family HMM PF04171; cytosine/purines uracil thiamine allantoin permease 4151806 1046405 PP_3655 Pseudomonas putida KT2440 cytosine/purines uracil thiamine allantoin permease NP_745791.1 4150394 D 160488 CDS NP_745792.1 26990367 1042580 complement(4151957..4153219) 1 NC_002947.3 Appears to be in an operon of genes involved in the import and degradation of an aromatic compound.; identified by match to PFAM protein family HMM PF03573; aromatic compound-specific porin 4153219 1042580 PP_3656 Pseudomonas putida KT2440 aromatic compound-specific porin NP_745792.1 4151957 R 160488 CDS NP_745793.1 26990368 1046392 complement(4153380..4154054) 1 NC_002947.3 similar to GP:9885815; identified by sequence similarity; nitrobenzoate reductase 4154054 1046392 PP_3657 Pseudomonas putida KT2440 nitrobenzoate reductase NP_745793.1 4153380 R 160488 CDS NP_745794.1 26990369 1046282 complement(4154137..4155489) 1 NC_002947.3 similar to GP:7542440; identified by sequence similarity; aromatic compound MFS transporter 4155489 1046282 PP_3658 Pseudomonas putida KT2440 aromatic compound MFS transporter NP_745794.1 4154137 R 160488 CDS NP_745795.1 26990370 1046169 complement(4155761..4157014) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 4157014 1046169 PP_3659 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_745795.1 4155761 R 160488 CDS NP_745796.1 26990371 1046196 complement(4156987..4157874) 1 NC_002947.3 similar to GB:X57351, GB:X02490, SP:Q01628, SP:Q01629, and PID:23396; identified by sequence similarity; LysR family transcriptional regulator 4157874 1046196 PP_3660 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745796.1 4156987 R 160488 CDS NP_745797.1 26990372 1046202 4157987..4159048 1 NC_002947.3 identified by match to PFAM protein family HMM PF03601; hypothetical protein 4159048 1046202 PP_3661 Pseudomonas putida KT2440 hypothetical protein NP_745797.1 4157987 D 160488 CDS NP_745798.1 26990373 1046470 4159257..4160630 1 NC_002947.3 similar to GP:9950318; identified by sequence similarity; decarboxylase 4160630 1046470 PP_3662 Pseudomonas putida KT2440 decarboxylase NP_745798.1 4159257 D 160488 CDS NP_745799.1 26990374 1044765 complement(4160751..4162052) 1 NC_002947.3 similar to GB:X67697, SP:Q08648, and PID:395921; identified by sequence similarity; diguanylate cyclase 4162052 1044765 PP_3663 Pseudomonas putida KT2440 diguanylate cyclase NP_745799.1 4160751 R 160488 CDS NP_745800.1 26990375 1046197 complement(4162129..4163457) 1 NC_002947.3 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 4163457 pssA 1046197 pssA Pseudomonas putida KT2440 phosphatidylserine synthase NP_745800.1 4162129 R 160488 CDS NP_745801.1 26990376 1046199 4163441..4164646 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 4164646 1046199 PP_3665 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_745801.1 4163441 D 160488 CDS NP_745802.1 26990377 1046296 complement(4164763..4166097) 1 NC_002947.3 similar to GP:9716209; identified by sequence similarity; major facilitator superfamily transporter 4166097 1046296 PP_3666 Pseudomonas putida KT2440 major facilitator superfamily transporter NP_745802.1 4164763 R 160488 CDS NP_745803.1 26990378 1045383 complement(4166260..4167471) 1 NC_002947.3 similar to GB:L08895, SP:Q06413, PID:292290, GB:L08895, SP:Q06413, and PID:292290; identified by sequence similarity; creatinase 4167471 1045383 PP_3667 Pseudomonas putida KT2440 creatinase NP_745803.1 4166260 R 160488 CDS NP_745804.1 26990379 1045143 complement(4167633..4169888) 1 NC_002947.3 similar to GP:12620402; identified by sequence similarity; catalase/peroxidase HPI 4169888 1045143 PP_3668 Pseudomonas putida KT2440 catalase/peroxidase HPI NP_745804.1 4167633 R 160488 CDS NP_745805.1 26990380 1046198 4170275..4171180 1 NC_002947.3 similar to GP:3646369; identified by sequence similarity; LysR family transcriptional regulator 4171180 1046198 PP_3669 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745805.1 4170275 D 160488 CDS NP_745806.1 26990381 1046396 complement(4171240..4172118) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00892; hypothetical protein 4172118 1046396 PP_3670 Pseudomonas putida KT2440 hypothetical protein NP_745806.1 4171240 R 160488 CDS NP_745807.1 26990382 1046399 4172363..4173187 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01293; aldo/keto reductase 4173187 1046399 PP_3671 Pseudomonas putida KT2440 aldo/keto reductase NP_745807.1 4172363 D 160488 CDS NP_745808.1 26990383 1046207 complement(4173202..4173774) 1 NC_002947.3 similar to GP:14022500, SP:P24075, GB:X59956, and PID:48924; identified by sequence similarity; hypothetical protein 4173774 1046207 PP_3672 Pseudomonas putida KT2440 hypothetical protein NP_745808.1 4173202 R 160488 CDS NP_745809.1 26990384 1046328 4175034..4175186 1 NC_002947.3 hypothetical protein 4175186 1046328 PP_3675 Pseudomonas putida KT2440 hypothetical protein NP_745809.1 4175034 D 160488 CDS NP_745810.1 26990385 1046255 4175316..4177427 1 NC_002947.3 hypothetical protein 4177427 1046255 PP_3676 Pseudomonas putida KT2440 hypothetical protein NP_745810.1 4175316 D 160488 CDS NP_745811.1 26990386 1046379 4177424..4179610 1 NC_002947.3 hypothetical protein 4179610 1046379 PP_3677 Pseudomonas putida KT2440 hypothetical protein NP_745811.1 4177424 D 160488 CDS NP_745812.1 26990387 1045397 4180132..4181595 1 NC_002947.3 identified by match to PFAM protein family HMM PF00589; hypothetical protein 4181595 1045397 PP_3678 Pseudomonas putida KT2440 hypothetical protein NP_745812.1 4180132 D 160488 CDS NP_745813.1 26990388 1046041 complement(4181658..4181981) 1 NC_002947.3 hypothetical protein 4181981 1046041 PP_3679 Pseudomonas putida KT2440 hypothetical protein NP_745813.1 4181658 R 160488 CDS NP_745814.1 26990389 1046510 4182219..4184222 1 NC_002947.3 identified by match to PFAM protein family HMM PF02463; hypothetical protein 4184222 1046510 PP_3680 Pseudomonas putida KT2440 hypothetical protein NP_745814.1 4182219 D 160488 CDS NP_745815.1 26990390 1046300 4184219..4185877 1 NC_002947.3 identified by match to PFAM protein family HMM PF00580; helicase 4185877 1046300 PP_3681 Pseudomonas putida KT2440 helicase NP_745815.1 4184219 D 160488 CDS NP_745816.1 26990391 1046212 4185928..4186080 1 NC_002947.3 hypothetical protein 4186080 1046212 PP_3682 Pseudomonas putida KT2440 hypothetical protein NP_745816.1 4185928 D 160488 CDS NP_745817.1 26990392 1046213 4186650..4187891 1 NC_002947.3 hypothetical protein 4187891 1046213 PP_3683 Pseudomonas putida KT2440 hypothetical protein NP_745817.1 4186650 D 160488 CDS NP_745818.1 26990393 1046317 4188101..4188400 1 NC_002947.3 hypothetical protein 4188400 1046317 PP_3684 Pseudomonas putida KT2440 hypothetical protein NP_745818.1 4188101 D 160488 CDS NP_745819.1 26990394 1046297 4189760..4189942 1 NC_002947.3 hypothetical protein 4189942 1046297 PP_3685 Pseudomonas putida KT2440 hypothetical protein NP_745819.1 4189760 D 160488 CDS NP_745820.1 26990395 1045376 complement(4191774..4191944) 1 NC_002947.3 hypothetical protein 4191944 1045376 PP_3686 Pseudomonas putida KT2440 hypothetical protein NP_745820.1 4191774 R 160488 CDS NP_745821.1 26990396 1046325 complement(4194971..4195669) 1 NC_002947.3 hypothetical protein 4195669 1046325 PP_3688 Pseudomonas putida KT2440 hypothetical protein NP_745821.1 4194971 R 160488 CDS NP_745822.1 26990397 1046293 4198162..4199169 1 NC_002947.3 similar to SP:Q05528, GB:X62073, PID:48986, SP:Q05528, GB:X62073, and PID:48986; identified by sequence similarity; serine/threonine protein phosphatase 4199169 1046293 PP_3689 Pseudomonas putida KT2440 serine/threonine protein phosphatase NP_745822.1 4198162 D 160488 CDS NP_745823.1 26990398 1046301 complement(4199711..4201033) 1 NC_002947.3 hypothetical protein 4201033 1046301 PP_3690 Pseudomonas putida KT2440 hypothetical protein NP_745823.1 4199711 R 160488 CDS NP_745824.1 26990399 1046263 complement(4201148..4207771) 1 NC_002947.3 similar to SP:P17224, GB:X52284, PID:42514, SP:P22879, SP:P12834, PID:154521, and PID:48022; identified by sequence similarity; DNA helicase-like protein 4207771 1046263 PP_3691 Pseudomonas putida KT2440 DNA helicase-like protein NP_745824.1 4201148 R 160488 CDS NP_745825.1 26990400 1046477 4208044..4210719 1 NC_002947.3 hypothetical protein 4210719 1046477 PP_3692 Pseudomonas putida KT2440 hypothetical protein NP_745825.1 4208044 D 160488 CDS NP_745826.1 26990401 1046372 complement(4211122..4211487) 1 NC_002947.3 transcriptional regulator MvaT, P16 subunit 4211487 1046372 PP_3693 Pseudomonas putida KT2440 transcriptional regulator MvaT, P16 subunit NP_745826.1 4211122 R 160488 CDS NP_745827.1 26990402 1046395 complement(4211652..4212611) 1 NC_002947.3 hypothetical protein 4212611 1046395 PP_3694 Pseudomonas putida KT2440 hypothetical protein NP_745827.1 4211652 R 160488 CDS NP_745828.1 26990403 1046320 complement(4212569..4213720) 1 NC_002947.3 hypothetical protein 4213720 1046320 PP_3695 Pseudomonas putida KT2440 hypothetical protein NP_745828.1 4212569 R 160488 CDS NP_745829.1 26990404 1045116 complement(4213727..4214947) 1 NC_002947.3 hypothetical protein 4214947 1045116 PP_3696 Pseudomonas putida KT2440 hypothetical protein NP_745829.1 4213727 R 160488 CDS NP_745830.1 26990405 1046294 complement(4214954..4217038) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04097; hypothetical protein 4217038 1046294 PP_3697 Pseudomonas putida KT2440 hypothetical protein NP_745830.1 4214954 R 160488 CDS NP_745831.1 26990406 1046511 complement(4217793..4219292) 1 NC_002947.3 hypothetical protein 4219292 1046511 PP_3698 Pseudomonas putida KT2440 hypothetical protein NP_745831.1 4217793 R 160488 CDS NP_745832.1 26990407 1046329 4219431..4221137 1 NC_002947.3 identified by match to PFAM protein family HMM PF01118; hypothetical protein 4221137 1046329 PP_3699 Pseudomonas putida KT2440 hypothetical protein NP_745832.1 4219431 D 160488 CDS NP_745833.1 26990408 1042624 complement(4221399..4222628) 1 NC_002947.3 hypothetical protein 4222628 1042624 PP_3700 Pseudomonas putida KT2440 hypothetical protein NP_745833.1 4221399 R 160488 CDS NP_745834.1 26990409 1046291 complement(4222647..4222850) 1 NC_002947.3 hypothetical protein 4222850 1046291 PP_3701 Pseudomonas putida KT2440 hypothetical protein NP_745834.1 4222647 R 160488 CDS NP_745835.1 26990410 1042826 complement(4222865..4223032) 1 NC_002947.3 hypothetical protein 4223032 1042826 PP_3702 Pseudomonas putida KT2440 hypothetical protein NP_745835.1 4222865 R 160488 CDS NP_745836.1 26990411 1046060 complement(4223090..4223884) 1 NC_002947.3 hypothetical protein 4223884 1046060 PP_3703 Pseudomonas putida KT2440 hypothetical protein NP_745836.1 4223090 R 160488 CDS NP_745837.1 26990412 1046290 complement(4224705..4224920) 1 NC_002947.3 hypothetical protein 4224920 1046290 PP_3704 Pseudomonas putida KT2440 hypothetical protein NP_745837.1 4224705 R 160488 CDS NP_745838.1 26990413 1046322 complement(4224921..4226093) 1 NC_002947.3 hypothetical protein 4226093 1046322 PP_3705 Pseudomonas putida KT2440 hypothetical protein NP_745838.1 4224921 R 160488 CDS NP_745839.1 26990414 1046446 complement(4226880..4227839) 1 NC_002947.3 similar to GP:7635977, and GP:6752313; identified by sequence similarity; hypothetical protein 4227839 1046446 PP_3706 Pseudomonas putida KT2440 hypothetical protein NP_745839.1 4226880 R 160488 CDS NP_745840.1 26990415 1046358 complement(4228788..4230203) 1 NC_002947.3 hypothetical protein 4230203 1046358 PP_3707 Pseudomonas putida KT2440 hypothetical protein NP_745840.1 4228788 R 160488 CDS NP_745841.1 26990416 1046179 complement(4230224..4231261) 1 NC_002947.3 hypothetical protein 4231261 1046179 PP_3708 Pseudomonas putida KT2440 hypothetical protein NP_745841.1 4230224 R 160488 CDS NP_745842.1 26990417 1046210 complement(4231377..4231736) 1 NC_002947.3 hypothetical protein 4231736 1046210 PP_3709 Pseudomonas putida KT2440 hypothetical protein NP_745842.1 4231377 R 160488 CDS NP_745843.1 26990418 1045395 complement(4232328..4232789) 1 NC_002947.3 hypothetical protein 4232789 1045395 PP_3710 Pseudomonas putida KT2440 hypothetical protein NP_745843.1 4232328 R 160488 CDS NP_745844.1 26990419 1046331 complement(4233549..4235060) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00990; sensory box protein 4235060 1046331 PP_3711 Pseudomonas putida KT2440 sensory box protein NP_745844.1 4233549 R 160488 CDS NP_745845.1 26990420 1041706 complement(4235222..4235716) 1 NC_002947.3 similar to GP:10173711, and GP:10173711; identified by sequence similarity; hypothetical protein 4235716 1041706 PP_3712 Pseudomonas putida KT2440 hypothetical protein NP_745845.1 4235222 R 160488 CDS NP_745846.1 26990421 1045930 complement(4235833..4236768) 1 NC_002947.3 similar to GB:D16827, SP:P35346, PID:431095, PID:487684, GB:D16827, SP:P35346, PID:431095, and PID:487684; identified by sequence similarity; catechol 1,2-dioxygenase 4236768 catA 1045930 catA Pseudomonas putida KT2440 catechol 1,2-dioxygenase NP_745846.1 4235833 R 160488 CDS NP_745847.1 26990422 1045925 complement(4236812..4237102) 1 NC_002947.3 similar to GP:2647940, and GP:2647940; identified by sequence similarity; muconolactone isomerase 4237102 catC 1045925 catC Pseudomonas putida KT2440 muconolactone isomerase NP_745847.1 4236812 R 160488 CDS NP_745848.1 26990423 1046512 complement(4237124..4238245) 1 NC_002947.3 similar to GP:1633162, and GP:1633162; identified by sequence similarity; muconate and chloromuconate cycloisomerase 4238245 catB 1046512 catB Pseudomonas putida KT2440 muconate and chloromuconate cycloisomerase NP_745848.1 4237124 R 160488 CDS NP_745849.1 26990424 1046465 4238381..4239253 1 NC_002947.3 similar to GB:X06233, GB:M21064, GB:A12031, GB:A12029, SP:P06702, PID:34771, PID:386958, PID:490104, PID:490108, PID:516621, GB:X06233, GB:M21064, GB:A12031, GB:A12029, SP:P06702, PID:34771, PID:386958, PID:490104, PID:490108, and PID:516621; identified by sequence similarity; LysR family transcriptional regulator 4239253 catR 1046465 catR Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745849.1 4238381 D 160488 CDS NP_745850.1 26990425 1046299 complement(4239386..4240285) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00196; LuxR family transcriptional regulator 4240285 1046299 PP_3717 Pseudomonas putida KT2440 LuxR family transcriptional regulator NP_745850.1 4239386 R 160488 CDS NP_745851.1 26990426 1044768 complement(4240282..4241694) 1 NC_002947.3 similar to SP:P32724, GB:X58406, PID:581361, PID:2094830, and GB:AL123456; identified by sequence similarity; hypothetical protein 4241694 1044768 PP_3718 Pseudomonas putida KT2440 hypothetical protein NP_745851.1 4240282 R 160488 CDS NP_745852.1 26990427 1045388 complement(4241729..4242832) 1 NC_002947.3 similar to GP:9947357; identified by sequence similarity; polyamine ABC transporter substrate-binding protein 4242832 1045388 PP_3719 Pseudomonas putida KT2440 polyamine ABC transporter substrate-binding protein NP_745852.1 4241729 R 160488 CDS NP_745853.1 26990428 1046486 complement(4243026..4243733) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02525; ribosyldihydronicotinamide dehydrogenase 4243733 1046486 PP_3720 Pseudomonas putida KT2440 ribosyldihydronicotinamide dehydrogenase NP_745853.1 4243026 R 160488 CDS NP_745854.1 26990429 1046484 complement(4243826..4245016) 1 NC_002947.3 similar to GB:M31520, GB:U12202, SP:P16632, PID:337506, PID:517221, and PID:517222; identified by sequence similarity; aspartate aminotransferase 4245016 aspC 1046484 aspC Pseudomonas putida KT2440 aspartate aminotransferase NP_745854.1 4243826 R 160488 CDS NP_745855.1 26990430 1043924 complement(4245041..4246270) 1 NC_002947.3 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 4246270 alr 1043924 alr Pseudomonas putida KT2440 alanine racemase NP_745855.1 4245041 R 160488 CDS NP_745856.1 26990431 1046476 complement(4247906..4250023) 1 NC_002947.3 similar to GP:5514636; identified by sequence similarity; acyl-CoA synthetase 4250023 1046476 PP_3724 Pseudomonas putida KT2440 acyl-CoA synthetase NP_745856.1 4247906 R 160488 CDS NP_745857.1 26990432 1045373 complement(4250041..4251201) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02770; acyl-CoA dehydrogenase 4251201 1045373 PP_3725 Pseudomonas putida KT2440 acyl-CoA dehydrogenase NP_745857.1 4250041 R 160488 CDS NP_745858.1 26990433 1046767 complement(4251235..4252029) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00378; enoyl-CoA hydratase 4252029 1046767 PP_3726 Pseudomonas putida KT2440 enoyl-CoA hydratase NP_745858.1 4251235 R 160488 CDS NP_745859.1 26990434 1046483 complement(4252269..4253675) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00913; amino acid transporter 4253675 1046483 PP_3727 Pseudomonas putida KT2440 amino acid transporter NP_745859.1 4252269 R 160488 CDS NP_745860.1 26990435 1046490 complement(4253872..4256124) 1 NC_002947.3 similar to GP:9951266; identified by sequence similarity; multi-sensor hybrid histidine kinase 4256124 1046490 PP_3728 Pseudomonas putida KT2440 multi-sensor hybrid histidine kinase NP_745860.1 4253872 R 160488 CDS NP_745861.1 26990436 1045577 complement(4256121..4256903) 1 NC_002947.3 similar to GP:9950221; identified by sequence similarity; amino acid ABC transporter substrate-binding protein 4256903 1045577 PP_3729 Pseudomonas putida KT2440 amino acid ABC transporter substrate-binding protein NP_745861.1 4256121 R 160488 CDS NP_745862.1 26990437 1046251 complement(4256900..4257616) 1 NC_002947.3 similar to GP:9951267; identified by sequence similarity; transcriptional regulator 4257616 1046251 PP_3730 Pseudomonas putida KT2440 transcriptional regulator NP_745862.1 4256900 R 160488 CDS NP_745863.1 26990438 1046327 complement(4257690..4258334) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 4258334 1046327 PP_3731 Pseudomonas putida KT2440 TetR family transcriptional regulator NP_745863.1 4257690 R 160488 CDS NP_745864.1 26990439 1046475 4258451..4259197 1 NC_002947.3 identified by match to PFAM protein family HMM PF00378; enoyl-CoA hydratase 4259197 1046475 PP_3732 Pseudomonas putida KT2440 enoyl-CoA hydratase NP_745864.1 4258451 D 160488 CDS NP_745865.1 26990440 1046504 complement(4259251..4260309) 1 NC_002947.3 similar to GB:L24392, PID:402917, and SP:P52670; identified by sequence similarity; ABC transporter 4260309 1046504 PP_3733 Pseudomonas putida KT2440 ABC transporter NP_745865.1 4259251 R 160488 CDS NP_745866.1 26990441 1045584 complement(4260299..4262758) 1 NC_002947.3 similar to GP:5508818, and GP:5508818; identified by sequence similarity; hypothetical protein 4262758 1045584 PP_3734 Pseudomonas putida KT2440 hypothetical protein NP_745866.1 4260299 R 160488 CDS NP_745867.1 26990442 1046424 complement(4262758..4263423) 1 NC_002947.3 similar to GB:L24392, PID:402917, and SP:P52670; identified by sequence similarity; ABC transporter ATP-binding protein 4263423 1046424 PP_3735 Pseudomonas putida KT2440 ABC transporter ATP-binding protein NP_745867.1 4262758 R 160488 CDS NP_745868.1 26990443 1046507 4263705..4264772 1 NC_002947.3 similar to GP:2765429, and GB:X55141; identified by sequence similarity; Rieske (2Fe-2S) domain-containing protein 4264772 vanA 1046507 vanA Pseudomonas putida KT2440 Rieske (2Fe-2S) domain-containing protein NP_745868.1 4263705 D 160488 CDS NP_745869.1 26990444 1046180 4264785..4265735 1 NC_002947.3 similar to SP:O54037, and SP:O54037; identified by sequence similarity; ferredoxin 4265735 vanB 1046180 vanB Pseudomonas putida KT2440 ferredoxin NP_745869.1 4264785 D 160488 CDS NP_745870.1 26990445 1046176 complement(4265742..4266455) 1 NC_002947.3 similar to GP:6646872, and GP:6646872; identified by sequence similarity; GntR family transcriptional regulator 4266455 1046176 PP_3738 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_745870.1 4265742 R 160488 CDS NP_745871.1 26990446 1045424 complement(4267958..4269298) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00895; major facilitator family transporter 4269298 1045424 PP_3740 Pseudomonas putida KT2440 major facilitator family transporter NP_745871.1 4267958 R 160488 CDS NP_745872.1 26990447 1046288 4269859..4271754 1 NC_002947.3 identified by match to PFAM protein family HMM PF00905; penicillin-binding protein 2 4271754 mrdA-1 1046288 mrdA-1 Pseudomonas putida KT2440 penicillin-binding protein 2 NP_745872.1 4269859 D 160488 CDS NP_745873.1 26990448 1046502 complement(4271797..4272423) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02798; glutathione S-transferase 4272423 1046502 PP_3742 Pseudomonas putida KT2440 glutathione S-transferase NP_745873.1 4271797 R 160488 CDS NP_745874.1 26990449 1046498 4272705..4273022 1 NC_002947.3 similar to GP:9951794; identified by sequence similarity; hypothetical protein 4273022 1046498 PP_3743 Pseudomonas putida KT2440 hypothetical protein NP_745874.1 4272705 D 160488 CDS NP_745875.1 26990450 1046289 complement(4273083..4273874) 1 NC_002947.3 similar to GB:X53463, SP:P18283, and PID:579930; identified by sequence similarity; DNA-binding transcriptional regulator GlcC 4273874 glcC 1046289 glcC Pseudomonas putida KT2440 DNA-binding transcriptional regulator GlcC NP_745875.1 4273083 R 160488 CDS NP_745876.1 26990451 1046295 4274042..4275541 1 NC_002947.3 similar to SP:P32718, PID:396419, GB:U00096, and PID:1790522; identified by sequence similarity; glycolate oxidase subunit GlcD 4275541 glcD 1046295 glcD Pseudomonas putida KT2440 glycolate oxidase subunit GlcD NP_745876.1 4274042 D 160488 CDS NP_745877.1 26990452 1041874 4275541..4276593 1 NC_002947.3 similar to SP:P52073, GB:X53463, SP:P18283, and PID:579930; identified by sequence similarity; glycolate oxidase FAD binding subunit 4276593 glcE 1041874 glcE Pseudomonas putida KT2440 glycolate oxidase FAD binding subunit NP_745877.1 4275541 D 160488 CDS NP_745878.1 26990453 1046285 4276603..4277838 1 NC_002947.3 similar to SP:P52074, GB:X53463, SP:P18283, and PID:579930; identified by sequence similarity; glycolate oxidase iron-sulfur subunit 4277838 glcF 1046285 glcF Pseudomonas putida KT2440 glycolate oxidase iron-sulfur subunit NP_745878.1 4276603 D 160488 CDS NP_745879.1 26990454 1045916 4277831..4278229 1 NC_002947.3 similar to GB:X75346, GB:U12779, SP:P49137, and PID:530090; identified by sequence similarity; hypothetical protein 4278229 glcG 1045916 glcG Pseudomonas putida KT2440 hypothetical protein NP_745879.1 4277831 D 160488 CDS NP_745880.1 26990455 1046308 4278192..4278707 1 NC_002947.3 hypothetical protein 4278707 1046308 PP_3749 Pseudomonas putida KT2440 hypothetical protein NP_745880.1 4278192 D 160488 CDS NP_745881.1 26990456 1046287 4278799..4280232 1 NC_002947.3 identified by match to PFAM protein family HMM PF00392; GntR family transcriptional regulator 4280232 1046287 PP_3750 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_745881.1 4278799 D 160488 CDS NP_745882.1 26990457 1043675 complement(4280225..4281421) 1 NC_002947.3 similar to GB:J03459, GB:J02959, SP:P09960, PID:307130, PID:307131, and PID:976396; identified by sequence similarity; major facilitator superfamily transporter 4281421 1043675 PP_3751 Pseudomonas putida KT2440 major facilitator superfamily transporter NP_745882.1 4280225 R 160488 CDS NP_745883.1 26990458 1046410 complement(4282139..4283227) 1 NC_002947.3 similar to GP:9948615; identified by sequence similarity; AraC family transcriptional regulator 4283227 1046410 PP_3753 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_745883.1 4282139 R 160488 CDS NP_745884.1 26990459 1046330 4283396..4284580 1 NC_002947.3 catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase 4284580 1046330 PP_3754 Pseudomonas putida KT2440 beta-ketothiolase NP_745884.1 4283396 D 160488 CDS NP_745885.1 26990460 1046246 4284594..4285442 1 NC_002947.3 similar to GP:10176425; identified by sequence similarity; 3-hydroxybutyryl-CoA dehydrogenase 4285442 paaH 1046246 paaH Pseudomonas putida KT2440 3-hydroxybutyryl-CoA dehydrogenase NP_745885.1 4284594 D 160488 CDS NP_745886.1 26990461 1046378 4285455..4286036 1 NC_002947.3 identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 4286036 1046378 PP_3756 Pseudomonas putida KT2440 TetR family transcriptional regulator NP_745886.1 4285455 D 160488 CDS NP_745887.1 26990462 1046423 complement(4286085..4286462) 1 NC_002947.3 similar to GP:3758881, and GP:3758881; identified by sequence similarity; response regulator receiver protein 4286462 1046423 PP_3757 Pseudomonas putida KT2440 response regulator receiver protein NP_745887.1 4286085 R 160488 CDS NP_745888.1 26990463 1046304 complement(4286507..4287733) 1 NC_002947.3 similar to GP:5566398; identified by sequence similarity; response regulator receiver sensor signal transduction histidine kinase 4287733 1046304 PP_3758 Pseudomonas putida KT2440 response regulator receiver sensor signal transduction histidine kinase NP_745888.1 4286507 R 160488 CDS NP_745889.1 26990464 1046394 complement(4287727..4288302) 1 NC_002947.3 similar to GB:K02567, GB:M13792, GB:K00509, GB:X02199, GB:S57810, GB:X02189, GB:X02190, GB:X02191, GB:X02192, GB:X02193, GB:X02194, GB:X02195, GB:X02196, GB:X02197, GB:X02198, SP:P00813, PID:1197210, GB:K02567, GB:M13792, GB:K00509, GB:X02199, GB:S57810, GB:X02189, GB:X02190, GB:X02191, GB:X02192, GB:X02193, GB:X02194, GB:X02195, GB:X02196, GB:X02197, GB:X02198, SP:P00813, and PID:1197210; identified by sequence similarity; chemotaxis protein CheB 4288302 1046394 PP_3759 Pseudomonas putida KT2440 chemotaxis protein CheB NP_745889.1 4287727 R 160488 CDS NP_745890.1 26990465 1046426 complement(4288299..4289120) 1 NC_002947.3 similar to GB:J03459, GB:J02959, SP:P09960, PID:307130, PID:307131, PID:976396, GB:J03459, GB:J02959, SP:P09960, PID:307130, PID:307131, and PID:976396; identified by sequence similarity; chemotaxis protein CheR 4289120 1046426 PP_3760 Pseudomonas putida KT2440 chemotaxis protein CheR NP_745890.1 4288299 R 160488 CDS NP_745891.1 26990466 1046400 complement(4289117..4292584) 1 NC_002947.3 similar to GP:8246822; identified by sequence similarity; multi-sensor hybrid histidine kinase 4292584 1046400 PP_3761 Pseudomonas putida KT2440 multi-sensor hybrid histidine kinase NP_745891.1 4289117 R 160488 CDS NP_745892.1 26990467 1046491 4292832..4293182 1 NC_002947.3 similar to GP:7019233; identified by sequence similarity; response regulator receiver protein 4293182 1046491 PP_3762 Pseudomonas putida KT2440 response regulator receiver protein NP_745892.1 4292832 D 160488 CDS NP_745893.1 26990468 1046403 complement(4293252..4294001) 1 NC_002947.3 catalyzes the formation of precorrin 6x from precorrin 5; precorrin 6A synthase 4294001 1046403 PP_3763 Pseudomonas putida KT2440 precorrin 6A synthase NP_745893.1 4293252 R 160488 CDS NP_745894.1 26990469 1046441 complement(4294069..4295370) 1 NC_002947.3 similar to GP:3253207; identified by sequence similarity; porin 4295370 1046441 PP_3764 Pseudomonas putida KT2440 porin NP_745894.1 4294069 R 160488 CDS NP_745895.1 26990470 1046376 4295720..4296079 1 NC_002947.3 transcriptional regulator MvaT, P16 subunit 4296079 1046376 PP_3765 Pseudomonas putida KT2440 transcriptional regulator MvaT, P16 subunit NP_745895.1 4295720 D 160488 CDS NP_745896.1 26990471 1046419 4296304..4296831 1 NC_002947.3 similar to GB:Z14955, GB:Z14954, GB:Z29574, GB:Z29575, SP:Q02223, PID:1930146, PID:29408, PID:33807, PID:471245, and PID:499189; identified by sequence similarity; lactoylglutathione lyase 4296831 gloA 1046419 gloA Pseudomonas putida KT2440 lactoylglutathione lyase NP_745896.1 4296304 D 160488 CDS NP_745897.1 26990472 1046494 4296929..4297171 1 NC_002947.3 similar to GP:9949033, and GP:9949033; identified by sequence similarity; hypothetical protein 4297171 1046494 PP_3767 Pseudomonas putida KT2440 hypothetical protein NP_745897.1 4296929 D 160488 CDS NP_745898.2 161378126 1046382 complement(4297230..4298051) 1 NC_002947.3 catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 4298051 aroE 1046382 aroE Pseudomonas putida KT2440 shikimate 5-dehydrogenase NP_745898.2 4297230 R 160488 CDS NP_745899.1 26990474 1046367 4298213..4298566 1 NC_002947.3 hypothetical protein 4298566 1046367 PP_3769 Pseudomonas putida KT2440 hypothetical protein NP_745899.1 4298213 D 160488 CDS NP_745900.1 26990475 1046432 4298661..4298843 1 NC_002947.3 hypothetical protein 4298843 1046432 PP_3770 Pseudomonas putida KT2440 hypothetical protein NP_745900.1 4298661 D 160488 CDS NP_745901.1 26990476 1046467 complement(4298934..4299320) 1 NC_002947.3 hypothetical protein 4299320 1046467 PP_3771 Pseudomonas putida KT2440 hypothetical protein NP_745901.1 4298934 R 160488 CDS NP_745902.1 26990477 1046362 4299368..4300237 1 NC_002947.3 identified by match to PFAM protein family HMM PF00717; phage repressor 4300237 1046362 PP_3772 Pseudomonas putida KT2440 phage repressor NP_745902.1 4299368 D 160488 CDS NP_745903.1 26990478 1046335 complement(4300276..4300641) 1 NC_002947.3 hypothetical protein 4300641 1046335 PP_3773 Pseudomonas putida KT2440 hypothetical protein NP_745903.1 4300276 R 160488 CDS NP_745904.1 26990479 1046387 4300834..4301508 1 NC_002947.3 alginate lyase 2 4301508 1046387 PP_3774 Pseudomonas putida KT2440 alginate lyase 2 NP_745904.1 4300834 D 160488 CDS NP_745905.1 26990480 1045586 complement(4303152..4304300) 1 NC_002947.3 similar to GP:217024, and SP:P40854; identified by sequence similarity; sarcosine oxidase 4304300 1045586 PP_3775 Pseudomonas putida KT2440 sarcosine oxidase NP_745905.1 4303152 R 160488 CDS NP_745906.1 26990481 1045594 complement(4304293..4305207) 1 NC_002947.3 similar to GP:6960247, and SP:P27844; identified by sequence similarity; rarD protein 4305207 rarD-3 1045594 rarD-3 Pseudomonas putida KT2440 rarD protein NP_745906.1 4304293 R 160488 CDS NP_745907.1 26990482 1046355 complement(4305213..4306052) 1 NC_002947.3 similar to GP:6468417; identified by sequence similarity; hypothetical protein 4306052 1046355 PP_3777 Pseudomonas putida KT2440 hypothetical protein NP_745907.1 4305213 R 160488 CDS NP_745908.1 26990483 1046229 complement(4306070..4306864) 1 NC_002947.3 similar to SP:P22008; identified by sequence similarity; pyrroline-5-carboxylate reductase 4306864 proC-1 1046229 proC-1 Pseudomonas putida KT2440 pyrroline-5-carboxylate reductase NP_745908.1 4306070 R 160488 CDS NP_745909.1 26990484 1045572 complement(4307066..4307998) 1 NC_002947.3 similar to GP:882732; identified by sequence similarity; LysR family transcriptional regulator 4307998 1045572 PP_3779 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745909.1 4307066 R 160488 CDS NP_745910.1 26990485 1046388 complement(4308090..4308245) 1 NC_002947.3 hypothetical protein 4308245 1046388 PP_3780 Pseudomonas putida KT2440 hypothetical protein NP_745910.1 4308090 R 160488 CDS NP_745911.1 26990486 1046188 4308593..4310008 1 NC_002947.3 similar to GB:X04106, SP:P04632, PID:179909, PID:1905903, and PID:35328; identified by sequence similarity; oxygen-independent coproporphyrinogen III oxidase 4310008 1046188 PP_3781 Pseudomonas putida KT2440 oxygen-independent coproporphyrinogen III oxidase NP_745911.1 4308593 D 160488 CDS NP_745912.1 26990487 1044150 4310035..4310274 1 NC_002947.3 identified by match to PFAM protein family HMM PF00550; hypothetical protein 4310274 1044150 PP_3782 Pseudomonas putida KT2440 hypothetical protein NP_745912.1 4310035 D 160488 CDS NP_745913.1 26990488 1045892 4310287..4311222 1 NC_002947.3 similar to GP:5748808, GB:U09069, PID:483880, PID:563395, PID:563401, PID:563407, PID:563409, PID:563420, PID:563432, PID:563436, PID:563440, PID:563442, PID:609461, and PID:836630; identified by sequence similarity; hypothetical protein 4311222 1045892 PP_3783 Pseudomonas putida KT2440 hypothetical protein NP_745913.1 4310287 D 160488 CDS NP_745914.1 26990489 1046194 4311279..4312430 1 NC_002947.3 similar to GP:2624947; identified by sequence similarity; hypothetical protein 4312430 1046194 PP_3784 Pseudomonas putida KT2440 hypothetical protein NP_745914.1 4311279 D 160488 CDS NP_745915.1 26990490 1045595 4312436..4313776 1 NC_002947.3 hypothetical protein 4313776 1045595 PP_3785 Pseudomonas putida KT2440 hypothetical protein NP_745915.1 4312436 D 160488 CDS NP_745916.1 26990491 1041995 4313797..4315005 1 NC_002947.3 similar to GB:X79782, SP:P01701, SP:P06316, SP:P06888, PID:473562, PID:497342, PID:497381, PID:506429, PID:507343, PID:517347, PID:553499, PID:575231, PID:587368, PID:619436, PID:619437, and PID:758087; identified by sequence similarity; aminotransferase 4315005 1041995 PP_3786 Pseudomonas putida KT2440 aminotransferase NP_745916.1 4313797 D 160488 CDS NP_745917.1 26990492 1046292 4315002..4315919 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00747; hypothetical protein 4315919 1046292 PP_3787 Pseudomonas putida KT2440 hypothetical protein NP_745917.1 4315002 D 160488 CDS NP_745918.1 26990493 1046461 4315916..4317469 1 NC_002947.3 similar to SP:O30409, and GP:3510629; identified by sequence similarity; non-ribosomal peptide synthetase 4317469 1046461 PP_3788 Pseudomonas putida KT2440 non-ribosomal peptide synthetase NP_745918.1 4315916 D 160488 CDS NP_745919.1 26990494 1046416 4317738..4318958 1 NC_002947.3 similar to GP:10175834, and GP:9947140; identified by sequence similarity; efflux transporter 4318958 1046416 PP_3789 Pseudomonas putida KT2440 efflux transporter NP_745919.1 4317738 D 160488 CDS NP_745920.1 26990495 1046393 4319028..4319834 1 NC_002947.3 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 4319834 dapF 1046393 dapF Pseudomonas putida KT2440 diaminopimelate epimerase NP_745920.1 4319028 D 160488 CDS NP_745921.1 26990496 1047024 complement(4320136..4320762) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00589; phage integrase site specific recombinase 4320762 1047024 PP_3791 Pseudomonas putida KT2440 phage integrase site specific recombinase NP_745921.1 4320136 R 160488 CDS NP_745922.1 26990497 1041879 complement(4321854..4321988) 1 NC_002947.3 similar to GP:9187576; identified by sequence similarity; hypothetical protein 4321988 1041879 PP_3792 Pseudomonas putida KT2440 hypothetical protein NP_745922.1 4321854 R 160488 CDS NP_745923.1 26990498 1045562 4322362..4323342 1 NC_002947.3 similar to GP:5059119; identified by sequence similarity; transposase 4323342 1045562 PP_3793 Pseudomonas putida KT2440 transposase NP_745923.1 4322362 D 160488 CDS NP_745924.1 26990499 1046541 4323707..4324633 1 NC_002947.3 specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase 4324633 pbpG 1046541 pbpG Pseudomonas putida KT2440 D-alanyl-D-alanine endopeptidase NP_745924.1 4323707 D 160488 CDS NP_745925.1 26990500 1046473 complement(4324900..4325346) 1 NC_002947.3 hypothetical protein 4325346 1046473 PP_3795 Pseudomonas putida KT2440 hypothetical protein NP_745925.1 4324900 R 160488 CDS NP_745926.1 26990501 1046390 4325521..4326855 1 NC_002947.3 similar to GP:9948427, GB:X15144, SP:P26998, and PID:1340162; identified by sequence similarity; L-ornithine N5-oxygenase 4326855 1046390 PP_3796 Pseudomonas putida KT2440 L-ornithine N5-oxygenase NP_745926.1 4325521 D 160488 CDS NP_745927.1 26990502 1046569 4327031..4328224 1 NC_002947.3 identified by match to PFAM protein family HMM PF03929; hypothetical protein 4328224 1046569 PP_3797 Pseudomonas putida KT2440 hypothetical protein NP_745927.1 4327031 D 160488 CDS NP_745928.1 26990503 1046552 4328221..4328754 1 NC_002947.3 hypothetical protein 4328754 1046552 PP_3798 Pseudomonas putida KT2440 hypothetical protein NP_745928.1 4328221 D 160488 CDS NP_745929.1 26990504 1046555 4328751..4329071 1 NC_002947.3 hypothetical protein 4329071 1046555 PP_3799 Pseudomonas putida KT2440 hypothetical protein NP_745929.1 4328751 D 160488 CDS NP_745930.1 26990505 1046765 4329068..4329637 1 NC_002947.3 hypothetical protein 4329637 1046765 PP_3800 Pseudomonas putida KT2440 hypothetical protein NP_745930.1 4329068 D 160488 CDS NP_745931.1 26990506 1046766 4329654..4330556 1 NC_002947.3 identified by match to PFAM protein family HMM PF01297; ABC transporter substrate-binding protein 4330556 1046766 PP_3801 Pseudomonas putida KT2440 ABC transporter substrate-binding protein NP_745931.1 4329654 D 160488 CDS NP_745932.1 26990507 1046763 4330553..4331299 1 NC_002947.3 identified by match to PFAM protein family HMM PF00005; cation ABC transporter ATP-binding protein 4331299 1046763 PP_3802 Pseudomonas putida KT2440 cation ABC transporter ATP-binding protein NP_745932.1 4330553 D 160488 CDS NP_745933.1 26990508 1046762 4331299..4332198 1 NC_002947.3 identified by match to PFAM protein family HMM PF00950; hypothetical protein 4332198 1046762 PP_3803 Pseudomonas putida KT2440 hypothetical protein NP_745933.1 4331299 D 160488 CDS NP_745934.1 26990509 1046761 4332195..4333058 1 NC_002947.3 identified by match to PFAM protein family HMM PF01297; hypothetical protein 4333058 1046761 PP_3804 Pseudomonas putida KT2440 hypothetical protein NP_745934.1 4332195 D 160488 CDS NP_745935.1 26990510 1046760 complement(4333142..4334194) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02167; hypothetical protein 4334194 1046760 PP_3805 Pseudomonas putida KT2440 hypothetical protein NP_745935.1 4333142 R 160488 CDS NP_745936.1 26990511 1046759 complement(4334221..4334772) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00857; isochorismatase superfamily hydrolase 4334772 1046759 PP_3806 Pseudomonas putida KT2440 isochorismatase superfamily hydrolase NP_745936.1 4334221 R 160488 CDS NP_745937.1 26990512 1046758 complement(4334829..4335548) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01738; thioesterase 4335548 1046758 PP_3807 Pseudomonas putida KT2440 thioesterase NP_745937.1 4334829 R 160488 CDS NP_745938.1 26990513 1046757 complement(4335545..4335766) 1 NC_002947.3 similar to GP:9948456; identified by sequence similarity; balhimycin biosynthetic protein MbtH 4335766 1046757 PP_3808 Pseudomonas putida KT2440 balhimycin biosynthetic protein MbtH NP_745938.1 4335545 R 160488 CDS NP_745939.1 26990514 1046756 complement(4335778..4335870) 1 NC_002947.3 hypothetical protein 4335870 1046756 PP_3809 Pseudomonas putida KT2440 hypothetical protein NP_745939.1 4335778 R 160488 CDS NP_745940.1 26990515 1046755 complement(4335900..4336301) 1 NC_002947.3 hypothetical protein 4336301 1046755 PP_3810 Pseudomonas putida KT2440 hypothetical protein NP_745940.1 4335900 R 160488 CDS NP_745941.1 26990516 1046754 complement(4336328..4337212) 1 NC_002947.3 similar to GP:9947128; identified by sequence similarity; LysR family transcriptional regulator 4337212 1046754 PP_3811 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_745941.1 4336328 R 160488 CDS NP_745942.1 26990517 1046753 4337359..4338378 1 NC_002947.3 alpha/beta hydrolase 4338378 1046753 PP_3812 Pseudomonas putida KT2440 alpha/beta hydrolase NP_745942.1 4337359 D 160488 CDS NP_745943.1 26990518 1046752 4338892..4340013 1 NC_002947.3 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II 4340013 ribBA-2 1046752 ribBA-2 Pseudomonas putida KT2440 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II NP_745943.1 4338892 D 160488 CDS NP_745944.1 26990519 1046751 4340344..4341369 1 NC_002947.3 similar to GP:6689865; identified by sequence similarity; polyamine ABC transporter substrate-binding protein 4341369 1046751 PP_3814 Pseudomonas putida KT2440 polyamine ABC transporter substrate-binding protein NP_745944.1 4340344 D 160488 CDS NP_745945.1 26990520 1046750 4341366..4342283 1 NC_002947.3 similar to GB:X14967, SP:P15008, PID:43551, and PID:2425181; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein 4342283 1046750 PP_3815 Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_745945.1 4341366 D 160488 CDS NP_745946.1 26990521 1046749 4342290..4343099 1 NC_002947.3 similar to GB:X14967, SP:P15008, PID:43551, and PID:2425181; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein 4343099 1046749 PP_3816 Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_745946.1 4342290 D 160488 CDS NP_745947.1 26990522 1046748 4343119..4344267 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01187; polyamine ABC transporter ATP-binding protein 4344267 1046748 PP_3817 Pseudomonas putida KT2440 polyamine ABC transporter ATP-binding protein NP_745947.1 4343119 D 160488 CDS NP_745948.1 26990523 1046747 4344423..4345730 1 NC_002947.3 identified by match to PFAM protein family HMM PF01449; OmpA/MotB domain-containing protein 4345730 1046747 PP_3818 Pseudomonas putida KT2440 OmpA/MotB domain-containing protein NP_745948.1 4344423 D 160488 CDS NP_745949.1 26990524 1046746 complement(4345734..4347089) 1 NC_002947.3 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 4347089 gor 1046746 gor Pseudomonas putida KT2440 glutathione reductase NP_745949.1 4345734 R 160488 CDS NP_745950.1 26990525 1046745 complement(4347212..4348633) 1 NC_002947.3 similar to GB:L01112, SP:P45375, PID:145016, and PID:1247706; identified by sequence similarity; group II intron-encoding maturase 4348633 1046745 PP_3820 Pseudomonas putida KT2440 group II intron-encoding maturase NP_745950.1 4347212 R 160488 CDS NP_745951.1 26990526 1046744 complement(4349107..4349946) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 4349946 galU 1046744 galU Pseudomonas putida KT2440 UTP-glucose-1-phosphate uridylyltransferase NP_745951.1 4349107 R 160488 CDS NP_745952.1 26990527 1046743 complement(4350183..4351097) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00034; cytochrome c family protein 4351097 1046743 PP_3822 Pseudomonas putida KT2440 cytochrome c family protein NP_745952.1 4350183 R 160488 CDS NP_745953.1 26990528 1046742 complement(4351094..4351747) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00034; cytochrome c-type protein 4351747 1046742 PP_3823 Pseudomonas putida KT2440 cytochrome c-type protein NP_745953.1 4351094 R 160488 CDS NP_745954.1 26990529 1046741 complement(4351822..4352202) 1 NC_002947.3 hypothetical protein 4352202 1046741 PP_3824 Pseudomonas putida KT2440 hypothetical protein NP_745954.1 4351822 R 160488 CDS NP_745955.1 26990530 1046740 4352341..4352643 1 NC_002947.3 hypothetical protein 4352643 1046740 PP_3825 Pseudomonas putida KT2440 hypothetical protein NP_745955.1 4352341 D 160488 CDS NP_745956.1 26990531 1046739 complement(4352636..4352833) 1 NC_002947.3 hypothetical protein 4352833 1046739 PP_3826 Pseudomonas putida KT2440 hypothetical protein NP_745956.1 4352636 R 160488 CDS NP_745957.1 26990532 1046738 4352873..4353958 1 NC_002947.3 similar to GP:9950413; identified by sequence similarity; hypothetical protein 4353958 1046738 PP_3827 Pseudomonas putida KT2440 hypothetical protein NP_745957.1 4352873 D 160488 CDS NP_745958.1 26990533 1046737 4354041..4354799 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01256; molybdenum ABC transporter substrate-binding protein 4354799 modA 1046737 modA Pseudomonas putida KT2440 molybdenum ABC transporter substrate-binding protein NP_745958.1 4354041 D 160488 CDS NP_745959.1 26990534 1046736 4354799..4355479 1 NC_002947.3 similar to GB:L07738, GB:Z19603, SP:Q06432, PID:306473, and PID:450530; identified by sequence similarity; molybdate ABC transporter permease 4355479 modB 1046736 modB Pseudomonas putida KT2440 molybdate ABC transporter permease NP_745959.1 4354799 D 160488 CDS NP_745960.1 26990535 1046735 4355481..4356572 1 NC_002947.3 similar to GP:9947850; identified by sequence similarity; molybdate ABC transporter ATPase 4356572 modC 1046735 modC Pseudomonas putida KT2440 molybdate ABC transporter ATPase NP_745960.1 4355481 D 160488 CDS NP_745961.1 26990536 1046734 4356630..4357652 1 NC_002947.3 identified by match to PFAM protein family HMM PF01028; DNA topoisomerase 4357652 1046734 PP_3831 Pseudomonas putida KT2440 DNA topoisomerase NP_745961.1 4356630 D 160488 CDS NP_745962.1 26990537 1046733 4357906..4358103 1 NC_002947.3 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 4358103 1046733 PP_3832 Pseudomonas putida KT2440 carbon storage regulator NP_745962.1 4357906 D 160488 CDS NP_745963.1 26990538 1046732 complement(4358143..4358496) 1 NC_002947.3 similar to GP:3236110; identified by sequence similarity; response regulator receiver protein 4358496 1046732 PP_3833 Pseudomonas putida KT2440 response regulator receiver protein NP_745963.1 4358143 R 160488 CDS NP_745964.1 26990539 1046731 complement(4358508..4359953) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01189; non-specific serine/threonine protein kinase 4359953 1046731 PP_3834 Pseudomonas putida KT2440 non-specific serine/threonine protein kinase NP_745964.1 4358508 R 160488 CDS NP_745965.1 26990540 1046730 complement(4359959..4361119) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02518; PAS/PAC sensor signal transduction histidine kinase 4361119 1046730 PP_3835 Pseudomonas putida KT2440 PAS/PAC sensor signal transduction histidine kinase NP_745965.1 4359959 R 160488 CDS NP_745966.1 26990541 1046729 complement(4361204..4361539) 1 NC_002947.3 hypothetical protein 4361539 1046729 PP_3836 Pseudomonas putida KT2440 hypothetical protein NP_745966.1 4361204 R 160488 CDS NP_745967.1 26990542 1046728 4361868..4362281 1 NC_002947.3 similar to SP:P25919, and PID:152706; identified by sequence similarity; SURF4 domain-containing protein 4362281 1046728 PP_3837 Pseudomonas putida KT2440 SURF4 domain-containing protein NP_745967.1 4361868 D 160488 CDS NP_745968.1 26990543 1046727 4362271..4362510 1 NC_002947.3 hypothetical protein 4362510 1046727 PP_3838 Pseudomonas putida KT2440 hypothetical protein NP_745968.1 4362271 D 160488 CDS NP_745969.1 26990544 1046726 4362913..4363923 1 NC_002947.3 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 4363923 1046726 PP_3839 Pseudomonas putida KT2440 alcohol dehydrogenase NP_745969.1 4362913 D 160488 CDS NP_745970.1 26990545 1046725 4363997..4364221 1 NC_002947.3 hypothetical protein 4364221 1046725 PP_3840 Pseudomonas putida KT2440 hypothetical protein NP_745970.1 4363997 D 160488 CDS NP_745971.1 26990546 1046724 complement(4364766..4365137) 1 NC_002947.3 similar to GP:1841790; identified by sequence similarity; MerR family transcriptional regulator 4365137 1046724 PP_3841 Pseudomonas putida KT2440 MerR family transcriptional regulator NP_745971.1 4364766 R 160488 CDS NP_745972.1 26990547 1046723 4365210..4366307 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01746; hypothetical protein 4366307 1046723 PP_3842 Pseudomonas putida KT2440 hypothetical protein NP_745972.1 4365210 D 160488 CDS NP_745973.1 26990548 1046722 complement(4366433..4366732) 1 NC_002947.3 hypothetical protein 4366732 1046722 PP_3843 Pseudomonas putida KT2440 hypothetical protein NP_745973.1 4366433 R 160488 CDS NP_745974.1 26990549 1046721 complement(4366912..4368045) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03576; D-aminopeptidase 4368045 1046721 PP_3844 Pseudomonas putida KT2440 D-aminopeptidase NP_745974.1 4366912 R 160488 CDS NP_745975.1 26990550 1046720 complement(4368119..4369228) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01547; polyamine ABC transporter substrate-binding protein 4369228 1046720 PP_3845 Pseudomonas putida KT2440 polyamine ABC transporter substrate-binding protein NP_745975.1 4368119 R 160488 CDS NP_745976.1 26990551 1046719 complement(4369369..4370184) 1 NC_002947.3 similar to GP:9949754; identified by sequence similarity; carbon-nitrogen hydrolase 4370184 1046719 PP_3846 Pseudomonas putida KT2440 carbon-nitrogen hydrolase NP_745976.1 4369369 R 160488 CDS NP_745977.1 26990552 1046718 4370305..4371102 1 NC_002947.3 identified by match to PFAM protein family HMM PF00196; LuxR family transcriptional regulator 4371102 1046718 PP_3847 Pseudomonas putida KT2440 LuxR family transcriptional regulator NP_745977.1 4370305 D 160488 CDS NP_745978.1 26990553 1046717 4371340..4371447 1 NC_002947.3 hypothetical protein 4371447 1046717 PP_3848 Pseudomonas putida KT2440 hypothetical protein NP_745978.1 4371340 D 160488 CDS NP_745979.1 26990554 1046716 4372649..4374955 1 NC_002947.3 similar to GB:U12789, SP:P54868, PID:555833, and PID:619877; identified by sequence similarity; calcium-binding protein, hemolysin-type 4374955 1046716 PP_3849 Pseudomonas putida KT2440 calcium-binding protein, hemolysin-type NP_745979.1 4372649 D 160488 CDS NP_745980.1 26990555 1046715 complement(4375034..4375297) 1 NC_002947.3 hypothetical protein 4375297 1046715 PP_3850 Pseudomonas putida KT2440 hypothetical protein NP_745980.1 4375034 R 160488 CDS NP_745981.1 26990556 1046714 complement(4375643..4375966) 1 NC_002947.3 hypothetical protein 4375966 1046714 PP_3851 Pseudomonas putida KT2440 hypothetical protein NP_745981.1 4375643 R 160488 CDS NP_745982.1 26990557 1046713 complement(4376082..4377638) 1 NC_002947.3 hypothetical protein 4377638 1046713 PP_3852 Pseudomonas putida KT2440 hypothetical protein NP_745982.1 4376082 R 160488 CDS NP_745983.1 26990558 1046712 4377659..4378042 1 NC_002947.3 hypothetical protein 4378042 1046712 PP_3853 Pseudomonas putida KT2440 hypothetical protein NP_745983.1 4377659 D 160488 CDS NP_745984.1 26990559 1046711 complement(4378171..4378710) 1 NC_002947.3 similar to GP:8895133, SP:P37750, GB:U03041, GB:U09876, PID:508245, and PID:510256; identified by sequence similarity; endolysin 4378710 1046711 PP_3854 Pseudomonas putida KT2440 endolysin NP_745984.1 4378171 R 160488 CDS NP_745985.1 26990560 1046710 complement(4379112..4379336) 1 NC_002947.3 hypothetical protein 4379336 1046710 PP_3855 Pseudomonas putida KT2440 hypothetical protein NP_745985.1 4379112 R 160488 CDS NP_745986.1 26990561 1046709 complement(4379759..4380523) 1 NC_002947.3 hypothetical protein 4380523 1046709 PP_3856 Pseudomonas putida KT2440 hypothetical protein NP_745986.1 4379759 R 160488 CDS NP_745987.1 26990562 1046708 complement(4380535..4382787) 1 NC_002947.3 hypothetical protein 4382787 1046708 PP_3857 Pseudomonas putida KT2440 hypothetical protein NP_745987.1 4380535 R 160488 CDS NP_745988.1 26990563 1046707 complement(4383049..4383852) 1 NC_002947.3 similar to GP:9309376; identified by sequence similarity; tail fiber protein 4383852 1046707 PP_3858 Pseudomonas putida KT2440 tail fiber protein NP_745988.1 4383049 R 160488 CDS NP_745989.1 26990564 1046706 complement(4383855..4384499) 1 NC_002947.3 similar to SP:Q9T1V1, and SP:P09947; identified by sequence similarity; hypothetical protein 4384499 1046706 PP_3859 Pseudomonas putida KT2440 hypothetical protein NP_745989.1 4383855 R 160488 CDS NP_745990.1 26990565 1046705 complement(4384490..4385533) 1 NC_002947.3 similar to SP:P44240, GB:L10972, and PID:425440; identified by sequence similarity; phage FluMu protein gp47 4385533 1046705 PP_3860 Pseudomonas putida KT2440 phage FluMu protein gp47 NP_745990.1 4384490 R 160488 CDS NP_745991.1 26990566 1046704 complement(4385523..4385909) 1 NC_002947.3 similar to SP:Q9T1V3, SP:Q9T1V3, and SP:P44239; identified by sequence similarity; phage FluMu protein gp46 4385909 1046704 PP_3861 Pseudomonas putida KT2440 phage FluMu protein gp46 NP_745991.1 4385523 R 160488 CDS NP_745992.1 26990567 1046703 complement(4385906..4386406) 1 NC_002947.3 similar to SP:Q9T1V4; identified by sequence similarity; phage assembly protein 4386406 1046703 PP_3862 Pseudomonas putida KT2440 phage assembly protein NP_745992.1 4385906 R 160488 CDS NP_745993.1 26990568 1046702 complement(4386415..4387524) 1 NC_002947.3 similar to SP:P22183, GB:M35034, GB:X55034, PID:147817, PID:40847, GB:U00096, PID:1786267, SP:P22183, GB:M35034, GB:X55034, PID:147817, PID:40847, GB:U00096, and PID:1786267; identified by sequence similarity; phage tail protein 4387524 1046702 PP_3863 Pseudomonas putida KT2440 phage tail protein NP_745993.1 4386415 R 160488 CDS NP_745994.1 26990569 1046701 complement(4387528..4388790) 1 NC_002947.3 similar to PIR:A64127, and SP:P71389; identified by sequence similarity; phage FluMu DNA circulation protein 4388790 1046701 PP_3864 Pseudomonas putida KT2440 phage FluMu DNA circulation protein NP_745994.1 4387528 R 160488 CDS NP_745995.1 26990570 1046700 complement(4388783..4390738) 1 NC_002947.3 similar to GP:15212238; identified by sequence similarity; phage tail protein 4390738 1046700 PP_3865 Pseudomonas putida KT2440 phage tail protein NP_745995.1 4388783 R 160488 CDS NP_745996.1 26990571 1046699 complement(4390868..4391191) 1 NC_002947.3 similar to GP:2852350; identified by sequence similarity; hypothetical protein 4391191 1046699 PP_3866 Pseudomonas putida KT2440 hypothetical protein NP_745996.1 4390868 R 160488 CDS NP_745997.1 26990572 1046698 complement(4391161..4391514) 1 NC_002947.3 similar to GB:L10971, GB:L10971, PID:425438, GB:L10971, GB:L10971, and PID:425438; identified by sequence similarity; phage tail tube protein 4391514 1046698 PP_3867 Pseudomonas putida KT2440 phage tail tube protein NP_745997.1 4391161 R 160488 CDS NP_745998.1 26990573 1046697 complement(4391591..4393012) 1 NC_002947.3 similar to GB:L01112, SP:P45375, PID:145016, and PID:1247706; identified by sequence similarity; group II intron-encoding maturase 4393012 1046697 PP_3868 Pseudomonas putida KT2440 group II intron-encoding maturase NP_745998.1 4391591 R 160488 CDS NP_745999.1 26990574 1046696 complement(4393482..4394969) 1 NC_002947.3 similar to GB:Z23169, PID:313353, GB:L10971, GB:L10971, PID:425438, GB:L10971, GB:L10971, and PID:425438; identified by sequence similarity; phage sheath protein 4394969 1046696 PP_3869 Pseudomonas putida KT2440 phage sheath protein NP_745999.1 4393482 R 160488 CDS NP_746000.1 26990575 1046695 complement(4394969..4395172) 1 NC_002947.3 similar to GP:1834290, and SP:P44232; identified by sequence similarity; phage FluMu protein gp38 4395172 1046695 PP_3870 Pseudomonas putida KT2440 phage FluMu protein gp38 NP_746000.1 4394969 R 160488 CDS NP_746001.1 26990576 1046694 complement(4395178..4395645) 1 NC_002947.3 hypothetical protein 4395645 1046694 PP_3871 Pseudomonas putida KT2440 hypothetical protein NP_746001.1 4395178 R 160488 CDS NP_746002.1 26990577 1046693 4395671..4395790 1 NC_002947.3 hypothetical protein 4395790 1046693 PP_3872 Pseudomonas putida KT2440 hypothetical protein NP_746002.1 4395671 D 160488 CDS NP_746003.1 26990578 1046692 complement(4395801..4396316) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01725; hypothetical protein 4396316 1046692 PP_3873 Pseudomonas putida KT2440 hypothetical protein NP_746003.1 4395801 R 160488 CDS NP_746004.1 26990579 1046691 complement(4396309..4396683) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01563; hypothetical protein 4396683 1046691 PP_3874 Pseudomonas putida KT2440 hypothetical protein NP_746004.1 4396309 R 160488 CDS NP_746005.1 26990580 1046690 complement(4396686..4397237) 1 NC_002947.3 hypothetical protein 4397237 1046690 PP_3875 Pseudomonas putida KT2440 hypothetical protein NP_746005.1 4396686 R 160488 CDS NP_746006.1 26990581 1046689 complement(4397240..4397566) 1 NC_002947.3 hypothetical protein 4397566 1046689 PP_3876 Pseudomonas putida KT2440 hypothetical protein NP_746006.1 4397240 R 160488 CDS NP_746007.1 26990582 1046688 complement(4397541..4399013) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01554; hypothetical protein 4399013 1046688 PP_3877 Pseudomonas putida KT2440 hypothetical protein NP_746007.1 4397541 R 160488 CDS NP_746008.1 26990583 1046687 complement(4398916..4399887) 1 NC_002947.3 similar to GP:6723229, and GP:6723247; identified by sequence similarity; phage minor capsid protein C 4399887 1046687 PP_3878 Pseudomonas putida KT2440 phage minor capsid protein C NP_746008.1 4398916 R 160488 CDS NP_746009.1 26990584 1046686 complement(4399884..4401155) 1 NC_002947.3 similar to GP:6739661, SP:P17058, PID:46001, and PID:46126; identified by sequence similarity; HK97 family phage portal protein 4401155 1046686 PP_3879 Pseudomonas putida KT2440 HK97 family phage portal protein NP_746009.1 4399884 R 160488 CDS NP_746010.1 26990585 1046685 complement(4401158..4401346) 1 NC_002947.3 hypothetical protein 4401346 1046685 PP_3880 Pseudomonas putida KT2440 hypothetical protein NP_746010.1 4401158 R 160488 CDS NP_746011.1 26990586 1046684 complement(4401343..4403151) 1 NC_002947.3 similar to GP:3128374, and GP:6739656; identified by sequence similarity; phage terminase, large subunit 4403151 1046684 PP_3881 Pseudomonas putida KT2440 phage terminase, large subunit NP_746011.1 4401343 R 160488 CDS NP_746012.1 26990587 1046683 complement(4403111..4403578) 