-- dump date 20140620_010132 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_005927917.1 386009640 12522557 complement(54..623) 1 NC_017530.1 hypothetical protein 623 12522557 PPUBIRD1_0001 Pseudomonas putida BIRD-1 hypothetical protein YP_005927917.1 54 R 931281 CDS YP_005927918.1 386009641 12522559 complement(636..881) 1 NC_017530.1 transglycosylase 881 12522559 PPUBIRD1_0002 Pseudomonas putida BIRD-1 transglycosylase YP_005927918.1 636 R 931281 CDS YP_005927919.1 386009642 12522561 complement(990..2072) 1 NC_017530.1 phosphoribosylaminoimidazole carboxylase ATPase subunit; PurK 2072 purK 12522561 purK Pseudomonas putida BIRD-1 PurK YP_005927919.1 990 R 931281 CDS YP_005927920.1 386009643 12522563 complement(2083..2574) 1 NC_017530.1 Phosphoribosylaminoimidazole carboxylase, catalytic subunit 2574 12522563 PPUBIRD1_0004 Pseudomonas putida BIRD-1 Phosphoribosylaminoimidazole carboxylase, catalytic subunit YP_005927920.1 2083 R 931281 CDS YP_005927921.1 386009644 12522606 2844..3470 1 NC_017530.1 hypothetical protein 3470 12522606 PPUBIRD1_0005 Pseudomonas putida BIRD-1 hypothetical protein YP_005927921.1 2844 D 931281 CDS YP_005927922.1 386009645 12522608 complement(3462..4379) 1 NC_017530.1 LysR family transcriptional regulator 4379 12522608 PPUBIRD1_0006 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005927922.1 3462 R 931281 CDS YP_005927923.1 386009646 12522851 4529..5986 1 NC_017530.1 Aspartate ammonia-lyase; protein AspA 5986 aspA 12522851 aspA Pseudomonas putida BIRD-1 protein AspA YP_005927923.1 4529 D 931281 CDS YP_005927924.1 386009647 12522555 6217..7209 1 NC_017530.1 AraC family transcriptional regulator 7209 12522555 PPUBIRD1_0009 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005927924.1 6217 D 931281 CDS YP_005927925.1 386009648 12518242 7506..8549 1 NC_017530.1 Histone deacetylase superfamily protein 8549 12518242 PPUBIRD1_0010 Pseudomonas putida BIRD-1 Histone deacetylase superfamily protein YP_005927925.1 7506 D 931281 CDS YP_005927926.1 386009649 12518243 8549..9652 1 NC_017530.1 ABC transporter, periplasmic polyamine-binding protein, putative 9652 12518243 PPUBIRD1_0011 Pseudomonas putida BIRD-1 ABC transporter, periplasmic polyamine-binding protein, putative YP_005927926.1 8549 D 931281 CDS YP_005927927.1 386009650 12518244 complement(9684..11213) 1 NC_017530.1 GntR family transcriptional regulator 11213 12518244 PPUBIRD1_0012 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005927927.1 9684 R 931281 CDS YP_005927928.1 386009651 12518245 11303..11932 1 NC_017530.1 FMN-binding negative transcriptional regulator 11932 12518245 PPUBIRD1_0013 Pseudomonas putida BIRD-1 FMN-binding negative transcriptional regulator YP_005927928.1 11303 D 931281 CDS YP_005927929.1 386009652 12518246 11944..12390 1 NC_017530.1 Acetyltransferase 12390 12518246 PPUBIRD1_0014 Pseudomonas putida BIRD-1 Acetyltransferase YP_005927929.1 11944 D 931281 CDS YP_005927930.1 386009653 12518247 12398..13069 1 NC_017530.1 Acetyltransferase 13069 12518247 PPUBIRD1_0015 Pseudomonas putida BIRD-1 Acetyltransferase YP_005927930.1 12398 D 931281 CDS YP_005927931.1 386009654 12518248 complement(13190..14998) 1 NC_017530.1 pyruvate carboxylase subunit B; OadA 14998 oadA 12518248 oadA Pseudomonas putida BIRD-1 OadA YP_005927931.1 13190 R 931281 CDS YP_005927932.1 386009655 12518249 complement(15010..16425) 1 NC_017530.1 acetyl-CoA carboxylase; AccC 16425 accC 12518249 accC Pseudomonas putida BIRD-1 AccC YP_005927932.1 15010 R 931281 CDS YP_005927933.1 386009656 12518250 16714..17577 1 NC_017530.1 LysR family transcriptional regulator 17577 12518250 PPUBIRD1_0018 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005927933.1 16714 D 931281 CDS YP_005927934.1 386009657 12518251 complement(17947..18813) 1 NC_017530.1 RpiR family transcriptional regulator 18813 12518251 PPUBIRD1_0019 Pseudomonas putida BIRD-1 RpiR family transcriptional regulator YP_005927934.1 17947 R 931281 CDS YP_005927935.1 386009658 12518252 18917..20359 1 NC_017530.1 glucose-6-phosphate 1-dehydrogenase 20359 12518252 PPUBIRD1_0020 Pseudomonas putida BIRD-1 glucose-6-phosphate 1-dehydrogenase YP_005927935.1 18917 D 931281 CDS YP_005927936.1 386009659 12518253 20574..22760 1 NC_017530.1 DNA helicase II; UvrD 22760 uvrD 12518253 uvrD Pseudomonas putida BIRD-1 UvrD YP_005927936.1 20574 D 931281 CDS YP_005927937.1 386009660 12518254 22892..23746 1 NC_017530.1 Import inner membrane translocase 23746 12518254 PPUBIRD1_0022 Pseudomonas putida BIRD-1 Import inner membrane translocase YP_005927937.1 22892 D 931281 CDS YP_005927938.1 386009661 12518255 23860..24267 1 NC_017530.1 hypothetical protein 24267 12518255 PPUBIRD1_0023 Pseudomonas putida BIRD-1 hypothetical protein YP_005927938.1 23860 D 931281 CDS YP_005927939.1 386009662 12518256 complement(24426..26186) 1 NC_017530.1 Sodium/hydrogen exchanger 26186 12518256 PPUBIRD1_0024 Pseudomonas putida BIRD-1 Sodium/hydrogen exchanger YP_005927939.1 24426 R 931281 CDS YP_005927940.1 386009663 12518257 26526..27011 1 NC_017530.1 Thioesterase superfamily protein 27011 12518257 PPUBIRD1_0025 Pseudomonas putida BIRD-1 Thioesterase superfamily protein YP_005927940.1 26526 D 931281 CDS YP_005927941.1 386009664 12518258 complement(27008..27880) 1 NC_017530.1 Pyridoxamine kinase 27880 12518258 PPUBIRD1_0026 Pseudomonas putida BIRD-1 Pyridoxamine kinase YP_005927941.1 27008 R 931281 CDS YP_005927942.1 386009665 12518259 28001..28393 1 NC_017530.1 hypothetical protein 28393 12518259 PPUBIRD1_0027 Pseudomonas putida BIRD-1 hypothetical protein YP_005927942.1 28001 D 931281 CDS YP_005927943.1 386009666 12518260 complement(28394..29365) 1 NC_017530.1 Cobalamin synthesis protein 29365 12518260 PPUBIRD1_0028 Pseudomonas putida BIRD-1 Cobalamin synthesis protein YP_005927943.1 28394 R 931281 CDS YP_005927944.1 386009667 12518261 complement(29406..30032) 1 NC_017530.1 hypothetical protein 30032 12518261 PPUBIRD1_0029 Pseudomonas putida BIRD-1 hypothetical protein YP_005927944.1 29406 R 931281 CDS YP_005927945.1 386009668 12518262 complement(30029..31276) 1 NC_017530.1 Cobalamin synthesis protein 31276 12518262 PPUBIRD1_0030 Pseudomonas putida BIRD-1 Cobalamin synthesis protein YP_005927945.1 30029 R 931281 CDS YP_005927946.1 386009669 12518263 31345..31731 1 NC_017530.1 hypothetical protein 31731 12518263 PPUBIRD1_0031 Pseudomonas putida BIRD-1 hypothetical protein YP_005927946.1 31345 D 931281 CDS YP_005927947.1 386009670 12518264 31771..31941 1 NC_017530.1 Putative GTP cyclohydrolase 31941 12518264 PPUBIRD1_0032 Pseudomonas putida BIRD-1 Putative GTP cyclohydrolase YP_005927947.1 31771 D 931281 CDS YP_005927948.1 386009671 12518265 complement(32000..32527) 1 NC_017530.1 hypothetical protein 32527 12518265 PPUBIRD1_0033 Pseudomonas putida BIRD-1 hypothetical protein YP_005927948.1 32000 R 931281 CDS YP_005927949.1 386009672 12518266 32660..34099 1 NC_017530.1 Cardiolipin synthase; hypothetical protein 34099 cls 12518266 cls Pseudomonas putida BIRD-1 hypothetical protein YP_005927949.1 32660 D 931281 CDS YP_005927950.1 386009673 12518267 complement(34182..35366) 1 NC_017530.1 cyclopropane-fatty-acyl-phospholipid synthase 35366 12518267 PPUBIRD1_0035 Pseudomonas putida BIRD-1 cyclopropane-fatty-acyl-phospholipid synthase YP_005927950.1 34182 R 931281 CDS YP_005927951.1 386009674 12518268 35574..36974 1 NC_017530.1 Dihydrolipoyl dehydrogenase 3; Lpd3 36974 lpd3 12518268 lpd3 Pseudomonas putida BIRD-1 Lpd3 YP_005927951.1 35574 D 931281 CDS YP_005927952.1 386009675 12518269 complement(37045..38052) 1 NC_017530.1 Transketolase family protein 38052 12518269 PPUBIRD1_0037 Pseudomonas putida BIRD-1 Transketolase family protein YP_005927952.1 37045 R 931281 CDS YP_005927953.1 386009676 12518270 complement(38049..38897) 1 NC_017530.1 Transketolase family protein 38897 12518270 PPUBIRD1_0038 Pseudomonas putida BIRD-1 Transketolase family protein YP_005927953.1 38049 R 931281 CDS YP_005927954.1 386009677 12518271 complement(38916..40217) 1 NC_017530.1 Major facilitator transporter 40217 12518271 PPUBIRD1_0039 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005927954.1 38916 R 931281 CDS YP_005927955.1 386009678 12518272 complement(40285..41034) 1 NC_017530.1 short-chain dehydrogenase 41034 12518272 PPUBIRD1_0040 Pseudomonas putida BIRD-1 short-chain dehydrogenase YP_005927955.1 40285 R 931281 CDS YP_005927956.1 386009679 12518273 41331..42146 1 NC_017530.1 LysR family transcriptional regulator 42146 12518273 PPUBIRD1_0041 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005927956.1 41331 D 931281 CDS YP_005927957.1 386009680 12518274 complement(42305..43342) 1 NC_017530.1 AraC family transcriptional regulator 43342 12518274 PPUBIRD1_0042 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005927957.1 42305 R 931281 CDS YP_005927958.1 386009681 12518275 43440..44396 1 NC_017530.1 X-Pro dipeptidyl-peptidase family protein 44396 12518275 PPUBIRD1_0043 Pseudomonas putida BIRD-1 X-Pro dipeptidyl-peptidase family protein YP_005927958.1 43440 D 931281 CDS YP_005927959.1 386009682 12518276 44401..45264 1 NC_017530.1 short-chain dehydrogenase 45264 12518276 PPUBIRD1_0044 Pseudomonas putida BIRD-1 short-chain dehydrogenase YP_005927959.1 44401 D 931281 CDS YP_005927960.1 386009683 12518277 45293..46159 1 NC_017530.1 dehydrogenase 46159 12518277 PPUBIRD1_0045 Pseudomonas putida BIRD-1 dehydrogenase YP_005927960.1 45293 D 931281 CDS YP_005927961.1 386009684 12518278 46425..47744 1 NC_017530.1 Outer membrane protein precursor 47744 12518278 PPUBIRD1_0046 Pseudomonas putida BIRD-1 Outer membrane protein precursor YP_005927961.1 46425 D 931281 CDS YP_005927962.1 386009685 12518279 complement(48338..49579) 1 NC_017530.1 Outer membrane porin 49579 12518279 PPUBIRD1_0047 Pseudomonas putida BIRD-1 Outer membrane porin YP_005927962.1 48338 R 931281 CDS YP_005927963.1 386009686 12518280 complement(49794..50723) 1 NC_017530.1 dihydrodipicolinate synthetase; protein DapA 50723 dapA 12518280 dapA Pseudomonas putida BIRD-1 protein DapA YP_005927963.1 49794 R 931281 CDS YP_005927964.1 386009687 12518281 complement(50847..52238) 1 NC_017530.1 Major facilitator transporter 52238 12518281 PPUBIRD1_0049 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005927964.1 50847 R 931281 CDS YP_005927965.1 386009688 12518282 complement(53099..53218) 1 NC_017530.1 hypothetical protein 53218 12518282 PPUBIRD1_0050 Pseudomonas putida BIRD-1 hypothetical protein YP_005927965.1 53099 R 931281 CDS YP_005927966.1 386009689 12518283 54295..55695 1 NC_017530.1 Histidine kinase 55695 12518283 PPUBIRD1_0051 Pseudomonas putida BIRD-1 Histidine kinase YP_005927966.1 54295 D 931281 CDS YP_005927967.1 386009690 12518284 55903..56640 1 NC_017530.1 Regulatory protein, IclR 56640 12518284 PPUBIRD1_0052 Pseudomonas putida BIRD-1 Regulatory protein, IclR YP_005927967.1 55903 D 931281 CDS YP_005927968.1 386009691 12518285 57087..57782 1 NC_017530.1 3-oxoacid CoA-transferase subunit A 57782 12518285 PPUBIRD1_0053 Pseudomonas putida BIRD-1 3-oxoacid CoA-transferase subunit A YP_005927968.1 57087 D 931281 CDS YP_005927969.1 386009692 12518286 57791..58432 1 NC_017530.1 3-oxoacid CoA-transferase subunit B 58432 12518286 PPUBIRD1_0054 Pseudomonas putida BIRD-1 3-oxoacid CoA-transferase subunit B YP_005927969.1 57791 D 931281 CDS YP_005927970.1 386009693 12518287 complement(58778..60613) 1 NC_017530.1 Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; protein GlmS 60613 glmS 12518287 glmS Pseudomonas putida BIRD-1 protein GlmS YP_005927970.1 58778 R 931281 CDS YP_005927971.1 386009694 12518288 complement(60617..61393) 1 NC_017530.1 DeoR family transcriptional regulator 61393 12518288 PPUBIRD1_0056 Pseudomonas putida BIRD-1 DeoR family transcriptional regulator YP_005927971.1 60617 R 931281 CDS YP_005927972.1 386009695 12518289 complement(61590..62957) 1 NC_017530.1 UDP-N-acetylglucosamine pyrophosphorylase; bifunctional; protein GlmU 62957 glmU 12518289 glmU Pseudomonas putida BIRD-1 protein GlmU YP_005927972.1 61590 R 931281 CDS YP_005927973.1 386009696 12518290 complement(63076..63489) 1 NC_017530.1 ATP synthase epsilon chain; protein AtpC 63489 atpC 12518290 atpC Pseudomonas putida BIRD-1 protein AtpC YP_005927973.1 63076 R 931281 CDS YP_005927974.1 386009697 12518291 complement(63539..64915) 1 NC_017530.1 ATP synthase subunit beta; AtpB 64915 atpB 12518291 atpB Pseudomonas putida BIRD-1 AtpB YP_005927974.1 63539 R 931281 CDS YP_005927975.1 386009698 12518292 complement(64943..65803) 1 NC_017530.1 ATP synthase gamma chain; protein AtpG 65803 atpG 12518292 atpG Pseudomonas putida BIRD-1 protein AtpG YP_005927975.1 64943 R 931281 CDS YP_005927976.1 386009699 12518293 complement(65852..67396) 1 NC_017530.1 ATP synthase subunit alpha; protein AtpA 67396 atpA 12518293 atpA Pseudomonas putida BIRD-1 protein AtpA YP_005927976.1 65852 R 931281 CDS YP_005927977.1 386009700 12518294 complement(67418..67954) 1 NC_017530.1 ATP synthase subunit delta; AtpH 67954 atpH 12518294 atpH Pseudomonas putida BIRD-1 AtpH YP_005927977.1 67418 R 931281 CDS YP_005927978.1 386009701 12518295 complement(67967..68437) 1 NC_017530.1 ATP synthase subunit b; AtpF 68437 atpF 12518295 atpF Pseudomonas putida BIRD-1 AtpF YP_005927978.1 67967 R 931281 CDS YP_005927979.1 386009702 12518296 complement(68896..69765) 1 NC_017530.1 ATP synthase subunit a; AtpB_2 69765 atpB_2 12518296 atpB_2 Pseudomonas putida BIRD-1 AtpB_2 YP_005927979.1 68896 R 931281 CDS YP_005927980.1 386009703 12518297 complement(69782..70189) 1 NC_017530.1 ATP synthase protein I; AtpI protein 70189 atpI 12518297 atpI Pseudomonas putida BIRD-1 AtpI protein YP_005927980.1 69782 R 931281 CDS YP_005927981.1 386009704 12518298 complement(70339..71211) 1 NC_017530.1 parB-like partition protein; ParB family partitioning protein 71211 parB 12518298 parB Pseudomonas putida BIRD-1 ParB family partitioning protein YP_005927981.1 70339 R 931281 CDS YP_005927982.1 386009705 12518299 complement(71221..71973) 1 NC_017530.1 ParA-like partition protein 71973 12518299 PPUBIRD1_0067 Pseudomonas putida BIRD-1 ParA-like partition protein YP_005927982.1 71221 R 931281 CDS YP_005927983.1 386009706 12518300 complement(72031..72681) 1 NC_017530.1 Ribosomal RNA small subunit methyltransferase G; protein RsmG 72681 rsmG 12518300 rsmG Pseudomonas putida BIRD-1 protein RsmG YP_005927983.1 72031 R 931281 CDS YP_005927984.1 386009707 12518301 complement(72678..74570) 1 NC_017530.1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG; protein MnmG 74570 mnmG 12518301 mnmG Pseudomonas putida BIRD-1 protein MnmG YP_005927984.1 72678 R 931281 CDS YP_005927985.1 386009708 12518302 complement(75203..76573) 1 NC_017530.1 tRNA modification GTPase mnmE; protein MnmE 76573 mnmE 12518302 mnmE Pseudomonas putida BIRD-1 protein MnmE YP_005927985.1 75203 R 931281 CDS YP_005927986.1 386009709 12518303 complement(76662..78344) 1 NC_017530.1 Inner membrane protein oxaA; OxaA 78344 oxaA 12518303 oxaA Pseudomonas putida BIRD-1 OxaA YP_005927986.1 76662 R 931281 CDS YP_005927987.1 386009710 12518304 complement(78585..78989) 1 NC_017530.1 Ribonuclease P protein component; protein RnpA 78989 rnpA 12518304 rnpA Pseudomonas putida BIRD-1 protein RnpA YP_005927987.1 78585 R 931281 CDS YP_005927988.1 386009711 12518305 complement(79003..79137) 1 NC_017530.1 Structural constituent of ribosome 79137 12518305 PPUBIRD1_0073 Pseudomonas putida BIRD-1 Structural constituent of ribosome YP_005927988.1 79003 R 931281 CDS YP_005927989.1 386009712 12518306 79739..81253 1 NC_017530.1 Chromosomal replication initiator protein dnaA; ATPase DnaA 81253 dnaA 12518306 dnaA Pseudomonas putida BIRD-1 ATPase DnaA YP_005927989.1 79739 D 931281 CDS YP_005927990.1 386009713 12518307 81294..82397 1 NC_017530.1 DNA polymerase III subunit beta; DnaN protein 82397 dnaN 12518307 dnaN Pseudomonas putida BIRD-1 DnaN protein YP_005927990.1 81294 D 931281 CDS YP_005927991.1 386009714 12518308 82413..83516 1 NC_017530.1 DNA replication and repair protein recF; protein RecF 83516 recF 12518308 recF Pseudomonas putida BIRD-1 protein RecF YP_005927991.1 82413 D 931281 CDS YP_005927992.1 386009715 12518309 83521..85941 1 NC_017530.1 DNA gyrase subunit B; protein GyrB 85941 gyrB 12518309 gyrB Pseudomonas putida BIRD-1 protein GyrB YP_005927992.1 83521 D 931281 CDS YP_005927993.1 386009716 12518310 complement(86006..86206) 1 NC_017530.1 hypothetical protein 86206 12518310 PPUBIRD1_0078 Pseudomonas putida BIRD-1 hypothetical protein YP_005927993.1 86006 R 931281 CDS YP_005927994.1 386009717 12518311 complement(86544..87836) 1 NC_017530.1 Sigma-54 dependent transcriptional regulator 87836 12518311 PPUBIRD1_0080 Pseudomonas putida BIRD-1 Sigma-54 dependent transcriptional regulator YP_005927994.1 86544 R 931281 CDS YP_005927995.1 386009718 12518312 88047..88943 1 NC_017530.1 Beta-lactamase domain protein 88943 12518312 PPUBIRD1_0081 Pseudomonas putida BIRD-1 Beta-lactamase domain protein YP_005927995.1 88047 D 931281 CDS YP_005927996.1 386009719 12518313 88984..90252 1 NC_017530.1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 90252 12518313 PPUBIRD1_0082 Pseudomonas putida BIRD-1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_005927996.1 88984 D 931281 CDS YP_005927997.1 386009720 12518314 90249..91067 1 NC_017530.1 hypothetical protein 91067 12518314 PPUBIRD1_0083 Pseudomonas putida BIRD-1 hypothetical protein YP_005927997.1 90249 D 931281 CDS YP_005927998.1 386009721 12518315 complement(91056..91943) 1 NC_017530.1 LysR family transcriptional regulator 91943 12518315 PPUBIRD1_0084 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005927998.1 91056 R 931281 CDS YP_005927999.1 386009722 12518316 92178..93824 1 NC_017530.1 glucose-methanol-choline oxidoreductase 93824 12518316 PPUBIRD1_0085 Pseudomonas putida BIRD-1 glucose-methanol-choline oxidoreductase YP_005927999.1 92178 D 931281 CDS YP_005928000.1 386009723 12518317 93922..95541 1 NC_017530.1 general substrate transporter 95541 12518317 PPUBIRD1_0086 Pseudomonas putida BIRD-1 general substrate transporter YP_005928000.1 93922 D 931281 CDS YP_005928001.1 386009724 12518318 complement(95716..96486) 1 NC_017530.1 phospholipid/glycerol acyltransferase 96486 12518318 PPUBIRD1_0087 Pseudomonas putida BIRD-1 phospholipid/glycerol acyltransferase YP_005928001.1 95716 R 931281 CDS YP_005928002.1 386009725 12518319 complement(96548..97075) 1 NC_017530.1 D,D-heptose 1,7-bisphosphate phosphatase 97075 12518319 PPUBIRD1_0088 Pseudomonas putida BIRD-1 D,D-heptose 1,7-bisphosphate phosphatase YP_005928002.1 96548 R 931281 CDS YP_005928003.1 386009726 12518320 complement(97079..99133) 1 NC_017530.1 Glycyl-tRNA synthetase beta subunit; protein GlyS 99133 glyS 12518320 glyS Pseudomonas putida BIRD-1 protein GlyS YP_005928003.1 97079 R 931281 CDS YP_005928004.1 386009727 12518321 complement(99130..100077) 1 NC_017530.1 Glycyl-tRNA synthetase alpha subunit; GlyQ 100077 glyQ 12518321 glyQ Pseudomonas putida BIRD-1 GlyQ YP_005928004.1 99130 R 931281 CDS YP_005928005.1 386009728 12518322 100227..100712 1 NC_017530.1 DNA-3-methyladenine glycosylase I; hypothetical protein 100712 tag 12518322 tag Pseudomonas putida BIRD-1 hypothetical protein YP_005928005.1 100227 D 931281 CDS YP_005928006.1 386009729 12518323 100754..101641 1 NC_017530.1 Lipid A biosynthesis lauroyl acyltransferase 101641 12518323 PPUBIRD1_0092 Pseudomonas putida BIRD-1 Lipid A biosynthesis lauroyl acyltransferase YP_005928006.1 100754 D 931281 CDS YP_005928007.1 386009730 12518324 complement(101740..102054) 1 NC_017530.1 Tetratricopeptide domain-containing protein 102054 12518324 PPUBIRD1_0093 Pseudomonas putida BIRD-1 Tetratricopeptide domain-containing protein YP_005928007.1 101740 R 931281 CDS YP_005928008.1 386009731 12518325 complement(102066..103439) 1 NC_017530.1 potassium transporter peripheral membrane component; TrkA family protein 103439 trkA 12518325 trkA Pseudomonas putida BIRD-1 TrkA family protein YP_005928008.1 102066 R 931281 CDS YP_005928009.1 386009732 12518326 complement(103463..104773) 1 NC_017530.1 Ribosomal RNA small subunit methyltransferase B; protein RsmB 104773 rsmB 12518326 rsmB Pseudomonas putida BIRD-1 protein RsmB YP_005928009.1 103463 R 931281 CDS YP_005928010.1 386009733 12518327 complement(104770..105702) 1 NC_017530.1 Methionyl-tRNA formyltransferase; hypothetical protein 105702 fmt 12518327 fmt Pseudomonas putida BIRD-1 hypothetical protein YP_005928010.1 104770 R 931281 CDS YP_005928011.1 386009734 12518328 complement(105763..106269) 1 NC_017530.1 Peptide deformylase 1; hypothetical protein 106269 def 12518328 def Pseudomonas putida BIRD-1 hypothetical protein YP_005928011.1 105763 R 931281 CDS YP_005928012.1 386009735 12518329 106476..107573 1 NC_017530.1 DNA protecting protein DprA; DprA-like protein 107573 dprA 12518329 dprA Pseudomonas putida BIRD-1 DprA-like protein YP_005928012.1 106476 D 931281 CDS YP_005928013.1 386009736 12518330 107616..108173 1 NC_017530.1 Putative ribosome maturation factor; RimN 108173 rimN 12518330 rimN Pseudomonas putida BIRD-1 RimN YP_005928013.1 107616 D 931281 CDS YP_005928014.1 386009737 12518331 108621..108938 1 NC_017530.1 hypothetical protein 108938 12518331 PPUBIRD1_0100 Pseudomonas putida BIRD-1 hypothetical protein YP_005928014.1 108621 D 931281 CDS YP_005928015.1 386009738 12518332 complement(109066..110043) 1 NC_017530.1 Alcohol dehydrogenase 110043 12518332 PPUBIRD1_0101 Pseudomonas putida BIRD-1 Alcohol dehydrogenase YP_005928015.1 109066 R 931281 CDS YP_005928016.1 386009739 12518333 110178..111089 1 NC_017530.1 Coproporphyrinogen-III oxidase, aerobic; HemF 111089 hemF 12518333 hemF Pseudomonas putida BIRD-1 HemF YP_005928016.1 110178 D 931281 CDS YP_005928017.1 386009740 12518334 111114..111938 1 NC_017530.1 shikimate 5-dehydrogenase; AroE 111938 aroE 12518334 aroE Pseudomonas putida BIRD-1 AroE YP_005928017.1 111114 D 931281 CDS YP_005928018.1 386009741 12518335 complement(111977..113542) 1 NC_017530.1 sulfate transporter 113542 12518335 PPUBIRD1_0104 Pseudomonas putida BIRD-1 sulfate transporter YP_005928018.1 111977 R 931281 CDS YP_005928019.1 386009742 12518336 complement(113687..114610) 1 NC_017530.1 Glycine betaine-binding protein 114610 12518336 PPUBIRD1_0105 Pseudomonas putida BIRD-1 Glycine betaine-binding protein YP_005928019.1 113687 R 931281 CDS YP_005928020.1 386009743 12518337 complement(114625..116142) 1 NC_017530.1 sulfatase 116142 12518337 PPUBIRD1_0106 Pseudomonas putida BIRD-1 sulfatase YP_005928020.1 114625 R 931281 CDS YP_005928021.1 386009744 12518338 116251..117150 1 NC_017530.1 LysR family transcriptional regulator 117150 12518338 PPUBIRD1_0107 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005928021.1 116251 D 931281 CDS YP_005928022.1 386009745 12518339 complement(117262..117879) 1 NC_017530.1 hypothetical protein 117879 12518339 PPUBIRD1_0108 Pseudomonas putida BIRD-1 hypothetical protein YP_005928022.1 117262 R 931281 CDS YP_005928023.1 386009746 12518340 117932..118264 1 NC_017530.1 DOPA 4,5-dioxygenase 118264 12518340 PPUBIRD1_0109 Pseudomonas putida BIRD-1 DOPA 4,5-dioxygenase YP_005928023.1 117932 D 931281 CDS YP_005928024.1 386009747 12518341 complement(118382..119191) 1 NC_017530.1 Tryptophan synthase alpha chain; TrpA 119191 trpA 12518341 trpA Pseudomonas putida BIRD-1 TrpA YP_005928024.1 118382 R 931281 CDS YP_005928025.1 386009748 12518342 complement(119188..120405) 1 NC_017530.1 Tryptophan synthase beta chain; protein TrpB 120405 trpB 12518342 trpB Pseudomonas putida BIRD-1 protein TrpB YP_005928025.1 119188 R 931281 CDS YP_005928026.1 386009749 12518343 120516..121412 1 NC_017530.1 LysR family transcriptional regulator 121412 12518343 PPUBIRD1_0112 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005928026.1 120516 D 931281 CDS YP_005928027.1 386009750 12518344 complement(121409..121732) 1 NC_017530.1 hypothetical protein 121732 12518344 PPUBIRD1_0113 Pseudomonas putida BIRD-1 hypothetical protein YP_005928027.1 121409 R 931281 CDS YP_005928028.1 386009751 12518345 121883..122098 1 NC_017530.1 hypothetical protein 122098 12518345 PPUBIRD1_0114 Pseudomonas putida BIRD-1 hypothetical protein YP_005928028.1 121883 D 931281 CDS YP_005928029.1 386009752 12518346 122199..122420 1 NC_017530.1 hypothetical protein 122420 12518346 PPUBIRD1_0115 Pseudomonas putida BIRD-1 hypothetical protein YP_005928029.1 122199 D 931281 CDS YP_005928030.1 386009753 12518347 complement(122493..123497) 1 NC_017530.1 Luciferase family protein 123497 12518347 PPUBIRD1_0116 Pseudomonas putida BIRD-1 Luciferase family protein YP_005928030.1 122493 R 931281 CDS YP_005928031.1 386009754 12518348 123650..124075 1 NC_017530.1 OsmC family protein 124075 osmC 12518348 osmC Pseudomonas putida BIRD-1 OsmC family protein YP_005928031.1 123650 D 931281 CDS YP_005928032.1 386009755 12518349 124151..124384 1 NC_017530.1 hypothetical protein 124384 12518349 PPUBIRD1_0118 Pseudomonas putida BIRD-1 hypothetical protein YP_005928032.1 124151 D 931281 CDS YP_005928033.1 386009756 12518350 complement(124420..124833) 1 NC_017530.1 Putative lipoprotein 124833 12518350 PPUBIRD1_0119 Pseudomonas putida BIRD-1 Putative lipoprotein YP_005928033.1 124420 R 931281 CDS YP_005928034.1 386009757 12518351 complement(124889..125302) 1 NC_017530.1 hypothetical protein 125302 12518351 PPUBIRD1_0120 Pseudomonas putida BIRD-1 hypothetical protein YP_005928034.1 124889 R 931281 CDS YP_005928035.1 386009758 12518352 125388..126461 1 NC_017530.1 hypothetical protein 126461 12518352 PPUBIRD1_0121 Pseudomonas putida BIRD-1 hypothetical protein YP_005928035.1 125388 D 931281 CDS YP_005928036.1 386009759 12518353 complement(126571..127221) 1 NC_017530.1 HAD family hydrolase 127221 12518353 PPUBIRD1_0122 Pseudomonas putida BIRD-1 HAD family hydrolase YP_005928036.1 126571 R 931281 CDS YP_005928037.1 386009760 12518354 complement(127343..127891) 1 NC_017530.1 Anhydrase family 3 protein 127891 12518354 PPUBIRD1_0123 Pseudomonas putida BIRD-1 Anhydrase family 3 protein YP_005928037.1 127343 R 931281 CDS YP_005928038.1 386009761 12518355 127994..130045 1 NC_017530.1 Oligopeptidase A; OpdA 130045 opdA 12518355 opdA Pseudomonas putida BIRD-1 OpdA YP_005928038.1 127994 D 931281 CDS YP_005928039.1 386009762 12518356 130042..130323 1 NC_017530.1 hypothetical protein 130323 12518356 PPUBIRD1_0125 Pseudomonas putida BIRD-1 hypothetical protein YP_005928039.1 130042 D 931281 CDS YP_005928040.1 386009763 12518357 130447..132441 1 NC_017530.1 Peptidase M3A and M3B, thimet/oligopeptidase F 132441 12518357 PPUBIRD1_0126 Pseudomonas putida BIRD-1 Peptidase M3A and M3B, thimet/oligopeptidase F YP_005928040.1 130447 D 931281 CDS YP_005928041.1 386009764 12518358 132512..133570 1 NC_017530.1 radical SAM protein 133570 12518358 PPUBIRD1_0127 Pseudomonas putida BIRD-1 radical SAM protein YP_005928041.1 132512 D 931281 CDS YP_005928042.1 386009765 12518359 133874..134593 1 NC_017530.1 carbonate dehydratase; CynT 134593 cynT 12518359 cynT Pseudomonas putida BIRD-1 CynT YP_005928042.1 133874 D 931281 CDS YP_005928043.1 386009766 12518360 134786..136318 1 NC_017530.1 sulfate transporter 136318 12518360 PPUBIRD1_0129 Pseudomonas putida BIRD-1 sulfate transporter YP_005928043.1 134786 D 931281 CDS YP_005928044.1 386009767 12518361 complement(136466..137107) 1 NC_017530.1 hypothetical protein 137107 12518361 PPUBIRD1_0130 Pseudomonas putida BIRD-1 hypothetical protein YP_005928044.1 136466 R 931281 CDS YP_005928045.1 386009768 12518362 137477..138604 1 NC_017530.1 cytochrome c oxidase, subunit II; Cox2 138604 cox2 12518362 cox2 Pseudomonas putida BIRD-1 Cox2 YP_005928045.1 137477 D 931281 CDS YP_005928046.1 386009769 12518363 138648..140237 1 NC_017530.1 cytochrome c oxidase, subunit I; Cox1 140237 cox1 12518363 cox1 Pseudomonas putida BIRD-1 Cox1 YP_005928046.1 138648 D 931281 CDS YP_005928047.1 386009770 12518364 140247..140813 1 NC_017530.1 cytochrome C oxidase assembly protein; Cox11 140813 cox11 12518364 cox11 Pseudomonas putida BIRD-1 Cox11 YP_005928047.1 140247 D 931281 CDS YP_005928048.1 386009771 12518365 140830..141717 1 NC_017530.1 cytochrome c oxidase, subunit III; Cox3 141717 cox3 12518365 cox3 Pseudomonas putida BIRD-1 Cox3 YP_005928048.1 140830 D 931281 CDS YP_005928049.1 386009772 12518366 142005..142742 1 NC_017530.1 hypothetical protein 142742 12518366 PPUBIRD1_0135 Pseudomonas putida BIRD-1 hypothetical protein YP_005928049.1 142005 D 931281 CDS YP_005928050.1 386009773 12518367 142711..143292 1 NC_017530.1 hypothetical protein 143292 12518367 PPUBIRD1_0136 Pseudomonas putida BIRD-1 hypothetical protein YP_005928050.1 142711 D 931281 CDS YP_005928051.1 386009774 12518368 143302..144381 1 NC_017530.1 Cytochrome oxidase assembly 144381 12518368 PPUBIRD1_0137 Pseudomonas putida BIRD-1 Cytochrome oxidase assembly YP_005928051.1 143302 D 931281 CDS YP_005928052.1 386009775 12518369 144366..145259 1 NC_017530.1 Protoheme IX farnesyltransferase 1 145259 12518369 PPUBIRD1_0138 Pseudomonas putida BIRD-1 Protoheme IX farnesyltransferase 1 YP_005928052.1 144366 D 931281 CDS YP_005928053.1 386009776 12518370 145256..145888 1 NC_017530.1 Electron transport protein SCO1/SenC 145888 12518370 PPUBIRD1_0139 Pseudomonas putida BIRD-1 Electron transport protein SCO1/SenC YP_005928053.1 145256 D 931281 CDS YP_005928054.1 386009777 12518371 complement(145982..146752) 1 NC_017530.1 NLPA lipoprotein 146752 12518371 PPUBIRD1_0140 Pseudomonas putida BIRD-1 NLPA lipoprotein YP_005928054.1 145982 R 931281 CDS YP_005928055.1 386009778 12518372 complement(146817..147488) 1 NC_017530.1 ABC transporter permease 147488 12518372 PPUBIRD1_0141 Pseudomonas putida BIRD-1 ABC transporter permease YP_005928055.1 146817 R 931281 CDS YP_005928056.1 386009779 12518373 complement(147488..148495) 1 NC_017530.1 Methionine import ATP-binding protein metN1; MetN1 148495 metN1 12518373 metN1 Pseudomonas putida BIRD-1 MetN1 YP_005928056.1 147488 R 931281 CDS YP_005928057.1 386009780 12518374 148723..150858 1 NC_017530.1 Catalase HPII; KatE 150858 katE 12518374 katE Pseudomonas putida BIRD-1 KatE YP_005928057.1 148723 D 931281 CDS YP_005928058.1 386009781 12518375 complement(150919..151626) 1 NC_017530.1 hypothetical protein 151626 12518375 PPUBIRD1_0144 Pseudomonas putida BIRD-1 hypothetical protein YP_005928058.1 150919 R 931281 CDS YP_005928059.1 386009782 12518376 complement(151753..152484) 1 NC_017530.1 ZnuB 152484 znuB 12518376 znuB Pseudomonas putida BIRD-1 ZnuB YP_005928059.1 151753 R 931281 CDS YP_005928060.1 386009783 12518377 complement(152529..153302) 1 NC_017530.1 Zinc import ATP-binding protein znuC; ZnuC 153302 znuC 12518377 znuC Pseudomonas putida BIRD-1 ZnuC YP_005928060.1 152529 R 931281 CDS YP_005928061.1 386009784 12518378 complement(153299..153784) 1 NC_017530.1 Ferric uptake regulator family protein 153784 12518378 PPUBIRD1_0147 Pseudomonas putida BIRD-1 Ferric uptake regulator family protein YP_005928061.1 153299 R 931281 CDS YP_005928062.1 386009785 12518379 153914..154759 1 NC_017530.1 Periplasmic solute binding protein 154759 12518379 PPUBIRD1_0148 Pseudomonas putida BIRD-1 Periplasmic solute binding protein YP_005928062.1 153914 D 931281 CDS YP_005928063.1 386009786 12518380 complement(154869..155819) 1 NC_017530.1 homoserine kinase; ThrB 155819 thrB 12518380 thrB Pseudomonas putida BIRD-1 ThrB YP_005928063.1 154869 R 931281 CDS YP_005928064.1 386009787 12518381 complement(155889..156176) 1 NC_017530.1 hypothetical protein 156176 12518381 PPUBIRD1_0150 Pseudomonas putida BIRD-1 hypothetical protein YP_005928064.1 155889 R 931281 CDS YP_005928065.1 386009788 12518382 156252..158999 1 NC_017530.1 DNA polymerase I; protein PolA 158999 polA 12518382 polA Pseudomonas putida BIRD-1 protein PolA YP_005928065.1 156252 D 931281 CDS YP_005928066.1 386009789 12518383 complement(159545..160177) 1 NC_017530.1 Probable GTP-binding protein; protein EngB 160177 engB 12518383 engB Pseudomonas putida BIRD-1 protein EngB YP_005928066.1 159545 R 931281 CDS YP_005928067.1 386009790 12518384 160379..160681 1 NC_017530.1 Cytochrome c-type protein 160681 12518384 PPUBIRD1_0153 Pseudomonas putida BIRD-1 Cytochrome c-type protein YP_005928067.1 160379 D 931281 CDS YP_005928068.1 386009791 12518385 160728..161330 1 NC_017530.1 cytochrome c4 161330 12518385 PPUBIRD1_0154 Pseudomonas putida BIRD-1 cytochrome c4 YP_005928068.1 160728 D 931281 CDS YP_005928069.1 386009792 12518386 161482..162114 1 NC_017530.1 DSBA oxidoreductase; DsbA family thiol:disulfide interchange protein 162114 dsbA 12518386 dsbA Pseudomonas putida BIRD-1 DsbA family thiol:disulfide interchange protein YP_005928069.1 161482 D 931281 CDS YP_005928070.1 386009793 12518387 162127..162981 1 NC_017530.1 endonuclease/exonuclease/phosphatase 162981 12518387 PPUBIRD1_0156 Pseudomonas putida BIRD-1 endonuclease/exonuclease/phosphatase YP_005928070.1 162127 D 931281 CDS YP_005928071.1 386009794 12518388 163009..164946 1 NC_017530.1 Diguanylate cyclase 164946 12518388 PPUBIRD1_0157 Pseudomonas putida BIRD-1 Diguanylate cyclase YP_005928071.1 163009 D 931281 CDS YP_005928072.1 386009795 12518389 165020..165808 1 NC_017530.1 N-acetylmuramoyl-L-alanine amidase; AmiD 165808 amiD 12518389 amiD Pseudomonas putida BIRD-1 AmiD YP_005928072.1 165020 D 931281 CDS YP_005928073.1 386009796 12518390 166012..167610 1 NC_017530.1 EAL domain containing protein 167610 12518390 PPUBIRD1_0159 Pseudomonas putida BIRD-1 EAL domain containing protein YP_005928073.1 166012 D 931281 CDS YP_005928074.1 386009797 12518391 complement(167625..169391) 1 NC_017530.1 multi-sensor signal transduction histidine kinase; KinB 169391 kinB 12518391 kinB Pseudomonas putida BIRD-1 KinB YP_005928074.1 167625 R 931281 CDS YP_005928075.1 386009798 12518392 complement(169403..170749) 1 NC_017530.1 Alginate biosynthesis transcriptional regulatory protein algB; AlgB 170749 algB 12518392 algB Pseudomonas putida BIRD-1 AlgB YP_005928075.1 169403 R 931281 CDS YP_005928076.1 386009799 12518393 170960..171781 1 NC_017530.1 Transport-associated protein 171781 12518393 PPUBIRD1_0162 Pseudomonas putida BIRD-1 Transport-associated protein YP_005928076.1 170960 D 931281 CDS YP_005928077.1 386009800 12518394 171956..172246 1 NC_017530.1 hypothetical protein 172246 12518394 PPUBIRD1_0163 Pseudomonas putida BIRD-1 hypothetical protein YP_005928077.1 171956 D 931281 CDS YP_005928078.1 386009801 12518395 172478..172924 1 NC_017530.1 lysozyme inhibitor 172924 12518395 PPUBIRD1_0165 Pseudomonas putida BIRD-1 lysozyme inhibitor YP_005928078.1 172478 D 931281 CDS YP_005928079.1 386009802 12518396 173643..174998 1 NC_017530.1 glutamate/aspartate:proton symporter; GltP 174998 gltP 12518396 gltP Pseudomonas putida BIRD-1 GltP YP_005928079.1 173643 D 931281 CDS YP_005928080.1 386009803 12518397 175146..176375 1 NC_017530.1 Nucleoside recognition domain-containing protein 176375 12518397 PPUBIRD1_0167 Pseudomonas putida BIRD-1 Nucleoside recognition domain-containing protein YP_005928080.1 175146 D 931281 CDS YP_005928081.1 386009804 12518398 complement(176357..176992) 1 NC_017530.1 Putative lipoprotein 176992 12518398 PPUBIRD1_0168 Pseudomonas putida BIRD-1 Putative lipoprotein YP_005928081.1 176357 R 931281 CDS YP_005928082.1 386009805 12518399 complement(176989..177927) 1 NC_017530.1 hypothetical protein 177927 12518399 PPUBIRD1_0169 Pseudomonas putida BIRD-1 hypothetical protein YP_005928082.1 176989 R 931281 CDS YP_005928083.1 386009806 12518400 complement(177931..178722) 1 NC_017530.1 ABC transporter 178722 12518400 PPUBIRD1_0170 Pseudomonas putida BIRD-1 ABC transporter YP_005928083.1 177931 R 931281 CDS YP_005928084.1 386009807 12518401 complement(178719..179843) 1 NC_017530.1 hypothetical protein 179843 12518401 PPUBIRD1_0171 Pseudomonas putida BIRD-1 hypothetical protein YP_005928084.1 178719 R 931281 CDS YP_005928085.1 386009808 12518402 complement(179984..181009) 1 NC_017530.1 hypothetical protein 181009 12518402 PPUBIRD1_0172 Pseudomonas putida BIRD-1 hypothetical protein YP_005928085.1 179984 R 931281 CDS YP_005928086.1 386009809 12518403 complement(181103..182509) 1 NC_017530.1 Peptidase M16 domain-containing protein 182509 12518403 PPUBIRD1_0173 Pseudomonas putida BIRD-1 Peptidase M16 domain-containing protein YP_005928086.1 181103 R 931281 CDS YP_005928087.1 386009810 12518404 complement(182540..184219) 1 NC_017530.1 Sodium-dependent inorganic phosphate (Pi) transporter 184219 12518404 PPUBIRD1_0174 Pseudomonas putida BIRD-1 Sodium-dependent inorganic phosphate (Pi) transporter YP_005928087.1 182540 R 931281 CDS YP_005928088.1 386009811 12518405 complement(184471..185241) 1 NC_017530.1 integral membrane protein TerC; protein TerC 185241 terC 12518405 terC Pseudomonas putida BIRD-1 protein TerC YP_005928088.1 184471 R 931281 CDS YP_005928089.1 386009812 12518406 complement(185311..186618) 1 NC_017530.1 citrate transporter 186618 12518406 PPUBIRD1_0176 Pseudomonas putida BIRD-1 citrate transporter YP_005928089.1 185311 R 931281 CDS YP_005928090.1 386009813 12518407 186883..187287 1 NC_017530.1 hypothetical protein 187287 12518407 PPUBIRD1_0177 Pseudomonas putida BIRD-1 hypothetical protein YP_005928090.1 186883 D 931281 CDS YP_005928091.1 386009814 12518408 complement(187326..189281) 1 NC_017530.1 hypothetical protein 189281 12518408 PPUBIRD1_0178 Pseudomonas putida BIRD-1 hypothetical protein YP_005928091.1 187326 R 931281 CDS YP_005928092.1 386009815 12518409 complement(189278..189598) 1 NC_017530.1 hypothetical protein 189598 12518409 PPUBIRD1_0179 Pseudomonas putida BIRD-1 hypothetical protein YP_005928092.1 189278 R 931281 CDS YP_005928093.1 386009816 12518410 complement(189635..189928) 1 NC_017530.1 hypothetical protein 189928 12518410 PPUBIRD1_0180 Pseudomonas putida BIRD-1 hypothetical protein YP_005928093.1 189635 R 931281 CDS YP_005928094.1 386009817 12518411 complement(190016..190333) 1 NC_017530.1 hypothetical protein 190333 12518411 PPUBIRD1_0181 Pseudomonas putida BIRD-1 hypothetical protein YP_005928094.1 190016 R 931281 CDS YP_005928095.1 386009818 12518412 complement(190642..190857) 1 NC_017530.1 hypothetical protein 190857 12518412 PPUBIRD1_0182 Pseudomonas putida BIRD-1 hypothetical protein YP_005928095.1 190642 R 931281 CDS YP_005928096.1 386009819 12518413 complement(191231..192724) 1 NC_017530.1 Acetyl-CoA hydrolase/transferase family protein 192724 12518413 PPUBIRD1_0183 Pseudomonas putida BIRD-1 Acetyl-CoA hydrolase/transferase family protein YP_005928096.1 191231 R 931281 CDS YP_005928097.1 386009820 12518414 complement(192911..194347) 1 NC_017530.1 Nicotinamide nucleotide transhydrogenase subunit beta; protein PntB 194347 pntB 12518414 pntB Pseudomonas putida BIRD-1 protein PntB YP_005928097.1 192911 R 931281 CDS YP_005928098.1 386009821 12518415 complement(194350..194664) 1 NC_017530.1 Nicotinamide nucleotide transhydrogenase subunit alpha 2 194664 12518415 PPUBIRD1_0185 Pseudomonas putida BIRD-1 Nicotinamide nucleotide transhydrogenase subunit alpha 2 YP_005928098.1 194350 R 931281 CDS YP_005928099.1 386009822 12518416 complement(194676..195797) 1 NC_017530.1 Nicotinamide nucleotide transhydrogenase subunit alpha 1 195797 12518416 PPUBIRD1_0186 Pseudomonas putida BIRD-1 Nicotinamide nucleotide transhydrogenase subunit alpha 1 YP_005928099.1 194676 R 931281 CDS YP_005928100.1 386009823 12518417 complement(196217..197134) 1 NC_017530.1 LysR family transcriptional regulator 197134 12518417 PPUBIRD1_0187 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005928100.1 196217 R 931281 CDS YP_005928101.1 386009824 12518418 197295..198476 1 NC_017530.1 Acyl-CoA dehydrogenase domain-containing protein 198476 12518418 PPUBIRD1_0188 Pseudomonas putida BIRD-1 Acyl-CoA dehydrogenase domain-containing protein YP_005928101.1 197295 D 931281 CDS YP_005928102.1 386009825 12518419 198490..199710 1 NC_017530.1 formyl-CoA transferase 199710 12518419 PPUBIRD1_0189 Pseudomonas putida BIRD-1 formyl-CoA transferase YP_005928102.1 198490 D 931281 CDS YP_005928103.1 386009826 12518427 complement(210967..213453) 1 NC_017530.1 TonB-dependent siderophore receptor 213453 12518427 PPUBIRD1_0190 Pseudomonas putida BIRD-1 TonB-dependent siderophore receptor YP_005928103.1 210967 R 931281 CDS YP_005928104.1 386009827 12518428 complement(213547..214503) 1 NC_017530.1 anti-FecI sigma factor, FecR; FecR protein 214503 fecR 12518428 fecR Pseudomonas putida BIRD-1 FecR protein YP_005928104.1 213547 R 931281 CDS YP_005928105.1 386009828 12518429 complement(214508..215011) 1 NC_017530.1 ECF subfamily RNA polymerase sigma factor; FecI 215011 fecI 12518429 fecI Pseudomonas putida BIRD-1 FecI YP_005928105.1 214508 R 931281 CDS YP_005928106.1 386009829 12518430 complement(215118..215807) 1 NC_017530.1 GntR family transcriptional regulator 215807 12518430 PPUBIRD1_0193 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005928106.1 215118 R 931281 CDS YP_005928107.1 386009830 12518431 216010..216771 1 NC_017530.1 hypothetical protein 216771 12518431 PPUBIRD1_0194 Pseudomonas putida BIRD-1 hypothetical protein YP_005928107.1 216010 D 931281 CDS YP_005928108.1 386009831 12518432 216782..218728 1 NC_017530.1 Diguanylate cyclase/phosphodiesterase 218728 12518432 PPUBIRD1_0195 Pseudomonas putida BIRD-1 Diguanylate cyclase/phosphodiesterase YP_005928108.1 216782 D 931281 CDS YP_005928109.1 386009832 12518433 complement(218855..220231) 1 NC_017530.1 HlyD family type I secretion membrane fusion protein 220231 12518433 PPUBIRD1_0196 Pseudomonas putida BIRD-1 HlyD family type I secretion membrane fusion protein YP_005928109.1 218855 R 931281 CDS YP_005928110.1 386009833 12518434 complement(220221..222377) 1 NC_017530.1 Toxin secretion ATP-binding protein 222377 12518434 PPUBIRD1_0197 Pseudomonas putida BIRD-1 Toxin secretion ATP-binding protein YP_005928110.1 220221 R 931281 CDS YP_005928111.1 386009834 12518435 223371..249419 1 NC_017530.1 Surface adhesion protein, putative 249419 12518435 PPUBIRD1_0199 Pseudomonas putida BIRD-1 Surface adhesion protein, putative YP_005928111.1 223371 D 931281 CDS YP_005928112.1 386009835 12518436 249565..249906 1 NC_017530.1 hypothetical protein 249906 12518436 PPUBIRD1_0200 Pseudomonas putida BIRD-1 hypothetical protein YP_005928112.1 249565 D 931281 CDS YP_005928113.1 386009836 12518437 249962..250099 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 250099 12518437 PPUBIRD1_0201 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005928113.1 249962 D 931281 CDS YP_005928114.1 386009837 12518438 complement(251533..252093) 1 NC_017530.1 Transcriptional factor-related protein 252093 12518438 PPUBIRD1_0202 Pseudomonas putida BIRD-1 Transcriptional factor-related protein YP_005928114.1 251533 R 931281 CDS YP_005928115.1 386009838 12518439 252301..253095 1 NC_017530.1 Sel1 domain-containing protein repeat-containing protein 253095 12518439 PPUBIRD1_0203 Pseudomonas putida BIRD-1 Sel1 domain-containing protein repeat-containing protein YP_005928115.1 252301 D 931281 CDS YP_005928116.1 386009839 12518440 253217..253681 1 NC_017530.1 MarR family transcriptional regulator 253681 12518440 PPUBIRD1_0204 Pseudomonas putida BIRD-1 MarR family transcriptional regulator YP_005928116.1 253217 D 931281 CDS YP_005928117.1 386009840 12518441 253678..255765 1 NC_017530.1 Fusaric acid resistance protein region 255765 12518441 PPUBIRD1_0205 Pseudomonas putida BIRD-1 Fusaric acid resistance protein region YP_005928117.1 253678 D 931281 CDS YP_005928118.1 386009841 12518442 255762..255974 1 NC_017530.1 hypothetical protein 255974 12518442 PPUBIRD1_0206 Pseudomonas putida BIRD-1 hypothetical protein YP_005928118.1 255762 D 931281 CDS YP_005928119.1 386009842 12518443 255971..256846 1 NC_017530.1 Secretion protein HlyD family protein 256846 12518443 PPUBIRD1_0207 Pseudomonas putida BIRD-1 Secretion protein HlyD family protein YP_005928119.1 255971 D 931281 CDS YP_005928120.1 386009843 12518444 256843..258261 1 NC_017530.1 RND efflux transporter 258261 12518444 PPUBIRD1_0208 Pseudomonas putida BIRD-1 RND efflux transporter YP_005928120.1 256843 D 931281 CDS YP_005928121.1 386009844 12518445 258372..260315 1 NC_017530.1 Cytochrome c family protein 260315 12518445 PPUBIRD1_0209 Pseudomonas putida BIRD-1 Cytochrome c family protein YP_005928121.1 258372 D 931281 CDS YP_005928122.1 386009845 12518446 complement(260378..260623) 1 NC_017530.1 hypothetical protein 260623 12518446 PPUBIRD1_0210 Pseudomonas putida BIRD-1 hypothetical protein YP_005928122.1 260378 R 931281 CDS YP_005928123.1 386009846 12518447 complement(260693..260995) 1 NC_017530.1 hypothetical protein 260995 12518447 PPUBIRD1_0211 Pseudomonas putida BIRD-1 hypothetical protein YP_005928123.1 260693 R 931281 CDS YP_005928124.1 386009847 12518448 261144..261806 1 NC_017530.1 glutathione S-transferase family protein; GstE 261806 gstE 12518448 gstE Pseudomonas putida BIRD-1 GstE YP_005928124.1 261144 D 931281 CDS YP_005928125.1 386009848 12518449 complement(261931..263325) 1 NC_017530.1 Argininosuccinate lyase; ArlY 263325 arlY 12518449 arlY Pseudomonas putida BIRD-1 ArlY YP_005928125.1 261931 R 931281 CDS YP_005928126.1 386009849 12518450 263623..264366 1 NC_017530.1 LytTR family two component transcriptional regulator; PprA 264366 pprA 12518450 pprA Pseudomonas putida BIRD-1 PprA YP_005928126.1 263623 D 931281 CDS YP_005928127.1 386009850 12518451 264486..265427 1 NC_017530.1 Porphobilinogen deaminase; HemC protein 265427 hemC 12518451 hemC Pseudomonas putida BIRD-1 HemC protein YP_005928127.1 264486 D 931281 CDS YP_005928128.1 386009851 12518452 265424..266191 1 NC_017530.1 uroporphyrinogen-III synthase; HemD protein 266191 hemD 12518452 hemD Pseudomonas putida BIRD-1 HemD protein YP_005928128.1 265424 D 931281 CDS YP_005928129.1 386009852 12518453 266237..267337 1 NC_017530.1 Uroporphyrin-III C-methyltransferase, putative 267337 12518453 PPUBIRD1_0218 Pseudomonas putida BIRD-1 Uroporphyrin-III C-methyltransferase, putative YP_005928129.1 266237 D 931281 CDS YP_005928130.1 386009853 12518454 267334..268572 1 NC_017530.1 HemY domain protein; protein HemY 268572 hemY 12518454 hemY Pseudomonas putida BIRD-1 protein HemY YP_005928130.1 267334 D 931281 CDS YP_005928131.1 386009854 12518455 268795..269301 1 NC_017530.1 Disulfide bond formation protein B 2; DsbB 269301 dsbB 12518455 dsbB Pseudomonas putida BIRD-1 DsbB YP_005928131.1 268795 D 931281 CDS YP_005928132.1 386009855 12518456 269533..270003 1 NC_017530.1 anti-RNA polymerase sigma 70 factor; PfrA 270003 pfrA 12518456 pfrA Pseudomonas putida BIRD-1 PfrA YP_005928132.1 269533 D 931281 CDS YP_005928133.1 386009856 12518457 complement(270012..270617) 1 NC_017530.1 peptidyl-prolyl cis-trans isomerase FklB; FklB 270617 fklB 12518457 fklB Pseudomonas putida BIRD-1 FklB YP_005928133.1 270012 R 931281 CDS YP_005928134.1 386009857 12518458 270829..271764 1 NC_017530.1 alginate regulatory protein AlgP; AlgP 271764 algP 12518458 algP Pseudomonas putida BIRD-1 AlgP YP_005928134.1 270829 D 931281 CDS YP_005928135.1 386009858 12518459 complement(271743..272222) 1 NC_017530.1 hypothetical protein 272222 12518459 PPUBIRD1_0224 Pseudomonas putida BIRD-1 hypothetical protein YP_005928135.1 271743 R 931281 CDS YP_005928136.1 386009859 12518460 272336..274183 1 NC_017530.1 ABC transporter ATP-binding protein 274183 12518460 PPUBIRD1_0225 Pseudomonas putida BIRD-1 ABC transporter ATP-binding protein YP_005928136.1 272336 D 931281 CDS YP_005928137.1 386009860 12518461 274183..274770 1 NC_017530.1 hypothetical protein 274770 12518461 PPUBIRD1_0226 Pseudomonas putida BIRD-1 hypothetical protein YP_005928137.1 274183 D 931281 CDS YP_005928138.1 386009861 12518462 274969..275601 1 NC_017530.1 amino acid transporter LysE; LysE 275601 lysE 12518462 lysE Pseudomonas putida BIRD-1 LysE YP_005928138.1 274969 D 931281 CDS YP_005928139.1 386009862 12518463 complement(275650..276402) 1 NC_017530.1 hypothetical protein 276402 12518463 PPUBIRD1_0228 Pseudomonas putida BIRD-1 hypothetical protein YP_005928139.1 275650 R 931281 CDS YP_005928140.1 386009863 12518464 complement(276405..277751) 1 NC_017530.1 hypothetical protein 277751 12518464 PPUBIRD1_0229 Pseudomonas putida BIRD-1 hypothetical protein YP_005928140.1 276405 R 931281 CDS YP_005928141.1 386009864 12518465 277850..278308 1 NC_017530.1 YbaK/prolyl-tRNA synthetase associated domain-containing protein 278308 12518465 PPUBIRD1_0230 Pseudomonas putida BIRD-1 YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_005928141.1 277850 D 931281 CDS YP_005928142.1 386009865 12518466 278370..278612 1 NC_017530.1 hypothetical protein 278612 12518466 PPUBIRD1_0231 Pseudomonas putida BIRD-1 hypothetical protein YP_005928142.1 278370 D 931281 CDS YP_005928143.1 386009866 12518467 278718..279320 1 NC_017530.1 hypothetical protein 279320 12518467 PPUBIRD1_0232 Pseudomonas putida BIRD-1 hypothetical protein YP_005928143.1 278718 D 931281 CDS YP_005928144.1 386009867 12518468 complement(279327..279764) 1 NC_017530.1 hypothetical protein 279764 12518468 PPUBIRD1_0233 Pseudomonas putida BIRD-1 hypothetical protein YP_005928144.1 279327 R 931281 CDS YP_005928145.1 386009868 12518469 complement(279934..281664) 1 NC_017530.1 hypothetical protein 281664 12518469 PPUBIRD1_0234 Pseudomonas putida BIRD-1 hypothetical protein YP_005928145.1 279934 R 931281 CDS YP_005928146.1 386009869 12518471 282024..282149 1 NC_017530.1 Arylsulfotransferase 282149 12518471 PPUBIRD1_0235 Pseudomonas putida BIRD-1 Arylsulfotransferase YP_005928146.1 282024 D 931281 CDS YP_005928147.1 386009870 12518472 282379..283821 1 NC_017530.1 Succinate-semialdehyde dehydrogenase [NADP+]; GabD 283821 gabD 12518472 gabD Pseudomonas putida BIRD-1 GabD YP_005928147.1 282379 D 931281 CDS YP_005928148.1 386009871 12518473 284004..285281 1 NC_017530.1 4-aminobutyrate aminotransferase; bifunctional; GabT protein 285281 gabT 12518473 gabT Pseudomonas putida BIRD-1 GabT protein YP_005928148.1 284004 D 931281 CDS YP_005928149.1 386009872 12518474 285419..286678 1 NC_017530.1 Putative signal transduction protein 286678 12518474 PPUBIRD1_0238 Pseudomonas putida BIRD-1 Putative signal transduction protein YP_005928149.1 285419 D 931281 CDS YP_005928150.1 386009873 12518475 complement(286769..287797) 1 NC_017530.1 Diguanylate cyclase with PAS/PAC sensor 287797 12518475 PPUBIRD1_0239 Pseudomonas putida BIRD-1 Diguanylate cyclase with PAS/PAC sensor YP_005928150.1 286769 R 931281 CDS YP_005928151.1 386009874 12518476 complement(287897..289081) 1 NC_017530.1 Fatty acid desaturase 289081 12518476 PPUBIRD1_0240 Pseudomonas putida BIRD-1 Fatty acid desaturase YP_005928151.1 287897 R 931281 CDS YP_005928152.1 386009875 12518477 289228..291123 1 NC_017530.1 Sensory box protein 291123 12518477 PPUBIRD1_0241 Pseudomonas putida BIRD-1 Sensory box protein YP_005928152.1 289228 D 931281 CDS YP_005928153.1 386009876 12518478 complement(291151..291795) 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 291795 12518478 PPUBIRD1_0242 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005928153.1 291151 R 931281 CDS YP_005928154.1 386009877 12518479 complement(291785..292894) 1 NC_017530.1 Methionine import ATP-binding protein metN2; MetN2 292894 metN2 12518479 metN2 Pseudomonas putida BIRD-1 MetN2 YP_005928154.1 291785 R 931281 CDS YP_005928155.1 386009878 12518480 complement(292896..293696) 1 NC_017530.1 NLPA lipoprotein 293696 12518480 PPUBIRD1_0244 Pseudomonas putida BIRD-1 NLPA lipoprotein YP_005928155.1 292896 R 931281 CDS YP_005928156.1 386009879 12518481 complement(293689..295074) 1 NC_017530.1 Dibenzothiophene desulfurization enzyme A; protein SoxA 295074 soxA 12518481 soxA Pseudomonas putida BIRD-1 protein SoxA YP_005928156.1 293689 R 931281 CDS YP_005928157.1 386009880 12518482 complement(295074..296255) 1 NC_017530.1 Dibenzothiophene desulfurization enzyme C; SoxC 296255 soxC 12518482 soxC Pseudomonas putida BIRD-1 SoxC YP_005928157.1 295074 R 931281 CDS YP_005928158.1 386009881 12518483 complement(296398..297639) 1 NC_017530.1 Dibenzothiophene desulfurization enzyme C; SoxC_2 297639 soxC_2 12518483 soxC_2 Pseudomonas putida BIRD-1 SoxC_2 YP_005928158.1 296398 R 931281 CDS YP_005928159.1 386009882 12518484 complement(297953..298711) 1 NC_017530.1 Putative amino-acid ABC transporter ATP-binding protein 298711 12518484 PPUBIRD1_0249 Pseudomonas putida BIRD-1 Putative amino-acid ABC transporter ATP-binding protein YP_005928159.1 297953 R 931281 CDS YP_005928160.1 386009883 12518485 complement(298714..299382) 1 NC_017530.1 Polar amino acid ABC transporter inner membrane subunit 299382 12518485 PPUBIRD1_0250 Pseudomonas putida BIRD-1 Polar amino acid ABC transporter inner membrane subunit YP_005928160.1 298714 R 931281 CDS YP_005928161.1 386009884 12518486 complement(299379..300173) 1 NC_017530.1 Cystine transporter subunit 300173 12518486 PPUBIRD1_0251 Pseudomonas putida BIRD-1 Cystine transporter subunit YP_005928161.1 299379 R 931281 CDS YP_005928162.1 386009885 12518487 300483..301415 1 NC_017530.1 Serine O-acetyltransferase 301415 12518487 PPUBIRD1_0252 Pseudomonas putida BIRD-1 Serine O-acetyltransferase YP_005928162.1 300483 D 931281 CDS YP_005928163.1 386009886 12518488 301686..303542 1 NC_017530.1 Choline/carnitine/betaine transporter 303542 12518488 PPUBIRD1_0254 Pseudomonas putida BIRD-1 Choline/carnitine/betaine transporter YP_005928163.1 301686 D 931281 CDS YP_005928164.1 386009887 12518489 303539..303688 1 NC_017530.1 Choline/carnitine/betaine transporter 303688 12518489 PPUBIRD1_0255 Pseudomonas putida BIRD-1 Choline/carnitine/betaine transporter YP_005928164.1 303539 D 931281 CDS YP_005928165.1 386009888 12518490 complement(303813..304646) 1 NC_017530.1 taurine dioxygenase; TauD 304646 tauD 12518490 tauD Pseudomonas putida BIRD-1 TauD YP_005928165.1 303813 R 931281 CDS YP_005928166.1 386009889 12518491 complement(304695..305534) 1 NC_017530.1 Taurine transport system permease protein; TauC 305534 tauC 12518491 tauC Pseudomonas putida BIRD-1 TauC YP_005928166.1 304695 R 931281 CDS YP_005928167.1 386009890 12518492 complement(305531..306319) 1 NC_017530.1 Taurine import ATP-binding protein tauB; TauB 306319 tauB 12518492 tauB Pseudomonas putida BIRD-1 TauB YP_005928167.1 305531 R 931281 CDS YP_005928168.1 386009891 12518493 complement(306333..307304) 1 NC_017530.1 taurine ABC transporter, periplasmic binding protein; TauA 307304 tauA 12518493 tauA Pseudomonas putida BIRD-1 TauA YP_005928168.1 306333 R 931281 CDS YP_005928169.1 386009892 12518494 307779..309119 1 NC_017530.1 Outer membrane porin 309119 12518494 PPUBIRD1_0260 Pseudomonas putida BIRD-1 Outer membrane porin YP_005928169.1 307779 D 931281 CDS YP_005928170.1 386009893 12518495 309285..309923 1 NC_017530.1 peroxidase; LsfA 309923 lsfA 12518495 lsfA Pseudomonas putida BIRD-1 LsfA YP_005928170.1 309285 D 931281 CDS YP_005928171.1 386009894 12518496 310143..310736 1 NC_017530.1 FMN reductase; SsuE 310736 ssuE 12518496 ssuE Pseudomonas putida BIRD-1 SsuE YP_005928171.1 310143 D 931281 CDS YP_005928172.1 386009895 12518497 310822..311787 1 NC_017530.1 ABC-type transporter periplasmic sulfonate-binding protein; SsuA protein 311787 ssuA 12518497 ssuA Pseudomonas putida BIRD-1 SsuA protein YP_005928172.1 310822 D 931281 CDS YP_005928173.1 386009896 12518498 311847..312995 1 NC_017530.1 Alkanesulfonate monooxygenase; protein SsuD 312995 ssuD 12518498 ssuD Pseudomonas putida BIRD-1 protein SsuD YP_005928173.1 311847 D 931281 CDS YP_005928174.1 386009897 12518499 313006..313803 1 NC_017530.1 Aliphatic sulfonates transport permease protein; protein SsuC 313803 ssuC 12518499 ssuC Pseudomonas putida BIRD-1 protein SsuC YP_005928174.1 313006 D 931281 CDS YP_005928175.1 386009898 12518500 313800..314612 1 NC_017530.1 Aliphatic sulfonates import ATP-binding protein ssuB; protein SsuB 314612 ssuB 12518500 ssuB Pseudomonas putida BIRD-1 protein SsuB YP_005928175.1 313800 D 931281 CDS YP_005928176.1 386009899 12518501 314640..314855 1 NC_017530.1 TOBE domain-containing protein 314855 12518501 PPUBIRD1_0267 Pseudomonas putida BIRD-1 TOBE domain-containing protein YP_005928176.1 314640 D 931281 CDS YP_005928177.1 386009900 12518502 complement(314998..315630) 1 NC_017530.1 TetR family transcriptional regulator 315630 12518502 PPUBIRD1_0268 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005928177.1 314998 R 931281 CDS YP_005928178.1 386009901 12518503 complement(315630..317207) 1 NC_017530.1 Glutamate--cysteine ligase; GshA 317207 gshA 12518503 gshA Pseudomonas putida BIRD-1 GshA YP_005928178.1 315630 R 931281 CDS YP_005928179.1 386009902 12518504 complement(317361..317744) 1 NC_017530.1 Thioesterase superfamily protein 317744 12518504 PPUBIRD1_0270 Pseudomonas putida BIRD-1 Thioesterase superfamily protein YP_005928179.1 317361 R 931281 CDS YP_005928180.1 386009903 12518505 complement(317744..320068) 1 NC_017530.1 S1 RNA-binding domain-containing protein 320068 12518505 PPUBIRD1_0271 Pseudomonas putida BIRD-1 S1 RNA-binding domain-containing protein YP_005928180.1 317744 R 931281 CDS YP_005928181.1 386009904 12518506 320286..321026 1 NC_017530.1 osmolarity response regulator; OmpR 321026 ompR 12518506 ompR Pseudomonas putida BIRD-1 OmpR YP_005928181.1 320286 D 931281 CDS YP_005928182.1 386009905 12518507 321040..322353 1 NC_017530.1 integral membrane sensor signal transduction histidine kinase; EnvZ protein 322353 envZ 12518507 envZ Pseudomonas putida BIRD-1 EnvZ protein YP_005928182.1 321040 D 931281 CDS YP_005928183.1 386009906 12518508 complement(322451..323356) 1 NC_017530.1 Ribosomal protein S6 modification protein; RimK protein 323356 rimK 12518508 rimK Pseudomonas putida BIRD-1 RimK protein YP_005928183.1 322451 R 931281 CDS YP_005928184.1 386009907 12518509 complement(323353..323835) 1 NC_017530.1 hypothetical protein 323835 12518509 PPUBIRD1_0276 Pseudomonas putida BIRD-1 hypothetical protein YP_005928184.1 323353 R 931281 CDS YP_005928185.1 386009908 12518510 323945..324346 1 NC_017530.1 RNA-binding S4 domain protein; HslR 324346 hslR 12518510 hslR Pseudomonas putida BIRD-1 HslR YP_005928185.1 323945 D 931281 CDS YP_005928186.1 386009909 12518511 complement(324374..325168) 1 NC_017530.1 Phosphoesterase, PA-phosphatase related protein 325168 12518511 PPUBIRD1_0278 Pseudomonas putida BIRD-1 Phosphoesterase, PA-phosphatase related protein YP_005928186.1 324374 R 931281 CDS YP_005928187.1 386009910 12518512 325289..326188 1 NC_017530.1 33 kDa chaperonin; protein HslO 326188 hslO 12518512 hslO Pseudomonas putida BIRD-1 protein HslO YP_005928187.1 325289 D 931281 CDS YP_005928188.1 386009911 12518513 326368..327909 1 NC_017530.1 Phosphoenolpyruvate carboxykinase [ATP]; PckA 327909 pckA 12518513 pckA Pseudomonas putida BIRD-1 PckA YP_005928188.1 326368 D 931281 CDS YP_005928189.1 386009912 12518514 328191..328631 1 NC_017530.1 Thioesterase superfamily protein 328631 12518514 PPUBIRD1_0281 Pseudomonas putida BIRD-1 Thioesterase superfamily protein YP_005928189.1 328191 D 931281 CDS YP_005928190.1 386009913 12518515 complement(328688..329170) 1 NC_017530.1 hypothetical protein 329170 12518515 PPUBIRD1_0282 Pseudomonas putida BIRD-1 hypothetical protein YP_005928190.1 328688 R 931281 CDS YP_005928191.1 386009914 12518516 complement(329367..331613) 1 NC_017530.1 Molybdopterin oxidoreductase, alpha subunit 331613 12518516 PPUBIRD1_0283 Pseudomonas putida BIRD-1 Molybdopterin oxidoreductase, alpha subunit YP_005928191.1 329367 R 931281 CDS YP_005928192.1 386009915 12518517 complement(331718..332503) 1 NC_017530.1 formate dehydrogenase family accessory protein FdhD; protein FdhD 332503 fdhD 12518517 fdhD Pseudomonas putida BIRD-1 protein FdhD YP_005928192.1 331718 R 931281 CDS YP_005928193.1 386009916 12518518 332724..333164 1 NC_017530.1 LysM domain/BON superfamily protein 333164 12518518 PPUBIRD1_0285 Pseudomonas putida BIRD-1 LysM domain/BON superfamily protein YP_005928193.1 332724 D 931281 CDS YP_005928194.1 386009917 12518519 complement(333276..333938) 1 NC_017530.1 HAD family hydrolase 333938 12518519 PPUBIRD1_0286 Pseudomonas putida BIRD-1 HAD family hydrolase YP_005928194.1 333276 R 931281 CDS YP_005928195.1 386009918 12518520 334003..334569 1 NC_017530.1 ADP-ribose diphosphatase NudE; NudE 334569 nudE 12518520 nudE Pseudomonas putida BIRD-1 NudE YP_005928195.1 334003 D 931281 CDS YP_005928196.1 386009919 12518521 334566..335384 1 NC_017530.1 3'(2'),5'-bisphosphate nucleotidase 335384 12518521 PPUBIRD1_0288 Pseudomonas putida BIRD-1 3'(2'),5'-bisphosphate nucleotidase YP_005928196.1 334566 D 931281 CDS YP_005928197.1 386009920 12518522 complement(335545..336000) 1 NC_017530.1 hypothetical protein 336000 12518522 PPUBIRD1_0289 Pseudomonas putida BIRD-1 hypothetical protein YP_005928197.1 335545 R 931281 CDS YP_005928198.1 386009921 12518523 complement(336000..337406) 1 NC_017530.1 Two component, sigma54 specific, transcriptional regulator, Fis family 337406 12518523 PPUBIRD1_0290 Pseudomonas putida BIRD-1 Two component, sigma54 specific, transcriptional regulator, Fis family YP_005928198.1 336000 R 931281 CDS YP_005928199.1 386009922 12518524 complement(337403..339217) 1 NC_017530.1 Integral membrane sensor signal transduction histidine kinase 339217 12518524 PPUBIRD1_0291 Pseudomonas putida BIRD-1 Integral membrane sensor signal transduction histidine kinase YP_005928199.1 337403 R 931281 CDS YP_005928200.1 386009923 12518525 complement(339260..339805) 1 NC_017530.1 DTDP-4-dehydrorhamnose 3,5-epimerase 339805 12518525 PPUBIRD1_0292 Pseudomonas putida BIRD-1 DTDP-4-dehydrorhamnose 3,5-epimerase YP_005928200.1 339260 R 931281 CDS YP_005928201.1 386009924 12518526 340082..341188 1 NC_017530.1 Agmatine deiminase; protein AguA 341188 aguA 12518526 aguA Pseudomonas putida BIRD-1 protein AguA YP_005928201.1 340082 D 931281 CDS YP_005928202.1 386009925 12518527 complement(341645..343714) 1 NC_017530.1 TonB-dependent siderophore receptor 343714 12518527 PPUBIRD1_0294 Pseudomonas putida BIRD-1 TonB-dependent siderophore receptor YP_005928202.1 341645 R 931281 CDS YP_005928203.1 386009926 12518528 344189..345508 1 NC_017530.1 outer membrane porin; OprQ 345508 oprQ 12518528 oprQ Pseudomonas putida BIRD-1 OprQ YP_005928203.1 344189 D 931281 CDS YP_005928204.1 386009927 12518529 complement(345634..346590) 1 NC_017530.1 Integrase catalytic subunit 346590 12518529 PPUBIRD1_0296 Pseudomonas putida BIRD-1 Integrase catalytic subunit YP_005928204.1 345634 R 931281 CDS YP_005928205.1 386009928 12518530 complement(346695..348365) 1 NC_017530.1 glutamate synthase (NADPH) 348365 12518530 PPUBIRD1_0297 Pseudomonas putida BIRD-1 glutamate synthase (NADPH) YP_005928205.1 346695 R 931281 CDS YP_005928206.1 386009929 12518531 complement(348567..349934) 1 NC_017530.1 Integral membrane sensor signal transduction histidine kinase 349934 12518531 PPUBIRD1_0298 Pseudomonas putida BIRD-1 Integral membrane sensor signal transduction histidine kinase YP_005928206.1 348567 R 931281 CDS YP_005928207.1 386009930 12518532 complement(349936..350655) 1 NC_017530.1 winged helix family two component transcriptional regulator; protein GltR 350655 gltR 12518532 gltR Pseudomonas putida BIRD-1 protein GltR YP_005928207.1 349936 R 931281 CDS YP_005928208.1 386009931 12518533 350820..353093 1 NC_017530.1 TonB-dependent siderophore receptor 353093 12518533 PPUBIRD1_0300 Pseudomonas putida BIRD-1 TonB-dependent siderophore receptor YP_005928208.1 350820 D 931281 CDS YP_005928209.1 386009932 12518534 complement(353258..353464) 1 NC_017530.1 hypothetical protein 353464 12518534 PPUBIRD1_0301 Pseudomonas putida BIRD-1 hypothetical protein YP_005928209.1 353258 R 931281 CDS YP_005928210.1 386009933 12518535 353648..355255 1 NC_017530.1 hypothetical protein 355255 12518535 PPUBIRD1_0302 Pseudomonas putida BIRD-1 hypothetical protein YP_005928210.1 353648 D 931281 CDS YP_005928211.1 386009934 12518537 complement(355511..355759) 1 NC_017530.1 hypothetical protein 355759 12518537 PPUBIRD1_0303 Pseudomonas putida BIRD-1 hypothetical protein YP_005928211.1 355511 R 931281 CDS YP_005928212.1 386009935 12518538 356284..356574 1 NC_017530.1 hypothetical protein 356574 12518538 PPUBIRD1_0304 Pseudomonas putida BIRD-1 hypothetical protein YP_005928212.1 356284 D 931281 CDS YP_005928213.1 386009936 12518539 complement(356855..358060) 1 NC_017530.1 hypothetical protein 358060 12518539 PPUBIRD1_0305 Pseudomonas putida BIRD-1 hypothetical protein YP_005928213.1 356855 R 931281 CDS YP_005928214.1 386009937 12518540 complement(358172..358861) 1 NC_017530.1 Polar amino acid ABC transporter, inner membrane subunit 358861 12518540 PPUBIRD1_0306 Pseudomonas putida BIRD-1 Polar amino acid ABC transporter, inner membrane subunit YP_005928214.1 358172 R 931281 CDS YP_005928215.1 386009938 12518541 complement(358861..359553) 1 NC_017530.1 Polar amino acid ABC transporter, inner membrane subunit 359553 12518541 PPUBIRD1_0307 Pseudomonas putida BIRD-1 Polar amino acid ABC transporter, inner membrane subunit YP_005928215.1 358861 R 931281 CDS YP_005928216.1 386009939 12518542 complement(359608..360360) 1 NC_017530.1 amino acid ABC transporter substrate-binding protein 360360 12518542 PPUBIRD1_0308 Pseudomonas putida BIRD-1 amino acid ABC transporter substrate-binding protein YP_005928216.1 359608 R 931281 CDS YP_005928217.1 386009940 12518543 complement(360372..361145) 1 NC_017530.1 ABC transporter 361145 12518543 PPUBIRD1_0309 Pseudomonas putida BIRD-1 ABC transporter YP_005928217.1 360372 R 931281 CDS YP_005928218.1 386009941 12518544 361777..363162 1 NC_017530.1 GABA permease; GabP 363162 gabP 12518544 gabP Pseudomonas putida BIRD-1 GabP YP_005928218.1 361777 D 931281 CDS YP_005928219.1 386009942 12518545 complement(363401..363844) 1 NC_017530.1 hypothetical protein 363844 12518545 PPUBIRD1_0312 Pseudomonas putida BIRD-1 hypothetical protein YP_005928219.1 363401 R 931281 CDS YP_005928220.1 386009943 12518547 complement(364666..364938) 1 NC_017530.1 Fe(2+)-trafficking protein 364938 12518547 PPUBIRD1_0314 Pseudomonas putida BIRD-1 Fe(2+)-trafficking protein YP_005928220.1 364666 R 931281 CDS YP_005928221.1 386009944 12518548 complement(364935..366002) 1 NC_017530.1 A/G-specific adenine glycosylase; MutY protein 366002 mutY 12518548 mutY Pseudomonas putida BIRD-1 MutY protein YP_005928221.1 364935 R 931281 CDS YP_005928222.1 386009945 12518549 complement(365999..368251) 1 NC_017530.1 AsmA family protein 368251 12518549 PPUBIRD1_0316 Pseudomonas putida BIRD-1 AsmA family protein YP_005928222.1 365999 R 931281 CDS YP_005928223.1 386009946 12518550 368520..370181 1 NC_017530.1 Major facilitator transporter 370181 12518550 PPUBIRD1_0317 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005928223.1 368520 D 931281 CDS YP_005928224.1 386009947 12518551 370331..370963 1 NC_017530.1 imidazoleglycerol-phosphate dehydratase; protein HisB 370963 hisB 12518551 hisB Pseudomonas putida BIRD-1 protein HisB YP_005928224.1 370331 D 931281 CDS YP_005928225.1 386009948 12518552 370964..371602 1 NC_017530.1 Imidazole glycerol phosphate synthase subunit hisH; protein HisH 371602 hisH 12518552 hisH Pseudomonas putida BIRD-1 protein HisH YP_005928225.1 370964 D 931281 CDS YP_005928226.1 386009949 12518553 371603..371863 1 NC_017530.1 hypothetical protein 371863 12518553 PPUBIRD1_0320 Pseudomonas putida BIRD-1 hypothetical protein YP_005928226.1 371603 D 931281 CDS YP_005928227.1 386009950 12518554 371891..372628 1 NC_017530.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; HisA 372628 hisA 12518554 hisA Pseudomonas putida BIRD-1 HisA YP_005928227.1 371891 D 931281 CDS YP_005928228.1 386009951 12518555 372639..373409 1 NC_017530.1 Imidazole glycerol phosphate synthase subunit hisF; protein HisF 373409 hisF 12518555 hisF Pseudomonas putida BIRD-1 protein HisF YP_005928228.1 372639 D 931281 CDS YP_005928229.1 386009952 12518556 complement(373584..374762) 1 NC_017530.1 Glycine betaine/L-proline ABC transporter, ATP-binding subunit 374762 12518556 PPUBIRD1_0323 Pseudomonas putida BIRD-1 Glycine betaine/L-proline ABC transporter, ATP-binding subunit YP_005928229.1 373584 R 931281 CDS YP_005928230.1 386009953 12518557 complement(374759..375604) 1 NC_017530.1 Glycine betaine/L-proline ABC transporter, permease protein 375604 12518557 PPUBIRD1_0324 Pseudomonas putida BIRD-1 Glycine betaine/L-proline ABC transporter, permease protein YP_005928230.1 374759 R 931281 CDS YP_005928231.1 386009954 12518558 complement(375689..376636) 1 NC_017530.1 Glycine betaine/L-proline ABC transporter, periplasmic binding protein 376636 12518558 PPUBIRD1_0325 Pseudomonas putida BIRD-1 Glycine betaine/L-proline ABC transporter, periplasmic binding protein YP_005928231.1 375689 R 931281 CDS YP_005928232.1 386009955 12518559 377089..378465 1 NC_017530.1 L-serine dehydratase, iron-sulfur-dependent, single chain form; Sda 378465 sda 12518559 sda Pseudomonas putida BIRD-1 Sda YP_005928232.1 377089 D 931281 CDS YP_005928233.1 386009956 12518560 379028..380065 1 NC_017530.1 AraC family transcriptional regulator 380065 12518560 PPUBIRD1_0327 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005928233.1 379028 D 931281 CDS YP_005928234.1 386009957 12518561 complement(380187..380444) 1 NC_017530.1 hypothetical protein 380444 12518561 PPUBIRD1_0328 Pseudomonas putida BIRD-1 hypothetical protein YP_005928234.1 380187 R 931281 CDS YP_005928235.1 386009958 12518562 380815..382479 1 NC_017530.1 Ricin B lectin 382479 12518562 PPUBIRD1_0329 Pseudomonas putida BIRD-1 Ricin B lectin YP_005928235.1 380815 D 931281 CDS YP_005928236.1 386009959 12518563 complement(382524..382994) 1 NC_017530.1 hypothetical protein 382994 12518563 PPUBIRD1_0330 Pseudomonas putida BIRD-1 hypothetical protein YP_005928236.1 382524 R 931281 CDS YP_005928237.1 386009960 12518564 complement(383005..383970) 1 NC_017530.1 3-hydroxybutyryl-CoA dehydrogenase 383970 12518564 PPUBIRD1_0331 Pseudomonas putida BIRD-1 3-hydroxybutyryl-CoA dehydrogenase YP_005928237.1 383005 R 931281 CDS YP_005928238.1 386009961 12518565 complement(384133..385017) 1 NC_017530.1 hypothetical protein 385017 12518565 PPUBIRD1_0332 Pseudomonas putida BIRD-1 hypothetical protein YP_005928238.1 384133 R 931281 CDS YP_005928239.1 386009962 12518566 complement(385141..386085) 1 NC_017530.1 glycine betaine ABC transporter substrate-binding protein 386085 12518566 PPUBIRD1_0333 Pseudomonas putida BIRD-1 glycine betaine ABC transporter substrate-binding protein YP_005928239.1 385141 R 931281 CDS YP_005928240.1 386009963 12518567 386233..387177 1 NC_017530.1 AraC family transcriptional regulator 387177 12518567 PPUBIRD1_0334 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005928240.1 386233 D 931281 CDS YP_005928241.1 386009964 12518568 complement(387181..387798) 1 NC_017530.1 hypothetical protein 387798 12518568 PPUBIRD1_0335 Pseudomonas putida BIRD-1 hypothetical protein YP_005928241.1 387181 R 931281 CDS YP_005928242.1 386009965 12518569 complement(387872..388564) 1 NC_017530.1 hypothetical protein 388564 12518569 PPUBIRD1_0336 Pseudomonas putida BIRD-1 hypothetical protein YP_005928242.1 387872 R 931281 CDS YP_005928243.1 386009966 12518570 complement(388703..389119) 1 NC_017530.1 hypothetical protein 389119 12518570 PPUBIRD1_0337 Pseudomonas putida BIRD-1 hypothetical protein YP_005928243.1 388703 R 931281 CDS YP_005928244.1 386009967 12518571 389405..390382 1 NC_017530.1 membrane dipeptidase 390382 12518571 PPUBIRD1_0338 Pseudomonas putida BIRD-1 membrane dipeptidase YP_005928244.1 389405 D 931281 CDS YP_005928245.1 386009968 12518572 390458..390988 1 NC_017530.1 hypothetical protein 390988 12518572 PPUBIRD1_0339 Pseudomonas putida BIRD-1 hypothetical protein YP_005928245.1 390458 D 931281 CDS YP_005928246.1 386009969 12518573 391004..393064 1 NC_017530.1 Oxidoreductase, FMN-binding protein 393064 12518573 PPUBIRD1_0340 Pseudomonas putida BIRD-1 Oxidoreductase, FMN-binding protein YP_005928246.1 391004 D 931281 CDS YP_005928247.1 386009970 12518574 393243..395195 1 NC_017530.1 Iron-sulfur cluster-binding protein 395195 12518574 PPUBIRD1_0341 Pseudomonas putida BIRD-1 Iron-sulfur cluster-binding protein YP_005928247.1 393243 D 931281 CDS YP_005928248.1 386009971 12518575 395195..396427 1 NC_017530.1 Electron transfer flavoprotein, alpha subunit-like protein 396427 12518575 PPUBIRD1_0342 Pseudomonas putida BIRD-1 Electron transfer flavoprotein, alpha subunit-like protein YP_005928248.1 395195 D 931281 CDS YP_005928249.1 386009972 12518576 396450..397208 1 NC_017530.1 Electron transfer flavoprotein, alpha/beta-subunit-like protein 397208 12518576 PPUBIRD1_0343 Pseudomonas putida BIRD-1 Electron transfer flavoprotein, alpha/beta-subunit-like protein YP_005928249.1 396450 D 931281 CDS YP_005928250.1 386009973 12518577 complement(398762..400054) 1 NC_017530.1 Rieske (2Fe-2S) domain-containing protein 400054 12518577 PPUBIRD1_0344 Pseudomonas putida BIRD-1 Rieske (2Fe-2S) domain-containing protein YP_005928250.1 398762 R 931281 CDS YP_005928251.1 386009974 12518578 400350..401450 1 NC_017530.1 Oxidoreductase FAD-binding domain-containing protein 401450 12518578 PPUBIRD1_0346 Pseudomonas putida BIRD-1 Oxidoreductase FAD-binding domain-containing protein YP_005928251.1 400350 D 931281 CDS YP_005928252.1 386009975 12518579 complement(401559..403184) 1 NC_017530.1 methyl-accepting chemotaxis sensory transducer 403184 12518579 PPUBIRD1_0347 Pseudomonas putida BIRD-1 methyl-accepting chemotaxis sensory transducer YP_005928252.1 401559 R 931281 CDS YP_005928253.1 386009976 12518580 403451..403681 1 NC_017530.1 hypothetical protein 403681 12518580 PPUBIRD1_0348 Pseudomonas putida BIRD-1 hypothetical protein YP_005928253.1 403451 D 931281 CDS YP_005928254.1 386009977 12518581 403678..403980 1 NC_017530.1 hypothetical protein 403980 12518581 PPUBIRD1_0349 Pseudomonas putida BIRD-1 hypothetical protein YP_005928254.1 403678 D 931281 CDS YP_005928255.1 386009978 12518582 404162..406099 1 NC_017530.1 methyl-accepting chemotaxis sensory transducer 406099 12518582 PPUBIRD1_0350 Pseudomonas putida BIRD-1 methyl-accepting chemotaxis sensory transducer YP_005928255.1 404162 D 931281 CDS YP_005928256.1 386009979 12518583 complement(406132..407172) 1 NC_017530.1 Low specificity L-threonine aldolase 407172 12518583 PPUBIRD1_0351 Pseudomonas putida BIRD-1 Low specificity L-threonine aldolase YP_005928256.1 406132 R 931281 CDS YP_005928257.1 386009980 12518584 407497..408750 1 NC_017530.1 Serine hydroxymethyltransferase 1; GlyA protein 408750 glyA 12518584 glyA Pseudomonas putida BIRD-1 GlyA protein YP_005928257.1 407497 D 931281 CDS YP_005928258.1 386009981 12518585 408766..410016 1 NC_017530.1 sarcosine oxidase, beta subunit family; protein SoxB 410016 soxB 12518585 soxB Pseudomonas putida BIRD-1 protein SoxB YP_005928258.1 408766 D 931281 CDS YP_005928259.1 386009982 12518586 410031..410366 1 NC_017530.1 sarcosine oxidase, delta subunit family; SoxD 410366 soxD 12518586 soxD Pseudomonas putida BIRD-1 SoxD YP_005928259.1 410031 D 931281 CDS YP_005928260.1 386009983 12518587 410363..413377 1 NC_017530.1 Sarcosine oxidase subunit alpha; SoxA_2 413377 soxA_2 12518587 soxA_2 Pseudomonas putida BIRD-1 SoxA_2 YP_005928260.1 410363 D 931281 CDS YP_005928261.1 386009984 12518588 413547..414179 1 NC_017530.1 sarcosine oxidase, gamma subunit family; SoxG 414179 soxG 12518588 soxG Pseudomonas putida BIRD-1 SoxG YP_005928261.1 413547 D 931281 CDS YP_005928262.1 386009985 12518589 414191..415048 1 NC_017530.1 formyltetrahydrofolate deformylase; protein PurU 415048 purU 12518589 purU Pseudomonas putida BIRD-1 protein PurU YP_005928262.1 414191 D 931281 CDS YP_005928263.1 386009986 12518590 415350..416549 1 NC_017530.1 Glutathione-independent formaldehyde dehydrogenase 416549 12518590 PPUBIRD1_0359 Pseudomonas putida BIRD-1 Glutathione-independent formaldehyde dehydrogenase YP_005928263.1 415350 D 931281 CDS YP_005928264.1 386009987 12518591 418185..418760 1 NC_017530.1 hypothetical protein 418760 12518591 PPUBIRD1_0360 Pseudomonas putida BIRD-1 hypothetical protein YP_005928264.1 418185 D 931281 CDS YP_005928265.1 386009988 12518592 complement(418858..420207) 1 NC_017530.1 Amino acid permease-associated region 420207 12518592 PPUBIRD1_0361 Pseudomonas putida BIRD-1 Amino acid permease-associated region YP_005928265.1 418858 R 931281 CDS YP_005928266.1 386009989 12518593 complement(420447..421334) 1 NC_017530.1 phospholipid/glycerol acyltransferase 421334 12518593 PPUBIRD1_0362 Pseudomonas putida BIRD-1 phospholipid/glycerol acyltransferase YP_005928266.1 420447 R 931281 CDS YP_005928267.1 386009990 12518594 421517..422017 1 NC_017530.1 hypothetical protein 422017 12518594 PPUBIRD1_0363 Pseudomonas putida BIRD-1 hypothetical protein YP_005928267.1 421517 D 931281 CDS YP_005928268.1 386009991 12518595 422070..422837 1 NC_017530.1 DNA-binding response regulator CreB 422837 12518595 PPUBIRD1_0364 Pseudomonas putida BIRD-1 DNA-binding response regulator CreB YP_005928268.1 422070 D 931281 CDS YP_005928269.1 386009992 12518596 422837..424273 1 NC_017530.1 Sensory histidine kinase CreC 424273 12518596 PPUBIRD1_0365 Pseudomonas putida BIRD-1 Sensory histidine kinase CreC YP_005928269.1 422837 D 931281 CDS YP_005928270.1 386009993 12518597 424381..425709 1 NC_017530.1 hypothetical protein 425709 12518597 PPUBIRD1_0366 Pseudomonas putida BIRD-1 hypothetical protein YP_005928270.1 424381 D 931281 CDS YP_005928271.1 386009994 12518598 complement(425876..426490) 1 NC_017530.1 glutathione S-transferase 426490 12518598 PPUBIRD1_0367 Pseudomonas putida BIRD-1 glutathione S-transferase YP_005928271.1 425876 R 931281 CDS YP_005928272.1 386009995 12518599 complement(426503..427171) 1 NC_017530.1 Peptide methionine sulfoxide reductase msrA; protein MsrA 427171 msrA 12518599 msrA Pseudomonas putida BIRD-1 protein MsrA YP_005928272.1 426503 R 931281 CDS YP_005928273.1 386009996 12518600 complement(427340..430030) 1 NC_017530.1 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 430030 12518600 PPUBIRD1_0370 Pseudomonas putida BIRD-1 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) YP_005928273.1 427340 R 931281 CDS YP_005928274.1 386009997 12518601 complement(430392..432032) 1 NC_017530.1 dihydrolipoamide acetyltransferase; AceF 432032 aceF 12518601 aceF Pseudomonas putida BIRD-1 AceF YP_005928274.1 430392 R 931281 CDS YP_005928275.1 386009998 12518602 complement(432046..434691) 1 NC_017530.1 Pyruvate dehydrogenase E1 component; AceE 434691 aceE 12518602 aceE Pseudomonas putida BIRD-1 AceE YP_005928275.1 432046 R 931281 CDS YP_005928276.1 386009999 12518603 435075..438008 1 NC_017530.1 Glutamate-ammonia-ligase adenylyltransferase; protein GlnE 438008 glnE 12518603 glnE Pseudomonas putida BIRD-1 protein GlnE YP_005928276.1 435075 D 931281 CDS YP_005928277.1 386010000 12518604 438211..439260 1 NC_017530.1 lipopolysaccharide heptosyltransferase II; WaaF 439260 waaF 12518604 waaF Pseudomonas putida BIRD-1 WaaF YP_005928277.1 438211 D 931281 CDS YP_005928278.1 386010001 12518605 439261..440319 1 NC_017530.1 lipopolysaccharide heptosyltransferase I; WaaC 440319 waaC 12518605 waaC Pseudomonas putida BIRD-1 WaaC YP_005928278.1 439261 D 931281 CDS YP_005928279.1 386010002 12518606 440319..441443 1 NC_017530.1 lipopolysaccharide core biosynthesis protein WaaG; WaaG 441443 waaG 12518606 waaG Pseudomonas putida BIRD-1 WaaG YP_005928279.1 440319 D 931281 CDS YP_005928280.1 386010003 12518607 441440..442246 1 NC_017530.1 lipopolysaccharide kinase; WaaP 442246 waaP 12518607 waaP Pseudomonas putida BIRD-1 WaaP YP_005928280.1 441440 D 931281 CDS YP_005928281.1 386010004 12518608 442246..442980 1 NC_017530.1 Lipopolysaccharide kinase 442980 12518608 PPUBIRD1_0379 Pseudomonas putida BIRD-1 Lipopolysaccharide kinase YP_005928281.1 442246 D 931281 CDS YP_005928282.1 386010005 12518609 442977..443729 1 NC_017530.1 Lipopolysaccharide kinase 443729 12518609 PPUBIRD1_0380 Pseudomonas putida BIRD-1 Lipopolysaccharide kinase YP_005928282.1 442977 D 931281 CDS YP_005928283.1 386010006 12518610 443729..445171 1 NC_017530.1 hypothetical protein 445171 12518610 PPUBIRD1_0381 Pseudomonas putida BIRD-1 hypothetical protein YP_005928283.1 443729 D 931281 CDS YP_005928284.1 386010007 12518611 complement(445190..447976) 1 NC_017530.1 hypothetical protein 447976 12518611 PPUBIRD1_0382 Pseudomonas putida BIRD-1 hypothetical protein YP_005928284.1 445190 R 931281 CDS YP_005928285.1 386010008 12518612 complement(448226..449338) 1 NC_017530.1 PepSY-associated TM helix domain-containing protein 449338 12518612 PPUBIRD1_0384 Pseudomonas putida BIRD-1 PepSY-associated TM helix domain-containing protein YP_005928285.1 448226 R 931281 CDS YP_005928286.1 386010009 12518613 complement(449395..451827) 1 NC_017530.1 TonB-dependent siderophore receptor 451827 12518613 PPUBIRD1_0385 Pseudomonas putida BIRD-1 TonB-dependent siderophore receptor YP_005928286.1 449395 R 931281 CDS YP_005928287.1 386010010 12518614 complement(452080..453036) 1 NC_017530.1 Anti-FecI sigma factor, FecR 453036 12518614 PPUBIRD1_0387 Pseudomonas putida BIRD-1 Anti-FecI sigma factor, FecR YP_005928287.1 452080 R 931281 CDS YP_005928288.1 386010011 12518615 complement(453033..453551) 1 NC_017530.1 RNA polymerase sigma factor 453551 12518615 PPUBIRD1_0388 Pseudomonas putida BIRD-1 RNA polymerase sigma factor YP_005928288.1 453033 R 931281 CDS YP_005928289.1 386010012 12518616 complement(453699..454409) 1 NC_017530.1 DNA polymerase III subunit epsilon 454409 12518616 PPUBIRD1_0389 Pseudomonas putida BIRD-1 DNA polymerase III subunit epsilon YP_005928289.1 453699 R 931281 CDS YP_005928290.1 386010013 12518617 complement(454406..456343) 1 NC_017530.1 hypothetical protein 456343 12518617 PPUBIRD1_0390 Pseudomonas putida BIRD-1 hypothetical protein YP_005928290.1 454406 R 931281 CDS YP_005928291.1 386010014 12518618 456523..457005 1 NC_017530.1 Response regulator receiver protein 457005 12518618 PPUBIRD1_0391 Pseudomonas putida BIRD-1 Response regulator receiver protein YP_005928291.1 456523 D 931281 CDS YP_005928292.1 386010015 12518619 complement(457051..459228) 1 NC_017530.1 Malate synthase G; GlcB 459228 glcB 12518619 glcB Pseudomonas putida BIRD-1 GlcB YP_005928292.1 457051 R 931281 CDS YP_005928293.1 386010016 12518620 459678..460196 1 NC_017530.1 ACT domain-containing protein 460196 12518620 PPUBIRD1_0393 Pseudomonas putida BIRD-1 ACT domain-containing protein YP_005928293.1 459678 D 931281 CDS YP_005928294.1 386010017 12518621 complement(460521..461408) 1 NC_017530.1 RarD protein, DMT superfamily transporter; protein RarD 461408 rarD 12518621 rarD Pseudomonas putida BIRD-1 protein RarD YP_005928294.1 460521 R 931281 CDS YP_005928295.1 386010018 12518622 complement(461473..462012) 1 NC_017530.1 Serine/threonine protein kinase 462012 12518622 PPUBIRD1_0395 Pseudomonas putida BIRD-1 Serine/threonine protein kinase YP_005928295.1 461473 R 931281 CDS YP_005928296.1 386010019 12518623 complement(461985..462446) 1 NC_017530.1 Serine/threonine protein kinase 462446 12518623 PPUBIRD1_0396 Pseudomonas putida BIRD-1 Serine/threonine protein kinase YP_005928296.1 461985 R 931281 CDS YP_005928297.1 386010020 12518624 complement(462605..463369) 1 NC_017530.1 ModE family transcriptional regulator 463369 12518624 PPUBIRD1_0397 Pseudomonas putida BIRD-1 ModE family transcriptional regulator YP_005928297.1 462605 R 931281 CDS YP_005928298.1 386010021 12518625 complement(463419..464150) 1 NC_017530.1 Competence protein ComF, putative 464150 12518625 PPUBIRD1_0398 Pseudomonas putida BIRD-1 Competence protein ComF, putative YP_005928298.1 463419 R 931281 CDS YP_005928299.1 386010022 12518626 464240..465298 1 NC_017530.1 Biotin synthase; protein BioB 465298 bioB 12518626 bioB Pseudomonas putida BIRD-1 protein BioB YP_005928299.1 464240 D 931281 CDS YP_005928300.1 386010023 12518627 465300..466472 1 NC_017530.1 8-amino-7-oxononanoate synthase 466472 12518627 PPUBIRD1_0400 Pseudomonas putida BIRD-1 8-amino-7-oxononanoate synthase YP_005928300.1 465300 D 931281 CDS YP_005928301.1 386010024 12518628 466465..467196 1 NC_017530.1 carboxylesterase; BioH protein 467196 bioH 12518628 bioH Pseudomonas putida BIRD-1 BioH protein YP_005928301.1 466465 D 931281 CDS YP_005928302.1 386010025 12518629 467189..468007 1 NC_017530.1 biotin biosynthesis protein BioC 468007 12518629 PPUBIRD1_0402 Pseudomonas putida BIRD-1 biotin biosynthesis protein BioC YP_005928302.1 467189 D 931281 CDS YP_005928303.1 386010026 12518630 468018..468698 1 NC_017530.1 dithiobiotin synthetase; BioD 468698 bioD 12518630 bioD Pseudomonas putida BIRD-1 BioD YP_005928303.1 468018 D 931281 CDS YP_005928304.1 386010027 12518631 468911..469207 1 NC_017530.1 hypothetical protein 469207 12518631 PPUBIRD1_0404 Pseudomonas putida BIRD-1 hypothetical protein YP_005928304.1 468911 D 931281 CDS YP_005928305.1 386010028 12518632 469496..471301 1 NC_017530.1 Acyl-CoA dehydrogenase domain-containing protein 471301 12518632 PPUBIRD1_0405 Pseudomonas putida BIRD-1 Acyl-CoA dehydrogenase domain-containing protein YP_005928305.1 469496 D 931281 CDS YP_005928306.1 386010029 12518633 471675..472958 1 NC_017530.1 Diguanylate cyclase 472958 12518633 PPUBIRD1_0406 Pseudomonas putida BIRD-1 Diguanylate cyclase YP_005928306.1 471675 D 931281 CDS YP_005928307.1 386010030 12518634 473083..474861 1 NC_017530.1 Acyl-CoA dehydrogenase domain-containing protein 474861 12518634 PPUBIRD1_0407 Pseudomonas putida BIRD-1 Acyl-CoA dehydrogenase domain-containing protein YP_005928307.1 473083 D 931281 CDS YP_005928308.1 386010031 12518635 complement(475200..476123) 1 NC_017530.1 LysR family transcriptional regulator 476123 12518635 PPUBIRD1_0408 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005928308.1 475200 R 931281 CDS YP_005928309.1 386010032 12518636 476335..477615 1 NC_017530.1 Aminotransferase class-III 477615 12518636 PPUBIRD1_0409 Pseudomonas putida BIRD-1 Aminotransferase class-III YP_005928309.1 476335 D 931281 CDS YP_005928310.1 386010033 12518637 477763..477921 1 NC_017530.1 hypothetical protein 477921 12518637 PPUBIRD1_0410 Pseudomonas putida BIRD-1 hypothetical protein YP_005928310.1 477763 D 931281 CDS YP_005928311.1 386010034 12518638 complement(477984..479807) 1 NC_017530.1 Peptidase S9 prolyl oligopeptidase 479807 12518638 PPUBIRD1_0411 Pseudomonas putida BIRD-1 Peptidase S9 prolyl oligopeptidase YP_005928311.1 477984 R 931281 CDS YP_005928312.1 386010035 12518639 complement(479773..480933) 1 NC_017530.1 coenzyme PQQ synthesis protein E 480933 12518639 PPUBIRD1_0412 Pseudomonas putida BIRD-1 coenzyme PQQ synthesis protein E YP_005928312.1 479773 R 931281 CDS YP_005928313.1 386010036 12518640 complement(480905..481180) 1 NC_017530.1 Coenzyme PQQ synthesis protein D 1; PqqD 481180 pqqD 12518640 pqqD Pseudomonas putida BIRD-1 PqqD YP_005928313.1 480905 R 931281 CDS YP_005928314.1 386010037 12518641 complement(481177..481932) 1 NC_017530.1 Pyrroloquinoline-quinone synthase; PqqC 481932 pqqC 12518641 pqqC Pseudomonas putida BIRD-1 PqqC YP_005928314.1 481177 R 931281 CDS YP_005928315.1 386010038 12518642 complement(482095..483006) 1 NC_017530.1 Coenzyme PQQ synthesis protein B; PqqB 483006 pqqB 12518642 pqqB Pseudomonas putida BIRD-1 PqqB YP_005928315.1 482095 R 931281 CDS YP_005928316.1 386010039 12518643 complement(483316..485616) 1 NC_017530.1 Coenzyme PQQ synthesis protein F; PqqF 485616 pqqF 12518643 pqqF Pseudomonas putida BIRD-1 PqqF YP_005928316.1 483316 R 931281 CDS YP_005928317.1 386010040 12518644 complement(485757..486551) 1 NC_017530.1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 486551 12518644 PPUBIRD1_0417 Pseudomonas putida BIRD-1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_005928317.1 485757 R 931281 CDS YP_005928318.1 386010041 12518645 complement(486566..488248) 1 NC_017530.1 Amine oxidase 488248 12518645 PPUBIRD1_0418 Pseudomonas putida BIRD-1 Amine oxidase YP_005928318.1 486566 R 931281 CDS YP_005928319.1 386010042 12518646 complement(488588..489049) 1 NC_017530.1 AsnC family transcriptional regulator 489049 12518646 PPUBIRD1_0419 Pseudomonas putida BIRD-1 AsnC family transcriptional regulator YP_005928319.1 488588 R 931281 CDS YP_005928320.1 386010043 12518647 489237..489791 1 NC_017530.1 hypothetical protein 489791 12518647 PPUBIRD1_0420 Pseudomonas putida BIRD-1 hypothetical protein YP_005928320.1 489237 D 931281 CDS YP_005928321.1 386010044 12518648 complement(490133..490303) 1 NC_017530.1 hypothetical protein 490303 12518648 PPUBIRD1_0422 Pseudomonas putida BIRD-1 hypothetical protein YP_005928321.1 490133 R 931281 CDS YP_005928322.1 386010045 12518650 complement(490449..494192) 1 NC_017530.1 Sensory box protein 494192 12518650 PPUBIRD1_0423 Pseudomonas putida BIRD-1 Sensory box protein YP_005928322.1 490449 R 931281 CDS YP_005928323.1 386010046 12518651 complement(494320..496170) 1 NC_017530.1 RNA polymerase sigma factor rpoD; protein RpoD 496170 rpoD 12518651 rpoD Pseudomonas putida BIRD-1 protein RpoD YP_005928323.1 494320 R 931281 CDS YP_005928324.1 386010047 12518652 complement(496238..496507) 1 NC_017530.1 DNA primase; DnaG 496507 dnaG 12518652 dnaG Pseudomonas putida BIRD-1 DnaG YP_005928324.1 496238 R 931281 CDS YP_005928325.1 386010048 12518653 complement(496543..498219) 1 NC_017530.1 DNA primase; DnaG_2 498219 dnaG_2 12518653 dnaG_2 Pseudomonas putida BIRD-1 DnaG_2 YP_005928325.1 496543 R 931281 CDS YP_005928326.1 386010049 12518654 complement(498525..498740) 1 NC_017530.1 30S ribosomal protein S21; RpsU 498740 rpsU 12518654 rpsU Pseudomonas putida BIRD-1 RpsU YP_005928326.1 498525 R 931281 CDS YP_005928327.1 386010050 12518655 498945..499970 1 NC_017530.1 Probable O-sialoglycoprotein endopeptidase; hypothetical protein 499970 gcp 12518655 gcp Pseudomonas putida BIRD-1 hypothetical protein YP_005928327.1 498945 D 931281 CDS YP_005928328.1 386010051 12518656 complement(499988..500557) 1 NC_017530.1 Glycerol-3-phosphate acyltransferase 500557 12518656 PPUBIRD1_0429 Pseudomonas putida BIRD-1 Glycerol-3-phosphate acyltransferase YP_005928328.1 499988 R 931281 CDS YP_005928329.1 386010052 12518657 500641..500988 1 NC_017530.1 dihydroneopterin aldolase; FolB 500988 folB 12518657 folB Pseudomonas putida BIRD-1 FolB YP_005928329.1 500641 D 931281 CDS YP_005928330.1 386010053 12518658 500979..501488 1 NC_017530.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 501488 12518658 PPUBIRD1_0431 Pseudomonas putida BIRD-1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_005928330.1 500979 D 931281 CDS YP_005928331.1 386010054 12518659 complement(501736..502842) 1 NC_017530.1 Multifunctional CCA protein; bifunctional; hypothetical protein 502842 cca 12518659 cca Pseudomonas putida BIRD-1 hypothetical protein YP_005928331.1 501736 R 931281 CDS YP_005928332.1 386010055 12518660 complement(502898..504466) 1 NC_017530.1 hypothetical protein 504466 12518660 PPUBIRD1_0433 Pseudomonas putida BIRD-1 hypothetical protein YP_005928332.1 502898 R 931281 CDS YP_005928333.1 386010056 12518661 complement(504463..505734) 1 NC_017530.1 hypothetical protein 505734 12518661 PPUBIRD1_0434 Pseudomonas putida BIRD-1 hypothetical protein YP_005928333.1 504463 R 931281 CDS YP_005928334.1 386010057 12518662 complement(505890..507812) 1 NC_017530.1 hypothetical protein 507812 12518662 PPUBIRD1_0435 Pseudomonas putida BIRD-1 hypothetical protein YP_005928334.1 505890 R 931281 CDS YP_005928335.1 386010058 12518663 complement(508095..508427) 1 NC_017530.1 Thiosulfate sulfurtransferase glpE; protein GlpE 508427 glpE 12518663 glpE Pseudomonas putida BIRD-1 protein GlpE YP_005928335.1 508095 R 931281 CDS YP_005928336.1 386010059 12518664 complement(508442..509308) 1 NC_017530.1 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical; ApaH 509308 apaH 12518664 apaH Pseudomonas putida BIRD-1 ApaH YP_005928336.1 508442 R 931281 CDS YP_005928337.1 386010060 12518665 complement(509308..509688) 1 NC_017530.1 Protein apaG; ApaG protein 509688 apaG 12518665 apaG Pseudomonas putida BIRD-1 ApaG protein YP_005928337.1 509308 R 931281 CDS YP_005928338.1 386010061 12518666 complement(509886..510689) 1 NC_017530.1 Ribosomal RNA small subunit methyltransferase A; KsgA 510689 ksgA 12518666 ksgA Pseudomonas putida BIRD-1 KsgA YP_005928338.1 509886 R 931281 CDS YP_005928339.1 386010062 12518667 complement(510686..511675) 1 NC_017530.1 4-hydroxythreonine-4-phosphate dehydrogenase; protein PdxA 511675 pdxA 12518667 pdxA Pseudomonas putida BIRD-1 protein PdxA YP_005928339.1 510686 R 931281 CDS YP_005928340.1 386010063 12518668 complement(511672..512991) 1 NC_017530.1 Chaperone surA 512991 12518668 PPUBIRD1_0441 Pseudomonas putida BIRD-1 Chaperone surA YP_005928340.1 511672 R 931281 CDS YP_005928341.1 386010064 12518669 complement(512972..515779) 1 NC_017530.1 LPS-assembly protein lptD 515779 12518669 PPUBIRD1_0442 Pseudomonas putida BIRD-1 LPS-assembly protein lptD YP_005928341.1 512972 R 931281 CDS YP_005928342.1 386010065 12518670 515910..516929 1 NC_017530.1 Aminoglycoside phosphotransferase 516929 12518670 PPUBIRD1_0443 Pseudomonas putida BIRD-1 Aminoglycoside phosphotransferase YP_005928342.1 515910 D 931281 CDS YP_005928343.1 386010066 12518671 516926..517597 1 NC_017530.1 nucleotidyltransferase 517597 12518671 PPUBIRD1_0444 Pseudomonas putida BIRD-1 nucleotidyltransferase YP_005928343.1 516926 D 931281 CDS YP_005928344.1 386010067 12518672 517599..518366 1 NC_017530.1 heat shock protein DnaJ domain protein; DjlA 518366 djlA 12518672 djlA Pseudomonas putida BIRD-1 DjlA YP_005928344.1 517599 D 931281 CDS YP_005928345.1 386010068 12518673 complement(518393..519391) 1 NC_017530.1 hypothetical protein 519391 12518673 PPUBIRD1_0446 Pseudomonas putida BIRD-1 hypothetical protein YP_005928345.1 518393 R 931281 CDS YP_005928346.1 386010069 12518674 519496..521874 1 NC_017530.1 PAS/PAC sensor signal transduction histidine kinase 521874 12518674 PPUBIRD1_0447 Pseudomonas putida BIRD-1 PAS/PAC sensor signal transduction histidine kinase YP_005928346.1 519496 D 931281 CDS YP_005928347.1 386010070 12518675 521885..522514 1 NC_017530.1 LuxR family two component transcriptional regulator; UhpA family transcriptional regulator 522514 uhpA 12518675 uhpA Pseudomonas putida BIRD-1 UhpA family transcriptional regulator YP_005928347.1 521885 D 931281 CDS YP_005928348.1 386010071 12518676 522810..523934 1 NC_017530.1 Spermidine/putrescine ABC transporter ATPase 523934 12518676 PPUBIRD1_0449 Pseudomonas putida BIRD-1 Spermidine/putrescine ABC transporter ATPase YP_005928348.1 522810 D 931281 CDS YP_005928349.1 386010072 12518677 523975..525009 1 NC_017530.1 Polyamine ABC transporter, periplasmic polyamine-binding protein 525009 12518677 PPUBIRD1_0450 Pseudomonas putida BIRD-1 Polyamine ABC transporter, periplasmic polyamine-binding protein YP_005928349.1 523975 D 931281 CDS YP_005928350.1 386010073 12518678 525070..526317 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 526317 12518678 PPUBIRD1_0451 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005928350.1 525070 D 931281 CDS YP_005928351.1 386010074 12518679 526328..527155 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 527155 12518679 PPUBIRD1_0452 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005928351.1 526328 D 931281 CDS YP_005928352.1 386010075 12518680 527307..527981 1 NC_017530.1 ribulose-phosphate 3-epimerase; hypothetical protein 527981 rpe 12518680 rpe Pseudomonas putida BIRD-1 hypothetical protein YP_005928352.1 527307 D 931281 CDS YP_005928353.1 386010076 12518681 527978..528796 1 NC_017530.1 phosphoglycolate phosphatase 528796 12518681 PPUBIRD1_0454 Pseudomonas putida BIRD-1 phosphoglycolate phosphatase YP_005928353.1 527978 D 931281 CDS YP_005928354.1 386010077 12518682 528866..530347 1 NC_017530.1 Anthranilate synthase component 1 530347 12518682 PPUBIRD1_0455 Pseudomonas putida BIRD-1 Anthranilate synthase component 1 YP_005928354.1 528866 D 931281 CDS YP_005928355.1 386010078 12518683 complement(530620..532509) 1 NC_017530.1 hypothetical protein 532509 12518683 PPUBIRD1_0456 Pseudomonas putida BIRD-1 hypothetical protein YP_005928355.1 530620 R 931281 CDS YP_005928356.1 386010079 12518684 532877..533470 1 NC_017530.1 anthranilate synthase component II; protein TrpG 533470 trpG 12518684 trpG Pseudomonas putida BIRD-1 protein TrpG YP_005928356.1 532877 D 931281 CDS YP_005928357.1 386010080 12518685 533480..534529 1 NC_017530.1 Anthranilate phosphoribosyltransferase; TrpD 534529 trpD 12518685 trpD Pseudomonas putida BIRD-1 TrpD YP_005928357.1 533480 D 931281 CDS YP_005928358.1 386010081 12518686 534526..535359 1 NC_017530.1 Indole-3-glycerol phosphate synthase; TrpC 535359 trpC 12518686 trpC Pseudomonas putida BIRD-1 TrpC YP_005928358.1 534526 D 931281 CDS YP_005928359.1 386010082 12518687 535507..536211 1 NC_017530.1 hypothetical protein 536211 12518687 PPUBIRD1_0460 Pseudomonas putida BIRD-1 hypothetical protein YP_005928359.1 535507 D 931281 CDS YP_005928360.1 386010083 12518688 complement(536208..536879) 1 NC_017530.1 CAMP-regulatory protein 536879 12518688 PPUBIRD1_0461 Pseudomonas putida BIRD-1 CAMP-regulatory protein YP_005928360.1 536208 R 931281 CDS YP_005928361.1 386010084 12518689 537044..537466 1 NC_017530.1 OsmC family protein 537466 12518689 PPUBIRD1_0462 Pseudomonas putida BIRD-1 OsmC family protein YP_005928361.1 537044 D 931281 CDS YP_005928362.1 386010085 12518690 complement(537543..538583) 1 NC_017530.1 hypothetical protein 538583 12518690 PPUBIRD1_0463 Pseudomonas putida BIRD-1 hypothetical protein YP_005928362.1 537543 R 931281 CDS YP_005928363.1 386010086 12518691 complement(538594..539241) 1 NC_017530.1 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 539241 12518691 PPUBIRD1_0464 Pseudomonas putida BIRD-1 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_005928363.1 538594 R 931281 CDS YP_005928364.1 386010087 12518692 complement(539307..539645) 1 NC_017530.1 Histidine triad (HIT) protein 539645 12518692 PPUBIRD1_0465 Pseudomonas putida BIRD-1 Histidine triad (HIT) protein YP_005928364.1 539307 R 931281 CDS YP_005928365.1 386010088 12518693 complement(539709..540491) 1 NC_017530.1 Short chain dehydrogenase/reductase family oxidoreductase 540491 12518693 PPUBIRD1_0466 Pseudomonas putida BIRD-1 Short chain dehydrogenase/reductase family oxidoreductase YP_005928365.1 539709 R 931281 CDS YP_005928366.1 386010089 12518694 complement(540559..541515) 1 NC_017530.1 hypothetical protein 541515 12518694 PPUBIRD1_0467 Pseudomonas putida BIRD-1 hypothetical protein YP_005928366.1 540559 R 931281 CDS YP_005928367.1 386010090 12518695 complement(541544..541969) 1 NC_017530.1 hypothetical protein 541969 12518695 PPUBIRD1_0468 Pseudomonas putida BIRD-1 hypothetical protein YP_005928367.1 541544 R 931281 CDS YP_005928368.1 386010091 12518696 542112..543146 1 NC_017530.1 N-acetyl-gamma-glutamyl-phosphate reductase; protein ArgC 543146 argC 12518696 argC Pseudomonas putida BIRD-1 protein ArgC YP_005928368.1 542112 D 931281 CDS YP_005928369.1 386010092 12518697 543293..543643 1 NC_017530.1 Iron-sulfur cluster insertion protein erpA 543643 12518697 PPUBIRD1_0470 Pseudomonas putida BIRD-1 Iron-sulfur cluster insertion protein erpA YP_005928369.1 543293 D 931281 CDS YP_005928370.1 386010093 12518698 complement(543703..544794) 1 NC_017530.1 anhydro-N-acetylmuramic acid kinase 544794 12518698 PPUBIRD1_0471 Pseudomonas putida BIRD-1 anhydro-N-acetylmuramic acid kinase YP_005928370.1 543703 R 931281 CDS YP_005928371.1 386010094 12518699 complement(544798..546168) 1 NC_017530.1 M24/M37 family peptidase 546168 12518699 PPUBIRD1_0472 Pseudomonas putida BIRD-1 M24/M37 family peptidase YP_005928371.1 544798 R 931281 CDS YP_005928372.1 386010095 12518700 546433..547632 1 NC_017530.1 Tyrosyl-tRNA synthetase; TyrS 547632 tyrS 12518700 tyrS Pseudomonas putida BIRD-1 TyrS YP_005928372.1 546433 D 931281 CDS YP_005928373.1 386010096 12518704 553359..554318 1 NC_017530.1 biotin--protein ligase; bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor 554318 birA 12518704 birA Pseudomonas putida BIRD-1 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor YP_005928373.1 553359 D 931281 CDS YP_005928374.1 386010097 12518705 554308..555057 1 NC_017530.1 Type III pantothenate kinase 555057 12518705 PPUBIRD1_0475 Pseudomonas putida BIRD-1 Type III pantothenate kinase YP_005928374.1 554308 D 931281 CDS YP_005928375.1 386010098 12518706 555065..555490 1 NC_017530.1 hypothetical protein 555490 12518706 PPUBIRD1_0476 Pseudomonas putida BIRD-1 hypothetical protein YP_005928375.1 555065 D 931281 CDS YP_005928376.1 386010099 12518710 556008..557201 1 NC_017530.1 Elongation factor Tu-A; hypothetical protein 557201 tuf 12518710 tuf Pseudomonas putida BIRD-1 hypothetical protein YP_005928376.1 556008 D 931281 CDS YP_005928377.1 386010100 12518712 557376..557744 1 NC_017530.1 preprotein translocase subunit SecE; protein SecE 557744 secE 12518712 secE Pseudomonas putida BIRD-1 protein SecE YP_005928377.1 557376 D 931281 CDS YP_005928378.1 386010101 12518713 557808..558287 1 NC_017530.1 transcription antitermination protein NusG; protein NusG 558287 nusG 12518713 nusG Pseudomonas putida BIRD-1 protein NusG YP_005928378.1 557808 D 931281 CDS YP_005928379.1 386010102 12518714 558512..558838 1 NC_017530.1 50S ribosomal protein L11; protein RplK 558838 rplK 12518714 rplK Pseudomonas putida BIRD-1 protein RplK YP_005928379.1 558512 D 931281 CDS YP_005928380.1 386010103 12518715 558838..559533 1 NC_017530.1 50S ribosomal protein L1; protein RplA 559533 rplA 12518715 rplA Pseudomonas putida BIRD-1 protein RplA YP_005928380.1 558838 D 931281 CDS YP_005928381.1 386010104 12518716 559731..560231 1 NC_017530.1 50S ribosomal protein L10; protein RplJ 560231 rplJ 12518716 rplJ Pseudomonas putida BIRD-1 protein RplJ YP_005928381.1 559731 D 931281 CDS YP_005928382.1 386010105 12518717 560308..560673 1 NC_017530.1 50S ribosomal protein L7/L12; protein RplL 560673 rplL 12518717 rplL Pseudomonas putida BIRD-1 protein RplL YP_005928382.1 560308 D 931281 CDS YP_005928383.1 386010106 12518718 560894..564967 1 NC_017530.1 DNA-directed RNA polymerase subunit beta; protein RpoB 564967 rpoB 12518718 rpoB Pseudomonas putida BIRD-1 protein RpoB YP_005928383.1 560894 D 931281 CDS YP_005928384.1 386010107 12518719 565032..569231 1 NC_017530.1 DNA-directed RNA polymerase subunit beta'; protein RpoC 569231 rpoC 12518719 rpoC Pseudomonas putida BIRD-1 protein RpoC YP_005928384.1 565032 D 931281 CDS YP_005928385.1 386010108 12518720 569443..569814 1 NC_017530.1 30S ribosomal protein S12; protein RpsL 569814 rpsL 12518720 rpsL Pseudomonas putida BIRD-1 protein RpsL YP_005928385.1 569443 D 931281 CDS YP_005928386.1 386010109 12518721 570011..570391 1 NC_017530.1 30S ribosomal protein S7; protein RpsG 570391 rpsG 12518721 rpsG Pseudomonas putida BIRD-1 protein RpsG YP_005928386.1 570011 D 931281 CDS YP_005928387.1 386010110 12518722 570422..572569 1 NC_017530.1 Elongation factor G 1; FusA protein 572569 fusA 12518722 fusA Pseudomonas putida BIRD-1 FusA protein YP_005928387.1 570422 D 931281 CDS YP_005928388.1 386010111 12518723 572597..573790 1 NC_017530.1 Elongation factor Tu-B; Tuf_2 573790 tuf_2 12518723 tuf_2 Pseudomonas putida BIRD-1 Tuf_2 YP_005928388.1 572597 D 931281 CDS YP_005928389.1 386010112 12518724 573932..574243 1 NC_017530.1 30S ribosomal protein S10; protein RpsJ 574243 rpsJ 12518724 rpsJ Pseudomonas putida BIRD-1 protein RpsJ YP_005928389.1 573932 D 931281 CDS YP_005928390.1 386010113 12518725 574324..574959 1 NC_017530.1 ribosomal protein L3; RplC 574959 rplC 12518725 rplC Pseudomonas putida BIRD-1 RplC YP_005928390.1 574324 D 931281 CDS YP_005928391.1 386010114 12518726 574972..575574 1 NC_017530.1 50S ribosomal protein L4; protein RplD 575574 rplD 12518726 rplD Pseudomonas putida BIRD-1 protein RplD YP_005928391.1 574972 D 931281 CDS YP_005928392.1 386010115 12518727 575571..575870 1 NC_017530.1 50S ribosomal protein L23; protein RplW 575870 rplW 12518727 rplW Pseudomonas putida BIRD-1 protein RplW YP_005928392.1 575571 D 931281 CDS YP_005928393.1 386010116 12518728 575885..576709 1 NC_017530.1 50S ribosomal protein L2; protein RplB 576709 rplB 12518728 rplB Pseudomonas putida BIRD-1 protein RplB YP_005928393.1 575885 D 931281 CDS YP_005928394.1 386010117 12518729 576726..577001 1 NC_017530.1 30S ribosomal protein S19; protein RpsS 577001 rpsS 12518729 rpsS Pseudomonas putida BIRD-1 protein RpsS YP_005928394.1 576726 D 931281 CDS YP_005928395.1 386010118 12518730 577097..577345 1 NC_017530.1 50S ribosomal protein L22; protein RplV 577345 rplV 12518730 rplV Pseudomonas putida BIRD-1 protein RplV YP_005928395.1 577097 D 931281 CDS YP_005928396.1 386010119 12518731 577359..578045 1 NC_017530.1 30S ribosomal protein S3; protein RpsC 578045 rpsC 12518731 rpsC Pseudomonas putida BIRD-1 protein RpsC YP_005928396.1 577359 D 931281 CDS YP_005928397.1 386010120 12518732 578058..578471 1 NC_017530.1 50S ribosomal protein L16; protein RplP 578471 rplP 12518732 rplP Pseudomonas putida BIRD-1 protein RplP YP_005928397.1 578058 D 931281 CDS YP_005928398.1 386010121 12518733 578471..578662 1 NC_017530.1 50S ribosomal protein L29; protein RpmC 578662 rpmC 12518733 rpmC Pseudomonas putida BIRD-1 protein RpmC YP_005928398.1 578471 D 931281 CDS YP_005928399.1 386010122 12518734 578665..578931 1 NC_017530.1 30S ribosomal protein S17; protein RpsQ 578931 rpsQ 12518734 rpsQ Pseudomonas putida BIRD-1 protein RpsQ YP_005928399.1 578665 D 931281 CDS YP_005928400.1 386010123 12518735 578955..579323 1 NC_017530.1 50S ribosomal protein L14; RplN 579323 rplN 12518735 rplN Pseudomonas putida BIRD-1 RplN YP_005928400.1 578955 D 931281 CDS YP_005928401.1 386010124 12518736 579335..579649 1 NC_017530.1 50S ribosomal protein L24; protein RplX 579649 rplX 12518736 rplX Pseudomonas putida BIRD-1 protein RplX YP_005928401.1 579335 D 931281 CDS YP_005928402.1 386010125 12518737 579670..580209 1 NC_017530.1 50S ribosomal protein L5; protein RplE 580209 rplE 12518737 rplE Pseudomonas putida BIRD-1 protein RplE YP_005928402.1 579670 D 931281 CDS YP_005928403.1 386010126 12518738 580223..580528 1 NC_017530.1 30S ribosomal protein S14; protein RpsN 580528 rpsN 12518738 rpsN Pseudomonas putida BIRD-1 protein RpsN YP_005928403.1 580223 D 931281 CDS YP_005928404.1 386010127 12518739 580737..581129 1 NC_017530.1 30S ribosomal protein S8; protein RpsH 581129 rpsH 12518739 rpsH Pseudomonas putida BIRD-1 protein RpsH YP_005928404.1 580737 D 931281 CDS YP_005928405.1 386010128 12518740 581142..581675 1 NC_017530.1 50S ribosomal protein L6; protein RplF 581675 rplF 12518740 rplF Pseudomonas putida BIRD-1 protein RplF YP_005928405.1 581142 D 931281 CDS YP_005928406.1 386010129 12518741 581686..582036 1 NC_017530.1 50S ribosomal protein L18; protein RplR 582036 rplR 12518741 rplR Pseudomonas putida BIRD-1 protein RplR YP_005928406.1 581686 D 931281 CDS YP_005928407.1 386010130 12518742 582040..582540 1 NC_017530.1 30S ribosomal protein S5; protein RpsE 582540 rpsE 12518742 rpsE Pseudomonas putida BIRD-1 protein RpsE YP_005928407.1 582040 D 931281 CDS YP_005928408.1 386010131 12518743 582543..582719 1 NC_017530.1 50S ribosomal protein L30; protein RpmD 582719 rpmD 12518743 rpmD Pseudomonas putida BIRD-1 protein RpmD YP_005928408.1 582543 D 931281 CDS YP_005928409.1 386010132 12518744 582723..583157 1 NC_017530.1 50S ribosomal protein L15; protein RplO 583157 rplO 12518744 rplO Pseudomonas putida BIRD-1 protein RplO YP_005928409.1 582723 D 931281 CDS YP_005928410.1 386010133 12518745 583200..584489 1 NC_017530.1 Preprotein translocase subunit secY; SecY protein 584489 secY 12518745 secY Pseudomonas putida BIRD-1 SecY protein YP_005928410.1 583200 D 931281 CDS YP_005928411.1 386010134 12518746 584518..584634 1 NC_017530.1 hypothetical protein 584634 12518746 PPUBIRD1_0512 Pseudomonas putida BIRD-1 hypothetical protein YP_005928411.1 584518 D 931281 CDS YP_005928412.1 386010135 12518747 584766..585122 1 NC_017530.1 30S ribosomal protein S13; RpsM 585122 rpsM 12518747 rpsM Pseudomonas putida BIRD-1 RpsM YP_005928412.1 584766 D 931281 CDS YP_005928413.1 386010136 12518748 585141..585530 1 NC_017530.1 30S ribosomal protein S11 585530 12518748 PPUBIRD1_0514 Pseudomonas putida BIRD-1 30S ribosomal protein S11 YP_005928413.1 585141 D 931281 CDS YP_005928414.1 386010137 12518749 585546..586166 1 NC_017530.1 30S ribosomal protein S4; protein RpsD 586166 rpsD 12518749 rpsD Pseudomonas putida BIRD-1 protein RpsD YP_005928414.1 585546 D 931281 CDS YP_005928415.1 386010138 12518750 586189..587190 1 NC_017530.1 DNA-directed RNA polymerase subunit alpha; protein RpoA 587190 rpoA 12518750 rpoA Pseudomonas putida BIRD-1 protein RpoA YP_005928415.1 586189 D 931281 CDS YP_005928416.1 386010139 12518751 587290..587619 1 NC_017530.1 50S ribosomal protein L17; protein RplQ 587619 rplQ 12518751 rplQ Pseudomonas putida BIRD-1 protein RplQ YP_005928416.1 587290 D 931281 CDS YP_005928417.1 386010140 12518752 587792..589231 1 NC_017530.1 Catalase; protein KatA 589231 katA 12518752 katA Pseudomonas putida BIRD-1 protein KatA YP_005928417.1 587792 D 931281 CDS YP_005928418.1 386010141 12518753 589395..589859 1 NC_017530.1 Bacterioferritin 589859 12518753 PPUBIRD1_0519 Pseudomonas putida BIRD-1 Bacterioferritin YP_005928418.1 589395 D 931281 CDS YP_005928419.1 386010142 12518754 complement(589932..592766) 1 NC_017530.1 UvrABC system protein A; UvrA protein 592766 uvrA 12518754 uvrA Pseudomonas putida BIRD-1 UvrA protein YP_005928419.1 589932 R 931281 CDS YP_005928420.1 386010143 12518755 592896..594290 1 NC_017530.1 Major facilitator transporter 594290 12518755 PPUBIRD1_0521 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005928420.1 592896 D 931281 CDS YP_005928421.1 386010144 12518756 594300..594845 1 NC_017530.1 Single-stranded DNA-binding protein; Ssb 594845 ssb 12518756 ssb Pseudomonas putida BIRD-1 Ssb YP_005928421.1 594300 D 931281 CDS YP_005928422.1 386010145 12518757 complement(594934..596316) 1 NC_017530.1 GntR family transcriptional regulator 596316 12518757 PPUBIRD1_0523 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005928422.1 594934 R 931281 CDS YP_005928423.1 386010146 12518758 596517..597302 1 NC_017530.1 hypothetical protein 597302 12518758 PPUBIRD1_0525 Pseudomonas putida BIRD-1 hypothetical protein YP_005928423.1 596517 D 931281 CDS YP_005928424.1 386010147 12518759 597324..598085 1 NC_017530.1 Short chain dehydrogenase/reductase family oxidoreductase 598085 12518759 PPUBIRD1_0526 Pseudomonas putida BIRD-1 Short chain dehydrogenase/reductase family oxidoreductase YP_005928424.1 597324 D 931281 CDS YP_005928425.1 386010148 12518760 598233..598823 1 NC_017530.1 Molybdopterin oxidoreductase Fe4S4 region 598823 12518760 PPUBIRD1_0527 Pseudomonas putida BIRD-1 Molybdopterin oxidoreductase Fe4S4 region YP_005928425.1 598233 D 931281 CDS YP_005928426.1 386010149 12518761 598872..601301 1 NC_017530.1 Formate dehydrogenase-O major subunit 601301 12518761 PPUBIRD1_0528 Pseudomonas putida BIRD-1 Formate dehydrogenase-O major subunit YP_005928426.1 598872 D 931281 CDS YP_005928427.1 386010150 12518762 601301..602251 1 NC_017530.1 Formate dehydrogenase subunit beta 602251 12518762 PPUBIRD1_0529 Pseudomonas putida BIRD-1 Formate dehydrogenase subunit beta YP_005928427.1 601301 D 931281 CDS YP_005928428.1 386010151 12518763 602248..602904 1 NC_017530.1 Formate dehydrogenase subunit gamma 602904 12518763 PPUBIRD1_0530 Pseudomonas putida BIRD-1 Formate dehydrogenase subunit gamma YP_005928428.1 602248 D 931281 CDS YP_005928429.1 386010152 12518764 602909..603835 1 NC_017530.1 Formate dehydrogenase accessory protein FdhE 603835 12518764 PPUBIRD1_0531 Pseudomonas putida BIRD-1 Formate dehydrogenase accessory protein FdhE YP_005928429.1 602909 D 931281 CDS YP_005928430.1 386010153 12518765 603975..605402 1 NC_017530.1 L-seryl-tRNA(Sec) selenium transferase; protein SelA 605402 selA 12518765 selA Pseudomonas putida BIRD-1 protein SelA YP_005928430.1 603975 D 931281 CDS YP_005928431.1 386010154 12518766 605399..607321 1 NC_017530.1 selenocysteine-specific translation elongation factor; protein SelB 607321 selB 12518766 selB Pseudomonas putida BIRD-1 protein SelB YP_005928431.1 605399 D 931281 CDS YP_005928432.1 386010155 12518767 complement(607515..608504) 1 NC_017530.1 asparaginase; AnsB 608504 ansB 12518767 ansB Pseudomonas putida BIRD-1 AnsB YP_005928432.1 607515 R 931281 CDS YP_005928433.1 386010156 12518768 complement(608577..610019) 1 NC_017530.1 Amino acid carrier protein 610019 12518768 PPUBIRD1_0535 Pseudomonas putida BIRD-1 Amino acid carrier protein YP_005928433.1 608577 R 931281 CDS YP_005928434.1 386010157 12518769 610198..611007 1 NC_017530.1 Cro/CI family transcriptional regulator 611007 12518769 PPUBIRD1_0537 Pseudomonas putida BIRD-1 Cro/CI family transcriptional regulator YP_005928434.1 610198 D 931281 CDS YP_005928435.1 386010158 12518770 complement(611019..611864) 1 NC_017530.1 hypothetical protein 611864 12518770 PPUBIRD1_0538 Pseudomonas putida BIRD-1 hypothetical protein YP_005928435.1 611019 R 931281 CDS YP_005928436.1 386010159 12518771 complement(611873..612664) 1 NC_017530.1 hypothetical protein 612664 12518771 PPUBIRD1_0539 Pseudomonas putida BIRD-1 hypothetical protein YP_005928436.1 611873 R 931281 CDS YP_005928437.1 386010160 12518772 complement(612682..613722) 1 NC_017530.1 hypothetical protein 613722 12518772 PPUBIRD1_0540 Pseudomonas putida BIRD-1 hypothetical protein YP_005928437.1 612682 R 931281 CDS YP_005928438.1 386010161 12518773 613996..614865 1 NC_017530.1 DTDP-4-dehydrorhamnose reductase 614865 12518773 PPUBIRD1_0541 Pseudomonas putida BIRD-1 DTDP-4-dehydrorhamnose reductase YP_005928438.1 613996 D 931281 CDS YP_005928439.1 386010162 12518774 614858..615790 1 NC_017530.1 NAD-dependent epimerase/dehydratase 615790 12518774 PPUBIRD1_0542 Pseudomonas putida BIRD-1 NAD-dependent epimerase/dehydratase YP_005928439.1 614858 D 931281 CDS YP_005928440.1 386010163 12518775 complement(615821..616264) 1 NC_017530.1 HxlR family transcriptional regulator 616264 12518775 PPUBIRD1_0543 Pseudomonas putida BIRD-1 HxlR family transcriptional regulator YP_005928440.1 615821 R 931281 CDS YP_005928441.1 386010164 12518776 616368..617573 1 NC_017530.1 Major facilitator family transporter 617573 12518776 PPUBIRD1_0544 Pseudomonas putida BIRD-1 Major facilitator family transporter YP_005928441.1 616368 D 931281 CDS YP_005928442.1 386010165 12518777 complement(617561..618244) 1 NC_017530.1 OmpW family protein; OprG 618244 oprG 12518777 oprG Pseudomonas putida BIRD-1 OprG YP_005928442.1 617561 R 931281 CDS YP_005928443.1 386010166 12518778 complement(618354..618866) 1 NC_017530.1 Putative lipoprotein 618866 12518778 PPUBIRD1_0546 Pseudomonas putida BIRD-1 Putative lipoprotein YP_005928443.1 618354 R 931281 CDS YP_005928444.1 386010167 12518779 complement(618993..620258) 1 NC_017530.1 hypothetical protein 620258 12518779 PPUBIRD1_0547 Pseudomonas putida BIRD-1 hypothetical protein YP_005928444.1 618993 R 931281 CDS YP_005928445.1 386010168 12518780 complement(620258..620968) 1 NC_017530.1 Efflux ABC transporter ATP-binding protein 620968 12518780 PPUBIRD1_0548 Pseudomonas putida BIRD-1 Efflux ABC transporter ATP-binding protein YP_005928445.1 620258 R 931281 CDS YP_005928446.1 386010169 12518781 complement(620969..621550) 1 NC_017530.1 hypothetical protein 621550 12518781 PPUBIRD1_0549 Pseudomonas putida BIRD-1 hypothetical protein YP_005928446.1 620969 R 931281 CDS YP_005928447.1 386010170 12518782 621681..622025 1 NC_017530.1 hypothetical protein 622025 12518782 PPUBIRD1_0550 Pseudomonas putida BIRD-1 hypothetical protein YP_005928447.1 621681 D 931281 CDS YP_005928448.1 386010171 12518783 complement(622343..623215) 1 NC_017530.1 Thioredoxin 623215 12518783 PPUBIRD1_0551 Pseudomonas putida BIRD-1 Thioredoxin YP_005928448.1 622343 R 931281 CDS YP_005928449.1 386010172 12518784 complement(623247..623903) 1 NC_017530.1 type 12 methyltransferase 623903 12518784 PPUBIRD1_0552 Pseudomonas putida BIRD-1 type 12 methyltransferase YP_005928449.1 623247 R 931281 CDS YP_005928450.1 386010173 12518785 complement(623907..624353) 1 NC_017530.1 hypothetical protein 624353 12518785 PPUBIRD1_0553 Pseudomonas putida BIRD-1 hypothetical protein YP_005928450.1 623907 R 931281 CDS YP_005928451.1 386010174 12518786 624445..624924 1 NC_017530.1 ATP cone domain protein 624924 12518786 PPUBIRD1_0554 Pseudomonas putida BIRD-1 ATP cone domain protein YP_005928451.1 624445 D 931281 CDS YP_005928452.1 386010175 12518787 624927..626057 1 NC_017530.1 riboflavin biosynthesis protein RibD; bifunctional; protein RibD 626057 ribD 12518787 ribD Pseudomonas putida BIRD-1 protein RibD YP_005928452.1 624927 D 931281 CDS YP_005928453.1 386010176 12518788 626100..626765 1 NC_017530.1 Riboflavin synthase subunit alpha 626765 12518788 PPUBIRD1_0556 Pseudomonas putida BIRD-1 Riboflavin synthase subunit alpha YP_005928453.1 626100 D 931281 CDS YP_005928454.1 386010177 12518789 626784..627875 1 NC_017530.1 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; protein RibBA 627875 ribBA 12518789 ribBA Pseudomonas putida BIRD-1 protein RibBA YP_005928454.1 626784 D 931281 CDS YP_005928455.1 386010178 12518790 627967..628443 1 NC_017530.1 6,7-dimethyl-8-ribityllumazine synthase; protein RibH 628443 ribH 12518790 ribH Pseudomonas putida BIRD-1 protein RibH YP_005928455.1 627967 D 931281 CDS YP_005928456.1 386010179 12518791 628440..628940 1 NC_017530.1 N utilization substance protein B homolog; protein NusB 628940 nusB 12518791 nusB Pseudomonas putida BIRD-1 protein NusB YP_005928456.1 628440 D 931281 CDS YP_005928457.1 386010180 12518792 628959..629927 1 NC_017530.1 thiamine monophosphate kinase; ThiL 629927 thiL 12518792 thiL Pseudomonas putida BIRD-1 ThiL YP_005928457.1 628959 D 931281 CDS YP_005928458.1 386010181 12518793 629924..630427 1 NC_017530.1 phosphatidylglycerophosphatase A; protein PgpA 630427 pgpA 12518793 pgpA Pseudomonas putida BIRD-1 protein PgpA YP_005928458.1 629924 D 931281 CDS YP_005928459.1 386010182 12518794 630444..631187 1 NC_017530.1 hypothetical protein 631187 12518794 PPUBIRD1_0562 Pseudomonas putida BIRD-1 hypothetical protein YP_005928459.1 630444 D 931281 CDS YP_005928460.1 386010183 12518795 631368..631985 1 NC_017530.1 GTP cyclohydrolase-2; RibA 631985 ribA 12518795 ribA Pseudomonas putida BIRD-1 RibA YP_005928460.1 631368 D 931281 CDS YP_005928461.1 386010184 12518796 631982..632401 1 NC_017530.1 hypothetical protein 632401 12518796 PPUBIRD1_0564 Pseudomonas putida BIRD-1 hypothetical protein YP_005928461.1 631982 D 931281 CDS YP_005928462.1 386010185 12518797 632488..633213 1 NC_017530.1 Periplasmic binding protein 633213 12518797 PPUBIRD1_0565 Pseudomonas putida BIRD-1 Periplasmic binding protein YP_005928462.1 632488 D 931281 CDS YP_005928463.1 386010186 12518798 complement(633191..635074) 1 NC_017530.1 TonB-dependent receptor, plug 635074 12518798 PPUBIRD1_0566 Pseudomonas putida BIRD-1 TonB-dependent receptor, plug YP_005928463.1 633191 R 931281 CDS YP_005928464.1 386010187 12518799 complement(635605..637500) 1 NC_017530.1 1-deoxy-D-xylulose-5-phosphate synthase; hypothetical protein 637500 dxs 12518799 dxs Pseudomonas putida BIRD-1 hypothetical protein YP_005928464.1 635605 R 931281 CDS YP_005928465.1 386010188 12518800 complement(637678..638565) 1 NC_017530.1 polyprenyl synthetase; IspA protein 638565 ispA 12518800 ispA Pseudomonas putida BIRD-1 IspA protein YP_005928465.1 637678 R 931281 CDS YP_005928466.1 386010189 12518801 complement(638562..638804) 1 NC_017530.1 Exodeoxyribonuclease VII small subunit 638804 12518801 PPUBIRD1_0569 Pseudomonas putida BIRD-1 Exodeoxyribonuclease VII small subunit YP_005928466.1 638562 R 931281 CDS YP_005928467.1 386010190 12518802 complement(638966..639616) 1 NC_017530.1 3,4-dihydroxy-2-butanone 4-phosphate synthase; protein RibB 639616 ribB 12518802 ribB Pseudomonas putida BIRD-1 protein RibB YP_005928467.1 638966 R 931281 CDS YP_005928468.1 386010191 12518803 639988..640968 1 NC_017530.1 Zeta toxin family protein 640968 12518803 PPUBIRD1_0571 Pseudomonas putida BIRD-1 Zeta toxin family protein YP_005928468.1 639988 D 931281 CDS YP_005928469.1 386010192 12518804 complement(640990..641883) 1 NC_017530.1 Putative esterase 641883 12518804 PPUBIRD1_0572 Pseudomonas putida BIRD-1 Putative esterase YP_005928469.1 640990 R 931281 CDS YP_005928470.1 386010193 12518805 complement(641984..643312) 1 NC_017530.1 sensor protein PfeS; PfeS 643312 pfeS 12518805 pfeS Pseudomonas putida BIRD-1 PfeS YP_005928470.1 641984 R 931281 CDS YP_005928471.1 386010194 12518806 complement(643312..644004) 1 NC_017530.1 Two component transcriptional regulator 644004 12518806 PPUBIRD1_0574 Pseudomonas putida BIRD-1 Two component transcriptional regulator YP_005928471.1 643312 R 931281 CDS YP_005928472.1 386010195 12518807 644186..646363 1 NC_017530.1 TonB-dependent siderophore receptor 646363 12518807 PPUBIRD1_0575 Pseudomonas putida BIRD-1 TonB-dependent siderophore receptor YP_005928472.1 644186 D 931281 CDS YP_005928473.1 386010196 12518808 complement(646540..647004) 1 NC_017530.1 hypothetical protein 647004 12518808 PPUBIRD1_0576 Pseudomonas putida BIRD-1 hypothetical protein YP_005928473.1 646540 R 931281 CDS YP_005928474.1 386010197 12518809 647635..648729 1 NC_017530.1 Phage integrase 648729 12518809 PPUBIRD1_0577 Pseudomonas putida BIRD-1 Phage integrase YP_005928474.1 647635 D 931281 CDS YP_005928475.1 386010198 12518810 650601..650858 1 NC_017530.1 Resolvase-like protein 650858 12518810 PPUBIRD1_0578 Pseudomonas putida BIRD-1 Resolvase-like protein YP_005928475.1 650601 D 931281 CDS YP_005928476.1 386010199 12518811 650855..651508 1 NC_017530.1 hypothetical protein 651508 12518811 PPUBIRD1_0579 Pseudomonas putida BIRD-1 hypothetical protein YP_005928476.1 650855 D 931281 CDS YP_005928477.1 386010200 12518812 651963..652484 1 NC_017530.1 hypothetical protein 652484 12518812 PPUBIRD1_0580 Pseudomonas putida BIRD-1 hypothetical protein YP_005928477.1 651963 D 931281 CDS YP_005928478.1 386010201 12518813 complement(652658..655072) 1 NC_017530.1 hypothetical protein 655072 12518813 PPUBIRD1_0581 Pseudomonas putida BIRD-1 hypothetical protein YP_005928478.1 652658 R 931281 CDS YP_005928479.1 386010202 12518814 complement(655069..655998) 1 NC_017530.1 hypothetical protein 655998 12518814 PPUBIRD1_0582 Pseudomonas putida BIRD-1 hypothetical protein YP_005928479.1 655069 R 931281 CDS YP_005928480.1 386010203 12518815 complement(656269..656673) 1 NC_017530.1 hypothetical protein 656673 12518815 PPUBIRD1_0583 Pseudomonas putida BIRD-1 hypothetical protein YP_005928480.1 656269 R 931281 CDS YP_005928481.1 386010204 12518816 complement(657134..659215) 1 NC_017530.1 hypothetical protein 659215 12518816 PPUBIRD1_0585 Pseudomonas putida BIRD-1 hypothetical protein YP_005928481.1 657134 R 931281 CDS YP_005928482.1 386010205 12518817 complement(659623..660324) 1 NC_017530.1 Transcriptional regulator, putative 660324 12518817 PPUBIRD1_0586 Pseudomonas putida BIRD-1 Transcriptional regulator, putative YP_005928482.1 659623 R 931281 CDS YP_005928483.1 386010206 12518818 complement(660511..661038) 1 NC_017530.1 Inorganic pyrophosphatase; Ppa 661038 ppa 12518818 ppa Pseudomonas putida BIRD-1 Ppa YP_005928483.1 660511 R 931281 CDS YP_005928484.1 386010207 12518819 complement(661131..661946) 1 NC_017530.1 hypothetical protein 661946 12518819 PPUBIRD1_0588 Pseudomonas putida BIRD-1 hypothetical protein YP_005928484.1 661131 R 931281 CDS YP_005928485.1 386010208 12518820 complement(661967..662614) 1 NC_017530.1 hypothetical protein 662614 12518820 PPUBIRD1_0589 Pseudomonas putida BIRD-1 hypothetical protein YP_005928485.1 661967 R 931281 CDS YP_005928486.1 386010209 12518821 complement(662849..663307) 1 NC_017530.1 Acetyltransferase 663307 12518821 PPUBIRD1_0590 Pseudomonas putida BIRD-1 Acetyltransferase YP_005928486.1 662849 R 931281 CDS YP_005928487.1 386010210 12518822 complement(663415..664233) 1 NC_017530.1 Ethanolamine ammonia-lyase light chain 664233 12518822 PPUBIRD1_0591 Pseudomonas putida BIRD-1 Ethanolamine ammonia-lyase light chain YP_005928487.1 663415 R 931281 CDS YP_005928488.1 386010211 12518823 complement(664242..665636) 1 NC_017530.1 Ethanolamine ammonia lyase large subunit 665636 12518823 PPUBIRD1_0592 Pseudomonas putida BIRD-1 Ethanolamine ammonia lyase large subunit YP_005928488.1 664242 R 931281 CDS YP_005928489.1 386010212 12518824 complement(665683..667131) 1 NC_017530.1 Ethanolamine transporter 667131 12518824 PPUBIRD1_0593 Pseudomonas putida BIRD-1 Ethanolamine transporter YP_005928489.1 665683 R 931281 CDS YP_005928490.1 386010213 12518825 complement(667358..668878) 1 NC_017530.1 Aldehyde dehydrogenase 668878 12518825 PPUBIRD1_0594 Pseudomonas putida BIRD-1 Aldehyde dehydrogenase YP_005928490.1 667358 R 931281 CDS YP_005928491.1 386010214 12518826 669133..671145 1 NC_017530.1 GAF modulated Fis family sigma-54 specific transcriptional regulator 671145 12518826 PPUBIRD1_0595 Pseudomonas putida BIRD-1 GAF modulated Fis family sigma-54 specific transcriptional regulator YP_005928491.1 669133 D 931281 CDS YP_005928492.1 386010215 12518827 671212..672561 1 NC_017530.1 UDP-N-acetylmuramate 672561 12518827 PPUBIRD1_0596 Pseudomonas putida BIRD-1 UDP-N-acetylmuramate YP_005928492.1 671212 D 931281 CDS YP_005928493.1 386010216 12518828 672558..673187 1 NC_017530.1 aromatic acid decarboxylase; UbiD 673187 ubiD 12518828 ubiD Pseudomonas putida BIRD-1 UbiD YP_005928493.1 672558 D 931281 CDS YP_005928494.1 386010217 12518829 673184..673471 1 NC_017530.1 hypothetical protein 673471 12518829 PPUBIRD1_0598 Pseudomonas putida BIRD-1 hypothetical protein YP_005928494.1 673184 D 931281 CDS YP_005928495.1 386010218 12518830 complement(673498..674142) 1 NC_017530.1 hypothetical protein 674142 12518830 PPUBIRD1_0599 Pseudomonas putida BIRD-1 hypothetical protein YP_005928495.1 673498 R 931281 CDS YP_005928496.1 386010219 12518831 complement(674170..675903) 1 NC_017530.1 MORN repeat-containing protein 675903 12518831 PPUBIRD1_0600 Pseudomonas putida BIRD-1 MORN repeat-containing protein YP_005928496.1 674170 R 931281 CDS YP_005928497.1 386010220 12518832 complement(676111..677199) 1 NC_017530.1 Alcohol dehydrogenase 677199 12518832 PPUBIRD1_0602 Pseudomonas putida BIRD-1 Alcohol dehydrogenase YP_005928497.1 676111 R 931281 CDS YP_005928498.1 386010221 12518833 complement(677228..678334) 1 NC_017530.1 branched-chain alpha-keto acid dehydrogenase subunit E2; AcoC 678334 acoC 12518833 acoC Pseudomonas putida BIRD-1 AcoC YP_005928498.1 677228 R 931281 CDS YP_005928499.1 386010222 12518834 complement(678331..679353) 1 NC_017530.1 acetoin dehydrogenase, beta subunit; protein AcoB 679353 acoB 12518834 acoB Pseudomonas putida BIRD-1 protein AcoB YP_005928499.1 678331 R 931281 CDS YP_005928500.1 386010223 12518835 complement(679387..680364) 1 NC_017530.1 pyruvate dehydrogenase (acetyl-transferring); protein AcoA 680364 acoA 12518835 acoA Pseudomonas putida BIRD-1 protein AcoA YP_005928500.1 679387 R 931281 CDS YP_005928501.1 386010224 12518836 complement(680387..681442) 1 NC_017530.1 ATP-NAD/AcoX kinase 681442 12518836 PPUBIRD1_0606 Pseudomonas putida BIRD-1 ATP-NAD/AcoX kinase YP_005928501.1 680387 R 931281 CDS YP_005928502.1 386010225 12518837 681771..683579 1 NC_017530.1 Fis family GAF modulated sigma54 specific transcriptional regulator 683579 12518837 PPUBIRD1_0607 Pseudomonas putida BIRD-1 Fis family GAF modulated sigma54 specific transcriptional regulator YP_005928502.1 681771 D 931281 CDS YP_005928503.1 386010226 12518838 complement(683670..685025) 1 NC_017530.1 Biotin carboxylase; bifunctional; AccC_2 685025 accC_2 12518838 accC_2 Pseudomonas putida BIRD-1 AccC_2 YP_005928503.1 683670 R 931281 CDS YP_005928504.1 386010227 12518839 complement(685043..685504) 1 NC_017530.1 Acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 685504 12518839 PPUBIRD1_0609 Pseudomonas putida BIRD-1 Acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YP_005928504.1 685043 R 931281 CDS YP_005928505.1 386010228 12518840 complement(685604..686059) 1 NC_017530.1 3-dehydroquinate dehydratase 1; protein AroQ 686059 aroQ 12518840 aroQ Pseudomonas putida BIRD-1 protein AroQ YP_005928505.1 685604 R 931281 CDS YP_005928506.1 386010229 12518841 complement(686239..688011) 1 NC_017530.1 thiol:disulfide interchange protein precursor; DipZ 688011 dipZ 12518841 dipZ Pseudomonas putida BIRD-1 DipZ YP_005928506.1 686239 R 931281 CDS YP_005928507.1 386010230 12518842 complement(688200..690161) 1 NC_017530.1 methyl-accepting chemotaxis sensory transducer; CtpL 690161 ctpL 12518842 ctpL Pseudomonas putida BIRD-1 CtpL YP_005928507.1 688200 R 931281 CDS YP_005928508.1 386010231 12518843 complement(690308..691663) 1 NC_017530.1 Response regulator receiver modulated diguanylate cyclase 691663 12518843 PPUBIRD1_0613 Pseudomonas putida BIRD-1 Response regulator receiver modulated diguanylate cyclase YP_005928508.1 690308 R 931281 CDS YP_005928509.1 386010232 12518844 691912..692979 1 NC_017530.1 hypothetical protein 692979 12518844 PPUBIRD1_0614 Pseudomonas putida BIRD-1 hypothetical protein YP_005928509.1 691912 D 931281 CDS YP_005928510.1 386010233 12518845 692982..693518 1 NC_017530.1 NUDIX hydrolase 693518 12518845 PPUBIRD1_0615 Pseudomonas putida BIRD-1 NUDIX hydrolase YP_005928510.1 692982 D 931281 CDS YP_005928511.1 386010234 12518846 693802..694173 1 NC_017530.1 Translation initiation factor SUI1 694173 12518846 PPUBIRD1_0616 Pseudomonas putida BIRD-1 Translation initiation factor SUI1 YP_005928511.1 693802 D 931281 CDS YP_005928512.1 386010235 12518847 694324..696237 1 NC_017530.1 Biosynthetic arginine decarboxylase; protein SpeA 696237 speA 12518847 speA Pseudomonas putida BIRD-1 protein SpeA YP_005928512.1 694324 D 931281 CDS YP_005928513.1 386010236 12518848 696446..696901 1 NC_017530.1 hypothetical protein 696901 12518848 PPUBIRD1_0618 Pseudomonas putida BIRD-1 hypothetical protein YP_005928513.1 696446 D 931281 CDS YP_005928514.1 386010237 12518849 complement(696975..698312) 1 NC_017530.1 MATE efflux family protein 698312 12518849 PPUBIRD1_0619 Pseudomonas putida BIRD-1 MATE efflux family protein YP_005928514.1 696975 R 931281 CDS YP_005928515.1 386010238 12518850 698590..703485 1 NC_017530.1 lipoprotein yfhM 703485 12518850 PPUBIRD1_0620 Pseudomonas putida BIRD-1 lipoprotein yfhM YP_005928515.1 698590 D 931281 CDS YP_005928516.1 386010239 12518851 complement(703637..703930) 1 NC_017530.1 hypothetical protein 703930 12518851 PPUBIRD1_0621 Pseudomonas putida BIRD-1 hypothetical protein YP_005928516.1 703637 R 931281 CDS YP_005928517.1 386010240 12518852 704047..706362 1 NC_017530.1 Penicillin-binding protein 1C; PbpC 706362 pbpC 12518852 pbpC Pseudomonas putida BIRD-1 PbpC YP_005928517.1 704047 D 931281 CDS YP_005928518.1 386010241 12518853 706455..708119 1 NC_017530.1 Polypeptide-transport-associated domain-containing protein 708119 12518853 PPUBIRD1_0623 Pseudomonas putida BIRD-1 Polypeptide-transport-associated domain-containing protein YP_005928518.1 706455 D 931281 CDS YP_005928519.1 386010242 12518854 complement(708192..708941) 1 NC_017530.1 LuxR family DNA-binding response regulator 708941 12518854 PPUBIRD1_0624 Pseudomonas putida BIRD-1 LuxR family DNA-binding response regulator YP_005928519.1 708192 R 931281 CDS YP_005928520.1 386010243 12518855 complement(709088..709558) 1 NC_017530.1 hypothetical protein 709558 12518855 PPUBIRD1_0625 Pseudomonas putida BIRD-1 hypothetical protein YP_005928520.1 709088 R 931281 CDS YP_005928521.1 386010244 12518856 complement(709864..710433) 1 NC_017530.1 hypothetical protein 710433 12518856 PPUBIRD1_0626 Pseudomonas putida BIRD-1 hypothetical protein YP_005928521.1 709864 R 931281 CDS YP_005928522.1 386010245 12518857 complement(710453..711088) 1 NC_017530.1 hypothetical protein 711088 12518857 PPUBIRD1_0627 Pseudomonas putida BIRD-1 hypothetical protein YP_005928522.1 710453 R 931281 CDS YP_005928523.1 386010246 12518858 complement(711111..711860) 1 NC_017530.1 Methyltransferase, putative 711860 12518858 PPUBIRD1_0628 Pseudomonas putida BIRD-1 Methyltransferase, putative YP_005928523.1 711111 R 931281 CDS YP_005928524.1 386010247 12518859 complement(711857..712162) 1 NC_017530.1 hypothetical protein 712162 12518859 PPUBIRD1_0629 Pseudomonas putida BIRD-1 hypothetical protein YP_005928524.1 711857 R 931281 CDS YP_005928525.1 386010248 12518860 complement(712239..713120) 1 NC_017530.1 Dehydratase 713120 12518860 PPUBIRD1_0630 Pseudomonas putida BIRD-1 Dehydratase YP_005928525.1 712239 R 931281 CDS YP_005928526.1 386010249 12518861 complement(713093..714445) 1 NC_017530.1 3-ketoacyl-(acyl-carrier-protein) reductase; protein FabG 714445 fabG 12518861 fabG Pseudomonas putida BIRD-1 protein FabG YP_005928526.1 713093 R 931281 CDS YP_005928527.1 386010250 12518862 714563..715840 1 NC_017530.1 Acetyl-CoA acetyltransferase 715840 12518862 PPUBIRD1_0632 Pseudomonas putida BIRD-1 Acetyl-CoA acetyltransferase YP_005928527.1 714563 D 931281 CDS YP_005928528.1 386010251 12518863 715930..716709 1 NC_017530.1 AraC family transcriptional regulator 716709 12518863 PPUBIRD1_0633 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005928528.1 715930 D 931281 CDS YP_005928529.1 386010252 12518864 complement(716802..718745) 1 NC_017530.1 methyl-accepting chemotaxis sensory transducer 718745 12518864 PPUBIRD1_0634 Pseudomonas putida BIRD-1 methyl-accepting chemotaxis sensory transducer YP_005928529.1 716802 R 931281 CDS YP_005928530.1 386010253 12518865 complement(718913..719323) 1 NC_017530.1 MerR family transcriptional regulator 719323 12518865 PPUBIRD1_0635 Pseudomonas putida BIRD-1 MerR family transcriptional regulator YP_005928530.1 718913 R 931281 CDS YP_005928531.1 386010254 12518866 complement(719320..721719) 1 NC_017530.1 Heavy metal translocating P-type ATPase 721719 12518866 PPUBIRD1_0636 Pseudomonas putida BIRD-1 Heavy metal translocating P-type ATPase YP_005928531.1 719320 R 931281 CDS YP_005928532.1 386010255 12518867 complement(721772..722158) 1 NC_017530.1 hypothetical protein 722158 12518867 PPUBIRD1_0637 Pseudomonas putida BIRD-1 hypothetical protein YP_005928532.1 721772 R 931281 CDS YP_005928533.1 386010256 12518868 722304..722501 1 NC_017530.1 heavy metal transport/detoxification protein 722501 12518868 PPUBIRD1_0638 Pseudomonas putida BIRD-1 heavy metal transport/detoxification protein YP_005928533.1 722304 D 931281 CDS YP_005928534.1 386010257 12518869 722609..723790 1 NC_017530.1 Bcr/CflA family multidrug resistance transporter 723790 12518869 PPUBIRD1_0639 Pseudomonas putida BIRD-1 Bcr/CflA family multidrug resistance transporter YP_005928534.1 722609 D 931281 CDS YP_005928535.1 386010258 12518870 724272..725141 1 NC_017530.1 Regulatory protein, ArsR 725141 12518870 PPUBIRD1_0640 Pseudomonas putida BIRD-1 Regulatory protein, ArsR YP_005928535.1 724272 D 931281 CDS YP_005928536.1 386010259 12518871 complement(725162..726109) 1 NC_017530.1 Adenosine deaminase 726109 12518871 PPUBIRD1_0641 Pseudomonas putida BIRD-1 Adenosine deaminase YP_005928536.1 725162 R 931281 CDS YP_005928537.1 386010260 12518872 complement(726196..726882) 1 NC_017530.1 short-chain dehydrogenase 726882 12518872 PPUBIRD1_0642 Pseudomonas putida BIRD-1 short-chain dehydrogenase YP_005928537.1 726196 R 931281 CDS YP_005928538.1 386010261 12518873 complement(727250..727834) 1 NC_017530.1 hypothetical protein 727834 12518873 PPUBIRD1_0643 Pseudomonas putida BIRD-1 hypothetical protein YP_005928538.1 727250 R 931281 CDS YP_005928539.1 386010262 12518874 complement(727844..728506) 1 NC_017530.1 TetR family transcriptional regulator 728506 12518874 PPUBIRD1_0644 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005928539.1 727844 R 931281 CDS YP_005928540.1 386010263 12518875 complement(728597..729514) 1 NC_017530.1 LysR family transcriptional regulator 729514 12518875 PPUBIRD1_0645 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005928540.1 728597 R 931281 CDS YP_005928541.1 386010264 12518876 729633..730979 1 NC_017530.1 Omega-amino acid--pyruvate aminotransferase 730979 12518876 PPUBIRD1_0646 Pseudomonas putida BIRD-1 Omega-amino acid--pyruvate aminotransferase YP_005928541.1 729633 D 931281 CDS YP_005928542.1 386010265 12518877 731049..732542 1 NC_017530.1 methylmalonate-semialdehyde dehydrogenase; MmsA 732542 mmsA 12518877 mmsA Pseudomonas putida BIRD-1 MmsA YP_005928542.1 731049 D 931281 CDS YP_005928543.1 386010266 12518883 738739..739398 1 NC_017530.1 Paraquat-inducible protein A 739398 12518883 PPUBIRD1_0648 Pseudomonas putida BIRD-1 Paraquat-inducible protein A YP_005928543.1 738739 D 931281 CDS YP_005928544.1 386010267 12518884 739385..740008 1 NC_017530.1 Paraquat-inducible protein A 740008 12518884 PPUBIRD1_0649 Pseudomonas putida BIRD-1 Paraquat-inducible protein A YP_005928544.1 739385 D 931281 CDS YP_005928545.1 386010268 12518885 740001..742301 1 NC_017530.1 hypothetical protein 742301 12518885 PPUBIRD1_0650 Pseudomonas putida BIRD-1 hypothetical protein YP_005928545.1 740001 D 931281 CDS YP_005928546.1 386010269 12518886 complement(742536..742814) 1 NC_017530.1 30S ribosomal protein S20; protein RpsT 742814 rpsT 12518886 rpsT Pseudomonas putida BIRD-1 protein RpsT YP_005928546.1 742536 R 931281 CDS YP_005928547.1 386010270 12518887 743065..744603 1 NC_017530.1 Integral membrane protein MviN 744603 12518887 PPUBIRD1_0652 Pseudomonas putida BIRD-1 Integral membrane protein MviN YP_005928547.1 743065 D 931281 CDS YP_005928548.1 386010271 12518888 744722..745672 1 NC_017530.1 bifunctional; Bifunctional riboflavin kinase/FMN adenylyltransferase 745672 12518888 PPUBIRD1_0653 Pseudomonas putida BIRD-1 Bifunctional riboflavin kinase/FMN adenylyltransferase YP_005928548.1 744722 D 931281 CDS YP_005928549.1 386010272 12518889 745669..748500 1 NC_017530.1 Isoleucyl-tRNA synthetase; protein IleS 748500 ileS 12518889 ileS Pseudomonas putida BIRD-1 protein IleS YP_005928549.1 745669 D 931281 CDS YP_005928550.1 386010273 12518890 748493..749008 1 NC_017530.1 Lipoprotein signal peptidase; protein LspA 749008 lspA 12518890 lspA Pseudomonas putida BIRD-1 protein LspA YP_005928550.1 748493 D 931281 CDS YP_005928551.1 386010274 12518891 749001..749438 1 NC_017530.1 Peptidylprolyl isomerase, FKBP-type 749438 12518891 PPUBIRD1_0656 Pseudomonas putida BIRD-1 Peptidylprolyl isomerase, FKBP-type YP_005928551.1 749001 D 931281 CDS YP_005928552.1 386010275 12518892 749453..750400 1 NC_017530.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; protein IspH 750400 ispH 12518892 ispH Pseudomonas putida BIRD-1 protein IspH YP_005928552.1 749453 D 931281 CDS YP_005928553.1 386010276 12518893 complement(750477..750929) 1 NC_017530.1 Type IV pili biogenesis protein FimT, putative 750929 12518893 PPUBIRD1_0658 Pseudomonas putida BIRD-1 Type IV pili biogenesis protein FimT, putative YP_005928553.1 750477 R 931281 CDS YP_005928554.1 386010277 12518894 751069..751251 1 NC_017530.1 COG4967; PilV, Tfp pilus assembly protein PilV 751251 12518894 PPUBIRD1_0659 Pseudomonas putida BIRD-1 PilV, Tfp pilus assembly protein PilV YP_005928554.1 751069 D 931281 CDS YP_005928555.1 386010278 12518895 751248..751892 1 NC_017530.1 hypothetical protein 751892 12518895 PPUBIRD1_0660 Pseudomonas putida BIRD-1 hypothetical protein YP_005928555.1 751248 D 931281 CDS YP_005928556.1 386010279 12518896 751889..752353 1 NC_017530.1 hypothetical protein 752353 12518896 PPUBIRD1_0661 Pseudomonas putida BIRD-1 hypothetical protein YP_005928556.1 751889 D 931281 CDS YP_005928557.1 386010280 12518897 752355..752744 1 NC_017530.1 type IV pili biogenesis protein PilE; PilE 752744 pilE 12518897 pilE Pseudomonas putida BIRD-1 PilE YP_005928557.1 752355 D 931281 CDS YP_005928558.1 386010281 12518898 752799..753896 1 NC_017530.1 FAD dependent oxidoreductase 753896 12518898 PPUBIRD1_0663 Pseudomonas putida BIRD-1 FAD dependent oxidoreductase YP_005928558.1 752799 D 931281 CDS YP_005928559.1 386010282 12518899 complement(754041..755450) 1 NC_017530.1 Putative amidase 755450 12518899 PPUBIRD1_0664 Pseudomonas putida BIRD-1 Putative amidase YP_005928559.1 754041 R 931281 CDS YP_005928560.1 386010283 12518900 complement(755452..756729) 1 NC_017530.1 Allantoate amidohydrolase 756729 12518900 PPUBIRD1_0665 Pseudomonas putida BIRD-1 Allantoate amidohydrolase YP_005928560.1 755452 R 931281 CDS YP_005928561.1 386010284 12518901 complement(756882..757577) 1 NC_017530.1 ABC transporter 757577 12518901 PPUBIRD1_0666 Pseudomonas putida BIRD-1 ABC transporter YP_005928561.1 756882 R 931281 CDS YP_005928562.1 386010285 12518902 complement(757577..758329) 1 NC_017530.1 ABC transporter 758329 12518902 PPUBIRD1_0667 Pseudomonas putida BIRD-1 ABC transporter YP_005928562.1 757577 R 931281 CDS YP_005928563.1 386010286 12518903 complement(758329..759348) 1 NC_017530.1 Inner-membrane translocator 759348 12518903 PPUBIRD1_0668 Pseudomonas putida BIRD-1 Inner-membrane translocator YP_005928563.1 758329 R 931281 CDS YP_005928564.1 386010287 12518904 complement(759350..760210) 1 NC_017530.1 Inner-membrane translocator 760210 12518904 PPUBIRD1_0669 Pseudomonas putida BIRD-1 Inner-membrane translocator YP_005928564.1 759350 R 931281 CDS YP_005928565.1 386010288 12518905 complement(760276..761478) 1 NC_017530.1 Branched chain amino acid ABC transporter amino acid-binding protein 761478 12518905 PPUBIRD1_0670 Pseudomonas putida BIRD-1 Branched chain amino acid ABC transporter amino acid-binding protein YP_005928565.1 760276 R 931281 CDS YP_005928566.1 386010289 12518906 complement(761569..762348) 1 NC_017530.1 Regulatory protein GntR, HTH 762348 12518906 PPUBIRD1_0671 Pseudomonas putida BIRD-1 Regulatory protein GntR, HTH YP_005928566.1 761569 R 931281 CDS YP_005928567.1 386010290 12518907 complement(762600..762830) 1 NC_017530.1 hypothetical protein 762830 12518907 PPUBIRD1_0672 Pseudomonas putida BIRD-1 hypothetical protein YP_005928567.1 762600 R 931281 CDS YP_005928568.1 386010291 12518908 complement(762925..763944) 1 NC_017530.1 DNA uptake lipoprotein-like protein 763944 12518908 PPUBIRD1_0673 Pseudomonas putida BIRD-1 DNA uptake lipoprotein-like protein YP_005928568.1 762925 R 931281 CDS YP_005928569.1 386010292 12518909 763996..765054 1 NC_017530.1 RluA family pseudouridine synthase 765054 12518909 PPUBIRD1_0674 Pseudomonas putida BIRD-1 RluA family pseudouridine synthase YP_005928569.1 763996 D 931281 CDS YP_005928570.1 386010293 12518910 765051..765791 1 NC_017530.1 hypothetical protein 765791 12518910 PPUBIRD1_0675 Pseudomonas putida BIRD-1 hypothetical protein YP_005928570.1 765051 D 931281 CDS YP_005928571.1 386010294 12518911 766110..768605 1 NC_017530.1 Chaperone protein clpB; chaperone ClpB 768605 clpB 12518911 clpB Pseudomonas putida BIRD-1 chaperone ClpB YP_005928571.1 766110 D 931281 CDS YP_005928572.1 386010295 12518915 complement(769399..770694) 1 NC_017530.1 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Ndh 770694 ndh 12518915 ndh Pseudomonas putida BIRD-1 Ndh YP_005928572.1 769399 R 931281 CDS YP_005928573.1 386010296 12518916 complement(770779..770952) 1 NC_017530.1 hypothetical protein 770952 12518916 PPUBIRD1_0679 Pseudomonas putida BIRD-1 hypothetical protein YP_005928573.1 770779 R 931281 CDS YP_005928574.1 386010297 12518917 complement(771085..771714) 1 NC_017530.1 hypothetical protein 771714 12518917 PPUBIRD1_0680 Pseudomonas putida BIRD-1 hypothetical protein YP_005928574.1 771085 R 931281 CDS YP_005928575.1 386010298 12518918 complement(771770..772201) 1 NC_017530.1 hypothetical protein 772201 12518918 PPUBIRD1_0681 Pseudomonas putida BIRD-1 hypothetical protein YP_005928575.1 771770 R 931281 CDS YP_005928576.1 386010299 12518919 772288..772995 1 NC_017530.1 hypothetical protein 772995 12518919 PPUBIRD1_0682 Pseudomonas putida BIRD-1 hypothetical protein YP_005928576.1 772288 D 931281 CDS YP_005928577.1 386010300 12518920 complement(773172..773372) 1 NC_017530.1 Zinc-binding protein 773372 12518920 PPUBIRD1_0683 Pseudomonas putida BIRD-1 Zinc-binding protein YP_005928577.1 773172 R 931281 CDS YP_005928578.1 386010301 12518921 complement(773369..773992) 1 NC_017530.1 Dephospho-CoA kinase; CoaE 773992 coaE 12518921 coaE Pseudomonas putida BIRD-1 CoaE YP_005928578.1 773369 R 931281 CDS YP_005928579.1 386010302 12518922 complement(773992..774843) 1 NC_017530.1 prepilin peptidase 774843 12518922 PPUBIRD1_0685 Pseudomonas putida BIRD-1 prepilin peptidase YP_005928579.1 773992 R 931281 CDS YP_005928580.1 386010303 12518923 complement(774861..776129) 1 NC_017530.1 type IV pili biogenesis protein PilC; protein PilC 776129 pilC 12518923 pilC Pseudomonas putida BIRD-1 protein PilC YP_005928580.1 774861 R 931281 CDS YP_005928581.1 386010304 12518924 776286..776696 1 NC_017530.1 Fimbrial protein pilin 776696 12518924 PPUBIRD1_0687 Pseudomonas putida BIRD-1 Fimbrial protein pilin YP_005928581.1 776286 D 931281 CDS YP_005928582.1 386010305 12518926 777093..778247 1 NC_017530.1 Filamentation induced by cAMP protein Fic 778247 12518926 PPUBIRD1_0688 Pseudomonas putida BIRD-1 Filamentation induced by cAMP protein Fic YP_005928582.1 777093 D 931281 CDS YP_005928583.1 386010306 12518927 779980..780396 1 NC_017530.1 hypothetical protein 780396 12518927 PPUBIRD1_0689 Pseudomonas putida BIRD-1 hypothetical protein YP_005928583.1 779980 D 931281 CDS YP_005928584.1 386010307 12518928 783943..785097 1 NC_017530.1 hypothetical protein 785097 12518928 PPUBIRD1_0691 Pseudomonas putida BIRD-1 hypothetical protein YP_005928584.1 783943 D 931281 CDS YP_005928585.1 386010308 12518929 complement(785473..787005) 1 NC_017530.1 hypothetical protein 787005 12518929 PPUBIRD1_0692 Pseudomonas putida BIRD-1 hypothetical protein YP_005928585.1 785473 R 931281 CDS YP_005928586.1 386010309 12518930 complement(787159..787383) 1 NC_017530.1 ISPsy5, Orf1 787383 12518930 PPUBIRD1_0693 Pseudomonas putida BIRD-1 ISPsy5, Orf1 YP_005928586.1 787159 R 931281 CDS YP_005928587.1 386010310 12518931 complement(788393..790399) 1 NC_017530.1 Putative ATP-dependent helicase 790399 12518931 PPUBIRD1_0694 Pseudomonas putida BIRD-1 Putative ATP-dependent helicase YP_005928587.1 788393 R 931281 CDS YP_005928588.1 386010311 12518932 791520..791732 1 NC_017530.1 hypothetical protein 791732 12518932 PPUBIRD1_0695 Pseudomonas putida BIRD-1 hypothetical protein YP_005928588.1 791520 D 931281 CDS YP_005928589.1 386010312 12518933 791977..792675 1 NC_017530.1 hypothetical protein 792675 12518933 PPUBIRD1_0696 Pseudomonas putida BIRD-1 hypothetical protein YP_005928589.1 791977 D 931281 CDS YP_005928590.1 386010313 12518934 complement(792772..794157) 1 NC_017530.1 gluconate transporter 794157 12518934 PPUBIRD1_0697 Pseudomonas putida BIRD-1 gluconate transporter YP_005928590.1 792772 R 931281 CDS YP_005928591.1 386010314 12518935 794590..795519 1 NC_017530.1 malate dehydrogenase 795519 12518935 PPUBIRD1_0698 Pseudomonas putida BIRD-1 malate dehydrogenase YP_005928591.1 794590 D 931281 CDS YP_005928592.1 386010315 12518936 complement(795625..796416) 1 NC_017530.1 Polar amino acid ABC transporter inner membrane subunit 796416 12518936 PPUBIRD1_0699 Pseudomonas putida BIRD-1 Polar amino acid ABC transporter inner membrane subunit YP_005928592.1 795625 R 931281 CDS YP_005928593.1 386010316 12518937 complement(796443..797264) 1 NC_017530.1 Extracellular solute-binding protein 797264 12518937 PPUBIRD1_0700 Pseudomonas putida BIRD-1 Extracellular solute-binding protein YP_005928593.1 796443 R 931281 CDS YP_005928594.1 386010317 12518938 797383..798267 1 NC_017530.1 Homocysteine S-methyltransferase family protein 798267 12518938 PPUBIRD1_0701 Pseudomonas putida BIRD-1 Homocysteine S-methyltransferase family protein YP_005928594.1 797383 D 931281 CDS YP_005928595.1 386010318 12518939 798435..799706 1 NC_017530.1 cystathionine gamma-synthase; protein MetB 799706 metB 12518939 metB Pseudomonas putida BIRD-1 protein MetB YP_005928595.1 798435 D 931281 CDS YP_005928596.1 386010319 12518940 799849..801288 1 NC_017530.1 amino acid transporter 801288 12518940 PPUBIRD1_0703 Pseudomonas putida BIRD-1 amino acid transporter YP_005928596.1 799849 D 931281 CDS YP_005928597.1 386010320 12518941 801334..802218 1 NC_017530.1 Transcriptional regulator AmpR, putative 802218 12518941 PPUBIRD1_0704 Pseudomonas putida BIRD-1 Transcriptional regulator AmpR, putative YP_005928597.1 801334 D 931281 CDS YP_005928598.1 386010321 12518942 802243..803631 1 NC_017530.1 Threonine synthase 803631 12518942 PPUBIRD1_0705 Pseudomonas putida BIRD-1 Threonine synthase YP_005928598.1 802243 D 931281 CDS YP_005928599.1 386010322 12518943 803628..804065 1 NC_017530.1 AsnC family transcriptional regulator 804065 12518943 PPUBIRD1_0706 Pseudomonas putida BIRD-1 AsnC family transcriptional regulator YP_005928599.1 803628 D 931281 CDS YP_005928600.1 386010323 12518944 804264..805307 1 NC_017530.1 Homoserine dehydrogenase 805307 12518944 PPUBIRD1_0707 Pseudomonas putida BIRD-1 Homoserine dehydrogenase YP_005928600.1 804264 D 931281 CDS YP_005928601.1 386010324 12518945 805320..806738 1 NC_017530.1 Glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent,putative 806738 12518945 PPUBIRD1_0708 Pseudomonas putida BIRD-1 Glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent,putative YP_005928601.1 805320 D 931281 CDS YP_005928602.1 386010325 12518946 806785..807102 1 NC_017530.1 hypothetical protein 807102 12518946 PPUBIRD1_0709 Pseudomonas putida BIRD-1 hypothetical protein YP_005928602.1 806785 D 931281 CDS YP_005928603.1 386010326 12518947 complement(807130..808083) 1 NC_017530.1 Bile acid/Na+ symporter family protein 808083 12518947 PPUBIRD1_0710 Pseudomonas putida BIRD-1 Bile acid/Na+ symporter family protein YP_005928603.1 807130 R 931281 CDS YP_005928604.1 386010327 12518948 complement(808332..809585) 1 NC_017530.1 Serine hydroxymethyltransferase 2; GlyA_2 809585 glyA_2 12518948 glyA_2 Pseudomonas putida BIRD-1 GlyA_2 YP_005928604.1 808332 R 931281 CDS YP_005928605.1 386010328 12518949 complement(809892..813722) 1 NC_017530.1 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 813722 12518949 PPUBIRD1_0712 Pseudomonas putida BIRD-1 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) YP_005928605.1 809892 R 931281 CDS YP_005928606.1 386010329 12518950 813971..814375 1 NC_017530.1 hypothetical protein 814375 12518950 PPUBIRD1_0713 Pseudomonas putida BIRD-1 hypothetical protein YP_005928606.1 813971 D 931281 CDS YP_005928607.1 386010330 12518951 814680..816347 1 NC_017530.1 ABC transporter ATP-binding protein HI1252 816347 12518951 PPUBIRD1_0714 Pseudomonas putida BIRD-1 ABC transporter ATP-binding protein HI1252 YP_005928607.1 814680 D 931281 CDS YP_005928608.1 386010331 12518952 816569..817909 1 NC_017530.1 glutamate dehydrogenase; protein GdhA 817909 gdhA 12518952 gdhA Pseudomonas putida BIRD-1 protein GdhA YP_005928608.1 816569 D 931281 CDS YP_005928609.1 386010332 12518953 complement(818074..818571) 1 NC_017530.1 GreA/GreB family elongation factor 818571 12518953 PPUBIRD1_0716 Pseudomonas putida BIRD-1 GreA/GreB family elongation factor YP_005928609.1 818074 R 931281 CDS YP_005928610.1 386010333 12518954 complement(818639..818995) 1 NC_017530.1 Putative lipoprotein 818995 12518954 PPUBIRD1_0717 Pseudomonas putida BIRD-1 Putative lipoprotein YP_005928610.1 818639 R 931281 CDS YP_005928611.1 386010334 12518955 complement(819212..821065) 1 NC_017530.1 hypothetical protein 821065 12518955 PPUBIRD1_0718 Pseudomonas putida BIRD-1 hypothetical protein YP_005928611.1 819212 R 931281 CDS YP_005928612.1 386010335 12518956 complement(821137..821625) 1 NC_017530.1 hypothetical protein 821625 12518956 PPUBIRD1_0719 Pseudomonas putida BIRD-1 hypothetical protein YP_005928612.1 821137 R 931281 CDS YP_005928613.1 386010336 12518957 821876..824314 1 NC_017530.1 ATP-dependent protease 824314 12518957 PPUBIRD1_0721 Pseudomonas putida BIRD-1 ATP-dependent protease YP_005928613.1 821876 D 931281 CDS YP_005928614.1 386010337 12518958 824477..824815 1 NC_017530.1 hypothetical protein 824815 12518958 PPUBIRD1_0722 Pseudomonas putida BIRD-1 hypothetical protein YP_005928614.1 824477 D 931281 CDS YP_005928615.1 386010338 12518959 825005..825493 1 NC_017530.1 hypothetical protein 825493 12518959 PPUBIRD1_0723 Pseudomonas putida BIRD-1 hypothetical protein YP_005928615.1 825005 D 931281 CDS YP_005928616.1 386010339 12518960 825710..826015 1 NC_017530.1 hypothetical protein 826015 12518960 PPUBIRD1_0724 Pseudomonas putida BIRD-1 hypothetical protein YP_005928616.1 825710 D 931281 CDS YP_005928617.1 386010340 12518961 826101..826718 1 NC_017530.1 peptidyl-prolyl cis-trans isomerase, FKBP-type; FklB_2 826718 fklB_2 12518961 fklB_2 Pseudomonas putida BIRD-1 FklB_2 YP_005928617.1 826101 D 931281 CDS YP_005928618.1 386010341 12518962 complement(826745..826990) 1 NC_017530.1 hypothetical protein 826990 12518962 PPUBIRD1_0726 Pseudomonas putida BIRD-1 hypothetical protein YP_005928618.1 826745 R 931281 CDS YP_005928619.1 386010342 12518963 complement(827075..827416) 1 NC_017530.1 Alkylphosphonate utilization operon protein PhnA 827416 12518963 PPUBIRD1_0727 Pseudomonas putida BIRD-1 Alkylphosphonate utilization operon protein PhnA YP_005928619.1 827075 R 931281 CDS YP_005928620.1 386010343 12518964 complement(827576..828544) 1 NC_017530.1 polyprenyl synthetase; IspB protein 828544 ispB 12518964 ispB Pseudomonas putida BIRD-1 IspB protein YP_005928620.1 827576 R 931281 CDS YP_005928621.1 386010344 12518965 828789..829103 1 NC_017530.1 ribosomal protein L21; protein RplU 829103 rplU 12518965 rplU Pseudomonas putida BIRD-1 protein RplU YP_005928621.1 828789 D 931281 CDS YP_005928622.1 386010345 12518966 829208..829399 1 NC_017530.1 50S ribosomal protein L27; protein RpmA 829399 rpmA 12518966 rpmA Pseudomonas putida BIRD-1 protein RpmA YP_005928622.1 829208 D 931281 CDS YP_005928623.1 386010346 12518967 829588..830814 1 NC_017530.1 GTPase obg; ObgE 830814 obgE 12518967 obgE Pseudomonas putida BIRD-1 ObgE YP_005928623.1 829588 D 931281 CDS YP_005928624.1 386010347 12518968 830900..832018 1 NC_017530.1 Glutamate 5-kinase; ProB 832018 proB 12518968 proB Pseudomonas putida BIRD-1 ProB YP_005928624.1 830900 D 931281 CDS YP_005928625.1 386010348 12518969 832015..832476 1 NC_017530.1 CreA family protein 832476 creA 12518969 creA Pseudomonas putida BIRD-1 CreA family protein YP_005928625.1 832015 D 931281 CDS YP_005928626.1 386010349 12518970 complement(832704..835535) 1 NC_017530.1 hypothetical protein 835535 12518970 PPUBIRD1_0734 Pseudomonas putida BIRD-1 hypothetical protein YP_005928626.1 832704 R 931281 CDS YP_005928627.1 386010350 12518971 complement(835532..836239) 1 NC_017530.1 hypothetical protein 836239 12518971 PPUBIRD1_0735 Pseudomonas putida BIRD-1 hypothetical protein YP_005928627.1 835532 R 931281 CDS YP_005928628.1 386010351 12518972 complement(836229..837518) 1 NC_017530.1 hypothetical protein 837518 12518972 PPUBIRD1_0736 Pseudomonas putida BIRD-1 hypothetical protein YP_005928628.1 836229 R 931281 CDS YP_005928629.1 386010352 12518973 837730..838515 1 NC_017530.1 hypothetical protein 838515 12518973 PPUBIRD1_0737 Pseudomonas putida BIRD-1 hypothetical protein YP_005928629.1 837730 D 931281 CDS YP_005928630.1 386010353 12518974 838512..838967 1 NC_017530.1 Acetyltransferase 838967 12518974 PPUBIRD1_0738 Pseudomonas putida BIRD-1 Acetyltransferase YP_005928630.1 838512 D 931281 CDS YP_005928631.1 386010354 12518975 complement(839540..840457) 1 NC_017530.1 LysR family transcriptional regulator 840457 12518975 PPUBIRD1_0739 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005928631.1 839540 R 931281 CDS YP_005928632.1 386010355 12518976 840684..841298 1 NC_017530.1 Amino acid transporter LysE 841298 12518976 PPUBIRD1_0740 Pseudomonas putida BIRD-1 Amino acid transporter LysE YP_005928632.1 840684 D 931281 CDS YP_005928633.1 386010356 12518978 complement(841601..842524) 1 NC_017530.1 Anti-FecI sigma factor, FecR 842524 12518978 PPUBIRD1_0741 Pseudomonas putida BIRD-1 Anti-FecI sigma factor, FecR YP_005928633.1 841601 R 931281 CDS YP_005928634.1 386010357 12518979 842718..843932 1 NC_017530.1 Major facilitator transporter 843932 12518979 PPUBIRD1_0742 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005928634.1 842718 D 931281 CDS YP_005928635.1 386010358 12518980 844257..845414 1 NC_017530.1 Major facilitator family transporter 845414 12518980 PPUBIRD1_0744 Pseudomonas putida BIRD-1 Major facilitator family transporter YP_005928635.1 844257 D 931281 CDS YP_005928636.1 386010359 12518981 complement(845422..846372) 1 NC_017530.1 Anti-FecI sigma factor, FecR 846372 12518981 PPUBIRD1_0745 Pseudomonas putida BIRD-1 Anti-FecI sigma factor, FecR YP_005928636.1 845422 R 931281 CDS YP_005928637.1 386010360 12518982 complement(846365..846880) 1 NC_017530.1 ECF subfamily RNA polymerase sigma factor 846880 12518982 PPUBIRD1_0746 Pseudomonas putida BIRD-1 ECF subfamily RNA polymerase sigma factor YP_005928637.1 846365 R 931281 CDS YP_005928638.1 386010361 12518983 847052..847678 1 NC_017530.1 DNA-3-methyladenine glycosylase II 847678 12518983 PPUBIRD1_0747 Pseudomonas putida BIRD-1 DNA-3-methyladenine glycosylase II YP_005928638.1 847052 D 931281 CDS YP_005928639.1 386010362 12518984 847726..848778 1 NC_017530.1 Methylated-DNA--protein-cysteine methyltransferase 848778 12518984 PPUBIRD1_0748 Pseudomonas putida BIRD-1 Methylated-DNA--protein-cysteine methyltransferase YP_005928639.1 847726 D 931281 CDS YP_005928640.1 386010363 12518985 848835..851246 1 NC_017530.1 mechanosensitive ion channel protein MscS 851246 12518985 PPUBIRD1_0749 Pseudomonas putida BIRD-1 mechanosensitive ion channel protein MscS YP_005928640.1 848835 D 931281 CDS YP_005928641.1 386010364 12518986 complement(851486..851614) 1 NC_017530.1 Diguanylate phosphodiesterase 851614 12518986 PPUBIRD1_0750 Pseudomonas putida BIRD-1 Diguanylate phosphodiesterase YP_005928641.1 851486 R 931281 CDS YP_005928642.1 386010365 12518987 complement(851686..853116) 1 NC_017530.1 Betaine-aldehyde dehydrogenase, putative 853116 12518987 PPUBIRD1_0751 Pseudomonas putida BIRD-1 Betaine-aldehyde dehydrogenase, putative YP_005928642.1 851686 R 931281 CDS YP_005928643.1 386010366 12518988 complement(853130..854629) 1 NC_017530.1 NCS1 nucleoside transporter 854629 12518988 PPUBIRD1_0752 Pseudomonas putida BIRD-1 NCS1 nucleoside transporter YP_005928643.1 853130 R 931281 CDS YP_005928644.1 386010367 12518989 complement(854722..855093) 1 NC_017530.1 hypothetical protein 855093 12518989 PPUBIRD1_0753 Pseudomonas putida BIRD-1 hypothetical protein YP_005928644.1 854722 R 931281 CDS YP_005928645.1 386010368 12518990 855320..855940 1 NC_017530.1 Isochorismatase superfamily hydrolase 855940 12518990 PPUBIRD1_0754 Pseudomonas putida BIRD-1 Isochorismatase superfamily hydrolase YP_005928645.1 855320 D 931281 CDS YP_005928646.1 386010369 12518991 856160..856861 1 NC_017530.1 hypothetical protein 856861 12518991 PPUBIRD1_0755 Pseudomonas putida BIRD-1 hypothetical protein YP_005928646.1 856160 D 931281 CDS YP_005928647.1 386010370 12518992 856898..858094 1 NC_017530.1 Potassium efflux system protein 858094 12518992 PPUBIRD1_0756 Pseudomonas putida BIRD-1 Potassium efflux system protein YP_005928647.1 856898 D 931281 CDS YP_005928648.1 386010371 12518993 858135..859232 1 NC_017530.1 Permease 859232 12518993 PPUBIRD1_0757 Pseudomonas putida BIRD-1 Permease YP_005928648.1 858135 D 931281 CDS YP_005928649.1 386010372 12518994 859236..860750 1 NC_017530.1 NodT family RND efflux system outer membrane lipoprotein 860750 12518994 PPUBIRD1_0758 Pseudomonas putida BIRD-1 NodT family RND efflux system outer membrane lipoprotein YP_005928649.1 859236 D 931281 CDS YP_005928650.1 386010373 12518995 860747..861844 1 NC_017530.1 Secretion protein HlyD family protein 861844 12518995 PPUBIRD1_0759 Pseudomonas putida BIRD-1 Secretion protein HlyD family protein YP_005928650.1 860747 D 931281 CDS YP_005928651.1 386010374 12518996 861834..862856 1 NC_017530.1 hypothetical protein 862856 12518996 PPUBIRD1_0760 Pseudomonas putida BIRD-1 hypothetical protein YP_005928651.1 861834 D 931281 CDS YP_005928652.1 386010375 12518997 complement(862876..864588) 1 NC_017530.1 Sulfate transporter 864588 12518997 PPUBIRD1_0761 Pseudomonas putida BIRD-1 Sulfate transporter YP_005928652.1 862876 R 931281 CDS YP_005928653.1 386010376 12518998 complement(864626..865549) 1 NC_017530.1 LysR family transcriptional regulator 865549 12518998 PPUBIRD1_0762 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005928653.1 864626 R 931281 CDS YP_005928654.1 386010377 12518999 865666..866514 1 NC_017530.1 ThiJ/PfpI domain-containing protein 866514 12518999 PPUBIRD1_0763 Pseudomonas putida BIRD-1 ThiJ/PfpI domain-containing protein YP_005928654.1 865666 D 931281 CDS YP_005928655.1 386010378 12519000 866530..867252 1 NC_017530.1 3-oxoacyl-ACP reductase 867252 12519000 PPUBIRD1_0764 Pseudomonas putida BIRD-1 3-oxoacyl-ACP reductase YP_005928655.1 866530 D 931281 CDS YP_005928656.1 386010379 12519001 complement(867377..868477) 1 NC_017530.1 Translation-associated GTPase 868477 12519001 PPUBIRD1_0765 Pseudomonas putida BIRD-1 Translation-associated GTPase YP_005928656.1 867377 R 931281 CDS YP_005928657.1 386010380 12519002 complement(868502..869086) 1 NC_017530.1 Peptidyl-tRNA hydrolase; protein Pth 869086 pth 12519002 pth Pseudomonas putida BIRD-1 protein Pth YP_005928657.1 868502 R 931281 CDS YP_005928658.1 386010381 12519003 complement(869166..869759) 1 NC_017530.1 50S ribosomal protein L25 869759 12519003 PPUBIRD1_0767 Pseudomonas putida BIRD-1 50S ribosomal protein L25 YP_005928658.1 869166 R 931281 CDS YP_005928659.1 386010382 12519004 complement(869878..870819) 1 NC_017530.1 Ribose-phosphate pyrophosphokinase; PrsA 870819 prsA 12519004 prsA Pseudomonas putida BIRD-1 PrsA YP_005928659.1 869878 R 931281 CDS YP_005928660.1 386010383 12519006 complement(870963..871823) 1 NC_017530.1 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Ipk 871823 ipk 12519006 ipk Pseudomonas putida BIRD-1 Ipk YP_005928660.1 870963 R 931281 CDS YP_005928661.1 386010384 12519007 complement(871828..872445) 1 NC_017530.1 Outer-membrane lipoprotein lolB; LolB 872445 lolB 12519007 lolB Pseudomonas putida BIRD-1 LolB YP_005928661.1 871828 R 931281 CDS YP_005928662.1 386010385 12519008 complement(872450..874171) 1 NC_017530.1 TPR repeat-containing protein PA4667 874171 12519008 PPUBIRD1_0771 Pseudomonas putida BIRD-1 TPR repeat-containing protein PA4667 YP_005928662.1 872450 R 931281 CDS YP_005928663.1 386010386 12519009 complement(874641..875366) 1 NC_017530.1 Transferase, putative 875366 12519009 PPUBIRD1_0772 Pseudomonas putida BIRD-1 Transferase, putative YP_005928663.1 874641 R 931281 CDS YP_005928664.1 386010387 12519010 complement(875363..875593) 1 NC_017530.1 hypothetical protein 875593 12519010 PPUBIRD1_0773 Pseudomonas putida BIRD-1 hypothetical protein YP_005928664.1 875363 R 931281 CDS YP_005928665.1 386010388 12519011 complement(875962..878322) 1 NC_017530.1 hypothetical protein 878322 12519011 PPUBIRD1_0774 Pseudomonas putida BIRD-1 hypothetical protein YP_005928665.1 875962 R 931281 CDS YP_005928666.1 386010389 12519012 complement(878382..879683) 1 NC_017530.1 hypothetical protein 879683 12519012 PPUBIRD1_0775 Pseudomonas putida BIRD-1 hypothetical protein YP_005928666.1 878382 R 931281 CDS YP_005928667.1 386010390 12519013 complement(879705..880322) 1 NC_017530.1 Phosphatidylserine synthase, putative 880322 12519013 PPUBIRD1_0776 Pseudomonas putida BIRD-1 Phosphatidylserine synthase, putative YP_005928667.1 879705 R 931281 CDS YP_005928668.1 386010391 12519014 complement(880346..881380) 1 NC_017530.1 hypothetical protein 881380 12519014 PPUBIRD1_0777 Pseudomonas putida BIRD-1 hypothetical protein YP_005928668.1 880346 R 931281 CDS YP_005928669.1 386010392 12519015 882349..883626 1 NC_017530.1 Glutamyl-tRNA reductase; HemA protein 883626 hemA 12519015 hemA Pseudomonas putida BIRD-1 HemA protein YP_005928669.1 882349 D 931281 CDS YP_005928670.1 386010393 12519016 883623..884705 1 NC_017530.1 Peptide chain release factor 1; protein PrfA 884705 prfA 12519016 prfA Pseudomonas putida BIRD-1 protein PrfA YP_005928670.1 883623 D 931281 CDS YP_005928671.1 386010394 12519017 884705..885535 1 NC_017530.1 HemK family modification methylase 885535 12519017 PPUBIRD1_0780 Pseudomonas putida BIRD-1 HemK family modification methylase YP_005928671.1 884705 D 931281 CDS YP_005928672.1 386010395 12519018 885529..886284 1 NC_017530.1 Molybdopterin biosynthesis protein MoeB 886284 12519018 PPUBIRD1_0781 Pseudomonas putida BIRD-1 Molybdopterin biosynthesis protein MoeB YP_005928672.1 885529 D 931281 CDS YP_005928673.1 386010396 12519019 886277..887074 1 NC_017530.1 glutamate racemase 887074 12519019 PPUBIRD1_0782 Pseudomonas putida BIRD-1 glutamate racemase YP_005928673.1 886277 D 931281 CDS YP_005928674.1 386010397 12519020 887181..887699 1 NC_017530.1 hypothetical protein 887699 12519020 PPUBIRD1_0783 Pseudomonas putida BIRD-1 hypothetical protein YP_005928674.1 887181 D 931281 CDS YP_005928675.1 386010398 12519021 complement(887814..888443) 1 NC_017530.1 hypothetical protein 888443 12519021 PPUBIRD1_0784 Pseudomonas putida BIRD-1 hypothetical protein YP_005928675.1 887814 R 931281 CDS YP_005928676.1 386010399 12519022 complement(888509..889951) 1 NC_017530.1 deoxyribodipyrimidine photo-lyase; PhrB 889951 phrB 12519022 phrB Pseudomonas putida BIRD-1 PhrB YP_005928676.1 888509 R 931281 CDS YP_005928677.1 386010400 12519023 complement(889942..890826) 1 NC_017530.1 MerR family transcriptional regulator 890826 12519023 PPUBIRD1_0786 Pseudomonas putida BIRD-1 MerR family transcriptional regulator YP_005928677.1 889942 R 931281 CDS YP_005928678.1 386010401 12519024 complement(890831..891799) 1 NC_017530.1 hypothetical protein 891799 12519024 PPUBIRD1_0787 Pseudomonas putida BIRD-1 hypothetical protein YP_005928678.1 890831 R 931281 CDS YP_005928679.1 386010402 12519025 complement(891903..892889) 1 NC_017530.1 hypothetical protein 892889 12519025 PPUBIRD1_0788 Pseudomonas putida BIRD-1 hypothetical protein YP_005928679.1 891903 R 931281 CDS YP_005928680.1 386010403 12519026 893076..893981 1 NC_017530.1 NAD-dependent epimerase/dehydratase 893981 12519026 PPUBIRD1_0789 Pseudomonas putida BIRD-1 NAD-dependent epimerase/dehydratase YP_005928680.1 893076 D 931281 CDS YP_005928681.1 386010404 12519027 893995..895011 1 NC_017530.1 Ferrochelatase; HemH 895011 hemH 12519027 hemH Pseudomonas putida BIRD-1 HemH YP_005928681.1 893995 D 931281 CDS YP_005928682.1 386010405 12519028 complement(895047..896312) 1 NC_017530.1 uracil-xanthine permease; protein UraA 896312 uraA 12519028 uraA Pseudomonas putida BIRD-1 protein UraA YP_005928682.1 895047 R 931281 CDS YP_005928683.1 386010406 12519029 complement(896315..896953) 1 NC_017530.1 Uracil phosphoribosyltransferase; hypothetical protein 896953 upp 12519029 upp Pseudomonas putida BIRD-1 hypothetical protein YP_005928683.1 896315 R 931281 CDS YP_005928684.1 386010407 12519030 897116..897673 1 NC_017530.1 Hypoxanthine-guanine phosphoribosyltransferase 897673 12519030 PPUBIRD1_0793 Pseudomonas putida BIRD-1 Hypoxanthine-guanine phosphoribosyltransferase YP_005928684.1 897116 D 931281 CDS YP_005928685.1 386010408 12519031 897676..898149 1 NC_017530.1 hypothetical protein 898149 12519031 PPUBIRD1_0794 Pseudomonas putida BIRD-1 hypothetical protein YP_005928685.1 897676 D 931281 CDS YP_005928686.1 386010409 12519032 898201..898671 1 NC_017530.1 hypothetical protein 898671 12519032 PPUBIRD1_0795 Pseudomonas putida BIRD-1 hypothetical protein YP_005928686.1 898201 D 931281 CDS YP_005928687.1 386010410 12519033 898740..899030 1 NC_017530.1 hypothetical protein 899030 12519033 PPUBIRD1_0796 Pseudomonas putida BIRD-1 hypothetical protein YP_005928687.1 898740 D 931281 CDS YP_005928688.1 386010411 12519034 complement(899208..900716) 1 NC_017530.1 Malate dehydrogenase (quinone) 1; Mqo1 900716 mqo1 12519034 mqo1 Pseudomonas putida BIRD-1 Mqo1 YP_005928688.1 899208 R 931281 CDS YP_005928689.1 386010412 12519035 complement(901318..901551) 1 NC_017530.1 hypothetical protein 901551 12519035 PPUBIRD1_0798 Pseudomonas putida BIRD-1 hypothetical protein YP_005928689.1 901318 R 931281 CDS YP_005928690.1 386010413 12519036 901697..902281 1 NC_017530.1 Putative lipoprotein 902281 12519036 PPUBIRD1_0799 Pseudomonas putida BIRD-1 Putative lipoprotein YP_005928690.1 901697 D 931281 CDS YP_005928691.1 386010414 12519037 complement(902356..902562) 1 NC_017530.1 hypothetical protein 902562 12519037 PPUBIRD1_0800 Pseudomonas putida BIRD-1 hypothetical protein YP_005928691.1 902356 R 931281 CDS YP_005928692.1 386010415 12519038 902723..902983 1 NC_017530.1 hypothetical protein 902983 12519038 PPUBIRD1_0801 Pseudomonas putida BIRD-1 hypothetical protein YP_005928692.1 902723 D 931281 CDS YP_005928693.1 386010416 12519039 complement(903019..904188) 1 NC_017530.1 phospholipid/glycerol acyltransferase 904188 12519039 PPUBIRD1_0802 Pseudomonas putida BIRD-1 phospholipid/glycerol acyltransferase YP_005928693.1 903019 R 931281 CDS YP_005928694.1 386010417 12519040 904311..904496 1 NC_017530.1 hypothetical protein 904496 12519040 PPUBIRD1_0803 Pseudomonas putida BIRD-1 hypothetical protein YP_005928694.1 904311 D 931281 CDS YP_005928695.1 386010418 12519041 904496..904756 1 NC_017530.1 hypothetical protein 904756 12519041 PPUBIRD1_0804 Pseudomonas putida BIRD-1 hypothetical protein YP_005928695.1 904496 D 931281 CDS YP_005928696.1 386010419 12519042 904772..905392 1 NC_017530.1 hypothetical protein 905392 12519042 PPUBIRD1_0805 Pseudomonas putida BIRD-1 hypothetical protein YP_005928696.1 904772 D 931281 CDS YP_005928697.1 386010420 12519043 905574..906392 1 NC_017530.1 hypothetical protein 906392 12519043 PPUBIRD1_0806 Pseudomonas putida BIRD-1 hypothetical protein YP_005928697.1 905574 D 931281 CDS YP_005928698.1 386010421 12519044 complement(906435..907019) 1 NC_017530.1 hypothetical protein 907019 12519044 PPUBIRD1_0807 Pseudomonas putida BIRD-1 hypothetical protein YP_005928698.1 906435 R 931281 CDS YP_005928699.1 386010422 12519045 complement(907288..908286) 1 NC_017530.1 Ribosomal RNA small subunit methyltransferase C 908286 12519045 PPUBIRD1_0808 Pseudomonas putida BIRD-1 Ribosomal RNA small subunit methyltransferase C YP_005928699.1 907288 R 931281 CDS YP_005928700.1 386010423 12519046 complement(908341..909306) 1 NC_017530.1 glycerate dehydrogenase; HprA 909306 hprA 12519046 hprA Pseudomonas putida BIRD-1 HprA YP_005928700.1 908341 R 931281 CDS YP_005928701.1 386010424 12519047 909589..911271 1 NC_017530.1 Acyl-CoA synthetase 911271 12519047 PPUBIRD1_0810 Pseudomonas putida BIRD-1 Acyl-CoA synthetase YP_005928701.1 909589 D 931281 CDS YP_005928702.1 386010425 12519048 911603..913489 1 NC_017530.1 hypothetical protein 913489 12519048 PPUBIRD1_0811 Pseudomonas putida BIRD-1 hypothetical protein YP_005928702.1 911603 D 931281 CDS YP_005928703.1 386010426 12519049 913515..914879 1 NC_017530.1 hypothetical protein 914879 12519049 PPUBIRD1_0812 Pseudomonas putida BIRD-1 hypothetical protein YP_005928703.1 913515 D 931281 CDS YP_005928704.1 386010427 12519050 915214..917931 1 NC_017530.1 LuxR family transcriptional regulator 917931 12519050 PPUBIRD1_0813 Pseudomonas putida BIRD-1 LuxR family transcriptional regulator YP_005928704.1 915214 D 931281 CDS YP_005928705.1 386010428 12519051 917965..919698 1 NC_017530.1 Response regulator/TPR domain-containing protein 919698 12519051 PPUBIRD1_0814 Pseudomonas putida BIRD-1 Response regulator/TPR domain-containing protein YP_005928705.1 917965 D 931281 CDS YP_005928706.1 386010429 12519052 919695..920387 1 NC_017530.1 Histidine kinase 920387 12519052 PPUBIRD1_0815 Pseudomonas putida BIRD-1 Histidine kinase YP_005928706.1 919695 D 931281 CDS YP_005928707.1 386010430 12519053 920581..920835 1 NC_017530.1 PemI-like protein 920835 12519053 PPUBIRD1_0816 Pseudomonas putida BIRD-1 PemI-like protein YP_005928707.1 920581 D 931281 CDS YP_005928708.1 386010431 12519054 920832..921179 1 NC_017530.1 Toxin ChpB 921179 12519054 PPUBIRD1_0817 Pseudomonas putida BIRD-1 Toxin ChpB YP_005928708.1 920832 D 931281 CDS YP_005928709.1 386010432 12519055 921198..921842 1 NC_017530.1 Beta-lactamase domain protein 921842 12519055 PPUBIRD1_0818 Pseudomonas putida BIRD-1 Beta-lactamase domain protein YP_005928709.1 921198 D 931281 CDS YP_005928710.1 386010433 12519056 921952..922671 1 NC_017530.1 OmpA/MotB domain-containing protein 922671 12519056 PPUBIRD1_0819 Pseudomonas putida BIRD-1 OmpA/MotB domain-containing protein YP_005928710.1 921952 D 931281 CDS YP_005928711.1 386010434 12519057 complement(922750..924837) 1 NC_017530.1 phosphate acetyltransferase; Pta 924837 pta 12519057 pta Pseudomonas putida BIRD-1 Pta YP_005928711.1 922750 R 931281 CDS YP_005928712.1 386010435 12519058 925170..925655 1 NC_017530.1 peptidyl-prolyl cis-trans isomerase, FKBP-type; SlyD protein 925655 slyD 12519058 slyD Pseudomonas putida BIRD-1 SlyD protein YP_005928712.1 925170 D 931281 CDS YP_005928713.1 386010436 12519059 925801..926283 1 NC_017530.1 Glutathione peroxidase, putative 926283 12519059 PPUBIRD1_0822 Pseudomonas putida BIRD-1 Glutathione peroxidase, putative YP_005928713.1 925801 D 931281 CDS YP_005928714.1 386010437 12519060 complement(926347..927537) 1 NC_017530.1 Glycosyl transferase, group 1 family protein 927537 12519060 PPUBIRD1_0823 Pseudomonas putida BIRD-1 Glycosyl transferase, group 1 family protein YP_005928714.1 926347 R 931281 CDS YP_005928715.1 386010438 12519061 927716..929032 1 NC_017530.1 methyl-accepting chemotaxis sensory transducer 929032 12519061 PPUBIRD1_0824 Pseudomonas putida BIRD-1 methyl-accepting chemotaxis sensory transducer YP_005928715.1 927716 D 931281 CDS YP_005928716.1 386010439 12519062 929258..929446 1 NC_017530.1 hypothetical protein 929446 12519062 PPUBIRD1_0825 Pseudomonas putida BIRD-1 hypothetical protein YP_005928716.1 929258 D 931281 CDS YP_005928717.1 386010440 12519063 929447..930301 1 NC_017530.1 hypothetical protein 930301 12519063 PPUBIRD1_0826 Pseudomonas putida BIRD-1 hypothetical protein YP_005928717.1 929447 D 931281 CDS YP_005928718.1 386010441 12519064 931085..931240 1 NC_017530.1 hypothetical protein 931240 12519064 PPUBIRD1_0827 Pseudomonas putida BIRD-1 hypothetical protein YP_005928718.1 931085 D 931281 CDS YP_005928719.1 386010442 12519065 complement(931285..932013) 1 NC_017530.1 Putative sulfate transport protein CysZ 932013 12519065 PPUBIRD1_0828 Pseudomonas putida BIRD-1 Putative sulfate transport protein CysZ YP_005928719.1 931285 R 931281 CDS YP_005928720.1 386010443 12519066 932343..933305 1 NC_017530.1 thioredoxin reductase; protein TrxB 933305 trxB 12519066 trxB Pseudomonas putida BIRD-1 protein TrxB YP_005928720.1 932343 D 931281 CDS YP_005928721.1 386010444 12519067 complement(933381..934229) 1 NC_017530.1 nicotinate-nucleotide pyrophosphorylase; NadC 934229 nadC 12519067 nadC Pseudomonas putida BIRD-1 NadC YP_005928721.1 933381 R 931281 CDS YP_005928722.1 386010445 12519068 934473..936632 1 NC_017530.1 hypothetical protein 936632 12519068 PPUBIRD1_0832 Pseudomonas putida BIRD-1 hypothetical protein YP_005928722.1 934473 D 931281 CDS YP_005928723.1 386010446 12519069 936721..937293 1 NC_017530.1 N-acetyl-anhydromuranmyl-L-alanine amidase; AmpD 937293 ampD 12519069 ampD Pseudomonas putida BIRD-1 AmpD YP_005928723.1 936721 D 931281 CDS YP_005928724.1 386010447 12519070 937290..938120 1 NC_017530.1 Signaling modulator of AmpD, AmpE 938120 12519070 PPUBIRD1_0834 Pseudomonas putida BIRD-1 Signaling modulator of AmpD, AmpE YP_005928724.1 937290 D 931281 CDS YP_005928725.1 386010448 12519071 complement(938165..938941) 1 NC_017530.1 TatD family deoxyribonuclease 938941 12519071 PPUBIRD1_0835 Pseudomonas putida BIRD-1 TatD family deoxyribonuclease YP_005928725.1 938165 R 931281 CDS YP_005928726.1 386010449 12519072 complement(938944..939510) 1 NC_017530.1 DNA-binding transcriptional regulator FruR 939510 12519072 PPUBIRD1_0836 Pseudomonas putida BIRD-1 DNA-binding transcriptional regulator FruR YP_005928726.1 938944 R 931281 CDS YP_005928727.1 386010450 12519073 complement(939654..939938) 1 NC_017530.1 DNA-binding transcriptional regulator FruR 939938 12519073 PPUBIRD1_0837 Pseudomonas putida BIRD-1 DNA-binding transcriptional regulator FruR YP_005928727.1 939654 R 931281 CDS YP_005928728.1 386010451 12519074 940223..943075 1 NC_017530.1 phosphoenolpyruvate-protein phosphotransferase; FruB 943075 fruB 12519074 fruB Pseudomonas putida BIRD-1 FruB YP_005928728.1 940223 D 931281 CDS YP_005928729.1 386010452 12519075 943076..944023 1 NC_017530.1 1-phosphofructokinase; FruK 944023 fruK 12519075 fruK Pseudomonas putida BIRD-1 FruK YP_005928729.1 943076 D 931281 CDS YP_005928730.1 386010453 12519076 944020..945762 1 NC_017530.1 PTS system fructose subfamily transporter subunit IIC 945762 12519076 PPUBIRD1_0840 Pseudomonas putida BIRD-1 PTS system fructose subfamily transporter subunit IIC YP_005928730.1 944020 D 931281 CDS YP_005928731.1 386010454 12519077 complement(945910..946131) 1 NC_017530.1 hypothetical protein 946131 12519077 PPUBIRD1_0841 Pseudomonas putida BIRD-1 hypothetical protein YP_005928731.1 945910 R 931281 CDS YP_005928732.1 386010455 12519078 946333..946809 1 NC_017530.1 hypothetical protein 946809 12519078 PPUBIRD1_0842 Pseudomonas putida BIRD-1 hypothetical protein YP_005928732.1 946333 D 931281 CDS YP_005928733.1 386010456 12519079 complement(946806..948296) 1 NC_017530.1 diguanylate cyclase 948296 12519079 PPUBIRD1_0843 Pseudomonas putida BIRD-1 diguanylate cyclase YP_005928733.1 946806 R 931281 CDS YP_005928734.1 386010457 12519080 complement(948530..949864) 1 NC_017530.1 Outer membrane porin 949864 12519080 PPUBIRD1_0844 Pseudomonas putida BIRD-1 Outer membrane porin YP_005928734.1 948530 R 931281 CDS YP_005928735.1 386010458 12519081 complement(950070..950294) 1 NC_017530.1 hypothetical protein 950294 12519081 PPUBIRD1_0845 Pseudomonas putida BIRD-1 hypothetical protein YP_005928735.1 950070 R 931281 CDS YP_005928736.1 386010459 12519082 complement(950495..951229) 1 NC_017530.1 hypothetical protein 951229 12519082 PPUBIRD1_0846 Pseudomonas putida BIRD-1 hypothetical protein YP_005928736.1 950495 R 931281 CDS YP_005928737.1 386010460 12519083 complement(951226..951537) 1 NC_017530.1 hypothetical protein 951537 12519083 PPUBIRD1_0847 Pseudomonas putida BIRD-1 hypothetical protein YP_005928737.1 951226 R 931281 CDS YP_005928738.1 386010461 12519084 complement(951626..952525) 1 NC_017530.1 chemotaxis protein CheV; CheV 952525 cheV 12519084 cheV Pseudomonas putida BIRD-1 CheV YP_005928738.1 951626 R 931281 CDS YP_005928739.1 386010462 12519085 complement(952673..953857) 1 NC_017530.1 HlyD family type I secretion membrane fusion protein 953857 12519085 PPUBIRD1_0849 Pseudomonas putida BIRD-1 HlyD family type I secretion membrane fusion protein YP_005928739.1 952673 R 931281 CDS YP_005928740.1 386010463 12519086 complement(953854..956022) 1 NC_017530.1 ABC transporter 956022 12519086 PPUBIRD1_0850 Pseudomonas putida BIRD-1 ABC transporter YP_005928740.1 953854 R 931281 CDS YP_005928741.1 386010464 12519087 complement(956019..957455) 1 NC_017530.1 TolC family type I secretion outer membrane protein 957455 12519087 PPUBIRD1_0851 Pseudomonas putida BIRD-1 TolC family type I secretion outer membrane protein YP_005928741.1 956019 R 931281 CDS YP_005928742.1 386010465 12519088 complement(957519..976451) 1 NC_017530.1 Surface adhesion protein, putative 976451 12519088 PPUBIRD1_0852 Pseudomonas putida BIRD-1 Surface adhesion protein, putative YP_005928742.1 957519 R 931281 CDS YP_005928743.1 386010466 12519089 complement(976642..978198) 1 NC_017530.1 Anaerobic nitric oxide reductase transcription regulator 978198 12519089 PPUBIRD1_0853 Pseudomonas putida BIRD-1 Anaerobic nitric oxide reductase transcription regulator YP_005928743.1 976642 R 931281 CDS YP_005928744.1 386010467 12519090 978353..979531 1 NC_017530.1 flavohemoprotein 979531 12519090 PPUBIRD1_0854 Pseudomonas putida BIRD-1 flavohemoprotein YP_005928744.1 978353 D 931281 CDS YP_005928745.1 386010468 12519091 979988..980494 1 NC_017530.1 Disulfide bond formation protein B 1; DsbB_2 980494 dsbB_2 12519091 dsbB_2 Pseudomonas putida BIRD-1 DsbB_2 YP_005928745.1 979988 D 931281 CDS YP_005928746.1 386010469 12519092 981105..981995 1 NC_017530.1 ubiquinol oxidase subunit 2; CyoA 981995 cyoA 12519092 cyoA Pseudomonas putida BIRD-1 CyoA YP_005928746.1 981105 D 931281 CDS YP_005928747.1 386010470 12519093 981999..984017 1 NC_017530.1 Ubiquinol oxidase subunit 1; CyoB 984017 cyoB 12519093 cyoB Pseudomonas putida BIRD-1 CyoB YP_005928747.1 981999 D 931281 CDS YP_005928748.1 386010471 12519094 984036..984644 1 NC_017530.1 Cytochrome o ubiquinol oxidase subunit 3; protein CyoC 984644 cyoC 12519094 cyoC Pseudomonas putida BIRD-1 protein CyoC YP_005928748.1 984036 D 931281 CDS YP_005928749.1 386010472 12519095 984644..984976 1 NC_017530.1 Cytochrome o ubiquinol oxidase protein cyoD; CyoD protein 984976 cyoD 12519095 cyoD Pseudomonas putida BIRD-1 CyoD protein YP_005928749.1 984644 D 931281 CDS YP_005928750.1 386010473 12519096 984988..985875 1 NC_017530.1 Protoheme IX farnesyltransferase 2; CyoE 985875 cyoE 12519096 cyoE Pseudomonas putida BIRD-1 CyoE YP_005928750.1 984988 D 931281 CDS YP_005928751.1 386010474 12519097 986184..987392 1 NC_017530.1 aminotransferase yfdZ 987392 12519097 PPUBIRD1_0861 Pseudomonas putida BIRD-1 aminotransferase yfdZ YP_005928751.1 986184 D 931281 CDS YP_005928752.1 386010475 12519098 987506..988633 1 NC_017530.1 hypothetical protein 988633 12519098 PPUBIRD1_0862 Pseudomonas putida BIRD-1 hypothetical protein YP_005928752.1 987506 D 931281 CDS YP_005928753.1 386010476 12519099 988891..989178 1 NC_017530.1 hypothetical protein 989178 12519099 PPUBIRD1_0863 Pseudomonas putida BIRD-1 hypothetical protein YP_005928753.1 988891 D 931281 CDS YP_005928754.1 386010477 12519100 990325..990888 1 NC_017530.1 Acetyltransferase 990888 12519100 PPUBIRD1_0865 Pseudomonas putida BIRD-1 Acetyltransferase YP_005928754.1 990325 D 931281 CDS YP_005928755.1 386010478 12519101 990945..991472 1 NC_017530.1 ECF subfamily RNA polymerase sigma-24 factor 991472 12519101 PPUBIRD1_0866 Pseudomonas putida BIRD-1 ECF subfamily RNA polymerase sigma-24 factor YP_005928755.1 990945 D 931281 CDS YP_005928756.1 386010479 12519102 991469..992440 1 NC_017530.1 Anti-FecI sigma factor, FecR 992440 12519102 PPUBIRD1_0867 Pseudomonas putida BIRD-1 Anti-FecI sigma factor, FecR YP_005928756.1 991469 D 931281 CDS YP_005928757.1 386010480 12519103 992517..995042 1 NC_017530.1 TonB-dependent siderophore receptor 995042 12519103 PPUBIRD1_0868 Pseudomonas putida BIRD-1 TonB-dependent siderophore receptor YP_005928757.1 992517 D 931281 CDS YP_005928758.1 386010481 12519104 995110..995649 1 NC_017530.1 hypothetical protein 995649 12519104 PPUBIRD1_0869 Pseudomonas putida BIRD-1 hypothetical protein YP_005928758.1 995110 D 931281 CDS YP_005928759.1 386010482 12519105 995670..996056 1 NC_017530.1 hypothetical protein 996056 12519105 PPUBIRD1_0870 Pseudomonas putida BIRD-1 hypothetical protein YP_005928759.1 995670 D 931281 CDS YP_005928760.1 386010483 12519106 complement(996192..997304) 1 NC_017530.1 TRNA 2-selenouridine synthase 997304 12519106 PPUBIRD1_0871 Pseudomonas putida BIRD-1 TRNA 2-selenouridine synthase YP_005928760.1 996192 R 931281 CDS YP_005928761.1 386010484 12519107 complement(997304..998338) 1 NC_017530.1 Selenide, water dikinase 998338 12519107 PPUBIRD1_0872 Pseudomonas putida BIRD-1 Selenide, water dikinase YP_005928761.1 997304 R 931281 CDS YP_005928762.1 386010485 12519108 998465..999319 1 NC_017530.1 Phosphonate ABC transporter periplasmic phosphonate-binding protein 999319 12519108 PPUBIRD1_0873 Pseudomonas putida BIRD-1 Phosphonate ABC transporter periplasmic phosphonate-binding protein YP_005928762.1 998465 D 931281 CDS YP_005928763.1 386010486 12519109 999316..1000125 1 NC_017530.1 Phosphonates import ATP-binding protein phnC 1000125 12519109 PPUBIRD1_0874 Pseudomonas putida BIRD-1 Phosphonates import ATP-binding protein phnC YP_005928763.1 999316 D 931281 CDS YP_005928764.1 386010487 12519110 1000119..1000946 1 NC_017530.1 Phosphonate ABC transporter, inner membrane subunit 1000946 12519110 PPUBIRD1_0875 Pseudomonas putida BIRD-1 Phosphonate ABC transporter, inner membrane subunit YP_005928764.1 1000119 D 931281 CDS YP_005928765.1 386010488 12519111 1000943..1001710 1 NC_017530.1 Phosphonate ABC transporter, inner membrane subunit 1001710 12519111 PPUBIRD1_0876 Pseudomonas putida BIRD-1 Phosphonate ABC transporter, inner membrane subunit YP_005928765.1 1000943 D 931281 CDS YP_005928766.1 386010489 12519112 complement(1001747..1002640) 1 NC_017530.1 hypothetical protein 1002640 12519112 PPUBIRD1_0877 Pseudomonas putida BIRD-1 hypothetical protein YP_005928766.1 1001747 R 931281 CDS YP_005928767.1 386010490 12519113 complement(1003268..1003747) 1 NC_017530.1 N-acetyltransferase GCN5 1003747 12519113 PPUBIRD1_0878 Pseudomonas putida BIRD-1 N-acetyltransferase GCN5 YP_005928767.1 1003268 R 931281 CDS YP_005928768.1 386010491 12519114 complement(1003918..1004469) 1 NC_017530.1 hypothetical protein 1004469 12519114 PPUBIRD1_0879 Pseudomonas putida BIRD-1 hypothetical protein YP_005928768.1 1003918 R 931281 CDS YP_005928769.1 386010492 12519115 1004907..1005329 1 NC_017530.1 Glyoxalase/bleomycin resistance protein/dioxygenase 1005329 12519115 PPUBIRD1_0880 Pseudomonas putida BIRD-1 Glyoxalase/bleomycin resistance protein/dioxygenase YP_005928769.1 1004907 D 931281 CDS YP_005928770.1 386010493 12519116 1005914..1007305 1 NC_017530.1 FAD dependent oxidoreductase 1007305 12519116 PPUBIRD1_0881 Pseudomonas putida BIRD-1 FAD dependent oxidoreductase YP_005928770.1 1005914 D 931281 CDS YP_005928771.1 386010494 12519117 1007385..1007882 1 NC_017530.1 endoribonuclease L-PSP 1007882 12519117 PPUBIRD1_0882 Pseudomonas putida BIRD-1 endoribonuclease L-PSP YP_005928771.1 1007385 D 931281 CDS YP_005928772.1 386010495 12519119 1008146..1009195 1 NC_017530.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; protein QueA 1009195 queA 12519119 queA Pseudomonas putida BIRD-1 protein QueA YP_005928772.1 1008146 D 931281 CDS YP_005928773.1 386010496 12519120 1009210..1010325 1 NC_017530.1 Queuine tRNA-ribosyltransferase; hypothetical protein 1010325 tgt 12519120 tgt Pseudomonas putida BIRD-1 hypothetical protein YP_005928773.1 1009210 D 931281 CDS YP_005928774.1 386010497 12519121 1010369..1010704 1 NC_017530.1 preprotein translocase subunit YajC; YajC 1010704 yajC 12519121 yajC Pseudomonas putida BIRD-1 YajC YP_005928774.1 1010369 D 931281 CDS YP_005928775.1 386010498 12519122 1010768..1012630 1 NC_017530.1 Protein-export membrane protein secD; protein SecD 1012630 secD 12519122 secD Pseudomonas putida BIRD-1 protein SecD YP_005928775.1 1010768 D 931281 CDS YP_005928776.1 386010499 12519123 1012641..1013549 1 NC_017530.1 preprotein translocase subunit SecF; SecF 1013549 secF 12519123 secF Pseudomonas putida BIRD-1 SecF YP_005928776.1 1012641 D 931281 CDS YP_005928777.1 386010500 12519124 1013671..1014213 1 NC_017530.1 hypothetical protein 1014213 12519124 PPUBIRD1_0888 Pseudomonas putida BIRD-1 hypothetical protein YP_005928777.1 1013671 D 931281 CDS YP_005928778.1 386010501 12519125 complement(1014377..1015195) 1 NC_017530.1 inositol-phosphate phosphatase; protein SuhB 1015195 suhB 12519125 suhB Pseudomonas putida BIRD-1 protein SuhB YP_005928778.1 1014377 R 931281 CDS YP_005928779.1 386010502 12519126 1015251..1016102 1 NC_017530.1 RNA methyltransferase 1016102 12519126 PPUBIRD1_0890 Pseudomonas putida BIRD-1 RNA methyltransferase YP_005928779.1 1015251 D 931281 CDS YP_005928780.1 386010503 12519127 1016106..1016891 1 NC_017530.1 serine O-acetyltransferase; protein CysE 1016891 cysE 12519127 cysE Pseudomonas putida BIRD-1 protein CysE YP_005928780.1 1016106 D 931281 CDS YP_005928781.1 386010504 12519128 1017101..1017562 1 NC_017530.1 BadM/Rrf2 family transcriptional regulator 1017562 12519128 PPUBIRD1_0892 Pseudomonas putida BIRD-1 BadM/Rrf2 family transcriptional regulator YP_005928781.1 1017101 D 931281 CDS YP_005928782.1 386010505 12519129 1017608..1018822 1 NC_017530.1 Cysteine desulfurase; IscS 1018822 iscS 12519129 iscS Pseudomonas putida BIRD-1 IscS YP_005928782.1 1017608 D 931281 CDS YP_005928783.1 386010506 12519130 1018869..1019255 1 NC_017530.1 scaffold protein; IscU 1019255 iscU 12519130 iscU Pseudomonas putida BIRD-1 IscU YP_005928783.1 1018869 D 931281 CDS YP_005928784.1 386010507 12519131 1019284..1019607 1 NC_017530.1 iron-sulfur cluster assembly protein IscA; IscA 1019607 iscA 12519131 iscA Pseudomonas putida BIRD-1 IscA YP_005928784.1 1019284 D 931281 CDS YP_005928785.1 386010508 12519132 1019616..1020137 1 NC_017530.1 Co-chaperone protein hscB homolog; HscB 1020137 hscB 12519132 hscB Pseudomonas putida BIRD-1 HscB YP_005928785.1 1019616 D 931281 CDS YP_005928786.1 386010509 12519133 1020181..1022043 1 NC_017530.1 Chaperone protein hscA homolog; HscA 1022043 hscA 12519133 hscA Pseudomonas putida BIRD-1 HscA YP_005928786.1 1020181 D 931281 CDS YP_005928787.1 386010510 12519134 1022047..1022388 1 NC_017530.1 ferredoxin, 2Fe-2S type, ISC system; FdxB 1022388 fdxB 12519134 fdxB Pseudomonas putida BIRD-1 FdxB YP_005928787.1 1022047 D 931281 CDS YP_005928788.1 386010511 12519135 1022399..1022599 1 NC_017530.1 hypothetical protein 1022599 12519135 PPUBIRD1_0899 Pseudomonas putida BIRD-1 hypothetical protein YP_005928788.1 1022399 D 931281 CDS YP_005928789.1 386010512 12519136 1022688..1023113 1 NC_017530.1 Nucleoside diphosphate kinase; hypothetical protein 1023113 ndk 12519136 ndk Pseudomonas putida BIRD-1 hypothetical protein YP_005928789.1 1022688 D 931281 CDS YP_005928790.1 386010513 12519137 1023142..1024287 1 NC_017530.1 ribosomal RNA large subunit methyltransferase N 1024287 12519137 PPUBIRD1_0901 Pseudomonas putida BIRD-1 ribosomal RNA large subunit methyltransferase N YP_005928790.1 1023142 D 931281 CDS YP_005928791.1 386010514 12519138 1024302..1025063 1 NC_017530.1 type IV pilus biogenesis/stability protein PilW; PilF 1025063 pilF 12519138 pilF Pseudomonas putida BIRD-1 PilF YP_005928791.1 1024302 D 931281 CDS YP_005928792.1 386010515 12519139 1025060..1026070 1 NC_017530.1 Cro/CI family transcriptional regulator 1026070 12519139 PPUBIRD1_0903 Pseudomonas putida BIRD-1 Cro/CI family transcriptional regulator YP_005928792.1 1025060 D 931281 CDS YP_005928793.1 386010516 12519140 1026074..1027183 1 NC_017530.1 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; protein IspG 1027183 ispG 12519140 ispG Pseudomonas putida BIRD-1 protein IspG YP_005928793.1 1026074 D 931281 CDS YP_005928794.1 386010517 12519141 1027209..1028498 1 NC_017530.1 Histidyl-tRNA synthetase; protein HisS 1028498 hisS 12519141 hisS Pseudomonas putida BIRD-1 protein HisS YP_005928794.1 1027209 D 931281 CDS YP_005928795.1 386010518 12519142 1028538..1029179 1 NC_017530.1 hypothetical protein 1029179 12519142 PPUBIRD1_0906 Pseudomonas putida BIRD-1 hypothetical protein YP_005928795.1 1028538 D 931281 CDS YP_005928796.1 386010519 12519143 1029180..1030322 1 NC_017530.1 Outer membrane assembly lipoprotein YfgL 1030322 12519143 PPUBIRD1_0907 Pseudomonas putida BIRD-1 Outer membrane assembly lipoprotein YfgL YP_005928796.1 1029180 D 931281 CDS YP_005928797.1 386010520 12519144 1030436..1031899 1 NC_017530.1 GTP-binding protein engA; protein EngA 1031899 engA 12519144 engA Pseudomonas putida BIRD-1 protein EngA YP_005928797.1 1030436 D 931281 CDS YP_005928798.1 386010521 12519145 1032051..1033199 1 NC_017530.1 Putative aminotransferase 1033199 12519145 PPUBIRD1_0909 Pseudomonas putida BIRD-1 Putative aminotransferase YP_005928798.1 1032051 D 931281 CDS YP_005928799.1 386010522 12519146 1033187..1033978 1 NC_017530.1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1033978 12519146 PPUBIRD1_0910 Pseudomonas putida BIRD-1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_005928799.1 1033187 D 931281 CDS YP_005928800.1 386010523 12519147 complement(1034364..1036916) 1 NC_017530.1 Flavodoxin/nitric oxide synthase 1036916 12519147 PPUBIRD1_0911 Pseudomonas putida BIRD-1 Flavodoxin/nitric oxide synthase YP_005928800.1 1034364 R 931281 CDS YP_005928801.1 386010524 12519148 complement(1037145..1039436) 1 NC_017530.1 TonB-dependent siderophore receptor 1039436 12519148 PPUBIRD1_0912 Pseudomonas putida BIRD-1 TonB-dependent siderophore receptor YP_005928801.1 1037145 R 931281 CDS YP_005928802.1 386010525 12519149 1039658..1040338 1 NC_017530.1 PKHD-type hydroxylase 1040338 12519149 PPUBIRD1_0913 Pseudomonas putida BIRD-1 PKHD-type hydroxylase YP_005928802.1 1039658 D 931281 CDS YP_005928803.1 386010526 12519150 1040342..1041091 1 NC_017530.1 Sel1 domain-containing protein 1041091 12519150 PPUBIRD1_0914 Pseudomonas putida BIRD-1 Sel1 domain-containing protein YP_005928803.1 1040342 D 931281 CDS YP_005928804.1 386010527 12519151 complement(1041409..1042572) 1 NC_017530.1 bifunctional; Ornithine decarboxylase 1042572 12519151 PPUBIRD1_0915 Pseudomonas putida BIRD-1 Ornithine decarboxylase YP_005928804.1 1041409 R 931281 CDS YP_005928805.1 386010528 12519152 1043067..1043564 1 NC_017530.1 ECF subfamily RNA polymerase sigma-24 factor 1043564 12519152 PPUBIRD1_0916 Pseudomonas putida BIRD-1 ECF subfamily RNA polymerase sigma-24 factor YP_005928805.1 1043067 D 931281 CDS YP_005928806.1 386010529 12519153 1043585..1044547 1 NC_017530.1 Anti-FecI sigma factor, FecR 1044547 12519153 PPUBIRD1_0917 Pseudomonas putida BIRD-1 Anti-FecI sigma factor, FecR YP_005928806.1 1043585 D 931281 CDS YP_005928807.1 386010530 12519154 1044656..1047085 1 NC_017530.1 FecA-like outer membrane receptor 1047085 12519154 PPUBIRD1_0918 Pseudomonas putida BIRD-1 FecA-like outer membrane receptor YP_005928807.1 1044656 D 931281 CDS YP_005928808.1 386010531 12519155 complement(1047320..1048477) 1 NC_017530.1 Glycine betaine/L-proline ABC transporter, ATPase subunit 1048477 12519155 PPUBIRD1_0919 Pseudomonas putida BIRD-1 Glycine betaine/L-proline ABC transporter, ATPase subunit YP_005928808.1 1047320 R 931281 CDS YP_005928809.1 386010532 12519156 complement(1048474..1049127) 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 1049127 12519156 PPUBIRD1_0920 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005928809.1 1048474 R 931281 CDS YP_005928810.1 386010533 12519157 complement(1049124..1050035) 1 NC_017530.1 glycine betaine ABC transporter substrate-binding protein 1050035 12519157 PPUBIRD1_0921 Pseudomonas putida BIRD-1 glycine betaine ABC transporter substrate-binding protein YP_005928810.1 1049124 R 931281 CDS YP_005928811.1 386010534 12519158 complement(1050049..1050762) 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 1050762 12519158 PPUBIRD1_0922 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005928811.1 1050049 R 931281 CDS YP_005928812.1 386010535 12519159 1051320..1052903 1 NC_017530.1 Peptide chain release factor 3; protein PrfC 1052903 prfC 12519159 prfC Pseudomonas putida BIRD-1 protein PrfC YP_005928812.1 1051320 D 931281 CDS YP_005928813.1 386010536 12519160 complement(1053035..1054114) 1 NC_017530.1 Extracellular solute-binding protein 1054114 12519160 PPUBIRD1_0924 Pseudomonas putida BIRD-1 Extracellular solute-binding protein YP_005928813.1 1053035 R 931281 CDS YP_005928814.1 386010537 12519161 complement(1054167..1054508) 1 NC_017530.1 Protein of unknown function DUF861, cupin_3; hypothetical protein 1054508 12519161 PPUBIRD1_0925 Pseudomonas putida BIRD-1 hypothetical protein YP_005928814.1 1054167 R 931281 CDS YP_005928815.1 386010538 12519162 complement(1054542..1055948) 1 NC_017530.1 FAD dependent oxidoreductase 1055948 12519162 PPUBIRD1_0926 Pseudomonas putida BIRD-1 FAD dependent oxidoreductase YP_005928815.1 1054542 R 931281 CDS YP_005928816.1 386010539 12519163 complement(1056013..1056837) 1 NC_017530.1 Helix-turn-helix domain-containing protein 1056837 12519163 PPUBIRD1_0927 Pseudomonas putida BIRD-1 Helix-turn-helix domain-containing protein YP_005928816.1 1056013 R 931281 CDS YP_005928817.1 386010540 12519164 1057470..1058324 1 NC_017530.1 hypothetical protein 1058324 12519164 PPUBIRD1_0928 Pseudomonas putida BIRD-1 hypothetical protein YP_005928817.1 1057470 D 931281 CDS YP_005928818.1 386010541 12519165 complement(1058844..1059812) 1 NC_017530.1 dipeptide transporter ATP-binding subunit; DppF 1059812 dppF 12519165 dppF Pseudomonas putida BIRD-1 DppF YP_005928818.1 1058844 R 931281 CDS YP_005928819.1 386010542 12519166 complement(1059812..1060780) 1 NC_017530.1 Oligopeptide/dipeptide ABC transporter, ATPase subunit 1060780 12519166 PPUBIRD1_0930 Pseudomonas putida BIRD-1 Oligopeptide/dipeptide ABC transporter, ATPase subunit YP_005928819.1 1059812 R 931281 CDS YP_005928820.1 386010543 12519167 complement(1060791..1061693) 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 1061693 12519167 PPUBIRD1_0931 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005928820.1 1060791 R 931281 CDS YP_005928821.1 386010544 12519168 complement(1061728..1062738) 1 NC_017530.1 alkaline phosphatase; protein DppB 1062738 dppB 12519168 dppB Pseudomonas putida BIRD-1 protein DppB YP_005928821.1 1061728 R 931281 CDS YP_005928822.1 386010545 12519169 complement(1062830..1064413) 1 NC_017530.1 Extracellular solute-binding protein 1064413 12519169 PPUBIRD1_0933 Pseudomonas putida BIRD-1 Extracellular solute-binding protein YP_005928822.1 1062830 R 931281 CDS YP_005928823.1 386010546 12519170 complement(1064519..1065898) 1 NC_017530.1 Outer membrane porin 1065898 12519170 PPUBIRD1_0934 Pseudomonas putida BIRD-1 Outer membrane porin YP_005928823.1 1064519 R 931281 CDS YP_005928824.1 386010547 12519171 complement(1066127..1067719) 1 NC_017530.1 Extracellular solute-binding protein 1067719 12519171 PPUBIRD1_0935 Pseudomonas putida BIRD-1 Extracellular solute-binding protein YP_005928824.1 1066127 R 931281 CDS YP_005928825.1 386010548 12519172 complement(1067867..1069492) 1 NC_017530.1 Extracellular solute-binding protein 1069492 12519172 PPUBIRD1_0936 Pseudomonas putida BIRD-1 Extracellular solute-binding protein YP_005928825.1 1067867 R 931281 CDS YP_005928826.1 386010549 12519173 complement(1069873..1070589) 1 NC_017530.1 hypothetical protein 1070589 12519173 PPUBIRD1_0937 Pseudomonas putida BIRD-1 hypothetical protein YP_005928826.1 1069873 R 931281 CDS YP_005928827.1 386010550 12519174 1070792..1072048 1 NC_017530.1 Integral membrane sensor signal transduction histidine kinase 1072048 12519174 PPUBIRD1_0938 Pseudomonas putida BIRD-1 Integral membrane sensor signal transduction histidine kinase YP_005928827.1 1070792 D 931281 CDS YP_005928828.1 386010551 12519175 1072045..1072608 1 NC_017530.1 Two component Fis family transcriptional regulator 1072608 12519175 PPUBIRD1_0939 Pseudomonas putida BIRD-1 Two component Fis family transcriptional regulator YP_005928828.1 1072045 D 931281 CDS YP_005928829.1 386010552 12519176 1072717..1073796 1 NC_017530.1 Beta-lactamase 1073796 12519176 PPUBIRD1_0940 Pseudomonas putida BIRD-1 Beta-lactamase YP_005928829.1 1072717 D 931281 CDS YP_005928830.1 386010553 12519177 1073793..1074089 1 NC_017530.1 hypothetical protein 1074089 12519177 PPUBIRD1_0941 Pseudomonas putida BIRD-1 hypothetical protein YP_005928830.1 1073793 D 931281 CDS YP_005928831.1 386010554 12519178 1074134..1074715 1 NC_017530.1 hypothetical protein 1074715 12519178 PPUBIRD1_0942 Pseudomonas putida BIRD-1 hypothetical protein YP_005928831.1 1074134 D 931281 CDS YP_005928832.1 386010555 12519179 1074717..1075874 1 NC_017530.1 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein 1075874 12519179 PPUBIRD1_0943 Pseudomonas putida BIRD-1 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein YP_005928832.1 1074717 D 931281 CDS YP_005928833.1 386010556 12519180 1075926..1076504 1 NC_017530.1 Intracellular protease, PfpI family 1076504 12519180 PPUBIRD1_0944 Pseudomonas putida BIRD-1 Intracellular protease, PfpI family YP_005928833.1 1075926 D 931281 CDS YP_005928834.1 386010557 12519181 complement(1076535..1076933) 1 NC_017530.1 hypothetical protein 1076933 12519181 PPUBIRD1_0945 Pseudomonas putida BIRD-1 hypothetical protein YP_005928834.1 1076535 R 931281 CDS YP_005928835.1 386010558 12519182 1077049..1077639 1 NC_017530.1 hypothetical protein 1077639 12519182 PPUBIRD1_0946 Pseudomonas putida BIRD-1 hypothetical protein YP_005928835.1 1077049 D 931281 CDS YP_005928836.1 386010559 12519183 1077636..1078508 1 NC_017530.1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1078508 12519183 PPUBIRD1_0947 Pseudomonas putida BIRD-1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_005928836.1 1077636 D 931281 CDS YP_005928837.1 386010560 12519184 complement(1078628..1080151) 1 NC_017530.1 Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit 1080151 12519184 PPUBIRD1_0948 Pseudomonas putida BIRD-1 Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit YP_005928837.1 1078628 R 931281 CDS YP_005928838.1 386010561 12519185 complement(1080166..1080294) 1 NC_017530.1 hypothetical protein 1080294 12519185 PPUBIRD1_0949 Pseudomonas putida BIRD-1 hypothetical protein YP_005928838.1 1080166 R 931281 CDS YP_005928839.1 386010562 12519186 1080401..1081321 1 NC_017530.1 hypothetical protein 1081321 12519186 PPUBIRD1_0950 Pseudomonas putida BIRD-1 hypothetical protein YP_005928839.1 1080401 D 931281 CDS YP_005928840.1 386010563 12519187 complement(1081363..1082091) 1 NC_017530.1 PAP2 family protein 1082091 12519187 PPUBIRD1_0951 Pseudomonas putida BIRD-1 PAP2 family protein YP_005928840.1 1081363 R 931281 CDS YP_005928841.1 386010564 12519188 1082275..1082958 1 NC_017530.1 winged helix family two component transcriptional regulator; ColR 1082958 colR 12519188 colR Pseudomonas putida BIRD-1 ColR YP_005928841.1 1082275 D 931281 CDS YP_005928842.1 386010565 12519189 1082948..1084258 1 NC_017530.1 Integral membrane sensor signal transduction histidine kinase 1084258 12519189 PPUBIRD1_0953 Pseudomonas putida BIRD-1 Integral membrane sensor signal transduction histidine kinase YP_005928842.1 1082948 D 931281 CDS YP_005928843.1 386010566 12519190 1084366..1085046 1 NC_017530.1 type 11 methyltransferase 1085046 12519190 PPUBIRD1_0954 Pseudomonas putida BIRD-1 type 11 methyltransferase YP_005928843.1 1084366 D 931281 CDS YP_005928844.1 386010567 12519191 1085053..1085751 1 NC_017530.1 Lipopolysaccharide kinase 1085751 12519191 PPUBIRD1_0955 Pseudomonas putida BIRD-1 Lipopolysaccharide kinase YP_005928844.1 1085053 D 931281 CDS YP_005928845.1 386010568 12519192 1085751..1085984 1 NC_017530.1 hypothetical protein 1085984 12519192 PPUBIRD1_0956 Pseudomonas putida BIRD-1 hypothetical protein YP_005928845.1 1085751 D 931281 CDS YP_005928846.1 386010569 12519193 complement(1086091..1089135) 1 NC_017530.1 hypothetical protein 1089135 12519193 PPUBIRD1_0957 Pseudomonas putida BIRD-1 hypothetical protein YP_005928846.1 1086091 R 931281 CDS YP_005928847.1 386010570 12519194 complement(1089148..1090296) 1 NC_017530.1 RND efflux membrane fusion protein-related protein 1090296 12519194 PPUBIRD1_0958 Pseudomonas putida BIRD-1 RND efflux membrane fusion protein-related protein YP_005928847.1 1089148 R 931281 CDS YP_005928848.1 386010571 12519195 complement(1090515..1091612) 1 NC_017530.1 hypothetical protein 1091612 12519195 PPUBIRD1_0959 Pseudomonas putida BIRD-1 hypothetical protein YP_005928848.1 1090515 R 931281 CDS YP_005928849.1 386010572 12519196 complement(1091615..1092679) 1 NC_017530.1 hypothetical protein 1092679 12519196 PPUBIRD1_0960 Pseudomonas putida BIRD-1 hypothetical protein YP_005928849.1 1091615 R 931281 CDS YP_005928850.1 386010573 12519197 complement(1092699..1094126) 1 NC_017530.1 hypothetical protein 1094126 12519197 PPUBIRD1_0961 Pseudomonas putida BIRD-1 hypothetical protein YP_005928850.1 1092699 R 931281 CDS YP_005928851.1 386010574 12519198 complement(1094236..1094622) 1 NC_017530.1 hypothetical protein 1094622 12519198 PPUBIRD1_0962 Pseudomonas putida BIRD-1 hypothetical protein YP_005928851.1 1094236 R 931281 CDS YP_005928852.1 386010575 12519199 complement(1094636..1095118) 1 NC_017530.1 hypothetical protein 1095118 12519199 PPUBIRD1_0963 Pseudomonas putida BIRD-1 hypothetical protein YP_005928852.1 1094636 R 931281 CDS YP_005928853.1 386010576 12519200 complement(1095260..1096594) 1 NC_017530.1 hypothetical protein 1096594 12519200 PPUBIRD1_0964 Pseudomonas putida BIRD-1 hypothetical protein YP_005928853.1 1095260 R 931281 CDS YP_005928854.1 386010577 12519201 complement(1096753..1098804) 1 NC_017530.1 Diguanylate cyclase/phosphodiesterase 1098804 12519201 PPUBIRD1_0965 Pseudomonas putida BIRD-1 Diguanylate cyclase/phosphodiesterase YP_005928854.1 1096753 R 931281 CDS YP_005928855.1 386010578 12519202 complement(1099055..1099651) 1 NC_017530.1 Superoxide dismutase 1099651 12519202 PPUBIRD1_0966 Pseudomonas putida BIRD-1 Superoxide dismutase YP_005928855.1 1099055 R 931281 CDS YP_005928856.1 386010579 12519203 complement(1099918..1100517) 1 NC_017530.1 Amino acid transporter LysE 1100517 12519203 PPUBIRD1_0967 Pseudomonas putida BIRD-1 Amino acid transporter LysE YP_005928856.1 1099918 R 931281 CDS YP_005928857.1 386010580 12519204 1100620..1101510 1 NC_017530.1 Chromosome replication initiation inhibitor protein 1101510 12519204 PPUBIRD1_0968 Pseudomonas putida BIRD-1 Chromosome replication initiation inhibitor protein YP_005928857.1 1100620 D 931281 CDS YP_005928858.1 386010581 12519205 1101560..1102552 1 NC_017530.1 NAD-dependent epimerase/dehydratase 1102552 12519205 PPUBIRD1_0969 Pseudomonas putida BIRD-1 NAD-dependent epimerase/dehydratase YP_005928858.1 1101560 D 931281 CDS YP_005928859.1 386010582 12519206 1102626..1103495 1 NC_017530.1 hypothetical protein 1103495 12519206 PPUBIRD1_0970 Pseudomonas putida BIRD-1 hypothetical protein YP_005928859.1 1102626 D 931281 CDS YP_005928860.1 386010583 12519207 complement(1103605..1104654) 1 NC_017530.1 NADH:flavin oxidoreductase/NADH oxidase; XenB 1104654 xenB 12519207 xenB Pseudomonas putida BIRD-1 XenB YP_005928860.1 1103605 R 931281 CDS YP_005928861.1 386010584 12519208 complement(1104672..1104974) 1 NC_017530.1 ArsR family transcriptional regulator 1104974 12519208 PPUBIRD1_0972 Pseudomonas putida BIRD-1 ArsR family transcriptional regulator YP_005928861.1 1104672 R 931281 CDS YP_005928862.1 386010585 12519209 1105125..1105709 1 NC_017530.1 hypothetical protein 1105709 12519209 PPUBIRD1_0973 Pseudomonas putida BIRD-1 hypothetical protein YP_005928862.1 1105125 D 931281 CDS YP_005928863.1 386010586 12519210 complement(1105822..1106610) 1 NC_017530.1 phospholipid/glycerol acyltransferase 1106610 12519210 PPUBIRD1_0974 Pseudomonas putida BIRD-1 phospholipid/glycerol acyltransferase YP_005928863.1 1105822 R 931281 CDS YP_005928864.1 386010587 12519211 complement(1106610..1107365) 1 NC_017530.1 hypothetical protein 1107365 12519211 PPUBIRD1_0975 Pseudomonas putida BIRD-1 hypothetical protein YP_005928864.1 1106610 R 931281 CDS YP_005928865.1 386010588 12519212 1107526..1108413 1 NC_017530.1 hypothetical protein 1108413 12519212 PPUBIRD1_0976 Pseudomonas putida BIRD-1 hypothetical protein YP_005928865.1 1107526 D 931281 CDS YP_005928866.1 386010589 12519213 1108609..1109550 1 NC_017530.1 Auxin efflux carrier 1109550 12519213 PPUBIRD1_0977 Pseudomonas putida BIRD-1 Auxin efflux carrier YP_005928866.1 1108609 D 931281 CDS YP_005928867.1 386010590 12519214 1109607..1110968 1 NC_017530.1 amino acid ABC transporter permease; AroP protein 1110968 aroP 12519214 aroP Pseudomonas putida BIRD-1 AroP protein YP_005928867.1 1109607 D 931281 CDS YP_005928868.1 386010591 12519215 complement(1111071..1112114) 1 NC_017530.1 CaCA family Na+/Ca+ antiporter 1112114 12519215 PPUBIRD1_0979 Pseudomonas putida BIRD-1 CaCA family Na+/Ca+ antiporter YP_005928868.1 1111071 R 931281 CDS YP_005928869.1 386010592 12519216 complement(1112175..1112549) 1 NC_017530.1 Rare lipoprotein A 1112549 12519216 PPUBIRD1_0980 Pseudomonas putida BIRD-1 Rare lipoprotein A YP_005928869.1 1112175 R 931281 CDS YP_005928870.1 386010593 12519217 complement(1112676..1114121) 1 NC_017530.1 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; protein GatB 1114121 gatB 12519217 gatB Pseudomonas putida BIRD-1 protein GatB YP_005928870.1 1112676 R 931281 CDS YP_005928871.1 386010594 12519218 complement(1114133..1115584) 1 NC_017530.1 Glutamyl-tRNA(Gln) amidotransferase subunit A; protein GatA 1115584 gatA 12519218 gatA Pseudomonas putida BIRD-1 protein GatA YP_005928871.1 1114133 R 931281 CDS YP_005928872.1 386010595 12519219 complement(1115600..1115866) 1 NC_017530.1 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; protein GatC 1115866 gatC 12519219 gatC Pseudomonas putida BIRD-1 protein GatC YP_005928872.1 1115600 R 931281 CDS YP_005928873.1 386010596 12519220 1116093..1117130 1 NC_017530.1 Rod shape-determining protein MreB 1117130 12519220 PPUBIRD1_0985 Pseudomonas putida BIRD-1 Rod shape-determining protein MreB YP_005928873.1 1116093 D 931281 CDS YP_005928874.1 386010597 12519221 1117357..1118385 1 NC_017530.1 Rod shape-determining protein MreC 1118385 12519221 PPUBIRD1_0986 Pseudomonas putida BIRD-1 Rod shape-determining protein MreC YP_005928874.1 1117357 D 931281 CDS YP_005928875.1 386010598 12519222 1118382..1118873 1 NC_017530.1 rod shape-determining protein MreD; MreD 1118873 mreD 12519222 mreD Pseudomonas putida BIRD-1 MreD YP_005928875.1 1118382 D 931281 CDS YP_005928876.1 386010599 12519223 1118906..1119517 1 NC_017530.1 Maf-like protein; hypothetical protein 1119517 maf 12519223 maf Pseudomonas putida BIRD-1 hypothetical protein YP_005928876.1 1118906 D 931281 CDS YP_005928877.1 386010600 12519224 1119571..1121028 1 NC_017530.1 ribonuclease, Rne/Rng family; CafA 1121028 cafA 12519224 cafA Pseudomonas putida BIRD-1 CafA YP_005928877.1 1119571 D 931281 CDS YP_005928878.1 386010601 12519225 1121111..1124932 1 NC_017530.1 hypothetical protein 1124932 12519225 PPUBIRD1_0990 Pseudomonas putida BIRD-1 hypothetical protein YP_005928878.1 1121111 D 931281 CDS YP_005928879.1 386010602 12519226 1124941..1125792 1 NC_017530.1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1125792 12519226 PPUBIRD1_0991 Pseudomonas putida BIRD-1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_005928879.1 1124941 D 931281 CDS YP_005928880.1 386010603 12519227 1125795..1127234 1 NC_017530.1 Peptidase U62, modulator of DNA gyrase 1127234 12519227 PPUBIRD1_0992 Pseudomonas putida BIRD-1 Peptidase U62, modulator of DNA gyrase YP_005928880.1 1125795 D 931281 CDS YP_005928881.1 386010604 12519228 complement(1127292..1127813) 1 NC_017530.1 hypothetical protein 1127813 12519228 PPUBIRD1_0993 Pseudomonas putida BIRD-1 hypothetical protein YP_005928881.1 1127292 R 931281 CDS YP_005928882.1 386010605 12519229 1127923..1129269 1 NC_017530.1 pmbA protein; PmbA protein 1129269 pmbA 12519229 pmbA Pseudomonas putida BIRD-1 PmbA protein YP_005928882.1 1127923 D 931281 CDS YP_005928883.1 386010606 12519230 1129516..1129914 1 NC_017530.1 hypothetical protein 1129914 12519230 PPUBIRD1_0996 Pseudomonas putida BIRD-1 hypothetical protein YP_005928883.1 1129516 D 931281 CDS YP_005928884.1 386010607 12519231 1129907..1131283 1 NC_017530.1 Fumarate hydratase class II 1; protein FumC 1131283 fumC 12519231 fumC Pseudomonas putida BIRD-1 protein FumC YP_005928884.1 1129907 D 931281 CDS YP_005928885.1 386010608 12519232 1131311..1131772 1 NC_017530.1 hypothetical protein 1131772 12519232 PPUBIRD1_0998 Pseudomonas putida BIRD-1 hypothetical protein YP_005928885.1 1131311 D 931281 CDS YP_005928886.1 386010609 12519233 1131774..1132385 1 NC_017530.1 superoxide dismutase; SodA protein 1132385 sodA 12519233 sodA Pseudomonas putida BIRD-1 SodA protein YP_005928886.1 1131774 D 931281 CDS YP_005928887.1 386010610 12519234 1132397..1133290 1 NC_017530.1 Zinc/iron permease 1133290 12519234 PPUBIRD1_1000 Pseudomonas putida BIRD-1 Zinc/iron permease YP_005928887.1 1132397 D 931281 CDS YP_005928888.1 386010611 12519235 complement(1133318..1133590) 1 NC_017530.1 Phosphocarrier protein HPr; PtsO 1133590 ptsO 12519235 ptsO Pseudomonas putida BIRD-1 PtsO YP_005928888.1 1133318 R 931281 CDS YP_005928889.1 386010612 12519236 complement(1133609..1134463) 1 NC_017530.1 hypothetical protein 1134463 12519236 PPUBIRD1_1002 Pseudomonas putida BIRD-1 hypothetical protein YP_005928889.1 1133609 R 931281 CDS YP_005928890.1 386010613 12519237 complement(1134466..1134888) 1 NC_017530.1 PTS IIA-like nitrogen-regulatory protein PtsN; PtsN 1134888 ptsN 12519237 ptsN Pseudomonas putida BIRD-1 PtsN YP_005928890.1 1134466 R 931281 CDS YP_005928891.1 386010614 12519238 complement(1134943..1135251) 1 NC_017530.1 Probable sigma(54) modulation protein; RpoX 1135251 rpoX 12519238 rpoX Pseudomonas putida BIRD-1 RpoX YP_005928891.1 1134943 R 931281 CDS YP_005928892.1 386010615 12519239 complement(1135331..1136800) 1 NC_017530.1 RNA polymerase sigma-54 factor; protein RpoN 1136800 rpoN 12519239 rpoN Pseudomonas putida BIRD-1 protein RpoN YP_005928892.1 1135331 R 931281 CDS YP_005928893.1 386010616 12519240 complement(1137000..1137725) 1 NC_017530.1 ABC transporter 1137725 12519240 PPUBIRD1_1006 Pseudomonas putida BIRD-1 ABC transporter YP_005928893.1 1137000 R 931281 CDS YP_005928894.1 386010617 12519241 complement(1137726..1138223) 1 NC_017530.1 hypothetical protein 1138223 12519241 PPUBIRD1_1007 Pseudomonas putida BIRD-1 hypothetical protein YP_005928894.1 1137726 R 931281 CDS YP_005928895.1 386010618 12519242 complement(1138237..1138809) 1 NC_017530.1 hypothetical protein 1138809 12519242 PPUBIRD1_1008 Pseudomonas putida BIRD-1 hypothetical protein YP_005928895.1 1138237 R 931281 CDS YP_005928896.1 386010619 12519243 complement(1138818..1139342) 1 NC_017530.1 YrbI family phosphatase 1139342 12519243 PPUBIRD1_1009 Pseudomonas putida BIRD-1 YrbI family phosphatase YP_005928896.1 1138818 R 931281 CDS YP_005928897.1 386010620 12519244 complement(1139355..1140329) 1 NC_017530.1 KpsF/GutQ family protein 1140329 12519244 PPUBIRD1_1010 Pseudomonas putida BIRD-1 KpsF/GutQ family protein YP_005928897.1 1139355 R 931281 CDS YP_005928898.1 386010621 12519245 1140578..1141387 1 NC_017530.1 toluene tolerance ABC efflux transporter, ATP-binding protein; Ttg2A 1141387 ttg2A 12519245 ttg2A Pseudomonas putida BIRD-1 Ttg2A YP_005928898.1 1140578 D 931281 CDS YP_005928899.1 386010622 12519246 1141387..1142184 1 NC_017530.1 hypothetical protein 1142184 12519246 PPUBIRD1_1012 Pseudomonas putida BIRD-1 hypothetical protein YP_005928899.1 1141387 D 931281 CDS YP_005928900.1 386010623 12519247 1142184..1142669 1 NC_017530.1 Ttg2C 1142669 ttg2C 12519247 ttg2C Pseudomonas putida BIRD-1 Ttg2C YP_005928900.1 1142184 D 931281 CDS YP_005928901.1 386010624 12519248 1142679..1143326 1 NC_017530.1 Toluene tolerance protein ttg2D; Ttg2D 1143326 ttg2D 12519248 ttg2D Pseudomonas putida BIRD-1 Ttg2D YP_005928901.1 1142679 D 931281 CDS YP_005928902.1 386010625 12519249 1143323..1143625 1 NC_017530.1 Ttg2E 1143625 ttg2E 12519249 ttg2E Pseudomonas putida BIRD-1 Ttg2E YP_005928902.1 1143323 D 931281 CDS YP_005928903.1 386010626 12519250 1143743..1143982 1 NC_017530.1 BolA family protein; Ttg2F 1143982 ttg2F 12519250 ttg2F Pseudomonas putida BIRD-1 Ttg2F YP_005928903.1 1143743 D 931281 CDS YP_005928904.1 386010627 12519251 1144006..1145271 1 NC_017530.