1 NC_002947.3 similar to GP:6066822; identified by sequence similarity; phage terminase small subunit 4403578 1046683 PP_3882 Pseudomonas putida KT2440 phage terminase small subunit NP_746012.1 4403111 R 160488 CDS NP_746013.1 26990588 1046682 complement(4403714..4404034) 1 NC_002947.3 similar to GP:6901612, GB:L24552, SP:P41102, and PID:404082; identified by sequence similarity; phage holin 4404034 1046682 PP_3883 Pseudomonas putida KT2440 phage holin NP_746013.1 4403714 R 160488 CDS NP_746014.1 26990589 1046681 complement(4404038..4404361) 1 NC_002947.3 similar to GP:6066815, GB:L04569, GB:M57971, GB:Z34811, GB:Z34812, GB:Z34821, GB:Z34822, GB:Z34809, GB:Z34810, GB:Z34813, GB:Z34814, GB:Z34815, GB:Z34816, GB:Z34817, GB:Z34818, GB:Z34819, GB:Z34820, GB:M57972, GB:M91370, GB:Z26294, GB:Z26295, PID:291895, PID:501073, PID:508183, PID:508185, PID:508187, PID:508189, PID:508191, PID:508193, PID:508195, PID:508197, PID:508199, PID:508201, PID:509048, PID:509068, PID:509168, PID:509178, PID:509341, and PID:509344; identified by sequence similarity; phage holin 4404361 1046681 PP_3884 Pseudomonas putida KT2440 phage holin NP_746014.1 4404038 R 160488 CDS NP_746015.1 26990590 1046680 complement(4404792..4404899) 1 NC_002947.3 hypothetical protein 4404899 1046680 PP_3885 Pseudomonas putida KT2440 hypothetical protein NP_746015.1 4404792 R 160488 CDS NP_746016.1 26990591 1046679 complement(4405298..4405558) 1 NC_002947.3 hypothetical protein 4405558 1046679 PP_3886 Pseudomonas putida KT2440 hypothetical protein NP_746016.1 4405298 R 160488 CDS NP_746017.1 26990592 1046678 complement(4405542..4406213) 1 NC_002947.3 hypothetical protein 4406213 1046678 PP_3887 Pseudomonas putida KT2440 hypothetical protein NP_746017.1 4405542 R 160488 CDS NP_746018.1 26990593 1046677 complement(4406226..4406546) 1 NC_002947.3 hypothetical protein 4406546 1046677 PP_3888 Pseudomonas putida KT2440 hypothetical protein NP_746018.1 4406226 R 160488 CDS NP_746019.1 26990594 1046676 complement(4406543..4407841) 1 NC_002947.3 similar to GB:M15502, SP:P07954, PID:1545996, and PID:182794; identified by sequence similarity; phage integrase 4407841 1046676 PP_3889 Pseudomonas putida KT2440 phage integrase NP_746019.1 4406543 R 160488 CDS NP_746020.1 26990595 1046675 complement(4407838..4408281) 1 NC_002947.3 hypothetical protein 4408281 1046675 PP_3890 Pseudomonas putida KT2440 hypothetical protein NP_746020.1 4407838 R 160488 CDS NP_746021.1 26990596 1046674 complement(4408430..4408726) 1 NC_002947.3 similar to GP:6901638, and GP:6901638; identified by sequence similarity; hypothetical protein 4408726 1046674 PP_3891 Pseudomonas putida KT2440 hypothetical protein NP_746021.1 4408430 R 160488 CDS NP_746022.1 26990597 1046673 complement(4408708..4408914) 1 NC_002947.3 hypothetical protein 4408914 1046673 PP_3892 Pseudomonas putida KT2440 hypothetical protein NP_746022.1 4408708 R 160488 CDS NP_746023.1 26990598 1046672 complement(4408914..4410311) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00665; phage DNA helicase 4410311 1046672 PP_3893 Pseudomonas putida KT2440 phage DNA helicase NP_746023.1 4408914 R 160488 CDS NP_746024.1 26990599 1046671 complement(4410308..4411138) 1 NC_002947.3 similar to GP:8895171, SP:Q02103, GB:X63438, and PID:40785; identified by sequence similarity; phage replication protein O 4411138 1046671 PP_3894 Pseudomonas putida KT2440 phage replication protein O NP_746024.1 4410308 R 160488 CDS NP_746025.1 26990600 1046670 complement(4411463..4411675) 1 NC_002947.3 similar to GB:D14539, GB:L04285, SP:Q03111, PID:182110, and PID:436042; identified by sequence similarity; regulatory protein Cro 4411675 1046670 PP_3895 Pseudomonas putida KT2440 regulatory protein Cro NP_746025.1 4411463 R 160488 CDS NP_746026.1 26990601 1046669 4411763..4412410 1 NC_002947.3 identified by match to PFAM protein family HMM PF01381; Cro/CI family transcriptional regulator 4412410 1046669 PP_3896 Pseudomonas putida KT2440 Cro/CI family transcriptional regulator NP_746026.1 4411763 D 160488 CDS NP_746027.1 26990602 1046668 4412468..4412881 1 NC_002947.3 hypothetical protein 4412881 1046668 PP_3897 Pseudomonas putida KT2440 hypothetical protein NP_746027.1 4412468 D 160488 CDS NP_746028.1 26990603 1046667 4412925..4413161 1 NC_002947.3 similar to SP:P45567; identified by sequence similarity; hypothetical protein 4413161 1046667 PP_3898 Pseudomonas putida KT2440 hypothetical protein NP_746028.1 4412925 D 160488 CDS NP_746029.1 26990604 1046666 complement(4415057..4415389) 1 NC_002947.3 similar to GP:3603326, and GP:3603326; identified by sequence similarity; hicB protein 4415389 hicB-2 1046666 hicB-2 Pseudomonas putida KT2440 hicB protein NP_746029.1 4415057 R 160488 CDS NP_746030.1 26990605 1046665 complement(4415398..4415646) 1 NC_002947.3 similar to GP:3603325, and GP:3603325; identified by sequence similarity; hicA protein 4415646 hicA-2 1046665 hicA-2 Pseudomonas putida KT2440 hicA protein NP_746030.1 4415398 R 160488 CDS NP_746031.1 26990606 1046664 4415796..4416056 1 NC_002947.3 hypothetical protein 4416056 1046664 PP_3901 Pseudomonas putida KT2440 hypothetical protein NP_746031.1 4415796 D 160488 CDS NP_746032.1 26990607 1046663 complement(4416175..4416483) 1 NC_002947.3 hypothetical protein 4416483 1046663 PP_3902 Pseudomonas putida KT2440 hypothetical protein NP_746032.1 4416175 R 160488 CDS NP_746033.1 26990608 1046662 4416473..4416637 1 NC_002947.3 hypothetical protein 4416637 1046662 PP_3903 Pseudomonas putida KT2440 hypothetical protein NP_746033.1 4416473 D 160488 CDS NP_746034.1 26990609 1046661 complement(4416843..4417097) 1 NC_002947.3 hypothetical protein 4417097 1046661 PP_3904 Pseudomonas putida KT2440 hypothetical protein NP_746034.1 4416843 R 160488 CDS NP_746035.1 26990610 1046660 4417106..4417657 1 NC_002947.3 identified by match to PFAM protein family HMM PF00196; LuxR family transcriptional regulator 4417657 1046660 PP_3905 Pseudomonas putida KT2440 LuxR family transcriptional regulator NP_746035.1 4417106 D 160488 CDS NP_746036.1 26990611 1046659 4417677..4417946 1 NC_002947.3 hypothetical protein 4417946 1046659 PP_3906 Pseudomonas putida KT2440 hypothetical protein NP_746036.1 4417677 D 160488 CDS NP_746037.1 26990612 1046658 4417943..4418401 1 NC_002947.3 hypothetical protein 4418401 1046658 PP_3907 Pseudomonas putida KT2440 hypothetical protein NP_746037.1 4417943 D 160488 CDS NP_746038.1 26990613 1046657 4418483..4418833 1 NC_002947.3 hypothetical protein 4418833 1046657 PP_3908 Pseudomonas putida KT2440 hypothetical protein NP_746038.1 4418483 D 160488 CDS NP_746039.1 26990614 1046656 complement(4418847..4419125) 1 NC_002947.3 hypothetical protein 4419125 1046656 PP_3909 Pseudomonas putida KT2440 hypothetical protein NP_746039.1 4418847 R 160488 CDS NP_746040.1 26990615 1046655 4419112..4419783 1 NC_002947.3 hypothetical protein 4419783 1046655 PP_3910 Pseudomonas putida KT2440 hypothetical protein NP_746040.1 4419112 D 160488 CDS NP_746041.1 26990616 1046654 4419798..4420181 1 NC_002947.3 hypothetical protein 4420181 1046654 PP_3911 Pseudomonas putida KT2440 hypothetical protein NP_746041.1 4419798 D 160488 CDS NP_746042.1 26990617 1046653 4420249..4421910 1 NC_002947.3 similar to GP:9106848; identified by sequence similarity; DNA-cytosine methyltransferase 4421910 1046653 PP_3912 Pseudomonas putida KT2440 DNA-cytosine methyltransferase NP_746042.1 4420249 D 160488 CDS NP_746043.1 26990618 1046652 4421907..4422596 1 NC_002947.3 hypothetical protein 4422596 1046652 PP_3913 Pseudomonas putida KT2440 hypothetical protein NP_746043.1 4421907 D 160488 CDS NP_746044.1 26990619 1046651 4423111..4423494 1 NC_002947.3 hypothetical protein 4423494 1046651 PP_3914 Pseudomonas putida KT2440 hypothetical protein NP_746044.1 4423111 D 160488 CDS NP_746045.1 26990620 1046650 4423766..4424089 1 NC_002947.3 hypothetical protein 4424089 1046650 PP_3915 Pseudomonas putida KT2440 hypothetical protein NP_746045.1 4423766 D 160488 CDS NP_746046.1 26990621 1046649 4424086..4424478 1 NC_002947.3 hypothetical protein 4424478 1046649 PP_3916 Pseudomonas putida KT2440 hypothetical protein NP_746046.1 4424086 D 160488 CDS NP_746047.1 26990622 1046648 4425740..4426078 1 NC_002947.3 hypothetical protein 4426078 1046648 PP_3917 Pseudomonas putida KT2440 hypothetical protein NP_746047.1 4425740 D 160488 CDS NP_746048.1 26990623 1046647 complement(4426015..4426119) 1 NC_002947.3 hypothetical protein 4426119 1046647 PP_3918 Pseudomonas putida KT2440 hypothetical protein NP_746048.1 4426015 R 160488 CDS NP_746049.1 26990624 1046646 4426118..4426363 1 NC_002947.3 hypothetical protein 4426363 1046646 PP_3919 Pseudomonas putida KT2440 hypothetical protein NP_746049.1 4426118 D 160488 CDS NP_746050.1 26990625 1046645 4426365..4427414 1 NC_002947.3 similar to GP:9107449; identified by sequence similarity; phage integrase 4427414 1046645 PP_3920 Pseudomonas putida KT2440 phage integrase NP_746050.1 4426365 D 160488 CDS NP_746051.1 26990626 1046644 complement(4427580..4427678) 1 NC_002947.3 hypothetical protein 4427678 1046644 PP_3921 Pseudomonas putida KT2440 hypothetical protein NP_746051.1 4427580 R 160488 CDS NP_746052.1 26990627 1046643 complement(4427744..4428763) 1 NC_002947.3 SohB; periplasmic protein; member of the peptidase S49 family; protease 4428763 1046643 PP_3922 Pseudomonas putida KT2440 protease NP_746052.1 4427744 R 160488 CDS NP_746053.1 26990628 1046642 4428961..4429671 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00249; phosphoglycerate mutase 4429671 1046642 PP_3923 Pseudomonas putida KT2440 phosphoglycerate mutase NP_746053.1 4428961 D 160488 CDS NP_746054.1 26990629 1046641 4429728..4430045 1 NC_002947.3 identified by match to PFAM protein family HMM PF02036; sterol-binding domain-containing protein 4430045 1046641 PP_3924 Pseudomonas putida KT2440 sterol-binding domain-containing protein NP_746054.1 4429728 D 160488 CDS NP_746055.1 26990630 1046640 4430229..4431296 1 NC_002947.3 similar to GP:9947815; identified by sequence similarity; aminoglycoside phosphotransferase 4431296 1046640 PP_3925 Pseudomonas putida KT2440 aminoglycoside phosphotransferase NP_746055.1 4430229 D 160488 CDS NP_746056.1 26990631 1046639 4431333..4432100 1 NC_002947.3 identified by match to PFAM protein family HMM PF00106; short chain dehydrogenase 4432100 1046639 PP_3926 Pseudomonas putida KT2440 short chain dehydrogenase NP_746056.1 4431333 D 160488 CDS NP_746057.1 26990632 1046638 complement(4432101..4432922) 1 NC_002947.3 type 12 methyltransferase 4432922 1046638 PP_3927 Pseudomonas putida KT2440 type 12 methyltransferase NP_746057.1 4432101 R 160488 CDS NP_746058.1 26990633 1046637 4433560..4433850 1 NC_002947.3 similar to SP:P76426, SP:P18021, SP:P06615, GB:X04967, PID:144169, and PID:147038; identified by sequence similarity; hypothetical protein 4433850 1046637 PP_3928 Pseudomonas putida KT2440 hypothetical protein NP_746058.1 4433560 D 160488 CDS NP_746059.1 26990634 1046636 4434013..4434279 1 NC_002947.3 hypothetical protein 4434279 1046636 PP_3929 Pseudomonas putida KT2440 hypothetical protein NP_746059.1 4434013 D 160488 CDS NP_746060.1 26990635 1046635 4434353..4434745 1 NC_002947.3 hypothetical protein 4434745 1046635 PP_3930 Pseudomonas putida KT2440 hypothetical protein NP_746060.1 4434353 D 160488 CDS NP_746061.1 26990636 1046634 4434872..4436701 1 NC_002947.3 identified by match to PFAM protein family HMM PF03600; sodium/sulfate symporter family protein 4436701 1046634 PP_3931 Pseudomonas putida KT2440 sodium/sulfate symporter family protein NP_746061.1 4434872 D 160488 CDS NP_746062.1 26990637 1046633 4437054..4438262 1 NC_002947.3 similar to GP:9105918, SP:P37828, and PID:901847; identified by sequence similarity; diguanylate cyclase 4438262 1046633 PP_3932 Pseudomonas putida KT2440 diguanylate cyclase NP_746062.1 4437054 D 160488 CDS NP_746063.1 26990638 1046632 complement(4438264..4439025) 1 NC_002947.3 similar to GP:6759580, and GP:6759580; identified by sequence similarity; hypothetical protein 4439025 1046632 PP_3933 Pseudomonas putida KT2440 hypothetical protein NP_746063.1 4438264 R 160488 CDS NP_746064.1 26990639 1046631 4439088..4440029 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 4440029 1046631 PP_3934 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_746064.1 4439088 D 160488 CDS NP_746065.1 26990640 1046630 4440130..4440339 1 NC_002947.3 hypothetical protein 4440339 1046630 PP_3935 Pseudomonas putida KT2440 hypothetical protein NP_746065.1 4440130 D 160488 CDS NP_746066.1 26990641 1046629 4440336..4440479 1 NC_002947.3 hypothetical protein 4440479 1046629 PP_3936 Pseudomonas putida KT2440 hypothetical protein NP_746066.1 4440336 D 160488 CDS NP_746067.1 26990642 1046628 complement(4440485..4440607) 1 NC_002947.3 hypothetical protein 4440607 1046628 PP_3937 Pseudomonas putida KT2440 hypothetical protein NP_746067.1 4440485 R 160488 CDS NP_746068.1 26990643 1046627 4440878..4441012 1 NC_002947.3 hypothetical protein 4441012 1046627 PP_3938 Pseudomonas putida KT2440 hypothetical protein NP_746068.1 4440878 D 160488 CDS NP_746069.1 26990644 1046626 complement(4441236..4442528) 1 NC_002947.3 similar to GP:7542442, and GP:3253207; identified by sequence similarity; porin 4442528 1046626 PP_3939 Pseudomonas putida KT2440 porin NP_746069.1 4441236 R 160488 CDS NP_746070.1 26990645 1046625 complement(4442667..4443980) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00893; major facilitator family transporter 4443980 1046625 PP_3940 Pseudomonas putida KT2440 major facilitator family transporter NP_746070.1 4442667 R 160488 CDS NP_746071.1 26990646 1046624 complement(4444189..4444830) 1 NC_002947.3 similar to GB:X12671, GB:X79536, GB:X04347, GB:U00947, PID:296650, PID:36102, PID:37610, PID:496898, GB:X12671, GB:X79536, GB:X04347, GB:U00947, PID:296650, PID:36102, PID:37610, and PID:496898; identified by sequence similarity; isochorismatase superfamily hydrolase 4444830 1046624 PP_3941 Pseudomonas putida KT2440 isochorismatase superfamily hydrolase NP_746071.1 4444189 R 160488 CDS NP_746072.1 26990647 1046623 complement(4444846..4445598) 1 NC_002947.3 similar to GP:8570038, and GP:8570038; identified by sequence similarity; maleate cis-trans isomerase 4445598 1046623 PP_3942 Pseudomonas putida KT2440 maleate cis-trans isomerase NP_746072.1 4444846 R 160488 CDS NP_746073.1 26990648 1046622 complement(4445612..4446418) 1 NC_002947.3 similar to GP:9082330; identified by sequence similarity; alpha/beta hydrolase 4446418 1046622 PP_3943 Pseudomonas putida KT2440 alpha/beta hydrolase NP_746073.1 4445612 R 160488 CDS NP_746074.1 26990649 1046621 complement(4446415..4447563) 1 NC_002947.3 similar to GP:2271503, GB:D13318, GB:U13044, GB:X84366, SP:Q06546, PID:286027, and PID:531893; identified by sequence similarity; salicylate hydroxylase 4447563 nahG 1046621 nahG Pseudomonas putida KT2440 salicylate hydroxylase NP_746074.1 4446415 R 160488 CDS NP_746075.1 26990650 1046620 4447885..4448937 1 NC_002947.3 similar to GB:L18881, GB:Z35446, GB:Z35447, GB:Z35448, GB:Z35450, GB:Z35454, SP:P48633, PID:408802, PID:516461, PID:516463, PID:516465, PID:516467, PID:516469, GB:L18881, GB:Z35446, GB:Z35447, GB:Z35448, GB:Z35450, GB:Z35454, SP:P48633, PID:408802, PID:516461, PID:516463, PID:516465, PID:516467, and PID:516469; identified by sequence similarity; hypothetical protein 4448937 1046620 PP_3945 Pseudomonas putida KT2440 hypothetical protein NP_746075.1 4447885 D 160488 CDS NP_746076.1 26990651 1046618 4449008..4449484 1 NC_002947.3 similar to GP:9947568; identified by sequence similarity; MarR family transcriptional regulator 4449484 1046618 PP_3946 Pseudomonas putida KT2440 MarR family transcriptional regulator NP_746076.1 4449008 D 160488 CDS NP_746077.1 26990652 1046617 4449926..4450399 1 NC_002947.3 similar to GB:U09367, SP:P52737, and PID:487785; identified by sequence similarity; (2Fe-2S)-binding protein 4450399 1046617 PP_3947 Pseudomonas putida KT2440 (2Fe-2S)-binding protein NP_746077.1 4449926 D 160488 CDS NP_746078.1 26990653 1046616 4450396..4453959 1 NC_002947.3 identified by match to PFAM protein family HMM PF00034; aldehyde dehydrogenase 4453959 1046616 PP_3948 Pseudomonas putida KT2440 aldehyde dehydrogenase NP_746078.1 4450396 D 160488 CDS NP_746079.1 26990654 1046615 complement(4453963..4454601) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 4454601 1046615 PP_3949 Pseudomonas putida KT2440 TetR family transcriptional regulator NP_746079.1 4453963 R 160488 CDS NP_746080.1 26990655 1046614 complement(4454806..4456983) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00672; methyl-accepting chemotaxis transducer 4456983 1046614 PP_3950 Pseudomonas putida KT2440 methyl-accepting chemotaxis transducer NP_746080.1 4454806 R 160488 CDS NP_746081.1 26990656 1046613 4457362..4458057 1 NC_002947.3 similar to SP:Q01103, GB:X17405, SP:P10915, PID:1151009, and PID:34378; identified by sequence similarity; 3-oxoadipate CoA-transferase subunit A 4458057 pcaI 1046613 pcaI Pseudomonas putida KT2440 3-oxoadipate CoA-transferase subunit A NP_746081.1 4457362 D 160488 CDS NP_746082.1 26990657 1046612 4458066..4458707 1 NC_002947.3 similar to SP:Q01104, GB:M82962, SP:Q16819, and PID:535475; identified by sequence similarity; 3-oxoadipate CoA-transferase subunit B 4458707 pcaJ 1046612 pcaJ Pseudomonas putida KT2440 3-oxoadipate CoA-transferase subunit B NP_746082.1 4458066 D 160488 CDS NP_746083.1 26990658 1046611 4458975..4460429 1 NC_002947.3 identified by match to PFAM protein family HMM PF03631; TrkH family potassium uptake protein 4460429 1046611 PP_3953 Pseudomonas putida KT2440 TrkH family potassium uptake protein NP_746083.1 4458975 D 160488 CDS NP_746084.1 26990659 1046610 4460534..4461484 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01728; hypothetical protein 4461484 1046610 PP_3954 Pseudomonas putida KT2440 hypothetical protein NP_746084.1 4460534 D 160488 CDS NP_746085.1 26990660 1046609 4461512..4463539 1 NC_002947.3 similar to GP:9951883; identified by sequence similarity; transporter 4463539 1046609 PP_3955 Pseudomonas putida KT2440 transporter NP_746085.1 4461512 D 160488 CDS NP_746086.1 26990661 1046608 4463536..4463952 1 NC_002947.3 similar to GP:9951882, and GP:9951882; identified by sequence similarity; hypothetical protein 4463952 1046608 PP_3956 Pseudomonas putida KT2440 hypothetical protein NP_746086.1 4463536 D 160488 CDS NP_746087.1 26990662 1046606 complement(4463980..4465953) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02028; choline/carnitine/betaine transporter family protein 4465953 1046606 PP_3957 Pseudomonas putida KT2440 choline/carnitine/betaine transporter family protein NP_746087.1 4463980 R 160488 CDS NP_746088.1 26990663 1046605 4466257..4467618 1 NC_002947.3 similar to GB:M57506, GB:M57502, SP:P22362, PID:184506, and PID:339729; identified by sequence similarity; sodium-proton antiporter, NhaA family 4467618 1046605 PP_3958 Pseudomonas putida KT2440 sodium-proton antiporter, NhaA family NP_746088.1 4466257 D 160488 CDS NP_746089.1 26990664 1046604 4467755..4469116 1 NC_002947.3 identified by match to PFAM protein family HMM PF00654; voltage-gated chloride channel family protein 4469116 1046604 PP_3959 Pseudomonas putida KT2440 voltage-gated chloride channel family protein NP_746089.1 4467755 D 160488 CDS NP_746090.1 26990665 1046603 complement(4469218..4469823) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 4469823 1046603 PP_3960 Pseudomonas putida KT2440 TetR family transcriptional regulator NP_746090.1 4469218 R 160488 CDS NP_746091.1 26990666 1046602 complement(4469980..4471188) 1 NC_002947.3 similar to GP:9438231; identified by sequence similarity; major facilitator superfamily transporter 4471188 1046602 PP_3961 Pseudomonas putida KT2440 major facilitator superfamily transporter NP_746091.1 4469980 R 160488 CDS NP_746092.1 26990667 1046601 4471971..4472792 1 NC_002947.3 similar to GP:4105683; identified by sequence similarity; lipoprotein 4472792 1046601 PP_3962 Pseudomonas putida KT2440 lipoprotein NP_746092.1 4471971 D 160488 CDS NP_746093.1 26990668 1046600 4473459..4473785 1 NC_002947.3 similar to GP:1742048; identified by sequence similarity; hypothetical protein 4473785 1046600 PP_3963 Pseudomonas putida KT2440 hypothetical protein NP_746093.1 4473459 D 160488 CDS NP_746094.1 26990669 1046599 complement(4473999..4475534) 1 NC_002947.3 similar to GP:3414883, and GP:6009427; identified by sequence similarity; ISPpu14, transposase Orf3 4475534 1046599 PP_3964 Pseudomonas putida KT2440 ISPpu14, transposase Orf3 NP_746094.1 4473999 R 160488 CDS NP_746095.1 26990670 1046598 complement(4475598..4475933) 1 NC_002947.3 similar to GP:4928612, and GP:6009406; identified by sequence similarity; ISPpu14, transposase Orf2 4475933 1046598 PP_3965 Pseudomonas putida KT2440 ISPpu14, transposase Orf2 NP_746095.1 4475598 R 160488 CDS NP_746096.1 26990671 1046597 complement(4475930..4476250) 1 NC_002947.3 similar to GP:2773259, and GP:2773259; identified by sequence similarity; ISPpu14, transposase Orf1 4476250 1046597 PP_3966 Pseudomonas putida KT2440 ISPpu14, transposase Orf1 NP_746096.1 4475930 R 160488 CDS NP_746097.1 26990672 1046596 4476426..4476866 1 NC_002947.3 similar to GB:Z22595, PID:435521, and SP:P52090; identified by sequence similarity; MutT/nudix family protein 4476866 1046596 PP_3967 Pseudomonas putida KT2440 MutT/nudix family protein NP_746097.1 4476426 D 160488 CDS NP_746098.1 26990673 1046595 complement(4476872..4477990) 1 NC_002947.3 similar to GP:5566398; identified by sequence similarity; sensor histidine kinase 4477990 1046595 PP_3968 Pseudomonas putida KT2440 sensor histidine kinase NP_746098.1 4476872 R 160488 CDS NP_746099.1 26990674 1046594 4478138..4478500 1 NC_002947.3 similar to GP:9622952; identified by sequence similarity; response regulator 4478500 1046594 PP_3969 Pseudomonas putida KT2440 response regulator NP_746099.1 4478138 D 160488 CDS NP_746100.1 26990675 1046593 4478649..4479851 1 NC_002947.3 similar to GB:S45627, GB:S45629, GB:S45636, GB:S45637, GB:S45639, GB:S45640, GB:S45635, GB:M16594, GB:X65726, GB:X65727, GB:X65728, GB:X65729, GB:X65730, GB:X65731, GB:X65732, SP:P08263, SP:P09210, PID:306811, PID:825605, PID:825606, SP:P07176, PID:41360, PID:42257, GB:U00096, PID:1651333, and PID:1786962; identified by sequence similarity; molecular chaperone GroES 4479851 1046593 PP_3970 Pseudomonas putida KT2440 molecular chaperone GroES NP_746100.1 4478649 D 160488 CDS NP_746101.1 26990676 1046592 4479865..4480098 1 NC_002947.3 hypothetical protein 4480098 1046592 PP_3971 Pseudomonas putida KT2440 hypothetical protein NP_746101.1 4479865 D 160488 CDS NP_746102.1 26990677 1046591 4480131..4481456 1 NC_002947.3 similar to SP:P80046, and PID:1478267; identified by sequence similarity; short chain dehydrogenase 4481456 1046591 PP_3972 Pseudomonas putida KT2440 short chain dehydrogenase NP_746102.1 4480131 D 160488 CDS NP_746103.1 26990678 1046590 4481687..4481839 1 NC_002947.3 hypothetical protein 4481839 1046590 PP_3973 Pseudomonas putida KT2440 hypothetical protein NP_746103.1 4481687 D 160488 CDS NP_746104.1 26990679 1046589 4481994..4482980 1 NC_002947.3 similar to GP:6498264; identified by sequence similarity; LysR family transcriptional regulator 4482980 1046589 PP_3974 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_746104.1 4481994 D 160488 CDS NP_746105.1 26990680 1046588 complement(4483000..4483461) 1 NC_002947.3 similar to GP:7636027, and GP:7636027; identified by sequence similarity; hypothetical protein 4483461 1046588 PP_3975 Pseudomonas putida KT2440 hypothetical protein NP_746105.1 4483000 R 160488 CDS NP_746106.1 26990681 1046587 4483669..4484355 1 NC_002947.3 identified by match to PFAM protein family HMM PF00857; isochorismatase superfamily hydrolase 4484355 1046587 PP_3976 Pseudomonas putida KT2440 isochorismatase superfamily hydrolase NP_746106.1 4483669 D 160488 CDS NP_746107.1 26990682 1046586 4484824..4486125 1 NC_002947.3 hypothetical protein 4486125 1046586 PP_3977 Pseudomonas putida KT2440 hypothetical protein NP_746107.1 4484824 D 160488 CDS NP_746108.1 26990683 1046585 4486128..4486298 1 NC_002947.3 hypothetical protein 4486298 1046585 PP_3978 Pseudomonas putida KT2440 hypothetical protein NP_746108.1 4486128 D 160488 CDS NP_746109.1 26990684 1046584 4486395..4486715 1 NC_002947.3 similar to GP:2773259, and GP:2773259; identified by sequence similarity; ISPpu14, transposase Orf1 4486715 1046584 PP_3979 Pseudomonas putida KT2440 ISPpu14, transposase Orf1 NP_746109.1 4486395 D 160488 CDS NP_746110.1 26990685 1046583 4486712..4487047 1 NC_002947.3 similar to GP:4928612; identified by sequence similarity; ISPpu14, transposase Orf2 4487047 1046583 PP_3980 Pseudomonas putida KT2440 ISPpu14, transposase Orf2 NP_746110.1 4486712 D 160488 CDS NP_746111.1 26990686 1046582 4487111..4488646 1 NC_002947.3 similar to GP:3414883, and GP:6009427; identified by sequence similarity; ISPpu14, transposase Orf3 4488646 1046582 PP_3981 Pseudomonas putida KT2440 ISPpu14, transposase Orf3 NP_746111.1 4487111 D 160488 CDS NP_746112.1 26990687 1046581 complement(4489217..4491862) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00005; hypothetical protein 4491862 1046581 PP_3982 Pseudomonas putida KT2440 hypothetical protein NP_746112.1 4489217 R 160488 CDS NP_746113.1 26990688 1046580 4492117..4492899 1 NC_002947.3 hypothetical protein 4492899 1046580 PP_3983 Pseudomonas putida KT2440 hypothetical protein NP_746113.1 4492117 D 160488 CDS NP_746114.1 26990689 1046579 complement(4493378..4493638) 1 NC_002947.3 similar to SP:P12059, GB:X52093, SP:P12059, and GB:X52093; identified by sequence similarity; ISPpu13, transposase Orf3 4493638 1046579 PP_3984 Pseudomonas putida KT2440 ISPpu13, transposase Orf3 NP_746114.1 4493378 R 160488 CDS NP_746115.1 26990690 1046578 complement(4493707..4495239) 1 NC_002947.3 similar to GP:5824139, and GP:8037785; identified by sequence similarity; ISPpu13, transposase Orf2 4495239 1046578 PP_3985 Pseudomonas putida KT2440 ISPpu13, transposase Orf2 NP_746115.1 4493707 R 160488 CDS NP_746116.1 26990691 1046577 complement(4495258..4495614) 1 NC_002947.3 similar to GP:5824138, and GP:8037784; identified by sequence similarity; ISPpu13, transposase Orf1 4495614 1046577 PP_3986 Pseudomonas putida KT2440 ISPpu13, transposase Orf1 NP_746116.1 4495258 R 160488 CDS NP_746117.1 26990692 1046576 4495690..4496649 1 NC_002947.3 similar to GP:9107449; identified by sequence similarity; phage integrase site specific recombinase 4496649 1046576 PP_3987 Pseudomonas putida KT2440 phage integrase site specific recombinase NP_746117.1 4495690 D 160488 CDS NP_746118.1 26990693 1046575 complement(4497954..4500002) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02518; hypothetical protein 4500002 1046575 PP_3988 Pseudomonas putida KT2440 hypothetical protein NP_746118.1 4497954 R 160488 CDS NP_746119.1 26990694 1046574 complement(4500014..4501060) 1 NC_002947.3 similar to GB:M62420, GB:J04056, GB:X88010, SP:P16152, PID:179978, and PID:181037; identified by sequence similarity; DNA-cytosine methyltransferase 4501060 1046574 PP_3989 Pseudomonas putida KT2440 DNA-cytosine methyltransferase NP_746119.1 4500014 R 160488 CDS NP_746120.1 26990695 1046573 4501536..4502207 1 NC_002947.3 identified by match to PFAM protein family HMM PF04178; hypothetical protein 4502207 1046573 PP_3990 Pseudomonas putida KT2440 hypothetical protein NP_746120.1 4501536 D 160488 CDS NP_746121.1 26990696 1046572 4502208..4502333 1 NC_002947.3 hypothetical protein 4502333 1046572 PP_3991 Pseudomonas putida KT2440 hypothetical protein NP_746121.1 4502208 D 160488 CDS NP_746122.1 26990697 1046571 4502371..4503750 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00801; xanthine/uracil permease 4503750 1046571 PP_3992 Pseudomonas putida KT2440 xanthine/uracil permease NP_746122.1 4502371 D 160488 CDS NP_746123.1 26990698 1046570 4503848..4504240 1 NC_002947.3 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD 4504240 dsrE 1046570 dsrE Pseudomonas putida KT2440 sulfur transfer complex subunit TusD NP_746123.1 4503848 D 160488 CDS NP_746124.1 26990699 1046568 4504242..4504601 1 NC_002947.3 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC 4504601 1046568 PP_3994 Pseudomonas putida KT2440 sulfur relay protein TusC NP_746124.1 4504242 D 160488 CDS NP_746125.1 26990700 1046567 4504601..4504897 1 NC_002947.3 identified by match to PFAM protein family HMM PF04077; hypothetical protein 4504897 1046567 PP_3995 Pseudomonas putida KT2440 hypothetical protein NP_746125.1 4504601 D 160488 CDS NP_746126.1 26990701 1046566 4504894..4505229 1 NC_002947.3 similar to GP:9948673; identified by sequence similarity; hypothetical protein 4505229 1046566 PP_3996 Pseudomonas putida KT2440 hypothetical protein NP_746126.1 4504894 D 160488 CDS NP_746127.1 26990702 1046565 4505226..4506227 1 NC_002947.3 similar to GB:J05556, SP:P22894, and PID:180618; identified by sequence similarity; hypothetical protein 4506227 1046565 PP_3997 Pseudomonas putida KT2440 hypothetical protein NP_746127.1 4505226 D 160488 CDS NP_746128.1 26990703 1046564 4506304..4507281 1 NC_002947.3 identified by match to PFAM protein family HMM PF00043; glutathione S-transferase domain-containing protein 4507281 1046564 PP_3998 Pseudomonas putida KT2440 glutathione S-transferase domain-containing protein NP_746128.1 4506304 D 160488 CDS NP_746129.1 26990704 1046563 complement(4507388..4508779) 1 NC_002947.3 similar to GB:X51730, GB:M15716, SP:P06401, PID:189935, and PID:35652; identified by sequence similarity; uroporphyrin-III C-methyltransferase 4508779 cobA-2 1046563 cobA-2 Pseudomonas putida KT2440 uroporphyrin-III C-methyltransferase NP_746129.1 4507388 R 160488 CDS NP_746130.1 26990705 1046562 complement(4508780..4510060) 1 NC_002947.3 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 4510060 serS 1046562 serS Pseudomonas putida KT2440 seryl-tRNA synthetase NP_746130.1 4508780 R 160488 CDS NP_746131.1 26990706 1046561 complement(4510091..4510465) 1 NC_002947.3 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 4510465 crcB 1046561 crcB Pseudomonas putida KT2440 camphor resistance protein CrcB NP_746131.1 4510091 R 160488 CDS NP_746132.1 26990707 1046560 complement(4510462..4511787) 1 NC_002947.3 similar to GP:9948679; identified by sequence similarity; recombination factor protein RarA 4511787 1046560 PP_4002 Pseudomonas putida KT2440 recombination factor protein RarA NP_746132.1 4510462 R 160488 CDS NP_746133.1 26990708 1046559 complement(4511800..4512486) 1 NC_002947.3 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 4512486 lolA 1046559 lolA Pseudomonas putida KT2440 outer-membrane lipoprotein carrier protein NP_746133.1 4511800 R 160488 CDS NP_746134.1 26990709 1046558 complement(4512486..4514990) 1 NC_002947.3 similar to GP:4063380, GB:L07807, GB:L07810, GB:L07808, GB:L07809, SP:Q05193, PID:181849, and PID:181851; identified by sequence similarity; DNA translocase FtsK 4514990 ftsK 1046558 ftsK Pseudomonas putida KT2440 DNA translocase FtsK NP_746134.1 4512486 R 160488 CDS NP_746135.1 26990710 1046557 4515398..4516078 1 NC_002947.3 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 4516078 aat 1046557 aat Pseudomonas putida KT2440 leucyl/phenylalanyl-tRNA--protein transferase NP_746135.1 4515398 D 160488 CDS NP_746136.1 26990711 1046556 4516135..4516842 1 NC_002947.3 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 4516842 1046556 PP_4006 Pseudomonas putida KT2440 arginyl-tRNA-protein transferase NP_746136.1 4516135 D 160488 CDS NP_746137.1 26990712 1046554 4516944..4517162 1 NC_002947.3 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 4517162 infA 1046554 infA Pseudomonas putida KT2440 translation initiation factor IF-1 NP_746137.1 4516944 D 160488 CDS NP_746138.1 26990713 1046551 complement(4517248..4519518) 1 NC_002947.3 similar to GB:J03490, SP:P09622, PID:1339989, PID:181575, and PID:307137; identified by sequence similarity; ATP-dependent Clp protease ATP-binding subunit ClpA 4519518 clpA 1046551 clpA Pseudomonas putida KT2440 ATP-dependent Clp protease ATP-binding subunit ClpA NP_746138.1 4517248 R 160488 CDS NP_746139.1 26990714 1046550 complement(4519549..4519911) 1 NC_002947.3 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 4519911 clpS 1046550 clpS Pseudomonas putida KT2440 ATP-dependent Clp protease adaptor protein ClpS NP_746139.1 4519549 R 160488 CDS NP_746140.1 26990715 1046549 4520142..4520408 1 NC_002947.3 identified by match to PFAM protein family HMM PF00313; cold-shock protein CspD 4520408 cspD 1046549 cspD Pseudomonas putida KT2440 cold-shock protein CspD NP_746140.1 4520142 D 160488 CDS NP_746141.1 26990716 1046548 complement(4520480..4521736) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00183; isocitrate dehydrogenase 4521736 icd 1046548 icd Pseudomonas putida KT2440 isocitrate dehydrogenase NP_746141.1 4520480 R 160488 CDS NP_746142.1 26990717 1046547 4522151..4524376 1 NC_002947.3 identified by match to PFAM protein family HMM PF03971; isocitrate dehydrogenase 4524376 1046547 PP_4012 Pseudomonas putida KT2440 isocitrate dehydrogenase NP_746142.1 4522151 D 160488 CDS NP_746143.1 26990718 1046545 4524568..4525008 1 NC_002947.3 similar to SP:P27506, and PID:43908; identified by sequence similarity; NUDIX hydrolase 4525008 1046545 PP_4013 Pseudomonas putida KT2440 NUDIX hydrolase NP_746143.1 4524568 D 160488 CDS NP_746144.1 26990719 1046544 4525068..4526192 1 NC_002947.3 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 4526192 mnmA 1046544 mnmA Pseudomonas putida KT2440 tRNA-specific 2-thiouridylase MnmA NP_746144.1 4525068 D 160488 CDS NP_746145.1 26990720 1046543 4526189..4526815 1 NC_002947.3 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 4526815 1046543 PP_4015 Pseudomonas putida KT2440 hypothetical protein NP_746145.1 4526189 D 160488 CDS NP_746146.1 26990721 1046542 4526953..4528323 1 NC_002947.3 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 4528323 purB 1046542 purB Pseudomonas putida KT2440 adenylosuccinate lyase NP_746146.1 4526953 D 160488 CDS NP_746147.1 26990722 1046540 4528399..4529571 1 NC_002947.3 cupin 4529571 1046540 PP_4017 Pseudomonas putida KT2440 cupin NP_746147.1 4528399 D 160488 CDS NP_746148.1 26990723 1046539 4529564..4529992 1 NC_002947.3 identified by match to PFAM protein family HMM PF00583; acetyltransferase 4529992 1046539 PP_4018 Pseudomonas putida KT2440 acetyltransferase NP_746148.1 4529564 D 160488 CDS NP_746149.1 26990724 1046538 4530160..4532121 1 NC_002947.3 decatenates replicating daughter chromosomes; DNA topoisomerase III 4532121 topB 1046538 topB Pseudomonas putida KT2440 DNA topoisomerase III NP_746149.1 4530160 D 160488 CDS NP_746150.1 26990725 1046536 4532267..4533556 1 NC_002947.3 similar to GP:9951625; identified by sequence similarity; FAD dependent oxidoreductase 4533556 1046536 PP_4020 Pseudomonas putida KT2440 FAD dependent oxidoreductase NP_746150.1 4532267 D 160488 CDS NP_746151.1 26990726 1046534 4533729..4534559 1 NC_002947.3 similar to GB:U07989, SP:P01596, SP:P01602, SP:P01604, SP:P01834, PID:1335148, PID:1619960, PID:185945, PID:185947, PID:185949, PID:468243, PID:470602, PID:470608, PID:470612, PID:561696, PID:561705, PID:563650, PID:619427, PID:619601, PID:619602, PID:619613, PID:619615, PID:619616, PID:632988, PID:642582, PID:663000, PID:663001, PID:722576, PID:758085, PID:762937, PID:790811, PID:860994, PID:896278, GB:U07989, SP:P01596, SP:P01602, SP:P01604, SP:P01834, PID:1335148, PID:1619960, PID:185945, PID:185947, PID:185949, PID:468243, PID:470602, PID:470608, PID:470612, PID:561696, PID:561705, PID:563650, PID:619427, PID:619601, PID:619602, PID:619613, PID:619615, PID:619616, PID:632988, PID:642582, PID:663000, PID:663001, PID:722576, PID:758085, PID:762937, PID:790811, PID:860994, and PID:896278; identified by sequence similarity; alpha/beta hydrolase 4534559 est 1046534 est Pseudomonas putida KT2440 alpha/beta hydrolase NP_746151.1 4533729 D 160488 CDS NP_746152.1 26990727 1042064 4534679..4535470 1 NC_002947.3 hypothetical protein 4535470 1042064 PP_4022 Pseudomonas putida KT2440 hypothetical protein NP_746152.1 4534679 D 160488 CDS NP_746153.1 26990728 1042061 4536285..4536644 1 NC_002947.3 similar to GP:5824138, and GP:8572709; identified by sequence similarity; ISPpu15, transposase Orf1 4536644 1042061 PP_4024 Pseudomonas putida KT2440 ISPpu15, transposase Orf1 NP_746153.1 4536285 D 160488 CDS NP_746154.1 26990729 1042069 4536663..4538195 1 NC_002947.3 similar to GP:8037785, and GP:8037785; identified by sequence similarity; ISPpu15, transposase Orf2 4538195 1042069 PP_4025 Pseudomonas putida KT2440 ISPpu15, transposase Orf2 NP_746154.1 4536663 D 160488 CDS NP_746155.1 26990730 1042075 4538515..4539288 1 NC_002947.3 hypothetical protein 4539288 1042075 PP_4027 Pseudomonas putida KT2440 hypothetical protein NP_746155.1 4538515 D 160488 CDS NP_746156.1 26990731 1042063 complement(4539270..4539374) 1 NC_002947.3 hypothetical protein 4539374 1042063 PP_4028 Pseudomonas putida KT2440 hypothetical protein NP_746156.1 4539270 R 160488 CDS NP_746157.1 26990732 1042077 complement(4539451..4540281) 1 NC_002947.3 can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 4540281 nudC 1042077 nudC Pseudomonas putida KT2440 NADH pyrophosphatase NP_746157.1 4539451 R 160488 CDS NP_746158.1 26990733 1046269 complement(4540318..4541160) 1 NC_002947.3 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 4541160 1046269 PP_4030 Pseudomonas putida KT2440 enoyl-CoA hydratase NP_746158.1 4540318 R 160488 CDS NP_746159.1 26990734 1042065 4541281..4542783 1 NC_002947.3 involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 4542783 nhaB 1042065 nhaB Pseudomonas putida KT2440 sodium/proton antiporter NP_746159.1 4541281 D 160488 CDS NP_746160.1 26990735 1044123 4542930..4543475 1 NC_002947.3 outer membrane lipoprotein Blc 4543475 1044123 PP_4032 Pseudomonas putida KT2440 outer membrane lipoprotein Blc NP_746160.1 4542930 D 160488 CDS NP_746161.1 26990736 1043330 4543563..4544522 1 NC_002947.3 similar to GB:X14831, GB:J03858, GB:S71326, GB:M76741, GB:M76742, GB:M76743, GB:M76744, GB:D12502, GB:M72238, GB:D90311, GB:D90313, SP:P13688, PID:179435, PID:179437, PID:219499, and PID:219501; identified by sequence similarity; ribonuclease Z 4544522 1043330 PP_4033 Pseudomonas putida KT2440 ribonuclease Z NP_746161.1 4543563 D 160488 CDS NP_746162.1 26990737 1042080 complement(4544519..4545802) 1 NC_002947.3 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 4545802 1042080 PP_4034 Pseudomonas putida KT2440 allantoate amidohydrolase NP_746162.1 4544519 R 160488 CDS NP_746163.1 26990738 1045385 complement(4545852..4547342) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03596; NCS1 nucleoside transporter 4547342 1045385 PP_4035 Pseudomonas putida KT2440 NCS1 nucleoside transporter NP_746163.1 4545852 R 160488 CDS NP_746164.1 26990739 1042092 4549261..4550628 1 NC_002947.3 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 4550628 1042092 PP_4037 Pseudomonas putida KT2440 oxidoreductase NP_746164.1 4549261 D 160488 CDS NP_746165.1 26990740 1042076 4550629..4551903 1 NC_002947.3 catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase 4551903 1042076 PP_4038 Pseudomonas putida KT2440 dihydropyrimidine dehydrogenase NP_746165.1 4550629 D 160488 CDS NP_746166.1 26990741 1042096 complement(4552703..4553059) 1 NC_002947.3 similar to GP:2565356; identified by sequence similarity; glyoxalase/bleomycin resistance protein/dioxygenase 4553059 1042096 PP_4040 Pseudomonas putida KT2440 glyoxalase/bleomycin resistance protein/dioxygenase NP_746166.1 4552703 R 160488 CDS NP_746167.1 26990742 1042162 complement(4553126..4555006) 1 NC_002947.3 similar to GP:6117873, and GP:6117873; identified by sequence similarity; glycoside hydrolase 15-like protein 4555006 1042162 PP_4041 Pseudomonas putida KT2440 glycoside hydrolase 15-like protein NP_746167.1 4553126 R 160488 CDS NP_746168.1 26990743 1042100 complement(4554988..4556493) 1 NC_002947.3 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 4556493 zwf-2 1042100 zwf-2 Pseudomonas putida KT2440 glucose-6-phosphate 1-dehydrogenase NP_746168.1 4554988 R 160488 CDS NP_746169.1 26990744 1042095 complement(4556490..4557473) 1 NC_002947.3 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 4557473 gnd 1042095 gnd Pseudomonas putida KT2440 6-phosphogluconate dehydrogenase NP_746169.1 4556490 R 160488 CDS NP_746170.1 26990745 1042106 4557640..4557843 1 NC_002947.3 hypothetical protein 4557843 1042106 PP_4044 Pseudomonas putida KT2440 hypothetical protein NP_746170.1 4557640 D 160488 CDS NP_746171.1 26990746 1042110 complement(4557886..4558152) 1 NC_002947.3 hypothetical protein 4558152 1042110 PP_4045 Pseudomonas putida KT2440 hypothetical protein NP_746171.1 4557886 R 160488 CDS NP_746172.1 26990747 1042107 complement(4558198..4559160) 1 NC_002947.3 hypothetical protein 4559160 1042107 PP_4046 Pseudomonas putida KT2440 hypothetical protein NP_746172.1 4558198 R 160488 CDS NP_746173.1 26990748 1042102 complement(4559176..4560132) 1 NC_002947.3 hypothetical protein 4560132 1042102 PP_4047 Pseudomonas putida KT2440 hypothetical protein NP_746173.1 4559176 R 160488 CDS NP_746174.1 26990749 1042687 complement(4560142..4561665) 1 NC_002947.3 hypothetical protein 4561665 1042687 PP_4048 Pseudomonas putida KT2440 hypothetical protein NP_746174.1 4560142 R 160488 CDS NP_746175.1 26990750 1041595 complement(4561542..4563857) 1 NC_002947.3 similar to GP:2920640; identified by sequence similarity; vgrG protein 4563857 vgrG-3 1041595 vgrG-3 Pseudomonas putida KT2440 vgrG protein NP_746175.1 4561542 R 160488 CDS NP_746176.1 26990751 1042113 4564755..4566314 1 NC_002947.3 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 4566314 glgA 1042113 glgA Pseudomonas putida KT2440 glycogen synthase NP_746176.1 4564755 D 160488 CDS NP_746177.1 26990752 1042111 4566329..4568071 1 NC_002947.3 identified by match to PFAM protein family HMM PF02922; malto-oligosyltrehalose trehalohydrolase 4568071 1042111 PP_4051 Pseudomonas putida KT2440 malto-oligosyltrehalose trehalohydrolase NP_746177.1 4566329 D 160488 CDS NP_746178.1 26990753 1042127 4568068..4570137 1 NC_002947.3 similar to GB:X12597, GB:L13805, SP:P09429, PID:1435197, PID:32327, and PID:968888; identified by sequence similarity; 4-alpha-glucanotransferase 4570137 malQ 1042127 malQ Pseudomonas putida KT2440 4-alpha-glucanotransferase NP_746178.1 4568068 D 160488 CDS NP_746179.1 26990754 1042120 4570134..4572908 1 NC_002947.3 identified by match to PFAM protein family HMM PF00128; malto-oligosyltrehalose synthase 4572908 1042120 PP_4053 Pseudomonas putida KT2440 malto-oligosyltrehalose synthase NP_746179.1 4570134 D 160488 CDS NP_746180.1 26990755 1042129 4572905..4573189 1 NC_002947.3 hypothetical protein 4573189 1042129 PP_4054 Pseudomonas putida KT2440 hypothetical protein NP_746180.1 4572905 D 160488 CDS NP_746181.1 26990756 1042124 4573326..4575479 1 NC_002947.3 identified by match to PFAM protein family HMM PF02922; glycogen debranching protein GlgX 4575479 glgX 1042124 glgX Pseudomonas putida KT2440 glycogen debranching protein GlgX NP_746181.1 4573326 D 160488 CDS NP_746182.1 26990757 1042134 4575601..4576395 1 NC_002947.3 identified by match to PFAM protein family HMM PF03372; hypothetical protein 4576395 1042134 PP_4056 Pseudomonas putida KT2440 hypothetical protein NP_746182.1 4575601 D 160488 CDS NP_746183.1 26990758 1042122 4576619..4577788 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01414; outer membrane autotransporter 4577788 1042122 PP_4057 Pseudomonas putida KT2440 outer membrane autotransporter NP_746183.1 4576619 D 160488 CDS NP_746184.1 26990759 1044393 complement(4577897..4580107) 1 NC_002947.3 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 4580107 glgB 1044393 glgB Pseudomonas putida KT2440 glycogen branching protein NP_746184.1 4577897 R 160488 CDS NP_746185.1 26990760 1042130 complement(4580104..4583424) 1 NC_002947.3 similar to GP:1536814; identified by sequence similarity; trehalose synthase 4583424 1042130 PP_4059 Pseudomonas putida KT2440 trehalose synthase NP_746185.1 4580104 R 160488 CDS NP_746186.1 26990761 1042139 complement(4583595..4585580) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00128; alpha-amylase 4585580 1042139 PP_4060 Pseudomonas putida KT2440 alpha-amylase NP_746186.1 4583595 R 160488 CDS NP_746187.1 26990762 1042142 4585753..4585914 1 NC_002947.3 hypothetical protein 4585914 1042142 PP_4061 Pseudomonas putida KT2440 hypothetical protein NP_746187.1 4585753 D 160488 CDS NP_746188.1 26990763 1042141 complement(4585911..4586009) 1 NC_002947.3 hypothetical protein 4586009 1042141 PP_4062 Pseudomonas putida KT2440 hypothetical protein NP_746188.1 4585911 R 160488 CDS NP_746189.1 26990764 1042136 complement(4586129..4587811) 1 NC_002947.3 activates fatty acids by binding to coenzyme A; AMP-binding protein 4587811 1042136 PP_4063 Pseudomonas putida KT2440 AMP-binding protein NP_746189.1 4586129 R 160488 CDS NP_746190.1 26990765 1042152 4588022..4589296 1 NC_002947.3 similar to SP:P18812; identified by sequence similarity; acyl-CoA dehydrogenase 4589296 ivd 1042152 ivd Pseudomonas putida KT2440 acyl-CoA dehydrogenase NP_746190.1 4588022 D 160488 CDS NP_746191.1 26990766 1042156 4589316..4590923 1 NC_002947.3 similar to GP:10934059; identified by sequence similarity; propionyl-CoA carboxylase 4590923 1042156 PP_4065 Pseudomonas putida KT2440 propionyl-CoA carboxylase NP_746191.1 4589316 D 160488 CDS NP_746192.1 26990767 1041856 4590927..4591742 1 NC_002947.3 catalyzes the hydration of gamma-carboxygeranoyl-CoA to 3-hydroxy-gamma-carboxygeranoyl-CoA; gamma-carboxygeranoyl-CoA hydratase 4591742 1041856 PP_4066 Pseudomonas putida KT2440 gamma-carboxygeranoyl-CoA hydratase NP_746192.1 4590927 D 160488 CDS NP_746193.1 26990768 1042147 4591739..4593691 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00514; acetyl-CoA carboxylase, biotin carboxylase 4593691 1042147 PP_4067 Pseudomonas putida KT2440 acetyl-CoA carboxylase, biotin carboxylase NP_746193.1 4591739 D 160488 CDS NP_746194.1 26990769 1045706 complement(4593990..4594694) 1 NC_002947.3 similar to GP:1469215; identified by sequence similarity; Cro/CI family transcriptional regulator 4594694 1045706 PP_4068 Pseudomonas putida KT2440 Cro/CI family transcriptional regulator NP_746194.1 4593990 R 160488 CDS NP_746195.1 26990770 1042155 4594782..4595081 1 NC_002947.3 hypothetical protein 4595081 1042155 PP_4069 Pseudomonas putida KT2440 hypothetical protein NP_746195.1 4594782 D 160488 CDS NP_746196.1 26990771 1042166 4595530..4596045 1 NC_002947.3 hypothetical protein 4596045 1042166 PP_4070 Pseudomonas putida KT2440 hypothetical protein NP_746196.1 4595530 D 160488 CDS NP_746197.1 26990772 1042157 complement(4596179..4599805) 1 NC_002947.3 hypothetical protein 4599805 1042157 PP_4071 Pseudomonas putida KT2440 hypothetical protein NP_746197.1 4596179 R 160488 CDS NP_746198.1 26990773 1042170 complement(4599802..4601268) 1 NC_002947.3 hypothetical protein 4601268 1042170 PP_4072 Pseudomonas putida KT2440 hypothetical protein NP_746198.1 4599802 R 160488 CDS NP_746199.1 26990774 1041609 complement(4601256..4601888) 1 NC_002947.3 similar to GP:9657505; identified by sequence similarity; hypothetical protein 4601888 1041609 PP_4073 Pseudomonas putida KT2440 hypothetical protein NP_746199.1 4601256 R 160488 CDS NP_746200.1 26990775 1042165 4602163..4602666 1 NC_002947.3 hypothetical protein 4602666 1042165 PP_4074 Pseudomonas putida KT2440 hypothetical protein NP_746200.1 4602163 D 160488 CDS NP_746201.1 26990776 1042173 4604168..4604578 1 NC_002947.3 hypothetical protein 4604578 1042173 PP_4076 Pseudomonas putida KT2440 hypothetical protein NP_746201.1 4604168 D 160488 CDS NP_746202.1 26990777 1042174 4604582..4606348 1 NC_002947.3 hypothetical protein 4606348 1042174 PP_4077 Pseudomonas putida KT2440 hypothetical protein NP_746202.1 4604582 D 160488 CDS NP_746203.1 26990778 1042176 4606312..4607328 1 NC_002947.3 hypothetical protein 4607328 1042176 PP_4078 Pseudomonas putida KT2440 hypothetical protein NP_746203.1 4606312 D 160488 CDS NP_746204.1 26990779 1046066 4607325..4608122 1 NC_002947.3 similar to GP:9657500; identified by sequence similarity; hypothetical protein 4608122 1046066 PP_4079 Pseudomonas putida KT2440 hypothetical protein NP_746204.1 4607325 D 160488 CDS NP_746205.1 26990780 1042171 4608172..4609509 1 NC_002947.3 hypothetical protein 4609509 1042171 PP_4080 Pseudomonas putida KT2440 hypothetical protein NP_746205.1 4608172 D 160488 CDS NP_746206.1 26990781 1042180 4609454..4610386 1 NC_002947.3 hypothetical protein 4610386 1042180 PP_4081 Pseudomonas putida KT2440 hypothetical protein NP_746206.1 4609454 D 160488 CDS NP_746207.1 26990782 1042181 4610520..4611035 1 NC_002947.3 similar to GP:2920641; identified by sequence similarity; hcp protein 4611035 hcp-2 1042181 hcp-2 Pseudomonas putida KT2440 hcp protein NP_746207.1 4610520 D 160488 CDS NP_746208.1 26990783 1042186 4613142..4613573 1 NC_002947.3 hypothetical protein 4613573 1042186 PP_4084 Pseudomonas putida KT2440 hypothetical protein NP_746208.1 4613142 D 160488 CDS NP_746209.1 26990784 1042182 4613627..4618219 1 NC_002947.3 similar to GP:2920634; identified by sequence similarity; RHS family protein 4618219 1042182 PP_4085 Pseudomonas putida KT2440 RHS family protein NP_746209.1 4613627 D 160488 CDS NP_746210.1 26990785 1042191 complement(4619477..4620040) 1 NC_002947.3 hypothetical protein 4620040 1042191 PP_4086 Pseudomonas putida KT2440 hypothetical protein NP_746210.1 4619477 R 160488 CDS NP_746211.1 26990786 1042184 4620241..4620393 1 NC_002947.3 hypothetical protein 4620393 1042184 PP_4087 Pseudomonas putida KT2440 hypothetical protein NP_746211.1 4620241 D 160488 CDS NP_746212.1 26990787 1042205 complement(4625967..4627499) 1 NC_002947.3 similar to GP:8037785, and GP:8037785; identified by sequence similarity; ISPpu15, transposase Orf2 4627499 1042205 PP_4091 Pseudomonas putida KT2440 ISPpu15, transposase Orf2 NP_746212.1 4625967 R 160488 CDS NP_746213.1 26990788 1045296 complement(4627518..4627877) 1 NC_002947.3 similar to GP:5824138, and GP:8572709; identified by sequence similarity; ISPpu15, transposase Orf1 4627877 1045296 PP_4092 Pseudomonas putida KT2440 ISPpu15, transposase Orf1 NP_746213.1 4627518 R 160488 CDS NP_746214.1 26990789 1042198 4629737..4630222 1 NC_002947.3 similar to SP:P23761, PID:296728, PID:58350, SP:P23761, PID:296728, and PID:58350; identified by sequence similarity; hypothetical protein 4630222 1042198 PP_4094 Pseudomonas putida KT2440 hypothetical protein NP_746214.1 4629737 D 160488 CDS NP_746215.1 26990790 1042213 4631078..4631353 1 NC_002947.3 similar to GP:8247754, SP:P25897, GB:D10986, and PID:217130; identified by sequence similarity; hypothetical protein 4631353 1042213 PP_4095 Pseudomonas putida KT2440 hypothetical protein NP_746215.1 4631078 D 160488 CDS NP_746216.1 26990791 1042211 4631657..4632391 1 NC_002947.3 similar to GP:9946890; identified by sequence similarity; hypothetical protein 4632391 1042211 PP_4096 Pseudomonas putida KT2440 hypothetical protein NP_746216.1 4631657 D 160488 CDS NP_746217.1 26990792 1042207 complement(4632689..4633249) 1 NC_002947.3 similar to SP:P06978; identified by sequence similarity; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 4633249 pgsA 1042207 pgsA Pseudomonas putida KT2440 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase NP_746217.1 4632689 R 160488 CDS NP_746218.1 26990793 1042204 complement(4633283..4635106) 1 NC_002947.3 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 4635106 uvrC 1042204 uvrC Pseudomonas putida KT2440 excinuclease ABC subunit C NP_746218.1 4633283 R 160488 CDS NP_746219.1 26990794 1042216 complement(4635113..4635751) 1 NC_002947.3 similar to GP:3142729, GB:X51405, SP:P16870, and PID:29667; identified by sequence similarity; DNA-binding response regulator GacA 4635751 gacA 1042216 gacA Pseudomonas putida KT2440 DNA-binding response regulator GacA NP_746219.1 4635113 R 160488 CDS NP_746220.1 26990795 1042218 complement(4635815..4636204) 1 NC_002947.3 similar to SP:P21232, GB:M36726, SP:P21232, and GB:M36726; identified by sequence similarity; Cro/CI family transcriptional regulator 4636204 1042218 PP_4100 Pseudomonas putida KT2440 Cro/CI family transcriptional regulator NP_746220.1 4635815 R 160488 CDS NP_746221.1 26990796 1042209 complement(4636312..4636755) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00583; acetyltransferase 4636755 1042209 PP_4101 Pseudomonas putida KT2440 acetyltransferase NP_746221.1 4636312 R 160488 CDS NP_746222.1 26990797 1042232 complement(4636766..4637152) 1 NC_002947.3 hypothetical protein 4637152 1042232 PP_4102 Pseudomonas putida KT2440 hypothetical protein NP_746222.1 4636766 R 160488 CDS NP_746223.1 26990798 1042215 4637281..4638897 1 NC_002947.3 identified by match to PFAM protein family HMM PF01384; phosphate transporter 4638897 1042215 PP_4103 Pseudomonas putida KT2440 phosphate transporter NP_746223.1 4637281 D 160488 CDS NP_746224.1 26990799 1042226 complement(4639078..4639773) 1 NC_002947.3 similar to GB:M64983, GB:J00129, GB:M26877, GB:M26876, GB:J00131, GB:J00130, SP:P02675, PID:182430, PID:182435, PID:31401, PID:484509, PID:532595, GB:M64983, GB:J00129, GB:M26877, GB:M26876, GB:J00131, GB:J00130, SP:P02675, PID:182430, PID:182435, PID:31401, PID:484509, PID:532595, GB:M64983, GB:J00129, GB:M26877, GB:M26876, GB:J00131, GB:J00130, SP:P02675, PID:182430, PID:182435, PID:31401, PID:484509, PID:532595, GB:M64983, GB:J00129, GB:M26877, GB:M26876, GB:J00131, GB:J00130, SP:P02675, PID:182430, PID:182435, PID:31401, PID:484509, and PID:532595; identified by sequence similarity; glutathione S-transferase 4639773 1042226 PP_4104 Pseudomonas putida KT2440 glutathione S-transferase NP_746224.1 4639078 R 160488 CDS NP_746225.1 26990800 1042221 complement(4639861..4640358) 1 NC_002947.3 similar to GP:2815353, and GP:2815353; identified by sequence similarity; hypothetical protein 4640358 1042221 PP_4105 Pseudomonas putida KT2440 hypothetical protein NP_746225.1 4639861 R 160488 CDS NP_746226.1 26990801 1042234 complement(4640416..4641798) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00324; amino acid ABC transporter permease 4641798 gabP 1042234 gabP Pseudomonas putida KT2440 amino acid ABC transporter permease NP_746226.1 4640416 R 160488 CDS NP_746227.1 26990802 1042233 4642054..4642950 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 4642950 1042233 PP_4107 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_746227.1 4642054 D 160488 CDS NP_746228.1 26990803 1042236 4643130..4644380 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00700; class III aminotransferase 4644380 1042236 PP_4108 Pseudomonas putida KT2440 class III aminotransferase NP_746228.1 4643130 D 160488 CDS NP_746229.1 26990804 1042228 complement(4644384..4644686) 1 NC_002947.3 hypothetical protein 4644686 1042228 PP_4109 Pseudomonas putida KT2440 hypothetical protein NP_746229.1 4644384 R 160488 CDS NP_746230.1 26990805 1045195 complement(4644755..4645510) 1 NC_002947.3 hypothetical protein 4645510 1045195 PP_4110 Pseudomonas putida KT2440 hypothetical protein NP_746230.1 4644755 R 160488 CDS NP_746231.1 26990806 1042244 4645431..4647542 1 NC_002947.3 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 4647542 fusA 1042244 fusA Pseudomonas putida KT2440 elongation factor G NP_746231.1 4645431 D 160488 CDS NP_746232.1 26990807 1042241 complement(4649201..4650910) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00082; hypothetical protein 4650910 1042241 PP_4113 Pseudomonas putida KT2440 hypothetical protein NP_746232.1 4649201 R 160488 CDS NP_746233.1 26990808 1042256 complement(4650964..4652139) 1 NC_002947.3 hypothetical protein 4652139 1042256 PP_4114 Pseudomonas putida KT2440 hypothetical protein NP_746233.1 4650964 R 160488 CDS NP_746234.1 26990809 1041900 4652226..4653029 1 NC_002947.3 similar to GP:9948700; identified by sequence similarity; NolW domain-containing protein 4653029 1041900 PP_4115 Pseudomonas putida KT2440 NolW domain-containing protein NP_746234.1 4652226 D 160488 CDS NP_746235.1 26990810 1042253 4653520..4654845 1 NC_002947.3 