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; MurA 1145271 murA 12519251 murA Pseudomonas putida BIRD-1 MurA YP_005928904.1 1144006 D 931281 CDS YP_005928905.1 386010628 12519252 1145363..1145998 1 NC_017530.1 ATP phosphoribosyltransferase; protein HisG 1145998 hisG 12519252 hisG Pseudomonas putida BIRD-1 protein HisG YP_005928905.1 1145363 D 931281 CDS YP_005928906.1 386010629 12519253 1146125..1147450 1 NC_017530.1 Histidinol dehydrogenase; protein HisD 1147450 hisD 12519253 hisD Pseudomonas putida BIRD-1 protein HisD YP_005928906.1 1146125 D 931281 CDS YP_005928907.1 386010630 12519254 1147453..1148499 1 NC_017530.1 histidinol-phosphate aminotransferase 1148499 12519254 PPUBIRD1_1020 Pseudomonas putida BIRD-1 histidinol-phosphate aminotransferase YP_005928907.1 1147453 D 931281 CDS YP_005928908.1 386010631 12519255 complement(1148908..1150092) 1 NC_017530.1 hypothetical protein 1150092 12519255 PPUBIRD1_1021 Pseudomonas putida BIRD-1 hypothetical protein YP_005928908.1 1148908 R 931281 CDS YP_005928909.1 386010632 12519256 1150232..1150882 1 NC_017530.1 GntR family transcriptional regulator 1150882 12519256 PPUBIRD1_1022 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005928909.1 1150232 D 931281 CDS YP_005928910.1 386010633 12519257 1150872..1152176 1 NC_017530.1 Cyanate transporter 1152176 12519257 PPUBIRD1_1023 Pseudomonas putida BIRD-1 Cyanate transporter YP_005928910.1 1150872 D 931281 CDS YP_005928911.1 386010634 12519258 1152286..1152762 1 NC_017530.1 hypothetical protein 1152762 12519258 PPUBIRD1_1024 Pseudomonas putida BIRD-1 hypothetical protein YP_005928911.1 1152286 D 931281 CDS YP_005928912.1 386010635 12519259 complement(1153044..1154051) 1 NC_017530.1 Nucleoid-associated protein ndpA; NdpA 1154051 ndpA 12519259 ndpA Pseudomonas putida BIRD-1 NdpA YP_005928912.1 1153044 R 931281 CDS YP_005928913.1 386010636 12519260 1154422..1154703 1 NC_017530.1 histone family protein DNA-binding protein; HupN 1154703 hupN 12519260 hupN Pseudomonas putida BIRD-1 HupN YP_005928913.1 1154422 D 931281 CDS YP_005928914.1 386010637 12519261 complement(1154751..1155704) 1 NC_017530.1 Ribosomal RNA large subunit methyltransferase F 1155704 12519261 PPUBIRD1_1027 Pseudomonas putida BIRD-1 Ribosomal RNA large subunit methyltransferase F YP_005928914.1 1154751 R 931281 CDS YP_005928915.1 386010638 12519262 complement(1155883..1158729) 1 NC_017530.1 Valyl-tRNA synthetase; ValS protein 1158729 valS 12519262 valS Pseudomonas putida BIRD-1 ValS protein YP_005928915.1 1155883 R 931281 CDS YP_005928916.1 386010639 12519263 complement(1158909..1159256) 1 NC_017530.1 hypothetical protein 1159256 12519263 PPUBIRD1_1029 Pseudomonas putida BIRD-1 hypothetical protein YP_005928916.1 1158909 R 931281 CDS YP_005928917.1 386010640 12519264 complement(1159280..1159708) 1 NC_017530.1 DNA polymerase III subunit chi; HolC protein 1159708 holC 12519264 holC Pseudomonas putida BIRD-1 HolC protein YP_005928917.1 1159280 R 931281 CDS YP_005928918.1 386010641 12519265 complement(1159759..1161252) 1 NC_017530.1 Probable cytosol aminopeptidase; protein PepA 1161252 pepA 12519265 pepA Pseudomonas putida BIRD-1 protein PepA YP_005928918.1 1159759 R 931281 CDS YP_005928919.1 386010642 12519266 1161554..1162669 1 NC_017530.1 Permease YjgP/YjgQ family protein 1162669 12519266 PPUBIRD1_1032 Pseudomonas putida BIRD-1 Permease YjgP/YjgQ family protein YP_005928919.1 1161554 D 931281 CDS YP_005928920.1 386010643 12519267 1162662..1163723 1 NC_017530.1 Permease YjgP/YjgQ family protein 1163723 12519267 PPUBIRD1_1033 Pseudomonas putida BIRD-1 Permease YjgP/YjgQ family protein YP_005928920.1 1162662 D 931281 CDS YP_005928921.1 386010644 12519268 complement(1163872..1164360) 1 NC_017530.1 RDD domain-containing protein 1164360 12519268 PPUBIRD1_1034 Pseudomonas putida BIRD-1 RDD domain-containing protein YP_005928921.1 1163872 R 931281 CDS YP_005928922.1 386010645 12519269 complement(1164450..1164659) 1 NC_017530.1 Cold-shock domain-containing protein 1164659 12519269 PPUBIRD1_1035 Pseudomonas putida BIRD-1 Cold-shock domain-containing protein YP_005928922.1 1164450 R 931281 CDS YP_005928923.1 386010646 12519270 complement(1165017..1166138) 1 NC_017530.1 glycine cleavage system T protein; protein GcvT 1166138 gcvT 12519270 gcvT Pseudomonas putida BIRD-1 protein GcvT YP_005928923.1 1165017 R 931281 CDS YP_005928924.1 386010647 12519271 complement(1166166..1167542) 1 NC_017530.1 L-serine dehydratase 1 1167542 12519271 PPUBIRD1_1037 Pseudomonas putida BIRD-1 L-serine dehydratase 1 YP_005928924.1 1166166 R 931281 CDS YP_005928925.1 386010648 12519272 complement(1167692..1170547) 1 NC_017530.1 Glycine dehydrogenase [decarboxylating] 1; GcvP 1170547 gcvP 12519272 gcvP Pseudomonas putida BIRD-1 GcvP YP_005928925.1 1167692 R 931281 CDS YP_005928926.1 386010649 12519273 complement(1170559..1170942) 1 NC_017530.1 Glycine cleavage system H protein 1 1170942 12519273 PPUBIRD1_1039 Pseudomonas putida BIRD-1 Glycine cleavage system H protein 1 YP_005928926.1 1170559 R 931281 CDS YP_005928927.1 386010650 12519274 complement(1171246..1171713) 1 NC_017530.1 DoxX family protein 1171713 12519274 PPUBIRD1_1040 Pseudomonas putida BIRD-1 DoxX family protein YP_005928927.1 1171246 R 931281 CDS YP_005928928.1 386010651 12519275 complement(1171706..1172479) 1 NC_017530.1 hypothetical protein 1172479 12519275 PPUBIRD1_1041 Pseudomonas putida BIRD-1 hypothetical protein YP_005928928.1 1171706 R 931281 CDS YP_005928929.1 386010652 12519276 complement(1172476..1173291) 1 NC_017530.1 hypothetical protein 1173291 12519276 PPUBIRD1_1042 Pseudomonas putida BIRD-1 hypothetical protein YP_005928929.1 1172476 R 931281 CDS YP_005928930.1 386010653 12519277 complement(1173326..1173613) 1 NC_017530.1 hypothetical protein 1173613 12519277 PPUBIRD1_1043 Pseudomonas putida BIRD-1 hypothetical protein YP_005928930.1 1173326 R 931281 CDS YP_005928931.1 386010654 12519278 1173836..1174420 1 NC_017530.1 RNA polymerase sigma factor 1174420 12519278 PPUBIRD1_1044 Pseudomonas putida BIRD-1 RNA polymerase sigma factor YP_005928931.1 1173836 D 931281 CDS YP_005928932.1 386010655 12519279 1174410..1175051 1 NC_017530.1 hypothetical protein 1175051 12519279 PPUBIRD1_1045 Pseudomonas putida BIRD-1 hypothetical protein YP_005928932.1 1174410 D 931281 CDS YP_005928933.1 386010656 12519280 complement(1175129..1176334) 1 NC_017530.1 Sodium/glutamate symporter 1176334 12519280 PPUBIRD1_1046 Pseudomonas putida BIRD-1 Sodium/glutamate symporter YP_005928933.1 1175129 R 931281 CDS YP_005928934.1 386010657 12519281 complement(1176462..1177970) 1 NC_017530.1 Sigma-54 dependent transcriptional regulator/sensory box protein 1177970 12519281 PPUBIRD1_1047 Pseudomonas putida BIRD-1 Sigma-54 dependent transcriptional regulator/sensory box protein YP_005928934.1 1176462 R 931281 CDS YP_005928935.1 386010658 12519282 complement(1178111..1178479) 1 NC_017530.1 hypothetical protein 1178479 12519282 PPUBIRD1_1048 Pseudomonas putida BIRD-1 hypothetical protein YP_005928935.1 1178111 R 931281 CDS YP_005928936.1 386010659 12519283 complement(1178536..1179465) 1 NC_017530.1 carbamate kinase; ArcC 1179465 arcC 12519283 arcC Pseudomonas putida BIRD-1 ArcC YP_005928936.1 1178536 R 931281 CDS YP_005928937.1 386010660 12519284 complement(1179647..1180657) 1 NC_017530.1 Ornithine carbamoyltransferase, catabolic; ArgI 1180657 argI 12519284 argI Pseudomonas putida BIRD-1 ArgI YP_005928937.1 1179647 R 931281 CDS YP_005928938.1 386010661 12519285 complement(1180727..1181980) 1 NC_017530.1 Arginine deiminase; protein ArcA 1181980 arcA 12519285 arcA Pseudomonas putida BIRD-1 protein ArcA YP_005928938.1 1180727 R 931281 CDS YP_005928939.1 386010662 12519286 complement(1182014..1183441) 1 NC_017530.1 Arginine/ornithine antiporter 1183441 12519286 PPUBIRD1_1052 Pseudomonas putida BIRD-1 Arginine/ornithine antiporter YP_005928939.1 1182014 R 931281 CDS YP_005928940.1 386010663 12519287 1183878..1185305 1 NC_017530.1 Arginine/ornithine antiporter 1185305 12519287 PPUBIRD1_1053 Pseudomonas putida BIRD-1 Arginine/ornithine antiporter YP_005928940.1 1183878 D 931281 CDS YP_005928941.1 386010664 12519288 complement(1185285..1185698) 1 NC_017530.1 hypothetical protein 1185698 12519288 PPUBIRD1_1054 Pseudomonas putida BIRD-1 hypothetical protein YP_005928941.1 1185285 R 931281 CDS YP_005928942.1 386010665 12519289 complement(1185753..1186346) 1 NC_017530.1 heme oxygenase; HemO 1186346 hemO 12519289 hemO Pseudomonas putida BIRD-1 HemO YP_005928942.1 1185753 R 931281 CDS YP_005928943.1 386010666 12519290 complement(1186548..1189076) 1 NC_017530.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor 1189076 12519290 PPUBIRD1_1056 Pseudomonas putida BIRD-1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor YP_005928943.1 1186548 R 931281 CDS YP_005928944.1 386010667 12519291 complement(1189263..1190261) 1 NC_017530.1 Anti-FecI sigma factor, FecR 1190261 12519291 PPUBIRD1_1057 Pseudomonas putida BIRD-1 Anti-FecI sigma factor, FecR YP_005928944.1 1189263 R 931281 CDS YP_005928945.1 386010668 12519292 complement(1190314..1190826) 1 NC_017530.1 ECF subfamily RNA polymerase sigma-24 factor 1190826 12519292 PPUBIRD1_1058 Pseudomonas putida BIRD-1 ECF subfamily RNA polymerase sigma-24 factor YP_005928945.1 1190314 R 931281 CDS YP_005928946.1 386010669 12519293 complement(1191069..1192070) 1 NC_017530.1 glyceraldehyde-3-phosphate dehydrogenase, type I; hypothetical protein 1192070 gap 12519293 gap Pseudomonas putida BIRD-1 hypothetical protein YP_005928946.1 1191069 R 931281 CDS YP_005928947.1 386010670 12519294 1192335..1194161 1 NC_017530.1 Phosphogluconate dehydratase; Edd 1194161 edd 12519294 edd Pseudomonas putida BIRD-1 Edd YP_005928947.1 1192335 D 931281 CDS YP_005928948.1 386010671 12519295 1194158..1195117 1 NC_017530.1 glucokinase; hypothetical protein 1195117 glk 12519295 glk Pseudomonas putida BIRD-1 hypothetical protein YP_005928948.1 1194158 D 931281 CDS YP_005928949.1 386010672 12519296 1195196..1195921 1 NC_017530.1 winged helix family two component transcriptional regulator; GltR_2 1195921 gltR_2 12519296 gltR_2 Pseudomonas putida BIRD-1 GltR_2 YP_005928949.1 1195196 D 931281 CDS YP_005928950.1 386010673 12519297 1195902..1197356 1 NC_017530.1 Integral membrane sensor signal transduction histidine kinase 1197356 12519297 PPUBIRD1_1063 Pseudomonas putida BIRD-1 Integral membrane sensor signal transduction histidine kinase YP_005928950.1 1195902 D 931281 CDS YP_005928951.1 386010674 12519298 1197571..1198821 1 NC_017530.1 hypothetical protein 1198821 12519298 PPUBIRD1_1064 Pseudomonas putida BIRD-1 hypothetical protein YP_005928951.1 1197571 D 931281 CDS YP_005928952.1 386010675 12519299 1198926..1200212 1 NC_017530.1 Sugar ABC transporter, periplasmic sugar-binding protein 1200212 12519299 PPUBIRD1_1065 Pseudomonas putida BIRD-1 Sugar ABC transporter, periplasmic sugar-binding protein YP_005928952.1 1198926 D 931281 CDS YP_005928953.1 386010676 12519300 1200346..1201254 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 1201254 12519300 PPUBIRD1_1066 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005928953.1 1200346 D 931281 CDS YP_005928954.1 386010677 12519301 1201247..1202092 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 1202092 12519301 PPUBIRD1_1067 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005928954.1 1201247 D 931281 CDS YP_005928955.1 386010678 12519302 1202096..1203250 1 NC_017530.1 Sugar ABC transporter, ATP-binding subunit 1203250 12519302 PPUBIRD1_1068 Pseudomonas putida BIRD-1 Sugar ABC transporter, ATP-binding subunit YP_005928955.1 1202096 D 931281 CDS YP_005928956.1 386010679 12519303 1203291..1204634 1 NC_017530.1 Porin B 1204634 12519303 PPUBIRD1_1069 Pseudomonas putida BIRD-1 Porin B YP_005928956.1 1203291 D 931281 CDS YP_005928957.1 386010680 12519304 1204752..1205606 1 NC_017530.1 aldose 1-epimerase 1205606 12519304 PPUBIRD1_1070 Pseudomonas putida BIRD-1 aldose 1-epimerase YP_005928957.1 1204752 D 931281 CDS YP_005928958.1 386010681 12519305 complement(1205599..1206471) 1 NC_017530.1 DNA-binding transcriptional regulator HexR 1206471 12519305 PPUBIRD1_1071 Pseudomonas putida BIRD-1 DNA-binding transcriptional regulator HexR YP_005928958.1 1205599 R 931281 CDS YP_005928959.1 386010682 12519306 1206674..1208143 1 NC_017530.1 Glucose-6-phosphate 1-dehydrogenase; Zwf 1208143 zwf 12519306 zwf Pseudomonas putida BIRD-1 Zwf YP_005928959.1 1206674 D 931281 CDS YP_005928960.1 386010683 12519307 1208115..1208843 1 NC_017530.1 6-phosphogluconolactonase; Pgl 1208843 pgl 12519307 pgl Pseudomonas putida BIRD-1 Pgl YP_005928960.1 1208115 D 931281 CDS YP_005928961.1 386010684 12519308 1208861..1209541 1 NC_017530.1 Keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 1209541 12519308 PPUBIRD1_1074 Pseudomonas putida BIRD-1 Keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_005928961.1 1208861 D 931281 CDS YP_005928962.1 386010685 12519309 complement(1209943..1211616) 1 NC_017530.1 2-isopropylmalate synthase; protein LeuA 1211616 leuA 12519309 leuA Pseudomonas putida BIRD-1 protein LeuA YP_005928962.1 1209943 R 931281 CDS YP_005928963.1 386010686 12519310 complement(1212049..1212876) 1 NC_017530.1 Peptidase M23B 1212876 12519310 PPUBIRD1_1076 Pseudomonas putida BIRD-1 Peptidase M23B YP_005928963.1 1212049 R 931281 CDS YP_005928964.1 386010687 12519311 complement(1212880..1214271) 1 NC_017530.1 Exodeoxyribonuclease 7 large subunit; XseA 1214271 xseA 12519311 xseA Pseudomonas putida BIRD-1 XseA YP_005928964.1 1212880 R 931281 CDS YP_005928965.1 386010688 12519312 complement(1214340..1215218) 1 NC_017530.1 LysR family transcriptional regulator 1215218 12519312 PPUBIRD1_1078 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005928965.1 1214340 R 931281 CDS YP_005928966.1 386010689 12519313 1215316..1216071 1 NC_017530.1 hypothetical protein 1216071 12519313 PPUBIRD1_1079 Pseudomonas putida BIRD-1 hypothetical protein YP_005928966.1 1215316 D 931281 CDS YP_005928967.1 386010690 12519314 1216119..1216676 1 NC_017530.1 hypothetical protein 1216676 12519314 PPUBIRD1_1080 Pseudomonas putida BIRD-1 hypothetical protein YP_005928967.1 1216119 D 931281 CDS YP_005928968.1 386010691 12519315 1216763..1218232 1 NC_017530.1 inositol-5-monophosphate dehydrogenase; protein GuaB 1218232 guaB 12519315 guaB Pseudomonas putida BIRD-1 protein GuaB YP_005928968.1 1216763 D 931281 CDS YP_005928969.1 386010692 12519316 1218311..1219888 1 NC_017530.1 GMP synthase [glutamine-hydrolyzing]; protein GuaA 1219888 guaA 12519316 guaA Pseudomonas putida BIRD-1 protein GuaA YP_005928969.1 1218311 D 931281 CDS YP_005928970.1 386010693 12519317 complement(1219983..1221857) 1 NC_017530.1 Sulfatase domain-containing protein 1221857 12519317 PPUBIRD1_1083 Pseudomonas putida BIRD-1 Sulfatase domain-containing protein YP_005928970.1 1219983 R 931281 CDS YP_005928971.1 386010694 12519318 1222158..1223537 1 NC_017530.1 multicopper oxidase; CumA 1223537 cumA 12519318 cumA Pseudomonas putida BIRD-1 CumA YP_005928971.1 1222158 D 931281 CDS YP_005928972.1 386010695 12519319 1223537..1224016 1 NC_017530.1 CMP/dCMP deaminase zinc-binding protein 1224016 12519319 PPUBIRD1_1085 Pseudomonas putida BIRD-1 CMP/dCMP deaminase zinc-binding protein YP_005928972.1 1223537 D 931281 CDS YP_005928973.1 386010696 12519320 complement(1224108..1225565) 1 NC_017530.1 Membrane-bound lytic murein transglycosylase F 1225565 12519320 PPUBIRD1_1086 Pseudomonas putida BIRD-1 Membrane-bound lytic murein transglycosylase F YP_005928973.1 1224108 R 931281 CDS YP_005928974.1 386010697 12519321 1226105..1230004 1 NC_017530.1 Phosphoribosylformylglycinamidine synthase 1230004 12519321 PPUBIRD1_1087 Pseudomonas putida BIRD-1 Phosphoribosylformylglycinamidine synthase YP_005928974.1 1226105 D 931281 CDS YP_005928975.1 386010698 12519322 1230008..1230319 1 NC_017530.1 hypothetical protein 1230319 12519322 PPUBIRD1_1088 Pseudomonas putida BIRD-1 hypothetical protein YP_005928975.1 1230008 D 931281 CDS YP_005928976.1 386010699 12519323 complement(1230423..1231184) 1 NC_017530.1 Sec-independent protein translocase subunit TatC 1231184 12519323 PPUBIRD1_1089 Pseudomonas putida BIRD-1 Sec-independent protein translocase subunit TatC YP_005928976.1 1230423 R 931281 CDS YP_005928977.1 386010700 12519324 complement(1231181..1231471) 1 NC_017530.1 Twin-arginine translocation protein, TatB subunit 1231471 12519324 PPUBIRD1_1090 Pseudomonas putida BIRD-1 Twin-arginine translocation protein, TatB subunit YP_005928977.1 1231181 R 931281 CDS YP_005928978.1 386010701 12519325 complement(1231471..1231704) 1 NC_017530.1 twin-arginine translocation protein, TatA/E family subunit; TatA 1231704 tatA 12519325 tatA Pseudomonas putida BIRD-1 TatA YP_005928978.1 1231471 R 931281 CDS YP_005928979.1 386010702 12519326 1231850..1232815 1 NC_017530.1 General secretion pathway protein K 1232815 12519326 PPUBIRD1_1092 Pseudomonas putida BIRD-1 General secretion pathway protein K YP_005928979.1 1231850 D 931281 CDS YP_005928980.1 386010703 12519327 complement(1232934..1235009) 1 NC_017530.1 UxpB 1235009 uxpB 12519327 uxpB Pseudomonas putida BIRD-1 UxpB YP_005928980.1 1232934 R 931281 CDS YP_005928981.1 386010704 12519328 1235221..1236873 1 NC_017530.1 lipoprotein UxpA; UxpA 1236873 uxpA 12519328 uxpA Pseudomonas putida BIRD-1 UxpA YP_005928981.1 1235221 D 931281 CDS YP_005928982.1 386010705 12519329 1236873..1237295 1 NC_017530.1 type II secretion pathway protein XcpP; XcpP 1237295 xcpP 12519329 xcpP Pseudomonas putida BIRD-1 XcpP YP_005928982.1 1236873 D 931281 CDS YP_005928983.1 386010706 12519330 1237299..1239053 1 NC_017530.1 General secretion pathway protein D 1239053 12519330 PPUBIRD1_1096 Pseudomonas putida BIRD-1 General secretion pathway protein D YP_005928983.1 1237299 D 931281 CDS YP_005928984.1 386010707 12519331 1239053..1240501 1 NC_017530.1 Type II secretion system protein E 1240501 12519331 PPUBIRD1_1097 Pseudomonas putida BIRD-1 Type II secretion system protein E YP_005928984.1 1239053 D 931281 CDS YP_005928985.1 386010708 12519332 1240505..1241707 1 NC_017530.1 general secretion pathway protein F; XcpS 1241707 xcpS 12519332 xcpS Pseudomonas putida BIRD-1 XcpS YP_005928985.1 1240505 D 931281 CDS YP_005928986.1 386010709 12519333 1241725..1242159 1 NC_017530.1 General secretion pathway protein G 1242159 12519333 PPUBIRD1_1099 Pseudomonas putida BIRD-1 General secretion pathway protein G YP_005928986.1 1241725 D 931281 CDS YP_005928987.1 386010710 12519334 1242162..1242593 1 NC_017530.1 General secretion pathway protein H 1242593 12519334 PPUBIRD1_1100 Pseudomonas putida BIRD-1 General secretion pathway protein H YP_005928987.1 1242162 D 931281 CDS YP_005928988.1 386010711 12519335 1242590..1242958 1 NC_017530.1 type II secretion system protein I/J; XcpV 1242958 xcpV 12519335 xcpV Pseudomonas putida BIRD-1 XcpV YP_005928988.1 1242590 D 931281 CDS YP_005928989.1 386010712 12519336 1242955..1243545 1 NC_017530.1 hypothetical protein 1243545 12519336 PPUBIRD1_1102 Pseudomonas putida BIRD-1 hypothetical protein YP_005928989.1 1242955 D 931281 CDS YP_005928990.1 386010713 12519337 1243542..1244618 1 NC_017530.1 general secretion pathway protein L; XcpY 1244618 xcpY 12519337 xcpY Pseudomonas putida BIRD-1 XcpY YP_005928990.1 1243542 D 931281 CDS YP_005928991.1 386010714 12519338 1244615..1245001 1 NC_017530.1 type II secretion pathway protein XcpZ; XcpZ 1245001 xcpZ 12519338 xcpZ Pseudomonas putida BIRD-1 XcpZ YP_005928991.1 1244615 D 931281 CDS YP_005928992.1 386010715 12519339 1244998..1245660 1 NC_017530.1 hypothetical protein 1245660 12519339 PPUBIRD1_1105 Pseudomonas putida BIRD-1 hypothetical protein YP_005928992.1 1244998 D 931281 CDS YP_005928993.1 386010716 12519340 complement(1246080..1246841) 1 NC_017530.1 FAD-binding 9, siderophore-interacting domain-containing protein 1246841 12519340 PPUBIRD1_1106 Pseudomonas putida BIRD-1 FAD-binding 9, siderophore-interacting domain-containing protein YP_005928993.1 1246080 R 931281 CDS YP_005928994.1 386010717 12519341 complement(1246834..1247379) 1 NC_017530.1 PadR family transcriptional regulator 1247379 12519341 PPUBIRD1_1107 Pseudomonas putida BIRD-1 PadR family transcriptional regulator YP_005928994.1 1246834 R 931281 CDS YP_005928995.1 386010718 12519342 complement(1247469..1250618) 1 NC_017530.1 hypothetical protein 1250618 12519342 PPUBIRD1_1108 Pseudomonas putida BIRD-1 hypothetical protein YP_005928995.1 1247469 R 931281 CDS YP_005928996.1 386010719 12519343 1251010..1252428 1 NC_017530.1 Amino acid permease-associated region 1252428 12519343 PPUBIRD1_1109 Pseudomonas putida BIRD-1 Amino acid permease-associated region YP_005928996.1 1251010 D 931281 CDS YP_005928997.1 386010720 12519344 complement(1252465..1254084) 1 NC_017530.1 glutamate synthase (NADPH) 1254084 12519344 PPUBIRD1_1110 Pseudomonas putida BIRD-1 glutamate synthase (NADPH) YP_005928997.1 1252465 R 931281 CDS YP_005928998.1 386010721 12519345 complement(1254332..1258612) 1 NC_017530.1 DEAD/DEAH box helicase 1258612 12519345 PPUBIRD1_1111 Pseudomonas putida BIRD-1 DEAD/DEAH box helicase YP_005928998.1 1254332 R 931281 CDS YP_005928999.1 386010722 12519346 1258749..1259162 1 NC_017530.1 NUDIX hydrolase 1259162 12519346 PPUBIRD1_1112 Pseudomonas putida BIRD-1 NUDIX hydrolase YP_005928999.1 1258749 D 931281 CDS YP_005929000.1 386010723 12519347 complement(1259146..1260063) 1 NC_017530.1 transcriptional activator MetR; protein MetR 1260063 metR 12519347 metR Pseudomonas putida BIRD-1 protein MetR YP_005929000.1 1259146 R 931281 CDS YP_005929001.1 386010724 12519348 1260259..1261254 1 NC_017530.1 Alpha/beta fold family hydrolase 1261254 12519348 PPUBIRD1_1114 Pseudomonas putida BIRD-1 Alpha/beta fold family hydrolase YP_005929001.1 1260259 D 931281 CDS YP_005929002.1 386010725 12519349 complement(1261372..1261707) 1 NC_017530.1 GlpM family protein 1261707 12519349 PPUBIRD1_1115 Pseudomonas putida BIRD-1 GlpM family protein YP_005929002.1 1261372 R 931281 CDS YP_005929003.1 386010726 12519350 complement(1261732..1263060) 1 NC_017530.1 Two component, sigma54 specific, transcriptional regulator, Fis family 1263060 12519350 PPUBIRD1_1116 Pseudomonas putida BIRD-1 Two component, sigma54 specific, transcriptional regulator, Fis family YP_005929003.1 1261732 R 931281 CDS YP_005929004.1 386010727 12519351 complement(1263057..1264895) 1 NC_017530.1 Integral membrane sensor signal transduction histidine kinase 1264895 12519351 PPUBIRD1_1117 Pseudomonas putida BIRD-1 Integral membrane sensor signal transduction histidine kinase YP_005929004.1 1263057 R 931281 CDS YP_005929005.1 386010728 12519352 complement(1265030..1265764) 1 NC_017530.1 ABC transporter 1265764 12519352 PPUBIRD1_1118 Pseudomonas putida BIRD-1 ABC transporter YP_005929005.1 1265030 R 931281 CDS YP_005929006.1 386010729 12519353 complement(1265761..1266432) 1 NC_017530.1 Polar amino acid ABC transporter, inner membrane subunit 1266432 12519353 PPUBIRD1_1119 Pseudomonas putida BIRD-1 Polar amino acid ABC transporter, inner membrane subunit YP_005929006.1 1265761 R 931281 CDS YP_005929007.1 386010730 12519354 complement(1266433..1267179) 1 NC_017530.1 Polar amino acid ABC transporter inner membrane subunit 1267179 12519354 PPUBIRD1_1120 Pseudomonas putida BIRD-1 Polar amino acid ABC transporter inner membrane subunit YP_005929007.1 1266433 R 931281 CDS YP_005929008.1 386010731 12519355 complement(1267325..1268242) 1 NC_017530.1 Extracellular solute-binding protein 1268242 12519355 PPUBIRD1_1121 Pseudomonas putida BIRD-1 Extracellular solute-binding protein YP_005929008.1 1267325 R 931281 CDS YP_005929009.1 386010732 12519356 1268575..1272897 1 NC_017530.1 Leucine-rich repeat-containing protein 1272897 12519356 PPUBIRD1_1122 Pseudomonas putida BIRD-1 Leucine-rich repeat-containing protein YP_005929009.1 1268575 D 931281 CDS YP_005929010.1 386010733 12519357 complement(1272925..1274463) 1 NC_017530.1 Glycerol-3-phosphate dehydrogenase; protein GlpD 1274463 glpD 12519357 glpD Pseudomonas putida BIRD-1 protein GlpD YP_005929010.1 1272925 R 931281 CDS YP_005929011.1 386010734 12519358 complement(1274686..1275441) 1 NC_017530.1 DeoR family transcriptional regulator 1275441 12519358 PPUBIRD1_1124 Pseudomonas putida BIRD-1 DeoR family transcriptional regulator YP_005929011.1 1274686 R 931281 CDS YP_005929012.1 386010735 12519359 complement(1275543..1277042) 1 NC_017530.1 Glycerol kinase; protein GlpK 1277042 glpK 12519359 glpK Pseudomonas putida BIRD-1 protein GlpK YP_005929012.1 1275543 R 931281 CDS YP_005929013.1 386010736 12519360 complement(1277094..1277945) 1 NC_017530.1 MIP family channel protein; protein GlpF 1277945 glpF 12519360 glpF Pseudomonas putida BIRD-1 protein GlpF YP_005929013.1 1277094 R 931281 CDS YP_005929014.1 386010737 12519361 1278248..1278718 1 NC_017530.1 hypothetical protein 1278718 12519361 PPUBIRD1_1127 Pseudomonas putida BIRD-1 hypothetical protein YP_005929014.1 1278248 D 931281 CDS YP_005929015.1 386010738 12519362 complement(1278756..1279865) 1 NC_017530.1 ABC transporter ATP-binding protein 1279865 12519362 PPUBIRD1_1128 Pseudomonas putida BIRD-1 ABC transporter ATP-binding protein YP_005929015.1 1278756 R 931281 CDS YP_005929016.1 386010739 12519363 complement(1279862..1280782) 1 NC_017530.1 ornithine carbamoyltransferase 1280782 12519363 PPUBIRD1_1129 Pseudomonas putida BIRD-1 ornithine carbamoyltransferase YP_005929016.1 1279862 R 931281 CDS YP_005929017.1 386010740 12519364 1281156..1283264 1 NC_017530.1 molybdopterin dinucleotide-binding protein 1283264 12519364 PPUBIRD1_1130 Pseudomonas putida BIRD-1 molybdopterin dinucleotide-binding protein YP_005929017.1 1281156 D 931281 CDS YP_005929018.1 386010741 12519365 1283356..1283691 1 NC_017530.1 Glutaredoxin-like protein 1283691 12519365 PPUBIRD1_1131 Pseudomonas putida BIRD-1 Glutaredoxin-like protein YP_005929018.1 1283356 D 931281 CDS YP_005929019.1 386010742 12519366 complement(1283749..1284222) 1 NC_017530.1 bacterioferritin; Bfr 1284222 bfr 12519366 bfr Pseudomonas putida BIRD-1 Bfr YP_005929019.1 1283749 R 931281 CDS YP_005929020.1 386010743 12519367 complement(1284422..1284640) 1 NC_017530.1 BFD (2Fe-2S)-binding domain-containing protein 1284640 12519367 PPUBIRD1_1133 Pseudomonas putida BIRD-1 BFD (2Fe-2S)-binding domain-containing protein YP_005929020.1 1284422 R 931281 CDS YP_005929021.1 386010744 12519368 1284865..1285467 1 NC_017530.1 Anti-oxidant AhpCTSA family protein 1285467 12519368 PPUBIRD1_1134 Pseudomonas putida BIRD-1 Anti-oxidant AhpCTSA family protein YP_005929021.1 1284865 D 931281 CDS YP_005929022.1 386010745 12519369 complement(1285627..1286301) 1 NC_017530.1 Ribonuclease T 1286301 12519369 PPUBIRD1_1135 Pseudomonas putida BIRD-1 Ribonuclease T YP_005929022.1 1285627 R 931281 CDS YP_005929023.1 386010746 12519370 complement(1286298..1287344) 1 NC_017530.1 Dihydroorotase; protein PyrC 1287344 pyrC 12519370 pyrC Pseudomonas putida BIRD-1 protein PyrC YP_005929023.1 1286298 R 931281 CDS YP_005929024.1 386010747 12519371 1287475..1288455 1 NC_017530.1 OmpA/MotB domain-containing protein 1288455 12519371 PPUBIRD1_1137 Pseudomonas putida BIRD-1 OmpA/MotB domain-containing protein YP_005929024.1 1287475 D 931281 CDS YP_005929025.1 386010748 12519372 1288765..1289982 1 NC_017530.1 Argininosuccinate synthase; protein ArgG 1289982 argG 12519372 argG Pseudomonas putida BIRD-1 protein ArgG YP_005929025.1 1288765 D 931281 CDS YP_005929026.1 386010749 12519373 complement(1290050..1290532) 1 NC_017530.1 hypothetical protein 1290532 12519373 PPUBIRD1_1139 Pseudomonas putida BIRD-1 hypothetical protein YP_005929026.1 1290050 R 931281 CDS YP_005929027.1 386010750 12519374 1290901..1291524 1 NC_017530.1 Two component LuxR family transcriptional regulator 1291524 12519374 PPUBIRD1_1140 Pseudomonas putida BIRD-1 Two component LuxR family transcriptional regulator YP_005929027.1 1290901 D 931281 CDS YP_005929028.1 386010751 12519375 complement(1291594..1291770) 1 NC_017530.1 hypothetical protein 1291770 12519375 PPUBIRD1_1141 Pseudomonas putida BIRD-1 hypothetical protein YP_005929028.1 1291594 R 931281 CDS YP_005929029.1 386010752 12519376 complement(1291875..1292513) 1 NC_017530.1 Endonuclease III 1292513 12519376 PPUBIRD1_1142 Pseudomonas putida BIRD-1 Endonuclease III YP_005929029.1 1291875 R 931281 CDS YP_005929030.1 386010753 12519377 complement(1292518..1293042) 1 NC_017530.1 hypothetical protein 1293042 12519377 PPUBIRD1_1143 Pseudomonas putida BIRD-1 hypothetical protein YP_005929030.1 1292518 R 931281 CDS YP_005929031.1 386010754 12519378 complement(1293035..1293616) 1 NC_017530.1 Electron transport complex, RnfABCDGE type, G subunit 1293616 12519378 PPUBIRD1_1144 Pseudomonas putida BIRD-1 Electron transport complex, RnfABCDGE type, G subunit YP_005929031.1 1293035 R 931281 CDS YP_005929032.1 386010755 12519379 complement(1293634..1294605) 1 NC_017530.1 Electron transport complex, RnfABCDGE type, D subunit 1294605 12519379 PPUBIRD1_1145 Pseudomonas putida BIRD-1 Electron transport complex, RnfABCDGE type, D subunit YP_005929032.1 1293634 R 931281 CDS YP_005929033.1 386010756 12519380 complement(1294602..1295150) 1 NC_017530.1 hypothetical protein 1295150 12519380 PPUBIRD1_1146 Pseudomonas putida BIRD-1 hypothetical protein YP_005929033.1 1294602 R 931281 CDS YP_005929034.1 386010757 12519381 complement(1295257..1297296) 1 NC_017530.1 methionyl-tRNA synthetase 1297296 12519381 PPUBIRD1_1147 Pseudomonas putida BIRD-1 methionyl-tRNA synthetase YP_005929034.1 1295257 R 931281 CDS YP_005929035.1 386010758 12519382 1297455..1298549 1 NC_017530.1 hypothetical protein 1298549 12519382 PPUBIRD1_1148 Pseudomonas putida BIRD-1 hypothetical protein YP_005929035.1 1297455 D 931281 CDS YP_005929036.1 386010759 12519383 complement(1298809..1299018) 1 NC_017530.1 cold-shock domain-contain protein; CapB 1299018 capB 12519383 capB Pseudomonas putida BIRD-1 CapB YP_005929036.1 1298809 R 931281 CDS YP_005929037.1 386010760 12519384 1299346..1299912 1 NC_017530.1 Deoxycytidine triphosphate deaminase; Dcd 1299912 dcd 12519384 dcd Pseudomonas putida BIRD-1 Dcd YP_005929037.1 1299346 D 931281 CDS YP_005929038.1 386010761 12519385 1299977..1300234 1 NC_017530.1 hypothetical protein 1300234 12519385 PPUBIRD1_1151 Pseudomonas putida BIRD-1 hypothetical protein YP_005929038.1 1299977 D 931281 CDS YP_005929039.1 386010762 12519386 complement(1300241..1300891) 1 NC_017530.1 ICC-like phosphoesterase 1300891 12519386 PPUBIRD1_1152 Pseudomonas putida BIRD-1 ICC-like phosphoesterase YP_005929039.1 1300241 R 931281 CDS YP_005929040.1 386010763 12519387 complement(1300888..1303338) 1 NC_017530.1 DEAD/DEAH box helicase 1303338 12519387 PPUBIRD1_1153 Pseudomonas putida BIRD-1 DEAD/DEAH box helicase YP_005929040.1 1300888 R 931281 CDS YP_005929041.1 386010764 12519388 complement(1303406..1304521) 1 NC_017530.1 succinylglutamate desuccinylase 1304521 12519388 PPUBIRD1_1154 Pseudomonas putida BIRD-1 succinylglutamate desuccinylase YP_005929041.1 1303406 R 931281 CDS YP_005929042.1 386010765 12519389 complement(1304635..1306293) 1 NC_017530.1 ATP-dependent DNA ligase 1306293 12519389 PPUBIRD1_1155 Pseudomonas putida BIRD-1 ATP-dependent DNA ligase YP_005929042.1 1304635 R 931281 CDS YP_005929043.1 386010766 12519390 complement(1306290..1307306) 1 NC_017530.1 RNA processing exonuclease 1307306 12519390 PPUBIRD1_1156 Pseudomonas putida BIRD-1 RNA processing exonuclease YP_005929043.1 1306290 R 931281 CDS YP_005929044.1 386010767 12519391 complement(1307433..1309874) 1 NC_017530.1 Acyl-homoserine lactone acylase quiP 1309874 12519391 PPUBIRD1_1157 Pseudomonas putida BIRD-1 Acyl-homoserine lactone acylase quiP YP_005929044.1 1307433 R 931281 CDS YP_005929045.1 386010768 12519392 complement(1309960..1311318) 1 NC_017530.1 GntR family transcriptional regulator 1311318 12519392 PPUBIRD1_1158 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005929045.1 1309960 R 931281 CDS YP_005929046.1 386010769 12519393 1311499..1312203 1 NC_017530.1 Serine O-acetyltransferase 1312203 12519393 PPUBIRD1_1159 Pseudomonas putida BIRD-1 Serine O-acetyltransferase YP_005929046.1 1311499 D 931281 CDS YP_005929047.1 386010770 12519394 1312200..1312988 1 NC_017530.1 Synthetase, putative 1312988 12519394 PPUBIRD1_1160 Pseudomonas putida BIRD-1 Synthetase, putative YP_005929047.1 1312200 D 931281 CDS YP_005929048.1 386010771 12519395 1312985..1314196 1 NC_017530.1 Major facilitator superfamily MFS_1 1314196 12519395 PPUBIRD1_1161 Pseudomonas putida BIRD-1 Major facilitator superfamily MFS_1 YP_005929048.1 1312985 D 931281 CDS YP_005929049.1 386010772 12519396 1314193..1315095 1 NC_017530.1 Pyridoxal-phosphate dependent enzyme family protein 1315095 12519396 PPUBIRD1_1162 Pseudomonas putida BIRD-1 Pyridoxal-phosphate dependent enzyme family protein YP_005929049.1 1314193 D 931281 CDS YP_005929050.1 386010773 12519397 complement(1315258..1315455) 1 NC_017530.1 preprotein translocase subunit SecA; protein SecA 1315455 secA 12519397 secA Pseudomonas putida BIRD-1 protein SecA YP_005929050.1 1315258 R 931281 CDS YP_005929051.1 386010774 12519398 complement(1315463..1315936) 1 NC_017530.1 Putative lipoprotein 1315936 12519398 PPUBIRD1_1164 Pseudomonas putida BIRD-1 Putative lipoprotein YP_005929051.1 1315463 R 931281 CDS YP_005929052.1 386010775 12519399 complement(1315939..1316418) 1 NC_017530.1 hypothetical protein 1316418 12519399 PPUBIRD1_1165 Pseudomonas putida BIRD-1 hypothetical protein YP_005929052.1 1315939 R 931281 CDS YP_005929053.1 386010776 12519400 complement(1316418..1316912) 1 NC_017530.1 hypothetical protein 1316912 12519400 PPUBIRD1_1166 Pseudomonas putida BIRD-1 hypothetical protein YP_005929053.1 1316418 R 931281 CDS YP_005929054.1 386010777 12519401 1317072..1317764 1 NC_017530.1 OmpA/MotB domain-containing protein 1317764 12519401 PPUBIRD1_1167 Pseudomonas putida BIRD-1 OmpA/MotB domain-containing protein YP_005929054.1 1317072 D 931281 CDS YP_005929055.1 386010778 12519402 1317853..1318572 1 NC_017530.1 OmpA/MotB domain-containing protein 1318572 12519402 PPUBIRD1_1168 Pseudomonas putida BIRD-1 OmpA/MotB domain-containing protein YP_005929055.1 1317853 D 931281 CDS YP_005929056.1 386010779 12519403 1318671..1318946 1 NC_017530.1 hypothetical protein 1318946 12519403 PPUBIRD1_1169 Pseudomonas putida BIRD-1 hypothetical protein YP_005929056.1 1318671 D 931281 CDS YP_005929057.1 386010780 12519404 complement(1319063..1319527) 1 NC_017530.1 hypothetical protein 1319527 12519404 PPUBIRD1_1170 Pseudomonas putida BIRD-1 hypothetical protein YP_005929057.1 1319063 R 931281 CDS YP_005929058.1 386010781 12519405 1319626..1321770 1 NC_017530.1 ATP-dependent DNA helicase DinG; DinG 1321770 dinG 12519405 dinG Pseudomonas putida BIRD-1 DinG YP_005929058.1 1319626 D 931281 CDS YP_005929059.1 386010782 12519406 1321850..1324084 1 NC_017530.1 Beta-agarase 1324084 12519406 PPUBIRD1_1172 Pseudomonas putida BIRD-1 Beta-agarase YP_005929059.1 1321850 D 931281 CDS YP_005929060.1 386010783 12519407 1324218..1325363 1 NC_017530.1 Beta-lactamase 1325363 12519407 PPUBIRD1_1173 Pseudomonas putida BIRD-1 Beta-lactamase YP_005929060.1 1324218 D 931281 CDS YP_005929061.1 386010784 12519408 1325463..1326440 1 NC_017530.1 OmpA/MotB domain-containing protein 1326440 12519408 PPUBIRD1_1174 Pseudomonas putida BIRD-1 OmpA/MotB domain-containing protein YP_005929061.1 1325463 D 931281 CDS YP_005929062.1 386010785 12519409 1326460..1327107 1 NC_017530.1 pyridoxine/pyridoxamine 5'-phosphate oxidase 1327107 12519409 PPUBIRD1_1175 Pseudomonas putida BIRD-1 pyridoxine/pyridoxamine 5'-phosphate oxidase YP_005929062.1 1326460 D 931281 CDS YP_005929063.1 386010786 12519410 complement(1327148..1327381) 1 NC_017530.1 hypothetical protein 1327381 12519410 PPUBIRD1_1176 Pseudomonas putida BIRD-1 hypothetical protein YP_005929063.1 1327148 R 931281 CDS YP_005929064.1 386010787 12519411 1327529..1327993 1 NC_017530.1 17 kDa surface antigen 1327993 12519411 PPUBIRD1_1177 Pseudomonas putida BIRD-1 17 kDa surface antigen YP_005929064.1 1327529 D 931281 CDS YP_005929065.1 386010788 12519412 complement(1328063..1329238) 1 NC_017530.1 Na(+)/H(+) antiporter nhaA 1; NhaA 1329238 nhaA 12519412 nhaA Pseudomonas putida BIRD-1 NhaA YP_005929065.1 1328063 R 931281 CDS YP_005929066.1 386010789 12519413 complement(1329533..1331140) 1 NC_017530.1 FAD dependent oxidoreductase 1331140 12519413 PPUBIRD1_1179 Pseudomonas putida BIRD-1 FAD dependent oxidoreductase YP_005929066.1 1329533 R 931281 CDS YP_005929067.1 386010790 12519414 complement(1331244..1331918) 1 NC_017530.1 Membrane protein-like protein 1331918 12519414 PPUBIRD1_1180 Pseudomonas putida BIRD-1 Membrane protein-like protein YP_005929067.1 1331244 R 931281 CDS YP_005929068.1 386010791 12519415 complement(1332006..1332707) 1 NC_017530.1 branched chain amino acid ABC transporter ATP-binding protein; BraG 1332707 braG 12519415 braG Pseudomonas putida BIRD-1 BraG YP_005929068.1 1332006 R 931281 CDS YP_005929069.1 386010792 12519416 complement(1332708..1333475) 1 NC_017530.1 leucine/isoleucine/valine transporter ATP-binding subunit; LivG 1333475 livG 12519416 livG Pseudomonas putida BIRD-1 LivG YP_005929069.1 1332708 R 931281 CDS YP_005929070.1 386010793 12519417 complement(1333472..1334728) 1 NC_017530.1 leucine/isoleucine/valine transporter permease subunit; LivM 1334728 livM 12519417 livM Pseudomonas putida BIRD-1 LivM YP_005929070.1 1333472 R 931281 CDS YP_005929071.1 386010794 12519418 complement(1334725..1335648) 1 NC_017530.1 Inner-membrane translocator 1335648 12519418 PPUBIRD1_1184 Pseudomonas putida BIRD-1 Inner-membrane translocator YP_005929071.1 1334725 R 931281 CDS YP_005929072.1 386010795 12519419 complement(1335834..1336949) 1 NC_017530.1 extracellular ligand-binding receptor; BraC 1336949 braC 12519419 braC Pseudomonas putida BIRD-1 BraC YP_005929072.1 1335834 R 931281 CDS YP_005929073.1 386010796 12519420 1337309..1337620 1 NC_017530.1 hypothetical protein 1337620 12519420 PPUBIRD1_1186 Pseudomonas putida BIRD-1 hypothetical protein YP_005929073.1 1337309 D 931281 CDS YP_005929074.1 386010797 12519421 complement(1338600..1340864) 1 NC_017530.1 diguanylate cyclase 1340864 12519421 PPUBIRD1_1187 Pseudomonas putida BIRD-1 diguanylate cyclase YP_005929074.1 1338600 R 931281 CDS YP_005929075.1 386010798 12519422 complement(1341142..1343988) 1 NC_017530.1 RNA polymerase-associated protein rapA; HepA 1343988 hepA 12519422 hepA Pseudomonas putida BIRD-1 HepA YP_005929075.1 1341142 R 931281 CDS YP_005929076.1 386010799 12519423 1344139..1344834 1 NC_017530.1 hypothetical protein 1344834 12519423 PPUBIRD1_1189 Pseudomonas putida BIRD-1 hypothetical protein YP_005929076.1 1344139 D 931281 CDS YP_005929077.1 386010800 12519424 1344898..1345227 1 NC_017530.1 hypothetical protein 1345227 12519424 PPUBIRD1_1190 Pseudomonas putida BIRD-1 hypothetical protein YP_005929077.1 1344898 D 931281 CDS YP_005929078.1 386010801 12519425 1345296..1345457 1 NC_017530.1 hypothetical protein 1345457 12519425 PPUBIRD1_1191 Pseudomonas putida BIRD-1 hypothetical protein YP_005929078.1 1345296 D 931281 CDS YP_005929079.1 386010802 12519426 1345593..1345709 1 NC_017530.1 hypothetical protein 1345709 12519426 PPUBIRD1_1192 Pseudomonas putida BIRD-1 hypothetical protein YP_005929079.1 1345593 D 931281 CDS YP_005929080.1 386010803 12519427 1345915..1347903 1 NC_017530.1 Fusaric acid resistance protein region 1347903 12519427 PPUBIRD1_1193 Pseudomonas putida BIRD-1 Fusaric acid resistance protein region YP_005929080.1 1345915 D 931281 CDS YP_005929081.1 386010804 12519428 1347890..1348096 1 NC_017530.1 Pfam07869, DUF1656, Protein of unknown function (DUF1656); hypothetical protein 1348096 12519428 PPUBIRD1_1194 Pseudomonas putida BIRD-1 hypothetical protein YP_005929081.1 1347890 D 931281 CDS YP_005929082.1 386010805 12519429 1348109..1348978 1 NC_017530.1 Secretion protein HlyD family protein 1348978 12519429 PPUBIRD1_1195 Pseudomonas putida BIRD-1 Secretion protein HlyD family protein YP_005929082.1 1348109 D 931281 CDS YP_005929083.1 386010806 12519430 1349202..1349540 1 NC_017530.1 hypothetical protein 1349540 12519430 PPUBIRD1_1196 Pseudomonas putida BIRD-1 hypothetical protein YP_005929083.1 1349202 D 931281 CDS YP_005929084.1 386010807 12519431 complement(1349555..1352140) 1 NC_017530.1 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 1352140 12519431 PPUBIRD1_1197 Pseudomonas putida BIRD-1 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) YP_005929084.1 1349555 R 931281 CDS YP_005929085.1 386010808 12519432 complement(1352192..1353265) 1 NC_017530.1 Diguanylate cyclase 1353265 12519432 PPUBIRD1_1198 Pseudomonas putida BIRD-1 Diguanylate cyclase YP_005929085.1 1352192 R 931281 CDS YP_005929086.1 386010809 12519433 complement(1353547..1354443) 1 NC_017530.1 Formate/nitrate transporter 1354443 12519433 PPUBIRD1_1199 Pseudomonas putida BIRD-1 Formate/nitrate transporter YP_005929086.1 1353547 R 931281 CDS YP_005929087.1 386010810 12519437 1360189..1361469 1 NC_017530.1 Acetolactate synthase 1361469 12519437 PPUBIRD1_1200 Pseudomonas putida BIRD-1 Acetolactate synthase YP_005929087.1 1360189 D 931281 CDS YP_005929088.1 386010811 12519438 1361448..1361831 1 NC_017530.1 Acetolactate synthase 1361831 12519438 PPUBIRD1_1201 Pseudomonas putida BIRD-1 Acetolactate synthase YP_005929088.1 1361448 D 931281 CDS YP_005929089.1 386010812 12519439 1361975..1363909 1 NC_017530.1 Amine oxidase 1363909 12519439 PPUBIRD1_1202 Pseudomonas putida BIRD-1 Amine oxidase YP_005929089.1 1361975 D 931281 CDS YP_005929090.1 386010813 12519440 1364055..1364951 1 NC_017530.1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1364951 12519440 PPUBIRD1_1203 Pseudomonas putida BIRD-1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_005929090.1 1364055 D 931281 CDS YP_005929091.1 386010814 12519441 1364962..1366116 1 NC_017530.1 hypothetical protein 1366116 12519441 PPUBIRD1_1204 Pseudomonas putida BIRD-1 hypothetical protein YP_005929091.1 1364962 D 931281 CDS YP_005929092.1 386010815 12519442 1366113..1367102 1 NC_017530.1 asparaginase/glutaminase 1367102 12519442 PPUBIRD1_1205 Pseudomonas putida BIRD-1 asparaginase/glutaminase YP_005929092.1 1366113 D 931281 CDS YP_005929093.1 386010816 12519443 1367194..1367745 1 NC_017530.1 Metal-binding protein 1367745 12519443 PPUBIRD1_1206 Pseudomonas putida BIRD-1 Metal-binding protein YP_005929093.1 1367194 D 931281 CDS YP_005929094.1 386010817 12519444 1367919..1368548 1 NC_017530.1 glutathione S-transferase 1368548 12519444 PPUBIRD1_1207 Pseudomonas putida BIRD-1 glutathione S-transferase YP_005929094.1 1367919 D 931281 CDS YP_005929095.1 386010818 12519445 1368576..1370612 1 NC_017530.1 Oxidoreductase, FAD-binding protein 1370612 12519445 PPUBIRD1_1208 Pseudomonas putida BIRD-1 Oxidoreductase, FAD-binding protein YP_005929095.1 1368576 D 931281 CDS YP_005929096.1 386010819 12519446 1370721..1371617 1 NC_017530.1 LysR family transcriptional regulator 1371617 12519446 PPUBIRD1_1209 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005929096.1 1370721 D 931281 CDS YP_005929097.1 386010820 12519447 complement(1371690..1372559) 1 NC_017530.1 aldose 1-epimerase 1372559 12519447 PPUBIRD1_1210 Pseudomonas putida BIRD-1 aldose 1-epimerase YP_005929097.1 1371690 R 931281 CDS YP_005929098.1 386010821 12519448 complement(1372584..1373507) 1 NC_017530.1 hypothetical protein 1373507 12519448 PPUBIRD1_1211 Pseudomonas putida BIRD-1 hypothetical protein YP_005929098.1 1372584 R 931281 CDS YP_005929099.1 386010822 12519449 complement(1373562..1374842) 1 NC_017530.1 TRAP dicarboxylate transporter subunit DctM 1374842 12519449 PPUBIRD1_1212 Pseudomonas putida BIRD-1 TRAP dicarboxylate transporter subunit DctM YP_005929099.1 1373562 R 931281 CDS YP_005929100.1 386010823 12519450 complement(1374843..1375370) 1 NC_017530.1 TRAP dicarboxylate transporter, DctQ subunit, putative 1375370 12519450 PPUBIRD1_1213 Pseudomonas putida BIRD-1 TRAP dicarboxylate transporter, DctQ subunit, putative YP_005929100.1 1374843 R 931281 CDS YP_005929101.1 386010824 12519451 complement(1375437..1376408) 1 NC_017530.1 TRAP dicarboxylate transporter, DctP subunit; DctP 1376408 dctP 12519451 dctP Pseudomonas putida BIRD-1 DctP YP_005929101.1 1375437 R 931281 CDS YP_005929102.1 386010825 12519452 complement(1376473..1377354) 1 NC_017530.1 SMP-30/gluconolaconase/LRE domain protein 1377354 12519452 PPUBIRD1_1215 Pseudomonas putida BIRD-1 SMP-30/gluconolaconase/LRE domain protein YP_005929102.1 1376473 R 931281 CDS YP_005929103.1 386010826 12519453 complement(1377377..1378183) 1 NC_017530.1 NAD-dependent epimerase/dehydratase 1378183 12519453 PPUBIRD1_1216 Pseudomonas putida BIRD-1 NAD-dependent epimerase/dehydratase YP_005929103.1 1377377 R 931281 CDS YP_005929104.1 386010827 12519454 complement(1378589..1379827) 1 NC_017530.1 Outer membrane porin 1379827 12519454 PPUBIRD1_1217 Pseudomonas putida BIRD-1 Outer membrane porin YP_005929104.1 1378589 R 931281 CDS YP_005929105.1 386010828 12519455 complement(1380578..1381828) 1 NC_017530.1 ribonucleotide-diphosphate reductase subunit beta; protein NrdB 1381828 nrdB 12519455 nrdB Pseudomonas putida BIRD-1 protein NrdB YP_005929105.1 1380578 R 931281 CDS YP_005929106.1 386010829 12519456 complement(1382269..1382400) 1 NC_017530.1 hypothetical protein 1382400 12519456 PPUBIRD1_1219 Pseudomonas putida BIRD-1 hypothetical protein YP_005929106.1 1382269 R 931281 CDS YP_005929107.1 386010830 12519457 complement(1382540..1385419) 1 NC_017530.1 Ribonucleoside-diphosphate reductase subunit alpha; protein NrdA 1385419 nrdA 12519457 nrdA Pseudomonas putida BIRD-1 protein NrdA YP_005929107.1 1382540 R 931281 CDS YP_005929108.1 386010831 12519458 1385513..1385776 1 NC_017530.1 hypothetical protein 1385776 12519458 PPUBIRD1_1221 Pseudomonas putida BIRD-1 hypothetical protein YP_005929108.1 1385513 D 931281 CDS YP_005929109.1 386010832 12519459 1386169..1386867 1 NC_017530.1 Two component transcriptional regulator 1386867 12519459 PPUBIRD1_1222 Pseudomonas putida BIRD-1 Two component transcriptional regulator YP_005929109.1 1386169 D 931281 CDS YP_005929110.1 386010833 12519460 1386864..1388471 1 NC_017530.1 Integral membrane sensor signal transduction histidine kinase 1388471 12519460 PPUBIRD1_1223 Pseudomonas putida BIRD-1 Integral membrane sensor signal transduction histidine kinase YP_005929110.1 1386864 D 931281 CDS YP_005929111.1 386010834 12519461 complement(1388475..1389104) 1 NC_017530.1 4'-phosphopantetheinyl transferase 1389104 12519461 PPUBIRD1_1224 Pseudomonas putida BIRD-1 4'-phosphopantetheinyl transferase YP_005929111.1 1388475 R 931281 CDS YP_005929112.1 386010835 12519462 complement(1389422..1390213) 1 NC_017530.1 Dienelactone hydrolase 1390213 12519462 PPUBIRD1_1225 Pseudomonas putida BIRD-1 Dienelactone hydrolase YP_005929112.1 1389422 R 931281 CDS YP_005929113.1 386010836 12519463 1390343..1390948 1 NC_017530.1 outer membrane protein H1; OprH 1390948 oprH 12519463 oprH Pseudomonas putida BIRD-1 OprH YP_005929113.1 1390343 D 931281 CDS YP_005929114.1 386010837 12519464 1391036..1391713 1 NC_017530.1 Two component transcriptional regulator 1391713 12519464 PPUBIRD1_1227 Pseudomonas putida BIRD-1 Two component transcriptional regulator YP_005929114.1 1391036 D 931281 CDS YP_005929115.1 386010838 12519465 1391710..1393056 1 NC_017530.1 integral membrane sensor signal transduction histidine kinase; protein PhoQ 1393056 phoQ 12519465 phoQ Pseudomonas putida BIRD-1 protein PhoQ YP_005929115.1 1391710 D 931281 CDS YP_005929116.1 386010839 12519466 1393408..1394730 1 NC_017530.1 C4-dicarboxylate transport protein; protein DctA 1394730 dctA 12519466 dctA Pseudomonas putida BIRD-1 protein DctA YP_005929116.1 1393408 D 931281 CDS YP_005929117.1 386010840 12519467 complement(1394927..1395619) 1 NC_017530.1 hypothetical protein 1395619 12519467 PPUBIRD1_1230 Pseudomonas putida BIRD-1 hypothetical protein YP_005929117.1 1394927 R 931281 CDS YP_005929118.1 386010841 12519468 complement(1395626..1396087) 1 NC_017530.1 hypothetical protein 1396087 12519468 PPUBIRD1_1231 Pseudomonas putida BIRD-1 hypothetical protein YP_005929118.1 1395626 R 931281 CDS YP_005929119.1 386010842 12519469 complement(1396137..1396847) 1 NC_017530.1 RNA-binding S4 domain-containing protein 1396847 12519469 PPUBIRD1_1232 Pseudomonas putida BIRD-1 RNA-binding S4 domain-containing protein YP_005929119.1 1396137 R 931281 CDS YP_005929120.1 386010843 12519470 complement(1396967..1397422) 1 NC_017530.1 Acetyltransferase 1397422 12519470 PPUBIRD1_1233 Pseudomonas putida BIRD-1 Acetyltransferase YP_005929120.1 1396967 R 931281 CDS YP_005929121.1 386010844 12519471 complement(1397580..1398911) 1 NC_017530.1 Ribosomal protein S12 methylthiotransferase rimO; RimO 1398911 rimO 12519471 rimO Pseudomonas putida BIRD-1 RimO YP_005929121.1 1397580 R 931281 CDS YP_005929122.1 386010845 12519472 1399210..1401057 1 NC_017530.1 potassium transport system protein kup 1401057 12519472 PPUBIRD1_1236 Pseudomonas putida BIRD-1 potassium transport system protein kup YP_005929122.1 1399210 D 931281 CDS YP_005929123.1 386010846 12519473 complement(1401106..1402398) 1 NC_017530.1 Virulence factor family protein 1402398 12519473 PPUBIRD1_1237 Pseudomonas putida BIRD-1 Virulence factor family protein YP_005929123.1 1401106 R 931281 CDS YP_005929124.1 386010847 12519474 complement(1402398..1404983) 1 NC_017530.1 hypothetical protein 1404983 12519474 PPUBIRD1_1238 Pseudomonas putida BIRD-1 hypothetical protein YP_005929124.1 1402398 R 931281 CDS YP_005929125.1 386010848 12519477 1405804..1406868 1 NC_017530.1 DNA polymerase IV; DinP 1406868 dinP 12519477 dinP Pseudomonas putida BIRD-1 DinP YP_005929125.1 1405804 D 931281 CDS YP_005929126.1 386010849 12519478 complement(1406895..1407848) 1 NC_017530.1 Putative lipoprotein 1407848 12519478 PPUBIRD1_1240 Pseudomonas putida BIRD-1 Putative lipoprotein YP_005929126.1 1406895 R 931281 CDS YP_005929127.1 386010850 12519479 complement(1407869..1409584) 1 NC_017530.1 Prolyl-tRNA synthetase; protein ProS 1409584 proS 12519479 proS Pseudomonas putida BIRD-1 protein ProS YP_005929127.1 1407869 R 931281 CDS YP_005929128.1 386010851 12519480 complement(1409745..1411028) 1 NC_017530.1 putative outer membrane protein D; OprD 1411028 oprD 12519480 oprD Pseudomonas putida BIRD-1 OprD YP_005929128.1 1409745 R 931281 CDS YP_005929129.1 386010852 12519481 1411720..1412139 1 NC_017530.1 Histidine triad (HIT) protein 1412139 12519481 PPUBIRD1_1244 Pseudomonas putida BIRD-1 Histidine triad (HIT) protein YP_005929129.1 1411720 D 931281 CDS YP_005929130.1 386010853 12519482 1412159..1412347 1 NC_017530.1 hypothetical protein 1412347 12519482 PPUBIRD1_1245 Pseudomonas putida BIRD-1 hypothetical protein YP_005929130.1 1412159 D 931281 CDS YP_005929131.1 386010854 12519483 complement(1412469..1413062) 1 NC_017530.1 Cold-shock DNA-binding domain-containing protein 1413062 12519483 PPUBIRD1_1246 Pseudomonas putida BIRD-1 Cold-shock DNA-binding domain-containing protein YP_005929131.1 1412469 R 931281 CDS YP_005929132.1 386010855 12519484 1413344..1413817 1 NC_017530.1 ferritin Dps family protein 1413817 12519484 PPUBIRD1_1247 Pseudomonas putida BIRD-1 ferritin Dps family protein YP_005929132.1 1413344 D 931281 CDS YP_005929133.1 386010856 12519485 1414029..1414358 1 NC_017530.1 hypothetical protein 1414358 12519485 PPUBIRD1_1248 Pseudomonas putida BIRD-1 hypothetical protein YP_005929133.1 1414029 D 931281 CDS YP_005929134.1 386010857 12519486 1414453..1414674 1 NC_017530.1 hypothetical protein 1414674 12519486 PPUBIRD1_1249 Pseudomonas putida BIRD-1 hypothetical protein YP_005929134.1 1414453 D 931281 CDS YP_005929135.1 386010858 12519487 1414768..1416543 1 NC_017530.1 Aspartyl-tRNA synthetase; protein AspS 1416543 aspS 12519487 aspS Pseudomonas putida BIRD-1 protein AspS YP_005929135.1 1414768 D 931281 CDS YP_005929136.1 386010859 12519488 1416658..1417404 1 NC_017530.1 hypothetical protein 1417404 12519488 PPUBIRD1_1251 Pseudomonas putida BIRD-1 hypothetical protein YP_005929136.1 1416658 D 931281 CDS YP_005929137.1 386010860 12519489 1417590..1418114 1 NC_017530.1 Crossover junction endodeoxyribonuclease ruvC; protein RuvC 1418114 ruvC 12519489 ruvC Pseudomonas putida BIRD-1 protein RuvC YP_005929137.1 1417590 D 931281 CDS YP_005929138.1 386010861 12519490 1418224..1418841 1 NC_017530.1 Holliday junction ATP-dependent DNA helicase ruvA; RuvA 1418841 ruvA 12519490 ruvA Pseudomonas putida BIRD-1 RuvA YP_005929138.1 1418224 D 931281 CDS YP_005929139.1 386010862 12519491 1418838..1419884 1 NC_017530.1 Holliday junction ATP-dependent DNA helicase ruvB; protein RuvB 1419884 ruvB 12519491 ruvB Pseudomonas putida BIRD-1 protein RuvB YP_005929139.1 1418838 D 931281 CDS YP_005929140.1 386010863 12519492 1420010..1420462 1 NC_017530.1 hypothetical protein 1420462 12519492 PPUBIRD1_1255 Pseudomonas putida BIRD-1 hypothetical protein YP_005929140.1 1420010 D 931281 CDS YP_005929141.1 386010864 12519493 1420465..1421160 1 NC_017530.1 biopolymer transport protein TolQ; TolQ 1421160 tolQ 12519493 tolQ Pseudomonas putida BIRD-1 TolQ YP_005929141.1 1420465 D 931281 CDS YP_005929142.1 386010865 12519494 1421175..1421627 1 NC_017530.1 biopolymer transport protein TolR; TolR 1421627 tolR 12519494 tolR Pseudomonas putida BIRD-1 TolR YP_005929142.1 1421175 D 931281 CDS YP_005929143.1 386010866 12519495 1421627..1422013 1 NC_017530.1 Protein TolA 1422013 12519495 PPUBIRD1_1258 Pseudomonas putida BIRD-1 Protein TolA YP_005929143.1 1421627 D 931281 CDS YP_005929144.1 386010867 12519496 1422399..1422746 1 NC_017530.1 Protein TolA 1422746 12519496 PPUBIRD1_1259 Pseudomonas putida BIRD-1 Protein TolA YP_005929144.1 1422399 D 931281 CDS YP_005929145.1 386010868 12519497 1422773..1424044 1 NC_017530.1 Protein tolB; TolB 1424044 tolB 12519497 tolB Pseudomonas putida BIRD-1 TolB YP_005929145.1 1422773 D 931281 CDS YP_005929146.1 386010869 12519498 1424099..1424599 1 NC_017530.1 Peptidoglycan-associated lipoprotein; OprL 1424599 oprL 12519498 oprL Pseudomonas putida BIRD-1 OprL YP_005929146.1 1424099 D 931281 CDS YP_005929147.1 386010870 12519499 1424612..1425412 1 NC_017530.1 hypothetical protein 1425412 12519499 PPUBIRD1_1262 Pseudomonas putida BIRD-1 hypothetical protein YP_005929147.1 1424612 D 931281 CDS YP_005929148.1 386010871 12519500 1425581..1426228 1 NC_017530.1 radical SAM protein 1426228 12519500 PPUBIRD1_1263 Pseudomonas putida BIRD-1 radical SAM protein YP_005929148.1 1425581 D 931281 CDS YP_005929149.1 386010872 12519501 1426246..1426920 1 NC_017530.1 7-cyano-7-deazaguanine synthase; ExsB protein 1426920 exsB 12519501 exsB Pseudomonas putida BIRD-1 ExsB protein YP_005929149.1 1426246 D 931281 CDS YP_005929150.1 386010873 12519503 complement(1427153..1428112) 1 NC_017530.1 Cation efflux protein 1428112 12519503 PPUBIRD1_1265 Pseudomonas putida BIRD-1 Cation efflux protein YP_005929150.1 1427153 R 931281 CDS YP_005929151.1 386010874 12519504 complement(1428167..1430233) 1 NC_017530.1 Methyl-accepting chemotaxis transducer 1430233 12519504 PPUBIRD1_1266 Pseudomonas putida BIRD-1 Methyl-accepting chemotaxis transducer YP_005929151.1 1428167 R 931281 CDS YP_005929152.1 386010875 12519505 complement(1430300..1431652) 1 NC_017530.1 amino acid ABC transporter permease 1431652 12519505 PPUBIRD1_1267 Pseudomonas putida BIRD-1 amino acid ABC transporter permease YP_005929152.1 1430300 R 931281 CDS YP_005929153.1 386010876 12519506 1431985..1433607 1 NC_017530.1 hypothetical protein 1433607 12519506 PPUBIRD1_1268 Pseudomonas putida BIRD-1 hypothetical protein YP_005929153.1 1431985 D 931281 CDS YP_005929154.1 386010877 12519507 1433882..1434940 1 NC_017530.1 Quinolinate synthase A; NadA protein 1434940 nadA 12519507 nadA Pseudomonas putida BIRD-1 NadA protein YP_005929154.1 1433882 D 931281 CDS YP_005929155.1 386010878 12519508 complement(1435049..1436485) 1 NC_017530.1 Peptidase M48 Ste24p 1436485 12519508 PPUBIRD1_1270 Pseudomonas putida BIRD-1 Peptidase M48 Ste24p YP_005929155.1 1435049 R 931281 CDS YP_005929156.1 386010879 12519509 1436608..1436847 1 NC_017530.1 SirA family protein 1436847 12519509 PPUBIRD1_1271 Pseudomonas putida BIRD-1 SirA family protein YP_005929156.1 1436608 D 931281 CDS YP_005929157.1 386010880 12519510 1436868..1437938 1 NC_017530.1 hypothetical protein 1437938 12519510 PPUBIRD1_1272 Pseudomonas putida BIRD-1 hypothetical protein YP_005929157.1 1436868 D 931281 CDS YP_005929158.1 386010881 12519511 complement(1438037..1438510) 1 NC_017530.1 Alkyl hydroperoxide reductase/thiol specific antioxidant/ Mal allergen 1438510 12519511 PPUBIRD1_1273 Pseudomonas putida BIRD-1 Alkyl hydroperoxide reductase/thiol specific antioxidant/ Mal allergen YP_005929158.1 1438037 R 931281 CDS YP_005929159.1 386010882 12519512 complement(1438522..1439082) 1 NC_017530.1 Glycine cleavage system transcriptional repressor, putative 1439082 12519512 PPUBIRD1_1274 Pseudomonas putida BIRD-1 Glycine cleavage system transcriptional repressor, putative YP_005929159.1 1438522 R 931281 CDS YP_005929160.1 386010883 12519513 1439342..1440229 1 NC_017530.1 dihydrodipicolinate synthase; DapA_2 1440229 dapA_2 12519513 dapA_2 Pseudomonas putida BIRD-1 DapA_2 YP_005929160.1 1439342 D 931281 CDS YP_005929161.1 386010884 12519514 1440245..1441366 1 NC_017530.1 hypothetical protein 1441366 12519514 PPUBIRD1_1276 Pseudomonas putida BIRD-1 hypothetical protein YP_005929161.1 1440245 D 931281 CDS YP_005929162.1 386010885 12519515 1441367..1442125 1 NC_017530.1 Beta-lactamase domain-containing protein 1442125 12519515 PPUBIRD1_1277 Pseudomonas putida BIRD-1 Beta-lactamase domain-containing protein YP_005929162.1 1441367 D 931281 CDS YP_005929163.1 386010886 12519516 1442156..1442866 1 NC_017530.1 Phosphoribosylaminoimidazole-succinocarboxamide synthase; PurC 1442866 purC 12519516 purC Pseudomonas putida BIRD-1 PurC YP_005929163.1 1442156 D 931281 CDS YP_005929164.1 386010887 12519518 complement(1443146..1443496) 1 NC_017530.1 Putative transcriptional regulator 1443496 12519518 PPUBIRD1_1279 Pseudomonas putida BIRD-1 Putative transcriptional regulator YP_005929164.1 1443146 R 931281 CDS YP_005929165.1 386010888 12519519 complement(1443853..1444125) 1 NC_017530.1 hypothetical protein 1444125 12519519 PPUBIRD1_1280 Pseudomonas putida BIRD-1 hypothetical protein YP_005929165.1 1443853 R 931281 CDS YP_005929166.1 386010889 12519520 complement(1444262..1444525) 1 NC_017530.1 hypothetical protein 1444525 12519520 PPUBIRD1_1281 Pseudomonas putida BIRD-1 hypothetical protein YP_005929166.1 1444262 R 931281 CDS YP_005929167.1 386010890 12519521 complement(1444844..1445167) 1 NC_017530.1 hypothetical protein 1445167 12519521 PPUBIRD1_1282 Pseudomonas putida BIRD-1 hypothetical protein YP_005929167.1 1444844 R 931281 CDS YP_005929168.1 386010891 12519522 1445168..1446028 1 NC_017530.1 hypothetical protein 1446028 12519522 PPUBIRD1_1283 Pseudomonas putida BIRD-1 hypothetical protein YP_005929168.1 1445168 D 931281 CDS YP_005929169.1 386010892 12519523 1446037..1447938 1 NC_017530.1 hypothetical protein 1447938 12519523 PPUBIRD1_1284 Pseudomonas putida BIRD-1 hypothetical protein YP_005929169.1 1446037 D 931281 CDS YP_005929170.1 386010893 12519524 1447949..1449157 1 NC_017530.1 hypothetical protein 1449157 12519524 PPUBIRD1_1285 Pseudomonas putida BIRD-1 hypothetical protein YP_005929170.1 1447949 D 931281 CDS YP_005929171.1 386010894 12519525 complement(1449257..1449955) 1 NC_017530.1 Amino acid transporter LysE 1449955 12519525 PPUBIRD1_1286 Pseudomonas putida BIRD-1 Amino acid transporter LysE YP_005929171.1 1449257 R 931281 CDS YP_005929172.1 386010895 12519526 1450065..1450256 1 NC_017530.1 hypothetical protein 1450256 12519526 PPUBIRD1_1287 Pseudomonas putida BIRD-1 hypothetical protein YP_005929172.1 1450065 D 931281 CDS YP_005929173.1 386010896 12519527 1450585..1452222 1 NC_017530.1 Malate dehydrogenase(quinone) 2; Mqo2 1452222 mqo2 12519527 mqo2 Pseudomonas putida BIRD-1 Mqo2 YP_005929173.1 1450585 D 931281 CDS YP_005929174.1 386010897 12519528 complement(1452354..1452662) 1 NC_017530.1 ArsR family transcriptional regulator 1452662 12519528 PPUBIRD1_1289 Pseudomonas putida BIRD-1 ArsR family transcriptional regulator YP_005929174.1 1452354 R 931281 CDS YP_005929175.1 386010898 12519529 1452739..1453830 1 NC_017530.1 xenobiotic reductase A; XenA 1453830 xenA 12519529 xenA Pseudomonas putida BIRD-1 XenA YP_005929175.1 1452739 D 931281 CDS YP_005929176.1 386010899 12519530 complement(1453954..1455201) 1 NC_017530.1 FAD dependent oxidoreductase 1455201 12519530 PPUBIRD1_1291 Pseudomonas putida BIRD-1 FAD dependent oxidoreductase YP_005929176.1 1453954 R 931281 CDS YP_005929177.1 386010900 12519531 complement(1455204..1456781) 1 NC_017530.1 Aldehyde dehydrogenase 1456781 12519531 PPUBIRD1_1292 Pseudomonas putida BIRD-1 Aldehyde dehydrogenase YP_005929177.1 1455204 R 931281 CDS YP_005929178.1 386010901 12519532 complement(1456933..1457880) 1 NC_017530.1 Dihydrodipicolinate synthetase 1457880 12519532 PPUBIRD1_1293 Pseudomonas putida BIRD-1 Dihydrodipicolinate synthetase YP_005929178.1 1456933 R 931281 CDS YP_005929179.1 386010902 12519533 complement(1457927..1458853) 1 NC_017530.1 proline racemase 1458853 12519533 PPUBIRD1_1294 Pseudomonas putida BIRD-1 proline racemase YP_005929179.1 1457927 R 931281 CDS YP_005929180.1 386010903 12519534 complement(1458877..1460490) 1 NC_017530.1 amino acid ABC transporter permease 1460490 12519534 PPUBIRD1_1295 Pseudomonas putida BIRD-1 amino acid ABC transporter permease YP_005929180.1 1458877 R 931281 CDS YP_005929181.1 386010904 12519535 1460869..1461651 1 NC_017530.1 AraC family transcriptional regulator 1461651 12519535 PPUBIRD1_1296 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005929181.1 1460869 D 931281 CDS YP_005929182.1 386010905 12519536 complement(1461639..1462526) 1 NC_017530.1 LysR family transcriptional regulator 1462526 12519536 PPUBIRD1_1297 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005929182.1 1461639 R 931281 CDS YP_005929183.1 386010906 12519537 1462668..1463186 1 NC_017530.1 molybdenum cofactor biosynthesis protein B; protein MoaB 1463186 moaB 12519537 moaB Pseudomonas putida BIRD-1 protein MoaB YP_005929183.1 1462668 D 931281 CDS YP_005929184.1 386010907 12519538 complement(1463233..1464132) 1 NC_017530.1 hypothetical protein 1464132 12519538 PPUBIRD1_1299 Pseudomonas putida BIRD-1 hypothetical protein YP_005929184.1 1463233 R 931281 CDS YP_005929185.1 386010908 12519539 complement(1464153..1465157) 1 NC_017530.1 Molybdenum cofactor biosynthesis protein A; protein MoaA 1465157 moaA 12519539 moaA Pseudomonas putida BIRD-1 protein MoaA YP_005929185.1 1464153 R 931281 CDS YP_005929186.1 386010909 12519540 1465380..1467710 1 NC_017530.1 Protein ydeP 1467710 12519540 PPUBIRD1_1302 Pseudomonas putida BIRD-1 Protein ydeP YP_005929186.1 1465380 D 931281 CDS YP_005929187.1 386010910 12519541 complement(1467815..1468276) 1 NC_017530.1 AsnC family transcriptional regulator 1468276 12519541 PPUBIRD1_1303 Pseudomonas putida BIRD-1 AsnC family transcriptional regulator YP_005929187.1 1467815 R 931281 CDS YP_005929188.1 386010911 12519542 1468291..1469550 1 NC_017530.1 cystathionine gamma-lyase 1469550 12519542 PPUBIRD1_1304 Pseudomonas putida BIRD-1 cystathionine gamma-lyase YP_005929188.1 1468291 D 931281 CDS YP_005929189.1 386010912 12519543 complement(1469612..1469848) 1 NC_017530.1 hypothetical protein 1469848 12519543 PPUBIRD1_1305 Pseudomonas putida BIRD-1 hypothetical protein YP_005929189.1 1469612 R 931281 CDS YP_005929190.1 386010913 12519544 1470101..1471738 1 NC_017530.1 hypothetical protein 1471738 12519544 PPUBIRD1_1306 Pseudomonas putida BIRD-1 hypothetical protein YP_005929190.1 1470101 D 931281 CDS YP_005929191.1 386010914 12519545 1471928..1473061 1 NC_017530.1 ribonuclease D; Rnd 1473061 rnd 12519545 rnd Pseudomonas putida BIRD-1 Rnd YP_005929191.1 1471928 D 931281 CDS YP_005929192.1 386010915 12519546 1473058..1473351 1 NC_017530.1 hypothetical protein 1473351 12519546 PPUBIRD1_1308 Pseudomonas putida BIRD-1 hypothetical protein YP_005929192.1 1473058 D 931281 CDS YP_005929193.1 386010916 12519547 1473354..1474286 1 NC_017530.1 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein 1474286 12519547 PPUBIRD1_1309 Pseudomonas putida BIRD-1 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein YP_005929193.1 1473354 D 931281 CDS YP_005929194.1 386010917 12519548 complement(1474400..1474993) 1 NC_017530.1 Nitroreductase 1474993 12519548 PPUBIRD1_1310 Pseudomonas putida BIRD-1 Nitroreductase YP_005929194.1 1474400 R 931281 CDS YP_005929195.1 386010918 12519549 1475138..1475587 1 NC_017530.1 hypothetical protein 1475587 12519549 PPUBIRD1_1311 Pseudomonas putida BIRD-1 hypothetical protein YP_005929195.1 1475138 D 931281 CDS YP_005929196.1 386010919 12519550 1475629..1476837 1 NC_017530.1 hypothetical protein 1476837 12519550 PPUBIRD1_1312 Pseudomonas putida BIRD-1 hypothetical protein YP_005929196.1 1475629 D 931281 CDS YP_005929197.1 386010920 12519551 complement(1477123..1477593) 1 NC_017530.1 TRNA/rRNA methyltransferase (SpoU) 1477593 12519551 PPUBIRD1_1313 Pseudomonas putida BIRD-1 TRNA/rRNA methyltransferase (SpoU) YP_005929197.1 1477123 R 931281 CDS YP_005929198.1 386010921 12519552 complement(1477664..1478035) 1 NC_017530.1 hypothetical protein 1478035 12519552 PPUBIRD1_1314 Pseudomonas putida BIRD-1 hypothetical protein YP_005929198.1 1477664 R 931281 CDS YP_005929199.1 386010922 12519553 1478168..1478446 1 NC_017530.1 hypothetical protein 1478446 12519553 PPUBIRD1_1315 Pseudomonas putida BIRD-1 hypothetical protein YP_005929199.1 1478168 D 931281 CDS YP_005929200.1 386010923 12519554 complement(1478643..1480685) 1 NC_017530.1 oligopeptidase B 1480685 12519554 PPUBIRD1_1316 Pseudomonas putida BIRD-1 oligopeptidase B YP_005929200.1 1478643 R 931281 CDS YP_005929201.1 386010924 12519555 1480885..1481382 1 NC_017530.1 hypothetical protein 1481382 12519555 PPUBIRD1_1317 Pseudomonas putida BIRD-1 hypothetical protein YP_005929201.1 1480885 D 931281 CDS YP_005929202.1 386010925 12519556 1481397..1482170 1 NC_017530.1 Glutamine amidotransferase, class-II 1482170 12519556 PPUBIRD1_1318 Pseudomonas putida BIRD-1 Glutamine amidotransferase, class-II YP_005929202.1 1481397 D 931281 CDS YP_005929203.1 386010926 12519557 1482180..1482701 1 NC_017530.1 hypothetical protein 1482701 12519557 PPUBIRD1_1319 Pseudomonas putida BIRD-1 hypothetical protein YP_005929203.1 1482180 D 931281 CDS YP_005929204.1 386010927 12519558 complement(1482836..1483849) 1 NC_017530.1 LysR family transcriptional regulator 1483849 12519558 PPUBIRD1_1320 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005929204.1 1482836 R 931281 CDS YP_005929205.1 386010928 12519559 1483878..1485164 1 NC_017530.1 Major facilitator family transporter 1485164 12519559 PPUBIRD1_1321 Pseudomonas putida BIRD-1 Major facilitator family transporter YP_005929205.1 1483878 D 931281 CDS YP_005929206.1 386010929 12519560 1485174..1485950 1 NC_017530.1 hypothetical protein 1485950 12519560 PPUBIRD1_1322 Pseudomonas putida BIRD-1 hypothetical protein YP_005929206.1 1485174 D 931281 CDS YP_005929207.1 386010930 12519561 1485950..1486636 1 NC_017530.1 allophanate hydrolase subunit 1 1486636 12519561 PPUBIRD1_1323 Pseudomonas putida BIRD-1 allophanate hydrolase subunit 1 YP_005929207.1 1485950 D 931281 CDS YP_005929208.1 386010931 12519562 1486633..1487550 1 NC_017530.1 Urea amidolyase related protein 1487550 12519562 PPUBIRD1_1324 Pseudomonas putida BIRD-1 Urea amidolyase related protein YP_005929208.1 1486633 D 931281 CDS YP_005929209.1 386010932 12519563 complement(1487617..1488795) 1 NC_017530.1 hypothetical protein 1488795 12519563 PPUBIRD1_1325 Pseudomonas putida BIRD-1 hypothetical protein YP_005929209.1 1487617 R 931281 CDS YP_005929210.1 386010933 12519564 complement(1488809..1489654) 1 NC_017530.1 AAA ATPase 1489654 12519564 PPUBIRD1_1326 Pseudomonas putida BIRD-1 AAA ATPase YP_005929210.1 1488809 R 931281 CDS YP_005929211.1 386010934 12519565 complement(1489856..1490929) 1 NC_017530.1 hypothetical protein 1490929 12519565 PPUBIRD1_1327 Pseudomonas putida BIRD-1 hypothetical protein YP_005929211.1 1489856 R 931281 CDS YP_005929212.1 386010935 12519566 1491063..1492037 1 NC_017530.1 Cysteine synthase A 1492037 12519566 PPUBIRD1_1328 Pseudomonas putida BIRD-1 Cysteine synthase A YP_005929212.1 1491063 D 931281 CDS YP_005929213.1 386010936 12519567 1492211..1493146 1 NC_017530.1 hypothetical protein 1493146 12519567 PPUBIRD1_1329 Pseudomonas putida BIRD-1 hypothetical protein YP_005929213.1 1492211 D 931281 CDS YP_005929214.1 386010937 12519568 1493581..1494462 1 NC_017530.1 hypothetical protein 1494462 12519568 PPUBIRD1_1330 Pseudomonas putida BIRD-1 hypothetical protein YP_005929214.1 1493581 D 931281 CDS YP_005929215.1 386010938 12519569 complement(1494466..1494924) 1 NC_017530.1 hypothetical protein 1494924 12519569 PPUBIRD1_1331 Pseudomonas putida BIRD-1 hypothetical protein YP_005929215.1 1494466 R 931281 CDS YP_005929216.1 386010939 12519570 complement(1494938..1495813) 1 NC_017530.1 hypothetical protein 1495813 12519570 PPUBIRD1_1332 Pseudomonas putida BIRD-1 hypothetical protein YP_005929216.1 1494938 R 931281 CDS YP_005929217.1 386010940 12519571 1496019..1497734 1 NC_017530.1 Isocitrate dehydrogenase kinase/phosphatase; AceK 1497734 aceK 12519571 aceK Pseudomonas putida BIRD-1 AceK YP_005929217.1 1496019 D 931281 CDS YP_005929218.1 386010941 12519572 complement(1497754..1498614) 1 NC_017530.1 Putative lipoprotein 1498614 12519572 PPUBIRD1_1334 Pseudomonas putida BIRD-1 Putative lipoprotein YP_005929218.1 1497754 R 931281 CDS YP_005929219.1 386010942 12519573 1498745..1499581 1 NC_017530.1 RNA binding S1 domain-containing protein 1499581 12519573 PPUBIRD1_1335 Pseudomonas putida BIRD-1 RNA binding S1 domain-containing protein YP_005929219.1 1498745 D 931281 CDS YP_005929220.1 386010943 12519574 complement(1499587..1499967) 1 NC_017530.1 hypothetical protein 1499967 12519574 PPUBIRD1_1336 Pseudomonas putida BIRD-1 hypothetical protein YP_005929220.1 1499587 R 931281 CDS YP_005929221.1 386010944 12519575 1500203..1500382 1 NC_017530.1 CsbD-like family protein 1500382 12519575 PPUBIRD1_1337 Pseudomonas putida BIRD-1 CsbD-like family protein YP_005929221.1 1500203 D 931281 CDS YP_005929222.1 386010945 12519576 1500535..1501491 1 NC_017530.1 Putative ribonuclease BN 1501491 12519576 PPUBIRD1_1338 Pseudomonas putida BIRD-1 Putative ribonuclease BN YP_005929222.1 1500535 D 931281 CDS YP_005929223.1 386010946 12519577 1501491..1502027 1 NC_017530.1 Peptide deformylase 2; Def_2 1502027 def_2 12519577 def_2 Pseudomonas putida BIRD-1 Def_2 YP_005929223.1 1501491 D 931281 CDS YP_005929224.1 386010947 12519578 1502705..1502962 1 NC_017530.1 hypothetical protein 1502962 12519578 PPUBIRD1_1340 Pseudomonas putida BIRD-1 hypothetical protein YP_005929224.1 1502705 D 931281 CDS YP_005929225.1 386010948 12519579 1503154..1503579 1 NC_017530.1 hypothetical protein 1503579 12519579 PPUBIRD1_1341 Pseudomonas putida BIRD-1 hypothetical protein YP_005929225.1 1503154 D 931281 CDS YP_005929226.1 386010949 12519580 1503624..1503968 1 NC_017530.1 DGPFAETKE family protein 1503968 12519580 PPUBIRD1_1342 Pseudomonas putida BIRD-1 DGPFAETKE family protein YP_005929226.1 1503624 D 931281 CDS YP_005929227.1 386010950 12519581 1503990..1504475 1 NC_017530.1 Activator of Hsp90 ATPase 1 family protein 1504475 12519581 PPUBIRD1_1343 Pseudomonas putida BIRD-1 Activator of Hsp90 ATPase 1 family protein YP_005929227.1 1503990 D 931281 CDS YP_005929228.1 386010951 12519582 1504475..1505713 1 NC_017530.1 RNA polymerase ECF-subfamily sigma factor 1505713 12519582 PPUBIRD1_1344 Pseudomonas putida BIRD-1 RNA polymerase ECF-subfamily sigma factor YP_005929228.1 1504475 D 931281 CDS YP_005929229.1 386010952 12519583 complement(1505833..1506303) 1 NC_017530.1 MaoC domain protein dehydratase; PhaJ1 1506303 phaJ1 12519583 phaJ1 Pseudomonas putida BIRD-1 PhaJ1 YP_005929229.1 1505833 R 931281 CDS YP_005929230.1 386010953 12519584 complement(1506338..1507282) 1 NC_017530.1 Alpha/beta fold family hydrolase 1507282 12519584 PPUBIRD1_1346 Pseudomonas putida BIRD-1 Alpha/beta fold family hydrolase YP_005929230.1 1506338 R 931281 CDS YP_005929231.1 386010954 12519585 1507501..1509189 1 NC_017530.1 acyl-CoA synthetase; FadD2 1509189 fadD2 12519585 fadD2 Pseudomonas putida BIRD-1 FadD2 YP_005929231.1 1507501 D 931281 CDS YP_005929232.1 386010955 12519586 1509521..1511218 1 NC_017530.1 long-chain-fatty-acid--CoA ligase 1511218 12519586 PPUBIRD1_1349 Pseudomonas putida BIRD-1 long-chain-fatty-acid--CoA ligase YP_005929232.1 1509521 D 931281 CDS YP_005929233.1 386010956 12519587 complement(1511504..1512811) 1 NC_017530.1 FAD dependent oxidoreductase 1512811 12519587 PPUBIRD1_1350 Pseudomonas putida BIRD-1 FAD dependent oxidoreductase YP_005929233.1 1511504 R 931281 CDS YP_005929234.1 386010957 12519588 complement(1512836..1514215) 1 NC_017530.1 Glutamate--putrescine ligase 1514215 12519588 PPUBIRD1_1351 Pseudomonas putida BIRD-1 Glutamate--putrescine ligase YP_005929234.1 1512836 R 931281 CDS YP_005929235.1 386010958 12519589 1514772..1518677 1 NC_017530.1 ATP-dependent RNA helicase hrpA 1518677 12519589 PPUBIRD1_1352 Pseudomonas putida BIRD-1 ATP-dependent RNA helicase hrpA YP_005929235.1 1514772 D 931281 CDS YP_005929236.1 386010959 12519590 1518852..1519973 1 NC_017530.1 3-oxoacyl-ACP synthase 1519973 12519590 PPUBIRD1_1353 Pseudomonas putida BIRD-1 3-oxoacyl-ACP synthase YP_005929236.1 1518852 D 931281 CDS YP_005929237.1 386010960 12519591 complement(1520172..1521416) 1 NC_017530.1 hypothetical protein 1521416 12519591 PPUBIRD1_1354 Pseudomonas putida BIRD-1 hypothetical protein YP_005929237.1 1520172 R 931281 CDS YP_005929238.1 386010961 12519592 1521787..1522806 1 NC_017530.1 hypothetical protein 1522806 12519592 PPUBIRD1_1356 Pseudomonas putida BIRD-1 hypothetical protein YP_005929238.1 1521787 D 931281 CDS YP_005929239.1 386010962 12519593 complement(1522912..1524744) 1 NC_017530.1 ABC transporter 1524744 12519593 PPUBIRD1_1357 Pseudomonas putida BIRD-1 ABC transporter YP_005929239.1 1522912 R 931281 CDS YP_005929240.1 386010963 12519594 complement(1524809..1525366) 1 NC_017530.1 peptidyl-prolyl cis-trans isomerase A; PpiA 1525366 ppiA 12519594 ppiA Pseudomonas putida BIRD-1 PpiA YP_005929240.1 1524809 R 931281 CDS YP_005929241.1 386010964 12519595 complement(1525360..1526172) 1 NC_017530.1 Alpha/beta hydrolase fold project 1526172 12519595 PPUBIRD1_1359 Pseudomonas putida BIRD-1 Alpha/beta hydrolase fold project YP_005929241.1 1525360 R 931281 CDS YP_005929242.1 386010965 12519596 complement(1526186..1527109) 1 NC_017530.1 LysR family transcriptional regulator 1527109 12519596 PPUBIRD1_1360 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005929242.1 1526186 R 931281 CDS YP_005929243.1 386010966 12519597 1527158..1527472 1 NC_017530.1 hypothetical protein 1527472 12519597 PPUBIRD1_1361 Pseudomonas putida BIRD-1 hypothetical protein YP_005929243.1 1527158 D 931281 CDS YP_005929244.1 386010967 12519598 1527584..1528183 1 NC_017530.1 FMN-dependent NADH-azoreductase 2 1528183 12519598 PPUBIRD1_1362 Pseudomonas putida BIRD-1 FMN-dependent NADH-azoreductase 2 YP_005929244.1 1527584 D 931281 CDS YP_005929245.1 386010968 12519599 1528439..1529314 1 NC_017530.1 Carboxylate/amino acid/amine transporter 1529314 12519599 PPUBIRD1_1363 Pseudomonas putida BIRD-1 Carboxylate/amino acid/amine transporter YP_005929245.1 1528439 D 931281 CDS YP_005929246.1 386010969 12519600 complement(1529356..1530657) 1 NC_017530.1 mechanosensitive ion channel protein MscS 1530657 12519600 PPUBIRD1_1364 Pseudomonas putida BIRD-1 mechanosensitive ion channel protein MscS YP_005929246.1 1529356 R 931281 CDS YP_005929247.1 386010970 12519601 1530800..1532122 1 NC_017530.1 DEAD/DEAH box helicase 1532122 12519601 PPUBIRD1_1366 Pseudomonas putida BIRD-1 DEAD/DEAH box helicase YP_005929247.1 1530800 D 931281 CDS YP_005929248.1 386010971 12519602 complement(1532194..1532466) 1 NC_017530.1 hypothetical protein 1532466 12519602 PPUBIRD1_1367 Pseudomonas putida BIRD-1 hypothetical protein YP_005929248.1 1532194 R 931281 CDS YP_005929249.1 386010972 12519603 1532682..1532960 1 NC_017530.1 hypothetical protein 1532960 12519603 PPUBIRD1_1368 Pseudomonas putida BIRD-1 hypothetical protein YP_005929249.1 1532682 D 931281 CDS YP_005929250.1 386010973 12519604 1532938..1533192 1 NC_017530.1 hypothetical protein 1533192 12519604 PPUBIRD1_1369 Pseudomonas putida BIRD-1 hypothetical protein YP_005929250.1 1532938 D 931281 CDS YP_005929251.1 386010974 12519605 1533269..1533664 1 NC_017530.1 hypothetical protein 1533664 12519605 PPUBIRD1_1370 Pseudomonas putida BIRD-1 hypothetical protein YP_005929251.1 1533269 D 931281 CDS YP_005929252.1 386010975 12519606 1533770..1534696 1 NC_017530.1 hypothetical protein 1534696 12519606 PPUBIRD1_1371 Pseudomonas putida BIRD-1 hypothetical protein YP_005929252.1 1533770 D 931281 CDS YP_005929253.1 386010976 12519607 complement(1534715..1535887) 1 NC_017530.1 hypothetical protein 1535887 12519607 PPUBIRD1_1372 Pseudomonas putida BIRD-1 hypothetical protein YP_005929253.1 1534715 R 931281 CDS YP_005929254.1 386010977 12519608 1535992..1536885 1 NC_017530.1 LysR family transcriptional regulator 1536885 12519608 PPUBIRD1_1373 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005929254.1 1535992 D 931281 CDS YP_005929255.1 386010978 12519609 1537010..1537138 1 NC_017530.1 hypothetical protein 1537138 12519609 PPUBIRD1_1374 Pseudomonas putida BIRD-1 hypothetical protein YP_005929255.1 1537010 D 931281 CDS YP_005929256.1 386010979 12519610 complement(1537266..1538645) 1 NC_017530.1 Na+/solute symporter 1538645 12519610 PPUBIRD1_1375 Pseudomonas putida BIRD-1 Na+/solute symporter YP_005929256.1 1537266 R 931281 CDS YP_005929257.1 386010980 12519611 complement(1538778..1539728) 1 NC_017530.1 Agmatinase 1539728 12519611 PPUBIRD1_1376 Pseudomonas putida BIRD-1 Agmatinase YP_005929257.1 1538778 R 931281 CDS YP_005929258.1 386010981 12519612 1539954..1540847 1 NC_017530.1 LysR family transcriptional regulator 1540847 12519612 PPUBIRD1_1377 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005929258.1 1539954 D 931281 CDS YP_005929259.1 386010982 12519613 1540985..1542550 1 NC_017530.1 methyl-accepting chemotaxis sensory transducer 1542550 12519613 PPUBIRD1_1378 Pseudomonas putida BIRD-1 methyl-accepting chemotaxis sensory transducer YP_005929259.1 1540985 D 931281 CDS YP_005929260.1 386010983 12519614 1542695..1543294 1 NC_017530.1 DTW domain-containing protein 1543294 12519614 PPUBIRD1_1379 Pseudomonas putida BIRD-1 DTW domain-containing protein YP_005929260.1 1542695 D 931281 CDS YP_005929261.1 386010984 12519615 complement(1543355..1544704) 1 NC_017530.1 TolC family type I secretion outer membrane protein 1544704 12519615 PPUBIRD1_1380 Pseudomonas putida BIRD-1 TolC family type I secretion outer membrane protein YP_005929261.1 1543355 R 931281 CDS YP_005929262.1 386010985 12519616 complement(1545025..1545390) 1 NC_017530.1 hypothetical protein 1545390 12519616 PPUBIRD1_1381 Pseudomonas putida BIRD-1 hypothetical protein YP_005929262.1 1545025 R 931281 CDS YP_005929263.1 386010986 12519617 complement(1545398..1545985) 1 NC_017530.1 hypothetical protein 1545985 12519617 PPUBIRD1_1382 Pseudomonas putida BIRD-1 hypothetical protein YP_005929263.1 1545398 R 931281 CDS YP_005929264.1 386010987 12519618 1546217..1548376 1 NC_017530.1 ATP-dependent DNA helicase RecQ; RecQ protein 1548376 recQ 12519618 recQ Pseudomonas putida BIRD-1 RecQ protein YP_005929264.1 1546217 D 931281 CDS YP_005929265.1 386010988 12519619 1548528..1548965 1 NC_017530.1 MarR family transcriptional regulator 1548965 12519619 PPUBIRD1_1385 Pseudomonas putida BIRD-1 MarR family transcriptional regulator YP_005929265.1 1548528 D 931281 CDS YP_005929266.1 386010989 12519620 complement(1548998..1551184) 1 NC_017530.1 patatin 1551184 12519620 PPUBIRD1_1386 Pseudomonas putida BIRD-1 patatin YP_005929266.1 1548998 R 931281 CDS YP_005929267.1 386010990 12519621 1551252..1551533 1 NC_017530.1 hypothetical protein 1551533 12519621 PPUBIRD1_1387 Pseudomonas putida BIRD-1 hypothetical protein YP_005929267.1 1551252 D 931281 CDS YP_005929268.1 386010991 12519622 complement(1551534..1552424) 1 NC_017530.1 hypothetical protein 1552424 12519622 PPUBIRD1_1388 Pseudomonas putida BIRD-1 hypothetical protein YP_005929268.1 1551534 R 931281 CDS YP_005929269.1 386010992 12519623 complement(1552646..1553413) 1 NC_017530.1 AraC family transcriptional regulator 1553413 12519623 PPUBIRD1_1389 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005929269.1 1552646 R 931281 CDS YP_005929270.1 386010993 12519624 1553541..1554338 1 NC_017530.1 Metallophosphoesterase 1554338 12519624 PPUBIRD1_1390 Pseudomonas putida BIRD-1 Metallophosphoesterase YP_005929270.1 1553541 D 931281 CDS YP_005929271.1 386010994 12519625 complement(1554367..1554678) 1 NC_017530.1 hypothetical protein 1554678 12519625 PPUBIRD1_1391 Pseudomonas putida BIRD-1 hypothetical protein YP_005929271.1 1554367 R 931281 CDS YP_005929272.1 386010995 12519626 complement(1555850..1557304) 1 NC_017530.1 TrkH family potassium uptake protein 1557304 12519626 PPUBIRD1_1392 Pseudomonas putida BIRD-1 TrkH family potassium uptake protein YP_005929272.1 1555850 R 931281 CDS YP_005929273.1 386010996 12519627 1557407..1557964 1 NC_017530.1 Nitroreductase 1557964 12519627 PPUBIRD1_1393 Pseudomonas putida BIRD-1 Nitroreductase YP_005929273.1 1557407 D 931281 CDS YP_005929274.1 386010997 12519628 complement(1558094..1559428) 1 NC_017530.1 Integral membrane sensor signal transduction histidine kinase 1559428 12519628 PPUBIRD1_1394 Pseudomonas putida BIRD-1 Integral membrane sensor signal transduction histidine kinase YP_005929274.1 1558094 R 931281 CDS YP_005929275.1 386010998 12519629 complement(1559493..1559909) 1 NC_017530.1 Spy-related protein 1559909 12519629 PPUBIRD1_1395 Pseudomonas putida BIRD-1 Spy-related protein YP_005929275.1 1559493 R 931281 CDS YP_005929276.1 386010999 12519630 complement(1560072..1560749) 1 NC_017530.1 Winged helix family two component transcriptional regulator 1560749 12519630 PPUBIRD1_1396 Pseudomonas putida BIRD-1 Winged helix family two component transcriptional regulator YP_005929276.1 1560072 R 931281 CDS YP_005929277.1 386011000 12519631 complement(1561090..1561389) 1 NC_017530.1 YCII-related domain protein 1561389 12519631 PPUBIRD1_1397 Pseudomonas putida BIRD-1 YCII-related domain protein YP_005929277.1 1561090 R 931281 CDS YP_005929278.1 386011001 12519632 complement(1561391..1562023) 1 NC_017530.1 Intracellular septation protein A 1562023 12519632 PPUBIRD1_1398 Pseudomonas putida BIRD-1 Intracellular septation protein A YP_005929278.1 1561391 R 931281 CDS YP_005929279.1 386011002 12519633 1562139..1562912 1 NC_017530.1 TrpH family protein 1562912 12519633 PPUBIRD1_1399 Pseudomonas putida BIRD-1 TrpH family protein YP_005929279.1 1562139 D 931281 CDS YP_005929280.1 386011003 12519634 1562926..1563555 1 NC_017530.1 Sua5/YciO/YrdC/YwlC family protein 1563555 12519634 PPUBIRD1_1400 Pseudomonas putida BIRD-1 Sua5/YciO/YrdC/YwlC family protein YP_005929280.1 1562926 D 931281 CDS YP_005929281.1 386011004 12519635 1563552..1564406 1 NC_017530.1 Chromosome segregation and condensation protein ScpA 1564406 12519635 PPUBIRD1_1401 Pseudomonas putida BIRD-1 Chromosome segregation and condensation protein ScpA YP_005929281.1 1563552 D 931281 CDS YP_005929282.1 386011005 12519636 1564393..1565160 1 NC_017530.1 hypothetical protein 1565160 12519636 PPUBIRD1_1402 Pseudomonas putida BIRD-1 hypothetical protein YP_005929282.1 1564393 D 931281 CDS YP_005929283.1 386011006 12519637 1565426..1566493 1 NC_017530.1 RNA-binding S4 domain-containing protein 1566493 12519637 PPUBIRD1_1404 Pseudomonas putida BIRD-1 RNA-binding S4 domain-containing protein YP_005929283.1 1565426 D 931281 CDS YP_005929284.1 386011007 12519638 1567150..1568553 1 NC_017530.1 amino acid ABC transporter permease 1568553 12519638 PPUBIRD1_1405 Pseudomonas putida BIRD-1 amino acid ABC transporter permease YP_005929284.1 1567150 D 931281 CDS YP_005929285.1 386011008 12519639 complement(1568802..1569686) 1 NC_017530.1 LysR family transcriptional regulator 1569686 12519639 PPUBIRD1_1406 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005929285.1 1568802 R 931281 CDS YP_005929286.1 386011009 12519640 1569839..1572859 1 NC_017530.1 hypothetical protein 1572859 12519640 PPUBIRD1_1407 Pseudomonas putida BIRD-1 hypothetical protein YP_005929286.1 1569839 D 931281 CDS YP_005929287.1 386011010 12519641 complement(1572992..1574194) 1 NC_017530.1 hypothetical protein 1574194 12519641 PPUBIRD1_1408 Pseudomonas putida BIRD-1 hypothetical protein YP_005929287.1 1572992 R 931281 CDS YP_005929288.1 386011011 12519642 complement(1574285..1578484) 1 NC_017530.1 hypothetical protein 1578484 12519642 PPUBIRD1_1409 Pseudomonas putida BIRD-1 hypothetical protein YP_005929288.1 1574285 R 931281 CDS YP_005929289.1 386011012 12519643 complement(1578960..1579316) 1 NC_017530.1 Pterin-4-alpha-carbinolamine dehydratase; PhhB 1579316 phhB 12519643 phhB Pseudomonas putida BIRD-1 PhhB YP_005929289.1 1578960 R 931281 CDS YP_005929290.1 386011013 12519644 complement(1579356..1580144) 1 NC_017530.1 phenylalanine 4-monooxygenase; PhhA 1580144 phhA 12519644 phhA Pseudomonas putida BIRD-1 PhhA YP_005929290.1 1579356 R 931281 CDS YP_005929291.1 386011014 12519645 1580402..1581961 1 NC_017530.1 transcriptional regulator TyrR; PhhR 1581961 phhR 12519645 phhR Pseudomonas putida BIRD-1 PhhR YP_005929291.1 1580402 D 931281 CDS YP_005929292.1 386011015 12519646 complement(1582110..1582364) 1 NC_017530.1 hypothetical protein 1582364 12519646 PPUBIRD1_1413 Pseudomonas putida BIRD-1 hypothetical protein YP_005929292.1 1582110 R 931281 CDS YP_005929293.1 386011016 12519647 1582762..1584723 1 NC_017530.1 Acetyl-coenzyme A synthetase 1 1584723 12519647 PPUBIRD1_1414 Pseudomonas putida BIRD-1 Acetyl-coenzyme A synthetase 1 YP_005929293.1 1582762 D 931281 CDS YP_005929294.1 386011017 12519648 1585259..1586044 1 NC_017530.1 Cationic amino acid ABC transporter, periplasmic binding protein 1586044 12519648 PPUBIRD1_1415 Pseudomonas putida BIRD-1 Cationic amino acid ABC transporter, periplasmic binding protein YP_005929294.1 1585259 D 931281 CDS YP_005929295.1 386011018 12519649 1586133..1586822 1 NC_017530.1 Polar amino acid ABC transporter inner membrane subunit 1586822 12519649 PPUBIRD1_1416 Pseudomonas putida BIRD-1 Polar amino acid ABC transporter inner membrane subunit YP_005929295.1 1586133 D 931281 CDS YP_005929296.1 386011019 12519650 1586819..1587517 1 NC_017530.1 Polar amino acid ABC transporter inner membrane subunit 1587517 12519650 PPUBIRD1_1417 Pseudomonas putida BIRD-1 Polar amino acid ABC transporter inner membrane subunit YP_005929296.1 1586819 D 931281 CDS YP_005929297.1 386011020 12519651 1587540..1588304 1 NC_017530.1 Basic amino acid ABC transporter, ATP-binding protein 1588304 12519651 PPUBIRD1_1418 Pseudomonas putida BIRD-1 Basic amino acid ABC transporter, ATP-binding protein YP_005929297.1 1587540 D 931281 CDS YP_005929298.1 386011021 12519652 1588403..1589383 1 NC_017530.1 AraC family transcriptional regulator 1589383 12519652 PPUBIRD1_1419 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005929298.1 1588403 D 931281 CDS YP_005929299.1 386011022 12519653 1589796..1591016 1 NC_017530.1 Acetylornithine aminotransferase; protein ArgD 1591016 argD 12519653 argD Pseudomonas putida BIRD-1 protein ArgD YP_005929299.1 1589796 D 931281 CDS YP_005929300.1 386011023 12519654 1591163..1592182 1 NC_017530.1 arginine N-succinyltransferase, alpha subunit; AruF 1592182 aruF 12519654 aruF Pseudomonas putida BIRD-1 AruF YP_005929300.1 1591163 D 931281 CDS YP_005929301.1 386011024 12519655 1592261..1593289 1 NC_017530.1 Arginine N-succinyltransferase 1593289 12519655 PPUBIRD1_1423 Pseudomonas putida BIRD-1 Arginine N-succinyltransferase YP_005929301.1 1592261 D 931281 CDS YP_005929302.1 386011025 12519656 1593290..1594753 1 NC_017530.1 N-succinylglutamate 5-semialdehyde dehydrogenase 1594753 12519656 PPUBIRD1_1424 Pseudomonas putida BIRD-1 N-succinylglutamate 5-semialdehyde dehydrogenase YP_005929302.1 1593290 D 931281 CDS YP_005929303.1 386011026 12519657 1594777..1596126 1 NC_017530.1 N-succinylarginine dihydrolase; AstB 1596126 astB 12519657 astB Pseudomonas putida BIRD-1 AstB YP_005929303.1 1594777 D 931281 CDS YP_005929304.1 386011027 12519658 1596141..1596431 1 NC_017530.1 hypothetical protein 1596431 12519658 PPUBIRD1_1426 Pseudomonas putida BIRD-1 hypothetical protein YP_005929304.1 1596141 D 931281 CDS YP_005929305.1 386011028 12519659 1596442..1597449 1 NC_017530.1 succinylglutamate desuccinylase 1597449 12519659 PPUBIRD1_1427 Pseudomonas putida BIRD-1 succinylglutamate desuccinylase YP_005929305.1 1596442 D 931281 CDS YP_005929306.1 386011029 12519660 complement(1597492..1598685) 1 NC_017530.1 Putative hemolysin-like protein 1598685 12519660 PPUBIRD1_1428 Pseudomonas putida BIRD-1 Putative hemolysin-like protein YP_005929306.1 1597492 R 931281 CDS YP_005929307.1 386011030 12519661 1598993..1601617 1 NC_017530.1 Alanyl-tRNA synthetase; protein AlaS 1601617 alaS 12519661 alaS Pseudomonas putida BIRD-1 protein AlaS YP_005929307.1 1598993 D 931281 CDS YP_005929308.1 386011031 12519662 1601720..1602955 1 NC_017530.1 Aspartokinase 1602955 12519662 PPUBIRD1_1430 Pseudomonas putida BIRD-1 Aspartokinase YP_005929308.1 1601720 D 931281 CDS YP_005929309.1 386011032 12519663 1603123..1603311 1 NC_017530.1 Carbon storage regulator homolog; protein CsrA 1603311 csrA 12519663 csrA Pseudomonas putida BIRD-1 protein CsrA YP_005929309.1 1603123 D 931281 CDS YP_005929310.1 386011033 12519669 1604502..1605944 1 NC_017530.1 magnesium transporter; protein MgtE 1605944 mgtE 12519669 mgtE Pseudomonas putida BIRD-1 protein MgtE YP_005929310.1 1604502 D 931281 CDS YP_005929311.1 386011034 12519670 complement(1606052..1606369) 1 NC_017530.1 Arc domain protein DNA binding domain protein; AlgZ protein 1606369 algZ 12519670 algZ Pseudomonas putida BIRD-1 AlgZ protein YP_005929311.1 1606052 R 931281 CDS YP_005929312.1 386011035 12519671 1606765..1607316 1 NC_017530.1 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; hypothetical protein 1607316 gmk 12519671 gmk Pseudomonas putida BIRD-1 hypothetical protein YP_005929312.1 1606765 D 931281 CDS YP_005929313.1 386011036 12519673 complement(1607587..1608954) 1 NC_017530.1 Amino acid permease-associated region 1608954 12519673 PPUBIRD1_1435 Pseudomonas putida BIRD-1 Amino acid permease-associated region YP_005929313.1 1607587 R 931281 CDS YP_005929314.1 386011037 12519674 complement(1609282..1609809) 1 NC_017530.1 hypothetical protein 1609809 12519674 PPUBIRD1_1436 Pseudomonas putida BIRD-1 hypothetical protein YP_005929314.1 1609282 R 931281 CDS YP_005929315.1 386011038 12519675 1610025..1611023 1 NC_017530.1 Diguanylate cyclase with PAS/PAC sensor 1611023 12519675 PPUBIRD1_1437 Pseudomonas putida BIRD-1 Diguanylate cyclase with PAS/PAC sensor YP_005929315.1 1610025 D 931281 CDS YP_005929316.1 386011039 12519676 complement(1611153..1612532) 1 NC_017530.1 Dihydrolipoyl dehydrogenase; LpdV 1612532 lpdV 12519676 lpdV Pseudomonas putida BIRD-1 LpdV YP_005929316.1 1611153 R 931281 CDS YP_005929317.1 386011040 12519677 complement(1612535..1613806) 1 NC_017530.1 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex; BkdB 1613806 bkdB 12519677 bkdB Pseudomonas putida BIRD-1 BkdB YP_005929317.1 1612535 R 931281 CDS YP_005929318.1 386011041 12519678 complement(1613807..1614865) 1 NC_017530.1 2-oxoisovalerate dehydrogenase subunit beta 1614865 12519678 PPUBIRD1_1440 Pseudomonas putida BIRD-1 2-oxoisovalerate dehydrogenase subunit beta YP_005929318.1 1613807 R 931281 CDS YP_005929319.1 386011042 12519679 complement(1614867..1616099) 1 NC_017530.1 2-oxoisovalerate dehydrogenase subunit alpha 1616099 12519679 PPUBIRD1_1441 Pseudomonas putida BIRD-1 2-oxoisovalerate dehydrogenase subunit alpha YP_005929319.1 1614867 R 931281 CDS YP_005929320.1 386011043 12519680 1616298..1616783 1 NC_017530.1 Bkd operon transcriptional regulator; BkdR 1616783 bkdR 12519680 bkdR Pseudomonas putida BIRD-1 BkdR YP_005929320.1 1616298 D 931281 CDS YP_005929321.1 386011044 12519681 1616959..1618278 1 NC_017530.1 Glutamate--putrescine ligase 1618278 12519681 PPUBIRD1_1443 Pseudomonas putida BIRD-1 Glutamate--putrescine ligase YP_005929321.1 1616959 D 931281 CDS YP_005929322.1 386011045 12519682 1618412..1619752 1 NC_017530.1 Major facilitator transporter 1619752 12519682 PPUBIRD1_1444 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005929322.1 1618412 D 931281 CDS