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 4654845 aceA 1042253 aceA Pseudomonas putida KT2440 isocitrate lyase NP_746235.1 4653520 D 160488 CDS NP_746236.1 26990811 1046072 complement(4654903..4655085) 1 NC_002947.3 hypothetical protein 4655085 1046072 PP_4117 Pseudomonas putida KT2440 hypothetical protein NP_746236.1 4654903 R 160488 CDS NP_746237.1 26990812 1042264 4655103..4655798 1 NC_002947.3 similar to GP:9658122; identified by sequence similarity; hypothetical protein 4655798 1042264 PP_4118 Pseudomonas putida KT2440 hypothetical protein NP_746237.1 4655103 D 160488 CDS NP_746238.1 26990813 1041621 4656182..4656595 1 NC_002947.3 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 4656595 nuoA 1041621 nuoA Pseudomonas putida KT2440 NADH dehydrogenase subunit A NP_746238.1 4656182 D 160488 CDS NP_746239.1 26990814 1042262 4656605..4657282 1 NC_002947.3 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 4657282 nuoB 1042262 nuoB Pseudomonas putida KT2440 NADH dehydrogenase subunit B NP_746239.1 4656605 D 160488 CDS NP_746240.1 26990815 1042260 4657362..4659143 1 NC_002947.3 NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D 4659143 nuoCD 1042260 nuoCD Pseudomonas putida KT2440 bifunctional NADH:ubiquinone oxidoreductase subunit C/D NP_746240.1 4657362 D 160488 CDS NP_746241.1 26990816 1042274 4659146..4659643 1 NC_002947.3 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 4659643 nuoE 1042274 nuoE Pseudomonas putida KT2440 NADH dehydrogenase subunit E NP_746241.1 4659146 D 160488 CDS NP_746242.1 26990817 1045401 4659640..4661001 1 NC_002947.3 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 4661001 nuoF 1045401 nuoF Pseudomonas putida KT2440 NADH dehydrogenase I subunit F NP_746242.1 4659640 D 160488 CDS NP_746243.1 26990818 1042269 4661134..4663848 1 NC_002947.3 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 4663848 nuoG 1042269 nuoG Pseudomonas putida KT2440 NADH dehydrogenase subunit G NP_746243.1 4661134 D 160488 CDS NP_746244.1 26990819 1042266 4663845..4664852 1 NC_002947.3 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 4664852 nuoH 1042266 nuoH Pseudomonas putida KT2440 NADH dehydrogenase subunit H NP_746244.1 4663845 D 160488 CDS NP_746245.1 26990820 1042277 4664864..4665412 1 NC_002947.3 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 4665412 nuoI 1042277 nuoI Pseudomonas putida KT2440 NADH dehydrogenase subunit I NP_746245.1 4664864 D 160488 CDS NP_746246.1 26990821 1042270 4665423..4665923 1 NC_002947.3 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 4665923 nuoJ 1042270 nuoJ Pseudomonas putida KT2440 NADH dehydrogenase subunit J NP_746246.1 4665423 D 160488 CDS NP_746247.1 26990822 1042272 4665927..4666235 1 NC_002947.3 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 4666235 nouK 1042272 nouK Pseudomonas putida KT2440 NADH dehydrogenase subunit K NP_746247.1 4665927 D 160488 CDS NP_746248.1 26990823 1042283 4666232..4668085 1 NC_002947.3 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 4668085 nuoL 1042283 nuoL Pseudomonas putida KT2440 NADH dehydrogenase subunit L NP_746248.1 4666232 D 160488 CDS NP_746249.1 26990824 1042273 4668126..4669658 1 NC_002947.3 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 4669658 nuoM 1042273 nuoM Pseudomonas putida KT2440 NADH dehydrogenase subunit M NP_746249.1 4668126 D 160488 CDS NP_746250.1 26990825 1042285 4669666..4671135 1 NC_002947.3 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 4671135 nuoN 1042285 nuoN Pseudomonas putida KT2440 NADH dehydrogenase subunit N NP_746250.1 4669666 D 160488 CDS NP_746251.1 26990826 1042280 complement(4671226..4671489) 1 NC_002947.3 similar to GP:4063808, and GP:4063808; identified by sequence similarity; hypothetical protein 4671489 1042280 PP_4132 Pseudomonas putida KT2440 hypothetical protein NP_746251.1 4671226 R 160488 CDS NP_746252.1 26990827 1042295 4671669..4672046 1 NC_002947.3 similar to GP:14804; identified by sequence similarity; transcriptional regulator-like protein 4672046 1042295 PP_4133 Pseudomonas putida KT2440 transcriptional regulator-like protein NP_746252.1 4671669 D 160488 CDS NP_746253.1 26990828 1042294 complement(4672043..4672405) 1 NC_002947.3 similar to GP:4063781, and GP:4063781; identified by sequence similarity; hypothetical protein 4672405 1042294 PP_4134 Pseudomonas putida KT2440 hypothetical protein NP_746253.1 4672043 R 160488 CDS NP_746254.1 26990829 1042292 complement(4672398..4672745) 1 NC_002947.3 hypothetical protein 4672745 1042292 PP_4135 Pseudomonas putida KT2440 hypothetical protein NP_746254.1 4672398 R 160488 CDS NP_746255.1 26990830 1042291 complement(4672757..4673005) 1 NC_002947.3 similar to GB:M19961, GB:M59250, SP:P10606, PID:1679628, PID:180937, and PID:180941; identified by sequence similarity; LuxR family transcriptional regulator 4673005 1042291 PP_4136 Pseudomonas putida KT2440 LuxR family transcriptional regulator NP_746255.1 4672757 R 160488 CDS NP_746256.1 26990831 1042629 4673226..4675298 1 NC_002947.3 similar to GP:3925407, SP:P00960, GB:J01622, PID:146222, PID:146225, PID:466698, GB:U00096, and PID:1789983; identified by sequence similarity; outer membrane siderophore receptor 4675298 1042629 PP_4137 Pseudomonas putida KT2440 outer membrane siderophore receptor NP_746256.1 4673226 D 160488 CDS NP_746257.1 26990832 1042299 complement(4675402..4675962) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03358; NADPH-dependent FMN reductase 4675962 1042299 PP_4138 Pseudomonas putida KT2440 NADPH-dependent FMN reductase NP_746257.1 4675402 R 160488 CDS NP_746258.1 26990833 1042074 4676119..4676337 1 NC_002947.3 hypothetical protein 4676337 1042074 PP_4139 Pseudomonas putida KT2440 hypothetical protein NP_746258.1 4676119 D 160488 CDS NP_746259.1 26990834 1045677 complement(4678699..4679457) 1 NC_002947.3 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 4679457 dnaQ 1045677 dnaQ Pseudomonas putida KT2440 DNA polymerase III subunit epsilon NP_746259.1 4678699 R 160488 CDS NP_746260.1 26990835 1045672 complement(4679508..4679954) 1 NC_002947.3 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 4679954 rnhA 1045672 rnhA Pseudomonas putida KT2440 ribonuclease H NP_746260.1 4679508 R 160488 CDS NP_746261.1 26990836 1042306 complement(4679970..4680770) 1 NC_002947.3 similar to GP:9947799; identified by sequence similarity; hypothetical protein 4680770 1042306 PP_4143 Pseudomonas putida KT2440 hypothetical protein NP_746261.1 4679970 R 160488 CDS NP_746262.1 26990837 1042304 4680829..4681608 1 NC_002947.3 similar to GB:M88458, SP:P33947, and PID:31218; identified by sequence similarity; hydroxyacylglutathione hydrolase 4681608 gloB 1042304 gloB Pseudomonas putida KT2440 hydroxyacylglutathione hydrolase NP_746262.1 4680829 D 160488 CDS NP_746263.1 26990838 1042314 4681709..4683139 1 NC_002947.3 identified by match to PFAM protein family HMM PF01464; lytic murein transglycosylase D 4683139 mltD 1042314 mltD Pseudomonas putida KT2440 lytic murein transglycosylase D NP_746263.1 4681709 D 160488 CDS NP_746264.1 26990839 1042310 4683360..4685189 1 NC_002947.3 identified by match to PFAM protein family HMM PF00496; peptide ABC transporter substrate-binding protein 4685189 1042310 PP_4146 Pseudomonas putida KT2440 peptide ABC transporter substrate-binding protein NP_746264.1 4683360 D 160488 CDS NP_746265.1 26990840 1042316 4685186..4687021 1 NC_002947.3 identified by match to PFAM protein family HMM PF00496; peptide ABC transporter substrate-binding protein 4687021 1042316 PP_4147 Pseudomonas putida KT2440 peptide ABC transporter substrate-binding protein NP_746265.1 4685186 D 160488 CDS NP_746266.1 26990841 1042320 4687023..4688096 1 NC_002947.3 identified by match to PFAM protein family HMM PF03626; binding-protein-dependent transport system inner membrane protein 4688096 1042320 PP_4148 Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_746266.1 4687023 D 160488 CDS NP_746267.1 26990842 1042308 4688098..4689117 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01726; binding-protein-dependent transport system inner membrane protein 4689117 1042308 PP_4149 Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_746267.1 4688098 D 160488 CDS NP_746268.1 26990843 1042321 4689119..4690723 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01727; peptide ABC transporter ATP-binding protein 4690723 1042321 PP_4150 Pseudomonas putida KT2440 peptide ABC transporter ATP-binding protein NP_746268.1 4689119 D 160488 CDS NP_746269.1 26990844 1042318 4690865..4691338 1 NC_002947.3 similar to GP:3378297; identified by sequence similarity; excisionase 4691338 1042318 PP_4151 Pseudomonas putida KT2440 excisionase NP_746269.1 4690865 D 160488 CDS NP_746270.1 26990845 1042326 4691335..4691910 1 NC_002947.3 similar to GP:3378296, and GP:3378296; identified by sequence similarity; hypothetical protein 4691910 1042326 PP_4152 Pseudomonas putida KT2440 hypothetical protein NP_746270.1 4691335 D 160488 CDS NP_746271.1 26990846 1042312 complement(4692034..4692240) 1 NC_002947.3 hypothetical protein 4692240 1042312 PP_4153 Pseudomonas putida KT2440 hypothetical protein NP_746271.1 4692034 R 160488 CDS NP_746272.1 26990847 1042319 4692322..4695054 1 NC_002947.3 similar to GP:6403506; identified by sequence similarity; hypothetical protein 4695054 1042319 PP_4154 Pseudomonas putida KT2440 hypothetical protein NP_746272.1 4692322 D 160488 CDS NP_746273.1 26990848 1042327 complement(4695058..4696281) 1 NC_002947.3 similar to GP:6946683; identified by sequence similarity; hypothetical protein 4696281 1042327 PP_4155 Pseudomonas putida KT2440 hypothetical protein NP_746273.1 4695058 R 160488 CDS NP_746274.1 26990849 1042332 4696372..4697277 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 4697277 1042332 PP_4156 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_746274.1 4696372 D 160488 CDS NP_746275.1 26990850 1042343 complement(4697339..4698034) 1 NC_002947.3 similar to GP:9947605; identified by sequence similarity; winged helix family two component transcriptional regulator 4698034 kdpE 1042343 kdpE Pseudomonas putida KT2440 winged helix family two component transcriptional regulator NP_746275.1 4697339 R 160488 CDS NP_746276.1 26990851 1042335 complement(4698031..4700685) 1 NC_002947.3 similar to GP:9947604, and GP:9947604; identified by sequence similarity; osmosensitive K+ channel signal transduction histidine kinase 4700685 kdpD 1042335 kdpD Pseudomonas putida KT2440 osmosensitive K+ channel signal transduction histidine kinase NP_746276.1 4698031 R 160488 CDS NP_746277.1 26990852 1042354 complement(4700835..4701392) 1 NC_002947.3 One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C 4701392 kdpC 1042354 kdpC Pseudomonas putida KT2440 potassium-transporting ATPase subunit C NP_746277.1 4700835 R 160488 CDS NP_746278.1 26990853 1042353 complement(4703468..4705162) 1 NC_002947.3 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 4705162 kdpA 1042353 kdpA Pseudomonas putida KT2440 potassium-transporting ATPase subunit A NP_746278.1 4703468 R 160488 CDS NP_746279.1 26990854 1042355 complement(4705438..4706490) 1 NC_002947.3 similar to GP:9947592; identified by sequence similarity; hypothetical protein 4706490 1042355 PP_4162 Pseudomonas putida KT2440 hypothetical protein NP_746279.1 4705438 R 160488 CDS NP_746280.1 26990855 1042348 complement(4706503..4707297) 1 NC_002947.3 similar to GP:9947591; identified by sequence similarity; hypothetical protein 4707297 1042348 PP_4163 Pseudomonas putida KT2440 hypothetical protein NP_746280.1 4706503 R 160488 CDS NP_746281.1 26990856 1042361 complement(4707407..4708261) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01738; alpha/beta hydrolase 4708261 1042361 PP_4164 Pseudomonas putida KT2440 alpha/beta hydrolase NP_746281.1 4707407 R 160488 CDS NP_746282.1 26990857 1041592 complement(4708258..4709121) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01738; hypothetical protein 4709121 1041592 PP_4165 Pseudomonas putida KT2440 hypothetical protein NP_746282.1 4708258 R 160488 CDS NP_746283.1 26990858 1042360 complement(4709139..4709513) 1 NC_002947.3 hypothetical protein 4709513 1042360 PP_4166 Pseudomonas putida KT2440 hypothetical protein NP_746283.1 4709139 R 160488 CDS NP_746284.1 26990859 1042359 complement(4709676..4710134) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00249; phosphohistidine phosphatase SixA 4710134 sixA 1042359 sixA Pseudomonas putida KT2440 phosphohistidine phosphatase SixA NP_746284.1 4709676 R 160488 CDS NP_746285.1 26990860 1042373 complement(4710131..4710478) 1 NC_002947.3 similar to GP:9947581, and GP:9947581; identified by sequence similarity; hypothetical protein 4710478 1042373 PP_4168 Pseudomonas putida KT2440 hypothetical protein NP_746285.1 4710131 R 160488 CDS NP_746286.1 26990861 1045902 complement(4710515..4711540) 1 NC_002947.3 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 4711540 gpsA 1045902 gpsA Pseudomonas putida KT2440 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase NP_746286.1 4710515 R 160488 CDS NP_746287.1 26990862 1042375 complement(4711599..4711703) 1 NC_002947.3 hypothetical protein 4711703 1042375 PP_4170 Pseudomonas putida KT2440 hypothetical protein NP_746287.1 4711599 R 160488 CDS NP_746288.1 26990863 1042364 4711768..4713882 1 NC_002947.3 similar to GP:9947579; identified by sequence similarity; hypothetical protein 4713882 1042364 PP_4171 Pseudomonas putida KT2440 hypothetical protein NP_746288.1 4711768 D 160488 CDS NP_746289.1 26990864 1042384 4713882..4714772 1 NC_002947.3 hypothetical protein 4714772 1042384 PP_4172 Pseudomonas putida KT2440 hypothetical protein NP_746289.1 4713882 D 160488 CDS NP_746290.1 26990865 1042372 4714769..4716700 1 NC_002947.3 identified by match to PFAM protein family HMM PF02518; integral membrane sensor hybrid histidine kinase 4716700 1042372 PP_4173 Pseudomonas putida KT2440 integral membrane sensor hybrid histidine kinase NP_746290.1 4714769 D 160488 CDS NP_746291.1 26990866 1042381 4716908..4717423 1 NC_002947.3 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 4717423 fabA 1042381 fabA Pseudomonas putida KT2440 3-hydroxydecanoyl-ACP dehydratase NP_746291.1 4716908 D 160488 CDS NP_746292.1 26990867 1042370 4717435..4718655 1 NC_002947.3 FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 4718655 fabB 1042370 fabB Pseudomonas putida KT2440 3-oxoacyl-ACP synthase NP_746292.1 4717435 D 160488 CDS NP_746293.1 26990868 1042382 complement(4718786..4719793) 1 NC_002947.3 similar to GP:9845030; identified by sequence similarity; amidohydrolase 4719793 1042382 PP_4176 Pseudomonas putida KT2440 amidohydrolase NP_746293.1 4718786 R 160488 CDS NP_746294.1 26990869 1042386 4719893..4720774 1 NC_002947.3 similar to GP:4521959; identified by sequence similarity; pirin 4720774 1042386 PP_4177 Pseudomonas putida KT2440 pirin NP_746294.1 4719893 D 160488 CDS NP_746295.1 26990870 1042374 complement(4720869..4721594) 1 NC_002947.3 similar to GB:M14949, GB:M14948, SP:P10301, and PID:190936; identified by sequence similarity; dienelactone hydrolase 4721594 1042374 PP_4178 Pseudomonas putida KT2440 dienelactone hydrolase NP_746295.1 4720869 R 160488 CDS NP_746296.1 26990871 1042393 complement(4721658..4723562) 1 NC_002947.3 molecular chaperone; heat shock protein 90 4723562 htpG 1042393 htpG Pseudomonas putida KT2440 heat shock protein 90 NP_746296.1 4721658 R 160488 CDS NP_746297.1 26990872 1042397 complement(4723632..4724114) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00369; thioesterase 4724114 1042397 PP_4180 Pseudomonas putida KT2440 thioesterase NP_746297.1 4723632 R 160488 CDS NP_746298.1 26990873 1042388 complement(4724111..4724587) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00369; thioesterase 4724587 1042388 PP_4181 Pseudomonas putida KT2440 thioesterase NP_746298.1 4724111 R 160488 CDS NP_746299.1 26990874 1041915 complement(4724712..4725095) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01925; hypothetical protein 4725095 1041915 PP_4182 Pseudomonas putida KT2440 hypothetical protein NP_746299.1 4724712 R 160488 CDS NP_746300.1 26990875 1042394 complement(4725082..4725831) 1 NC_002947.3 similar to GP:9947555, and GP:9947555; identified by sequence similarity; hypothetical protein 4725831 1042394 PP_4183 Pseudomonas putida KT2440 hypothetical protein NP_746300.1 4725082 R 160488 CDS NP_746301.1 26990876 1042407 complement(4726067..4727380) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04138; branched-chain amino acid ABC transporter 4727380 braZ 1042407 braZ Pseudomonas putida KT2440 branched-chain amino acid ABC transporter NP_746301.1 4726067 R 160488 CDS NP_746302.1 26990877 1042406 complement(4727784..4728668) 1 NC_002947.3 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 4728668 sucD 1042406 sucD Pseudomonas putida KT2440 succinyl-CoA synthetase subunit alpha NP_746302.1 4727784 R 160488 CDS NP_746303.1 26990878 1042414 complement(4728668..4729834) 1 NC_002947.3 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 4729834 sucC 1042414 sucC Pseudomonas putida KT2440 succinyl-CoA synthetase subunit beta NP_746303.1 4728668 R 160488 CDS NP_746304.1 26990879 1042391 complement(4730006..4731442) 1 NC_002947.3 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 4731442 lpdG 1042391 lpdG Pseudomonas putida KT2440 dihydrolipoamide dehydrogenase NP_746304.1 4730006 R 160488 CDS NP_746305.1 26990880 1042423 complement(4731536..4732759) 1 NC_002947.3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 4732759 kgdB 1042423 kgdB Pseudomonas putida KT2440 dihydrolipoamide succinyltransferase NP_746305.1 4731536 R 160488 CDS NP_746306.1 26990881 1042413 complement(4732802..4735633) 1 NC_002947.3 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 4735633 sucA 1042413 sucA Pseudomonas putida KT2440 2-oxoglutarate dehydrogenase E1 NP_746306.1 4732802 R 160488 CDS NP_746307.1 26990882 1042396 complement(4735880..4736584) 1 NC_002947.3 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 4736584 sdhB 1042396 sdhB Pseudomonas putida KT2440 succinate dehydrogenase iron-sulfur subunit NP_746307.1 4735880 R 160488 CDS NP_746308.1 26990883 1042421 complement(4736596..4738368) 1 NC_002947.3 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 4738368 sdhA 1042421 sdhA Pseudomonas putida KT2440 succinate dehydrogenase flavoprotein subunit NP_746308.1 4736596 R 160488 CDS NP_746309.1 26990884 1042613 complement(4738372..4738740) 1 NC_002947.3 similar to GB:Z11585, and PID:29936; identified by sequence similarity; succinate dehydrogenase, hydrophobic membrane anchor protein 4738740 sdhD 1042613 sdhD Pseudomonas putida KT2440 succinate dehydrogenase, hydrophobic membrane anchor protein NP_746309.1 4738372 R 160488 CDS NP_746310.1 26990885 1042426 complement(4738734..4739120) 1 NC_002947.3 similar to GB:X63597, GB:M22616, SP:P14410, PID:338090, and PID:36645; identified by sequence similarity; succinate dehydrogenase, cytochrome b556 subunit 4739120 sdhC 1042426 sdhC Pseudomonas putida KT2440 succinate dehydrogenase, cytochrome b556 subunit NP_746310.1 4738734 R 160488 CDS NP_746311.1 26990886 1042422 4739473..4740762 1 NC_002947.3 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 4740762 gltA 1042422 gltA Pseudomonas putida KT2440 type II citrate synthase NP_746311.1 4739473 D 160488 CDS NP_746312.1 26990887 1042433 complement(4741516..4741770) 1 NC_002947.3 similar to SP:P58040; identified by sequence similarity; hypothetical protein 4741770 1042433 PP_4195 Pseudomonas putida KT2440 hypothetical protein NP_746312.1 4741516 R 160488 CDS NP_746313.1 26990888 1045698 complement(4741900..4742334) 1 NC_002947.3 similar to GP:9948985; identified by sequence similarity; hypothetical protein 4742334 1045698 PP_4196 Pseudomonas putida KT2440 hypothetical protein NP_746313.1 4741900 R 160488 CDS NP_746314.1 26990889 1043480 complement(4742399..4743991) 1 NC_002947.3 similar to GP:9948989; identified by sequence similarity; GntR family transcriptional regulator 4743991 1043480 PP_4197 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_746314.1 4742399 R 160488 CDS NP_746315.1 26990890 1044900 complement(4744013..4744825) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00691; OmpA/MotB domain-containing protein 4744825 1044900 PP_4198 Pseudomonas putida KT2440 OmpA/MotB domain-containing protein NP_746315.1 4744013 R 160488 CDS NP_746316.1 26990891 1042428 complement(4744822..4745175) 1 NC_002947.3 similar to GP:9948993; identified by sequence similarity; lipoprotein 4745175 1042428 PP_4199 Pseudomonas putida KT2440 lipoprotein NP_746316.1 4744822 R 160488 CDS NP_746317.1 26990892 1042442 complement(4745185..4746006) 1 NC_002947.3 similar to GP:9948994; identified by sequence similarity; hypothetical protein 4746006 1042442 PP_4200 Pseudomonas putida KT2440 hypothetical protein NP_746317.1 4745185 R 160488 CDS NP_746318.1 26990893 1042459 complement(4746082..4747011) 1 NC_002947.3 similar to SP:P38974; identified by sequence similarity; electron transfer flavoprotein subunit alpha 4747011 1042459 PP_4201 Pseudomonas putida KT2440 electron transfer flavoprotein subunit alpha NP_746318.1 4746082 R 160488 CDS NP_746319.1 26990894 1042448 complement(4747012..4747761) 1 NC_002947.3 similar to GB:D90359, GB:M73442, GB:M73444, GB:X07024, SP:P21675, and PID:29733; identified by sequence similarity; electron transfer flavoprotein subunit beta 4747761 1042448 PP_4202 Pseudomonas putida KT2440 electron transfer flavoprotein subunit beta NP_746319.1 4747012 R 160488 CDS NP_746320.1 26990895 1042462 4748297..4749979 1 NC_002947.3 identified by match to PFAM protein family HMM PF03545; electron-transferring-flavoprotein dehydrogenase 4749979 1042462 PP_4203 Pseudomonas putida KT2440 electron-transferring-flavoprotein dehydrogenase NP_746320.1 4748297 D 160488 CDS NP_746321.1 26990896 1045241 complement(4750051..4750452) 1 NC_002947.3 similar to GP:4186112; identified by sequence similarity; Cro/CI family transcriptional regulator 4750452 1045241 PP_4204 Pseudomonas putida KT2440 Cro/CI family transcriptional regulator NP_746321.1 4750051 R 160488 CDS NP_746322.1 26990897 1042465 complement(4750455..4750751) 1 NC_002947.3 similar to GP:4186111, and GP:4186111; identified by sequence similarity; hypothetical protein 4750751 1042465 PP_4205 Pseudomonas putida KT2440 hypothetical protein NP_746322.1 4750455 R 160488 CDS NP_746323.1 26990898 1042492 complement(4750846..4752171) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00883; major facilitator family transporter 4752171 1042492 PP_4206 Pseudomonas putida KT2440 major facilitator family transporter NP_746323.1 4750846 R 160488 CDS NP_746324.1 26990899 1045678 complement(4752244..4752723) 1 NC_002947.3 hypothetical protein 4752723 1045678 PP_4207 Pseudomonas putida KT2440 hypothetical protein NP_746324.1 4752244 R 160488 CDS NP_746325.1 26990900 1042476 complement(4752892..4753368) 1 NC_002947.3 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas aeruginosa this extracytoplasmic function sigma factor may be involved in the transcription of the ferric pyoverdine receptor gene, fpvA.; RNA polymerase sigma factor 4753368 1042476 PP_4208 Pseudomonas putida KT2440 RNA polymerase sigma factor NP_746325.1 4752892 R 160488 CDS NP_746326.1 26990901 1042499 4753581..4754759 1 NC_002947.3 similar to GP:10764643; identified by sequence similarity; RND family efflux transporter MFP subunit 4754759 1042499 PP_4209 Pseudomonas putida KT2440 RND family efflux transporter MFP subunit NP_746326.1 4753581 D 160488 CDS NP_746327.1 26990902 1042503 4754760..4756724 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01740; ABC transporter ATP-binding protein 4756724 1042503 PP_4210 Pseudomonas putida KT2440 ABC transporter ATP-binding protein NP_746327.1 4754760 D 160488 CDS NP_746328.1 26990903 1045923 4756728..4758140 1 NC_002947.3 identified by match to PFAM protein family HMM PF02321; RND efflux transporter 4758140 1045923 PP_4211 Pseudomonas putida KT2440 RND efflux transporter NP_746328.1 4756728 D 160488 CDS NP_746329.1 26990904 1042521 complement(4758161..4759783) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01409; hypothetical protein 4759783 1042521 PP_4212 Pseudomonas putida KT2440 hypothetical protein NP_746329.1 4758161 R 160488 CDS NP_746330.1 26990905 1042502 4759939..4761327 1 NC_002947.3 identified by match to PFAM protein family HMM PF01244; dipeptidase 4761327 1042502 PP_4213 Pseudomonas putida KT2440 dipeptidase NP_746330.1 4759939 D 160488 CDS NP_746331.1 26990906 1042524 4761342..4762628 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01409; class V aminotransferase 4762628 1042524 PP_4214 Pseudomonas putida KT2440 class V aminotransferase NP_746331.1 4761342 D 160488 CDS NP_746332.1 26990907 1042529 4762663..4763568 1 NC_002947.3 identified by match to PFAM protein family HMM PF03781; hypothetical protein 4763568 1042529 PP_4215 Pseudomonas putida KT2440 hypothetical protein NP_746332.1 4762663 D 160488 CDS NP_746333.1 26990908 1042520 4763603..4765261 1 NC_002947.3 similar to GB:X06325, SP:P09002, and PID:1333690; identified by sequence similarity; cyclic peptide transporter 4765261 pvdE 1042520 pvdE Pseudomonas putida KT2440 cyclic peptide transporter NP_746333.1 4763603 D 160488 CDS NP_746334.1 26990909 1042530 4765348..4767786 1 NC_002947.3 similar to GB:M29874, GB:M29873, SP:P20813, and PID:181294; identified by sequence similarity; outer membrane ferripyoverdine receptor 4767786 fpvA 1042530 fpvA Pseudomonas putida KT2440 outer membrane ferripyoverdine receptor NP_746334.1 4765348 D 160488 CDS NP_746335.1 26990910 1042532 complement(4767855..4768811) 1 NC_002947.3 similar to GB:U08997, GB:X66310, GB:X53144, GB:X53147, SP:P00367, SP:P49448, PID:31815, PID:478988, and PID:579924; identified by sequence similarity; lipase/esterase 4768811 1042532 PP_4218 Pseudomonas putida KT2440 lipase/esterase NP_746335.1 4767855 R 160488 CDS NP_746336.1 26990911 1042489 complement(4768854..4779266) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01734; non-ribosomal siderophore peptide synthetase 4779266 ppsD 1042489 ppsD Pseudomonas putida KT2440 non-ribosomal siderophore peptide synthetase NP_746336.1 4768854 R 160488 CDS NP_746337.1 26990912 1042543 complement(4779427..4787313) 1 NC_002947.3 similar to GP:9948469; identified by sequence similarity; non-ribosomal peptide synthetase 4787313 1042543 PP_4220 Pseudomonas putida KT2440 non-ribosomal peptide synthetase NP_746337.1 4779427 R 160488 CDS NP_746338.1 26990913 1042549 complement(4787315..4793839) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01734; non-ribosomal peptide synthetase 4793839 1042549 PP_4221 Pseudomonas putida KT2440 non-ribosomal peptide synthetase NP_746338.1 4787315 R 160488 CDS NP_746339.1 26990914 1042545 complement(4793995..4794978) 1 NC_002947.3 similar to GB:L09228, SP:P35154, PID:410131, and GB:AL009126; identified by sequence similarity; syrP protein 4794978 1042545 PP_4222 Pseudomonas putida KT2440 syrP protein NP_746339.1 4793995 R 160488 CDS NP_746340.1 26990915 1042550 complement(4795084..4796442) 1 NC_002947.3 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase 4796442 1042550 PP_4223 Pseudomonas putida KT2440 diaminobutyrate--2-oxoglutarate aminotransferase NP_746340.1 4795084 R 160488 CDS NP_746341.1 26990916 1042552 complement(4796660..4797982) 1 NC_002947.3 similar to GP:8885860, and GP:8885860; identified by sequence similarity; integral membrane sensor signal transduction histidine kinase 4797982 1042552 PP_4224 Pseudomonas putida KT2440 integral membrane sensor signal transduction histidine kinase NP_746341.1 4796660 R 160488 CDS NP_746342.1 26990917 1042555 complement(4797979..4798662) 1 NC_002947.3 similar to GP:8885859, and GP:8885859; identified by sequence similarity; winged helix family two component transcriptional regulator 4798662 1042555 PP_4225 Pseudomonas putida KT2440 winged helix family two component transcriptional regulator NP_746342.1 4797979 R 160488 CDS NP_746343.1 26990918 1042565 4798903..4799388 1 NC_002947.3 hypothetical protein 4799388 1042565 PP_4226 Pseudomonas putida KT2440 hypothetical protein NP_746343.1 4798903 D 160488 CDS NP_746344.1 26990919 1042556 complement(4799967..4800437) 1 NC_002947.3 hypothetical protein 4800437 1042556 PP_4227 Pseudomonas putida KT2440 hypothetical protein NP_746344.1 4799967 R 160488 CDS NP_746345.1 26990920 1042559 4800496..4801113 1 NC_002947.3 hypothetical protein 4801113 1042559 PP_4228 Pseudomonas putida KT2440 hypothetical protein NP_746345.1 4800496 D 160488 CDS NP_746346.1 26990921 1042562 4801136..4801762 1 NC_002947.3 hypothetical protein 4801762 1042562 PP_4229 Pseudomonas putida KT2440 hypothetical protein NP_746346.1 4801136 D 160488 CDS NP_746347.1 26990922 1042570 complement(4801779..4802345) 1 NC_002947.3 similar to GP:6273649; identified by sequence similarity; hypothetical protein 4802345 1042570 PP_4230 Pseudomonas putida KT2440 hypothetical protein NP_746347.1 4801779 R 160488 CDS NP_746348.1 26990923 1044815 complement(4802342..4803313) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02625; xanthine dehydrogenase accessory factor 4803313 1044815 PP_4231 Pseudomonas putida KT2440 xanthine dehydrogenase accessory factor NP_746348.1 4802342 R 160488 CDS NP_746349.1 26990924 1042575 complement(4803317..4804528) 1 NC_002947.3 similar to GB:J03464, GB:Y00724, GB:X55525, GB:X03892, GB:J00114, GB:K02568, GB:M21353, GB:M21671, GB:M28985, GB:K02046, GB:M22816, GB:S98904, GB:M64229, GB:M22817, GB:M35391, GB:M21189, GB:K01078, GB:M31886, GB:S41101, GB:S59218, GB:S59211, GB:V00503, GB:X02488, SP:P08123, PID:1418930, PID:179596, PID:179603, PID:179634, PID:180394, PID:180882, PID:189685, PID:190305, PID:2078468, PID:2388555, PID:30023, PID:30102, PID:553606, and PID:825646; identified by sequence similarity; gluconate 2-dehydrogenase 4804528 1042575 PP_4232 Pseudomonas putida KT2440 gluconate 2-dehydrogenase NP_746349.1 4803317 R 160488 CDS NP_746350.1 26990925 1042577 complement(4804531..4805067) 1 NC_002947.3 similar to GP:2463458; identified by sequence similarity; (2Fe-2S)-binding protein 4805067 1042577 PP_4233 Pseudomonas putida KT2440 (2Fe-2S)-binding protein NP_746350.1 4804531 R 160488 CDS NP_746351.1 26990926 1042590 4808445..4810160 1 NC_002947.3 identified by match to PFAM protein family HMM PF03772; protein-disulfide reductase 4810160 dsbD-2 1042590 dsbD-2 Pseudomonas putida KT2440 protein-disulfide reductase NP_746351.1 4808445 D 160488 CDS NP_746352.1 26990927 1042593 4810160..4810996 1 NC_002947.3 similar to GB:J03810, SP:P11168, and PID:307125; identified by sequence similarity; redoxin domain-containing protein 4810996 1042593 PP_4236 Pseudomonas putida KT2440 redoxin domain-containing protein NP_746352.1 4810160 D 160488 CDS NP_746353.1 26990928 1042585 4810998..4811756 1 NC_002947.3 Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase 4811756 dsbG 1042585 dsbG Pseudomonas putida KT2440 disulfide isomerase/thiol-disulfide oxidase NP_746353.1 4810998 D 160488 CDS NP_746354.1 26990929 1045166 4811756..4812079 1 NC_002947.3 hypothetical protein 4812079 1045166 PP_4238 Pseudomonas putida KT2440 hypothetical protein NP_746354.1 4811756 D 160488 CDS NP_746355.1 26990930 1046168 complement(4813853..4813954) 1 NC_002947.3 hypothetical protein 4813954 1046168 PP_4239 Pseudomonas putida KT2440 hypothetical protein NP_746355.1 4813853 R 160488 CDS NP_746356.1 26990931 1042604 4814432..4815634 1 NC_002947.3 similar to GB:J03930, GB:M15694, GB:M19161, GB:Y00512, GB:M31008, SP:P05187, SP:P05188, SP:P06861, SP:P09923, SP:P10696, PID:178432, PID:178442, PID:178446, PID:296631, PID:553176, PID:553177, GB:J03930, GB:M15694, GB:M19161, GB:Y00512, GB:M31008, SP:P05187, SP:P05188, SP:P06861, SP:P09923, SP:P10696, PID:178432, PID:178442, PID:178446, PID:296631, PID:553176, and PID:553177; identified by sequence similarity; microcin b17 processing protein mcbd 4815634 1042604 PP_4240 Pseudomonas putida KT2440 microcin b17 processing protein mcbd NP_746356.1 4814432 D 160488 CDS NP_746357.1 26990932 1043734 complement(4816806..4817033) 1 NC_002947.3 hypothetical protein 4817033 1043734 PP_4241 Pseudomonas putida KT2440 hypothetical protein NP_746357.1 4816806 R 160488 CDS NP_746358.1 26990933 1042599 4817304..4818098 1 NC_002947.3 hypothetical protein 4818098 1042599 PP_4242 Pseudomonas putida KT2440 hypothetical protein NP_746358.1 4817304 D 160488 CDS NP_746359.1 26990934 1042600 complement(4818235..4831188) 1 NC_002947.3 catalyzes the specific recognition and activation of amino acids during peptide synthesis; involved in the biosynthesis of the peptide chain of pyoverdines; peptide synthase 4831188 1042600 PP_4243 Pseudomonas putida KT2440 peptide synthase NP_746359.1 4818235 R 160488 CDS NP_746360.1 26990935 1041651 4831494..4832024 1 NC_002947.3 RNA polymerase sigma factor involved in the synthesis of the siderophores pyoverdine in Pseudomonas and malleobactin in Burkholderia; also involved in the synthesis of exotoxin and PrpL protease; extracytoplasmic-function sigma-70 factor 4832024 pfrI 1041651 pfrI Pseudomonas putida KT2440 extracytoplasmic-function sigma-70 factor NP_746360.1 4831494 D 160488 CDS NP_746361.1 26990936 1042741 complement(4832176..4832793) 1 NC_002947.3 similar to GP:5738527, and SP:Q9Z3Q9; identified by sequence similarity; siderophore biosynthesis protein 4832793 1042741 PP_4245 Pseudomonas putida KT2440 siderophore biosynthesis protein NP_746361.1 4832176 R 160488 CDS NP_746362.1 26990937 1045089 complement(4833253..4834053) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; hypothetical protein 4834053 1045089 PP_4246 Pseudomonas putida KT2440 hypothetical protein NP_746362.1 4833253 R 160488 CDS NP_746363.1 26990938 1046058 4834225..4834776 1 NC_002947.3 identified by match to PFAM protein family HMM PF00929; exonuclease 4834776 1046058 PP_4247 Pseudomonas putida KT2440 exonuclease NP_746363.1 4834225 D 160488 CDS NP_746364.1 26990939 1041951 4834851..4835135 1 NC_002947.3 hypothetical protein 4835135 1041951 PP_4248 Pseudomonas putida KT2440 hypothetical protein NP_746364.1 4834851 D 160488 CDS NP_746365.1 26990940 1041786 complement(4835250..4835942) 1 NC_002947.3 similar to GP:9947519; identified by sequence similarity; hypothetical protein 4835942 1041786 PP_4249 Pseudomonas putida KT2440 hypothetical protein NP_746365.1 4835250 R 160488 CDS NP_746366.1 26990941 1047010 4835993..4837417 1 NC_002947.3 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 4837417 ccoN-1 1047010 ccoN-1 Pseudomonas putida KT2440 cbb3-type cytochrome c oxidase subunit I NP_746366.1 4835993 D 160488 CDS NP_746367.1 26990942 1041937 4837431..4838039 1 NC_002947.3 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 4838039 ccoO-1 1041937 ccoO-1 Pseudomonas putida KT2440 cbb3-type cytochrome c oxidase subunit II NP_746367.1 4837431 D 160488 CDS NP_746368.1 26990943 1041734 4838045..4838239 1 NC_002947.3 cytochrome c oxidase, cbb3-type, CcoQ subunit 4838239 ccoQ-1 1041734 ccoQ-1 Pseudomonas putida KT2440 cytochrome c oxidase, cbb3-type, CcoQ subunit NP_746368.1 4838045 D 160488 CDS NP_746369.1 26990944 1041688 4838236..4839177 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00782; cytochrome c oxidase, cbb3-type subunit III 4839177 ccoP-1 1041688 ccoP-1 Pseudomonas putida KT2440 cytochrome c oxidase, cbb3-type subunit III NP_746369.1 4838236 D 160488 CDS NP_746370.1 26990945 1041686 4839357..4839632 1 NC_002947.3 hypothetical protein 4839632 1041686 PP_4254 Pseudomonas putida KT2440 hypothetical protein NP_746370.1 4839357 D 160488 CDS NP_746371.1 26990946 1042804 4839634..4841076 1 NC_002947.3 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 4841076 ccoN-2 1042804 ccoN-2 Pseudomonas putida KT2440 cbb3-type cytochrome c oxidase subunit I NP_746371.1 4839634 D 160488 CDS NP_746372.1 26990947 1041699 4841076..4841684 1 NC_002947.3 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 4841684 ccoO-2 1041699 ccoO-2 Pseudomonas putida KT2440 cbb3-type cytochrome c oxidase subunit II NP_746372.1 4841076 D 160488 CDS NP_746373.1 26990948 1041967 4841690..4841881 1 NC_002947.3 similar to GB:L24376, SP:P37870, PID:402363, and GB:AL009126; identified by sequence similarity; cbb3-type cytochrome oxidase subunit 4841881 ccoQ-2 1041967 ccoQ-2 Pseudomonas putida KT2440 cbb3-type cytochrome oxidase subunit NP_746373.1 4841690 D 160488 CDS NP_746374.1 26990949 1041696 4841878..4842855 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00782; cytochrome c oxidase, cbb3-type subunit III 4842855 ccoP-2 1041696 ccoP-2 Pseudomonas putida KT2440 cytochrome c oxidase, cbb3-type subunit III NP_746374.1 4841878 D 160488 CDS NP_746375.1 26990950 1046030 4843152..4844567 1 NC_002947.3 identified by match to PFAM protein family HMM PF00037; (Fe-S)-binding protein 4844567 1046030 PP_4259 Pseudomonas putida KT2440 (Fe-S)-binding protein NP_746375.1 4843152 D 160488 CDS NP_746376.1 26990951 1041983 4844583..4845113 1 NC_002947.3 hypothetical protein 4845113 1041983 PP_4260 Pseudomonas putida KT2440 hypothetical protein NP_746376.1 4844583 D 160488 CDS NP_746377.1 26990952 1041698 4845076..4847724 1 NC_002947.3 similar to GP:9947509, GB:S70527, GB:L37374, SP:P39748, GB:X76771, and PID:642090; identified by sequence similarity; heavy metal translocating P-type ATPase 4847724 1041698 PP_4261 Pseudomonas putida KT2440 heavy metal translocating P-type ATPase NP_746377.1 4845076 D 160488 CDS NP_746378.1 26990953 1042369 4847703..4847918 1 NC_002947.3 identified by match to PFAM protein family HMM PF03597; cbb3-type cytochrome oxidase maturation protein 4847918 ccoS 1042369 ccoS Pseudomonas putida KT2440 cbb3-type cytochrome oxidase maturation protein NP_746378.1 4847703 D 160488 CDS NP_746379.1 26990954 1041800 4847911..4848594 1 NC_002947.3 similar to GP:9947507; identified by sequence similarity; hypothetical protein 4848594 1041800 PP_4263 Pseudomonas putida KT2440 hypothetical protein NP_746379.1 4847911 D 160488 CDS NP_746380.1 26990955 1041746 4848700..4850082 1 NC_002947.3 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4850082 hemN 1041746 hemN Pseudomonas putida KT2440 coproporphyrinogen III oxidase NP_746380.1 4848700 D 160488 CDS NP_746381.1 26990956 1042625 4850269..4851003 1 NC_002947.3 similar to GP:3220199, GB:J05200, GB:S78717, GB:M91455, GB:S77392, SP:P21817, PID:1216475, PID:337722, PID:553643, and PID:579583; identified by sequence similarity; transcriptional regulator Anr 4851003 anr 1042625 anr Pseudomonas putida KT2440 transcriptional regulator Anr NP_746381.1 4850269 D 160488 CDS NP_746382.1 26990957 1045890 4851059..4851607 1 NC_002947.3 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 4851607 apt 1045890 apt Pseudomonas putida KT2440 adenine phosphoribosyltransferase NP_746382.1 4851059 D 160488 CDS NP_746383.1 26990958 1045230 complement(4851726..4852328) 1 NC_002947.3 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 4852328 recR 1045230 recR Pseudomonas putida KT2440 recombination protein RecR NP_746383.1 4851726 R 160488 CDS NP_746384.1 26990959 1045229 complement(4852625..4852960) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02575; hypothetical protein 4852960 1045229 PP_4268 Pseudomonas putida KT2440 hypothetical protein NP_746384.1 4852625 R 160488 CDS NP_746385.1 26990960 1041637 complement(4853024..4855099) 1 NC_002947.3 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 4855099 dnaX 1041637 dnaX Pseudomonas putida KT2440 DNA polymerase III subunits gamma and tau NP_746385.1 4853024 R 160488 CDS NP_746386.1 26990961 1046095 4855221..4856027 1 NC_002947.3 identified by match to PFAM protein family HMM PF00497; hypothetical protein 4856027 1046095 PP_4270 Pseudomonas putida KT2440 hypothetical protein NP_746386.1 4855221 D 160488 CDS NP_746387.1 26990962 1042649 4857182..4857361 1 NC_002947.3 hypothetical protein 4857361 1042649 PP_4271 Pseudomonas putida KT2440 hypothetical protein NP_746387.1 4857182 D 160488 CDS NP_746388.1 26990963 1043409 complement(4857377..4857934) 1 NC_002947.3 hypothetical protein 4857934 1043409 PP_4272 Pseudomonas putida KT2440 hypothetical protein NP_746388.1 4857377 R 160488 CDS NP_746389.1 26990964 1044172 4857949..4858368 1 NC_002947.3 identified by match to PFAM protein family HMM PF00376; MerR family transcriptional regulator 4858368 1044172 PP_4273 Pseudomonas putida KT2440 MerR family transcriptional regulator NP_746389.1 4857949 D 160488 CDS NP_746390.1 26990965 1042621 complement(4858718..4861048) 1 NC_002947.3 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 4861048 ligA 1042621 ligA Pseudomonas putida KT2440 NAD-dependent DNA ligase LigA NP_746390.1 4858718 R 160488 CDS NP_746391.1 26990966 1043251 complement(4861285..4862238) 1 NC_002947.3 interacts directly with the cell division protein ftsZ; probable receptor for the septal ring structure, may anchor it to the inner-membrane; cell division protein ZipA 4862238 zipA 1043251 zipA Pseudomonas putida KT2440 cell division protein ZipA NP_746391.1 4861285 R 160488 CDS NP_746392.1 26990967 1041658 complement(4862383..4865871) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02483; chromosome segregation protein SMC 4865871 1041658 PP_4276 Pseudomonas putida KT2440 chromosome segregation protein SMC NP_746392.1 4862383 R 160488 CDS NP_746393.1 26990968 1041639 complement(4865875..4866534) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00392; GntR family transcriptional regulator 4866534 1041639 PP_4277 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_746393.1 4865875 R 160488 CDS NP_746394.1 26990969 1045211 4866803..4868257 1 NC_002947.3 similar to GP:2956674; identified by sequence similarity; xanthine dehydrogenase, XdhA subunit 4868257 xdhA 1045211 xdhA Pseudomonas putida KT2440 xanthine dehydrogenase, XdhA subunit NP_746394.1 4866803 D 160488 CDS NP_746395.1 26990970 1041885 4868250..4870649 1 NC_002947.3 identified by match to PFAM protein family HMM PF01315; xanthine dehydrogenase, XdhB subunit 4870649 xdhB 1041885 xdhB Pseudomonas putida KT2440 xanthine dehydrogenase, XdhB subunit NP_746395.1 4868250 D 160488 CDS NP_746396.1 26990971 1041999 4870769..4871614 1 NC_002947.3 similar to GP:4741723; identified by sequence similarity; xanthine dehydrogenase accessory factor XdhC 4871614 1041999 PP_4280 Pseudomonas putida KT2440 xanthine dehydrogenase accessory factor XdhC NP_746396.1 4870769 D 160488 CDS NP_746397.1 26990972 1046094 4871625..4872929 1 NC_002947.3 Catalyzes the deamination of guanine; guanine deaminase 4872929 gad 1046094 gad Pseudomonas putida KT2440 guanine deaminase NP_746397.1 4871625 D 160488 CDS NP_746398.1 26990973 1041832 complement(4872926..4873618) 1 NC_002947.3 porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z 4873618 1041832 PP_4282 Pseudomonas putida KT2440 aquaporin Z NP_746398.1 4872926 R 160488 CDS NP_746399.1 26990974 1041830 complement(4873776..4874531) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00392; GntR family transcriptional regulator 4874531 1041830 PP_4283 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_746399.1 4873776 R 160488 CDS NP_746400.1 26990975 1044702 4874812..4876161 1 NC_002947.3 identified by match to PFAM protein family HMM PF04144; xanthine/uracil/vitamin C permease 4876161 1044702 PP_4284 Pseudomonas putida KT2440 xanthine/uracil/vitamin C permease NP_746400.1 4874812 D 160488 CDS NP_746401.1 26990976 1041769 complement(4876598..4876951) 1 NC_002947.3 transthyretin family protein 4876951 1041769 PP_4285 Pseudomonas putida KT2440 transthyretin family protein NP_746401.1 4876598 R 160488 CDS NP_746402.1 26990977 1041762 4877351..4878277 1 NC_002947.3 identified by match to PFAM protein family HMM PF01522; polysaccharide deacetylase 4878277 1041762 PP_4286 Pseudomonas putida KT2440 polysaccharide deacetylase NP_746402.1 4877351 D 160488 CDS NP_746403.1 26990978 1043742 4878277..4878792 1 NC_002947.3 hypothetical protein 4878792 1043742 PP_4287 Pseudomonas putida KT2440 hypothetical protein NP_746403.1 4878277 D 160488 CDS NP_746404.1 26990979 1041802 4878842..4879345 1 NC_002947.3 catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 4879345 1041802 PP_4288 Pseudomonas putida KT2440 ureidoglycolate hydrolase NP_746404.1 4878842 D 160488 CDS NP_746405.1 26990980 1041777 4879390..4880730 1 NC_002947.3 similar to GP:9947470; identified by sequence similarity; hypothetical protein 4880730 1041777 PP_4289 Pseudomonas putida KT2440 hypothetical protein NP_746405.1 4879390 D 160488 CDS NP_746406.1 26990981 1047014 4880917..4882272 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00801; xanthine/uracil permease 4882272 1047014 PP_4290 Pseudomonas putida KT2440 xanthine/uracil permease NP_746406.1 4880917 D 160488 CDS NP_746407.1 26990982 1044649 4882412..4883197 1 NC_002947.3 similar to GP:13937484; identified by sequence similarity; hypothetical protein 4883197 1044649 PP_4291 Pseudomonas putida KT2440 hypothetical protein NP_746407.1 4882412 D 160488 CDS NP_746408.1 26990983 1043318 4883337..4883519 1 NC_002947.3 hypothetical protein 4883519 1043318 PP_4292 Pseudomonas putida KT2440 hypothetical protein NP_746408.1 4883337 D 160488 CDS NP_746409.1 26990984 1041773 4883551..4884333 1 NC_002947.3 similar to GP:13937484; identified by sequence similarity; hypothetical protein 4884333 1041773 PP_4293 Pseudomonas putida KT2440 hypothetical protein NP_746409.1 4883551 D 160488 CDS NP_746410.1 26990985 1047017 complement(4884462..4885376) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01810; hypothetical protein 4885376 1047017 PP_4294 Pseudomonas putida KT2440 hypothetical protein NP_746410.1 4884462 R 160488 CDS NP_746411.1 26990986 1041807 4885509..4886120 1 NC_002947.3 identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 4886120 1041807 PP_4295 Pseudomonas putida KT2440 TetR family transcriptional regulator NP_746411.1 4885509 D 160488 CDS NP_746412.1 26990987 1044349 complement(4886243..4886683) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03928; hypothetical protein 4886683 1044349 PP_4296 Pseudomonas putida KT2440 hypothetical protein NP_746412.1 4886243 R 160488 CDS NP_746413.1 26990988 1041768 4886941..4888716 1 NC_002947.3 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 4888716 gcl 1041768 gcl Pseudomonas putida KT2440 glyoxylate carboligase NP_746413.1 4886941 D 160488 CDS NP_746414.1 26990989 1041767 4888771..4889553 1 NC_002947.3 similar to GB:J03799, GB:X15005, GB:S37431, GB:M14199, GB:X61156, GB:U36484, SP:P08865, PID:1125065, PID:34272, and PID:386857; identified by sequence similarity; hydroxypyruvate isomerase 4889553 hyi 1041767 hyi Pseudomonas putida KT2440 hydroxypyruvate isomerase NP_746414.1 4888771 D 160488 CDS NP_746415.1 26990990 1041816 4889706..4890599 1 NC_002947.3 similar to SP:P23523; identified by sequence similarity; 2-hydroxy-3-oxopropionate reductase 4890599 glxR 1041816 glxR Pseudomonas putida KT2440 2-hydroxy-3-oxopropionate reductase NP_746415.1 4889706 D 160488 CDS NP_746416.1 26990991 1044355 4890838..4892112 1 NC_002947.3 similar to GB:L34058, SP:P55290, PID:1381790, PID:1381792, PID:506408, GB:L34058, SP:P55290, PID:1381790, PID:1381792, and PID:506408; identified by sequence similarity; hydroxypyruvate reductase 4892112 1044355 PP_4300 Pseudomonas putida KT2440 hydroxypyruvate reductase NP_746416.1 4890838 D 160488 CDS NP_746417.1 26990992 1045600 4892109..4893524 1 NC_002947.3 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 4893524 pykF 1045600 pykF Pseudomonas putida KT2440 pyruvate kinase NP_746417.1 4892109 D 160488 CDS NP_746418.1 26990993 1041808 4893732..4894607 1 NC_002947.3 identified by match to PFAM protein family HMM PF04186; Urea transporter 4894607 1041808 PP_4302 Pseudomonas putida KT2440 Urea transporter NP_746418.1 4893732 D 160488 CDS NP_746419.1 26990994 1046132 complement(4894658..4895398) 1 NC_002947.3 similar to GP:1070029, and GP:2950328; identified by sequence similarity; hypothetical protein 4895398 1046132 PP_4303 Pseudomonas putida KT2440 hypothetical protein NP_746419.1 4894658 R 160488 CDS NP_746420.1 26990995 1044638 4895545..4896366 1 NC_002947.3 identified by match to PFAM protein family HMM PF00914; cation transporter voltage-gated ion channel cation transporter 4896366 1044638 PP_4304 Pseudomonas putida KT2440 cation transporter voltage-gated ion channel cation transporter NP_746420.1 4895545 D 160488 CDS NP_746421.1 26990996 1043415 4896574..4897572 1 NC_002947.3 similar to SP:P06997; identified by sequence similarity; sulfate ABC transporter substrate-binding protein 4897572 1043415 PP_4305 Pseudomonas putida KT2440 sulfate ABC transporter substrate-binding protein NP_746421.1 4896574 D 160488 CDS NP_746422.1 26990997 1042344 complement(4897586..4898542) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03602; hypothetical protein 4898542 1042344 PP_4306 Pseudomonas putida KT2440 hypothetical protein NP_746422.1 4897586 R 160488 CDS NP_746423.1 26990998 1041670 complement(4898544..4899467) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00892; hypothetical protein 4899467 1041670 PP_4307 Pseudomonas putida KT2440 hypothetical protein NP_746423.1 4898544 R 160488 CDS NP_746424.1 26990999 1041834 4899601..4900038 1 NC_002947.3 similar to GP:9948639; identified by sequence similarity; AsnC family transcriptional regulator 4900038 1041834 PP_4308 Pseudomonas putida KT2440 AsnC family transcriptional regulator NP_746424.1 4899601 D 160488 CDS NP_746425.1 26991000 1043128 4900536..4902068 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00800; NCS1 nucleoside transporter 4902068 1043128 PP_4309 Pseudomonas putida KT2440 NCS1 nucleoside transporter NP_746425.1 4900536 D 160488 CDS NP_746426.1 26991001 1044648 4902085..4902813 1 NC_002947.3 similar to GB:X03833, GB:X02851, GB:M15329, GB:X56086, SP:P01583, PID:186278, PID:186280, PID:33786, PID:33795, PID:35661, PID:755744, GB:X03833, GB:X02851, GB:M15329, GB:X56086, SP:P01583, PID:186278, PID:186280, PID:33786, PID:33795, PID:35661, and PID:755744; identified by sequence similarity; hydantoin racemase 4902813 1044648 PP_4310 Pseudomonas putida KT2440 hydantoin racemase NP_746426.1 4902085 D 160488 CDS NP_746427.1 26991002 1041640 complement(4902932..4904125) 1 NC_002947.3 similar to GB:X12534, SP:P10114, PID:35861, and PID:412184; identified by sequence similarity; D-amino-acid dehydrogenase 4904125 1041640 PP_4311 Pseudomonas putida KT2440 D-amino-acid dehydrogenase NP_746427.1 4902932 R 160488 CDS NP_746428.1 26991003 1041660 complement(4904170..4904832) 1 NC_002947.3 similar to GP:624074, and GP:624074; identified by sequence similarity; hypothetical protein 4904832 1041660 PP_4312 Pseudomonas putida KT2440 hypothetical protein NP_746428.1 4904170 R 160488 CDS NP_746429.1 26991004 1044631 complement(4905067..4905405) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00254; FKBP-type peptidylprolyl isomerase 4905405 1044631 PP_4313 Pseudomonas putida KT2440 FKBP-type peptidylprolyl isomerase NP_746429.1 4905067 R 160488 CDS NP_746430.1 26991005 1041791 complement(4905533..4906021) 1 NC_002947.3 similar to GP:15156320, GB:M28819, SP:P18784, PID:145869, PID:882534, GB:U00096, and PID:1789380; identified by sequence similarity; hypothetical protein 4906021 1041791 PP_4314 Pseudomonas putida KT2440 hypothetical protein NP_746430.1 4905533 R 160488 CDS NP_746431.1 26991006 1046525 complement(4906008..4906796) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02567; PhzF family phenazine biosynthesis protein 4906796 1046525 PP_4315 Pseudomonas putida KT2440 PhzF family phenazine biosynthesis protein NP_746431.1 4906008 R 160488 CDS NP_746432.1 26991007 1043861 complement(4906849..4907787) 1 NC_002947.3 Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 4907787 1043861 PP_4316 Pseudomonas putida KT2440 2-hydroxyacid dehydrogenase NP_746432.1 4906849 R 160488 CDS NP_746433.1 26991008 1041633 complement(4907826..4908023) 1 NC_002947.3 hypothetical protein 4908023 1041633 PP_4317 Pseudomonas putida KT2440 hypothetical protein NP_746433.1 4907826 R 160488 CDS NP_746434.1 26991009 1041635 4908305..4909606 1 NC_002947.3 identified by match to PFAM protein family HMM PF01609; ISPpu8, transposase 4909606 1041635 PP_4318 Pseudomonas putida KT2440 ISPpu8, transposase NP_746434.1 4908305 D 160488 CDS NP_746435.1 26991010 1041798 complement(4910085..4910501) 1 NC_002947.3 hypothetical protein 4910501 1041798 PP_4319 Pseudomonas putida KT2440 hypothetical protein NP_746435.1 4910085 R 160488 CDS NP_746436.1 26991011 1043462 complement(4912176..4912712) 1 NC_002947.3 similar to GB:U09073, GB:U09074, PID:483888, PID:483890, PID:483904, GB:J03810, SP:P11168, and PID:307125; identified by sequence similarity; thiol--disulfide oxidoreductase 4912712 dsbE 1043462 dsbE Pseudomonas putida KT2440 thiol--disulfide oxidoreductase NP_746436.1 4912176 R 160488 CDS NP_746437.1 26991012 1041632 complement(4912709..4914697) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00353; cytochrome C biogenesis protein CcmF 4914697 ccmF 1041632 ccmF Pseudomonas putida KT2440 cytochrome C biogenesis protein CcmF NP_746437.1 4912709 R 160488 CDS NP_746438.1 26991013 1044576 complement(4914694..4915149) 1 NC_002947.3 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome C biogenesis protein CcmE 4915149 ccmE 1044576 ccmE Pseudomonas putida KT2440 cytochrome C biogenesis protein CcmE NP_746438.1 4914694 R 160488 CDS NP_746439.1 26991014 1041809 complement(4915146..4915322) 1 NC_002947.3 similar to GB:M28880, GB:X16609, GB:X16609, SP:P16157, GB:S82671, PID:1845219, PID:747710, GB:U07992, SP:P01842, PID:1335156, PID:1335158, PID:1335174, PID:186127, PID:2114277, PID:2114297, PID:2114299, PID:33700, PID:386814, PID:468249, PID:553491, and PID:871288; identified by sequence similarity; cytochrome C biogenesis protein CcmD 4915322 ccmD 1041809 ccmD Pseudomonas putida KT2440 cytochrome C biogenesis protein CcmD NP_746439.1 4915146 R 160488 CDS NP_746440.1 26991015 1044099 complement(4915319..4916086) 1 NC_002947.3 similar to GP:4107341; identified by sequence similarity; heme exporter protein CcmC 4916086 ccmC 1044099 ccmC Pseudomonas putida KT2440 heme exporter protein CcmC NP_746440.1 4915319 R 160488 CDS NP_746441.1 26991016 1041668 complement(4916133..4916801) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01190; heme exporter protein CcmB 4916801 ccmB 1041668 ccmB Pseudomonas putida KT2440 heme exporter protein CcmB NP_746441.1 4916133 R 160488 CDS NP_746442.1 26991017 1046142 complement(4916798..4917430) 1 NC_002947.3 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 4917430 ccmA 1046142 ccmA Pseudomonas putida KT2440 cytochrome c biogenesis protein CcmA NP_746442.1 4916798 R 160488 CDS NP_746443.1 26991018 1046124 4917601..4919157 1 NC_002947.3 identified by match to PFAM protein family HMM PF02120; hypothetical protein 4919157 1046124 PP_4328 Pseudomonas putida KT2440 hypothetical protein NP_746443.1 4917601 D 160488 CDS NP_746444.1 26991019 1046151 4919154..4919492 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00789; FlhB domain-containing protein 4919492 1046151 PP_4329 Pseudomonas putida KT2440 FlhB domain-containing protein NP_746444.1 4919154 D 160488 CDS NP_746445.1 26991020 1042923 4919591..4922272 1 NC_002947.3 similar to GP:433689; identified by sequence similarity; hypothetical protein 4922272 1042923 PP_4330 Pseudomonas putida KT2440 hypothetical protein NP_746445.1 4919591 D 160488 CDS NP_746446.1 26991021 1044707 complement(4922380..4922775) 1 NC_002947.3 hypothetical protein 4922775 1044707 PP_4331 Pseudomonas putida KT2440 hypothetical protein NP_746446.1 4922380 R 160488 CDS NP_746447.1 26991022 1045448 complement(4922777..4923256) 1 NC_002947.3 similar to GP:2853606, and GP:2853606; identified by sequence similarity; purine-binding chemotaxis protein CheW 4923256 cheW 1045448 cheW Pseudomonas putida KT2440 purine-binding chemotaxis protein CheW NP_746447.1 4922777 R 160488 CDS NP_746448.1 26991023 1043822 complement(4923298..4924194) 1 NC_002947.3 similar to GP:2853605; identified by sequence similarity; chemotaxis protein CheW 4924194 1043822 PP_4333 Pseudomonas putida KT2440 chemotaxis protein CheW NP_746448.1 4923298 R 160488 CDS NP_746449.2 