YP_005929323.1 386011046 12519683 complement(1619846..1620589) 1 NC_017530.1 type IV pilus assembly PilZ 1620589 12519683 PPUBIRD1_1445 Pseudomonas putida BIRD-1 type IV pilus assembly PilZ YP_005929323.1 1619846 R 931281 CDS YP_005929324.1 386011047 12519684 complement(1620669..1621136) 1 NC_017530.1 FlgN family protein 1621136 12519684 PPUBIRD1_1446 Pseudomonas putida BIRD-1 FlgN family protein YP_005929324.1 1620669 R 931281 CDS YP_005929325.1 386011048 12519685 complement(1621186..1621500) 1 NC_017530.1 anti-sigma-28 factor, FlgM; protein FlgM 1621500 flgM 12519685 flgM Pseudomonas putida BIRD-1 protein FlgM YP_005929325.1 1621186 R 931281 CDS YP_005929326.1 386011049 12519686 complement(1621665..1622387) 1 NC_017530.1 flagellar basal body P-ring biosynthesis protein FlgA; protein FlgA 1622387 flgA 12519686 flgA Pseudomonas putida BIRD-1 protein FlgA YP_005929326.1 1621665 R 931281 CDS YP_005929327.1 386011050 12519687 1622495..1623424 1 NC_017530.1 chemotaxis protein CheV; CheV_2 1623424 cheV_2 12519687 cheV_2 Pseudomonas putida BIRD-1 CheV_2 YP_005929327.1 1622495 D 931281 CDS YP_005929328.1 386011051 12519688 1623491..1624303 1 NC_017530.1 chemotaxis protein methyltransferase CheR; protein CheR 1624303 cheR 12519688 cheR Pseudomonas putida BIRD-1 protein CheR YP_005929328.1 1623491 D 931281 CDS YP_005929329.1 386011052 12519689 1624774..1625184 1 NC_017530.1 flagellar basal body rod protein FlgB; protein FlgB 1625184 flgB 12519689 flgB Pseudomonas putida BIRD-1 protein FlgB YP_005929329.1 1624774 D 931281 CDS YP_005929330.1 386011053 12519690 1625187..1625630 1 NC_017530.1 flagellar basal body rod protein FlgC; protein FlgC 1625630 flgC 12519690 flgC Pseudomonas putida BIRD-1 protein FlgC YP_005929330.1 1625187 D 931281 CDS YP_005929331.1 386011054 12519691 1625643..1626344 1 NC_017530.1 flagellar basal body rod modification protein; protein FlgD 1626344 flgD 12519691 flgD Pseudomonas putida BIRD-1 protein FlgD YP_005929331.1 1625643 D 931281 CDS YP_005929332.1 386011055 12519692 1626373..1627695 1 NC_017530.1 flagellar hook protein FlgE; protein FlgE 1627695 flgE 12519692 flgE Pseudomonas putida BIRD-1 protein FlgE YP_005929332.1 1626373 D 931281 CDS YP_005929333.1 386011056 12519693 1627767..1627958 1 NC_017530.1 hypothetical protein 1627958 12519693 PPUBIRD1_1455 Pseudomonas putida BIRD-1 hypothetical protein YP_005929333.1 1627767 D 931281 CDS YP_005929334.1 386011057 12519694 1628119..1628859 1 NC_017530.1 Flagellar basal body rod protein FlgF 1628859 12519694 PPUBIRD1_1456 Pseudomonas putida BIRD-1 Flagellar basal body rod protein FlgF YP_005929334.1 1628119 D 931281 CDS YP_005929335.1 386011058 12519695 1628907..1629692 1 NC_017530.1 flagellar basal body rod protein FlgG; protein FlgG 1629692 flgG 12519695 flgG Pseudomonas putida BIRD-1 protein FlgG YP_005929335.1 1628907 D 931281 CDS YP_005929336.1 386011059 12519696 1629729..1630424 1 NC_017530.1 Flagellar L-ring protein; protein FlgH 1630424 flgH 12519696 flgH Pseudomonas putida BIRD-1 protein FlgH YP_005929336.1 1629729 D 931281 CDS YP_005929337.1 386011060 12519697 1630437..1631546 1 NC_017530.1 Flagellar P-ring protein; protein FlgI 1631546 flgI 12519697 flgI Pseudomonas putida BIRD-1 protein FlgI YP_005929337.1 1630437 D 931281 CDS YP_005929338.1 386011061 12519698 1631558..1632712 1 NC_017530.1 peptidoglycan hydrolase; protein FlgJ 1632712 flgJ 12519698 flgJ Pseudomonas putida BIRD-1 protein FlgJ YP_005929338.1 1631558 D 931281 CDS YP_005929339.1 386011062 12519699 1632725..1634767 1 NC_017530.1 flagellar hook-associated protein FlgK; FlgK 1634767 flgK 12519699 flgK Pseudomonas putida BIRD-1 FlgK YP_005929339.1 1632725 D 931281 CDS YP_005929340.1 386011063 12519700 1634781..1636343 1 NC_017530.1 flagellar hook-associated protein FlgL; protein FlgL 1636343 flgL 12519700 flgL Pseudomonas putida BIRD-1 protein FlgL YP_005929340.1 1634781 D 931281 CDS YP_005929341.1 386011064 12519701 1636763..1637692 1 NC_017530.1 Beta-ketoacyl-acyl-carrier-protein synthase I 1637692 12519701 PPUBIRD1_1463 Pseudomonas putida BIRD-1 Beta-ketoacyl-acyl-carrier-protein synthase I YP_005929341.1 1636763 D 931281 CDS YP_005929342.1 386011065 12519702 1638085..1639527 1 NC_017530.1 Flagellin 1639527 12519702 PPUBIRD1_1465 Pseudomonas putida BIRD-1 Flagellin YP_005929342.1 1638085 D 931281 CDS YP_005929343.1 386011066 12519703 1639604..1639960 1 NC_017530.1 Flagellar protein FlaG protein 1639960 12519703 PPUBIRD1_1466 Pseudomonas putida BIRD-1 Flagellar protein FlaG protein YP_005929343.1 1639604 D 931281 CDS YP_005929344.1 386011067 12519704 1640041..1641432 1 NC_017530.1 Flagellar hook-associated 2 domain-containing protein 1641432 12519704 PPUBIRD1_1467 Pseudomonas putida BIRD-1 Flagellar hook-associated 2 domain-containing protein YP_005929344.1 1640041 D 931281 CDS YP_005929345.1 386011068 12519705 1641569..1641961 1 NC_017530.1 flagellar protein FliS; protein FliS 1641961 fliS 12519705 fliS Pseudomonas putida BIRD-1 protein FliS YP_005929345.1 1641569 D 931281 CDS YP_005929346.1 386011069 12519706 1641978..1642271 1 NC_017530.1 hypothetical protein 1642271 12519706 PPUBIRD1_1469 Pseudomonas putida BIRD-1 hypothetical protein YP_005929346.1 1641978 D 931281 CDS YP_005929347.1 386011070 12519707 1642440..1643915 1 NC_017530.1 sigma54 specific transcriptional regulator, Fis family; FleQ 1643915 fleQ 12519707 fleQ Pseudomonas putida BIRD-1 FleQ YP_005929347.1 1642440 D 931281 CDS YP_005929348.1 386011071 12519708 1644190..1644960 1 NC_017530.1 glucose-1-phosphate cytidylyltransferase 1644960 12519708 PPUBIRD1_1471 Pseudomonas putida BIRD-1 glucose-1-phosphate cytidylyltransferase YP_005929348.1 1644190 D 931281 CDS YP_005929349.1 386011072 12519709 1644942..1646018 1 NC_017530.1 CDP-glucose 4,6-dehydratase 1646018 12519709 PPUBIRD1_1472 Pseudomonas putida BIRD-1 CDP-glucose 4,6-dehydratase YP_005929349.1 1644942 D 931281 CDS YP_005929350.1 386011073 12519710 1646011..1647333 1 NC_017530.1 Lipopolysaccharide biosynthesis protein rfbH 1647333 12519710 PPUBIRD1_1473 Pseudomonas putida BIRD-1 Lipopolysaccharide biosynthesis protein rfbH YP_005929350.1 1646011 D 931281 CDS YP_005929351.1 386011074 12519711 1647333..1648025 1 NC_017530.1 HAD superfamily hydrolase 1648025 12519711 PPUBIRD1_1474 Pseudomonas putida BIRD-1 HAD superfamily hydrolase YP_005929351.1 1647333 D 931281 CDS YP_005929352.1 386011075 12519712 1648022..1649386 1 NC_017530.1 Putative sugar kinase 1649386 12519712 PPUBIRD1_1475 Pseudomonas putida BIRD-1 Putative sugar kinase YP_005929352.1 1648022 D 931281 CDS YP_005929353.1 386011076 12519713 1649383..1651281 1 NC_017530.1 bifunctional; N-acetyl neuramic acid synthetase NeuB 1651281 12519713 PPUBIRD1_1476 Pseudomonas putida BIRD-1 N-acetyl neuramic acid synthetase NeuB YP_005929353.1 1649383 D 931281 CDS YP_005929354.1 386011077 12519714 1651341..1653113 1 NC_017530.1 Thiamine pyrophosphate binding domain-containing protein 1653113 12519714 PPUBIRD1_1477 Pseudomonas putida BIRD-1 Thiamine pyrophosphate binding domain-containing protein YP_005929354.1 1651341 D 931281 CDS YP_005929355.1 386011078 12519715 1653110..1653868 1 NC_017530.1 hypothetical protein 1653868 12519715 PPUBIRD1_1478 Pseudomonas putida BIRD-1 hypothetical protein YP_005929355.1 1653110 D 931281 CDS YP_005929356.1 386011079 12519716 1653858..1654916 1 NC_017530.1 Methyltransferase FkbM 1654916 12519716 PPUBIRD1_1479 Pseudomonas putida BIRD-1 Methyltransferase FkbM YP_005929356.1 1653858 D 931281 CDS YP_005929357.1 386011080 12519717 1654993..1655982 1 NC_017530.1 hypothetical protein 1655982 12519717 PPUBIRD1_1480 Pseudomonas putida BIRD-1 hypothetical protein YP_005929357.1 1654993 D 931281 CDS YP_005929358.1 386011081 12519718 1655979..1657259 1 NC_017530.1 hypothetical protein 1657259 12519718 PPUBIRD1_1481 Pseudomonas putida BIRD-1 hypothetical protein YP_005929358.1 1655979 D 931281 CDS YP_005929359.1 386011082 12519719 1657259..1658173 1 NC_017530.1 hypothetical protein 1658173 12519719 PPUBIRD1_1482 Pseudomonas putida BIRD-1 hypothetical protein YP_005929359.1 1657259 D 931281 CDS YP_005929360.1 386011083 12519720 1658260..1659579 1 NC_017530.1 hypothetical protein 1659579 12519720 PPUBIRD1_1483 Pseudomonas putida BIRD-1 hypothetical protein YP_005929360.1 1658260 D 931281 CDS YP_005929361.1 386011084 12519721 1659740..1660732 1 NC_017530.1 NAD-dependent epimerase/dehydratase 1660732 12519721 PPUBIRD1_1484 Pseudomonas putida BIRD-1 NAD-dependent epimerase/dehydratase YP_005929361.1 1659740 D 931281 CDS YP_005929362.1 386011085 12519722 1660833..1665941 1 NC_017530.1 Glycosyl transferase family protein 1665941 12519722 PPUBIRD1_1485 Pseudomonas putida BIRD-1 Glycosyl transferase family protein YP_005929362.1 1660833 D 931281 CDS YP_005929363.1 386011086 12519723 1666364..1667683 1 NC_017530.1 ISPpu9, transposase 1667683 12519723 PPUBIRD1_1486 Pseudomonas putida BIRD-1 ISPpu9, transposase YP_005929363.1 1666364 D 931281 CDS YP_005929364.1 386011087 12519724 1667840..1669057 1 NC_017530.1 PAS/PAC sensor signal transduction histidine kinase; FleS 1669057 fleS 12519724 fleS Pseudomonas putida BIRD-1 FleS YP_005929364.1 1667840 D 931281 CDS YP_005929365.1 386011088 12519725 1669057..1670412 1 NC_017530.1 Two component, sigma54 specific, Fis family transcriptional regulator 1670412 12519725 PPUBIRD1_1488 Pseudomonas putida BIRD-1 Two component, sigma54 specific, Fis family transcriptional regulator YP_005929365.1 1669057 D 931281 CDS YP_005929366.1 386011089 12519726 1670675..1671007 1 NC_017530.1 Flagellar hook-basal body complex protein fliE; protein FliE 1671007 fliE 12519726 fliE Pseudomonas putida BIRD-1 protein FliE YP_005929366.1 1670675 D 931281 CDS YP_005929367.1 386011090 12519727 1671023..1672801 1 NC_017530.1 Flagellar M-ring protein; protein Fliprotein F 1672801 fliF 12519727 fliF Pseudomonas putida BIRD-1 protein Fliprotein F YP_005929367.1 1671023 D 931281 CDS YP_005929368.1 386011091 12519728 1672794..1673813 1 NC_017530.1 flagellar motor switch protein G; protein FliG 1673813 fliG 12519728 fliG Pseudomonas putida BIRD-1 protein FliG YP_005929368.1 1672794 D 931281 CDS YP_005929369.1 386011092 12519729 1673976..1674767 1 NC_017530.1 flagellar assembly protein H; protein FliH 1674767 fliH 12519729 fliH Pseudomonas putida BIRD-1 protein FliH YP_005929369.1 1673976 D 931281 CDS YP_005929370.1 386011093 12519730 1674757..1676112 1 NC_017530.1 Flagellum-specific ATP synthase; protein FliI 1676112 fliI 12519730 fliI Pseudomonas putida BIRD-1 protein FliI YP_005929370.1 1674757 D 931281 CDS YP_005929371.1 386011094 12519731 1676119..1676571 1 NC_017530.1 flagellar biosynthesis chaperone; FliJ protein 1676571 fliJ 12519731 fliJ Pseudomonas putida BIRD-1 FliJ protein YP_005929371.1 1676119 D 931281 CDS YP_005929372.1 386011095 12519732 1676744..1677049 1 NC_017530.1 anti-sigma-factor antagonist 1677049 12519732 PPUBIRD1_1495 Pseudomonas putida BIRD-1 anti-sigma-factor antagonist YP_005929372.1 1676744 D 931281 CDS YP_005929373.1 386011096 12519733 1677058..1678749 1 NC_017530.1 Response regulator receiver protein 1678749 12519733 PPUBIRD1_1496 Pseudomonas putida BIRD-1 Response regulator receiver protein YP_005929373.1 1677058 D 931281 CDS YP_005929374.1 386011097 12519734 1678798..1679145 1 NC_017530.1 Hpt protein 1679145 12519734 PPUBIRD1_1497 Pseudomonas putida BIRD-1 Hpt protein YP_005929374.1 1678798 D 931281 CDS YP_005929375.1 386011098 12519735 1679217..1680482 1 NC_017530.1 flagellar hook-length control protein; protein FliK 1680482 fliK 12519735 fliK Pseudomonas putida BIRD-1 protein FliK YP_005929375.1 1679217 D 931281 CDS YP_005929376.1 386011099 12519736 1680701..1681198 1 NC_017530.1 flagellar basal body-associated protein FliL; protein FliL 1681198 fliL 12519736 fliL Pseudomonas putida BIRD-1 protein FliL YP_005929376.1 1680701 D 931281 CDS YP_005929377.1 386011100 12519737 1681208..1682176 1 NC_017530.1 flagellar motor switch protein FliM; protein FliM 1682176 fliM 12519737 fliM Pseudomonas putida BIRD-1 protein FliM YP_005929377.1 1681208 D 931281 CDS YP_005929378.1 386011101 12519738 1682206..1682688 1 NC_017530.1 protein FliN 1682688 fliN 12519738 fliN Pseudomonas putida BIRD-1 protein FliN YP_005929378.1 1682206 D 931281 CDS YP_005929379.1 386011102 12519739 1682701..1683135 1 NC_017530.1 protein FliO 1683135 fliO 12519739 fliO Pseudomonas putida BIRD-1 protein FliO YP_005929379.1 1682701 D 931281 CDS YP_005929380.1 386011103 12519740 1683135..1683890 1 NC_017530.1 flagellar biosynthesis protein FliP; protein FliP 1683890 fliP 12519740 fliP Pseudomonas putida BIRD-1 protein FliP YP_005929380.1 1683135 D 931281 CDS YP_005929381.1 386011104 12519741 1683912..1684181 1 NC_017530.1 flagellar biosynthesis protein FliQ; protein FliQ 1684181 fliQ 12519741 fliQ Pseudomonas putida BIRD-1 protein FliQ YP_005929381.1 1683912 D 931281 CDS YP_005929382.1 386011105 12519742 1684189..1684965 1 NC_017530.1 flagellar biosynthesis protein FliR; protein FliR 1684965 fliR 12519742 fliR Pseudomonas putida BIRD-1 protein FliR YP_005929382.1 1684189 D 931281 CDS YP_005929383.1 386011106 12519743 1684968..1686110 1 NC_017530.1 flagellar biosynthesis protein FlhB; protein FlhB 1686110 flhB 12519743 flhB Pseudomonas putida BIRD-1 protein FlhB YP_005929383.1 1684968 D 931281 CDS YP_005929384.1 386011107 12519744 1686328..1688457 1 NC_017530.1 flagellar biosynthesis protein FlhA; protein FlhA 1688457 flhA 12519744 flhA Pseudomonas putida BIRD-1 protein FlhA YP_005929384.1 1686328 D 931281 CDS YP_005929385.1 386011108 12519745 1688469..1689776 1 NC_017530.1 Flagellar biosynthesis protein flhF; protein FlhF 1689776 flhF 12519745 flhF Pseudomonas putida BIRD-1 protein FlhF YP_005929385.1 1688469 D 931281 CDS YP_005929386.1 386011109 12519746 1689870..1690703 1 NC_017530.1 flagellar number regulator FleN; protein FleN 1690703 fleN 12519746 fleN Pseudomonas putida BIRD-1 protein FleN YP_005929386.1 1689870 D 931281 CDS YP_005929387.1 386011110 12519747 1690700..1691440 1 NC_017530.1 flagellar biosynthesis sigma factor; protein FliA 1691440 fliA 12519747 fliA Pseudomonas putida BIRD-1 protein FliA YP_005929387.1 1690700 D 931281 CDS YP_005929388.1 386011111 12519748 1691536..1691922 1 NC_017530.1 Response regulator receiver protein 1691922 12519748 PPUBIRD1_1511 Pseudomonas putida BIRD-1 Response regulator receiver protein YP_005929388.1 1691536 D 931281 CDS YP_005929389.1 386011112 12519749 1691944..1692732 1 NC_017530.1 chemotaxis phosphatase, CheZ; chemotaxis protein CheZ 1692732 cheZ 12519749 cheZ Pseudomonas putida BIRD-1 chemotaxis protein CheZ YP_005929389.1 1691944 D 931281 CDS YP_005929390.1 386011113 12519750 1692745..1694988 1 NC_017530.1 CheA signal transduction histidine kinase; chemotaxis protein CheA 1694988 cheA 12519750 cheA Pseudomonas putida BIRD-1 chemotaxis protein CheA YP_005929390.1 1692745 D 931281 CDS YP_005929391.1 386011114 12519751 1695035..1696147 1 NC_017530.1 Chemotaxis response regulator protein-glutamate methylesterase of group 1 operon; chemotaxis protein CheB 1696147 cheB 12519751 cheB Pseudomonas putida BIRD-1 chemotaxis protein CheB YP_005929391.1 1695035 D 931281 CDS YP_005929392.1 386011115 12519752 1696147..1696887 1 NC_017530.1 flagellar motor protein; MotC 1696887 motC 12519752 motC Pseudomonas putida BIRD-1 MotC YP_005929392.1 1696147 D 931281 CDS YP_005929393.1 386011116 12519753 1696891..1697748 1 NC_017530.1 Flagellar motor protein MotD 1697748 12519753 PPUBIRD1_1516 Pseudomonas putida BIRD-1 Flagellar motor protein MotD YP_005929393.1 1696891 D 931281 CDS YP_005929394.1 386011117 12519754 1697972..1698760 1 NC_017530.1 ParA family protein 1698760 12519754 PPUBIRD1_1517 Pseudomonas putida BIRD-1 ParA family protein YP_005929394.1 1697972 D 931281 CDS YP_005929395.1 386011118 12519755 1698760..1699653 1 NC_017530.1 hypothetical protein 1699653 12519755 PPUBIRD1_1518 Pseudomonas putida BIRD-1 hypothetical protein YP_005929395.1 1698760 D 931281 CDS YP_005929396.1 386011119 12519756 1699695..1700174 1 NC_017530.1 purine-binding chemotaxis protein CheW; chemotaxis protein CheW 1700174 cheW 12519756 cheW Pseudomonas putida BIRD-1 chemotaxis protein CheW YP_005929396.1 1699695 D 931281 CDS YP_005929397.1 386011120 12519757 1700176..1700571 1 NC_017530.1 hypothetical protein 1700571 12519757 PPUBIRD1_1520 Pseudomonas putida BIRD-1 hypothetical protein YP_005929397.1 1700176 D 931281 CDS YP_005929398.1 386011121 12519758 complement(1700679..1703390) 1 NC_017530.1 hypothetical protein 1703390 12519758 PPUBIRD1_1521 Pseudomonas putida BIRD-1 hypothetical protein YP_005929398.1 1700679 R 931281 CDS YP_005929399.1 386011122 12519759 complement(1703459..1703797) 1 NC_017530.1 Flagellar protein FhlB-like protein 1703797 12519759 PPUBIRD1_1522 Pseudomonas putida BIRD-1 Flagellar protein FhlB-like protein YP_005929399.1 1703459 R 931281 CDS YP_005929400.1 386011123 12519760 complement(1703794..1705350) 1 NC_017530.1 hypothetical protein 1705350 12519760 PPUBIRD1_1523 Pseudomonas putida BIRD-1 hypothetical protein YP_005929400.1 1703794 R 931281 CDS YP_005929401.1 386011124 12519761 1705578..1706210 1 NC_017530.1 Cytochrome c biogenesis ATP-binding export protein ccmA 1706210 12519761 PPUBIRD1_1524 Pseudomonas putida BIRD-1 Cytochrome c biogenesis ATP-binding export protein ccmA YP_005929401.1 1705578 D 931281 CDS YP_005929402.1 386011125 12519762 1706198..1706875 1 NC_017530.1 heme exporter protein CcmB; protein CcmB 1706875 ccmB 12519762 ccmB Pseudomonas putida BIRD-1 protein CcmB YP_005929402.1 1706198 D 931281 CDS YP_005929403.1 386011126 12519763 1706922..1707689 1 NC_017530.1 heme exporter protein CcmC; protein CcmC 1707689 ccmC 12519763 ccmC Pseudomonas putida BIRD-1 protein CcmC YP_005929403.1 1706922 D 931281 CDS YP_005929404.1 386011127 12519764 1707686..1707862 1 NC_017530.1 cytochrome c-type biogenesis protein CcmD; protein CcmD 1707862 ccmD 12519764 ccmD Pseudomonas putida BIRD-1 protein CcmD YP_005929404.1 1707686 D 931281 CDS YP_005929405.1 386011128 12519765 1707859..1708314 1 NC_017530.1 Cytochrome c-type biogenesis protein ccmE; CcmE 1708314 ccmE 12519765 ccmE Pseudomonas putida BIRD-1 CcmE YP_005929405.1 1707859 D 931281 CDS YP_005929406.1 386011129 12519766 1708311..1710299 1 NC_017530.1 Cytochrome c-type biogenesis protein ccmF 1710299 12519766 PPUBIRD1_1529 Pseudomonas putida BIRD-1 Cytochrome c-type biogenesis protein ccmF YP_005929406.1 1708311 D 931281 CDS YP_005929407.1 386011130 12519767 1710296..1710832 1 NC_017530.1 periplasmic protein thiol--disulphide oxidoreductase DsbE; protein DsbE 1710832 dsbE 12519767 dsbE Pseudomonas putida BIRD-1 protein DsbE YP_005929407.1 1710296 D 931281 CDS YP_005929408.1 386011131 12519768 1710829..1711305 1 NC_017530.1 Cytochrome C biogenesis protein 1711305 12519768 PPUBIRD1_1531 Pseudomonas putida BIRD-1 Cytochrome C biogenesis protein YP_005929408.1 1710829 D 931281 CDS YP_005929409.1 386011132 12519769 1711298..1712494 1 NC_017530.1 hypothetical protein 1712494 12519769 PPUBIRD1_1532 Pseudomonas putida BIRD-1 hypothetical protein YP_005929409.1 1711298 D 931281 CDS YP_005929410.1 386011133 12519770 1712507..1712923 1 NC_017530.1 hypothetical protein 1712923 12519770 PPUBIRD1_1533 Pseudomonas putida BIRD-1 hypothetical protein YP_005929410.1 1712507 D 931281 CDS YP_005929411.1 386011134 12519771 1713437..1713592 1 NC_017530.1 2-hydroxyacid dehydrogenase 1713592 12519771 PPUBIRD1_1535 Pseudomonas putida BIRD-1 2-hydroxyacid dehydrogenase YP_005929411.1 1713437 D 931281 CDS YP_005929412.1 386011135 12519772 1713645..1714433 1 NC_017530.1 PhzF family phenazine biosynthesis protein 1714433 12519772 PPUBIRD1_1536 Pseudomonas putida BIRD-1 PhzF family phenazine biosynthesis protein YP_005929412.1 1713645 D 931281 CDS YP_005929413.1 386011136 12519773 1714501..1714908 1 NC_017530.1 Glutathione-dependent formaldehyde-activating, GFA 1714908 12519773 PPUBIRD1_1537 Pseudomonas putida BIRD-1 Glutathione-dependent formaldehyde-activating, GFA YP_005929413.1 1714501 D 931281 CDS YP_005929414.1 386011137 12519774 1715037..1715375 1 NC_017530.1 Peptidylprolyl isomerase, FKBP-type 1715375 12519774 PPUBIRD1_1538 Pseudomonas putida BIRD-1 Peptidylprolyl isomerase, FKBP-type YP_005929414.1 1715037 D 931281 CDS YP_005929415.1 386011138 12519775 1715608..1716270 1 NC_017530.1 hypothetical protein 1716270 12519775 PPUBIRD1_1539 Pseudomonas putida BIRD-1 hypothetical protein YP_005929415.1 1715608 D 931281 CDS YP_005929416.1 386011139 12519776 1716315..1717508 1 NC_017530.1 D-amino-acid dehydrogenase 1717508 12519776 PPUBIRD1_1540 Pseudomonas putida BIRD-1 D-amino-acid dehydrogenase YP_005929416.1 1716315 D 931281 CDS YP_005929417.1 386011140 12519777 complement(1717629..1718357) 1 NC_017530.1 Hydantoin racemase, putative 1718357 12519777 PPUBIRD1_1541 Pseudomonas putida BIRD-1 Hydantoin racemase, putative YP_005929417.1 1717629 R 931281 CDS YP_005929418.1 386011141 12519778 complement(1718374..1719774) 1 NC_017530.1 NCS1 nucleoside transporter 1719774 12519778 PPUBIRD1_1542 Pseudomonas putida BIRD-1 NCS1 nucleoside transporter YP_005929418.1 1718374 R 931281 CDS YP_005929419.1 386011142 12519779 complement(1720402..1720839) 1 NC_017530.1 AsnC family transcriptional regulator 1720839 12519779 PPUBIRD1_1544 Pseudomonas putida BIRD-1 AsnC family transcriptional regulator YP_005929419.1 1720402 R 931281 CDS YP_005929420.1 386011143 12519780 1720973..1721896 1 NC_017530.1 hypothetical protein 1721896 12519780 PPUBIRD1_1545 Pseudomonas putida BIRD-1 hypothetical protein YP_005929420.1 1720973 D 931281 CDS YP_005929421.1 386011144 12519781 1721898..1722854 1 NC_017530.1 hypothetical protein 1722854 12519781 PPUBIRD1_1546 Pseudomonas putida BIRD-1 hypothetical protein YP_005929421.1 1721898 D 931281 CDS YP_005929422.1 386011145 12519782 complement(1722913..1723065) 1 NC_017530.1 mechanosensitive ion channel protein MscS 1723065 12519782 PPUBIRD1_1547 Pseudomonas putida BIRD-1 mechanosensitive ion channel protein MscS YP_005929422.1 1722913 R 931281 CDS YP_005929423.1 386011146 12519783 complement(1723044..1723445) 1 NC_017530.1 mechanosensitive ion channel protein MscS 1723445 12519783 PPUBIRD1_1548 Pseudomonas putida BIRD-1 mechanosensitive ion channel protein MscS YP_005929423.1 1723044 R 931281 CDS YP_005929424.1 386011147 12519784 complement(1723415..1723777) 1 NC_017530.1 mechanosensitive ion channel protein MscS 1723777 12519784 PPUBIRD1_1549 Pseudomonas putida BIRD-1 mechanosensitive ion channel protein MscS YP_005929424.1 1723415 R 931281 CDS YP_005929425.1 386011148 12519785 1723805..1723963 1 NC_017530.1 hypothetical protein 1723963 12519785 PPUBIRD1_1550 Pseudomonas putida BIRD-1 hypothetical protein YP_005929425.1 1723805 D 931281 CDS YP_005929426.1 386011149 12519786 1724175..1725686 1 NC_017530.1 Major facilitator transporter 1725686 12519786 PPUBIRD1_1551 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005929426.1 1724175 D 931281 CDS YP_005929427.1 386011150 12519787 complement(1726013..1727011) 1 NC_017530.1 sulfate ABC transporter substrate-binding protein 1727011 12519787 PPUBIRD1_1552 Pseudomonas putida BIRD-1 sulfate ABC transporter substrate-binding protein YP_005929427.1 1726013 R 931281 CDS YP_005929428.1 386011151 12519788 complement(1727229..1728047) 1 NC_017530.1 Cation transporter, voltage-gated ion channel cation transporter 1728047 12519788 PPUBIRD1_1553 Pseudomonas putida BIRD-1 Cation transporter, voltage-gated ion channel cation transporter YP_005929428.1 1727229 R 931281 CDS YP_005929429.1 386011152 12519789 complement(1729204..1730091) 1 NC_017530.1 Urea transporter 1730091 12519789 PPUBIRD1_1554 Pseudomonas putida BIRD-1 Urea transporter YP_005929429.1 1729204 R 931281 CDS YP_005929430.1 386011153 12519790 complement(1730205..1731620) 1 NC_017530.1 pyruvate kinase; PykF 1731620 pykF 12519790 pykF Pseudomonas putida BIRD-1 PykF YP_005929430.1 1730205 R 931281 CDS YP_005929431.1 386011154 12519791 complement(1731617..1732891) 1 NC_017530.1 hydroxypyruvate reductase 1732891 12519791 PPUBIRD1_1556 Pseudomonas putida BIRD-1 hydroxypyruvate reductase YP_005929431.1 1731617 R 931281 CDS YP_005929432.1 386011155 12519792 complement(1733129..1734022) 1 NC_017530.1 2-hydroxy-3-oxopropionate reductase; GlxR 1734022 glxR 12519792 glxR Pseudomonas putida BIRD-1 GlxR YP_005929432.1 1733129 R 931281 CDS YP_005929433.1 386011156 12519793 complement(1734175..1734957) 1 NC_017530.1 Hydroxypyruvate isomerase 1734957 12519793 PPUBIRD1_1558 Pseudomonas putida BIRD-1 Hydroxypyruvate isomerase YP_005929433.1 1734175 R 931281 CDS YP_005929434.1 386011157 12519794 complement(1735012..1736787) 1 NC_017530.1 Glyoxylate carboligase; Gcl 1736787 gcl 12519794 gcl Pseudomonas putida BIRD-1 Gcl YP_005929434.1 1735012 R 931281 CDS YP_005929435.1 386011158 12519795 1737045..1737485 1 NC_017530.1 hypothetical protein 1737485 12519795 PPUBIRD1_1560 Pseudomonas putida BIRD-1 hypothetical protein YP_005929435.1 1737045 D 931281 CDS YP_005929436.1 386011159 12519796 complement(1737586..1738197) 1 NC_017530.1 TetR family transcriptional regulator 1738197 12519796 PPUBIRD1_1561 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005929436.1 1737586 R 931281 CDS YP_005929437.1 386011160 12519797 1738330..1739244 1 NC_017530.1 hypothetical protein 1739244 12519797 PPUBIRD1_1562 Pseudomonas putida BIRD-1 hypothetical protein YP_005929437.1 1738330 D 931281 CDS YP_005929438.1 386011161 12519798 complement(1739384..1740166) 1 NC_017530.1 Nucleoside-binding outer membrane protein-like protein 1740166 12519798 PPUBIRD1_1563 Pseudomonas putida BIRD-1 Nucleoside-binding outer membrane protein-like protein YP_005929438.1 1739384 R 931281 CDS YP_005929439.1 386011162 12519799 complement(1740521..1741306) 1 NC_017530.1 hypothetical protein 1741306 12519799 PPUBIRD1_1564 Pseudomonas putida BIRD-1 hypothetical protein YP_005929439.1 1740521 R 931281 CDS YP_005929440.1 386011163 12519800 complement(1741446..1742801) 1 NC_017530.1 xanthine/uracil permease family protein 1742801 12519800 PPUBIRD1_1565 Pseudomonas putida BIRD-1 xanthine/uracil permease family protein YP_005929440.1 1741446 R 931281 CDS YP_005929441.1 386011164 12519801 complement(1742987..1744315) 1 NC_017530.1 hypothetical protein 1744315 12519801 PPUBIRD1_1566 Pseudomonas putida BIRD-1 hypothetical protein YP_005929441.1 1742987 R 931281 CDS YP_005929442.1 386011165 12519802 complement(1744360..1744863) 1 NC_017530.1 ureidoglycolate hydrolase 1744863 12519802 PPUBIRD1_1567 Pseudomonas putida BIRD-1 ureidoglycolate hydrolase YP_005929442.1 1744360 R 931281 CDS YP_005929443.1 386011166 12519803 complement(1744913..1745428) 1 NC_017530.1 Uric acid degradation bifunctional protein PucL 1745428 12519803 PPUBIRD1_1568 Pseudomonas putida BIRD-1 Uric acid degradation bifunctional protein PucL YP_005929443.1 1744913 R 931281 CDS YP_005929444.1 386011167 12519804 complement(1745428..1746354) 1 NC_017530.1 chitin deacetylase 1746354 12519804 PPUBIRD1_1569 Pseudomonas putida BIRD-1 chitin deacetylase YP_005929444.1 1745428 R 931281 CDS YP_005929445.1 386011168 12519805 1746754..1747107 1 NC_017530.1 Transthyretin family protein 1747107 12519805 PPUBIRD1_1570 Pseudomonas putida BIRD-1 Transthyretin family protein YP_005929445.1 1746754 D 931281 CDS YP_005929446.1 386011169 12519806 complement(1747636..1748985) 1 NC_017530.1 xanthine/uracil/vitamin C permease 1748985 12519806 PPUBIRD1_1571 Pseudomonas putida BIRD-1 xanthine/uracil/vitamin C permease YP_005929446.1 1747636 R 931281 CDS YP_005929447.1 386011170 12519807 1749268..1750023 1 NC_017530.1 GntR family transcriptional regulator 1750023 12519807 PPUBIRD1_1572 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005929447.1 1749268 D 931281 CDS YP_005929448.1 386011171 12519808 1750175..1750873 1 NC_017530.1 aquaporin 1750873 12519808 PPUBIRD1_1573 Pseudomonas putida BIRD-1 aquaporin YP_005929448.1 1750175 D 931281 CDS YP_005929449.1 386011172 12519809 complement(1750870..1752174) 1 NC_017530.1 Guanine deaminase 1752174 12519809 PPUBIRD1_1574 Pseudomonas putida BIRD-1 Guanine deaminase YP_005929449.1 1750870 R 931281 CDS YP_005929450.1 386011173 12519810 complement(1752185..1753030) 1 NC_017530.1 Xanthine dehydrogenase accessory factor XdhC, putative 1753030 12519810 PPUBIRD1_1575 Pseudomonas putida BIRD-1 Xanthine dehydrogenase accessory factor XdhC, putative YP_005929450.1 1752185 R 931281 CDS YP_005929451.1 386011174 12519811 complement(1753150..1755513) 1 NC_017530.1 xanthine dehydrogenase, XdhB subunit; bifunctional; XdhB 1755513 xdhB 12519811 xdhB Pseudomonas putida BIRD-1 XdhB YP_005929451.1 1753150 R 931281 CDS YP_005929452.1 386011175 12519812 complement(1755542..1756996) 1 NC_017530.1 xanthine dehydrogenase, XdhA subunit; XdhA 1756996 xdhA 12519812 xdhA Pseudomonas putida BIRD-1 XdhA YP_005929452.1 1755542 R 931281 CDS YP_005929453.1 386011176 12519813 1757265..1757924 1 NC_017530.1 GntR family transcriptional regulator 1757924 12519813 PPUBIRD1_1578 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005929453.1 1757265 D 931281 CDS YP_005929454.1 386011177 12519814 1757928..1761416 1 NC_017530.1 Chromosome segregation protein SMC 1761416 12519814 PPUBIRD1_1579 Pseudomonas putida BIRD-1 Chromosome segregation protein SMC YP_005929454.1 1757928 D 931281 CDS YP_005929455.1 386011178 12519815 1761622..1762515 1 NC_017530.1 Cell division protein zipA homolog; ZipA 1762515 zipA 12519815 zipA Pseudomonas putida BIRD-1 ZipA YP_005929455.1 1761622 D 931281 CDS YP_005929456.1 386011179 12519816 1762752..1765082 1 NC_017530.1 DNA ligase; LigA protein 1765082 ligA 12519816 ligA Pseudomonas putida BIRD-1 LigA protein YP_005929456.1 1762752 D 931281 CDS YP_005929457.1 386011180 12519817 1765562..1765954 1 NC_017530.1 hypothetical protein 1765954 12519817 PPUBIRD1_1582 Pseudomonas putida BIRD-1 hypothetical protein YP_005929457.1 1765562 D 931281 CDS YP_005929458.1 386011181 12519818 1766049..1767239 1 NC_017530.1 Major facilitator family transporter 1767239 12519818 PPUBIRD1_1583 Pseudomonas putida BIRD-1 Major facilitator family transporter YP_005929458.1 1766049 D 931281 CDS YP_005929459.1 386011182 12519819 1767728..1768201 1 NC_017530.1 hypothetical protein 1768201 12519819 PPUBIRD1_1584 Pseudomonas putida BIRD-1 hypothetical protein YP_005929459.1 1767728 D 931281 CDS YP_005929460.1 386011183 12519820 1770188..1770373 1 NC_017530.1 hypothetical protein 1770373 12519820 PPUBIRD1_1585 Pseudomonas putida BIRD-1 hypothetical protein YP_005929460.1 1770188 D 931281 CDS YP_005929461.1 386011184 12519821 complement(1770517..1771323) 1 NC_017530.1 Extracellular solute-binding protein 1771323 12519821 PPUBIRD1_1586 Pseudomonas putida BIRD-1 Extracellular solute-binding protein YP_005929461.1 1770517 R 931281 CDS YP_005929462.1 386011185 12519822 1771445..1773514 1 NC_017530.1 DNA polymerase III subunits gamma and tau; protein DnaX 1773514 dnaX 12519822 dnaX Pseudomonas putida BIRD-1 protein DnaX YP_005929462.1 1771445 D 931281 CDS YP_005929463.1 386011186 12519823 1773578..1773913 1 NC_017530.1 hypothetical protein 1773913 12519823 PPUBIRD1_1588 Pseudomonas putida BIRD-1 hypothetical protein YP_005929463.1 1773578 D 931281 CDS YP_005929464.1 386011187 12519824 1774272..1774874 1 NC_017530.1 Recombination protein recR; RecR protein 1774874 recR 12519824 recR Pseudomonas putida BIRD-1 RecR protein YP_005929464.1 1774272 D 931281 CDS YP_005929465.1 386011188 12519825 complement(1774989..1775537) 1 NC_017530.1 Adenine phosphoribosyltransferase; protein Apt 1775537 apt 12519825 apt Pseudomonas putida BIRD-1 protein Apt YP_005929465.1 1774989 R 931281 CDS YP_005929466.1 386011189 12519826 complement(1775593..1776327) 1 NC_017530.1 transcriptional regulator Anr; Anr 1776327 anr 12519826 anr Pseudomonas putida BIRD-1 Anr YP_005929466.1 1775593 R 931281 CDS YP_005929467.1 386011190 12519827 complement(1776514..1777896) 1 NC_017530.1 Oxygen-independent coproporphyrinogen-III oxidase; HemN 1777896 hemN 12519827 hemN Pseudomonas putida BIRD-1 HemN YP_005929467.1 1776514 R 931281 CDS YP_005929468.1 386011191 12519828 complement(1778002..1778685) 1 NC_017530.1 hypothetical protein 1778685 12519828 PPUBIRD1_1593 Pseudomonas putida BIRD-1 hypothetical protein YP_005929468.1 1778002 R 931281 CDS YP_005929469.1 386011192 12519829 complement(1778678..1778893) 1 NC_017530.1 cytochrome oxidase maturation protein, cbb3-type; CcoS 1778893 ccoS 12519829 ccoS Pseudomonas putida BIRD-1 CcoS YP_005929469.1 1778678 R 931281 CDS YP_005929470.1 386011193 12519830 complement(1778872..1781346) 1 NC_017530.1 Heavy metal translocating P-type ATPase 1781346 12519830 PPUBIRD1_1595 Pseudomonas putida BIRD-1 Heavy metal translocating P-type ATPase YP_005929470.1 1778872 R 931281 CDS YP_005929471.1 386011194 12519831 complement(1781483..1782013) 1 NC_017530.1 hypothetical protein 1782013 12519831 PPUBIRD1_1596 Pseudomonas putida BIRD-1 hypothetical protein YP_005929471.1 1781483 R 931281 CDS YP_005929472.1 386011195 12519832 complement(1782029..1783447) 1 NC_017530.1 Iron-sulfur cluster-binding protein 1783447 12519832 PPUBIRD1_1597 Pseudomonas putida BIRD-1 Iron-sulfur cluster-binding protein YP_005929472.1 1782029 R 931281 CDS YP_005929473.1 386011196 12519833 complement(1783741..1784718) 1 NC_017530.1 cytochrome c oxidase, cbb3-type, subunit III; protein CcoP 1784718 ccoP 12519833 ccoP Pseudomonas putida BIRD-1 protein CcoP YP_005929473.1 1783741 R 931281 CDS YP_005929474.1 386011197 12519834 complement(1784715..1784915) 1 NC_017530.1 Cbb3-type cytochrome oxidase component; CcoQ 1784915 ccoQ 12519834 ccoQ Pseudomonas putida BIRD-1 CcoQ YP_005929474.1 1784715 R 931281 CDS YP_005929475.1 386011198 12519835 complement(1784912..1785520) 1 NC_017530.1 cytochrome c oxidase, cbb3-type, subunit II; CcoO 1785520 ccoO 12519835 ccoO Pseudomonas putida BIRD-1 CcoO YP_005929475.1 1784912 R 931281 CDS YP_005929476.1 386011199 12519836 complement(1785520..1786719) 1 NC_017530.1 cytochrome c oxidase, cbb3-type, subunit I; CcoN 1786719 ccoN 12519836 ccoN Pseudomonas putida BIRD-1 CcoN YP_005929476.1 1785520 R 931281 CDS YP_005929477.1 386011200 12519837 complement(1786692..1786961) 1 NC_017530.1 Cytochrome c oxidase, cbb3-type, subunit I 1786961 12519837 PPUBIRD1_1602 Pseudomonas putida BIRD-1 Cytochrome c oxidase, cbb3-type, subunit I YP_005929477.1 1786692 R 931281 CDS YP_005929478.1 386011201 12519838 complement(1787527..1788468) 1 NC_017530.1 cytochrome c oxidase, cbb3-type, subunit III; CcoP_2 1788468 ccoP_2 12519838 ccoP_2 Pseudomonas putida BIRD-1 CcoP_2 YP_005929478.1 1787527 R 931281 CDS YP_005929479.1 386011202 12519839 complement(1788465..1788659) 1 NC_017530.1 cytochrome c oxidase, cbb3-type, CcoQ subunit; CcoQ_2 1788659 ccoQ_2 12519839 ccoQ_2 Pseudomonas putida BIRD-1 CcoQ_2 YP_005929479.1 1788465 R 931281 CDS YP_005929480.1 386011203 12519840 complement(1788665..1789273) 1 NC_017530.1 cytochrome c oxidase, cbb3-type, subunit II; CcoO_2 1789273 ccoO_2 12519840 ccoO_2 Pseudomonas putida BIRD-1 CcoO_2 YP_005929480.1 1788665 R 931281 CDS YP_005929481.1 386011204 12519841 complement(1789287..1790711) 1 NC_017530.1 cytochrome c oxidase, cbb3-type, subunit I; CcoN_2 1790711 ccoN_2 12519841 ccoN_2 Pseudomonas putida BIRD-1 CcoN_2 YP_005929481.1 1789287 R 931281 CDS YP_005929482.1 386011205 12519842 1790909..1791454 1 NC_017530.1 hypothetical protein 1791454 12519842 PPUBIRD1_1607 Pseudomonas putida BIRD-1 hypothetical protein YP_005929482.1 1790909 D 931281 CDS YP_005929483.1 386011206 12519843 complement(1791569..1791853) 1 NC_017530.1 hypothetical protein 1791853 12519843 PPUBIRD1_1608 Pseudomonas putida BIRD-1 hypothetical protein YP_005929483.1 1791569 R 931281 CDS YP_005929484.1 386011207 12519844 complement(1791928..1792479) 1 NC_017530.1 Exonuclease 1792479 12519844 PPUBIRD1_1609 Pseudomonas putida BIRD-1 Exonuclease YP_005929484.1 1791928 R 931281 CDS YP_005929485.1 386011208 12519845 1792651..1793451 1 NC_017530.1 Periplasmic binding protein 1793451 12519845 PPUBIRD1_1610 Pseudomonas putida BIRD-1 Periplasmic binding protein YP_005929485.1 1792651 D 931281 CDS YP_005929486.1 386011209 12519846 1793515..1794528 1 NC_017530.1 Siderophore biosynthesis protein 1794528 12519846 PPUBIRD1_1611 Pseudomonas putida BIRD-1 Siderophore biosynthesis protein YP_005929486.1 1793515 D 931281 CDS YP_005929487.1 386011210 12519847 complement(1794756..1795286) 1 NC_017530.1 extracytoplasmic-function sigma-70 factor PvdS; PfrI 1795286 pfrI 12519847 pfrI Pseudomonas putida BIRD-1 PfrI YP_005929487.1 1794756 R 931281 CDS YP_005929488.1 386011211 12519848 1795592..1808545 1 NC_017530.1 Antibiotic peptide synthase 1808545 12519848 PPUBIRD1_1613 Pseudomonas putida BIRD-1 Antibiotic peptide synthase YP_005929488.1 1795592 D 931281 CDS YP_005929489.1 386011212 12519849 complement(1808588..1808749) 1 NC_017530.1 multidrug ABC transporter ATPase component-like protein 1808749 12519849 PPUBIRD1_1614 Pseudomonas putida BIRD-1 multidrug ABC transporter ATPase component-like protein YP_005929489.1 1808588 R 931281 CDS YP_005929490.1 386011213 12519850 complement(1809289..1809612) 1 NC_017530.1 hypothetical protein 1809612 12519850 PPUBIRD1_1615 Pseudomonas putida BIRD-1 hypothetical protein YP_005929490.1 1809289 R 931281 CDS YP_005929491.1 386011214 12519851 complement(1810852..1811610) 1 NC_017530.1 disulfide isomerase/thiol-disulfide oxidase; DsbG 1811610 dsbG 12519851 dsbG Pseudomonas putida BIRD-1 DsbG YP_005929491.1 1810852 R 931281 CDS YP_005929492.1 386011215 12519852 complement(1811612..1812448) 1 NC_017530.1 Redoxin domain-containing protein 1812448 12519852 PPUBIRD1_1617 Pseudomonas putida BIRD-1 Redoxin domain-containing protein YP_005929492.1 1811612 R 931281 CDS YP_005929493.1 386011216 12519853 complement(1812448..1814163) 1 NC_017530.1 protein-disulfide reductase; protein DsbD 1814163 dsbD 12519853 dsbD Pseudomonas putida BIRD-1 protein DsbD YP_005929493.1 1812448 R 931281 CDS YP_005929494.1 386011217 12519854 1814565..1817396 1 NC_017530.1 Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding protein 1817396 12519854 PPUBIRD1_1619 Pseudomonas putida BIRD-1 Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding protein YP_005929494.1 1814565 D 931281 CDS YP_005929495.1 386011218 12519855 1817389..1817925 1 NC_017530.1 (2Fe-2S)-binding domain-containing protein 1817925 12519855 PPUBIRD1_1620 Pseudomonas putida BIRD-1 (2Fe-2S)-binding domain-containing protein YP_005929495.1 1817389 D 931281 CDS YP_005929496.1 386011219 12519856 1817928..1819139 1 NC_017530.1 Gluconate 2-dehydrogenase acceptor subunit 1819139 12519856 PPUBIRD1_1621 Pseudomonas putida BIRD-1 Gluconate 2-dehydrogenase acceptor subunit YP_005929496.1 1817928 D 931281 CDS YP_005929497.1 386011220 12519857 1819143..1820114 1 NC_017530.1 Xanthine dehydrogenase accessory factor, putative 1820114 12519857 PPUBIRD1_1622 Pseudomonas putida BIRD-1 Xanthine dehydrogenase accessory factor, putative YP_005929497.1 1819143 D 931281 CDS YP_005929498.1 386011221 12519858 1820111..1820674 1 NC_017530.1 hypothetical protein 1820674 12519858 PPUBIRD1_1623 Pseudomonas putida BIRD-1 hypothetical protein YP_005929498.1 1820111 D 931281 CDS YP_005929499.1 386011222 12519859 1820855..1821538 1 NC_017530.1 Winged helix family two component transcriptional regulator 1821538 12519859 PPUBIRD1_1624 Pseudomonas putida BIRD-1 Winged helix family two component transcriptional regulator YP_005929499.1 1820855 D 931281 CDS YP_005929500.1 386011223 12519860 1821535..1822857 1 NC_017530.1 Integral membrane sensor signal transduction histidine kinase 1822857 12519860 PPUBIRD1_1625 Pseudomonas putida BIRD-1 Integral membrane sensor signal transduction histidine kinase YP_005929500.1 1821535 D 931281 CDS YP_005929501.1 386011224 12519861 1823123..1824523 1 NC_017530.1 Diaminobutyrate--2-oxoglutarate aminotransferase 1824523 12519861 PPUBIRD1_1626 Pseudomonas putida BIRD-1 Diaminobutyrate--2-oxoglutarate aminotransferase YP_005929501.1 1823123 D 931281 CDS YP_005929502.1 386011225 12519862 1824629..1825612 1 NC_017530.1 SyrP protein, putative 1825612 12519862 PPUBIRD1_1627 Pseudomonas putida BIRD-1 SyrP protein, putative YP_005929502.1 1824629 D 931281 CDS YP_005929503.1 386011226 12519863 1825768..1832292 1 NC_017530.1 tyrocidine synthase 3 1832292 12519863 PPUBIRD1_1628 Pseudomonas putida BIRD-1 tyrocidine synthase 3 YP_005929503.1 1825768 D 931281 CDS YP_005929504.1 386011227 12519864 1832294..1840180 1 NC_017530.1 Linear gramicidin synthase subunit B 1840180 12519864 PPUBIRD1_1629 Pseudomonas putida BIRD-1 Linear gramicidin synthase subunit B YP_005929504.1 1832294 D 931281 CDS YP_005929505.1 386011228 12519865 1840341..1850750 1 NC_017530.1 Gramicidin S synthase 2; PpsD 1850750 ppsD 12519865 ppsD Pseudomonas putida BIRD-1 PpsD YP_005929505.1 1840341 D 931281 CDS YP_005929506.1 386011229 12519866 1850796..1851752 1 NC_017530.1 Lipase/esterase family protein 1851752 12519866 PPUBIRD1_1631 Pseudomonas putida BIRD-1 Lipase/esterase family protein YP_005929506.1 1850796 D 931281 CDS YP_005929507.1 386011230 12519867 complement(1851821..1854259) 1 NC_017530.1 outer membrane ferripyoverdine receptor; FpvA 1854259 fpvA 12519867 fpvA Pseudomonas putida BIRD-1 FpvA YP_005929507.1 1851821 R 931281 CDS YP_005929508.1 386011231 12519868 complement(1854346..1856004) 1 NC_017530.1 cyclic peptide transporter; protein PvdE 1856004 pvdE 12519868 pvdE Pseudomonas putida BIRD-1 protein PvdE YP_005929508.1 1854346 R 931281 CDS YP_005929509.1 386011232 12519869 complement(1856039..1856944) 1 NC_017530.1 hypothetical protein 1856944 12519869 PPUBIRD1_1635 Pseudomonas putida BIRD-1 hypothetical protein YP_005929509.1 1856039 R 931281 CDS YP_005929510.1 386011233 12519870 complement(1856979..1858265) 1 NC_017530.1 aminotransferase, class V 1858265 12519870 PPUBIRD1_1636 Pseudomonas putida BIRD-1 aminotransferase, class V YP_005929510.1 1856979 R 931281 CDS YP_005929511.1 386011234 12519871 complement(1858280..1859623) 1 NC_017530.1 Dipeptidase, putative 1859623 12519871 PPUBIRD1_1637 Pseudomonas putida BIRD-1 Dipeptidase, putative YP_005929511.1 1858280 R 931281 CDS YP_005929512.1 386011235 12519872 1859824..1861446 1 NC_017530.1 hypothetical protein 1861446 12519872 PPUBIRD1_1638 Pseudomonas putida BIRD-1 hypothetical protein YP_005929512.1 1859824 D 931281 CDS YP_005929513.1 386011236 12519873 complement(1861468..1862802) 1 NC_017530.1 RND efflux transporter 1862802 12519873 PPUBIRD1_1639 Pseudomonas putida BIRD-1 RND efflux transporter YP_005929513.1 1861468 R 931281 CDS YP_005929514.1 386011237 12519874 complement(1862884..1864848) 1 NC_017530.1 Macrolide export ATP-binding/permease protein macB 1864848 12519874 PPUBIRD1_1640 Pseudomonas putida BIRD-1 Macrolide export ATP-binding/permease protein macB YP_005929514.1 1862884 R 931281 CDS YP_005929515.1 386011238 12519875 complement(1864849..1866027) 1 NC_017530.1 Efflux transporter, RND family, MFP subunit 1866027 12519875 PPUBIRD1_1641 Pseudomonas putida BIRD-1 Efflux transporter, RND family, MFP subunit YP_005929515.1 1864849 R 931281 CDS YP_005929516.1 386011239 12519876 1866240..1866716 1 NC_017530.1 RNA polymerase sigma factor 1866716 12519876 PPUBIRD1_1642 Pseudomonas putida BIRD-1 RNA polymerase sigma factor YP_005929516.1 1866240 D 931281 CDS YP_005929517.1 386011240 12519877 1866885..1867364 1 NC_017530.1 hypothetical protein 1867364 12519877 PPUBIRD1_1643 Pseudomonas putida BIRD-1 hypothetical protein YP_005929517.1 1866885 D 931281 CDS YP_005929518.1 386011241 12519878 1867437..1868762 1 NC_017530.1 Major facilitator transporter 1868762 12519878 PPUBIRD1_1644 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005929518.1 1867437 D 931281 CDS YP_005929519.1 386011242 12519879 1868869..1869153 1 NC_017530.1 hypothetical protein 1869153 12519879 PPUBIRD1_1645 Pseudomonas putida BIRD-1 hypothetical protein YP_005929519.1 1868869 D 931281 CDS YP_005929520.1 386011243 12519880 1869207..1869557 1 NC_017530.1 Cro/CI family transcriptional regulator 1869557 12519880 PPUBIRD1_1646 Pseudomonas putida BIRD-1 Cro/CI family transcriptional regulator YP_005929520.1 1869207 D 931281 CDS YP_005929521.1 386011244 12519881 complement(1869633..1871297) 1 NC_017530.1 Electron transfer flavoprotein-ubiquinone oxidoreductase 1871297 12519881 PPUBIRD1_1647 Pseudomonas putida BIRD-1 Electron transfer flavoprotein-ubiquinone oxidoreductase YP_005929521.1 1869633 R 931281 CDS YP_005929522.1 386011245 12519882 1871851..1872600 1 NC_017530.1 Electron transfer flavoprotein subunit beta 1872600 12519882 PPUBIRD1_1649 Pseudomonas putida BIRD-1 Electron transfer flavoprotein subunit beta YP_005929522.1 1871851 D 931281 CDS YP_005929523.1 386011246 12519883 1872601..1873530 1 NC_017530.1 electron transfer flavoprotein subunit alpha 1873530 12519883 PPUBIRD1_1650 Pseudomonas putida BIRD-1 electron transfer flavoprotein subunit alpha YP_005929523.1 1872601 D 931281 CDS YP_005929524.1 386011247 12519884 1873606..1874427 1 NC_017530.1 hypothetical protein 1874427 12519884 PPUBIRD1_1651 Pseudomonas putida BIRD-1 hypothetical protein YP_005929524.1 1873606 D 931281 CDS YP_005929525.1 386011248 12519885 1874437..1874790 1 NC_017530.1 hypothetical protein 1874790 12519885 PPUBIRD1_1652 Pseudomonas putida BIRD-1 hypothetical protein YP_005929525.1 1874437 D 931281 CDS YP_005929526.1 386011249 12519886 1874787..1875599 1 NC_017530.1 OmpA/MotB domain-containing protein 1875599 12519886 PPUBIRD1_1653 Pseudomonas putida BIRD-1 OmpA/MotB domain-containing protein YP_005929526.1 1874787 D 931281 CDS YP_005929527.1 386011250 12519887 1875771..1877213 1 NC_017530.1 GntR family transcriptional regulator 1877213 12519887 PPUBIRD1_1654 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005929527.1 1875771 D 931281 CDS YP_005929528.1 386011251 12519888 1877278..1877712 1 NC_017530.1 hypothetical protein 1877712 12519888 PPUBIRD1_1655 Pseudomonas putida BIRD-1 hypothetical protein YP_005929528.1 1877278 D 931281 CDS YP_005929529.1 386011252 12519889 1877908..1878096 1 NC_017530.1 hypothetical protein 1878096 12519889 PPUBIRD1_1656 Pseudomonas putida BIRD-1 hypothetical protein YP_005929529.1 1877908 D 931281 CDS YP_005929530.1 386011253 12519890 1878127..1878735 1 NC_017530.1 Lipid-binding START domain-containing protein 1878735 12519890 PPUBIRD1_1657 Pseudomonas putida BIRD-1 Lipid-binding START domain-containing protein YP_005929530.1 1878127 D 931281 CDS YP_005929531.1 386011254 12519891 complement(1878911..1880200) 1 NC_017530.1 Citrate synthase; GltA 1880200 gltA 12519891 gltA Pseudomonas putida BIRD-1 GltA YP_005929531.1 1878911 R 931281 CDS YP_005929532.1 386011255 12519892 1880553..1880939 1 NC_017530.1 succinate dehydrogenase, cytochrome b556 subunit; SdhC 1880939 sdhC 12519892 sdhC Pseudomonas putida BIRD-1 SdhC YP_005929532.1 1880553 D 931281 CDS YP_005929533.1 386011256 12519893 1880933..1881301 1 NC_017530.1 succinate dehydrogenase, hydrophobic membrane anchor protein; SdhD 1881301 sdhD 12519893 sdhD Pseudomonas putida BIRD-1 SdhD YP_005929533.1 1880933 D 931281 CDS YP_005929534.1 386011257 12519894 1881305..1883077 1 NC_017530.1 Succinate dehydrogenase flavoprotein subunit; protein SdhA 1883077 sdhA 12519894 sdhA Pseudomonas putida BIRD-1 protein SdhA YP_005929534.1 1881305 D 931281 CDS YP_005929535.1 386011258 12519895 1883089..1883793 1 NC_017530.1 succinate dehydrogenase iron-sulfur subunit; protein SdhB 1883793 sdhB 12519895 sdhB Pseudomonas putida BIRD-1 protein SdhB YP_005929535.1 1883089 D 931281 CDS YP_005929536.1 386011259 12519896 1884040..1886871 1 NC_017530.1 2-oxoglutarate dehydrogenase E1 component; SucA 1886871 sucA 12519896 sucA Pseudomonas putida BIRD-1 SucA YP_005929536.1 1884040 D 931281 CDS YP_005929537.1 386011260 12519897 1886914..1888137 1 NC_017530.1 Dihydrolipoamide succinyltransferase 1888137 12519897 PPUBIRD1_1664 Pseudomonas putida BIRD-1 Dihydrolipoamide succinyltransferase YP_005929537.1 1886914 D 931281 CDS YP_005929538.1 386011261 12519898 1888231..1889667 1 NC_017530.1 Dihydrolipoamide dehydrogenase; LpdG 1889667 lpdG 12519898 lpdG Pseudomonas putida BIRD-1 LpdG YP_005929538.1 1888231 D 931281 CDS YP_005929539.1 386011262 12519899 1889839..1891005 1 NC_017530.1 Succinyl-CoA ligase [ADP-forming] subunit beta; SucC protein 1891005 sucC 12519899 sucC Pseudomonas putida BIRD-1 SucC protein YP_005929539.1 1889839 D 931281 CDS YP_005929540.1 386011263 12519900 1891005..1891889 1 NC_017530.1 succinyl-CoA synthetase subunit alpha; protein SucD 1891889 sucD 12519900 sucD Pseudomonas putida BIRD-1 protein SucD YP_005929540.1 1891005 D 931281 CDS YP_005929541.1 386011264 12519901 1892293..1893606 1 NC_017530.1 branched chain amino acid ABC transporter carrier protein; BraZ 1893606 braZ 12519901 braZ Pseudomonas putida BIRD-1 BraZ YP_005929541.1 1892293 D 931281 CDS YP_005929542.1 386011265 12519902 1893842..1894591 1 NC_017530.1 hypothetical protein 1894591 12519902 PPUBIRD1_1669 Pseudomonas putida BIRD-1 hypothetical protein YP_005929542.1 1893842 D 931281 CDS YP_005929543.1 386011266 12519903 1895084..1895560 1 NC_017530.1 Thioesterase superfamily protein 1895560 12519903 PPUBIRD1_1671 Pseudomonas putida BIRD-1 Thioesterase superfamily protein YP_005929543.1 1895084 D 931281 CDS YP_005929544.1 386011267 12519904 1895557..1896039 1 NC_017530.1 Thioesterase superfamily protein 1896039 12519904 PPUBIRD1_1672 Pseudomonas putida BIRD-1 Thioesterase superfamily protein YP_005929544.1 1895557 D 931281 CDS YP_005929545.1 386011268 12519905 1896109..1898013 1 NC_017530.1 Chaperone protein htpG; protein HtpG 1898013 htpG 12519905 htpG Pseudomonas putida BIRD-1 protein HtpG YP_005929545.1 1896109 D 931281 CDS YP_005929546.1 386011269 12519906 1898077..1898802 1 NC_017530.1 Dienelactone hydrolase 1898802 12519906 PPUBIRD1_1674 Pseudomonas putida BIRD-1 Dienelactone hydrolase YP_005929546.1 1898077 D 931281 CDS YP_005929547.1 386011270 12519907 complement(1898936..1899799) 1 NC_017530.1 Pirin domain-containing protein 1899799 12519907 PPUBIRD1_1675 Pseudomonas putida BIRD-1 Pirin domain-containing protein YP_005929547.1 1898936 R 931281 CDS YP_005929548.1 386011271 12519908 1899917..1900924 1 NC_017530.1 amidohydrolase 1900924 12519908 PPUBIRD1_1676 Pseudomonas putida BIRD-1 amidohydrolase YP_005929548.1 1899917 D 931281 CDS YP_005929549.1 386011272 12519909 complement(1901082..1902302) 1 NC_017530.1 3-oxoacyl-ACP synthase 1902302 12519909 PPUBIRD1_1677 Pseudomonas putida BIRD-1 3-oxoacyl-ACP synthase YP_005929549.1 1901082 R 931281 CDS YP_005929550.1 386011273 12519910 complement(1902314..1902829) 1 NC_017530.1 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase; FabA 1902829 fabA 12519910 fabA Pseudomonas putida BIRD-1 FabA YP_005929550.1 1902314 R 931281 CDS YP_005929551.1 386011274 12519911 complement(1903037..1904968) 1 NC_017530.1 Integral membrane sensor hybrid histidine kinase 1904968 12519911 PPUBIRD1_1679 Pseudomonas putida BIRD-1 Integral membrane sensor hybrid histidine kinase YP_005929551.1 1903037 R 931281 CDS YP_005929552.1 386011275 12519912 complement(1904965..1905855) 1 NC_017530.1 hypothetical protein 1905855 12519912 PPUBIRD1_1680 Pseudomonas putida BIRD-1 hypothetical protein YP_005929552.1 1904965 R 931281 CDS YP_005929553.1 386011276 12519913 complement(1905855..1907969) 1 NC_017530.1 TonB-dependent receptor, plug 1907969 12519913 PPUBIRD1_1681 Pseudomonas putida BIRD-1 TonB-dependent receptor, plug YP_005929553.1 1905855 R 931281 CDS YP_005929554.1 386011277 12519914 1908197..1909222 1 NC_017530.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+]; protein GpsA 1909222 gpsA 12519914 gpsA Pseudomonas putida BIRD-1 protein GpsA YP_005929554.1 1908197 D 931281 CDS YP_005929555.1 386011278 12519915 1909259..1909606 1 NC_017530.1 hypothetical protein 1909606 12519915 PPUBIRD1_1683 Pseudomonas putida BIRD-1 hypothetical protein YP_005929555.1 1909259 D 931281 CDS YP_005929556.1 386011279 12519916 1909603..1910061 1 NC_017530.1 phosphohistidine phosphatase SixA 1910061 12519916 PPUBIRD1_1684 Pseudomonas putida BIRD-1 phosphohistidine phosphatase SixA YP_005929556.1 1909603 D 931281 CDS YP_005929557.1 386011280 12519917 1910224..1910598 1 NC_017530.1 hypothetical protein 1910598 12519917 PPUBIRD1_1685 Pseudomonas putida BIRD-1 hypothetical protein YP_005929557.1 1910224 D 931281 CDS YP_005929558.1 386011281 12519918 1910625..1911479 1 NC_017530.1 hypothetical protein 1911479 12519918 PPUBIRD1_1686 Pseudomonas putida BIRD-1 hypothetical protein YP_005929558.1 1910625 D 931281 CDS YP_005929559.1 386011282 12519919 1911476..1912330 1 NC_017530.1 Alpha/beta fold family hydrolase 1912330 12519919 PPUBIRD1_1687 Pseudomonas putida BIRD-1 Alpha/beta fold family hydrolase YP_005929559.1 1911476 D 931281 CDS YP_005929560.1 386011283 12519920 1912440..1913234 1 NC_017530.1 hypothetical protein 1913234 12519920 PPUBIRD1_1688 Pseudomonas putida BIRD-1 hypothetical protein YP_005929560.1 1912440 D 931281 CDS YP_005929561.1 386011284 12519921 1913247..1914299 1 NC_017530.1 hypothetical protein 1914299 12519921 PPUBIRD1_1689 Pseudomonas putida BIRD-1 hypothetical protein YP_005929561.1 1913247 D 931281 CDS YP_005929562.1 386011285 12519922 1914616..1916310 1 NC_017530.1 Potassium-transporting ATPase A chain; KdpA 1916310 kdpA 12519922 kdpA Pseudomonas putida BIRD-1 KdpA YP_005929562.1 1914616 D 931281 CDS YP_005929563.1 386011286 12519923 1916320..1916520 1 NC_017530.1 potassium-transporting ATPase subunit B 1916520 12519923 PPUBIRD1_1691 Pseudomonas putida BIRD-1 potassium-transporting ATPase subunit B YP_005929563.1 1916320 D 931281 CDS YP_005929564.1 386011287 12519924 1916517..1918373 1 NC_017530.1 Potassium-transporting ATPase subunit B 1918373 12519924 PPUBIRD1_1692 Pseudomonas putida BIRD-1 Potassium-transporting ATPase subunit B YP_005929564.1 1916517 D 931281 CDS YP_005929565.1 386011288 12519925 1918384..1918935 1 NC_017530.1 Potassium-transporting ATPase C chain; KdpC 1918935 kdpC 12519925 kdpC Pseudomonas putida BIRD-1 KdpC YP_005929565.1 1918384 D 931281 CDS YP_005929566.1 386011289 12519926 1919079..1921733 1 NC_017530.1 osmosensitive K+ channel signal transduction histidine kinase; KdpD 1921733 kdpD 12519926 kdpD Pseudomonas putida BIRD-1 KdpD YP_005929566.1 1919079 D 931281 CDS YP_005929567.1 386011290 12519927 1921730..1922425 1 NC_017530.1 Two component transcriptional regulator 1922425 12519927 PPUBIRD1_1695 Pseudomonas putida BIRD-1 Two component transcriptional regulator YP_005929567.1 1921730 D 931281 CDS YP_005929568.1 386011291 12519928 complement(1922483..1923388) 1 NC_017530.1 LysR family transcriptional regulator 1923388 12519928 PPUBIRD1_1696 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005929568.1 1922483 R 931281 CDS YP_005929569.1 386011292 12519929 complement(1923460..1926390) 1 NC_017530.1 hypothetical protein 1926390 12519929 PPUBIRD1_1697 Pseudomonas putida BIRD-1 hypothetical protein YP_005929569.1 1923460 R 931281 CDS YP_005929570.1 386011293 12519930 1926582..1928771 1 NC_017530.1 TonB-dependent siderophore receptor 1928771 12519930 PPUBIRD1_1698 Pseudomonas putida BIRD-1 TonB-dependent siderophore receptor YP_005929570.1 1926582 D 931281 CDS YP_005929571.1 386011294 12519931 complement(1928895..1930502) 1 NC_017530.1 ABC transporter 1930502 12519931 PPUBIRD1_1699 Pseudomonas putida BIRD-1 ABC transporter YP_005929571.1 1928895 R 931281 CDS YP_005929572.1 386011295 12519932 complement(1930504..1931523) 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 1931523 12519932 PPUBIRD1_1700 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005929572.1 1930504 R 931281 CDS YP_005929573.1 386011296 12519933 complement(1931525..1932598) 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 1932598 12519933 PPUBIRD1_1701 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005929573.1 1931525 R 931281 CDS YP_005929574.1 386011297 12519934 complement(1932600..1934435) 1 NC_017530.1 Peptide ABC transporter, periplasmic peptide-binding protein 1934435 12519934 PPUBIRD1_1702 Pseudomonas putida BIRD-1 Peptide ABC transporter, periplasmic peptide-binding protein YP_005929574.1 1932600 R 931281 CDS YP_005929575.1 386011298 12519935 complement(1934432..1936204) 1 NC_017530.1 Peptide ABC transporter, periplasmic peptide-binding protein 1936204 12519935 PPUBIRD1_1703 Pseudomonas putida BIRD-1 Peptide ABC transporter, periplasmic peptide-binding protein YP_005929575.1 1934432 R 931281 CDS YP_005929576.1 386011299 12519936 complement(1936481..1937908) 1 NC_017530.1 MltD domain-containing protein 1937908 12519936 PPUBIRD1_1704 Pseudomonas putida BIRD-1 MltD domain-containing protein YP_005929576.1 1936481 R 931281 CDS YP_005929577.1 386011300 12519937 complement(1938009..1938788) 1 NC_017530.1 Hydroxyacylglutathione hydrolase; protein GloB 1938788 gloB 12519937 gloB Pseudomonas putida BIRD-1 protein GloB YP_005929577.1 1938009 R 931281 CDS YP_005929578.1 386011301 12519938 1938874..1939647 1 NC_017530.1 hypothetical protein 1939647 12519938 PPUBIRD1_1706 Pseudomonas putida BIRD-1 hypothetical protein YP_005929578.1 1938874 D 931281 CDS YP_005929579.1 386011302 12519939 1939663..1940109 1 NC_017530.1 Ribonuclease HI; protein RnhA 1940109 rnhA 12519939 rnhA Pseudomonas putida BIRD-1 protein RnhA YP_005929579.1 1939663 D 931281 CDS YP_005929580.1 386011303 12519940 1940160..1940918 1 NC_017530.1 DNA polymerase III subunit epsilon; DnaQ 1940918 dnaQ 12519940 dnaQ Pseudomonas putida BIRD-1 DnaQ YP_005929580.1 1940160 D 931281 CDS YP_005929581.1 386011304 12519941 1941172..1943445 1 NC_017530.1 lysine decarboxylase 1943445 12519941 PPUBIRD1_1710 Pseudomonas putida BIRD-1 lysine decarboxylase YP_005929581.1 1941172 D 931281 CDS YP_005929582.1 386011305 12519942 complement(1943429..1943647) 1 NC_017530.1 hypothetical protein 1943647 12519942 PPUBIRD1_1711 Pseudomonas putida BIRD-1 hypothetical protein YP_005929582.1 1943429 R 931281 CDS YP_005929583.1 386011306 12519943 1943804..1944364 1 NC_017530.1 NADPH-dependent FMN reductase; ChrR 1944364 chrR 12519943 chrR Pseudomonas putida BIRD-1 ChrR YP_005929583.1 1943804 D 931281 CDS YP_005929584.1 386011307 12519944 complement(1944470..1946542) 1 NC_017530.1 TonB-dependent receptor 1946542 12519944 PPUBIRD1_1713 Pseudomonas putida BIRD-1 TonB-dependent receptor YP_005929584.1 1944470 R 931281 CDS YP_005929585.1 386011308 12519945 1946763..1947011 1 NC_017530.1 LuxR family transcriptional regulator 1947011 12519945 PPUBIRD1_1714 Pseudomonas putida BIRD-1 LuxR family transcriptional regulator YP_005929585.1 1946763 D 931281 CDS YP_005929586.1 386011309 12519946 1947023..1947370 1 NC_017530.1 hypothetical protein 1947370 12519946 PPUBIRD1_1715 Pseudomonas putida BIRD-1 hypothetical protein YP_005929586.1 1947023 D 931281 CDS YP_005929587.1 386011310 12519947 1947363..1947725 1 NC_017530.1 hypothetical protein 1947725 12519947 PPUBIRD1_1716 Pseudomonas putida BIRD-1 hypothetical protein YP_005929587.1 1947363 D 931281 CDS YP_005929588.1 386011311 12519948 complement(1947722..1948102) 1 NC_017530.1 Transcriptional regulator-related protein 1948102 12519948 PPUBIRD1_1717 Pseudomonas putida BIRD-1 Transcriptional regulator-related protein YP_005929588.1 1947722 R 931281 CDS YP_005929589.1 386011312 12519949 1948408..1948545 1 NC_017530.1 Phage transcriptional activator, Ogr/delta 1948545 12519949 PPUBIRD1_1718 Pseudomonas putida BIRD-1 Phage transcriptional activator, Ogr/delta YP_005929589.1 1948408 D 931281 CDS YP_005929590.1 386011313 12519950 complement(1948636..1950105) 1 NC_017530.1 NADH dehydrogenase subunit N 1950105 12519950 PPUBIRD1_1719 Pseudomonas putida BIRD-1 NADH dehydrogenase subunit N YP_005929590.1 1948636 R 931281 CDS YP_005929591.1 386011314 12519951 complement(1950113..1951645) 1 NC_017530.1 NADH dehydrogenase subunit M; NuoM 1951645 nuoM 12519951 nuoM Pseudomonas putida BIRD-1 NuoM YP_005929591.1 1950113 R 931281 CDS YP_005929592.1 386011315 12519952 complement(1951686..1953539) 1 NC_017530.1 NADH-quinone oxidoreductase subunit L 1953539 12519952 PPUBIRD1_1721 Pseudomonas putida BIRD-1 NADH-quinone oxidoreductase subunit L YP_005929592.1 1951686 R 931281 CDS YP_005929593.1 386011316 12519953 complement(1953536..1953844) 1 NC_017530.1 NADH-quinone oxidoreductase subunit K; NouK 1953844 nouK 12519953 nouK Pseudomonas putida BIRD-1 NouK YP_005929593.1 1953536 R 931281 CDS YP_005929594.1 386011317 12519954 complement(1953848..1954348) 1 NC_017530.1 NADH dehydrogenase subunit J 1954348 12519954 PPUBIRD1_1723 Pseudomonas putida BIRD-1 NADH dehydrogenase subunit J YP_005929594.1 1953848 R 931281 CDS YP_005929595.1 386011318 12519955 complement(1954359..1954907) 1 NC_017530.1 NADH-quinone oxidoreductase subunit I; protein NuoI 1954907 nuoI 12519955 nuoI Pseudomonas putida BIRD-1 protein NuoI YP_005929595.1 1954359 R 931281 CDS YP_005929596.1 386011319 12519956 complement(1954919..1955926) 1 NC_017530.1 NADH-quinone oxidoreductase subunit H; protein NuoH 1955926 nuoH 12519956 nuoH Pseudomonas putida BIRD-1 protein NuoH YP_005929596.1 1954919 R 931281 CDS YP_005929597.1 386011320 12519957 complement(1955923..1958637) 1 NC_017530.1 NADH-quinone oxidoreductase subunit G 1958637 12519957 PPUBIRD1_1726 Pseudomonas putida BIRD-1 NADH-quinone oxidoreductase subunit G YP_005929597.1 1955923 R 931281 CDS YP_005929598.1 386011321 12519958 complement(1958770..1960146) 1 NC_017530.1 NADH-quinone oxidoreductase subunit F 1960146 12519958 PPUBIRD1_1727 Pseudomonas putida BIRD-1 NADH-quinone oxidoreductase subunit F YP_005929598.1 1958770 R 931281 CDS YP_005929599.1 386011322 12519959 complement(1960143..1960640) 1 NC_017530.1 NADH dehydrogenase subunit E 1960640 12519959 PPUBIRD1_1728 Pseudomonas putida BIRD-1 NADH dehydrogenase subunit E YP_005929599.1 1960143 R 931281 CDS YP_005929600.1 386011323 12519960 complement(1960643..1962424) 1 NC_017530.1 NADH-quinone oxidoreductase subunit C/D; NuoCD 1962424 nuoCD 12519960 nuoCD Pseudomonas putida BIRD-1 NuoCD YP_005929600.1 1960643 R 931281 CDS YP_005929601.1 386011324 12519961 complement(1962504..1963181) 1 NC_017530.1 NADH-quinone oxidoreductase subunit B; protein NuoB 1963181 nuoB 12519961 nuoB Pseudomonas putida BIRD-1 protein NuoB YP_005929601.1 1962504 R 931281 CDS YP_005929602.1 386011325 12519962 complement(1963191..1963604) 1 NC_017530.1 NADH-quinone oxidoreductase subunit A; protein NuoA 1963604 nuoA 12519962 nuoA Pseudomonas putida BIRD-1 protein NuoA YP_005929602.1 1963191 R 931281 CDS YP_005929603.1 386011326 12519963 complement(1963988..1964323) 1 NC_017530.1 hypothetical protein 1964323 12519963 PPUBIRD1_1732 Pseudomonas putida BIRD-1 hypothetical protein YP_005929603.1 1963988 R 931281 CDS YP_005929604.1 386011327 12519964 complement(1964675..1965946) 1 NC_017530.1 hypothetical protein 1965946 12519964 PPUBIRD1_1733 Pseudomonas putida BIRD-1 hypothetical protein YP_005929604.1 1964675 R 931281 CDS YP_005929605.1 386011328 12519965 complement(1966187..1967512) 1 NC_017530.1 Isocitrate lyase 1967512 12519965 PPUBIRD1_1734 Pseudomonas putida BIRD-1 Isocitrate lyase YP_005929605.1 1966187 R 931281 CDS YP_005929606.1 386011329 12519966 complement(1968003..1968743) 1 NC_017530.1 NolW domain-containing protein 1968743 12519966 PPUBIRD1_1735 Pseudomonas putida BIRD-1 NolW domain-containing protein YP_005929606.1 1968003 R 931281 CDS YP_005929607.1 386011330 12519967 1968893..1970068 1 NC_017530.1 hypothetical protein 1970068 12519967 PPUBIRD1_1736 Pseudomonas putida BIRD-1 hypothetical protein YP_005929607.1 1968893 D 931281 CDS YP_005929608.1 386011331 12519968 1970122..1971831 1 NC_017530.1 Peptidase S8 and S53, subtilisin, kexin, sedolisin 1971831 12519968 PPUBIRD1_1737 Pseudomonas putida BIRD-1 Peptidase S8 and S53, subtilisin, kexin, sedolisin YP_005929608.1 1970122 D 931281 CDS YP_005929609.1 386011332 12519969 1971915..1973357 1 NC_017530.1 sulfate transporter 1973357 12519969 PPUBIRD1_1738 Pseudomonas putida BIRD-1 sulfate transporter YP_005929609.1 1971915 D 931281 CDS YP_005929610.1 386011333 12519970 complement(1973470..1975581) 1 NC_017530.1 Elongation factor G 2 1975581 12519970 PPUBIRD1_1739 Pseudomonas putida BIRD-1 Elongation factor G 2 YP_005929610.1 1973470 R 931281 CDS YP_005929611.1 386011334 12519971 complement(1975655..1976080) 1 NC_017530.1 hypothetical protein 1976080 12519971 PPUBIRD1_1740 Pseudomonas putida BIRD-1 hypothetical protein YP_005929611.1 1975655 R 931281 CDS YP_005929612.1 386011335 12519972 1976292..1976594 1 NC_017530.1 hypothetical protein 1976594 12519972 PPUBIRD1_1741 Pseudomonas putida BIRD-1 hypothetical protein YP_005929612.1 1976292 D 931281 CDS YP_005929613.1 386011336 12519973 complement(1976598..1977848) 1 NC_017530.1 bifunctional; Aminotransferase class-III 1977848 12519973 PPUBIRD1_1742 Pseudomonas putida BIRD-1 Aminotransferase class-III YP_005929613.1 1976598 R 931281 CDS YP_005929614.1 386011337 12519974 complement(1978028..1978924) 1 NC_017530.1 LysR family transcriptional regulator 1978924 12519974 PPUBIRD1_1743 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005929614.1 1978028 R 931281 CDS YP_005929615.1 386011338 12519975 1979180..1980562 1 NC_017530.1 amino acid ABC transporter permease; GabP_2 1980562 gabP_2 12519975 gabP_2 Pseudomonas putida BIRD-1 GabP_2 YP_005929615.1 1979180 D 931281 CDS YP_005929616.1 386011339 12519976 1980620..1981117 1 NC_017530.1 hypothetical protein 1981117 12519976 PPUBIRD1_1745 Pseudomonas putida BIRD-1 hypothetical protein YP_005929616.1 1980620 D 931281 CDS YP_005929617.1 386011340 12519977 1981205..1981900 1 NC_017530.1 glutathione S-transferase 1981900 12519977 PPUBIRD1_1746 Pseudomonas putida BIRD-1 glutathione S-transferase YP_005929617.1 1981205 D 931281 CDS YP_005929618.1 386011341 12519978 complement(1982233..1983849) 1 NC_017530.1 Phosphate transporter 1983849 12519978 PPUBIRD1_1747 Pseudomonas putida BIRD-1 Phosphate transporter YP_005929618.1 1982233 R 931281 CDS YP_005929619.1 386011342 12519979 1983978..1984364 1 NC_017530.1 hypothetical protein 1984364 12519979 PPUBIRD1_1748 Pseudomonas putida BIRD-1 hypothetical protein YP_005929619.1 1983978 D 931281 CDS YP_005929620.1 386011343 12519980 1984375..1984818 1 NC_017530.1 Acetyltransferase 1984818 12519980 PPUBIRD1_1749 Pseudomonas putida BIRD-1 Acetyltransferase YP_005929620.1 1984375 D 931281 CDS YP_005929621.1 386011344 12519981 1984926..1985315 1 NC_017530.1 Helix-turn-helix domain-containing protein 1985315 12519981 PPUBIRD1_1750 Pseudomonas putida BIRD-1 Helix-turn-helix domain-containing protein YP_005929621.1 1984926 D 931281 CDS YP_005929622.1 386011345 12519982 1985436..1986017 1 NC_017530.1 DNA-binding response regulator GacA; GacA 1986017 gacA 12519982 gacA Pseudomonas putida BIRD-1 GacA YP_005929622.1 1985436 D 931281 CDS YP_005929623.1 386011346 12519983 1986024..1987847 1 NC_017530.1 UvrABC system protein C; UvrC protein 1987847 uvrC 12519983 uvrC Pseudomonas putida BIRD-1 UvrC protein YP_005929623.1 1986024 D 931281 CDS YP_005929624.1 386011347 12519984 1987881..1988441 1 NC_017530.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1988441 12519984 PPUBIRD1_1753 Pseudomonas putida BIRD-1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_005929624.1 1987881 D 931281 CDS YP_005929625.1 386011348 12519986 complement(1988939..1989454) 1 NC_017530.1 sigma-70 region 4 type 2 1989454 12519986 PPUBIRD1_1754 Pseudomonas putida BIRD-1 sigma-70 region 4 type 2 YP_005929625.1 1988939 R 931281 CDS YP_005929626.1 386011349 12519987 complement(1989903..1990202) 1 NC_017530.1 hypothetical protein 1990202 12519987 PPUBIRD1_1755 Pseudomonas putida BIRD-1 hypothetical protein YP_005929626.1 1989903 R 931281 CDS YP_005929627.1 386011350 12519988 1990290..1990994 1 NC_017530.1 Cro/CI family transcriptional regulator 1990994 12519988 PPUBIRD1_1756 Pseudomonas putida BIRD-1 Cro/CI family transcriptional regulator YP_005929627.1 1990290 D 931281 CDS YP_005929628.1 386011351 12519989 complement(1991293..1993245) 1 NC_017530.1 Carbamoyl-phosphate synthase L chain, ATP-binding protein 1993245 12519989 PPUBIRD1_1757 Pseudomonas putida BIRD-1 Carbamoyl-phosphate synthase L chain, ATP-binding protein YP_005929628.1 1991293 R 931281 CDS YP_005929629.1 386011352 12519990 complement(1993242..1994057) 1 NC_017530.1 Gamma-carboxygeranoyl-CoA hydratase 1994057 12519990 PPUBIRD1_1758 Pseudomonas putida BIRD-1 Gamma-carboxygeranoyl-CoA hydratase YP_005929629.1 1993242 R 931281 CDS YP_005929630.1 386011353 12519991 complement(1994061..1995668) 1 NC_017530.1 similar to mitochondrial protein; Methylcrotonoyl-CoA carboxylase beta chain 1995668 12519991 PPUBIRD1_1759 Pseudomonas putida BIRD-1 Methylcrotonoyl-CoA carboxylase beta chain YP_005929630.1 1994061 R 931281 CDS YP_005929631.1 386011354 12519992 complement(1995688..1996851) 1 NC_017530.1 acyl-CoA dehydrogenase domain-containing protein; Ivd 1996851 ivd 12519992 ivd Pseudomonas putida BIRD-1 Ivd YP_005929631.1 1995688 R 931281 CDS YP_005929632.1 386011355 12519993 1997176..1998858 1 NC_017530.1 AMP-binding protein 1998858 12519993 PPUBIRD1_1761 Pseudomonas putida BIRD-1 AMP-binding protein YP_005929632.1 1997176 D 931281 CDS YP_005929633.1 386011356 12519994 1999378..2001396 1 NC_017530.1 Alpha amylase, catalytic region 2001396 12519994 PPUBIRD1_1763 Pseudomonas putida BIRD-1 Alpha amylase, catalytic region YP_005929633.1 1999378 D 931281 CDS YP_005929634.1 386011357 12519995 2001562..2004891 1 NC_017530.1 Trehalose synthase 2004891 12519995 PPUBIRD1_1765 Pseudomonas putida BIRD-1 Trehalose synthase YP_005929634.1 2001562 D 931281 CDS YP_005929635.1 386011358 12519996 2004888..2007098 1 NC_017530.1 1,4-alpha-glucan-branching enzyme; protein GlgB 2007098 glgB 12519996 glgB Pseudomonas putida BIRD-1 protein GlgB YP_005929635.1 2004888 D 931281 CDS YP_005929636.1 386011359 12519997 complement(2007205..2008281) 1 NC_017530.1 Outer membrane autotransporter 2008281 12519997 PPUBIRD1_1767 Pseudomonas putida BIRD-1 Outer membrane autotransporter YP_005929636.1 2007205 R 931281 CDS YP_005929637.1 386011360 12519998 complement(2008599..2009393) 1 NC_017530.1 endonuclease/exonuclease/phosphatase 2009393 12519998 PPUBIRD1_1768 Pseudomonas putida BIRD-1 endonuclease/exonuclease/phosphatase YP_005929637.1 2008599 R 931281 CDS YP_005929638.1 386011361 12519999 complement(2009515..2011668) 1 NC_017530.1 glycogen debranching protein GlgX 2011668 12519999 PPUBIRD1_1769 Pseudomonas putida BIRD-1 glycogen debranching protein GlgX YP_005929638.1 2009515 R 931281 CDS YP_005929639.1 386011362 12520000 complement(2011805..2012071) 1 NC_017530.1 hypothetical protein 2012071 12520000 PPUBIRD1_1771 Pseudomonas putida BIRD-1 hypothetical protein YP_005929639.1 2011805 R 931281 CDS YP_005929640.1 386011363 12520001 complement(2012086..2014857) 1 NC_017530.1 Malto-oligosyltrehalose synthase 2014857 12520001 PPUBIRD1_1772 Pseudomonas putida BIRD-1 Malto-oligosyltrehalose synthase YP_005929640.1 2012086 R 931281 CDS YP_005929641.1 386011364 12520002 complement(2014854..2016923) 1 NC_017530.1 4-alpha-glucanotransferase; MalQ 2016923 malQ 12520002 malQ Pseudomonas putida BIRD-1 MalQ YP_005929641.1 2014854 R 931281 CDS YP_005929642.1 386011365 12520003 complement(2016920..2018641) 1 NC_017530.1 Malto-oligosyltrehalose trehalohydrolase 2018641 12520003 PPUBIRD1_1774 Pseudomonas putida BIRD-1 Malto-oligosyltrehalose trehalohydrolase YP_005929642.1 2016920 R 931281 CDS YP_005929643.1 386011366 12520004 complement(2018677..2020236) 1 NC_017530.1 Glycogen synthase; protein GlgA 2020236 glgA 12520004 glgA Pseudomonas putida BIRD-1 protein GlgA YP_005929643.1 2018677 R 931281 CDS YP_005929644.1 386011367 12520005 complement(2020884..2021051) 1 NC_017530.1 hypothetical protein 2021051 12520005 PPUBIRD1_1776 Pseudomonas putida BIRD-1 hypothetical protein YP_005929644.1 2020884 R 931281 CDS YP_005929645.1 386011368 12520006 2021254..2022237 1 NC_017530.1 6-phosphogluconate dehydrogenase-like protein; Gnd 2022237 gnd 12520006 gnd Pseudomonas putida BIRD-1 Gnd YP_005929645.1 2021254 D 931281 CDS YP_005929646.1 386011369 12520007 2022234..2023739 1 NC_017530.1 glucose-6-phosphate 1-dehydrogenase 2023739 12520007 PPUBIRD1_1778 Pseudomonas putida BIRD-1 glucose-6-phosphate 1-dehydrogenase YP_005929646.1 2022234 D 931281 CDS YP_005929647.1 386011370 12520008 2023805..2025601 1 NC_017530.1 Glycoside hydrolase 15-related protein 2025601 12520008 PPUBIRD1_1779 Pseudomonas putida BIRD-1 Glycoside hydrolase 15-related protein YP_005929647.1 2023805 D 931281 CDS YP_005929648.1 386011371 12520009 2025668..2026024 1 NC_017530.1 Glyoxalase/bleomycin resistance protein/dioxygenase 2026024 12520009 PPUBIRD1_1780 Pseudomonas putida BIRD-1 Glyoxalase/bleomycin resistance protein/dioxygenase YP_005929648.1 2025668 D 931281 CDS YP_005929649.1 386011372 12520010 2026006..2026644 1 NC_017530.1 TetR family transcriptional regulator 2026644 12520010 PPUBIRD1_1781 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005929649.1 2026006 D 931281 CDS YP_005929650.1 386011373 12520011 complement(2026778..2028052) 1 NC_017530.1 Dihydropyrimidine dehydrogenase 2028052 12520011 PPUBIRD1_1782 Pseudomonas putida BIRD-1 Dihydropyrimidine dehydrogenase YP_005929650.1 2026778 R 931281 CDS YP_005929651.1 386011374 12520012 complement(2028053..2029420) 1 NC_017530.1 Putative oxidoreductase 2029420 12520012 PPUBIRD1_1783 Pseudomonas putida BIRD-1 Putative oxidoreductase YP_005929651.1 2028053 R 931281 CDS YP_005929652.1 386011375 12520013 complement(2029556..2030995) 1 NC_017530.1 D-hydantoinase/dihydropyrimidinase 2030995 12520013 PPUBIRD1_1784 Pseudomonas putida BIRD-1 D-hydantoinase/dihydropyrimidinase YP_005929652.1 2029556 R 931281 CDS YP_005929653.1 386011376 12520014 2031339..2032829 1 NC_017530.1 NCS1 nucleoside transporter 2032829 12520014 PPUBIRD1_1785 Pseudomonas putida BIRD-1 NCS1 nucleoside transporter YP_005929653.1 2031339 D 931281 CDS YP_005929654.1 386011377 12520015 2032879..2034162 1 NC_017530.1 Allantoate amidohydrolase 2034162 12520015 PPUBIRD1_1786 Pseudomonas putida BIRD-1 Allantoate amidohydrolase YP_005929654.1 2032879 D 931281 CDS YP_005929655.1 386011378 12520016 complement(2034159..2035118) 1 NC_017530.1 Ribonuclease Z 2035118 12520016 PPUBIRD1_1787 Pseudomonas putida BIRD-1 Ribonuclease Z YP_005929655.1 2034159 R 931281 CDS YP_005929656.1 386011379 12520017 complement(2035206..2035751) 1 NC_017530.1 lipocalin family protein 2035751 12520017 PPUBIRD1_1788 Pseudomonas putida BIRD-1 lipocalin family protein YP_005929656.1 2035206 R 931281 CDS YP_005929657.1 386011380 12520018 complement(2035898..2037400) 1 NC_017530.1 Na(+)/H(+) antiporter nhaB; NhaB 2037400 nhaB 12520018 nhaB Pseudomonas putida BIRD-1 NhaB YP_005929657.1 2035898 R 931281 CDS YP_005929658.1 386011381 12520019 2037551..2038363 1 NC_017530.1 Enoyl-CoA hydratase 2038363 12520019 PPUBIRD1_1790 Pseudomonas putida BIRD-1 Enoyl-CoA hydratase YP_005929658.1 2037551 D 931281 CDS YP_005929659.1 386011382 12520020 2038400..2039230 1 NC_017530.1 NADH pyrophosphatase; protein NudC 2039230 nudC 12520020 nudC Pseudomonas putida BIRD-1 protein NudC YP_005929659.1 2038400 D 931281 CDS YP_005929660.1 386011383 12520021 complement(2039299..2040078) 1 NC_017530.1 hypothetical protein 2040078 12520021 PPUBIRD1_1792 Pseudomonas putida BIRD-1 hypothetical protein YP_005929660.1 2039299 R 931281 CDS YP_005929661.1 386011384 12520022 complement(2040247..2041077) 1 NC_017530.1 alpha/beta hydrolase fold; hypothetical protein 2041077 est 12520022 est Pseudomonas putida BIRD-1 hypothetical protein YP_005929661.1 2040247 R 931281 CDS YP_005929662.1 386011385 12520023 complement(2041271..2042560) 1 NC_017530.1 FAD dependent oxidoreductase 2042560 12520023 PPUBIRD1_1794 Pseudomonas putida BIRD-1 FAD dependent oxidoreductase YP_005929662.1 2041271 R 931281 CDS YP_005929663.1 386011386 12520024 complement(2042707..2044668) 1 NC_017530.1 DNA topoisomerase III; protein TopB 2044668 topB 12520024 topB Pseudomonas putida BIRD-1 protein TopB YP_005929663.1 2042707 R 931281 CDS YP_005929664.1 386011387 12520025 complement(2044876..2045304) 1 NC_017530.1 Acetyltransferase 2045304 12520025 PPUBIRD1_1796 Pseudomonas putida BIRD-1 Acetyltransferase YP_005929664.1 2044876 R 931281 CDS YP_005929665.1 386011388 12520026 complement(2045297..2046463) 1 NC_017530.1 cupin 2046463 12520026 PPUBIRD1_1797 Pseudomonas putida BIRD-1 cupin YP_005929665.1 2045297 R 931281 CDS YP_005929666.1 386011389 12520027 complement(2046545..2047915) 1 NC_017530.1 Adenylosuccinate lyase; protein PurB 2047915 purB 12520027 purB Pseudomonas putida BIRD-1 protein PurB YP_005929666.1 2046545 R 931281 CDS YP_005929667.1 386011390 12520028 complement(2048053..2048679) 1 NC_017530.1 HflD-like high frequency lysogenization protein 2048679 12520028 PPUBIRD1_1799 Pseudomonas putida BIRD-1 HflD-like high frequency lysogenization protein YP_005929667.1 2048053 R 931281 CDS YP_005929668.1 386011391 12520029 complement(2048676..2049800) 1 NC_017530.1 tRNA-specific 2-thiouridylase mnmA; protein MnmA 2049800 mnmA 12520029 mnmA Pseudomonas putida BIRD-1 protein MnmA YP_005929668.1 2048676 R 931281 CDS YP_005929669.1 386011392 12520030 complement(2049860..2050300) 1 NC_017530.1 NUDIX hydrolase 2050300 12520030 PPUBIRD1_1801 Pseudomonas putida BIRD-1 NUDIX hydrolase YP_005929669.1 2049860 R 931281 CDS YP_005929670.1 386011393 12520031 complement(2050503..2052728) 1 NC_017530.1 isocitrate dehydrogenase 2052728 12520031 PPUBIRD1_1802 Pseudomonas putida BIRD-1 isocitrate dehydrogenase YP_005929670.1 2050503 R 931281 CDS YP_005929671.1 386011394 12520032 2053143..2054399 1 NC_017530.1 isocitrate dehydrogenase 2054399 12520032 PPUBIRD1_1803 Pseudomonas putida BIRD-1 isocitrate dehydrogenase YP_005929671.1 2053143 D 931281 CDS YP_005929672.1 386011395 12520033 complement(2054471..2054737) 1 NC_017530.1 Cold-shock DNA-binding domain-containing protein 2054737 12520033 PPUBIRD1_1804 Pseudomonas putida BIRD-1 Cold-shock DNA-binding domain-containing protein YP_005929672.1 2054471 R 931281 CDS YP_005929673.1 386011396 12520034 2055085..2055330 1 NC_017530.1 ATP-dependent Clp protease adapter protein clpS; protein ClpS 2055330 clpS 12520034 clpS Pseudomonas putida BIRD-1 protein ClpS YP_005929673.1 2055085 D 931281 CDS YP_005929674.1 386011397 12520035 2055361..2057631 1 NC_017530.1 ATP-dependent Clp protease ATP-binding subunit clpA; protein ClpA 2057631 clpA 12520035 clpA Pseudomonas putida BIRD-1 protein ClpA YP_005929674.1 2055361 D 931281 CDS YP_005929675.1 386011398 12520036 complement(2057717..2057935) 1 NC_017530.1 translation initiation factor IF-1 2057935 12520036 PPUBIRD1_1807 Pseudomonas putida BIRD-1 translation initiation factor IF-1 YP_005929675.1 2057717 R 931281 CDS YP_005929676.1 386011399 12520037 complement(2058037..2058744) 1 NC_017530.1 Putative arginyl-tRNA--protein transferase 2058744 12520037 PPUBIRD1_1808 Pseudomonas putida BIRD-1 Putative arginyl-tRNA--protein transferase YP_005929676.1 2058037 R 931281 CDS YP_005929677.1 386011400 12520038 complement(2058801..2059481) 1 NC_017530.1 Leucyl/phenylalanyl-tRNA--protein transferase; hypothetical protein 2059481 aat 12520038 aat Pseudomonas putida BIRD-1 hypothetical protein YP_005929677.1 2058801 R 931281 CDS YP_005929678.1 386011401 12520039 2059887..2062391 1 NC_017530.1 DNA translocase ftsK; FtsK 2062391 ftsK 12520039 ftsK Pseudomonas putida BIRD-1 FtsK YP_005929678.1 2059887 D 931281 CDS YP_005929679.1 386011402 12520040 2062454..2063077 1 NC_017530.1 outer-membrane lipoprotein carrier protein; LolA protein 2063077 lolA 12520040 lolA Pseudomonas putida BIRD-1 LolA protein YP_005929679.1 2062454 D 931281 CDS YP_005929680.1 386011403 12520041 2063090..2064415 1 NC_017530.1 Recombination factor protein RarA 2064415 12520041 PPUBIRD1_1812 Pseudomonas putida BIRD-1 Recombination factor protein RarA YP_005929680.1 2063090 D 931281 CDS YP_005929681.1 386011404 12520042 2064412..2064786 1 NC_017530.1 Protein crcB homolog; protein CrcB 2064786 crcB 12520042 crcB Pseudomonas putida BIRD-1 protein CrcB YP_005929681.1 2064412 D 931281 CDS YP_005929682.1 386011405 12520043 2064817..2066097 1 NC_017530.1 Seryl-tRNA synthetase; SerS protein 2066097 serS 12520043 serS Pseudomonas putida BIRD-1 SerS protein YP_005929682.1 2064817 D 931281 CDS YP_005929683.1 386011406 12520044 2066098..2067489 1 NC_017530.1 Siroheme synthase; bifunctional; protein CysG 2067489 cysG 12520044 cysG Pseudomonas putida BIRD-1 protein CysG YP_005929683.1 2066098 D 931281 CDS YP_005929684.1 386011407 12520045 complement(2067596..2068555) 1 NC_017530.1 glutathione S-transferase 2068555 12520045 PPUBIRD1_1816 Pseudomonas putida BIRD-1 glutathione S-transferase YP_005929684.1 2067596 R 931281 CDS YP_005929685.1 386011408 12520046 complement(2068650..2069651) 1 NC_017530.1 hypothetical protein 2069651 12520046 PPUBIRD1_1817 Pseudomonas putida BIRD-1 hypothetical protein YP_005929685.1 2068650 R 931281 CDS YP_005929686.1 386011409 12520047 complement(2069648..2069983) 1 NC_017530.1 hypothetical protein 2069983 12520047 PPUBIRD1_1818 Pseudomonas putida BIRD-1 hypothetical protein YP_005929686.1 2069648 R 931281 CDS YP_005929687.1 386011410 12520048 complement(2069980..2070276) 1 NC_017530.1 hypothetical protein 2070276 12520048 PPUBIRD1_1819 Pseudomonas putida BIRD-1 hypothetical protein YP_005929687.1 2069980 R 931281 CDS YP_005929688.1 386011411 12520049 complement(2070276..2070635) 1 NC_017530.1 Sulfur relay protein TusC 2070635 12520049 PPUBIRD1_1820 Pseudomonas putida BIRD-1 Sulfur relay protein TusC YP_005929688.1 2070276 R 931281 CDS YP_005929689.1 386011412 12520050 complement(2070637..2071029) 1 NC_017530.1 Sulfur transfer complex subunit TusD 2071029 12520050 PPUBIRD1_1821 Pseudomonas putida BIRD-1 Sulfur transfer complex subunit TusD YP_005929689.1 2070637 R 931281 CDS YP_005929690.1 386011413 12520051 complement(2071125..2072504) 1 NC_017530.1 uracil-xanthine permease 2072504 12520051 PPUBIRD1_1822 Pseudomonas putida BIRD-1 uracil-xanthine permease YP_005929690.1 2071125 R 931281 CDS YP_005929691.1 386011414 12520052 complement(2072636..2073307) 1 NC_017530.1 hypothetical protein 2073307 12520052 PPUBIRD1_1823 Pseudomonas putida BIRD-1 hypothetical protein YP_005929691.1 2072636 R 931281 CDS YP_005929692.1 386011415 12520054 complement(2073649..2073816) 1 NC_017530.1 integrase; hypothetical protein 2073816 int 12520054 int Pseudomonas putida BIRD-1 hypothetical protein YP_005929692.1 2073649 R 931281 CDS YP_005929693.1 386011416 12520055 complement(2074462..2074926) 1 NC_017530.1 hemerythrin HHE cation binding domain-containing protein 2074926 12520055 PPUBIRD1_1825 Pseudomonas putida BIRD-1 hemerythrin HHE cation binding domain-containing protein YP_005929693.1 2074462 R 931281 CDS YP_005929694.1 386011417 12520056 2075238..2075429 1 NC_017530.1 hypothetical protein 2075429 12520056 PPUBIRD1_1826 Pseudomonas putida BIRD-1 hypothetical protein YP_005929694.1 2075238 D 931281 CDS YP_005929695.1 386011418 12520057 complement(2075673..2076998) 1 NC_017530.1 short-chain dehydrogenase 2076998 12520057 PPUBIRD1_1827 Pseudomonas putida BIRD-1 short-chain dehydrogenase YP_005929695.1 2075673 R 931281 CDS YP_005929696.1 386011419 12520058 complement(2077031..2077264) 1 NC_017530.1 hypothetical protein 2077264 12520058 PPUBIRD1_1828 Pseudomonas putida BIRD-1 hypothetical protein YP_005929696.1 2077031 R 931281 CDS YP_005929697.1 386011420 12520059 complement(2077278..2078387) 1 NC_017530.1 alcohol dehydrogenase GroES domain-containing protein 2078387 12520059 PPUBIRD1_1829 Pseudomonas putida BIRD-1 alcohol dehydrogenase GroES domain-containing protein YP_005929697.1 2077278 R 931281 CDS YP_005929698.1 386011421 12520060 2079140..2080258 1 NC_017530.1 Sensor histidine kinase 2080258 12520060 PPUBIRD1_1830 Pseudomonas putida BIRD-1 Sensor histidine kinase YP_005929698.1 2079140 D 931281 CDS YP_005929699.1 386011422 12520061 2080963..2081235 1 NC_017530.1 Peptidase 2081235 12520061 PPUBIRD1_1831 Pseudomonas putida BIRD-1 Peptidase YP_005929699.1 2080963 D 931281 CDS YP_005929700.1 386011423 12520062 complement(2082463..2083134) 1 NC_017530.1 hypothetical protein 2083134 12520062 PPUBIRD1_1832 Pseudomonas putida BIRD-1 hypothetical protein YP_005929700.1 2082463 R 931281 CDS YP_005929701.1 386011424 12520063 2084060..2085268 1 NC_017530.1 Major facilitator transporter 2085268 12520063 PPUBIRD1_1833 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005929701.1 2084060 D 931281 CDS YP_005929702.1 386011425 12520064 2085425..2086030 1 NC_017530.1 TetR family transcriptional regulator 2086030 12520064 PPUBIRD1_1834 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005929702.1 2085425 D 931281 CDS YP_005929703.1 386011426 12520065 complement(2086341..2087702) 1 NC_017530.1 Na(+)/H(+) antiporter nhaA 2 2087702 12520065 PPUBIRD1_1835 Pseudomonas putida BIRD-1 Na(+)/H(+) antiporter nhaA 2 YP_005929703.1 2086341 R 931281 CDS YP_005929704.1 386011427 12520066 2088006..2089979 1 NC_017530.1 Choline/carnitine/betaine transporter family protein 2089979 12520066 PPUBIRD1_1836 Pseudomonas putida BIRD-1 Choline/carnitine/betaine transporter family protein YP_005929704.1 2088006 D 931281 CDS YP_005929705.1 386011428 12520067 complement(2090007..2090423) 1 NC_017530.1 hypothetical protein 2090423 12520067 PPUBIRD1_1837 Pseudomonas putida BIRD-1 hypothetical protein YP_005929705.1 2090007 R 931281 CDS YP_005929706.1 386011429 12520068 complement(2090420..2092459) 1 NC_017530.1 Transporter 2092459 12520068 PPUBIRD1_1838 Pseudomonas putida BIRD-1 Transporter YP_005929706.1 2090420 R 931281 CDS YP_005929707.1 386011430 12520069 complement(2092475..2093425) 1 NC_017530.1 Periplasmic binding protein, putative 2093425 12520069 PPUBIRD1_1839 Pseudomonas putida BIRD-1 Periplasmic binding protein, putative YP_005929707.1 2092475 R 931281 CDS YP_005929708.1 386011431 12520070 complement(2093530..2094984) 1 NC_017530.1 TrkH family potassium uptake protein 2094984 12520070 PPUBIRD1_1840 Pseudomonas putida BIRD-1 TrkH family potassium uptake protein YP_005929708.1 2093530 R 931281 CDS YP_005929709.1 386011432 12520071 complement(2095252..2095893) 1 NC_017530.1 3-oxoadipate CoA-transferase subunit B; PcaJ 2095893 pcaJ 12520071 pcaJ Pseudomonas putida BIRD-1 PcaJ YP_005929709.1 2095252 R 931281 CDS YP_005929710.1 386011433 12520072 complement(2095902..2096597) 1 NC_017530.1 3-oxoadipate CoA-transferase, subunit A; PcaI 2096597 pcaI 12520072 pcaI Pseudomonas putida BIRD-1 PcaI YP_005929710.1 2095902 R 931281 CDS YP_005929711.1 386011434 12520073 2096988..2099153 1 NC_017530.1 methyl-accepting chemotaxis sensory transducer 2099153 12520073 PPUBIRD1_1843 Pseudomonas putida BIRD-1 methyl-accepting chemotaxis sensory transducer YP_005929711.1 2096988 D 931281 CDS YP_005929712.1 386011435 12520074 complement(2099368..2100276) 1 NC_017530.1 gluconolactonase 2100276 12520074 PPUBIRD1_1844 Pseudomonas putida BIRD-1 gluconolactonase YP_005929712.1 2099368 R 931281 CDS YP_005929713.1 386011436 12520075 complement(2100288..2101106) 1 NC_017530.1 NAD-dependent epimerase/dehydratase 2101106 12520075 PPUBIRD1_1845 Pseudomonas putida BIRD-1 NAD-dependent epimerase/dehydratase YP_005929713.1 2100288 R 931281 CDS YP_005929714.1 386011437 12520076 complement(2101182..2101907) 1 NC_017530.1 Oligogalacturonate-specific porin 2101907 12520076 PPUBIRD1_1846 Pseudomonas putida BIRD-1 Oligogalacturonate-specific porin YP_005929714.1 2101182 R 931281 CDS YP_005929715.1 386011438 12520077 2102249..2103403 1 NC_017530.1 mandelate racemase/muconate lactonizing protein 2103403 12520077 PPUBIRD1_1847 Pseudomonas putida BIRD-1 mandelate racemase/muconate lactonizing protein YP_005929715.1 2102249 D 931281 CDS YP_005929716.1 386011439 12520078 2103473..2105083 1 NC_017530.1 Extracellular solute-binding protein 2105083 12520078 PPUBIRD1_1848 Pseudomonas putida BIRD-1 Extracellular solute-binding protein YP_005929716.1 2103473 D 931281 CDS YP_005929717.1 386011440 12520079 2105128..2106165 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 2106165 12520079 PPUBIRD1_1849 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005929717.1 2105128 D 931281 CDS YP_005929718.1 386011441 12520080 2106214..2107824 1 NC_017530.1 Extracellular solute-binding protein 2107824 12520080 PPUBIRD1_1850 Pseudomonas putida BIRD-1 Extracellular solute-binding protein YP_005929718.1 2106214 D 931281 CDS YP_005929719.1 386011442 12520081 2107886..2108800 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 2108800 12520081 PPUBIRD1_1851 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005929719.1 2107886 D 931281 CDS YP_005929720.1 386011443 12520082 2108812..2109651 1 NC_017530.1 ABC transporter 2109651 12520082 PPUBIRD1_1852 Pseudomonas putida BIRD-1 ABC transporter YP_005929720.1 2108812 D 931281 CDS YP_005929721.1 386011444 12520083 2109663..2110439 1 NC_017530.1 ABC transporter 2110439 12520083 PPUBIRD1_1853 Pseudomonas putida BIRD-1 ABC transporter YP_005929721.1 2109663 D 931281 CDS YP_005929722.1 386011445 12520084 2110468..2112288 1 NC_017530.1 Glycoside hydrolase family protein 2112288 12520084 PPUBIRD1_1854 Pseudomonas putida BIRD-1 Glycoside hydrolase family protein YP_005929722.1 2110468 D 931281 CDS YP_005929723.1 386011446 12520085 complement(2112273..2113019) 1 NC_017530.1 GntR family transcriptional regulator 2113019 12520085 PPUBIRD1_1855 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005929723.1 2112273 R 931281 CDS YP_005929724.1 386011447 12520086 2113116..2113844 1 NC_017530.1 GntR family transcriptional regulator 2113844 12520086 PPUBIRD1_1856 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005929724.1 2113116 D 931281 CDS YP_005929725.1 386011448 12520087 complement(2114020..2114982) 1 NC_017530.1 hypothetical protein 2114982 12520087 PPUBIRD1_1858 Pseudomonas putida BIRD-1 hypothetical protein YP_005929725.1 2114020 R 931281 CDS YP_005929726.1 386011449 12520088 2115087..2115725 1 NC_017530.1 TetR family transcriptional regulator 2115725 12520088 PPUBIRD1_1859 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005929726.1 2115087 D 931281 CDS YP_005929727.1 386011450 12520089 complement(2115729..2119292) 1 NC_017530.1 aldehyde dehydrogenase family protein, putative/cytochrome c family protein, putative; bifunctional; NdhL 2119292 ndhL 12520089 ndhL Pseudomonas putida BIRD-1 NdhL YP_005929727.1 2115729 R 931281 CDS YP_005929728.1 386011451 12520090 complement(2119289..2119762) 1 NC_017530.1 2Fe-2S iron-sulfur cluster binding domain-containing protein 2119762 12520090 PPUBIRD1_1861 Pseudomonas putida BIRD-1 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_005929728.1 2119289 R 931281 CDS YP_005929729.1 386011452 12520091 complement(2120334..2120810) 1 NC_017530.1 MarR family transcriptional regulator 2120810 12520091 PPUBIRD1_1862 Pseudomonas putida BIRD-1 MarR family transcriptional regulator YP_005929729.1 2120334 R 931281 CDS YP_005929730.1 386011453 12520092 complement(2120881..2121933) 1 NC_017530.1 hypothetical protein 2121933 12520092 PPUBIRD1_1863 Pseudomonas putida BIRD-1 hypothetical protein YP_005929730.1 2120881 R 931281 CDS YP_005929731.1 386011454 12520093 2122255..2123403 1 NC_017530.1 salicylate hydroxylase; NahG 2123403 nahG 12520093 nahG Pseudomonas putida BIRD-1 NahG YP_005929731.1 2122255 D 931281 CDS YP_005929732.1 386011455 12520094 2123400..2124206 1 NC_017530.1 Alpha/beta fold family hydrolase 2124206 12520094 PPUBIRD1_1865 Pseudomonas putida BIRD-1 Alpha/beta fold family hydrolase YP_005929732.1 2123400 D 931281 CDS YP_005929733.1 386011456 12520095 2124220..2124972 1 NC_017530.1 Maleate cis-trans isomerase 2124972 12520095 PPUBIRD1_1866 Pseudomonas putida BIRD-1 Maleate cis-trans isomerase YP_005929733.1 2124220 D 931281 CDS YP_005929734.1 386011457 12520096 2124988..2125629 1 NC_017530.1 Isochorismatase superfamily hydrolase 2125629 12520096 PPUBIRD1_1867 Pseudomonas putida BIRD-1 Isochorismatase superfamily hydrolase YP_005929734.1 2124988 D 931281 CDS YP_005929735.1 386011458 12520097 2125838..2127151 1 NC_017530.1 Major facilitator transporter 2127151 12520097 PPUBIRD1_1868 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005929735.1 2125838 D 931281 CDS YP_005929736.1 386011459 12520098 2127290..2128582 1 NC_017530.1 Porin, putative 2128582 12520098 PPUBIRD1_1869 Pseudomonas putida BIRD-1 Porin, putative YP_005929736.1 2127290 D 931281 CDS YP_005929737.1 386011460 12520099 complement(2128753..2128938) 1 NC_017530.1 hypothetical protein 2128938 12520099 PPUBIRD1_1870 Pseudomonas putida BIRD-1 hypothetical protein YP_005929737.1 2128753 R 931281 CDS YP_005929738.1 386011461 12520100 complement(2129476..2129631) 1 NC_017530.1 hypothetical protein 2129631 12520100 PPUBIRD1_1871 Pseudomonas putida BIRD-1 hypothetical protein YP_005929738.1 2129476 R 931281 CDS YP_005929739.1 386011462 12520101 complement(2129786..2130691) 1 NC_017530.1 LysR family transcriptional regulator 2130691 12520101 PPUBIRD1_1872 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005929739.1 2129786 R 931281 CDS YP_005929740.1 386011463 12520102 2130790..2131551 1 NC_017530.1 hypothetical protein 2131551 12520102 PPUBIRD1_1873 Pseudomonas putida BIRD-1 hypothetical protein YP_005929740.1 2130790 D 931281 CDS YP_005929741.1 386011464 12520103 complement(2131553..2132977) 1 NC_017530.1 Diguanylate cyclase 2132977 12520103 PPUBIRD1_1874 Pseudomonas putida BIRD-1 Diguanylate cyclase YP_005929741.1 2131553 R 931281 CDS YP_005929742.1 386011465 12520104 complement(2133115..2134944) 1 NC_017530.1 Sodium/sulfate symporter family protein 2134944 12520104 PPUBIRD1_1875 Pseudomonas putida BIRD-1 Sodium/sulfate symporter family protein YP_005929742.1 2133115 R 931281 CDS YP_005929743.1 386011466 12520105 complement(2135071..2135463) 1 NC_017530.1 hypothetical protein 2135463 12520105 PPUBIRD1_1876 Pseudomonas putida BIRD-1 hypothetical protein YP_005929743.1 2135071 R 931281 CDS YP_005929744.1 386011467 12520106 complement(2135968..2136258) 1 NC_017530.1 hypothetical protein 2136258 12520106 PPUBIRD1_1878 Pseudomonas putida BIRD-1 hypothetical protein YP_005929744.1 2135968 R 931281 CDS YP_005929745.1 386011468 12520107 2136376..2136726 1 NC_017530.1 hypothetical protein 2136726 12520107 PPUBIRD1_1879 Pseudomonas putida BIRD-1 hypothetical protein YP_005929745.1 2136376 D 931281 CDS YP_005929746.1 386011469 12520108 2136896..2137717 1 NC_017530.1 type 12 methyltransferase 2137717 12520108 PPUBIRD1_1880 Pseudomonas putida BIRD-1 type 12 methyltransferase YP_005929746.1 2136896 D 931281 CDS YP_005929747.1 386011470 12520109 complement(2137718..2138485) 1 NC_017530.1 short-chain dehydrogenase 2138485 12520109 PPUBIRD1_1881 Pseudomonas putida BIRD-1 short-chain dehydrogenase YP_005929747.1 2137718 R 931281 CDS YP_005929748.1 386011471 12520110 complement(2138522..2139589) 1 NC_017530.1 Aminoglycoside phosphotransferase 2139589 12520110 PPUBIRD1_1882 Pseudomonas putida BIRD-1 Aminoglycoside phosphotransferase YP_005929748.1 2138522 R 931281 CDS YP_005929749.1 386011472 12520111 complement(2139773..2140090) 1 NC_017530.1 Sterol-binding domain-containing protein 2140090 12520111 PPUBIRD1_1883 Pseudomonas putida BIRD-1 Sterol-binding domain-containing protein YP_005929749.1 2139773 R 931281 CDS YP_005929750.1 386011473 12520112 complement(2140147..2140857) 1 NC_017530.1 phosphoglycerate mutase 2140857 12520112 PPUBIRD1_1884 Pseudomonas putida BIRD-1 phosphoglycerate mutase YP_005929750.1 2140147 R 931281 CDS YP_005929751.1 386011474 12520113 2141055..2142074 1 NC_017530.1 Putative periplasmic protease 2142074 12520113 PPUBIRD1_1885 Pseudomonas putida BIRD-1 Putative periplasmic protease YP_005929751.1 2141055 D 931281 CDS YP_005929752.1 386011475 12520115 2143169..2143342 1 NC_017530.1 DNA-directed DNA polymerase 2143342 12520115 PPUBIRD1_1887 Pseudomonas putida BIRD-1 DNA-directed DNA polymerase YP_005929752.1 2143169 D 931281 CDS YP_005929753.1 386011476 12520116 2143354..2143953 1 NC_017530.1 DNA-directed DNA polymerase 2143953 12520116 PPUBIRD1_1888 Pseudomonas putida BIRD-1 DNA-directed DNA polymerase YP_005929753.1 2143354 D 931281 CDS YP_005929754.1 386011477 12520117 2144066..2145160 1 NC_017530.1 Outer membrane protein precursor 2145160 12520117 PPUBIRD1_1889 Pseudomonas putida BIRD-1 Outer membrane protein precursor YP_005929754.1 2144066 D 931281 CDS YP_005929755.1 386011478 12520118 complement(2145388..2145861) 1 NC_017530.1 hypothetical protein 2145861 12520118 PPUBIRD1_1890 Pseudomonas putida BIRD-1 hypothetical protein YP_005929755.1 2145388 R 931281 CDS YP_005929756.1 386011479 12520119 complement(2145883..2146776) 1 NC_017530.1 Putative pyridine nucleotide-disulfide oxidoreductase 2146776 12520119 PPUBIRD1_1891 Pseudomonas putida BIRD-1 Putative pyridine nucleotide-disulfide oxidoreductase YP_005929756.1 2145883 R 931281 CDS YP_005929757.1 386011480 12520120 2147002..2147538 1 NC_017530.1 TetR family transcriptional regulator 2147538 12520120 PPUBIRD1_1892 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005929757.1 2147002 D 931281 CDS YP_005929758.1 386011481 12520121 2148533..2148700 1 NC_017530.1 hypothetical protein 2148700 12520121 PPUBIRD1_1893 Pseudomonas putida BIRD-1 hypothetical protein YP_005929758.1 2148533 D 931281 CDS YP_005929759.1 386011482 12520122 complement(2148826..2149923) 1 NC_017530.1 hypothetical protein 2149923 12520122 PPUBIRD1_1894 Pseudomonas putida BIRD-1 hypothetical protein YP_005929759.1 2148826 R 931281 CDS YP_005929760.1 386011483 12520123 2150239..2150367 1 NC_017530.1 MerR family transcriptional regulator 2150367 12520123 PPUBIRD1_1895 Pseudomonas putida BIRD-1 MerR family transcriptional regulator YP_005929760.1 2150239 D 931281 CDS YP_005929761.1 386011484 12520124 complement(2151210..2152220) 1 NC_017530.1 Alcohol dehydrogenase 2152220 12520124 PPUBIRD1_1896 Pseudomonas putida BIRD-1 Alcohol dehydrogenase YP_005929761.1 2151210 R 931281 CDS YP_005929762.1 386011485 12520125 complement(2152632..2153501) 1 NC_017530.1 LysR family transcriptional regulator 2153501 12520125 PPUBIRD1_1897 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005929762.1 2152632 R 931281 CDS YP_005929763.1 386011486 12520126 2153650..2154822 1 NC_017530.1 Drug resistance transporter Bcr/CflA subfamily protein 2154822 12520126 PPUBIRD1_1898 Pseudomonas putida BIRD-1 Drug resistance transporter Bcr/CflA subfamily protein YP_005929763.1 2153650 D 931281 CDS YP_005929764.1 386011487 12520127 complement(2155195..2155323) 1 NC_017530.1 LysR family transcriptional regulator 2155323 12520127 PPUBIRD1_1899 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005929764.1 2155195 R 931281 CDS YP_005929765.1 386011488 12520128 complement(2155841..2156254) 1 NC_017530.1 DoxX family protein 2156254 12520128 PPUBIRD1_1901 Pseudomonas putida BIRD-1 DoxX family protein YP_005929765.1 2155841 R 931281 CDS YP_005929766.1 386011489 12520130 2156910..2158286 1 NC_017530.1 phage integrase family site-specific recombinase 2158286 12520130 PPUBIRD1_1902 Pseudomonas putida BIRD-1 phage integrase family site-specific recombinase YP_005929766.1 2156910 D 931281 CDS YP_005929767.1 386011490 12520131 2158926..2160080 1 NC_017530.1 hypothetical protein 2160080 12520131 PPUBIRD1_1904 Pseudomonas putida BIRD-1 hypothetical protein YP_005929767.1 2158926 D 931281 CDS YP_005929768.1 386011491 12520132 complement(2160593..2161471) 1 NC_017530.1 hypothetical protein 2161471 12520132 PPUBIRD1_1905 Pseudomonas putida BIRD-1 hypothetical protein YP_005929768.1 2160593 R 931281 CDS YP_005929769.1 386011492 12520133 2162372..2162782 1 NC_017530.1 hypothetical protein 2162782 12520133 PPUBIRD1_1907 Pseudomonas putida BIRD-1 hypothetical protein YP_005929769.1 2162372 D 931281 CDS YP_005929770.1 386011493 12520134 2163663..2164373 1 NC_017530.1 hypothetical protein 2164373 12520134 PPUBIRD1_1908 Pseudomonas putida BIRD-1 hypothetical protein YP_005929770.1 2163663 D 931281 CDS YP_005929771.1 386011494 12520135 2164439..2164768 1 NC_017530.1 hypothetical protein 2164768 12520135 PPUBIRD1_1909 Pseudomonas putida BIRD-1 hypothetical protein YP_005929771.1 2164439 D 931281 CDS YP_005929772.1 386011495 12520136 2164768..2165427 1 NC_017530.1 hypothetical protein 2165427 12520136 PPUBIRD1_1910 Pseudomonas putida BIRD-1 hypothetical protein YP_005929772.1 2164768 D 931281 CDS YP_005929773.1 386011496 12520137 complement(2166141..2167793) 1 NC_017530.1 hypothetical protein 2167793 12520137 PPUBIRD1_1912 Pseudomonas putida BIRD-1 hypothetical protein YP_005929773.1 2166141 R 931281 CDS YP_005929774.1 386011497 12520138 complement(2167810..2168610) 1 NC_017530.1 hypothetical protein 2168610 12520138 PPUBIRD1_1913 Pseudomonas putida BIRD-1 hypothetical protein YP_005929774.1 2167810 R 931281 CDS YP_005929775.1 386011498 12520139 complement(2168585..2170099) 1 NC_017530.1 hypothetical protein 2170099 12520139 PPUBIRD1_1914 Pseudomonas putida BIRD-1 hypothetical protein YP_005929775.1 2168585 R 931281 CDS YP_005929776.1 386011499 12520140 complement(2170096..2170989) 1 NC_017530.1 hypothetical protein 2170989 12520140 PPUBIRD1_1915 Pseudomonas putida BIRD-1 hypothetical protein YP_005929776.1 2170096 R 931281 CDS YP_005929777.1 386011500 12520141 complement(2171942..2174473) 1 NC_017530.1 Lambda family phage tail tape measure protein 2174473 12520141 PPUBIRD1_1917 Pseudomonas putida BIRD-1 Lambda family phage tail tape measure protein YP_005929777.1 2171942 R 931281 CDS YP_005929778.1 386011501 12520142 complement(2179350..2179715) 1 NC_017530.1 Protein of unknown function DUF1320; hypothetical protein 2179715 12520142 PPUBIRD1_1922 Pseudomonas putida BIRD-1 hypothetical protein YP_005929778.1 2179350 R 931281 CDS YP_005929779.1 386011502 12520143 complement(2179856..2180809) 1 NC_017530.1 Phage head morphogenesis protein, SPP1 gp7 family 2180809 12520143 PPUBIRD1_1923 Pseudomonas putida BIRD-1 Phage head morphogenesis protein, SPP1 gp7 family YP_005929779.1 2179856 R 931281 CDS YP_005929780.1 386011503 12520144 complement(2182433..2182744) 1 NC_017530.1 hypothetical protein 2182744 12520144 PPUBIRD1_1924 Pseudomonas putida BIRD-1 hypothetical protein YP_005929780.1 2182433 R 931281 CDS YP_005929781.1 386011504 12520145 complement(2182806..2184146) 1 NC_017530.1 hypothetical protein 2184146 12520145 PPUBIRD1_1925 Pseudomonas putida BIRD-1 hypothetical protein YP_005929781.1 2182806 R 931281 CDS YP_005929782.1 386011505 12520146 complement(2184196..2185980) 1 NC_017530.1 Truncated biofilm-associated surface protein 2185980 12520146 PPUBIRD1_1926 Pseudomonas putida BIRD-1 Truncated biofilm-associated surface protein