161378125 1044245 complement(4924194..4924982) 1 NC_002947.3 similar to GP:2853604, GB:M25108, SP:P05106, and PID:386833; identified by sequence similarity; ParA family protein 4924982 1044245 PP_4334 Pseudomonas putida KT2440 ParA family protein NP_746449.2 4924194 R 160488 CDS NP_746450.1 26991025 1043042 complement(4925167..4926024) 1 NC_002947.3 Homologous to MotB. These organism have both MotB and MotD. With MotC (a MotA homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. Either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; flagellar motor protein MotD 4926024 motB 1043042 motB Pseudomonas putida KT2440 flagellar motor protein MotD NP_746450.1 4925167 R 160488 CDS NP_746451.1 26991026 1045521 complement(4926028..4926768) 1 NC_002947.3 homologous to MotA; this protein with a related protein (a MotB homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; these organisms have both MotA and MotC; flagellar motor protein 4926768 motC 1045521 motC Pseudomonas putida KT2440 flagellar motor protein NP_746451.1 4926028 R 160488 CDS NP_746452.1 26991027 1046087 complement(4926768..4927880) 1 NC_002947.3 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 4927880 cheB 1046087 cheB Pseudomonas putida KT2440 chemotaxis-specific methylesterase NP_746452.1 4926768 R 160488 CDS NP_746453.1 26991028 1041662 complement(4927927..4930170) 1 NC_002947.3 similar to GP:2853600, and GP:2853600; identified by sequence similarity; chemotaxis protein CheA 4930170 cheA 1041662 cheA Pseudomonas putida KT2440 chemotaxis protein CheA NP_746453.1 4927927 R 160488 CDS NP_746454.1 26991029 1043780 complement(4930183..4930971) 1 NC_002947.3 similar to GP:2853599, and GP:2853599; identified by sequence similarity; chemotaxis protein CheZ 4930971 cheZ 1043780 cheZ Pseudomonas putida KT2440 chemotaxis protein CheZ NP_746454.1 4930183 R 160488 CDS NP_746455.1 26991030 1043398 complement(4930994..4931368) 1 NC_002947.3 similar to GP:2853598, and GP:2853598; identified by sequence similarity; response regulator receiver protein 4931368 cheY 1043398 cheY Pseudomonas putida KT2440 response regulator receiver protein NP_746455.1 4930994 R 160488 CDS NP_746456.1 26991031 1044726 complement(4931476..4932216) 1 NC_002947.3 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 4932216 fliA 1044726 fliA Pseudomonas putida KT2440 flagellar biosynthesis sigma factor NP_746456.1 4931476 R 160488 CDS NP_746457.1 26991032 1045202 complement(4932213..4933046) 1 NC_002947.3 similar to GP:6692581; identified by sequence similarity; flagellar number regulator FleN 4933046 fleN 1045202 fleN Pseudomonas putida KT2440 flagellar number regulator FleN NP_746457.1 4932213 R 160488 CDS NP_746458.1 26991033 1045204 complement(4933140..4934447) 1 NC_002947.3 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 4934447 flhF 1045204 flhF Pseudomonas putida KT2440 flagellar biosynthesis regulator FlhF NP_746458.1 4933140 R 160488 CDS NP_746459.1 26991034 1045242 complement(4934459..4936588) 1 NC_002947.3 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 4936588 flhA 1045242 flhA Pseudomonas putida KT2440 flagellar biosynthesis protein FlhA NP_746459.1 4934459 R 160488 CDS NP_746460.1 26991035 1042667 4937006..4937698 1 NC_002947.3 identified by match to PFAM protein family HMM PF00392; GntR family transcriptional regulator 4937698 1042667 PP_4345 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_746460.1 4937006 D 160488 CDS NP_746461.1 26991036 1042642 complement(4937693..4938751) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01820; D-alanine--D-alanine ligase 4938751 ddlA 1042642 ddlA Pseudomonas putida KT2440 D-alanine--D-alanine ligase NP_746461.1 4937693 R 160488 CDS NP_746462.1 26991037 1045005 4939227..4940474 1 NC_002947.3 identified by match to PFAM protein family HMM PF04055; hypothetical protein 4940474 1045005 PP_4347 Pseudomonas putida KT2440 hypothetical protein NP_746462.1 4939227 D 160488 CDS NP_746463.1 26991038 1044755 4940548..4941642 1 NC_002947.3 similar to SP:Q07703; identified by sequence similarity; cystathionine beta-lyase 4941642 1044755 PP_4348 Pseudomonas putida KT2440 cystathionine beta-lyase NP_746463.1 4940548 D 160488 CDS NP_746464.1 26991039 1041893 4941676..4942554 1 NC_002947.3 hypothetical protein 4942554 1041893 PP_4349 Pseudomonas putida KT2440 hypothetical protein NP_746464.1 4941676 D 160488 CDS NP_746465.1 26991040 1046086 4942565..4943728 1 NC_002947.3 similar to GP:7297897; identified by sequence similarity; aminotransferase 4943728 1046086 PP_4350 Pseudomonas putida KT2440 aminotransferase NP_746465.1 4942565 D 160488 CDS NP_746466.1 26991041 1042653 complement(4945437..4946579) 1 NC_002947.3 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 4946579 flhB 1042653 flhB Pseudomonas putida KT2440 flagellar biosynthesis protein FlhB NP_746466.1 4945437 R 160488 CDS NP_746467.1 26991042 1043790 complement(4946582..4947358) 1 NC_002947.3 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 4947358 fliR 1043790 fliR Pseudomonas putida KT2440 flagellar biosynthesis protein FliR NP_746467.1 4946582 R 160488 CDS NP_746468.1 26991043 1041891 complement(4947366..4947635) 1 NC_002947.3 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 4947635 fliQ 1041891 fliQ Pseudomonas putida KT2440 flagellar biosynthesis protein FliQ NP_746468.1 4947366 R 160488 CDS NP_746469.1 26991044 1041682 complement(4947657..4948412) 1 NC_002947.3 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 4948412 fliP 1041682 fliP Pseudomonas putida KT2440 flagellar biosynthesis protein FliP NP_746469.1 4947657 R 160488 CDS NP_746470.1 26991045 1043101 complement(4948412..4948846) 1 NC_002947.3 similar to GP:5921672, and GP:5921672; identified by sequence similarity; flagellar assembly protein FliO 4948846 fliO 1043101 fliO Pseudomonas putida KT2440 flagellar assembly protein FliO NP_746470.1 4948412 R 160488 CDS NP_746471.1 26991046 1045714 complement(4948859..4949344) 1 NC_002947.3 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 4949344 fliN 1045714 fliN Pseudomonas putida KT2440 flagellar motor switch protein NP_746471.1 4948859 R 160488 CDS NP_746472.1 26991047 1042947 complement(4949374..4950342) 1 NC_002947.3 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 4950342 fliM 1042947 fliM Pseudomonas putida KT2440 flagellar motor switch protein FliM NP_746472.1 4949374 R 160488 CDS NP_746473.1 26991048 1045666 complement(4950352..4950849) 1 NC_002947.3 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body protein FliL 4950849 fliL 1045666 fliL Pseudomonas putida KT2440 flagellar basal body protein FliL NP_746473.1 4950352 R 160488 CDS NP_746474.1 26991049 1045502 complement(4950877..4950999) 1 NC_002947.3 hypothetical protein 4950999 1045502 PP_4360 Pseudomonas putida KT2440 hypothetical protein NP_746474.1 4950877 R 160488 CDS NP_746475.1 26991050 1045701 complement(4951006..4952271) 1 NC_002947.3 similar to GP:5921668, and GP:5921668; identified by sequence similarity; flagellar hook-length control protein 4952271 fliK 1045701 fliK Pseudomonas putida KT2440 flagellar hook-length control protein NP_746475.1 4951006 R 160488 CDS NP_746476.1 26991051 1043087 complement(4952343..4952681) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01627; Hpt protein 4952681 1043087 PP_4362 Pseudomonas putida KT2440 Hpt protein NP_746476.1 4952343 R 160488 CDS NP_746477.1 26991052 1041733 complement(4952739..4954430) 1 NC_002947.3 similar to GP:5921667; identified by sequence similarity; response regulator receiver protein 4954430 1041733 PP_4363 Pseudomonas putida KT2440 response regulator receiver protein NP_746477.1 4952739 R 160488 CDS NP_746478.1 26991053 1042527 complement(4954439..4954744) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00377; anti-sigma-factor antagonist 4954744 1042527 PP_4364 Pseudomonas putida KT2440 anti-sigma-factor antagonist NP_746478.1 4954439 R 160488 CDS NP_746479.1 26991054 1046205 complement(4954921..4955373) 1 NC_002947.3 rod/hook and filament chaperone; flagellar biosynthesis chaperone 4955373 fliJ 1046205 fliJ Pseudomonas putida KT2440 flagellar biosynthesis chaperone NP_746479.1 4954921 R 160488 CDS NP_746480.2 161378124 1043501 complement(4955380..4956735) 1 NC_002947.3 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 4956735 fliI 1043501 fliI Pseudomonas putida KT2440 flagellum-specific ATP synthase NP_746480.2 4955380 R 160488 CDS NP_746481.1 26991056 1046146 complement(4956725..4957516) 1 NC_002947.3 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 4957516 fliH 1046146 fliH Pseudomonas putida KT2440 flagellar assembly protein H NP_746481.1 4956725 R 160488 CDS NP_746482.2 161378123 1041836 complement(4957679..4958698) 1 NC_002947.3 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 4958698 fliG 1041836 fliG Pseudomonas putida KT2440 flagellar motor switch protein G NP_746482.2 4957679 R 160488 CDS NP_746483.1 26991058 1042454 complement(4958691..4960469) 1 NC_002947.3 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 4960469 fliF 1042454 fliF Pseudomonas putida KT2440 flagellar MS-ring protein NP_746483.1 4958691 R 160488 CDS NP_746484.1 26991059 1041797 complement(4960485..4960817) 1 NC_002947.3 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 4960817 fliE 1041797 fliE Pseudomonas putida KT2440 flagellar hook-basal body protein FliE NP_746484.1 4960485 R 160488 CDS NP_746485.1 26991060 1041972 complement(4961081..4962436) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00072; Fis family transcriptional regulator 4962436 fleR 1041972 fleR Pseudomonas putida KT2440 Fis family transcriptional regulator NP_746485.1 4961081 R 160488 CDS NP_746486.1 26991061 1041790 complement(4962436..4963653) 1 NC_002947.3 similar to GP:12056607, GB:U09065, PID:483872, PID:553456, PID:553461, PID:553463, PID:553468, PID:619426, and PID:976315; identified by sequence similarity; PAS/PAC sensor signal transduction histidine kinase 4963653 fleS 1041790 fleS Pseudomonas putida KT2440 PAS/PAC sensor signal transduction histidine kinase NP_746486.1 4962436 R 160488 CDS NP_746487.1 26991062 1042576 complement(4963881..4965356) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02954; Fis family transcriptional regulator 4965356 fleQ 1042576 fleQ Pseudomonas putida KT2440 Fis family transcriptional regulator NP_746487.1 4963881 R 160488 CDS NP_746488.1 26991063 1042267 complement(4965527..4965820) 1 NC_002947.3 similar to GP:12056605, GB:X63561, PID:1220484, PID:56080, and PID:56093; identified by sequence similarity; hypothetical protein 4965820 1042267 PP_4374 Pseudomonas putida KT2440 hypothetical protein NP_746488.1 4965527 R 160488 CDS NP_746489.1 26991064 1042597 complement(4965839..4966234) 1 NC_002947.3 flagellin specific chaperone; flagellar protein FliS 4966234 fliS 1042597 fliS Pseudomonas putida KT2440 flagellar protein FliS NP_746489.1 4965839 R 160488 CDS NP_746490.1 26991065 1042463 complement(4966317..4967675) 1 NC_002947.3 similar to GP:7081488, GB:U14003, SP:P39280, PID:536990, GB:U00096, and PID:1790589; identified by sequence similarity; flagellar cap protein FliD 4967675 fliD 1042463 fliD Pseudomonas putida KT2440 flagellar cap protein FliD NP_746490.1 4966317 R 160488 CDS NP_746491.1 26991066 1042498 complement(4967759..4968103) 1 NC_002947.3 similar to GB:M32101, SP:P16701, PID:145659, GB:U00096, PID:1788764, PID:1799843, PID:1799853, GB:M32101, SP:P16701, PID:145659, GB:U00096, PID:1788764, PID:1799843, and PID:1799853; identified by sequence similarity; flagellin FlaG 4968103 1042498 PP_4377 Pseudomonas putida KT2440 flagellin FlaG NP_746491.1 4967759 R 160488 CDS NP_746492.1 26991067 1041796 complement(4968178..4970241) 1 NC_002947.3 similar to GB:M19888, GB:M21300, GB:M21301, SP:P22528, SP:P35321, PID:338417, PID:338421, PID:338434, GB:M19888, GB:M21300, GB:M21301, SP:P22528, SP:P35321, PID:338417, PID:338421, and PID:338434; identified by sequence similarity; flagellin FliC 4970241 fliC 1041796 fliC Pseudomonas putida KT2440 flagellin FliC NP_746492.1 4968178 R 160488 CDS NP_746493.1 26991068 1046532 complement(4970635..4971564) 1 NC_002947.3 similar to GP:10175505, SP:P28155, PID:48733, and PID:536810; identified by sequence similarity; beta-ketoacyl-ACP synthase 4971564 1046532 PP_4379 Pseudomonas putida KT2440 beta-ketoacyl-ACP synthase NP_746493.1 4970635 R 160488 CDS NP_746494.1 26991069 1042471 complement(4971981..4973546) 1 NC_002947.3 With FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL 4973546 flgL 1042471 flgL Pseudomonas putida KT2440 flagellar hook-associated protein FlgL NP_746494.1 4971981 R 160488 CDS NP_746495.1 26991070 1042481 complement(4973560..4975602) 1 NC_002947.3 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 4975602 flgK 1042481 flgK Pseudomonas putida KT2440 flagellar hook-associated protein FlgK NP_746495.1 4973560 R 160488 CDS NP_746496.1 26991071 1042627 complement(4975615..4976769) 1 NC_002947.3 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein FlgJ 4976769 flgJ 1042627 flgJ Pseudomonas putida KT2440 flagellar rod assembly protein FlgJ NP_746496.1 4975615 R 160488 CDS NP_746497.1 26991072 1042309 complement(4976781..4977890) 1 NC_002947.3 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring biosynthesis protein FlgA 4977890 flgI 1042309 flgI Pseudomonas putida KT2440 flagellar basal body P-ring biosynthesis protein FlgA NP_746497.1 4976781 R 160488 CDS NP_746498.1 26991073 1044376 complement(4977903..4978598) 1 NC_002947.3 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 4978598 flgH 1044376 flgH Pseudomonas putida KT2440 flagellar basal body L-ring protein NP_746498.1 4977903 R 160488 CDS NP_746499.1 26991074 1043820 complement(4978635..4979420) 1 NC_002947.3 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 4979420 flgG 1043820 flgG Pseudomonas putida KT2440 flagellar basal body rod protein FlgG NP_746499.1 4978635 R 160488 CDS NP_746500.1 26991075 1041829 complement(4979468..4980208) 1 NC_002947.3 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 4980208 flgF 1041829 flgF Pseudomonas putida KT2440 flagellar basal body rod protein FlgF NP_746500.1 4979468 R 160488 CDS NP_746501.1 26991076 1043250 complement(4980369..4980560) 1 NC_002947.3 hypothetical protein 4980560 1043250 PP_4387 Pseudomonas putida KT2440 hypothetical protein NP_746501.1 4980369 R 160488 CDS NP_746502.1 26991077 1044605 complement(4980627..4981949) 1 NC_002947.3 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 4981949 flgE 1044605 flgE Pseudomonas putida KT2440 flagellar hook protein FlgE NP_746502.1 4980627 R 160488 CDS NP_746503.1 26991078 1041827 complement(4981978..4982679) 1 NC_002947.3 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 4982679 flgD 1041827 flgD Pseudomonas putida KT2440 flagellar basal body rod modification protein NP_746503.1 4981978 R 160488 CDS NP_746504.1 26991079 1041825 complement(4982692..4983135) 1 NC_002947.3 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 4983135 flgC 1041825 flgC Pseudomonas putida KT2440 flagellar basal body rod protein FlgC NP_746504.1 4982692 R 160488 CDS NP_746505.1 26991080 1041605 complement(4983138..4983548) 1 NC_002947.3 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal-body rod protein FlgB 4983548 flgB 1041605 flgB Pseudomonas putida KT2440 flagellar basal-body rod protein FlgB NP_746505.1 4983138 R 160488 CDS NP_746506.1 26991081 1043793 complement(4983870..4984697) 1 NC_002947.3 similar to GB:X68505, GB:X68505, GB:X63381, GB:X63381, SP:Q02078, SP:Q02080, PID:1197538, PID:34536, and PID:432656; identified by sequence similarity; chemotaxis protein CheR 4984697 cheR 1043793 cheR Pseudomonas putida KT2440 chemotaxis protein CheR NP_746506.1 4983870 R 160488 CDS NP_746507.1 26991082 1041669 complement(4984750..4985679) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01584; chemotaxis protein CheV 4985679 cheV-3 1041669 cheV-3 Pseudomonas putida KT2440 chemotaxis protein CheV NP_746507.1 4984750 R 160488 CDS NP_746508.1 26991083 1042637 4985832..4986509 1 NC_002947.3 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 4986509 flgA 1042637 flgA Pseudomonas putida KT2440 flagellar basal body P-ring biosynthesis protein FlgA NP_746508.1 4985832 D 160488 CDS NP_746509.1 26991084 1044243 4986674..4986988 1 NC_002947.3 similar to GB:X72755, SP:Q07325, and PID:311376; identified by sequence similarity; anti-sigma-28 factor FlgM 4986988 flgM 1044243 flgM Pseudomonas putida KT2440 anti-sigma-28 factor FlgM NP_746509.1 4986674 D 160488 CDS NP_746510.1 26991085 1041708 4987038..4987505 1 NC_002947.3 FlgN family protein 4987505 1041708 PP_4396 Pseudomonas putida KT2440 FlgN family protein NP_746510.1 4987038 D 160488 CDS NP_746511.1 26991086 1043210 4987585..4988328 1 NC_002947.3 similar to GP:9949486; identified by sequence similarity; type IV pilus assembly PilZ 4988328 1043210 PP_4397 Pseudomonas putida KT2440 type IV pilus assembly PilZ NP_746511.1 4987585 D 160488 CDS NP_746512.1 26991087 1042970 complement(4988422..4989756) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00083; major facilitator family transporter 4989756 1042970 PP_4398 Pseudomonas putida KT2440 major facilitator family transporter NP_746512.1 4988422 R 160488 CDS NP_746513.1 26991088 1041876 complement(4989888..4991129) 1 NC_002947.3 similar to GB:L04656, SP:P35219, and PID:179938; identified by sequence similarity; glutamine synthetase 4991129 1041876 PP_4399 Pseudomonas putida KT2440 glutamine synthetase NP_746513.1 4989888 R 160488 CDS NP_746514.1 26991089 1043794 complement(4991358..4991843) 1 NC_002947.3 similar to GB:J04173, SP:P18669, PID:551174, GB:J04173, SP:P18669, and PID:551174; identified by sequence similarity; transcriptional regulator BkdR 4991843 bkdR 1043794 bkdR Pseudomonas putida KT2440 transcriptional regulator BkdR NP_746514.1 4991358 R 160488 CDS NP_746515.1 26991090 1041720 4992042..4993274 1 NC_002947.3 similar to SP:P09060, and SP:P09060; identified by sequence similarity; 3-methyl-2-oxobutanoate dehydrogenase 4993274 bkdA1 1041720 bkdA1 Pseudomonas putida KT2440 3-methyl-2-oxobutanoate dehydrogenase NP_746515.1 4992042 D 160488 CDS NP_746516.1 26991091 1043968 4993315..4994334 1 NC_002947.3 similar to GP:790515; identified by sequence similarity; 2-oxoisovalerate dehydrogenase subunit beta 4994334 bkdA2 1043968 bkdA2 Pseudomonas putida KT2440 2-oxoisovalerate dehydrogenase subunit beta NP_746516.1 4993315 D 160488 CDS NP_746517.1 26991092 1043796 4994335..4995606 1 NC_002947.3 Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; branched-chain alpha-keto acid dehydrogenase subunit E2 4995606 bkdB 1043796 bkdB Pseudomonas putida KT2440 branched-chain alpha-keto acid dehydrogenase subunit E2 NP_746517.1 4994335 D 160488 CDS NP_746518.1 26991093 1041933 4995609..4996988 1 NC_002947.3 E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 4996988 lpdV 1041933 lpdV Pseudomonas putida KT2440 dihydrolipoamide dehydrogenase NP_746518.1 4995609 D 160488 CDS NP_746519.1 26991094 1041913 complement(4997100..4998098) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00990; PAS/PAC sensor-containing diguanylate cyclase 4998098 1041913 PP_4405 Pseudomonas putida KT2440 PAS/PAC sensor-containing diguanylate cyclase NP_746519.1 4997100 R 160488 CDS NP_746520.1 26991095 1044033 4998314..4998841 1 NC_002947.3 hypothetical protein 4998841 1044033 PP_4406 Pseudomonas putida KT2440 hypothetical protein NP_746520.1 4998314 D 160488 CDS NP_746521.1 26991096 1041721 4999146..5000528 1 NC_002947.3 similar to GP:969027; identified by sequence similarity; amino acid ABC transporter permease 5000528 1041721 PP_4407 Pseudomonas putida KT2440 amino acid ABC transporter permease NP_746521.1 4999146 D 160488 CDS NP_746522.1 26991097 1046128 5002214..5003644 1 NC_002947.3 identified by match to PFAM protein family HMM PF00589; phage integrase site specific recombinase 5003644 1046128 PP_4409 Pseudomonas putida KT2440 phage integrase site specific recombinase NP_746522.1 5002214 D 160488 CDS NP_746523.1 26991098 1043927 5003647..5006946 1 NC_002947.3 hypothetical protein 5006946 1043927 PP_4410 Pseudomonas putida KT2440 hypothetical protein NP_746523.1 5003647 D 160488 CDS NP_746524.1 26991099 1043923 5008515..5009063 1 NC_002947.3 hypothetical protein 5009063 1043923 PP_4411 Pseudomonas putida KT2440 hypothetical protein NP_746524.1 5008515 D 160488 CDS NP_746525.1 26991100 1041729 5009060..5009638 1 NC_002947.3 hypothetical protein 5009638 1041729 PP_4412 Pseudomonas putida KT2440 hypothetical protein NP_746525.1 5009060 D 160488 CDS NP_746526.1 26991101 1041819 5009810..5010130 1 NC_002947.3 hypothetical protein 5010130 1041819 PP_4413 Pseudomonas putida KT2440 hypothetical protein NP_746526.1 5009810 D 160488 CDS NP_746527.1 26991102 1043935 5010489..5011589 1 NC_002947.3 identified by match to PFAM protein family HMM PF00589; hypothetical protein 5011589 1043935 PP_4415 Pseudomonas putida KT2440 hypothetical protein NP_746527.1 5010489 D 160488 CDS NP_746528.1 26991103 1043938 complement(5010498..5010590) 1 NC_002947.3 hypothetical protein 5010590 1043938 PP_4414 Pseudomonas putida KT2440 hypothetical protein NP_746528.1 5010498 R 160488 CDS NP_746529.1 26991104 1041747 5012932..5013078 1 NC_002947.3 hypothetical protein 5013078 1041747 PP_4416 Pseudomonas putida KT2440 hypothetical protein NP_746529.1 5012932 D 160488 CDS NP_746530.1 26991105 1043920 complement(5012949..5013089) 1 NC_002947.3 hypothetical protein 5013089 1043920 PP_4417 Pseudomonas putida KT2440 hypothetical protein NP_746530.1 5012949 R 160488 CDS NP_746531.1 26991106 1043919 5013563..5013886 1 NC_002947.3 hypothetical protein 5013886 1043919 PP_4418 Pseudomonas putida KT2440 hypothetical protein NP_746531.1 5013563 D 160488 CDS NP_746532.1 26991107 1043907 5014188..5014496 1 NC_002947.3 identified by match to PFAM protein family HMM PF04218; transposase, OrfA 5014496 1043907 PP_4419 Pseudomonas putida KT2440 transposase, OrfA NP_746532.1 5014188 D 160488 CDS NP_746533.1 26991108 1042605 5014541..5015350 1 NC_002947.3 identified by match to PFAM protein family HMM PF00665; transposase, OrfB 5015350 1042605 PP_4420 Pseudomonas putida KT2440 transposase, OrfB NP_746533.1 5014541 D 160488 CDS NP_746534.1 26991109 1044262 complement(5015969..5017360) 1 NC_002947.3 similar to SP:P32724, GB:X58406, PID:581361, PID:2094830, and GB:AL123456; identified by sequence similarity; hypothetical protein 5017360 1044262 PP_4421 Pseudomonas putida KT2440 hypothetical protein NP_746534.1 5015969 R 160488 CDS NP_746535.1 26991110 1042053 complement(5017382..5018854) 1 NC_002947.3 similar to GB:D11466, GB:D28788, GB:X77725, GB:D28787, GB:D28789, GB:D28790, GB:D28791, SP:P37287, PID:1132481, and PID:219994; identified by sequence similarity; succinate-semialdehyde dehydrogenase 5018854 1042053 PP_4422 Pseudomonas putida KT2440 succinate-semialdehyde dehydrogenase NP_746535.1 5017382 R 160488 CDS NP_746536.1 26991111 1042420 complement(5019114..5020109) 1 NC_002947.3 similar to GP:15140294; identified by sequence similarity; hypothetical protein 5020109 1042420 PP_4423 Pseudomonas putida KT2440 hypothetical protein NP_746536.1 5019114 R 160488 CDS NP_746537.1 26991112 1041968 5020312..5020779 1 NC_002947.3 similar to SP:P03062, and GB:X52093; identified by sequence similarity; AsnC family transcriptional regulator 5020779 1041968 PP_4424 Pseudomonas putida KT2440 AsnC family transcriptional regulator NP_746537.1 5020312 D 160488 CDS NP_746538.1 26991113 1043791 complement(5020830..5021597) 1 NC_002947.3 similar to SP:P03062, GB:X52093, SP:P03062, and GB:X52093; identified by sequence similarity; amino acid ABC transporter ATP-binding protein 5021597 1043791 PP_4425 Pseudomonas putida KT2440 amino acid ABC transporter ATP-binding protein NP_746538.1 5020830 R 160488 CDS NP_746539.1 26991114 1043905 complement(5021696..5022352) 1 NC_002947.3 similar to SP:P03062, and GB:X52093; identified by sequence similarity; amino acid ABC transporter permease 5022352 1043905 PP_4426 Pseudomonas putida KT2440 amino acid ABC transporter permease NP_746539.1 5021696 R 160488 CDS NP_746540.1 26991115 1046121 complement(5022352..5023008) 1 NC_002947.3 similar to SP:P03062, and GB:X52093; identified by sequence similarity; amino acid ABC transporter permease 5023008 1046121 PP_4427 Pseudomonas putida KT2440 amino acid ABC transporter permease NP_746540.1 5022352 R 160488 CDS NP_746541.1 26991116 1043895 complement(5023079..5023933) 1 NC_002947.3 similar to GP:6689161, SP:P03062, and GB:X52093; identified by sequence similarity; amino acid ABC transporter substrate-binding protein 5023933 1043895 PP_4428 Pseudomonas putida KT2440 amino acid ABC transporter substrate-binding protein NP_746541.1 5023079 R 160488 CDS NP_746542.1 26991117 1043855 5024177..5025577 1 NC_002947.3 similar to GP:9948113; identified by sequence similarity; GntR family transcriptional regulator 5025577 1043855 PP_4429 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_746542.1 5024177 D 160488 CDS NP_746543.1 26991118 1041638 5025685..5026677 1 NC_002947.3 catalyzes the formation of 2-oxobutanoate from L-threonine; involved in ectoine utilization; threonine dehydratase 5026677 eutB 1041638 eutB Pseudomonas putida KT2440 threonine dehydratase NP_746543.1 5025685 D 160488 CDS NP_746544.1 26991119 1042345 5026689..5027681 1 NC_002947.3 cyclodeaminase; ectoine utilization protein EutC 5027681 1042345 PP_4431 Pseudomonas putida KT2440 ectoine utilization protein EutC NP_746544.1 5026689 D 160488 CDS NP_746545.1 26991120 1044367 5027806..5028921 1 NC_002947.3 similar to GP:10174357; identified by sequence similarity; peptidase, M24 family protein 5028921 1044367 PP_4432 Pseudomonas putida KT2440 peptidase, M24 family protein NP_746545.1 5027806 D 160488 CDS NP_746546.1 26991121 1042557 5029360..5030712 1 NC_002947.3 similar to GP:9716209; identified by sequence similarity; amino acid MFS transporter 5030712 1042557 PP_4433 Pseudomonas putida KT2440 amino acid MFS transporter NP_746546.1 5029360 D 160488 CDS NP_746547.1 26991122 1041878 5031207..5032505 1 NC_002947.3 catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 5032505 dadA-1 1041878 dadA-1 Pseudomonas putida KT2440 D-amino acid dehydrogenase small subunit NP_746547.1 5031207 D 160488 CDS NP_746548.1 26991123 1041642 5032480..5032833 1 NC_002947.3 identified by match to PFAM protein family HMM PF01042; hypothetical protein 5032833 1041642 PP_4435 Pseudomonas putida KT2440 hypothetical protein NP_746548.1 5032480 D 160488 CDS NP_746549.1 26991124 1046112 5033243..5033563 1 NC_002947.3 similar to GP:2773259, and GP:2773259; identified by sequence similarity; ISPpu14, transposase Orf1 5033563 1046112 PP_4437 Pseudomonas putida KT2440 ISPpu14, transposase Orf1 NP_746549.1 5033243 D 160488 CDS NP_746550.1 26991125 1043872 5033560..5033895 1 NC_002947.3 similar to GP:4928612; identified by sequence similarity; ISPpu14, transposase Orf2 5033895 1043872 PP_4438 Pseudomonas putida KT2440 ISPpu14, transposase Orf2 NP_746550.1 5033560 D 160488 CDS NP_746551.1 26991126 1041653 5033959..5035494 1 NC_002947.3 similar to GP:3414883, and GP:6009427; identified by sequence similarity; ISPpu14, transposase Orf3 5035494 1041653 PP_4439 Pseudomonas putida KT2440 ISPpu14, transposase Orf3 NP_746551.1 5033959 D 160488 CDS NP_746552.1 26991127 1043856 5036191..5036511 1 NC_002947.3 identified by match to PFAM protein family HMM PF01527; ISPpu14, transposase Orf1 5036511 1043856 PP_4441 Pseudomonas putida KT2440 ISPpu14, transposase Orf1 NP_746552.1 5036191 D 160488 CDS NP_746553.1 26991128 1041815 5036508..5036843 1 NC_002947.3 similar to GP:4928612, and GP:13926136; identified by sequence similarity; ISPpu14, transposase Orf2 5036843 1041815 PP_4442 Pseudomonas putida KT2440 ISPpu14, transposase Orf2 NP_746553.1 5036508 D 160488 CDS NP_746554.1 26991129 1046098 5036907..5038442 1 NC_002947.3 similar to GP:3414883, and GP:3414883; identified by sequence similarity; ISPpu14, transposase Orf3 5038442 1046098 PP_4443 Pseudomonas putida KT2440 ISPpu14, transposase Orf3 NP_746554.1 5036907 D 160488 CDS NP_746555.1 26991130 1041711 5038453..5038707 1 NC_002947.3 similar to GP:11139520; identified by sequence similarity; transposase 5038707 1041711 PP_4444 Pseudomonas putida KT2440 transposase NP_746555.1 5038453 D 160488 CDS NP_746556.1 26991131 1041675 5038698..5039456 1 NC_002947.3 similar to GP:11139521, and SP:P05822; identified by sequence similarity; IS3 family transposase 5039456 1041675 PP_4445 Pseudomonas putida KT2440 IS3 family transposase NP_746556.1 5038698 D 160488 CDS NP_746557.1 26991132 1041813 complement(5039380..5040501) 1 NC_002947.3 similar to GP:2688957; identified by sequence similarity; group II intron-encoding maturase 5040501 1041813 PP_4446 Pseudomonas putida KT2440 group II intron-encoding maturase NP_746557.1 5039380 R 160488 CDS NP_746558.1 26991133 1041589 5041682..5042932 1 NC_002947.3 hypothetical protein 5042932 1041589 PP_4447 Pseudomonas putida KT2440 hypothetical protein NP_746558.1 5041682 D 160488 CDS NP_746559.1 26991134 1044318 5042929..5044692 1 NC_002947.3 similar to GB:Z27502, GB:Z29983, SP:P04438, PID:1335182, PID:32878, PID:474960, PID:505435, PID:563647, GB:Z27502, GB:Z29983, SP:P04438, PID:1335182, PID:32878, PID:474960, PID:505435, and PID:563647; identified by sequence similarity; hypothetical protein 5044692 1044318 PP_4448 Pseudomonas putida KT2440 hypothetical protein NP_746559.1 5042929 D 160488 CDS NP_746560.1 26991135 1041599 complement(5045377..5045631) 1 NC_002947.3 similar to GP:4928013; identified by sequence similarity; hypothetical protein 5045631 1041599 PP_4449 Pseudomonas putida KT2440 hypothetical protein NP_746560.1 5045377 R 160488 CDS NP_746561.1 26991136 1043467 5046041..5046667 1 NC_002947.3 similar to GB:L20469, GB:L35902, GB:L35903, GB:U25441, GB:U32499, SP:P35462, PID:579579, PID:806903, and PID:927342; identified by sequence similarity; phosphoglycerate mutase 5046667 1043467 PP_4450 Pseudomonas putida KT2440 phosphoglycerate mutase NP_746561.1 5046041 D 160488 CDS NP_746562.1 26991137 1041903 complement(5048271..5049356) 1 NC_002947.3 hypothetical protein 5049356 1041903 PP_4451 Pseudomonas putida KT2440 hypothetical protein NP_746562.1 5048271 R 160488 CDS NP_746563.1 26991138 1041627 complement(5051432..5052511) 1 NC_002947.3 similar to GP:6498362, GB:L31573, SP:P51687, and PID:508502; identified by sequence similarity; NAD/NADP octopine/nopaline dehydrogenase 5052511 1041627 PP_4452 Pseudomonas putida KT2440 NAD/NADP octopine/nopaline dehydrogenase NP_746563.1 5051432 R 160488 CDS NP_746564.1 26991139 1046189 complement(5052616..5054448) 1 NC_002947.3 similar to GP:2665715; identified by sequence similarity; opine ABC transporter ATP-binding protein 5054448 1046189 PP_4453 Pseudomonas putida KT2440 opine ABC transporter ATP-binding protein NP_746564.1 5052616 R 160488 CDS NP_746565.1 26991140 1045213 complement(5054514..5055386) 1 NC_002947.3 similar to GP:2665714, and GP:2665714; identified by sequence similarity; opine ABC transporter permease 5055386 1045213 PP_4454 Pseudomonas putida KT2440 opine ABC transporter permease NP_746565.1 5054514 R 160488 CDS NP_746566.1 26991141 1041835 complement(5055383..5056324) 1 NC_002947.3 similar to GP:2665713; identified by sequence similarity; opine ABC transporter substrate-binding protein 5056324 1041835 PP_4455 Pseudomonas putida KT2440 opine ABC transporter substrate-binding protein NP_746566.1 5055383 R 160488 CDS NP_746567.1 26991142 1045217 complement(5056455..5057849) 1 NC_002947.3 similar to GP:6498364; identified by sequence similarity; nopaline dehydrogenase 5057849 1045217 PP_4456 Pseudomonas putida KT2440 nopaline dehydrogenase NP_746567.1 5056455 R 160488 CDS NP_746568.1 26991143 1041902 complement(5058123..5059250) 1 NC_002947.3 similar to GP:6498366; identified by sequence similarity; nopaline dehydrogenase 5059250 1041902 PP_4457 Pseudomonas putida KT2440 nopaline dehydrogenase NP_746568.1 5058123 R 160488 CDS NP_746569.1 26991144 1041954 complement(5059251..5060831) 1 NC_002947.3 similar to GP:2665716, and GP:2665716; identified by sequence similarity; opine ABC transporter substrate-binding protein 5060831 1041954 PP_4458 Pseudomonas putida KT2440 opine ABC transporter substrate-binding protein NP_746569.1 5059251 R 160488 CDS NP_746570.1 26991145 1042042 5061322..5062419 1 NC_002947.3 similar to GP:5824150, and GP:5824150; identified by sequence similarity; transposase 5062419 1042042 PP_4459 Pseudomonas putida KT2440 transposase NP_746570.1 5061322 D 160488 CDS NP_746571.1 26991146 1041839 5062617..5063543 1 NC_002947.3 similar to GB:J02984, GB:M32405, SP:P11174, PID:306898, and PID:337416; identified by sequence similarity; LysR family transcriptional regulator 5063543 1041839 PP_4460 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_746571.1 5062617 D 160488 CDS NP_746572.1 26991147 1045144 complement(5063702..5064994) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00883; major facilitator family transporter 5064994 1045144 PP_4461 Pseudomonas putida KT2440 major facilitator family transporter NP_746572.1 5063702 R 160488 CDS NP_746573.1 26991148 1041984 complement(5065105..5065770) 1 NC_002947.3 similar to GP:13094205; identified by sequence similarity; 4-hydroxy-4-methyl-2-oxoglutarate aldolase 5065770 1041984 PP_4462 Pseudomonas putida KT2440 4-hydroxy-4-methyl-2-oxoglutarate aldolase NP_746573.1 5065105 R 160488 CDS NP_746574.1 26991149 1041877 complement(5065767..5066588) 1 NC_002947.3 similar to GP:3513356; identified by sequence similarity; carbon-nitrogen hydrolase 5066588 1041877 PP_4463 Pseudomonas putida KT2440 carbon-nitrogen hydrolase NP_746574.1 5065767 R 160488 CDS NP_746575.1 26991150 1044462 complement(5066629..5067534) 1 NC_002947.3 similar to GB:J02984, GB:M32405, SP:P11174, PID:306898, and PID:337416; identified by sequence similarity; LysR family transcriptional regulator 5067534 1044462 PP_4464 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_746575.1 5066629 R 160488 CDS NP_746576.1 26991151 1044687 complement(5067950..5069302) 1 NC_002947.3 similar to GP:3253207; identified by sequence similarity; porin 5069302 1044687 PP_4465 Pseudomonas putida KT2440 porin NP_746576.1 5067950 R 160488 CDS NP_746577.1 26991152 1041927 complement(5070012..5070884) 1 NC_002947.3 similar to SP:P10088; identified by sequence similarity; TauD/TfdA family dioxygenase 5070884 1041927 PP_4466 Pseudomonas putida KT2440 TauD/TfdA family dioxygenase NP_746577.1 5070012 R 160488 CDS NP_746578.1 26991153 1043834 5071130..5072032 1 NC_002947.3 similar to GP:6498174; identified by sequence similarity; LysR family transcriptional regulator 5072032 1043834 PP_4467 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_746578.1 5071130 D 160488 CDS NP_746579.1 26991154 1044276 5074743..5075234 1 NC_002947.3 identified by match to PFAM protein family HMM PF01381; Cro/CI family transcriptional regulator 5075234 1044276 PP_4468 Pseudomonas putida KT2440 Cro/CI family transcriptional regulator NP_746579.1 5074743 D 160488 CDS NP_746580.1 26991155 1045683 complement(5075939..5076538) 1 NC_002947.3 similar to GB:M22538, SP:P19404, PID:1311466, and PID:188852; identified by sequence similarity; phosphonate metabolism protein/1,5-bisphosphokinase PhnN 5076538 gmk-1 1045683 gmk-1 Pseudomonas putida KT2440 phosphonate metabolism protein/1,5-bisphosphokinase PhnN NP_746580.1 5075939 R 160488 CDS NP_746581.1 26991156 1042008 5076877..5077203 1 NC_002947.3 identified by match to PFAM protein family HMM PF03869; Arc domain-containing protein DNA binding domain-containing protein 5077203 algZ 1042008 algZ Pseudomonas putida KT2440 Arc domain-containing protein DNA binding domain-containing protein NP_746581.1 5076877 D 160488 CDS NP_746582.1 26991157 1042002 complement(5077311..5078753) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00400; magnesium transporter 5078753 mgtE 1042002 mgtE Pseudomonas putida KT2440 magnesium transporter NP_746582.1 5077311 R 160488 CDS NP_746583.1 26991158 1042051 complement(5079945..5080133) 1 NC_002947.3 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 5080133 csrA 1042051 csrA Pseudomonas putida KT2440 carbon storage regulator NP_746583.1 5079945 R 160488 CDS NP_746584.1 26991159 1041833 complement(5080301..5081536) 1 NC_002947.3 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 5081536 1041833 PP_4473 Pseudomonas putida KT2440 aspartate kinase NP_746584.1 5080301 R 160488 CDS NP_746585.1 26991160 1045889 complement(5081639..5084263) 1 NC_002947.3 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 5084263 alaS 1045889 alaS Pseudomonas putida KT2440 alanyl-tRNA synthetase NP_746585.1 5081639 R 160488 CDS NP_746586.1 26991161 1044338 complement(5084648..5085655) 1 NC_002947.3 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 5085655 astE 1044338 astE Pseudomonas putida KT2440 succinylglutamate desuccinylase NP_746586.1 5084648 R 160488 CDS NP_746587.1 26991162 1041935 complement(5085666..5085956) 1 NC_002947.3 similar to GP:2656128; identified by sequence similarity; hypothetical protein 5085956 1041935 PP_4476 Pseudomonas putida KT2440 hypothetical protein NP_746587.1 5085666 R 160488 CDS NP_746588.1 26991163 1041931 complement(5085971..5087320) 1 NC_002947.3 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 5087320 astB 1041931 astB Pseudomonas putida KT2440 succinylarginine dihydrolase NP_746588.1 5085971 R 160488 CDS NP_746589.1 26991164 1043982 complement(5087344..5088807) 1 NC_002947.3 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 5088807 astD 1043982 astD Pseudomonas putida KT2440 succinylglutamic semialdehyde dehydrogenase NP_746589.1 5087344 R 160488 CDS NP_746590.1 26991165 1041844 complement(5088808..5089836) 1 NC_002947.3 arginine N-succinyltransferase subunit beta 5089836 aruG 1041844 aruG Pseudomonas putida KT2440 arginine N-succinyltransferase subunit beta NP_746590.1 5088808 R 160488 CDS NP_746591.1 26991166 1043805 complement(5089915..5090934) 1 NC_002947.3 arginine N-succinyltransferase subunit alpha 5090934 aruF 1043805 aruF Pseudomonas putida KT2440 arginine N-succinyltransferase subunit alpha NP_746591.1 5089915 R 160488 CDS NP_746592.1 26991167 1041851 complement(5091082..5092302) 1 NC_002947.3 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase 5092302 argD 1041851 argD Pseudomonas putida KT2440 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase NP_746592.1 5091082 R 160488 CDS NP_746593.1 26991168 1043797 complement(5092639..5093619) 1 NC_002947.3 similar to GB:M28829, PID:551976, GB:M28829, and PID:551976; identified by sequence similarity; AraC family transcriptional regulator 5093619 1043797 PP_4482 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_746593.1 5092639 R 160488 CDS NP_746594.1 26991169 1041857 complement(5093718..5094482) 1 NC_002947.3 similar to GB:L14430, SP:Q07131, PID:292874, and PID:881394; identified by sequence similarity; basic amino acid ABC transporter ATP-binding protein 5094482 1041857 PP_4483 Pseudomonas putida KT2440 basic amino acid ABC transporter ATP-binding protein NP_746594.1 5093718 R 160488 CDS NP_746595.1 26991170 1043572 complement(5094505..5095203) 1 NC_002947.3 similar to GP:2668597, GB:M59807, SP:P24001, and PID:189226; identified by sequence similarity; polar amino acid ABC transporter inner membrane subunit 5095203 1043572 PP_4484 Pseudomonas putida KT2440 polar amino acid ABC transporter inner membrane subunit NP_746595.1 5094505 R 160488 CDS NP_746596.1 26991171 1043373 complement(5095200..5095889) 1 NC_002947.3 similar to GB:M81188, SP:P00449, GB:M81914, PID:143203, PID:143552, and PID:143555; identified by sequence similarity; polar amino acid ABC transporter inner membrane subunit 5095889 1043373 PP_4485 Pseudomonas putida KT2440 polar amino acid ABC transporter inner membrane subunit NP_746596.1 5095200 R 160488 CDS NP_746597.1 26991172 1043399 complement(5095978..5096763) 1 NC_002947.3 similar to GB:M81188, SP:P00449, GB:M81914, PID:143203, PID:143552, and PID:143555; identified by sequence similarity; amino acid ABC transporter substrate-binding protein 5096763 1043399 PP_4486 Pseudomonas putida KT2440 amino acid ABC transporter substrate-binding protein NP_746597.1 5095978 R 160488 CDS NP_746598.1 26991173 1042436 complement(5097299..5099260) 1 NC_002947.3 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 5099260 acsA 1042436 acsA Pseudomonas putida KT2440 acetyl-CoA synthetase NP_746598.1 5097299 R 160488 CDS NP_746599.1 26991174 1043185 5099658..5099912 1 NC_002947.3 hypothetical protein 5099912 1043185 PP_4488 Pseudomonas putida KT2440 hypothetical protein NP_746599.1 5099658 D 160488 CDS NP_746600.1 26991175 1042510 complement(5100065..5101624) 1 NC_002947.3 similar to GB:X79146, and PID:487694; identified by sequence similarity; transcriptional regulator TyrR 5101624 phhR 1042510 phhR Pseudomonas putida KT2440 transcriptional regulator TyrR NP_746600.1 5100065 R 160488 CDS NP_746601.1 26991176 1043385 5101882..5102670 1 NC_002947.3 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 5102670 phhA 1043385 phhA Pseudomonas putida KT2440 phenylalanine 4-monooxygenase NP_746601.1 5101882 D 160488 CDS NP_746602.1 26991177 1043386 5102710..5103066 1 NC_002947.3 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 5103066 phhB 1043386 phhB Pseudomonas putida KT2440 pterin-4-alpha-carbinolamine dehydratase NP_746602.1 5102710 D 160488 CDS NP_746603.1 26991178 1043408 5103773..5104975 1 NC_002947.3 similar to GB:M23575, GB:L36606, GB:M28234, GB:M28235, GB:M34420, SP:P11462, SP:P11463, SP:P11464, PID:180235, PID:190649, PID:306801, PID:306802, PID:493743, PID:553625, PID:553627, PID:603453, PID:808015, and PID:904281; identified by sequence similarity; major facilitator superfamily transporter 5104975 1043408 PP_4492 Pseudomonas putida KT2440 major facilitator superfamily transporter NP_746603.1 5103773 D 160488 CDS NP_746604.1 26991179 1041889 complement(5105089..5108109) 1 NC_002947.3 similar to GP:9887339; identified by sequence similarity; FAD linked oxidase domain-containing protein 5108109 1041889 PP_4493 Pseudomonas putida KT2440 FAD linked oxidase domain-containing protein NP_746604.1 5105089 R 160488 CDS NP_746605.1 26991180 1046259 5108262..5109146 1 NC_002947.3 similar to GP:9887337; identified by sequence similarity; LysR family transcriptional regulator 5109146 1046259 PP_4494 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_746605.1 5108262 D 160488 CDS NP_746606.1 26991181 1041875 complement(5109285..5110703) 1 NC_002947.3 similar to SP:P15993; identified by sequence similarity; amino acid ABC transporter permease 5110703 1041875 PP_4495 Pseudomonas putida KT2440 amino acid ABC transporter permease NP_746606.1 5109285 R 160488 CDS NP_746607.1 26991182 1043473 complement(5112675..5113508) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04079; hypothetical protein 5113508 1043473 PP_4497 Pseudomonas putida KT2440 hypothetical protein NP_746607.1 5112675 R 160488 CDS NP_746608.1 26991183 1043476 complement(5113429..5114316) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02616; chromosome segregation and condensation protein ScpA 5114316 1043476 PP_4498 Pseudomonas putida KT2440 chromosome segregation and condensation protein ScpA NP_746608.1 5113429 R 160488 CDS NP_746609.1 26991184 1041849 complement(5114280..5114945) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 5114945 1041849 PP_4499 Pseudomonas putida KT2440 Sua5/YciO/YrdC/YwlC family protein NP_746609.1 5114280 R 160488 CDS NP_746610.1 26991185 1043801 complement(5114923..5115783) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02231; trpH family protein 5115783 1043801 PP_4500 Pseudomonas putida KT2440 trpH family protein NP_746610.1 5114923 R 160488 CDS NP_746611.1 26991186 1043752 5115851..5116444 1 NC_002947.3 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 5116444 ispZ 1043752 ispZ Pseudomonas putida KT2440 intracellular septation protein A NP_746611.1 5115851 D 160488 CDS NP_746612.2 161378122 1043678 5116446..5116745 1 NC_002947.3 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; hypothetical protein 5116745 1043678 PP_4502 Pseudomonas putida KT2440 hypothetical protein NP_746612.2 5116446 D 160488 CDS NP_746613.1 26991188 1041930 5116910..5117587 1 NC_002947.3 identified by match to PFAM protein family HMM PF00072; winged helix family two component transcriptional regulator 5117587 1041930 PP_4503 Pseudomonas putida KT2440 winged helix family two component transcriptional regulator NP_746613.1 5116910 D 160488 CDS NP_746614.1 26991189 1044142 5117750..5118166 1 NC_002947.3 hypothetical protein 5118166 1044142 PP_4504 Pseudomonas putida KT2440 hypothetical protein NP_746614.1 5117750 D 160488 CDS NP_746615.1 26991190 1044016 5118225..5119565 1 NC_002947.3 similar to GP:9949326; identified by sequence similarity; integral membrane sensor signal transduction histidine kinase 5119565 1044016 PP_4505 Pseudomonas putida KT2440 integral membrane sensor signal transduction histidine kinase NP_746615.1 5118225 D 160488 CDS NP_746616.1 26991191 1041845 complement(5119696..5120253) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00881; nitroreductase 5120253 1041845 PP_4506 Pseudomonas putida KT2440 nitroreductase NP_746616.1 5119696 R 160488 CDS NP_746617.1 26991192 1046350 5120356..5121810 1 NC_002947.3 identified by match to PFAM protein family HMM PF04247; TrkH family potassium uptake protein 5121810 1046350 PP_4507 Pseudomonas putida KT2440 TrkH family potassium uptake protein NP_746617.1 5120356 D 160488 CDS NP_746618.1 26991193 1045806 complement(5121767..5122828) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 5122828 1045806 PP_4508 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_746618.1 5121767 R 160488 CDS NP_746619.1 26991194 1041598 5122982..5123293 1 NC_002947.3 hypothetical protein 5123293 1041598 PP_4509 Pseudomonas putida KT2440 hypothetical protein NP_746619.1 5122982 D 160488 CDS NP_746620.1 26991195 1041606 complement(5123332..5124129) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00149; metallophosphoesterase 5124129 1041606 PP_4510 Pseudomonas putida KT2440 metallophosphoesterase NP_746620.1 5123332 R 160488 CDS NP_746621.1 26991196 1041792 5124257..5125024 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 5125024 1041792 PP_4511 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_746621.1 5124257 D 160488 CDS NP_746622.1 26991197 1041618 5125206..5126096 1 NC_002947.3 identified by match to PFAM protein family HMM PF00892; hypothetical protein 5126096 1041618 PP_4512 Pseudomonas putida KT2440 hypothetical protein NP_746622.1 5125206 D 160488 CDS NP_746623.1 26991198 1042706 complement(5126097..5126378) 1 NC_002947.3 hypothetical protein 5126378 1042706 PP_4513 Pseudomonas putida KT2440 hypothetical protein NP_746623.1 5126097 R 160488 CDS NP_746624.1 26991199 1044827 5126377..5128632 1 NC_002947.3 identified by match to PFAM protein family HMM PF01734; patatin 5128632 1044827 PP_4514 Pseudomonas putida KT2440 patatin NP_746624.1 5126377 D 160488 CDS NP_746625.1 26991200 1041737 complement(5128665..5129102) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03551; MarR family transcriptional regulator 5129102 1041737 PP_4515 Pseudomonas putida KT2440 MarR family transcriptional regulator NP_746625.1 5128665 R 160488 CDS NP_746626.1 26991201 1041657 complement(5129254..5131401) 1 NC_002947.3 similar to SP:P15043; identified by sequence similarity; ATP-dependent DNA helicase RecQ 5131401 recQ 1041657 recQ Pseudomonas putida KT2440 ATP-dependent DNA helicase RecQ NP_746626.1 5129254 R 160488 CDS NP_746627.1 26991202 1043337 5131645..5132232 1 NC_002947.3 identified by match to PFAM protein family HMM PF03695; hypothetical protein 5132232 1043337 PP_4517 Pseudomonas putida KT2440 hypothetical protein NP_746627.1 5131645 D 160488 CDS NP_746628.1 26991203 1041612 5132240..5132605 1 NC_002947.3 identified by match to PFAM protein family HMM PF04304; hypothetical protein 5132605 1041612 PP_4518 Pseudomonas putida KT2440 hypothetical protein NP_746628.1 5132240 D 160488 CDS NP_746629.1 26991204 1042710 5132917..5134275 1 NC_002947.3 similar to GB:X12387, SP:P05184, SP:P08684, SP:P20815, PID:181354, PID:181372, PID:181374, PID:219963, PID:35911, and PID:510086; identified by sequence similarity; TolC family type I secretion outer membrane protein 5134275 tolC 1042710 tolC Pseudomonas putida KT2440 TolC family type I secretion outer membrane protein NP_746629.1 5132917 D 160488 CDS NP_746630.1 26991205 1041655 complement(5134338..5134937) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03942; DTW domain containing protein 5134937 1041655 PP_4520 Pseudomonas putida KT2440 DTW domain containing protein NP_746630.1 5134338 R 160488 CDS NP_746631.1 26991206 1046348 complement(5135002..5136567) 1 NC_002947.3 similar to GP:9947522; identified by sequence similarity; aerotaxis receptor 5136567 1046348 PP_4521 Pseudomonas putida KT2440 aerotaxis receptor NP_746631.1 5135002 R 160488 CDS NP_746632.1 26991207 1046351 complement(5136706..5137599) 1 NC_002947.3 similar to GP:9947370; identified by sequence similarity; LysR family transcriptional regulator 5137599 1046351 PP_4522 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_746632.1 5136706 R 160488 CDS NP_746633.1 26991208 1046349 5137812..5138774 1 NC_002947.3 similar to SP:P37819; identified by sequence similarity; agmatinase 5138774 1046349 PP_4523 Pseudomonas putida KT2440 agmatinase NP_746633.1 5137812 D 160488 CDS NP_746634.1 26991209 1046340 5138907..5140286 1 NC_002947.3 identified by match to PFAM protein family HMM PF04279; Na+/solute symporter 5140286 1046340 PP_4524 Pseudomonas putida KT2440 Na+/solute symporter NP_746634.1 5138907 D 160488 CDS NP_746635.1 26991210 1046344 complement(5140666..5141559) 1 NC_002947.3 similar to GP:9947361; identified by sequence similarity; LysR family transcriptional regulator 5141559 1046344 PP_4525 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_746635.1 5140666 R 160488 CDS NP_746636.1 26991211 1046341 5141664..5142836 1 NC_002947.3 identified by match to PFAM protein family HMM PF04306; hypothetical protein 5142836 1046341 PP_4526 Pseudomonas putida KT2440 hypothetical protein NP_746636.1 5141664 D 160488 CDS NP_746637.1 26991212 1046339 complement(5142855..5143781) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00892; hypothetical protein 5143781 1046339 PP_4527 Pseudomonas putida KT2440 hypothetical protein NP_746637.1 5142855 R 160488 CDS NP_746638.1 26991213 1046270 complement(5143887..5144318) 1 NC_002947.3 similar to GP:9949398; identified by sequence similarity; hypothetical protein 5144318 1046270 PP_4528 Pseudomonas putida KT2440 hypothetical protein NP_746638.1 5143887 R 160488 CDS NP_746639.1 26991214 1046338 complement(5144359..5144613) 1 NC_002947.3 hypothetical protein 5144613 1046338 PP_4529 Pseudomonas putida KT2440 hypothetical protein NP_746639.1 5144359 R 160488 CDS NP_746640.1 26991215 1046337 complement(5144591..5144869) 1 NC_002947.3 similar to GP:15073547, GB:D28124, SP:P41271, and PID:641822; identified by sequence similarity; hypothetical protein 5144869 1046337 PP_4530 Pseudomonas putida KT2440 hypothetical protein NP_746640.1 5144591 R 160488 CDS NP_746641.1 26991216 1046254 5145085..5145357 1 NC_002947.3 identified by match to PFAM protein family HMM PF03701; hypothetical protein 5145357 1046254 PP_4531 Pseudomonas putida KT2440 hypothetical protein NP_746641.1 5145085 D 160488 CDS NP_746642.1 26991217 1046264 complement(5145429..5146751) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00271; DEAD/DEAH box helicase 5146751 1046264 PP_4532 Pseudomonas putida KT2440 DEAD/DEAH box helicase NP_746642.1 5145429 R 160488 CDS NP_746643.1 26991218 1046261 5146894..5148195 1 NC_002947.3 identified by match to PFAM protein family HMM PF00924; mechanosensitive ion channel protein MscS 5148195 1046261 PP_4533 Pseudomonas putida KT2440 mechanosensitive ion channel protein MscS NP_746643.1 5146894 D 160488 CDS NP_746644.1 26991219 1046220 complement(5148633..5148875) 1 NC_002947.3 hypothetical protein 5148875 1046220 PP_4534 Pseudomonas putida KT2440 hypothetical protein NP_746644.1 5148633 R 160488 CDS NP_746645.1 26991220 1046244 complement(5149460..5151463) 1 NC_002947.3 similar to GP:5738271; identified by sequence similarity; hypothetical protein 5151463 1046244 PP_4535 Pseudomonas putida KT2440 hypothetical protein NP_746645.1 5149460 R 160488 CDS NP_746646.1 26991221 1042123 complement(5153335..5154210) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00950; carboxylate/amino acid/amine transporter 5154210 1042123 PP_4537 Pseudomonas putida KT2440 carboxylate/amino acid/amine transporter NP_746646.1 5153335 R 160488 CDS NP_746647.1 26991222 1046192 complement(5154466..5155065) 1 NC_002947.3 similar to SP:P41407; identified by sequence similarity; NAD(P)H dehydrogenase (quinone) 5155065 1046192 PP_4538 Pseudomonas putida KT2440 NAD(P)H dehydrogenase (quinone) NP_746647.1 5154466 R 160488 CDS NP_746648.1 26991223 1046184 5155540..5156463 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 5156463 1046184 PP_4539 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_746648.1 5155540 D 160488 CDS NP_746649.1 26991224 1043349 5156477..5157289 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01738; alpha/beta hydrolase 5157289 1043349 PP_4540 Pseudomonas putida KT2440 alpha/beta hydrolase NP_746649.1 5156477 D 160488 CDS NP_746650.1 26991225 1046170 5157283..5157840 1 NC_002947.3 identified by match to PFAM protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase A 5157840 ppiA 1046170 ppiA Pseudomonas putida KT2440 peptidyl-prolyl cis-trans isomerase A NP_746650.1 5157283 D 160488 CDS NP_746651.1 26991226 1046131 5157903..5159735 1 NC_002947.3 identified by match to PFAM protein family HMM PF00005; ABC transporter ATP-binding protein/permease 5159735 1046131 PP_4542 Pseudomonas putida KT2440 ABC transporter ATP-binding protein/permease NP_746651.1 5157903 D 160488 CDS NP_746652.1 26991227 1046062 complement(5159841..5161052) 1 NC_002947.3 hypothetical protein 5161052 1046062 PP_4543 Pseudomonas putida KT2440 hypothetical protein NP_746652.1 5159841 R 160488 CDS NP_746653.1 26991228 1046085 5161231..5162475 1 NC_002947.3 hypothetical protein 5162475 1046085 PP_4544 Pseudomonas putida KT2440 hypothetical protein NP_746653.1 5161231 D 160488 CDS NP_746654.1 26991229 1046063 complement(5162676..5163848) 1 NC_002947.3 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 5163848 1046063 PP_4545 Pseudomonas putida KT2440 3-oxoacyl-ACP synthase NP_746654.1 5162676 R 160488 CDS NP_746655.1 26991230 1041594 complement(5163972..5167877) 1 NC_002947.3 similar to GP:9949425, and SP:P43329; identified by sequence similarity; ATP-dependent helicase HrpA 5167877 hrpA 1041594 hrpA Pseudomonas putida KT2440 ATP-dependent helicase HrpA NP_746655.1 5163972 R 160488 CDS NP_746656.1 26991231 1046115 5168381..5169745 1 NC_002947.3 similar to SP:P28787, GB:X68129, and PID:45902; identified by sequence similarity; glutamine synthetase 5169745 1046115 PP_4547 Pseudomonas putida KT2440 glutamine synthetase NP_746656.1 5168381 D 160488 CDS NP_746657.1 26991232 1046080 5169770..5171077 1 NC_002947.3 similar to GB:X65867, GB:S60710, SP:P30566, PID:28904, and PID:28905; identified by sequence similarity; FAD dependent oxidoreductase 5171077 1046080 PP_4548 Pseudomonas putida KT2440 FAD dependent oxidoreductase NP_746657.1 5169770 D 160488 CDS NP_746658.1 26991233 1046084 complement(5171260..5172957) 1 NC_002947.3 activates fatty acids by binding to coenzyme A; involved in the beta-oxidation of n-alkanoic and n-phenylalkanoic acids; long-chain-fatty-acid--CoA ligase 5172957 fadD 1046084 fadD Pseudomonas putida KT2440 long-chain-fatty-acid--CoA ligase NP_746658.1 5171260 R 160488 CDS NP_746659.1 26991234 1046183 complement(5173289..5174977) 1 NC_002947.3 Disruption of the fadD2 gene did not have any effect on the catabolism of acetic, butyric and longer fatty acids (aliphatic or aromatic); however, might be involved in the specific activation of other fatty acids and may be functional when FadD1 is inactivated.; long-chain-fatty-acid--CoA ligase 5174977 fadD2 1046183 fadD2 Pseudomonas putida KT2440 long-chain-fatty-acid--CoA ligase NP_746659.1 5173289 R 160488 CDS NP_746660.1 26991235 1046175 5175196..5176140 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01738; alpha/beta hydrolase 5176140 1046175 PP_4551 Pseudomonas putida KT2440 alpha/beta hydrolase NP_746660.1 5175196 D 160488 CDS NP_746661.1 26991236 1046178 5176175..5176645 1 NC_002947.3 identified by match to PFAM protein family HMM PF01575; acyl dehydratase MaoC 5176645 phaJ1 1046178 phaJ1 Pseudomonas putida KT2440 acyl dehydratase MaoC NP_746661.1 5176175 D 160488 CDS NP_746662.1 26991237 1046186 complement(5176762..5177982) 1 NC_002947.3 ECF subfamily RNA polymerase sigma factor 5177982 1046186 PP_4553 Pseudomonas putida KT2440 ECF subfamily RNA polymerase sigma factor NP_746662.1 5176762 R 160488 CDS NP_746663.1 26991238 1046216 complement(5178000..5178485) 1 NC_002947.3 similar to GP:10173309, and GP:15141407; identified by sequence similarity; activator of Hsp90 ATPase 1 family protein 5178485 1046216 PP_4554 Pseudomonas putida KT2440 activator of Hsp90 ATPase 1 family protein NP_746663.1 5178000 R 160488 CDS NP_746664.1 26991239 1046191 complement(5178507..5178851) 1 NC_002947.3 DGPFAETKE family protein 5178851 1046191 PP_4555 Pseudomonas putida KT2440 DGPFAETKE family protein NP_746664.1 5178507 R 160488 CDS NP_746665.1 26991240 1046215 complement(5178896..5179321) 1 NC_002947.3 similar to GP:14523362; identified by sequence similarity; hypothetical protein 5179321 1046215 PP_4556 Pseudomonas putida KT2440 hypothetical protein NP_746665.1 5178896 R 160488 CDS NP_746666.1 26991241 1046221 complement(5179513..5179770) 1 NC_002947.3 hypothetical protein 5179770 1046221 PP_4557 Pseudomonas putida KT2440 hypothetical protein NP_746666.1 5179513 R 160488 CDS NP_746667.1 26991242 1046342 5180053..5180493 1 NC_002947.3 identified by match to PFAM protein family HMM PF00583; acetyltransferase 5180493 1046342 PP_4558 Pseudomonas putida KT2440 acetyltransferase NP_746667.1 5180053 D 160488 CDS NP_746668.1 26991243 1046247 complement(5180448..5180984) 1 NC_002947.3 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 5180984 def 1046247 def Pseudomonas putida KT2440 peptide deformylase NP_746668.1 5180448 R 160488 CDS NP_746669.1 26991244 1046249 complement(5180984..5181940) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03631; ribonuclease BN 5181940 1046249 PP_4560 Pseudomonas putida KT2440 ribonuclease BN NP_746669.1 5180984 R 160488 CDS NP_746670.1 26991245 1046343 complement(5182094..5182273) 1 NC_002947.3 CsbD family protein 5182273 1046343 PP_4561 Pseudomonas putida KT2440 CsbD family protein NP_746670.1 5182094 R 160488 CDS NP_746671.1 26991246 1046347 5182509..5182889 1 NC_002947.3 hypothetical protein 5182889 1046347 PP_4562 Pseudomonas putida KT2440 hypothetical protein NP_746671.1 5182509 D 160488 CDS NP_746672.1 26991247 1046345 complement(5182895..5183731) 1 NC_002947.3 RNA binding S1 domain-containing protein 5183731 1046345 PP_4563 Pseudomonas putida KT2440 RNA binding S1 domain-containing protein NP_746672.1 5182895 R 160488 CDS NP_746673.1 26991248 1046346 5183862..5184722 1 NC_002947.3 lipoprotein 5184722 1046346 PP_4564 Pseudomonas putida KT2440 lipoprotein NP_746673.1 5183862 D 160488 CDS NP_746674.1 26991249 1042619 complement(5184742..5186457) 1 NC_002947.3 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase 5186457 aceK 1042619 aceK Pseudomonas putida KT2440 bifunctional isocitrate dehydrogenase kinase/phosphatase NP_746674.1 5184742 R 160488 CDS NP_746675.1 26991250 1041671 5186662..5187537 1 NC_002947.3 identified by match to PFAM protein family HMM PF04279; hypothetical protein 5187537 1041671 PP_4566 Pseudomonas putida KT2440 hypothetical protein NP_746675.1 5186662 D 160488 CDS NP_746676.1 26991251 1041736 5187494..5188009 1 NC_002947.3 hypothetical protein 5188009 1041736 PP_4567 Pseudomonas putida KT2440 hypothetical protein NP_746676.1 5187494 D 160488 CDS NP_746677.1 26991252 1041654 complement(5188013..5188894) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04093; hypothetical protein 5188894 1041654 PP_4568 Pseudomonas putida KT2440 hypothetical protein NP_746677.1 5188013 R 160488 CDS NP_746678.1 26991253 1041691 complement(5189010..5189303) 1 NC_002947.3 hypothetical protein 5189303 1041691 PP_4569 Pseudomonas putida KT2440 hypothetical protein NP_746678.1 5189010 R 160488 CDS NP_746679.1 26991254 1041739 complement(5189328..5190263) 1 NC_002947.3 hypothetical protein 5190263 1041739 PP_4570 Pseudomonas putida KT2440 hypothetical protein NP_746679.1 5189328 R 160488 CDS NP_746680.1 26991255 1041687 complement(5190437..5191411) 1 NC_002947.3 similar to SP:P11096; identified by sequence similarity; cysteine synthase A 5191411 cysK 1041687 cysK Pseudomonas putida KT2440 cysteine synthase A NP_746680.1 5190437 R 160488 CDS NP_746681.1 26991256 1041689 5191544..5192617 1 NC_002947.3 similar to GP:9948783; identified by sequence similarity; hypothetical protein 5192617 1041689 PP_4572 Pseudomonas putida KT2440 hypothetical protein NP_746681.1 5191544 D 160488 CDS NP_746682.1 26991257 1042780 5192819..5193664 1 NC_002947.3 identified by match to PFAM protein family HMM PF00004; ATPase AAA 5193664 1042780 PP_4573 Pseudomonas putida KT2440 ATPase AAA NP_746682.1 5192819 D 160488 CDS NP_746683.1 26991258 1041692 5193678..5194856 1 NC_002947.3 hypothetical protein 5194856 1041692 PP_4574 Pseudomonas putida KT2440 hypothetical protein NP_746683.1 5193678 D 160488 CDS NP_746684.1 26991259 1041986 complement(5194909..5195826) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02626; urea amidolyase 5195826 1041986 PP_4575 Pseudomonas putida KT2440 urea amidolyase NP_746684.1 5194909 R 160488 CDS NP_746685.1 26991260 1046038 complement(5195823..5196512) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00370; allophanate hydrolase subunit 1 5196512 1046038 PP_4576 Pseudomonas putida KT2440 allophanate hydrolase subunit 1 NP_746685.1 5195823 R 160488 CDS NP_746686.1 26991261 1046000 complement(5196509..5197285) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03746; LamB/YcsF family protein 5197285 1046000 PP_4577 Pseudomonas putida KT2440 LamB/YcsF family protein NP_746686.1 5196509 R 160488 CDS NP_746687.1 26991262 1046020 complement(5197295..5198581) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00895; major facilitator family transporter 5198581 1046020 PP_4578 Pseudomonas putida KT2440 major facilitator family transporter NP_746687.1 5197295 R 160488 CDS NP_746688.1 26991263 1045079 5198712..5199623 1 NC_002947.3 similar to GB:X02751, GB:L00043, GB:X53291, GB:X53292, GB:X05564, GB:X05565, GB:L00040, GB:L00041, GB:L00042, GB:M10055, GB:K03211, GB:M25898, GB:S68580, GB:X07440, GB:X61282, GB:X00645, SP:P01111, SP:P01112, PID:1335234, PID:1335235, PID:1335236, PID:1335287, PID:190927, PID:190938, PID:35092, PID:35103, PID:465130, PID:553520, PID:553633, PID:553635, PID:553638, PID:825697, and PID:929658; identified by sequence similarity; LysR family transcriptional regulator 5199623 1045079 PP_4579 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_746688.1 5198712 D 160488 CDS NP_746689.1 26991264 1044127 complement(5199696..5200217) 1 NC_002947.3 hypothetical protein 5200217 1044127 PP_4580 Pseudomonas putida KT2440 hypothetical protein NP_746689.1 5199696 R 160488 CDS NP_746690.1 26991265 1045019 complement(5200227..5201000) 1 NC_002947.3 hypothetical protein 5201000 1045019 PP_4581 Pseudomonas putida KT2440 hypothetical protein NP_746690.1 5200227 R 160488 CDS NP_746691.1 26991266 1044133 complement(5201015..5201512) 1 NC_002947.3 hypothetical protein 5201512 1044133 PP_4582 Pseudomonas putida KT2440 hypothetical protein NP_746691.1 5201015 R 160488 CDS NP_746692.1 26991267 1044043 5201692..5203734 1 NC_002947.3 similar to GP:9947241, GB:J03589, GB:M35604, SP:P11441, PID:1203975, PID:340070, GB:J03589, GB:M35604, SP:P11441, PID:1203975, and PID:340070; identified by sequence similarity; oligopeptidase B 5203734 1044043 PP_4583 Pseudomonas putida KT2440 oligopeptidase B NP_746692.1 5201692 D 160488 CDS NP_746693.1 26991268 1041758 5204194..5204565 1 NC_002947.3 similar to GB:M88282, SP:P40200, PID:338672, GB:M88282, SP:P40200, and PID:338672; identified by sequence similarity; hypothetical protein 5204565 1041758 PP_4584 Pseudomonas putida KT2440 hypothetical protein NP_746693.1 5204194 D 160488 CDS NP_746694.1 26991269 1041763 5204637..5205107 1 NC_002947.3 identified by match to PFAM protein family HMM PF00588; RNA methyltransferase 5205107 1041763 PP_4585 Pseudomonas putida KT2440 RNA methyltransferase NP_746694.1 5204637 D 160488 CDS NP_746695.1 26991270 1043857 complement(5205222..5206430) 1 NC_002947.3 hypothetical protein 5206430 1043857 PP_4586 Pseudomonas putida KT2440 hypothetical protein NP_746695.1 5205222 R 160488 CDS NP_746696.1 26991271 1044420 complement(5206472..5206924) 1 NC_002947.3 hypothetical protein 5206924 1044420 PP_4587 Pseudomonas putida KT2440 hypothetical protein NP_746696.1 5206472 R 160488 CDS NP_746697.1 26991272 1043511 5207067..5207660 1 NC_002947.3 similar to GP:10241924; identified by sequence similarity; nitroreductase 5207660 1043511 PP_4588 Pseudomonas putida KT2440 nitroreductase NP_746697.1 5207067 D 160488 CDS NP_746698.1 26991273 1043482 complement(5207774..5208706) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase 5208706 1043482 PP_4589 Pseudomonas putida KT2440 D-isomer specific 2-hydroxyacid dehydrogenase NP_746698.1 5207774 R 160488 CDS NP_746699.1 26991274 1045436 complement(5208709..5209002) 1 NC_002947.3 hypothetical protein 5209002 1045436 PP_4590 Pseudomonas putida KT2440 hypothetical protein NP_746699.1 5208709 R 160488 CDS NP_746700.1 26991275 1045092 complement(5208999..5210132) 1 NC_002947.3 similar to GB:L07518, and PID:292046; identified by sequence similarity; ribonuclease D 5210132 rnd 1045092 rnd Pseudomonas putida KT2440 ribonuclease D NP_746700.1 5208999 R 160488 CDS NP_746701.1 26991276 1044554 complement(5210310..5211947) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02418; hypothetical protein 5211947 1044554 PP_4592 Pseudomonas putida KT2440 hypothetical protein NP_746701.1 5210310 R 160488 CDS NP_746702.1 26991277 1042721 5212198..5212434 1 NC_002947.3 similar to SP:P06695, GB:Z00027, PID:43722, PID:43725, SP:P06695, GB:Z00027, PID:43722, and PID:43725; identified by sequence similarity; hypothetical protein 5212434 1042721 PP_4593 Pseudomonas putida KT2440 hypothetical protein NP_746702.1 5212198 D 160488 CDS NP_746703.1 26991278 1041848 complement(5212528..5213709) 1 NC_002947.3 similar to GP:2641242; identified by sequence similarity; cystathionine gamma-lyase 5213709 1041848 PP_4594 Pseudomonas putida KT2440 cystathionine gamma-lyase NP_746703.1 5212528 R 160488 CDS NP_746704.1 26991279 1042756 5213769..5214263 1 NC_002947.3 identified by match to PFAM protein family HMM PF01037; AsnC family transcriptional regulator 5214263 1042756 PP_4595 Pseudomonas putida KT2440 AsnC family transcriptional regulator NP_746704.1 5213769 D 160488 CDS NP_746705.1 26991280 1041899 complement(5214373..5216703) 1 NC_002947.3 similar to SP:P07658; identified by sequence similarity; molybdopterin oxidoreductase subunit alpha 5216703 1041899 PP_4596 Pseudomonas putida KT2440 molybdopterin oxidoreductase subunit alpha NP_746705.1 5214373 R 160488 CDS NP_746706.1 26991281 1042651 5216926..5217930 1 NC_002947.3 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 5217930 moaA 1042651 moaA Pseudomonas putida KT2440 molybdenum cofactor biosynthesis protein A NP_746706.1 5216926 D 160488 CDS NP_746707.1 26991282 1041713 5217951..5218850 1 NC_002947.3 similar to SP:P32109, GB:U15124, PID:563996, SP:P32109, GB:U15124, and PID:563996; identified by sequence similarity; hypothetical protein 5218850 1041713 PP_4598 Pseudomonas putida KT2440 hypothetical protein NP_746707.1 5217951 D 160488 CDS NP_746708.1 26991283 1041932 5219099..5220064 1 NC_002947.3 similar to GP:7741879; identified by sequence similarity; ISPpu10, transposase 5220064 1041932 PP_4599 Pseudomonas putida KT2440 ISPpu10, transposase NP_746708.1 5219099 D 160488 CDS NP_746709.1 26991284 1042240 complement(5220213..5220731) 1 NC_002947.3 similar to SP:P30746; identified by sequence similarity; molybdenum cofactor biosynthesis protein B 5220731 moaB-2 1042240 moaB-2 Pseudomonas putida KT2440 molybdenum cofactor biosynthesis protein B NP_746709.1 5220213 R 160488 CDS NP_746710.1 26991285 1041690 5220873..5221760 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 5221760 1041690 PP_4601 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_746710.1 5220873 D 160488 CDS NP_746711.1 26991286 1041823 complement(5221748..5222587) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 5222587 1041823 PP_4602 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_746711.1 5221748 R 160488 CDS NP_746712.1 26991287 1042161 complement(5222966..5224294) 1 NC_002947.3 similar to GP:6723233; identified by sequence similarity; ISPpu9, transposase 5224294 1042161 PP_4603 Pseudomonas putida KT2440 ISPpu9, transposase NP_746712.1 5222966 R 160488 CDS NP_746713.1 26991288 1046163 complement(5224673..5225575) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04103; hypothetical protein 5225575 1046163 PP_4604 Pseudomonas putida KT2440 hypothetical protein NP_746713.1 5224673 R 160488 CDS NP_746714.1 26991289 1044608 5225761..5226636 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 5226636 1044608 PP_4605 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_746714.1 5225761 D 160488 CDS NP_746715.1 26991290 1045702 complement(5226666..5229056) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00593; TonB-dependent siderophore receptor 5229056 1045702 PP_4606 Pseudomonas putida KT2440 TonB-dependent siderophore receptor NP_746715.1 5226666 R 160488 CDS NP_746716.1 26991291 1045959 complement(5229232..5230212) 1 NC_002947.3 FecR anti-FecI sigma factor 5230212 1045959 PP_4607 Pseudomonas putida KT2440 FecR anti-FecI sigma factor NP_746716.1 5229232 R 160488 CDS NP_746717.1 26991292 1042203 complement(5230209..5230784) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00140; ECF subfamily RNA polymerase sigma factor 5230784 1042203 PP_4608 Pseudomonas putida KT2440 ECF subfamily RNA polymerase sigma factor NP_746717.1 5230209 R 160488 CDS NP_746718.1 26991293 1042229 complement(5230790..5231116) 1 NC_002947.3 hypothetical protein 5231116 1042229 PP_4609 Pseudomonas putida KT2440 hypothetical protein NP_746718.1 5230790 R 160488 CDS NP_746719.1 26991294 1042401 complement(5231116..5233041) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03977; PepSY-associated TM helix domain-containing protein 5233041 1042401 PP_4610 Pseudomonas putida KT2440 PepSY-associated TM helix domain-containing protein NP_746719.1 5231116 R 160488 CDS NP_746720.1 26991295 1042506 5233135..5233647 1 NC_002947.3 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas aeruginosa this protein may be involved in ferric dicitrate uptake; RNA polymerase sigma factor 5233647 1042506 PP_4611 Pseudomonas putida KT2440 RNA polymerase sigma factor NP_746720.1 5233135 D 160488 CDS NP_746721.1 26991296 1042395 5233644..5234570 1 NC_002947.3 similar to GB:L06139, SP:Q02763, and PID:292824; identified by sequence similarity; FecR protein 5234570 1042395 PP_4612 Pseudomonas putida KT2440 FecR protein NP_746721.1 5233644 D 160488 CDS NP_746722.1 26991297 1041622 5234665..5236989 1 NC_002947.3 similar to GB:Z24721, PID:1147590, PID:394739, and PID:404251; identified by sequence similarity; outer membrane iron(III) dicitrate receptor 5236989 fecA 1041622 fecA Pseudomonas putida KT2440 outer membrane iron(III) dicitrate receptor NP_746722.1 5234665 D 160488 CDS NP_746723.1 26991298 1042558 5237539..5237925 1 NC_002947.3 hypothetical protein 5237925 1042558 PP_4614 Pseudomonas putida KT2440 hypothetical protein NP_746723.1 5237539 D 160488 CDS NP_746724.1 26991299 1041685 complement(5237929..5238399) 1 NC_002947.3 phosphate-starvation-inducible E 5238399 1041685 PP_4615 Pseudomonas putida KT2440 phosphate-starvation-inducible E NP_746724.1 5237929 R 160488 CDS NP_746725.1 26991300 1042589 5238971..5239234 1 NC_002947.3 hypothetical protein 5239234 1042589 PP_4616 Pseudomonas putida KT2440 hypothetical protein NP_746725.1 5238971 D 160488 CDS NP_746726.1 26991301 1042591 complement(5239293..5240312) 1 NC_002947.3 similar to SP:P13154; identified by sequence similarity; leucine dehydrogenase 5240312 1042591 PP_4617 Pseudomonas putida KT2440 leucine dehydrogenase NP_746726.1 5239293 R 160488 CDS NP_746727.1 26991302 1042694 5240437..5241243 1 NC_002947.3 hypothetical protein 5241243 1042694 PP_4618 Pseudomonas putida KT2440 hypothetical protein NP_746727.1 5240437 D 160488 CDS NP_746728.1 26991303 1041608 complement(5241237..5241869) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01262; maleylacetoacetate isomerase 5241869 1041608 PP_4619 Pseudomonas putida KT2440 maleylacetoacetate isomerase NP_746728.1 5241237 R 160488 CDS NP_746729.1 26991304 1044222 complement(5241882..5243174) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01266; fumarylacetoacetase 5243174 1044222 PP_4620 Pseudomonas putida KT2440 fumarylacetoacetase NP_746729.1 5241882 R 160488 CDS NP_746730.1 26991305 1041590 complement(5243178..5244479) 1 NC_002947.3 An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; homogentisate 1,2-dioxygenase 5244479 hmgA 1041590 hmgA Pseudomonas putida KT2440 homogentisate 1,2-dioxygenase NP_746730.1 5243178 R 160488 CDS NP_746731.1 26991306 1045444 5244592..5245425 1 NC_002947.3 identified by match to PFAM protein family HMM PF01614; IclR family transcriptional regulator 5245425 1045444 PP_4622 Pseudomonas putida KT2440 IclR family transcriptional regulator NP_746731.1 5244592 D 160488 CDS NP_746732.1 26991307 1042664 complement(5245356..5248658) 1 NC_002947.3 hypothetical protein 5248658 1042664 PP_4623 Pseudomonas putida KT2440 hypothetical protein NP_746732.1 5245356 R 160488 CDS NP_746733.1 26991308 1043768 complement(5248914..5249813) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01738; alpha/beta hydrolase 5249813 1043768 PP_4624 Pseudomonas putida KT2440 alpha/beta hydrolase NP_746733.1 5248914 R 160488 CDS NP_746734.1 26991309 1042636 complement(5249996..5250682) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04172; LrgB family protein 5250682 1042636 PP_4625 Pseudomonas putida KT2440 LrgB family protein NP_746734.1 5249996 R 160488 CDS NP_746735.1 26991310 1042358 complement(5250672..5251058) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03788; LrgA family protein 5251058 1042358 PP_4626 Pseudomonas putida KT2440 LrgA family protein NP_746735.1 5250672 R 160488 CDS NP_746736.1 26991311 1041996 5251156..5252037 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 5252037 1041996 PP_4627 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_746736.1 5251156 D 160488 CDS NP_746737.1 26991312 1046104 complement(5252059..5252514) 1 NC_002947.3 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 5252514 mioC 1046104 mioC Pseudomonas putida KT2440 flavodoxin NP_746737.1 5252059 R 160488 CDS NP_746738.1 26991313 1041712 5252630..5253058 1 NC_002947.3 similar to GB:L40411, SP:Q15652, and PID:703116; identified by sequence similarity; sensory box protein 5253058 1041712 PP_4629 Pseudomonas putida KT2440 sensory box protein NP_746738.1 5252630 D 160488 CDS NP_746739.1 26991314 1042483 complement(5253720..5254631) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00376; MerR family transcriptional regulator 5254631 1042483 PP_4630 Pseudomonas putida KT2440 MerR family transcriptional regulator NP_746739.1 5253720 R 160488 CDS NP_746740.1 26991315 1042567 5254875..5255435 1 NC_002947.3 hypothetical protein 5255435 1042567 PP_4631 Pseudomonas putida KT2440 hypothetical protein NP_746740.1 5254875 D 160488 CDS NP_746741.1 26991316 1041920 5255469..5256206 1 NC_002947.3 identified by match to PFAM protein family HMM PF00106; short chain dehydrogenase 5256206 1041920 PP_4632 Pseudomonas putida KT2440 short chain dehydrogenase NP_746741.1 5255469 D 160488 CDS NP_746742.1 26991317 1042683 5256216..5256512 1 NC_002947.3 hypothetical protein 5256512 1042683 PP_4633 Pseudomonas putida KT2440 hypothetical protein NP_746742.1 5256216 D 160488 CDS NP_746743.1 26991318 1042246 complement(5256891..5257835) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00561; hypothetical protein 5257835 1042246 PP_4634 Pseudomonas putida KT2440 hypothetical protein NP_746743.1 5256891 R 160488 CDS NP_746744.1 26991319 1045719 complement(5257943..5259154) 1 NC_002947.3 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 5259154 1045719 PP_4635 Pseudomonas putida KT2440 trans-2-enoyl-CoA reductase NP_746744.1 5257943 R 160488 CDS NP_746745.1 26991320 1042451 5259457..5260635 1 NC_002947.3 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 5260635 1042451 PP_4636 Pseudomonas putida KT2440 acetyl-CoA acetyltransferase NP_746745.1 5259457 D 160488 CDS NP_746746.1 26991321 1043831 complement(5260774..5261598) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01371; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 5261598 1043831 PP_4637 Pseudomonas putida KT2440 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase NP_746746.1 5260774 R 160488 CDS NP_746747.1 26991322 1043130 5261826..5263313 1 NC_002947.3 identified by match to PFAM protein family HMM PF02219; methylenetetrahydrofolate reductase domain-containing protein 5263313 1043130 PP_4638 Pseudomonas putida KT2440 methylenetetrahydrofolate reductase domain-containing protein NP_746747.1 5261826 D 160488 CDS NP_746748.1 26991323 1045441 complement(5263273..5264244) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02492; CobW/P47K family protein 5264244 1045441 PP_4639 Pseudomonas putida KT2440 CobW/P47K family protein NP_746748.1 5263273 R 160488 CDS NP_746749.1 26991324 1041974 complement(5264328..5264525) 1 NC_002947.3 hypothetical protein 5264525 1041974 PP_4640 Pseudomonas putida KT2440 hypothetical protein NP_746749.1 5264328 R 160488 CDS NP_746750.1 26991325 1041584 complement(5264543..5266609) 1 NC_002947.3 similar to GP:7741957; identified by sequence similarity; carbon starvation protein CstA 5266609 cstA 1041584 cstA Pseudomonas putida KT2440 carbon starvation protein CstA NP_746750.1 5264543 R 160488 CDS NP_746751.1 26991326 1042039 5266763..5267149 1 NC_002947.3 type IV pilus assembly PilZ 5267149 1042039 PP_4642 Pseudomonas putida KT2440 type IV pilus assembly PilZ NP_746751.1 5266763 D 160488 CDS NP_746752.1 26991327 1042015 5267413..5268930 1 NC_002947.3 similar to SP:Q46821; identified by sequence similarity; xanthine/uracil permease 5268930 1042015 PP_4643 Pseudomonas putida KT2440 xanthine/uracil permease NP_746752.1 5267413 D 160488 CDS NP_746753.1 26991328 1041864 complement(5268966..5270336) 1 NC_002947.3 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 5270336 radA 1041864 radA Pseudomonas putida KT2440 DNA repair protein RadA NP_746753.1 5268966 R 160488 CDS NP_746754.1 26991329 1043039 5270513..5270932 1 NC_002947.3 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 5270932 mscL 1043039 mscL Pseudomonas putida KT2440 large-conductance mechanosensitive channel NP_746754.1 5270513 D 160488 CDS NP_746755.1 26991330 1042143 complement(5271056..5271832) 1 NC_002947.3 similar to SP:P28861; identified by sequence similarity; oxidoreductase FAD/NAD(P)-binding domain-containing protein 5271832 1042143 PP_4646 Pseudomonas putida KT2440 oxidoreductase FAD/NAD(P)-binding domain-containing protein NP_746755.1 5271056 R 160488 CDS NP_746756.1 26991331 1046148 5271916..5272755 1 NC_002947.3 identified by match to PFAM protein family HMM PF03472; LuxR family transcriptional regulator 5272755 1046148 PP_4647 Pseudomonas putida KT2440 LuxR family transcriptional regulator NP_746756.1 5271916 D 160488 CDS NP_746757.1 26991332 1046256 5272852..5273976 1 NC_002947.3 identified by match to PFAM protein family HMM PF03602; rRNA (guanine-N(2)-)-methyltransferase 5273976 1046256 PP_4648 Pseudomonas putida KT2440 rRNA (guanine-N(2)-)-methyltransferase NP_746757.1 5272852 D 160488 CDS NP_746758.1 26991333 1046271 complement(5274082..5274237) 1 NC_002947.3 hypothetical protein 5274237 1046271 PP_4649 Pseudomonas putida KT2440 hypothetical protein NP_746758.1 5274082 R 160488 CDS NP_746759.1 26991334 1042538 complement(5274247..5275254) 1 NC_002947.3 similar to GB:M86697, and PID:150672; identified by sequence similarity; cytochrome d ubiquinol oxidase subunit II 5275254 cioB 1042538 cioB Pseudomonas putida KT2440 cytochrome d ubiquinol oxidase subunit II NP_746759.1 5274247 R 160488 CDS NP_746760.1 26991335 1043772 complement(5275258..5276694) 1 NC_002947.3 similar to GB:M86697, PID:150672, GB:M86697, and PID:150672; identified by sequence similarity; ubiquinol oxidase subunit I, cyanide insensitive 5276694 cioA 1043772 cioA Pseudomonas putida KT2440 ubiquinol oxidase subunit I, cyanide insensitive NP_746760.1 5275258 R 160488 CDS NP_746761.1 26991336 1043346 5277038..5278258 1 NC_002947.3 similar to GP:9950874; identified by sequence similarity; major facilitator superfamily protein 5278258 1043346 PP_4652 Pseudomonas putida KT2440 major facilitator superfamily protein NP_746761.1 5277038 D 160488 CDS NP_746762.1 26991337 1041775 5278488..5279783 1 NC_002947.3 similar to GP:6624219, GB:X66403, SP:Q04844, and PID:560153; identified by sequence similarity; xanthine/uracil/vitamin C permease 5279783 1041775 PP_4653 Pseudomonas putida KT2440 xanthine/uracil/vitamin C permease NP_746762.1 5278488 D 160488 CDS NP_746763.1 26991338 1043741 5279780..5280865 1 NC_002947.3 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 5280865 trmA 1043741 trmA Pseudomonas putida KT2440 tRNA (uracil-5-)-methyltransferase NP_746763.1 5279780 D 160488 CDS NP_746764.1 26991339 1043359 complement(5281003..5281608) 1 NC_002947.3 similar to SP:P00436, GB:M33317, SP:P11509, SP:P20853, PID:181270, and PID:825700; identified by sequence similarity; protocatechuate 3,4-dioxygenase subunit alpha 5281608 pcaG 1043359 pcaG Pseudomonas putida KT2440 protocatechuate 3,4-dioxygenase subunit alpha NP_746764.1 5281003 R 160488 CDS NP_746765.1 26991340 1041888 complement(5281619..5282338) 1 NC_002947.3 similar to SP:P00437, GB:M30496, SP:P15374, and PID:340074; identified by sequence similarity; protocatechuate 3,4-dioxygenase subunit beta 5282338 pcaH 1041888 pcaH Pseudomonas putida KT2440 protocatechuate 3,4-dioxygenase subunit beta NP_746765.1 5281619 R 160488 CDS NP_746766.1 26991341 1041922 5282472..5283422 1 NC_002947.3 similar to GP:9950976, and GP:9950976; identified by sequence similarity; metallopeptidase, zinc binding 5283422 1041922 PP_4657 Pseudomonas putida KT2440 metallopeptidase, zinc binding NP_746766.1 5282472 D 160488 CDS NP_746767.1 26991342 1042609 5283594..5285513 1 NC_002947.3 identified by match to PFAM protein family HMM PF03586; methyl-accepting chemotaxis sensory transducer 5285513 1042609 PP_4658 Pseudomonas putida KT2440 methyl-accepting chemotaxis sensory transducer NP_746767.1 5283594 D 160488 CDS NP_746768.1 26991343 1041905 complement(5285636..5287303) 1 NC_002947.3 similar to GB:X62083, GB:M80613, SP:P25440, PID:1370115, PID:182769, PID:2181873, PID:2181875, PID:31472, and PID:577293; identified by sequence similarity; gamma-glutamyltransferase 5287303 ggt-2 1041905 ggt-2 Pseudomonas putida KT2440 gamma-glutamyltransferase NP_746768.1 5285636 R 160488 CDS NP_746769.1 26991344 1042047 complement(5287421..5288317) 1 NC_002947.3 similar to GP:9947848; identified by sequence similarity; LysR family transcriptional regulator 5288317 1042047 PP_4660 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_746769.1 5287421 R 160488 CDS NP_746770.1 26991345 1041831 complement(5288501..5289172) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02525; NAD(P)H dehydrogenase (quinone) 5289172 1041831 PP_4661 Pseudomonas putida KT2440 NAD(P)H dehydrogenase (quinone) NP_746770.1 5288501 R 160488 CDS NP_746771.1 26991346 1042027 5289255..5289569 1 NC_002947.3 similar to GB:M69197, GB:X00442, GB:L29394, GB:K01763, GB:X00637, GB:X01793, GB:X01786, GB:X02206, GB:X01789, GB:X01791, GB:X00606, GB:M13908, GB:K00422, GB:M12387, GB:M10935, SP:P00737, SP:P00738, PID:1212947, PID:306880, PID:758071, GB:M69197, GB:X00442, GB:L29394, GB:K01763, GB:X00637, GB:X01793, GB:X01786, GB:X02206, GB:X01789, GB:X01791, GB:X00606, GB:M13908, GB:K00422, GB:M12387, GB:M10935, SP:P00737, SP:P00738, PID:1212947, PID:306880, and PID:758071; identified by sequence similarity; antibiotic biosynthesis monooxygenase 5289569 1042027 PP_4662 Pseudomonas putida KT2440 antibiotic biosynthesis monooxygenase NP_746771.1 5289255 D 160488 CDS NP_746772.1 26991347 1045216 complement(5289559..5290323) 1 NC_002947.3 hypothetical protein 5290323 1045216 PP_4663 Pseudomonas putida KT2440 hypothetical protein NP_746772.1 5289559 R 160488 CDS NP_746773.1 26991348 1041906 5290401..5291282 1 NC_002947.3 similar to GP:3419687; identified by sequence similarity; LysR family transcriptional regulator 5291282 1041906 PP_4664 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_746773.1 5290401 D 160488 CDS NP_746774.1 26991349 1041979 5291424..5291768 1 NC_002947.3 hypothetical protein 5291768 1041979 PP_4665 Pseudomonas putida KT2440 hypothetical protein NP_746774.1 5291424 D 160488 CDS NP_746775.1 26991350 1041909 complement(5291960..5292847) 1 NC_002947.3 similar to GB:X16396, SP:P13995, and PID:35071; identified by sequence similarity; 3-hydroxyisobutyrate dehydrogenase 5292847 mmsB 1041909 mmsB Pseudomonas putida KT2440 3-hydroxyisobutyrate dehydrogenase NP_746775.1 5291960 R 160488 CDS NP_746776.1 26991351 1045894 complement(5292858..5294384) 1 NC_002947.3 similar to GP:7160985, and SP:P28810; identified by sequence similarity; methylmalonate-semialdehyde dehydrogenase 5294384 mmsA-2 1045894 mmsA-2 Pseudomonas putida KT2440 methylmalonate-semialdehyde dehydrogenase NP_746776.1 5292858 R 160488 CDS NP_746777.1 26991352 1045409 5294517..5295467 1 NC_002947.3 similar to GP:9948295; identified by sequence similarity; LysR family transcriptional regulator 5295467 1045409 PP_4668 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_746777.1 5294517 D 160488 CDS NP_746778.1 26991353 1045078 complement(5295593..5296111) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00691; OmpA/MotB domain-containing protein 5296111 1045078 PP_4669 Pseudomonas putida KT2440 OmpA/MotB domain-containing protein NP_746778.1 5295593 R 160488 CDS NP_746779.1 26991354 1041910 complement(5296089..5297360) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00990; diguanylate cyclase 5297360 1041910 PP_4670 Pseudomonas putida KT2440 diguanylate cyclase NP_746779.1 5296089 R 160488 CDS NP_746780.1 26991355 1042478 complement(5297357..5297923) 1 NC_002947.3 hypothetical protein 5297923 1042478 PP_4671 Pseudomonas putida KT2440 hypothetical protein NP_746780.1 5297357 R 160488 CDS NP_746781.1 26991356 1041840 complement(5298024..5300099) 1 NC_002947.3 similar to GB:J02938, GB:U13680, GB:X15954, GB:X15957, SP:P07864, PID:187074, PID:307120, and PID:535360; identified by sequence similarity; exodeoxyribonuclease V subunit alpha 5300099 recD 1041840 recD Pseudomonas putida KT2440 exodeoxyribonuclease V subunit alpha NP_746781.1 5298024 R 160488 CDS NP_746782.1 26991357 1041961 complement(5300096..5303770) 1 NC_002947.3 similar to GB:L13857, and PID:306778; identified by sequence similarity; exodeoxyribonuclease V subunit beta 5303770 recB 1041961 recB Pseudomonas putida KT2440 exodeoxyribonuclease V subunit beta NP_746782.1 5300096 R 160488 CDS NP_746783.1 26991358 1045224 complement(5303767..5307249) 1 NC_002947.3 similar to GB:M68516, GB:S69366, GB:S69363, GB:S69364, GB:S69574, GB:S69365, GB:J02639, GB:S58545, GB:U35464, SP:P05154, PID:1144561, PID:180550, and PID:189678; identified by sequence similarity; exodeoxyribonuclease V subunit gamma 5307249 recC 1045224 recC Pseudomonas putida KT2440 exodeoxyribonuclease V subunit gamma NP_746783.1 5303767 R 160488 CDS NP_746784.1 26991359 1045171 complement(5313393..5313986) 1 NC_002947.3 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ 5313986 1045171 PP_4675 Pseudomonas putida KT2440 sulfite oxidase subunit YedZ NP_746784.1 5313393 R 160488 CDS NP_746785.1 26991360 1044253 complement(5313986..5315011) 1 NC_002947.3 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY 5315011 1044253 PP_4676 Pseudomonas putida KT2440 sulfite oxidase subunit YedY NP_746785.1 5313986 R 160488 CDS NP_746786.1 26991361 1041981 complement(5315079..5315930) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03653; CDP-diacylglycerol--serine O-phosphatidyltransferase 5315930 pssA-2 1041981 pssA-2 Pseudomonas putida KT2440 CDP-diacylglycerol--serine O-phosphatidyltransferase NP_746786.1 5315079 R 160488 CDS NP_746787.1 26991362 1041985 complement(5316081..5317097) 1 NC_002947.3 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 5317097 ilvC 1041985 ilvC Pseudomonas putida KT2440 ketol-acid reductoisomerase NP_746787.1 5316081 R 160488 CDS NP_746788.1 26991363 1044684 complement(5317154..5317645) 1 NC_002947.3 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 5317645 ilvH 1044684 ilvH Pseudomonas putida KT2440 acetolactate synthase 3 regulatory subunit NP_746788.1 5317154 R 160488 CDS NP_746789.1 26991364 1041966 complement(5317647..5319371) 1 NC_002947.3 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit; acetolactate synthase 3 catalytic subunit 5319371 ilvB 1041966 ilvB Pseudomonas putida KT2440 acetolactate synthase 3 catalytic subunit NP_746789.1 5317647 R 160488 CDS NP_746790.1 26991365 1042017 complement(5319780..5320115) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04287; hypothetical protein 5320115 1042017 PP_4681 Pseudomonas putida KT2440 hypothetical protein NP_746790.1 5319780 R 160488 CDS NP_746791.1 26991366 1044656 complement(5320112..5320912) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00515; hypothetical protein 5320912 1044656 PP_4682 Pseudomonas putida KT2440 hypothetical protein NP_746791.1 5320112 R 160488 CDS NP_746792.1 26991367 1044197 complement(5320928..5323249) 1 NC_002947.3 similar to SP:P02919; identified by sequence similarity; penicillin-binding protein 1B 5323249 mrcB 1044197 mrcB Pseudomonas putida KT2440 penicillin-binding protein 1B NP_746792.1 5320928 R 160488 CDS NP_746793.1 26991368 1041841 5323419..5324927 1 NC_002947.3 hypothetical protein 5324927 1041841 PP_4684 Pseudomonas putida KT2440 hypothetical protein NP_746793.1 5323419 D 160488 CDS NP_746794.1 26991369 1045225 5325086..5325364 1 NC_002947.3 similar to GP:9950961; identified by sequence similarity; hypothetical protein 5325364 1045225 PP_4685 Pseudomonas putida KT2440 hypothetical protein NP_746794.1 5325086 D 160488 CDS NP_746795.1 26991370 1042034 complement(5325545..5326429) 1 NC_002947.3 similar to GP:9950963; identified by sequence similarity; hypothetical protein 5326429 1042034 PP_4686 Pseudomonas putida KT2440 hypothetical protein NP_746795.1 5325545 R 160488 CDS NP_746796.1 26991371 1042001 complement(5326532..5327299) 1 NC_002947.3 with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 5327299 hmuV 1042001 hmuV Pseudomonas putida KT2440 hemin importer ATP-binding subunit NP_746796.1 5326532 R 160488 CDS NP_746797.1 26991372 1045897 complement(5327299..5328336) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04133; transport system permease 5328336 1045897 PP_4688 Pseudomonas putida KT2440 transport system permease NP_746797.1 5327299 R 160488 CDS NP_746798.1 26991373 1045844 complement(5328333..5329217) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01497; hypothetical protein 5329217 1045844 PP_4689 Pseudomonas putida KT2440 hypothetical protein NP_746798.1 5328333 R 160488 CDS NP_746799.1 26991374 1044139 5329366..5329710 1 NC_002947.3 identified by match to PFAM protein family HMM PF00355; 2Fe-2S protein 5329710 1044139 PP_4690 Pseudomonas putida KT2440 2Fe-2S protein NP_746799.1 5329366 D 160488 CDS NP_746800.1 26991375 1044194 complement(5329673..5330386) 1 NC_002947.3 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 5330386 sfsA 1044194 sfsA Pseudomonas putida KT2440 sugar fermentation stimulation protein A NP_746800.1 5329673 R 160488 CDS NP_746801.1 26991376 1043754 complement(5330386..5331558) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00155; hypothetical protein 5331558 1043754 PP_4692 Pseudomonas putida KT2440 hypothetical protein NP_746801.1 5330386 R 160488 CDS NP_746802.1 26991377 1045879 5331769..5332215 1 NC_002947.3 identified by match to PFAM protein family HMM PF01258; C4-type zinc finger DksA/TraR family protein 5332215 1045879 PP_4693 Pseudomonas putida KT2440 C4-type zinc finger DksA/TraR family protein NP_746802.1 5331769 D 160488 CDS NP_746803.1 26991378 1043052 5332264..5333166 1 NC_002947.3 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase 5333166 1043052 PP_4694 Pseudomonas putida KT2440 glutamyl-Q tRNA(Asp) synthetase NP_746803.1 5332264 D 160488 CDS NP_746804.1 26991379 1044374 5333569..5336544 1 NC_002947.3 identified by match to PFAM protein family HMM PF04306; multi-sensor signal transduction histidine kinase 5336544 1044374 PP_4695 Pseudomonas putida KT2440 multi-sensor signal transduction histidine kinase NP_746804.1 5333569 D 160488 CDS NP_746805.1 26991380 1044198 5336549..5337991 1 NC_002947.3 identified by match to PFAM protein family HMM PF00072; Fis family transcriptional regulator 5337991 1044198 PP_4696 Pseudomonas putida KT2440 Fis family transcriptional regulator NP_746805.1 5336549 D 160488 CDS NP_746806.1 26991381 1045263 5338771..5340153 1 NC_002947.3 similar to GP:3650360, and SP:P13685; identified by sequence similarity; poly(A) polymerase 5340153 pcnB 1045263 pcnB Pseudomonas putida KT2440 poly(A) polymerase NP_746806.1 5338771 D 160488 CDS NP_746807.1 26991382 1045101 5340150..5340629 1 NC_002947.3 similar to SP:O87790, and SP:O87790; identified by sequence similarity; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 5340629 folK-2 1045101 folK-2 Pseudomonas putida KT2440 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase NP_746807.1 5340150 D 160488 CDS NP_746808.1 26991383 1041965 5340892..5341692 1 NC_002947.3 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 5341692 panB 1041965 panB Pseudomonas putida KT2440 3-methyl-2-oxobutanoate hydroxymethyltransferase NP_746808.1 5340892 D 160488 CDS NP_746809.1 26991384 1042036 5341689..5342552 1 NC_002947.3 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 5342552 panC 1042036 panC Pseudomonas putida KT2440 pantoate--beta-alanine ligase NP_746809.1 5341689 D 160488 CDS NP_746810.1 26991385 1045885 5342759..5344423 1 NC_002947.3 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 5344423 pgi 1045885 pgi Pseudomonas putida KT2440 glucose-6-phosphate isomerase NP_746810.1 5342759 D 160488 CDS NP_746811.1 26991386 1041843 5344601..5346535 1 NC_002947.3 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 5346535 acsB 1041843 acsB Pseudomonas putida KT2440 acetyl-CoA synthetase NP_746811.1 5344601 D 160488 CDS NP_746812.1 26991387 1041870 5346577..5347446 1 NC_002947.3 hypothetical protein 5347446 1041870 PP_4703 Pseudomonas putida KT2440 hypothetical protein NP_746812.1 5346577 D 160488 CDS NP_746813.1 26991388 1042000 5347525..5350461 1 NC_002947.3 hypothetical protein 5350461 1042000 PP_4704 Pseudomonas putida KT2440 hypothetical protein NP_746813.1 5347525 D 160488 CDS NP_746814.1 26991389 1043845 complement(5350543..5350956) 1 NC_002947.3 similar to GP:9949526, and SP:P47243; identified by sequence similarity; glyoxalase/bleomycin resistance protein/dioxygenase 5350956 1043845 PP_4705 Pseudomonas putida KT2440 glyoxalase/bleomycin resistance protein/dioxygenase NP_746814.1 5350543 R 160488 CDS NP_746815.1 26991390 1043478 5351017..5351319 1 NC_002947.3 identified by match to PFAM protein family HMM PF02619; antibiotic biosynthesis monooxygenase 5351319 1043478 PP_4706 Pseudomonas putida KT2440 antibiotic biosynthesis monooxygenase NP_746815.1 5351017 D 160488 CDS NP_746816.1 26991391 1041940 complement(5351395..5351745) 1 NC_002947.3 similar to GB:M18731, and PID:182949; identified by sequence similarity; transport-associated protein 5351745 1041940 PP_4707 Pseudomonas putida KT2440 transport-associated protein NP_746816.1 5351395 R 160488 CDS NP_746817.1 26991392 1045958 complement(5352009..5354114) 1 NC_002947.3 similar to SP:O87792, and SP:P05055; identified by sequence similarity; polynucleotide phosphorylase 5354114 pnp 1045958 pnp Pseudomonas putida KT2440 polynucleotide phosphorylase NP_746817.1 5352009 R 160488 CDS NP_746818.2 161378121 1043991 complement(5354365..5354634) 1 NC_002947.3 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 5354634 rpsO 1043991 rpsO Pseudomonas putida KT2440 30S ribosomal protein S15 NP_746818.2 5354365 R 160488 CDS NP_746819.1 26991394 1043934 complement(5355703..5356101) 1 NC_002947.3 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 5356101 rbfA 1043934 rbfA Pseudomonas putida KT2440 ribosome-binding factor A NP_746819.1 5355703 R 160488 CDS NP_746820.1 26991395 1042494 complement(5356218..5358758) 1 NC_002947.3 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 5358758 infB 1042494 infB Pseudomonas putida KT2440 translation initiation factor IF-2 NP_746820.1 5356218 R 160488 CDS NP_746821.1 26991396 1042024 complement(5358786..5360267) 1 NC_002947.3 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 5360267 nusA 1042024 nusA Pseudomonas putida KT2440 transcription elongation factor NusA NP_746821.1 5358786 R 160488 CDS NP_746822.1 26991397 1041880 complement(5360327..5360836) 1 NC_002947.3 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 5360836 1041880 PP_4714 Pseudomonas putida KT2440 hypothetical protein NP_746822.1 5360327 R 160488 CDS NP_746823.1 26991398 1042365 complement(5361602..5362357) 1 NC_002947.3 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 5362357 tpiA 1042365 tpiA Pseudomonas putida KT2440 triosephosphate isomerase NP_746823.1 5361602 R 160488 CDS NP_746824.1 26991399 1043206 complement(5362423..5363763) 1 NC_002947.3 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 5363763 glmM 1043206 glmM Pseudomonas putida KT2440 phosphoglucosamine mutase NP_746824.1 5362423 R 160488 CDS NP_746825.1 26991400 1042366 complement(5363780..5364631) 1 NC_002947.3 similar to SP:P26282, and SP:P26282; identified by sequence similarity; dihydropteroate synthase 5364631 folP 1042366 folP Pseudomonas putida KT2440 dihydropteroate synthase NP_746825.1 5363780 R 160488 CDS NP_746826.1 26991401 1045877 complement(5364640..5366553) 1 NC_002947.3 similar to GB:M15502, SP:P07954, PID:1545996, and PID:182794; identified by sequence similarity; ATP-dependent metalloprotease FtsH 5366553 ftsH 1045877 ftsH Pseudomonas putida KT2440 ATP-dependent metalloprotease FtsH NP_746826.1 5364640 R 160488 CDS NP_746827.1 26991402 1043387 complement(5366751..5367374) 1 NC_002947.3 similar to GB:M64351, GB:L26244, GB:X57727, GB:M62379, and PID:339359; identified by sequence similarity; ribosomal RNA methyltransferase RrmJ/FtsJ 5367374 rrmJ 1043387 rrmJ Pseudomonas putida KT2440 ribosomal RNA methyltransferase RrmJ/FtsJ NP_746827.1 5366751 R 160488 CDS NP_746828.1 26991403 1043016 5367402..5367785 1 NC_002947.3 similar to GB:X65584, PID:39092, PID:1480839, GB:X65584, PID:39092, and PID:1480839; identified by sequence similarity; hypothetical protein 5367785 1043016 PP_4720 Pseudomonas putida KT2440 hypothetical protein NP_746828.1 5367402 D 160488 CDS NP_746829.1 26991404 1043343 complement(5367798..5368268) 1 NC_002947.3 hypothetical protein 5368268 1043343 PP_4721 Pseudomonas putida KT2440 hypothetical protein NP_746829.1 5367798 R 160488 CDS NP_746830.1 26991405 1045262 complement(5368225..5368707) 1 NC_002947.3 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 5368707 greA 1045262 greA Pseudomonas putida KT2440 transcription elongation factor GreA NP_746830.1 5368225 R 160488 CDS NP_746831.2 161378120 1042416 complement(5368704..5371925) 1 NC_002947.3 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 5371925 carB 1042416 carB Pseudomonas putida KT2440 carbamoyl phosphate synthase large subunit NP_746831.2 5368704 R 160488 CDS NP_746832.1 26991407 1041946 complement(5372031..5373167) 1 NC_002947.3 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 5373167 carA 1041946 carA Pseudomonas putida KT2440 carbamoyl phosphate synthase small subunit NP_746832.1 5372031 R 160488 CDS NP_746833.1 26991408 1043973 complement(5373494..5374297) 1 NC_002947.3 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 5374297 dapB 1043973 dapB Pseudomonas putida KT2440 dihydrodipicolinate reductase NP_746833.1 5373494 R 160488 CDS NP_746834.1 26991409 1041678 complement(5374311..5375438) 1 NC_002947.3 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 5375438 dnaJ 1041678 dnaJ Pseudomonas putida KT2440 molecular chaperone DnaJ NP_746834.1 5374311 R 160488 CDS NP_746835.1 26991410 1046079 complement(5375637..5377562) 1 NC_002947.3 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 5377562 dnaK 1046079 dnaK Pseudomonas putida KT2440 molecular chaperone DnaK NP_746835.1 5375637 R 160488 CDS NP_746836.1 26991411 1042995 complement(5377664..5378221) 1 NC_002947.3 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 5378221 grpE 1042995 grpE Pseudomonas putida KT2440 heat shock protein GrpE NP_746836.1 5377664 R 160488 CDS NP_746837.1 26991412 1043650 5378414..5380087 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00634; DNA repair protein RecN 5380087 recN 1043650 recN Pseudomonas putida KT2440 DNA repair protein RecN NP_746837.1 5378414 D 160488 CDS NP_746838.1 26991413 1043079 complement(5380195..5380599) 1 NC_002947.3 similar to GB:U09067, PID:483876, PID:553456, GB:U09067, PID:483876, and PID:553456; identified by sequence similarity; Fur family ferric uptake regulator 5380599 fur 1043079 fur Pseudomonas putida KT2440 Fur family ferric uptake regulator NP_746838.1 5380195 R 160488 CDS NP_746839.1 26991414 1042313 5380697..5381233 1 NC_002947.3 similar to SP:O68564; identified by sequence similarity; SmpA/OmlA domain-containing protein 5381233 omlA 1042313 omlA Pseudomonas putida KT2440 SmpA/OmlA domain-containing protein NP_746839.1 5380697 D 160488 CDS NP_746840.1 26991415 1045268 complement(5381298..5381846) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03654; cyclase 5381846 1045268 PP_4732 Pseudomonas putida KT2440 cyclase NP_746840.1 5381298 R 160488 CDS NP_746841.1 26991416 1042980 5381896..5382378 1 NC_002947.3 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 5382378 smpB 1042980 smpB Pseudomonas putida KT2440 SsrA-binding protein NP_746841.1 5381896 D 160488 CDS NP_746842.1 26991417 1043143 complement(5382511..5383278) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00392; GntR family transcriptional regulator 5383278 1043143 PP_4734 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_746842.1 5382511 R 160488 CDS NP_746843.1 26991418 1045884 5383535..5385205 1 NC_002947.3 identified by match to PFAM protein family HMM PF03977; L-lactate transport 5385205 lctP 1045884 lctP Pseudomonas putida KT2440 L-lactate transport NP_746843.1 5383535 D 160488 CDS NP_746844.1 26991419 1043044 5385268..5386413 1 NC_002947.3 flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 5386413 lldD 1043044 lldD Pseudomonas putida KT2440 L-lactate dehydrogenase NP_746844.1 5385268 D 160488 CDS NP_746845.1 26991420 1042275 5386489..5389299 1 NC_002947.3 identified by match to PFAM protein family HMM PF02913; D-lactate dehydrogenase 5389299 1042275 PP_4737 Pseudomonas putida KT2440 D-lactate dehydrogenase NP_746845.1 5386489 D 160488 CDS NP_746846.1 26991421 1042279 5389619..5389909 1 NC_002947.3 similar to GP:9948479; identified by sequence similarity; hypothetical protein 5389909 1042279 PP_4738 Pseudomonas putida KT2440 hypothetical protein NP_746846.1 5389619 D 160488 CDS NP_746847.1 26991422 1042985 5390767..5391009 1 NC_002947.3 similar to GP:3881569; identified by sequence similarity; hypothetical protein 5391009 1042985 PP_4739 Pseudomonas putida KT2440 hypothetical protein NP_746847.1 5390767 D 160488 CDS NP_746848.1 26991423 1043007 5393057..5395420 1 NC_002947.3 similar to GB:J04569, GB:M26638, SP:P14136, PID:183075, PID:553302, GB:J04569, GB:M26638, SP:P14136, PID:183075, and PID:553302; identified by sequence similarity; type I restriction-modification system, R subunit 5395420 hsdR 1043007 hsdR Pseudomonas putida KT2440 type I restriction-modification system, R subunit NP_746848.1 5393057 D 160488 CDS NP_746849.1 26991424 1045919 5395521..5396990 1 NC_002947.3 similar to GB:U12011; identified by sequence similarity; type I restriction-modification system, M subunit 5396990 hsdM 1045919 hsdM Pseudomonas putida KT2440 type I restriction-modification system, M subunit NP_746849.1 5395521 D 160488 CDS NP_746850.1 26991425 1042031 5396987..5398717 1 NC_002947.3 similar to SP:P19705, and SP:P19705; identified by sequence similarity; type I restriction-modification system subunit S 5398717 hsdS 1042031 hsdS Pseudomonas putida KT2440 type I restriction-modification system subunit S NP_746850.1 5396987 D 160488 CDS NP_746851.1 26991426 1045098 5399186..5400622 1 NC_002947.3 hypothetical protein 5400622 1045098 PP_4743 Pseudomonas putida KT2440 hypothetical protein NP_746851.1 5399186 D 160488 CDS NP_746852.1 26991427 1045235 complement(5401790..5403322) 1 NC_002947.3 similar to GP:8037785, and GP:8037785; identified by sequence similarity; ISPpu15, transposase Orf2 5403322 1045235 PP_4745 Pseudomonas putida KT2440 ISPpu15, transposase Orf2 NP_746852.1 5401790 R 160488 CDS NP_746853.1 26991428 1043084 complement(5403341..5403700) 1 NC_002947.3 similar to GP:5824138, and GP:8037784; identified by sequence similarity; ISPpu15, transposase Orf1 5403700 1043084 PP_4746 Pseudomonas putida KT2440 ISPpu15, transposase Orf1 NP_746853.1 5403341 R 160488 CDS NP_746854.1 26991429 1045252 complement(5404417..5405217) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00497; amino acid ABC transporter substrate-binding protein 5405217 1045252 PP_4748 Pseudomonas putida KT2440 amino acid ABC transporter substrate-binding protein NP_746854.1 5404417 R 160488 CDS NP_746855.1 26991430 1045904 complement(5405308..5405967) 1 NC_002947.3 similar to GB:L24552, SP:P41109, and PID:404080; identified by sequence similarity; amino acid ABC transporter permease 5405967 1045904 PP_4749 Pseudomonas putida KT2440 amino acid ABC transporter permease NP_746855.1 5405308 R 160488 CDS NP_746856.1 26991431 1041949 complement(5405964..5406605) 1 NC_002947.3 similar to GB:L24552, SP:P41109, and PID:404080; identified by sequence similarity; amino acid ABC transporter permease 5406605 1041949 PP_4750 Pseudomonas putida KT2440 amino acid ABC transporter permease NP_746856.1 5405964 R 160488 CDS NP_746857.1 26991432 1042231 complement(5406605..5407414) 1 NC_002947.3 similar to SP:P35651, and PID:550405; identified by sequence similarity; amino acid ABC transporter ATP-binding protein 5407414 1042231 PP_4751 Pseudomonas putida KT2440 amino acid ABC transporter ATP-binding protein NP_746857.1 5406605 R 160488 CDS NP_746858.1 26991433 1041847 complement(5407428..5408735) 1 NC_002947.3 similar to GP:3372642; identified by sequence similarity; aminopeptidase 5408735 1041847 PP_4752 Pseudomonas putida KT2440 aminopeptidase NP_746858.1 5407428 R 160488 CDS NP_746859.1 26991434 1046265 complement(5408837..5410873) 1 NC_002947.3 similar to SP:O87278, and SP:O87278; identified by sequence similarity; N-methylproline demethylase 5410873 1046265 PP_4753 Pseudomonas putida KT2440 N-methylproline demethylase NP_746859.1 5408837 R 160488 CDS NP_746860.1 26991435 1041945 5410997..5411644 1 NC_002947.3 identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 5411644 1041945 PP_4754 Pseudomonas putida KT2440 TetR family transcriptional regulator NP_746860.1 5410997 D 160488 CDS NP_746861.1 26991436 1041681 complement(5411774..5414167) 1 NC_002947.3 similar to GP:2981048, GB:M31516, GB:M30142, SP:P08174, and PID:181476; identified by sequence similarity; TonB-dependent siderophore receptor 5414167 1041681 PP_4755 Pseudomonas putida KT2440 TonB-dependent siderophore receptor NP_746861.1 5411774 R 160488 CDS NP_746862.1 26991437 1041978 complement(5414383..5415774) 1 NC_002947.3 similar to GB:X53331, GB:X07362, GB:M55270, GB:M58549, SP:P08493, PID:187591, PID:187593, PID:34614, and PID:34618; identified by sequence similarity; amino acid permease 5415774 1041978 PP_4756 Pseudomonas putida KT2440 amino acid permease NP_746862.1 5414383 R 160488 CDS NP_746863.1 26991438 1043094 complement(5416335..5417681) 1 NC_002947.3 similar to GB:S95936, GB:M17610, GB:M17611, GB:M17612, GB:M17613, GB:M17614, GB:M12525, GB:M26641, GB:M21570, GB:M11372, GB:M11361, GB:M11362, GB:M11363, GB:M11364, GB:M11365, GB:M11366, GB:M11367, GB:M11368, GB:M11369, GB:M11370, GB:M11371, SP:P02787, PID:339453, PID:339469, PID:339475, PID:339485, PID:339486, PID:339989, PID:553788, GB:S95936, GB:M17610, GB:M17611, GB:M17612, GB:M17613, GB:M17614, GB:M12525, GB:M26641, GB:M21570, GB:M11372, GB:M11361, GB:M11362, GB:M11363, GB:M11364, GB:M11365, GB:M11366, GB:M11367, GB:M11368, GB:M11369, GB:M11370, GB:M11371, SP:P02787, PID:339453, PID:339469, PID:339475, PID:339485, PID:339486, PID:339989, and PID:553788; identified by sequence similarity; glucarate dehydratase 5417681 1043094 PP_4757 Pseudomonas putida KT2440 glucarate dehydratase NP_746863.1 5416335 R 160488 CDS NP_746864.1 26991439 1041916 complement(5417701..5419068) 1 NC_002947.3 similar to GP:6714755; identified by sequence similarity; major facilitator family transporter 5419068 1041916 PP_4758 Pseudomonas putida KT2440 major facilitator family transporter NP_746864.1 5417701 R 160488 CDS NP_746865.1 26991440 1041852 5419235..5420014 1 NC_002947.3 similar to GP:6573304; identified by sequence similarity; GntR family transcriptional regulator 5420014 1041852 PP_4759 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_746865.1 5419235 D 160488 CDS NP_746866.1 26991441 1043030 complement(5420086..5421096) 1 NC_002947.3 similar to GP:6740905; identified by sequence similarity; zinc-containing alcohol dehydrogenase 5421096 1043030 PP_4760 Pseudomonas putida KT2440 zinc-containing alcohol dehydrogenase NP_746866.1 5420086 R 160488 CDS NP_746867.1 26991442 1042571 complement(5421261..5421851) 1 NC_002947.3 similar to GP:9950128; identified by sequence similarity; HAD superfamily hydrolase 5421851 1042571 PP_4761 Pseudomonas putida KT2440 HAD superfamily hydrolase NP_746867.1 5421261 R 160488 CDS NP_746868.1 26991443 1041917 complement(5421848..5422717) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00189; acyl-CoA thioesterase 5422717 tesB 1041917 tesB Pseudomonas putida KT2440 acyl-CoA thioesterase NP_746868.1 5421848 R 160488 CDS NP_746869.1 26991444 1042823 complement(5422867..5423403) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00583; acetyltransferase 5423403 1042823 PP_4763 Pseudomonas putida KT2440 acetyltransferase NP_746869.1 5422867 R 160488 CDS NP_746870.1 26991445 1042896 5424400..5425314 1 NC_002947.3 similar to GB:M62420, GB:J04056, GB:X88010, SP:P16152, PID:179978, and PID:181037; identified by sequence similarity; histone deacetylase superfamily protein 5425314 1042896 PP_4764 Pseudomonas putida KT2440 histone deacetylase superfamily protein NP_746870.1 5424400 D 160488 CDS NP_746871.1 26991446 1046073 5425463..5426701 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00275; hypothetical protein 5426701 1046073 PP_4765 Pseudomonas putida KT2440 hypothetical protein NP_746871.1 5425463 D 160488 CDS NP_746872.1 26991447 1041883 complement(5426769..5428100) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00271; DEAD/DEAH box helicase 5428100 1041883 PP_4766 Pseudomonas putida KT2440 DEAD/DEAH box helicase NP_746872.1 5426769 R 160488 CDS NP_746873.1 26991448 1042894 complement(5428156..5429076) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04172; hypothetical