YP_005929782.1 2184196 R 931281 CDS YP_005929783.1 386011506 12520147 complement(2186387..2187184) 1 NC_017530.1 hypothetical protein 2187184 12520147 PPUBIRD1_1927 Pseudomonas putida BIRD-1 hypothetical protein YP_005929783.1 2186387 R 931281 CDS YP_005929784.1 386011507 12520148 complement(2187675..2188469) 1 NC_017530.1 hypothetical protein 2188469 12520148 PPUBIRD1_1928 Pseudomonas putida BIRD-1 hypothetical protein YP_005929784.1 2187675 R 931281 CDS YP_005929785.1 386011508 12520149 complement(2189410..2190312) 1 NC_017530.1 hypothetical protein 2190312 12520149 PPUBIRD1_1929 Pseudomonas putida BIRD-1 hypothetical protein YP_005929785.1 2189410 R 931281 CDS YP_005929786.1 386011509 12520150 2190630..2190962 1 NC_017530.1 hypothetical protein 2190962 12520150 PPUBIRD1_1930 Pseudomonas putida BIRD-1 hypothetical protein YP_005929786.1 2190630 D 931281 CDS YP_005929787.1 386011510 12520151 complement(2193983..2195221) 1 NC_017530.1 hypothetical protein 2195221 12520151 PPUBIRD1_1933 Pseudomonas putida BIRD-1 hypothetical protein YP_005929787.1 2193983 R 931281 CDS YP_005929788.1 386011511 12520152 complement(2195305..2196012) 1 NC_017530.1 hypothetical protein 2196012 12520152 PPUBIRD1_1934 Pseudomonas putida BIRD-1 hypothetical protein YP_005929788.1 2195305 R 931281 CDS YP_005929789.1 386011512 12520153 complement(2196098..2196469) 1 NC_017530.1 hypothetical protein 2196469 12520153 PPUBIRD1_1935 Pseudomonas putida BIRD-1 hypothetical protein YP_005929789.1 2196098 R 931281 CDS YP_005929790.1 386011513 12520154 2196554..2197561 1 NC_017530.1 hypothetical protein 2197561 12520154 PPUBIRD1_1936 Pseudomonas putida BIRD-1 hypothetical protein YP_005929790.1 2196554 D 931281 CDS YP_005929791.1 386011514 12520155 complement(2197595..2198605) 1 NC_017530.1 hypothetical protein 2198605 12520155 PPUBIRD1_1937 Pseudomonas putida BIRD-1 hypothetical protein YP_005929791.1 2197595 R 931281 CDS YP_005929792.1 386011515 12520156 complement(2198962..2200497) 1 NC_017530.1 hypothetical protein 2200497 12520156 PPUBIRD1_1938 Pseudomonas putida BIRD-1 hypothetical protein YP_005929792.1 2198962 R 931281 CDS YP_005929793.1 386011516 12520157 complement(2200535..2200996) 1 NC_017530.1 hypothetical protein 2200996 12520157 PPUBIRD1_1939 Pseudomonas putida BIRD-1 hypothetical protein YP_005929793.1 2200535 R 931281 CDS YP_005929794.1 386011517 12520158 complement(2203137..2205212) 1 NC_017530.1 Replication protein RepA 2205212 12520158 PPUBIRD1_1941 Pseudomonas putida BIRD-1 Replication protein RepA YP_005929794.1 2203137 R 931281 CDS YP_005929795.1 386011518 12520159 2205812..2207110 1 NC_017530.1 hypothetical protein 2207110 12520159 PPUBIRD1_1942 Pseudomonas putida BIRD-1 hypothetical protein YP_005929795.1 2205812 D 931281 CDS YP_005929796.1 386011519 12520160 2207427..2207615 1 NC_017530.1 hypothetical protein 2207615 12520160 PPUBIRD1_1943 Pseudomonas putida BIRD-1 hypothetical protein YP_005929796.1 2207427 D 931281 CDS YP_005929797.1 386011520 12520161 2208246..2208521 1 NC_017530.1 hypothetical protein 2208521 12520161 PPUBIRD1_1944 Pseudomonas putida BIRD-1 hypothetical protein YP_005929797.1 2208246 D 931281 CDS YP_005929798.1 386011521 12520162 2208606..2209766 1 NC_017530.1 PAS/PAC sensor signal transduction histidine kinase 2209766 12520162 PPUBIRD1_1945 Pseudomonas putida BIRD-1 PAS/PAC sensor signal transduction histidine kinase YP_005929798.1 2208606 D 931281 CDS YP_005929799.1 386011522 12520163 2209772..2211217 1 NC_017530.1 Non-specific serine/threonine protein kinase 2211217 12520163 PPUBIRD1_1946 Pseudomonas putida BIRD-1 Non-specific serine/threonine protein kinase YP_005929799.1 2209772 D 931281 CDS YP_005929800.1 386011523 12520164 2211229..2211582 1 NC_017530.1 Response regulator receiver protein 2211582 12520164 PPUBIRD1_1947 Pseudomonas putida BIRD-1 Response regulator receiver protein YP_005929800.1 2211229 D 931281 CDS YP_005929801.1 386011524 12520165 complement(2211620..2211817) 1 NC_017530.1 CsrA-like carbon storage regulator 2211817 12520165 PPUBIRD1_1948 Pseudomonas putida BIRD-1 CsrA-like carbon storage regulator YP_005929801.1 2211620 R 931281 CDS YP_005929802.1 386011525 12520166 complement(2212071..2213093) 1 NC_017530.1 DNA topoisomerase 2213093 12520166 PPUBIRD1_1949 Pseudomonas putida BIRD-1 DNA topoisomerase YP_005929802.1 2212071 R 931281 CDS YP_005929803.1 386011526 12520167 complement(2213151..2214242) 1 NC_017530.1 Molybdenum import ATP-binding protein modC; protein ModC 2214242 modC 12520167 modC Pseudomonas putida BIRD-1 protein ModC YP_005929803.1 2213151 R 931281 CDS YP_005929804.1 386011527 12520168 complement(2214244..2214924) 1 NC_017530.1 molybdate ABC transporter inner membrane protein; ModB protein 2214924 modB 12520168 modB Pseudomonas putida BIRD-1 ModB protein YP_005929804.1 2214244 R 931281 CDS YP_005929805.1 386011528 12520169 complement(2214924..2215682) 1 NC_017530.1 molybdenum ABC transporter periplasmic molybdate-binding protein; ModA 2215682 modA 12520169 modA Pseudomonas putida BIRD-1 ModA YP_005929805.1 2214924 R 931281 CDS YP_005929806.1 386011529 12520170 complement(2215765..2216850) 1 NC_017530.1 hypothetical protein 2216850 12520170 PPUBIRD1_1953 Pseudomonas putida BIRD-1 hypothetical protein YP_005929806.1 2215765 R 931281 CDS YP_005929807.1 386011530 12520171 complement(2216902..2217072) 1 NC_017530.1 hypothetical protein 2217072 12520171 PPUBIRD1_1954 Pseudomonas putida BIRD-1 hypothetical protein YP_005929807.1 2216902 R 931281 CDS YP_005929808.1 386011531 12520172 complement(2217080..2217382) 1 NC_017530.1 hypothetical protein 2217382 12520172 PPUBIRD1_1955 Pseudomonas putida BIRD-1 hypothetical protein YP_005929808.1 2217080 R 931281 CDS YP_005929809.1 386011532 12520173 2217551..2217901 1 NC_017530.1 hypothetical protein 2217901 12520173 PPUBIRD1_1956 Pseudomonas putida BIRD-1 hypothetical protein YP_005929809.1 2217551 D 931281 CDS YP_005929810.1 386011533 12520174 2217979..2218629 1 NC_017530.1 Cytochrome c-type protein 2218629 12520174 PPUBIRD1_1957 Pseudomonas putida BIRD-1 Cytochrome c-type protein YP_005929810.1 2217979 D 931281 CDS YP_005929811.1 386011534 12520175 2218626..2219540 1 NC_017530.1 Cytochrome c, class I 2219540 12520175 PPUBIRD1_1958 Pseudomonas putida BIRD-1 Cytochrome c, class I YP_005929811.1 2218626 D 931281 CDS YP_005929812.1 386011535 12520176 2219777..2220616 1 NC_017530.1 UTP-glucose-1-phosphate uridylyltransferase; GalU 2220616 galU 12520176 galU Pseudomonas putida BIRD-1 GalU YP_005929812.1 2219777 D 931281 CDS YP_005929813.1 386011536 12520177 2220714..2222069 1 NC_017530.1 Glutathione reductase 2222069 12520177 PPUBIRD1_1960 Pseudomonas putida BIRD-1 Glutathione reductase YP_005929813.1 2220714 D 931281 CDS YP_005929814.1 386011537 12520178 complement(2222200..2223507) 1 NC_017530.1 OmpA/MotB domain-containing protein 2223507 12520178 PPUBIRD1_1961 Pseudomonas putida BIRD-1 OmpA/MotB domain-containing protein YP_005929814.1 2222200 R 931281 CDS YP_005929815.1 386011538 12520179 complement(2223663..2224811) 1 NC_017530.1 Polyamine ABC transporter ATP-binding protein 2224811 12520179 PPUBIRD1_1962 Pseudomonas putida BIRD-1 Polyamine ABC transporter ATP-binding protein YP_005929815.1 2223663 R 931281 CDS YP_005929816.1 386011539 12520180 complement(2224829..2225635) 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 2225635 12520180 PPUBIRD1_1963 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005929816.1 2224829 R 931281 CDS YP_005929817.1 386011540 12520181 complement(2225642..2226559) 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 2226559 12520181 PPUBIRD1_1964 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005929817.1 2225642 R 931281 CDS YP_005929818.1 386011541 12520182 complement(2226556..2227581) 1 NC_017530.1 Extracellular solute-binding protein 2227581 12520182 PPUBIRD1_1965 Pseudomonas putida BIRD-1 Extracellular solute-binding protein YP_005929818.1 2226556 R 931281 CDS YP_005929819.1 386011542 12520183 complement(2227911..2229032) 1 NC_017530.1 Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein 2229032 12520183 PPUBIRD1_1966 Pseudomonas putida BIRD-1 Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein YP_005929819.1 2227911 R 931281 CDS YP_005929820.1 386011543 12520184 2229111..2229404 1 NC_017530.1 hypothetical protein 2229404 12520184 PPUBIRD1_1967 Pseudomonas putida BIRD-1 hypothetical protein YP_005929820.1 2229111 D 931281 CDS YP_005929821.1 386011544 12520185 complement(2229514..2230533) 1 NC_017530.1 Alpha/beta hydrolase fold-3 domain-containing protein 2230533 12520185 PPUBIRD1_1968 Pseudomonas putida BIRD-1 Alpha/beta hydrolase fold-3 domain-containing protein YP_005929821.1 2229514 R 931281 CDS YP_005929822.1 386011545 12520186 2230680..2231564 1 NC_017530.1 LysR family transcriptional regulator 2231564 12520186 PPUBIRD1_1969 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005929822.1 2230680 D 931281 CDS YP_005929823.1 386011546 12520187 2231591..2231992 1 NC_017530.1 hypothetical protein 2231992 12520187 PPUBIRD1_1970 Pseudomonas putida BIRD-1 hypothetical protein YP_005929823.1 2231591 D 931281 CDS YP_005929824.1 386011547 12520188 2232127..2232348 1 NC_017530.1 MbtH domain-containing protein 2232348 12520188 PPUBIRD1_1971 Pseudomonas putida BIRD-1 MbtH domain-containing protein YP_005929824.1 2232127 D 931281 CDS YP_005929825.1 386011548 12520189 2232345..2232476 1 NC_017530.1 Thioesterase 2232476 12520189 PPUBIRD1_1972 Pseudomonas putida BIRD-1 Thioesterase YP_005929825.1 2232345 D 931281 CDS YP_005929826.1 386011549 12520190 2232473..2233063 1 NC_017530.1 Thioesterase 2233063 12520190 PPUBIRD1_1973 Pseudomonas putida BIRD-1 Thioesterase YP_005929826.1 2232473 D 931281 CDS YP_005929827.1 386011550 12520191 2233121..2233672 1 NC_017530.1 Isochorismatase superfamily hydrolase 2233672 12520191 PPUBIRD1_1974 Pseudomonas putida BIRD-1 Isochorismatase superfamily hydrolase YP_005929827.1 2233121 D 931281 CDS YP_005929828.1 386011551 12520192 2233699..2234751 1 NC_017530.1 hypothetical protein 2234751 12520192 PPUBIRD1_1975 Pseudomonas putida BIRD-1 hypothetical protein YP_005929828.1 2233699 D 931281 CDS YP_005929829.1 386011552 12520193 complement(2234748..2234894) 1 NC_017530.1 hypothetical protein 2234894 12520193 PPUBIRD1_1976 Pseudomonas putida BIRD-1 hypothetical protein YP_005929829.1 2234748 R 931281 CDS YP_005929830.1 386011553 12520194 complement(2234918..2235781) 1 NC_017530.1 hypothetical protein 2235781 12520194 PPUBIRD1_1977 Pseudomonas putida BIRD-1 hypothetical protein YP_005929830.1 2234918 R 931281 CDS YP_005929831.1 386011554 12520195 complement(2235778..2236677) 1 NC_017530.1 hypothetical protein 2236677 12520195 PPUBIRD1_1978 Pseudomonas putida BIRD-1 hypothetical protein YP_005929831.1 2235778 R 931281 CDS YP_005929832.1 386011555 12520196 complement(2236677..2237423) 1 NC_017530.1 ABC transporter 2237423 12520196 PPUBIRD1_1979 Pseudomonas putida BIRD-1 ABC transporter YP_005929832.1 2236677 R 931281 CDS YP_005929833.1 386011556 12520197 complement(2237420..2238322) 1 NC_017530.1 Periplasmic solute binding protein 2238322 12520197 PPUBIRD1_1980 Pseudomonas putida BIRD-1 Periplasmic solute binding protein YP_005929833.1 2237420 R 931281 CDS YP_005929834.1 386011557 12520198 complement(2238339..2238908) 1 NC_017530.1 hypothetical protein 2238908 12520198 PPUBIRD1_1981 Pseudomonas putida BIRD-1 hypothetical protein YP_005929834.1 2238339 R 931281 CDS YP_005929835.1 386011558 12520199 complement(2238905..2239225) 1 NC_017530.1 hypothetical protein 2239225 12520199 PPUBIRD1_1982 Pseudomonas putida BIRD-1 hypothetical protein YP_005929835.1 2238905 R 931281 CDS YP_005929836.1 386011559 12520200 complement(2239222..2239755) 1 NC_017530.1 hypothetical protein 2239755 12520200 PPUBIRD1_1983 Pseudomonas putida BIRD-1 hypothetical protein YP_005929836.1 2239222 R 931281 CDS YP_005929837.1 386011560 12520201 complement(2239752..2240945) 1 NC_017530.1 hypothetical protein 2240945 12520201 PPUBIRD1_1984 Pseudomonas putida BIRD-1 hypothetical protein YP_005929837.1 2239752 R 931281 CDS YP_005929838.1 386011561 12520202 complement(2241121..2242455) 1 NC_017530.1 L-ornithine N5-oxygenase 2242455 12520202 PPUBIRD1_1985 Pseudomonas putida BIRD-1 L-ornithine N5-oxygenase YP_005929838.1 2241121 R 931281 CDS YP_005929839.1 386011562 12520203 2242630..2243076 1 NC_017530.1 hypothetical protein 2243076 12520203 PPUBIRD1_1986 Pseudomonas putida BIRD-1 hypothetical protein YP_005929839.1 2242630 D 931281 CDS YP_005929840.1 386011563 12520204 complement(2243561..2244499) 1 NC_017530.1 D-alanyl-D-alanine endopeptidase; PbpG 2244499 pbpG 12520204 pbpG Pseudomonas putida BIRD-1 PbpG YP_005929840.1 2243561 R 931281 CDS YP_005929841.1 386011564 12520205 complement(2244753..2245427) 1 NC_017530.1 alginate lyase 2245427 12520205 PPUBIRD1_1988 Pseudomonas putida BIRD-1 alginate lyase YP_005929841.1 2244753 R 931281 CDS YP_005929842.1 386011565 12520206 2245664..2245987 1 NC_017530.1 hypothetical protein 2245987 12520206 PPUBIRD1_1989 Pseudomonas putida BIRD-1 hypothetical protein YP_005929842.1 2245664 D 931281 CDS YP_005929843.1 386011566 12520207 complement(2246026..2246895) 1 NC_017530.1 Putative phage repressor 2246895 12520207 PPUBIRD1_1990 Pseudomonas putida BIRD-1 Putative phage repressor YP_005929843.1 2246026 R 931281 CDS YP_005929844.1 386011567 12520208 2247015..2247329 1 NC_017530.1 hypothetical protein 2247329 12520208 PPUBIRD1_1991 Pseudomonas putida BIRD-1 hypothetical protein YP_005929844.1 2247015 D 931281 CDS YP_005929845.1 386011568 12520209 complement(2247420..2247602) 1 NC_017530.1 hypothetical protein 2247602 12520209 PPUBIRD1_1992 Pseudomonas putida BIRD-1 hypothetical protein YP_005929845.1 2247420 R 931281 CDS YP_005929846.1 386011569 12520210 complement(2247697..2248047) 1 NC_017530.1 hypothetical protein 2248047 12520210 PPUBIRD1_1993 Pseudomonas putida BIRD-1 hypothetical protein YP_005929846.1 2247697 R 931281 CDS YP_005929847.1 386011570 12520211 2248209..2249030 1 NC_017530.1 shikimate 5-dehydrogenase 2249030 12520211 PPUBIRD1_1994 Pseudomonas putida BIRD-1 shikimate 5-dehydrogenase YP_005929847.1 2248209 D 931281 CDS YP_005929848.1 386011571 12520212 complement(2249087..2249278) 1 NC_017530.1 hypothetical protein 2249278 12520212 PPUBIRD1_1995 Pseudomonas putida BIRD-1 hypothetical protein YP_005929848.1 2249087 R 931281 CDS YP_005929849.1 386011572 12520213 complement(2249427..2249954) 1 NC_017530.1 Lactoylglutathione lyase 2249954 12520213 PPUBIRD1_1996 Pseudomonas putida BIRD-1 Lactoylglutathione lyase YP_005929849.1 2249427 R 931281 CDS YP_005929850.1 386011573 12520214 complement(2250179..2250538) 1 NC_017530.1 hypothetical protein 2250538 12520214 PPUBIRD1_1997 Pseudomonas putida BIRD-1 hypothetical protein YP_005929850.1 2250179 R 931281 CDS YP_005929851.1 386011574 12520215 2250900..2252189 1 NC_017530.1 Outer membrane porin 2252189 12520215 PPUBIRD1_1998 Pseudomonas putida BIRD-1 Outer membrane porin YP_005929851.1 2250900 D 931281 CDS YP_005929852.1 386011575 12520216 2252257..2253006 1 NC_017530.1 Precorrin 6A synthase 2253006 12520216 PPUBIRD1_1999 Pseudomonas putida BIRD-1 Precorrin 6A synthase YP_005929852.1 2252257 D 931281 CDS YP_005929853.1 386011576 12520217 complement(2253076..2253426) 1 NC_017530.1 Response regulator receiver protein 2253426 12520217 PPUBIRD1_2000 Pseudomonas putida BIRD-1 Response regulator receiver protein YP_005929853.1 2253076 R 931281 CDS YP_005929854.1 386011577 12520218 2253693..2257142 1 NC_017530.1 Multi-sensor hybrid histidine kinase 2257142 12520218 PPUBIRD1_2001 Pseudomonas putida BIRD-1 Multi-sensor hybrid histidine kinase YP_005929854.1 2253693 D 931281 CDS YP_005929855.1 386011578 12520219 2257139..2257960 1 NC_017530.1 chemotaxis protein CheR 2257960 12520219 PPUBIRD1_2002 Pseudomonas putida BIRD-1 chemotaxis protein CheR YP_005929855.1 2257139 D 931281 CDS YP_005929856.1 386011579 12520220 2257957..2258532 1 NC_017530.1 CheB methylesterase 2258532 12520220 PPUBIRD1_2003 Pseudomonas putida BIRD-1 CheB methylesterase YP_005929856.1 2257957 D 931281 CDS YP_005929857.1 386011580 12520221 2258526..2259752 1 NC_017530.1 Response regulator receiver sensor signal transduction histidine kinase 2259752 12520221 PPUBIRD1_2004 Pseudomonas putida BIRD-1 Response regulator receiver sensor signal transduction histidine kinase YP_005929857.1 2258526 D 931281 CDS YP_005929858.1 386011581 12520222 2259797..2260174 1 NC_017530.1 Response regulator receiver protein 2260174 12520222 PPUBIRD1_2005 Pseudomonas putida BIRD-1 Response regulator receiver protein YP_005929858.1 2259797 D 931281 CDS YP_005929859.1 386011582 12520223 complement(2260223..2260804) 1 NC_017530.1 TetR family transcriptional regulator 2260804 12520223 PPUBIRD1_2006 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005929859.1 2260223 R 931281 CDS YP_005929860.1 386011583 12520224 complement(2260817..2261665) 1 NC_017530.1 3-hydroxybutyryl-CoA dehydrogenase 2261665 12520224 PPUBIRD1_2007 Pseudomonas putida BIRD-1 3-hydroxybutyryl-CoA dehydrogenase YP_005929860.1 2260817 R 931281 CDS YP_005929861.1 386011584 12520225 complement(2261679..2262863) 1 NC_017530.1 Beta-ketothiolase 2262863 12520225 PPUBIRD1_2008 Pseudomonas putida BIRD-1 Beta-ketothiolase YP_005929861.1 2261679 R 931281 CDS YP_005929862.1 386011585 12520226 2263032..2264120 1 NC_017530.1 Helix-turn-helix domain-containing protein 2264120 12520226 PPUBIRD1_2009 Pseudomonas putida BIRD-1 Helix-turn-helix domain-containing protein YP_005929862.1 2263032 D 931281 CDS YP_005929863.1 386011586 12520227 complement(2264400..2264837) 1 NC_017530.1 Alkylhydroperoxidase 2264837 12520227 PPUBIRD1_2010 Pseudomonas putida BIRD-1 Alkylhydroperoxidase YP_005929863.1 2264400 R 931281 CDS YP_005929864.1 386011587 12520228 2265038..2266234 1 NC_017530.1 Major facilitator transporter 2266234 12520228 PPUBIRD1_2011 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005929864.1 2265038 D 931281 CDS YP_005929865.1 386011588 12520229 complement(2266227..2267660) 1 NC_017530.1 GntR family transcriptional regulator 2267660 12520229 PPUBIRD1_2012 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005929865.1 2266227 R 931281 CDS YP_005929866.1 386011589 12520230 complement(2267752..2268090) 1 NC_017530.1 hypothetical protein 2268090 12520230 PPUBIRD1_2013 Pseudomonas putida BIRD-1 hypothetical protein YP_005929866.1 2267752 R 931281 CDS YP_005929867.1 386011590 12520231 complement(2268230..2268628) 1 NC_017530.1 GlcG 2268628 glcG 12520231 glcG Pseudomonas putida BIRD-1 GlcG YP_005929867.1 2268230 R 931281 CDS YP_005929868.1 386011591 12520232 complement(2268621..2269856) 1 NC_017530.1 glycolate oxidase iron-sulfur subunit; GlcF 2269856 glcF 12520232 glcF Pseudomonas putida BIRD-1 GlcF YP_005929868.1 2268621 R 931281 CDS YP_005929869.1 386011592 12520233 complement(2269866..2270918) 1 NC_017530.1 glycolate oxidase FAD binding subunit; GlcE 2270918 glcE 12520233 glcE Pseudomonas putida BIRD-1 GlcE YP_005929869.1 2269866 R 931281 CDS YP_005929870.1 386011593 12520234 complement(2270918..2272408) 1 NC_017530.1 Glycolate oxidase subunit glcD 2272408 12520234 PPUBIRD1_2017 Pseudomonas putida BIRD-1 Glycolate oxidase subunit glcD YP_005929870.1 2270918 R 931281 CDS YP_005929871.1 386011594 12520235 2272613..2273377 1 NC_017530.1 DNA-binding transcriptional regulator GlcC; GlcC 2273377 glcC 12520235 glcC Pseudomonas putida BIRD-1 GlcC YP_005929871.1 2272613 D 931281 CDS YP_005929872.1 386011595 12520236 complement(2273438..2273755) 1 NC_017530.1 hypothetical protein 2273755 12520236 PPUBIRD1_2019 Pseudomonas putida BIRD-1 hypothetical protein YP_005929872.1 2273438 R 931281 CDS YP_005929873.1 386011596 12520237 2273971..2274663 1 NC_017530.1 glutathione S-transferase 2274663 12520237 PPUBIRD1_2020 Pseudomonas putida BIRD-1 glutathione S-transferase YP_005929873.1 2273971 D 931281 CDS YP_005929874.1 386011597 12520238 complement(2274706..2276601) 1 NC_017530.1 penicillin-binding protein 2; protein MrdA 2276601 mrdA 12520238 mrdA Pseudomonas putida BIRD-1 protein MrdA YP_005929874.1 2274706 R 931281 CDS YP_005929875.1 386011598 12520239 2277162..2278502 1 NC_017530.1 Major facilitator transporter 2278502 12520239 PPUBIRD1_2022 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005929875.1 2277162 D 931281 CDS YP_005929876.1 386011599 12520240 2278605..2279858 1 NC_017530.1 Outer membrane porin 2279858 12520240 PPUBIRD1_2023 Pseudomonas putida BIRD-1 Outer membrane porin YP_005929876.1 2278605 D 931281 CDS YP_005929877.1 386011600 12520241 2280266..2280979 1 NC_017530.1 GntR family transcriptional regulator 2280979 12520241 PPUBIRD1_2024 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005929877.1 2280266 D 931281 CDS YP_005929878.1 386011601 12520242 complement(2280986..2281936) 1 NC_017530.1 Ferredoxin 2281936 12520242 PPUBIRD1_2025 Pseudomonas putida BIRD-1 Ferredoxin YP_005929878.1 2280986 R 931281 CDS YP_005929879.1 386011602 12520243 complement(2281949..2283016) 1 NC_017530.1 Rieske (2Fe-2S) domain-containing protein 2283016 12520243 PPUBIRD1_2026 Pseudomonas putida BIRD-1 Rieske (2Fe-2S) domain-containing protein YP_005929879.1 2281949 R 931281 CDS YP_005929880.1 386011603 12520244 2283357..2283962 1 NC_017530.1 ABC transporter ATP-binding protein 2283962 12520244 PPUBIRD1_2027 Pseudomonas putida BIRD-1 ABC transporter ATP-binding protein YP_005929880.1 2283357 D 931281 CDS YP_005929881.1 386011604 12520245 2283962..2286421 1 NC_017530.1 hypothetical protein 2286421 12520245 PPUBIRD1_2028 Pseudomonas putida BIRD-1 hypothetical protein YP_005929881.1 2283962 D 931281 CDS YP_005929882.1 386011605 12520246 2286411..2287466 1 NC_017530.1 Secreted hydrolase-like protein 2287466 12520246 PPUBIRD1_2029 Pseudomonas putida BIRD-1 Secreted hydrolase-like protein YP_005929882.1 2286411 D 931281 CDS YP_005929883.1 386011606 12520247 complement(2287520..2288266) 1 NC_017530.1 Enoyl-CoA hydratase/isomerase 2288266 12520247 PPUBIRD1_2030 Pseudomonas putida BIRD-1 Enoyl-CoA hydratase/isomerase YP_005929883.1 2287520 R 931281 CDS YP_005929884.1 386011607 12520248 2288383..2289027 1 NC_017530.1 TetR family transcriptional regulator 2289027 12520248 PPUBIRD1_2031 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005929884.1 2288383 D 931281 CDS YP_005929885.1 386011608 12520249 2289102..2289818 1 NC_017530.1 Winged helix family two component transcriptional regulator 2289818 12520249 PPUBIRD1_2032 Pseudomonas putida BIRD-1 Winged helix family two component transcriptional regulator YP_005929885.1 2289102 D 931281 CDS YP_005929886.1 386011609 12520250 2289815..2290597 1 NC_017530.1 Periplasmic amino acid-binding protein-related protein 2290597 12520250 PPUBIRD1_2033 Pseudomonas putida BIRD-1 Periplasmic amino acid-binding protein-related protein YP_005929886.1 2289815 D 931281 CDS YP_005929887.1 386011610 12520251 2290594..2292846 1 NC_017530.1 Multi-sensor hybrid histidine kinase 2292846 12520251 PPUBIRD1_2034 Pseudomonas putida BIRD-1 Multi-sensor hybrid histidine kinase YP_005929887.1 2290594 D 931281 CDS YP_005929888.1 386011611 12520252 2293043..2294449 1 NC_017530.1 amino acid transporter 2294449 12520252 PPUBIRD1_2035 Pseudomonas putida BIRD-1 amino acid transporter YP_005929888.1 2293043 D 931281 CDS YP_005929889.1 386011612 12520253 2294689..2295483 1 NC_017530.1 Enoyl-CoA hydratase/isomerase 2295483 12520253 PPUBIRD1_2036 Pseudomonas putida BIRD-1 Enoyl-CoA hydratase/isomerase YP_005929889.1 2294689 D 931281 CDS YP_005929890.1 386011613 12520254 2295517..2296677 1 NC_017530.1 Acyl-CoA dehydrogenase domain-containing protein 2296677 12520254 PPUBIRD1_2037 Pseudomonas putida BIRD-1 Acyl-CoA dehydrogenase domain-containing protein YP_005929890.1 2295517 D 931281 CDS YP_005929891.1 386011614 12520255 2296695..2298812 1 NC_017530.1 Acyl-CoA synthetase, putative 2298812 12520255 PPUBIRD1_2038 Pseudomonas putida BIRD-1 Acyl-CoA synthetase, putative YP_005929891.1 2296695 D 931281 CDS YP_005929892.1 386011615 12520256 2298805..2300412 1 NC_017530.1 hypothetical protein 2300412 12520256 PPUBIRD1_2039 Pseudomonas putida BIRD-1 hypothetical protein YP_005929892.1 2298805 D 931281 CDS YP_005929893.1 386011616 12520257 2300534..2301676 1 NC_017530.1 alanine racemase; hypothetical protein 2301676 alr 12520257 alr Pseudomonas putida BIRD-1 hypothetical protein YP_005929893.1 2300534 D 931281 CDS YP_005929894.1 386011617 12520258 2301701..2302891 1 NC_017530.1 aspartate aminotransferase; AspC 2302891 aspC 12520258 aspC Pseudomonas putida BIRD-1 AspC YP_005929894.1 2301701 D 931281 CDS YP_005929895.1 386011618 12520259 2302990..2303691 1 NC_017530.1 Ribosyldihydronicotinamide dehydrogenase (quinone) 2303691 12520259 PPUBIRD1_2042 Pseudomonas putida BIRD-1 Ribosyldihydronicotinamide dehydrogenase (quinone) YP_005929895.1 2302990 D 931281 CDS YP_005929896.1 386011619 12520260 2303947..2305050 1 NC_017530.1 Periplasmic polyamine-binding protein, putative 2305050 12520260 PPUBIRD1_2043 Pseudomonas putida BIRD-1 Periplasmic polyamine-binding protein, putative YP_005929896.1 2303947 D 931281 CDS YP_005929897.1 386011620 12520261 2305085..2306497 1 NC_017530.1 hypothetical protein 2306497 12520261 PPUBIRD1_2044 Pseudomonas putida BIRD-1 hypothetical protein YP_005929897.1 2305085 D 931281 CDS YP_005929898.1 386011621 12520262 2306494..2307399 1 NC_017530.1 LuxR family transcriptional regulator 2307399 12520262 PPUBIRD1_2045 Pseudomonas putida BIRD-1 LuxR family transcriptional regulator YP_005929898.1 2306494 D 931281 CDS YP_005929899.1 386011622 12520263 2308259..2309683 1 NC_017530.1 hypothetical protein 2309683 12520263 PPUBIRD1_2047 Pseudomonas putida BIRD-1 hypothetical protein YP_005929899.1 2308259 D 931281 CDS YP_005929900.1 386011623 12520264 complement(2310583..2314359) 1 NC_017530.1 hypothetical protein 2314359 12520264 PPUBIRD1_2048 Pseudomonas putida BIRD-1 hypothetical protein YP_005929900.1 2310583 R 931281 CDS YP_005929901.1 386011624 12520265 complement(2314432..2314755) 1 NC_017530.1 hypothetical protein 2314755 12520265 PPUBIRD1_2049 Pseudomonas putida BIRD-1 hypothetical protein YP_005929901.1 2314432 R 931281 CDS YP_005929902.1 386011625 12520266 complement(2314982..2315854) 1 NC_017530.1 LysR family transcriptional regulator; CatR 2315854 catR 12520266 catR Pseudomonas putida BIRD-1 CatR YP_005929902.1 2314982 R 931281 CDS YP_005929903.1 386011626 12520267 2315990..2317111 1 NC_017530.1 Muconate cycloisomerase 1 2317111 12520267 PPUBIRD1_2051 Pseudomonas putida BIRD-1 Muconate cycloisomerase 1 YP_005929903.1 2315990 D 931281 CDS YP_005929904.1 386011627 12520268 2317133..2317423 1 NC_017530.1 Muconolactone Delta-isomerase 2317423 12520268 PPUBIRD1_2052 Pseudomonas putida BIRD-1 Muconolactone Delta-isomerase YP_005929904.1 2317133 D 931281 CDS YP_005929905.1 386011628 12520269 2317467..2318402 1 NC_017530.1 catechol 1,2-dioxygenase; CatA 2318402 catA 12520269 catA Pseudomonas putida BIRD-1 CatA YP_005929905.1 2317467 D 931281 CDS YP_005929906.1 386011629 12520270 2318518..2319012 1 NC_017530.1 hypothetical protein 2319012 12520270 PPUBIRD1_2054 Pseudomonas putida BIRD-1 hypothetical protein YP_005929906.1 2318518 D 931281 CDS YP_005929907.1 386011630 12520271 2319175..2321274 1 NC_017530.1 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 2321274 12520271 PPUBIRD1_2055 Pseudomonas putida BIRD-1 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) YP_005929907.1 2319175 D 931281 CDS YP_005929908.1 386011631 12520272 complement(2321289..2322113) 1 NC_017530.1 Aldo/keto reductase 2322113 12520272 PPUBIRD1_2056 Pseudomonas putida BIRD-1 Aldo/keto reductase YP_005929908.1 2321289 R 931281 CDS YP_005929909.1 386011632 12520273 2322358..2323236 1 NC_017530.1 hypothetical protein 2323236 12520273 PPUBIRD1_2057 Pseudomonas putida BIRD-1 hypothetical protein YP_005929909.1 2322358 D 931281 CDS YP_005929910.1 386011633 12520274 complement(2323296..2324201) 1 NC_017530.1 LysR family transcriptional regulator 2324201 12520274 PPUBIRD1_2058 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005929910.1 2323296 R 931281 CDS YP_005929911.1 386011634 12520275 2324588..2326843 1 NC_017530.1 bifunctional; catalase 2326843 12520275 PPUBIRD1_2060 Pseudomonas putida BIRD-1 catalase YP_005929911.1 2324588 D 931281 CDS YP_005929912.1 386011635 12520276 2327001..2328212 1 NC_017530.1 Creatinase 2328212 12520276 PPUBIRD1_2061 Pseudomonas putida BIRD-1 Creatinase YP_005929912.1 2327001 D 931281 CDS YP_005929913.1 386011636 12520277 2328375..2329709 1 NC_017530.1 Major facilitator transporter 2329709 12520277 PPUBIRD1_2062 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005929913.1 2328375 D 931281 CDS YP_005929914.1 386011637 12520278 complement(2330004..2330846) 1 NC_017530.1 AraC family transcriptional regulator 2330846 12520278 PPUBIRD1_2063 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005929914.1 2330004 R 931281 CDS YP_005929915.1 386011638 12520279 2331027..2332355 1 NC_017530.1 phosphatidylserine synthase; PssA 2332355 pssA 12520279 pssA Pseudomonas putida BIRD-1 PssA YP_005929915.1 2331027 D 931281 CDS YP_005929916.1 386011639 12520280 2332588..2333733 1 NC_017530.1 diguanylate cyclase 2333733 12520280 PPUBIRD1_2065 Pseudomonas putida BIRD-1 diguanylate cyclase YP_005929916.1 2332588 D 931281 CDS YP_005929917.1 386011640 12520281 complement(2333855..2335228) 1 NC_017530.1 decarboxylase 2335228 12520281 PPUBIRD1_2066 Pseudomonas putida BIRD-1 decarboxylase YP_005929917.1 2333855 R 931281 CDS YP_005929918.1 386011641 12520282 complement(2335437..2336498) 1 NC_017530.1 hypothetical protein 2336498 12520282 PPUBIRD1_2067 Pseudomonas putida BIRD-1 hypothetical protein YP_005929918.1 2335437 R 931281 CDS YP_005929919.1 386011642 12520283 2336611..2337495 1 NC_017530.1 LysR family transcriptional regulator 2337495 12520283 PPUBIRD1_2068 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005929919.1 2336611 D 931281 CDS YP_005929920.1 386011643 12520284 complement(2337587..2337967) 1 NC_017530.1 Nicotinate phosphoribosyltransferase 2337967 12520284 PPUBIRD1_2069 Pseudomonas putida BIRD-1 Nicotinate phosphoribosyltransferase YP_005929920.1 2337587 R 931281 CDS YP_005929921.1 386011644 12520285 complement(2340115..2340621) 1 NC_017530.1 hypothetical protein 2340621 12520285 PPUBIRD1_2071 Pseudomonas putida BIRD-1 hypothetical protein YP_005929921.1 2340115 R 931281 CDS YP_005929922.1 386011645 12520286 complement(2342595..2344163) 1 NC_017530.1 hypothetical protein 2344163 12520286 PPUBIRD1_2072 Pseudomonas putida BIRD-1 hypothetical protein YP_005929922.1 2342595 R 931281 CDS YP_005929923.1 386011646 12520287 2350447..2351235 1 NC_017530.1 COG0665; DadA, Glycine/D-amino acid oxidases (deaminating) 2351235 12520287 PPUBIRD1_2075 Pseudomonas putida BIRD-1 DadA, Glycine/D-amino acid oxidases (deaminating) YP_005929923.1 2350447 D 931281 CDS YP_005929924.1 386011647 12520288 complement(2351268..2352320) 1 NC_017530.1 Major facilitator transporter 2352320 12520288 PPUBIRD1_2076 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005929924.1 2351268 R 931281 CDS YP_005929925.1 386011648 12520289 2353128..2353928 1 NC_017530.1 Citrate synthase 2353928 12520289 PPUBIRD1_2077 Pseudomonas putida BIRD-1 Citrate synthase YP_005929925.1 2353128 D 931281 CDS YP_005929926.1 386011649 12520290 2354110..2354640 1 NC_017530.1 TetR family transcriptional regulator 2354640 12520290 PPUBIRD1_2078 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005929926.1 2354110 D 931281 CDS YP_005929927.1 386011650 12520291 2354714..2355559 1 NC_017530.1 amino acid ABC transporter substrate-binding protein 2355559 12520291 PPUBIRD1_2079 Pseudomonas putida BIRD-1 amino acid ABC transporter substrate-binding protein YP_005929927.1 2354714 D 931281 CDS YP_005929928.1 386011651 12520292 complement(2355600..2356193) 1 NC_017530.1 TetR family transcriptional regulator 2356193 12520292 PPUBIRD1_2080 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005929928.1 2355600 R 931281 CDS YP_005929929.1 386011652 12520293 complement(2356229..2356600) 1 NC_017530.1 Thioesterase superfamily protein 2356600 12520293 PPUBIRD1_2081 Pseudomonas putida BIRD-1 Thioesterase superfamily protein YP_005929929.1 2356229 R 931281 CDS YP_005929930.1 386011653 12520294 complement(2356933..2358327) 1 NC_017530.1 FAD dependent oxidoreductase 2358327 12520294 PPUBIRD1_2082 Pseudomonas putida BIRD-1 FAD dependent oxidoreductase YP_005929930.1 2356933 R 931281 CDS YP_005929931.1 386011654 12520295 complement(2358531..2358929) 1 NC_017530.1 endoribonuclease L-PSP 2358929 12520295 PPUBIRD1_2084 Pseudomonas putida BIRD-1 endoribonuclease L-PSP YP_005929931.1 2358531 R 931281 CDS YP_005929932.1 386011655 12520296 2359284..2360072 1 NC_017530.1 Hydantoin racemase-like protein 2360072 12520296 PPUBIRD1_2085 Pseudomonas putida BIRD-1 Hydantoin racemase-like protein YP_005929932.1 2359284 D 931281 CDS YP_005929933.1 386011656 12520297 2360126..2360914 1 NC_017530.1 short-chain dehydrogenase 2360914 12520297 PPUBIRD1_2086 Pseudomonas putida BIRD-1 short-chain dehydrogenase YP_005929933.1 2360126 D 931281 CDS YP_005929934.1 386011657 12520298 2360911..2362095 1 NC_017530.1 Acyl-CoA dehydrogenase domain protein 2362095 12520298 PPUBIRD1_2087 Pseudomonas putida BIRD-1 Acyl-CoA dehydrogenase domain protein YP_005929934.1 2360911 D 931281 CDS YP_005929935.1 386011658 12520299 2362362..2362904 1 NC_017530.1 polysaccharide deacetylase 2362904 12520299 PPUBIRD1_2088 Pseudomonas putida BIRD-1 polysaccharide deacetylase YP_005929935.1 2362362 D 931281 CDS YP_005929936.1 386011659 12520300 2362920..2363402 1 NC_017530.1 MaoC-related acyl dehydratase 2363402 12520300 PPUBIRD1_2089 Pseudomonas putida BIRD-1 MaoC-related acyl dehydratase YP_005929936.1 2362920 D 931281 CDS YP_005929937.1 386011660 12520301 2363448..2364947 1 NC_017530.1 AMP-dependent synthetase and ligase 2364947 12520301 PPUBIRD1_2090 Pseudomonas putida BIRD-1 AMP-dependent synthetase and ligase YP_005929937.1 2363448 D 931281 CDS YP_005929938.1 386011661 12520302 2364940..2365836 1 NC_017530.1 hypothetical protein 2365836 12520302 PPUBIRD1_2091 Pseudomonas putida BIRD-1 hypothetical protein YP_005929938.1 2364940 D 931281 CDS YP_005929939.1 386011662 12520303 2366115..2366786 1 NC_017530.1 ABC transporter 2366786 12520303 PPUBIRD1_2092 Pseudomonas putida BIRD-1 ABC transporter YP_005929939.1 2366115 D 931281 CDS YP_005929940.1 386011663 12520304 2366897..2367433 1 NC_017530.1 Polar amino acid ABC transporter, inner membrane subunit 2367433 12520304 PPUBIRD1_2093 Pseudomonas putida BIRD-1 Polar amino acid ABC transporter, inner membrane subunit YP_005929940.1 2366897 D 931281 CDS YP_005929941.1 386011664 12520305 2367433..2368092 1 NC_017530.1 Polar amino acid ABC transporter, inner membrane subunit 2368092 12520305 PPUBIRD1_2094 Pseudomonas putida BIRD-1 Polar amino acid ABC transporter, inner membrane subunit YP_005929941.1 2367433 D 931281 CDS YP_005929942.1 386011665 12520306 2368951..2370288 1 NC_017530.1 Major facilitator superfamily MFS_1 2370288 12520306 PPUBIRD1_2095 Pseudomonas putida BIRD-1 Major facilitator superfamily MFS_1 YP_005929942.1 2368951 D 931281 CDS YP_005929943.1 386011666 12520307 complement(2370315..2372465) 1 NC_017530.1 Chemotaxis sensory transducer 2372465 12520307 PPUBIRD1_2096 Pseudomonas putida BIRD-1 Chemotaxis sensory transducer YP_005929943.1 2370315 R 931281 CDS YP_005929944.1 386011667 12520308 complement(2372549..2374570) 1 NC_017530.1 ABC transporter-like protein 2374570 12520308 PPUBIRD1_2097 Pseudomonas putida BIRD-1 ABC transporter-like protein YP_005929944.1 2372549 R 931281 CDS YP_005929945.1 386011668 12520309 complement(2375295..2376026) 1 NC_017530.1 hypothetical protein 2376026 12520309 PPUBIRD1_2098 Pseudomonas putida BIRD-1 hypothetical protein YP_005929945.1 2375295 R 931281 CDS YP_005929946.1 386011669 12520310 complement(2376276..2376953) 1 NC_017530.1 hypothetical protein 2376953 12520310 PPUBIRD1_2099 Pseudomonas putida BIRD-1 hypothetical protein YP_005929946.1 2376276 R 931281 CDS YP_005929947.1 386011670 12520311 complement(2376950..2377738) 1 NC_017530.1 Regulatory protein GntR HTH 2377738 12520311 PPUBIRD1_2100 Pseudomonas putida BIRD-1 Regulatory protein GntR HTH YP_005929947.1 2376950 R 931281 CDS YP_005929948.1 386011671 12520312 complement(2377859..2379292) 1 NC_017530.1 Aldehyde dehydrogenase 2379292 12520312 PPUBIRD1_2101 Pseudomonas putida BIRD-1 Aldehyde dehydrogenase YP_005929948.1 2377859 R 931281 CDS YP_005929949.1 386011672 12520313 complement(2379360..2380793) 1 NC_017530.1 Amino acid permease-associated region 2380793 12520313 PPUBIRD1_2102 Pseudomonas putida BIRD-1 Amino acid permease-associated region YP_005929949.1 2379360 R 931281 CDS YP_005929950.1 386011673 12520314 2381520..2383181 1 NC_017530.1 choline dehydrogenase; BetA 2383181 betA 12520314 betA Pseudomonas putida BIRD-1 BetA YP_005929950.1 2381520 D 931281 CDS YP_005929951.1 386011674 12520315 2384030..2384152 1 NC_017530.1 hypothetical protein 2384152 12520315 PPUBIRD1_2105 Pseudomonas putida BIRD-1 hypothetical protein YP_005929951.1 2384030 D 931281 CDS YP_005929952.1 386011675 12520316 2384316..2384525 1 NC_017530.1 hypothetical protein 2384525 12520316 PPUBIRD1_2106 Pseudomonas putida BIRD-1 hypothetical protein YP_005929952.1 2384316 D 931281 CDS YP_005929953.1 386011676 12520317 2386300..2387478 1 NC_017530.1 hypothetical protein 2387478 12520317 PPUBIRD1_2107 Pseudomonas putida BIRD-1 hypothetical protein YP_005929953.1 2386300 D 931281 CDS YP_005929954.1 386011677 12520318 2387622..2387918 1 NC_017530.1 Transcriptional regulator MvaT, P16 subunit, putative 2387918 12520318 PPUBIRD1_2108 Pseudomonas putida BIRD-1 Transcriptional regulator MvaT, P16 subunit, putative YP_005929954.1 2387622 D 931281 CDS YP_005929955.1 386011678 12520319 2388661..2389107 1 NC_017530.1 hypothetical protein 2389107 12520319 PPUBIRD1_2109 Pseudomonas putida BIRD-1 hypothetical protein YP_005929955.1 2388661 D 931281 CDS YP_005929956.1 386011679 12520320 complement(2389345..2389479) 1 NC_017530.1 Superfamily I DNA/RNA helicase 2389479 12520320 PPUBIRD1_2110 Pseudomonas putida BIRD-1 Superfamily I DNA/RNA helicase YP_005929956.1 2389345 R 931281 CDS YP_005929957.1 386011680 12520321 2389756..2390997 1 NC_017530.1 hypothetical protein 2390997 12520321 PPUBIRD1_2111 Pseudomonas putida BIRD-1 hypothetical protein YP_005929957.1 2389756 D 931281 CDS YP_005929958.1 386011681 12520322 2391268..2391486 1 NC_017530.1 hypothetical protein 2391486 12520322 PPUBIRD1_2112 Pseudomonas putida BIRD-1 hypothetical protein YP_005929958.1 2391268 D 931281 CDS YP_005929959.1 386011682 12520323 2391483..2393423 1 NC_017530.1 hypothetical protein 2393423 12520323 PPUBIRD1_2113 Pseudomonas putida BIRD-1 hypothetical protein YP_005929959.1 2391483 D 931281 CDS YP_005929960.1 386011683 12520324 complement(2394412..2396457) 1 NC_017530.1 hypothetical protein 2396457 12520324 PPUBIRD1_2115 Pseudomonas putida BIRD-1 hypothetical protein YP_005929960.1 2394412 R 931281 CDS YP_005929961.1 386011684 12520325 complement(2396467..2400027) 1 NC_017530.1 hypothetical protein 2400027 12520325 PPUBIRD1_2116 Pseudomonas putida BIRD-1 hypothetical protein YP_005929961.1 2396467 R 931281 CDS YP_005929962.1 386011685 12520326 complement(2400037..2402814) 1 NC_017530.1 hypothetical protein 2402814 12520326 PPUBIRD1_2117 Pseudomonas putida BIRD-1 hypothetical protein YP_005929962.1 2400037 R 931281 CDS YP_005929963.1 386011686 12520327 complement(2402817..2409308) 1 NC_017530.1 hypothetical protein 2409308 12520327 PPUBIRD1_2118 Pseudomonas putida BIRD-1 hypothetical protein YP_005929963.1 2402817 R 931281 CDS YP_005929964.1 386011687 12520328 2410444..2410977 1 NC_017530.1 XRE family transcriptional regulator 2410977 12520328 PPUBIRD1_2119 Pseudomonas putida BIRD-1 XRE family transcriptional regulator YP_005929964.1 2410444 D 931281 CDS YP_005929965.1 386011688 12520329 2410974..2411795 1 NC_017530.1 hypothetical protein 2411795 12520329 PPUBIRD1_2120 Pseudomonas putida BIRD-1 hypothetical protein YP_005929965.1 2410974 D 931281 CDS YP_005929966.1 386011689 12520330 2412025..2412420 1 NC_017530.1 hypothetical protein 2412420 12520330 PPUBIRD1_2122 Pseudomonas putida BIRD-1 hypothetical protein YP_005929966.1 2412025 D 931281 CDS YP_005929967.1 386011690 12520331 2412506..2412691 1 NC_017530.1 hypothetical protein 2412691 12520331 PPUBIRD1_2123 Pseudomonas putida BIRD-1 hypothetical protein YP_005929967.1 2412506 D 931281 CDS YP_005929968.1 386011691 12520332 complement(2412787..2413911) 1 NC_017530.1 hypothetical protein 2413911 12520332 PPUBIRD1_2124 Pseudomonas putida BIRD-1 hypothetical protein YP_005929968.1 2412787 R 931281 CDS YP_005929969.1 386011692 12520333 2414976..2416364 1 NC_017530.1 Phage integrase family protein 2416364 12520333 PPUBIRD1_2125 Pseudomonas putida BIRD-1 Phage integrase family protein YP_005929969.1 2414976 D 931281 CDS YP_005929970.1 386011693 12520334 2416361..2419675 1 NC_017530.1 Phage integrase family protein 2419675 12520334 PPUBIRD1_2126 Pseudomonas putida BIRD-1 Phage integrase family protein YP_005929970.1 2416361 D 931281 CDS YP_005929971.1 386011694 12520335 2420136..2420309 1 NC_017530.1 hypothetical protein 2420309 12520335 PPUBIRD1_2127 Pseudomonas putida BIRD-1 hypothetical protein YP_005929971.1 2420136 D 931281 CDS YP_005929972.1 386011695 12520336 complement(2421029..2421895) 1 NC_017530.1 Nicotinate phosphoribosyltransferase 2421895 12520336 PPUBIRD1_2128 Pseudomonas putida BIRD-1 Nicotinate phosphoribosyltransferase YP_005929972.1 2421029 R 931281 CDS YP_005929973.1 386011696 12520337 complement(2421892..2422542) 1 NC_017530.1 nicotinamidase 2422542 12520337 PPUBIRD1_2129 Pseudomonas putida BIRD-1 nicotinamidase YP_005929973.1 2421892 R 931281 CDS YP_005929974.1 386011697 12520338 2422680..2423384 1 NC_017530.1 NUDIX hydrolase 2423384 12520338 PPUBIRD1_2130 Pseudomonas putida BIRD-1 NUDIX hydrolase YP_005929974.1 2422680 D 931281 CDS YP_005929975.1 386011698 12520339 complement(2423629..2425041) 1 NC_017530.1 Permease for cytosine/purine, uracil, thiamine, allantoin 2425041 12520339 PPUBIRD1_2131 Pseudomonas putida BIRD-1 Permease for cytosine/purine, uracil, thiamine, allantoin YP_005929975.1 2423629 R 931281 CDS YP_005929976.1 386011699 12520340 complement(2425438..2425890) 1 NC_017530.1 AsnC family transcriptional regulator 2425890 12520340 PPUBIRD1_2132 Pseudomonas putida BIRD-1 AsnC family transcriptional regulator YP_005929976.1 2425438 R 931281 CDS YP_005929977.1 386011700 12520341 2426002..2426616 1 NC_017530.1 Amino acid transporter LysE 2426616 12520341 PPUBIRD1_2133 Pseudomonas putida BIRD-1 Amino acid transporter LysE YP_005929977.1 2426002 D 931281 CDS YP_005929978.1 386011701 12520342 2426683..2427315 1 NC_017530.1 Lysine exporter protein LysE/YggA 2427315 12520342 PPUBIRD1_2134 Pseudomonas putida BIRD-1 Lysine exporter protein LysE/YggA YP_005929978.1 2426683 D 931281 CDS YP_005929979.1 386011702 12520343 complement(2427338..2429491) 1 NC_017530.1 GAF sensor hybrid histidine kinase 2429491 12520343 PPUBIRD1_2135 Pseudomonas putida BIRD-1 GAF sensor hybrid histidine kinase YP_005929979.1 2427338 R 931281 CDS YP_005929980.1 386011703 12520344 complement(2429673..2430236) 1 NC_017530.1 bifunctional; NUDIX hydrolase 2430236 12520344 PPUBIRD1_2136 Pseudomonas putida BIRD-1 NUDIX hydrolase YP_005929980.1 2429673 R 931281 CDS YP_005929981.1 386011704 12520345 complement(2430239..2430991) 1 NC_017530.1 GntR family transcriptional regulator 2430991 12520345 PPUBIRD1_2137 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005929981.1 2430239 R 931281 CDS YP_005929982.1 386011705 12520346 complement(2431080..2431469) 1 NC_017530.1 Carboxymuconolactone decarboxylase 2431469 12520346 PPUBIRD1_2138 Pseudomonas putida BIRD-1 Carboxymuconolactone decarboxylase YP_005929982.1 2431080 R 931281 CDS YP_005929983.1 386011706 12520347 complement(2431656..2432141) 1 NC_017530.1 Oxidoreductase, putative 2432141 12520347 PPUBIRD1_2139 Pseudomonas putida BIRD-1 Oxidoreductase, putative YP_005929983.1 2431656 R 931281 CDS YP_005929984.1 386011707 12520348 complement(2432154..2433635) 1 NC_017530.1 Aldehyde dehydrogenase 2433635 12520348 PPUBIRD1_2140 Pseudomonas putida BIRD-1 Aldehyde dehydrogenase YP_005929984.1 2432154 R 931281 CDS YP_005929985.1 386011708 12520349 complement(2433632..2434465) 1 NC_017530.1 Alpha/beta hydrolase fold project 2434465 12520349 PPUBIRD1_2141 Pseudomonas putida BIRD-1 Alpha/beta hydrolase fold project YP_005929985.1 2433632 R 931281 CDS YP_005929986.1 386011709 12520350 complement(2434534..2435130) 1 NC_017530.1 hypothetical protein 2435130 12520350 PPUBIRD1_2142 Pseudomonas putida BIRD-1 hypothetical protein YP_005929986.1 2434534 R 931281 CDS YP_005929987.1 386011710 12520351 complement(2435395..2436435) 1 NC_017530.1 Luciferase family protein 2436435 12520351 PPUBIRD1_2143 Pseudomonas putida BIRD-1 Luciferase family protein YP_005929987.1 2435395 R 931281 CDS YP_005929988.1 386011711 12520352 complement(2436516..2437001) 1 NC_017530.1 Flavin reductase domain-containing protein 2437001 12520352 PPUBIRD1_2144 Pseudomonas putida BIRD-1 Flavin reductase domain-containing protein YP_005929988.1 2436516 R 931281 CDS YP_005929989.1 386011712 12520353 2437318..2438724 1 NC_017530.1 Permease for cytosine/purine, uracil, thiamine, allantoin 2438724 12520353 PPUBIRD1_2145 Pseudomonas putida BIRD-1 Permease for cytosine/purine, uracil, thiamine, allantoin YP_005929989.1 2437318 D 931281 CDS YP_005929990.1 386011713 12520354 complement(2438777..2440402) 1 NC_017530.1 methyl-accepting chemotaxis sensory transducer 2440402 12520354 PPUBIRD1_2146 Pseudomonas putida BIRD-1 methyl-accepting chemotaxis sensory transducer YP_005929990.1 2438777 R 931281 CDS YP_005929991.1 386011714 12520355 complement(2440634..2441836) 1 NC_017530.1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2441836 12520355 PPUBIRD1_2147 Pseudomonas putida BIRD-1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_005929991.1 2440634 R 931281 CDS YP_005929992.1 386011715 12520356 2442030..2442569 1 NC_017530.1 BadM/Rrf2 family transcriptional regulator 2442569 12520356 PPUBIRD1_2148 Pseudomonas putida BIRD-1 BadM/Rrf2 family transcriptional regulator YP_005929992.1 2442030 D 931281 CDS YP_005929993.1 386011716 12520357 complement(2442616..2443527) 1 NC_017530.1 Helix-turn-helix domain-containing protein 2443527 12520357 PPUBIRD1_2149 Pseudomonas putida BIRD-1 Helix-turn-helix domain-containing protein YP_005929993.1 2442616 R 931281 CDS YP_005929994.1 386011717 12520358 2443630..2444190 1 NC_017530.1 Alkylhydroperoxidase 2444190 12520358 PPUBIRD1_2150 Pseudomonas putida BIRD-1 Alkylhydroperoxidase YP_005929994.1 2443630 D 931281 CDS YP_005929995.1 386011718 12520359 2444290..2445354 1 NC_017530.1 Acyl-CoA dehydrogenase, putative 2445354 12520359 PPUBIRD1_2151 Pseudomonas putida BIRD-1 Acyl-CoA dehydrogenase, putative YP_005929995.1 2444290 D 931281 CDS YP_005929996.1 386011719 12520360 2445351..2446172 1 NC_017530.1 ABC transporter 2446172 12520360 PPUBIRD1_2152 Pseudomonas putida BIRD-1 ABC transporter YP_005929996.1 2445351 D 931281 CDS YP_005929997.1 386011720 12520361 2446165..2447364 1 NC_017530.1 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein 2447364 12520361 PPUBIRD1_2153 Pseudomonas putida BIRD-1 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein YP_005929997.1 2446165 D 931281 CDS YP_005929998.1 386011721 12520362 2447364..2448119 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 2448119 12520362 PPUBIRD1_2154 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005929998.1 2447364 D 931281 CDS YP_005929999.1 386011722 12520363 complement(2448231..2448917) 1 NC_017530.1 Acetyltransferase 2448917 12520363 PPUBIRD1_2155 Pseudomonas putida BIRD-1 Acetyltransferase YP_005929999.1 2448231 R 931281 CDS YP_005930000.1 386011723 12520364 complement(2448994..2449935) 1 NC_017530.1 N-acetyl-gamma-glutamyl-phosphate reductase 2 2449935 12520364 PPUBIRD1_2156 Pseudomonas putida BIRD-1 N-acetyl-gamma-glutamyl-phosphate reductase 2 YP_005930000.1 2448994 R 931281 CDS YP_005930001.1 386011724 12520365 2450092..2450970 1 NC_017530.1 LysR family transcriptional regulator 2450970 12520365 PPUBIRD1_2157 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930001.1 2450092 D 931281 CDS YP_005930002.1 386011725 12520366 complement(2451037..2451687) 1 NC_017530.1 hypothetical protein 2451687 12520366 PPUBIRD1_2158 Pseudomonas putida BIRD-1 hypothetical protein YP_005930002.1 2451037 R 931281 CDS YP_005930003.1 386011726 12520367 2451884..2452363 1 NC_017530.1 3-demethylubiquinone-9 3-methyltransferase 2452363 12520367 PPUBIRD1_2159 Pseudomonas putida BIRD-1 3-demethylubiquinone-9 3-methyltransferase YP_005930003.1 2451884 D 931281 CDS YP_005930004.1 386011727 12520368 complement(2452444..2454189) 1 NC_017530.1 Choline/carnitine/betaine transporter 2454189 12520368 PPUBIRD1_2160 Pseudomonas putida BIRD-1 Choline/carnitine/betaine transporter YP_005930004.1 2452444 R 931281 CDS YP_005930005.1 386011728 12520369 2454504..2454821 1 NC_017530.1 hypothetical protein 2454821 12520369 PPUBIRD1_2161 Pseudomonas putida BIRD-1 hypothetical protein YP_005930005.1 2454504 D 931281 CDS YP_005930006.1 386011729 12520370 2454830..2455030 1 NC_017530.1 hypothetical protein 2455030 12520370 PPUBIRD1_2162 Pseudomonas putida BIRD-1 hypothetical protein YP_005930006.1 2454830 D 931281 CDS YP_005930007.1 386011730 12520371 2455080..2455721 1 NC_017530.1 Lysine exporter protein LysE/YggA 2455721 12520371 PPUBIRD1_2163 Pseudomonas putida BIRD-1 Lysine exporter protein LysE/YggA YP_005930007.1 2455080 D 931281 CDS YP_005930008.1 386011731 12520372 2455929..2456717 1 NC_017530.1 hypothetical protein 2456717 12520372 PPUBIRD1_2164 Pseudomonas putida BIRD-1 hypothetical protein YP_005930008.1 2455929 D 931281 CDS YP_005930009.1 386011732 12520373 complement(2456786..2458129) 1 NC_017530.1 Gluconate 2-dehydrogenase acceptor subunit 2458129 12520373 PPUBIRD1_2165 Pseudomonas putida BIRD-1 Gluconate 2-dehydrogenase acceptor subunit YP_005930009.1 2456786 R 931281 CDS YP_005930010.1 386011733 12520374 complement(2458148..2460400) 1 NC_017530.1 Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding protein 2460400 12520374 PPUBIRD1_2166 Pseudomonas putida BIRD-1 Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding protein YP_005930010.1 2458148 R 931281 CDS YP_005930011.1 386011734 12520375 complement(2460400..2460855) 1 NC_017530.1 2Fe-2S iron-sulfur cluster binding domain-containing protein 2460855 12520375 PPUBIRD1_2167 Pseudomonas putida BIRD-1 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_005930011.1 2460400 R 931281 CDS YP_005930012.1 386011735 12520376 2461126..2463312 1 NC_017530.1 hypothetical protein 2463312 12520376 PPUBIRD1_2168 Pseudomonas putida BIRD-1 hypothetical protein YP_005930012.1 2461126 D 931281 CDS YP_005930013.1 386011736 12520377 complement(2463522..2464271) 1 NC_017530.1 hypothetical protein 2464271 12520377 PPUBIRD1_2169 Pseudomonas putida BIRD-1 hypothetical protein YP_005930013.1 2463522 R 931281 CDS YP_005930014.1 386011737 12520378 complement(2464664..2465407) 1 NC_017530.1 hypothetical protein 2465407 12520378 PPUBIRD1_2170 Pseudomonas putida BIRD-1 hypothetical protein YP_005930014.1 2464664 R 931281 CDS YP_005930015.1 386011738 12520379 complement(2465707..2466351) 1 NC_017530.1 hypothetical protein 2466351 12520379 PPUBIRD1_2171 Pseudomonas putida BIRD-1 hypothetical protein YP_005930015.1 2465707 R 931281 CDS YP_005930016.1 386011739 12520380 complement(2466606..2469596) 1 NC_017530.1 hypothetical protein 2469596 12520380 PPUBIRD1_2172 Pseudomonas putida BIRD-1 hypothetical protein YP_005930016.1 2466606 R 931281 CDS YP_005930017.1 386011740 12520381 complement(2469929..2470261) 1 NC_017530.1 hypothetical protein 2470261 12520381 PPUBIRD1_2174 Pseudomonas putida BIRD-1 hypothetical protein YP_005930017.1 2469929 R 931281 CDS YP_005930018.1 386011741 12520382 2470378..2470806 1 NC_017530.1 hypothetical protein 2470806 12520382 PPUBIRD1_2175 Pseudomonas putida BIRD-1 hypothetical protein YP_005930018.1 2470378 D 931281 CDS YP_005930019.1 386011742 12520383 2470803..2472095 1 NC_017530.1 L-sorbosone dehydrogenase 2472095 12520383 PPUBIRD1_2176 Pseudomonas putida BIRD-1 L-sorbosone dehydrogenase YP_005930019.1 2470803 D 931281 CDS YP_005930020.1 386011743 12520384 complement(2472180..2473778) 1 NC_017530.1 TonB-dependent siderophore receptor 2473778 12520384 PPUBIRD1_2177 Pseudomonas putida BIRD-1 TonB-dependent siderophore receptor YP_005930020.1 2472180 R 931281 CDS YP_005930021.1 386011744 12520385 complement(2473775..2474311) 1 NC_017530.1 TonB-dependent siderophore receptor 2474311 12520385 PPUBIRD1_2178 Pseudomonas putida BIRD-1 TonB-dependent siderophore receptor YP_005930021.1 2473775 R 931281 CDS YP_005930022.1 386011745 12520386 2474527..2475108 1 NC_017530.1 hypothetical protein 2475108 12520386 PPUBIRD1_2179 Pseudomonas putida BIRD-1 hypothetical protein YP_005930022.1 2474527 D 931281 CDS YP_005930023.1 386011746 12520387 complement(2475256..2476020) 1 NC_017530.1 hypothetical protein 2476020 12520387 PPUBIRD1_2180 Pseudomonas putida BIRD-1 hypothetical protein YP_005930023.1 2475256 R 931281 CDS YP_005930024.1 386011747 12520388 2476197..2476715 1 NC_017530.1 hypothetical protein 2476715 12520388 PPUBIRD1_2181 Pseudomonas putida BIRD-1 hypothetical protein YP_005930024.1 2476197 D 931281 CDS YP_005930025.1 386011748 12520389 complement(2476716..2477645) 1 NC_017530.1 LysR family transcriptional regulator 2477645 12520389 PPUBIRD1_2182 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930025.1 2476716 R 931281 CDS YP_005930026.1 386011749 12520390 2477824..2478969 1 NC_017530.1 hypothetical protein 2478969 12520390 PPUBIRD1_2183 Pseudomonas putida BIRD-1 hypothetical protein YP_005930026.1 2477824 D 931281 CDS YP_005930027.1 386011750 12520391 2479083..2480057 1 NC_017530.1 quinone oxidoreductase; Qor 2480057 qor 12520391 qor Pseudomonas putida BIRD-1 Qor YP_005930027.1 2479083 D 931281 CDS YP_005930028.1 386011751 12520392 2480097..2481017 1 NC_017530.1 LysR family transcriptional regulator 2481017 12520392 PPUBIRD1_2185 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930028.1 2480097 D 931281 CDS YP_005930029.1 386011752 12520393 complement(2481049..2481357) 1 NC_017530.1 hypothetical protein 2481357 12520393 PPUBIRD1_2186 Pseudomonas putida BIRD-1 hypothetical protein YP_005930029.1 2481049 R 931281 CDS YP_005930030.1 386011753 12520394 complement(2481453..2482103) 1 NC_017530.1 hypothetical protein 2482103 12520394 PPUBIRD1_2187 Pseudomonas putida BIRD-1 hypothetical protein YP_005930030.1 2481453 R 931281 CDS YP_005930031.1 386011754 12520395 2482301..2483050 1 NC_017530.1 GntR family transcriptional regulator 2483050 12520395 PPUBIRD1_2189 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005930031.1 2482301 D 931281 CDS YP_005930032.1 386011755 12520396 complement(2483185..2484765) 1 NC_017530.1 Aldehyde dehydrogenase 2484765 12520396 PPUBIRD1_2190 Pseudomonas putida BIRD-1 Aldehyde dehydrogenase YP_005930032.1 2483185 R 931281 CDS YP_005930033.1 386011756 12520397 complement(2484824..2486377) 1 NC_017530.1 D-galactarate dehydratase 2486377 12520397 PPUBIRD1_2191 Pseudomonas putida BIRD-1 D-galactarate dehydratase YP_005930033.1 2484824 R 931281 CDS YP_005930034.1 386011757 12520398 complement(2486455..2487819) 1 NC_017530.1 D-galactonate transporter 2487819 12520398 PPUBIRD1_2192 Pseudomonas putida BIRD-1 D-galactonate transporter YP_005930034.1 2486455 R 931281 CDS YP_005930035.1 386011758 12520399 complement(2487924..2488835) 1 NC_017530.1 5-dehydro-4-deoxyglucarate dehydratase 2488835 12520399 PPUBIRD1_2193 Pseudomonas putida BIRD-1 5-dehydro-4-deoxyglucarate dehydratase YP_005930035.1 2487924 R 931281 CDS YP_005930036.1 386011759 12520400 complement(2489207..2490016) 1 NC_017530.1 Peptidase C26 2490016 12520400 PPUBIRD1_2194 Pseudomonas putida BIRD-1 Peptidase C26 YP_005930036.1 2489207 R 931281 CDS YP_005930037.1 386011760 12520401 complement(2490503..2491285) 1 NC_017530.1 Amino acid ABC transporter ATP-binding protein 2491285 12520401 PPUBIRD1_2195 Pseudomonas putida BIRD-1 Amino acid ABC transporter ATP-binding protein YP_005930037.1 2490503 R 931281 CDS YP_005930038.1 386011761 12520402 complement(2491308..2492552) 1 NC_017530.1 FAD dependent oxidoreductase 2492552 12520402 PPUBIRD1_2196 Pseudomonas putida BIRD-1 FAD dependent oxidoreductase YP_005930038.1 2491308 R 931281 CDS YP_005930039.1 386011762 12520403 complement(2492569..2493279) 1 NC_017530.1 Polar amino acid ABC transporter inner membrane subunit 2493279 12520403 PPUBIRD1_2197 Pseudomonas putida BIRD-1 Polar amino acid ABC transporter inner membrane subunit YP_005930039.1 2492569 R 931281 CDS YP_005930040.1 386011763 12520404 complement(2493276..2493995) 1 NC_017530.1 Polar amino acid ABC transporter inner membrane subunit 2493995 12520404 PPUBIRD1_2198 Pseudomonas putida BIRD-1 Polar amino acid ABC transporter inner membrane subunit YP_005930040.1 2493276 R 931281 CDS YP_005930041.1 386011764 12520405 complement(2494165..2494917) 1 NC_017530.1 Extracellular solute-binding protein 2494917 12520405 PPUBIRD1_2199 Pseudomonas putida BIRD-1 Extracellular solute-binding protein YP_005930041.1 2494165 R 931281 CDS YP_005930042.1 386011765 12520406 complement(2494940..2495812) 1 NC_017530.1 RpiR family transcriptional regulator 2495812 12520406 PPUBIRD1_2200 Pseudomonas putida BIRD-1 RpiR family transcriptional regulator YP_005930042.1 2494940 R 931281 CDS YP_005930043.1 386011766 12520407 2495955..2496980 1 NC_017530.1 delta1-piperideine-2-carboxylate reductase; DpkA 2496980 dpkA 12520407 dpkA Pseudomonas putida BIRD-1 DpkA YP_005930043.1 2495955 D 931281 CDS YP_005930044.1 386011767 12520408 2497144..2498340 1 NC_017530.1 aromatic amino acid aminotransferase; TyrB 2498340 tyrB 12520408 tyrB Pseudomonas putida BIRD-1 TyrB YP_005930044.1 2497144 D 931281 CDS YP_005930045.1 386011768 12520409 2498725..2500005 1 NC_017530.1 Aromatic amino acid permease 2500005 12520409 PPUBIRD1_2204 Pseudomonas putida BIRD-1 Aromatic amino acid permease YP_005930045.1 2498725 D 931281 CDS YP_005930046.1 386011769 12520410 complement(2500077..2501108) 1 NC_017530.1 Bcr/CflA family multidrug resistance transporter 2501108 12520410 PPUBIRD1_2205 Pseudomonas putida BIRD-1 Bcr/CflA family multidrug resistance transporter YP_005930046.1 2500077 R 931281 CDS YP_005930047.1 386011770 12520411 2503796..2504296 1 NC_017530.1 redoxin domain-containing protein 2504296 12520411 PPUBIRD1_2206 Pseudomonas putida BIRD-1 redoxin domain-containing protein YP_005930047.1 2503796 D 931281 CDS YP_005930048.1 386011771 12520412 2504645..2505952 1 NC_017530.1 Efflux transporter, RND family, MFP subunit 2505952 12520412 PPUBIRD1_2207 Pseudomonas putida BIRD-1 Efflux transporter, RND family, MFP subunit YP_005930048.1 2504645 D 931281 CDS YP_005930049.1 386011772 12520413 2505949..2509047 1 NC_017530.1 Multidrug resistance protein mdtB 2509047 12520413 PPUBIRD1_2208 Pseudomonas putida BIRD-1 Multidrug resistance protein mdtB YP_005930049.1 2505949 D 931281 CDS YP_005930050.1 386011773 12520414 2509044..2512151 1 NC_017530.1 Multidrug resistance protein mdtC 2512151 12520414 PPUBIRD1_2209 Pseudomonas putida BIRD-1 Multidrug resistance protein mdtC YP_005930050.1 2509044 D 931281 CDS YP_005930051.1 386011774 12520415 2512148..2513638 1 NC_017530.1 RND efflux system outer membrane lipoprotein 2513638 12520415 PPUBIRD1_2210 Pseudomonas putida BIRD-1 RND efflux system outer membrane lipoprotein YP_005930051.1 2512148 D 931281 CDS YP_005930052.1 386011775 12520416 2513768..2515855 1 NC_017530.1 signaling protein 2515855 12520416 PPUBIRD1_2211 Pseudomonas putida BIRD-1 signaling protein YP_005930052.1 2513768 D 931281 CDS YP_005930053.1 386011776 12520417 complement(2515852..2516112) 1 NC_017530.1 hypothetical protein 2516112 12520417 PPUBIRD1_2212 Pseudomonas putida BIRD-1 hypothetical protein YP_005930053.1 2515852 R 931281 CDS YP_005930054.1 386011777 12520418 complement(2516387..2517034) 1 NC_017530.1 hypothetical protein 2517034 12520418 PPUBIRD1_2213 Pseudomonas putida BIRD-1 hypothetical protein YP_005930054.1 2516387 R 931281 CDS YP_005930055.1 386011778 12520419 2517208..2518845 1 NC_017530.1 Phosphoglucomutase 2518845 12520419 PPUBIRD1_2214 Pseudomonas putida BIRD-1 Phosphoglucomutase YP_005930055.1 2517208 D 931281 CDS YP_005930056.1 386011779 12520420 2518924..2519436 1 NC_017530.1 ECF subfamily RNA polymerase sigma-24 factor 2519436 12520420 PPUBIRD1_2215 Pseudomonas putida BIRD-1 ECF subfamily RNA polymerase sigma-24 factor YP_005930056.1 2518924 D 931281 CDS YP_005930057.1 386011780 12520421 2519433..2520377 1 NC_017530.1 Anti-FecI sigma factor, FecR 2520377 12520421 PPUBIRD1_2216 Pseudomonas putida BIRD-1 Anti-FecI sigma factor, FecR YP_005930057.1 2519433 D 931281 CDS YP_005930058.1 386011781 12520422 2520445..2522850 1 NC_017530.1 TonB-dependent siderophore receptor 2522850 12520422 PPUBIRD1_2217 Pseudomonas putida BIRD-1 TonB-dependent siderophore receptor YP_005930058.1 2520445 D 931281 CDS YP_005930059.1 386011782 12520423 complement(2522931..2523869) 1 NC_017530.1 LysR family transcriptional regulator 2523869 12520423 PPUBIRD1_2218 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930059.1 2522931 R 931281 CDS YP_005930060.1 386011783 12520424 2524018..2524845 1 NC_017530.1 amidohydrolase 2524845 12520424 PPUBIRD1_2219 Pseudomonas putida BIRD-1 amidohydrolase YP_005930060.1 2524018 D 931281 CDS YP_005930061.1 386011784 12520425 complement(2525131..2525547) 1 NC_017530.1 endoribonuclease L-PSP 2525547 12520425 PPUBIRD1_2220 Pseudomonas putida BIRD-1 endoribonuclease L-PSP YP_005930061.1 2525131 R 931281 CDS YP_005930062.1 386011785 12520426 complement(2525547..2526866) 1 NC_017530.1 Monooxygenase, putative 2526866 12520426 PPUBIRD1_2221 Pseudomonas putida BIRD-1 Monooxygenase, putative YP_005930062.1 2525547 R 931281 CDS YP_005930063.1 386011786 12520427 2527184..2527861 1 NC_017530.1 hypothetical protein 2527861 12520427 PPUBIRD1_2222 Pseudomonas putida BIRD-1 hypothetical protein YP_005930063.1 2527184 D 931281 CDS YP_005930064.1 386011787 12520428 2527854..2529014 1 NC_017530.1 Acetylornithine deacetylase 2529014 12520428 PPUBIRD1_2223 Pseudomonas putida BIRD-1 Acetylornithine deacetylase YP_005930064.1 2527854 D 931281 CDS YP_005930065.1 386011788 12520429 complement(2529057..2530325) 1 NC_017530.1 carbohydrate-selective porin OprB 2530325 12520429 PPUBIRD1_2224 Pseudomonas putida BIRD-1 carbohydrate-selective porin OprB YP_005930065.1 2529057 R 931281 CDS YP_005930066.1 386011789 12520430 complement(2530426..2532843) 1 NC_017530.1 quinate dehydrogenase 2532843 12520430 PPUBIRD1_2225 Pseudomonas putida BIRD-1 quinate dehydrogenase YP_005930066.1 2530426 R 931281 CDS YP_005930067.1 386011790 12520431 complement(2533107..2533457) 1 NC_017530.1 hypothetical protein 2533457 12520431 PPUBIRD1_2226 Pseudomonas putida BIRD-1 hypothetical protein YP_005930067.1 2533107 R 931281 CDS YP_005930068.1 386011791 12520432 2533557..2534480 1 NC_017530.1 LysR family transcriptional regulator 2534480 12520432 PPUBIRD1_2227 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930068.1 2533557 D 931281 CDS YP_005930069.1 386011792 12520433 2534587..2535786 1 NC_017530.1 Major facilitator transporter 2535786 12520433 PPUBIRD1_2228 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005930069.1 2534587 D 931281 CDS YP_005930070.1 386011793 12520434 complement(2535835..2536446) 1 NC_017530.1 Amino acid transporter LysE 2536446 12520434 PPUBIRD1_2229 Pseudomonas putida BIRD-1 Amino acid transporter LysE YP_005930070.1 2535835 R 931281 CDS YP_005930071.1 386011794 12520435 2536551..2537534 1 NC_017530.1 AraC family transcriptional regulator 2537534 12520435 PPUBIRD1_2230 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005930071.1 2536551 D 931281 CDS YP_005930072.1 386011795 12520436 complement(2537536..2538387) 1 NC_017530.1 hypothetical protein 2538387 12520436 PPUBIRD1_2231 Pseudomonas putida BIRD-1 hypothetical protein YP_005930072.1 2537536 R 931281 CDS YP_005930073.1 386011796 12520437 complement(2538594..2539205) 1 NC_017530.1 hypothetical protein 2539205 12520437 PPUBIRD1_2232 Pseudomonas putida BIRD-1 hypothetical protein YP_005930073.1 2538594 R 931281 CDS YP_005930074.1 386011797 12520438 complement(2539240..2540157) 1 NC_017530.1 Auxin efflux carrier 2540157 12520438 PPUBIRD1_2233 Pseudomonas putida BIRD-1 Auxin efflux carrier YP_005930074.1 2539240 R 931281 CDS YP_005930075.1 386011798 12520439 complement(2540293..2541156) 1 NC_017530.1 LysR family transcriptional regulator 2541156 12520439 PPUBIRD1_2234 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930075.1 2540293 R 931281 CDS YP_005930076.1 386011799 12520440 complement(2541250..2542098) 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 2542098 12520440 PPUBIRD1_2235 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005930076.1 2541250 R 931281 CDS YP_005930077.1 386011800 12520441 complement(2542095..2543111) 1 NC_017530.1 glycine betaine ABC transporter substrate-binding protein 2543111 12520441 PPUBIRD1_2236 Pseudomonas putida BIRD-1 glycine betaine ABC transporter substrate-binding protein YP_005930077.1 2542095 R 931281 CDS YP_005930078.1 386011801 12520442 complement(2543206..2545350) 1 NC_017530.1 Methyl-accepting chemotaxis transducer 2545350 12520442 PPUBIRD1_2237 Pseudomonas putida BIRD-1 Methyl-accepting chemotaxis transducer YP_005930078.1 2543206 R 931281 CDS YP_005930079.1 386011802 12520443 2545598..2546917 1 NC_017530.1 Na+/H+ antiporter NhaC 2546917 12520443 PPUBIRD1_2238 Pseudomonas putida BIRD-1 Na+/H+ antiporter NhaC YP_005930079.1 2545598 D 931281 CDS YP_005930080.1 386011803 12520444 complement(2546932..2547939) 1 NC_017530.1 Anti-FecI sigma factor, FecR 2547939 12520444 PPUBIRD1_2239 Pseudomonas putida BIRD-1 Anti-FecI sigma factor, FecR YP_005930080.1 2546932 R 931281 CDS YP_005930081.1 386011804 12520445 complement(2548201..2549970) 1 NC_017530.1 Acyl-CoA dehydrogenase domain-containing protein 2549970 12520445 PPUBIRD1_2240 Pseudomonas putida BIRD-1 Acyl-CoA dehydrogenase domain-containing protein YP_005930081.1 2548201 R 931281 CDS YP_005930082.1 386011805 12520446 complement(2550064..2551686) 1 NC_017530.1 Acyl-CoA synthetase 2551686 12520446 PPUBIRD1_2241 Pseudomonas putida BIRD-1 Acyl-CoA synthetase YP_005930082.1 2550064 R 931281 CDS YP_005930083.1 386011806 12520447 2551880..2553286 1 NC_017530.1 PAS/PAC sensor signal transduction histidine kinase 2553286 12520447 PPUBIRD1_2242 Pseudomonas putida BIRD-1 PAS/PAC sensor signal transduction histidine kinase YP_005930083.1 2551880 D 931281 CDS YP_005930084.1 386011807 12520448 2553296..2553928 1 NC_017530.1 LuxR family DNA-binding response regulator 2553928 12520448 PPUBIRD1_2243 Pseudomonas putida BIRD-1 LuxR family DNA-binding response regulator YP_005930084.1 2553296 D 931281 CDS YP_005930085.1 386011808 12520449 2554107..2554580 1 NC_017530.1 MarR family transcriptional regulator 2554580 12520449 PPUBIRD1_2244 Pseudomonas putida BIRD-1 MarR family transcriptional regulator YP_005930085.1 2554107 D 931281 CDS YP_005930086.1 386011809 12520450 2554611..2555804 1 NC_017530.1 secretion protein HlyD family protein; EmrA 2555804 emrA 12520450 emrA Pseudomonas putida BIRD-1 EmrA YP_005930086.1 2554611 D 931281 CDS YP_005930087.1 386011810 12520451 2555801..2557336 1 NC_017530.1 EmrB/QacA family drug resistance transporter 2557336 12520451 PPUBIRD1_2246 Pseudomonas putida BIRD-1 EmrB/QacA family drug resistance transporter YP_005930087.1 2555801 D 931281 CDS YP_005930088.1 386011811 12520452 2557457..2558392 1 NC_017530.1 short-chain dehydrogenase 2558392 12520452 PPUBIRD1_2247 Pseudomonas putida BIRD-1 short-chain dehydrogenase YP_005930088.1 2557457 D 931281 CDS YP_005930089.1 386011812 12520453 complement(2558400..2560466) 1 NC_017530.1 PAS/PAC sensor hybrid histidine kinase 2560466 12520453 PPUBIRD1_2248 Pseudomonas putida BIRD-1 PAS/PAC sensor hybrid histidine kinase YP_005930089.1 2558400 R 931281 CDS YP_005930090.1 386011813 12520454 complement(2560528..2562189) 1 NC_017530.1 PAS/PAC sensor hybrid histidine kinase 2562189 12520454 PPUBIRD1_2249 Pseudomonas putida BIRD-1 PAS/PAC sensor hybrid histidine kinase YP_005930090.1 2560528 R 931281 CDS YP_005930091.1 386011814 12520455 complement(2562247..2563656) 1 NC_017530.1 GntR family transcriptional regulator 2563656 12520455 PPUBIRD1_2250 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005930091.1 2562247 R 931281 CDS YP_005930092.1 386011815 12520456 complement(2563707..2565110) 1 NC_017530.1 Iron-sulfur cluster-binding protein 2565110 12520456 PPUBIRD1_2251 Pseudomonas putida BIRD-1 Iron-sulfur cluster-binding protein YP_005930092.1 2563707 R 931281 CDS YP_005930093.1 386011816 12520457 complement(2565232..2565471) 1 NC_017530.1 hypothetical protein 2565471 12520457 PPUBIRD1_2252 Pseudomonas putida BIRD-1 hypothetical protein YP_005930093.1 2565232 R 931281 CDS YP_005930094.1 386011817 12520458 2565641..2566159 1 NC_017530.1 MgtC/SapB transporter 2566159 12520458 PPUBIRD1_2253 Pseudomonas putida BIRD-1 MgtC/SapB transporter YP_005930094.1 2565641 D 931281 CDS YP_005930095.1 386011818 12520459 complement(2566695..2567594) 1 NC_017530.1 Hydroxymethylglutaryl-CoA lyase 2567594 12520459 PPUBIRD1_2254 Pseudomonas putida BIRD-1 Hydroxymethylglutaryl-CoA lyase YP_005930095.1 2566695 R 931281 CDS YP_005930096.1 386011819 12520460 complement(2567614..2568012) 1 NC_017530.1 Transcriptional regulator, putative 2568012 12520460 PPUBIRD1_2255 Pseudomonas putida BIRD-1 Transcriptional regulator, putative YP_005930096.1 2567614 R 931281 CDS YP_005930097.1 386011820 12520461 complement(2568088..2568966) 1 NC_017530.1 AraC family transcriptional regulator 2568966 12520461 PPUBIRD1_2256 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005930097.1 2568088 R 931281 CDS YP_005930098.1 386011821 12520462 2569139..2570326 1 NC_017530.1 4-hydroxybenzoate 3-monooxygenase 2570326 12520462 PPUBIRD1_2257 Pseudomonas putida BIRD-1 4-hydroxybenzoate 3-monooxygenase YP_005930098.1 2569139 D 931281 CDS YP_005930099.1 386011822 12520463 2570477..2572267 1 NC_017530.1 gamma-glutamyltransferase 2572267 12520463 PPUBIRD1_2258 Pseudomonas putida BIRD-1 gamma-glutamyltransferase YP_005930099.1 2570477 D 931281 CDS YP_005930100.1 386011823 12520464 2572312..2573193 1 NC_017530.1 LysR family transcriptional regulator 2573193 12520464 PPUBIRD1_2259 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930100.1 2572312 D 931281 CDS YP_005930101.1 386011824 12520465 complement(2573261..2574313) 1 NC_017530.1 ornithine cyclodeaminase 2574313 12520465 PPUBIRD1_2260 Pseudomonas putida BIRD-1 ornithine cyclodeaminase YP_005930101.1 2573261 R 931281 CDS YP_005930102.1 386011825 12520466 2574501..2574923 1 NC_017530.1 AsnC family transcriptional regulator 2574923 12520466 PPUBIRD1_2261 Pseudomonas putida BIRD-1 AsnC family transcriptional regulator YP_005930102.1 2574501 D 931281 CDS YP_005930103.1 386011826 12520467 complement(2575006..2575605) 1 NC_017530.1 Lipid-binding START domain protein 2575605 12520467 PPUBIRD1_2262 Pseudomonas putida BIRD-1 Lipid-binding START domain protein YP_005930103.1 2575006 R 931281 CDS YP_005930104.1 386011827 12520468 complement(2575695..2576531) 1 NC_017530.1 hypothetical protein 2576531 12520468 PPUBIRD1_2263 Pseudomonas putida BIRD-1 hypothetical protein YP_005930104.1 2575695 R 931281 CDS YP_005930105.1 386011828 12520469 complement(2576665..2578029) 1 NC_017530.1 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein 2578029 12520469 PPUBIRD1_2265 Pseudomonas putida BIRD-1 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein YP_005930105.1 2576665 R 931281 CDS YP_005930106.1 386011829 12520470 complement(2578046..2579026) 1 NC_017530.1 Aliphatic sulfonate ABC transporter periplasmic ligand-binding protein 2579026 12520470 PPUBIRD1_2266 Pseudomonas putida BIRD-1 Aliphatic sulfonate ABC transporter periplasmic ligand-binding protein YP_005930106.1 2578046 R 931281 CDS YP_005930107.1 386011830 12520471 2579304..2579987 1 NC_017530.1 TetR family transcriptional regulator 2579987 12520471 PPUBIRD1_2267 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005930107.1 2579304 D 931281 CDS YP_005930108.1 386011831 12520472 complement(2580024..2581031) 1 NC_017530.1 AraC family transcriptional regulator 2581031 12520472 PPUBIRD1_2268 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005930108.1 2580024 R 931281 CDS YP_005930109.1 386011832 12520473 2581193..2581663 1 NC_017530.1 hypothetical protein 2581663 12520473 PPUBIRD1_2269 Pseudomonas putida BIRD-1 hypothetical protein YP_005930109.1 2581193 D 931281 CDS YP_005930110.1 386011833 12520474 2581766..2581978 1 NC_017530.1 hypothetical protein 2581978 12520474 PPUBIRD1_2270 Pseudomonas putida BIRD-1 hypothetical protein YP_005930110.1 2581766 D 931281 CDS YP_005930111.1 386011834 12520475 complement(2582023..2582349) 1 NC_017530.1 hypothetical protein 2582349 12520475 PPUBIRD1_2271 Pseudomonas putida BIRD-1 hypothetical protein YP_005930111.1 2582023 R 931281 CDS YP_005930112.1 386011835 12520476 2582538..2582960 1 NC_017530.1 endoribonuclease L-PSP 2582960 12520476 PPUBIRD1_2272 Pseudomonas putida BIRD-1 endoribonuclease L-PSP YP_005930112.1 2582538 D 931281 CDS YP_005930113.1 386011836 12520477 2584468..2585340 1 NC_017530.1 hypothetical protein 2585340 12520477 PPUBIRD1_2273 Pseudomonas putida BIRD-1 hypothetical protein YP_005930113.1 2584468 D 931281 CDS YP_005930114.1 386011837 12520478 complement(2585337..2586056) 1 NC_017530.1 hypothetical protein 2586056 12520478 PPUBIRD1_2274 Pseudomonas putida BIRD-1 hypothetical protein YP_005930114.1 2585337 R 931281 CDS YP_005930115.1 386011838 12520479 complement(2586138..2586389) 1 NC_017530.1 hypothetical protein 2586389 12520479 PPUBIRD1_2275 Pseudomonas putida BIRD-1 hypothetical protein YP_005930115.1 2586138 R 931281 CDS YP_005930116.1 386011839 12520480 2586633..2588093 1 NC_017530.1 hypothetical protein 2588093 12520480 PPUBIRD1_2276 Pseudomonas putida BIRD-1 hypothetical protein YP_005930116.1 2586633 D 931281 CDS YP_005930117.1 386011840 12520481 2588090..2588983 1 NC_017530.1 hypothetical protein 2588983 12520481 PPUBIRD1_2277 Pseudomonas putida BIRD-1 hypothetical protein YP_005930117.1 2588090 D 931281 CDS YP_005930118.1 386011841 12520482 complement(2589044..2590000) 1 NC_017530.1 AraC family transcriptional regulator 2590000 12520482 PPUBIRD1_2278 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005930118.1 2589044 R 931281 CDS YP_005930119.1 386011842 12520483 complement(2590149..2592233) 1 NC_017530.1 5-oxoprolinase 2592233 12520483 PPUBIRD1_2279 Pseudomonas putida BIRD-1 5-oxoprolinase YP_005930119.1 2590149 R 931281 CDS YP_005930120.1 386011843 12520484 complement(2592247..2593926) 1 NC_017530.1 hydantoinase B/oxoprolinase 2593926 12520484 PPUBIRD1_2280 Pseudomonas putida BIRD-1 hydantoinase B/oxoprolinase YP_005930120.1 2592247 R 931281 CDS YP_005930121.1 386011844 12520485 complement(2594145..2594999) 1 NC_017530.1 LysR family transcriptional regulator 2594999 12520485 PPUBIRD1_2282 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930121.1 2594145 R 931281 CDS YP_005930122.1 386011845 12520486 2595092..2595520 1 NC_017530.1 Transmembrane pair domain-containing protein 2595520 12520486 PPUBIRD1_2283 Pseudomonas putida BIRD-1 Transmembrane pair domain-containing protein YP_005930122.1 2595092 D 931281 CDS YP_005930123.1 386011846 12520487 complement(2595715..2596734) 1 NC_017530.1 Branched-chain amino acid aminotransferase 2596734 12520487 PPUBIRD1_2284 Pseudomonas putida BIRD-1 Branched-chain amino acid aminotransferase YP_005930123.1 2595715 R 931281 CDS YP_005930124.1 386011847 12520488 complement(2596871..2598448) 1 NC_017530.1 ABC transporter 2598448 12520488 PPUBIRD1_2285 Pseudomonas putida BIRD-1 ABC transporter YP_005930124.1 2596871 R 931281 CDS YP_005930125.1 386011848 12520489 complement(2598620..2598982) 1 NC_017530.1 hypothetical protein 2598982 12520489 PPUBIRD1_2286 Pseudomonas putida BIRD-1 hypothetical protein YP_005930125.1 2598620 R 931281 CDS YP_005930126.1 386011849 12520490 complement(2598979..2599356) 1 NC_017530.1 glyoxalase 2599356 12520490 PPUBIRD1_2287 Pseudomonas putida BIRD-1 glyoxalase YP_005930126.1 2598979 R 931281 CDS YP_005930127.1 386011850 12520491 2599696..2600841 1 NC_017530.1 cobalamin biosynthesis protein CobW; CobW 2600841 cobW 12520491 cobW Pseudomonas putida BIRD-1 CobW YP_005930127.1 2599696 D 931281 CDS YP_005930128.1 386011851 12520492 2600845..2602317 1 NC_017530.1 Aerobic cobaltochelatase subunit cobN; CobN 2602317 cobN 12520492 cobN Pseudomonas putida BIRD-1 CobN YP_005930128.1 2600845 D 931281 CDS YP_005930129.1 386011852 12520493 2602296..2604605 1 NC_017530.1 Aerobic cobaltochelatase subunit cobN; CobN_2 2604605 cobN_2 12520493 cobN_2 Pseudomonas putida BIRD-1 CobN_2 YP_005930129.1 2602296 D 931281 CDS YP_005930130.1 386011853 12520494 2604607..2605620 1 NC_017530.1 magnesium chelatase 2605620 12520494 PPUBIRD1_2291 Pseudomonas putida BIRD-1 magnesium chelatase YP_005930130.1 2604607 D 931281 CDS YP_005930131.1 386011854 12520495 2605698..2606288 1 NC_017530.1 hypothetical protein 2606288 12520495 PPUBIRD1_2292 Pseudomonas putida BIRD-1 hypothetical protein YP_005930131.1 2605698 D 931281 CDS YP_005930132.1 386011855 12520496 complement(2606395..2606661) 1 NC_017530.1 hypothetical protein 2606661 12520496 PPUBIRD1_2293 Pseudomonas putida BIRD-1 hypothetical protein YP_005930132.1 2606395 R 931281 CDS YP_005930133.1 386011856 12520497 2607002..2608327 1 NC_017530.1 Sigma54 specific transcriptional regulator, Fis family 2608327 12520497 PPUBIRD1_2294 Pseudomonas putida BIRD-1 Sigma54 specific transcriptional regulator, Fis family YP_005930133.1 2607002 D 931281 CDS YP_005930134.1 386011857 12520498 complement(2608518..2610518) 1 NC_017530.1 protease ydcP 2610518 12520498 PPUBIRD1_2295 Pseudomonas putida BIRD-1 protease ydcP YP_005930134.1 2608518 R 931281 CDS YP_005930135.1 386011858 12520499 complement(2610733..2611113) 1 NC_017530.1 endoribonuclease L-PSP 2611113 12520499 PPUBIRD1_2296 Pseudomonas putida BIRD-1 endoribonuclease L-PSP YP_005930135.1 2610733 R 931281 CDS YP_005930136.1 386011859 12520500 2611250..2611942 1 NC_017530.1 hypothetical protein 2611942 12520500 PPUBIRD1_2297 Pseudomonas putida BIRD-1 hypothetical protein YP_005930136.1 2611250 D 931281 CDS YP_005930137.1 386011860 12520501 complement(2611944..2612204) 1 NC_017530.1 hypothetical protein 2612204 12520501 PPUBIRD1_2298 Pseudomonas putida BIRD-1 hypothetical protein YP_005930137.1 2611944 R 931281 CDS YP_005930138.1 386011861 12520502 2612324..2613256 1 NC_017530.1 LysR family transcriptional regulator 2613256 12520502 PPUBIRD1_2299 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930138.1 2612324 D 931281 CDS YP_005930139.1 386011862 12520503 complement(2613373..2614524) 1 NC_017530.1 acyl-CoA dehydrogenase domain-containing protein; AcdA 2614524 acdA 12520503 acdA Pseudomonas putida BIRD-1 AcdA YP_005930139.1 2613373 R 931281 CDS YP_005930140.1 386011863 12520504 complement(2614541..2615614) 1 NC_017530.1 Enoyl-CoA hydratase/isomerase 2615614 12520504 PPUBIRD1_2301 Pseudomonas putida BIRD-1 Enoyl-CoA hydratase/isomerase YP_005930140.1 2614541 R 931281 CDS YP_005930141.1 386011864 12520505 2615943..2621807 1 NC_017530.1 hypothetical protein 2621807 12520505 PPUBIRD1_2303 Pseudomonas putida BIRD-1 hypothetical protein YP_005930141.1 2615943 D 931281 CDS YP_005930142.1 386011865 12520506 2621826..2623802 1 NC_017530.1 hypothetical protein 2623802 12520506 PPUBIRD1_2304 Pseudomonas putida BIRD-1 hypothetical protein YP_005930142.1 2621826 D 931281 CDS YP_005930143.1 386011866 12520507 2623799..2624455 1 NC_017530.1 Electron transport protein SCO1/SenC 2624455 12520507 PPUBIRD1_2305 Pseudomonas putida BIRD-1 Electron transport protein SCO1/SenC YP_005930143.1 2623799 D 931281 CDS YP_005930144.1 386011867 12520508 2624452..2625117 1 NC_017530.1 Electron transport protein SCO1/SenC 2625117 12520508 PPUBIRD1_2306 Pseudomonas putida BIRD-1 Electron transport protein SCO1/SenC YP_005930144.1 2624452 D 931281 CDS YP_005930145.1 386011868 12520509 2625312..2626802 1 NC_017530.1 Cytochrome c, putative 2626802 12520509 PPUBIRD1_2307 Pseudomonas putida BIRD-1 Cytochrome c, putative YP_005930145.1 2625312 D 931281 CDS YP_005930146.1 386011869 12520510 2626815..2627456 1 NC_017530.1 SurA domain-containing protein 2627456 12520510 PPUBIRD1_2308 Pseudomonas putida BIRD-1 SurA domain-containing protein YP_005930146.1 2626815 D 931281 CDS YP_005930147.1 386011870 12520511 2627604..2628239 1 NC_017530.1 Response regulator receiver protein 2628239 12520511 PPUBIRD1_2309 Pseudomonas putida BIRD-1 Response regulator receiver protein YP_005930147.1 2627604 D 931281 CDS YP_005930148.1 386011871 12520512 2628423..2630096 1 NC_017530.1 Type II secretion system protein E 2630096 12520512 PPUBIRD1_2310 Pseudomonas putida BIRD-1 Type II secretion system protein E YP_005930148.1 2628423 D 931281 CDS YP_005930149.1 386011872 12520513 2630080..2630859 1 NC_017530.1 hypothetical protein 2630859 12520513 PPUBIRD1_2311 Pseudomonas putida BIRD-1 hypothetical protein YP_005930149.1 2630080 D 931281 CDS YP_005930150.1 386011873 12520514 2630861..2631403 1 NC_017530.1 hypothetical protein 2631403 12520514 PPUBIRD1_2312 Pseudomonas putida BIRD-1 hypothetical protein YP_005930150.1 2630861 D 931281 CDS YP_005930151.1 386011874 12520515 2631390..2631953 1 NC_017530.1 hypothetical protein 2631953 12520515 PPUBIRD1_2313 Pseudomonas putida BIRD-1 hypothetical protein YP_005930151.1 2631390 D 931281 CDS YP_005930152.1 386011875 12520516 2631953..2632459 1 NC_017530.1 hypothetical protein 2632459 12520516 PPUBIRD1_2314 Pseudomonas putida BIRD-1 hypothetical protein YP_005930152.1 2631953 D 931281 CDS YP_005930153.1 386011876 12520517 2632456..2634321 1 NC_017530.1 Type II and III secretion system protein 2634321 12520517 PPUBIRD1_2315 Pseudomonas putida BIRD-1 Type II and III secretion system protein YP_005930153.1 2632456 D 931281 CDS YP_005930154.1 386011877 12520518 2634318..2634797 1 NC_017530.1 Type II secretory pathway pseudopilin PulG-like protein 2634797 12520518 PPUBIRD1_2316 Pseudomonas putida BIRD-1 Type II secretory pathway pseudopilin PulG-like protein YP_005930154.1 2634318 D 931281 CDS YP_005930155.1 386011878 12520519 2634803..2635177 1 NC_017530.1 Type II secretion system protein G 2635177 12520519 PPUBIRD1_2317 Pseudomonas putida BIRD-1 Type II secretion system protein G YP_005930155.1 2634803 D 931281 CDS YP_005930156.1 386011879 12520520 2635152..2635679 1 NC_017530.1 hypothetical protein 2635679 12520520 PPUBIRD1_2318 Pseudomonas putida BIRD-1 hypothetical protein YP_005930156.1 2635152 D 931281 CDS YP_005930157.1 386011880 12520521 2635676..2636077 1 NC_017530.1 curli assembly protein CsgE 2636077 12520521 PPUBIRD1_2319 Pseudomonas putida BIRD-1 curli assembly protein CsgE YP_005930157.1 2635676 D 931281 CDS YP_005930158.1 386011881 12520522 2636074..2636487 1 NC_017530.1 curli production assembly/transport component CsgF precursor; CsmF 2636487 csmF 12520522 csmF Pseudomonas putida BIRD-1 CsmF YP_005930158.1 2636074 D 931281 CDS YP_005930159.1 386011882 12520523 2636522..2637373 1 NC_017530.1 curli production assembly/transport component CsgG 2637373 12520523 PPUBIRD1_2321 Pseudomonas putida BIRD-1 curli production assembly/transport component CsgG YP_005930159.1 2636522 D 931281 CDS YP_005930160.1 386011883 12520524 2640188..2642098 1 NC_017530.1 Fis family GAF modulated sigma54 specific transcriptional regulator 2642098 12520524 PPUBIRD1_2322 Pseudomonas putida BIRD-1 Fis family GAF modulated sigma54 specific transcriptional regulator YP_005930160.1 2640188 D 931281 CDS YP_005930161.1 386011884 12520525 2642100..2643833 1 NC_017530.1 ABC transporter 2643833 12520525 PPUBIRD1_2323 Pseudomonas putida BIRD-1 ABC transporter YP_005930161.1 2642100 D 931281 CDS YP_005930162.1 386011885 12520526 2643823..2644500 1 NC_017530.1 hypothetical protein 2644500 12520526 PPUBIRD1_2324 Pseudomonas putida BIRD-1 hypothetical protein YP_005930162.1 2643823 D 931281 CDS YP_005930163.1 386011886 12520527 2644511..2645785 1 NC_017530.1 FAD dependent oxidoreductase 2645785 12520527 PPUBIRD1_2325 Pseudomonas putida BIRD-1 FAD dependent oxidoreductase YP_005930163.1 2644511 D 931281 CDS YP_005930164.1 386011887 12520528 complement(2645920..2647233) 1 NC_017530.1 hypothetical protein 2647233 12520528 PPUBIRD1_2326 Pseudomonas putida BIRD-1 hypothetical protein YP_005930164.1 2645920 R 931281 CDS YP_005930165.1 386011888 12520529 complement(2647373..2648866) 1 NC_017530.1 Aldehyde dehydrogenase 2648866 12520529 PPUBIRD1_2327 Pseudomonas putida BIRD-1 Aldehyde dehydrogenase YP_005930165.1 2647373 R 931281 CDS YP_005930166.1 386011889 12520530 complement(2649167..2649295) 1 NC_017530.1 hypothetical protein 2649295 12520530 PPUBIRD1_2329 Pseudomonas putida BIRD-1 hypothetical protein YP_005930166.1 2649167 R 931281 CDS YP_005930167.1 386011890 12520531 2649269..2650834 1 NC_017530.1 hypothetical protein 2650834 12520531 PPUBIRD1_2330 Pseudomonas putida BIRD-1 hypothetical protein YP_005930167.1 2649269 D 931281 CDS YP_005930168.1 386011891 12520532 2650883..2652313 1 NC_017530.1 radical SAM protein 2652313 12520532 PPUBIRD1_2331 Pseudomonas putida BIRD-1 radical SAM protein YP_005930168.1 2650883 D 931281 CDS YP_005930169.1 386011892 12520533 2652315..2652638 1 NC_017530.1 hypothetical protein 2652638 12520533 PPUBIRD1_2332 Pseudomonas putida BIRD-1 hypothetical protein YP_005930169.1 2652315 D 931281 CDS YP_005930170.1 386011893 12520534 2652670..2653791 1 NC_017530.1 hypothetical protein 2653791 12520534 PPUBIRD1_2333 Pseudomonas putida BIRD-1 hypothetical protein YP_005930170.1 2652670 D 931281 CDS YP_005930171.1 386011894 12520535 2653926..2655599 1 NC_017530.1 Acyl-CoA synthetase 2655599 12520535 PPUBIRD1_2334 Pseudomonas putida BIRD-1 Acyl-CoA synthetase YP_005930171.1 2653926 D 931281 CDS YP_005930172.1 386011895 12520536 complement(2655934..2656509) 1 NC_017530.1 Probable molybdopterin-guanine dinucleotide biosynthesis protein A; protein MobA 2656509 mobA 12520536 mobA Pseudomonas putida BIRD-1 protein MobA YP_005930172.1 2655934 R 931281 CDS YP_005930173.1 386011896 12520537 complement(2656571..2659699) 1 NC_017530.1 Toluene efflux pump membrane transporter ttgB 2659699 12520537 PPUBIRD1_2336 Pseudomonas putida BIRD-1 Toluene efflux pump membrane transporter ttgB YP_005930173.1 2656571 R 931281 CDS YP_005930174.1 386011897 12520538 complement(2659711..2660844) 1 NC_017530.1 Efflux transporter, RND family, MFP subunit 2660844 12520538 PPUBIRD1_2337 Pseudomonas putida BIRD-1 Efflux transporter, RND family, MFP subunit YP_005930174.1 2659711 R 931281 CDS YP_005930175.1 386011898 12520539 2660994..2661833 1 NC_017530.1 Winged helix family two component transcriptional regulator 2661833 12520539 PPUBIRD1_2338 Pseudomonas putida BIRD-1 Winged helix family two component transcriptional regulator YP_005930175.1 2660994 D 931281 CDS YP_005930176.1 386011899 12520540 2661840..2663141 1 NC_017530.1 Integral membrane sensor signal transduction histidine kinase 2663141 12520540 PPUBIRD1_2339 Pseudomonas putida BIRD-1 Integral membrane sensor signal transduction histidine kinase YP_005930176.1 2661840 D 931281 CDS YP_005930177.1 386011900 12520541 complement(2663172..2664263) 1 NC_017530.1 diguanylate cyclase 2664263 12520541 PPUBIRD1_2340 Pseudomonas putida BIRD-1 diguanylate cyclase YP_005930177.1 2663172 R 931281 CDS YP_005930178.1 386011901 12520542 complement(2664388..2665227) 1 NC_017530.1 hypothetical protein 2665227 12520542 PPUBIRD1_2341 Pseudomonas putida BIRD-1 hypothetical protein YP_005930178.1 2664388 R 931281 CDS YP_005930179.1 386011902 12520543 complement(2665227..2668232) 1 NC_017530.1 Bacteriophage N4 receptor, outer membrane subunit 2668232 12520543 PPUBIRD1_2342 Pseudomonas putida BIRD-1 Bacteriophage N4 receptor, outer membrane subunit YP_005930179.1 2665227 R 931281 CDS YP_005930180.1 386011903 12520544 complement(2668229..2670403) 1 NC_017530.1 bacteriophage N4 adsorption protein B; NfrB 2670403 nfrB 12520544 nfrB Pseudomonas putida BIRD-1 NfrB YP_005930180.1 2668229 R 931281 CDS YP_005930181.1 386011904 12520545 2670596..2671027 1 NC_017530.1 Transmembrane pair domain protein 2671027 12520545 PPUBIRD1_2344 Pseudomonas putida BIRD-1 Transmembrane pair domain protein YP_005930181.1 2670596 D 931281 CDS YP_005930182.1 386011905 12520546 2671209..2672768 1 NC_017530.1 threonine dehydratase; protein IlvA 2672768 ilvA 12520546 ilvA Pseudomonas putida BIRD-1 protein IlvA YP_005930182.1 2671209 D 931281 CDS YP_005930183.1 386011906 12520547 complement(2672890..2674071) 1 NC_017530.1 hypothetical protein 2674071 12520547 PPUBIRD1_2346 Pseudomonas putida BIRD-1 hypothetical protein YP_005930183.1 2672890 R 931281 CDS YP_005930184.1 386011907 12520548 complement(2674123..2674602) 1 NC_017530.1 Glyoxalase/bleomycin resistance protein/dioxygenase 2674602 12520548 PPUBIRD1_2347 Pseudomonas putida BIRD-1 Glyoxalase/bleomycin resistance protein/dioxygenase YP_005930184.1 2674123 R 931281 CDS YP_005930185.1 386011908 12520549 complement(2674713..2676332) 1 NC_017530.1 Glyceraldehyde-3-phosphate dehydrogenase, putative 2676332 12520549 PPUBIRD1_2348 Pseudomonas putida BIRD-1 Glyceraldehyde-3-phosphate dehydrogenase, putative YP_005930185.1 2674713 R 931281 CDS YP_005930186.1 386011909 12520550 2676331..2676483 1 NC_017530.1 hypothetical protein 2676483 12520550 PPUBIRD1_2349 Pseudomonas putida BIRD-1 hypothetical protein YP_005930186.1 2676331 D 931281 CDS YP_005930187.1 386011910 12520551 2676789..2677943 1 NC_017530.1 hypothetical protein 2677943 12520551 PPUBIRD1_2350 Pseudomonas putida BIRD-1 hypothetical protein YP_005930187.1 2676789 D 931281 CDS YP_005930188.1 386011911 12520552 2678016..2679134 1 NC_017530.1 hypothetical protein 2679134 12520552 PPUBIRD1_2351 Pseudomonas putida BIRD-1 hypothetical protein YP_005930188.1 2678016 D 931281 CDS YP_005930189.1 386011912 12520553 complement(2679995..2680576) 1 NC_017530.1 Lysine exporter protein LysE/YggA 2680576 12520553 PPUBIRD1_2352 Pseudomonas putida BIRD-1 Lysine exporter protein LysE/YggA YP_005930189.1 2679995 R 931281 CDS YP_005930190.1 386011913 12520554 2680868..2682439 1 NC_017530.1 hypothetical protein 2682439 12520554 PPUBIRD1_2353 Pseudomonas putida BIRD-1 hypothetical protein YP_005930190.1 2680868 D 931281 CDS YP_005930191.1 386011914 12520555 complement(2683323..2684909) 1 NC_017530.1 Diguanylate phosphodiesterase 2684909 12520555 PPUBIRD1_2354 Pseudomonas putida BIRD-1 Diguanylate phosphodiesterase YP_005930191.1 2683323 R 931281 CDS YP_005930192.1 386011915 12520556 2685208..2686284 1 NC_017530.1 4-hydroxyphenylpyruvate dioxygenase 2686284 12520556 PPUBIRD1_2355 Pseudomonas putida BIRD-1 4-hydroxyphenylpyruvate dioxygenase YP_005930192.1 2685208 D 931281 CDS YP_005930193.1 386011916 12520557 complement(2686308..2687114) 1 NC_017530.1 hypothetical protein 2687114 12520557 PPUBIRD1_2356 Pseudomonas putida BIRD-1 hypothetical protein YP_005930193.1 2686308 R 931281 CDS YP_005930194.1 386011917 12520558 complement(2687244..2687930) 1 NC_017530.1 ThiJ/PfpI domain-containing protein 2687930 12520558 PPUBIRD1_2357 Pseudomonas putida BIRD-1 ThiJ/PfpI domain-containing protein YP_005930194.1 2687244 R 931281 CDS YP_005930195.1 386011918 12520559 2688071..2690188 1 NC_017530.1 PAS/PAC sensor hybrid histidine kinase 2690188 12520559 PPUBIRD1_2358 Pseudomonas putida BIRD-1 PAS/PAC sensor hybrid histidine kinase YP_005930195.1 2688071 D 931281 CDS YP_005930196.1 386011919 12520560 complement(2690195..2691811) 1 NC_017530.1 Histidine kinase 2691811 12520560 PPUBIRD1_2359 Pseudomonas putida BIRD-1 Histidine kinase YP_005930196.1 2690195 R 931281 CDS YP_005930197.1 386011920 12520561 complement(2691890..2692945) 1 NC_017530.1 hypothetical protein 2692945 12520561 PPUBIRD1_2360 Pseudomonas putida BIRD-1 hypothetical protein YP_005930197.1 2691890 R 931281 CDS YP_005930198.1 386011921 12520562 complement(2693170..2694585) 1 NC_017530.1 RND efflux system outer membrane lipoprotein 2694585 12520562 PPUBIRD1_2361 Pseudomonas putida BIRD-1 RND efflux system outer membrane lipoprotein YP_005930198.1 2693170 R 931281 CDS YP_005930199.1 386011922 12520563 complement(2694582..2697761) 1 NC_017530.1 Efflux pump membrane transporter bepE; MexF 2697761 mexF 12520563 mexF Pseudomonas putida BIRD-1 MexF YP_005930199.1 2694582 R 931281 CDS YP_005930200.1 386011923 12520564 complement(2697774..2699015) 1 NC_017530.1 efflux transporter, RND family, MFP subunit; MexE 2699015 mexE 12520564 mexE Pseudomonas putida BIRD-1 MexE YP_005930200.1 2697774 R 931281 CDS YP_005930201.1 386011924 12520565 complement(2699207..2700397) 1 NC_017530.1 Type II secretion system protein 2700397 12520565 PPUBIRD1_2364 Pseudomonas putida BIRD-1 Type II secretion system protein YP_005930201.1 2699207 R 931281 CDS YP_005930202.1 386011925 12520566 complement(2700409..2700834) 1 NC_017530.1 general secretion pathway protein G; XcpT 2700834 xcpT 12520566 xcpT Pseudomonas putida BIRD-1 XcpT YP_005930202.1 2700409 R 931281 CDS YP_005930203.1 386011926 12520567 2701020..2701613 1 NC_017530.1 lytic transglycosylase 2701613 12520567 PPUBIRD1_2366 Pseudomonas putida BIRD-1 lytic transglycosylase YP_005930203.1 2701020 D 931281 CDS YP_005930204.1 386011927 12520568 2701788..2703239 1 NC_017530.1 Sensor histidine kinase 2703239 12520568 PPUBIRD1_2367 Pseudomonas putida BIRD-1 Sensor histidine kinase YP_005930204.1 2701788 D 931281 CDS YP_005930205.1 386011928 12520569 2703546..2705039 1 NC_017530.1 Integral membrane sensor signal transduction histidine kinase 2705039 12520569 PPUBIRD1_2369 Pseudomonas putida BIRD-1 Integral membrane sensor signal transduction histidine kinase YP_005930205.1 2703546 D 931281 CDS YP_005930206.1 386011929 12520570 2705008..2706435 1 NC_017530.1 Two component, sigma54 specific, transcriptional regulator, Fis family 2706435 12520570 PPUBIRD1_2370 Pseudomonas putida BIRD-1 Two component, sigma54 specific, transcriptional regulator, Fis family YP_005930206.1 2705008 D 931281 CDS YP_005930207.1 386011930 12520571 complement(2706450..2706752) 1 NC_017530.1 hypothetical protein 2706752 12520571 PPUBIRD1_2371 Pseudomonas putida BIRD-1 hypothetical protein YP_005930207.1 2706450 R 931281 CDS YP_005930208.1 386011931 12520572 complement(2706840..2708192) 1 NC_017530.1 gluconate transporter; GntP protein 2708192 gntP 12520572 gntP Pseudomonas putida BIRD-1 GntP protein YP_005930208.1 2706840 R 931281 CDS YP_005930209.1 386011932 12520573 complement(2708307..2708846) 1 NC_017530.1 Carbohydrate kinase 2708846 12520573 PPUBIRD1_2373 Pseudomonas putida BIRD-1 Carbohydrate kinase YP_005930209.1 2708307 R 931281 CDS YP_005930210.1 386011933 12520574 2709053..2710072 1 NC_017530.1 LacI family transcriptional regulator 2710072 12520574 PPUBIRD1_2374 Pseudomonas putida BIRD-1 LacI family transcriptional regulator YP_005930210.1 2709053 D 931281 CDS YP_005930211.1 386011934 12520575 2710307..2711626 1 NC_017530.1 methyl-accepting chemotaxis sensory transducer 2711626 12520575 PPUBIRD1_2375 Pseudomonas putida BIRD-1 methyl-accepting chemotaxis sensory transducer YP_005930211.1 2710307 D 931281 CDS YP_005930212.1 386011935 12520576 complement(2711592..2714873) 1 NC_017530.1 Hpt sensor hybrid histidine kinase 2714873 12520576 PPUBIRD1_2376 Pseudomonas putida BIRD-1 Hpt sensor hybrid histidine kinase YP_005930212.1 2711592 R 931281 CDS YP_005930213.1 386011936 12520577 complement(2714887..2715501) 1 NC_017530.1 LuxR family DNA-binding response regulator 2715501 12520577 PPUBIRD1_2377 Pseudomonas putida BIRD-1 LuxR family DNA-binding response regulator YP_005930213.1 2714887 R 931281 CDS YP_005930214.1 386011937 12520578 complement(2716031..2716783) 1 NC_017530.1 precorrin-4 C11-methyltransferase; protein CobM 2716783 cobM 12520578 cobM Pseudomonas putida BIRD-1 protein CobM YP_005930214.1 2716031 R 931281 CDS YP_005930215.1 386011938 12520579 complement(2716818..2717204) 1 NC_017530.1 Cobalamin biosynthesis protein cobE, putative 2717204 12520579 PPUBIRD1_2379 Pseudomonas putida BIRD-1 Cobalamin biosynthesis protein cobE, putative YP_005930215.1 2716818 R 931281 CDS YP_005930216.1 386011939 12520580 complement(2717204..2717890) 1 NC_017530.1 Cobalt transporter, subunit CbtA 2717890 12520580 PPUBIRD1_2380 Pseudomonas putida BIRD-1 Cobalt transporter, subunit CbtA YP_005930216.1 2717204 R 931281 CDS YP_005930217.1 386011940 12520581 complement(2717900..2718088) 1 NC_017530.1 Cobalt transporter, subunit CbtB 2718088 12520581 PPUBIRD1_2381 Pseudomonas putida BIRD-1 Cobalt transporter, subunit CbtB YP_005930217.1 2717900 R 931281 CDS YP_005930218.1 386011941 12520582 complement(2718526..2719005) 1 NC_017530.1 Acetyltransferase 2719005 12520582 PPUBIRD1_2382 Pseudomonas putida BIRD-1 Acetyltransferase YP_005930218.1 2718526 R 931281 CDS YP_005930219.1 386011942 12520583 2719130..2719759 1 NC_017530.1 Lysine exporter protein LysE/YggA 2719759 12520583 PPUBIRD1_2383 Pseudomonas putida BIRD-1 Lysine exporter protein LysE/YggA YP_005930219.1 2719130 D 931281 CDS YP_005930220.1 386011943 12520584 2719781..2720653 1 NC_017530.1 Alpha/beta hydrolase fold project 2720653 12520584 PPUBIRD1_2384 Pseudomonas putida BIRD-1 Alpha/beta hydrolase fold project YP_005930220.1 2719781 D 931281 CDS YP_005930221.1 386011944 12520585 2720750..2721637 1 NC_017530.1 Pirin domain-containing protein 2721637 12520585 PPUBIRD1_2385 Pseudomonas putida BIRD-1 Pirin domain-containing protein YP_005930221.1 2720750 D 931281 CDS YP_005930222.1 386011945 12520586 2721965..2722195 1 NC_017530.1 hypothetical protein 2722195 12520586 PPUBIRD1_2386 Pseudomonas putida BIRD-1 hypothetical protein YP_005930222.1 2721965 D 931281 CDS YP_005930223.1 386011946 12520587 complement(2722216..2722830) 1 NC_017530.1 hypothetical protein 2722830 12520587 PPUBIRD1_2387 Pseudomonas putida BIRD-1 hypothetical protein YP_005930223.1 2722216 R 931281 CDS YP_005930224.1 386011947 12520588 complement(2722917..2723204) 1 NC_017530.1 hypothetical protein 2723204 12520588 PPUBIRD1_2388 Pseudomonas putida BIRD-1 hypothetical protein YP_005930224.1 2722917 R 931281 CDS YP_005930225.1 386011948 12520589 complement(2723374..2724051) 1 NC_017530.1 2OG-Fe(II) oxygenase 2724051 12520589 PPUBIRD1_2390 Pseudomonas putida BIRD-1 2OG-Fe(II) oxygenase YP_005930225.1 2723374 R 931281 CDS YP_005930226.1 386011949 12520590 complement(2724180..2725625) 1 NC_017530.1 Curlin-associated protein 2725625 12520590 PPUBIRD1_2391 Pseudomonas putida BIRD-1 Curlin-associated protein YP_005930226.1 2724180 R 931281 CDS YP_005930227.1 386011950 12520591 complement(2725642..2726115) 1 NC_017530.1 Curlin-associated protein 2726115 12520591 PPUBIRD1_2392 Pseudomonas putida BIRD-1 Curlin-associated protein YP_005930227.1 2725642 R 931281 CDS YP_005930228.1 386011951 12520592 complement(2726131..2728362) 1 NC_017530.1 hypothetical protein 2728362 12520592 PPUBIRD1_2393 Pseudomonas putida BIRD-1 hypothetical protein YP_005930228.1 2726131 R 931281 CDS YP_005930229.1 386011952 12520593 complement(2728395..2729723) 1 NC_017530.1 hypothetical protein 2729723 12520593 PPUBIRD1_2394 Pseudomonas putida BIRD-1 hypothetical protein YP_005930229.1 2728395 R 931281 CDS YP_005930230.1 386011953 12520594 complement(2729917..2730477) 1 NC_017530.1 PAP2 (acid phosphatase) superfamily protein-like protein 2730477 12520594 PPUBIRD1_2395 Pseudomonas putida BIRD-1 PAP2 (acid phosphatase) superfamily protein-like protein YP_005930230.1 2729917 R 931281 CDS YP_005930231.1 386011954 12520595 complement(2730528..2730713) 1 NC_017530.1 Putative phosphohistidine phosphatase, SixA 2730713 12520595 PPUBIRD1_2396 Pseudomonas putida BIRD-1 Putative phosphohistidine phosphatase, SixA YP_005930231.1 2730528 R 931281 CDS YP_005930232.1 386011955 12520596 2730987..2731733 1 NC_017530.1 Gluconate 2-dehydrogenase acceptor subunit 2731733 12520596 PPUBIRD1_2397 Pseudomonas putida BIRD-1 Gluconate 2-dehydrogenase acceptor subunit YP_005930232.1 2730987 D 931281 CDS YP_005930233.1 386011956 12520597 2731746..2733521 1 NC_017530.1 Gluconate 2-dehydrogenase flavoprotein 2733521 12520597 PPUBIRD1_2398 Pseudomonas putida BIRD-1 Gluconate 2-dehydrogenase flavoprotein YP_005930233.1 2731746 D 931281 CDS YP_005930234.1 386011957 12520598 2733534..2734781 1 NC_017530.1 Gluconate 2-dehydrogenase acceptor subunit 2734781 12520598 PPUBIRD1_2399 Pseudomonas putida BIRD-1 Gluconate 2-dehydrogenase acceptor subunit YP_005930234.1 2733534 D 931281 CDS YP_005930235.1 386011958 12520599 2735046..2736065 1 NC_017530.1 transcriptional regulator PtxS; PtxS 2736065 ptxS 12520599 ptxS Pseudomonas putida BIRD-1 PtxS YP_005930235.1 2735046 D 931281 CDS YP_005930236.1 386011959 12520600 2736130..2736909 1 NC_017530.1 xylose isomerase domain-containing protein 2736909 12520600 PPUBIRD1_2401 Pseudomonas putida BIRD-1 xylose isomerase domain-containing protein YP_005930236.1 2736130 D 931281 CDS YP_005930237.1 386011960 12520601 2736902..2737852 1 NC_017530.1 Ribokinase-like domain-containing protein 2737852 12520601 PPUBIRD1_2402 Pseudomonas putida BIRD-1 Ribokinase-like domain-containing protein YP_005930237.1 2736902 D 931281 CDS YP_005930238.1 386011961 12520602 2737908..2739200 1 NC_017530.1 Major facilitator transporter 2739200 12520602 PPUBIRD1_2403 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005930238.1 2737908 D 931281 CDS YP_005930239.1 386011962 12520603 2739211..2740173 1 NC_017530.1 bifunctional; gluconate 2-dehydrogenase 2740173 12520603 PPUBIRD1_2404 Pseudomonas putida BIRD-1 gluconate 2-dehydrogenase YP_005930239.1 2739211 D 931281 CDS YP_005930240.1 386011963 12520604 complement(2740216..2741181) 1 NC_017530.1 deoxyribonuclease I; EndA 2741181 endA 12520604 endA Pseudomonas putida BIRD-1 EndA YP_005930240.1 2740216 R 931281 CDS YP_005930241.1 386011964 12520605 complement(2741196..2741579) 1 NC_017530.1 hypothetical protein 2741579 12520605 PPUBIRD1_2406 Pseudomonas putida BIRD-1 hypothetical protein YP_005930241.1 2741196 R 931281 CDS YP_005930242.1 386011965 12520606 complement(2741707..2744070) 1 NC_017530.1 Surface