protein 5429076 1042894 PP_4767 Pseudomonas putida KT2440 hypothetical protein NP_746873.1 5428156 R 160488 CDS NP_746874.1 26991449 1042958 complement(5429216..5429827) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00929; DNA polymerase III subunit epsilon 5429827 1042958 PP_4768 Pseudomonas putida KT2440 DNA polymerase III subunit epsilon NP_746874.1 5429216 R 160488 CDS NP_746875.1 26991450 1042932 complement(5429837..5430316) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01936; hypothetical protein 5430316 1042932 PP_4769 Pseudomonas putida KT2440 hypothetical protein NP_746875.1 5429837 R 160488 CDS NP_746876.1 26991451 1041717 complement(5430477..5431235) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00639; periplasmic ligand-binding sensor protein 5431235 1041717 PP_4770 Pseudomonas putida KT2440 periplasmic ligand-binding sensor protein NP_746876.1 5430477 R 160488 CDS NP_746877.1 26991452 1045872 5431403..5432059 1 NC_002947.3 similar to GP:9950143; identified by sequence similarity; hypothetical protein 5432059 1045872 PP_4771 Pseudomonas putida KT2440 hypothetical protein NP_746877.1 5431403 D 160488 CDS NP_746878.1 26991453 1042828 complement(5432733..5435261) 1 NC_002947.3 similar to SP:P37024; identified by sequence similarity; ATP-dependent helicase HrpB 5435261 hrpB 1042828 hrpB Pseudomonas putida KT2440 ATP-dependent helicase HrpB NP_746878.1 5432733 R 160488 CDS NP_746879.1 26991454 1042377 5435315..5435797 1 NC_002947.3 similar to GP:9950151; identified by sequence similarity; hypothetical protein 5435797 1042377 PP_4773 Pseudomonas putida KT2440 hypothetical protein NP_746879.1 5435315 D 160488 CDS NP_746880.1 26991455 1042045 5435820..5436692 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01297; cation diffusion facilitator family transporter 5436692 1042045 PP_4774 Pseudomonas putida KT2440 cation diffusion facilitator family transporter NP_746880.1 5435820 D 160488 CDS NP_746881.1 26991456 1042931 complement(5436720..5437709) 1 NC_002947.3 hypothetical protein 5437709 1042931 PP_4775 Pseudomonas putida KT2440 hypothetical protein NP_746881.1 5436720 R 160488 CDS NP_746882.1 26991457 1042959 5437952..5438428 1 NC_002947.3 identified by match to PFAM protein family HMM PF01037; AsnC family transcriptional regulator 5438428 1042959 PP_4776 Pseudomonas putida KT2440 AsnC family transcriptional regulator NP_746882.1 5437952 D 160488 CDS NP_746883.1 26991458 1042936 5438482..5438685 1 NC_002947.3 similar to GP:9950155; identified by sequence similarity; hypothetical protein 5438685 1042936 PP_4777 Pseudomonas putida KT2440 hypothetical protein NP_746883.1 5438482 D 160488 CDS NP_746884.2 161378119 1041881 complement(5439360..5440823) 1 NC_002947.3 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 5440823 1041881 PP_4779 Pseudomonas putida KT2440 AMP nucleosidase NP_746884.2 5439360 R 160488 CDS NP_746885.1 26991460 1042068 complement(5440929..5442581) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00441; acyl-CoA dehydrogenase 5442581 1042068 PP_4780 Pseudomonas putida KT2440 acyl-CoA dehydrogenase NP_746885.1 5440929 R 160488 CDS NP_746886.1 26991461 1045745 complement(5442789..5444777) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02518; integral membrane sensor signal transduction histidine kinase 5444777 1045745 PP_4781 Pseudomonas putida KT2440 integral membrane sensor signal transduction histidine kinase NP_746886.1 5442789 R 160488 CDS NP_746887.1 26991462 1041826 5445043..5445840 1 NC_002947.3 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 5445840 thiD 1041826 thiD Pseudomonas putida KT2440 phosphomethylpyrimidine kinase NP_746887.1 5445043 D 160488 CDS NP_746888.1 26991463 1042405 5445854..5446477 1 NC_002947.3 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 5446477 thiE 1042405 thiE Pseudomonas putida KT2440 thiamine-phosphate pyrophosphorylase NP_746888.1 5445854 D 160488 CDS NP_746889.1 26991464 1042981 5446494..5447777 1 NC_002947.3 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 5447777 hemL 1042981 hemL Pseudomonas putida KT2440 glutamate-1-semialdehyde aminotransferase NP_746889.1 5446494 D 160488 CDS NP_746890.1 26991465 1042967 5448022..5448567 1 NC_002947.3 similar to GB:U04209, SP:P55081, PID:434656, GB:U04209, SP:P55081, and PID:434656; identified by sequence similarity; Sel1 domain-containing protein repeat-containing protein 5448567 1042967 PP_4785 Pseudomonas putida KT2440 Sel1 domain-containing protein repeat-containing protein NP_746890.1 5448022 D 160488 CDS NP_746891.1 26991466 1043434 complement(5448571..5448897) 1 NC_002947.3 similar to GP:9950170; identified by sequence similarity; hypothetical protein 5448897 1043434 PP_4786 Pseudomonas putida KT2440 hypothetical protein NP_746891.1 5448571 R 160488 CDS NP_746892.1 26991467 1042993 5449130..5450128 1 NC_002947.3 identified by match to PFAM protein family HMM PF02562; PhoH family protein 5450128 1042993 PP_4787 Pseudomonas putida KT2440 PhoH family protein NP_746892.1 5449130 D 160488 CDS NP_746893.1 26991468 1046266 5450121..5450594 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00043; metalloprotease 5450594 1046266 PP_4788 Pseudomonas putida KT2440 metalloprotease NP_746893.1 5450121 D 160488 CDS NP_746894.1 26991469 1042537 5450620..5451459 1 NC_002947.3 similar to SP:Q9R874; identified by sequence similarity; hypothetical protein 5451459 1042537 PP_4789 Pseudomonas putida KT2440 hypothetical protein NP_746894.1 5450620 D 160488 CDS NP_746895.1 26991470 1044913 5451468..5452985 1 NC_002947.3 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 5452985 lnt 1044913 lnt Pseudomonas putida KT2440 apolipoprotein N-acyltransferase NP_746895.1 5451468 D 160488 CDS NP_746896.1 26991471 1042861 5453340..5454668 1 NC_002947.3 similar to GP:6723233; identified by sequence similarity; ISPpu9, transposase 5454668 1042861 PP_4791 Pseudomonas putida KT2440 ISPpu9, transposase NP_746896.1 5453340 D 160488 CDS NP_746897.1 26991472 1042910 complement(5454829..5455590) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02698; hypothetical protein 5455590 1042910 PP_4792 Pseudomonas putida KT2440 hypothetical protein NP_746897.1 5454829 R 160488 CDS NP_746898.1 26991473 1041677 complement(5455725..5456039) 1 NC_002947.3 similar to GP:9950177; identified by sequence similarity; hypothetical protein 5456039 1041677 PP_4793 Pseudomonas putida KT2440 hypothetical protein NP_746898.1 5455725 R 160488 CDS NP_746899.1 26991474 1042400 5456267..5458873 1 NC_002947.3 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 5458873 leuS 1042400 leuS Pseudomonas putida KT2440 leucyl-tRNA synthetase NP_746899.1 5456267 D 160488 CDS NP_746900.1 26991475 1042254 5458935..5459540 1 NC_002947.3 similar to GP:9950179; identified by sequence similarity; rare lipoprotein B 5459540 1042254 PP_4795 Pseudomonas putida KT2440 rare lipoprotein B NP_746900.1 5458935 D 160488 CDS NP_746901.1 26991476 1041615 5459580..5460617 1 NC_002947.3 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 5460617 holA 1041615 holA Pseudomonas putida KT2440 DNA polymerase III subunit delta NP_746901.1 5459580 D 160488 CDS NP_746902.1 26991477 1042983 5460834..5460998 1 NC_002947.3 identified by match to PFAM protein family HMM PF03889; hypothetical protein 5460998 1042983 PP_4797 Pseudomonas putida KT2440 hypothetical protein NP_746902.1 5460834 D 160488 CDS NP_746903.1 26991478 1041890 5461059..5462375 1 NC_002947.3 identified by match to PFAM protein family HMM PF01471; lytic murein transglycosylase 5462375 1041890 PP_4798 Pseudomonas putida KT2440 lytic murein transglycosylase NP_746903.1 5461059 D 160488 CDS NP_746904.1 26991479 1042920 complement(5462408..5463346) 1 NC_002947.3 similar to SP:Q9ZBI5, SP:P17996, GB:D26486, GB:X53034, PID:44166, and PID:804883; identified by sequence similarity; muramoyltetrapeptide carboxypeptidase 5463346 1042920 PP_4799 Pseudomonas putida KT2440 muramoyltetrapeptide carboxypeptidase NP_746904.1 5462408 R 160488 CDS NP_746905.1 26991480 1041614 complement(5463445..5464461) 1 NC_002947.3 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 5464461 lipA 1041614 lipA Pseudomonas putida KT2440 lipoyl synthase NP_746905.1 5463445 R 160488 CDS NP_746906.1 26991481 1045269 complement(5464464..5465114) 1 NC_002947.3 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 5465114 lipB 1045269 lipB Pseudomonas putida KT2440 lipoate-protein ligase B NP_746906.1 5464464 R 160488 CDS NP_746907.1 26991482 1041854 complement(5465111..5465386) 1 NC_002947.3 hypothetical protein 5465386 1041854 PP_4802 Pseudomonas putida KT2440 hypothetical protein NP_746907.1 5465111 R 160488 CDS NP_746908.1 26991483 1042250 complement(5465460..5466620) 1 NC_002947.3 similar to GP:4887207, GB:M19722, GB:K03219, SP:P09769, PID:1335011, PID:182574, PID:182588, PID:338463, PID:553223, and PID:553286; identified by sequence similarity; serine-type D-Ala-D-Ala carboxypeptidase 5466620 dacA 1042250 dacA Pseudomonas putida KT2440 serine-type D-Ala-D-Ala carboxypeptidase NP_746908.1 5465460 R 160488 CDS NP_746909.1 26991484 1043058 complement(5466841..5467842) 1 NC_002947.3 similar to GP:4887206; identified by sequence similarity; rare lipoprotein A family 5467842 1043058 PP_4804 Pseudomonas putida KT2440 rare lipoprotein A family NP_746909.1 5466841 R 160488 CDS NP_746910.1 26991485 1043075 complement(5467842..5468888) 1 NC_002947.3 similar to GB:S67291, GB:S67292, GB:S67294, GB:X51943, GB:M13361, GB:M60515, GB:M60516, GB:M60518, GB:M60519, GB:M60520, GB:M60521, GB:X59065, GB:X65778, GB:X59612, SP:P05230, PID:181942, PID:182559, PID:292022, PID:292027, PID:32436, PID:386768, PID:396164, PID:396166, PID:553170, and PID:553171; identified by sequence similarity; lytic murein transglycosylase B 5468888 mltB 1043075 mltB Pseudomonas putida KT2440 lytic murein transglycosylase B NP_746910.1 5467842 R 160488 CDS NP_746911.1 26991486 1041850 complement(5468870..5469994) 1 NC_002947.3 similar to GB:X60459, SP:P17181, PID:1247459, PID:1247461, PID:1567383, PID:1567385, PID:306914, and PID:32672; identified by sequence similarity; rod shape-determining protein RodA 5469994 rodA 1041850 rodA Pseudomonas putida KT2440 rod shape-determining protein RodA NP_746911.1 5468870 R 160488 CDS NP_746912.1 26991487 1041858 complement(5470012..5471901) 1 NC_002947.3 similar to GB:J02938, GB:U13680, GB:X15954, GB:X15957, SP:P07864, PID:187074, PID:307120, and PID:535360; identified by sequence similarity; penicillin-binding protein 2 5471901 mrdA-2 1041858 mrdA-2 Pseudomonas putida KT2440 penicillin-binding protein 2 NP_746912.1 5470012 R 160488 CDS NP_746913.2 228994956 1042986 complement(5471918..5472385) 1 NC_002947.3 SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 5472385 1042986 PP_4808 Pseudomonas putida KT2440 rRNA large subunit methyltransferase NP_746913.2 5471918 R 160488 CDS NP_746914.1 26991489 1041679 complement(5472396..5472815) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02410; iojap family protein 5472815 1041679 PP_4809 Pseudomonas putida KT2440 iojap family protein NP_746914.1 5472396 R 160488 CDS NP_746915.1 26991490 1042501 complement(5472859..5473551) 1 NC_002947.3 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 5473551 nadD 1042501 nadD Pseudomonas putida KT2440 nicotinic acid mononucleotide adenylyltransferase NP_746915.1 5472859 R 160488 CDS NP_746916.1 26991491 1042960 complement(5473520..5474791) 1 NC_002947.3 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 5474791 proA 1042960 proA Pseudomonas putida KT2440 gamma-glutamyl phosphate reductase NP_746916.1 5473520 R 160488 CDS NP_746917.1 26991492 1042584 5475097..5475765 1 NC_002947.3 responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 5475765 1042584 PP_4812 Pseudomonas putida KT2440 3-methyladenine DNA glycosylase NP_746917.1 5475097 D 160488 CDS NP_746918.1 26991493 1041994 5475768..5477084 1 NC_002947.3 identified by match to PFAM protein family HMM PF04279; PAP2 family protein/DedA family protein 5477084 1041994 PP_4813 Pseudomonas putida KT2440 PAP2 family protein/DedA family protein NP_746918.1 5475768 D 160488 CDS NP_746919.1 26991494 1041926 complement(5477196..5477789) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02190; ATP-dependent protease La 5477789 1041926 PP_4814 Pseudomonas putida KT2440 ATP-dependent protease La NP_746919.1 5477196 R 160488 CDS NP_746920.1 26991495 1042937 complement(5477796..5478512) 1 NC_002947.3 similar to GP:9950206; identified by sequence similarity; LrgB family protein 5478512 1042937 PP_4815 Pseudomonas putida KT2440 LrgB family protein NP_746920.1 5477796 R 160488 CDS NP_746921.1 26991496 1045700 complement(5478509..5478877) 1 NC_002947.3 similar to GP:9950207; identified by sequence similarity; LrgA family protein 5478877 1045700 PP_4816 Pseudomonas putida KT2440 LrgA family protein NP_746921.1 5478509 R 160488 CDS NP_746922.1 26991497 1045908 5479015..5479470 1 NC_002947.3 identified by match to PFAM protein family HMM PF01575; acyl dehydratase MaoC 5479470 1045908 PP_4817 Pseudomonas putida KT2440 acyl dehydratase MaoC NP_746922.1 5479015 D 160488 CDS NP_746923.2 161378118 1043073 5479588..5480466 1 NC_002947.3 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 5480466 prmA 1043073 prmA Pseudomonas putida KT2440 50S ribosomal protein L11 methyltransferase NP_746923.2 5479588 D 160488 CDS NP_746924.1 26991499 1045946 5480509..5481864 1 NC_002947.3 Zinc finger-domain-containing protein 5481864 1045946 PP_4819 Pseudomonas putida KT2440 Zinc finger-domain-containing protein NP_746924.1 5480509 D 160488 CDS NP_746925.1 26991500 1041701 5482072..5483085 1 NC_002947.3 identified by match to PFAM protein family HMM PF04131; NifR3 family TIM-barrel protein 5483085 1041701 PP_4820 Pseudomonas putida KT2440 NifR3 family TIM-barrel protein NP_746925.1 5482072 D 160488 CDS NP_746926.1 26991501 1045805 5483082..5483402 1 NC_002947.3 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; Fis family transcriptional regulator 5483402 fis 1045805 fis Pseudomonas putida KT2440 Fis family transcriptional regulator NP_746926.1 5483082 D 160488 CDS NP_746927.1 26991502 1045913 5483484..5485091 1 NC_002947.3 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 5485091 purH 1045913 purH Pseudomonas putida KT2440 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase NP_746927.1 5483484 D 160488 CDS NP_746928.1 26991503 1043159 5485238..5486533 1 NC_002947.3 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 5486533 purD 1043159 purD Pseudomonas putida KT2440 phosphoribosylamine--glycine ligase NP_746928.1 5485238 D 160488 CDS NP_746929.1 26991504 1041944 5486669..5489440 1 NC_002947.3 identified by match to PFAM protein family HMM PF04171; integral membrane sensor hybrid histidine kinase 5489440 1041944 PP_4824 Pseudomonas putida KT2440 integral membrane sensor hybrid histidine kinase NP_746929.1 5486669 D 160488 CDS NP_746930.1 26991505 1042146 5489516..5490112 1 NC_002947.3 identified by match to PFAM protein family HMM PF01914; multiple antibiotic resistance protein MarC 5490112 1042146 PP_4825 Pseudomonas putida KT2440 multiple antibiotic resistance protein MarC NP_746930.1 5489516 D 160488 CDS NP_746931.1 26991506 1043199 complement(5492315..5494012) 1 NC_002947.3 similar to GP:9948995; identified by sequence similarity; precorrin-3B C(17)-methyltransferase 5494012 cobJ 1043199 cobJ Pseudomonas putida KT2440 precorrin-3B C(17)-methyltransferase NP_746931.1 5492315 R 160488 CDS NP_746932.1 26991507 1041895 complement(5494000..5494734) 1 NC_002947.3 catalyzes the formation of precorrin-3 from precorrin-2; precorrin-2 C(20)-methyltransferase 5494734 cobI 1041895 cobI Pseudomonas putida KT2440 precorrin-2 C(20)-methyltransferase NP_746932.1 5494000 R 160488 CDS NP_746933.1 26991508 1042403 complement(5494731..5495357) 1 NC_002947.3 catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; precorrin-8X methylmutase 5495357 cobH 1042403 cobH Pseudomonas putida KT2440 precorrin-8X methylmutase NP_746933.1 5494731 R 160488 CDS NP_746934.1 26991509 1042946 complement(5495350..5496681) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03460; precorrin-3B synthase 5496681 1042946 PP_4829 Pseudomonas putida KT2440 precorrin-3B synthase NP_746934.1 5495350 R 160488 CDS NP_746935.1 26991510 1045559 5496925..5498136 1 NC_002947.3 identified by match to PFAM protein family HMM PF00590; precorrin-6y C5,15-methyltransferase subunit CbiE 5498136 cobL 1045559 cobL Pseudomonas putida KT2440 precorrin-6y C5,15-methyltransferase subunit CbiE NP_746935.1 5496925 D 160488 CDS NP_746936.1 26991511 1042968 5498129..5499223 1 NC_002947.3 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 5499223 cbiD 1042968 cbiD Pseudomonas putida KT2440 cobalt-precorrin-6A synthase NP_746936.1 5498129 D 160488 CDS NP_746937.1 26991512 1044389 5499220..5499939 1 NC_002947.3 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 5499939 cobK 1044389 cobK Pseudomonas putida KT2440 cobalt-precorrin-6x reductase NP_746937.1 5499220 D 160488 CDS NP_746938.1 26991513 1042094 5500074..5500505 1 NC_002947.3 identified by match to PFAM protein family HMM PF02104; SURF1 domain-containing protein 5500505 1042094 PP_4833 Pseudomonas putida KT2440 SURF1 domain-containing protein NP_746938.1 5500074 D 160488 CDS NP_746939.1 26991514 1041846 5500532..5501386 1 NC_002947.3 similar to GB:Z23013, SP:Q08815, and PID:396549; identified by sequence similarity; hypothetical protein 5501386 1041846 PP_4834 Pseudomonas putida KT2440 hypothetical protein NP_746939.1 5500532 D 160488 CDS NP_746940.1 26991515 1041610 5501605..5501994 1 NC_002947.3 hypothetical protein 5501994 1041610 PP_4835 Pseudomonas putida KT2440 hypothetical protein NP_746940.1 5501605 D 160488 CDS NP_746941.1 26991516 1045772 5502042..5502527 1 NC_002947.3 identified by match to PFAM protein family HMM PF04314; hypothetical protein 5502527 1045772 PP_4836 Pseudomonas putida KT2440 hypothetical protein NP_746941.1 5502042 D 160488 CDS NP_746942.1 26991517 1042119 5502550..5502981 1 NC_002947.3 similar to GP:9949964; identified by sequence similarity; hypothetical protein 5502981 1042119 PP_4837 Pseudomonas putida KT2440 hypothetical protein NP_746942.1 5502550 D 160488 CDS NP_746943.1 26991518 1041884 5503048..5505114 1 NC_002947.3 similar to GB:M90413, PID:153311, GB:M90413, and PID:153311; identified by sequence similarity; TonB-dependent copper receptor 5505114 oprC 1041884 oprC Pseudomonas putida KT2440 TonB-dependent copper receptor NP_746943.1 5503048 D 160488 CDS NP_746944.1 26991519 1043147 5505171..5506538 1 NC_002947.3 similar to GB:M77806, and PID:143926; identified by sequence similarity; hypothetical protein 5506538 1043147 PP_4839 Pseudomonas putida KT2440 hypothetical protein NP_746944.1 5505171 D 160488 CDS NP_746945.1 26991520 1043154 5506737..5508143 1 NC_002947.3 involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease 5508143 cycA 1043154 cycA Pseudomonas putida KT2440 D-alanine/D-serine/glycine permease NP_746945.1 5506737 D 160488 CDS NP_746946.1 26991521 1042286 5508393..5509658 1 NC_002947.3 branched-chain amino acid ABC transporter substrate-binding protein 5509658 1042286 PP_4841 Pseudomonas putida KT2440 branched-chain amino acid ABC transporter substrate-binding protein NP_746946.1 5508393 D 160488 CDS NP_746947.1 26991522 1041898 5510246..5511286 1 NC_002947.3 identified by match to PFAM protein family HMM PF02653; branched-chain amino acid ABC transporter permease 5511286 1041898 PP_4842 Pseudomonas putida KT2440 branched-chain amino acid ABC transporter permease NP_746947.1 5510246 D 160488 CDS NP_746948.1 26991523 1043002 5511286..5512365 1 NC_002947.3 similar to GP:9951132; identified by sequence similarity; branched-chain amino acid ABC transporter permease 5512365 1043002 PP_4843 Pseudomonas putida KT2440 branched-chain amino acid ABC transporter permease NP_746948.1 5511286 D 160488 CDS NP_746949.1 26991524 1041853 5512362..5513219 1 NC_002947.3 identified by match to PFAM protein family HMM PF00005; branched-chain amino acid ABC transporter ATP-binding protein 5513219 1041853 PP_4844 Pseudomonas putida KT2440 branched-chain amino acid ABC transporter ATP-binding protein NP_746949.1 5512362 D 160488 CDS NP_746950.1 26991525 1042145 5513373..5514071 1 NC_002947.3 identified by match to PFAM protein family HMM PF00005; branched-chain amino acid ABC transporter ATP-binding protein 5514071 1042145 PP_4845 Pseudomonas putida KT2440 branched-chain amino acid ABC transporter ATP-binding protein NP_746950.1 5513373 D 160488 CDS NP_746951.1 26991526 1045112 5514103..5514618 1 NC_002947.3 similar to SP:P38106, GB:U10148, GB:U00096, PID:1788925, PID:987647, and PID:994818; identified by sequence similarity; N-acetyltransferase GCN5 5514618 1045112 PP_4846 Pseudomonas putida KT2440 N-acetyltransferase GCN5 NP_746951.1 5514103 D 160488 CDS NP_746952.1 26991527 1041837 complement(5514755..5515060) 1 NC_002947.3 hypothetical protein 5515060 1041837 PP_4847 Pseudomonas putida KT2440 hypothetical protein NP_746952.1 5514755 R 160488 CDS NP_746953.1 26991528 1041673 complement(5515063..5516022) 1 NC_002947.3 similar to GB:X05615, GB:X06065, GB:X02154, SP:P01266, PID:1335349, PID:1359884, PID:2204216, PID:37174, GB:X05615, GB:X06065, GB:X02154, SP:P01266, PID:1335349, PID:1359884, PID:2204216, and PID:37174; identified by sequence similarity; DnaJ family curved-DNA-binding protein 5516022 1041673 PP_4848 Pseudomonas putida KT2440 DnaJ family curved-DNA-binding protein NP_746953.1 5515063 R 160488 CDS NP_746954.1 26991529 1043134 5516187..5517458 1 NC_002947.3 identified by match to PFAM protein family HMM PF00012; molecular chaperone DnaK 5517458 1043134 PP_4849 Pseudomonas putida KT2440 molecular chaperone DnaK NP_746954.1 5516187 D 160488 CDS NP_746955.1 26991530 1046078 complement(5517510..5518577) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01594; hypothetical protein 5518577 1046078 PP_4850 Pseudomonas putida KT2440 hypothetical protein NP_746955.1 5517510 R 160488 CDS NP_746956.1 26991531 1041973 complement(5518587..5518907) 1 NC_002947.3 similar to SP:P27295; identified by sequence similarity; PsiF repeat protein 5518907 1041973 PP_4851 Pseudomonas putida KT2440 PsiF repeat protein NP_746956.1 5518587 R 160488 CDS NP_746957.1 26991532 1046091 complement(5518938..5519726) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 5519726 1046091 PP_4852 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_746957.1 5518938 R 160488 CDS NP_746958.1 26991533 1041998 5519952..5520833 1 NC_002947.3 identified by match to PFAM protein family HMM PF00892; hypothetical protein 5520833 1041998 PP_4853 Pseudomonas putida KT2440 hypothetical protein NP_746958.1 5519952 D 160488 CDS NP_746959.1 26991534 1042639 complement(5520835..5521782) 1 NC_002947.3 similar to GP:3098280, GB:X17644, SP:P15170, PID:1930145, and PID:31921; identified by sequence similarity; alpha/beta hydrolase 5521782 lip 1042639 lip Pseudomonas putida KT2440 alpha/beta hydrolase NP_746959.1 5520835 R 160488 CDS NP_746960.1 26991535 1042822 5521849..5522190 1 NC_002947.3 osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE 5522190 1042822 PP_4855 Pseudomonas putida KT2440 DNA-binding transcriptional activator OsmE NP_746960.1 5521849 D 160488 CDS NP_746961.1 26991536 1041936 5522257..5522763 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00754; bacterioferritin 5522763 1041936 PP_4856 Pseudomonas putida KT2440 bacterioferritin NP_746961.1 5522257 D 160488 CDS NP_746962.1 26991537 1041952 complement(5522803..5524869) 1 NC_002947.3 AsmA family protein 5524869 1041952 PP_4857 Pseudomonas putida KT2440 AsmA family protein NP_746962.1 5522803 R 160488 CDS NP_746963.1 26991538 1041919 5525210..5525707 1 NC_002947.3 similar to GP:8843968; identified by sequence similarity; hypothetical protein 5525707 1041919 PP_4858 Pseudomonas putida KT2440 hypothetical protein NP_746963.1 5525210 D 160488 CDS NP_746964.1 26991539 1041950 5525830..5526465 1 NC_002947.3 identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 5526465 1041950 PP_4859 Pseudomonas putida KT2440 TetR family transcriptional regulator NP_746964.1 5525830 D 160488 CDS NP_746965.1 26991540 1043333 5526485..5527618 1 NC_002947.3 similar to SP:P29954, GB:M25813, SP:P22105, PID:1794184, PID:183070, PID:1841546, PID:2347137, and PID:394794; identified by sequence similarity; N-acylglucosamine 2-epimerase 5527618 1043333 PP_4860 Pseudomonas putida KT2440 N-acylglucosamine 2-epimerase NP_746965.1 5526485 D 160488 CDS NP_746966.1 26991541 1043169 5527721..5527969 1 NC_002947.3 hypothetical protein 5527969 1043169 PP_4861 Pseudomonas putida KT2440 hypothetical protein NP_746966.1 5527721 D 160488 CDS NP_746967.1 26991542 1041838 complement(5528019..5528783) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 5528783 1041838 PP_4862 Pseudomonas putida KT2440 short chain dehydrogenase/reductase oxidoreductase NP_746967.1 5528019 R 160488 CDS NP_746968.1 26991543 1042617 complement(5529377..5530093) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00005; branched chain amino acid ABC transporter ATP-binding protein 5530093 1042617 PP_4863 Pseudomonas putida KT2440 branched chain amino acid ABC transporter ATP-binding protein NP_746968.1 5529377 R 160488 CDS NP_746969.1 26991544 1042659 complement(5530090..5530965) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00005; branched chain amino acid ABC transporter ATP-binding protein 5530965 1042659 PP_4864 Pseudomonas putida KT2440 branched chain amino acid ABC transporter ATP-binding protein NP_746969.1 5530090 R 160488 CDS NP_746970.1 26991545 1043236 complement(5530962..5532269) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02653; inner-membrane translocator 5532269 1043236 PP_4865 Pseudomonas putida KT2440 inner-membrane translocator NP_746970.1 5530962 R 160488 CDS NP_746971.1 26991546 1041896 complement(5532266..5533180) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04306; inner-membrane translocator 5533180 1041896 PP_4866 Pseudomonas putida KT2440 inner-membrane translocator NP_746971.1 5532266 R 160488 CDS NP_746972.1 26991547 1043170 complement(5533335..5534471) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01094; ABC transporter substrate-binding protein 5534471 1043170 PP_4867 Pseudomonas putida KT2440 ABC transporter substrate-binding protein NP_746972.1 5533335 R 160488 CDS NP_746973.1 26991548 1043392 5534981..5536189 1 NC_002947.3 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 5536189 pncB 1043392 pncB Pseudomonas putida KT2440 nicotinate phosphoribosyltransferase NP_746973.1 5534981 D 160488 CDS NP_746974.1 26991549 1042383 5536193..5537020 1 NC_002947.3 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 5537020 nadE 1042383 nadE Pseudomonas putida KT2440 NAD synthetase NP_746974.1 5536193 D 160488 CDS NP_746975.1 26991550 1043477 complement(5537123..5537572) 1 NC_002947.3 similar to GP:11037693, GB:J03799, GB:X15005, GB:S37431, GB:M14199, GB:X61156, GB:U36484, SP:P08865, PID:1125065, PID:34272, and PID:386857; identified by sequence similarity; azurin 5537572 1043477 PP_4870 Pseudomonas putida KT2440 azurin NP_746975.1 5537123 R 160488 CDS NP_746976.1 26991551 1045422 5537920..5538507 1 NC_002947.3 identified by match to PFAM protein family HMM PF03641; hypothetical protein 5538507 1045422 PP_4871 Pseudomonas putida KT2440 hypothetical protein NP_746976.1 5537920 D 160488 CDS NP_746977.2 161378117 1043432 complement(5538628..5540928) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00089; hypothetical protein 5540928 1043432 PP_4872 Pseudomonas putida KT2440 hypothetical protein NP_746977.2 5538628 R 160488 CDS NP_746978.1 26991553 1043397 complement(5541298..5542695) 1 NC_002947.3 unwinds double stranded DNA; replicative DNA helicase 5542695 dnaB 1043397 dnaB Pseudomonas putida KT2440 replicative DNA helicase NP_746978.1 5541298 R 160488 CDS NP_746979.1 26991554 1041941 complement(5542809..5543255) 1 NC_002947.3 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 5543255 rplI 1041941 rplI Pseudomonas putida KT2440 50S ribosomal protein L9 NP_746979.1 5542809 R 160488 CDS NP_746980.1 26991555 1042752 complement(5543276..5544139) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03647; hypothetical protein 5544139 1042752 PP_4875 Pseudomonas putida KT2440 hypothetical protein NP_746980.1 5543276 R 160488 CDS NP_746981.1 26991556 1042057 complement(5544173..5544403) 1 NC_002947.3 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 5544403 rpsR 1042057 rpsR Pseudomonas putida KT2440 30S ribosomal protein S18 NP_746981.1 5544173 R 160488 CDS NP_746982.1 26991557 1043837 complement(5544432..5544857) 1 NC_002947.3 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 5544857 rpsF 1043837 rpsF Pseudomonas putida KT2440 30S ribosomal protein S6 NP_746982.1 5544432 R 160488 CDS NP_746983.1 26991558 1043851 complement(5545734..5546480) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00186; RNA methyltransferase 5546480 1043851 PP_4879 Pseudomonas putida KT2440 RNA methyltransferase NP_746983.1 5545734 R 160488 CDS NP_746984.1 26991559 1044105 complement(5546477..5549050) 1 NC_002947.3 similar to SP:P21499; identified by sequence similarity; ribonuclease R 5549050 vacB 1044105 vacB Pseudomonas putida KT2440 ribonuclease R NP_746984.1 5546477 R 160488 CDS NP_746985.1 26991560 1044370 5549756..5550769 1 NC_002947.3 similar to SP:P35755; identified by sequence similarity; iron ABC transporter substrate-binding protein 5550769 1044370 PP_4881 Pseudomonas putida KT2440 iron ABC transporter substrate-binding protein NP_746985.1 5549756 D 160488 CDS NP_746986.1 26991561 1042290 5550769..5552334 1 NC_002947.3 identified by match to PFAM protein family HMM PF03553; binding-protein-dependent transport system inner membrane protein 5552334 1042290 PP_4882 Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_746986.1 5550769 D 160488 CDS NP_746987.1 26991562 1044515 5552568..5552672 1 NC_002947.3 hypothetical protein 5552672 1044515 PP_4883 Pseudomonas putida KT2440 hypothetical protein NP_746987.1 5552568 D 160488 CDS NP_746988.1 26991563 1043824 complement(5553366..5554337) 1 NC_002947.3 hypothetical protein 5554337 1043824 PP_4885 Pseudomonas putida KT2440 hypothetical protein NP_746988.1 5553366 R 160488 CDS NP_746989.1 26991564 1044456 complement(5554347..5554892) 1 NC_002947.3 hypothetical protein 5554892 1044456 PP_4886 Pseudomonas putida KT2440 hypothetical protein NP_746989.1 5554347 R 160488 CDS NP_746990.1 26991565 1043411 complement(5555062..5555520) 1 NC_002947.3 hypothetical protein 5555520 1043411 PP_4887 Pseudomonas putida KT2440 hypothetical protein NP_746990.1 5555062 R 160488 CDS NP_746991.1 26991566 1041629 complement(5555691..5557724) 1 NC_002947.3 similar to GP:2626833; identified by sequence similarity; methyl-accepting chemotaxis sensory transducer 5557724 1041629 PP_4888 Pseudomonas putida KT2440 methyl-accepting chemotaxis sensory transducer NP_746991.1 5555691 R 160488 CDS NP_746992.1 26991567 1041987 complement(5557956..5559248) 1 NC_002947.3 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 5559248 purA 1041987 purA Pseudomonas putida KT2440 adenylosuccinate synthetase NP_746992.1 5557956 R 160488 CDS NP_746993.1 26991568 1042009 complement(5559305..5560492) 1 NC_002947.3 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase 5560492 hisZ 1042009 hisZ Pseudomonas putida KT2440 ATP phosphoribosyltransferase NP_746993.1 5559305 R 160488 CDS NP_746994.1 26991569 1041929 complement(5560794..5561663) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01145; HflC protein 5561663 hflC 1041929 hflC Pseudomonas putida KT2440 HflC protein NP_746994.1 5560794 R 160488 CDS NP_746995.1 26991570 1042007 complement(5561663..5562880) 1 NC_002947.3 similar to GP:9951222; identified by sequence similarity; HflK protein 5562880 hflK 1042007 hflK Pseudomonas putida KT2440 HflK protein NP_746995.1 5561663 R 160488 CDS NP_746996.1 26991571 1044733 complement(5562941..5564242) 1 NC_002947.3 similar to GB:X58199, SP:P35612, and PID:29369; identified by sequence similarity; GTP-binding protein HflX 5564242 hflX 1044733 hflX Pseudomonas putida KT2440 GTP-binding protein HflX NP_746996.1 5562941 R 160488 CDS NP_746997.1 26991572 1042020 complement(5564255..5564515) 1 NC_002947.3 Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 5564515 hfq 1042020 hfq Pseudomonas putida KT2440 RNA-binding protein Hfq NP_746997.1 5564255 R 160488 CDS NP_746998.1 26991573 1044229 complement(5564610..5565581) 1 NC_002947.3 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 5565581 miaA 1044229 miaA Pseudomonas putida KT2440 tRNA delta(2)-isopentenylpyrophosphate transferase NP_746998.1 5564610 R 160488 CDS NP_746999.1 26991574 1045669 complement(5565583..5567481) 1 NC_002947.3 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 5567481 mutL 1045669 mutL Pseudomonas putida KT2440 DNA mismatch repair protein NP_746999.1 5565583 R 160488 CDS NP_747000.1 26991575 1046070 complement(5567481..5568911) 1 NC_002947.3 similar to SP:Q46929; identified by sequence similarity; N-acetylmuramoyl-L-alanine amidase 5568911 1046070 PP_4897 Pseudomonas putida KT2440 N-acetylmuramoyl-L-alanine amidase NP_747000.1 5567481 R 160488 CDS NP_747001.1 26991576 1041957 complement(5568923..5569396) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00150; hypothetical protein 5569396 1041957 PP_4898 Pseudomonas putida KT2440 hypothetical protein NP_747001.1 5568923 R 160488 CDS NP_747002.1 26991577 1046069 complement(5569384..5570244) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01256; carbohydrate kinase 5570244 1046069 PP_4899 Pseudomonas putida KT2440 carbohydrate kinase NP_747002.1 5569384 R 160488 CDS NP_747003.1 26991578 1041625 5570310..5571374 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00276; (Fe-S)-binding protein 5571374 1041625 PP_4900 Pseudomonas putida KT2440 (Fe-S)-binding protein NP_747003.1 5570310 D 160488 CDS NP_747004.1 26991579 1045682 complement(5571515..5572126) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03458; hypothetical protein 5572126 1045682 PP_4901 Pseudomonas putida KT2440 hypothetical protein NP_747004.1 5571515 R 160488 CDS NP_747005.1 26991580 1041921 complement(5572218..5572760) 1 NC_002947.3 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 5572760 orn 1041921 orn Pseudomonas putida KT2440 oligoribonuclease NP_747005.1 5572218 R 160488 CDS NP_747006.1 26991581 1045126 5572913..5573944 1 NC_002947.3 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 5573944 1045126 PP_4903 Pseudomonas putida KT2440 ribosome-associated GTPase NP_747006.1 5572913 D 160488 CDS NP_747007.1 26991582 1044665 complement(5574249..5575289) 1 NC_002947.3 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 5575289 motB 1044665 motB Pseudomonas putida KT2440 flagellar motor protein MotB NP_747007.1 5574249 R 160488 CDS NP_747008.1 26991583 1042628 complement(5575293..5576144) 1 NC_002947.3 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 5576144 1042628 PP_4905 Pseudomonas putida KT2440 flagellar motor protein MotA NP_747008.1 5575293 R 160488 CDS NP_747009.1 26991584 1043640 5576275..5577810 1 NC_002947.3 metal-dependent hydrolase HDOD 5577810 1043640 PP_4906 Pseudomonas putida KT2440 metal-dependent hydrolase HDOD NP_747009.1 5576275 D 160488 CDS NP_747010.1 26991585 1042587 5577855..5578664 1 NC_002947.3 similar to GB:L31881, GB:U07811, SP:Q14938, PID:469041, PID:499621, PID:619726, and PID:619730; identified by sequence similarity; rhodanese domain-containing protein 5578664 rhdA-2 1042587 rhdA-2 Pseudomonas putida KT2440 rhodanese domain-containing protein NP_747010.1 5577855 D 160488 CDS NP_747011.1 26991586 1041630 5578674..5579537 1 NC_002947.3 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 5579537 psd 1041630 psd Pseudomonas putida KT2440 phosphatidylserine decarboxylase NP_747011.1 5578674 D 160488 CDS NP_747012.1 26991587 1041911 complement(5579613..5580860) 1 NC_002947.3 similar to GB:L07758, SP:Q13610, and PID:177765; identified by sequence similarity; phosphoserine phosphatase SerB 5580860 serB 1041911 serB Pseudomonas putida KT2440 phosphoserine phosphatase SerB NP_747012.1 5579613 R 160488 CDS NP_747013.1 26991588 1041709 5580962..5582419 1 NC_002947.3 hypothetical protein 5582419 1041709 PP_4910 Pseudomonas putida KT2440 hypothetical protein NP_747013.1 5580962 D 160488 CDS NP_747014.1 26991589 1045243 complement(5582586..5583341) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03886; hypothetical protein 5583341 1045243 PP_4911 Pseudomonas putida KT2440 hypothetical protein NP_747014.1 5582586 R 160488 CDS NP_747015.1 26991590 1041770 complement(5583469..5585727) 1 NC_002947.3 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 5585727 parC 1041770 parC Pseudomonas putida KT2440 DNA topoisomerase IV subunit A NP_747015.1 5583469 R 160488 CDS NP_747016.1 26991591 1045254 complement(5585741..5586259) 1 NC_002947.3 similar to GP:9951247, and GP:9951247; identified by sequence similarity; hypothetical protein 5586259 1045254 PP_4913 Pseudomonas putida KT2440 hypothetical protein NP_747016.1 5585741 R 160488 CDS NP_747017.1 26991592 1045212 complement(5586256..5587281) 1 NC_002947.3 hypothetical protein 5587281 1045212 PP_4914 Pseudomonas putida KT2440 hypothetical protein NP_747017.1 5586256 R 160488 CDS NP_747018.1 26991593 1042640 complement(5587239..5589143) 1 NC_002947.3 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 5589143 parE 1042640 parE Pseudomonas putida KT2440 DNA topoisomerase IV subunit B NP_747018.1 5587239 R 160488 CDS NP_747019.1 26991594 1044286 complement(5589179..5589922) 1 NC_002947.3 hypothetical protein 5589922 1044286 PP_4916 Pseudomonas putida KT2440 hypothetical protein NP_747019.1 5589179 R 160488 CDS NP_747020.1 26991595 1042746 complement(5589919..5590719) 1 NC_002947.3 similar to GB:X16302, SP:P18065, PID:179477, PID:306926, PID:33010, and PID:412023; identified by sequence similarity; icc protein 5590719 1042746 PP_4917 Pseudomonas putida KT2440 icc protein NP_747020.1 5589919 R 160488 CDS NP_747021.1 26991596 1046108 complement(5590805..5591257) 1 NC_002947.3 hypothetical protein 5591257 1046108 PP_4918 Pseudomonas putida KT2440 hypothetical protein NP_747021.1 5590805 R 160488 CDS NP_747022.1 26991597 1041588 complement(5591248..5591877) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00052; NUDIX hydrolase 5591877 1041588 PP_4919 Pseudomonas putida KT2440 NUDIX hydrolase NP_747022.1 5591248 R 160488 CDS NP_747023.1 26991598 1043841 5592051..5592797 1 NC_002947.3 lipoprotein 5592797 1043841 PP_4920 Pseudomonas putida KT2440 lipoprotein NP_747023.1 5592051 D 160488 CDS NP_747024.1 26991599 1041710 complement(5592766..5594049) 1 NC_002947.3 similar to GB:L17309, SP:P39066, PID:348051, PID:2293317, and GB:AL009126; identified by sequence similarity; NCS1 nucleoside transporter 5594049 1041710 PP_4921 Pseudomonas putida KT2440 NCS1 nucleoside transporter NP_747024.1 5592766 R 160488 CDS NP_747025.1 26991600 1041616 complement(5594193..5596073) 1 NC_002947.3 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 5596073 thiC 1041616 thiC Pseudomonas putida KT2440 thiamine biosynthesis protein ThiC NP_747025.1 5594193 R 160488 CDS NP_747026.1 26991601 1041623 5596495..5597928 1 NC_002947.3 similar to SP:P02930; identified by sequence similarity; TolC family type I secretion outer membrane protein 5597928 1041623 PP_4923 Pseudomonas putida KT2440 TolC family type I secretion outer membrane protein NP_747026.1 5596495 D 160488 CDS NP_747027.1 26991602 1041812 complement(5598059..5603476) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00082; serine protease 5603476 1041812 PP_4924 Pseudomonas putida KT2440 serine protease NP_747027.1 5598059 R 160488 CDS NP_747028.1 26991603 1043439 complement(5603473..5604282) 1 NC_002947.3 hypothetical protein 5604282 1043439 PP_4925 Pseudomonas putida KT2440 hypothetical protein NP_747028.1 5603473 R 160488 CDS NP_747029.1 26991604 1043321 complement(5604523..5605941) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00529; HlyD family secretion protein 5605941 1043321 PP_4926 Pseudomonas putida KT2440 HlyD family secretion protein NP_747029.1 5604523 R 160488 CDS NP_747030.1 26991605 1043832 complement(5605938..5608133) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04144; toxin secretion ABC transporter protein 5608133 1043832 PP_4927 Pseudomonas putida KT2440 toxin secretion ABC transporter protein NP_747030.1 5605938 R 160488 CDS NP_747031.1 26991606 1042620 complement(5608321..5609592) 1 NC_002947.3 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 5609592 kdtA 1042620 kdtA Pseudomonas putida KT2440 3-deoxy-D-manno-octulosonic-acid transferase NP_747031.1 5608321 R 160488 CDS NP_747032.1 26991607 1043862 complement(5609604..5610509) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 5610509 1043862 PP_4929 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_747032.1 5609604 R 160488 CDS NP_747033.1 26991608 1041971 5610581..5610913 1 NC_002947.3 identified by match to PFAM protein family HMM PF00893; small multidrug resistance protein 5610913 1041971 PP_4930 Pseudomonas putida KT2440 small multidrug resistance protein NP_747033.1 5610581 D 160488 CDS NP_747034.1 26991609 1043460 5611002..5612177 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00136; FAD dependent oxidoreductase 5612177 1043460 PP_4931 Pseudomonas putida KT2440 FAD dependent oxidoreductase NP_747034.1 5611002 D 160488 CDS NP_747035.1 26991610 1041806 5612174..5612986 1 NC_002947.3 identified by match to PFAM protein family HMM PF00248; aldo/keto reductase 5612986 1041806 PP_4932 Pseudomonas putida KT2440 aldo/keto reductase NP_747035.1 5612174 D 160488 CDS NP_747036.1 26991611 1045109 5613045..5614013 1 NC_002947.3 hypothetical protein 5614013 1045109 PP_4933 Pseudomonas putida KT2440 hypothetical protein NP_747036.1 5613045 D 160488 CDS NP_747037.1 26991612 1043854 complement(5614095..5615516) 1 NC_002947.3 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 5615516 1043854 PP_4934 Pseudomonas putida KT2440 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase NP_747037.1 5614095 R 160488 CDS NP_747038.1 26991613 1043843 complement(5615647..5617455) 1 NC_002947.3 similar to GB:X61177, SP:Q01344, PID:1247445, PID:1247447, PID:186343, PID:186345, PID:186388, PID:33840, PID:33844, PID:36466, and PID:825601; identified by sequence similarity; lipid ABC transporter ATPase/inner membrane protein 5617455 1043843 PP_4935 Pseudomonas putida KT2440 lipid ABC transporter ATPase/inner membrane protein NP_747038.1 5615647 R 160488 CDS NP_747039.1 26991614 1041818 complement(5617471..5618646) 1 NC_002947.3 similar to GP:6742658, and GP:6742658; identified by sequence similarity; O-antigen polymerase 5618646 1041818 PP_4936 Pseudomonas putida KT2440 O-antigen polymerase NP_747039.1 5617471 R 160488 CDS NP_747040.1 26991615 1042607 5618678..5619352 1 NC_002947.3 similar to GP:4336795, and GP:4336795; identified by sequence similarity; toluene tolerance protein 5619352 1042607 PP_4937 Pseudomonas putida KT2440 toluene tolerance protein NP_747040.1 5618678 D 160488 CDS NP_747041.1 26991616 1043864 complement(5619356..5620495) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00534; glycosyl transferase family protein 5620495 1043864 PP_4938 Pseudomonas putida KT2440 glycosyl transferase family protein NP_747041.1 5619356 R 160488 CDS NP_747042.1 26991617 1041873 complement(5620485..5621258) 1 NC_002947.3 similar to GP:4455735; identified by sequence similarity; hypothetical protein 5621258 1041873 PP_4939 Pseudomonas putida KT2440 hypothetical protein NP_747042.1 5620485 R 160488 CDS NP_747043.1 26991618 1042446 complement(5621324..5622280) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00534; hypothetical protein 5622280 1042446 PP_4940 Pseudomonas putida KT2440 hypothetical protein NP_747043.1 5621324 R 160488 CDS NP_747044.1 26991619 1043917 complement(5622329..5623732) 1 NC_002947.3 LmbE family protein 5623732 1043917 PP_4941 Pseudomonas putida KT2440 LmbE family protein NP_747044.1 5622329 R 160488 CDS NP_747045.1 26991620 1041964 complement(5623729..5624625) 1 NC_002947.3 Mig-14 family protein 5624625 1041964 PP_4942 Pseudomonas putida KT2440 Mig-14 family protein NP_747045.1 5623729 R 160488 CDS NP_747046.1 26991621 1043878 complement(5624625..5625755) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00534; glycosyl transferase family protein 5625755 1043878 PP_4943 Pseudomonas putida KT2440 glycosyl transferase family protein NP_747046.1 5624625 R 160488 CDS NP_747047.1 26991622 1042513 complement(5625739..5627496) 1 NC_002947.3 similar to GP:9951291; identified by sequence similarity; carbamoyltransferase 5627496 1042513 PP_4944 Pseudomonas putida KT2440 carbamoyltransferase NP_747047.1 5625739 R 160488 CDS NP_747048.1 26991623 1043921 complement(5627689..5628525) 1 NC_002947.3 similar to GP:9951306; identified by sequence similarity; hypothetical protein 5628525 1043921 PP_4945 Pseudomonas putida KT2440 hypothetical protein NP_747048.1 5627689 R 160488 CDS NP_747049.1 26991624 1041925 complement(5628632..5630110) 1 NC_002947.3 similar to GP:6693830, and GP:6693830; identified by sequence similarity; sodium/proline symporter 5630110 putP 1041925 putP Pseudomonas putida KT2440 sodium/proline symporter NP_747049.1 5628632 R 160488 CDS NP_747050.1 26991625 1043945 5630466..5634419 1 NC_002947.3 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 5634419 putA 1043945 putA Pseudomonas putida KT2440 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase NP_747050.1 5630466 D 160488 CDS NP_747051.1 26991626 1041683 5635628..5637430 1 NC_002947.3 identified by match to PFAM protein family HMM PF00441; acyl-CoA dehydrogenase 5637430 1041683 PP_4948 Pseudomonas putida KT2440 acyl-CoA dehydrogenase NP_747051.1 5635628 D 160488 CDS NP_747052.1 26991627 1041892 5637366..5638904 1 NC_002947.3 identified by match to PFAM protein family HMM PF01523; TldD/PmbA family protein 5638904 1041892 PP_4949 Pseudomonas putida KT2440 TldD/PmbA family protein NP_747052.1 5637366 D 160488 CDS NP_747053.1 26991628 1041751 5638904..5640223 1 NC_002947.3 hypothetical protein 5640223 1041751 PP_4950 Pseudomonas putida KT2440 hypothetical protein NP_747053.1 5638904 D 160488 CDS NP_747054.1 26991629 1043960 5640333..5641760 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter 5641760 1043960 PP_4951 Pseudomonas putida KT2440 EmrB/QacA family drug resistance transporter NP_747054.1 5640333 D 160488 CDS NP_747055.1 26991630 1043931 5641825..5643210 1 NC_002947.3 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 5643210 dbpA 1043931 dbpA Pseudomonas putida KT2440 ATP-dependent RNA helicase DbpA NP_747055.1 5641825 D 160488 CDS NP_747056.1 26991631 1041665 5643333..5644514 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00275; hypothetical protein 5644514 1041665 PP_4953 Pseudomonas putida KT2440 hypothetical protein NP_747056.1 5643333 D 160488 CDS NP_747057.1 26991632 1042425 5644643..5646826 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01666; YccS/YhfK family integral membrane protein 5646826 1042425 PP_4954 Pseudomonas putida KT2440 YccS/YhfK family integral membrane protein NP_747057.1 5644643 D 160488 CDS NP_747058.1 26991633 1043889 complement(5646845..5647582) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00497; hypothetical protein 5647582 1043889 PP_4955 Pseudomonas putida KT2440 hypothetical protein NP_747058.1 5646845 R 160488 CDS NP_747059.1 26991634 1041955 5647736..5648188 1 NC_002947.3 identified by match to PFAM protein family HMM PF00583; acetyltransferase 5648188 1041955 PP_4956 Pseudomonas putida KT2440 acetyltransferase NP_747059.1 5647736 D 160488 CDS NP_747060.1 26991635 1041722 complement(5648212..5648508) 1 NC_002947.3 hypothetical protein 5648508 1041722 PP_4957 Pseudomonas putida KT2440 hypothetical protein NP_747060.1 5648212 R 160488 CDS NP_747061.1 26991636 1044074 complement(5648521..5649060) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01863; hypothetical protein 5649060 1044074 PP_4958 Pseudomonas putida KT2440 hypothetical protein NP_747061.1 5648521 R 160488 CDS NP_747062.1 26991637 1042674 complement(5649061..5651187) 1 NC_002947.3 similar to SP:P21979; identified by sequence similarity; response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 5651187 1042674 PP_4959 Pseudomonas putida KT2440 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) NP_747062.1 5649061 R 160488 CDS NP_747063.1 26991638 1041723 complement(5651400..5652464) 1 NC_002947.3 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 5652464 fda 1041723 fda Pseudomonas putida KT2440 fructose-1,6-bisphosphate aldolase NP_747063.1 5651400 R 160488 CDS NP_747064.1 26991639 1041991 complement(5652565..5652894) 1 NC_002947.3 lipoprotein 5652894 1041991 PP_4961 Pseudomonas putida KT2440 lipoprotein NP_747064.1 5652565 R 160488 CDS NP_747065.1 26991640 1041822 complement(5653055..5653306) 1 NC_002947.3 similar to GP:6911261; identified by sequence similarity; hypothetical protein 5653306 1041822 PP_4962 Pseudomonas putida KT2440 hypothetical protein NP_747065.1 5653055 R 160488 CDS NP_747066.1 26991641 1044025 complement(5653306..5654469) 1 NC_002947.3 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 5654469 pgk 1044025 pgk Pseudomonas putida KT2440 phosphoglycerate kinase NP_747066.1 5653306 R 160488 CDS NP_747067.1 26991642 1041821 complement(5654482..5655540) 1 NC_002947.3 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; D-erythrose-4-phosphate dehydrogenase 5655540 epd 1041821 epd Pseudomonas putida KT2440 D-erythrose-4-phosphate dehydrogenase NP_747067.1 5654482 R 160488 CDS NP_747068.1 26991643 1041814 complement(5655692..5657689) 1 NC_002947.3 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 5657689 tktA 1041814 tktA Pseudomonas putida KT2440 transketolase NP_747068.1 5655692 R 160488 CDS NP_747069.1 26991644 1041704 5657941..5658933 1 NC_002947.3 identified by match to PFAM protein family HMM PF01022; ArsR family transcriptional regulator 5658933 1041704 PP_4966 Pseudomonas putida KT2440 ArsR family transcriptional regulator NP_747069.1 5657941 D 160488 CDS NP_747070.1 26991645 1042402 5658952..5660142 1 NC_002947.3 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 5660142 metK 1042402 metK Pseudomonas putida KT2440 S-adenosylmethionine synthetase NP_747070.1 5658952 D 160488 CDS NP_747071.1 26991646 1041760 5660371..5662071 1 NC_002947.3 this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB 5662071 ligB 1041760 ligB Pseudomonas putida KT2440 NAD-dependent DNA ligase LigB NP_747071.1 5660371 D 160488 CDS NP_747072.1 26991647 1044252 5662204..5662596 1 NC_002947.3 hypothetical protein 5662596 1044252 PP_4969 Pseudomonas putida KT2440 hypothetical protein NP_747072.1 5662204 D 160488 CDS NP_747073.1 26991648 1044109 complement(5662671..5663138) 1 NC_002947.3 similar to GP:9946408, GB:M29893, SP:P11233, SP:P11234, PID:190850, and PID:35846; identified by sequence similarity; cytochrome c' 5663138 1044109 PP_4970 Pseudomonas putida KT2440 cytochrome c' NP_747073.1 5662671 R 160488 CDS NP_747074.1 26991649 1044609 5663222..5664400 1 NC_002947.3 identified by match to PFAM protein family HMM PF03562; MltA domain-containing protein 5664400 1044609 PP_4971 Pseudomonas putida KT2440 MltA domain-containing protein NP_747074.1 5663222 D 160488 CDS NP_747075.1 26991650 1041628 complement(5664451..5664837) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01124; hypothetical protein 5664837 1041628 PP_4972 Pseudomonas putida KT2440 hypothetical protein NP_747075.1 5664451 R 160488 CDS NP_747076.1 26991651 1041824 complement(5664866..5665699) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00892; hypothetical protein 5665699 1041824 PP_4973 Pseudomonas putida KT2440 hypothetical protein NP_747076.1 5664866 R 160488 CDS NP_747077.1 26991652 1043904 5665982..5667217 1 NC_002947.3 identified by match to PFAM protein family HMM PF03596; sodium/hydrogen exchanger 5667217 1043904 PP_4974 Pseudomonas putida KT2440 sodium/hydrogen exchanger NP_747077.1 5665982 D 160488 CDS NP_747078.1 26991653 1042725 complement(5667288..5667689) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01662; thioesterase 5667689 1042725 PP_4975 Pseudomonas putida KT2440 thioesterase NP_747078.1 5667288 R 160488 CDS NP_747079.1 26991654 1042490 5669518..5670405 1 NC_002947.3 similar to SP:O54235; identified by sequence similarity; 5,10-methylenetetrahydrofolate reductase 5670405 metF 1042490 metF Pseudomonas putida KT2440 5,10-methylenetetrahydrofolate reductase NP_747079.1 5669518 D 160488 CDS NP_747080.1 26991655 1043669 5670490..5671575 1 NC_002947.3 hypothetical protein 5671575 1043669 PP_4978 Pseudomonas putida KT2440 hypothetical protein NP_747080.1 5670490 D 160488 CDS NP_747081.1 26991656 1042493 5671745..5672533 1 NC_002947.3 identified by match to PFAM protein family HMM PF00497; hypothetical protein 5672533 1042493 PP_4979 Pseudomonas putida KT2440 hypothetical protein NP_747081.1 5671745 D 160488 CDS NP_747082.1 26991657 1041894 5672752..5674632 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01587; DEAD/DEAH box helicase 5674632 1041894 PP_4980 Pseudomonas putida KT2440 DEAD/DEAH box helicase NP_747082.1 5672752 D 160488 CDS NP_747083.1 26991658 1043313 complement(5674770..5675384) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04264; hypothetical protein 5675384 1043313 PP_4981 Pseudomonas putida KT2440 hypothetical protein NP_747083.1 5674770 R 160488 CDS NP_747084.1 26991659 1042479 complement(5675381..5675932) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01292; cytochrome B561 5675932 1042479 PP_4982 Pseudomonas putida KT2440 cytochrome B561 NP_747084.1 5675381 R 160488 CDS NP_747085.1 26991660 1042511 complement(5676137..5677996) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01593; amine oxidase 5677996 1042511 PP_4983 Pseudomonas putida KT2440 amine oxidase NP_747085.1 5676137 R 160488 CDS NP_747086.1 26991661 1043908 5678367..5679773 1 NC_002947.3 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 5679773 bioA 1043908 bioA Pseudomonas putida KT2440 adenosylmethionine-8-amino-7-oxononanoate aminotransferase NP_747086.1 5678367 D 160488 CDS NP_747087.1 26991662 1043372 5679937..5680656 1 NC_002947.3 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 5680656 1043372 PP_4985 Pseudomonas putida KT2440 16S ribosomal RNA methyltransferase RsmE NP_747087.1 5679937 D 160488 CDS NP_747088.1 26991663 1041617 complement(5680657..5681274) 1 NC_002947.3 similar to GB:M27339, and PID:540472; identified by sequence similarity; hemolysin III family channel protein 5681274 1041617 PP_4986 Pseudomonas putida KT2440 hemolysin III family channel protein NP_747088.1 5680657 R 160488 CDS NP_747089.1 26991664 1042298 complement(5681477..5681950) 1 NC_002947.3 chemotaxis protein CheW 5681950 1042298 PP_4987 Pseudomonas putida KT2440 chemotaxis protein CheW NP_747089.1 5681477 R 160488 CDS NP_747090.1 26991665 1042467 complement(5681943..5686883) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01387; chemotaxis protein CheA 5686883 1042467 PP_4988 Pseudomonas putida KT2440 chemotaxis protein CheA NP_747090.1 5681943 R 160488 CDS NP_747091.1 26991666 1042444 complement(5686896..5688956) 1 NC_002947.3 similar to GB:Z15114, SP:P05129, PID:35497, GB:Z15114, SP:P05129, and PID:35497; identified by sequence similarity; methyl-accepting chemotaxis sensory transducer 5688956 pilJ 1042444 pilJ Pseudomonas putida KT2440 methyl-accepting chemotaxis sensory transducer NP_747091.1 5686896 R 160488 CDS NP_747092.1 26991667 1041636 complement(5688968..5689522) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01584; type IV pili signal transduction protein PilI 5689522 pilI 1041636 pilI Pseudomonas putida KT2440 type IV pili signal transduction protein PilI NP_747092.1 5688968 R 160488 CDS NP_747093.1 26991668 1042188 complement(5689519..5689884) 1 NC_002947.3 similar to GB:M29877, SP:P04066, PID:1335066, PID:178409, PID:182779, PID:182788, and PID:182790; identified by sequence similarity; response regulator receiver protein 5689884 pilH 1042188 pilH Pseudomonas putida KT2440 response regulator receiver protein NP_747093.1 5689519 R 160488 CDS NP_747094.1 26991669 1041886 complement(5689932..5690333) 1 NC_002947.3 similar to GB:X07898, SP:P02585, PID:1220372, PID:339736, PID:36729, GB:X07898, SP:P02585, PID:1220372, PID:339736, and PID:36729; identified by sequence similarity; response regulator receiver protein 5690333 pilG 1041886 pilG Pseudomonas putida KT2440 response regulator receiver protein NP_747094.1 5689932 R 160488 CDS NP_747095.1 26991670 1042200 5690572..5691525 1 NC_002947.3 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 5691525 gshB 1042200 gshB Pseudomonas putida KT2440 glutathione synthetase NP_747095.1 5690572 D 160488 CDS NP_747096.1 26991671 1042505 5691617..5692522 1 NC_002947.3 identified by match to PFAM protein family HMM PF03544; TonB family protein 5692522 1042505 PP_4994 Pseudomonas putida KT2440 TonB family protein NP_747096.1 5691617 D 160488 CDS NP_747097.1 26991672 1046092 5692692..5693261 1 NC_002947.3 similar to GP:10442816, and GP:10442816; identified by sequence similarity; hypothetical protein 5693261 algH 1046092 algH Pseudomonas putida KT2440 hypothetical protein NP_747097.1 5692692 D 160488 CDS NP_747098.1 26991673 1043208 5693261..5693686 1 NC_002947.3 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 5693686 1043208 PP_4996 Pseudomonas putida KT2440 Holliday junction resolvase-like protein NP_747098.1 5693261 D 160488 CDS NP_747099.1 26991674 1042230 5693736..5694254 1 NC_002947.3 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 5694254 pyrR 1042230 pyrR Pseudomonas putida KT2440 bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase NP_747099.1 5693736 D 160488 CDS NP_747100.1 26991675 1042990 5694267..5695271 1 NC_002947.3 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 5695271 pyrB 1042990 pyrB Pseudomonas putida KT2440 aspartate carbamoyltransferase NP_747100.1 5694267 D 160488 CDS NP_747101.1 26991676 1046107 5695268..5696539 1 NC_002947.3 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 5696539 pyrC 1046107 pyrC Pseudomonas putida KT2440 dihydroorotase NP_747101.1 5695268 D 160488 CDS NP_747102.1 26991677 1046116 5696751..5697281 1 NC_002947.3 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 5697281 hslV 1046116 hslV Pseudomonas putida KT2440 ATP-dependent protease peptidase subunit NP_747102.1 5696751 D 160488 CDS NP_747103.1 26991678 1043680 5697358..5698701 1 NC_002947.3 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 5698701 hslU 1043680 hslU Pseudomonas putida KT2440 ATP-dependent protease ATP-binding subunit HslU NP_747103.1 5697358 D 160488 CDS NP_747104.1 26991679 1043912 5698868..5699245 1 NC_002947.3 similar to GB:M96233, GB:M96234, GB:M99421, GB:M99422, GB:X68677, GB:X56837, SP:P09488, SP:Q03013, PID:306817, PID:306819, and PID:31937; identified by sequence similarity; hypothetical protein 5699245 1043912 PP_5002 Pseudomonas putida KT2440 hypothetical protein NP_747104.1 5698868 D 160488 CDS NP_747105.1 26991680 1041855 5699514..5701193 1 NC_002947.3 similar to GB:Z19054, SP:P35222, PID:38520, PID:860988, GB:Z19054, SP:P35222, PID:38520, and PID:860988; identified by sequence similarity; poly(3-hydroxyalkanoate) polymerase 1 5701193 phaA 1041855 phaA Pseudomonas putida KT2440 poly(3-hydroxyalkanoate) polymerase 1 NP_747105.1 5699514 D 160488 CDS NP_747106.1 26991681 1042474 5701256..5702107 1 NC_002947.3 similar to GB:M57763, SP:P26438, PID:178989, GB:M57763, SP:P26438, and PID:178989; identified by sequence similarity; poly(3-hydroxyalkanoate) depolymerase 5702107 1042474 PP_5004 Pseudomonas putida KT2440 poly(3-hydroxyalkanoate) depolymerase NP_747106.1 5701256 D 160488 CDS NP_747107.1 26991682 1041897 5702157..5703839 1 NC_002947.3 similar to GB:X66975, GB:X60648, GB:X65371, GB:X62006, GB:X65372, SP:P26599, PID:32354, PID:35770, PID:35772, GB:X66975, GB:X60648, GB:X65371, GB:X62006, GB:X65372, SP:P26599, PID:32354, PID:35770, and PID:35772; identified by sequence similarity; poly(3-hydroxyalkanoate) polymerase 2 5703839 phaC 1041897 phaC Pseudomonas putida KT2440 poly(3-hydroxyalkanoate) polymerase 2 NP_747107.1 5702157 D 160488 CDS NP_747108.1 26991683 1042945 5703852..5704466 1 NC_002947.3 similar to GP:4104926, and GP:4062971; identified by sequence similarity; TetR family transcriptional regulator 5704466 1042945 PP_5006 Pseudomonas putida KT2440 TetR family transcriptional regulator NP_747108.1 5703852 D 160488 CDS NP_747109.1 26991684 1044159 complement(5704578..5705363) 1 NC_002947.3 similar to GP:4104925, and GP:4104925; identified by sequence similarity; poly(hydroxyalkanoate) granule-associated protein 5705363 1044159 PP_5007 Pseudomonas putida KT2440 poly(hydroxyalkanoate) granule-associated protein NP_747109.1 5704578 R 160488 CDS NP_747110.1 26991685 1043662 complement(5705374..5705793) 1 NC_002947.3 similar to GP:3955016, and GP:4104924; identified by sequence similarity; poly(hydroxyalkanoate) granule-associated protein 5705793 1043662 PP_5008 Pseudomonas putida KT2440 poly(hydroxyalkanoate) granule-associated protein NP_747110.1 5705374 R 160488 CDS NP_747111.1 26991686 1042953 5705974..5710734 1 NC_002947.3 hypothetical protein 5710734 1042953 PP_5009 Pseudomonas putida KT2440 hypothetical protein NP_747111.1 5705974 D 160488 CDS NP_747112.1 26991687 1044659 complement(5710753..5711088) 1 NC_002947.3 similar to GP:3955015, and GP:3955015; identified by sequence similarity; hypothetical protein 5711088 1044659 PP_5010 Pseudomonas putida KT2440 hypothetical protein NP_747112.1 5710753 R 160488 CDS NP_747113.1 26991688 1044728 5711153..5711923 1 NC_002947.3 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 5711923 ubiE 1044728 ubiE Pseudomonas putida KT2440 ubiquinone/menaquinone biosynthesis methyltransferase NP_747113.1 5711153 D 160488 CDS NP_747114.1 26991689 1044472 5711923..5712546 1 NC_002947.3 hypothetical protein 5712546 1044472 PP_5012 Pseudomonas putida KT2440 hypothetical protein NP_747114.1 5711923 D 160488 CDS NP_747115.1 26991690 1042612 5714237..5714629 1 NC_002947.3 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 5714629 hisI 1042612 hisI Pseudomonas putida KT2440 phosphoribosyl-AMP cyclohydrolase NP_747115.1 5714237 D 160488 CDS NP_747116.1 26991691 1041782 5714631..5714966 1 NC_002947.3 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 5714966 hisE 1041782 hisE Pseudomonas putida KT2440 phosphoribosyl-ATP pyrophosphatase NP_747116.1 5714631 D 160488 CDS NP_747117.1 26991692 1042998 5715049..5715321 1 NC_002947.3 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin-arginine translocation protein TatA 5715321 tatA 1042998 tatA Pseudomonas putida KT2440 twin-arginine translocation protein TatA NP_747117.1 5715049 D 160488 CDS NP_747118.1 26991693 1042951 5715325..5715702 1 NC_002947.3 Required for correct localization of precursor proteins bearing signal peptides with the twin arginine conserved motif; sec-independent translocase 5715702 tatB 1042951 tatB Pseudomonas putida KT2440 sec-independent translocase NP_747118.1 5715325 D 160488 CDS NP_747119.1 26991694 1042473 5715699..5716487 1 NC_002947.3 identified by match to PFAM protein family HMM PF00902; Sec-independent protein translocase subunit TatC 5716487 tatC-2 1042473 tatC-2 Pseudomonas putida KT2440 Sec-independent protein translocase subunit TatC NP_747119.1 5715699 D 160488 CDS NP_747120.1 26991695 1045175 5716484..5717191 1 NC_002947.3 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 5717191 1045175 PP_5019 Pseudomonas putida KT2440 16S ribosomal RNA methyltransferase RsmE NP_747120.1 5716484 D 160488 CDS NP_747121.1 26991696 1042670 5717293..5719209 1 NC_002947.3 identified by match to PFAM protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer 5719209 1042670 PP_5020 Pseudomonas putida KT2440 methyl-accepting chemotaxis sensory transducer NP_747121.1 5717293 D 160488 CDS NP_747122.1 26991697 1045912 5719467..5721410 1 NC_002947.3 identified by match to PFAM protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer 5721410 1045912 PP_5021 Pseudomonas putida KT2440 methyl-accepting chemotaxis sensory transducer NP_747122.1 5719467 D 160488 CDS NP_747123.1 26991698 1045246 complement(5721520..5722254) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00005; amino acid ABC transporter ATP-binding protein 5722254 1045246 PP_5022 Pseudomonas putida KT2440 amino acid ABC transporter ATP-binding protein NP_747123.1 5721520 R 160488 CDS NP_747124.1 26991699 1045237 complement(5722247..5723209) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01726; polar amino acid ABC transporter inner membrane subunit 5723209 1045237 PP_5023 Pseudomonas putida KT2440 polar amino acid ABC transporter inner membrane subunit NP_747124.1 5722247 R 160488 CDS NP_747125.1 26991700 1043376 complement(5723289..5724089) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00497; amino acid ABC transporter substrate-binding protein 5724089 1043376 PP_5024 Pseudomonas putida KT2440 amino acid ABC transporter substrate-binding protein NP_747125.1 5723289 R 160488 CDS NP_747126.1 26991701 1044479 complement(5724383..5726956) 1 NC_002947.3 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 5726956 mdoH 1044479 mdoH Pseudomonas putida KT2440 glucosyltransferase MdoH NP_747126.1 5724383 R 160488 CDS NP_747127.1 26991702 1043405 complement(5726949..5728628) 1 NC_002947.3 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 5728628 mdoG 1043405 mdoG Pseudomonas putida KT2440 glucan biosynthesis protein G NP_747127.1 5726949 R 160488 CDS NP_747128.1 26991703 1042703 complement(5728952..5729389) 1 NC_002947.3 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 5729389 dtD 1042703 dtD Pseudomonas putida KT2440 D-tyrosyl-tRNA(Tyr) deacylase NP_747128.1 5728952 R 160488 CDS NP_747129.1 26991704 1045446 complement(5729386..5730357) 1 NC_002947.3 similar to GB:X62583, and PID:42775; identified by sequence similarity; proline iminopeptidase 5730357 pip 1045446 pip Pseudomonas putida KT2440 proline iminopeptidase NP_747129.1 5729386 R 160488 CDS NP_747130.1 26991705 1046082 complement(5730527..5731330) 1 NC_002947.3 similar to GP:2642341, and GP:2642341; identified by sequence similarity; N-formylglutamate amidohydrolase 5731330 hutG 1046082 hutG Pseudomonas putida KT2440 N-formylglutamate amidohydrolase NP_747130.1 5730527 R 160488 CDS NP_747131.1 26991706 1044498 complement(5731341..5732546) 1 NC_002947.3 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 5732546 hutI 1044498 hutI Pseudomonas putida KT2440 imidazolonepropionase NP_747131.1 5731341 R 160488 CDS NP_747132.1 26991707 1044217 complement(5732562..5733965) 1 NC_002947.3 similar to GP:2642339; identified by sequence similarity; amino acid ABC transporter permease 5733965 1044217 PP_5031 Pseudomonas putida KT2440 amino acid ABC transporter permease NP_747132.1 5732562 R 160488 CDS NP_747133.1 26991708 1042841 complement(5734122..5735654) 1 NC_002947.3 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 5735654 hutH 1042841 hutH Pseudomonas putida KT2440 histidine ammonia-lyase NP_747133.1 5734122 R 160488 CDS NP_747134.1 26991709 1042837 complement(5735763..5737436) 1 NC_002947.3 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 5737436 hutU 1042837 hutU Pseudomonas putida KT2440 urocanate hydratase NP_747134.1 5735763 R 160488 CDS NP_747135.1 26991710 1043104 complement(5737638..5738210) 1 NC_002947.3 hypothetical protein 5738210 1043104 PP_5034 Pseudomonas putida KT2440 hypothetical protein NP_747135.1 5737638 R 160488 CDS NP_747136.1 26991711 1043694 complement(5738207..5738953) 1 NC_002947.3 similar to SP:P22773, GB:L11701, SP:P80108, SP:Q15127, and PID:388763; identified by sequence similarity; histidine utilization repressor 5738953 hutC 1043694 hutC Pseudomonas putida KT2440 histidine utilization repressor NP_747136.1 5738207 R 160488 CDS NP_747137.1 26991712 1043676 5739062..5740426 1 NC_002947.3 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase 5740426 1043676 PP_5036 Pseudomonas putida KT2440 N-formimino-L-glutamate deiminase NP_747137.1 5739062 D 160488 CDS NP_747138.1 26991713 1043888 complement(5740497..5741069) 1 NC_002947.3 outer membrane lipoprotein Blc 5741069 1043888 PP_5037 Pseudomonas putida KT2440 outer membrane lipoprotein Blc NP_747138.1 5740497 R 160488 CDS NP_747139.1 26991714 1041820 complement(5741066..5741320) 1 NC_002947.3 hypothetical protein 5741320 1041820 PP_5038 Pseudomonas putida KT2440 hypothetical protein NP_747139.1 5741066 R 160488 CDS NP_747140.1 26991715 1041600 complement(5741548..5742144) 1 NC_002947.3 hypothetical protein 5742144 1041600 PP_5039 Pseudomonas putida KT2440 hypothetical protein NP_747140.1 5741548 R 160488 CDS NP_747141.1 26991716 1043617 complement(5742148..5743158) 1 NC_002947.3 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 5743158 fbp 1043617 fbp Pseudomonas putida KT2440 fructose-1,6-bisphosphatase NP_747141.1 5742148 R 160488 CDS NP_747142.1 26991717 1044574 complement(5743405..5745855) 1 NC_002947.3 similar to GB:L08237, and PID:950411; identified by sequence similarity; glycogen/starch/alpha-glucan phosphorylase 5745855 glgP 1044574 glgP Pseudomonas putida KT2440 glycogen/starch/alpha-glucan phosphorylase NP_747142.1 5743405 R 160488 CDS NP_747143.1 26991718 1045987 5745947..5746444 1 NC_002947.3 similar to GP:9951085, and GP:9951085; identified by sequence similarity; hypothetical protein 5746444 1045987 PP_5042 Pseudomonas putida KT2440 hypothetical protein NP_747143.1 5745947 D 160488 CDS NP_747144.1 26991719 1042349 complement(5746543..5748003) 1 NC_002947.3 similar to GP:6118365; identified by sequence similarity; hypothetical protein 5748003 1042349 PP_5043 Pseudomonas putida KT2440 hypothetical protein NP_747144.1 5746543 R 160488 CDS NP_747145.1 26991720 1041914 complement(5748150..5749970) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01394; GTP-binding protein TypA 5749970 1041914 PP_5044 Pseudomonas putida KT2440 GTP-binding protein TypA NP_747145.1 5748150 R 160488 CDS NP_747146.1 26991721 1041702 complement(5750099..5751553) 1 NC_002947.3 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 5751553 thiI 1041702 thiI Pseudomonas putida KT2440 thiamine biosynthesis protein ThiI NP_747146.1 5750099 R 160488 CDS NP_747147.1 26991722 1044366 5752024..5753430 1 NC_002947.3 similar to SP:P06711; identified by sequence similarity; glutamine synthetase, type I 5753430 glnA 1044366 glnA Pseudomonas putida KT2440 glutamine synthetase, type I NP_747147.1 5752024 D 160488 CDS NP_747148.1 26991723 1043403 5753796..5754881 1 NC_002947.3 identified by match to PFAM protein family HMM PF02518; signal transduction histidine kinase, nitrogen specific, NtrB 5754881 ntrB 1043403 ntrB Pseudomonas putida KT2440 signal transduction histidine kinase, nitrogen specific, NtrB NP_747148.1 5753796 D 160488 CDS NP_747149.1 26991724 1043594 5754878..5756314 1 NC_002947.3 similar to GP:9951423; identified by sequence similarity; Fis family transcriptional regulator 5756314 ntrC 1043594 ntrC Pseudomonas putida KT2440 Fis family transcriptional regulator NP_747149.1 5754878 D 160488 CDS NP_747150.1 26991725 1043406 complement(5756580..5756687) 1 NC_002947.3 hypothetical protein 5756687 1043406 PP_5049 Pseudomonas putida KT2440 hypothetical protein NP_747150.1 5756580 R 160488 CDS NP_747151.1 26991726 1043400 5757002..5757967 1 NC_002947.3 similar to GP:7741879; identified by sequence similarity; ISPpu10, transposase 5757967 1043400 PP_5050 Pseudomonas putida KT2440 ISPpu10, transposase NP_747151.1 5757002 D 160488 CDS NP_747152.1 26991727 1042794 complement(5758485..5758922) 1 NC_002947.3 similar to GP:9951425, and GP:9951425; identified by sequence similarity; hypothetical protein 5758922 1042794 PP_5051 Pseudomonas putida KT2440 hypothetical protein NP_747152.1 5758485 R 160488 CDS NP_747153.1 26991728 1043616 5758909..5759382 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00185; RNA methyltransferase 5759382 1043616 PP_5052 Pseudomonas putida KT2440 RNA methyltransferase NP_747153.1 5758909 D 160488 CDS NP_747154.1 26991729 1042615 complement(5759538..5760023) 1 NC_002947.3 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 5760023 secB 1042615 secB Pseudomonas putida KT2440 preprotein translocase subunit SecB NP_747154.1 5759538 R 160488 CDS NP_747155.1 26991730 1041766 complement(5760063..5760317) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00462; glutaredoxin 3 5760317 1041766 PP_5054 Pseudomonas putida KT2440 glutaredoxin 3 NP_747155.1 5760063 R 160488 CDS NP_747156.1 26991731 1042614 complement(5760319..5760732) 1 NC_002947.3 similar to GP:9951429; identified by sequence similarity; rhodanese domain-containing protein 5760732 1042614 PP_5055 Pseudomonas putida KT2440 rhodanese domain-containing protein NP_747156.1 5760319 R 160488 CDS NP_747157.1 26991732 1044042 5760940..5762475 1 NC_002947.3 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 5762475 pgm 1044042 pgm Pseudomonas putida KT2440 phosphoglyceromutase NP_747157.1 5760940 D 160488 CDS NP_747158.1 26991733 1043401 5762616..5763932 1 NC_002947.3 identified by match to PFAM protein family HMM PF01551; M24/M37 family peptidase 5763932 1043401 PP_5057 Pseudomonas putida KT2440 M24/M37 family peptidase NP_747158.1 5762616 D 160488 CDS NP_747159.1 26991734 1041641 5764011..5765327 1 NC_002947.3 identified by match to PFAM protein family HMM PF03572; carboxyl-terminal protease 5765327 1041641 PP_5058 Pseudomonas putida KT2440 carboxyl-terminal protease NP_747159.1 5764011 D 160488 CDS NP_747160.1 26991735 1041803 5765336..5766103 1 NC_002947.3 hypothetical protein 5766103 1041803 PP_5059 Pseudomonas putida KT2440 hypothetical protein NP_747160.1 5765336 D 160488 CDS NP_747161.1 26991736 1043404 complement(5766147..5770862) 1 NC_002947.3 hypothetical protein 5770862 1043404 PP_5060 Pseudomonas putida KT2440 hypothetical protein NP_747161.1 5766147 R 160488 CDS NP_747162.1 26991737 1044579 complement(5770950..5772953) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04173; choline/carnitine/betaine transporter 5772953 1044579 PP_5061 Pseudomonas putida KT2440 choline/carnitine/betaine transporter NP_747162.1 5770950 R 160488 CDS NP_747163.1 26991738 1041597 complement(5773330..5773875) 1 NC_002947.3 hypothetical protein 5773875 1041597 PP_5062 Pseudomonas putida KT2440 hypothetical protein NP_747163.1 5773330 R 160488 CDS NP_747164.1 26991739 1041862 5774125..5775597 1 NC_002947.3 catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase 5775597 betB 1041862 betB Pseudomonas putida KT2440 betaine aldehyde dehydrogenase NP_747164.1 5774125 D 160488 CDS NP_747165.1 26991740 1043008 5775675..5777372 1 NC_002947.3 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 5777372 betA 1043008 betA Pseudomonas putida KT2440 choline dehydrogenase NP_747165.1 5775675 D 160488 CDS NP_747166.1 26991741 1041774 complement(5777415..5779565) 1 NC_002947.3 hypothetical protein 5779565 1041774 PP_5065 Pseudomonas putida KT2440 hypothetical protein NP_747166.1 5777415 R 160488 CDS NP_747167.2 161378116 1041783 5779739..5781481 1 NC_002947.3 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 5781481 1041783 PP_5066 Pseudomonas putida KT2440 potassium/proton antiporter NP_747167.2 5779739 D 160488 CDS NP_747168.1 26991743 1044653 5781517..5784825 1 NC_002947.3 small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA 5784825 1044653 PP_5067 Pseudomonas putida KT2440 potassium efflux protein KefA NP_747168.1 5781517 D 160488 CDS NP_747169.1 26991744 1042616 5784826..5786448 1 NC_002947.3 identified by match to PFAM protein family HMM PF02696; hypothetical protein 5786448 1042616 PP_5068 Pseudomonas putida KT2440 hypothetical protein NP_747169.1 5784826 D 160488 CDS NP_747170.1 26991745 1042006 5786579..5787013 1 NC_002947.3 similar to GB:K01383, SP:P02795, SP:P04731, SP:P04732, SP:P04733, SP:P07438, SP:P13640, SP:P25713, SP:P80294, SP:P80295, SP:P80296, SP:P80297, PID:386864, PID:517349, PID:517351, and PID:914851; identified by sequence similarity; thioredoxin 5787013 trxC 1042006 trxC Pseudomonas putida KT2440 thioredoxin NP_747170.1 5786579 D 160488 CDS NP_747171.1 26991746 1041779 complement(5787010..5787783) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00991; ParA family protein 5787783 1041779 PP_5070 Pseudomonas putida KT2440 ParA family protein NP_747171.1 5787010 R 160488 CDS NP_747172.1 26991747 1041805 complement(5787860..5788759) 1 NC_002947.3 similar to GP:9951318, and GP:9951318; identified by sequence similarity; LysR family transcriptional regulator 5788759 1041805 PP_5071 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_747172.1 5787860 R 160488 CDS NP_747173.1 26991748 1041661 5788835..5790112 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00880; major facilitator family transporter 5790112 1041661 PP_5072 Pseudomonas putida KT2440 major facilitator family transporter NP_747173.1 5788835 D 160488 CDS NP_747174.1 26991749 1042949 complement(5790180..5790587) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04076; hypothetical protein 5790587 1042949 PP_5073 Pseudomonas putida KT2440 hypothetical protein NP_747174.1 5790180 R 160488 CDS NP_747175.1 26991750 1041992 complement(5790644..5791708) 1 NC_002947.3 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 5791708 hemE 1041992 hemE Pseudomonas putida KT2440 uroporphyrinogen decarboxylase NP_747175.1 5790644 R 160488 CDS NP_747176.1 26991751 1041787 complement(5791903..5793321) 1 NC_002947.3 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 5793321 gltD 1041787 gltD Pseudomonas putida KT2440 glutamate synthase subunit beta NP_747176.1 5791903 R 160488 CDS NP_747177.1 26991752 1045099 complement(5793445..5797890) 1 NC_002947.3 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 5797890 gltB 1045099 gltB Pseudomonas putida KT2440 glutamate synthase subunit alpha NP_747177.1 5793445 R 160488 CDS NP_747178.1 26991753 1042934 complement(5798264..5799853) 1 NC_002947.3 similar to GP:9951327, and GP:9951327; identified by sequence similarity; sporulation domain-containing protein 5799853 1042934 PP_5077 Pseudomonas putida KT2440 sporulation domain-containing protein NP_747178.1 5798264 R 160488 CDS NP_747179.1 26991754 1045947 complement(5799869..5800966) 1 NC_002947.3 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 5800966 aroB 1045947 aroB Pseudomonas putida KT2440 3-dehydroquinate synthase NP_747179.1 5799869 R 160488 CDS NP_747180.1 26991755 1043097 complement(5801063..5801581) 1 NC_002947.3 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 5801581 aroK 1043097 aroK Pseudomonas putida KT2440 shikimate kinase NP_747180.1 5801063 R 160488 CDS NP_747181.1 26991756 1041901 complement(5801586..5802848) 1 NC_002947.3 similar to GP:9951330; identified by sequence similarity; type IV pilus secretin PilQ 5802848 pilQ 1041901 pilQ Pseudomonas putida KT2440 type IV pilus secretin PilQ NP_747181.1 5801586 R 160488 CDS NP_747182.1 26991757 1041776 complement(5802772..5803788) 1 NC_002947.3 In P. aeruginosa the cluster is pilQ-P-O-N-M. The C-terminal half of P. aeruginosa PilO has 24 % identity to the N-terminus of this protein and the 79 aa C- terminus of P. aeruginosa PilP has 37 % identity to the C-terminus of this protein.; similar to GB:M86752, SP:P31948, and PID:184565; identified by sequence similarity; type IV pili biogenesis protein 5803788 1041776 PP_5081 Pseudomonas putida KT2440 type IV pili biogenesis protein NP_747182.1 5802772 R 160488 CDS NP_747183.1 26991758 1041801 complement(5803785..5804321) 1 NC_002947.3 fimbrial assembly family protein 5804321 pilN 1041801 pilN Pseudomonas putida KT2440 fimbrial assembly family protein NP_747183.1 5803785 R 160488 CDS NP_747184.1 26991759 1042010 complement(5804318..5805199) 1 NC_002947.3 similar to GP:895925, GB:D90040, GB:U23052, GB:U23434, GB:D10870, GB:D10871, GB:D10872, GB:U53473, SP:P11245, PID:1297332, PID:219412, PID:219416, PID:219872, PID:219875, PID:219878, PID:28228, PID:727413, and PID:727457; identified by sequence similarity; type IV pili biogenesis protein PilM 5805199 1042010 PP_5083 Pseudomonas putida KT2440 type IV pili biogenesis protein PilM NP_747184.1 5804318 R 160488 CDS NP_747185.1 26991760 1045110 5805403..5807856 1 NC_002947.3 similar to GP:1763284, and SP:P02918; identified by sequence similarity; penicillin-binding protein 5807856 1045110 PP_5084 Pseudomonas putida KT2440 penicillin-binding protein NP_747185.1 5805403 D 160488 CDS NP_747186.1 26991761 1041799 complement(5808011..5809279) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00390; malic enzyme 5809279 maeB 1041799 maeB Pseudomonas putida KT2440 malic enzyme NP_747186.1 5808011 R 160488 CDS NP_747187.1 26991762 1043361 complement(5809457..5810224) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00565; nuclease 5810224 1043361 PP_5086 Pseudomonas putida KT2440 nuclease NP_747187.1 5809457 R 160488 CDS NP_747188.2 161378115 1043893 complement(5810281..5810496) 1 NC_002947.3 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 5810496 rpmE 1043893 rpmE Pseudomonas putida KT2440 50S ribosomal protein L31 NP_747188.2 5810281 R 160488 CDS NP_747189.1 26991764 1043212 5810664..5812883 1 NC_002947.3 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 5812883 priA 1043212 priA Pseudomonas putida KT2440 primosome assembly protein PriA NP_747189.1 5810664 D 160488 CDS NP_747190.1 26991765 1041719 5813071..5814807 1 NC_002947.3 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 5814807 argS 1041719 argS Pseudomonas putida KT2440 arginyl-tRNA synthetase NP_747190.1 5813071 D 160488 CDS NP_747191.1 26991766 1041997 5814809..5815507 1 NC_002947.3 sporulation domain-containing protein 5815507 1041997 PP_5090 Pseudomonas putida KT2440 sporulation domain-containing protein NP_747191.1 5814809 D 160488 CDS NP_747192.1 26991767 1041866 complement(5815598..5816017) 1 NC_002947.3 hypothetical protein 5816017 1041866 PP_5091 Pseudomonas putida KT2440 hypothetical protein NP_747192.1 5815598 R 160488 CDS NP_747193.1 26991768 1041784 5816182..5816805 1 NC_002947.3 identified by match to PFAM protein family HMM PF00877; NLP/P60 protein 5816805 1041784 PP_5092 Pseudomonas putida KT2440 NLP/P60 protein NP_747193.1 5816182 D 160488 CDS NP_747194.1 26991769 1042013 complement(5816934..5817944) 1 NC_002947.3 similar to GB:X52425, SP:P24394, and PID:33834; identified by sequence similarity; twitching motility protein 5817944 pilT 1042013 pilT Pseudomonas putida KT2440 twitching motility protein NP_747194.1 5816934 R 160488 CDS NP_747195.1 26991770 1044694 5817998..5818684 1 NC_002947.3 similar to GB:M13143, SP:P03952, and PID:190263; identified by sequence similarity; alanine racemase 5818684 1044694 PP_5094 Pseudomonas putida KT2440 alanine racemase NP_747195.1 5817998 D 160488 CDS NP_747196.1 26991771 1042622 5818723..5819541 1 NC_002947.3 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 5819541 proC-2 1042622 proC-2 Pseudomonas putida KT2440 pyrroline-5-carboxylate reductase NP_747196.1 5818723 D 160488 CDS NP_747197.1 26991772 1043013 5819552..5820142 1 NC_002947.3 identified by match to PFAM protein family HMM PF04020; hypothetical protein 5820142 1043013 PP_5096 Pseudomonas putida KT2440 hypothetical protein NP_747197.1 5819552 D 160488 CDS NP_747198.1 26991773 1046100 5820242..5821381 1 NC_002947.3 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 5821381 metX 1046100 metX Pseudomonas putida KT2440 homoserine O-acetyltransferase NP_747198.1 5820242 D 160488 CDS NP_747199.1 26991774 1042775 5821371..5822009 1 NC_002947.3 similar to GP:13540422; identified by sequence similarity; methionine biosynthesis protein MetW 5822009 metW 1042775 metW Pseudomonas putida KT2440 methionine biosynthesis protein MetW NP_747199.1 5821371 D 160488 CDS NP_747200.1 26991775 1045257 5822032..5822466 1 NC_002947.3 hypothetical protein 5822466 1045257 PP_5099 Pseudomonas putida KT2440 hypothetical protein NP_747200.1 5822032 D 160488 CDS NP_747201.1 26991776 1042681 5822463..5823059 1 NC_002947.3 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 5823059 1042681 PP_5100 Pseudomonas putida KT2440 deoxyribonucleotide triphosphate pyrophosphatase NP_747201.1 5822463 D 160488 CDS NP_747202.1 26991777 1043153 5823056..5824231 1 NC_002947.3 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 5824231 1043153 PP_5101 Pseudomonas putida KT2440 coproporphyrinogen III oxidase NP_747202.1 5823056 D 160488 CDS NP_747203.1 26991778 1043925 5824241..5824567 1 NC_002947.3 hypothetical protein 5824567 1043925 PP_5102 Pseudomonas putida KT2440 hypothetical protein NP_747203.1 5824241 D 160488 CDS NP_747204.1 26991779 1046074 complement(5824741..5825463) 1 NC_002947.3 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 5825463 trmB 1046074 trmB Pseudomonas putida KT2440 tRNA (guanine-N(7)-)-methyltransferase NP_747204.1 5824741 R 160488 CDS NP_747205.1 26991780 1042149 complement(5825473..5826285) 1 NC_002947.3 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 5826285 thiG 1042149 thiG Pseudomonas putida KT2440 thiazole synthase NP_747205.1 5825473 R 160488 CDS NP_747206.1 26991781 1042679 complement(5826340..5826618) 1 NC_002947.3 with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS 5826618 1042679 PP_5105 Pseudomonas putida KT2440 sulfur carrier protein ThiS NP_747206.1 5826340 R 160488 CDS NP_747207.1 26991782 1041859 complement(5826643..5827014) 1 NC_002947.3 similar to GP:9946231; identified by sequence similarity; hypothetical protein 5827014 1041859 PP_5106 Pseudomonas putida KT2440 hypothetical protein NP_747207.1 5826643 R 160488 CDS NP_747208.1 26991783 1041810 5827079..5827789 1 NC_002947.3 glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 5827789 mtgA 1041810 mtgA Pseudomonas putida KT2440 monofunctional biosynthetic peptidoglycan transglycosylase NP_747208.1 5827079 D 160488 CDS NP_747209.1 26991784 1042633 complement(5827988..5828842) 1 NC_002947.3 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 5828842 rpoH 1042633 rpoH Pseudomonas putida KT2440 RNA polymerase factor sigma-32 NP_747209.1 5827988 R 160488 CDS NP_747210.1 26991785 1042632 complement(5828954..5829979) 1 NC_002947.3 similar to GP:5821403; identified by sequence similarity; hypothetical protein 5829979 ftsX 1042632 ftsX Pseudomonas putida KT2440 hypothetical protein NP_747210.1 5828954 R 160488 CDS NP_747211.1 26991786 1042022 complement(5829976..5830653) 1 NC_002947.3 similar to GB:K03474, GB:A18521, SP:P03971, PID:386953, and PID:512453; identified by sequence similarity; cell division ATP-binding protein FtsE 5830653 ftsE 1042022 ftsE Pseudomonas putida KT2440 cell division ATP-binding protein FtsE NP_747211.1 5829976 R 160488 CDS NP_747212.1 26991787 1042021 complement(5830650..5832134) 1 NC_002947.3 similar to GP:9946225, GB:M95585, GB:X68985, PID:184224, and PID:402776; identified by sequence similarity; signal recognition particle-docking protein FtsY 5832134 ftsY 1042021 ftsY Pseudomonas putida KT2440 signal recognition particle-docking protein FtsY NP_747212.1 5830650 R 160488 CDS NP_747213.1 26991788 1041700 5832366..5833721 1 NC_002947.3 similar to GP:9946224; identified by sequence similarity; peptidase M16 domain-containing protein 5833721 1041700 PP_5112 Pseudomonas putida KT2440 peptidase M16 domain-containing protein NP_747213.1 5832366 D 160488 CDS NP_747214.1 26991789 1041956 5833714..5835204 1 NC_002947.3 identified by match to PFAM protein family HMM PF00675; peptidase M16 domain-containing protein 5835204 1041956 PP_5113 Pseudomonas putida KT2440 peptidase M16 domain-containing protein NP_747214.1 5833714 D 160488 CDS NP_747215.1 26991790 1046033 5835204..5835806 1 NC_002947.3 identified by match to PFAM protein family HMM PF03602; hypothetical protein 5835806 1046033 PP_5114 Pseudomonas putida KT2440 hypothetical protein NP_747215.1 5835204 D 160488 CDS NP_747216.1 26991791 1042116 5835897..5837198 1 NC_002947.3 similar to GP:9946224; identified by sequence similarity; peptidase M16 domain-containing protein 5837198 1042116 PP_5115 Pseudomonas putida KT2440 peptidase M16 domain-containing protein NP_747216.1 5835897 D 160488 CDS NP_747217.1 26991792 1041697 5837191..5838561 1 NC_002947.3 identified by match to PFAM protein family HMM PF00675; peptidase M16 domain-containing protein 5838561 1041697 PP_5116 Pseudomonas putida KT2440 peptidase M16 domain-containing protein NP_747217.1 5837191 D 160488 CDS NP_747218.1 26991793 1041781 5838622..5839614 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01250; alpha/beta hydrolase 5839614 1041781 PP_5117 Pseudomonas putida KT2440 alpha/beta hydrolase NP_747218.1 5838622 D 160488 CDS NP_747219.1 26991794 1042662 complement(5839717..5840571) 1 NC_002947.3 similar to SP:P97532; identified by sequence similarity; rhodanese domain-containing protein 5840571 1042662 PP_5118 Pseudomonas putida KT2440 rhodanese domain-containing protein NP_747219.1 5839717 R 160488 CDS NP_747220.1 26991795 1041789 complement(5840607..5841272) 1 NC_002947.3 similar to GP:9946218; identified by sequence similarity; TetR family transcriptional regulator 5841272 1041789 PP_5119 Pseudomonas putida KT2440 TetR family transcriptional regulator NP_747220.1 5840607 R 160488 CDS NP_747221.1 26991796 1041794 5841423..5842853 1 NC_002947.3 similar to GP:3336914; identified by sequence similarity; conifer aldehyde dehydrogenase 5842853 1041794 PP_5120 Pseudomonas putida KT2440 conifer aldehyde dehydrogenase NP_747221.1 5841423 D 160488 CDS NP_747222.1 26991797 1041842 5842864..5843349 1 NC_002947.3 hypothetical protein 5843349 1041842 PP_5121 Pseudomonas putida KT2440 hypothetical protein NP_747222.1 5842864 D 160488 CDS NP_747223.1 26991798 1041694 5843370..5844968 1 NC_002947.3 similar to GP:9946215; identified by sequence similarity; GMC family oxidoreductase 5844968 1041694 PP_5122 Pseudomonas putida KT2440 GMC family oxidoreductase NP_747223.1 5843370 D 160488 CDS NP_747224.1 26991799 1042055 5845081..5845566 1 NC_002947.3 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 5845566 coaD 1042055 coaD Pseudomonas putida KT2440 phosphopantetheine adenylyltransferase NP_747224.1 5845081 D 160488 CDS NP_747225.1 26991800 1042631 5845668..5845919 1 NC_002947.3 similar to SP:P00208; identified by sequence similarity; ferredoxin, 4Fe-4S 5845919 1042631 PP_5124 Pseudomonas putida KT2440 ferredoxin, 4Fe-4S NP_747225.1 5845668 D 160488 CDS NP_747226.1 26991801 1042634 complement(5846010..5846822) 1 NC_002947.3 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 5846822 mutM 1042634 mutM Pseudomonas putida KT2440 formamidopyrimidine-DNA glycosylase NP_747226.1 5846010 R 160488 CDS NP_747227.1 26991802 1041695 complement(5846826..5847596) 1 NC_002947.3 similar to GP:9946206, and GP:9946206; identified by sequence similarity; signal transduction protein 5847596 1041695 PP_5126 Pseudomonas putida KT2440 signal transduction protein NP_747227.1 5846826 R 160488 CDS NP_747228.1 26991803 1041912 5847820..5849016 1 NC_002947.3 identified by match to PFAM protein family HMM PF03602; hypothetical protein 5849016 1041912 PP_5127 Pseudomonas putida KT2440 hypothetical protein NP_747228.1 5847820 D 160488 CDS NP_747229.1 26991804 1046050 5849287..5851128 1 NC_002947.3 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 5851128 ilvD 1046050 ilvD Pseudomonas putida KT2440 dihydroxy-acid dehydratase NP_747229.1 5849287 D 160488 CDS NP_747230.1 26991805 1042606 complement(5851196..5852284) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01661; hypothetical protein 5852284 1042606 PP_5129 Pseudomonas putida KT2440 hypothetical protein NP_747230.1 5851196 R 160488 CDS NP_747231.1 26991806 1041785 complement(5852672..5853727) 1 NC_002947.3 similar to GP:9951606; identified by sequence similarity; hypothetical protein 5853727 1041785 PP_5130 Pseudomonas putida KT2440 hypothetical protein NP_747231.1 5852672 R 160488 CDS NP_747232.1 26991807 1042595 5853972..5855363 1 NC_002947.3 similar to SP:P31586, PID:42189, SP:P31586, and PID:42189; identified by sequence similarity; sodium:dicarboxylate symporter 5855363 1042595 PP_5131 Pseudomonas putida KT2440 sodium:dicarboxylate symporter NP_747232.1 5853972 D 160488 CDS NP_747233.1 26991808 1043319 complement(5855495..5856010) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00186; dihydrofolate reductase 5856010 folA 1043319 folA Pseudomonas putida KT2440 dihydrofolate reductase NP_747233.1 5855495 R 160488 CDS NP_747234.1 26991809 1041652 5856065..5857456 1 NC_002947.3 hypothetical protein 5857456 1041652 PP_5133 Pseudomonas putida KT2440 hypothetical protein NP_747234.1 5856065 D 160488 CDS NP_747235.1 26991810 1042601 5857443..5858813 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00650; hypothetical protein 5858813 1042601 PP_5134 Pseudomonas putida KT2440 hypothetical protein NP_747235.1 5857443 D 160488 CDS NP_747236.1 26991811 1041647 complement(5858951..5859976) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01547; ABC transporter substrate-binding protein 5859976 1041647 PP_5135 Pseudomonas putida KT2440 ABC transporter substrate-binding protein NP_747236.1 5858951 R 160488 CDS NP_747237.1 26991812 1041684 complement(5859995..5861719) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01581; ABC transporter permease 5861719 1041684 PP_5136 Pseudomonas putida KT2440 ABC transporter permease NP_747237.1 5859995 R 160488 CDS NP_747238.1 26991813 1041650 complement(5861721..5862779) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00955; ABC transporter ATP-binding protein 5862779 1041650 PP_5137 Pseudomonas putida KT2440 ABC transporter ATP-binding protein NP_747238.1 5861721 R 160488 CDS NP_747239.1 26991814 1042547 complement(5863010..5863879) 1 NC_002947.3 similar to GP:7579043; identified by sequence similarity; LysR family transcriptional regulator 5863879 1042547 PP_5138 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_747239.1 5863010 R 160488 CDS NP_747240.1 26991815 1041793 complement(5863889..5866141) 1 NC_002947.3 similar to GP:9949854, GB:L14542, SP:Q07444, and PID:292361; identified by sequence similarity; heavy metal translocating P-type ATPase 5866141 cadA-2 1041793 cadA-2 Pseudomonas putida KT2440 heavy metal translocating P-type ATPase NP_747240.1 5863889 R 160488 CDS NP_747241.1 26991816 1041693 5866225..5866668 1 NC_002947.3 identified by match to PFAM protein family HMM PF00376; MerR family transcriptional regulator 5866668 1041693 PP_5140 Pseudomonas putida KT2440 MerR family transcriptional regulator NP_747241.1 5866225 D 160488 CDS NP_747242.1 26991817 1042582 complement(5866725..5867696) 1 NC_002947.3 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 5867696 thyA 1042582 thyA Pseudomonas putida KT2440 thymidylate synthase NP_747242.1 5866725 R 160488 CDS NP_747243.1 26991818 1042598 complement(5867748..5868554) 1 NC_002947.3 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 5868554 lgt 1042598 lgt Pseudomonas putida KT2440 prolipoprotein diacylglyceryl transferase NP_747243.1 5867748 R 160488 CDS NP_747244.1 26991819 1042596 complement(5868571..5869353) 1 NC_002947.3 similar to GP:9946189; identified by sequence similarity; hypothetical protein 5869353 1042596 PP_5143 Pseudomonas putida KT2440 hypothetical protein NP_747244.1 5868571 R 160488 CDS NP_747245.1 26991820 1042588 5869484..5870230 1 NC_002947.3 similar to GP:9946187; identified by sequence similarity; hypothetical protein 5870230 1042588 PP_5144 Pseudomonas putida KT2440 hypothetical protein NP_747245.1 5869484 D 160488 CDS NP_747246.1 26991821 1042581 complement(5870364..5872643) 1 NC_002947.3 similar to GP:3641832; identified by sequence similarity; protein PtsP 5872643 ptsP 1042581 ptsP Pseudomonas putida KT2440 protein PtsP NP_747246.1 5870364 R 160488 CDS NP_747247.1 26991822 1042602 complement(5872666..5873145) 1 NC_002947.3 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 5873145 1042602 PP_5146 Pseudomonas putida KT2440 dinucleoside polyphosphate hydrolase NP_747247.1 5872666 R 160488 CDS NP_747248.1 26991823 1042578 5873287..5873943 1 NC_002947.3 similar to GP:9946183; identified by sequence similarity; HAD superfamily hydrolase 5873943 1042578 PP_5147 Pseudomonas putida KT2440 HAD superfamily hydrolase NP_747248.1 5873287 D 160488 CDS NP_747249.1 26991824 1041648 complement(5874074..5874499) 1 NC_002947.3 hypothetical protein 5874499 1041648 PP_5148 Pseudomonas putida KT2440 hypothetical protein NP_747249.1 5874074 R 160488 CDS NP_747250.1 26991825 1041646 complement(5874647..5876161) 1 NC_002947.3 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 5876161 ilvA-2 1041646 ilvA-2 Pseudomonas putida KT2440 threonine dehydratase NP_747250.1 5874647 R 160488 CDS NP_747251.1 26991826 1042566 5876295..5876969 1 NC_002947.3 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 5876969 rpiA 1042566 rpiA Pseudomonas putida KT2440 ribose-5-phosphate isomerase A NP_747251.1 5876295 D 160488 CDS NP_747252.1 26991827 1042573 complement(5877074..5877976) 1 NC_002947.3 similar to GP:9948021; identified by sequence similarity; SdiA-regulated domain-containing protein 5877976 1042573 PP_5151 Pseudomonas putida KT2440 SdiA-regulated domain-containing protein NP_747252.1 5877074 R 160488 CDS NP_747253.1 26991828 1042561 complement(5878067..5878987) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01436; SdiA-regulated domain-containing protein 5878987 1042561 PP_5152 Pseudomonas putida KT2440 SdiA-regulated domain-containing protein NP_747253.1 5878067 R 160488 CDS NP_747254.1 26991829 1042574 complement(5879170..5879835) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01557; fumarylacetoacetate (FAA) hydrolase 5879835 1042574 PP_5153 Pseudomonas putida KT2440 fumarylacetoacetate (FAA) hydrolase NP_747254.1 5879170 R 160488 CDS NP_747255.1 26991830 1042560 complement(5879862..5881229) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01679; FAD linked oxidase domain-containing protein 5881229 1042560 PP_5154 Pseudomonas putida KT2440 FAD linked oxidase domain-containing protein NP_747255.1 5879862 R 160488 CDS NP_747256.1 26991831 1042568 5881431..5882660 1 NC_002947.3 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 5882660 serA 1042568 serA Pseudomonas putida KT2440 D-3-phosphoglycerate dehydrogenase NP_747256.1 5881431 D 160488 CDS NP_747257.1 26991832 1042579 complement(5882708..5883184) 1 NC_002947.3 hypothetical protein 5883184 1042579 PP_5156 Pseudomonas putida KT2440 hypothetical protein NP_747257.1 5882708 R 160488 CDS NP_747258.1 26991833 1042583 5883408..5883896 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01096; hypothetical protein 5883896 1042583 PP_5157 Pseudomonas putida KT2440 hypothetical protein NP_747258.1 5883408 D 160488 CDS NP_747259.1 26991834 1042592 complement(5884016..5884519) 1 NC_002947.3 similar to GP:9946158; identified by sequence similarity; hypothetical protein 5884519 1042592 PP_5158 Pseudomonas putida KT2440 hypothetical protein NP_747259.1 5884016 R 160488 CDS NP_747260.1 26991835 1042586 complement(5884506..5885129) 1 NC_002947.3 similar to GP:9946156; identified by sequence similarity; 2OG-Fe(II) oxygenase 5885129 1042586 PP_5159 Pseudomonas putida KT2440 2OG-Fe(II) oxygenase NP_747260.1 5884506 R 160488 CDS NP_747261.1 26991836 1042544 5885252..5886004 1 NC_002947.3 hypothetical protein 5886004 1042544 PP_5160 Pseudomonas putida KT2440 hypothetical protein NP_747261.1 5885252 D 160488 CDS NP_747262.1 26991837 1042553 complement(5886005..5887006) 1 NC_002947.3 similar to GP:9946154; identified by sequence similarity; hypothetical protein 5887006 1042553 PP_5161 Pseudomonas putida KT2440 hypothetical protein NP_747262.1 5886005 R 160488 CDS NP_747263.1 26991838 1042554 5887136..5887705 1 NC_002947.3 hypothetical protein 5887705 1042554 PP_5162 Pseudomonas putida KT2440 hypothetical protein NP_747263.1 5887136 D 160488 CDS NP_747264.1 26991839 1042546 complement(5887684..5888250) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01173; acetyltransferase 5888250 1042546 PP_5163 Pseudomonas putida KT2440 acetyltransferase NP_747264.1 5887684 R 160488 CDS NP_747265.1 26991840 1042542 5888337..5890703 1 NC_002947.3 similar to SP:P15558; identified by sequence similarity; penicillin amidase 5890703 1042542 PP_5164 Pseudomonas putida KT2440 penicillin amidase NP_747265.1 5888337 D 160488 CDS NP_747266.1 26991841 1042564 complement(5890823..5891608) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00363; NLPA lipoprotein 5891608 1042564 PP_5165 Pseudomonas putida KT2440 NLPA lipoprotein NP_747266.1 5890823 R 160488 CDS NP_747267.1 26991842 1043885 complement(5891784..5892614) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00158; Fis family transcriptional regulator 5892614 1043885 PP_5166 Pseudomonas putida KT2440 Fis family transcriptional regulator NP_747267.1 5891784 R 160488 CDS NP_747268.1 26991843 1042569 complement(5892679..5893260) 1 NC_002947.3 similar to GP:9946036; identified by sequence similarity; hypothetical protein 5893260 1042569 PP_5167 Pseudomonas putida KT2440 hypothetical protein NP_747268.1 5892679 R 160488 CDS NP_747269.1 26991844 1042563 complement(5893471..5894460) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00972; sulfate ABC transporter ATPase 5894460 cysA 1042563 cysA Pseudomonas putida KT2440 sulfate ABC transporter ATPase NP_747269.1 5893471 R 160488 CDS NP_747270.1 26991845 1042531 complement(5894464..5895336) 1 NC_002947.3 similar to SP:P16702; identified by sequence similarity; sulfate ABC transporter permease 5895336 cysW 1042531 cysW Pseudomonas putida KT2440 sulfate ABC transporter permease NP_747270.1 5894464 R 160488 CDS NP_747271.1 26991846 1042523 complement(5895348..5896166) 1 NC_002947.3 similar to GB:X13585, GB:M22348, GB:M37387, SP:P14927, PID:190802, PID:190804, PID:190816, PID:37580, and PID:553631; identified by sequence similarity; sulfate ABC transporter permease 5896166 cysT 1042523 cysT Pseudomonas putida KT2440 sulfate ABC transporter permease NP_747271.1 5895348 R 160488 CDS NP_747272.1 26991847 1042535 complement(5896351..5897379) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03697; sulfate ABC transporter substrate-binding protein 5897379 cysP 1042535 cysP Pseudomonas putida KT2440 sulfate ABC transporter substrate-binding protein NP_747272.1 5896351 R 160488 CDS NP_747273.1 26991848 1042508 complement(5897409..5897591) 1 NC_002947.3 hypothetical protein 5897591 1042508 PP_5172 Pseudomonas putida KT2440 hypothetical protein NP_747273.1 5897409 R 160488 CDS NP_747274.1 26991849 1045100 complement(5897825..5900878) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03626; acriflavin resistance protein 5900878 1045100 PP_5173 Pseudomonas putida KT2440 acriflavin resistance protein NP_747274.1 5897825 R 160488 CDS NP_747275.1 26991850 1042515 complement(5900875..5901942) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01730; RND efflux transporter 5901942 1042515 PP_5174 Pseudomonas putida KT2440 RND efflux transporter NP_747275.1 5900875 R 160488 CDS NP_747276.1 26991851 1042541 complement(5901939..5903027) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01730; RND family efflux transporter MFP subunit 5903027 1042541 PP_5175 Pseudomonas putida KT2440 RND family efflux transporter MFP subunit NP_747276.1 5901939 R 160488 CDS NP_747277.1 26991852 1041593 5903181..5903735 1 NC_002947.3 hypothetical protein 5903735 1041593 PP_5176 Pseudomonas putida KT2440 hypothetical protein NP_747277.1 5903181 D 160488 CDS NP_747278.1 26991853 1042526 complement(5903842..5904735) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04241; ornithine carbamoyltransferase 5904735 potI 1042526 potI Pseudomonas putida KT2440 ornithine carbamoyltransferase NP_747278.1 5903842 R 160488 CDS NP_747279.1 26991854 1042551 complement(5904732..5905652) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01581; binding-protein-dependent transport system inner membrane protein 5905652 potH 1042551 potH Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_747279.1 5904732 R 160488 CDS NP_747280.1 26991855 1042548 complement(5905649..5906791) 1 NC_002947.3 similar to SP:P31134; identified by sequence similarity; spermidine/putrescine ABC transporter ATPase 5906791 potG 1042548 potG Pseudomonas putida KT2440 spermidine/putrescine ABC transporter ATPase NP_747280.1 5905649 R 160488 CDS NP_747281.1 26991856 1042497 complement(5906863..5907957) 1 NC_002947.3 similar to GP:13194613; identified by sequence similarity; spermidine/putrescine ABC transporter substrate-binding protein 5907957 potF-1 1042497 potF-1 Pseudomonas putida KT2440 spermidine/putrescine ABC transporter substrate-binding protein NP_747281.1 5906863 R 160488 CDS NP_747282.1 26991857 1042495 complement(5908114..5909211) 1 NC_002947.3 similar to GB:M81758, SP:P35499, PID:292487, PID:338213, and PID:908809; identified by sequence similarity; spermidine/putrescine ABC transporter substrate-binding protein 5909211 potF-2 1042495 potF-2 Pseudomonas putida KT2440 spermidine/putrescine ABC transporter substrate-binding protein NP_747282.1 5908114 R 160488 CDS NP_747283.1 26991858 1042516 complement(5909380..5910741) 1 NC_002947.3 similar to SP:P32724, GB:X58406, PID:581361, PID:2094830, and GB:AL123456; identified by sequence similarity; aminotransferase 5910741 1042516 PP_5182 Pseudomonas putida KT2440 aminotransferase NP_747283.1 5909380 R 160488 CDS NP_747284.1 26991859 1042525 complement(5910790..5912148) 1 NC_002947.3 similar to SP:P28787, GB:X68129, and PID:45902; identified by sequence similarity; glutamine synthetase 5912148 1042525 PP_5183 Pseudomonas putida KT2440 glutamine synthetase NP_747284.1 5910790 R 160488 CDS NP_747285.1 26991860 1042504 5912723..5914099 1 NC_002947.3 similar to GP:9948046, SP:P28787, GB:X68129, and PID:45902; identified by sequence similarity; glutamine synthetase 5914099 1042504 PP_5184 Pseudomonas putida KT2440 glutamine synthetase NP_747285.1 5912723 D 160488 CDS NP_747286.1 26991861 1042487 complement(5914252..5915550) 1 NC_002947.3 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 5915550 argA 1042487 argA Pseudomonas putida KT2440 N-acetylglutamate synthase NP_747286.1 5914252 R 160488 CDS NP_747287.1 26991862 1042518 complement(5915675..5916817) 1 NC_002947.3 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 5916817 argE 1042518 argE Pseudomonas putida KT2440 acetylornithine deacetylase NP_747287.1 5915675 R 160488 CDS NP_747288.1 26991863 1042507 5916934..5918301 1 NC_002947.3 similar to GP:9951516; identified by sequence similarity; adenylate cyclase 5918301 1042507 PP_5187 Pseudomonas putida KT2440 adenylate cyclase NP_747288.1 5916934 D 160488 CDS NP_747289.1 26991864 1042536 complement(5918396..5918866) 1 NC_002947.3 similar to GP:9948033, GB:J04173, SP:P18669, and PID:551174; identified by sequence similarity; transcriptional regulator BkdR 5918866 1042536 PP_5188 Pseudomonas putida KT2440 transcriptional regulator BkdR NP_747289.1 5918396 R 160488 CDS NP_747290.1 26991865 1042528 5918993..5919298 1 NC_002947.3 hypothetical protein 5919298 1042528 PP_5189 Pseudomonas putida KT2440 hypothetical protein NP_747290.1 5918993 D 160488 CDS NP_747291.1 26991866 1042440 5919406..5921079 1 NC_002947.3 identified by match to PFAM protein family HMM PF00437; type II secretion system protein E 5921079 1042440 PP_5190 Pseudomonas putida KT2440 type II secretion system protein E NP_747291.1 5919406 D 160488 CDS NP_747292.1 26991867 1042472 5921168..5921482 1 NC_002947.3 similar to GP:9951793; identified by sequence similarity; hypothetical protein 5921482 1042472 PP_5191 Pseudomonas putida KT2440 hypothetical protein NP_747292.1 5921168 D 160488 CDS NP_747293.1 26991868 1042488 complement(5921548..5924421) 1 NC_002947.3 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 5924421 gcvP-2 1042488 gcvP-2 Pseudomonas putida KT2440 glycine dehydrogenase NP_747293.1 5921548 R 160488 CDS NP_747294.1 26991869 1042445 complement(5924618..5925001) 1 NC_002947.3 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 5925001 gcvH 1042445 gcvH Pseudomonas putida KT2440 glycine cleavage system protein H NP_747294.1 5924618 R 160488 CDS NP_747295.1 26991870 1042486 complement(5925053..5926135) 1 NC_002947.3 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 5926135 gcvT 1042486 gcvT Pseudomonas putida KT2440 glycine cleavage system aminomethyltransferase T NP_747295.1 5925053 R 160488 CDS NP_747296.1 26991871 1042430 complement(5926263..5927885) 1 NC_002947.3 similar to GP:9951523; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein 5927885 1042430 PP_5195 Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_747296.1 5926263 R 160488 CDS NP_747297.1 26991872 1042469 complement(5928038..5929039) 1 NC_002947.3 similar to GB:D12621, GB:D12620, GB:S63604, SP:Q08477, PID:303603, and PID:391716; identified by sequence similarity; iron ABC transporter substrate-binding protein 5929039 1042469 PP_5196 Pseudomonas putida KT2440 iron ABC transporter substrate-binding protein NP_747297.1 5928038 R 160488 CDS NP_747298.1 26991873 1042443 complement(5929155..5930378) 1 NC_002947.3 catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 5930378 ubiF 1042443 ubiF Pseudomonas putida KT2440 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase NP_747298.1 5929155 R 160488 CDS NP_747299.1 26991874 1043807 complement(5930382..5930864) 1 NC_002947.3 hypothetical protein 5930864 1043807 PP_5198 Pseudomonas putida KT2440 hypothetical protein NP_747299.1 5930382 R 160488 CDS NP_747300.1 26991875 1042475 complement(5930861..5932060) 1 NC_002947.3 Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase 5932060 ubiH 1042475 ubiH Pseudomonas putida KT2440 2-octaprenyl-6-methoxyphenyl hydroxylase NP_747300.1 5930861 R 160488 CDS NP_747301.1 26991876 1042514 complement(5932057..5933391) 1 NC_002947.3 similar to SP:P15034; identified by sequence similarity; peptidase M24 5933391 pepP 1042514 pepP Pseudomonas putida KT2440 peptidase M24 NP_747301.1 5932057 R 160488 CDS NP_747302.1 26991877 1042432 complement(5933413..5933967) 1 NC_002947.3 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein 5933967 1042432 PP_5201 Pseudomonas putida KT2440 hypothetical protein NP_747302.1 5933413 R 160488 CDS NP_747303.1 26991878 1042437 5934328..5934648 1 NC_002947.3 hypothetical protein 5934648 1042437 PP_5202 Pseudomonas putida KT2440 hypothetical protein NP_747303.1 5934328 D 160488 CDS NP_747304.1 26991879 1041613 5934971..5935579 1 NC_002947.3 identified by match to PFAM protein family HMM PF01812; 5-formyltetrahydrofolate cyclo-ligase 5935579 1041613 PP_5203 Pseudomonas putida KT2440 5-formyltetrahydrofolate cyclo-ligase NP_747304.1 5934971 D 160488 CDS NP_747305.1 26991880 1043355 complement(5935599..5935895) 1 NC_002947.3 hypothetical protein 5935895 1043355 PP_5204 Pseudomonas putida KT2440 hypothetical protein NP_747305.1 5935599 R 160488 CDS NP_747306.1 26991881 1042457 5935930..5936379 1 NC_002947.3 hypothetical protein 5936379 1042457 PP_5205 Pseudomonas putida KT2440 hypothetical protein NP_747306.1 5935930 D 160488 CDS NP_747307.1 26991882 1042418 5936475..5937434 1 NC_002947.3 similar to GP:9951540; identified by sequence similarity; secretion protein HlyD family protein 5937434 1042418 PP_5206 Pseudomonas putida KT2440 secretion protein HlyD family protein NP_747307.1 5936475 D 160488 CDS NP_747308.1 26991883 1042460 5937431..5940151 1 NC_002947.3 identified by match to PFAM protein family HMM PF03772; ABC transporter ATP-binding protein/permease 5940151 1042460 PP_5207 Pseudomonas putida KT2440 ABC transporter ATP-binding protein/permease NP_747308.1 5937431 D 160488 CDS NP_747309.1 26991884 1042412 5940153..5941265 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01291; ABC transporter 5941265 1042412 PP_5208 Pseudomonas putida KT2440 ABC transporter NP_747309.1 5940153 D 160488 CDS NP_747310.1 26991885 1042441 complement(5942044..5942505) 1 NC_002947.3 similar to GP:9951542; identified by sequence similarity; flagellar basal body protein FliL 5942505 1042441 PP_5209 Pseudomonas putida KT2440 flagellar basal body protein FliL NP_747310.1 5942044 R 160488 CDS NP_747311.1 26991886 1042482 