antigen (D15) 2744070 12520606 PPUBIRD1_2407 Pseudomonas putida BIRD-1 Surface antigen (D15) YP_005930242.1 2741707 R 931281 CDS YP_005930243.1 386011966 12520607 2744268..2744960 1 NC_017530.1 Two component transcriptional regulator 2744960 12520607 PPUBIRD1_2408 Pseudomonas putida BIRD-1 Two component transcriptional regulator YP_005930243.1 2744268 D 931281 CDS YP_005930244.1 386011967 12520608 2744957..2746219 1 NC_017530.1 Integral membrane sensor signal transduction histidine kinase 2746219 12520608 PPUBIRD1_2409 Pseudomonas putida BIRD-1 Integral membrane sensor signal transduction histidine kinase YP_005930244.1 2744957 D 931281 CDS YP_005930245.1 386011968 12520609 complement(2746212..2747207) 1 NC_017530.1 Aldo/keto reductase family oxidoreductase 2747207 12520609 PPUBIRD1_2410 Pseudomonas putida BIRD-1 Aldo/keto reductase family oxidoreductase YP_005930245.1 2746212 R 931281 CDS YP_005930246.1 386011969 12520610 complement(2747304..2748155) 1 NC_017530.1 LysR family transcriptional regulator 2748155 12520610 PPUBIRD1_2411 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930246.1 2747304 R 931281 CDS YP_005930247.1 386011970 12520611 complement(2748218..2749339) 1 NC_017530.1 Major facilitator family transporter 2749339 12520611 PPUBIRD1_2412 Pseudomonas putida BIRD-1 Major facilitator family transporter YP_005930247.1 2748218 R 931281 CDS YP_005930248.1 386011971 12520612 2749666..2750325 1 NC_017530.1 hypothetical protein 2750325 12520612 PPUBIRD1_2413 Pseudomonas putida BIRD-1 hypothetical protein YP_005930248.1 2749666 D 931281 CDS YP_005930249.1 386011972 12520613 complement(2750310..2751191) 1 NC_017530.1 LysR family transcriptional regulator 2751191 12520613 PPUBIRD1_2414 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930249.1 2750310 R 931281 CDS YP_005930250.1 386011973 12520614 2751377..2752657 1 NC_017530.1 Acetolactate synthase 2752657 12520614 PPUBIRD1_2415 Pseudomonas putida BIRD-1 Acetolactate synthase YP_005930250.1 2751377 D 931281 CDS YP_005930251.1 386011974 12520615 2752636..2753019 1 NC_017530.1 Acetolactate synthase 2753019 12520615 PPUBIRD1_2416 Pseudomonas putida BIRD-1 Acetolactate synthase YP_005930251.1 2752636 D 931281 CDS YP_005930252.1 386011975 12520616 complement(2753146..2755689) 1 NC_017530.1 Putative GAF sensor protein 2755689 12520616 PPUBIRD1_2417 Pseudomonas putida BIRD-1 Putative GAF sensor protein YP_005930252.1 2753146 R 931281 CDS YP_005930253.1 386011976 12520617 2755917..2756534 1 NC_017530.1 hypothetical protein 2756534 12520617 PPUBIRD1_2419 Pseudomonas putida BIRD-1 hypothetical protein YP_005930253.1 2755917 D 931281 CDS YP_005930254.1 386011977 12520618 complement(2756575..2757015) 1 NC_017530.1 AsnC family transcriptional regulator 2757015 12520618 PPUBIRD1_2420 Pseudomonas putida BIRD-1 AsnC family transcriptional regulator YP_005930254.1 2756575 R 931281 CDS YP_005930255.1 386011978 12520619 2757192..2760206 1 NC_017530.1 hypothetical protein 2760206 12520619 PPUBIRD1_2421 Pseudomonas putida BIRD-1 hypothetical protein YP_005930255.1 2757192 D 931281 CDS YP_005930256.1 386011979 12520620 complement(2760284..2761408) 1 NC_017530.1 hypothetical protein 2761408 12520620 PPUBIRD1_2422 Pseudomonas putida BIRD-1 hypothetical protein YP_005930256.1 2760284 R 931281 CDS YP_005930257.1 386011980 12520621 complement(2761712..2762743) 1 NC_017530.1 diguanylate cyclase 2762743 12520621 PPUBIRD1_2424 Pseudomonas putida BIRD-1 diguanylate cyclase YP_005930257.1 2761712 R 931281 CDS YP_005930258.1 386011981 12520622 complement(2763111..2763503) 1 NC_017530.1 TonB-dependent receptor 2763503 12520622 PPUBIRD1_2425 Pseudomonas putida BIRD-1 TonB-dependent receptor YP_005930258.1 2763111 R 931281 CDS YP_005930259.1 386011982 12520623 complement(2763535..2765688) 1 NC_017530.1 TonB-dependent siderophore receptor 2765688 12520623 PPUBIRD1_2426 Pseudomonas putida BIRD-1 TonB-dependent siderophore receptor YP_005930259.1 2763535 R 931281 CDS YP_005930260.1 386011983 12520624 complement(2765760..2766110) 1 NC_017530.1 hypothetical protein 2766110 12520624 PPUBIRD1_2427 Pseudomonas putida BIRD-1 hypothetical protein YP_005930260.1 2765760 R 931281 CDS YP_005930261.1 386011984 12520625 complement(2766575..2767447) 1 NC_017530.1 LysR family transcriptional regulator 2767447 12520625 PPUBIRD1_2428 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930261.1 2766575 R 931281 CDS YP_005930262.1 386011985 12520626 2767657..2767962 1 NC_017530.1 Ring-cleaving dioxygenase, putative 2767962 12520626 PPUBIRD1_2429 Pseudomonas putida BIRD-1 Ring-cleaving dioxygenase, putative YP_005930262.1 2767657 D 931281 CDS YP_005930263.1 386011986 12520627 2768178..2769437 1 NC_017530.1 Sodium:dicarboxylate symporter 2769437 12520627 PPUBIRD1_2430 Pseudomonas putida BIRD-1 Sodium:dicarboxylate symporter YP_005930263.1 2768178 D 931281 CDS YP_005930264.1 386011987 12520628 complement(2769569..2770291) 1 NC_017530.1 hypothetical protein 2770291 12520628 PPUBIRD1_2431 Pseudomonas putida BIRD-1 hypothetical protein YP_005930264.1 2769569 R 931281 CDS YP_005930265.1 386011988 12520629 complement(2770306..2772396) 1 NC_017530.1 Outer membrane ferric siderophore receptor, putative 2772396 12520629 PPUBIRD1_2432 Pseudomonas putida BIRD-1 Outer membrane ferric siderophore receptor, putative YP_005930265.1 2770306 R 931281 CDS YP_005930266.1 386011989 12520630 complement(2772534..2773451) 1 NC_017530.1 GTP cyclohydrolase folE2 2773451 12520630 PPUBIRD1_2433 Pseudomonas putida BIRD-1 GTP cyclohydrolase folE2 YP_005930266.1 2772534 R 931281 CDS YP_005930267.1 386011990 12520631 complement(2774044..2775363) 1 NC_017530.1 OprD family outer membrane porin 2775363 12520631 PPUBIRD1_2434 Pseudomonas putida BIRD-1 OprD family outer membrane porin YP_005930267.1 2774044 R 931281 CDS YP_005930268.1 386011991 12520632 complement(2775456..2775968) 1 NC_017530.1 hypothetical protein 2775968 12520632 PPUBIRD1_2435 Pseudomonas putida BIRD-1 hypothetical protein YP_005930268.1 2775456 R 931281 CDS YP_005930269.1 386011992 12520633 2776277..2777923 1 NC_017530.1 medium-chain-fatty-acid-CoA ligase; AlkK 2777923 alkK 12520633 alkK Pseudomonas putida BIRD-1 AlkK YP_005930269.1 2776277 D 931281 CDS YP_005930270.1 386011993 12520634 2777901..2779019 1 NC_017530.1 Putative acyl-CoA dehydrogenase 2779019 12520634 PPUBIRD1_2437 Pseudomonas putida BIRD-1 Putative acyl-CoA dehydrogenase YP_005930270.1 2777901 D 931281 CDS YP_005930271.1 386011994 12520635 2779037..2779813 1 NC_017530.1 Enoyl-CoA hydratase 2779813 12520635 PPUBIRD1_2438 Pseudomonas putida BIRD-1 Enoyl-CoA hydratase YP_005930271.1 2779037 D 931281 CDS YP_005930272.1 386011995 12520636 2779813..2780967 1 NC_017530.1 Putative acyl-CoA dehydrogenase 2780967 12520636 PPUBIRD1_2439 Pseudomonas putida BIRD-1 Putative acyl-CoA dehydrogenase YP_005930272.1 2779813 D 931281 CDS YP_005930273.1 386011996 12520637 complement(2781049..2781831) 1 NC_017530.1 Putative transcriptional regulator 2781831 12520637 PPUBIRD1_2440 Pseudomonas putida BIRD-1 Putative transcriptional regulator YP_005930273.1 2781049 R 931281 CDS YP_005930274.1 386011997 12520638 2781999..2782754 1 NC_017530.1 Putative oxidoreductase, short-chain dehydrogenase/reductase 2782754 12520638 PPUBIRD1_2441 Pseudomonas putida BIRD-1 Putative oxidoreductase, short-chain dehydrogenase/reductase YP_005930274.1 2781999 D 931281 CDS YP_005930275.1 386011998 12520639 2782832..2783788 1 NC_017530.1 Putative transcriptional regulator; putative regucalcin family protein 2783788 12520639 PPUBIRD1_2442 Pseudomonas putida BIRD-1 Putative transcriptional regulator; putative regucalcin family protein YP_005930275.1 2782832 D 931281 CDS YP_005930276.1 386011999 12520640 2783785..2785905 1 NC_017530.1 pimeloyl-CoA synthetase; PauA 2785905 pauA 12520640 pauA Pseudomonas putida BIRD-1 PauA YP_005930276.1 2783785 D 931281 CDS YP_005930277.1 386012000 12520641 2785927..2786478 1 NC_017530.1 Putative flavoprotein oxidoreductase 2786478 12520641 PPUBIRD1_2444 Pseudomonas putida BIRD-1 Putative flavoprotein oxidoreductase YP_005930277.1 2785927 D 931281 CDS YP_005930278.1 386012001 12520642 2786505..2787923 1 NC_017530.1 short-chain dehydrogenase 2787923 12520642 PPUBIRD1_2445 Pseudomonas putida BIRD-1 short-chain dehydrogenase YP_005930278.1 2786505 D 931281 CDS YP_005930279.1 386012002 12520643 2787923..2788219 1 NC_017530.1 Putative enoyl-CoA hydratase (PaaG-like) 2788219 12520643 PPUBIRD1_2446 Pseudomonas putida BIRD-1 Putative enoyl-CoA hydratase (PaaG-like) YP_005930279.1 2787923 D 931281 CDS YP_005930280.1 386012003 12520644 2788210..2789004 1 NC_017530.1 Putative enoyl-CoA hydratase (PaaG-like) 2789004 12520644 PPUBIRD1_2447 Pseudomonas putida BIRD-1 Putative enoyl-CoA hydratase (PaaG-like) YP_005930280.1 2788210 D 931281 CDS YP_005930281.1 386012004 12520645 2789232..2790302 1 NC_017530.1 Putative monooxygenase 2790302 12520645 PPUBIRD1_2448 Pseudomonas putida BIRD-1 Putative monooxygenase YP_005930281.1 2789232 D 931281 CDS YP_005930282.1 386012005 12520646 2790455..2791750 1 NC_017530.1 Putative transport protein 2791750 12520646 PPUBIRD1_2449 Pseudomonas putida BIRD-1 Putative transport protein YP_005930282.1 2790455 D 931281 CDS YP_005930283.1 386012006 12520647 2791785..2792570 1 NC_017530.1 Enoyl-CoA hydratase 2792570 12520647 PPUBIRD1_2450 Pseudomonas putida BIRD-1 Enoyl-CoA hydratase YP_005930283.1 2791785 D 931281 CDS YP_005930284.1 386012007 12520648 2792572..2794122 1 NC_017530.1 3-hydroxybutyryl-CoA dehydrogenase 2794122 12520648 PPUBIRD1_2451 Pseudomonas putida BIRD-1 3-hydroxybutyryl-CoA dehydrogenase YP_005930284.1 2792572 D 931281 CDS YP_005930285.1 386012008 12520649 2794119..2795402 1 NC_017530.1 3-hydroxybutyryl-CoA epimerase; protein FadB 2795402 fadB 12520649 fadB Pseudomonas putida BIRD-1 protein FadB YP_005930285.1 2794119 D 931281 CDS YP_005930286.1 386012009 12520650 2795497..2796660 1 NC_017530.1 Iron-containing alcohol dehydrogenase 2796660 12520650 PPUBIRD1_2453 Pseudomonas putida BIRD-1 Iron-containing alcohol dehydrogenase YP_005930286.1 2795497 D 931281 CDS YP_005930287.1 386012010 12520651 2796660..2797094 1 NC_017530.1 Thioesterase superfamily protein 2797094 12520651 PPUBIRD1_2454 Pseudomonas putida BIRD-1 Thioesterase superfamily protein YP_005930287.1 2796660 D 931281 CDS YP_005930288.1 386012011 12520652 complement(2797403..2799601) 1 NC_017530.1 Oxidoreductase, large subunit, putative 2799601 12520652 PPUBIRD1_2455 Pseudomonas putida BIRD-1 Oxidoreductase, large subunit, putative YP_005930288.1 2797403 R 931281 CDS YP_005930289.1 386012012 12520653 complement(2799598..2800599) 1 NC_017530.1 Oxidoreductase, molybdopterin-binding subunit 2800599 12520653 PPUBIRD1_2456 Pseudomonas putida BIRD-1 Oxidoreductase, molybdopterin-binding subunit YP_005930289.1 2799598 R 931281 CDS YP_005930290.1 386012013 12520654 complement(2800596..2801123) 1 NC_017530.1 Oxidoreductase, small subunit, putative 2801123 12520654 PPUBIRD1_2457 Pseudomonas putida BIRD-1 Oxidoreductase, small subunit, putative YP_005930290.1 2800596 R 931281 CDS YP_005930291.1 386012014 12520655 complement(2801235..2801615) 1 NC_017530.1 hypothetical protein 2801615 12520655 PPUBIRD1_2458 Pseudomonas putida BIRD-1 hypothetical protein YP_005930291.1 2801235 R 931281 CDS YP_005930292.1 386012015 12520656 2802572..2803402 1 NC_017530.1 TerC family membrane protein 2803402 12520656 PPUBIRD1_2459 Pseudomonas putida BIRD-1 TerC family membrane protein YP_005930292.1 2802572 D 931281 CDS YP_005930293.1 386012016 12520657 complement(2803555..2804793) 1 NC_017530.1 Bcr/CflA family multidrug resistance transporter 2804793 12520657 PPUBIRD1_2460 Pseudomonas putida BIRD-1 Bcr/CflA family multidrug resistance transporter YP_005930293.1 2803555 R 931281 CDS YP_005930294.1 386012017 12520658 complement(2804790..2806103) 1 NC_017530.1 3-oxoacyl-(acyl-carrier-protein) synthase II, putative 2806103 12520658 PPUBIRD1_2461 Pseudomonas putida BIRD-1 3-oxoacyl-(acyl-carrier-protein) synthase II, putative YP_005930294.1 2804790 R 931281 CDS YP_005930295.1 386012018 12520659 complement(2806155..2809247) 1 NC_017530.1 RND efflux transporter 2809247 12520659 PPUBIRD1_2462 Pseudomonas putida BIRD-1 RND efflux transporter YP_005930295.1 2806155 R 931281 CDS YP_005930296.1 386012019 12520660 complement(2809244..2810134) 1 NC_017530.1 RND efflux membrane fusion protein 2810134 12520660 PPUBIRD1_2463 Pseudomonas putida BIRD-1 RND efflux membrane fusion protein YP_005930296.1 2809244 R 931281 CDS YP_005930297.1 386012020 12520661 complement(2810425..2810961) 1 NC_017530.1 TetR family transcriptional regulator 2810961 12520661 PPUBIRD1_2464 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005930297.1 2810425 R 931281 CDS YP_005930298.1 386012021 12520662 2811180..2812574 1 NC_017530.1 Outer membrane lipoprotein 2812574 12520662 PPUBIRD1_2465 Pseudomonas putida BIRD-1 Outer membrane lipoprotein YP_005930298.1 2811180 D 931281 CDS YP_005930299.1 386012022 12520663 complement(2812620..2813021) 1 NC_017530.1 hypothetical protein 2813021 12520663 PPUBIRD1_2466 Pseudomonas putida BIRD-1 hypothetical protein YP_005930299.1 2812620 R 931281 CDS YP_005930300.1 386012023 12520664 complement(2813873..2814175) 1 NC_017530.1 hypothetical protein 2814175 12520664 PPUBIRD1_2467 Pseudomonas putida BIRD-1 hypothetical protein YP_005930300.1 2813873 R 931281 CDS YP_005930301.1 386012024 12520665 complement(2814643..2815626) 1 NC_017530.1 LacI family transcriptional regulator 2815626 12520665 PPUBIRD1_2468 Pseudomonas putida BIRD-1 LacI family transcriptional regulator YP_005930301.1 2814643 R 931281 CDS YP_005930302.1 386012025 12520666 complement(2815711..2817213) 1 NC_017530.1 sucrose-6-phosphate hydrolase 2817213 12520666 PPUBIRD1_2469 Pseudomonas putida BIRD-1 sucrose-6-phosphate hydrolase YP_005930302.1 2815711 R 931281 CDS YP_005930303.1 386012026 12520667 complement(2817210..2818355) 1 NC_017530.1 maltose/maltodextrin ABC transporter, ATP-binding protein; protein MalK 2818355 malK 12520667 malK Pseudomonas putida BIRD-1 protein MalK YP_005930303.1 2817210 R 931281 CDS YP_005930304.1 386012027 12520668 complement(2818383..2819225) 1 NC_017530.1 Sugar ABC transporter permease 2819225 12520668 PPUBIRD1_2471 Pseudomonas putida BIRD-1 Sugar ABC transporter permease YP_005930304.1 2818383 R 931281 CDS YP_005930305.1 386012028 12520669 complement(2819222..2820184) 1 NC_017530.1 Sugar ABC transporter permease 2820184 12520669 PPUBIRD1_2472 Pseudomonas putida BIRD-1 Sugar ABC transporter permease YP_005930305.1 2819222 R 931281 CDS YP_005930306.1 386012029 12520670 complement(2820206..2821480) 1 NC_017530.1 Sugar ABC transporter, periplasmic sugar-binding protein 2821480 12520670 PPUBIRD1_2473 Pseudomonas putida BIRD-1 Sugar ABC transporter, periplasmic sugar-binding protein YP_005930306.1 2820206 R 931281 CDS YP_005930307.1 386012030 12520671 2821650..2823215 1 NC_017530.1 sucrose porin precursor; ScrY 2823215 scrY 12520671 scrY Pseudomonas putida BIRD-1 ScrY YP_005930307.1 2821650 D 931281 CDS YP_005930308.1 386012031 12520672 2823376..2824284 1 NC_017530.1 fructokinase 2824284 12520672 PPUBIRD1_2475 Pseudomonas putida BIRD-1 fructokinase YP_005930308.1 2823376 D 931281 CDS YP_005930309.1 386012032 12520673 complement(2825660..2826097) 1 NC_017530.1 YeeE/YedE family protein 2826097 12520673 PPUBIRD1_2476 Pseudomonas putida BIRD-1 YeeE/YedE family protein YP_005930309.1 2825660 R 931281 CDS YP_005930310.1 386012033 12520674 complement(2826456..2826716) 1 NC_017530.1 Lipoprotein OprI, putative 2826716 12520674 PPUBIRD1_2478 Pseudomonas putida BIRD-1 Lipoprotein OprI, putative YP_005930310.1 2826456 R 931281 CDS YP_005930311.1 386012034 12520675 2826880..2827314 1 NC_017530.1 hypothetical protein 2827314 12520675 PPUBIRD1_2479 Pseudomonas putida BIRD-1 hypothetical protein YP_005930311.1 2826880 D 931281 CDS YP_005930312.1 386012035 12520676 complement(2827374..2828018) 1 NC_017530.1 hypothetical protein 2828018 12520676 PPUBIRD1_2480 Pseudomonas putida BIRD-1 hypothetical protein YP_005930312.1 2827374 R 931281 CDS YP_005930313.1 386012036 12520677 complement(2828093..2829460) 1 NC_017530.1 Metallo-beta-lactamase family protein 2829460 12520677 PPUBIRD1_2481 Pseudomonas putida BIRD-1 Metallo-beta-lactamase family protein YP_005930313.1 2828093 R 931281 CDS YP_005930314.1 386012037 12520678 complement(2829451..2830377) 1 NC_017530.1 UspA domain-containing protein 2830377 12520678 PPUBIRD1_2482 Pseudomonas putida BIRD-1 UspA domain-containing protein YP_005930314.1 2829451 R 931281 CDS YP_005930315.1 386012038 12520679 2830560..2831108 1 NC_017530.1 Acetyltransferase 2831108 12520679 PPUBIRD1_2483 Pseudomonas putida BIRD-1 Acetyltransferase YP_005930315.1 2830560 D 931281 CDS YP_005930316.1 386012039 12520680 complement(2831137..2832063) 1 NC_017530.1 Universal stress protein 2832063 12520680 PPUBIRD1_2484 Pseudomonas putida BIRD-1 Universal stress protein YP_005930316.1 2831137 R 931281 CDS YP_005930317.1 386012040 12520681 2832602..2833423 1 NC_017530.1 CRP/FNR family transcriptional regulator 2833423 12520681 PPUBIRD1_2485 Pseudomonas putida BIRD-1 CRP/FNR family transcriptional regulator YP_005930317.1 2832602 D 931281 CDS YP_005930318.1 386012041 12520682 complement(2833459..2834463) 1 NC_017530.1 PaaX family transcriptional regulator 2834463 12520682 PPUBIRD1_2486 Pseudomonas putida BIRD-1 PaaX family transcriptional regulator YP_005930318.1 2833459 R 931281 CDS YP_005930319.1 386012042 12520683 complement(2834460..2835059) 1 NC_017530.1 phenylacetic acid degradation protein PaaY; PhaM 2835059 phaM 12520683 phaM Pseudomonas putida BIRD-1 PhaM YP_005930319.1 2834460 R 931281 CDS YP_005930320.1 386012043 12520684 2835406..2836179 1 NC_017530.1 Enoyl-CoA hydratase-isomerase 2836179 12520684 PPUBIRD1_2488 Pseudomonas putida BIRD-1 Enoyl-CoA hydratase-isomerase YP_005930320.1 2835406 D 931281 CDS YP_005930321.1 386012044 12520685 2836214..2837005 1 NC_017530.1 Enoyl-CoA hydratase 2837005 12520685 PPUBIRD1_2489 Pseudomonas putida BIRD-1 Enoyl-CoA hydratase YP_005930321.1 2836214 D 931281 CDS YP_005930322.1 386012045 12520686 2837008..2838525 1 NC_017530.1 3-hydroxybutyryl-CoA dehydrogenase; protein PaaC 2838525 paaC 12520686 paaC Pseudomonas putida BIRD-1 protein PaaC YP_005930322.1 2837008 D 931281 CDS YP_005930323.1 386012046 12520687 2838518..2838958 1 NC_017530.1 Phenylacetic acid degradation protein PaaD 2838958 12520687 PPUBIRD1_2491 Pseudomonas putida BIRD-1 Phenylacetic acid degradation protein PaaD YP_005930323.1 2838518 D 931281 CDS YP_005930324.1 386012047 12520688 2838951..2840171 1 NC_017530.1 beta-ketoadipyl CoA thiolase; PhaD 2840171 phaD 12520688 phaD Pseudomonas putida BIRD-1 PhaD YP_005930324.1 2838951 D 931281 CDS YP_005930325.1 386012048 12520689 2840242..2841612 1 NC_017530.1 phenylacetate-CoA ligase; PhaE protein 2841612 phaE 12520689 phaE Pseudomonas putida BIRD-1 PhaE protein YP_005930325.1 2840242 D 931281 CDS YP_005930326.1 386012049 12520690 2841811..2842800 1 NC_017530.1 phenylacetate-CoA oxygenase subunit PaaA; protein PaaA 2842800 paaA 12520690 paaA Pseudomonas putida BIRD-1 protein PaaA YP_005930326.1 2841811 D 931281 CDS YP_005930327.1 386012050 12520691 2842826..2843107 1 NC_017530.1 PaaH 2843107 paaH 12520691 paaH Pseudomonas putida BIRD-1 PaaH YP_005930327.1 2842826 D 931281 CDS YP_005930328.1 386012051 12520692 2843116..2843874 1 NC_017530.1 Phenylacetate-CoA oxygenase, PaaI subunit 2843874 12520692 PPUBIRD1_2496 Pseudomonas putida BIRD-1 Phenylacetate-CoA oxygenase, PaaI subunit YP_005930328.1 2843116 D 931281 CDS YP_005930329.1 386012052 12520693 2843861..2844394 1 NC_017530.1 Phenylacetate-CoA oxygenase, PaaJ subunit 2844394 12520693 PPUBIRD1_2497 Pseudomonas putida BIRD-1 Phenylacetate-CoA oxygenase, PaaJ subunit YP_005930329.1 2843861 D 931281 CDS YP_005930330.1 386012053 12520694 2844410..2845486 1 NC_017530.1 phenylacetate-CoA oxygenase/reductase, PaaK subunit; PhaI 2845486 phaI 12520694 phaI Pseudomonas putida BIRD-1 PhaI YP_005930330.1 2844410 D 931281 CDS YP_005930331.1 386012054 12520695 2845639..2845947 1 NC_017530.1 hypothetical protein 2845947 12520695 PPUBIRD1_2499 Pseudomonas putida BIRD-1 hypothetical protein YP_005930331.1 2845639 D 931281 CDS YP_005930332.1 386012055 12520696 2845944..2847506 1 NC_017530.1 Acetate permease 2847506 12520696 PPUBIRD1_2500 Pseudomonas putida BIRD-1 Acetate permease YP_005930332.1 2845944 D 931281 CDS YP_005930333.1 386012056 12520697 2847525..2848778 1 NC_017530.1 outer membrane porin; PhaK 2848778 phaK 12520697 phaK Pseudomonas putida BIRD-1 PhaK YP_005930333.1 2847525 D 931281 CDS YP_005930334.1 386012057 12520698 2848816..2850870 1 NC_017530.1 Protein maoC 2850870 12520698 PPUBIRD1_2502 Pseudomonas putida BIRD-1 Protein maoC YP_005930334.1 2848816 D 931281 CDS YP_005930335.1 386012058 12520699 complement(2851363..2851632) 1 NC_017530.1 hypothetical protein 2851632 12520699 PPUBIRD1_2504 Pseudomonas putida BIRD-1 hypothetical protein YP_005930335.1 2851363 R 931281 CDS YP_005930336.1 386012059 12520700 complement(2851799..2852008) 1 NC_017530.1 hypothetical protein 2852008 12520700 PPUBIRD1_2505 Pseudomonas putida BIRD-1 hypothetical protein YP_005930336.1 2851799 R 931281 CDS YP_005930337.1 386012060 12520701 2852244..2852642 1 NC_017530.1 NUDIX hydrolase 2852642 12520701 PPUBIRD1_2506 Pseudomonas putida BIRD-1 NUDIX hydrolase YP_005930337.1 2852244 D 931281 CDS YP_005930338.1 386012061 12520702 complement(2852644..2853195) 1 NC_017530.1 Clp protease, putative 2853195 12520702 PPUBIRD1_2507 Pseudomonas putida BIRD-1 Clp protease, putative YP_005930338.1 2852644 R 931281 CDS YP_005930339.1 386012062 12520703 2853320..2854372 1 NC_017530.1 hypothetical protein 2854372 12520703 PPUBIRD1_2508 Pseudomonas putida BIRD-1 hypothetical protein YP_005930339.1 2853320 D 931281 CDS YP_005930340.1 386012063 12520704 2854369..2855142 1 NC_017530.1 endonuclease/exonuclease/phosphatase 2855142 12520704 PPUBIRD1_2509 Pseudomonas putida BIRD-1 endonuclease/exonuclease/phosphatase YP_005930340.1 2854369 D 931281 CDS YP_005930341.1 386012064 12520705 2855139..2856341 1 NC_017530.1 Cardiolipin synthase 2 2856341 12520705 PPUBIRD1_2510 Pseudomonas putida BIRD-1 Cardiolipin synthase 2 YP_005930341.1 2855139 D 931281 CDS YP_005930342.1 386012065 12520706 2856341..2857294 1 NC_017530.1 hypothetical protein 2857294 12520706 PPUBIRD1_2511 Pseudomonas putida BIRD-1 hypothetical protein YP_005930342.1 2856341 D 931281 CDS YP_005930343.1 386012066 12520707 2857323..2857739 1 NC_017530.1 hypothetical protein 2857739 12520707 PPUBIRD1_2512 Pseudomonas putida BIRD-1 hypothetical protein YP_005930343.1 2857323 D 931281 CDS YP_005930344.1 386012067 12520708 complement(2857830..2858054) 1 NC_017530.1 Metallothionein, putative 2858054 12520708 PPUBIRD1_2513 Pseudomonas putida BIRD-1 Metallothionein, putative YP_005930344.1 2857830 R 931281 CDS YP_005930345.1 386012068 12520709 complement(2858051..2858515) 1 NC_017530.1 hypothetical protein 2858515 12520709 PPUBIRD1_2514 Pseudomonas putida BIRD-1 hypothetical protein YP_005930345.1 2858051 R 931281 CDS YP_005930346.1 386012069 12520710 2858643..2861147 1 NC_017530.1 ATP-dependent DNA ligase; LigD 2861147 ligD 12520710 ligD Pseudomonas putida BIRD-1 LigD YP_005930346.1 2858643 D 931281 CDS YP_005930347.1 386012070 12520711 2861185..2862228 1 NC_017530.1 Acyl-CoA dehydrogenase-related protein 2862228 12520711 PPUBIRD1_2516 Pseudomonas putida BIRD-1 Acyl-CoA dehydrogenase-related protein YP_005930347.1 2861185 D 931281 CDS YP_005930348.1 386012071 12520712 2862225..2862980 1 NC_017530.1 LmbE family protein 2862980 12520712 PPUBIRD1_2517 Pseudomonas putida BIRD-1 LmbE family protein YP_005930348.1 2862225 D 931281 CDS YP_005930349.1 386012072 12520713 2862992..2863591 1 NC_017530.1 type 12 methyltransferase 2863591 12520713 PPUBIRD1_2518 Pseudomonas putida BIRD-1 type 12 methyltransferase YP_005930349.1 2862992 D 931281 CDS YP_005930350.1 386012073 12520714 2863588..2864247 1 NC_017530.1 Glycosyl transferase family protein 2864247 12520714 PPUBIRD1_2519 Pseudomonas putida BIRD-1 Glycosyl transferase family protein YP_005930350.1 2863588 D 931281 CDS YP_005930351.1 386012074 12520715 complement(2864269..2865090) 1 NC_017530.1 Ku family containing protein 2865090 12520715 PPUBIRD1_2520 Pseudomonas putida BIRD-1 Ku family containing protein YP_005930351.1 2864269 R 931281 CDS YP_005930352.1 386012075 12520716 complement(2865176..2865763) 1 NC_017530.1 Nucleosidase, putative 2865763 12520716 PPUBIRD1_2521 Pseudomonas putida BIRD-1 Nucleosidase, putative YP_005930352.1 2865176 R 931281 CDS YP_005930353.1 386012076 12520717 complement(2865820..2866926) 1 NC_017530.1 Carboxylate-amine ligase 2866926 12520717 PPUBIRD1_2522 Pseudomonas putida BIRD-1 Carboxylate-amine ligase YP_005930353.1 2865820 R 931281 CDS YP_005930354.1 386012077 12520718 complement(2866933..2867886) 1 NC_017530.1 Methyltransferase small 2867886 12520718 PPUBIRD1_2523 Pseudomonas putida BIRD-1 Methyltransferase small YP_005930354.1 2866933 R 931281 CDS YP_005930355.1 386012078 12520719 complement(2867886..2869217) 1 NC_017530.1 hypothetical protein 2869217 12520719 PPUBIRD1_2524 Pseudomonas putida BIRD-1 hypothetical protein YP_005930355.1 2867886 R 931281 CDS YP_005930356.1 386012079 12520720 complement(2869492..2869674) 1 NC_017530.1 hypothetical protein 2869674 12520720 PPUBIRD1_2526 Pseudomonas putida BIRD-1 hypothetical protein YP_005930356.1 2869492 R 931281 CDS YP_005930357.1 386012080 12520721 complement(2869822..2871105) 1 NC_017530.1 Major facilitator transporter 2871105 12520721 PPUBIRD1_2527 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005930357.1 2869822 R 931281 CDS YP_005930358.1 386012081 12520722 complement(2871110..2872021) 1 NC_017530.1 Aldo/keto reductase 2872021 12520722 PPUBIRD1_2528 Pseudomonas putida BIRD-1 Aldo/keto reductase YP_005930358.1 2871110 R 931281 CDS YP_005930359.1 386012082 12520723 complement(2872111..2872974) 1 NC_017530.1 Dyp-type peroxidase family protein 2872974 12520723 PPUBIRD1_2529 Pseudomonas putida BIRD-1 Dyp-type peroxidase family protein YP_005930359.1 2872111 R 931281 CDS YP_005930360.1 386012083 12520724 2873159..2874052 1 NC_017530.1 bile acid:sodium symporter 2874052 12520724 PPUBIRD1_2530 Pseudomonas putida BIRD-1 bile acid:sodium symporter YP_005930360.1 2873159 D 931281 CDS YP_005930361.1 386012084 12520725 complement(2874096..2874563) 1 NC_017530.1 beta-carotene hydroxylase; CrtZ 2874563 crtZ 12520725 crtZ Pseudomonas putida BIRD-1 CrtZ YP_005930361.1 2874096 R 931281 CDS YP_005930362.1 386012085 12520726 2874961..2875674 1 NC_017530.1 magnesium transporter MgtC family protein; magnesium transport family protein MgtC 2875674 mgtC 12520726 mgtC Pseudomonas putida BIRD-1 magnesium transport family protein MgtC YP_005930362.1 2874961 D 931281 CDS YP_005930363.1 386012086 12520727 2875692..2876201 1 NC_017530.1 Acetyltransferase 2876201 12520727 PPUBIRD1_2533 Pseudomonas putida BIRD-1 Acetyltransferase YP_005930363.1 2875692 D 931281 CDS YP_005930364.1 386012087 12520728 complement(2876245..2877813) 1 NC_017530.1 Diguanylate cyclase 2877813 12520728 PPUBIRD1_2534 Pseudomonas putida BIRD-1 Diguanylate cyclase YP_005930364.1 2876245 R 931281 CDS YP_005930365.1 386012088 12520729 2877966..2878466 1 NC_017530.1 Outer membrane protein-like protein 2878466 12520729 PPUBIRD1_2535 Pseudomonas putida BIRD-1 Outer membrane protein-like protein YP_005930365.1 2877966 D 931281 CDS YP_005930366.1 386012089 12520730 2878475..2878726 1 NC_017530.1 hypothetical protein 2878726 12520730 PPUBIRD1_2536 Pseudomonas putida BIRD-1 hypothetical protein YP_005930366.1 2878475 D 931281 CDS YP_005930367.1 386012090 12520731 complement(2879038..2880024) 1 NC_017530.1 Tn4652, cointegrate resolution protein T, putative 2880024 12520731 PPUBIRD1_2537 Pseudomonas putida BIRD-1 Tn4652, cointegrate resolution protein T, putative YP_005930367.1 2879038 R 931281 CDS YP_005930368.1 386012091 12520732 2880256..2880417 1 NC_017530.1 Transcriptional regulator PyrR, putative 2880417 12520732 PPUBIRD1_2538 Pseudomonas putida BIRD-1 Transcriptional regulator PyrR, putative YP_005930368.1 2880256 D 931281 CDS YP_005930369.1 386012092 12520733 complement(2880686..2881405) 1 NC_017530.1 hypothetical protein 2881405 12520733 PPUBIRD1_2539 Pseudomonas putida BIRD-1 hypothetical protein YP_005930369.1 2880686 R 931281 CDS YP_005930370.1 386012093 12520734 2882145..2883173 1 NC_017530.1 ABC transporter, periplasmic binding component-related protein 2883173 12520734 PPUBIRD1_2540 Pseudomonas putida BIRD-1 ABC transporter, periplasmic binding component-related protein YP_005930370.1 2882145 D 931281 CDS YP_005930371.1 386012094 12520735 2883212..2884237 1 NC_017530.1 Rieske 2Fe-2S family protein 2884237 12520735 PPUBIRD1_2541 Pseudomonas putida BIRD-1 Rieske 2Fe-2S family protein YP_005930371.1 2883212 D 931281 CDS YP_005930372.1 386012095 12520736 2884303..2885151 1 NC_017530.1 ABC transporter ATP-binding protein 2885151 12520736 PPUBIRD1_2542 Pseudomonas putida BIRD-1 ABC transporter ATP-binding protein YP_005930372.1 2884303 D 931281 CDS YP_005930373.1 386012096 12520737 2885237..2885965 1 NC_017530.1 ABC transporter permease 2885965 12520737 PPUBIRD1_2543 Pseudomonas putida BIRD-1 ABC transporter permease YP_005930373.1 2885237 D 931281 CDS YP_005930374.1 386012097 12520738 2886004..2887434 1 NC_017530.1 amidohydrolase 2887434 12520738 PPUBIRD1_2544 Pseudomonas putida BIRD-1 amidohydrolase YP_005930374.1 2886004 D 931281 CDS YP_005930375.1 386012098 12520739 2887431..2888375 1 NC_017530.1 Pdr/VanB family oxidoreductase 2888375 12520739 PPUBIRD1_2545 Pseudomonas putida BIRD-1 Pdr/VanB family oxidoreductase YP_005930375.1 2887431 D 931281 CDS YP_005930376.1 386012099 12520740 2888743..2889348 1 NC_017530.1 hypothetical protein 2889348 12520740 PPUBIRD1_2546 Pseudomonas putida BIRD-1 hypothetical protein YP_005930376.1 2888743 D 931281 CDS YP_005930377.1 386012100 12520741 2889442..2890431 1 NC_017530.1 hypothetical protein 2890431 12520741 PPUBIRD1_2547 Pseudomonas putida BIRD-1 hypothetical protein YP_005930377.1 2889442 D 931281 CDS YP_005930378.1 386012101 12520742 2890428..2891375 1 NC_017530.1 ornithine cyclodeaminase 2891375 12520742 PPUBIRD1_2548 Pseudomonas putida BIRD-1 ornithine cyclodeaminase YP_005930378.1 2890428 D 931281 CDS YP_005930379.1 386012102 12520743 complement(2891389..2892630) 1 NC_017530.1 N-isopropylammelide isopropylaminohydrolase 2892630 12520743 PPUBIRD1_2549 Pseudomonas putida BIRD-1 N-isopropylammelide isopropylaminohydrolase YP_005930379.1 2891389 R 931281 CDS YP_005930380.1 386012103 12520744 complement(2892641..2893852) 1 NC_017530.1 PucR family transcriptional regulator 2893852 12520744 PPUBIRD1_2550 Pseudomonas putida BIRD-1 PucR family transcriptional regulator YP_005930380.1 2892641 R 931281 CDS YP_005930381.1 386012104 12520745 complement(2893849..2895114) 1 NC_017530.1 cytosine permease; CodB 2895114 codB 12520745 codB Pseudomonas putida BIRD-1 CodB YP_005930381.1 2893849 R 931281 CDS YP_005930382.1 386012105 12520746 complement(2895344..2896009) 1 NC_017530.1 TenA family transcription regulator 2896009 12520746 PPUBIRD1_2552 Pseudomonas putida BIRD-1 TenA family transcription regulator YP_005930382.1 2895344 R 931281 CDS YP_005930383.1 386012106 12520747 complement(2896006..2896653) 1 NC_017530.1 TenA family transcription regulator 2896653 12520747 PPUBIRD1_2553 Pseudomonas putida BIRD-1 TenA family transcription regulator YP_005930383.1 2896006 R 931281 CDS YP_005930384.1 386012107 12520748 2897091..2899406 1 NC_017530.1 diguanylate cyclase 2899406 12520748 PPUBIRD1_2554 Pseudomonas putida BIRD-1 diguanylate cyclase YP_005930384.1 2897091 D 931281 CDS YP_005930385.1 386012108 12520749 2899467..2900447 1 NC_017530.1 Phage integrase family protein 2900447 12520749 PPUBIRD1_2555 Pseudomonas putida BIRD-1 Phage integrase family protein YP_005930385.1 2899467 D 931281 CDS YP_005930386.1 386012109 12520750 complement(2900437..2902161) 1 NC_017530.1 SMP-30/gluconolaconase/LRE domain-containing protein 2902161 12520750 PPUBIRD1_2556 Pseudomonas putida BIRD-1 SMP-30/gluconolaconase/LRE domain-containing protein YP_005930386.1 2900437 R 931281 CDS YP_005930387.1 386012110 12520751 2902288..2903187 1 NC_017530.1 LysR family transcriptional regulator 2903187 12520751 PPUBIRD1_2557 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930387.1 2902288 D 931281 CDS YP_005930388.1 386012111 12520752 complement(2903207..2904346) 1 NC_017530.1 glycerate kinase 2904346 12520752 PPUBIRD1_2558 Pseudomonas putida BIRD-1 glycerate kinase YP_005930388.1 2903207 R 931281 CDS YP_005930389.1 386012112 12520753 complement(2904488..2905585) 1 NC_017530.1 CdaR family transcriptional regulator 2905585 12520753 PPUBIRD1_2559 Pseudomonas putida BIRD-1 CdaR family transcriptional regulator YP_005930389.1 2904488 R 931281 CDS YP_005930390.1 386012113 12520754 2905749..2907077 1 NC_017530.1 Major facilitator transporter 2907077 12520754 PPUBIRD1_2560 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005930390.1 2905749 D 931281 CDS YP_005930391.1 386012114 12520755 2907243..2908763 1 NC_017530.1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2908763 12520755 PPUBIRD1_2561 Pseudomonas putida BIRD-1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_005930391.1 2907243 D 931281 CDS YP_005930392.1 386012115 12520756 2908836..2909846 1 NC_017530.1 Aldo/keto reductase 2909846 12520756 PPUBIRD1_2562 Pseudomonas putida BIRD-1 Aldo/keto reductase YP_005930392.1 2908836 D 931281 CDS YP_005930393.1 386012116 12520757 complement(2909935..2910627) 1 NC_017530.1 TraX family protein 2910627 12520757 PPUBIRD1_2563 Pseudomonas putida BIRD-1 TraX family protein YP_005930393.1 2909935 R 931281 CDS YP_005930394.1 386012117 12520758 complement(2910631..2911701) 1 NC_017530.1 Membrane-bound metal-dependent hydrolase 2911701 12520758 PPUBIRD1_2564 Pseudomonas putida BIRD-1 Membrane-bound metal-dependent hydrolase YP_005930394.1 2910631 R 931281 CDS YP_005930395.1 386012118 12520759 complement(2911776..2913026) 1 NC_017530.1 Outer membrane porin 2913026 12520759 PPUBIRD1_2565 Pseudomonas putida BIRD-1 Outer membrane porin YP_005930395.1 2911776 R 931281 CDS YP_005930396.1 386012119 12520760 complement(2913081..2914418) 1 NC_017530.1 benzoate transporter; BenE 2914418 benE 12520760 benE Pseudomonas putida BIRD-1 BenE YP_005930396.1 2913081 R 931281 CDS YP_005930397.1 386012120 12520761 complement(2914427..2915341) 1 NC_017530.1 Catechol 1,2-dioxygenase 2915341 12520761 PPUBIRD1_2567 Pseudomonas putida BIRD-1 Catechol 1,2-dioxygenase YP_005930397.1 2914427 R 931281 CDS YP_005930398.1 386012121 12520762 complement(2915371..2916699) 1 NC_017530.1 major facilitator transporter; BenK 2916699 benK 12520762 benK Pseudomonas putida BIRD-1 BenK YP_005930398.1 2915371 R 931281 CDS YP_005930399.1 386012122 12520763 complement(2916756..2917517) 1 NC_017530.1 cis-diol dehydrogenase; BenD 2917517 benD 12520763 benD Pseudomonas putida BIRD-1 BenD YP_005930399.1 2916756 R 931281 CDS YP_005930400.1 386012123 12520764 complement(2917711..2918721) 1 NC_017530.1 oxidoreductase FAD/NAD(P)-binding domain protein; BenC 2918721 benC 12520764 benC Pseudomonas putida BIRD-1 BenC YP_005930400.1 2917711 R 931281 CDS YP_005930401.1 386012124 12520765 complement(2918794..2919279) 1 NC_017530.1 Benzoate 1,2-dioxygenase 2919279 12520765 PPUBIRD1_2571 Pseudomonas putida BIRD-1 Benzoate 1,2-dioxygenase YP_005930401.1 2918794 R 931281 CDS YP_005930402.1 386012125 12520766 complement(2919276..2920634) 1 NC_017530.1 Toluate 1,2-dioxygenase subunit alpha; BenA 2920634 benA 12520766 benA Pseudomonas putida BIRD-1 BenA YP_005930402.1 2919276 R 931281 CDS YP_005930403.1 386012126 12520767 complement(2920794..2921750) 1 NC_017530.1 AraC family transcriptional regulator 2921750 12520767 PPUBIRD1_2573 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005930403.1 2920794 R 931281 CDS YP_005930404.1 386012127 12520768 complement(2922050..2922781) 1 NC_017530.1 hypothetical protein 2922781 12520768 PPUBIRD1_2574 Pseudomonas putida BIRD-1 hypothetical protein YP_005930404.1 2922050 R 931281 CDS YP_005930405.1 386012128 12520769 complement(2922968..2923759) 1 NC_017530.1 Inositol monophosphatase family protein 2923759 12520769 PPUBIRD1_2575 Pseudomonas putida BIRD-1 Inositol monophosphatase family protein YP_005930405.1 2922968 R 931281 CDS YP_005930406.1 386012129 12520770 2923885..2924775 1 NC_017530.1 Universal stress protein 2924775 12520770 PPUBIRD1_2576 Pseudomonas putida BIRD-1 Universal stress protein YP_005930406.1 2923885 D 931281 CDS YP_005930407.1 386012130 12520771 2925030..2927159 1 NC_017530.1 Outer membrane ferric siderophore receptor, putative 2927159 12520771 PPUBIRD1_2577 Pseudomonas putida BIRD-1 Outer membrane ferric siderophore receptor, putative YP_005930407.1 2925030 D 931281 CDS YP_005930408.1 386012131 12520772 complement(2927191..2927712) 1 NC_017530.1 hypothetical protein 2927712 12520772 PPUBIRD1_2578 Pseudomonas putida BIRD-1 hypothetical protein YP_005930408.1 2927191 R 931281 CDS YP_005930409.1 386012132 12520773 complement(2927966..2928409) 1 NC_017530.1 hypothetical protein 2928409 12520773 PPUBIRD1_2579 Pseudomonas putida BIRD-1 hypothetical protein YP_005930409.1 2927966 R 931281 CDS YP_005930410.1 386012133 12520774 complement(2928536..2929402) 1 NC_017530.1 LysR family transcriptional regulator 2929402 12520774 PPUBIRD1_2580 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930410.1 2928536 R 931281 CDS YP_005930411.1 386012134 12520775 2929510..2930895 1 NC_017530.1 Aldehyde dehydrogenase family protein 2930895 12520775 PPUBIRD1_2581 Pseudomonas putida BIRD-1 Aldehyde dehydrogenase family protein YP_005930411.1 2929510 D 931281 CDS YP_005930412.1 386012135 12520776 complement(2930933..2932843) 1 NC_017530.1 hypothetical protein 2932843 12520776 PPUBIRD1_2582 Pseudomonas putida BIRD-1 hypothetical protein YP_005930412.1 2930933 R 931281 CDS YP_005930413.1 386012136 12520777 complement(2933030..2933929) 1 NC_017530.1 AraC family transcriptional regulator 2933929 12520777 PPUBIRD1_2583 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005930413.1 2933030 R 931281 CDS YP_005930414.1 386012137 12520778 2934113..2935471 1 NC_017530.1 Glutamate--putrescine ligase 2935471 12520778 PPUBIRD1_2584 Pseudomonas putida BIRD-1 Glutamate--putrescine ligase YP_005930414.1 2934113 D 931281 CDS YP_005930415.1 386012138 12520779 2935551..2936639 1 NC_017530.1 Periplasmic polyamine-binding protein, putative 2936639 12520779 PPUBIRD1_2585 Pseudomonas putida BIRD-1 Periplasmic polyamine-binding protein, putative YP_005930415.1 2935551 D 931281 CDS YP_005930416.1 386012139 12520780 2936653..2937948 1 NC_017530.1 Oxidoreductase, putative 2937948 12520780 PPUBIRD1_2586 Pseudomonas putida BIRD-1 Oxidoreductase, putative YP_005930416.1 2936653 D 931281 CDS YP_005930417.1 386012140 12520781 2938101..2938778 1 NC_017530.1 hypothetical protein 2938778 12520781 PPUBIRD1_2587 Pseudomonas putida BIRD-1 hypothetical protein YP_005930417.1 2938101 D 931281 CDS YP_005930418.1 386012141 12520782 complement(2938866..2940242) 1 NC_017530.1 L-serine dehydratase 1 2940242 12520782 PPUBIRD1_2588 Pseudomonas putida BIRD-1 L-serine dehydratase 1 YP_005930418.1 2938866 R 931281 CDS YP_005930419.1 386012142 12520783 2940413..2941330 1 NC_017530.1 LysR family transcriptional regulator 2941330 12520783 PPUBIRD1_2589 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930419.1 2940413 D 931281 CDS YP_005930420.1 386012143 12520784 complement(2941364..2942785) 1 NC_017530.1 Sugar transferase, putative 2942785 12520784 PPUBIRD1_2590 Pseudomonas putida BIRD-1 Sugar transferase, putative YP_005930420.1 2941364 R 931281 CDS YP_005930421.1 386012144 12520785 complement(2942936..2943715) 1 NC_017530.1 WecB/TagA/CpsF family glycosyl transferase 2943715 12520785 PPUBIRD1_2591 Pseudomonas putida BIRD-1 WecB/TagA/CpsF family glycosyl transferase YP_005930421.1 2942936 R 931281 CDS YP_005930422.1 386012145 12520786 complement(2943715..2944902) 1 NC_017530.1 Glycosyl transferase, group 2 family protein 2944902 12520786 PPUBIRD1_2592 Pseudomonas putida BIRD-1 Glycosyl transferase, group 2 family protein YP_005930422.1 2943715 R 931281 CDS YP_005930423.1 386012146 12520787 complement(2944899..2946101) 1 NC_017530.1 glycosyl transferase 2946101 12520787 PPUBIRD1_2593 Pseudomonas putida BIRD-1 glycosyl transferase YP_005930423.1 2944899 R 931281 CDS YP_005930424.1 386012147 12520788 complement(2946198..2947154) 1 NC_017530.1 hypothetical protein 2947154 12520788 PPUBIRD1_2594 Pseudomonas putida BIRD-1 hypothetical protein YP_005930424.1 2946198 R 931281 CDS YP_005930425.1 386012148 12520789 complement(2947164..2948141) 1 NC_017530.1 Glycosyl transferase family protein 2948141 12520789 PPUBIRD1_2595 Pseudomonas putida BIRD-1 Glycosyl transferase family protein YP_005930425.1 2947164 R 931281 CDS YP_005930426.1 386012149 12520790 complement(2948147..2948671) 1 NC_017530.1 Serine acetyltransferase-like protein 2948671 12520790 PPUBIRD1_2596 Pseudomonas putida BIRD-1 Serine acetyltransferase-like protein YP_005930426.1 2948147 R 931281 CDS YP_005930427.1 386012150 12520791 complement(2948680..2949636) 1 NC_017530.1 Glycosyl transferase, putative 2949636 12520791 PPUBIRD1_2597 Pseudomonas putida BIRD-1 Glycosyl transferase, putative YP_005930427.1 2948680 R 931281 CDS YP_005930428.1 386012151 12520792 complement(2949638..2950246) 1 NC_017530.1 hexapeptide repeat-containing transferase 2950246 12520792 PPUBIRD1_2598 Pseudomonas putida BIRD-1 hexapeptide repeat-containing transferase YP_005930428.1 2949638 R 931281 CDS YP_005930429.1 386012152 12520793 complement(2950350..2951816) 1 NC_017530.1 GMC oxidoreductase 2951816 12520793 PPUBIRD1_2599 Pseudomonas putida BIRD-1 GMC oxidoreductase YP_005930429.1 2950350 R 931281 CDS YP_005930430.1 386012153 12520794 complement(2951813..2951944) 1 NC_017530.1 hypothetical protein 2951944 12520794 PPUBIRD1_2600 Pseudomonas putida BIRD-1 hypothetical protein YP_005930430.1 2951813 R 931281 CDS YP_005930431.1 386012154 12520795 complement(2952053..2953336) 1 NC_017530.1 Polysaccharide biosynthesis protein 2953336 12520795 PPUBIRD1_2601 Pseudomonas putida BIRD-1 Polysaccharide biosynthesis protein YP_005930431.1 2952053 R 931281 CDS YP_005930432.1 386012155 12520796 2953525..2955051 1 NC_017530.1 hypothetical protein 2955051 12520796 PPUBIRD1_2602 Pseudomonas putida BIRD-1 hypothetical protein YP_005930432.1 2953525 D 931281 CDS YP_005930433.1 386012156 12520797 2955057..2957657 1 NC_017530.1 hypothetical protein 2957657 12520797 PPUBIRD1_2603 Pseudomonas putida BIRD-1 hypothetical protein YP_005930433.1 2955057 D 931281 CDS YP_005930434.1 386012157 12520798 2957763..2958728 1 NC_017530.1 UDP-glucose 4-epimerase 2958728 12520798 PPUBIRD1_2604 Pseudomonas putida BIRD-1 UDP-glucose 4-epimerase YP_005930434.1 2957763 D 931281 CDS YP_005930435.1 386012158 12520799 complement(2958791..2959597) 1 NC_017530.1 Protein-tyrosine kinase 2959597 12520799 PPUBIRD1_2605 Pseudomonas putida BIRD-1 Protein-tyrosine kinase YP_005930435.1 2958791 R 931281 CDS YP_005930436.1 386012159 12520800 complement(2959609..2961171) 1 NC_017530.1 Lipopolysaccharide biosynthesis protein 2961171 12520800 PPUBIRD1_2606 Pseudomonas putida BIRD-1 Lipopolysaccharide biosynthesis protein YP_005930436.1 2959609 R 931281 CDS YP_005930437.1 386012160 12520801 complement(2961191..2962261) 1 NC_017530.1 hypothetical protein 2962261 12520801 PPUBIRD1_2607 Pseudomonas putida BIRD-1 hypothetical protein YP_005930437.1 2961191 R 931281 CDS YP_005930438.1 386012161 12520802 complement(2962331..2962888) 1 NC_017530.1 Polysaccharide export protein 2962888 12520802 PPUBIRD1_2608 Pseudomonas putida BIRD-1 Polysaccharide export protein YP_005930438.1 2962331 R 931281 CDS YP_005930439.1 386012162 12520803 complement(2963153..2963329) 1 NC_017530.1 hypothetical protein 2963329 12520803 PPUBIRD1_2609 Pseudomonas putida BIRD-1 hypothetical protein YP_005930439.1 2963153 R 931281 CDS YP_005930440.1 386012163 12520804 complement(2963578..2964120) 1 NC_017530.1 Cro/CI family transcriptional regulator 2964120 12520804 PPUBIRD1_2610 Pseudomonas putida BIRD-1 Cro/CI family transcriptional regulator YP_005930440.1 2963578 R 931281 CDS YP_005930441.1 386012164 12520805 complement(2964197..2965615) 1 NC_017530.1 Short chain fatty acid transporter 2965615 12520805 PPUBIRD1_2611 Pseudomonas putida BIRD-1 Short chain fatty acid transporter YP_005930441.1 2964197 R 931281 CDS YP_005930442.1 386012165 12520806 complement(2965770..2966426) 1 NC_017530.1 3-oxoacid CoA-transferase subunit B 2966426 12520806 PPUBIRD1_2612 Pseudomonas putida BIRD-1 3-oxoacid CoA-transferase subunit B YP_005930442.1 2965770 R 931281 CDS YP_005930443.1 386012166 12520807 complement(2966462..2967160) 1 NC_017530.1 3-oxoacid CoA-transferase subunit A 2967160 12520807 PPUBIRD1_2613 Pseudomonas putida BIRD-1 3-oxoacid CoA-transferase subunit A YP_005930443.1 2966462 R 931281 CDS YP_005930444.1 386012167 12520808 2967301..2968206 1 NC_017530.1 LysR family transcriptional regulator 2968206 12520808 PPUBIRD1_2614 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930444.1 2967301 D 931281 CDS YP_005930445.1 386012168 12520809 2968254..2969015 1 NC_017530.1 Aldo/keto reductase 2969015 12520809 PPUBIRD1_2615 Pseudomonas putida BIRD-1 Aldo/keto reductase YP_005930445.1 2968254 D 931281 CDS YP_005930446.1 386012169 12520810 complement(2969800..2972880) 1 NC_017530.1 Error-prone DNA polymerase; DnaE2 2972880 dnaE2 12520810 dnaE2 Pseudomonas putida BIRD-1 DnaE2 YP_005930446.1 2969800 R 931281 CDS YP_005930447.1 386012170 12520811 complement(2972877..2974295) 1 NC_017530.1 hypothetical protein 2974295 12520811 PPUBIRD1_2617 Pseudomonas putida BIRD-1 hypothetical protein YP_005930447.1 2972877 R 931281 CDS YP_005930448.1 386012171 12520812 complement(2974302..2974922) 1 NC_017530.1 hypothetical protein 2974922 12520812 PPUBIRD1_2618 Pseudomonas putida BIRD-1 hypothetical protein YP_005930448.1 2974302 R 931281 CDS YP_005930449.1 386012172 12520813 complement(2974922..2975539) 1 NC_017530.1 LexA repressor 2975539 12520813 PPUBIRD1_2619 Pseudomonas putida BIRD-1 LexA repressor YP_005930449.1 2974922 R 931281 CDS YP_005930450.1 386012173 12520814 2975631..2976314 1 NC_017530.1 HAD family hydrolase 2976314 12520814 PPUBIRD1_2620 Pseudomonas putida BIRD-1 HAD family hydrolase YP_005930450.1 2975631 D 931281 CDS YP_005930451.1 386012174 12520815 complement(2976311..2977696) 1 NC_017530.1 Major facilitator transporter 2977696 12520815 PPUBIRD1_2621 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005930451.1 2976311 R 931281 CDS YP_005930452.1 386012175 12520816 complement(2977741..2978067) 1 NC_017530.1 NIPSNAP family protein 2978067 12520816 PPUBIRD1_2622 Pseudomonas putida BIRD-1 NIPSNAP family protein YP_005930452.1 2977741 R 931281 CDS YP_005930453.1 386012176 12520817 complement(2978067..2979782) 1 NC_017530.1 Putative succinate dehydrogenase 2979782 12520817 PPUBIRD1_2623 Pseudomonas putida BIRD-1 Putative succinate dehydrogenase YP_005930453.1 2978067 R 931281 CDS YP_005930454.1 386012177 12520818 complement(2979779..2980606) 1 NC_017530.1 short-chain dehydrogenase 2980606 12520818 PPUBIRD1_2624 Pseudomonas putida BIRD-1 short-chain dehydrogenase YP_005930454.1 2979779 R 931281 CDS YP_005930455.1 386012178 12520819 2980783..2981655 1 NC_017530.1 Helix-turn-helix domain-containing protein 2981655 12520819 PPUBIRD1_2625 Pseudomonas putida BIRD-1 Helix-turn-helix domain-containing protein YP_005930455.1 2980783 D 931281 CDS YP_005930456.1 386012179 12520820 complement(2981733..2982506) 1 NC_017530.1 Regulatory protein, IclR 2982506 12520820 PPUBIRD1_2626 Pseudomonas putida BIRD-1 Regulatory protein, IclR YP_005930456.1 2981733 R 931281 CDS YP_005930457.1 386012180 12520821 complement(2982571..2984028) 1 NC_017530.1 amidase 2984028 12520821 PPUBIRD1_2627 Pseudomonas putida BIRD-1 amidase YP_005930457.1 2982571 R 931281 CDS YP_005930458.1 386012181 12520822 complement(2984025..2985335) 1 NC_017530.1 Major facilitator transporter 2985335 12520822 PPUBIRD1_2628 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005930458.1 2984025 R 931281 CDS YP_005930459.1 386012182 12520823 complement(2985419..2986594) 1 NC_017530.1 amidohydrolase 2986594 12520823 PPUBIRD1_2629 Pseudomonas putida BIRD-1 amidohydrolase YP_005930459.1 2985419 R 931281 CDS YP_005930460.1 386012183 12520824 2986864..2989380 1 NC_017530.1 UvrABC system protein A 2989380 12520824 PPUBIRD1_2630 Pseudomonas putida BIRD-1 UvrABC system protein A YP_005930460.1 2986864 D 931281 CDS YP_005930461.1 386012184 12520825 2989465..2991114 1 NC_017530.1 Major facilitator transporter 2991114 12520825 PPUBIRD1_2631 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005930461.1 2989465 D 931281 CDS YP_005930462.1 386012185 12520826 2991111..2992244 1 NC_017530.1 Secretion protein HlyD family protein 2992244 12520826 PPUBIRD1_2632 Pseudomonas putida BIRD-1 Secretion protein HlyD family protein YP_005930462.1 2991111 D 931281 CDS YP_005930463.1 386012186 12520827 2992348..2992950 1 NC_017530.1 hypothetical protein 2992950 12520827 PPUBIRD1_2633 Pseudomonas putida BIRD-1 hypothetical protein YP_005930463.1 2992348 D 931281 CDS YP_005930464.1 386012187 12520828 complement(2992987..2993862) 1 NC_017530.1 Auxin efflux carrier 2993862 12520828 PPUBIRD1_2634 Pseudomonas putida BIRD-1 Auxin efflux carrier YP_005930464.1 2992987 R 931281 CDS YP_005930465.1 386012188 12520829 2994289..2995587 1 NC_017530.1 Major facilitator superfamily MFS_1 2995587 12520829 PPUBIRD1_2635 Pseudomonas putida BIRD-1 Major facilitator superfamily MFS_1 YP_005930465.1 2994289 D 931281 CDS YP_005930466.1 386012189 12520830 2995669..2995977 1 NC_017530.1 hypothetical protein 2995977 12520830 PPUBIRD1_2636 Pseudomonas putida BIRD-1 hypothetical protein YP_005930466.1 2995669 D 931281 CDS YP_005930467.1 386012190 12520831 2996026..2996577 1 NC_017530.1 PEBP family protein 2996577 12520831 PPUBIRD1_2637 Pseudomonas putida BIRD-1 PEBP family protein YP_005930467.1 2996026 D 931281 CDS YP_005930468.1 386012191 12520832 2997130..2998191 1 NC_017530.1 Phospho-2-dehydro-3-deoxyheptonate aldolase 2998191 12520832 PPUBIRD1_2640 Pseudomonas putida BIRD-1 Phospho-2-dehydro-3-deoxyheptonate aldolase YP_005930468.1 2997130 D 931281 CDS YP_005930469.1 386012192 12520833 2998272..2998553 1 NC_017530.1 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC 2998553 ppiC 12520833 ppiC Pseudomonas putida BIRD-1 PpiC YP_005930469.1 2998272 D 931281 CDS YP_005930470.1 386012193 12520834 2998696..3000495 1 NC_017530.1 Extracellular solute-binding protein 3000495 12520834 PPUBIRD1_2642 Pseudomonas putida BIRD-1 Extracellular solute-binding protein YP_005930470.1 2998696 D 931281 CDS YP_005930471.1 386012194 12520835 3000492..3001550 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 3001550 12520835 PPUBIRD1_2643 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005930471.1 3000492 D 931281 CDS YP_005930472.1 386012195 12520836 3001550..3002566 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 3002566 12520836 PPUBIRD1_2644 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005930472.1 3001550 D 931281 CDS YP_005930473.1 386012196 12520837 3002626..3004008 1 NC_017530.1 Sigma-54 dependent transcriptional regulator 3004008 12520837 PPUBIRD1_2645 Pseudomonas putida BIRD-1 Sigma-54 dependent transcriptional regulator YP_005930473.1 3002626 D 931281 CDS YP_005930474.1 386012197 12520838 3004234..3005625 1 NC_017530.1 citrate transporter 3005625 12520838 PPUBIRD1_2646 Pseudomonas putida BIRD-1 citrate transporter YP_005930474.1 3004234 D 931281 CDS YP_005930475.1 386012198 12520839 3005636..3006406 1 NC_017530.1 3-hydroxybutyrate dehydrogenase; BdhA 3006406 bdhA 12520839 bdhA Pseudomonas putida BIRD-1 BdhA YP_005930475.1 3005636 D 931281 CDS YP_005930476.1 386012199 12520840 3006462..3006941 1 NC_017530.1 Ecotin 3006941 12520840 PPUBIRD1_2648 Pseudomonas putida BIRD-1 Ecotin YP_005930476.1 3006462 D 931281 CDS YP_005930477.1 386012200 12520841 3007033..3008985 1 NC_017530.1 acetoacetyl-CoA synthetase 3008985 12520841 PPUBIRD1_2649 Pseudomonas putida BIRD-1 acetoacetyl-CoA synthetase YP_005930477.1 3007033 D 931281 CDS YP_005930478.1 386012201 12520842 3009074..3009349 1 NC_017530.1 PpiC-type peptidyl-prolyl cis-trans isomerase 3009349 12520842 PPUBIRD1_2650 Pseudomonas putida BIRD-1 PpiC-type peptidyl-prolyl cis-trans isomerase YP_005930478.1 3009074 D 931281 CDS YP_005930479.1 386012202 12520843 3009462..3011939 1 NC_017530.1 Outer membrane autotransporter 3011939 12520843 PPUBIRD1_2651 Pseudomonas putida BIRD-1 Outer membrane autotransporter YP_005930479.1 3009462 D 931281 CDS YP_005930480.1 386012203 12520844 complement(3011936..3012559) 1 NC_017530.1 Lysine exporter protein LysE/YggA 3012559 12520844 PPUBIRD1_2652 Pseudomonas putida BIRD-1 Lysine exporter protein LysE/YggA YP_005930480.1 3011936 R 931281 CDS YP_005930481.1 386012204 12520845 3012691..3013500 1 NC_017530.1 AraC family transcriptional regulator 3013500 12520845 PPUBIRD1_2653 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005930481.1 3012691 D 931281 CDS YP_005930482.1 386012205 12520846 3013584..3014198 1 NC_017530.1 Lysine exporter protein LysE/YggA 3014198 12520846 PPUBIRD1_2654 Pseudomonas putida BIRD-1 Lysine exporter protein LysE/YggA YP_005930482.1 3013584 D 931281 CDS YP_005930483.1 386012206 12520847 3014216..3014647 1 NC_017530.1 hypothetical protein 3014647 12520847 PPUBIRD1_2655 Pseudomonas putida BIRD-1 hypothetical protein YP_005930483.1 3014216 D 931281 CDS YP_005930484.1 386012207 12520848 complement(3014726..3015058) 1 NC_017530.1 hypothetical protein 3015058 12520848 PPUBIRD1_2656 Pseudomonas putida BIRD-1 hypothetical protein YP_005930484.1 3014726 R 931281 CDS YP_005930485.1 386012208 12520849 3015086..3015829 1 NC_017530.1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3015829 12520849 PPUBIRD1_2657 Pseudomonas putida BIRD-1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_005930485.1 3015086 D 931281 CDS YP_005930486.1 386012209 12520850 3015826..3016068 1 NC_017530.1 hypothetical protein 3016068 12520850 PPUBIRD1_2658 Pseudomonas putida BIRD-1 hypothetical protein YP_005930486.1 3015826 D 931281 CDS YP_005930487.1 386012210 12520851 complement(3016073..3016573) 1 NC_017530.1 Methylated-DNA--protein-cysteine methyltransferase 3016573 12520851 PPUBIRD1_2659 Pseudomonas putida BIRD-1 Methylated-DNA--protein-cysteine methyltransferase YP_005930487.1 3016073 R 931281 CDS YP_005930488.1 386012211 12520852 complement(3016644..3017444) 1 NC_017530.1 Lipopolysaccharide core biosynthesis protein, putative 3017444 12520852 PPUBIRD1_2660 Pseudomonas putida BIRD-1 Lipopolysaccharide core biosynthesis protein, putative YP_005930488.1 3016644 R 931281 CDS YP_005930489.1 386012212 12520853 complement(3017646..3019298) 1 NC_017530.1 Acyl-CoA synthetase 3019298 12520853 PPUBIRD1_2661 Pseudomonas putida BIRD-1 Acyl-CoA synthetase YP_005930489.1 3017646 R 931281 CDS YP_005930490.1 386012213 12520854 complement(3019298..3021076) 1 NC_017530.1 Acyl-CoA dehydrogenase domain-containing protein 3021076 12520854 PPUBIRD1_2662 Pseudomonas putida BIRD-1 Acyl-CoA dehydrogenase domain-containing protein YP_005930490.1 3019298 R 931281 CDS YP_005930491.1 386012214 12520855 complement(3021069..3023534) 1 NC_017530.1 RND efflux transporter 3023534 12520855 PPUBIRD1_2663 Pseudomonas putida BIRD-1 RND efflux transporter YP_005930491.1 3021069 R 931281 CDS YP_005930492.1 386012215 12520856 complement(3023534..3024544) 1 NC_017530.1 hypothetical protein 3024544 12520856 PPUBIRD1_2664 Pseudomonas putida BIRD-1 hypothetical protein YP_005930492.1 3023534 R 931281 CDS YP_005930493.1 386012216 12520857 complement(3024566..3025924) 1 NC_017530.1 hypothetical protein 3025924 12520857 PPUBIRD1_2665 Pseudomonas putida BIRD-1 hypothetical protein YP_005930493.1 3024566 R 931281 CDS YP_005930494.1 386012217 12520858 complement(3025963..3027918) 1 NC_017530.1 hypothetical protein 3027918 12520858 PPUBIRD1_2666 Pseudomonas putida BIRD-1 hypothetical protein YP_005930494.1 3025963 R 931281 CDS YP_005930495.1 386012218 12520859 complement(3027996..3028571) 1 NC_017530.1 hypothetical protein 3028571 12520859 PPUBIRD1_2667 Pseudomonas putida BIRD-1 hypothetical protein YP_005930495.1 3027996 R 931281 CDS YP_005930496.1 386012219 12520860 3028818..3029849 1 NC_017530.1 Helix-turn-helix domain-containing protein 3029849 12520860 PPUBIRD1_2668 Pseudomonas putida BIRD-1 Helix-turn-helix domain-containing protein YP_005930496.1 3028818 D 931281 CDS YP_005930497.1 386012220 12520861 complement(3030141..3030794) 1 NC_017530.1 DSBA oxidoreductase 3030794 12520861 PPUBIRD1_2669 Pseudomonas putida BIRD-1 DSBA oxidoreductase YP_005930497.1 3030141 R 931281 CDS YP_005930498.1 386012221 12520862 complement(3030799..3032079) 1 NC_017530.1 Major facilitator transporter 3032079 12520862 PPUBIRD1_2670 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005930498.1 3030799 R 931281 CDS YP_005930499.1 386012222 12520863 complement(3032207..3033259) 1 NC_017530.1 hypothetical protein 3033259 12520863 PPUBIRD1_2671 Pseudomonas putida BIRD-1 hypothetical protein YP_005930499.1 3032207 R 931281 CDS YP_005930500.1 386012223 12520864 complement(3033314..3034162) 1 NC_017530.1 taurine dioxygenase 3034162 12520864 PPUBIRD1_2672 Pseudomonas putida BIRD-1 taurine dioxygenase YP_005930500.1 3033314 R 931281 CDS YP_005930501.1 386012224 12520865 complement(3034176..3035156) 1 NC_017530.1 Alcohol dehydrogenase 3035156 12520865 PPUBIRD1_2673 Pseudomonas putida BIRD-1 Alcohol dehydrogenase YP_005930501.1 3034176 R 931281 CDS YP_005930502.1 386012225 12520866 complement(3035632..3035961) 1 NC_017530.1 hypothetical protein 3035961 12520866 PPUBIRD1_2674 Pseudomonas putida BIRD-1 hypothetical protein YP_005930502.1 3035632 R 931281 CDS YP_005930503.1 386012226 12520867 3036161..3036361 1 NC_017530.1 hypothetical protein 3036361 12520867 PPUBIRD1_2675 Pseudomonas putida BIRD-1 hypothetical protein YP_005930503.1 3036161 D 931281 CDS YP_005930504.1 386012227 12520868 complement(3036405..3036524) 1 NC_017530.1 hypothetical protein 3036524 12520868 PPUBIRD1_2676 Pseudomonas putida BIRD-1 hypothetical protein YP_005930504.1 3036405 R 931281 CDS YP_005930505.1 386012228 12520869 complement(3036587..3036922) 1 NC_017530.1 hypothetical protein 3036922 12520869 PPUBIRD1_2677 Pseudomonas putida BIRD-1 hypothetical protein YP_005930505.1 3036587 R 931281 CDS YP_005930506.1 386012229 12520870 complement(3037096..3037464) 1 NC_017530.1 hypothetical protein 3037464 12520870 PPUBIRD1_2678 Pseudomonas putida BIRD-1 hypothetical protein YP_005930506.1 3037096 R 931281 CDS YP_005930507.1 386012230 12520871 complement(3037868..3038155) 1 NC_017530.1 hypothetical protein 3038155 12520871 PPUBIRD1_2679 Pseudomonas putida BIRD-1 hypothetical protein YP_005930507.1 3037868 R 931281 CDS YP_005930508.1 386012231 12520872 3038372..3038899 1 NC_017530.1 hypothetical protein 3038899 12520872 PPUBIRD1_2680 Pseudomonas putida BIRD-1 hypothetical protein YP_005930508.1 3038372 D 931281 CDS YP_005930509.1 386012232 12520873 3039003..3039551 1 NC_017530.1 RpoT 3039551 rpoT 12520873 rpoT Pseudomonas putida BIRD-1 RpoT YP_005930509.1 3039003 D 931281 CDS YP_005930510.1 386012233 12520874 3039548..3040240 1 NC_017530.1 hypothetical protein 3040240 12520874 PPUBIRD1_2682 Pseudomonas putida BIRD-1 hypothetical protein YP_005930510.1 3039548 D 931281 CDS YP_005930511.1 386012234 12520875 complement(3040292..3040549) 1 NC_017530.1 hypothetical protein 3040549 12520875 PPUBIRD1_2683 Pseudomonas putida BIRD-1 hypothetical protein YP_005930511.1 3040292 R 931281 CDS YP_005930512.1 386012235 12520876 complement(3040791..3041228) 1 NC_017530.1 3-dehydroquinate dehydratase; AroQ_2 3041228 aroQ_2 12520876 aroQ_2 Pseudomonas putida BIRD-1 AroQ_2 YP_005930512.1 3040791 R 931281 CDS YP_005930513.1 386012236 12520877 complement(3041233..3042051) 1 NC_017530.1 shikimate 5-dehydrogenase; AroE_2 3042051 aroE_2 12520877 aroE_2 Pseudomonas putida BIRD-1 AroE_2 YP_005930513.1 3041233 R 931281 CDS YP_005930514.1 386012237 12520878 complement(3042048..3043280) 1 NC_017530.1 L-carnitine dehydratase/bile acid-inducible protein F 3043280 12520878 PPUBIRD1_2686 Pseudomonas putida BIRD-1 L-carnitine dehydratase/bile acid-inducible protein F YP_005930514.1 3042048 R 931281 CDS YP_005930515.1 386012238 12520879 complement(3043277..3043732) 1 NC_017530.1 Dehydratase 3043732 12520879 PPUBIRD1_2687 Pseudomonas putida BIRD-1 Dehydratase YP_005930515.1 3043277 R 931281 CDS YP_005930516.1 386012239 12520880 complement(3043729..3044127) 1 NC_017530.1 glyoxalase 3044127 12520880 PPUBIRD1_2688 Pseudomonas putida BIRD-1 glyoxalase YP_005930516.1 3043729 R 931281 CDS YP_005930517.1 386012240 12520881 complement(3044124..3045071) 1 NC_017530.1 2-dehydropantoate 2-reductase 3045071 12520881 PPUBIRD1_2689 Pseudomonas putida BIRD-1 2-dehydropantoate 2-reductase YP_005930517.1 3044124 R 931281 CDS YP_005930518.1 386012241 12520882 3045165..3046064 1 NC_017530.1 CnmA 3046064 12520882 PPUBIRD1_2690 Pseudomonas putida BIRD-1 CnmA YP_005930518.1 3045165 D 931281 CDS YP_005930519.1 386012242 12520883 complement(3046436..3046867) 1 NC_017530.1 Glutathione-dependent formaldehyde-activating, GFA 3046867 12520883 PPUBIRD1_2691 Pseudomonas putida BIRD-1 Glutathione-dependent formaldehyde-activating, GFA YP_005930519.1 3046436 R 931281 CDS YP_005930520.1 386012243 12520884 3046972..3047865 1 NC_017530.1 LysR family transcriptional regulator 3047865 12520884 PPUBIRD1_2692 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930520.1 3046972 D 931281 CDS YP_005930521.1 386012244 12520885 complement(3050753..3051415) 1 NC_017530.1 Putative lipoprotein 3051415 12520885 PPUBIRD1_2693 Pseudomonas putida BIRD-1 Putative lipoprotein YP_005930521.1 3050753 R 931281 CDS YP_005930522.1 386012245 12520886 complement(3051542..3053053) 1 NC_017530.1 Diguanylate cyclase 3053053 12520886 PPUBIRD1_2694 Pseudomonas putida BIRD-1 Diguanylate cyclase YP_005930522.1 3051542 R 931281 CDS YP_005930523.1 386012246 12520887 3053361..3053885 1 NC_017530.1 hypothetical protein 3053885 12520887 PPUBIRD1_2695 Pseudomonas putida BIRD-1 hypothetical protein YP_005930523.1 3053361 D 931281 CDS YP_005930524.1 386012247 12520888 3053882..3054718 1 NC_017530.1 Putative transmembrane sensor 3054718 12520888 PPUBIRD1_2696 Pseudomonas putida BIRD-1 Putative transmembrane sensor YP_005930524.1 3053882 D 931281 CDS YP_005930525.1 386012248 12520889 3054893..3057235 1 NC_017530.1 Putative siderophore receptor 3057235 12520889 PPUBIRD1_2697 Pseudomonas putida BIRD-1 Putative siderophore receptor YP_005930525.1 3054893 D 931281 CDS YP_005930526.1 386012249 12520890 complement(3057324..3058112) 1 NC_017530.1 Short chain dehydrogenase/reductase family oxidoreductase 3058112 12520890 PPUBIRD1_2698 Pseudomonas putida BIRD-1 Short chain dehydrogenase/reductase family oxidoreductase YP_005930526.1 3057324 R 931281 CDS YP_005930527.1 386012250 12520891 complement(3058159..3059157) 1 NC_017530.1 Alcohol dehydrogenase, zinc-containing 3059157 12520891 PPUBIRD1_2699 Pseudomonas putida BIRD-1 Alcohol dehydrogenase, zinc-containing YP_005930527.1 3058159 R 931281 CDS YP_005930528.1 386012251 12520892 3059272..3059715 1 NC_017530.1 hypothetical protein 3059715 12520892 PPUBIRD1_2700 Pseudomonas putida BIRD-1 hypothetical protein YP_005930528.1 3059272 D 931281 CDS YP_005930529.1 386012252 12520893 complement(3059846..3060727) 1 NC_017530.1 LysR family transcriptional regulator 3060727 12520893 PPUBIRD1_2701 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930529.1 3059846 R 931281 CDS YP_005930530.1 386012253 12520894 3061070..3062065 1 NC_017530.1 Oxidoreductase, putative 3062065 12520894 PPUBIRD1_2703 Pseudomonas putida BIRD-1 Oxidoreductase, putative YP_005930530.1 3061070 D 931281 CDS YP_005930531.1 386012254 12520895 3062117..3062248 1 NC_017530.1 phosphoglycerate mutase 3062248 12520895 PPUBIRD1_2704 Pseudomonas putida BIRD-1 phosphoglycerate mutase YP_005930531.1 3062117 D 931281 CDS YP_005930532.1 386012255 12520896 complement(3063111..3064112) 1 NC_017530.1 Alcohol dehydrogenase, zinc-containing 3064112 12520896 PPUBIRD1_2705 Pseudomonas putida BIRD-1 Alcohol dehydrogenase, zinc-containing YP_005930532.1 3063111 R 931281 CDS YP_005930533.1 386012256 12520897 3064220..3065098 1 NC_017530.1 LysR family transcriptional regulator 3065098 12520897 PPUBIRD1_2706 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930533.1 3064220 D 931281 CDS YP_005930534.1 386012257 12520898 complement(3065161..3065979) 1 NC_017530.1 AraC family transcriptional regulator 3065979 12520898 PPUBIRD1_2707 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005930534.1 3065161 R 931281 CDS YP_005930535.1 386012258 12520899 3066109..3066627 1 NC_017530.1 Alkylhydroperoxidase 3066627 12520899 PPUBIRD1_2708 Pseudomonas putida BIRD-1 Alkylhydroperoxidase YP_005930535.1 3066109 D 931281 CDS YP_005930536.1 386012259 12520900 3066641..3066895 1 NC_017530.1 glutaredoxin 3066895 12520900 PPUBIRD1_2709 Pseudomonas putida BIRD-1 glutaredoxin YP_005930536.1 3066641 D 931281 CDS YP_005930537.1 386012260 12520901 complement(3066987..3068081) 1 NC_017530.1 Acetyltransferase 3068081 12520901 PPUBIRD1_2710 Pseudomonas putida BIRD-1 Acetyltransferase YP_005930537.1 3066987 R 931281 CDS YP_005930538.1 386012261 12520902 3068176..3069756 1 NC_017530.1 RimK domain-containing protein ATP-grasp 3069756 12520902 PPUBIRD1_2711 Pseudomonas putida BIRD-1 RimK domain-containing protein ATP-grasp YP_005930538.1 3068176 D 931281 CDS YP_005930539.1 386012262 12520903 3069760..3070671 1 NC_017530.1 Magnesium/cobalt transporter CorA family protein 3070671 12520903 PPUBIRD1_2712 Pseudomonas putida BIRD-1 Magnesium/cobalt transporter CorA family protein YP_005930539.1 3069760 D 931281 CDS YP_005930540.1 386012263 12520904 complement(3070981..3071307) 1 NC_017530.1 hypothetical protein 3071307 12520904 PPUBIRD1_2714 Pseudomonas putida BIRD-1 hypothetical protein YP_005930540.1 3070981 R 931281 CDS YP_005930541.1 386012264 12520905 complement(3071486..3072493) 1 NC_017530.1 Zinc-binding alcohol dehydrogenase 3072493 12520905 PPUBIRD1_2715 Pseudomonas putida BIRD-1 Zinc-binding alcohol dehydrogenase YP_005930541.1 3071486 R 931281 CDS YP_005930542.1 386012265 12520906 3072599..3073489 1 NC_017530.1 LysR family transcriptional regulator 3073489 12520906 PPUBIRD1_2716 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930542.1 3072599 D 931281 CDS YP_005930543.1 386012266 12520907 3074236..3074712 1 NC_017530.1 hypothetical protein 3074712 12520907 PPUBIRD1_2717 Pseudomonas putida BIRD-1 hypothetical protein YP_005930543.1 3074236 D 931281 CDS YP_005930544.1 386012267 12520908 complement(3074798..3075739) 1 NC_017530.1 Helix-turn-helix domain-containing protein 3075739 12520908 PPUBIRD1_2718 Pseudomonas putida BIRD-1 Helix-turn-helix domain-containing protein YP_005930544.1 3074798 R 931281 CDS YP_005930545.1 386012268 12520909 3076269..3077327 1 NC_017530.1 Phenylacetaldoxime dehydratase 3077327 12520909 PPUBIRD1_2719 Pseudomonas putida BIRD-1 Phenylacetaldoxime dehydratase YP_005930545.1 3076269 D 931281 CDS YP_005930546.1 386012269 12520910 3077410..3078276 1 NC_017530.1 Meta-pathway phenol degradation-like protein 3078276 12520910 PPUBIRD1_2720 Pseudomonas putida BIRD-1 Meta-pathway phenol degradation-like protein YP_005930546.1 3077410 D 931281 CDS YP_005930547.1 386012270 12520911 3078331..3078855 1 NC_017530.1 Globin 3078855 12520911 PPUBIRD1_2721 Pseudomonas putida BIRD-1 Globin YP_005930547.1 3078331 D 931281 CDS YP_005930548.1 386012271 12520912 3079045..3080559 1 NC_017530.1 amidase 3080559 12520912 PPUBIRD1_2722 Pseudomonas putida BIRD-1 amidase YP_005930548.1 3079045 D 931281 CDS YP_005930549.1 386012272 12520913 3080647..3081228 1 NC_017530.1 Nitrile hydratase, alpha subunit 3081228 12520913 PPUBIRD1_2723 Pseudomonas putida BIRD-1 Nitrile hydratase, alpha subunit YP_005930549.1 3080647 D 931281 CDS YP_005930550.1 386012273 12520914 3081270..3081932 1 NC_017530.1 nitrile hydratase 3081932 12520914 PPUBIRD1_2724 Pseudomonas putida BIRD-1 nitrile hydratase YP_005930550.1 3081270 D 931281 CDS YP_005930551.1 386012274 12520915 3081929..3083191 1 NC_017530.1 47 kDa protein 3083191 12520915 PPUBIRD1_2725 Pseudomonas putida BIRD-1 47 kDa protein YP_005930551.1 3081929 D 931281 CDS YP_005930552.1 386012275 12520916 complement(3083303..3083809) 1 NC_017530.1 hypothetical protein 3083809 12520916 PPUBIRD1_2726 Pseudomonas putida BIRD-1 hypothetical protein YP_005930552.1 3083303 R 931281 CDS YP_005930553.1 386012276 12520917 3084033..3085676 1 NC_017530.1 GntR family transcriptional regulator 3085676 12520917 PPUBIRD1_2727 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005930553.1 3084033 D 931281 CDS YP_005930554.1 386012277 12520918 complement(3085818..3086183) 1 NC_017530.1 Transcriptional regulator MvaT, P16 subunit, putative 3086183 12520918 PPUBIRD1_2728 Pseudomonas putida BIRD-1 Transcriptional regulator MvaT, P16 subunit, putative YP_005930554.1 3085818 R 931281 CDS YP_005930555.1 386012278 12520919 complement(3086495..3086908) 1 NC_017530.1 hypothetical protein 3086908 12520919 PPUBIRD1_2729 Pseudomonas putida BIRD-1 hypothetical protein YP_005930555.1 3086495 R 931281 CDS YP_005930556.1 386012279 12520920 complement(3087066..3088469) 1 NC_017530.1 Sensor histidine kinase/response regulator 3088469 12520920 PPUBIRD1_2730 Pseudomonas putida BIRD-1 Sensor histidine kinase/response regulator YP_005930556.1 3087066 R 931281 CDS YP_005930557.1 386012280 12520921 complement(3088466..3090280) 1 NC_017530.1 Sensor histidine kinase 3090280 12520921 PPUBIRD1_2731 Pseudomonas putida BIRD-1 Sensor histidine kinase YP_005930557.1 3088466 R 931281 CDS YP_005930558.1 386012281 12520922 complement(3090277..3091275) 1 NC_017530.1 Cytochrome c551 peroxidase, putative 3091275 12520922 PPUBIRD1_2732 Pseudomonas putida BIRD-1 Cytochrome c551 peroxidase, putative YP_005930558.1 3090277 R 931281 CDS YP_005930559.1 386012282 12520923 3091473..3092843 1 NC_017530.1 Response regulator 3092843 12520923 PPUBIRD1_2733 Pseudomonas putida BIRD-1 Response regulator YP_005930559.1 3091473 D 931281 CDS YP_005930560.1 386012283 12520924 3092963..3093628 1 NC_017530.1 hypothetical protein 3093628 12520924 PPUBIRD1_2734 Pseudomonas putida BIRD-1 hypothetical protein YP_005930560.1 3092963 D 931281 CDS YP_005930561.1 386012284 12520925 3095034..3095507 1 NC_017530.1 OsmC family protein 3095507 12520925 PPUBIRD1_2735 Pseudomonas putida BIRD-1 OsmC family protein YP_005930561.1 3095034 D 931281 CDS YP_005930562.1 386012285 12520926 3097198..3097362 1 NC_017530.1 Putative phage integrase 3097362 12520926 PPUBIRD1_2736 Pseudomonas putida BIRD-1 Putative phage integrase YP_005930562.1 3097198 D 931281 CDS YP_005930563.1 386012286 12520927 complement(3098661..3099248) 1 NC_017530.1 hypothetical protein 3099248 12520927 PPUBIRD1_2737 Pseudomonas putida BIRD-1 hypothetical protein YP_005930563.1 3098661 R 931281 CDS YP_005930564.1 386012287 12520928 3099655..3100371 1 NC_017530.1 AzlC family protein 3100371 12520928 PPUBIRD1_2738 Pseudomonas putida BIRD-1 AzlC family protein YP_005930564.1 3099655 D 931281 CDS YP_005930565.1 386012288 12520929 3100361..3100681 1 NC_017530.1 Branched-chain amino acid transport 3100681 12520929 PPUBIRD1_2739 Pseudomonas putida BIRD-1 Branched-chain amino acid transport YP_005930565.1 3100361 D 931281 CDS YP_005930566.1 386012289 12520930 3100715..3101356 1 NC_017530.1 Lysine exporter protein LysE/YggA 3101356 12520930 PPUBIRD1_2740 Pseudomonas putida BIRD-1 Lysine exporter protein LysE/YggA YP_005930566.1 3100715 D 931281 CDS YP_005930567.1 386012290 12520931 3102174..3103727 1 NC_017530.1 Putative recombinase 3103727 12520931 PPUBIRD1_2741 Pseudomonas putida BIRD-1 Putative recombinase YP_005930567.1 3102174 D 931281 CDS YP_005930568.1 386012291 12520932 3103727..3104620 1 NC_017530.1 Putative ParB-like protein 3104620 12520932 PPUBIRD1_2742 Pseudomonas putida BIRD-1 Putative ParB-like protein YP_005930568.1 3103727 D 931281 CDS YP_005930569.1 386012292 12520933 3104890..3105522 1 NC_017530.1 Putative plasmid partitioning protein 3105522 12520933 PPUBIRD1_2743 Pseudomonas putida BIRD-1 Putative plasmid partitioning protein YP_005930569.1 3104890 D 931281 CDS YP_005930570.1 386012293 12520934 complement(3106252..3106461) 1 NC_017530.1 hypothetical protein 3106461 12520934 PPUBIRD1_2744 Pseudomonas putida BIRD-1 hypothetical protein YP_005930570.1 3106252 R 931281 CDS YP_005930571.1 386012294 12520935 complement(3106455..3107774) 1 NC_017530.1 DNA-directed DNA polymerase 3107774 12520935 PPUBIRD1_2745 Pseudomonas putida BIRD-1 DNA-directed DNA polymerase YP_005930571.1 3106455 R 931281 CDS YP_005930572.1 386012295 12520936 complement(3109459..3110253) 1 NC_017530.1 Prophage PSPPH02, adenine modification methytransferase 3110253 12520936 PPUBIRD1_2746 Pseudomonas putida BIRD-1 Prophage PSPPH02, adenine modification methytransferase YP_005930572.1 3109459 R 931281 CDS YP_005930573.1 386012296 12520937 3110477..3110833 1 NC_017530.1 hypothetical protein 3110833 12520937 PPUBIRD1_2747 Pseudomonas putida BIRD-1 hypothetical protein YP_005930573.1 3110477 D 931281 CDS YP_005930574.1 386012297 12520938 complement(3110935..3111384) 1 NC_017530.1 hypothetical protein 3111384 12520938 PPUBIRD1_2748 Pseudomonas putida BIRD-1 hypothetical protein YP_005930574.1 3110935 R 931281 CDS YP_005930575.1 386012298 12520939 complement(3111481..3112239) 1 NC_017530.1 hypothetical protein 3112239 12520939 PPUBIRD1_2749 Pseudomonas putida BIRD-1 hypothetical protein YP_005930575.1 3111481 R 931281 CDS YP_005930576.1 386012299 12520940 complement(3112254..3114026) 1 NC_017530.1 hypothetical protein 3114026 12520940 PPUBIRD1_2750 Pseudomonas putida BIRD-1 hypothetical protein YP_005930576.1 3112254 R 931281 CDS YP_005930577.1 386012300 12520941 complement(3114070..3114249) 1 NC_017530.1 hypothetical protein 3114249 12520941 PPUBIRD1_2751 Pseudomonas putida BIRD-1 hypothetical protein YP_005930577.1 3114070 R 931281 CDS YP_005930578.1 386012301 12520942 complement(3114555..3117596) 1 NC_017530.1 hypothetical protein 3117596 12520942 PPUBIRD1_2752 Pseudomonas putida BIRD-1 hypothetical protein YP_005930578.1 3114555 R 931281 CDS YP_005930579.1 386012302 12520943 complement(3117631..3118032) 1 NC_017530.1 hypothetical protein 3118032 12520943 PPUBIRD1_2753 Pseudomonas putida BIRD-1 hypothetical protein YP_005930579.1 3117631 R 931281 CDS YP_005930580.1 386012303 12520944 complement(3118032..3118517) 1 NC_017530.1 hypothetical protein 3118517 12520944 PPUBIRD1_2754 Pseudomonas putida BIRD-1 hypothetical protein YP_005930580.1 3118032 R 931281 CDS YP_005930581.1 386012304 12520945 complement(3118514..3121849) 1 NC_017530.1 Lambda family phage tail tape measure protein 3121849 12520945 PPUBIRD1_2755 Pseudomonas putida BIRD-1 Lambda family phage tail tape measure protein YP_005930581.1 3118514 R 931281 CDS YP_005930582.1 386012305 12520946 complement(3123247..3123576) 1 NC_017530.1 hypothetical protein 3123576 12520946 PPUBIRD1_2757 Pseudomonas putida BIRD-1 hypothetical protein YP_005930582.1 3123247 R 931281 CDS YP_005930583.1 386012306 12520947 complement(3123617..3124120) 1 NC_017530.1 hypothetical protein 3124120 12520947 PPUBIRD1_2758 Pseudomonas putida BIRD-1 hypothetical protein YP_005930583.1 3123617 R 931281 CDS YP_005930584.1 386012307 12520948 complement(3124176..3124562) 1 NC_017530.1 hypothetical protein 3124562 12520948 PPUBIRD1_2759 Pseudomonas putida BIRD-1 hypothetical protein YP_005930584.1 3124176 R 931281 CDS YP_005930585.1 386012308 12520949 complement(3124555..3125055) 1 NC_017530.1 HK97 family phage protein 3125055 12520949 PPUBIRD1_2760 Pseudomonas putida BIRD-1 HK97 family phage protein YP_005930585.1 3124555 R 931281 CDS YP_005930586.1 386012309 12520950 complement(3125059..3125238) 1 NC_017530.1 hypothetical protein 3125238 12520950 PPUBIRD1_2761 Pseudomonas putida BIRD-1 hypothetical protein YP_005930586.1 3125059 R 931281 CDS YP_005930587.1 386012310 12520951 complement(3125570..3125911) 1 NC_017530.1 Gp7 3125911 12520951 PPUBIRD1_2762 Pseudomonas putida BIRD-1 Gp7 YP_005930587.1 3125570 R 931281 CDS YP_005930588.1 386012311 12520952 complement(3126496..3127680) 1 NC_017530.1 Major head protein 3127680 12520952 PPUBIRD1_2764 Pseudomonas putida BIRD-1 Major head protein YP_005930588.1 3126496 R 931281 CDS YP_005930589.1 386012312 12520953 complement(3127683..3128540) 1 NC_017530.1 Peptidase S14 ClpP 3128540 12520953 PPUBIRD1_2765 Pseudomonas putida BIRD-1 Peptidase S14 ClpP YP_005930589.1 3127683 R 931281 CDS YP_005930590.1 386012313 12520954 complement(3128544..3129854) 1 NC_017530.1 Orf4; portal protein 3129854 12520954 PPUBIRD1_2766 Pseudomonas putida BIRD-1 portal protein YP_005930590.1 3128544 R 931281 CDS YP_005930591.1 386012314 12520955 complement(3130005..3131684) 1 NC_017530.1 hypothetical protein 3131684 12520955 PPUBIRD1_2768 Pseudomonas putida BIRD-1 hypothetical protein YP_005930591.1 3130005 R 931281 CDS YP_005930592.1 386012315 12520956 complement(3133327..3133629) 1 NC_017530.1 Putative lipoprotein 3133629 12520956 PPUBIRD1_2770 Pseudomonas putida BIRD-1 Putative lipoprotein YP_005930592.1 3133327 R 931281 CDS YP_005930593.1 386012316 12520957 complement(3133644..3134015) 1 NC_017530.1 hypothetical protein 3134015 12520957 PPUBIRD1_2771 Pseudomonas putida BIRD-1 hypothetical protein YP_005930593.1 3133644 R 931281 CDS YP_005930594.1 386012317 12520958 complement(3134041..3134463) 1 NC_017530.1 Host specificity protein J 3134463 12520958 PPUBIRD1_2772 Pseudomonas putida BIRD-1 Host specificity protein J YP_005930594.1 3134041 R 931281 CDS YP_005930595.1 386012318 12520959 3134832..3135233 1 NC_017530.1 hypothetical protein 3135233 12520959 PPUBIRD1_2773 Pseudomonas putida BIRD-1 hypothetical protein YP_005930595.1 3134832 D 931281 CDS YP_005930596.1 386012319 12520960 complement(3136042..3136383) 1 NC_017530.1 hypothetical protein 3136383 12520960 PPUBIRD1_2774 Pseudomonas putida BIRD-1 hypothetical protein YP_005930596.1 3136042 R 931281 CDS YP_005930597.1 386012320 12520961 complement(3136443..3136670) 1 NC_017530.1 hypothetical protein 3136670 12520961 PPUBIRD1_2775 Pseudomonas putida BIRD-1 hypothetical protein YP_005930597.1 3136443 R 931281 CDS YP_005930598.1 386012321 12520962 complement(3137032..3138330) 1 NC_017530.1 Phage integrase family protein 3138330 12520962 PPUBIRD1_2777 Pseudomonas putida BIRD-1 Phage integrase family protein YP_005930598.1 3137032 R 931281 CDS YP_005930599.1 386012322 12520963 complement(3138327..3138755) 1 NC_017530.1 VRR-NUC domain-containing protein 3138755 12520963 PPUBIRD1_2778 Pseudomonas putida BIRD-1 VRR-NUC domain-containing protein YP_005930599.1 3138327 R 931281 CDS YP_005930600.1 386012323 12520964 complement(3138752..3139048) 1 NC_017530.1 hypothetical protein 3139048 12520964 PPUBIRD1_2779 Pseudomonas putida BIRD-1 hypothetical protein YP_005930600.1 3138752 R 931281 CDS YP_005930601.1 386012324 12520965 complement(3139051..3139860) 1 NC_017530.1 IstB domain-containing protein ATP-binding protein 3139860 12520965 PPUBIRD1_2780 Pseudomonas putida BIRD-1 IstB domain-containing protein ATP-binding protein YP_005930601.1 3139051 R 931281 CDS YP_005930602.1 386012325 12520966 complement(3139850..3140662) 1 NC_017530.1 Phage replication protein O, putative 3140662 12520966 PPUBIRD1_2781 Pseudomonas putida BIRD-1 Phage replication protein O, putative YP_005930602.1 3139850 R 931281 CDS YP_005930603.1 386012326 12520967 3141164..3142045 1 NC_017530.1 Prophage PSPPH03, Cro/CI family transcriptional regulator 3142045 12520967 PPUBIRD1_2782 Pseudomonas putida BIRD-1 Prophage PSPPH03, Cro/CI family transcriptional regulator YP_005930603.1 3141164 D 931281 CDS YP_005930604.1 386012327 12520968 complement(3142074..3142391) 1 NC_017530.1 hypothetical protein 3142391 12520968 PPUBIRD1_2783 Pseudomonas putida BIRD-1 hypothetical protein YP_005930604.1 3142074 R 931281 CDS YP_005930605.1 386012328 12520969 3143197..3143580 1 NC_017530.1 LuxR family transcriptional regulator 3143580 12520969 PPUBIRD1_2784 Pseudomonas putida BIRD-1 LuxR family transcriptional regulator YP_005930605.1 3143197 D 931281 CDS YP_005930606.1 386012329 12520970 3143599..3143937 1 NC_017530.1 hypothetical protein 3143937 12520970 PPUBIRD1_2785 Pseudomonas putida BIRD-1 hypothetical protein YP_005930606.1 3143599 D 931281 CDS YP_005930607.1 386012330 12520971 3143934..3144431 1 NC_017530.1 ssDNA-binding protein 3144431 12520971 PPUBIRD1_2786 Pseudomonas putida BIRD-1 ssDNA-binding protein YP_005930607.1 3143934 D 931281 CDS YP_005930608.1 386012331 12520972 3144434..3144595 1 NC_017530.1 hypothetical protein 3144595 12520972 PPUBIRD1_2787 Pseudomonas putida BIRD-1 hypothetical protein YP_005930608.1 3144434 D 931281 CDS YP_005930609.1 386012332 12520973 3144684..3145031 1 NC_017530.1 hypothetical protein 3145031 12520973 PPUBIRD1_2788 Pseudomonas putida BIRD-1 hypothetical protein YP_005930609.1 3144684 D 931281 CDS YP_005930610.1 386012333 12520974 3145058..3145873 1 NC_017530.1 hypothetical protein 3145873 12520974 PPUBIRD1_2789 Pseudomonas putida BIRD-1 hypothetical protein YP_005930610.1 3145058 D 931281 CDS YP_005930611.1 386012334 12520975 3147050..3147496 1 NC_017530.1 DNA-cytosine methyltransferase 3147496 12520975 PPUBIRD1_2790 Pseudomonas putida BIRD-1 DNA-cytosine methyltransferase YP_005930611.1 3147050 D 931281 CDS YP_005930612.1 386012335 12520976 3148244..3148894 1 NC_017530.1 hypothetical protein 3148894 12520976 PPUBIRD1_2791 Pseudomonas putida BIRD-1 hypothetical protein YP_005930612.1 3148244 D 931281 CDS YP_005930613.1 386012336 12520977 3149959..3150600 1 NC_017530.1 hypothetical protein 3150600 12520977 PPUBIRD1_2792 Pseudomonas putida BIRD-1 hypothetical protein YP_005930613.1 3149959 D 931281 CDS YP_005930614.1 386012337 12520978 3150597..3150848 1 NC_017530.1 hypothetical protein 3150848 12520978 PPUBIRD1_2793 Pseudomonas putida BIRD-1 hypothetical protein YP_005930614.1 3150597 D 931281 CDS YP_005930615.1 386012338 12520979 3150845..3151072 1 NC_017530.1 hypothetical protein 3151072 12520979 PPUBIRD1_2794 Pseudomonas putida BIRD-1 hypothetical protein YP_005930615.1 3150845 D 931281 CDS YP_005930616.1 386012339 12520980 3151069..3151464 1 NC_017530.1 hypothetical protein 3151464 12520980 PPUBIRD1_2795 Pseudomonas putida BIRD-1 hypothetical protein YP_005930616.1 3151069 D 931281 CDS YP_005930617.1 386012340 12520981 3152472..3153665 1 NC_017530.1 Putative phage integrase 3153665 12520981 PPUBIRD1_2799 Pseudomonas putida BIRD-1 Putative phage integrase YP_005930617.1 3152472 D 931281 CDS YP_005930618.1 386012341 12520982 3153686..3155272 1 NC_017530.1 ABC transporter ATP-binding protein ybiT 3155272 12520982 PPUBIRD1_2800 Pseudomonas putida BIRD-1 ABC transporter ATP-binding protein ybiT YP_005930618.1 3153686 D 931281 CDS YP_005930619.1 386012342 12520983 3155501..3156694 1 NC_017530.1 Major facilitator superfamily transporter 3156694 12520983 PPUBIRD1_2801 Pseudomonas putida BIRD-1 Major facilitator superfamily transporter YP_005930619.1 3155501 D 931281 CDS YP_005930620.1 386012343 12520984 3157889..3158731 1 NC_017530.1 Putative glutathione S-transferase YghU 3158731 12520984 PPUBIRD1_2802 Pseudomonas putida BIRD-1 Putative glutathione S-transferase YghU YP_005930620.1 3157889 D 931281 CDS YP_005930621.1 386012344 12520985 3158923..3160626 1 NC_017530.1 amidase 3160626 12520985 PPUBIRD1_2803 Pseudomonas putida BIRD-1 amidase YP_005930621.1 3158923 D 931281 CDS YP_005930622.1 386012345 12520986 3160679..3161383 1 NC_017530.1 YheO domain-containing protein 3161383 12520986 PPUBIRD1_2804 Pseudomonas putida BIRD-1 YheO domain-containing protein YP_005930622.1 3160679 D 931281 CDS YP_005930623.1 386012346 12520987 3161380..3162297 1 NC_017530.1 bifunctional; L-serine dehydratase, putative 3162297 12520987 PPUBIRD1_2805 Pseudomonas putida BIRD-1 L-serine dehydratase, putative YP_005930623.1 3161380 D 931281 CDS YP_005930624.1 386012347 12520988 3162483..3163580 1 NC_017530.1 carboxynorspermidine decarboxylase; protein NspC 3163580 nspC 12520988 nspC Pseudomonas putida BIRD-1 protein NspC YP_005930624.1 3162483 D 931281 CDS YP_005930625.1 386012348 12520989 3163613..3164857 1 NC_017530.1 saccharopine dehydrogenase 3164857 12520989 PPUBIRD1_2807 Pseudomonas putida BIRD-1 saccharopine dehydrogenase YP_005930625.1 3163613 D 931281 CDS YP_005930626.1 386012349 12520990 complement(3164988..3166034) 1 NC_017530.1 hypothetical protein 3166034 12520990 PPUBIRD1_2808 Pseudomonas putida BIRD-1 hypothetical protein YP_005930626.1 3164988 R 931281 CDS YP_005930627.1 386012350 12520991 3166279..3167607 1 NC_017530.1 UDP-glucose 6-dehydrogenase 3167607 12520991 PPUBIRD1_2809 Pseudomonas putida BIRD-1 UDP-glucose 6-dehydrogenase YP_005930627.1 3166279 D 931281 CDS YP_005930628.1 386012351 12520992 complement(3167617..3169236) 1 NC_017530.1 Malate dehydrogenase (quinone) 3; Mqo3 3169236 mqo3 12520992 mqo3 Pseudomonas putida BIRD-1 Mqo3 YP_005930628.1 3167617 R 931281 CDS YP_005930629.1 386012352 12520993 3169381..3170601 1 NC_017530.1 radical SAM protein 3170601 12520993 PPUBIRD1_2811 Pseudomonas putida BIRD-1 radical SAM protein YP_005930629.1 3169381 D 931281 CDS YP_005930630.1 386012353 12520994 3170592..3171440 1 NC_017530.1 hypothetical protein 3171440 12520994 PPUBIRD1_2812 Pseudomonas putida BIRD-1 hypothetical protein YP_005930630.1 3170592 D 931281 CDS YP_005930631.1 386012354 12520995 complement(3171503..3172474) 1 NC_017530.1 Urea amidolyase related protein 3172474 12520995 PPUBIRD1_2813 Pseudomonas putida BIRD-1 Urea amidolyase related protein YP_005930631.1 3171503 R 931281 CDS YP_005930632.1 386012355 12520996 complement(3172471..3173358) 1 NC_017530.1 allophanate hydrolase subunit 1 3173358 12520996 PPUBIRD1_2814 Pseudomonas putida BIRD-1 allophanate hydrolase subunit 1 YP_005930632.1 3172471 R 931281 CDS YP_005930633.1 386012356 12520997 complement(3173451..3174209) 1 NC_017530.1 hypothetical protein 3174209 12520997 PPUBIRD1_2815 Pseudomonas putida BIRD-1 hypothetical protein YP_005930633.1 3173451 R 931281 CDS YP_005930634.1 386012357 12520998 3174330..3175247 1 NC_017530.1 LysR family transcriptional regulator 3175247 12520998 PPUBIRD1_2816 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930634.1 3174330 D 931281 CDS YP_005930635.1 386012358 12520999 3175433..3177499 1 NC_017530.1 Trehalose synthase 3177499 12520999 PPUBIRD1_2817 Pseudomonas putida BIRD-1 Trehalose synthase YP_005930635.1 3175433 D 931281 CDS YP_005930636.1 386012359 12521000 3177671..3178300 1 NC_017530.1 riboflavin synthase subunit alpha; protein RibE 3178300 ribE 12521000 ribE Pseudomonas putida BIRD-1 protein RibE YP_005930636.1 3177671 D 931281 CDS YP_005930637.1 386012360 12521001 3178349..3179011 1 NC_017530.1 hypothetical protein 3179011 12521001 PPUBIRD1_2819 Pseudomonas putida BIRD-1 hypothetical protein YP_005930637.1 3178349 D 931281 CDS YP_005930638.1 386012361 12521002 complement(3179012..3180514) 1 NC_017530.1 Proline/betaine transporter; ProP 3180514 proP 12521002 proP Pseudomonas putida BIRD-1 ProP YP_005930638.1 3179012 R 931281 CDS YP_005930639.1 386012362 12521003 complement(3180673..3181647) 1 NC_017530.1 delta-aminolevulinic acid dehydratase; HemB protein 3181647 hemB 12521003 hemB Pseudomonas putida BIRD-1 HemB protein YP_005930639.1 3180673 R 931281 CDS YP_005930640.1 386012363 12521004 complement(3181843..3182736) 1 NC_017530.1 hypothetical protein 3182736 12521004 PPUBIRD1_2823 Pseudomonas putida BIRD-1 hypothetical protein YP_005930640.1 3181843 R 931281 CDS YP_005930641.1 386012364 12521005 complement(3182824..3183636) 1 NC_017530.1 GABA permease 3183636 12521005 PPUBIRD1_2824 Pseudomonas putida BIRD-1 GABA permease YP_005930641.1 3182824 R 931281 CDS YP_005930642.1 386012365 12521006 complement(3183609..3184214) 1 NC_017530.1 GABA permease 3184214 12521006 PPUBIRD1_2825 Pseudomonas putida BIRD-1 GABA permease YP_005930642.1 3183609 R 931281 CDS YP_005930643.1 386012366 12521007 complement(3184365..3185615) 1 NC_017530.1 Hydroxyglutarate oxidase 3185615 12521007 PPUBIRD1_2826 Pseudomonas putida BIRD-1 Hydroxyglutarate oxidase YP_005930643.1 3184365 R 931281 CDS YP_005930644.1 386012367 12521008 complement(3185730..3186707) 1 NC_017530.1 Protein csiD 3186707 12521008 PPUBIRD1_2827 Pseudomonas putida BIRD-1 Protein csiD YP_005930644.1 3185730 R 931281 CDS YP_005930645.1 386012368 12521009 3186977..3187597 1 NC_017530.1 DNA-binding transcriptional regulator CsiR 3187597 12521009 PPUBIRD1_2828 Pseudomonas putida BIRD-1 DNA-binding transcriptional regulator CsiR YP_005930645.1 3186977 D 931281 CDS YP_005930646.1 386012369 12521010 3187672..3188352 1 NC_017530.1 Winged helix family two component transcriptional regulator 3188352 12521010 PPUBIRD1_2829 Pseudomonas putida BIRD-1 Winged helix family two component transcriptional regulator YP_005930646.1 3187672 D 931281 CDS YP_005930647.1 386012370 12521011 3188426..3189721 1 NC_017530.1 Integral membrane sensor signal transduction histidine kinase 3189721 12521011 PPUBIRD1_2830 Pseudomonas putida BIRD-1 Integral membrane sensor signal transduction histidine kinase YP_005930647.1 3188426 D 931281 CDS YP_005930648.1 386012371 12521012 complement(3189851..3191233) 1 NC_017530.1 Cysteinyl-tRNA synthetase; protein CysS 3191233 cysS 12521012 cysS Pseudomonas putida BIRD-1 protein CysS YP_005930648.1 3189851 R 931281 CDS YP_005930649.1 386012372 12521013 complement(3191243..3192946) 1 NC_017530.1 glutaminyl-tRNA synthetase 3192946 12521013 PPUBIRD1_2832 Pseudomonas putida BIRD-1 glutaminyl-tRNA synthetase YP_005930649.1 3191243 R 931281 CDS YP_005930650.1 386012373 12521014 3193105..3193695 1 NC_017530.1 Peptidyl-prolyl cis-trans isomerase, cyclophilin type 3193695 12521014 PPUBIRD1_2833 Pseudomonas putida BIRD-1 Peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_005930650.1 3193105 D 931281 CDS YP_005930651.1 386012374 12521015 3193692..3194414 1 NC_017530.1 UDP-2,3-diacylglucosamine hydrolase 3194414 12521015 PPUBIRD1_2834 Pseudomonas putida BIRD-1 UDP-2,3-diacylglucosamine hydrolase YP_005930651.1 3193692 D 931281 CDS YP_005930652.1 386012375 12521016 complement(3194496..3196808) 1 NC_017530.1 Acyl-homoserine lactone acylase pvdQ 3196808 12521016 PPUBIRD1_2835 Pseudomonas putida BIRD-1 Acyl-homoserine lactone acylase pvdQ YP_005930652.1 3194496 R 931281 CDS YP_005930653.1 386012376 12521017 3197005..3197379 1 NC_017530.1 hypothetical protein 3197379 12521017 PPUBIRD1_2836 Pseudomonas putida BIRD-1 hypothetical protein YP_005930653.1 3197005 D 931281 CDS YP_005930654.1 386012377 12521018 complement(3197416..3197604) 1 NC_017530.1 hypothetical protein 3197604 12521018 PPUBIRD1_2837 Pseudomonas putida BIRD-1 hypothetical protein YP_005930654.1 3197416 R 931281 CDS YP_005930655.1 386012378 12521019 3197756..3198214 1 NC_017530.1 hypothetical protein 3198214 12521019 PPUBIRD1_2838 Pseudomonas putida BIRD-1 hypothetical protein YP_005930655.1 3197756 D 931281 CDS YP_005930656.1 386012379 12521020 3198466..3198846 1 NC_017530.1 hypothetical protein 3198846 12521020 PPUBIRD1_2839 Pseudomonas putida BIRD-1 hypothetical protein YP_005930656.1 3198466 D 931281 CDS YP_005930657.1 386012380 12521021 3198943..3199572 1 NC_017530.1 hypothetical protein 3199572 12521021 PPUBIRD1_2840 Pseudomonas putida BIRD-1 hypothetical protein YP_005930657.1 3198943 D 931281 CDS YP_005930658.1 386012381 12521022 3199653..3200186 1 NC_017530.1 hypothetical protein 3200186 12521022 PPUBIRD1_2841 Pseudomonas putida BIRD-1 hypothetical protein YP_005930658.1 3199653 D 931281 CDS YP_005930659.1 386012382 12521023 complement(3200207..3203827) 1 NC_017530.1 hypothetical protein 3203827 12521023 PPUBIRD1_2842 Pseudomonas putida BIRD-1 hypothetical protein YP_005930659.1 3200207 R 931281 CDS YP_005930660.1 386012383 12521024 complement(3203878..3205602) 1 NC_017530.1 Surface antigen (D15) 3205602 12521024 PPUBIRD1_2843 Pseudomonas putida BIRD-1 Surface antigen (D15) YP_005930660.1 3203878 R 931281 CDS YP_005930661.1 386012384 12521025 complement(3205673..3206323) 1 NC_017530.1 N-acetyltransferase GCN5 3206323 12521025 PPUBIRD1_2844 Pseudomonas putida BIRD-1 N-acetyltransferase GCN5 YP_005930661.1 3205673 R 931281 CDS YP_005930662.1 386012385 12521026 3206486..3207298 1 NC_017530.1 Exonuclease III 3207298 12521026 PPUBIRD1_2845 Pseudomonas putida BIRD-1 Exonuclease III YP_005930662.1 3206486 D 931281 CDS YP_005930663.1 386012386 12521027 complement(3207339..3208091) 1 NC_017530.1 Putative transmembrane anti-sigma factor 3208091 12521027 PPUBIRD1_2846 Pseudomonas putida BIRD-1 Putative transmembrane anti-sigma factor YP_005930663.1 3207339 R 931281 CDS YP_005930664.1 386012387 12521028 complement(3208093..3208608) 1 NC_017530.1 ECF subfamily RNA polymerase sigma-24 factor 3208608 12521028 PPUBIRD1_2847 Pseudomonas putida BIRD-1 ECF subfamily RNA polymerase sigma-24 factor YP_005930664.1 3208093 R 931281 CDS YP_005930665.1 386012388 12521029 3208733..3209785 1 NC_017530.1 Catalase domain protein 3209785 12521029 PPUBIRD1_2848 Pseudomonas putida BIRD-1 Catalase domain protein YP_005930665.1 3208733 D 931281 CDS YP_005930666.1 386012389 12521030 3209782..3210315 1 NC_017530.1 Cytochrome B561 3210315 12521030 PPUBIRD1_2849 Pseudomonas putida BIRD-1 Cytochrome B561 YP_005930666.1 3209782 D 931281 CDS YP_005930667.1 386012390 12521031 3210397..3211602 1 NC_017530.1 Major facilitator transporter 3211602 12521031 PPUBIRD1_2850 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005930667.1 3210397 D 931281 CDS YP_005930668.1 386012391 12521032 3211684..3212229 1 NC_017530.1 XRE family transcriptional regulator 3212229 12521032 PPUBIRD1_2851 Pseudomonas putida BIRD-1 XRE family transcriptional regulator YP_005930668.1 3211684 D 931281 CDS YP_005930669.1 386012392 12521033 3212298..3212531 1 NC_017530.1 hypothetical protein 3212531 12521033 PPUBIRD1_2852 Pseudomonas putida BIRD-1 hypothetical protein YP_005930669.1 3212298 D 931281 CDS YP_005930670.1 386012393 12521034 complement(3212504..3213118) 1 NC_017530.1 DSBA oxidoreductase 3213118 12521034 PPUBIRD1_2853 Pseudomonas putida BIRD-1 DSBA oxidoreductase YP_005930670.1 3212504 R 931281 CDS YP_005930671.1 386012394 12521035 complement(3213148..3213879) 1 NC_017530.1 Short chain dehydrogenase/reductase family oxidoreductase 3213879 12521035 PPUBIRD1_2854 Pseudomonas putida BIRD-1 Short chain dehydrogenase/reductase family oxidoreductase YP_005930671.1 3213148 R 931281 CDS YP_005930672.1 386012395 12521036 3213969..3214532 1 NC_017530.1 TetR family transcriptional regulator 3214532 12521036 PPUBIRD1_2855 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005930672.1 3213969 D 931281 CDS YP_005930673.1 386012396 12521037 3214519..3215112 1 NC_017530.1 hypothetical protein 3215112 12521037 PPUBIRD1_2856 Pseudomonas putida BIRD-1 hypothetical protein YP_005930673.1 3214519 D 931281 CDS YP_005930674.1 386012397 12521038 complement(3215564..3216553) 1 NC_017530.1 Bile acid/Na+ symporter family protein 3216553 12521038 PPUBIRD1_2857 Pseudomonas putida BIRD-1 Bile acid/Na+ symporter family protein YP_005930674.1 3215564 R 931281 CDS YP_005930675.1 386012398 12521039 3216672..3217814 1 NC_017530.1 beta-lactamase; AmpC 3217814 ampC 12521039 ampC Pseudomonas putida BIRD-1 AmpC YP_005930675.1 3216672 D 931281 CDS YP_005930676.1 386012399 12521040 3218115..3218447 1 NC_017530.1 hypothetical protein 3218447 12521040 PPUBIRD1_2859 Pseudomonas putida BIRD-1 hypothetical protein YP_005930676.1 3218115 D 931281 CDS YP_005930677.1 386012400 12521041 complement(3218494..3218805) 1 NC_017530.1 hypothetical protein 3218805 12521041 PPUBIRD1_2860 Pseudomonas putida BIRD-1 hypothetical protein YP_005930677.1 3218494 R 931281 CDS YP_005930678.1 386012401 12521042 complement(3218947..3219135) 1 NC_017530.1 hypothetical protein 3219135 12521042 PPUBIRD1_2861 Pseudomonas putida BIRD-1 hypothetical protein YP_005930678.1 3218947 R 931281 CDS YP_005930679.1 386012402 12521043 complement(3219274..3219594) 1 NC_017530.1 hypothetical protein 3219594 12521043 PPUBIRD1_2862 Pseudomonas putida BIRD-1 hypothetical protein YP_005930679.1 3219274 R 931281 CDS YP_005930680.1 386012403 12521044 complement(3219665..3220549) 1 NC_017530.1 hypothetical protein 3220549 12521044 PPUBIRD1_2863 Pseudomonas putida BIRD-1 hypothetical protein YP_005930680.1 3219665 R 931281 CDS YP_005930681.1 386012404 12521045 complement(3220713..3221468) 1 NC_017530.1 hypothetical protein 3221468 12521045 PPUBIRD1_2864 Pseudomonas putida BIRD-1 hypothetical protein YP_005930681.1 3220713 R 931281 CDS YP_005930682.1 386012405 12521046 complement(3221491..3222534) 1 NC_017530.1 Spermidine/putrescine-binding periplasmic protein-like protein 3222534 12521046 PPUBIRD1_2865 Pseudomonas putida BIRD-1 Spermidine/putrescine-binding periplasmic protein-like protein YP_005930682.1 3221491 R 931281 CDS YP_005930683.1 386012406 12521047 3222710..3224662 1 NC_017530.1 NADH:flavin oxidoreductase 3224662 12521047 PPUBIRD1_2866 Pseudomonas putida BIRD-1 NADH:flavin oxidoreductase YP_005930683.1 3222710 D 931281 CDS YP_005930684.1 386012407 12521048 3224702..3225301 1 NC_017530.1 Cro/CI family transcriptional regulator 3225301 12521048 PPUBIRD1_2867 Pseudomonas putida BIRD-1 Cro/CI family transcriptional regulator YP_005930684.1 3224702 D 931281 CDS YP_005930685.1 386012408 12521049 3225382..3226584 1 NC_017530.1 Pyridine nucleotide-disulfide oxidoreductase family protein 3226584 12521049 PPUBIRD1_2868 Pseudomonas putida BIRD-1 Pyridine nucleotide-disulfide oxidoreductase family protein YP_005930685.1 3225382 D 931281 CDS YP_005930686.1 386012409 12521050 complement(3226653..3227264) 1 NC_017530.1 FMN-dependent NADH-azoreductase 1; AcpD 3227264 acpD 12521050 acpD Pseudomonas putida BIRD-1 AcpD YP_005930686.1 3226653 R 931281 CDS YP_005930687.1 386012410 12521051 3227398..3228300 1 NC_017530.1 LysR family transcriptional regulator 3228300 12521051 PPUBIRD1_2870 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930687.1 3227398 D 931281 CDS YP_005930688.1 386012411 12521052 3228308..3228652 1 NC_017530.1 hypothetical protein 3228652 12521052 PPUBIRD1_2871 Pseudomonas putida BIRD-1 hypothetical protein YP_005930688.1 3228308 D 931281 CDS YP_005930689.1 386012412 12521053 complement(3228711..3229124) 1 NC_017530.1 hypothetical protein 3229124 12521053 PPUBIRD1_2872 Pseudomonas putida BIRD-1 hypothetical protein YP_005930689.1 3228711 R 931281 CDS YP_005930690.1 386012413 12521054 complement(3229117..3229947) 1 NC_017530.1 undecaprenyl-diphosphatase 3229947 12521054 PPUBIRD1_2873 Pseudomonas putida BIRD-1 undecaprenyl-diphosphatase YP_005930690.1 3229117 R 931281 CDS YP_005930691.1 386012414 12521055 3230248..3231882 1 NC_017530.1 methyl-accepting chemotaxis sensory transducer 3231882 12521055 PPUBIRD1_2874 Pseudomonas putida BIRD-1 methyl-accepting chemotaxis sensory transducer YP_005930691.1 3230248 D 931281 CDS YP_005930692.1 386012415 12521056 3232062..3232628 1 NC_017530.1 Nicotinamide mononucleotide transporter 3232628 12521056 PPUBIRD1_2875 Pseudomonas putida BIRD-1 Nicotinamide mononucleotide transporter YP_005930692.1 3232062 D 931281 CDS YP_005930693.1 386012416 12521057 3232625..3233194 1 NC_017530.1 hypothetical protein 3233194 12521057 PPUBIRD1_2876 Pseudomonas putida BIRD-1 hypothetical protein YP_005930693.1 3232625 D 931281 CDS YP_005930694.1 386012417 12521058 3233493..3233930 1 NC_017530.1 hypothetical protein 3233930 12521058 PPUBIRD1_2877 Pseudomonas putida BIRD-1 hypothetical protein YP_005930694.1 3233493 D 931281 CDS YP_005930695.1 386012418 12521059 3233932..3234510 1 NC_017530.1 hypothetical protein 3234510 12521059 PPUBIRD1_2878 Pseudomonas putida BIRD-1 hypothetical protein YP_005930695.1 3233932 D 931281 CDS YP_005930696.1 386012419 12521060 3234560..3236011 1 NC_017530.1 hypothetical protein 3236011 12521060 PPUBIRD1_2879 Pseudomonas putida BIRD-1 hypothetical protein YP_005930696.1 3234560 D 931281 CDS YP_005930697.1 386012420 12521061 3236073..3236753 1 NC_017530.1 hypothetical protein 3236753 12521061 PPUBIRD1_2880 Pseudomonas putida BIRD-1 hypothetical protein YP_005930697.1 3236073 D 931281 CDS YP_005930698.1 386012421 12521062 3236799..3237551 1 NC_017530.1 hypothetical protein 3237551 12521062 PPUBIRD1_2881 Pseudomonas putida BIRD-1 hypothetical protein YP_005930698.1 3236799 D 931281 CDS YP_005930699.1 386012422 12521063 3237634..3238878 1 NC_017530.1 hypothetical protein 3238878 12521063 PPUBIRD1_2882 Pseudomonas putida BIRD-1 hypothetical protein YP_005930699.1 3237634 D 931281 CDS YP_005930700.1 386012423 12521064 3239014..3241215 1 NC_017530.1 Sulfatase domain-containing protein 3241215 12521064 PPUBIRD1_2883 Pseudomonas putida BIRD-1 Sulfatase domain-containing protein YP_005930700.1 3239014 D 931281 CDS YP_005930701.1 386012424 12521065 3241310..3242038 1 NC_017530.1 hypothetical protein 3242038 12521065 PPUBIRD1_2884 Pseudomonas putida BIRD-1 hypothetical protein YP_005930701.1 3241310 D 931281 CDS YP_005930702.1 386012425 12521066 complement(3242350..3242973) 1 NC_017530.1 Urease accessory protein ureG; protein UreG 3242973 ureG 12521066 ureG Pseudomonas putida BIRD-1 protein UreG YP_005930702.1 3242350 R 931281 CDS YP_005930703.1 386012426 12521067 complement(3242985..3243659) 1 NC_017530.1 urease accessory protein ureF 3243659 12521067 PPUBIRD1_2886 Pseudomonas putida BIRD-1 urease accessory protein ureF YP_005930703.1 3242985 R 931281 CDS YP_005930704.1 386012427 12521068 complement(3243659..3244204) 1 NC_017530.1 HupE/UreJ protein; UreJ 3244204 ureJ 12521068 ureJ Pseudomonas putida BIRD-1 UreJ YP_005930704.1 3243659 R 931281 CDS YP_005930705.1 386012428 12521069 complement(3244223..3244726) 1 NC_017530.1 Urease accessory protein ureE; UreE 3244726 ureE 12521069 ureE Pseudomonas putida BIRD-1 UreE YP_005930705.1 3244223 R 931281 CDS YP_005930706.1 386012429 12521070 complement(3244736..3246439) 1 NC_017530.1 Urease subunit alpha; protein UreC 3246439 ureC 12521070 ureC Pseudomonas putida BIRD-1 protein UreC YP_005930706.1 3244736 R 931281 CDS YP_005930707.1 386012430 12521071 complement(3246436..3246753) 1 NC_017530.1 Urease subunit