5942606..5943583 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01751; zinc-containing alcohol dehydrogenase 5943583 1042482 PP_5210 Pseudomonas putida KT2440 zinc-containing alcohol dehydrogenase NP_747311.1 5942606 D 160488 CDS NP_747312.1 26991887 1042419 complement(5943668..5944225) 1 NC_002947.3 similar to GP:495778, and SP:P39163; identified by sequence similarity; ChaC family protein 5944225 1042419 PP_5211 Pseudomonas putida KT2440 ChaC family protein NP_747312.1 5943668 R 160488 CDS NP_747313.1 26991888 1042424 complement(5944565..5945533) 1 NC_002947.3 catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase 5945533 1042424 PP_5212 Pseudomonas putida KT2440 CDP-6-deoxy-delta-3,4-glucoseen reductase NP_747313.1 5944565 R 160488 CDS NP_747314.1 26991889 1042398 complement(5945533..5947185) 1 NC_002947.3 similar to GP:9951546; identified by sequence similarity; UbiD family decarboxylase 5947185 1042398 PP_5213 Pseudomonas putida KT2440 UbiD family decarboxylase NP_747314.1 5945533 R 160488 CDS NP_747315.1 26991890 1042415 complement(5947205..5948464) 1 NC_002947.3 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 5948464 rho 1042415 rho Pseudomonas putida KT2440 transcription termination factor Rho NP_747315.1 5947205 R 160488 CDS NP_747316.1 26991891 1042429 complement(5948692..5949021) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00411; thioredoxin 5949021 trx-2 1042429 trx-2 Pseudomonas putida KT2440 thioredoxin NP_747316.1 5948692 R 160488 CDS NP_747317.1 26991892 1042408 5949275..5950777 1 NC_002947.3 similar to GP:4760367, and SP:P29014; identified by sequence similarity; Ppx/GppA phosphatase 5950777 ppx 1042408 ppx Pseudomonas putida KT2440 Ppx/GppA phosphatase NP_747317.1 5949275 D 160488 CDS NP_747318.1 26991893 1042417 complement(5950764..5952947) 1 NC_002947.3 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 5952947 ppk 1042417 ppk Pseudomonas putida KT2440 polyphosphate kinase NP_747318.1 5950764 R 160488 CDS NP_747319.1 26991894 1042404 5953221..5953865 1 NC_002947.3 identified by match to PFAM protein family HMM PF04279; DedA family protein 5953865 1042404 PP_5218 Pseudomonas putida KT2440 DedA family protein NP_747319.1 5953221 D 160488 CDS NP_747320.1 26991895 1042434 complement(5953698..5954993) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04116; hypothetical protein 5954993 1042434 PP_5219 Pseudomonas putida KT2440 hypothetical protein NP_747320.1 5953698 R 160488 CDS NP_747321.1 26991896 1041958 5955100..5955765 1 NC_002947.3 similar to SP:P26428; identified by sequence similarity; isoprenoid biosynthesis protein with amidotransferase-like domain 5955765 elbB 1041958 elbB Pseudomonas putida KT2440 isoprenoid biosynthesis protein with amidotransferase-like domain NP_747321.1 5955100 D 160488 CDS NP_747322.1 26991897 1042435 complement(5955969..5956457) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02639; hypothetical protein 5956457 1042435 PP_5221 Pseudomonas putida KT2440 hypothetical protein NP_747322.1 5955969 R 160488 CDS NP_747323.1 26991898 1042392 5956588..5959443 1 NC_002947.3 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 5959443 cyaA 1042392 cyaA Pseudomonas putida KT2440 adenylate cyclase NP_747323.1 5956588 D 160488 CDS NP_747324.1 26991899 1042387 complement(5959513..5959923) 1 NC_002947.3 Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; nucleoside diphosphate kinase regulator 5959923 rnk 1042387 rnk Pseudomonas putida KT2440 nucleoside diphosphate kinase regulator NP_747324.1 5959513 R 160488 CDS NP_747325.1 26991900 1042389 complement(5960070..5960294) 1 NC_002947.3 similar to GP:9949921; identified by sequence similarity; hypothetical protein 5960294 1042389 PP_5224 Pseudomonas putida KT2440 hypothetical protein NP_747325.1 5960070 R 160488 CDS NP_747326.1 26991901 1042385 complement(5960296..5960628) 1 NC_002947.3 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 5960628 cyaY 1042385 cyaY Pseudomonas putida KT2440 frataxin-like protein NP_747326.1 5960296 R 160488 CDS NP_747327.1 26991902 1042367 5960868..5961086 1 NC_002947.3 similar to GB:X57173, PID:40532, PID:2353072, PID:2353076, PID:2353080, PID:2353082, PID:2353084, PID:2353088, PID:2353090, PID:2353092, PID:2353096, PID:2353106, PID:2353116, PID:2353118, PID:2353122, GB:X57173, PID:40532, PID:2353072, PID:2353076, PID:2353080, PID:2353082, PID:2353084, PID:2353088, PID:2353090, PID:2353092, PID:2353096, PID:2353106, PID:2353116, PID:2353118, and PID:2353122; identified by sequence similarity; Lppl family lipoprotein 5961086 1042367 PP_5226 Pseudomonas putida KT2440 Lppl family lipoprotein NP_747327.1 5960868 D 160488 CDS NP_747328.1 26991903 1042399 5961096..5962343 1 NC_002947.3 identified by match to PFAM protein family HMM PF00278; diaminopimelate decarboxylase 5962343 lysA-2 1042399 lysA-2 Pseudomonas putida KT2440 diaminopimelate decarboxylase NP_747328.1 5961096 D 160488 CDS NP_747329.1 26991904 1042378 5962315..5963178 1 NC_002947.3 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 5963178 dapF 1042378 dapF Pseudomonas putida KT2440 diaminopimelate epimerase NP_747329.1 5962315 D 160488 CDS NP_747330.1 26991905 1042390 5963192..5963902 1 NC_002947.3 similar to GB:X70670, GB:U01097, PID:1150846, PID:403299, GB:X70670, GB:U01097, PID:1150846, and PID:403299; identified by sequence similarity; hypothetical protein 5963902 1042390 PP_5229 Pseudomonas putida KT2440 hypothetical protein NP_747330.1 5963192 D 160488 CDS NP_747331.1 26991906 1042368 5963902..5964801 1 NC_002947.3 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 5964801 xerC 1042368 xerC Pseudomonas putida KT2440 site-specific tyrosine recombinase XerC NP_747331.1 5963902 D 160488 CDS NP_747332.1 26991907 1042363 5964798..5965493 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01668; HAD superfamily hydrolase 5965493 1042363 PP_5231 Pseudomonas putida KT2440 HAD superfamily hydrolase NP_747332.1 5964798 D 160488 CDS NP_747333.1 26991908 1043840 complement(5965593..5965922) 1 NC_002947.3 similar to GP:9951599; identified by sequence similarity; hypothetical protein 5965922 1043840 PP_5232 Pseudomonas putida KT2440 hypothetical protein NP_747333.1 5965593 R 160488 CDS NP_747334.1 26991909 1042352 complement(5966352..5967683) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00909; ammonium transporter 5967683 amtB 1042352 amtB Pseudomonas putida KT2440 ammonium transporter NP_747334.1 5966352 R 160488 CDS NP_747335.1 26991910 1042380 complement(5967730..5968068) 1 NC_002947.3 similar to GB:J03077, GB:J03015, GB:M86181, GB:M60255, GB:M60258, GB:X57107, GB:D00422, GB:M81355, GB:X57108, PID:1565257, PID:183231, PID:220064, PID:30235, PID:337756, PID:337760, PID:337762, PID:337765, and PID:337767; identified by sequence similarity; nitrogen regulatory protein P-II 5968068 1042380 PP_5234 Pseudomonas putida KT2440 nitrogen regulatory protein P-II NP_747335.1 5967730 R 160488 CDS NP_747336.1 26991911 1042346 5968587..5968853 1 NC_002947.3 similar to GP:9951603; identified by sequence similarity; hypothetical protein 5968853 1042346 PP_5235 Pseudomonas putida KT2440 hypothetical protein NP_747336.1 5968587 D 160488 CDS NP_747337.1 26991912 1042371 complement(5969161..5971284) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03745; Sel1 domain-containing protein repeat-containing protein 5971284 1042371 PP_5236 Pseudomonas putida KT2440 Sel1 domain-containing protein repeat-containing protein NP_747337.1 5969161 R 160488 CDS NP_747338.1 26991913 1042347 5971493..5971633 1 NC_002947.3 similar to SP:P57015; identified by sequence similarity; hypothetical protein 5971633 1042347 PP_5237 Pseudomonas putida KT2440 hypothetical protein NP_747338.1 5971493 D 160488 CDS NP_747339.1 26991914 1042379 5972205..5972693 1 NC_002947.3 similar to GP:2708665; identified by sequence similarity; hypothetical protein 5972693 1042379 PP_5238 Pseudomonas putida KT2440 hypothetical protein NP_747339.1 5972205 D 160488 CDS NP_747340.1 26991915 1042376 5976191..5977681 1 NC_002947.3 similar to GB:M28880, GB:X16609, GB:X16609, SP:P16157, GB:S82671, PID:1845219, PID:747710, GB:M28880, GB:X16609, GB:X16609, SP:P16157, GB:S82671, PID:1845219, and PID:747710; identified by sequence similarity; magnesium chelatase subunit D/I family protein 5977681 1042376 PP_5239 Pseudomonas putida KT2440 magnesium chelatase subunit D/I family protein NP_747340.1 5976191 D 160488 CDS NP_747341.1 26991916 1042333 complement(5977750..5978118) 1 NC_002947.3 similar to GP:2565293; identified by sequence similarity; response regulator 5978118 1042333 PP_5240 Pseudomonas putida KT2440 response regulator NP_747341.1 5977750 R 160488 CDS NP_747342.1 26991917 1042334 complement(5978115..5979107) 1 NC_002947.3 similar to GP:2598025; identified by sequence similarity; LuxR family transcriptional regulator 5979107 1042334 PP_5241 Pseudomonas putida KT2440 LuxR family transcriptional regulator NP_747342.1 5978115 R 160488 CDS NP_747343.1 26991918 1042342 5979347..5984395 1 NC_002947.3 similar to GP:7271850; identified by sequence similarity; sensor histidine kinase/GAF domain-containing protein 5984395 1042342 PP_5242 Pseudomonas putida KT2440 sensor histidine kinase/GAF domain-containing protein NP_747343.1 5979347 D 160488 CDS NP_747344.1 26991919 1042340 complement(5984484..5985110) 1 NC_002947.3 similar to GP:9947129; identified by sequence similarity; isochorismatase superfamily hydrolase 5985110 1042340 PP_5243 Pseudomonas putida KT2440 isochorismatase superfamily hydrolase NP_747344.1 5984484 R 160488 CDS NP_747345.1 26991920 1042356 complement(5985182..5985586) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 5985586 1042356 PP_5244 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_747345.1 5985182 R 160488 CDS NP_747346.1 26991921 1042324 5985725..5986711 1 NC_002947.3 similar to GP:4584493; identified by sequence similarity; AraC family transcriptional regulator 5986711 1042324 PP_5245 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_747346.1 5985725 D 160488 CDS NP_747347.1 26991922 1042351 5986910..5988697 1 NC_002947.3 similar to GP:9947134, GB:Y00281, SP:P04843, and PID:36053; identified by sequence similarity; potassium efflux system protein 5988697 kefB 1042351 kefB Pseudomonas putida KT2440 potassium efflux system protein NP_747347.1 5986910 D 160488 CDS NP_747348.1 26991923 1042341 5989281..5989679 1 NC_002947.3 hypothetical protein 5989679 1042341 PP_5247 Pseudomonas putida KT2440 hypothetical protein NP_747348.1 5989281 D 160488 CDS NP_747349.1 26991924 1042362 complement(5990028..5990657) 1 NC_002947.3 similar to GB:M17219, SP:P04898, SP:P04899, SP:P08754, and PID:386747; identified by sequence similarity; isochorismatase superfamily hydrolase 5990657 1042362 PP_5248 Pseudomonas putida KT2440 isochorismatase superfamily hydrolase NP_747349.1 5990028 R 160488 CDS NP_747350.1 26991925 1041663 5990886..5991797 1 NC_002947.3 similar to GP:9948462; identified by sequence similarity; LysR family transcriptional regulator 5991797 1041663 PP_5249 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_747350.1 5990886 D 160488 CDS NP_747351.1 26991926 1044766 5992001..5993263 1 NC_002947.3 identified by match to PFAM protein family HMM PF03573; porin 5993263 1044766 PP_5250 Pseudomonas putida KT2440 porin NP_747351.1 5992001 D 160488 CDS NP_747352.1 26991927 1042336 5993265..5994863 1 NC_002947.3 identified by match to PFAM protein family HMM PF04144; transporter 5994863 1042336 PP_5251 Pseudomonas putida KT2440 transporter NP_747352.1 5993265 D 160488 CDS NP_747353.1 26991928 1042338 complement(5995040..5997022) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01416; amidohydrolase 5997022 1042338 PP_5252 Pseudomonas putida KT2440 amidohydrolase NP_747353.1 5995040 R 160488 CDS NP_747354.1 26991929 1042331 complement(5997222..5998040) 1 NC_002947.3 similar to SP:P22862, GB:U09075, PID:483882, PID:483886, PID:483892, PID:483898, PID:483902, PID:506423, PID:567134, PID:567136, PID:567138, PID:567154, PID:567158, PID:567168, PID:567172, PID:587330, PID:587332, PID:587334, PID:619613, PID:619614, PID:642378, PID:642582, PID:722458, PID:791028, PID:939916, and PID:939919; identified by sequence similarity; arylesterase 5998040 1042331 PP_5253 Pseudomonas putida KT2440 arylesterase NP_747354.1 5997222 R 160488 CDS NP_747355.1 26991930 1042328 complement(5998081..5998419) 1 NC_002947.3 similar to GB:Z23013, SP:Q08815, and PID:396549; identified by sequence similarity; hypothetical protein 5998419 1042328 PP_5254 Pseudomonas putida KT2440 hypothetical protein NP_747355.1 5998081 R 160488 CDS NP_747356.1 26991931 1042311 complement(5998507..5999136) 1 NC_002947.3 similar to GB:M17219, SP:P04898, SP:P04899, SP:P08754, and PID:386747; identified by sequence similarity; isochorismatase superfamily hydrolase 5999136 1042311 PP_5255 Pseudomonas putida KT2440 isochorismatase superfamily hydrolase NP_747356.1 5998507 R 160488 CDS NP_747357.1 26991932 1042330 5999457..6000884 1 NC_002947.3 identified by match to PFAM protein family HMM PF00027; cyclic nucleotide-regulated small mechanosensitive ion channel 6000884 1042330 PP_5256 Pseudomonas putida KT2440 cyclic nucleotide-regulated small mechanosensitive ion channel NP_747357.1 5999457 D 160488 CDS NP_747358.1 26991933 1042322 complement(6000993..6002279) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00137; FAD dependent oxidoreductase 6002279 1042322 PP_5257 Pseudomonas putida KT2440 FAD dependent oxidoreductase NP_747358.1 6000993 R 160488 CDS NP_747359.1 26991934 1042337 complement(6002437..6003927) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01722; aldehyde dehydrogenase 6003927 1042337 PP_5258 Pseudomonas putida KT2440 aldehyde dehydrogenase NP_747359.1 6002437 R 160488 CDS NP_747360.1 26991935 1042339 6004063..6004953 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 6004953 1042339 PP_5259 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_747360.1 6004063 D 160488 CDS NP_747361.1 26991936 1042329 6005129..6006523 1 NC_002947.3 similar to SP:Q04314, GB:X60777, PID:46933, SP:Q04314, GB:X60777, and PID:46933; identified by sequence similarity; hypothetical protein 6006523 1042329 PP_5260 Pseudomonas putida KT2440 hypothetical protein NP_747361.1 6005129 D 160488 CDS NP_747362.1 26991937 1042297 complement(6006622..6007548) 1 NC_002947.3 similar to GP:9951608; identified by sequence similarity; LysR family transcriptional regulator 6007548 1042297 PP_5261 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_747362.1 6006622 R 160488 CDS NP_747363.1 26991938 1042301 6007706..6009094 1 NC_002947.3 functions as a Na(+)/drug antiporter; multidrug efflux protein NorA 6009094 1042301 PP_5262 Pseudomonas putida KT2440 multidrug efflux protein NorA NP_747363.1 6007706 D 160488 CDS NP_747364.1 26991939 1042305 complement(6009176..6010843) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00254; diguanylate cyclase 6010843 1042305 PP_5263 Pseudomonas putida KT2440 diguanylate cyclase NP_747364.1 6009176 R 160488 CDS NP_747365.1 26991940 1042307 6011140..6013149 1 NC_002947.3 identified by match to PFAM protein family HMM PF01443; ATP-dependent DNA helicase Rep 6013149 rep 1042307 rep Pseudomonas putida KT2440 ATP-dependent DNA helicase Rep NP_747365.1 6011140 D 160488 CDS NP_747366.1 26991941 1045749 6013214..6013786 1 NC_002947.3 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 6013786 xpt 1045749 xpt Pseudomonas putida KT2440 xanthine phosphoribosyltransferase NP_747366.1 6013214 D 160488 CDS NP_747367.1 26991942 1042287 complement(6013896..6015689) 1 NC_002947.3 similar to SP:P38942; identified by sequence similarity; acetyl-CoA hydrolase/transferase 6015689 1042287 PP_5266 Pseudomonas putida KT2440 acetyl-CoA hydrolase/transferase NP_747367.1 6013896 R 160488 CDS NP_747368.1 26991943 1042300 complement(6016902..6017267) 1 NC_002947.3 similar to GB:M33509, GB:M33512, GB:M33518, GB:Z15025, SP:P48634, PID:179339, and PID:179345; identified by sequence similarity; cytochrome c5 6017267 1042300 PP_5267 Pseudomonas putida KT2440 cytochrome c5 NP_747368.1 6016902 R 160488 CDS NP_747369.1 26991944 1042303 complement(6017461..6018009) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01381; Cro/CI family transcriptional regulator 6018009 1042303 PP_5268 Pseudomonas putida KT2440 Cro/CI family transcriptional regulator NP_747369.1 6017461 R 160488 CDS NP_747370.1 26991945 1041674 complement(6018117..6019190) 1 NC_002947.3 catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA; alanine racemase 6019190 dadX 1041674 dadX Pseudomonas putida KT2440 alanine racemase NP_747370.1 6018117 R 160488 CDS NP_747371.1 26991946 1042325 complement(6019335..6020639) 1 NC_002947.3 catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 6020639 dadA-2 1042325 dadA-2 Pseudomonas putida KT2440 D-amino acid dehydrogenase small subunit NP_747371.1 6019335 R 160488 CDS NP_747372.1 26991947 1042271 6020796..6021284 1 NC_002947.3 similar to GP:9951624; identified by sequence similarity; leucine-responsive regulatory protein 6021284 lrp 1042271 lrp Pseudomonas putida KT2440 leucine-responsive regulatory protein NP_747372.1 6020796 D 160488 CDS NP_747373.1 26991948 1042278 complement(6021287..6021640) 1 NC_002947.3 similar to GP:9949825, and GP:9949825; identified by sequence similarity; hypothetical protein 6021640 1042278 PP_5272 Pseudomonas putida KT2440 hypothetical protein NP_747373.1 6021287 R 160488 CDS NP_747374.1 26991949 1042289 6021784..6023076 1 NC_002947.3 similar to GB:X65867, GB:S60710, SP:P30566, PID:28904, and PID:28905; identified by sequence similarity; oxidoreductase 6023076 1042289 PP_5273 Pseudomonas putida KT2440 oxidoreductase NP_747374.1 6021784 D 160488 CDS NP_747375.1 26991950 1042282 complement(6023220..6023543) 1 NC_002947.3 hypothetical protein 6023543 1042282 PP_5274 Pseudomonas putida KT2440 hypothetical protein NP_747375.1 6023220 R 160488 CDS NP_747376.1 26991951 1042293 6023569..6025059 1 NC_002947.3 identified by match to PFAM protein family HMM PF01276; GntR family transcriptional regulator 6025059 1042293 PP_5275 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_747376.1 6023569 D 160488 CDS NP_747377.1 26991952 1045680 6025120..6026673 1 NC_002947.3 similar to SP:Q04222, and PID:141982; identified by sequence similarity; phospholipase D/transphosphatidylase 6026673 1045680 PP_5276 Pseudomonas putida KT2440 phospholipase D/transphosphatidylase NP_747377.1 6025120 D 160488 CDS NP_747378.1 26991953 1042284 complement(6026708..6027847) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04143; major facilitator family transporter 6027847 1042284 PP_5277 Pseudomonas putida KT2440 major facilitator family transporter NP_747378.1 6026708 R 160488 CDS NP_747379.1 26991954 1042265 complement(6027958..6029451) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01722; aldehyde dehydrogenase 6029451 1042265 PP_5278 Pseudomonas putida KT2440 aldehyde dehydrogenase NP_747379.1 6027958 R 160488 CDS NP_747380.1 26991955 1042288 6029648..6030007 1 NC_002947.3 hypothetical protein 6030007 1042288 PP_5279 Pseudomonas putida KT2440 hypothetical protein NP_747380.1 6029648 D 160488 CDS NP_747381.1 26991956 1042263 complement(6029983..6030372) 1 NC_002947.3 hypothetical protein 6030372 1042263 PP_5280 Pseudomonas putida KT2440 hypothetical protein NP_747381.1 6029983 R 160488 CDS NP_747382.1 26991957 1045684 complement(6030373..6030528) 1 NC_002947.3 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 6030528 rpmG 1045684 rpmG Pseudomonas putida KT2440 50S ribosomal protein L33 NP_747382.1 6030373 R 160488 CDS NP_747383.1 26991958 1042258 complement(6030540..6030776) 1 NC_002947.3 required for 70S ribosome assembly; 50S ribosomal protein L28 6030776 rpmB 1042258 rpmB Pseudomonas putida KT2440 50S ribosomal protein L28 NP_747383.1 6030540 R 160488 CDS NP_747384.1 26991959 1042261 6031138..6032727 1 NC_002947.3 identified by match to PFAM protein family HMM PF00496; peptide ABC transporter substrate-binding protein 6032727 1042261 PP_5283 Pseudomonas putida KT2440 peptide ABC transporter substrate-binding protein NP_747384.1 6031138 D 160488 CDS NP_747385.1 26991960 1045679 complement(6032863..6033543) 1 NC_002947.3 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 6033543 radC 1045679 radC Pseudomonas putida KT2440 DNA repair protein RadC NP_747385.1 6032863 R 160488 CDS NP_747386.1 26991961 1042242 6033669..6034880 1 NC_002947.3 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 6034880 coaBC 1042242 coaBC Pseudomonas putida KT2440 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase NP_747386.1 6033669 D 160488 CDS NP_747387.1 26991962 1042257 6034886..6035341 1 NC_002947.3 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 6035341 dut 1042257 dut Pseudomonas putida KT2440 deoxyuridine 5'-triphosphate nucleotidohydrolase NP_747387.1 6034886 D 160488 CDS NP_747388.1 26991963 1042252 complement(6035323..6035463) 1 NC_002947.3 hypothetical protein 6035463 1042252 PP_5287 Pseudomonas putida KT2440 hypothetical protein NP_747388.1 6035323 R 160488 CDS NP_747389.1 26991964 1042276 6035462..6036853 1 NC_002947.3 similar to GB:D13643, and PID:285997; identified by sequence similarity; phosphomannomutase 6036853 1042276 PP_5288 Pseudomonas putida KT2440 phosphomannomutase NP_747389.1 6035462 D 160488 CDS NP_747390.1 26991965 1042259 6036884..6037789 1 NC_002947.3 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 6037789 argB 1042259 argB Pseudomonas putida KT2440 acetylglutamate kinase NP_747390.1 6036884 D 160488 CDS NP_747391.1 26991966 1042239 complement(6038006..6038971) 1 NC_002947.3 similar to GP:7741879; identified by sequence similarity; ISPpu10, transposase 6038971 1042239 PP_5290 Pseudomonas putida KT2440 ISPpu10, transposase NP_747391.1 6038006 R 160488 CDS NP_747392.1 26991967 1045331 complement(6039265..6039906) 1 NC_002947.3 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 6039906 pyrE 1045331 pyrE Pseudomonas putida KT2440 orotate phosphoribosyltransferase NP_747392.1 6039265 R 160488 CDS NP_747393.1 26991968 1042227 6039987..6040766 1 NC_002947.3 similar to GP:1079662; identified by sequence similarity; exodeoxyribonuclease III 6040766 crc 1042227 crc Pseudomonas putida KT2440 exodeoxyribonuclease III NP_747393.1 6039987 D 160488 CDS NP_747394.1 26991969 1042247 complement(6040800..6041168) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03675; hypothetical protein 6041168 1042247 PP_5293 Pseudomonas putida KT2440 hypothetical protein NP_747394.1 6040800 R 160488 CDS NP_747395.1 26991970 1042255 complement(6041192..6041914) 1 NC_002947.3 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 6041914 rph 1042255 rph Pseudomonas putida KT2440 ribonuclease PH NP_747395.1 6041192 R 160488 CDS NP_747396.2 161378114 1042222 6042142..6043005 1 NC_002947.3 identified by match to PFAM protein family HMM PF03755; hypothetical protein 6043005 1042222 PP_5295 Pseudomonas putida KT2440 hypothetical protein NP_747396.2 6042142 D 160488 CDS NP_747397.1 26991972 1042249 6043019..6043639 1 NC_002947.3 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 6043639 gmk 1042249 gmk Pseudomonas putida KT2440 guanylate kinase NP_747397.1 6043019 D 160488 CDS NP_747398.1 26991973 1042243 complement(6043673..6045280) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03806; amino acid ABC transporter permease 6045280 1042243 PP_5297 Pseudomonas putida KT2440 amino acid ABC transporter permease NP_747398.1 6043673 R 160488 CDS NP_747399.1 26991974 1042245 complement(6045334..6046101) 1 NC_002947.3 similar to SP:P76038; identified by sequence similarity; peptidase C26 6046101 1042245 PP_5298 Pseudomonas putida KT2440 peptidase C26 NP_747399.1 6045334 R 160488 CDS NP_747400.1 26991975 1042223 complement(6046106..6047488) 1 NC_002947.3 similar to GP:9948046, SP:P78061, SP:P78061, SP:P28787, GB:X68129, and PID:45902; identified by sequence similarity; glutamine synthetase 6047488 1042223 PP_5299 Pseudomonas putida KT2440 glutamine synthetase NP_747400.1 6046106 R 160488 CDS NP_747401.1 26991976 1042183 6047517..6048566 1 NC_002947.3 similar to GP:9948295; identified by sequence similarity; LysR family transcriptional regulator 6048566 1042183 PP_5300 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_747401.1 6047517 D 160488 CDS NP_747402.1 26991977 1042214 6048807..6049070 1 NC_002947.3 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 6049070 rpoZ 1042214 rpoZ Pseudomonas putida KT2440 DNA-directed RNA polymerase subunit omega NP_747402.1 6048807 D 160488 CDS NP_747403.1 26991978 1042219 6049130..6051238 1 NC_002947.3 similar to GP:9951657; identified by sequence similarity; (p)ppGpp synthetase I SpoT/RelA 6051238 spoT 1042219 spoT Pseudomonas putida KT2440 (p)ppGpp synthetase I SpoT/RelA NP_747403.1 6049130 D 160488 CDS NP_747404.1 26991979 1042224 6051262..6051642 1 NC_002947.3 similar to SP:P52759; identified by sequence similarity; endoribonuclease 6051642 1042224 PP_5303 Pseudomonas putida KT2440 endoribonuclease NP_747404.1 6051262 D 160488 CDS NP_747405.1 26991980 1042202 6051699..6052430 1 NC_002947.3 lipoprotein 6052430 1042202 PP_5304 Pseudomonas putida KT2440 lipoprotein NP_747405.1 6051699 D 160488 CDS NP_747406.1 26991981 1042210 complement(6052600..6053457) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01746; NAD-dependent epimerase/dehydratase 6053457 1042210 PP_5305 Pseudomonas putida KT2440 NAD-dependent epimerase/dehydratase NP_747406.1 6052600 R 160488 CDS NP_747407.1 26991982 1042208 6053648..6054610 1 NC_002947.3 identified by match to PFAM protein family HMM PF01618; ferric siderophore transport system protein ExbB 6054610 exbB 1042208 exbB Pseudomonas putida KT2440 ferric siderophore transport system protein ExbB NP_747407.1 6053648 D 160488 CDS NP_747408.1 26991983 1042225 6054614..6055042 1 NC_002947.3 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD 6055042 exbD 1042225 exbD Pseudomonas putida KT2440 biopolymer transport protein ExbD NP_747408.1 6054614 D 160488 CDS NP_747409.1 26991984 1042220 6055039..6055770 1 NC_002947.3 similar to GB:M17517, GB:Y00716, GB:Y00716, GB:X07523, GB:Z29665, GB:X07525, SP:P08603, PID:1335095, PID:1354770, PID:180473, PID:31965, PID:758073, GB:M17517, GB:Y00716, GB:Y00716, GB:X07523, GB:Z29665, GB:X07525, SP:P08603, PID:1335095, PID:1354770, PID:180473, PID:31965, and PID:758073; identified by sequence similarity; TonB family protein 6055770 tonB 1042220 tonB Pseudomonas putida KT2440 TonB family protein NP_747409.1 6055039 D 160488 CDS NP_747410.1 26991985 1042238 6055865..6056791 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 6056791 1042238 PP_5309 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_747410.1 6055865 D 160488 CDS NP_747411.1 26991986 1042195 6056795..6058873 1 NC_002947.3 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 6058873 recG 1042195 recG Pseudomonas putida KT2440 ATP-dependent DNA helicase RecG NP_747411.1 6056795 D 160488 CDS NP_747412.1 26991987 1042196 6058952..6060355 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01737; signal transduction protein 6060355 1042196 PP_5311 Pseudomonas putida KT2440 signal transduction protein NP_747412.1 6058952 D 160488 CDS NP_747413.1 26991988 1042193 complement(6060536..6060910) 1 NC_002947.3 hypothetical protein 6060910 1042193 PP_5312 Pseudomonas putida KT2440 hypothetical protein NP_747413.1 6060536 R 160488 CDS NP_747414.1 26991989 1042194 complement(6061059..6061358) 1 NC_002947.3 similar to GB:L05425, and PID:179285; identified by sequence similarity; histone family protein DNA-binding protein 6061358 hupA 1042194 hupA Pseudomonas putida KT2440 histone family protein DNA-binding protein NP_747414.1 6061059 R 160488 CDS NP_747415.1 26991990 1042189 complement(6061546..6062694) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01508; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 6062694 rubB 1042189 rubB Pseudomonas putida KT2440 FAD-dependent pyridine nucleotide-disulfide oxidoreductase NP_747415.1 6061546 R 160488 CDS NP_747416.1 26991991 1042190 complement(6062711..6062878) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00301; rubredoxin-type Fe(Cys)4 protein 6062878 rubA 1042190 rubA Pseudomonas putida KT2440 rubredoxin-type Fe(Cys)4 protein NP_747416.1 6062711 R 160488 CDS NP_747417.1 26991992 1042199 6062911..6063021 1 NC_002947.3 hypothetical protein 6063021 1042199 PP_5316 Pseudomonas putida KT2440 hypothetical protein NP_747417.1 6062911 D 160488 CDS NP_747418.1 26991993 1042185 6063103..6063660 1 NC_002947.3 similar to GP:9885819; identified by sequence similarity; chorismate lyase 6063660 1042185 PP_5317 Pseudomonas putida KT2440 chorismate lyase NP_747418.1 6063103 D 160488 CDS NP_747419.1 26991994 1042212 6063660..6064550 1 NC_002947.3 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 6064550 ubiA 1042212 ubiA Pseudomonas putida KT2440 4-hydroxybenzoate octaprenyltransferase NP_747419.1 6063660 D 160488 CDS NP_747420.1 26991995 1045693 complement(6064584..6065000) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03640; hypothetical protein 6065000 1045693 PP_5319 Pseudomonas putida KT2440 hypothetical protein NP_747420.1 6064584 R 160488 CDS NP_747421.1 26991996 1042206 6065091..6065819 1 NC_002947.3 similar to GB:M23379, SP:P20936, PID:182972, PID:182974, PID:2294274, and PID:2294276; identified by sequence similarity; transcriptional regulator 6065819 phoB 1042206 phoB Pseudomonas putida KT2440 transcriptional regulator NP_747421.1 6065091 D 160488 CDS NP_747422.1 26991997 1042177 6065868..6067175 1 NC_002947.3 similar to GB:J05252, SP:P16519, PID:189131, and PID:189652; identified by sequence similarity; PAS/PAC sensor signal transduction histidine kinase 6067175 phoR 1042177 phoR Pseudomonas putida KT2440 PAS/PAC sensor signal transduction histidine kinase NP_747422.1 6065868 D 160488 CDS NP_747423.1 26991998 1042179 6067349..6068689 1 NC_002947.3 identified by match to PFAM protein family HMM PF03471; hypothetical protein 6068689 1042179 PP_5322 Pseudomonas putida KT2440 hypothetical protein NP_747423.1 6067349 D 160488 CDS NP_747424.1 26991999 1042169 complement(6068702..6069598) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01551; M24/M37 family peptidase 6069598 1042169 PP_5323 Pseudomonas putida KT2440 M24/M37 family peptidase NP_747424.1 6068702 R 160488 CDS NP_747425.1 26992000 1042178 complement(6069745..6070635) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00072; response regulator receiver protein 6070635 1042178 PP_5324 Pseudomonas putida KT2440 response regulator receiver protein NP_747425.1 6069745 R 160488 CDS NP_747426.1 26992001 1042168 complement(6070798..6071568) 1 NC_002947.3 similar to SP:Q9Z410, and SP:Q9Z410; identified by sequence similarity; phosphate transporter PhoU 6071568 phoU 1042168 phoU Pseudomonas putida KT2440 phosphate transporter PhoU NP_747426.1 6070798 R 160488 CDS NP_747427.1 26992002 1042041 complement(6071670..6072515) 1 NC_002947.3 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 6072515 pstB 1042041 pstB Pseudomonas putida KT2440 phosphate transporter ATP-binding protein NP_747427.1 6071670 R 160488 CDS NP_747428.1 26992003 1042175 complement(6072576..6074246) 1 NC_002947.3 similar to GP:4519571, and GP:9951688; identified by sequence similarity; phosphate ABC transporter permease 6074246 pstA 1042175 pstA Pseudomonas putida KT2440 phosphate ABC transporter permease NP_747428.1 6072576 R 160488 CDS NP_747429.1 26992004 1042167 complement(6074264..6076273) 1 NC_002947.3 similar to GP:4519570, and GP:4519570; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein 6076273 pstC 1042167 pstC Pseudomonas putida KT2440 binding-protein-dependent transport system inner membrane protein NP_747429.1 6074264 R 160488 CDS NP_747430.1 26992005 1042187 complement(6076691..6077689) 1 NC_002947.3 similar to GP:4519569; identified by sequence similarity; phosphate ABC transporter substrate-binding protein 6077689 pstS 1042187 pstS Pseudomonas putida KT2440 phosphate ABC transporter substrate-binding protein NP_747430.1 6076691 R 160488 CDS NP_747431.1 26992006 1042150 complement(6077927..6079216) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04304; major facilitator family transporter 6079216 1042150 PP_5330 Pseudomonas putida KT2440 major facilitator family transporter NP_747431.1 6077927 R 160488 CDS NP_747432.1 26992007 1042164 6079578..6079976 1 NC_002947.3 identified by match to PFAM protein family HMM PF01662; thioesterase 6079976 1042164 PP_5331 Pseudomonas putida KT2440 thioesterase NP_747432.1 6079578 D 160488 CDS NP_747433.1 26992008 1042133 6080048..6080944 1 NC_002947.3 similar to GP:9951750, and GP:9951750; identified by sequence similarity; aldose 1-epimerase 6080944 1042133 PP_5332 Pseudomonas putida KT2440 aldose 1-epimerase NP_747433.1 6080048 D 160488 CDS NP_747434.1 26992009 1042154 complement(6081006..6081575) 1 NC_002947.3 hypothetical protein 6081575 1042154 PP_5333 Pseudomonas putida KT2440 hypothetical protein NP_747434.1 6081006 R 160488 CDS NP_747435.1 26992010 1042172 complement(6081588..6081833) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04226; transglycosylase-associated protein 6081833 1042172 PP_5334 Pseudomonas putida KT2440 transglycosylase-associated protein NP_747435.1 6081588 R 160488 CDS NP_747436.1 26992011 1042138 complement(6081942..6083024) 1 NC_002947.3 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 6083024 purK 1042138 purK Pseudomonas putida KT2440 phosphoribosylaminoimidazole carboxylase ATPase subunit NP_747436.1 6081942 R 160488 CDS NP_747437.1 26992012 1042159 complement(6083035..6083526) 1 NC_002947.3 Catalyzes a step in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase catalytic subunit 6083526 purE 1042159 purE Pseudomonas putida KT2440 phosphoribosylaminoimidazole carboxylase catalytic subunit NP_747437.1 6083035 R 160488 CDS NP_747438.1 26992013 1042151 complement(6083793..6084710) 1 NC_002947.3 similar to GP:9951756; identified by sequence similarity; LysR family transcriptional regulator 6084710 1042151 PP_5337 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_747438.1 6083793 R 160488 CDS NP_747439.1 26992014 1041988 6084881..6086317 1 NC_002947.3 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 6086317 aspA 1041988 aspA Pseudomonas putida KT2440 aspartate ammonia-lyase NP_747439.1 6084881 D 160488 CDS NP_747440.1 26992015 1042158 6086469..6087539 1 NC_002947.3 identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 6087539 1042158 PP_5339 Pseudomonas putida KT2440 AraC family transcriptional regulator NP_747440.1 6086469 D 160488 CDS NP_747441.1 26992016 1042594 6087769..6088812 1 NC_002947.3 similar to GB:X08058, GB:X08094, GB:X08095, GB:X08096, GB:X15480, GB:X06547, GB:M24485, GB:D28456, GB:U30897, GB:U62589, SP:P09211, PID:1575434, PID:2076717, PID:2204207, PID:31946, PID:31948, PID:579940, PID:598158, PID:726098, and PID:763405; identified by sequence similarity; histone deacetylase superfamily protein 6088812 1042594 PP_5340 Pseudomonas putida KT2440 histone deacetylase superfamily protein NP_747441.1 6087769 D 160488 CDS NP_747442.1 26992017 1042137 6088812..6089915 1 NC_002947.3 identified by match to PFAM protein family HMM PF01547; polyamine ABC transporter substrate-binding protein 6089915 1042137 PP_5341 Pseudomonas putida KT2440 polyamine ABC transporter substrate-binding protein NP_747442.1 6088812 D 160488 CDS NP_747443.1 26992018 1042140 complement(6089947..6091476) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01265; GntR family transcriptional regulator 6091476 1042140 PP_5342 Pseudomonas putida KT2440 GntR family transcriptional regulator NP_747443.1 6089947 R 160488 CDS NP_747444.1 26992019 1042135 6091566..6092195 1 NC_002947.3 identified by match to PFAM protein family HMM PF04299; FMN-binding negative transcriptional regulator 6092195 1042135 PP_5343 Pseudomonas putida KT2440 FMN-binding negative transcriptional regulator NP_747444.1 6091566 D 160488 CDS NP_747445.1 26992020 1046193 6092207..6092653 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01575; acetyltransferase 6092653 1046193 PP_5344 Pseudomonas putida KT2440 acetyltransferase NP_747445.1 6092207 D 160488 CDS NP_747446.1 26992021 1042121 6092661..6093332 1 NC_002947.3 identified by match to PFAM protein family HMM PF00583; acetyltransferase 6093332 1042121 PP_5345 Pseudomonas putida KT2440 acetyltransferase NP_747446.1 6092661 D 160488 CDS NP_747447.1 26992022 1042148 complement(6093452..6095260) 1 NC_002947.3 catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit B 6095260 oadA 1042148 oadA Pseudomonas putida KT2440 pyruvate carboxylase subunit B NP_747447.1 6093452 R 160488 CDS NP_747448.1 26992023 1042115 complement(6095272..6096687) 1 NC_002947.3 biotin carboxylase; with subunit B, the carboxyltansferase/biotincarboxyl carrier subunit catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit A 6096687 accC-2 1042115 accC-2 Pseudomonas putida KT2440 pyruvate carboxylase subunit A NP_747448.1 6095272 R 160488 CDS NP_747449.1 26992024 1042144 6096877..6097839 1 NC_002947.3 identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 6097839 1042144 PP_5348 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_747449.1 6096877 D 160488 CDS NP_747450.1 26992025 1042118 complement(6098030..6098182) 1 NC_002947.3 hypothetical protein 6098182 1042118 PP_5349 Pseudomonas putida KT2440 hypothetical protein NP_747450.1 6098030 R 160488 CDS NP_747451.1 26992026 1042117 complement(6098212..6099078) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00441; RpiR family transcriptional regulator 6099078 1042117 PP_5350 Pseudomonas putida KT2440 RpiR family transcriptional regulator NP_747451.1 6098212 R 160488 CDS NP_747452.1 26992027 1042114 6099167..6100624 1 NC_002947.3 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 6100624 zwf-3 1042114 zwf-3 Pseudomonas putida KT2440 glucose-6-phosphate 1-dehydrogenase NP_747452.1 6099167 D 160488 CDS NP_747453.1 26992028 1042103 6100839..6103025 1 NC_002947.3 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 6103025 uvrD 1042103 uvrD Pseudomonas putida KT2440 DNA-dependent helicase II NP_747453.1 6100839 D 160488 CDS NP_747454.1 26992029 1042126 6103158..6104012 1 NC_002947.3 similar to GP:9951866; identified by sequence similarity; hypothetical protein 6104012 1042126 PP_5353 Pseudomonas putida KT2440 hypothetical protein NP_747454.1 6103158 D 160488 CDS NP_747455.1 26992030 1041982 6104126..6104533 1 NC_002947.3 similar to GP:9951865; identified by sequence similarity; hypothetical protein 6104533 1041982 PP_5354 Pseudomonas putida KT2440 hypothetical protein NP_747455.1 6104126 D 160488 CDS NP_747456.1 26992031 1042131 complement(6104688..6106448) 1 NC_002947.3 identified by match to PFAM protein family HMM PF03601; sodium/hydrogen exchanger 6106448 1042131 PP_5355 Pseudomonas putida KT2440 sodium/hydrogen exchanger NP_747456.1 6104688 R 160488 CDS NP_747457.1 26992032 1042108 6106788..6107273 1 NC_002947.3 identified by match to PFAM protein family HMM PF01662; thioesterase 6107273 1042108 PP_5356 Pseudomonas putida KT2440 thioesterase NP_747457.1 6106788 D 160488 CDS NP_747458.1 26992033 1042125 complement(6107270..6108142) 1 NC_002947.3 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 6108142 pkxY 1042125 pkxY Pseudomonas putida KT2440 pyridoxamine kinase NP_747458.1 6107270 R 160488 CDS NP_747459.1 26992034 1042132 6108257..6108655 1 NC_002947.3 hypothetical protein 6108655 1042132 PP_5358 Pseudomonas putida KT2440 hypothetical protein NP_747459.1 6108257 D 160488 CDS NP_747460.1 26992035 1042105 complement(6108656..6109627) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02492; CobW/P47K family protein 6109627 1042105 PP_5359 Pseudomonas putida KT2440 CobW/P47K family protein NP_747460.1 6108656 R 160488 CDS NP_747461.1 26992036 1042101 complement(6109668..6110294) 1 NC_002947.3 hypothetical protein 6110294 1042101 PP_5360 Pseudomonas putida KT2440 hypothetical protein NP_747461.1 6109668 R 160488 CDS NP_747462.1 26992037 1042099 complement(6110291..6111499) 1 NC_002947.3 similar to GP:9951874, GB:X59303, GB:X91861, SP:P26640, and PID:31545; identified by sequence similarity; CobW/P47K family protein 6111499 1042099 PP_5361 Pseudomonas putida KT2440 CobW/P47K family protein NP_747462.1 6110291 R 160488 CDS NP_747463.1 26992038 1042093 6111614..6111994 1 NC_002947.3 similar to GP:9951876; identified by sequence similarity; hypothetical protein 6111994 1042093 PP_5362 Pseudomonas putida KT2440 hypothetical protein NP_747463.1 6111614 D 160488 CDS NP_747464.1 26992039 1042109 complement(6112207..6112734) 1 NC_002947.3 similar to GP:48788, and GP:5805407; identified by sequence similarity; hypothetical protein 6112734 1042109 PP_5363 Pseudomonas putida KT2440 hypothetical protein NP_747464.1 6112207 R 160488 CDS NP_747465.1 26992040 1046267 6112861..6114306 1 NC_002947.3 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 6114306 cls 1046267 cls Pseudomonas putida KT2440 cardiolipin synthetase NP_747465.1 6112861 D 160488 CDS NP_747466.1 26992041 1042112 complement(6114390..6115676) 1 NC_002947.3 similar to GB:J05070, SP:P14780, and PID:177205; identified by sequence similarity; cyclopropane-fatty-acyl-phospholipid synthase 6115676 1042112 PP_5365 Pseudomonas putida KT2440 cyclopropane-fatty-acyl-phospholipid synthase NP_747466.1 6114390 R 160488 CDS NP_747467.1 26992042 1042081 6115782..6117182 1 NC_002947.3 Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 6117182 lpd3 1042081 lpd3 Pseudomonas putida KT2440 dihydrolipoamide dehydrogenase NP_747467.1 6115782 D 160488 CDS NP_747468.1 26992043 1042104 complement(6117294..6117764) 1 NC_002947.3 similar to SP:P25060, GB:X56183, and PID:45442; identified by sequence similarity; transketolase domain-containing protein 6117764 1042104 PP_5367 Pseudomonas putida KT2440 transketolase domain-containing protein NP_747468.1 6117294 R 160488 CDS NP_747469.1 26992044 1042083 complement(6117860..6119017) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR00900; major facilitator family transporter 6119017 1042083 PP_5368 Pseudomonas putida KT2440 major facilitator family transporter NP_747469.1 6117860 R 160488 CDS NP_747470.1 26992045 1042087 complement(6119048..6119419) 1 NC_002947.3 similar to SP:P31586, PID:42189, SP:P31586, and PID:42189; identified by sequence similarity; hypothetical protein 6119419 1042087 PP_5369 Pseudomonas putida KT2440 hypothetical protein NP_747470.1 6119048 R 160488 CDS NP_747471.1 26992046 1042084 complement(6119416..6120744) 1 NC_002947.3 identified by match to PFAM protein family HMM PF01593; oxidoreductase-like protein 6120744 1042084 PP_5370 Pseudomonas putida KT2440 oxidoreductase-like protein NP_747471.1 6119416 R 160488 CDS NP_747472.1 26992047 1042088 complement(6120754..6122139) 1 NC_002947.3 similar to GP:13358862; identified by sequence similarity; rubredoxin/rubredoxin reductase 6122139 1042088 PP_5371 Pseudomonas putida KT2440 rubredoxin/rubredoxin reductase NP_747472.1 6120754 R 160488 CDS NP_747473.1 26992048 1042097 complement(6122152..6123597) 1 NC_002947.3 similar to GP:10172815, SP:P27301, GB:U14003, PID:537186, GB:U00096, and PID:1790803; identified by sequence similarity; aldehyde dehydrogenase 6123597 1042097 PP_5372 Pseudomonas putida KT2440 aldehyde dehydrogenase NP_747473.1 6122152 R 160488 CDS NP_747474.1 26992049 1046268 complement(6123608..6124798) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00355; Rieske 2Fe-2S family protein 6124798 1046268 PP_5373 Pseudomonas putida KT2440 Rieske 2Fe-2S family protein NP_747474.1 6123608 R 160488 CDS NP_747475.1 26992050 1042082 6125196..6126899 1 NC_002947.3 similar to GB:U04815, GB:U04818, GB:U04824, GB:U04816, GB:U04817, SP:P21127, PID:189481, PID:507158, PID:507160, PID:507162, PID:507164, PID:507166, PID:507168, PID:507427, and PID:507429; identified by sequence similarity; choline/carnitine/betaine transporter family protein 6126899 1042082 PP_5374 Pseudomonas putida KT2440 choline/carnitine/betaine transporter family protein NP_747475.1 6125196 D 160488 CDS NP_747476.1 26992051 1042743 complement(6126966..6127874) 1 NC_002947.3 similar to GB:L17326, and PID:306325; identified by sequence similarity; LysR family transcriptional regulator 6127874 1042743 PP_5375 Pseudomonas putida KT2440 LysR family transcriptional regulator NP_747476.1 6126966 R 160488 CDS NP_747477.1 26992052 1046208 6128796..6129128 1 NC_002947.3 similar to GP:12484570; identified by sequence similarity; hypothetical protein 6129128 1046208 PP_5376 Pseudomonas putida KT2440 hypothetical protein NP_747477.1 6128796 D 160488 CDS NP_747478.1 26992053 1042086 complement(6129195..6129650) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04214; hypothetical protein 6129650 1042086 PP_5377 Pseudomonas putida KT2440 hypothetical protein NP_747478.1 6129195 R 160488 CDS NP_747479.1 26992054 1042056 complement(6129640..6130422) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00034; cytochrome c family protein 6130422 1042056 PP_5378 Pseudomonas putida KT2440 cytochrome c family protein NP_747479.1 6129640 R 160488 CDS NP_747480.1 26992055 1042067 complement(6130432..6131541) 1 NC_002947.3 copper resistance B 6131541 copB 1042067 copB Pseudomonas putida KT2440 copper resistance B NP_747480.1 6130432 R 160488 CDS NP_747481.1 26992056 1042128 complement(6131833..6133842) 1 NC_002947.3 similar to GB:X12901, GB:A07400, GB:X04657, GB:A14103, SP:P09327, PID:1247443, PID:37843, PID:37845, PID:412172, and PID:579563; identified by sequence similarity; copper resistance protein A 6133842 copA 1042128 copA Pseudomonas putida KT2440 copper resistance protein A NP_747481.1 6131833 R 160488 CDS NP_747482.1 26992057 1042072 6134038..6134292 1 NC_002947.3 hypothetical protein 6134292 1042072 PP_5381 Pseudomonas putida KT2440 hypothetical protein NP_747482.1 6134038 D 160488 CDS NP_747483.1 26992058 1042062 complement(6134424..6134783) 1 NC_002947.3 hypothetical protein 6134783 1042062 PP_5382 Pseudomonas putida KT2440 hypothetical protein NP_747483.1 6134424 R 160488 CDS NP_747484.1 26992059 1042060 6134976..6135653 1 NC_002947.3 similar to GP:6045171, GB:D11428, GB:M94048, GB:L03203, GB:X65968, GB:S61788, SP:Q01453, PID:182985, PID:190131, PID:220010, and PID:31653; identified by sequence similarity; two component heavy metal response transcriptional regulator 6135653 copR 1042060 copR Pseudomonas putida KT2440 two component heavy metal response transcriptional regulator NP_747484.1 6134976 D 160488 CDS NP_747485.1 26992060 1042070 6135650..6137059 1 NC_002947.3 similar to GB:D13627, GB:Z37163, SP:P50990, PID:1136741, PID:286011, PID:992595, GB:D13627, GB:Z37163, SP:P50990, PID:1136741, PID:286011, and PID:992595; identified by sequence similarity; heavy metal sensor signal transduction histidine kinase 6137059 copS 1042070 copS Pseudomonas putida KT2440 heavy metal sensor signal transduction histidine kinase NP_747485.1 6135650 D 160488 CDS NP_747486.1 26992061 1042050 6137536..6138789 1 NC_002947.3 similar to SP:P13509, GB:X52195, GB:M60470, GB:M63259, GB:M63260, GB:M63261, GB:M63262, SP:P20292, PID:182658, and PID:31426; identified by sequence similarity; CzcC family heavy metal RND efflux outer membrane protein 6138789 1042050 PP_5385 Pseudomonas putida KT2440 CzcC family heavy metal RND efflux outer membrane protein NP_747486.1 6137536 D 160488 CDS NP_747487.1 26992062 1043341 6138786..6140258 1 NC_002947.3 similar to GP:8388788, and SP:Q9ZHD0; identified by sequence similarity; CzcB family heavy metal RND efflux membrane fusion protein 6140258 1043341 PP_5386 Pseudomonas putida KT2440 CzcB family heavy metal RND efflux membrane fusion protein NP_747487.1 6138786 D 160488 CDS NP_747488.1 26992063 1042073 6140255..6143413 1 NC_002947.3 similar to GP:8388789; identified by sequence similarity; CzcA family heavy metal RND efflux protein 6143413 1042073 PP_5387 Pseudomonas putida KT2440 CzcA family heavy metal RND efflux protein NP_747488.1 6140255 D 160488 CDS NP_747489.1 26992064 1042071 6143410..6143751 1 NC_002947.3 hypothetical protein 6143751 1042071 PP_5388 Pseudomonas putida KT2440 hypothetical protein NP_747489.1 6143410 D 160488 CDS NP_747490.1 26992065 1042037 complement(6144770..6145429) 1 NC_002947.3 identified by match to PFAM protein family HMM PF04140; hypothetical protein 6145429 1042037 PP_5389 Pseudomonas putida KT2440 hypothetical protein NP_747490.1 6144770 R 160488 CDS NP_747491.1 26992066 1042043 complement(6145426..6145701) 1 NC_002947.3 hypothetical protein 6145701 1042043 PP_5390 Pseudomonas putida KT2440 hypothetical protein NP_747491.1 6145426 R 160488 CDS NP_747492.1 26992067 1042046 complement(6145727..6146308) 1 NC_002947.3 hypothetical protein 6146308 1042046 PP_5391 Pseudomonas putida KT2440 hypothetical protein NP_747492.1 6145727 R 160488 CDS NP_747493.1 26992068 1042052 complement(6146318..6147451) 1 NC_002947.3 similar to GB:X64062, SP:Q00637, PID:1335657, and PID:409457; identified by sequence similarity; hypothetical protein 6147451 1042052 PP_5392 Pseudomonas putida KT2440 hypothetical protein NP_747493.1 6146318 R 160488 CDS NP_747494.1 26992069 1042049 complement(6147606..6147806) 1 NC_002947.3 similar to GP:8388756; identified by sequence similarity; heavy metal transport/detoxification protein 6147806 1042049 PP_5393 Pseudomonas putida KT2440 heavy metal transport/detoxification protein NP_747494.1 6147606 R 160488 CDS NP_747495.1 26992070 1042044 6150980..6151825 1 NC_002947.3 similar to GB:S69137; identified by sequence similarity; hypothetical protein 6151825 1042044 PP_5395 Pseudomonas putida KT2440 hypothetical protein NP_747495.1 6150980 D 160488 CDS NP_747496.1 26992071 1041602 complement(6152929..6154464) 1 NC_002947.3 similar to GP:3414883, and GP:5824139; identified by sequence similarity; ISPpu14, transposase Orf3 6154464 1041602 PP_5396 Pseudomonas putida KT2440 ISPpu14, transposase Orf3 NP_747496.1 6152929 R 160488 CDS NP_747497.1 26992072 1042059 complement(6154528..6154863) 1 NC_002947.3 similar to GP:4928612, and GP:6009406; identified by sequence similarity; ISPpu14, transposase Orf2 6154863 1042059 PP_5397 Pseudomonas putida KT2440 ISPpu14, transposase Orf2 NP_747497.1 6154528 R 160488 CDS NP_747498.1 26992073 1046068 complement(6154860..6155180) 1 NC_002947.3 similar to GP:2773259, and GP:2773259; identified by sequence similarity; ISPpu14, transposase Orf1 6155180 1046068 PP_5398 Pseudomonas putida KT2440 ISPpu14, transposase Orf1 NP_747498.1 6154860 R 160488 CDS NP_747499.1 26992074 1041619 complement(6155386..6156156) 1 NC_002947.3 hypothetical protein 6156156 1041619 PP_5399 Pseudomonas putida KT2440 hypothetical protein NP_747499.1 6155386 R 160488 CDS NP_747500.1 26992075 1042033 6156551..6157618 1 NC_002947.3 hypothetical protein 6157618 1042033 PP_5400 Pseudomonas putida KT2440 hypothetical protein NP_747500.1 6156551 D 160488 CDS NP_747501.1 26992076 1042035 6157627..6158268 1 NC_002947.3 hypothetical protein 6158268 1042035 PP_5401 Pseudomonas putida KT2440 hypothetical protein NP_747501.1 6157627 D 160488 CDS NP_747502.1 26992077 1042029 complement(6159521..6160309) 1 NC_002947.3 identified by match to PFAM protein family HMM PF02146; Sir2 family transcriptional regulator 6160309 1042029 PP_5402 Pseudomonas putida KT2440 Sir2 family transcriptional regulator NP_747502.1 6159521 R 160488 CDS NP_747503.1 26992078 1042023 6161583..6161894 1 NC_002947.3 hypothetical protein 6161894 1042023 PP_5403 Pseudomonas putida KT2440 hypothetical protein NP_747503.1 6161583 D 160488 CDS NP_747504.1 26992079 1042030 complement(6161917..6163263) 1 NC_002947.3 similar to GB:L13740, SP:P22736, PID:1813882, and PID:292834; identified by sequence similarity; transposition protein, TnsC-like protein 6163263 1042030 PP_5404 Pseudomonas putida KT2440 transposition protein, TnsC-like protein NP_747504.1 6161917 R 160488 CDS NP_747505.1 26992080 1046200 complement(6163260..6165272) 1 NC_002947.3 similar to GB:M27382, PID:1552513, PID:292777, PID:37647, PID:493024, PID:563891, and PID:975609; identified by sequence similarity; transposase, TnsB-like protein 6165272 1046200 PP_5405 Pseudomonas putida KT2440 transposase, TnsB-like protein NP_747505.1 6163260 R 160488 CDS NP_747506.1 26992081 1042040 complement(6165269..6166231) 1 NC_002947.3 similar to SP:P13988; identified by sequence similarity; transposase, TnsA-like protein 6166231 1042040 PP_5406 Pseudomonas putida KT2440 transposase, TnsA-like protein NP_747506.1 6165269 R 160488 CDS NP_747507.1 26992082 1042048 6166911..6168509 1 NC_002947.3 similar to GP:2653997, GB:L11672, GB:M61871, SP:P17031, SP:P17040, SP:Q05481, PID:186774, PID:930083, and PID:930092; identified by sequence similarity; transposition protein, TnsD-like protein 6168509 1042048 PP_5407 Pseudomonas putida KT2440 transposition protein, TnsD-like protein NP_747507.1 6166911 D 160488 CDS NP_747508.1 26992083 1042011 complement(6169103..6170284) 1 NC_002947.3 hypothetical protein 6170284 1042011 PP_5408 Pseudomonas putida KT2440 hypothetical protein NP_747508.1 6169103 R 160488 CDS NP_747509.1 26992084 1041649 complement(6170456..6172291) 1 NC_002947.3 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 6172291 glmS 1041649 glmS Pseudomonas putida KT2440 glucosamine--fructose-6-phosphate aminotransferase NP_747509.1 6170456 R 160488 CDS NP_747510.1 26992085 1042019 complement(6172295..6173071) 1 NC_002947.3 identified by match to PFAM protein family HMM PF00455; DeoR family transcriptional regulator 6173071 1042019 PP_5410 Pseudomonas putida KT2440 DeoR family transcriptional regulator NP_747510.1 6172295 R 160488 CDS NP_747511.1 26992086 1045333 complement(6173261..6174628) 1 NC_002947.3 identified by match to TIGR protein family HMM TIGR01173; UDP-N-acetylglucosamine pyrophosphorylase 6174628 glmU 1045333 glmU Pseudomonas putida KT2440 UDP-N-acetylglucosamine pyrophosphorylase NP_747511.1 6173261 R 160488 CDS NP_747512.1 26992087 1042025 complement(6174747..6175166) 1 NC_002947.3 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; ATP synthase F0F1 subunit epsilon 6175166 atpC 1042025 atpC Pseudomonas putida KT2440 ATP synthase F0F1 subunit epsilon NP_747512.1 6174747 R 160488 CDS NP_747513.1 26992088 1042005 complement(6175210..6176586) 1 NC_002947.3 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 6176586 atpD 1042005 atpD Pseudomonas putida KT2440 ATP synthase F0F1 subunit beta NP_747513.1 6175210 R 160488 CDS NP_747514.1 26992089 1042016 complement(6176614..6177474) 1 NC_002947.3 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 6177474 atpG 1042016 atpG Pseudomonas putida KT2440 ATP synthase F0F1 subunit gamma NP_747514.1 6176614 R 160488 CDS NP_747515.1 26992090 1042014 complement(6177523..6179067) 1 NC_002947.3 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 6179067 atpA 1042014 atpA Pseudomonas putida KT2440 ATP synthase F0F1 subunit alpha NP_747515.1 6177523 R 160488 CDS NP_747516.1 26992091 1042018 complement(6179089..6179625) 1 NC_002947.3 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta 6179625 atpH 1042018 atpH Pseudomonas putida KT2440 ATP synthase F0F1 subunit delta NP_747516.1 6179089 R 160488 CDS NP_747517.1 26992092 1046071 complement(6179638..6180108) 1 NC_002947.3 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; ATP synthase F0F1 subunit B 6180108 atpF 1046071 atpF Pseudomonas putida KT2440 ATP synthase F0F1 subunit B NP_747517.1 6179638 R 160488 CDS NP_747518.1 26992093 1041990 complement(6180165..6180422) 1 NC_002947.3 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 6180422 atpE 1041990 atpE Pseudomonas putida KT2440 ATP synthase F0F1 subunit C NP_747518.1 6180165 R 160488 CDS NP_747519.1 26992094 1045265 complement(6180567..6181436) 1 NC_002947.3 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 6181436 atpB 1045265 atpB Pseudomonas putida KT2440 ATP synthase F0F1 subunit A NP_747519.1 6180567 R 160488 CDS NP_747520.1 26992095 1042004 complement(6181453..6181860) 1 NC_002947.3 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I 6181860 atpI 1042004 atpI Pseudomonas putida KT2440 F0F1 ATP synthase subunit I NP_747520.1 6181453 R 160488 CDS