beta; protein UreB 3246753 ureB 12521071 ureB Pseudomonas putida BIRD-1 protein UreB YP_005930707.1 3246436 R 931281 CDS YP_005930708.1 386012431 12521072 complement(3246773..3247075) 1 NC_017530.1 Urease subunit gamma; UreA protein 3247075 ureA 12521072 ureA Pseudomonas putida BIRD-1 UreA protein YP_005930708.1 3246773 R 931281 CDS YP_005930709.1 386012432 12521073 complement(3247085..3247918) 1 NC_017530.1 urease accessory protein ureD 3247918 12521073 PPUBIRD1_2892 Pseudomonas putida BIRD-1 urease accessory protein ureD YP_005930709.1 3247085 R 931281 CDS YP_005930710.1 386012433 12521074 complement(3248196..3249110) 1 NC_017530.1 Phage integrase family protein 3249110 12521074 PPUBIRD1_2893 Pseudomonas putida BIRD-1 Phage integrase family protein YP_005930710.1 3248196 R 931281 CDS YP_005930711.1 386012434 12521075 3249326..3250507 1 NC_017530.1 NnrS family protein 3250507 12521075 PPUBIRD1_2894 Pseudomonas putida BIRD-1 NnrS family protein YP_005930711.1 3249326 D 931281 CDS YP_005930712.1 386012435 12521076 complement(3250606..3252867) 1 NC_017530.1 DEAD/DEAH box helicase 3252867 12521076 PPUBIRD1_2895 Pseudomonas putida BIRD-1 DEAD/DEAH box helicase YP_005930712.1 3250606 R 931281 CDS YP_005930713.1 386012436 12521077 complement(3252864..3254513) 1 NC_017530.1 VRR-NUC domain-containing protein 3254513 12521077 PPUBIRD1_2896 Pseudomonas putida BIRD-1 VRR-NUC domain-containing protein YP_005930713.1 3252864 R 931281 CDS YP_005930714.1 386012437 12521078 complement(3254639..3255946) 1 NC_017530.1 Major facilitator transporter 3255946 12521078 PPUBIRD1_2897 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005930714.1 3254639 R 931281 CDS YP_005930715.1 386012438 12521079 complement(3256046..3257263) 1 NC_017530.1 Fumarylacetoacetate (FAA) hydrolase family protein-like protein 3257263 12521079 PPUBIRD1_2898 Pseudomonas putida BIRD-1 Fumarylacetoacetate (FAA) hydrolase family protein-like protein YP_005930715.1 3256046 R 931281 CDS YP_005930716.1 386012439 12521080 complement(3257284..3258342) 1 NC_017530.1 malate/L-lactate dehydrogenase 3258342 12521080 PPUBIRD1_2899 Pseudomonas putida BIRD-1 malate/L-lactate dehydrogenase YP_005930716.1 3257284 R 931281 CDS YP_005930717.1 386012440 12521081 complement(3258378..3259919) 1 NC_017530.1 UxaA family hydrolase 3259919 12521081 PPUBIRD1_2900 Pseudomonas putida BIRD-1 UxaA family hydrolase YP_005930717.1 3258378 R 931281 CDS YP_005930718.1 386012441 12521082 complement(3260066..3261025) 1 NC_017530.1 LysR family transcriptional regulator 3261025 12521082 PPUBIRD1_2901 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930718.1 3260066 R 931281 CDS YP_005930719.1 386012442 12521083 complement(3261053..3262000) 1 NC_017530.1 LysR family transcriptional regulator 3262000 12521083 PPUBIRD1_2902 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930719.1 3261053 R 931281 CDS YP_005930720.1 386012443 12521084 3262102..3263415 1 NC_017530.1 mandelate racemase/muconate lactonizing protein 3263415 12521084 PPUBIRD1_2903 Pseudomonas putida BIRD-1 mandelate racemase/muconate lactonizing protein YP_005930720.1 3262102 D 931281 CDS YP_005930721.1 386012444 12521085 3263483..3264784 1 NC_017530.1 Major facilitator transporter 3264784 12521085 PPUBIRD1_2904 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005930721.1 3263483 D 931281 CDS YP_005930722.1 386012445 12521086 complement(3264971..3266266) 1 NC_017530.1 GntR family transcriptional regulator 3266266 12521086 PPUBIRD1_2905 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005930722.1 3264971 R 931281 CDS YP_005930723.1 386012446 12521087 complement(3266266..3267651) 1 NC_017530.1 hypothetical protein 3267651 12521087 PPUBIRD1_2906 Pseudomonas putida BIRD-1 hypothetical protein YP_005930723.1 3266266 R 931281 CDS YP_005930724.1 386012447 12521088 complement(3268169..3269191) 1 NC_017530.1 Alcohol dehydrogenase, zinc-containing 3269191 12521088 PPUBIRD1_2907 Pseudomonas putida BIRD-1 Alcohol dehydrogenase, zinc-containing YP_005930724.1 3268169 R 931281 CDS YP_005930725.1 386012448 12521089 3269398..3270312 1 NC_017530.1 LysR family transcriptional regulator; TtgS 3270312 ttgS 12521089 ttgS Pseudomonas putida BIRD-1 TtgS YP_005930725.1 3269398 D 931281 CDS YP_005930726.1 386012449 12521090 3270457..3270774 1 NC_017530.1 AbrB family transcriptional regulator 3270774 12521090 PPUBIRD1_2909 Pseudomonas putida BIRD-1 AbrB family transcriptional regulator YP_005930726.1 3270457 D 931281 CDS YP_005930727.1 386012450 12521091 3270774..3271235 1 NC_017530.1 hypothetical protein 3271235 12521091 PPUBIRD1_2910 Pseudomonas putida BIRD-1 hypothetical protein YP_005930727.1 3270774 D 931281 CDS YP_005930728.1 386012451 12521092 3271473..3272051 1 NC_017530.1 Oxidoreductase, putative 3272051 12521092 PPUBIRD1_2911 Pseudomonas putida BIRD-1 Oxidoreductase, putative YP_005930728.1 3271473 D 931281 CDS YP_005930729.1 386012452 12521093 3272216..3272599 1 NC_017530.1 MerR family transcriptional regulator 3272599 12521093 PPUBIRD1_2912 Pseudomonas putida BIRD-1 MerR family transcriptional regulator YP_005930729.1 3272216 D 931281 CDS YP_005930730.1 386012453 12521094 complement(3272669..3275278) 1 NC_017530.1 RND efflux transporter 3275278 12521094 PPUBIRD1_2913 Pseudomonas putida BIRD-1 RND efflux transporter YP_005930730.1 3272669 R 931281 CDS YP_005930731.1 386012454 12521095 complement(3275312..3276148) 1 NC_017530.1 hypothetical protein 3276148 12521095 PPUBIRD1_2914 Pseudomonas putida BIRD-1 hypothetical protein YP_005930731.1 3275312 R 931281 CDS YP_005930732.1 386012455 12521096 complement(3276199..3277452) 1 NC_017530.1 hypothetical protein 3277452 12521096 PPUBIRD1_2915 Pseudomonas putida BIRD-1 hypothetical protein YP_005930732.1 3276199 R 931281 CDS YP_005930733.1 386012456 12521097 complement(3277485..3278249) 1 NC_017530.1 short-chain dehydrogenase 3278249 12521097 PPUBIRD1_2916 Pseudomonas putida BIRD-1 short-chain dehydrogenase YP_005930733.1 3277485 R 931281 CDS YP_005930734.1 386012457 12521098 complement(3278246..3278983) 1 NC_017530.1 short-chain dehydrogenase 3278983 12521098 PPUBIRD1_2917 Pseudomonas putida BIRD-1 short-chain dehydrogenase YP_005930734.1 3278246 R 931281 CDS YP_005930735.1 386012458 12521099 complement(3278993..3281863) 1 NC_017530.1 Pyridoxalphosphate dependent aminotransferase, class III 3281863 12521099 PPUBIRD1_2918 Pseudomonas putida BIRD-1 Pyridoxalphosphate dependent aminotransferase, class III YP_005930735.1 3278993 R 931281 CDS YP_005930736.1 386012459 12521100 complement(3281902..3283113) 1 NC_017530.1 Beta-ketoacyl synthase 3283113 12521100 PPUBIRD1_2919 Pseudomonas putida BIRD-1 Beta-ketoacyl synthase YP_005930736.1 3281902 R 931281 CDS YP_005930737.1 386012460 12521101 complement(3283110..3284408) 1 NC_017530.1 3-oxoacyl-(acyl-carrier-protein) synthase II 3284408 12521101 PPUBIRD1_2920 Pseudomonas putida BIRD-1 3-oxoacyl-(acyl-carrier-protein) synthase II YP_005930737.1 3283110 R 931281 CDS YP_005930738.1 386012461 12521102 complement(3284405..3285319) 1 NC_017530.1 Beta-ketoacyl synthase, putative 3285319 12521102 PPUBIRD1_2921 Pseudomonas putida BIRD-1 Beta-ketoacyl synthase, putative YP_005930738.1 3284405 R 931281 CDS YP_005930739.1 386012462 12521103 complement(3285489..3286763) 1 NC_017530.1 3-oxoacyl-(acyl-carrier-protein) synthase II 3286763 12521103 PPUBIRD1_2922 Pseudomonas putida BIRD-1 3-oxoacyl-(acyl-carrier-protein) synthase II YP_005930739.1 3285489 R 931281 CDS YP_005930740.1 386012463 12521104 complement(3286775..3287344) 1 NC_017530.1 Acyl carrier protein, putative 3287344 12521104 PPUBIRD1_2923 Pseudomonas putida BIRD-1 Acyl carrier protein, putative YP_005930740.1 3286775 R 931281 CDS YP_005930741.1 386012464 12521105 complement(3287636..3287791) 1 NC_017530.1 citrate transporter 3287791 12521105 PPUBIRD1_2924 Pseudomonas putida BIRD-1 citrate transporter YP_005930741.1 3287636 R 931281 CDS YP_005930742.1 386012465 12521106 complement(3287791..3288942) 1 NC_017530.1 citrate transporter 3288942 12521106 PPUBIRD1_2925 Pseudomonas putida BIRD-1 citrate transporter YP_005930742.1 3287791 R 931281 CDS YP_005930743.1 386012466 12521107 complement(3289199..3290377) 1 NC_017530.1 Putative ferredoxin 3290377 12521107 PPUBIRD1_2926 Pseudomonas putida BIRD-1 Putative ferredoxin YP_005930743.1 3289199 R 931281 CDS YP_005930744.1 386012467 12521108 complement(3290358..3291812) 1 NC_017530.1 Tricarballylate dehydrogenase 3291812 12521108 PPUBIRD1_2927 Pseudomonas putida BIRD-1 Tricarballylate dehydrogenase YP_005930744.1 3290358 R 931281 CDS YP_005930745.1 386012468 12521109 complement(3291953..3292873) 1 NC_017530.1 LysR family transcriptional regulator 3292873 12521109 PPUBIRD1_2928 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930745.1 3291953 R 931281 CDS YP_005930746.1 386012469 12521110 3293072..3294061 1 NC_017530.1 UspA domain-containing protein 3294061 12521110 PPUBIRD1_2929 Pseudomonas putida BIRD-1 UspA domain-containing protein YP_005930746.1 3293072 D 931281 CDS YP_005930747.1 386012470 12521111 3294157..3295116 1 NC_017530.1 Ribose-phosphate pyrophosphokinase family protein 3295116 12521111 PPUBIRD1_2930 Pseudomonas putida BIRD-1 Ribose-phosphate pyrophosphokinase family protein YP_005930747.1 3294157 D 931281 CDS YP_005930748.1 386012471 12521112 3295294..3295863 1 NC_017530.1 Acetyltransferase 3295863 12521112 PPUBIRD1_2931 Pseudomonas putida BIRD-1 Acetyltransferase YP_005930748.1 3295294 D 931281 CDS YP_005930749.1 386012472 12521113 3296206..3296721 1 NC_017530.1 N-acetyltransferase GCN5 3296721 12521113 PPUBIRD1_2932 Pseudomonas putida BIRD-1 N-acetyltransferase GCN5 YP_005930749.1 3296206 D 931281 CDS YP_005930750.1 386012473 12521114 3296718..3297077 1 NC_017530.1 hypothetical protein 3297077 12521114 PPUBIRD1_2933 Pseudomonas putida BIRD-1 hypothetical protein YP_005930750.1 3296718 D 931281 CDS YP_005930751.1 386012474 12521115 complement(3297414..3298301) 1 NC_017530.1 MerR family transcriptional regulator 3298301 12521115 PPUBIRD1_2934 Pseudomonas putida BIRD-1 MerR family transcriptional regulator YP_005930751.1 3297414 R 931281 CDS YP_005930752.1 386012475 12521116 3298455..3298901 1 NC_017530.1 Putative PAS/PAC sensor protein 3298901 12521116 PPUBIRD1_2935 Pseudomonas putida BIRD-1 Putative PAS/PAC sensor protein YP_005930752.1 3298455 D 931281 CDS YP_005930753.1 386012476 12521117 3299006..3299428 1 NC_017530.1 hypothetical protein 3299428 12521117 PPUBIRD1_2936 Pseudomonas putida BIRD-1 hypothetical protein YP_005930753.1 3299006 D 931281 CDS YP_005930754.1 386012477 12521118 3299425..3300177 1 NC_017530.1 Short chain dehydrogenase/reductase family oxidoreductase 3300177 12521118 PPUBIRD1_2937 Pseudomonas putida BIRD-1 Short chain dehydrogenase/reductase family oxidoreductase YP_005930754.1 3299425 D 931281 CDS YP_005930755.1 386012478 12521119 3300184..3301431 1 NC_017530.1 Amine oxidase 3301431 12521119 PPUBIRD1_2938 Pseudomonas putida BIRD-1 Amine oxidase YP_005930755.1 3300184 D 931281 CDS YP_005930756.1 386012479 12521120 3301509..3302237 1 NC_017530.1 hypothetical protein 3302237 12521120 PPUBIRD1_2939 Pseudomonas putida BIRD-1 hypothetical protein YP_005930756.1 3301509 D 931281 CDS YP_005930757.1 386012480 12521121 3302209..3303474 1 NC_017530.1 putative cyclopropane fatty acid synthase A; CfaA 3303474 cfaA 12521121 cfaA Pseudomonas putida BIRD-1 CfaA YP_005930757.1 3302209 D 931281 CDS YP_005930758.1 386012481 12521122 3303474..3303962 1 NC_017530.1 hypothetical protein 3303962 12521122 PPUBIRD1_2941 Pseudomonas putida BIRD-1 hypothetical protein YP_005930758.1 3303474 D 931281 CDS YP_005930759.1 386012482 12521123 complement(3304079..3305605) 1 NC_017530.1 Deoxyribodipyrimidine photolyase-related protein 3305605 12521123 PPUBIRD1_2942 Pseudomonas putida BIRD-1 Deoxyribodipyrimidine photolyase-related protein YP_005930759.1 3304079 R 931281 CDS YP_005930760.1 386012483 12521124 complement(3305614..3305919) 1 NC_017530.1 hypothetical protein 3305919 12521124 PPUBIRD1_2943 Pseudomonas putida BIRD-1 hypothetical protein YP_005930760.1 3305614 R 931281 CDS YP_005930761.1 386012484 12521125 complement(3305916..3306452) 1 NC_017530.1 hypothetical protein 3306452 12521125 PPUBIRD1_2944 Pseudomonas putida BIRD-1 hypothetical protein YP_005930761.1 3305916 R 931281 CDS YP_005930762.1 386012485 12521126 complement(3306455..3306991) 1 NC_017530.1 hypothetical protein 3306991 12521126 PPUBIRD1_2945 Pseudomonas putida BIRD-1 hypothetical protein YP_005930762.1 3306455 R 931281 CDS YP_005930763.1 386012486 12521127 3307150..3307641 1 NC_017530.1 hypothetical protein 3307641 12521127 PPUBIRD1_2946 Pseudomonas putida BIRD-1 hypothetical protein YP_005930763.1 3307150 D 931281 CDS YP_005930764.1 386012487 12521128 3307719..3308489 1 NC_017530.1 C-factor, putative 3308489 12521128 PPUBIRD1_2947 Pseudomonas putida BIRD-1 C-factor, putative YP_005930764.1 3307719 D 931281 CDS YP_005930765.1 386012488 12521129 3308586..3309278 1 NC_017530.1 hypothetical protein 3309278 12521129 PPUBIRD1_2948 Pseudomonas putida BIRD-1 hypothetical protein YP_005930765.1 3308586 D 931281 CDS YP_005930766.1 386012489 12521130 3309368..3309910 1 NC_017530.1 protease PfpI; PfpI 3309910 pfpI 12521130 pfpI Pseudomonas putida BIRD-1 PfpI YP_005930766.1 3309368 D 931281 CDS YP_005930767.1 386012490 12521131 complement(3309891..3310430) 1 NC_017530.1 hypothetical protein 3310430 12521131 PPUBIRD1_2950 Pseudomonas putida BIRD-1 hypothetical protein YP_005930767.1 3309891 R 931281 CDS YP_005930768.1 386012491 12521132 3310751..3311542 1 NC_017530.1 Short chain dehydrogenase/reductase family oxidoreductase 3311542 12521132 PPUBIRD1_2951 Pseudomonas putida BIRD-1 Short chain dehydrogenase/reductase family oxidoreductase YP_005930768.1 3310751 D 931281 CDS YP_005930769.1 386012492 12521133 3311562..3311777 1 NC_017530.1 hemerythrin HHE cation binding domain-containing protein 3311777 12521133 PPUBIRD1_2952 Pseudomonas putida BIRD-1 hemerythrin HHE cation binding domain-containing protein YP_005930769.1 3311562 D 931281 CDS YP_005930770.1 386012493 12521134 3311774..3312073 1 NC_017530.1 hypothetical protein 3312073 12521134 PPUBIRD1_2953 Pseudomonas putida BIRD-1 hypothetical protein YP_005930770.1 3311774 D 931281 CDS YP_005930771.1 386012494 12521135 3312259..3312606 1 NC_017530.1 Regulatory protein, ArsR 3312606 12521135 PPUBIRD1_2954 Pseudomonas putida BIRD-1 Regulatory protein, ArsR YP_005930771.1 3312259 D 931281 CDS YP_005930772.1 386012495 12521136 3312628..3313911 1 NC_017530.1 arsenite efflux transporter; ArsB 3313911 arsB 12521136 arsB Pseudomonas putida BIRD-1 ArsB YP_005930772.1 3312628 D 931281 CDS YP_005930773.1 386012496 12521137 3313940..3314410 1 NC_017530.1 arsenate reductase; protein ArsC 3314410 arsC 12521137 arsC Pseudomonas putida BIRD-1 protein ArsC YP_005930773.1 3313940 D 931281 CDS YP_005930774.1 386012497 12521138 3314424..3315125 1 NC_017530.1 arsH protein; ArsH 3315125 arsH 12521138 arsH Pseudomonas putida BIRD-1 ArsH YP_005930774.1 3314424 D 931281 CDS YP_005930775.1 386012498 12521139 complement(3315138..3316502) 1 NC_017530.1 Sensor histidine kinase 3316502 12521139 PPUBIRD1_2958 Pseudomonas putida BIRD-1 Sensor histidine kinase YP_005930775.1 3315138 R 931281 CDS YP_005930776.1 386012499 12521140 complement(3316499..3317161) 1 NC_017530.1 DNA-binding response regulator 3317161 12521140 PPUBIRD1_2959 Pseudomonas putida BIRD-1 DNA-binding response regulator YP_005930776.1 3316499 R 931281 CDS YP_005930777.1 386012500 12521141 complement(3317164..3317805) 1 NC_017530.1 hypothetical protein 3317805 12521141 PPUBIRD1_2960 Pseudomonas putida BIRD-1 hypothetical protein YP_005930777.1 3317164 R 931281 CDS YP_005930778.1 386012501 12521142 complement(3317802..3318608) 1 NC_017530.1 short-chain dehydrogenase 3318608 12521142 PPUBIRD1_2961 Pseudomonas putida BIRD-1 short-chain dehydrogenase YP_005930778.1 3317802 R 931281 CDS YP_005930779.1 386012502 12521143 complement(3318595..3319275) 1 NC_017530.1 hypothetical protein 3319275 12521143 PPUBIRD1_2962 Pseudomonas putida BIRD-1 hypothetical protein YP_005930779.1 3318595 R 931281 CDS YP_005930780.1 386012503 12521144 complement(3319284..3320753) 1 NC_017530.1 Long-chain-fatty-acid--CoA ligase, putative 3320753 12521144 PPUBIRD1_2963 Pseudomonas putida BIRD-1 Long-chain-fatty-acid--CoA ligase, putative YP_005930780.1 3319284 R 931281 CDS YP_005930781.1 386012504 12521145 complement(3320743..3321423) 1 NC_017530.1 hypothetical protein 3321423 12521145 PPUBIRD1_2964 Pseudomonas putida BIRD-1 hypothetical protein YP_005930781.1 3320743 R 931281 CDS YP_005930782.1 386012505 12521146 complement(3321540..3322337) 1 NC_017530.1 Exodeoxyribonuclease III 3322337 12521146 PPUBIRD1_2965 Pseudomonas putida BIRD-1 Exodeoxyribonuclease III YP_005930782.1 3321540 R 931281 CDS YP_005930783.1 386012506 12521147 complement(3322334..3322576) 1 NC_017530.1 hypothetical protein 3322576 12521147 PPUBIRD1_2966 Pseudomonas putida BIRD-1 hypothetical protein YP_005930783.1 3322334 R 931281 CDS YP_005930784.1 386012507 12521148 complement(3322642..3322899) 1 NC_017530.1 hypothetical protein 3322899 12521148 PPUBIRD1_2967 Pseudomonas putida BIRD-1 hypothetical protein YP_005930784.1 3322642 R 931281 CDS YP_005930785.1 386012508 12521149 3323203..3323631 1 NC_017530.1 hypothetical protein 3323631 12521149 PPUBIRD1_2968 Pseudomonas putida BIRD-1 hypothetical protein YP_005930785.1 3323203 D 931281 CDS YP_005930786.1 386012509 12521150 complement(3323786..3324970) 1 NC_017530.1 M20/M25/M40 family peptidase 3324970 12521150 PPUBIRD1_2969 Pseudomonas putida BIRD-1 M20/M25/M40 family peptidase YP_005930786.1 3323786 R 931281 CDS YP_005930787.1 386012510 12521151 complement(3324972..3326273) 1 NC_017530.1 Major facilitator transporter 3326273 12521151 PPUBIRD1_2970 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005930787.1 3324972 R 931281 CDS YP_005930788.1 386012511 12521152 3326647..3327777 1 NC_017530.1 hypothetical protein 3327777 12521152 PPUBIRD1_2971 Pseudomonas putida BIRD-1 hypothetical protein YP_005930788.1 3326647 D 931281 CDS YP_005930789.1 386012512 12521153 complement(3327754..3328692) 1 NC_017530.1 LysR family transcriptional regulator 3328692 12521153 PPUBIRD1_2972 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930789.1 3327754 R 931281 CDS YP_005930790.1 386012513 12521154 complement(3328779..3329279) 1 NC_017530.1 Redoxin domain-containing protein 3329279 12521154 PPUBIRD1_2973 Pseudomonas putida BIRD-1 Redoxin domain-containing protein YP_005930790.1 3328779 R 931281 CDS YP_005930791.1 386012514 12521155 3329511..3330494 1 NC_017530.1 hypothetical protein 3330494 12521155 PPUBIRD1_2974 Pseudomonas putida BIRD-1 hypothetical protein YP_005930791.1 3329511 D 931281 CDS YP_005930792.1 386012515 12521156 3330470..3331555 1 NC_017530.1 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 3331555 12521156 PPUBIRD1_2975 Pseudomonas putida BIRD-1 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_005930792.1 3330470 D 931281 CDS YP_005930793.1 386012516 12521157 3331581..3332090 1 NC_017530.1 Flavin reductase domain-containing protein 3332090 12521157 PPUBIRD1_2976 Pseudomonas putida BIRD-1 Flavin reductase domain-containing protein YP_005930793.1 3331581 D 931281 CDS YP_005930794.1 386012517 12521158 3332189..3333118 1 NC_017530.1 MetR; MetR_2 3333118 metR_2 12521158 metR_2 Pseudomonas putida BIRD-1 MetR_2 YP_005930794.1 3332189 D 931281 CDS YP_005930795.1 386012518 12521159 complement(3333185..3334072) 1 NC_017530.1 LysR family transcriptional regulator 3334072 12521159 PPUBIRD1_2978 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930795.1 3333185 R 931281 CDS YP_005930796.1 386012519 12521160 3334168..3335610 1 NC_017530.1 Aldehyde dehydrogenase family protein 3335610 12521160 PPUBIRD1_2979 Pseudomonas putida BIRD-1 Aldehyde dehydrogenase family protein YP_005930796.1 3334168 D 931281 CDS YP_005930797.1 386012520 12521161 3335624..3336610 1 NC_017530.1 Peptidase M19, renal dipeptidase 3336610 12521161 PPUBIRD1_2980 Pseudomonas putida BIRD-1 Peptidase M19, renal dipeptidase YP_005930797.1 3335624 D 931281 CDS YP_005930798.1 386012521 12521162 3336666..3338216 1 NC_017530.1 BCCT family transporter 3338216 12521162 PPUBIRD1_2981 Pseudomonas putida BIRD-1 BCCT family transporter YP_005930798.1 3336666 D 931281 CDS YP_005930799.1 386012522 12521163 3338243..3339937 1 NC_017530.1 hypothetical protein 3339937 12521163 PPUBIRD1_2982 Pseudomonas putida BIRD-1 hypothetical protein YP_005930799.1 3338243 D 931281 CDS YP_005930800.1 386012523 12521164 3339940..3340635 1 NC_017530.1 hypothetical protein 3340635 12521164 PPUBIRD1_2983 Pseudomonas putida BIRD-1 hypothetical protein YP_005930800.1 3339940 D 931281 CDS YP_005930801.1 386012524 12521165 3340663..3341034 1 NC_017530.1 Endoribonuclease, putative 3341034 12521165 PPUBIRD1_2984 Pseudomonas putida BIRD-1 Endoribonuclease, putative YP_005930801.1 3340663 D 931281 CDS YP_005930802.1 386012525 12521166 3341466..3342875 1 NC_017530.1 hypothetical protein 3342875 12521166 PPUBIRD1_2985 Pseudomonas putida BIRD-1 hypothetical protein YP_005930802.1 3341466 D 931281 CDS YP_005930803.1 386012526 12521167 3342879..3343829 1 NC_017530.1 hypothetical protein 3343829 12521167 PPUBIRD1_2986 Pseudomonas putida BIRD-1 hypothetical protein YP_005930803.1 3342879 D 931281 CDS YP_005930804.1 386012527 12521168 3343826..3344605 1 NC_017530.1 Transglutaminase-like domain-containing protein 3344605 12521168 PPUBIRD1_2987 Pseudomonas putida BIRD-1 Transglutaminase-like domain-containing protein YP_005930804.1 3343826 D 931281 CDS YP_005930805.1 386012528 12521169 3344679..3345401 1 NC_017530.1 hypothetical protein 3345401 12521169 PPUBIRD1_2988 Pseudomonas putida BIRD-1 hypothetical protein YP_005930805.1 3344679 D 931281 CDS YP_005930806.1 386012529 12521170 3345869..3347155 1 NC_017530.1 gluconate transporter 3347155 12521170 PPUBIRD1_2989 Pseudomonas putida BIRD-1 gluconate transporter YP_005930806.1 3345869 D 931281 CDS YP_005930807.1 386012530 12521171 3347190..3348539 1 NC_017530.1 D-serine dehydratase 3348539 12521171 PPUBIRD1_2990 Pseudomonas putida BIRD-1 D-serine dehydratase YP_005930807.1 3347190 D 931281 CDS YP_005930808.1 386012531 12521172 3348575..3349522 1 NC_017530.1 DNA-binding transcriptional regulator DsdC 3349522 12521172 PPUBIRD1_2991 Pseudomonas putida BIRD-1 DNA-binding transcriptional regulator DsdC YP_005930808.1 3348575 D 931281 CDS YP_005930809.1 386012532 12521173 complement(3349599..3351263) 1 NC_017530.1 PAS/PAC sensor hybrid histidine kinase 3351263 12521173 PPUBIRD1_2992 Pseudomonas putida BIRD-1 PAS/PAC sensor hybrid histidine kinase YP_005930809.1 3349599 R 931281 CDS YP_005930810.1 386012533 12521174 complement(3351247..3352410) 1 NC_017530.1 Iron-containing alcohol dehydrogenase 3352410 12521174 PPUBIRD1_2993 Pseudomonas putida BIRD-1 Iron-containing alcohol dehydrogenase YP_005930810.1 3351247 R 931281 CDS YP_005930811.1 386012534 12521175 complement(3352500..3352772) 1 NC_017530.1 Coenzyme PQQ synthesis protein D 2 3352772 12521175 PPUBIRD1_2994 Pseudomonas putida BIRD-1 Coenzyme PQQ synthesis protein D 2 YP_005930811.1 3352500 R 931281 CDS YP_005930812.1 386012535 12521176 complement(3353128..3354648) 1 NC_017530.1 Aldehyde dehydrogenase 3354648 12521176 PPUBIRD1_2995 Pseudomonas putida BIRD-1 Aldehyde dehydrogenase YP_005930812.1 3353128 R 931281 CDS YP_005930813.1 386012536 12521177 complement(3354965..3356752) 1 NC_017530.1 Pyrrolo-quinoline quinone 3356752 12521177 PPUBIRD1_2997 Pseudomonas putida BIRD-1 Pyrrolo-quinoline quinone YP_005930813.1 3354965 R 931281 CDS YP_005930814.1 386012537 12521178 complement(3356947..3357870) 1 NC_017530.1 Beta-lactamase domain protein 3357870 12521178 PPUBIRD1_2998 Pseudomonas putida BIRD-1 Beta-lactamase domain protein YP_005930814.1 3356947 R 931281 CDS YP_005930815.1 386012538 12521179 complement(3357909..3358670) 1 NC_017530.1 hypothetical protein 3358670 12521179 PPUBIRD1_2999 Pseudomonas putida BIRD-1 hypothetical protein YP_005930815.1 3357909 R 931281 CDS YP_005930816.1 386012539 12521180 complement(3358679..3359554) 1 NC_017530.1 Extracellular solute-binding protein 3359554 12521180 PPUBIRD1_3000 Pseudomonas putida BIRD-1 Extracellular solute-binding protein YP_005930816.1 3358679 R 931281 CDS YP_005930817.1 386012540 12521181 complement(3359560..3360021) 1 NC_017530.1 Cytochrome c-type protein 3360021 12521181 PPUBIRD1_3001 Pseudomonas putida BIRD-1 Cytochrome c-type protein YP_005930817.1 3359560 R 931281 CDS YP_005930818.1 386012541 12521182 3360276..3362171 1 NC_017530.1 Quinoprotein ethanol dehydrogenase; QedH 3362171 qedH 12521182 qedH Pseudomonas putida BIRD-1 QedH YP_005930818.1 3360276 D 931281 CDS YP_005930819.1 386012542 12521183 3362238..3362897 1 NC_017530.1 Pentapeptide repeat-containing protein 3362897 12521183 PPUBIRD1_3003 Pseudomonas putida BIRD-1 Pentapeptide repeat-containing protein YP_005930819.1 3362238 D 931281 CDS YP_005930820.1 386012543 12521184 complement(3363252..3363890) 1 NC_017530.1 Two component LuxR family transcriptional regulator 3363890 12521184 PPUBIRD1_3004 Pseudomonas putida BIRD-1 Two component LuxR family transcriptional regulator YP_005930820.1 3363252 R 931281 CDS YP_005930821.1 386012544 12521185 complement(3363890..3365164) 1 NC_017530.1 Integral membrane sensor signal transduction histidine kinase 3365164 12521185 PPUBIRD1_3005 Pseudomonas putida BIRD-1 Integral membrane sensor signal transduction histidine kinase YP_005930821.1 3363890 R 931281 CDS YP_005930822.1 386012545 12521186 3365315..3366508 1 NC_017530.1 branched-chain amino acid ABC transporter periplasmic component-like protein 3366508 12521186 PPUBIRD1_3006 Pseudomonas putida BIRD-1 branched-chain amino acid ABC transporter periplasmic component-like protein YP_005930822.1 3365315 D 931281 CDS YP_005930823.1 386012546 12521187 3366539..3367528 1 NC_017530.1 YVTN family beta-propeller repeat-containing protein 3367528 12521187 PPUBIRD1_3007 Pseudomonas putida BIRD-1 YVTN family beta-propeller repeat-containing protein YP_005930823.1 3366539 D 931281 CDS YP_005930824.1 386012547 12521188 3367525..3368265 1 NC_017530.1 ABC transporter 3368265 12521188 PPUBIRD1_3008 Pseudomonas putida BIRD-1 ABC transporter YP_005930824.1 3367525 D 931281 CDS YP_005930825.1 386012548 12521189 3368262..3369053 1 NC_017530.1 ABC transporter 3369053 12521189 PPUBIRD1_3009 Pseudomonas putida BIRD-1 ABC transporter YP_005930825.1 3368262 D 931281 CDS YP_005930826.1 386012549 12521190 3369328..3369888 1 NC_017530.1 hypothetical protein 3369888 12521190 PPUBIRD1_3010 Pseudomonas putida BIRD-1 hypothetical protein YP_005930826.1 3369328 D 931281 CDS YP_005930827.1 386012550 12521191 3369943..3370608 1 NC_017530.1 Two component LuxR family transcriptional regulator 3370608 12521191 PPUBIRD1_3011 Pseudomonas putida BIRD-1 Two component LuxR family transcriptional regulator YP_005930827.1 3369943 D 931281 CDS YP_005930828.1 386012551 12521192 complement(3370654..3372552) 1 NC_017530.1 PAS/PAC sensor hybrid histidine kinase 3372552 12521192 PPUBIRD1_3012 Pseudomonas putida BIRD-1 PAS/PAC sensor hybrid histidine kinase YP_005930828.1 3370654 R 931281 CDS YP_005930829.1 386012552 12521193 complement(3372521..3373684) 1 NC_017530.1 hypothetical protein 3373684 12521193 PPUBIRD1_3013 Pseudomonas putida BIRD-1 hypothetical protein YP_005930829.1 3372521 R 931281 CDS YP_005930830.1 386012553 12521194 complement(3373825..3375012) 1 NC_017530.1 hypothetical protein 3375012 12521194 PPUBIRD1_3014 Pseudomonas putida BIRD-1 hypothetical protein YP_005930830.1 3373825 R 931281 CDS YP_005930831.1 386012554 12521195 complement(3375356..3375955) 1 NC_017530.1 hypothetical protein 3375955 12521195 PPUBIRD1_3015 Pseudomonas putida BIRD-1 hypothetical protein YP_005930831.1 3375356 R 931281 CDS YP_005930832.1 386012555 12521196 complement(3375955..3376653) 1 NC_017530.1 hypothetical protein 3376653 12521196 PPUBIRD1_3016 Pseudomonas putida BIRD-1 hypothetical protein YP_005930832.1 3375955 R 931281 CDS YP_005930833.1 386012556 12521197 complement(3376748..3377566) 1 NC_017530.1 Phosphate import ATP-binding protein pstB 1 3377566 12521197 PPUBIRD1_3017 Pseudomonas putida BIRD-1 Phosphate import ATP-binding protein pstB 1 YP_005930833.1 3376748 R 931281 CDS YP_005930834.1 386012557 12521198 complement(3377584..3378477) 1 NC_017530.1 Phosphate ABC transporter, inner membrane subunit PstA 3378477 12521198 PPUBIRD1_3018 Pseudomonas putida BIRD-1 Phosphate ABC transporter, inner membrane subunit PstA YP_005930834.1 3377584 R 931281 CDS YP_005930835.1 386012558 12521199 complement(3378474..3379442) 1 NC_017530.1 Phosphate ABC transporter inner membrane protein 3379442 12521199 PPUBIRD1_3019 Pseudomonas putida BIRD-1 Phosphate ABC transporter inner membrane protein YP_005930835.1 3378474 R 931281 CDS YP_005930836.1 386012559 12521200 complement(3379513..3380544) 1 NC_017530.1 Phosphate ABC transporter, periplasmic phosphate-binding protein 3380544 12521200 PPUBIRD1_3020 Pseudomonas putida BIRD-1 Phosphate ABC transporter, periplasmic phosphate-binding protein YP_005930836.1 3379513 R 931281 CDS YP_005930837.1 386012560 12521201 complement(3380762..3380995) 1 NC_017530.1 hypothetical protein 3380995 12521201 PPUBIRD1_3021 Pseudomonas putida BIRD-1 hypothetical protein YP_005930837.1 3380762 R 931281 CDS YP_005930838.1 386012561 12521202 complement(3381067..3381492) 1 NC_017530.1 Membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG) 3381492 12521202 PPUBIRD1_3022 Pseudomonas putida BIRD-1 Membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG) YP_005930838.1 3381067 R 931281 CDS YP_005930839.1 386012562 12521203 complement(3381489..3381803) 1 NC_017530.1 hypothetical protein 3381803 12521203 PPUBIRD1_3023 Pseudomonas putida BIRD-1 hypothetical protein YP_005930839.1 3381489 R 931281 CDS YP_005930840.1 386012563 12521204 3381910..3382728 1 NC_017530.1 Cro/CI family transcriptional regulator 3382728 12521204 PPUBIRD1_3024 Pseudomonas putida BIRD-1 Cro/CI family transcriptional regulator YP_005930840.1 3381910 D 931281 CDS YP_005930841.1 386012564 12521205 complement(3382718..3383503) 1 NC_017530.1 Hydratase/decarboxylase 3383503 12521205 PPUBIRD1_3025 Pseudomonas putida BIRD-1 Hydratase/decarboxylase YP_005930841.1 3382718 R 931281 CDS YP_005930842.1 386012565 12521206 complement(3383642..3384985) 1 NC_017530.1 Major facilitator family transporter 3384985 12521206 PPUBIRD1_3026 Pseudomonas putida BIRD-1 Major facilitator family transporter YP_005930842.1 3383642 R 931281 CDS YP_005930843.1 386012566 12521207 complement(3385030..3386172) 1 NC_017530.1 Iron-containing alcohol dehydrogenase 3386172 12521207 PPUBIRD1_3027 Pseudomonas putida BIRD-1 Iron-containing alcohol dehydrogenase YP_005930843.1 3385030 R 931281 CDS YP_005930844.1 386012567 12521208 3386315..3387256 1 NC_017530.1 LysR family transcriptional regulator 3387256 12521208 PPUBIRD1_3028 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930844.1 3386315 D 931281 CDS YP_005930845.1 386012568 12521209 3387546..3388421 1 NC_017530.1 UspA domain-containing protein 3388421 12521209 PPUBIRD1_3030 Pseudomonas putida BIRD-1 UspA domain-containing protein YP_005930845.1 3387546 D 931281 CDS YP_005930846.1 386012569 12521210 complement(3388481..3389335) 1 NC_017530.1 Helix-turn-helix domain-containing protein 3389335 12521210 PPUBIRD1_3031 Pseudomonas putida BIRD-1 Helix-turn-helix domain-containing protein YP_005930846.1 3388481 R 931281 CDS YP_005930847.1 386012570 12521211 3389493..3390041 1 NC_017530.1 N-acetyltransferase GCN5 3390041 12521211 PPUBIRD1_3032 Pseudomonas putida BIRD-1 N-acetyltransferase GCN5 YP_005930847.1 3389493 D 931281 CDS YP_005930848.1 386012571 12521212 3390335..3391561 1 NC_017530.1 Major facilitator family transporter 3391561 12521212 PPUBIRD1_3033 Pseudomonas putida BIRD-1 Major facilitator family transporter YP_005930848.1 3390335 D 931281 CDS YP_005930849.1 386012572 12521213 complement(3391667..3392044) 1 NC_017530.1 hypothetical protein 3392044 12521213 PPUBIRD1_3034 Pseudomonas putida BIRD-1 hypothetical protein YP_005930849.1 3391667 R 931281 CDS YP_005930850.1 386012573 12521214 complement(3392066..3394780) 1 NC_017530.1 Magnesium-transporting ATPase, P-type 1 3394780 12521214 PPUBIRD1_3035 Pseudomonas putida BIRD-1 Magnesium-transporting ATPase, P-type 1 YP_005930850.1 3392066 R 931281 CDS YP_005930851.1 386012574 12521215 complement(3395522..3397147) 1 NC_017530.1 methyl-accepting chemotaxis sensory transducer 3397147 12521215 PPUBIRD1_3037 Pseudomonas putida BIRD-1 methyl-accepting chemotaxis sensory transducer YP_005930851.1 3395522 R 931281 CDS YP_005930852.1 386012575 12521216 complement(3397288..3398178) 1 NC_017530.1 Alpha/beta hydrolase fold project 3398178 12521216 PPUBIRD1_3038 Pseudomonas putida BIRD-1 Alpha/beta hydrolase fold project YP_005930852.1 3397288 R 931281 CDS YP_005930853.1 386012576 12521217 complement(3398501..3399997) 1 NC_017530.1 GntR family transcriptional regulator 3399997 12521217 PPUBIRD1_3039 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005930853.1 3398501 R 931281 CDS YP_005930854.1 386012577 12521218 3400076..3401764 1 NC_017530.1 Oxidoreductase FAD-binding subunit 3401764 12521218 PPUBIRD1_3040 Pseudomonas putida BIRD-1 Oxidoreductase FAD-binding subunit YP_005930854.1 3400076 D 931281 CDS YP_005930855.1 386012578 12521219 3401880..3402338 1 NC_017530.1 Acetyltransferase 3402338 12521219 PPUBIRD1_3041 Pseudomonas putida BIRD-1 Acetyltransferase YP_005930855.1 3401880 D 931281 CDS YP_005930856.1 386012579 12521220 complement(3402385..3403557) 1 NC_017530.1 Pas protein 3403557 12521220 PPUBIRD1_3042 Pseudomonas putida BIRD-1 Pas protein YP_005930856.1 3402385 R 931281 CDS YP_005930857.1 386012580 12521221 3403842..3412502 1 NC_017530.1 Protein ndvB 3412502 12521221 PPUBIRD1_3043 Pseudomonas putida BIRD-1 Protein ndvB YP_005930857.1 3403842 D 931281 CDS YP_005930858.1 386012581 12521222 3412574..3413290 1 NC_017530.1 Crp/FNR family transcriptional regulator 3413290 12521222 PPUBIRD1_3044 Pseudomonas putida BIRD-1 Crp/FNR family transcriptional regulator YP_005930858.1 3412574 D 931281 CDS YP_005930859.1 386012582 12521223 complement(3413372..3413884) 1 NC_017530.1 AmiS/UreI transporter 3413884 12521223 PPUBIRD1_3045 Pseudomonas putida BIRD-1 AmiS/UreI transporter YP_005930859.1 3413372 R 931281 CDS YP_005930860.1 386012583 12521224 complement(3413897..3414481) 1 NC_017530.1 Response regulator receiver/ANTAR domain-containing protein 3414481 12521224 PPUBIRD1_3046 Pseudomonas putida BIRD-1 Response regulator receiver/ANTAR domain-containing protein YP_005930860.1 3413897 R 931281 CDS YP_005930861.1 386012584 12521225 complement(3414478..3415635) 1 NC_017530.1 branched-chain amino acid ABC transporter periplasmic component-like protein 3415635 12521225 PPUBIRD1_3047 Pseudomonas putida BIRD-1 branched-chain amino acid ABC transporter periplasmic component-like protein YP_005930861.1 3414478 R 931281 CDS YP_005930862.1 386012585 12521226 complement(3415657..3416778) 1 NC_017530.1 ATPase 3416778 12521226 PPUBIRD1_3048 Pseudomonas putida BIRD-1 ATPase YP_005930862.1 3415657 R 931281 CDS YP_005930863.1 386012586 12521227 complement(3416834..3417877) 1 NC_017530.1 Aliphatic amidase; AmiE 3417877 amiE 12521227 amiE Pseudomonas putida BIRD-1 AmiE YP_005930863.1 3416834 R 931281 CDS YP_005930864.1 386012587 12521228 complement(3418064..3418930) 1 NC_017530.1 Dihydrodipicolinate synthase 3418930 12521228 PPUBIRD1_3051 Pseudomonas putida BIRD-1 Dihydrodipicolinate synthase YP_005930864.1 3418064 R 931281 CDS YP_005930865.1 386012588 12521229 complement(3419268..3422786) 1 NC_017530.1 Cellulose synthase subunit BcsC 3422786 12521229 PPUBIRD1_3052 Pseudomonas putida BIRD-1 Cellulose synthase subunit BcsC YP_005930865.1 3419268 R 931281 CDS YP_005930866.1 386012589 12521230 complement(3422774..3423889) 1 NC_017530.1 Endo-1,4-D-glucanase 3423889 12521230 PPUBIRD1_3053 Pseudomonas putida BIRD-1 Endo-1,4-D-glucanase YP_005930866.1 3422774 R 931281 CDS YP_005930867.1 386012590 12521231 complement(3423889..3426177) 1 NC_017530.1 Cyclic di-GMP-binding protein 3426177 12521231 PPUBIRD1_3054 Pseudomonas putida BIRD-1 Cyclic di-GMP-binding protein YP_005930867.1 3423889 R 931281 CDS YP_005930868.1 386012591 12521232 complement(3426174..3426908) 1 NC_017530.1 cellulose synthase catalytic subunit; BcsA 3426908 bcsA 12521232 bcsA Pseudomonas putida BIRD-1 BcsA YP_005930868.1 3426174 R 931281 CDS YP_005930869.1 386012592 12521233 complement(3426908..3428782) 1 NC_017530.1 Cellulose synthase catalytic subunit; BcsA_2 3428782 bcsA_2 12521233 bcsA_2 Pseudomonas putida BIRD-1 BcsA_2 YP_005930869.1 3426908 R 931281 CDS YP_005930870.1 386012593 12521234 complement(3428779..3429486) 1 NC_017530.1 Cellulose synthase, putative 3429486 12521234 PPUBIRD1_3057 Pseudomonas putida BIRD-1 Cellulose synthase, putative YP_005930870.1 3428779 R 931281 CDS YP_005930871.1 386012594 12521235 complement(3429483..3429701) 1 NC_017530.1 hypothetical protein 3429701 12521235 PPUBIRD1_3058 Pseudomonas putida BIRD-1 hypothetical protein YP_005930871.1 3429483 R 931281 CDS YP_005930872.1 386012595 12521236 complement(3429698..3431311) 1 NC_017530.1 hypothetical protein 3431311 12521236 PPUBIRD1_3059 Pseudomonas putida BIRD-1 hypothetical protein YP_005930872.1 3429698 R 931281 CDS YP_005930873.1 386012596 12521237 complement(3431304..3431489) 1 NC_017530.1 Pfam11120, DUF2636, Protein of unknown function (DUF2636); hypothetical protein 3431489 12521237 PPUBIRD1_3060 Pseudomonas putida BIRD-1 hypothetical protein YP_005930873.1 3431304 R 931281 CDS YP_005930874.1 386012597 12521238 complement(3431486..3432976) 1 NC_017530.1 hypothetical protein 3432976 12521238 PPUBIRD1_3061 Pseudomonas putida BIRD-1 hypothetical protein YP_005930874.1 3431486 R 931281 CDS YP_005930875.1 386012598 12521239 3433279..3435132 1 NC_017530.1 ABC transporter ATP-binding protein 3435132 12521239 PPUBIRD1_3062 Pseudomonas putida BIRD-1 ABC transporter ATP-binding protein YP_005930875.1 3433279 D 931281 CDS YP_005930876.1 386012599 12521240 complement(3435210..3438830) 1 NC_017530.1 ImcF domain-containing protein 3438830 12521240 PPUBIRD1_3063 Pseudomonas putida BIRD-1 ImcF domain-containing protein YP_005930876.1 3435210 R 931281 CDS YP_005930877.1 386012600 12521241 complement(3438827..3440290) 1 NC_017530.1 ImpA domain-containing protein 3440290 12521241 PPUBIRD1_3064 Pseudomonas putida BIRD-1 ImpA domain-containing protein YP_005930877.1 3438827 R 931281 CDS YP_005930878.1 386012601 12521242 complement(3440278..3440634) 1 NC_017530.1 hypothetical protein 3440634 12521242 PPUBIRD1_3065 Pseudomonas putida BIRD-1 hypothetical protein YP_005930878.1 3440278 R 931281 CDS YP_005930879.1 386012602 12521243 3441255..3441758 1 NC_017530.1 hypothetical protein 3441758 12521243 PPUBIRD1_3066 Pseudomonas putida BIRD-1 hypothetical protein YP_005930879.1 3441255 D 931281 CDS YP_005930880.1 386012603 12521244 3441776..3443224 1 NC_017530.1 hypothetical protein 3443224 12521244 PPUBIRD1_3067 Pseudomonas putida BIRD-1 hypothetical protein YP_005930880.1 3441776 D 931281 CDS YP_005930881.1 386012604 12521245 3443215..3445614 1 NC_017530.1 hypothetical protein 3445614 12521245 PPUBIRD1_3068 Pseudomonas putida BIRD-1 hypothetical protein YP_005930881.1 3443215 D 931281 CDS YP_005930882.1 386012605 12521246 3446196..3446510 1 NC_017530.1 hypothetical protein 3446510 12521246 PPUBIRD1_3069 Pseudomonas putida BIRD-1 hypothetical protein YP_005930882.1 3446196 D 931281 CDS YP_005930883.1 386012606 12521247 3446912..3447583 1 NC_017530.1 hypothetical protein 3447583 12521247 PPUBIRD1_3070 Pseudomonas putida BIRD-1 hypothetical protein YP_005930883.1 3446912 D 931281 CDS YP_005930884.1 386012607 12521248 complement(3447960..3448730) 1 NC_017530.1 Beta-ketoadipate pathway transcription regulator 3448730 12521248 PPUBIRD1_3071 Pseudomonas putida BIRD-1 Beta-ketoadipate pathway transcription regulator YP_005930884.1 3447960 R 931281 CDS YP_005930885.1 386012608 12521249 3448887..3449696 1 NC_017530.1 Shikimate dehydrogenase family protein 3449696 12521249 PPUBIRD1_3072 Pseudomonas putida BIRD-1 Shikimate dehydrogenase family protein YP_005930885.1 3448887 D 931281 CDS YP_005930886.1 386012609 12521250 3449701..3451434 1 NC_017530.1 Fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3451434 12521250 PPUBIRD1_3073 Pseudomonas putida BIRD-1 Fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_005930886.1 3449701 D 931281 CDS YP_005930887.1 386012610 12521251 3451419..3451739 1 NC_017530.1 NIPSNAP family containing protein 3451739 12521251 PPUBIRD1_3074 Pseudomonas putida BIRD-1 NIPSNAP family containing protein YP_005930887.1 3451419 D 931281 CDS YP_005930888.1 386012611 12521252 3451781..3453457 1 NC_017530.1 Fumarate reductase/succinate dehydrogenase flavoprotein domain protein 3453457 12521252 PPUBIRD1_3075 Pseudomonas putida BIRD-1 Fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_005930888.1 3451781 D 931281 CDS YP_005930889.1 386012612 12521253 3453746..3455035 1 NC_017530.1 Major facilitator family transporter 3455035 12521253 PPUBIRD1_3076 Pseudomonas putida BIRD-1 Major facilitator family transporter YP_005930889.1 3453746 D 931281 CDS YP_005930890.1 386012613 12521254 complement(3455184..3455999) 1 NC_017530.1 Xylose isomerase domain-containing protein 3455999 12521254 PPUBIRD1_3077 Pseudomonas putida BIRD-1 Xylose isomerase domain-containing protein YP_005930890.1 3455184 R 931281 CDS YP_005930891.1 386012614 12521255 complement(3456029..3457081) 1 NC_017530.1 Oxidoreductase domain protein 3457081 12521255 PPUBIRD1_3078 Pseudomonas putida BIRD-1 Oxidoreductase domain protein YP_005930891.1 3456029 R 931281 CDS YP_005930892.1 386012615 12521256 complement(3457220..3457996) 1 NC_017530.1 IclR family transcriptional regulator 3457996 12521256 PPUBIRD1_3079 Pseudomonas putida BIRD-1 IclR family transcriptional regulator YP_005930892.1 3457220 R 931281 CDS YP_005930893.1 386012616 12521257 3458191..3459903 1 NC_017530.1 Putative FAD-binding dehydrogenase 3459903 12521257 PPUBIRD1_3081 Pseudomonas putida BIRD-1 Putative FAD-binding dehydrogenase YP_005930893.1 3458191 D 931281 CDS YP_005930894.1 386012617 12521258 complement(3460010..3462916) 1 NC_017530.1 Metal dependent phosphohydrolase 3462916 12521258 PPUBIRD1_3082 Pseudomonas putida BIRD-1 Metal dependent phosphohydrolase YP_005930894.1 3460010 R 931281 CDS YP_005930895.1 386012618 12521259 complement(3463122..3463733) 1 NC_017530.1 hypothetical protein 3463733 12521259 PPUBIRD1_3083 Pseudomonas putida BIRD-1 hypothetical protein YP_005930895.1 3463122 R 931281 CDS YP_005930896.1 386012619 12521260 3463843..3465636 1 NC_017530.1 ABC transporter, permease/ATP-binding protein, putative 3465636 12521260 PPUBIRD1_3084 Pseudomonas putida BIRD-1 ABC transporter, permease/ATP-binding protein, putative YP_005930896.1 3463843 D 931281 CDS YP_005930897.1 386012620 12521261 3465630..3467387 1 NC_017530.1 ABC transporter, permease/ATP-binding protein, putative 3467387 12521261 PPUBIRD1_3085 Pseudomonas putida BIRD-1 ABC transporter, permease/ATP-binding protein, putative YP_005930897.1 3465630 D 931281 CDS YP_005930898.1 386012621 12521262 3467387..3468328 1 NC_017530.1 Ferric siderophore ABC transporter, permease protein 3468328 12521262 PPUBIRD1_3086 Pseudomonas putida BIRD-1 Ferric siderophore ABC transporter, permease protein YP_005930898.1 3467387 D 931281 CDS YP_005930899.1 386012622 12521263 3468325..3469266 1 NC_017530.1 Ferric siderophore ABC transporter, permease protein 3469266 12521263 PPUBIRD1_3087 Pseudomonas putida BIRD-1 Ferric siderophore ABC transporter, permease protein YP_005930899.1 3468325 D 931281 CDS YP_005930900.1 386012623 12521264 3469263..3470039 1 NC_017530.1 Ferric siderophore ABC transporter, ATP-binding protein 3470039 12521264 PPUBIRD1_3088 Pseudomonas putida BIRD-1 Ferric siderophore ABC transporter, ATP-binding protein YP_005930900.1 3469263 D 931281 CDS YP_005930901.1 386012624 12521265 3470036..3471025 1 NC_017530.1 Ferric siderophore ABC transporter, periplasmic siderophore-binding protein 3471025 12521265 PPUBIRD1_3089 Pseudomonas putida BIRD-1 Ferric siderophore ABC transporter, periplasmic siderophore-binding protein YP_005930901.1 3470036 D 931281 CDS YP_005930902.1 386012625 12521266 3471143..3473380 1 NC_017530.1 Outer membrane ferric siderophore receptor 3473380 12521266 PPUBIRD1_3090 Pseudomonas putida BIRD-1 Outer membrane ferric siderophore receptor YP_005930902.1 3471143 D 931281 CDS YP_005930903.1 386012626 12521267 complement(3473522..3475015) 1 NC_017530.1 Aldehyde dehydrogenase family protein 3475015 12521267 PPUBIRD1_3091 Pseudomonas putida BIRD-1 Aldehyde dehydrogenase family protein YP_005930903.1 3473522 R 931281 CDS YP_005930904.1 386012627 12521268 complement(3475213..3476595) 1 NC_017530.1 Putative aminotransferase 3476595 12521268 PPUBIRD1_3092 Pseudomonas putida BIRD-1 Putative aminotransferase YP_005930904.1 3475213 R 931281 CDS YP_005930905.1 386012628 12521269 complement(3476638..3477480) 1 NC_017530.1 LuxR family transcriptional regulator 3477480 12521269 PPUBIRD1_3093 Pseudomonas putida BIRD-1 LuxR family transcriptional regulator YP_005930905.1 3476638 R 931281 CDS YP_005930906.1 386012629 12521270 3477763..3479145 1 NC_017530.1 amino acid ABC transporter permease 3479145 12521270 PPUBIRD1_3094 Pseudomonas putida BIRD-1 amino acid ABC transporter permease YP_005930906.1 3477763 D 931281 CDS YP_005930907.1 386012630 12521271 3479298..3480878 1 NC_017530.1 Aldehyde dehydrogenase family protein 3480878 12521271 PPUBIRD1_3095 Pseudomonas putida BIRD-1 Aldehyde dehydrogenase family protein YP_005930907.1 3479298 D 931281 CDS YP_005930908.1 386012631 12521272 3481039..3482412 1 NC_017530.1 Hydroxydechloroatrazine ethylaminohydrolase 3482412 12521272 PPUBIRD1_3096 Pseudomonas putida BIRD-1 Hydroxydechloroatrazine ethylaminohydrolase YP_005930908.1 3481039 D 931281 CDS YP_005930909.1 386012632 12521273 complement(3482526..3483017) 1 NC_017530.1 Acetyltransferase 3483017 12521273 PPUBIRD1_3097 Pseudomonas putida BIRD-1 Acetyltransferase YP_005930909.1 3482526 R 931281 CDS YP_005930910.1 386012633 12521274 3483180..3483770 1 NC_017530.1 Heme oxygenase, putative 3483770 12521274 PPUBIRD1_3098 Pseudomonas putida BIRD-1 Heme oxygenase, putative YP_005930910.1 3483180 D 931281 CDS YP_005930911.1 386012634 12521275 3483970..3484344 1 NC_017530.1 hypothetical protein 3484344 12521275 PPUBIRD1_3099 Pseudomonas putida BIRD-1 hypothetical protein YP_005930911.1 3483970 D 931281 CDS YP_005930912.1 386012635 12521276 complement(3484373..3484528) 1 NC_017530.1 hypothetical protein 3484528 12521276 PPUBIRD1_3100 Pseudomonas putida BIRD-1 hypothetical protein YP_005930912.1 3484373 R 931281 CDS YP_005930913.1 386012636 12521277 3484741..3486495 1 NC_017530.1 hypothetical protein 3486495 12521277 PPUBIRD1_3101 Pseudomonas putida BIRD-1 hypothetical protein YP_005930913.1 3484741 D 931281 CDS YP_005930914.1 386012637 12521278 complement(3486508..3487038) 1 NC_017530.1 hypothetical protein 3487038 12521278 PPUBIRD1_3102 Pseudomonas putida BIRD-1 hypothetical protein YP_005930914.1 3486508 R 931281 CDS YP_005930915.1 386012638 12521279 complement(3487050..3488690) 1 NC_017530.1 hypothetical protein 3488690 12521279 PPUBIRD1_3103 Pseudomonas putida BIRD-1 hypothetical protein YP_005930915.1 3487050 R 931281 CDS YP_005930916.1 386012639 12521280 complement(3488690..3489319) 1 NC_017530.1 Paraquat-inducible protein A 3489319 12521280 PPUBIRD1_3104 Pseudomonas putida BIRD-1 Paraquat-inducible protein A YP_005930916.1 3488690 R 931281 CDS YP_005930917.1 386012640 12521281 complement(3489316..3489912) 1 NC_017530.1 Paraquat-inducible protein A 3489912 12521281 PPUBIRD1_3105 Pseudomonas putida BIRD-1 Paraquat-inducible protein A YP_005930917.1 3489316 R 931281 CDS YP_005930918.1 386012641 12521282 3490063..3490536 1 NC_017530.1 hypothetical protein 3490536 12521282 PPUBIRD1_3106 Pseudomonas putida BIRD-1 hypothetical protein YP_005930918.1 3490063 D 931281 CDS YP_005930919.1 386012642 12521283 complement(3490582..3491493) 1 NC_017530.1 LysR family transcriptional regulator 3491493 12521283 PPUBIRD1_3107 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930919.1 3490582 R 931281 CDS YP_005930920.1 386012643 12521284 3491773..3492159 1 NC_017530.1 Glyoxalase/bleomycin resistance protein/dioxygenase 3492159 12521284 PPUBIRD1_3108 Pseudomonas putida BIRD-1 Glyoxalase/bleomycin resistance protein/dioxygenase YP_005930920.1 3491773 D 931281 CDS YP_005930921.1 386012644 12521285 3492201..3492770 1 NC_017530.1 hypothetical protein 3492770 12521285 PPUBIRD1_3109 Pseudomonas putida BIRD-1 hypothetical protein YP_005930921.1 3492201 D 931281 CDS YP_005930922.1 386012645 12521286 complement(3492924..3494603) 1 NC_017530.1 general substrate transporter 3494603 12521286 PPUBIRD1_3110 Pseudomonas putida BIRD-1 general substrate transporter YP_005930922.1 3492924 R 931281 CDS YP_005930923.1 386012646 12521287 complement(3494862..3495281) 1 NC_017530.1 Glyoxalase/bleomycin resistance protein/dioxygenase 3495281 12521287 PPUBIRD1_3111 Pseudomonas putida BIRD-1 Glyoxalase/bleomycin resistance protein/dioxygenase YP_005930923.1 3494862 R 931281 CDS YP_005930924.1 386012647 12521288 complement(3495357..3496283) 1 NC_017530.1 Alpha/beta hydrolase fold project 3496283 12521288 PPUBIRD1_3112 Pseudomonas putida BIRD-1 Alpha/beta hydrolase fold project YP_005930924.1 3495357 R 931281 CDS YP_005930925.1 386012648 12521289 3496556..3501355 1 NC_017530.1 Leucine-rich repeat-containing protein 3501355 12521289 PPUBIRD1_3113 Pseudomonas putida BIRD-1 Leucine-rich repeat-containing protein YP_005930925.1 3496556 D 931281 CDS YP_005930926.1 386012649 12521290 complement(3501363..3503834) 1 NC_017530.1 UvrD/REP helicase 3503834 12521290 PPUBIRD1_3114 Pseudomonas putida BIRD-1 UvrD/REP helicase YP_005930926.1 3501363 R 931281 CDS YP_005930927.1 386012650 12521291 3504053..3504751 1 NC_017530.1 Pirin domain-containing protein 3504751 12521291 PPUBIRD1_3115 Pseudomonas putida BIRD-1 Pirin domain-containing protein YP_005930927.1 3504053 D 931281 CDS YP_005930928.1 386012651 12521292 3504968..3507739 1 NC_017530.1 Antibiotic biosynthesis protein, putative 3507739 12521292 PPUBIRD1_3116 Pseudomonas putida BIRD-1 Antibiotic biosynthesis protein, putative YP_005930928.1 3504968 D 931281 CDS YP_005930929.1 386012652 12521293 complement(3507766..3508251) 1 NC_017530.1 hypothetical protein 3508251 12521293 PPUBIRD1_3117 Pseudomonas putida BIRD-1 hypothetical protein YP_005930929.1 3507766 R 931281 CDS YP_005930930.1 386012653 12521294 complement(3508574..3510970) 1 NC_017530.1 hypothetical protein 3510970 12521294 PPUBIRD1_3118 Pseudomonas putida BIRD-1 hypothetical protein YP_005930930.1 3508574 R 931281 CDS YP_005930931.1 386012654 12521295 3511267..3512130 1 NC_017530.1 Diguanylate cyclase with PAS/PAC sensor 3512130 12521295 PPUBIRD1_3119 Pseudomonas putida BIRD-1 Diguanylate cyclase with PAS/PAC sensor YP_005930931.1 3511267 D 931281 CDS YP_005930932.1 386012655 12521296 3512148..3513500 1 NC_017530.1 chromate transporter 3513500 12521296 PPUBIRD1_3120 Pseudomonas putida BIRD-1 chromate transporter YP_005930932.1 3512148 D 931281 CDS YP_005930933.1 386012656 12521297 3513512..3514180 1 NC_017530.1 type 12 methyltransferase 3514180 12521297 PPUBIRD1_3121 Pseudomonas putida BIRD-1 type 12 methyltransferase YP_005930933.1 3513512 D 931281 CDS YP_005930934.1 386012657 12521298 complement(3514249..3516156) 1 NC_017530.1 4-hydroxyphenylpyruvate dioxygenase 3516156 12521298 PPUBIRD1_3122 Pseudomonas putida BIRD-1 4-hydroxyphenylpyruvate dioxygenase YP_005930934.1 3514249 R 931281 CDS YP_005930935.1 386012658 12521299 3516446..3517819 1 NC_017530.1 Major facilitator transporter 3517819 12521299 PPUBIRD1_3124 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005930935.1 3516446 D 931281 CDS YP_005930936.1 386012659 12521300 complement(3517933..3519345) 1 NC_017530.1 aromatic-L-amino-acid decarboxylase 3519345 12521300 PPUBIRD1_3125 Pseudomonas putida BIRD-1 aromatic-L-amino-acid decarboxylase YP_005930936.1 3517933 R 931281 CDS YP_005930937.1 386012660 12521301 complement(3519495..3520439) 1 NC_017530.1 LysR family transcriptional regulator 3520439 12521301 PPUBIRD1_3126 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930937.1 3519495 R 931281 CDS YP_005930938.1 386012661 12521302 complement(3520577..3521290) 1 NC_017530.1 hypothetical protein 3521290 12521302 PPUBIRD1_3127 Pseudomonas putida BIRD-1 hypothetical protein YP_005930938.1 3520577 R 931281 CDS YP_005930939.1 386012662 12521303 complement(3521388..3522779) 1 NC_017530.1 FAD dependent oxidoreductase 3522779 12521303 PPUBIRD1_3128 Pseudomonas putida BIRD-1 FAD dependent oxidoreductase YP_005930939.1 3521388 R 931281 CDS YP_005930940.1 386012663 12521304 complement(3522794..3524110) 1 NC_017530.1 Major facilitator transporter 3524110 12521304 PPUBIRD1_3129 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005930940.1 3522794 R 931281 CDS YP_005930941.1 386012664 12521305 3524354..3525223 1 NC_017530.1 LysR family transcriptional regulator 3525223 12521305 PPUBIRD1_3130 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930941.1 3524354 D 931281 CDS YP_005930942.1 386012665 12521306 3525281..3525652 1 NC_017530.1 hypothetical protein 3525652 12521306 PPUBIRD1_3131 Pseudomonas putida BIRD-1 hypothetical protein YP_005930942.1 3525281 D 931281 CDS YP_005930943.1 386012666 12521307 complement(3525642..3526418) 1 NC_017530.1 Trans-aconitate 2-methyltransferase 3526418 12521307 PPUBIRD1_3132 Pseudomonas putida BIRD-1 Trans-aconitate 2-methyltransferase YP_005930943.1 3525642 R 931281 CDS YP_005930944.1 386012667 12521308 3526545..3526712 1 NC_017530.1 hypothetical protein 3526712 12521308 PPUBIRD1_3133 Pseudomonas putida BIRD-1 hypothetical protein YP_005930944.1 3526545 D 931281 CDS YP_005930945.1 386012668 12521309 complement(3526716..3528128) 1 NC_017530.1 amino acid ABC transporter permease 3528128 12521309 PPUBIRD1_3134 Pseudomonas putida BIRD-1 amino acid ABC transporter permease YP_005930945.1 3526716 R 931281 CDS YP_005930946.1 386012669 12521310 3528453..3529877 1 NC_017530.1 GntR family transcriptional regulator 3529877 12521310 PPUBIRD1_3136 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005930946.1 3528453 D 931281 CDS YP_005930947.1 386012670 12521311 complement(3529994..3531016) 1 NC_017530.1 Histone deacetylase superfamily protein 3531016 12521311 PPUBIRD1_3137 Pseudomonas putida BIRD-1 Histone deacetylase superfamily protein YP_005930947.1 3529994 R 931281 CDS YP_005930948.1 386012671 12521312 complement(3531016..3532257) 1 NC_017530.1 Allantoate amidohydrolase 3532257 12521312 PPUBIRD1_3138 Pseudomonas putida BIRD-1 Allantoate amidohydrolase YP_005930948.1 3531016 R 931281 CDS YP_005930949.1 386012672 12521313 complement(3532284..3533588) 1 NC_017530.1 Major facilitator transporter 3533588 12521313 PPUBIRD1_3139 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005930949.1 3532284 R 931281 CDS YP_005930950.1 386012673 12521314 3533862..3534770 1 NC_017530.1 LysR family transcriptional regulator 3534770 12521314 PPUBIRD1_3140 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930950.1 3533862 D 931281 CDS YP_005930951.1 386012674 12521315 3534958..3535536 1 NC_017530.1 hypothetical protein 3535536 12521315 PPUBIRD1_3141 Pseudomonas putida BIRD-1 hypothetical protein YP_005930951.1 3534958 D 931281 CDS YP_005930952.1 386012675 12521316 complement(3535548..3536324) 1 NC_017530.1 Short chain dehydrogenase/reductase family oxidoreductase 3536324 12521316 PPUBIRD1_3142 Pseudomonas putida BIRD-1 Short chain dehydrogenase/reductase family oxidoreductase YP_005930952.1 3535548 R 931281 CDS YP_005930953.1 386012676 12521317 complement(3536492..3537418) 1 NC_017530.1 LysR family transcriptional regulator 3537418 12521317 PPUBIRD1_3143 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930953.1 3536492 R 931281 CDS YP_005930954.1 386012677 12521318 complement(3537545..3538267) 1 NC_017530.1 hypothetical protein 3538267 12521318 PPUBIRD1_3144 Pseudomonas putida BIRD-1 hypothetical protein YP_005930954.1 3537545 R 931281 CDS YP_005930955.1 386012678 12521319 complement(3538347..3538649) 1 NC_017530.1 hypothetical protein 3538649 12521319 PPUBIRD1_3145 Pseudomonas putida BIRD-1 hypothetical protein YP_005930955.1 3538347 R 931281 CDS YP_005930956.1 386012679 12521320 3538849..3539472 1 NC_017530.1 glutathione S-transferase 3539472 12521320 PPUBIRD1_3146 Pseudomonas putida BIRD-1 glutathione S-transferase YP_005930956.1 3538849 D 931281 CDS YP_005930957.1 386012680 12521321 complement(3539526..3540701) 1 NC_017530.1 Major facilitator superfamily MFS_1 3540701 12521321 PPUBIRD1_3147 Pseudomonas putida BIRD-1 Major facilitator superfamily MFS_1 YP_005930957.1 3539526 R 931281 CDS YP_005930958.1 386012681 12521322 3540796..3541695 1 NC_017530.1 LysR family transcriptional regulator 3541695 12521322 PPUBIRD1_3148 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930958.1 3540796 D 931281 CDS YP_005930959.1 386012682 12521323 complement(3541748..3542368) 1 NC_017530.1 TetR family transcriptional regulator 3542368 12521323 PPUBIRD1_3149 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005930959.1 3541748 R 931281 CDS YP_005930960.1 386012683 12521324 3542498..3544180 1 NC_017530.1 amidohydrolase 3544180 12521324 PPUBIRD1_3150 Pseudomonas putida BIRD-1 amidohydrolase YP_005930960.1 3542498 D 931281 CDS YP_005930961.1 386012684 12521325 3544195..3545352 1 NC_017530.1 Major facilitator transporter 3545352 12521325 PPUBIRD1_3151 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005930961.1 3544195 D 931281 CDS YP_005930962.1 386012685 12521326 3545463..3546458 1 NC_017530.1 D-isomer specific 2-hydroxyacid dehydrogenase family protein 3546458 12521326 PPUBIRD1_3152 Pseudomonas putida BIRD-1 D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_005930962.1 3545463 D 931281 CDS YP_005930963.1 386012686 12521327 complement(3546466..3546951) 1 NC_017530.1 hypothetical protein 3546951 12521327 PPUBIRD1_3153 Pseudomonas putida BIRD-1 hypothetical protein YP_005930963.1 3546466 R 931281 CDS YP_005930964.1 386012687 12521328 3547094..3548089 1 NC_017530.1 5'-nucleotidase 3548089 12521328 PPUBIRD1_3154 Pseudomonas putida BIRD-1 5'-nucleotidase YP_005930964.1 3547094 D 931281 CDS YP_005930965.1 386012688 12521329 3548172..3549449 1 NC_017530.1 O-acetylhomoserine aminocarboxypropyltransferase 3549449 12521329 PPUBIRD1_3155 Pseudomonas putida BIRD-1 O-acetylhomoserine aminocarboxypropyltransferase YP_005930965.1 3548172 D 931281 CDS YP_005930966.1 386012689 12521330 3549514..3550278 1 NC_017530.1 hypothetical protein 3550278 12521330 PPUBIRD1_3156 Pseudomonas putida BIRD-1 hypothetical protein YP_005930966.1 3549514 D 931281 CDS YP_005930967.1 386012690 12521331 complement(3550361..3550834) 1 NC_017530.1 hypothetical protein 3550834 12521331 PPUBIRD1_3157 Pseudomonas putida BIRD-1 hypothetical protein YP_005930967.1 3550361 R 931281 CDS YP_005930968.1 386012691 12521332 3550980..3552143 1 NC_017530.1 ATPase-like protein 3552143 12521332 PPUBIRD1_3159 Pseudomonas putida BIRD-1 ATPase-like protein YP_005930968.1 3550980 D 931281 CDS YP_005930969.1 386012692 12521333 complement(3552173..3552829) 1 NC_017530.1 Metal dependent phosphohydrolase 3552829 12521333 PPUBIRD1_3160 Pseudomonas putida BIRD-1 Metal dependent phosphohydrolase YP_005930969.1 3552173 R 931281 CDS YP_005930970.1 386012693 12521334 3553083..3555494 1 NC_017530.1 TonB-dependent siderophore receptor 3555494 12521334 PPUBIRD1_3161 Pseudomonas putida BIRD-1 TonB-dependent siderophore receptor YP_005930970.1 3553083 D 931281 CDS YP_005930971.1 386012694 12521335 complement(3555534..3556442) 1 NC_017530.1 Glutaminase 3556442 12521335 PPUBIRD1_3162 Pseudomonas putida BIRD-1 Glutaminase YP_005930971.1 3555534 R 931281 CDS YP_005930972.1 386012695 12521336 complement(3556521..3556637) 1 NC_017530.1 hypothetical protein 3556637 12521336 PPUBIRD1_3163 Pseudomonas putida BIRD-1 hypothetical protein YP_005930972.1 3556521 R 931281 CDS YP_005930973.1 386012696 12521337 3556834..3558183 1 NC_017530.1 Major facilitator transporter 3558183 12521337 PPUBIRD1_3164 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005930973.1 3556834 D 931281 CDS YP_005930974.1 386012697 12521338 3558205..3559467 1 NC_017530.1 protocatechuate 4,5-dioxygenase 3559467 12521338 PPUBIRD1_3165 Pseudomonas putida BIRD-1 protocatechuate 4,5-dioxygenase YP_005930974.1 3558205 D 931281 CDS YP_005930975.1 386012698 12521339 3559599..3560846 1 NC_017530.1 Outer membrane porin 3560846 12521339 PPUBIRD1_3167 Pseudomonas putida BIRD-1 Outer membrane porin YP_005930975.1 3559599 D 931281 CDS YP_005930976.1 386012699 12521340 complement(3560862..3562055) 1 NC_017530.1 LysR family transcriptional regulator 3562055 12521340 PPUBIRD1_3168 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930976.1 3560862 R 931281 CDS YP_005930977.1 386012700 12521341 3562216..3562950 1 NC_017530.1 LmbE family protein 3562950 12521341 PPUBIRD1_3169 Pseudomonas putida BIRD-1 LmbE family protein YP_005930977.1 3562216 D 931281 CDS YP_005930978.1 386012701 12521342 3562947..3563663 1 NC_017530.1 hypothetical protein 3563663 12521342 PPUBIRD1_3170 Pseudomonas putida BIRD-1 hypothetical protein YP_005930978.1 3562947 D 931281 CDS YP_005930979.1 386012702 12521343 3563666..3564751 1 NC_017530.1 hypothetical protein 3564751 12521343 PPUBIRD1_3171 Pseudomonas putida BIRD-1 hypothetical protein YP_005930979.1 3563666 D 931281 CDS YP_005930980.1 386012703 12521344 complement(3564775..3565233) 1 NC_017530.1 hypothetical protein 3565233 12521344 PPUBIRD1_3172 Pseudomonas putida BIRD-1 hypothetical protein YP_005930980.1 3564775 R 931281 CDS YP_005930981.1 386012704 12521345 complement(3565269..3565829) 1 NC_017530.1 GTP cyclohydrolase 1 2 3565829 12521345 PPUBIRD1_3173 Pseudomonas putida BIRD-1 GTP cyclohydrolase 1 2 YP_005930981.1 3565269 R 931281 CDS YP_005930982.1 386012705 12521346 complement(3566363..3567079) 1 NC_017530.1 hypothetical protein 3567079 12521346 PPUBIRD1_3174 Pseudomonas putida BIRD-1 hypothetical protein YP_005930982.1 3566363 R 931281 CDS YP_005930983.1 386012706 12521347 3567256..3567474 1 NC_017530.1 hypothetical protein 3567474 12521347 PPUBIRD1_3175 Pseudomonas putida BIRD-1 hypothetical protein YP_005930983.1 3567256 D 931281 CDS YP_005930984.1 386012707 12521348 3568342..3568605 1 NC_017530.1 hypothetical protein 3568605 12521348 PPUBIRD1_3176 Pseudomonas putida BIRD-1 hypothetical protein YP_005930984.1 3568342 D 931281 CDS YP_005930985.1 386012708 12521349 complement(3569929..3570597) 1 NC_017530.1 Short chain dehydrogenase/reductase family oxidoreductase 3570597 12521349 PPUBIRD1_3177 Pseudomonas putida BIRD-1 Short chain dehydrogenase/reductase family oxidoreductase YP_005930985.1 3569929 R 931281 CDS YP_005930986.1 386012709 12521350 complement(3570643..3571128) 1 NC_017530.1 hypothetical protein 3571128 12521350 PPUBIRD1_3178 Pseudomonas putida BIRD-1 hypothetical protein YP_005930986.1 3570643 R 931281 CDS YP_005930987.1 386012710 12521351 3571553..3572533 1 NC_017530.1 GAF domain/GGDEF domain-containing protein 3572533 12521351 PPUBIRD1_3179 Pseudomonas putida BIRD-1 GAF domain/GGDEF domain-containing protein YP_005930987.1 3571553 D 931281 CDS YP_005930988.1 386012711 12521352 complement(3572691..3572900) 1 NC_017530.1 4-oxalocrotonate tautomerase; DmpI 3572900 dmpI 12521352 dmpI Pseudomonas putida BIRD-1 DmpI YP_005930988.1 3572691 R 931281 CDS YP_005930989.1 386012712 12521353 complement(3572970..3573701) 1 NC_017530.1 3-oxoacyl-ACP reductase 3573701 12521353 PPUBIRD1_3181 Pseudomonas putida BIRD-1 3-oxoacyl-ACP reductase YP_005930989.1 3572970 R 931281 CDS YP_005930990.1 386012713 12521354 3573815..3574741 1 NC_017530.1 LysR family transcriptional regulator 3574741 12521354 PPUBIRD1_3182 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005930990.1 3573815 D 931281 CDS YP_005930991.1 386012714 12521355 3575446..3575601 1 NC_017530.1 Glycosyltransferase 36 3575601 12521355 PPUBIRD1_3183 Pseudomonas putida BIRD-1 Glycosyltransferase 36 YP_005930991.1 3575446 D 931281 CDS YP_005930992.1 386012715 12521356 3575591..3575983 1 NC_017530.1 Glycosyltransferase 36 3575983 12521356 PPUBIRD1_3184 Pseudomonas putida BIRD-1 Glycosyltransferase 36 YP_005930992.1 3575591 D 931281 CDS YP_005930993.1 386012716 12521357 3576030..3576230 1 NC_017530.1 Crp/FNR family transcriptional regulator 3576230 12521357 PPUBIRD1_3185 Pseudomonas putida BIRD-1 Crp/FNR family transcriptional regulator YP_005930993.1 3576030 D 931281 CDS YP_005930994.1 386012717 12521358 complement(3576282..3576467) 1 NC_017530.1 hypothetical protein 3576467 12521358 PPUBIRD1_3186 Pseudomonas putida BIRD-1 hypothetical protein YP_005930994.1 3576282 R 931281 CDS YP_005930995.1 386012718 12521359 complement(3577495..3578268) 1 NC_017530.1 hypothetical protein 3578268 12521359 PPUBIRD1_3188 Pseudomonas putida BIRD-1 hypothetical protein YP_005930995.1 3577495 R 931281 CDS YP_005930996.1 386012719 12521360 3578358..3579797 1 NC_017530.1 Putative metal dependent phosphohydrolase 3579797 12521360 PPUBIRD1_3189 Pseudomonas putida BIRD-1 Putative metal dependent phosphohydrolase YP_005930996.1 3578358 D 931281 CDS YP_005930997.1 386012720 12521361 complement(3579829..3580743) 1 NC_017530.1 hypothetical protein 3580743 12521361 PPUBIRD1_3190 Pseudomonas putida BIRD-1 hypothetical protein YP_005930997.1 3579829 R 931281 CDS YP_005930998.1 386012721 12521362 3580860..3581189 1 NC_017530.1 hypothetical protein 3581189 12521362 PPUBIRD1_3191 Pseudomonas putida BIRD-1 hypothetical protein YP_005930998.1 3580860 D 931281 CDS YP_005930999.1 386012722 12521363 3581186..3581959 1 NC_017530.1 short-chain dehydrogenase 3581959 12521363 PPUBIRD1_3192 Pseudomonas putida BIRD-1 short-chain dehydrogenase YP_005930999.1 3581186 D 931281 CDS YP_005931000.1 386012723 12521364 3582470..3582703 1 NC_017530.1 hypothetical protein 3582703 12521364 PPUBIRD1_3193 Pseudomonas putida BIRD-1 hypothetical protein YP_005931000.1 3582470 D 931281 CDS YP_005931001.1 386012724 12521365 complement(3583256..3584380) 1 NC_017530.1 P-loop protein 3584380 12521365 PPUBIRD1_3194 Pseudomonas putida BIRD-1 P-loop protein YP_005931001.1 3583256 R 931281 CDS YP_005931002.1 386012725 12521366 complement(3584349..3584552) 1 NC_017530.1 hypothetical protein 3584552 12521366 PPUBIRD1_3195 Pseudomonas putida BIRD-1 hypothetical protein YP_005931002.1 3584349 R 931281 CDS YP_005931003.1 386012726 12521367 complement(3586368..3586637) 1 NC_017530.1 hypothetical protein 3586637 12521367 PPUBIRD1_3197 Pseudomonas putida BIRD-1 hypothetical protein YP_005931003.1 3586368 R 931281 CDS YP_005931004.1 386012727 12521368 complement(3588048..3588521) 1 NC_017530.1 hypothetical protein 3588521 12521368 PPUBIRD1_3198 Pseudomonas putida BIRD-1 hypothetical protein YP_005931004.1 3588048 R 931281 CDS YP_005931005.1 386012728 12521369 3588534..3588725 1 NC_017530.1 phosphoadenosine phosphosulfate reductase 3588725 12521369 PPUBIRD1_3199 Pseudomonas putida BIRD-1 phosphoadenosine phosphosulfate reductase YP_005931005.1 3588534 D 931281 CDS YP_005931006.1 386012729 12521370 3590232..3590525 1 NC_017530.1 hypothetical protein 3590525 12521370 PPUBIRD1_3201 Pseudomonas putida BIRD-1 hypothetical protein YP_005931006.1 3590232 D 931281 CDS YP_005931007.1 386012730 12521371 3590545..3590853 1 NC_017530.1 hypothetical protein 3590853 12521371 PPUBIRD1_3202 Pseudomonas putida BIRD-1 hypothetical protein YP_005931007.1 3590545 D 931281 CDS YP_005931008.1 386012731 12521372 3591568..3591975 1 NC_017530.1 Integrase family protein 3591975 12521372 PPUBIRD1_3204 Pseudomonas putida BIRD-1 Integrase family protein YP_005931008.1 3591568 D 931281 CDS YP_005931009.1 386012732 12521373 3592067..3592747 1 NC_017530.1 Integrase family protein 3592747 12521373 PPUBIRD1_3205 Pseudomonas putida BIRD-1 Integrase family protein YP_005931009.1 3592067 D 931281 CDS YP_005931010.1 386012733 12521375 complement(3593020..3593376) 1 NC_017530.1 hypothetical protein 3593376 12521375 PPUBIRD1_3206 Pseudomonas putida BIRD-1 hypothetical protein YP_005931010.1 3593020 R 931281 CDS YP_005931011.1 386012734 12521376 complement(3593357..3593635) 1 NC_017530.1 Integration host factor subunit alpha; IhfA 3593635 ihfA 12521376 ihfA Pseudomonas putida BIRD-1 IhfA YP_005931011.1 3593357 R 931281 CDS YP_005931012.1 386012735 12521377 complement(3593664..3596045) 1 NC_017530.1 Phenylalanyl-tRNA synthetase beta chain; protein PheT 3596045 pheT 12521377 pheT Pseudomonas putida BIRD-1 protein PheT YP_005931012.1 3593664 R 931281 CDS YP_005931013.1 386012736 12521378 complement(3596077..3597093) 1 NC_017530.1 Phenylalanyl-tRNA synthetase alpha chain; PheS protein 3597093 pheS 12521378 pheS Pseudomonas putida BIRD-1 PheS protein YP_005931013.1 3596077 R 931281 CDS YP_005931014.1 386012737 12521379 complement(3597203..3597559) 1 NC_017530.1 50S ribosomal protein L20; protein RplT 3597559 rplT 12521379 rplT Pseudomonas putida BIRD-1 protein RplT YP_005931014.1 3597203 R 931281 CDS YP_005931015.1 386012738 12521380 complement(3597587..3597781) 1 NC_017530.1 50S ribosomal protein L35; protein RpmI 3597781 rpmI 12521380 rpmI Pseudomonas putida BIRD-1 protein RpmI YP_005931015.1 3597587 R 931281 CDS YP_005931016.1 386012739 12521381 complement(3597842..3598393) 1 NC_017530.1 Translation initiation factor IF-3; protein InfC 3598393 infC 12521381 infC Pseudomonas putida BIRD-1 protein InfC YP_005931016.1 3597842 R 931281 CDS YP_005931017.1 386012740 12521382 complement(3598393..3600315) 1 NC_017530.1 Threonyl-tRNA synthetase; protein ThrS 3600315 thrS 12521382 thrS Pseudomonas putida BIRD-1 protein ThrS YP_005931017.1 3598393 R 931281 CDS YP_005931018.1 386012741 12521383 3600756..3600959 1 NC_017530.1 hypothetical protein 3600959 12521383 PPUBIRD1_3214 Pseudomonas putida BIRD-1 hypothetical protein YP_005931018.1 3600756 D 931281 CDS YP_005931019.1 386012742 12521384 3601122..3601334 1 NC_017530.1 Cold shock protein capa, fragment-related protein 3601334 12521384 PPUBIRD1_3215 Pseudomonas putida BIRD-1 Cold shock protein capa, fragment-related protein YP_005931019.1 3601122 D 931281 CDS YP_005931020.1 386012743 12521385 complement(3601535..3601855) 1 NC_017530.1 hypothetical protein 3601855 12521385 PPUBIRD1_3216 Pseudomonas putida BIRD-1 hypothetical protein YP_005931020.1 3601535 R 931281 CDS YP_005931021.1 386012744 12521386 3602130..3602342 1 NC_017530.1 hypothetical protein 3602342 12521386 PPUBIRD1_3217 Pseudomonas putida BIRD-1 hypothetical protein YP_005931021.1 3602130 D 931281 CDS YP_005931022.1 386012745 12521387 complement(3602314..3603315) 1 NC_017530.1 inosine/uridine-preferring nucleoside hydrolase 3603315 12521387 PPUBIRD1_3218 Pseudomonas putida BIRD-1 inosine/uridine-preferring nucleoside hydrolase YP_005931022.1 3602314 R 931281 CDS YP_005931023.1 386012746 12521388 complement(3603380..3603778) 1 NC_017530.1 D-ribose pyranase 3603778 12521388 PPUBIRD1_3219 Pseudomonas putida BIRD-1 D-ribose pyranase YP_005931023.1 3603380 R 931281 CDS YP_005931024.1 386012747 12521389 complement(3603775..3604683) 1 NC_017530.1 Ribokinase 3604683 12521389 PPUBIRD1_3220 Pseudomonas putida BIRD-1 Ribokinase YP_005931024.1 3603775 R 931281 CDS YP_005931025.1 386012748 12521390 complement(3604699..3605721) 1 NC_017530.1 ribose operon repressor; protein RbsR 3605721 rbsR 12521390 rbsR Pseudomonas putida BIRD-1 protein RbsR YP_005931025.1 3604699 R 931281 CDS YP_005931026.1 386012749 12521391 complement(3605726..3606721) 1 NC_017530.1 monosaccharide-transporting ATPase 3606721 12521391 PPUBIRD1_3222 Pseudomonas putida BIRD-1 monosaccharide-transporting ATPase YP_005931026.1 3605726 R 931281 CDS YP_005931027.1 386012750 12521392 complement(3606718..3608271) 1 NC_017530.1 ABC transporter 3608271 12521392 PPUBIRD1_3223 Pseudomonas putida BIRD-1 ABC transporter YP_005931027.1 3606718 R 931281 CDS YP_005931028.1 386012751 12521393 complement(3608292..3609251) 1 NC_017530.1 monosaccharide-transporting ATPase; protein RbsB 3609251 rbsB 12521393 rbsB Pseudomonas putida BIRD-1 protein RbsB YP_005931028.1 3608292 R 931281 CDS YP_005931029.1 386012752 12521394 3609619..3610707 1 NC_017530.1 Glutaminase-asparaginase 3610707 12521394 PPUBIRD1_3225 Pseudomonas putida BIRD-1 Glutaminase-asparaginase YP_005931029.1 3609619 D 931281 CDS YP_005931030.1 386012753 12521395 complement(3610832..3612706) 1 NC_017530.1 Putative PAS/PAC sensor protein 3612706 12521395 PPUBIRD1_3226 Pseudomonas putida BIRD-1 Putative PAS/PAC sensor protein YP_005931030.1 3610832 R 931281 CDS YP_005931031.1 386012754 12521396 3612908..3613348 1 NC_017530.1 cyanate hydratase 3613348 12521396 PPUBIRD1_3227 Pseudomonas putida BIRD-1 cyanate hydratase YP_005931031.1 3612908 D 931281 CDS YP_005931032.1 386012755 12521397 3613413..3614237 1 NC_017530.1 Formate/nitrite transporter 3614237 12521397 PPUBIRD1_3228 Pseudomonas putida BIRD-1 Formate/nitrite transporter YP_005931032.1 3613413 D 931281 CDS YP_005931033.1 386012756 12521398 3614457..3614699 1 NC_017530.1 hypothetical protein 3614699 12521398 PPUBIRD1_3229 Pseudomonas putida BIRD-1 hypothetical protein YP_005931033.1 3614457 D 931281 CDS YP_005931034.1 386012757 12521399 3614706..3615398 1 NC_017530.1 Deoxyribonuclease I 3615398 12521399 PPUBIRD1_3230 Pseudomonas putida BIRD-1 Deoxyribonuclease I YP_005931034.1 3614706 D 931281 CDS YP_005931035.1 386012758 12521400 complement(3615402..3615827) 1 NC_017530.1 hypothetical protein 3615827 12521400 PPUBIRD1_3231 Pseudomonas putida BIRD-1 hypothetical protein YP_005931035.1 3615402 R 931281 CDS YP_005931036.1 386012759 12521401 complement(3615926..3616495) 1 NC_017530.1 sporulation domain-containing protein 3616495 12521401 PPUBIRD1_3232 Pseudomonas putida BIRD-1 sporulation domain-containing protein YP_005931036.1 3615926 R 931281 CDS YP_005931037.1 386012760 12521404 3617156..3618439 1 NC_017530.1 FAD dependent oxidoreductase 3618439 12521404 PPUBIRD1_3233 Pseudomonas putida BIRD-1 FAD dependent oxidoreductase YP_005931037.1 3617156 D 931281 CDS YP_005931038.1 386012761 12521405 complement(3618551..3619285) 1 NC_017530.1 hypothetical protein 3619285 12521405 PPUBIRD1_3234 Pseudomonas putida BIRD-1 hypothetical protein YP_005931038.1 3618551 R 931281 CDS YP_005931039.1 386012762 12521406 3619452..3619625 1 NC_017530.1 hypothetical protein 3619625 12521406 PPUBIRD1_3235 Pseudomonas putida BIRD-1 hypothetical protein YP_005931039.1 3619452 D 931281 CDS YP_005931040.1 386012763 12521407 complement(3619752..3620504) 1 NC_017530.1 integral membrane protein TerC 3620504 12521407 PPUBIRD1_3236 Pseudomonas putida BIRD-1 integral membrane protein TerC YP_005931040.1 3619752 R 931281 CDS YP_005931041.1 386012764 12521408 complement(3620533..3620772) 1 NC_017530.1 hypothetical protein 3620772 12521408 PPUBIRD1_3237 Pseudomonas putida BIRD-1 hypothetical protein YP_005931041.1 3620533 R 931281 CDS YP_005931042.1 386012765 12521409 3620905..3621798 1 NC_017530.1 LysR family transcriptional regulator 3621798 12521409 PPUBIRD1_3238 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931042.1 3620905 D 931281 CDS YP_005931043.1 386012766 12521410 3621896..3623107 1 NC_017530.1 Serine/threonine transporter sstT 3623107 12521410 PPUBIRD1_3239 Pseudomonas putida BIRD-1 Serine/threonine transporter sstT YP_005931043.1 3621896 D 931281 CDS YP_005931044.1 386012767 12521411 3623196..3623843 1 NC_017530.1 hypothetical protein 3623843 12521411 PPUBIRD1_3240 Pseudomonas putida BIRD-1 hypothetical protein YP_005931044.1 3623196 D 931281 CDS YP_005931045.1 386012768 12521412 complement(3623848..3624036) 1 NC_017530.1 hypothetical protein 3624036 12521412 PPUBIRD1_3241 Pseudomonas putida BIRD-1 hypothetical protein YP_005931045.1 3623848 R 931281 CDS YP_005931046.1 386012769 12521413 complement(3624235..3625797) 1 NC_017530.1 Alkyl hydroperoxide reductase subunit F; AhpF protein 3625797 ahpF 12521413 ahpF Pseudomonas putida BIRD-1 AhpF protein YP_005931046.1 3624235 R 931281 CDS YP_005931047.1 386012770 12521414 complement(3625922..3626485) 1 NC_017530.1 alkyl hydroperoxide reductase, C subunit; alkyl hydroperoxide reductase AhpC 3626485 ahpC 12521414 ahpC Pseudomonas putida BIRD-1 alkyl hydroperoxide reductase AhpC YP_005931047.1 3625922 R 931281 CDS YP_005931048.1 386012771 12521415 3626807..3627871 1 NC_017530.1 integral membrane protein TerC 3627871 12521415 PPUBIRD1_3244 Pseudomonas putida BIRD-1 integral membrane protein TerC YP_005931048.1 3626807 D 931281 CDS YP_005931049.1 386012772 12521416 complement(3627967..3629196) 1 NC_017530.1 Acyl-CoA dehydrogenase domain-containing protein 3629196 12521416 PPUBIRD1_3245 Pseudomonas putida BIRD-1 Acyl-CoA dehydrogenase domain-containing protein YP_005931049.1 3627967 R 931281 CDS YP_005931050.1 386012773 12521417 3629337..3630263 1 NC_017530.1 LysR family transcriptional regulator 3630263 12521417 PPUBIRD1_3246 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931050.1 3629337 D 931281 CDS YP_005931051.1 386012774 12521418 3630415..3631611 1 NC_017530.1 aminotransferase, class V 3631611 12521418 PPUBIRD1_3247 Pseudomonas putida BIRD-1 aminotransferase, class V YP_005931051.1 3630415 D 931281 CDS YP_005931052.1 386012775 12521419 complement(3631917..3632282) 1 NC_017530.1 RES domain-containing protein 3632282 12521419 PPUBIRD1_3248 Pseudomonas putida BIRD-1 RES domain-containing protein YP_005931052.1 3631917 R 931281 CDS YP_005931053.1 386012776 12521420 complement(3632369..3632818) 1 NC_017530.1 hypothetical protein 3632818 12521420 PPUBIRD1_3249 Pseudomonas putida BIRD-1 hypothetical protein YP_005931053.1 3632369 R 931281 CDS YP_005931054.1 386012777 12521421 complement(3632960..3633613) 1 NC_017530.1 dihydropteridine reductase; PnrB 3633613 pnrB 12521421 pnrB Pseudomonas putida BIRD-1 PnrB YP_005931054.1 3632960 R 931281 CDS YP_005931055.1 386012778 12521422 3633717..3634640 1 NC_017530.1 LysR family transcriptional regulator 3634640 12521422 PPUBIRD1_3251 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931055.1 3633717 D 931281 CDS YP_005931056.1 386012779 12521423 3634689..3635519 1 NC_017530.1 AraC family transcriptional regulator 3635519 12521423 PPUBIRD1_3252 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005931056.1 3634689 D 931281 CDS YP_005931057.1 386012780 12521424 3635570..3636154 1 NC_017530.1 Lysine exporter protein LysE/YggA 3636154 12521424 PPUBIRD1_3253 Pseudomonas putida BIRD-1 Lysine exporter protein LysE/YggA YP_005931057.1 3635570 D 931281 CDS YP_005931058.1 386012781 12521425 complement(3636194..3637393) 1 NC_017530.1 Sugar efflux transporter 3637393 12521425 PPUBIRD1_3254 Pseudomonas putida BIRD-1 Sugar efflux transporter YP_005931058.1 3636194 R 931281 CDS YP_005931059.1 386012782 12521426 3637599..3638915 1 NC_017530.1 hypothetical protein 3638915 12521426 PPUBIRD1_3255 Pseudomonas putida BIRD-1 hypothetical protein YP_005931059.1 3637599 D 931281 CDS YP_005931060.1 386012783 12521427 complement(3639030..3640082) 1 NC_017530.1 Alcohol dehydrogenase 3640082 12521427 PPUBIRD1_3256 Pseudomonas putida BIRD-1 Alcohol dehydrogenase YP_005931060.1 3639030 R 931281 CDS YP_005931061.1 386012784 12521428 3640264..3641169 1 NC_017530.1 AraC family transcriptional regulator 3641169 12521428 PPUBIRD1_3257 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005931061.1 3640264 D 931281 CDS YP_005931062.1 386012785 12521429 complement(3641212..3641811) 1 NC_017530.1 TetR family transcriptional regulator 3641811 12521429 PPUBIRD1_3258 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005931062.1 3641212 R 931281 CDS YP_005931063.1 386012786 12521430 3641903..3642499 1 NC_017530.1 NAD(P)H dehydrogenase (quinone) 3642499 12521430 PPUBIRD1_3259 Pseudomonas putida BIRD-1 NAD(P)H dehydrogenase (quinone) YP_005931063.1 3641903 D 931281 CDS YP_005931064.1 386012787 12521431 3642621..3643127 1 NC_017530.1 ECF subfamily RNA polymerase sigma-24 factor 3643127 12521431 PPUBIRD1_3260 Pseudomonas putida BIRD-1 ECF subfamily RNA polymerase sigma-24 factor YP_005931064.1 3642621 D 931281 CDS YP_005931065.1 386012788 12521432 3643139..3644098 1 NC_017530.1 Anti-FecI sigma factor, FecR 3644098 12521432 PPUBIRD1_3261 Pseudomonas putida BIRD-1 Anti-FecI sigma factor, FecR YP_005931065.1 3643139 D 931281 CDS YP_005931066.1 386012789 12521433 3644192..3646624 1 NC_017530.1 TonB-dependent siderophore receptor 3646624 12521433 PPUBIRD1_3262 Pseudomonas putida BIRD-1 TonB-dependent siderophore receptor YP_005931066.1 3644192 D 931281 CDS YP_005931067.1 386012790 12521434 complement(3646632..3647177) 1 NC_017530.1 2'-5' RNA ligase 3647177 12521434 PPUBIRD1_3263 Pseudomonas putida BIRD-1 2'-5' RNA ligase YP_005931067.1 3646632 R 931281 CDS YP_005931068.1 386012791 12521435 3647336..3648235 1 NC_017530.1 Aspartyl/asparaginyl beta-hydroxylase 3648235 12521435 PPUBIRD1_3264 Pseudomonas putida BIRD-1 Aspartyl/asparaginyl beta-hydroxylase YP_005931068.1 3647336 D 931281 CDS YP_005931069.1 386012792 12521436 3648354..3648698 1 NC_017530.1 Alkylhydroperoxidase 3648698 12521436 PPUBIRD1_3265 Pseudomonas putida BIRD-1 Alkylhydroperoxidase YP_005931069.1 3648354 D 931281 CDS YP_005931070.1 386012793 12521437 3648777..3649346 1 NC_017530.1 N-acetyltransferase GCN5 3649346 12521437 PPUBIRD1_3266 Pseudomonas putida BIRD-1 N-acetyltransferase GCN5 YP_005931070.1 3648777 D 931281 CDS YP_005931071.1 386012794 12521438 3649741..3651945 1 NC_017530.1 TonB-dependent siderophore receptor 3651945 12521438 PPUBIRD1_3267 Pseudomonas putida BIRD-1 TonB-dependent siderophore receptor YP_005931071.1 3649741 D 931281 CDS YP_005931072.1 386012795 12521439 3652063..3653229 1 NC_017530.1 hypothetical protein 3653229 12521439 PPUBIRD1_3268 Pseudomonas putida BIRD-1 hypothetical protein YP_005931072.1 3652063 D 931281 CDS YP_005931073.1 386012796 12521440 3653567..3654577 1 NC_017530.1 Periplasmic binding protein 3654577 12521440 PPUBIRD1_3269 Pseudomonas putida BIRD-1 Periplasmic binding protein YP_005931073.1 3653567 D 931281 CDS YP_005931074.1 386012797 12521441 3654577..3655593 1 NC_017530.1 Transport system permease protein 3655593 12521441 PPUBIRD1_3270 Pseudomonas putida BIRD-1 Transport system permease protein YP_005931074.1 3654577 D 931281 CDS YP_005931075.1 386012798 12521442 3655599..3656378 1 NC_017530.1 Iron ABC transporter, ATP-binding protein, putative 3656378 12521442 PPUBIRD1_3271 Pseudomonas putida BIRD-1 Iron ABC transporter, ATP-binding protein, putative YP_005931075.1 3655599 D 931281 CDS YP_005931076.1 386012799 12521443 complement(3656434..3656931) 1 NC_017530.1 Acetyltransferase 3656931 12521443 PPUBIRD1_3272 Pseudomonas putida BIRD-1 Acetyltransferase YP_005931076.1 3656434 R 931281 CDS YP_005931077.1 386012800 12521444 3657083..3657544 1 NC_017530.1 hypothetical protein 3657544 12521444 PPUBIRD1_3273 Pseudomonas putida BIRD-1 hypothetical protein YP_005931077.1 3657083 D 931281 CDS YP_005931078.1 386012801 12521445 3657541..3659175 1 NC_017530.1 Diguanylate cyclase 3659175 12521445 PPUBIRD1_3274 Pseudomonas putida BIRD-1 Diguanylate cyclase YP_005931078.1 3657541 D 931281 CDS YP_005931079.1 386012802 12521446 3659335..3660111 1 NC_017530.1 Cobyrinic acid a,c-diamide synthase 3660111 12521446 PPUBIRD1_3275 Pseudomonas putida BIRD-1 Cobyrinic acid a,c-diamide synthase YP_005931079.1 3659335 D 931281 CDS YP_005931080.1 386012803 12521447 3660292..3661629 1 NC_017530.1 Major facilitator transporter 3661629 12521447 PPUBIRD1_3276 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005931080.1 3660292 D 931281 CDS YP_005931081.1 386012804 12521448 3661816..3662265 1 NC_017530.1 3-dehydroquinate dehydratase 3662265 12521448 PPUBIRD1_3277 Pseudomonas putida BIRD-1 3-dehydroquinate dehydratase YP_005931081.1 3661816 D 931281 CDS YP_005931082.1 386012805 12521449 3662262..3663110 1 NC_017530.1 shikimate 5-dehydrogenase; AroE_3 3663110 aroE_3 12521449 aroE_3 Pseudomonas putida BIRD-1 AroE_3 YP_005931082.1 3662262 D 931281 CDS YP_005931083.1 386012806 12521450 complement(3663224..3663739) 1 NC_017530.1 Redoxin domain-containing protein 3663739 12521450 PPUBIRD1_3279 Pseudomonas putida BIRD-1 Redoxin domain-containing protein YP_005931083.1 3663224 R 931281 CDS YP_005931084.1 386012807 12521451 complement(3663750..3664025) 1 NC_017530.1 hypothetical protein 3664025 12521451 PPUBIRD1_3280 Pseudomonas putida BIRD-1 hypothetical protein YP_005931084.1 3663750 R 931281 CDS YP_005931085.1 386012808 12521452 3664246..3664986 1 NC_017530.1 winged helix family two component transcriptional regulator; OmpR_2 3664986 ompR_2 12521452 ompR_2 Pseudomonas putida BIRD-1 OmpR_2 YP_005931085.1 3664246 D 931281 CDS YP_005931086.1 386012809 12521453 3664983..3666269 1 NC_017530.1 Integral membrane sensor signal transduction histidine kinase 3666269 12521453 PPUBIRD1_3282 Pseudomonas putida BIRD-1 Integral membrane sensor signal transduction histidine kinase YP_005931086.1 3664983 D 931281 CDS YP_005931087.1 386012810 12521454 3666433..3667050 1 NC_017530.1 hypothetical protein 3667050 12521454 PPUBIRD1_3283 Pseudomonas putida BIRD-1 hypothetical protein YP_005931087.1 3666433 D 931281 CDS YP_005931088.1 386012811 12521455 3667065..3667553 1 NC_017530.1 DoxX family protein 3667553 12521455 PPUBIRD1_3284 Pseudomonas putida BIRD-1 DoxX family protein YP_005931088.1 3667065 D 931281 CDS YP_005931089.1 386012812 12521456 complement(3667587..3668282) 1 NC_017530.1 hypothetical protein 3668282 12521456 PPUBIRD1_3285 Pseudomonas putida BIRD-1 hypothetical protein YP_005931089.1 3667587 R 931281 CDS YP_005931090.1 386012813 12521457 complement(3668275..3669108) 1 NC_017530.1 hypothetical protein 3669108 12521457 PPUBIRD1_3286 Pseudomonas putida BIRD-1 hypothetical protein YP_005931090.1 3668275 R 931281 CDS YP_005931091.1 386012814 12521458 complement(3669183..3669806) 1 NC_017530.1 hypothetical protein 3669806 12521458 PPUBIRD1_3287 Pseudomonas putida BIRD-1 hypothetical protein YP_005931091.1 3669183 R 931281 CDS YP_005931092.1 386012815 12521459 complement(3669849..3670400) 1 NC_017530.1 hypothetical protein 3670400 12521459 PPUBIRD1_3288 Pseudomonas putida BIRD-1 hypothetical protein YP_005931092.1 3669849 R 931281 CDS YP_005931093.1 386012816 12521460 complement(3670628..3675121) 1 NC_017530.1 Leucine-rich repeat-containing protein 3675121 12521460 PPUBIRD1_3289 Pseudomonas putida BIRD-1 Leucine-rich repeat-containing protein YP_005931093.1 3670628 R 931281 CDS YP_005931094.1 386012817 12521461 complement(3675219..3679640) 1 NC_017530.1 Leucine-rich repeat-containing protein 3679640 12521461 PPUBIRD1_3290 Pseudomonas putida BIRD-1 Leucine-rich repeat-containing protein YP_005931094.1 3675219 R 931281 CDS YP_005931095.1 386012818 12521462 complement(3679719..3682079) 1 NC_017530.1 DNA polymerase II; PolB 3682079 polB 12521462 polB Pseudomonas putida BIRD-1 PolB YP_005931095.1 3679719 R 931281 CDS YP_005931096.1 386012819 12521463 complement(3682146..3683336) 1 NC_017530.1 Major facilitator transporter 3683336 12521463 PPUBIRD1_3292 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005931096.1 3682146 R 931281 CDS YP_005931097.1 386012820 12521464 3683454..3684350 1 NC_017530.1 LysR family transcriptional regulator 3684350 12521464 PPUBIRD1_3293 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931097.1 3683454 D 931281 CDS YP_005931098.1 386012821 12521465 complement(3684331..3685251) 1 NC_017530.1 LysR family transcriptional regulator 3685251 12521465 PPUBIRD1_3294 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931098.1 3684331 R 931281 CDS YP_005931099.1 386012822 12521466 3685412..3686200 1 NC_017530.1 hypothetical protein 3686200 12521466 PPUBIRD1_3295 Pseudomonas putida BIRD-1 hypothetical protein YP_005931099.1 3685412 D 931281 CDS YP_005931100.1 386012823 12521467 3686203..3686829 1 NC_017530.1 Lysine exporter protein LysE/YggA 3686829 12521467 PPUBIRD1_3296 Pseudomonas putida BIRD-1 Lysine exporter protein LysE/YggA YP_005931100.1 3686203 D 931281 CDS YP_005931101.1 386012824 12521468 3686869..3687951 1 NC_017530.1 hypothetical protein 3687951 12521468 PPUBIRD1_3297 Pseudomonas putida BIRD-1 hypothetical protein YP_005931101.1 3686869 D 931281 CDS YP_005931102.1 386012825 12521469 3688090..3688785 1 NC_017530.1 hypothetical protein 3688785 12521469 PPUBIRD1_3298 Pseudomonas putida BIRD-1 hypothetical protein YP_005931102.1 3688090 D 931281 CDS YP_005931103.1 386012826 12521470 3688933..3689625 1 NC_017530.1 AzlC family protein; AzlC 3689625 azlC 12521470 azlC Pseudomonas putida BIRD-1 AzlC YP_005931103.1 3688933 D 931281 CDS YP_005931104.1 386012827 12521471 3689622..3689936 1 NC_017530.1 Branched-chain amino acid transport 3689936 12521471 PPUBIRD1_3300 Pseudomonas putida BIRD-1 Branched-chain amino acid transport YP_005931104.1 3689622 D 931281 CDS YP_005931105.1 386012828 12521472 3689933..3690778 1 NC_017530.1 AraC family transcriptional regulator 3690778 12521472 PPUBIRD1_3301 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005931105.1 3689933 D 931281 CDS YP_005931106.1 386012829 12521473 complement(3690826..3691182) 1 NC_017530.1 Major facilitator transporter 3691182 12521473 PPUBIRD1_3302 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005931106.1 3690826 R 931281 CDS YP_005931107.1 386012830 12521474 complement(3691478..3691909) 1 NC_017530.1 Transporter 3691909 12521474 PPUBIRD1_3303 Pseudomonas putida BIRD-1 Transporter YP_005931107.1 3691478 R 931281 CDS YP_005931108.1 386012831 12521475 3692496..3692723 1 NC_017530.1 hypothetical protein 3692723 12521475 PPUBIRD1_3304 Pseudomonas putida BIRD-1 hypothetical protein YP_005931108.1 3692496 D 931281 CDS YP_005931109.1 386012832 12521476 complement(3692774..3693256) 1 NC_017530.1 hypothetical protein 3693256 12521476 PPUBIRD1_3305 Pseudomonas putida BIRD-1 hypothetical protein YP_005931109.1 3692774 R 931281 CDS YP_005931110.1 386012833 12521477 complement(3693257..3693865) 1 NC_017530.1 Electron transport protein SCO1/SenC 3693865 12521477 PPUBIRD1_3306 Pseudomonas putida BIRD-1 Electron transport protein SCO1/SenC YP_005931110.1 3693257 R 931281 CDS YP_005931111.1 386012834 12521478 complement(3694062..3694646) 1 NC_017530.1 Fe/S biogenesis protein nfuA; protein YhgI 3694646 yhgI 12521478 yhgI Pseudomonas putida BIRD-1 protein YhgI YP_005931111.1 3694062 R 931281 CDS YP_005931112.1 386012835 12521479 complement(3694705..3695739) 1 NC_017530.1 Acyltransferase 3 3695739 12521479 PPUBIRD1_3308 Pseudomonas putida BIRD-1 Acyltransferase 3 YP_005931112.1 3694705 R 931281 CDS YP_005931113.1 386012836 12521480 complement(3695933..3698263) 1 NC_017530.1 Fatty acid cistrans isomerase 3698263 12521480 PPUBIRD1_3309 Pseudomonas putida BIRD-1 Fatty acid cistrans isomerase YP_005931113.1 3695933 R 931281 CDS YP_005931114.1 386012837 12521481 3698416..3702123 1 NC_017530.1 Methionine synthase; MetH 3702123 metH 12521481 metH Pseudomonas putida BIRD-1 MetH YP_005931114.1 3698416 D 931281 CDS YP_005931115.1 386012838 12521482 3702293..3702508 1 NC_017530.1 hypothetical protein 3702508 12521482 PPUBIRD1_3311 Pseudomonas putida BIRD-1 hypothetical protein YP_005931115.1 3702293 D 931281 CDS YP_005931116.1 386012839 12521483 complement(3702953..3703066) 1 NC_017530.1 hypothetical protein 3703066 12521483 PPUBIRD1_3312 Pseudomonas putida BIRD-1 hypothetical protein YP_005931116.1 3702953 R 931281 CDS YP_005931117.1 386012840 12521484 complement(3703152..3704228) 1 NC_017530.1 Periplasmic binding protein/LacI transcriptional regulator 3704228 12521484 PPUBIRD1_3313 Pseudomonas putida BIRD-1 Periplasmic binding protein/LacI transcriptional regulator YP_005931117.1 3703152 R 931281 CDS YP_005931118.1 386012841 12521485 3704442..3706094 1 NC_017530.1 sulfite reductase 3706094 12521485 PPUBIRD1_3315 Pseudomonas putida BIRD-1 sulfite reductase YP_005931118.1 3704442 D 931281 CDS YP_005931119.1 386012842 12521486 3706078..3706572 1 NC_017530.1 hypothetical protein 3706572 12521486 PPUBIRD1_3316 Pseudomonas putida BIRD-1 hypothetical protein YP_005931119.1 3706078 D 931281 CDS YP_005931120.1 386012843 12521487 complement(3706619..3710806) 1 NC_017530.1 Leucine-rich repeat-containing protein 3710806 12521487 PPUBIRD1_3317 Pseudomonas putida BIRD-1 Leucine-rich repeat-containing protein YP_005931120.1 3706619 R 931281 CDS YP_005931121.1 386012844 12521488 3711011..3711814 1 NC_017530.1 2,5-diketo-D-gluconate reductase B; DkgB 3711814 dkgB 12521488 dkgB Pseudomonas putida BIRD-1 DkgB YP_005931121.1 3711011 D 931281 CDS YP_005931122.1 386012845 12521489 3711835..3713007 1 NC_017530.1 Major facilitator family transporter 3713007 12521489 PPUBIRD1_3319 Pseudomonas putida BIRD-1 Major facilitator family transporter YP_005931122.1 3711835 D 931281 CDS YP_005931123.1 386012846 12521490 3713227..3714459 1 NC_017530.1 Major facilitator transporter 3714459 12521490 PPUBIRD1_3321 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005931123.1 3713227 D 931281 CDS YP_005931124.1 386012847 12521491 3714496..3715269 1 NC_017530.1 AraC family transcriptional regulator 3715269 12521491 PPUBIRD1_3322 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005931124.1 3714496 D 931281 CDS YP_005931125.1 386012848 12521492 3715412..3716560 1 NC_017530.1 Peptidase M14, carboxypeptidase A 3716560 12521492 PPUBIRD1_3323 Pseudomonas putida BIRD-1 Peptidase M14, carboxypeptidase A YP_005931125.1 3715412 D 931281 CDS YP_005931126.1 386012849 12521493 complement(3716637..3717608) 1 NC_017530.1 spore coat U domain protein; protein CsuE 3717608 csuE 12521493 csuE Pseudomonas putida BIRD-1 protein CsuE YP_005931126.1 3716637 R 931281 CDS YP_005931127.1 386012850 12521494 complement(3717605..3719902) 1 NC_017530.1 fimbrial biogenesis outer membrane usher protein; protein CsuD 3719902 csuD 12521494 csuD Pseudomonas putida BIRD-1 protein CsuD YP_005931127.1 3717605 R 931281 CDS YP_005931128.1 386012851 12521495 complement(3720011..3720787) 1 NC_017530.1 type 1 pili usher pathway chaperone CsuC; protein CsuC 3720787 csuC 12521495 csuC Pseudomonas putida BIRD-1 protein CsuC YP_005931128.1 3720011 R 931281 CDS YP_005931129.1 386012852 12521496 complement(3720828..3721331) 1 NC_017530.1 Spore coat U domain-containing protein 3721331 12521496 PPUBIRD1_3327 Pseudomonas putida BIRD-1 Spore coat U domain-containing protein YP_005931129.1 3720828 R 931281 CDS YP_005931130.1 386012853 12521497 complement(3721335..3721868) 1 NC_017530.1 Spore coat U domain-containing protein 3721868 12521497 PPUBIRD1_3328 Pseudomonas putida BIRD-1 Spore coat U domain-containing protein YP_005931130.1 3721335 R 931281 CDS YP_005931131.1 386012854 12521498 complement(3721887..3722423) 1 NC_017530.1 Spore coat U domain-containing protein 3722423 12521498 PPUBIRD1_3329 Pseudomonas putida BIRD-1 Spore coat U domain-containing protein YP_005931131.1 3721887 R 931281 CDS YP_005931132.1 386012855 12521499 complement(3722454..3722969) 1 NC_017530.1 Spore coat U domain-containing protein 3722969 12521499 PPUBIRD1_3330 Pseudomonas putida BIRD-1 Spore coat U domain-containing protein YP_005931132.1 3722454 R 931281 CDS YP_005931133.1 386012856 12521500 3723249..3725495 1 NC_017530.1 Multi-sensor signal transduction histidine kinase 3725495 12521500 PPUBIRD1_3331 Pseudomonas putida BIRD-1 Multi-sensor signal transduction histidine kinase YP_005931133.1 3723249 D 931281 CDS YP_005931134.1 386012857 12521501 3725511..3725972 1 NC_017530.1 Response regulator receiver protein 3725972 12521501 PPUBIRD1_3332 Pseudomonas putida BIRD-1 Response regulator receiver protein YP_005931134.1 3725511 D 931281 CDS YP_005931135.1 386012858 12521502 3725986..3728373 1 NC_017530.1 Multi-sensor hybrid histidine kinase 3728373 12521502 PPUBIRD1_3333 Pseudomonas putida BIRD-1 Multi-sensor hybrid histidine kinase YP_005931135.1 3725986 D 931281 CDS YP_005931136.1 386012859 12521504 3728833..3729075 1 NC_017530.1 hypothetical protein 3729075 12521504 PPUBIRD1_3334 Pseudomonas putida BIRD-1 hypothetical protein YP_005931136.1 3728833 D 931281 CDS YP_005931137.1 386012860 12521505 3729208..3730278 1 NC_017530.1 AFG1 family ATPase 3730278 12521505 PPUBIRD1_3335 Pseudomonas putida BIRD-1 AFG1 family ATPase YP_005931137.1 3729208 D 931281 CDS YP_005931138.1 386012861 12521506 complement(3730509..3732464) 1 NC_017530.1 hypothetical protein 3732464 12521506 PPUBIRD1_3336 Pseudomonas putida BIRD-1 hypothetical protein YP_005931138.1 3730509 R 931281 CDS YP_005931139.1 386012862 12521507 3732579..3733445 1 NC_017530.1 LysR family transcriptional regulator 3733445 12521507 PPUBIRD1_3337 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931139.1 3732579 D 931281 CDS YP_005931140.1 386012863 12521508 complement(3733419..3734573) 1 NC_017530.1 hypothetical protein 3734573 12521508 PPUBIRD1_3338 Pseudomonas putida BIRD-1 hypothetical protein YP_005931140.1 3733419 R 931281 CDS YP_005931141.1 386012864 12521509 complement(3734893..3736212) 1 NC_017530.1 Integral membrane sensor signal transduction histidine kinase 3736212 12521509 PPUBIRD1_3339 Pseudomonas putida BIRD-1 Integral membrane sensor signal transduction histidine kinase YP_005931141.1 3734893 R 931281 CDS YP_005931142.1 386012865 12521510 complement(3736209..3736877) 1 NC_017530.1 Winged helix family two component transcriptional regulator 3736877 12521510 PPUBIRD1_3340 Pseudomonas putida BIRD-1 Winged helix family two component transcriptional regulator YP_005931142.1 3736209 R 931281 CDS YP_005931143.1 386012866 12521511 complement(3736878..3737192) 1 NC_017530.1 hypothetical protein 3737192 12521511 PPUBIRD1_3341 Pseudomonas putida BIRD-1 hypothetical protein YP_005931143.1 3736878 R 931281 CDS YP_005931144.1 386012867 12521512 complement(3737192..3737500) 1 NC_017530.1 Peptidase 3737500 12521512 PPUBIRD1_3342 Pseudomonas putida BIRD-1 Peptidase YP_005931144.1 3737192 R 931281 CDS YP_005931145.1 386012868 12521513 3737720..3738799 1 NC_017530.1 hypothetical protein 3738799 12521513 PPUBIRD1_3343 Pseudomonas putida BIRD-1 hypothetical protein YP_005931145.1 3737720 D 931281 CDS YP_005931146.1 386012869 12521514 3738853..3739209 1 NC_017530.1 6-pyruvoyl tetrahydrobiopterin synthase 3739209 12521514 PPUBIRD1_3344 Pseudomonas putida BIRD-1 6-pyruvoyl tetrahydrobiopterin synthase YP_005931146.1 3738853 D 931281 CDS YP_005931147.1 386012870 12521515 complement(3739220..3739738) 1 NC_017530.1 hypothetical protein 3739738 12521515 PPUBIRD1_3345 Pseudomonas putida BIRD-1 hypothetical protein YP_005931147.1 3739220 R 931281 CDS YP_005931148.1 386012871 12521516 3740108..3742717 1 NC_017530.1 Aconitate hydratase 2 3742717 12521516 PPUBIRD1_3347 Pseudomonas putida BIRD-1 Aconitate hydratase 2 YP_005931148.1 3740108 D 931281 CDS YP_005931149.1 386012872 12521517 complement(3742893..3744377) 1 NC_017530.1 2-methylcitrate dehydratase; PrpD 3744377 prpD 12521517 prpD Pseudomonas putida BIRD-1 PrpD YP_005931149.1 3742893 R 931281 CDS YP_005931150.1 386012873 12521518 complement(3744549..3745739) 1 NC_017530.1 Putative AcnD-accessory protein PrpF 3745739 12521518 PPUBIRD1_3349 Pseudomonas putida BIRD-1 Putative AcnD-accessory protein PrpF YP_005931150.1 3744549 R 931281 CDS YP_005931151.1 386012874 12521519 complement(3745891..3748482) 1 NC_017530.1 Aconitate hydratase 3748482 12521519 PPUBIRD1_3350 Pseudomonas putida BIRD-1 Aconitate hydratase YP_005931151.1 3745891 R 931281 CDS YP_005931152.1 386012875 12521520 complement(3748642..3749769) 1 NC_017530.1 Methylcitrate synthase 3749769 12521520 PPUBIRD1_3351 Pseudomonas putida BIRD-1 Methylcitrate synthase YP_005931152.1 3748642 R 931281 CDS YP_005931153.1 386012876 12521521 complement(3749830..3750720) 1 NC_017530.1 2-methylisocitrate lyase; PrpB 3750720 prpB 12521521 prpB Pseudomonas putida BIRD-1 PrpB YP_005931153.1 3749830 R 931281 CDS YP_005931154.1 386012877 12521522 complement(3750717..3751433) 1 NC_017530.1 GntR family transcriptional regulator 3751433 12521522 PPUBIRD1_3353 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005931154.1 3750717 R 931281 CDS YP_005931155.1 386012878 12521523 3751761..3752276 1 NC_017530.1 hypothetical protein 3752276 12521523 PPUBIRD1_3354 Pseudomonas putida BIRD-1 hypothetical protein YP_005931155.1 3751761 D 931281 CDS YP_005931156.1 386012879 12521524 3752282..3753817 1 NC_017530.1 hypothetical protein 3753817 12521524 PPUBIRD1_3355 Pseudomonas putida BIRD-1 hypothetical protein YP_005931156.1 3752282 D 931281 CDS YP_005931157.1 386012880 12521525 3753817..3754797 1 NC_017530.1 alpha-L-glutamate ligase 3754797 12521525 PPUBIRD1_3356 Pseudomonas putida BIRD-1 alpha-L-glutamate ligase YP_005931157.1 3753817 D 931281 CDS YP_005931158.1 386012881 12521526 3755006..3756346 1 NC_017530.1 Para-aminobenzoate synthase, subunit I 3756346 12521526 PPUBIRD1_3357 Pseudomonas putida BIRD-1 Para-aminobenzoate synthase, subunit I YP_005931158.1 3755006 D 931281 CDS YP_005931159.1 386012882 12521527 3756426..3757160 1 NC_017530.1 phosphoadenosine phosphosulfate reductase; CysH 3757160 cysH 12521527 cysH Pseudomonas putida BIRD-1 CysH YP_005931159.1 3756426 D 931281 CDS YP_005931160.1 386012883 12521528 complement(3757330..3758304) 1 NC_017530.1 transcriptional regulator CysB; CysB 3758304 cysB 12521528 cysB Pseudomonas putida BIRD-1 CysB YP_005931160.1 3757330 R 931281 CDS YP_005931161.1 386012884 12521529 complement(3758433..3758930) 1 NC_017530.1 Universal stress protein 3758930 12521529 PPUBIRD1_3360 Pseudomonas putida BIRD-1 Universal stress protein YP_005931161.1 3758433 R 931281 CDS YP_005931162.1 386012885 12521530 complement(3759055..3760104) 1 NC_017530.1 2-dehydropantoate 2-reductase 3760104 12521530 PPUBIRD1_3361 Pseudomonas putida BIRD-1 2-dehydropantoate 2-reductase YP_005931162.1 3759055 R 931281 CDS YP_005931163.1 386012886 12521531 3760235..3761311 1 NC_017530.1 phospho-2-dehydro-3-deoxyheptonate aldolase; AroF 3761311 aroF 12521531 aroF Pseudomonas putida BIRD-1 AroF YP_005931163.1 3760235 D 931281 CDS YP_005931164.1 386012887 12521532 complement(3761381..3761662) 1 NC_017530.1 hypothetical protein 3761662 12521532 PPUBIRD1_3363 Pseudomonas putida BIRD-1 hypothetical protein YP_005931164.1 3761381 R 931281 CDS YP_005931165.1 386012888 12521533 complement(3762556..3763533) 1 NC_017530.1 ErfK/YbiS/YcfS/YnhG family protein 3763533 12521533 PPUBIRD1_3365 Pseudomonas putida BIRD-1 ErfK/YbiS/YcfS/YnhG family protein YP_005931165.1 3762556 R 931281 CDS YP_005931166.1 386012889 12521534 complement(3763647..3763937) 1 NC_017530.1 hypothetical protein 3763937 12521534 PPUBIRD1_3366 Pseudomonas putida BIRD-1 hypothetical protein YP_005931166.1 3763647 R 931281 CDS YP_005931167.1 386012890 12521535 complement(3763996..3764601) 1 NC_017530.1 arylesterase 3764601 12521535 PPUBIRD1_3367 Pseudomonas putida BIRD-1 arylesterase YP_005931167.1 3763996 R 931281 CDS YP_005931168.1 386012891 12521536 3764612..3765298 1 NC_017530.1 ABC transporter ATP-binding protein 3765298 12521536 PPUBIRD1_3368 Pseudomonas putida BIRD-1 ABC transporter ATP-binding protein YP_005931168.1 3764612 D 931281 CDS YP_005931169.1 386012892 12521537 3765295..3767802 1 NC_017530.1 hypothetical protein 3767802 12521537 PPUBIRD1_3369 Pseudomonas putida BIRD-1 hypothetical protein YP_005931169.1 3765295 D 931281 CDS YP_005931170.1 386012893 12521538 complement(3767866..3768354) 1 NC_017530.1 Transcription elongation factor greB; GreB 3768354 greB 12521538 greB Pseudomonas putida BIRD-1 GreB YP_005931170.1 3767866 R 931281 CDS YP_005931171.1 386012894 12521539 complement(3768366..3768674) 1 NC_017530.1 hypothetical protein 3768674 12521539 PPUBIRD1_3371 Pseudomonas putida BIRD-1 hypothetical protein YP_005931171.1 3768366 R 931281 CDS YP_005931172.1 386012895 12521540 complement(3768923..3769360) 1 NC_017530.1 DoxX family protein 3769360 12521540 PPUBIRD1_3372 Pseudomonas putida BIRD-1 DoxX family protein YP_005931172.1 3768923 R 931281 CDS YP_005931173.1 386012896 12521541 complement(3769473..3770966) 1 NC_017530.1 lytic transglycosylase 3770966 12521541 PPUBIRD1_3373 Pseudomonas putida BIRD-1 lytic transglycosylase YP_005931173.1 3769473 R 931281 CDS YP_005931174.1 386012897 12521542 3771037..3771834 1 NC_017530.1 TatD-related deoxyribonuclease 3771834 12521542 PPUBIRD1_3374 Pseudomonas putida BIRD-1 TatD-related deoxyribonuclease YP_005931174.1 3771037 D 931281 CDS YP_005931175.1 386012898 12521543 3771960..3773438 1 NC_017530.1 methyl-accepting chemotaxis sensory transducer 3773438 12521543 PPUBIRD1_3375 Pseudomonas putida BIRD-1 methyl-accepting chemotaxis sensory transducer YP_005931175.1 3771960 D 931281 CDS YP_005931176.1 386012899 12521544 3773514..3773882 1 NC_017530.1 hypothetical protein 3773882 12521544 PPUBIRD1_3376 Pseudomonas putida BIRD-1 hypothetical protein YP_005931176.1 3773514 D 931281 CDS YP_005931177.1 386012900 12521545 complement(3773924..3774721) 1 NC_017530.1 Acyl-CoA thioesterase-like protein 3774721 12521545 PPUBIRD1_3377 Pseudomonas putida BIRD-1 Acyl-CoA thioesterase-like protein YP_005931177.1 3773924 R 931281 CDS YP_005931178.1 386012901 12521546 complement(3774798..3775577) 1 NC_017530.1 CHAD domain-containing protein 3775577 12521546 PPUBIRD1_3378 Pseudomonas putida BIRD-1 CHAD domain-containing protein YP_005931178.1 3774798 R 931281 CDS YP_005931179.1 386012902 12521547 complement(3775592..3775870) 1 NC_017530.1 hypothetical protein 3775870 12521547 PPUBIRD1_3379 Pseudomonas putida BIRD-1 hypothetical protein YP_005931179.1 3775592 R 931281 CDS YP_005931180.1 386012903 12521548 3776042..3777085 1 NC_017530.1 patatin 3777085 12521548 PPUBIRD1_3380 Pseudomonas putida BIRD-1 patatin YP_005931180.1 3776042 D 931281 CDS YP_005931181.1 386012904 12521549 complement(3777202..3779073) 1 NC_017530.1 PpiC-type peptidyl-prolyl cis-trans isomerase 3779073 12521549 PPUBIRD1_3381 Pseudomonas putida BIRD-1 PpiC-type peptidyl-prolyl cis-trans isomerase YP_005931181.1 3777202 R 931281 CDS YP_005931182.1 386012905 12521550 complement(3779255..3779527) 1 NC_017530.1 histone family protein DNA-binding protein; HupB 3779527 hupB 12521550 hupB Pseudomonas putida BIRD-1 HupB YP_005931182.1 3779255 R 931281 CDS YP_005931183.1 386012906 12521551 complement(3779680..3782076) 1 NC_017530.1 ATP-dependent protease La; hypothetical protein 3782076 lon 12521551 lon Pseudomonas putida BIRD-1 hypothetical protein YP_005931183.1 3779680 R 931281 CDS YP_005931184.1 386012907 12521552 complement(3782240..3783523) 1 NC_017530.1 ATP-dependent Clp protease ATP-binding subunit clpX; protein ClpX 3783523 clpX 12521552 clpX Pseudomonas putida BIRD-1 protein ClpX YP_005931184.1 3782240 R 931281 CDS YP_005931185.1 386012908 12521553 complement(3783632..3784210) 1 NC_017530.1 ATP-dependent Clp protease proteolytic subunit; protein ClpP 3784210 clpP 12521553 clpP Pseudomonas putida BIRD-1 protein ClpP YP_005931185.1 3783632 R 931281 CDS YP_005931186.1 386012909 12521554 complement(3784365..3785678) 1 NC_017530.1 Trigger factor; hypothetical protein 3785678 tig 12521554 tig Pseudomonas putida BIRD-1 hypothetical protein YP_005931186.1 3784365 R 931281 CDS YP_005931187.1 386012910 12521555 complement(3785927..3786226) 1 NC_017530.1 hypothetical protein 3786226 12521555 PPUBIRD1_3387 Pseudomonas putida BIRD-1 hypothetical protein YP_005931187.1 3785927 R 931281 CDS YP_005931188.1 386012911 12521560 3787127..3787981 1 NC_017530.1 bifunctional; Bifunctional protein folD 1 3787981 12521560 PPUBIRD1_3388 Pseudomonas putida BIRD-1 Bifunctional protein folD 1 YP_005931188.1 3787127 D 931281 CDS YP_005931189.1 386012912 12521561 complement(3788107..3789846) 1 NC_017530.1 Extracellular solute-binding protein, family 1 3789846 12521561 PPUBIRD1_3389 Pseudomonas putida BIRD-1 Extracellular solute-binding protein, family 1 YP_005931189.1 3788107 R 931281 CDS YP_005931190.1 386012913 12521562 complement(3789886..3790158) 1 NC_017530.1 Small integral membrane protein-like protein 3790158 12521562 PPUBIRD1_3390 Pseudomonas putida BIRD-1 Small integral membrane protein-like protein YP_005931190.1 3789886 R 931281 CDS YP_005931191.1 386012914 12521563 complement(3790171..3790971) 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 3790971 12521563 PPUBIRD1_3391 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005931191.1 3790171 R 931281 CDS YP_005931192.1 386012915 12521564 complement(3790975..3791841) 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 3791841 12521564 PPUBIRD1_3392 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005931192.1 3790975 R 931281 CDS YP_005931193.1 386012916 12521565 complement(3791838..3792935) 1 NC_017530.1 sugar ABC transporter ATP-binding protein 3792935 12521565 PPUBIRD1_3393 Pseudomonas putida BIRD-1 sugar ABC transporter ATP-binding protein YP_005931193.1 3791838 R 931281 CDS YP_005931194.1 386012917 12521566 complement(3792935..3794029) 1 NC_017530.1 sugar ABC transporter ATP-binding protein 3794029 12521566 PPUBIRD1_3394 Pseudomonas putida BIRD-1 sugar ABC transporter ATP-binding protein YP_005931194.1 3792935 R 931281 CDS YP_005931195.1 386012918 12521567 3794253..3796001 1 NC_017530.1 GAF modulated Fis family sigma-54 specific transcriptional regulator 3796001 12521567 PPUBIRD1_3395 Pseudomonas putida BIRD-1 GAF modulated Fis family sigma-54 specific transcriptional regulator YP_005931195.1 3794253 D 931281 CDS YP_005931196.1 386012919 12521568 complement(3796110..3797798) 1 NC_017530.1 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 3797798 12521568 PPUBIRD1_3396 Pseudomonas putida BIRD-1 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) YP_005931196.1 3796110 R 931281 CDS YP_005931197.1 386012920 12521569 complement(3797812..3799377) 1 NC_017530.1 methyl-accepting chemotaxis sensory transducer 3799377 12521569 PPUBIRD1_3397 Pseudomonas putida BIRD-1 methyl-accepting chemotaxis sensory transducer YP_005931197.1 3797812 R 931281 CDS YP_005931198.1 386012921 12521570 3799659..3799958 1 NC_017530.1 XRE family transcriptional regulator 3799958 12521570 PPUBIRD1_3398 Pseudomonas putida BIRD-1 XRE family transcriptional regulator YP_005931198.1 3799659 D 931281 CDS YP_005931199.1 386012922 12521571 3800186..3801496 1 NC_017530.1 C4-dicarboxylate transporter DctA 3801496 12521571 PPUBIRD1_3399 Pseudomonas putida BIRD-1 C4-dicarboxylate transporter DctA YP_005931199.1 3800186 D 931281 CDS YP_005931200.1 386012923 12521572 3801540..3802238 1 NC_017530.1 GntR family transcriptional regulator 3802238 12521572 PPUBIRD1_3400 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005931200.1 3801540 D 931281 CDS YP_005931201.1 386012924 12521573 3802255..3802923 1 NC_017530.1 GntR family transcriptional regulator 3802923 12521573 PPUBIRD1_3401 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005931201.1 3802255 D 931281 CDS YP_005931202.1 386012925 12521574 3803076..3804125 1 NC_017530.1 hypothetical protein 3804125 12521574 PPUBIRD1_3402 Pseudomonas putida BIRD-1 hypothetical protein YP_005931202.1 3803076 D 931281 CDS YP_005931203.1 386012926 12521575 complement(3804165..3804593) 1 NC_017530.1 Transmembrane pair domain-containing protein 3804593 12521575 PPUBIRD1_3403 Pseudomonas putida BIRD-1 Transmembrane pair domain-containing protein YP_005931203.1 3804165 R 931281 CDS YP_005931204.1 386012927 12521576 3804695..3805573 1 NC_017530.1 LysR family transcriptional regulator 3805573 12521576 PPUBIRD1_3404 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931204.1 3804695 D 931281 CDS YP_005931205.1 386012928 12521577 3805716..3807602 1 NC_017530.1 Methyl-accepting chemotaxis transducer 3807602 12521577 PPUBIRD1_3405 Pseudomonas putida BIRD-1 Methyl-accepting chemotaxis transducer YP_005931205.1 3805716 D 931281 CDS YP_005931206.1 386012929 12521578 complement(3807656..3808720) 1 NC_017530.1 hypothetical protein 3808720 12521578 PPUBIRD1_3406 Pseudomonas putida BIRD-1 hypothetical protein YP_005931206.1 3807656 R 931281 CDS YP_005931207.1 386012930 12521579 complement(3808833..3809210) 1 NC_017530.1 endoribonuclease L-PSP 3809210 12521579 PPUBIRD1_3407 Pseudomonas putida BIRD-1 endoribonuclease L-PSP YP_005931207.1 3808833 R 931281 CDS YP_005931208.1 386012931 12521580 complement(3809223..3810359) 1 NC_017530.1 FAD dependent oxidoreductase 3810359 12521580 PPUBIRD1_3408 Pseudomonas putida BIRD-1 FAD dependent oxidoreductase YP_005931208.1 3809223 R 931281 CDS YP_005931209.1 386012932 12521581 3810511..3811068 1 NC_017530.1 XRE family transcriptional regulator 3811068 12521581 PPUBIRD1_3409 Pseudomonas putida BIRD-1 XRE family transcriptional regulator YP_005931209.1 3810511 D 931281 CDS YP_005931210.1 386012933 12521582 3811193..3811978 1 NC_017530.1 hypothetical protein 3811978 12521582 PPUBIRD1_3410 Pseudomonas putida BIRD-1 hypothetical protein YP_005931210.1 3811193 D 931281 CDS YP_005931211.1 386012934 12521583 complement(3811982..3812521) 1 NC_017530.1 phosphoglycerate mutase 3812521 12521583 PPUBIRD1_3411 Pseudomonas putida BIRD-1 phosphoglycerate mutase YP_005931211.1 3811982 R 931281 CDS YP_005931212.1 386012935 12521584 complement(3812648..3814882) 1 NC_017530.1 Ferric enterobactin receptor; FepA 3814882 fepA 12521584 fepA Pseudomonas putida BIRD-1 FepA YP_005931212.1 3812648 R 931281 CDS YP_005931213.1 386012936 12521585 complement(3815246..3817054) 1 NC_017530.1 ABC transporter 3817054 12521585 PPUBIRD1_3413 Pseudomonas putida BIRD-1 ABC transporter YP_005931213.1 3815246 R 931281 CDS YP_005931214.1 386012937 12521591 3823094..3823981 1 NC_017530.1 EamA family protein 3823981 12521591 PPUBIRD1_3414 Pseudomonas putida BIRD-1 EamA family protein YP_005931214.1 3823094 D 931281 CDS YP_005931215.1 386012938 12521592 3824174..3824455 1 NC_017530.1 Lipoprotein 3824455 12521592 PPUBIRD1_3415 Pseudomonas putida BIRD-1 Lipoprotein YP_005931215.1 3824174 D 931281 CDS YP_005931216.1 386012939 12521593 complement(3824494..3826302) 1 NC_017530.1 Peptidase M24 3826302 12521593 PPUBIRD1_3416 Pseudomonas putida BIRD-1 Peptidase M24 YP_005931216.1 3824494 R 931281 CDS YP_005931217.1 386012940 12521594 3826529..3827641 1 NC_017530.1 hypothetical protein 3827641 12521594 PPUBIRD1_3417 Pseudomonas putida BIRD-1 hypothetical protein YP_005931217.1 3826529 D 931281 CDS YP_005931218.1 386012941 12521595 3827625..3828395 1 NC_017530.1 Prolyl oligopeptidase family protein 3828395 12521595 PPUBIRD1_3418 Pseudomonas putida BIRD-1 Prolyl oligopeptidase family protein YP_005931218.1 3827625 D 931281 CDS YP_005931219.1 386012942 12521596 complement(3828374..3828754) 1 NC_017530.1 hypothetical protein 3828754 12521596 PPUBIRD1_3419 Pseudomonas putida BIRD-1 hypothetical protein YP_005931219.1 3828374 R 931281 CDS YP_005931220.1 386012943 12521597 complement(3828836..3829828) 1 NC_017530.1 AraC family transcriptional regulator 3829828 12521597 PPUBIRD1_3420 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005931220.1 3828836 R 931281 CDS YP_005931221.1 386012944 12521598 3829911..3830459 1 NC_017530.1 Isochorismatase superfamily hydrolase 3830459 12521598 PPUBIRD1_3421 Pseudomonas putida BIRD-1 Isochorismatase superfamily hydrolase YP_005931221.1 3829911 D 931281 CDS YP_005931222.1 386012945 12521599 complement(3830508..3831071) 1 NC_017530.1 XRE family transcriptional regulator 3831071 12521599 PPUBIRD1_3422 Pseudomonas putida BIRD-1 XRE family transcriptional regulator YP_005931222.1 3830508 R 931281 CDS YP_005931223.1 386012946 12521600 3831144..3832106 1 NC_017530.1 hypothetical protein 3832106 12521600 PPUBIRD1_3423 Pseudomonas putida BIRD-1 hypothetical protein YP_005931223.1 3831144 D 931281 CDS YP_005931224.1 386012947 12521601 3832257..3835172 1 NC_017530.1 K(+)/H(+) antiporter subunit A/B 3835172 12521601 PPUBIRD1_3424 Pseudomonas putida BIRD-1 K(+)/H(+) antiporter subunit A/B YP_005931224.1 3832257 D 931281 CDS YP_005931225.1 386012948 12521602 3835172..3835516 1 NC_017530.1 Putative monovalent cation/H+ antiporter subunit C 3835516 12521602 PPUBIRD1_3425 Pseudomonas putida BIRD-1 Putative monovalent cation/H+ antiporter subunit C YP_005931225.1 3835172 D 931281 CDS YP_005931226.1 386012949 12521603 3835522..3837192 1 NC_017530.1 Putative monovalent cation/H+ antiporter subunit D 3837192 12521603 PPUBIRD1_3426 Pseudomonas putida BIRD-1 Putative monovalent cation/H+ antiporter subunit D YP_005931226.1 3835522 D 931281 CDS YP_005931227.1 386012950 12521604 3837189..3837677 1 NC_017530.1 Putative monovalent cation/H+ antiporter subunit E 3837677 12521604 PPUBIRD1_3427 Pseudomonas putida BIRD-1 Putative monovalent cation/H+ antiporter subunit E YP_005931227.1 3837189 D 931281 CDS YP_005931228.1 386012951 12521605 3837674..3837952 1 NC_017530.1 Putative monovalent cation/H+ antiporter subunit F 3837952 12521605 PPUBIRD1_3428 Pseudomonas putida BIRD-1 Putative monovalent cation/H+ antiporter subunit F YP_005931228.1 3837674 D 931281 CDS YP_005931229.1 386012952 12521606 3837949..3838314 1 NC_017530.1 Putative monovalent cation/H+ antiporter subunit G 3838314 12521606 PPUBIRD1_3429 Pseudomonas putida BIRD-1 Putative monovalent cation/H+ antiporter subunit G YP_005931229.1 3837949 D 931281 CDS YP_005931230.1 386012953 12521607 complement(3838327..3838539) 1 NC_017530.1 hypothetical protein 3838539 12521607 PPUBIRD1_3430 Pseudomonas putida BIRD-1 hypothetical protein YP_005931230.1 3838327 R 931281 CDS YP_005931231.1 386012954 12521608 complement(3838536..3839006) 1 NC_017530.1 hypothetical protein 3839006 12521608 PPUBIRD1_3431 Pseudomonas putida BIRD-1 hypothetical protein YP_005931231.1 3838536 R 931281 CDS YP_005931232.1 386012955 12521609 complement(3839352..3839549) 1 NC_017530.1 hypothetical protein 3839549 12521609 PPUBIRD1_3432 Pseudomonas putida BIRD-1 hypothetical protein YP_005931232.1 3839352 R 931281 CDS YP_005931233.1 386012956 12521610 complement(3839725..3840168) 1 NC_017530.1 TraR/DksA family transcriptional regulator 3840168 12521610 PPUBIRD1_3433 Pseudomonas putida BIRD-1 TraR/DksA family transcriptional regulator YP_005931233.1 3839725 R 931281 CDS YP_005931234.1 386012957 12521611 complement(3840690..3841463) 1 NC_017530.1 enoyl-CoA hydratase/isomerase; FadB_2 3841463 fadB_2 12521611 fadB_2 Pseudomonas putida BIRD-1 FadB_2 YP_005931234.1 3840690 R 931281 CDS YP_005931235.1 386012958 12521612 complement(3841477..3842604) 1 NC_017530.1 Acyl-CoA dehydrogenase domain-containing protein 3842604 12521612 PPUBIRD1_3435 Pseudomonas putida BIRD-1 Acyl-CoA dehydrogenase domain-containing protein YP_005931235.1 3841477 R 931281 CDS YP_005931236.1 386012959 12521613 complement(3842613..3843806) 1 NC_017530.1 Acetyl-CoA acetyltransferase 3843806 12521613 PPUBIRD1_3436 Pseudomonas putida BIRD-1 Acetyl-CoA acetyltransferase YP_005931236.1 3842613 R 931281 CDS YP_005931237.1 386012960 12521614 complement(3843818..3844585) 1 NC_017530.1 short-chain dehydrogenase/reductase SDR; bifunctional; FadB2 3844585 fadB2 12521614 fadB2 Pseudomonas putida BIRD-1 FadB2 YP_005931237.1 3843818 R 931281 CDS YP_005931238.1 386012961 12521615 complement(3844599..3846248) 1 NC_017530.1 AMP-dependent synthetase and ligase; FadD protein 3846248 fadD 12521615 fadD Pseudomonas putida BIRD-1 FadD protein YP_005931238.1 3844599 R 931281 CDS YP_005931239.1 386012962 12521616 complement(3846368..3850813) 1 NC_017530.1 Leucine-rich repeat-containing protein 3850813 12521616 PPUBIRD1_3439 Pseudomonas putida BIRD-1 Leucine-rich repeat-containing protein YP_005931239.1 3846368 R 931281 CDS YP_005931240.1 386012963 12521617 complement(3850959..3851981) 1 NC_017530.1 AraC family transcriptional regulator 3851981 12521617 PPUBIRD1_3440 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005931240.1 3850959 R 931281 CDS YP_005931241.1 386012964 12521618 complement(3852182..3853045) 1 NC_017530.1 LysR family transcriptional regulator 3853045 12521618 PPUBIRD1_3441 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931241.1 3852182 R 931281 CDS YP_005931242.1 386012965 12521619 3853158..3854264 1 NC_017530.1 2-aminoethylphosphonate--pyruvate transaminase 3854264 12521619 PPUBIRD1_3442 Pseudomonas putida BIRD-1 2-aminoethylphosphonate--pyruvate transaminase YP_005931242.1 3853158 D 931281 CDS YP_005931243.1 386012966 12521620 3854298..3855125 1 NC_017530.1 Phosphonoacetaldehyde hydrolase 3855125 12521620 PPUBIRD1_3443 Pseudomonas putida BIRD-1 Phosphonoacetaldehyde hydrolase YP_005931243.1 3854298 D 931281 CDS YP_005931244.1 386012967 12521621 complement(3855554..3856618) 1 NC_017530.1 hypothetical protein 3856618 12521621 PPUBIRD1_3444 Pseudomonas putida BIRD-1 hypothetical protein YP_005931244.1 3855554 R 931281 CDS YP_005931245.1 386012968 12521622 3856752..3858086 1 NC_017530.1 protease HI0419 3858086 12521622 PPUBIRD1_3445 Pseudomonas putida BIRD-1 protease HI0419 YP_005931245.1 3856752 D 931281 CDS YP_005931246.1 386012969 12521623 3858165..3859889 1 NC_017530.1 CopA-like copper resistance protein 3859889 12521623 PPUBIRD1_3446 Pseudomonas putida BIRD-1 CopA-like copper resistance protein YP_005931246.1 3858165 D 931281 CDS YP_005931247.1 386012970 12521624 3859882..3860766 1 NC_017530.1 Copper resistance protein B, putative 3860766 12521624 PPUBIRD1_3447 Pseudomonas putida BIRD-1 Copper resistance protein B, putative YP_005931247.1 3859882 D 931281 CDS YP_005931248.1 386012971 12521625 3860781..3861209 1 NC_017530.1 hypothetical protein 3861209 12521625 PPUBIRD1_3448 Pseudomonas putida BIRD-1 hypothetical protein YP_005931248.1 3860781 D 931281 CDS YP_005931249.1 386012972 12521626 3861209..3861646 1 NC_017530.1 hypothetical protein 3861646 12521626 PPUBIRD1_3449 Pseudomonas putida BIRD-1 hypothetical protein YP_005931249.1 3861209 D 931281 CDS YP_005931250.1 386012973 12521627 3861722..3862720 1 NC_017530.1 Alpha/beta fold family hydrolase 3862720 12521627 PPUBIRD1_3450 Pseudomonas putida BIRD-1 Alpha/beta fold family hydrolase YP_005931250.1 3861722 D 931281 CDS YP_005931251.1 386012974 12521628 complement(3862795..3863376) 1 NC_017530.1 hypothetical protein 3863376 12521628 PPUBIRD1_3451 Pseudomonas putida BIRD-1 hypothetical protein YP_005931251.1 3862795 R 931281 CDS YP_005931252.1 386012975 12521629 complement(3863390..3864496) 1 NC_017530.1 AFG1 family ATPase 3864496 12521629 PPUBIRD1_3452 Pseudomonas putida BIRD-1 AFG1 family ATPase YP_005931252.1 3863390 R 931281 CDS YP_005931253.1 386012976 12521630 complement(3864538..3865683) 1 NC_017530.1 Glucose sorbosone dehydrogenase 3865683 12521630 PPUBIRD1_3453 Pseudomonas putida BIRD-1 Glucose sorbosone dehydrogenase YP_005931253.1 3864538 R 931281 CDS YP_005931254.1 386012977 12521631 complement(3865706..3866023) 1 NC_017530.1 hypothetical protein 3866023 12521631 PPUBIRD1_3454 Pseudomonas putida BIRD-1 hypothetical protein YP_005931254.1 3865706 R 931281 CDS YP_005931255.1 386012978 12521632 complement(3866179..3867144) 1 NC_017530.1 Agmatinase 3867144 12521632 PPUBIRD1_3455 Pseudomonas putida BIRD-1 Agmatinase YP_005931255.1 3866179 R 931281 CDS YP_005931256.1 386012979 12521633 complement(3867170..3868249) 1 NC_017530.1 Periplasmic polyamine-binding protein, putative 3868249 12521633 PPUBIRD1_3456 Pseudomonas putida BIRD-1 Periplasmic polyamine-binding protein, putative YP_005931256.1 3867170 R 931281 CDS YP_005931257.1 386012980 12521634 3868352..3869242 1 NC_017530.1 LysR family transcriptional regulator 3869242 12521634 PPUBIRD1_3457 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931257.1 3868352 D 931281 CDS YP_005931258.1 386012981 12521635 complement(3869423..3871858) 1 NC_017530.1 TonB-dependent siderophore receptor 3871858 12521635 PPUBIRD1_3458 Pseudomonas putida BIRD-1 TonB-dependent siderophore receptor YP_005931258.1 3869423 R 931281 CDS YP_005931259.1 386012982 12521636 complement(3872076..3873200) 1 NC_017530.1 ECF subfamily RNA polymerase sigma factor 3873200 12521636 PPUBIRD1_3459 Pseudomonas putida BIRD-1 ECF subfamily RNA polymerase sigma factor YP_005931259.1 3872076 R 931281 CDS YP_005931260.1 386012983 12521637 3873332..3873811 1 NC_017530.1 Putative lipoprotein 3873811 12521637 PPUBIRD1_3460 Pseudomonas putida BIRD-1 Putative lipoprotein YP_005931260.1 3873332 D 931281 CDS YP_005931261.1 386012984 12521638 complement(3873832..3874095) 1 NC_017530.1 hypothetical protein 3874095 12521638 PPUBIRD1_3461 Pseudomonas putida BIRD-1 hypothetical protein YP_005931261.1 3873832 R 931281 CDS YP_005931262.1 386012985 12521639 3874094..3874543 1 NC_017530.1 hypothetical protein 3874543 12521639 PPUBIRD1_3462 Pseudomonas putida BIRD-1 hypothetical protein YP_005931262.1 3874094 D 931281 CDS YP_005931263.1 386012986 12521640 complement(3874566..3875183) 1 NC_017530.1 TRNA--hydroxylase 3875183 12521640 PPUBIRD1_3463 Pseudomonas putida BIRD-1 TRNA--hydroxylase YP_005931263.1 3874566 R 931281 CDS YP_005931264.1 386012987 12521641 3875338..3876201 1 NC_017530.1 Universal stress protein 3876201 12521641 PPUBIRD1_3464 Pseudomonas putida BIRD-1 Universal stress protein YP_005931264.1 3875338 D 931281 CDS YP_005931265.1 386012988 12521642 complement(3876316..3876519) 1 NC_017530.1 Formate dehydrogenase, delta subunit, putative 3876519 12521642 PPUBIRD1_3465 Pseudomonas putida BIRD-1 Formate dehydrogenase, delta subunit, putative YP_005931265.1 3876316 R 931281 CDS YP_005931266.1 386012989 12521643 complement(3876516..3879398) 1 NC_017530.1 Formate dehydrogenase subunit alpha 3879398 12521643 PPUBIRD1_3466 Pseudomonas putida BIRD-1 Formate dehydrogenase subunit alpha YP_005931266.1 3876516 R 931281 CDS YP_005931267.1 386012990 12521644 complement(3879395..3880954) 1 NC_017530.1 NADH dehydrogenase (quinone) 3880954 12521644 PPUBIRD1_3467 Pseudomonas putida BIRD-1 NADH dehydrogenase (quinone) YP_005931267.1 3879395 R 931281 CDS YP_005931268.1 386012991 12521645 complement(3880948..3881430) 1 NC_017530.1 Formate dehydrogenase subunit gamma 3881430 12521645 PPUBIRD1_3468 Pseudomonas putida BIRD-1 Formate dehydrogenase subunit gamma YP_005931268.1 3880948 R 931281 CDS YP_005931269.1 386012992 12521646 complement(3881830..3882219) 1 NC_017530.1 ProQ activator of osmoprotectant transporter ProP 3882219 12521646 PPUBIRD1_3469 Pseudomonas putida BIRD-1 ProQ activator of osmoprotectant transporter ProP YP_005931269.1 3881830 R 931281 CDS YP_005931270.1 386012993 12521647 complement(3882463..3883017) 1 NC_017530.1 Cro/CI family transcriptional regulator 3883017 12521647 PPUBIRD1_3470 Pseudomonas putida BIRD-1 Cro/CI family transcriptional regulator YP_005931270.1 3882463 R 931281 CDS YP_005931271.1 386012994 12521648 complement(3883201..3884559) 1 NC_017530.1 Putative aminotransferase 3884559 12521648 PPUBIRD1_3471 Pseudomonas putida BIRD-1 Putative aminotransferase YP_005931271.1 3883201 R 931281 CDS YP_005931272.1 386012995 12521649 complement(3884629..3885477) 1 NC_017530.1 Peptidase C26 3885477 12521649 PPUBIRD1_3472 Pseudomonas putida BIRD-1 Peptidase C26 YP_005931272.1 3884629 R 931281 CDS YP_005931273.1 386012996 12521650 complement(3885487..3886833) 1 NC_017530.1 Glutamine synthetase, putative 3886833 12521650 PPUBIRD1_3473 Pseudomonas putida BIRD-1 Glutamine synthetase, putative YP_005931273.1 3885487 R 931281 CDS YP_005931274.1 386012997 12521651 complement(3886861..3887415) 1 NC_017530.1 Transcriptional regulator, putative 3887415 12521651 PPUBIRD1_3474 Pseudomonas putida BIRD-1 Transcriptional regulator, putative YP_005931274.1 3886861 R 931281 CDS YP_005931275.1 386012998 12521652 3887593..3888522 1 NC_017530.1 LysR family transcriptional regulator 3888522 12521652 PPUBIRD1_3475 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931275.1 3887593 D 931281 CDS YP_005931276.1 386012999 12521653 3888622..3889326 1 NC_017530.1 short-chain dehydrogenase 3889326 12521653 PPUBIRD1_3476 Pseudomonas putida BIRD-1 short-chain dehydrogenase YP_005931276.1 3888622 D 931281 CDS YP_005931277.1 386013000 12521654 complement(3889429..3890037) 1 NC_017530.1 Alpha/beta hydrolase fold protein 3890037 12521654 PPUBIRD1_3477 Pseudomonas putida BIRD-1 Alpha/beta hydrolase fold protein YP_005931277.1 3889429 R 931281 CDS YP_005931278.1 386013001 12521655 3890756..3891595 1 NC_017530.1 AraC family transcriptional regulator 3891595 12521655 PPUBIRD1_3479 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005931278.1 3890756 D 931281 CDS YP_005931279.1 386013002 12521656 complement(3891667..3892641) 1 NC_017530.1 hypothetical protein 3892641 12521656 PPUBIRD1_3480 Pseudomonas putida BIRD-1 hypothetical protein YP_005931279.1 3891667 R 931281 CDS YP_005931280.1 386013003 12521657 complement(3892638..3893201) 1 NC_017530.1 TetR family transcriptional regulator 3893201 12521657 PPUBIRD1_3481 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005931280.1 3892638 R 931281 CDS YP_005931281.1 386013004 12521658 3894545..3895171 1 NC_017530.1 Lysine exporter protein LysE/YggA 3895171 12521658 PPUBIRD1_3483 Pseudomonas putida BIRD-1 Lysine exporter protein LysE/YggA YP_005931281.1 3894545 D 931281 CDS YP_005931282.1 386013005 12521659 complement(3895217..3895525) 1 NC_017530.1 Chorismate mutase family protein 3895525 12521659 PPUBIRD1_3484 Pseudomonas putida BIRD-1 Chorismate mutase family protein YP_005931282.1 3895217 R 931281 CDS YP_005931283.1 386013006 12521660 3896044..3896982 1 NC_017530.1 TRNA-dihydrouridine synthase A 3896982 12521660 PPUBIRD1_3485 Pseudomonas putida BIRD-1 TRNA-dihydrouridine synthase A YP_005931283.1 3896044 D 931281 CDS YP_005931284.1 386013007 12521661 3897139..3898065 1 NC_017530.1 Transaldolase 3898065 12521661 PPUBIRD1_3486 Pseudomonas putida BIRD-1 Transaldolase YP_005931284.1 3897139 D 931281 CDS YP_005931285.1 386013008 12521662 3898245..3900098 1 NC_017530.1 hypothetical protein 3900098 12521662 PPUBIRD1_3487 Pseudomonas putida BIRD-1 hypothetical protein YP_005931285.1 3898245 D 931281 CDS YP_005931286.1 386013009 12521663 complement(3900217..3900699) 1 NC_017530.1 anti-sigma-factor antagonist 3900699 12521663 PPUBIRD1_3488 Pseudomonas putida BIRD-1 anti-sigma-factor antagonist YP_005931286.1 3900217 R 931281 CDS YP_005931287.1 386013010 12521664 complement(3900696..3901877) 1 NC_017530.1 Response regulator 3901877 12521664 PPUBIRD1_3489 Pseudomonas putida BIRD-1 Response regulator YP_005931287.1 3900696 R 931281 CDS YP_005931288.1 386013011 12521665 3902148..3902447 1 NC_017530.1 type IV pilus assembly PilZ 3902447 12521665 PPUBIRD1_3490 Pseudomonas putida BIRD-1 type IV pilus assembly PilZ YP_005931288.1 3902148 D 931281 CDS YP_005931289.1 386013012 12521666 complement(3902482..3903189) 1 NC_017530.1 VacJ family lipoprotein 3903189 12521666 PPUBIRD1_3491 Pseudomonas putida BIRD-1 VacJ family lipoprotein YP_005931289.1 3902482 R 931281 CDS YP_005931290.1 386013013 12521667 3903391..3903954 1 NC_017530.1 hypothetical protein 3903954 12521667 PPUBIRD1_3492 Pseudomonas putida BIRD-1 hypothetical protein YP_005931290.1 3903391 D 931281 CDS YP_005931291.1 386013014 12521668 3904077..3904340 1 NC_017530.1 hypothetical protein 3904340 12521668 PPUBIRD1_3493 Pseudomonas putida BIRD-1 hypothetical protein YP_005931291.1 3904077 D 931281 CDS YP_005931292.1 386013015 12521669 complement(3904375..3905205) 1 NC_017530.1 NADPH-dependent 7-cyano-7-deazaguanine reductase; protein QueF 3905205 queF 12521669 queF Pseudomonas putida BIRD-1 protein QueF YP_005931292.1 3904375 R 931281 CDS YP_005931293.1 386013016 12521670 complement(3905274..3905795) 1 NC_017530.1 Plastocyanin/azurin family copper binding protein 3905795 12521670 PPUBIRD1_3495 Pseudomonas putida BIRD-1 Plastocyanin/azurin family copper binding protein YP_005931293.1 3905274 R 931281 CDS YP_005931294.1 386013017 12521671 3905996..3906676 1 NC_017530.1 Two component heavy metal response transcriptional regulator 3906676 12521671 PPUBIRD1_3496 Pseudomonas putida BIRD-1 Two component heavy metal response transcriptional regulator YP_005931294.1 3905996 D 931281 CDS YP_005931295.1 386013018 12521672 3906673..3908025 1 NC_017530.1 Heavy metal sensor signal transduction histidine kinase 3908025 12521672 PPUBIRD1_3497 Pseudomonas putida BIRD-1 Heavy metal sensor signal transduction histidine kinase YP_005931295.1 3906673 D 931281 CDS YP_005931296.1 386013019 12521673 complement(3908065..3909306) 1 NC_017530.1 LolC/E family lipoprotein releasing system, transmembrane protein 3909306 12521673 PPUBIRD1_3498 Pseudomonas putida BIRD-1 LolC/E family lipoprotein releasing system, transmembrane protein YP_005931296.1 3908065 R 931281 CDS YP_005931297.1 386013020 12521674 complement(3909367..3910065) 1 NC_017530.1 lipoprotein releasing system, ATP-binding protein; protein LolD 3910065 lolD 12521674 lolD Pseudomonas putida BIRD-1 protein LolD YP_005931297.1 3909367 R 931281 CDS YP_005931298.1 386013021 12521675 complement(3910058..3911308) 1 NC_017530.1 lipoprotein releasing system, transmembrane protein, LolC/E family; protein LolC 3911308 lolC 12521675 lolC Pseudomonas putida BIRD-1 protein LolC YP_005931298.1 3910058 R 931281 CDS YP_005931299.1 386013022 12521676 3911507..3911986 1 NC_017530.1 type IV pilus assembly PilZ 3911986 12521676 PPUBIRD1_3501 Pseudomonas putida BIRD-1 type IV pilus assembly PilZ YP_005931299.1 3911507 D 931281 CDS YP_005931300.1 386013023 12521677 3912018..3912734 1 NC_017530.1 glycerophosphoryl diester phosphodiesterase 3912734 12521677 PPUBIRD1_3502 Pseudomonas putida BIRD-1 glycerophosphoryl diester phosphodiesterase YP_005931300.1 3912018 D 931281 CDS YP_005931301.1 386013024 12521678 complement(3912783..3914177) 1 NC_017530.1 Soluble pyridine nucleotide transhydrogenase; SthA 3914177 sthA 12521678 sthA Pseudomonas putida BIRD-1 SthA YP_005931301.1 3912783 R 931281 CDS YP_005931302.1 386013025 12521679 complement(3914382..3915380) 1 NC_017530.1 ApbE family lipoprotein 3915380 12521679 PPUBIRD1_3504 Pseudomonas putida BIRD-1 ApbE family lipoprotein YP_005931302.1 3914382 R 931281 CDS YP_005931303.1 386013026 12521680 complement(3915558..3917006) 1 NC_017530.1 glyceraldehyde-3-phosphate dehydrogenase; Gap_2 3917006 gap_2 12521680 gap_2 Pseudomonas putida BIRD-1 Gap_2 YP_005931303.1 3915558 R 931281 CDS YP_005931304.1 386013027 12521681 3917213..3920638 1 NC_017530.1 Transcription-repair-coupling factor; hypothetical protein 3920638 mfd 12521681 mfd Pseudomonas putida BIRD-1 hypothetical protein YP_005931304.1 3917213 D 931281 CDS YP_005931305.1 386013028 12521682 3920648..3921220 1 NC_017530.1 hypothetical protein 3921220 12521682 PPUBIRD1_3507 Pseudomonas putida BIRD-1 hypothetical protein YP_005931305.1 3920648 D 931281 CDS YP_005931306.1 386013029 12521683 3921225..3924557 1 NC_017530.1 Non-specific serine/threonine protein kinase 3924557 12521683 PPUBIRD1_3508 Pseudomonas putida BIRD-1 Non-specific serine/threonine protein kinase YP_005931306.1 3921225 D 931281 CDS YP_005931307.1 386013030 12521684 complement(3924684..3925694) 1 NC_017530.1 beta-hexosaminidase; protein NagZ 3925694 nagZ 12521684 nagZ Pseudomonas putida BIRD-1 protein NagZ YP_005931307.1 3924684 R 931281 CDS YP_005931308.1 386013031 12521685 complement(3925872..3926579) 1 NC_017530.1 TetR family transcriptional regulator 3926579 12521685 PPUBIRD1_3510 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005931308.1 3925872 R 931281 CDS YP_005931309.1 386013032 12521686 3926795..3927403 1 NC_017530.1 LexA repressor 1; LexA protein 3927403 lexA 12521686 lexA Pseudomonas putida BIRD-1 LexA protein YP_005931309.1 3926795 D 931281 CDS YP_005931310.1 386013033 12521687 3927417..3927893 1 NC_017530.1 Cell division inhibitor-related protein 3927893 12521687 PPUBIRD1_3512 Pseudomonas putida BIRD-1 Cell division inhibitor-related protein YP_005931310.1 3927417 D 931281 CDS YP_005931311.1 386013034 12521688 complement(3927944..3928177) 1 NC_017530.1 hypothetical protein 3928177 12521688 PPUBIRD1_3513 Pseudomonas putida BIRD-1 hypothetical protein YP_005931311.1 3927944 R 931281 CDS YP_005931312.1 386013035 12521689 complement(3928228..3928743) 1 NC_017530.1 hypothetical protein 3928743 12521689 PPUBIRD1_3514 Pseudomonas putida BIRD-1 hypothetical protein YP_005931312.1 3928228 R 931281 CDS YP_005931313.1 386013036 12521690 complement(3928933..3931542) 1 NC_017530.1 DNA topoisomerase 1; TopA protein 3931542 topA 12521690 topA Pseudomonas putida BIRD-1 TopA protein YP_005931313.1 3928933 R 931281 CDS YP_005931314.1 386013037 12521691 complement(3931643..3931894) 1 NC_017530.1 hypothetical protein 3931894 12521691 PPUBIRD1_3516 Pseudomonas putida BIRD-1 hypothetical protein YP_005931314.1 3931643 R 931281 CDS YP_005931315.1 386013038 12521692 complement(3931970..3933145) 1 NC_017530.1 3-ketoacyl-CoA thiolase; protein FadA 3933145 fadA 12521692 fadA Pseudomonas putida BIRD-1 protein FadA YP_005931315.1 3931970 R 931281 CDS YP_005931316.1 386013039 12521693 complement(3933177..3935324) 1 NC_017530.1 Fatty acid oxidation complex subunit alpha; bifunctional; FadB_3 3935324 fadB_3 12521693 fadB_3 Pseudomonas putida BIRD-1 FadB_3 YP_005931316.1 3933177 R 931281 CDS YP_005931317.1 386013040 12521694 complement(3935942..3936379) 1 NC_017530.1 hypothetical protein 3936379 12521694 PPUBIRD1_3519 Pseudomonas putida BIRD-1 hypothetical protein YP_005931317.1 3935942 R 931281 CDS YP_005931318.1 386013041 12521695 3936490..3936930 1 NC_017530.1 Universal stress protein 3936930 12521695 PPUBIRD1_3520 Pseudomonas putida BIRD-1 Universal stress protein YP_005931318.1 3936490 D 931281 CDS YP_005931319.1 386013042 12521696 complement(3937038..3938966) 1 NC_017530.1 ABC transporter ATP-binding protein 3938966 12521696 PPUBIRD1_3521 Pseudomonas putida BIRD-1 ABC transporter ATP-binding protein YP_005931319.1 3937038 R 931281 CDS YP_005931320.1 386013043 12521697 3939187..3941112 1 NC_017530.1 lytic transglycosylase 3941112 12521697 PPUBIRD1_3522 Pseudomonas putida BIRD-1 lytic transglycosylase YP_005931320.1 3939187 D 931281 CDS YP_005931321.1 386013044 12521698 complement(3941224..3942027) 1 NC_017530.1 MOSC domain-containing protein 3942027 12521698 PPUBIRD1_3523 Pseudomonas putida BIRD-1 MOSC domain-containing protein YP_005931321.1 3941224 R 931281 CDS YP_005931322.1 386013045 12521699 complement(3942083..3943018) 1 NC_017530.1 chemotaxis protein CheV; CheV_3 3943018 cheV_3 12521699 cheV_3 Pseudomonas putida BIRD-1 CheV_3 YP_005931322.1 3942083 R 931281 CDS YP_005931323.1 386013046 12521700 3943370..3943879 1 NC_017530.1 Putative CheA signal transduction histidine kinase 3943879 12521700 PPUBIRD1_3525 Pseudomonas putida BIRD-1 Putative CheA signal transduction histidine kinase YP_005931323.1 3943370 D 931281 CDS YP_005931324.1 386013047 12521701 3944246..3945142 1 NC_017530.1 Sensor histidine kinase 3945142 12521701 PPUBIRD1_3526 Pseudomonas putida BIRD-1 Sensor histidine kinase YP_005931324.1 3944246 D 931281 CDS YP_005931325.1 386013048 12521702 3945132..3945791 1 NC_017530.1 LuxR family DNA-binding response regulator 3945791 12521702 PPUBIRD1_3527 Pseudomonas putida BIRD-1 LuxR family DNA-binding response regulator YP_005931325.1 3945132 D 931281 CDS YP_005931326.1 386013049 12521703 complement(3945775..3946662) 1 NC_017530.1 hypothetical protein 3946662 12521703 PPUBIRD1_3528 Pseudomonas putida BIRD-1 hypothetical protein YP_005931326.1 3945775 R 931281 CDS YP_005931327.1 386013050 12521704 3946919..3948166 1 NC_017530.1 Glycosyl transferase, putative 3948166 12521704 PPUBIRD1_3529 Pseudomonas putida BIRD-1 Glycosyl transferase, putative YP_005931327.1 3946919 D 931281 CDS YP_005931328.1 386013051 12521705 complement(3948155..3949372) 1 NC_017530.1 Molybdenum cofactor synthesis domain-containing protein 3949372 12521705 PPUBIRD1_3530 Pseudomonas putida BIRD-1 Molybdenum cofactor synthesis domain-containing protein YP_005931328.1 3948155 R 931281 CDS YP_005931329.1 386013052 12521706 complement(3949365..3949904) 1 NC_017530.1 molybdenum cofactor biosynthesis protein B; MoaB_2 3949904 moaB_2 12521706 moaB_2 Pseudomonas putida BIRD-1 MoaB_2 YP_005931329.1 3949365 R 931281 CDS YP_005931330.1 386013053 12521707 3950092..3950313 1 NC_017530.1 Putative lipoprotein 3950313 12521707 PPUBIRD1_3532 Pseudomonas putida BIRD-1 Putative lipoprotein YP_005931330.1 3950092 D 931281 CDS YP_005931331.1 386013054 12521709 complement(3950578..3952194) 1 NC_017530.1 methyl-accepting chemotaxis sensory transducer 3952194 12521709 PPUBIRD1_3533 Pseudomonas putida BIRD-1 methyl-accepting chemotaxis sensory transducer YP_005931331.1 3950578 R 931281 CDS YP_005931332.1 386013055 12521710 complement(3952367..3954130) 1 NC_017530.1 Lipid ABC transporter ATPase/inner membrane protein 3954130 12521710 PPUBIRD1_3534 Pseudomonas putida BIRD-1 Lipid ABC transporter ATPase/inner membrane protein YP_005931332.1 3952367 R 931281 CDS YP_005931333.1 386013056 12521711 3954341..3954514 1 NC_017530.1 hypothetical protein 3954514 12521711 PPUBIRD1_3535 Pseudomonas putida BIRD-1 hypothetical protein YP_005931333.1 3954341 D 931281 CDS YP_005931334.1 386013057 12521712 complement(3954629..3955771) 1 NC_017530.1 erythronate-4-phosphate dehydrogenase 3955771 12521712 PPUBIRD1_3536 Pseudomonas putida BIRD-1 erythronate-4-phosphate dehydrogenase YP_005931334.1 3954629 R 931281 CDS YP_005931335.1 386013058 12521713 complement(3955832..3956074) 1 NC_017530.1 TusA-like sulfurtransferase 3956074 12521713 PPUBIRD1_3537 Pseudomonas putida BIRD-1 TusA-like sulfurtransferase YP_005931335.1 3955832 R 931281 CDS YP_005931336.1 386013059 12521714 complement(3956363..3957427) 1 NC_017530.1 Ribosomal RNA large subunit methyltransferase M 3957427 12521714 PPUBIRD1_3538 Pseudomonas putida BIRD-1 Ribosomal RNA large subunit methyltransferase M YP_005931336.1 3956363 R 931281 CDS YP_005931337.1 386013060 12521715 3957652..3960393 1 NC_017530.1 Aconitate hydratase 1; protein AcnA 3960393 acnA 12521715 acnA Pseudomonas putida BIRD-1 protein AcnA YP_005931337.1 3957652 D 931281 CDS YP_005931338.1 386013061 12521716 3960535..3962100 1 NC_017530.1 methyl-accepting chemotaxis sensory transducer 3962100 12521716 PPUBIRD1_3540 Pseudomonas putida BIRD-1 methyl-accepting chemotaxis sensory transducer YP_005931338.1 3960535 D 931281 CDS YP_005931339.1 386013062 12521717 complement(3962307..3963191) 1 NC_017530.1 Pseudouridine synthase 3963191 12521717 PPUBIRD1_3541 Pseudomonas putida BIRD-1 Pseudouridine synthase YP_005931339.1 3962307 R 931281 CDS YP_005931340.1 386013063 12521718 complement(3963243..3963551) 1 NC_017530.1 hypothetical protein 3963551 12521718 PPUBIRD1_3542 Pseudomonas putida BIRD-1 hypothetical protein YP_005931340.1 3963243 R 931281 CDS YP_005931341.1 386013064 12521719 complement(3963617..3964048) 1 NC_017530.1 peptidase M15A 3964048 12521719 PPUBIRD1_3543 Pseudomonas putida BIRD-1 peptidase M15A YP_005931341.1 3963617 R 931281 CDS YP_005931342.1 386013065 12521720 complement(3964157..3964396) 1 NC_017530.1 Glutaredoxin 2 3964396 12521720 PPUBIRD1_3544 Pseudomonas putida BIRD-1 Glutaredoxin 2 YP_005931342.1 3964157 R 931281 CDS YP_005931343.1 386013066 12521721 complement(3964470..3965678) 1 NC_017530.1 Rh family protein/ammonium transporter 3965678 12521721 PPUBIRD1_3545 Pseudomonas putida BIRD-1 Rh family protein/ammonium transporter YP_005931343.1 3964470 R 931281 CDS YP_005931344.1 386013067 12521722 3965991..3966305 1 NC_017530.1 hypothetical protein 3966305 12521722 PPUBIRD1_3546 Pseudomonas putida BIRD-1 hypothetical protein YP_005931344.1 3965991 D 931281 CDS YP_005931345.1 386013068 12521723 3966315..3966689 1 NC_017530.1 hypothetical protein 3966689 12521723 PPUBIRD1_3547 Pseudomonas putida BIRD-1 hypothetical protein YP_005931345.1 3966315 D 931281 CDS YP_005931346.1 386013069 12521724 3966686..3967015 1 NC_017530.1 hypothetical protein 3967015 12521724 PPUBIRD1_3548 Pseudomonas putida BIRD-1 hypothetical protein YP_005931346.1 3966686 D 931281 CDS YP_005931347.1 386013070 12521725 3967164..3967682 1 NC_017530.1 Deoxyguanosinetriphosphate triphosphohydrolase-like protein 3967682 12521725 PPUBIRD1_3549 Pseudomonas putida BIRD-1 Deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_005931347.1 3967164 D 931281 CDS YP_005931348.1 386013071 12521726 3967871..3968494 1 NC_017530.1 Deoxyguanosinetriphosphate triphosphohydrolase-like protein 3968494 12521726 PPUBIRD1_3550 Pseudomonas putida BIRD-1 Deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_005931348.1 3967871 D 931281 CDS YP_005931349.1 386013072 12521727 3968777..3969394 1 NC_017530.1 Two component LuxR family transcriptional regulator 3969394 12521727 PPUBIRD1_3551 Pseudomonas putida BIRD-1 Two component LuxR family transcriptional regulator YP_005931349.1 3968777 D 931281 CDS YP_005931350.1 386013073 12521728 3969403..3973035 1 NC_017530.1 Virulence sensor protein bvgS 3973035 12521728 PPUBIRD1_3552 Pseudomonas putida BIRD-1 Virulence sensor protein bvgS YP_005931350.1 3969403 D 931281 CDS YP_005931351.1 386013074 12521729 3973077..3973421 1 NC_017530.1 hypothetical protein 3973421 12521729 PPUBIRD1_3553 Pseudomonas putida BIRD-1 hypothetical protein YP_005931351.1 3973077 D 931281 CDS YP_005931352.1 386013075 12521730 3973622..3975076 1 NC_017530.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 3975076 12521730 PPUBIRD1_3554 Pseudomonas putida BIRD-1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YP_005931352.1 3973622 D 931281 CDS YP_005931353.1 386013076 12521731 complement(3975182..3977506) 1 NC_017530.1 Diguanylate cyclase with PAS/PAC sensor 3977506 12521731 PPUBIRD1_3555 Pseudomonas putida BIRD-1 Diguanylate cyclase with PAS/PAC sensor YP_005931353.1 3975182 R 931281 CDS YP_005931354.1 386013077 12521732 complement(3977667..3979859) 1 NC_017530.1 Ribosomal RNA large subunit methyltransferase L; RlmL 3979859 rlmL 12521732 rlmL Pseudomonas putida BIRD-1 RlmL YP_005931354.1 3977667 R 931281 CDS YP_005931355.1 386013078 12521733 complement(3980784..3981806) 1 NC_017530.1 Dihydroorotate dehydrogenase; protein PyrD 3981806 pyrD 12521733 pyrD Pseudomonas putida BIRD-1 protein PyrD YP_005931355.1 3980784 R 931281 CDS YP_005931356.1 386013079 12521734 3981944..3983158 1 NC_017530.1 Nitrate-binding protein NasS, putative 3983158 12521734 PPUBIRD1_3558 Pseudomonas putida BIRD-1 Nitrate-binding protein NasS, putative YP_005931356.1 3981944 D 931281 CDS YP_005931357.1 386013080 12521735 3983170..3983745 1 NC_017530.1 response regulator receiver and ANTAR domain protein; NasT 3983745 nasT 12521735 nasT Pseudomonas putida BIRD-1 NasT YP_005931357.1 3983170 D 931281 CDS YP_005931358.1 386013081 12521736 3983930..3985141 1 NC_017530.1 Nitrite transporter 3985141 12521736 PPUBIRD1_3560 Pseudomonas putida BIRD-1 Nitrite transporter YP_005931358.1 3983930 D 931281 CDS YP_005931359.1 386013082 12521737 3985151..3986821 1 NC_017530.1 Serine/threonine-protein kinase, putative 3986821 12521737 PPUBIRD1_3561 Pseudomonas putida BIRD-1 Serine/threonine-protein kinase, putative YP_005931359.1 3985151 D 931281 CDS YP_005931360.1 386013083 12521738 3986849..3987589 1 NC_017530.1 Uroporphyrin-III C-methyltransferase 3987589 12521738 PPUBIRD1_3562 Pseudomonas putida BIRD-1 Uroporphyrin-III C-methyltransferase YP_005931360.1 3986849 D 931281 CDS YP_005931361.1 386013084 12521739 complement(3987676..3988710) 1 NC_017530.1 OmpF family protein; OprF 3988710 oprF 12521739 oprF Pseudomonas putida BIRD-1 OprF YP_005931361.1 3987676 R 931281 CDS YP_005931362.1 386013085 12521740 complement(3988822..3989388) 1 NC_017530.1 RNA polymerase sigma factor SigX; SigX 3989388 sigX 12521740 sigX Pseudomonas putida BIRD-1 SigX YP_005931362.1 3988822 R 931281 CDS YP_005931363.1 386013086 12521741 complement(3989502..3990326) 1 NC_017530.1 TM helix repeat-containing protein; CmpX 3990326 cmpX 12521741 cmpX Pseudomonas putida BIRD-1 CmpX YP_005931363.1 3989502 R 931281 CDS YP_005931364.1 386013087 12521742 complement(3990329..3990601) 1 NC_017530.1 hypothetical protein 3990601 12521742 PPUBIRD1_3566 Pseudomonas putida BIRD-1 hypothetical protein YP_005931364.1 3990329 R 931281 CDS YP_005931365.1 386013088 12521743 complement(3990689..3991684) 1 NC_017530.1 cmaX protein; CmaX 3991684 cmaX 12521743 cmaX Pseudomonas putida BIRD-1 CmaX YP_005931365.1 3990689 R 931281 CDS YP_005931366.1 386013089 12521744 complement(3991712..3992203) 1 NC_017530.1 Regulator of ribonuclease activity A 3992203 12521744 PPUBIRD1_3568 Pseudomonas putida BIRD-1 Regulator of ribonuclease activity A YP_005931366.1 3991712 R 931281 CDS YP_005931367.1 386013090 12521745 complement(3992486..3993478) 1 NC_017530.1 Lipase, putative 3993478 12521745 PPUBIRD1_3570 Pseudomonas putida BIRD-1 Lipase, putative YP_005931367.1 3992486 R 931281 CDS YP_005931368.1 386013091 12521746 complement(3993582..3995903) 1 NC_017530.1 Phosphoenolpyruvate synthase; PpsA 3995903 ppsA 12521746 ppsA Pseudomonas putida BIRD-1 PpsA YP_005931368.1 3993582 R 931281 CDS YP_005931369.1 386013092 12521747 3995904..3996017 1 NC_017530.1 hypothetical protein 3996017 12521747 PPUBIRD1_3572 Pseudomonas putida BIRD-1 hypothetical protein YP_005931369.1 3995904 D 931281 CDS YP_005931370.1 386013093 12521748 3996149..3996967 1 NC_017530.1 Putative phosphotransferase 3996967 12521748 PPUBIRD1_3573 Pseudomonas putida BIRD-1 Putative phosphotransferase YP_005931370.1 3996149 D 931281 CDS YP_005931371.1 386013094 12521749 complement(3997227..4002092) 1 NC_017530.1 NAD-glutamate dehydrogenase 4002092 12521749 PPUBIRD1_3574 Pseudomonas putida BIRD-1 NAD-glutamate dehydrogenase YP_005931371.1 3997227 R 931281 CDS YP_005931372.1 386013095 12521750 4002368..4002721 1 NC_017530.1 hypothetical protein 4002721 12521750 PPUBIRD1_3575 Pseudomonas putida BIRD-1 hypothetical protein YP_005931372.1 4002368 D 931281 CDS YP_005931373.1 386013096 12521751 complement(4002761..4003666) 1 NC_017530.1 DNA-binding transcriptional regulator LysR 4003666 12521751 PPUBIRD1_3576 Pseudomonas putida BIRD-1 DNA-binding transcriptional regulator LysR YP_005931373.1 4002761 R 931281 CDS YP_005931374.1 386013097 12521752 4003790..4005022 1 NC_017530.1 diaminopimelate decarboxylase; protein LysA 4005022 lysA 12521752 lysA Pseudomonas putida BIRD-1 protein LysA YP_005931374.1 4003790 D 931281 CDS YP_005931375.1 386013098 12521753 4005250..4005750 1 NC_017530.1 ECF subfamily RNA polymerase sigma-24 factor 4005750 12521753 PPUBIRD1_3578 Pseudomonas putida BIRD-1 ECF subfamily RNA polymerase sigma-24 factor YP_005931375.1 4005250 D 931281 CDS YP_005931376.1 386013099 12521754 4005756..4006691 1 NC_017530.1 Anti-FecI sigma factor, FecR 4006691 12521754 PPUBIRD1_3579 Pseudomonas putida BIRD-1 Anti-FecI sigma factor, FecR YP_005931376.1 4005756 D 931281 CDS YP_005931377.1 386013100 12521755 4006802..4009288 1 NC_017530.1 Ferric-pseudobactin M114 receptor pbuA 4009288 12521755 PPUBIRD1_3580 Pseudomonas putida BIRD-1 Ferric-pseudobactin M114 receptor pbuA YP_005931377.1 4006802 D 931281 CDS YP_005931378.1 386013101 12521756 complement(4009521..4010492) 1 NC_017530.1 LysR family transcriptional regulator 4010492 12521756 PPUBIRD1_3581 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931378.1 4009521 R 931281 CDS YP_005931379.1 386013102 12521757 4010717..4011160 1 NC_017530.1 Acetyltransferase 4011160 12521757 PPUBIRD1_3582 Pseudomonas putida BIRD-1 Acetyltransferase YP_005931379.1 4010717 D 931281 CDS YP_005931380.1 386013103 12521758 4011380..4012090 1 NC_017530.1 AraC family transcriptional regulator 4012090 12521758 PPUBIRD1_3583 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005931380.1 4011380 D 931281 CDS YP_005931381.1 386013104 12521759 4012332..4013612 1 NC_017530.1 Multidrug efflux MFS outer membrane protein, putative 4013612 12521759 PPUBIRD1_3584 Pseudomonas putida BIRD-1 Multidrug efflux MFS outer membrane protein, putative YP_005931381.1 4012332 D 931281 CDS YP_005931382.1 386013105 12521760 4013819..4014964 1 NC_017530.1 Multidrug efflux MFS membrane fusion protein, putative 4014964 12521760 PPUBIRD1_3585 Pseudomonas putida BIRD-1 Multidrug efflux MFS membrane fusion protein, putative YP_005931382.1 4013819 D 931281 CDS YP_005931383.1 386013106 12521761 4014954..4016468 1 NC_017530.1 EmrB/QacA family drug resistance transporter 4016468 12521761 PPUBIRD1_3586 Pseudomonas putida BIRD-1 EmrB/QacA family drug resistance transporter YP_005931383.1 4014954 D 931281 CDS YP_005931384.1 386013107 12521762 4016562..4017299 1 NC_017530.1 GntR family transcriptional regulator 4017299 12521762 PPUBIRD1_3587 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005931384.1 4016562 D 931281 CDS YP_005931385.1 386013108 12521763 complement(4017353..4020436) 1 NC_017530.1 hypothetical protein 4020436 12521763 PPUBIRD1_3588 Pseudomonas putida BIRD-1 hypothetical protein YP_005931385.1 4017353 R 931281 CDS YP_005931386.1 386013109 12521764 complement(4020433..4021530) 1 NC_017530.1 RND family efflux transporter MFP subunit 4021530 12521764 PPUBIRD1_3589 Pseudomonas putida BIRD-1 RND family efflux transporter MFP subunit YP_005931386.1 4020433 R 931281 CDS YP_005931387.1 386013110 12521765 4021645..4022070 1 NC_017530.1 transcriptional regulator SoxR; SoxR 4022070 soxR 12521765 soxR Pseudomonas putida BIRD-1 SoxR YP_005931387.1 4021645 D 931281 CDS YP_005931388.1 386013111 12521766 4022217..4022465 1 NC_017530.1 hypothetical protein 4022465 12521766 PPUBIRD1_3591 Pseudomonas putida BIRD-1 hypothetical protein YP_005931388.1 4022217 D 931281 CDS YP_005931389.1 386013112 12521767 complement(4022518..4023771) 1 NC_017530.1 Outer membrane porin 4023771 12521767 PPUBIRD1_3592 Pseudomonas putida BIRD-1 Outer membrane porin YP_005931389.1 4022518 R 931281 CDS YP_005931390.1 386013113 12521768 complement(4023835..4025139) 1 NC_017530.1 CitMHS family citrate/H+ symporter 4025139 12521768 PPUBIRD1_3593 Pseudomonas putida BIRD-1 CitMHS family citrate/H+ symporter YP_005931390.1 4023835 R 931281 CDS YP_005931391.1 386013114 12521769 complement(4025254..4026573) 1 NC_017530.1 sodium:dicarboxylate symporter; DctM 4026573 dctM 12521769 dctM Pseudomonas putida BIRD-1 DctM YP_005931391.1 4025254 R 931281 CDS YP_005931392.1 386013115 12521770 complement(4026633..4027745) 1 NC_017530.1 hypothetical protein 4027745 12521770 PPUBIRD1_3595 Pseudomonas putida BIRD-1 hypothetical protein YP_005931392.1 4026633 R 931281 CDS YP_005931393.1 386013116 12521771 4027859..4028752 1 NC_017530.1 LysR family transcriptional regulator 4028752 12521771 PPUBIRD1_3596 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931393.1 4027859 D 931281 CDS YP_005931394.1 386013117 12521772 complement(4028772..4029068) 1 NC_017530.1 hypothetical protein 4029068 12521772 PPUBIRD1_3597 Pseudomonas putida BIRD-1 hypothetical protein YP_005931394.1 4028772 R 931281 CDS YP_005931395.1 386013118 12521773 4029465..4031588 1 NC_017530.1 HAD family hydrolase 4031588 12521773 PPUBIRD1_3598 Pseudomonas putida BIRD-1 HAD family hydrolase YP_005931395.1 4029465 D 931281 CDS YP_005931396.1 386013119 12521774 complement(4031668..4032852) 1 NC_017530.1 acetyl-CoA acetyltransferase; protein AtoB 4032852 atoB 12521774 atoB Pseudomonas putida BIRD-1 protein AtoB YP_005931396.1 4031668 R 931281 CDS YP_005931397.1 386013120 12521775 complement(4032849..4033301) 1 NC_017530.1 Thioesterase superfamily protein 4033301 12521775 PPUBIRD1_3600 Pseudomonas putida BIRD-1 Thioesterase superfamily protein YP_005931397.1 4032849 R 931281 CDS YP_005931398.1 386013121 12521776 complement(4033301..4034464) 1 NC_017530.1 Alcohol dehydrogenase, iron-containing 4034464 12521776 PPUBIRD1_3601 Pseudomonas putida BIRD-1 Alcohol dehydrogenase, iron-containing YP_005931398.1 4033301 R 931281 CDS YP_005931399.1 386013122 12521777 complement(4034498..4036273) 1 NC_017530.1 Acyl-CoA dehydrogenase domain-containing protein 4036273 12521777 PPUBIRD1_3602 Pseudomonas putida BIRD-1 Acyl-CoA dehydrogenase domain-containing protein YP_005931399.1 4034498 R 931281 CDS YP_005931400.1 386013123 12521778 complement(4036270..4037508) 1 NC_017530.1 3-hydroxybutyryl-CoA epimerase; FadB_4 4037508 fadB_4 12521778 fadB_4 Pseudomonas putida BIRD-1 FadB_4 YP_005931400.1 4036270 R 931281 CDS YP_005931401.1 386013124 12521779 4037593..4038516 1 NC_017530.1 LysR family transcriptional regulator 4038516 12521779 PPUBIRD1_3604 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931401.1 4037593 D 931281 CDS YP_005931402.1 386013125 12521780 4038618..4040579 1 NC_017530.1 Beta-lactamase domain-containing protein 4040579 12521780 PPUBIRD1_3605 Pseudomonas putida BIRD-1 Beta-lactamase domain-containing protein YP_005931402.1 4038618 D 931281 CDS YP_005931403.1 386013126 12521781 complement(4040608..4040901) 1 NC_017530.1 hypothetical protein 4040901 12521781 PPUBIRD1_3606 Pseudomonas putida BIRD-1 hypothetical protein YP_005931403.1 4040608 R 931281 CDS YP_005931404.1 386013127 12521782 complement(4040894..4041280) 1 NC_017530.1 hypothetical protein 4041280 12521782 PPUBIRD1_3607 Pseudomonas putida BIRD-1 hypothetical protein YP_005931404.1 4040894 R 931281 CDS YP_005931405.1 386013128 12521783 complement(4041280..4042590) 1 NC_017530.1 hypothetical protein 4042590 12521783 PPUBIRD1_3608 Pseudomonas putida BIRD-1 hypothetical protein YP_005931405.1 4041280 R 931281 CDS YP_005931406.1 386013129 12521784 complement(4042613..4044466) 1 NC_017530.1 hypothetical protein 4044466 12521784 PPUBIRD1_3609 Pseudomonas putida BIRD-1 hypothetical protein YP_005931406.1 4042613 R 931281 CDS YP_005931407.1 386013130 12521785 4044681..4045625 1 NC_017530.1 LysR family transcriptional regulator 4045625 12521785 PPUBIRD1_3610 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931407.1 4044681 D 931281 CDS YP_005931408.1 386013131 12521786 complement(4045638..4046891) 1 NC_017530.1 Major facilitator family transporter 4046891 12521786 PPUBIRD1_3611 Pseudomonas putida BIRD-1 Major facilitator family transporter YP_005931408.1 4045638 R 931281 CDS YP_005931409.1 386013132 12521787 complement(4046996..4048162) 1 NC_017530.1 Acyl-CoA dehydrogenase, putative 4048162 12521787 PPUBIRD1_3612 Pseudomonas putida BIRD-1 Acyl-CoA dehydrogenase, putative YP_005931409.1 4046996 R 931281 CDS YP_005931410.1 386013133 12521788 complement(4048177..4049724) 1 NC_017530.1 Long-chain-fatty-acid--CoA ligase, putative 4049724 12521788 PPUBIRD1_3613 Pseudomonas putida BIRD-1 Long-chain-fatty-acid--CoA ligase, putative YP_005931410.1 4048177 R 931281 CDS YP_005931411.1 386013134 12521789 4049970..4050752 1 NC_017530.1 hypothetical protein 4050752 12521789 PPUBIRD1_3614 Pseudomonas putida BIRD-1 hypothetical protein YP_005931411.1 4049970 D 931281 CDS YP_005931412.1 386013135 12521790 4050797..4051684 1 NC_017530.1 Dihydrodipicolinate synthetase 4051684 12521790 PPUBIRD1_3615 Pseudomonas putida BIRD-1 Dihydrodipicolinate synthetase YP_005931412.1 4050797 D 931281 CDS YP_005931413.1 386013136 12521791 4051834..4053048 1 NC_017530.1 benzoate transporter; BenE_2 4053048 benE_2 12521791 benE_2 Pseudomonas putida BIRD-1 BenE_2 YP_005931413.1 4051834 D 931281 CDS YP_005931414.1 386013137 12521792 4053108..4054325 1 NC_017530.1 Major facilitator superfamily MFS_1 4054325 12521792 PPUBIRD1_3617 Pseudomonas putida BIRD-1 Major facilitator superfamily MFS_1 YP_005931414.1 4053108 D 931281 CDS YP_005931415.1 386013138 12521793 complement(4054361..4055671) 1 NC_017530.1 hypothetical protein 4055671 12521793 PPUBIRD1_3618 Pseudomonas putida BIRD-1 hypothetical protein YP_005931415.1 4054361 R 931281 CDS YP_005931416.1 386013139 12521794 4055900..4056859 1 NC_017530.1 ATPase 4056859 12521794 PPUBIRD1_3620 Pseudomonas putida BIRD-1 ATPase YP_005931416.1 4055900 D 931281 CDS YP_005931417.1 386013140 12521795 4056864..4057808 1 NC_017530.1 hypothetical protein 4057808 12521795 PPUBIRD1_3621 Pseudomonas putida BIRD-1 hypothetical protein YP_005931417.1 4056864 D 931281 CDS YP_005931418.1 386013141 12521796 4057805..4058299 1 NC_017530.1 hypothetical protein 4058299 12521796 PPUBIRD1_3622 Pseudomonas putida BIRD-1 hypothetical protein YP_005931418.1 4057805 D 931281 CDS YP_005931419.1 386013142 12521797 4058292..4059368 1 NC_017530.1 Von Willebrand factor type A domain-containing protein 4059368 12521797 PPUBIRD1_3623 Pseudomonas putida BIRD-1 Von Willebrand factor type A domain-containing protein YP_005931419.1 4058292 D 931281 CDS YP_005931420.1 386013143 12521798 4059365..4061083 1 NC_017530.1 hypothetical protein 4061083 12521798 PPUBIRD1_3624 Pseudomonas putida BIRD-1 hypothetical protein YP_005931420.1 4059365 D 931281 CDS YP_005931421.1 386013144 12521799 4061080..4062711 1 NC_017530.1 hypothetical protein 4062711 12521799 PPUBIRD1_3625 Pseudomonas putida BIRD-1 hypothetical protein YP_005931421.1 4061080 D 931281 CDS YP_005931422.1 386013145 12521800 4062908..4064146 1 NC_017530.1 Nuclease SbcCD, D subunit 4064146 12521800 PPUBIRD1_3626 Pseudomonas putida BIRD-1 Nuclease SbcCD, D subunit YP_005931422.1 4062908 D 931281 CDS YP_005931423.1 386013146 12521801 4064143..4067787 1 NC_017530.1 SMC domain protein; SbcC 4067787 sbcC 12521801 sbcC Pseudomonas putida BIRD-1 SbcC YP_005931423.1 4064143 D 931281 CDS YP_005931424.1 386013147 12521802 4067784..4068377 1 NC_017530.1 glutathione S-transferase 4068377 12521802 PPUBIRD1_3628 Pseudomonas putida BIRD-1 glutathione S-transferase YP_005931424.1 4067784 D 931281 CDS YP_005931425.1 386013148 12521803 complement(4068825..4069916) 1 NC_017530.1 hypothetical protein 4069916 12521803 PPUBIRD1_3630 Pseudomonas putida BIRD-1 hypothetical protein YP_005931425.1 4068825 R 931281 CDS YP_005931426.1 386013149 12521804 complement(4069921..4070211) 1 NC_017530.1 hypothetical protein 4070211 12521804 PPUBIRD1_3631 Pseudomonas putida BIRD-1 hypothetical protein YP_005931426.1 4069921 R 931281 CDS YP_005931427.1 386013150 12521805 complement(4070277..4072652) 1 NC_017530.1 RND efflux transporter 4072652 12521805 PPUBIRD1_3632 Pseudomonas putida BIRD-1 RND efflux transporter YP_005931427.1 4070277 R 931281 CDS YP_005931428.1 386013151 12521806 complement(4072673..4073653) 1 NC_017530.1 BNR repeat-containing protein 4073653 12521806 PPUBIRD1_3633 Pseudomonas putida BIRD-1 BNR repeat-containing protein YP_005931428.1 4072673 R 931281 CDS YP_005931429.1 386013152 12521807 complement(4073985..4076642) 1 NC_017530.1 Aminopeptidase N; PepN 4076642 pepN 12521807 pepN Pseudomonas putida BIRD-1 PepN YP_005931429.1 4073985 R 931281 CDS YP_005931430.1 386013153 12521808 complement(4076656..4077453) 1 NC_017530.1 hypothetical protein 4077453 12521808 PPUBIRD1_3635 Pseudomonas putida BIRD-1 hypothetical protein YP_005931430.1 4076656 R 931281 CDS YP_005931431.1 386013154 12521809 complement(4077483..4077743) 1 NC_017530.1 hypothetical protein 4077743 12521809 PPUBIRD1_3636 Pseudomonas putida BIRD-1 hypothetical protein YP_005931431.1 4077483 R 931281 CDS YP_005931432.1 386013155 12521810 complement(4077757..4078644) 1 NC_017530.1 rhomboid family protein 4078644 12521810 PPUBIRD1_3637 Pseudomonas putida BIRD-1 rhomboid family protein YP_005931432.1 4077757 R 931281 CDS YP_005931433.1 386013156 12521811 complement(4078641..4079612) 1 NC_017530.1 Metallophosphoesterase 4079612 12521811 PPUBIRD1_3638 Pseudomonas putida BIRD-1 Metallophosphoesterase YP_005931433.1 4078641 R 931281 CDS YP_005931434.1 386013157 12521812 complement(4079612..4080502) 1 NC_017530.1 Probable inorganic polyphosphate/ATP-NAD kinase; protein PpnK 4080502 ppnK 12521812 ppnK Pseudomonas putida BIRD-1 protein PpnK YP_005931434.1 4079612 R 931281 CDS YP_005931435.1 386013158 12521813 4080546..4081523 1 NC_017530.1 hypothetical protein 4081523 12521813 PPUBIRD1_3640 Pseudomonas putida BIRD-1 hypothetical protein YP_005931435.1 4080546 D 931281 CDS YP_005931436.1 386013159 12521814 4081686..4082231 1 NC_017530.1 Cytochrome B561 4082231 12521814 PPUBIRD1_3641 Pseudomonas putida BIRD-1 Cytochrome B561 YP_005931436.1 4081686 D 931281 CDS YP_005931437.1 386013160 12521815 complement(4082222..4083115) 1 NC_017530.1 1-aminocyclopropane-1-carboxylate deaminase 4083115 12521815 PPUBIRD1_3642 Pseudomonas putida BIRD-1 1-aminocyclopropane-1-carboxylate deaminase YP_005931437.1 4082222 R 931281 CDS YP_005931438.1 386013161 12521816 complement(4083424..4085460) 1 NC_017530.1 2,4-dienoyl-CoA reductase 4085460 12521816 PPUBIRD1_3643 Pseudomonas putida BIRD-1 2,4-dienoyl-CoA reductase YP_005931438.1 4083424 R 931281 CDS YP_005931439.1 386013162 12521817 complement(4085724..4086431) 1 NC_017530.1 AraC-like transcriptional regulator 4086431 12521817 PPUBIRD1_3644 Pseudomonas putida BIRD-1 AraC-like transcriptional regulator YP_005931439.1 4085724 R 931281 CDS YP_005931440.1 386013163 12521818 complement(4087301..4088224) 1 NC_017530.1 Alcohol dehydrogenase 4088224 12521818 PPUBIRD1_3645 Pseudomonas putida BIRD-1 Alcohol dehydrogenase YP_005931440.1 4087301 R 931281 CDS YP_005931441.1 386013164 12521819 complement(4088283..4088438) 1 NC_017530.1 DoxX family protein 4088438 12521819 PPUBIRD1_3646 Pseudomonas putida BIRD-1 DoxX family protein YP_005931441.1 4088283 R 931281 CDS YP_005931442.1 386013165 12521820 4088734..4089471 1 NC_017530.1 short-chain dehydrogenase 4089471 12521820 PPUBIRD1_3647 Pseudomonas putida BIRD-1 short-chain dehydrogenase YP_005931442.1 4088734 D 931281 CDS YP_005931443.1 386013166 12521821 4089501..4089755 1 NC_017530.1 hypothetical protein 4089755 12521821 PPUBIRD1_3648 Pseudomonas putida BIRD-1 hypothetical protein YP_005931443.1 4089501 D 931281 CDS YP_005931444.1 386013167 12521822 4089975..4090874 1 NC_017530.1 Helix-turn-helix domain-containing protein 4090874 12521822 PPUBIRD1_3649 Pseudomonas putida BIRD-1 Helix-turn-helix domain-containing protein YP_005931444.1 4089975 D 931281 CDS YP_005931445.1 386013168 12521823 complement(4091024..4091290) 1 NC_017530.1 hypothetical protein 4091290 12521823 PPUBIRD1_3650 Pseudomonas putida BIRD-1 hypothetical protein YP_005931445.1 4091024 R 931281 CDS YP_005931446.1 386013169 12521824 complement(4091344..4092249) 1 NC_017530.1 LysR family transcriptional regulator 4092249 12521824 PPUBIRD1_3651 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931446.1 4091344 R 931281 CDS YP_005931447.1 386013170 12521825 4092547..4093311 1 NC_017530.1 short-chain dehydrogenase 4093311 12521825 PPUBIRD1_3652 Pseudomonas putida BIRD-1 short-chain dehydrogenase YP_005931447.1 4092547 D 931281 CDS YP_005931448.1 386013171 12521826 4093343..4093630 1 NC_017530.1 antibiotic biosynthesis monooxygenase 4093630 12521826 PPUBIRD1_3653 Pseudomonas putida BIRD-1 antibiotic biosynthesis monooxygenase YP_005931448.1 4093343 D 931281 CDS YP_005931449.1 386013172 12521827 4093674..4094513 1 NC_017530.1 short-chain dehydrogenase 4094513 12521827 PPUBIRD1_3654 Pseudomonas putida BIRD-1 short-chain dehydrogenase YP_005931449.1 4093674 D 931281 CDS YP_005931450.1 386013173 12521828 complement(4094643..4094996) 1 NC_017530.1 hypothetical protein 4094996 12521828 PPUBIRD1_3655 Pseudomonas putida BIRD-1 hypothetical protein YP_005931450.1 4094643 R 931281 CDS YP_005931451.1 386013174 12521829 4095185..4095889 1 NC_017530.1 Pili assembly chaperone 4095889 12521829 PPUBIRD1_3656 Pseudomonas putida BIRD-1 Pili assembly chaperone YP_005931451.1 4095185 D 931281 CDS YP_005931452.1 386013175 12521830 4095915..4096904 1 NC_017530.1 hypothetical protein 4096904 12521830 PPUBIRD1_3657 Pseudomonas putida BIRD-1 hypothetical protein YP_005931452.1 4095915 D 931281 CDS YP_005931453.1 386013176 12521831 4096974..4099781 1 NC_017530.1 Histidine kinase 4099781 12521831 PPUBIRD1_3658 Pseudomonas putida BIRD-1 Histidine kinase YP_005931453.1 4096974 D 931281 CDS YP_005931454.1 386013177 12521832 4099778..4100971 1 NC_017530.1 Response regulator receiver modulated diguanylate phosphodiesterase 4100971 12521832 PPUBIRD1_3659 Pseudomonas putida BIRD-1 Response regulator receiver modulated diguanylate phosphodiesterase YP_005931454.1 4099778 D 931281 CDS YP_005931455.1 386013178 12521833 4101056..4104268 1 NC_017530.1 Multi-sensor hybrid histidine kinase 4104268 12521833 PPUBIRD1_3660 Pseudomonas putida BIRD-1 Multi-sensor hybrid histidine kinase YP_005931455.1 4101056 D 931281 CDS YP_005931456.1 386013179 12521834 4104338..4104985 1 NC_017530.1 Two component LuxR family transcriptional regulator 4104985 12521834 PPUBIRD1_3661 Pseudomonas putida BIRD-1 Two component LuxR family transcriptional regulator YP_005931456.1 4104338 D 931281 CDS YP_005931457.1 386013180 12521835 4105103..4105702 1 NC_017530.1 Fimbrial protein-like protein 4105702 12521835 PPUBIRD1_3662 Pseudomonas putida BIRD-1 Fimbrial protein-like protein YP_005931457.1 4105103 D 931281 CDS YP_005931458.1 386013181 12521836 4105775..4106521 1 NC_017530.1 Pili assembly chaperone 4106521 12521836 PPUBIRD1_3663 Pseudomonas putida BIRD-1 Pili assembly chaperone YP_005931458.1 4105775 D 931281 CDS YP_005931459.1 386013182 12521837 4106605..4109160 1 NC_017530.1 Fimbrial biogenesis outer membrane usher protein 4109160 12521837 PPUBIRD1_3664 Pseudomonas putida BIRD-1 Fimbrial biogenesis outer membrane usher protein YP_005931459.1 4106605 D 931281 CDS YP_005931460.1 386013183 12521838 4109333..4110451 1 NC_017530.1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 4110451 12521838 PPUBIRD1_3665 Pseudomonas putida BIRD-1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_005931460.1 4109333 D 931281 CDS YP_005931461.1 386013184 12521839 4110471..4111496 1 NC_017530.1 AraC family transcriptional regulator 4111496 12521839 PPUBIRD1_3666 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005931461.1 4110471 D 931281 CDS YP_005931462.1 386013185 12521840 complement(4111805..4112689) 1 NC_017530.1 hypothetical protein 4112689 12521840 PPUBIRD1_3667 Pseudomonas putida BIRD-1 hypothetical protein YP_005931462.1 4111805 R 931281 CDS YP_005931463.1 386013186 12521845 complement(4113736..4114509) 1 NC_017530.1 Oxidoreductase 4114509 12521845 PPUBIRD1_3668 Pseudomonas putida BIRD-1 Oxidoreductase YP_005931463.1 4113736 R 931281 CDS YP_005931464.1 386013187 12521846 complement(4114506..4115717) 1 NC_017530.1 O-succinylhomoserine sulfhydrylase 4115717 12521846 PPUBIRD1_3669 Pseudomonas putida BIRD-1 O-succinylhomoserine sulfhydrylase YP_005931464.1 4114506 R 931281 CDS YP_005931465.1 386013188 12521847 complement(4115734..4117239) 1 NC_017530.1 Amidophosphoribosyltransferase; protein PurF 4117239 purF 12521847 purF Pseudomonas putida BIRD-1 protein PurF YP_005931465.1 4115734 R 931281 CDS YP_005931466.1 386013189 12521848 complement(4117282..4117839) 1 NC_017530.1 colicin V production protein 4117839 12521848 PPUBIRD1_3671 Pseudomonas putida BIRD-1 colicin V production protein YP_005931466.1 4117282 R 931281 CDS YP_005931467.1 386013190 12521849 complement(4118036..4118680) 1 NC_017530.1 Sporulation domain-containing protein 4118680 12521849 PPUBIRD1_3672 Pseudomonas putida BIRD-1 Sporulation domain-containing protein YP_005931467.1 4118036 R 931281 CDS YP_005931468.1 386013191 12521850 complement(4118664..4119974) 1 NC_017530.1 FolC bifunctional protein; protein FolC 4119974 folC 12521850 folC Pseudomonas putida BIRD-1 protein FolC YP_005931468.1 4118664 R 931281 CDS YP_005931469.1 386013192 12521851 complement(4119971..4120864) 1 NC_017530.1 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta 4120864 12521851 PPUBIRD1_3674 Pseudomonas putida BIRD-1 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta YP_005931469.1 4119971 R 931281 CDS YP_005931470.1 386013193 12521852 complement(4121081..4121701) 1 NC_017530.1 N-(5'-phosphoribosyl)anthranilate isomerase; TrpF 4121701 trpF 12521852 trpF Pseudomonas putida BIRD-1 TrpF YP_005931470.1 4121081 R 931281 CDS YP_005931471.1 386013194 12521853 complement(4121763..4122617) 1 NC_017530.1 tRNA pseudouridine synthase A; TruA 4122617 truA 12521853 truA Pseudomonas putida BIRD-1 TruA YP_005931471.1 4121763 R 931281 CDS YP_005931472.1 386013195 12521854 complement(4122818..4125553) 1 NC_017530.1 Peptidoglycan-binding LysM 4125553 12521854 PPUBIRD1_3677 Pseudomonas putida BIRD-1 Peptidoglycan-binding LysM YP_005931472.1 4122818 R 931281 CDS YP_005931473.1 386013196 12521855 complement(4125625..4126629) 1 NC_017530.1 Aspartate-semialdehyde dehydrogenase 4126629 12521855 PPUBIRD1_3678 Pseudomonas putida BIRD-1 Aspartate-semialdehyde dehydrogenase YP_005931473.1 4125625 R 931281 CDS YP_005931474.1 386013197 12521856 complement(4127012..4128124) 1 NC_017530.1 Aspartate-semialdehyde dehydrogenase; protein Asd 4128124 asd 12521856 asd Pseudomonas putida BIRD-1 protein Asd YP_005931474.1 4127012 R 931281 CDS YP_005931475.1 386013198 12521857 complement(4128188..4129270) 1 NC_017530.1 3-isopropylmalate dehydrogenase; protein LeuB 4129270 leuB 12521857 leuB Pseudomonas putida BIRD-1 protein LeuB YP_005931475.1 4128188 R 931281 CDS YP_005931476.1 386013199 12521858 complement(4129325..4130089) 1 NC_017530.1 UbiE/COQ5 family methyltransferase 4130089 12521858 PPUBIRD1_3681 Pseudomonas putida BIRD-1 UbiE/COQ5 family methyltransferase YP_005931476.1 4129325 R 931281 CDS YP_005931477.1 386013200 12521859 complement(4130208..4130852) 1 NC_017530.1 3-isopropylmalate dehydratase small subunit; LeuD 4130852 leuD 12521859 leuD Pseudomonas putida BIRD-1 LeuD YP_005931477.1 4130208 R 931281 CDS YP_005931478.1 386013201 12521860 complement(4130849..4132282) 1 NC_017530.1 3-isopropylmalate dehydratase large subunit; protein LeuC 4132282 leuC 12521860 leuC Pseudomonas putida BIRD-1 protein LeuC YP_005931478.1 4130849 R 931281 CDS YP_005931479.1 386013202 12521861 4132414..4133292 1 NC_017530.1 LysR family transcriptional regulator 4133292 12521861 PPUBIRD1_3684 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931479.1 4132414 D 931281 CDS YP_005931480.1 386013203 12521862 4133354..4136650 1 NC_017530.1 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 4136650 12521862 PPUBIRD1_3685 Pseudomonas putida BIRD-1 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) YP_005931480.1 4133354 D 931281 CDS YP_005931481.1 386013204 12521863 complement(4136739..4137188) 1 NC_017530.1 heat shock protein Hsp20; IbpA 4137188 ibpA 12521863 ibpA Pseudomonas putida BIRD-1 IbpA YP_005931481.1 4136739 R 931281 CDS YP_005931482.1 386013205 12521864 complement(4137522..4138493) 1 NC_017530.1 TRNA-dihydrouridine synthase C 4138493 12521864 PPUBIRD1_3687 Pseudomonas putida BIRD-1 TRNA-dihydrouridine synthase C YP_005931482.1 4137522 R 931281 CDS YP_005931483.1 386013206 12521865 complement(4138544..4138978) 1 NC_017530.1 Thioesterase superfamily protein 4138978 12521865 PPUBIRD1_3688 Pseudomonas putida BIRD-1 Thioesterase superfamily protein YP_005931483.1 4138544 R 931281 CDS YP_005931484.1 386013207 12521866 complement(4139083..4139964) 1 NC_017530.1 Hydrolase, putative 4139964 12521866 PPUBIRD1_3689 Pseudomonas putida BIRD-1 Hydrolase, putative YP_005931484.1 4139083 R 931281 CDS YP_005931485.1 386013208 12521867 complement(4139980..4140519) 1 NC_017530.1 TetR family transcriptional regulator 4140519 12521867 PPUBIRD1_3690 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005931485.1 4139980 R 931281 CDS YP_005931486.1 386013209 12521870 complement(4141227..4142708) 1 NC_017530.1 Glutamyl-tRNA synthetase; protein GltX 4142708 gltX 12521870 gltX Pseudomonas putida BIRD-1 protein GltX YP_005931486.1 4141227 R 931281 CDS YP_005931487.1 386013210 12521871 4142852..4143907 1 NC_017530.1 Secretion protein HlyD family protein 4143907 12521871 PPUBIRD1_3693 Pseudomonas putida BIRD-1 Secretion protein HlyD family protein YP_005931487.1 4142852 D 931281 CDS YP_005931488.1 386013211 12521872 4143897..4145447 1 NC_017530.1 EmrB/QacA family drug resistance transporter 4145447 12521872 PPUBIRD1_3694 Pseudomonas putida BIRD-1 EmrB/QacA family drug resistance transporter YP_005931488.1 4143897 D 931281 CDS YP_005931489.1 386013212 12521873 complement(4145575..4147590) 1 NC_017530.1 UvrABC system protein B; UvrB protein 4147590 uvrB 12521873 uvrB Pseudomonas putida BIRD-1 UvrB protein YP_005931489.1 4145575 R 931281 CDS YP_005931490.1 386013213 12521874 4147876..4149072 1 NC_017530.1 aromatic amino acid aminotransferase; TyrB_2 4149072 tyrB_2 12521874 tyrB_2 Pseudomonas putida BIRD-1 TyrB_2 YP_005931490.1 4147876 D 931281 CDS YP_005931491.1 386013214 12521876 complement(4149269..4149670) 1 NC_017530.1 Cupin 2 domain-containing protein 4149670 12521876 PPUBIRD1_3697 Pseudomonas putida BIRD-1 Cupin 2 domain-containing protein YP_005931491.1 4149269 R 931281 CDS YP_005931492.1 386013215 12521877 complement(4149955..4150515) 1 NC_017530.1 hypothetical protein 4150515 12521877 PPUBIRD1_3698 Pseudomonas putida BIRD-1 hypothetical protein YP_005931492.1 4149955 R 931281 CDS YP_005931493.1 386013216 12521878 complement(4150526..4151131) 1 NC_017530.1 Putative lipoprotein 4151131 12521878 PPUBIRD1_3699 Pseudomonas putida BIRD-1 Putative lipoprotein YP_005931493.1 4150526 R 931281 CDS YP_005931494.1 386013217 12521879 complement(4151198..4152166) 1 NC_017530.1 Molybdenum cofactor synthesis domain-containing protein 4152166 12521879 PPUBIRD1_3700 Pseudomonas putida BIRD-1 Molybdenum cofactor synthesis domain-containing protein YP_005931494.1 4151198 R 931281 CDS YP_005931495.1 386013218 12521880 complement(4152322..4152957) 1 NC_017530.1 TetR family transcriptional regulator 4152957 12521880 PPUBIRD1_3701 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005931495.1 4152322 R 931281 CDS YP_005931496.1 386013219 12521881 complement(4153438..4154220) 1 NC_017530.1 TatD family deoxyribonuclease 4154220 12521881 PPUBIRD1_3702 Pseudomonas putida BIRD-1 TatD family deoxyribonuclease YP_005931496.1 4153438 R 931281 CDS YP_005931497.1 386013220 12521882 complement(4154251..4155237) 1 NC_017530.1 DNA polymerase III subunit delta'; protein HolB 4155237 holB 12521882 holB Pseudomonas putida BIRD-1 protein HolB YP_005931497.1 4154251 R 931281 CDS YP_005931498.1 386013221 12521883 complement(4155230..4155862) 1 NC_017530.1 Thymidylate kinase; hypothetical protein 4155862 tmk 12521883 tmk Pseudomonas putida BIRD-1 hypothetical protein YP_005931498.1 4155230 R 931281 CDS YP_005931499.1 386013222 12521884 complement(4155872..4157107) 1 NC_017530.1 Aminodeoxychorismate lyase 4157107 12521884 PPUBIRD1_3705 Pseudomonas putida BIRD-1 Aminodeoxychorismate lyase YP_005931499.1 4155872 R 931281 CDS YP_005931500.1 386013223 12521885 complement(4157112..4157927) 1 NC_017530.1 4-amino-4-deoxychorismate lyase 4157927 12521885 PPUBIRD1_3706 Pseudomonas putida BIRD-1 4-amino-4-deoxychorismate lyase YP_005931500.1 4157112 R 931281 CDS YP_005931501.1 386013224 12521886 complement(4157927..4159171) 1 NC_017530.1 3-oxoacyl-ACP synthase 4159171 12521886 PPUBIRD1_3707 Pseudomonas putida BIRD-1 3-oxoacyl-ACP synthase YP_005931501.1 4157927 R 931281 CDS YP_005931502.1 386013225 12521887 complement(4159359..4159595) 1 NC_017530.1 Acyl carrier protein (ACP); protein AcpP 4159595 acpP 12521887 acpP Pseudomonas putida BIRD-1 protein AcpP YP_005931502.1 4159359 R 931281 CDS YP_005931503.1 386013226 12521888 complement(4159799..4160539) 1 NC_017530.1 3-ketoacyl-(acyl-carrier-protein) reductase; FabG_2 4160539 fabG_2 12521888 fabG_2 Pseudomonas putida BIRD-1 FabG_2 YP_005931503.1 4159799 R 931281 CDS YP_005931504.1 386013227 12521889 complement(4160555..4161493) 1 NC_017530.1 Malonyl CoA-acyl carrier protein transacylase 4161493 12521889 PPUBIRD1_3710 Pseudomonas putida BIRD-1 Malonyl CoA-acyl carrier protein transacylase YP_005931504.1 4160555 R 931281 CDS YP_005931505.1 386013228 12521890 complement(4161621..4162421) 1 NC_017530.1 phosphate acyltransferase 4162421 12521890 PPUBIRD1_3711 Pseudomonas putida BIRD-1 phosphate acyltransferase YP_005931505.1 4161621 R 931281 CDS YP_005931506.1 386013229 12521891 complement(4162635..4162817) 1 NC_017530.1 50S ribosomal protein L32; protein RpmF 4162817 rpmF 12521891 rpmF Pseudomonas putida BIRD-1 protein RpmF YP_005931506.1 4162635 R 931281 CDS YP_005931507.1 386013230 12521892 complement(4162831..4163358) 1 NC_017530.1 hypothetical protein 4163358 12521892 PPUBIRD1_3713 Pseudomonas putida BIRD-1 hypothetical protein YP_005931507.1 4162831 R 931281 CDS YP_005931508.1 386013231 12521893 4163455..4164033 1 NC_017530.1 Maf-like protein 4164033 12521893 PPUBIRD1_3714 Pseudomonas putida BIRD-1 Maf-like protein YP_005931508.1 4163455 D 931281 CDS YP_005931509.1 386013232 12521894 complement(4164242..4165231) 1 NC_017530.1 signal peptide peptidase SppA 4165231 12521894 PPUBIRD1_3715 Pseudomonas putida BIRD-1 signal peptide peptidase SppA YP_005931509.1 4164242 R 931281 CDS YP_005931510.1 386013233 12521895 complement(4165238..4165912) 1 NC_017530.1 HAD family hydrolase 4165912 12521895 PPUBIRD1_3716 Pseudomonas putida BIRD-1 HAD family hydrolase YP_005931510.1 4165238 R 931281 CDS YP_005931511.1 386013234 12521896 complement(4165916..4166872) 1 NC_017530.1 RluA family pseudouridine synthase 4166872 12521896 PPUBIRD1_3717 Pseudomonas putida BIRD-1 RluA family pseudouridine synthase YP_005931511.1 4165916 R 931281 CDS YP_005931512.1 386013235 12521897 complement(4167108..4167698) 1 NC_017530.1 hypothetical protein 4167698 12521897 PPUBIRD1_3718 Pseudomonas putida BIRD-1 hypothetical protein YP_005931512.1 4167108 R 931281 CDS YP_005931513.1 386013236 12521898 4167678..4170965 1 NC_017530.1 Ribonuclease 4170965 12521898 PPUBIRD1_3719 Pseudomonas putida BIRD-1 Ribonuclease YP_005931513.1 4167678 D 931281 CDS YP_005931514.1 386013237 12521899 complement(4171234..4172253) 1 NC_017530.1 UDP-N-acetylenolpyruvoylglucosamine reductase 4172253 12521899 PPUBIRD1_3720 Pseudomonas putida BIRD-1 UDP-N-acetylenolpyruvoylglucosamine reductase YP_005931514.1 4171234 R 931281 CDS YP_005931515.1 386013238 12521900 complement(4172250..4172714) 1 NC_017530.1 Protein tyrosine phosphatase 4172714 12521900 PPUBIRD1_3721 Pseudomonas putida BIRD-1 Protein tyrosine phosphatase YP_005931515.1 4172250 R 931281 CDS YP_005931516.1 386013239 12521901 complement(4172714..4173478) 1 NC_017530.1 3-deoxy-manno-octulosonate cytidylyltransferase 4173478 12521901 PPUBIRD1_3722 Pseudomonas putida BIRD-1 3-deoxy-manno-octulosonate cytidylyltransferase YP_005931516.1 4172714 R 931281 CDS YP_005931517.1 386013240 12521902 complement(4173475..4173660) 1 NC_017530.1 hypothetical protein 4173660 12521902 PPUBIRD1_3723 Pseudomonas putida BIRD-1 hypothetical protein YP_005931517.1 4173475 R 931281 CDS YP_005931518.1 386013241 12521903 complement(4173705..4174706) 1 NC_017530.1 Tetraacyldisaccharide 4'-kinase; protein LpxK 4174706 lpxK 12521903 lpxK Pseudomonas putida BIRD-1 protein LpxK YP_005931518.1 4173705 R 931281 CDS YP_005931519.1 386013242 12521904 complement(4174706..4175140) 1 NC_017530.1 biopolymer transport protein ExbD/TolR 4175140 12521904 PPUBIRD1_3725 Pseudomonas putida BIRD-1 biopolymer transport protein ExbD/TolR YP_005931519.1 4174706 R 931281 CDS YP_005931520.1 386013243 12521905 complement(4175137..4175811) 1 NC_017530.1 MotA/TolQ/ExbB proton channel 4175811 12521905 PPUBIRD1_3726 Pseudomonas putida BIRD-1 MotA/TolQ/ExbB proton channel YP_005931520.1 4175137 R 931281 CDS YP_005931521.1 386013244 12521906 complement(4175927..4177900) 1 NC_017530.1 DNA internalization-related competence protein ComEC/Rec2 4177900 12521906 PPUBIRD1_3727 Pseudomonas putida BIRD-1 DNA internalization-related competence protein ComEC/Rec2 YP_005931521.1 4175927 R 931281 CDS YP_005931522.1 386013245 12521907 4177871..4178827 1 NC_017530.1 hypothetical protein 4178827 12521907 PPUBIRD1_3728 Pseudomonas putida BIRD-1 hypothetical protein YP_005931522.1 4177871 D 931281 CDS YP_005931523.1 386013246 12521908 complement(4178802..4179581) 1 NC_017530.1 ABC transporter 4179581 12521908 PPUBIRD1_3729 Pseudomonas putida BIRD-1 ABC transporter YP_005931523.1 4178802 R 931281 CDS YP_005931524.1 386013247 12521909 complement(4179578..4180510) 1 NC_017530.1 ABC transporter ATP-binding protein 4180510 12521909 PPUBIRD1_3730 Pseudomonas putida BIRD-1 ABC transporter ATP-binding protein YP_005931524.1 4179578 R 931281 CDS YP_005931525.1 386013248 12521910 complement(4180644..4181267) 1 NC_017530.1 glutathione S-transferase 4181267 12521910 PPUBIRD1_3731 Pseudomonas putida BIRD-1 glutathione S-transferase YP_005931525.1 4180644 R 931281 CDS YP_005931526.1 386013249 12521911 4181767..4184214 1 NC_017530.1 Acyl-coenzyme A dehydrogenase; protein FadE 4184214 fadE 12521911 fadE Pseudomonas putida BIRD-1 protein FadE YP_005931526.1 4181767 D 931281 CDS YP_005931527.1 386013250 12521912 4184294..4184704 1 NC_017530.1 hypothetical protein 4184704 12521912 PPUBIRD1_3733 Pseudomonas putida BIRD-1 hypothetical protein YP_005931527.1 4184294 D 931281 CDS YP_005931528.1 386013251 12521913 complement(4185114..4185710) 1 NC_017530.1 hypothetical protein 4185710 12521913 PPUBIRD1_3734 Pseudomonas putida BIRD-1 hypothetical protein YP_005931528.1 4185114 R 931281 CDS YP_005931529.1 386013252 12521914 4185795..4186487 1 NC_017530.1 YD repeat-containing protein 4186487 12521914 PPUBIRD1_3735 Pseudomonas putida BIRD-1 YD repeat-containing protein YP_005931529.1 4185795 D 931281 CDS YP_005931530.1 386013253 12521915 4186468..4186776 1 NC_017530.1 hypothetical protein 4186776 12521915 PPUBIRD1_3736 Pseudomonas putida BIRD-1 hypothetical protein YP_005931530.1 4186468 D 931281 CDS YP_005931531.1 386013254 12521921 4187902..4188669 1 NC_017530.1 hypothetical protein 4188669 12521921 PPUBIRD1_3737 Pseudomonas putida BIRD-1 hypothetical protein YP_005931531.1 4187902 D 931281 CDS YP_005931532.1 386013255 12521922 complement(4188859..4189341) 1 NC_017530.1 GAF domain-containing protein 4189341 12521922 PPUBIRD1_3738 Pseudomonas putida BIRD-1 GAF domain-containing protein YP_005931532.1 4188859 R 931281 CDS YP_005931533.1 386013256 12521923 complement(4189342..4190229) 1 NC_017530.1 hypothetical protein 4190229 12521923 PPUBIRD1_3739 Pseudomonas putida BIRD-1 hypothetical protein YP_005931533.1 4189342 R 931281 CDS YP_005931534.1 386013257 12521924 4190434..4192791 1 NC_017530.1 Histidine kinase 4192791 12521924 PPUBIRD1_3740 Pseudomonas putida BIRD-1 Histidine kinase YP_005931534.1 4190434 D 931281 CDS YP_005931535.1 386013258 12521925 complement(4192781..4193269) 1 NC_017530.1 glutathione peroxidase 4193269 12521925 PPUBIRD1_3741 Pseudomonas putida BIRD-1 glutathione peroxidase YP_005931535.1 4192781 R 931281 CDS YP_005931536.1 386013259 12521926 complement(4193283..4193678) 1 NC_017530.1 Peptide methionine sulfoxide reductase msrB 4193678 12521926 PPUBIRD1_3742 Pseudomonas putida BIRD-1 Peptide methionine sulfoxide reductase msrB YP_005931536.1 4193283 R 931281 CDS YP_005931537.1 386013260 12521927 4193846..4195057 1 NC_017530.1 aminotransferase yfbQ 4195057 12521927 PPUBIRD1_3743 Pseudomonas putida BIRD-1 aminotransferase yfbQ YP_005931537.1 4193846 D 931281 CDS YP_005931538.1 386013261 12521928 4195566..4196453 1 NC_017530.1 Probable protease htpX homolog; HtpX 4196453 htpX 12521928 htpX Pseudomonas putida BIRD-1 HtpX YP_005931538.1 4195566 D 931281 CDS YP_005931539.1 386013262 12521929 complement(4196633..4197283) 1 NC_017530.1 Thiopurine S-methyltransferase 4197283 12521929 PPUBIRD1_3745 Pseudomonas putida BIRD-1 Thiopurine S-methyltransferase YP_005931539.1 4196633 R 931281 CDS YP_005931540.1 386013263 12521930 4197385..4198152 1 NC_017530.1 Extradiol ring-cleavage dioxygenase III subunit B 4198152 12521930 PPUBIRD1_3746 Pseudomonas putida BIRD-1 Extradiol ring-cleavage dioxygenase III subunit B YP_005931540.1 4197385 D 931281 CDS YP_005931541.1 386013264 12521931 complement(4198294..4199973) 1 NC_017530.1 DEAD/DEAH box helicase 4199973 12521931 PPUBIRD1_3747 Pseudomonas putida BIRD-1 DEAD/DEAH box helicase YP_005931541.1 4198294 R 931281 CDS YP_005931542.1 386013265 12521932 complement(4200325..4201086) 1 NC_017530.1 hypothetical protein 4201086 12521932 PPUBIRD1_3748 Pseudomonas putida BIRD-1 hypothetical protein YP_005931542.1 4200325 R 931281 CDS YP_005931543.1 386013266 12521933 4201197..4202543 1 NC_017530.1 Phospho-2-dehydro-3-deoxyheptonate aldolase 4202543 12521933 PPUBIRD1_3749 Pseudomonas putida BIRD-1 Phospho-2-dehydro-3-deoxyheptonate aldolase YP_005931543.1 4201197 D 931281 CDS YP_005931544.1 386013267 12521934 complement(4203168..4203386) 1 NC_017530.1 hypothetical protein 4203386 12521934 PPUBIRD1_3750 Pseudomonas putida BIRD-1 hypothetical protein YP_005931544.1 4203168 R 931281 CDS YP_005931545.1 386013268 12521935 4203483..4204334 1 NC_017530.1 LysR family transcriptional regulator 4204334 12521935 PPUBIRD1_3751 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931545.1 4203483 D 931281 CDS YP_005931546.1 386013269 12521936 complement(4204363..4205112) 1 NC_017530.1 hypothetical protein 4205112 12521936 PPUBIRD1_3752 Pseudomonas putida BIRD-1 hypothetical protein YP_005931546.1 4204363 R 931281 CDS YP_005931547.1 386013270 12521937 4205226..4206179 1 NC_017530.1 LysR family transcriptional regulator 4206179 12521937 PPUBIRD1_3753 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931547.1 4205226 D 931281 CDS YP_005931548.1 386013271 12521938 4206238..4206693 1 NC_017530.1 MarR family transcriptional regulator 4206693 12521938 PPUBIRD1_3754 Pseudomonas putida BIRD-1 MarR family transcriptional regulator YP_005931548.1 4206238 D 931281 CDS YP_005931549.1 386013272 12521939 4206834..4207262 1 NC_017530.1 OsmC family protein 4207262 12521939 PPUBIRD1_3755 Pseudomonas putida BIRD-1 OsmC family protein YP_005931549.1 4206834 D 931281 CDS YP_005931550.1 386013273 12521940 complement(4207487..4208056) 1 NC_017530.1 Elongation factor P; hypothetical protein 4208056 efp 12521940 efp Pseudomonas putida BIRD-1 hypothetical protein YP_005931550.1 4207487 R 931281 CDS YP_005931551.1 386013274 12521941 complement(4208105..4209238) 1 NC_017530.1 hypothetical protein 4209238 12521941 PPUBIRD1_3757 Pseudomonas putida BIRD-1 hypothetical protein YP_005931551.1 4208105 R 931281 CDS YP_005931552.1 386013275 12521942 4209368..4209766 1 NC_017530.1 hypothetical protein 4209766 12521942 PPUBIRD1_3758 Pseudomonas putida BIRD-1 hypothetical protein YP_005931552.1 4209368 D 931281 CDS YP_005931553.1 386013276 12521943 4209769..4210239 1 NC_017530.1 GreA/GreB family elongation factor 4210239 12521943 PPUBIRD1_3759 Pseudomonas putida BIRD-1 GreA/GreB family elongation factor YP_005931553.1 4209769 D 931281 CDS YP_005931554.1 386013277 12521944 complement(4210354..4210995) 1 NC_017530.1 LysR family transcriptional regulator 4210995 12521944 PPUBIRD1_3760 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931554.1 4210354 R 931281 CDS YP_005931555.1 386013278 12521945 4211110..4211859 1 NC_017530.1 3-ketoacyl-(acyl-carrier-protein) reductase; FabG_3 4211859 fabG_3 12521945 fabG_3 Pseudomonas putida BIRD-1 FabG_3 YP_005931555.1 4211110 D 931281 CDS YP_005931556.1 386013279 12521946 complement(4211899..4212783) 1 NC_017530.1 LysR family transcriptional regulator 4212783 12521946 PPUBIRD1_3762 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931556.1 4211899 R 931281 CDS YP_005931557.1 386013280 12521947 4212890..4214065 1 NC_017530.1 Major facilitator transporter 4214065 12521947 PPUBIRD1_3763 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005931557.1 4212890 D 931281 CDS YP_005931558.1 386013281 12521948 4214290..4214670 1 NC_017530.1 hypothetical protein 4214670 12521948 PPUBIRD1_3764 Pseudomonas putida BIRD-1 hypothetical protein YP_005931558.1 4214290 D 931281 CDS YP_005931559.1 386013282 12521949 4214946..4217078 1 NC_017530.1 TonB-dependent siderophore receptor 4217078 12521949 PPUBIRD1_3765 Pseudomonas putida BIRD-1 TonB-dependent siderophore receptor YP_005931559.1 4214946 D 931281 CDS YP_005931560.1 386013283 12521951 4217592..4218281 1 NC_017530.1 Enoyl-CoA hydratase 4218281 12521951 PPUBIRD1_3766 Pseudomonas putida BIRD-1 Enoyl-CoA hydratase YP_005931560.1 4217592 D 931281 CDS YP_005931561.1 386013284 12521952 4218446..4219159 1 NC_017530.1 1-acyl-sn-glycerol-3-phosphate acyltransferase; protein PlsC 4219159 plsC 12521952 plsC Pseudomonas putida BIRD-1 protein PlsC YP_005931561.1 4218446 D 931281 CDS YP_005931562.1 386013285 12521953 4219240..4220199 1 NC_017530.1 Mg2+/Co2+ transporter 4220199 12521953 PPUBIRD1_3768 Pseudomonas putida BIRD-1 Mg2+/Co2+ transporter YP_005931562.1 4219240 D 931281 CDS YP_005931563.1 386013286 12521954 complement(4220240..4220974) 1 NC_017530.1 Amidotransferase 4220974 12521954 PPUBIRD1_3769 Pseudomonas putida BIRD-1 Amidotransferase YP_005931563.1 4220240 R 931281 CDS YP_005931564.1 386013287 12521955 4221501..4222301 1 NC_017530.1 Cytochrome c family protein 4222301 12521955 PPUBIRD1_3770 Pseudomonas putida BIRD-1 Cytochrome c family protein YP_005931564.1 4221501 D 931281 CDS YP_005931565.1 386013288 12521956 complement(4222347..4222679) 1 NC_017530.1 hypothetical protein 4222679 12521956 PPUBIRD1_3771 Pseudomonas putida BIRD-1 hypothetical protein YP_005931565.1 4222347 R 931281 CDS YP_005931566.1 386013289 12521957 complement(4222857..4223093) 1 NC_017530.1 hypothetical protein 4223093 12521957 PPUBIRD1_3772 Pseudomonas putida BIRD-1 hypothetical protein YP_005931566.1 4222857 R 931281 CDS YP_005931567.1 386013290 12521958 complement(4223299..4225356) 1 NC_017530.1 hypothetical protein 4225356 12521958 PPUBIRD1_3773 Pseudomonas putida BIRD-1 hypothetical protein YP_005931567.1 4223299 R 931281 CDS YP_005931568.1 386013291 12521959 complement(4225496..4225687) 1 NC_017530.1 hypothetical protein 4225687 12521959 PPUBIRD1_3774 Pseudomonas putida BIRD-1 hypothetical protein YP_005931568.1 4225496 R 931281 CDS YP_005931569.1 386013292 12521960 4225814..4226752 1 NC_017530.1 Zinc/iron permease 4226752 12521960 PPUBIRD1_3775 Pseudomonas putida BIRD-1 Zinc/iron permease YP_005931569.1 4225814 D 931281 CDS YP_005931570.1 386013293 12521961 complement(4226901..4227431) 1 NC_017530.1 hypothetical protein 4227431 12521961 PPUBIRD1_3776 Pseudomonas putida BIRD-1 hypothetical protein YP_005931570.1 4226901 R 931281 CDS YP_005931571.1 386013294 12521962 complement(4227492..4228016) 1 NC_017530.1 Ankyrin domain-containing protein 4228016 12521962 PPUBIRD1_3777 Pseudomonas putida BIRD-1 Ankyrin domain-containing protein YP_005931571.1 4227492 R 931281 CDS YP_005931572.1 386013295 12521963 4228283..4228555 1 NC_017530.1 hypothetical protein 4228555 12521963 PPUBIRD1_3779 Pseudomonas putida BIRD-1 hypothetical protein YP_005931572.1 4228283 D 931281 CDS YP_005931573.1 386013296 12521964 complement(4228679..4229215) 1 NC_017530.1 bifunctional; Oxidase, putative 4229215 12521964 PPUBIRD1_3780 Pseudomonas putida BIRD-1 Oxidase, putative YP_005931573.1 4228679 R 931281 CDS YP_005931574.1 386013297 12521965 complement(4229215..4230369) 1 NC_017530.1 Major facilitator transporter 4230369 12521965 PPUBIRD1_3781 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005931574.1 4229215 R 931281 CDS YP_005931575.1 386013298 12521966 complement(4230512..4231603) 1 NC_017530.1 Chorismate synthase; protein AroC 4231603 aroC 12521966 aroC Pseudomonas putida BIRD-1 protein AroC YP_005931575.1 4230512 R 931281 CDS YP_005931576.1 386013299 12521967 4231839..4232801 1 NC_017530.1 Alpha/beta hydrolase fold project 4232801 12521967 PPUBIRD1_3783 Pseudomonas putida BIRD-1 Alpha/beta hydrolase fold project YP_005931576.1 4231839 D 931281 CDS YP_005931577.1 386013300 12521968 4232867..4233649 1 NC_017530.1 hypothetical protein 4233649 12521968 PPUBIRD1_3784 Pseudomonas putida BIRD-1 hypothetical protein YP_005931577.1 4232867 D 931281 CDS YP_005931578.1 386013301 12521969 complement(4233699..4234607) 1 NC_017530.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 4234607 12521969 PPUBIRD1_3785 Pseudomonas putida BIRD-1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_005931578.1 4233699 R 931281 CDS YP_005931579.1 386013302 12521970 4234789..4235379 1 NC_017530.1 Isochorismatase superfamily hydrolase 4235379 12521970 PPUBIRD1_3786 Pseudomonas putida BIRD-1 Isochorismatase superfamily hydrolase YP_005931579.1 4234789 D 931281 CDS YP_005931580.1 386013303 12521971 4235465..4235785 1 NC_017530.1 hypothetical protein 4235785 12521971 PPUBIRD1_3787 Pseudomonas putida BIRD-1 hypothetical protein YP_005931580.1 4235465 D 931281 CDS YP_005931581.1 386013304 12521972 4235960..4236520 1 NC_017530.1 Smr protein/MutS2 4236520 12521972 PPUBIRD1_3788 Pseudomonas putida BIRD-1 Smr protein/MutS2 YP_005931581.1 4235960 D 931281 CDS YP_005931582.1 386013305 12521973 4236591..4237136 1 NC_017530.1 GTP cyclohydrolase 1 1; protein FolE 4237136 folE 12521973 folE Pseudomonas putida BIRD-1 protein FolE YP_005931582.1 4236591 D 931281 CDS YP_005931583.1 386013306 12521974 4237196..4237567 1 NC_017530.1 glutaredoxin 4237567 12521974 PPUBIRD1_3790 Pseudomonas putida BIRD-1 glutaredoxin YP_005931583.1 4237196 D 931281 CDS YP_005931584.1 386013307 12521975 complement(4237933..4238535) 1 NC_017530.1 glutathione S-transferase 4238535 12521975 PPUBIRD1_3791 Pseudomonas putida BIRD-1 glutathione S-transferase YP_005931584.1 4237933 R 931281 CDS YP_005931585.1 386013308 12521976 4238680..4239870 1 NC_017530.1 Benzoate transporter 4239870 12521976 PPUBIRD1_3792 Pseudomonas putida BIRD-1 Benzoate transporter YP_005931585.1 4238680 D 931281 CDS YP_005931586.1 386013309 12521977 complement(4239967..4241907) 1 NC_017530.1 methyl-accepting chemotaxis sensory transducer 4241907 12521977 PPUBIRD1_3793 Pseudomonas putida BIRD-1 methyl-accepting chemotaxis sensory transducer YP_005931586.1 4239967 R 931281 CDS YP_005931587.1 386013310 12521978 4242313..4243056 1 NC_017530.1 hypothetical protein 4243056 12521978 PPUBIRD1_3794 Pseudomonas putida BIRD-1 hypothetical protein YP_005931587.1 4242313 D 931281 CDS YP_005931588.1 386013311 12521979 complement(4243200..4243961) 1 NC_017530.1 short-chain dehydrogenase 4243961 12521979 PPUBIRD1_3795 Pseudomonas putida BIRD-1 short-chain dehydrogenase YP_005931588.1 4243200 R 931281 CDS YP_005931589.1 386013312 12521980 4244140..4245141 1 NC_017530.1 Alcohol dehydrogenase, zinc-containing 4245141 12521980 PPUBIRD1_3796 Pseudomonas putida BIRD-1 Alcohol dehydrogenase, zinc-containing YP_005931589.1 4244140 D 931281 CDS YP_005931590.1 386013313 12521981 complement(4245457..4246158) 1 NC_017530.1 Orotidine 5'-phosphate decarboxylase; PyrF 4246158 pyrF 12521981 pyrF Pseudomonas putida BIRD-1 PyrF YP_005931590.1 4245457 R 931281 CDS YP_005931591.1 386013314 12521982 4246342..4246509 1 NC_017530.1 hypothetical protein 4246509 12521982 PPUBIRD1_3798 Pseudomonas putida BIRD-1 hypothetical protein YP_005931591.1 4246342 D 931281 CDS YP_005931592.1 386013315 12521983 complement(4246601..4246936) 1 NC_017530.1 Helix-hairpin-helix repeat-containing competence protein ComEA 4246936 12521983 PPUBIRD1_3799 Pseudomonas putida BIRD-1 Helix-hairpin-helix repeat-containing competence protein ComEA YP_005931592.1 4246601 R 931281 CDS YP_005931593.1 386013316 12521984 4247366..4248508 1 NC_017530.1 UDP-N-acetylglucosamine 2-epimerase; protein WecB 4248508 wecB 12521984 wecB Pseudomonas putida BIRD-1 protein WecB YP_005931593.1 4247366 D 931281 CDS YP_005931594.1 386013317 12521985 4249073..4249348 1 NC_017530.1 hypothetical protein 4249348 12521985 PPUBIRD1_3801 Pseudomonas putida BIRD-1 hypothetical protein YP_005931594.1 4249073 D 931281 CDS YP_005931595.1 386013318 12521986 complement(4249544..4250281) 1 NC_017530.1 hypothetical protein 4250281 12521986 PPUBIRD1_3802 Pseudomonas putida BIRD-1 hypothetical protein YP_005931595.1 4249544 R 931281 CDS YP_005931596.1 386013319 12521987 4251493..4251687 1 NC_017530.1 ABC transporter 4251687 12521987 PPUBIRD1_3803 Pseudomonas putida BIRD-1 ABC transporter YP_005931596.1 4251493 D 931281 CDS YP_005931597.1 386013320 12521988 4251944..4252354 1 NC_017530.1 ABC transporter 4252354 12521988 PPUBIRD1_3804 Pseudomonas putida BIRD-1 ABC transporter YP_005931597.1 4251944 D 931281 CDS YP_005931598.1 386013321 12521989 4252471..4253517 1 NC_017530.1 Lipopolysaccharide biosynthesis protein 4253517 12521989 PPUBIRD1_3805 Pseudomonas putida BIRD-1 Lipopolysaccharide biosynthesis protein YP_005931598.1 4252471 D 931281 CDS YP_005931599.1 386013322 12521990 4253534..4254601 1 NC_017530.1 Polysaccharide export protein 4254601 12521990 PPUBIRD1_3806 Pseudomonas putida BIRD-1 Polysaccharide export protein YP_005931599.1 4253534 D 931281 CDS YP_005931600.1 386013323 12521991 4254895..4255665 1 NC_017530.1 putative glycosyltransferase; Cps5A 4255665 cps5A 12521991 cps5A Pseudomonas putida BIRD-1 Cps5A YP_005931600.1 4254895 D 931281 CDS YP_005931601.1 386013324 12521992 4255662..4257437 1 NC_017530.1 region 2 capsular polysaccharide biosynthesis protein; Cps5B 4257437 cps5B 12521992 cps5B Pseudomonas putida BIRD-1 Cps5B YP_005931601.1 4255662 D 931281 CDS YP_005931602.1 386013325 12521993 4257517..4259004 1 NC_017530.1 hypothetical protein 4259004 12521993 PPUBIRD1_3809 Pseudomonas putida BIRD-1 hypothetical protein YP_005931602.1 4257517 D 931281 CDS YP_005931603.1 386013326 12521994 4259218..4259850 1 NC_017530.1 2-dehydro-3-deoxyphosphooctonate aldolase 2; protein KdsA 4259850 kdsA 12521994 kdsA Pseudomonas putida BIRD-1 protein KdsA YP_005931603.1 4259218 D 931281 CDS YP_005931604.1 386013327 12521995 4259885..4261171 1 NC_017530.1 bifunctional; 3-deoxy-D-manno-octulosonate cytidylyltransferase 4261171 12521995 PPUBIRD1_3811 Pseudomonas putida BIRD-1 3-deoxy-D-manno-octulosonate cytidylyltransferase YP_005931604.1 4259885 D 931281 CDS YP_005931605.1 386013328 12521996 complement(4261231..4262718) 1 NC_017530.1 hypothetical protein 4262718 12521996 PPUBIRD1_3812 Pseudomonas putida BIRD-1 hypothetical protein YP_005931605.1 4261231 R 931281 CDS YP_005931606.1 386013329 12521997 complement(4262980..4263912) 1 NC_017530.1 KpsF/GutQ family protein 4263912 12521997 PPUBIRD1_3813 Pseudomonas putida BIRD-1 KpsF/GutQ family protein YP_005931606.1 4262980 R 931281 CDS YP_005931607.1 386013330 12521998 4265965..4267749 1 NC_017530.1 capsular polysaccharide biosynthesis protein 4267749 12521998 PPUBIRD1_3815 Pseudomonas putida BIRD-1 capsular polysaccharide biosynthesis protein YP_005931607.1 4265965 D 931281 CDS YP_005931608.1 386013331 12521999 4267872..4269008 1 NC_017530.1 capsular polysaccharide biosynthesis protein 4269008 12521999 PPUBIRD1_3816 Pseudomonas putida BIRD-1 capsular polysaccharide biosynthesis protein YP_005931608.1 4267872 D 931281 CDS YP_005931609.1 386013332 12522000 4269005..4269781 1 NC_017530.1 short-chain dehydrogenase 4269781 12522000 PPUBIRD1_3817 Pseudomonas putida BIRD-1 short-chain dehydrogenase YP_005931609.1 4269005 D 931281 CDS YP_005931610.1 386013333 12522001 4269789..4271324 1 NC_017530.1 sulfatase 4271324 12522001 PPUBIRD1_3818 Pseudomonas putida BIRD-1 sulfatase YP_005931610.1 4269789 D 931281 CDS YP_005931611.1 386013334 12522002 4271329..4271895 1 NC_017530.1 N-acetyltransferase GCN5 4271895 12522002 PPUBIRD1_3819 Pseudomonas putida BIRD-1 N-acetyltransferase GCN5 YP_005931611.1 4271329 D 931281 CDS YP_005931612.1 386013335 12522003 4271895..4274039 1 NC_017530.1 capsular polysaccharide biosynthesis protein 4274039 12522003 PPUBIRD1_3820 Pseudomonas putida BIRD-1 capsular polysaccharide biosynthesis protein YP_005931612.1 4271895 D 931281 CDS YP_005931613.1 386013336 12522004 4274043..4275086 1 NC_017530.1 Phytanoyl-CoA dioxygenase 4275086 12522004 PPUBIRD1_3821 Pseudomonas putida BIRD-1 Phytanoyl-CoA dioxygenase YP_005931613.1 4274043 D 931281 CDS YP_005931614.1 386013337 12522005 4275298..4275753 1 NC_017530.1 hypothetical protein 4275753 12522005 PPUBIRD1_3822 Pseudomonas putida BIRD-1 hypothetical protein YP_005931614.1 4275298 D 931281 CDS YP_005931615.1 386013338 12522006 complement(4275763..4277115) 1 NC_017530.1 bifunctional; 8-amino-7-oxononanoate synthase 4277115 12522006 PPUBIRD1_3823 Pseudomonas putida BIRD-1 8-amino-7-oxononanoate synthase YP_005931615.1 4275763 R 931281 CDS YP_005931616.1 386013339 12522007 complement(4277125..4284624) 1 NC_017530.1 Beta-ketoacyl synthase-like protein 4284624 12522007 PPUBIRD1_3824 Pseudomonas putida BIRD-1 Beta-ketoacyl synthase-like protein YP_005931616.1 4277125 R 931281 CDS YP_005931617.1 386013340 12522008 complement(4285310..4286191) 1 NC_017530.1 glucose-1-phosphate thymidylyltransferase 4286191 12522008 PPUBIRD1_3825 Pseudomonas putida BIRD-1 glucose-1-phosphate thymidylyltransferase YP_005931617.1 4285310 R 931281 CDS YP_005931618.1 386013341 12522009 complement(4286188..4287093) 1 NC_017530.1 DTDP-4-dehydrorhamnose reductase 4287093 12522009 PPUBIRD1_3826 Pseudomonas putida BIRD-1 DTDP-4-dehydrorhamnose reductase YP_005931618.1 4286188 R 931281 CDS YP_005931619.1 386013342 12522010 complement(4287090..4288160) 1 NC_017530.1 DTDP-glucose 4,6-dehydratase 4288160 12522010 PPUBIRD1_3827 Pseudomonas putida BIRD-1 DTDP-glucose 4,6-dehydratase YP_005931619.1 4287090 R 931281 CDS YP_005931620.1 386013343 12522011 complement(4288330..4290324) 1 NC_017530.1 Polysaccharide biosynthesis protein CapD 4290324 12522011 PPUBIRD1_3828 Pseudomonas putida BIRD-1 Polysaccharide biosynthesis protein CapD YP_005931620.1 4288330 R 931281 CDS YP_005931621.1 386013344 12522012 complement(4290355..4290912) 1 NC_017530.1 WbpL 4290912 wbpL 12522012 wbpL Pseudomonas putida BIRD-1 WbpL YP_005931621.1 4290355 R 931281 CDS YP_005931622.1 386013345 12522013 complement(4291365..4292354) 1 NC_017530.1 UDP-glucose 4-epimerase; WbpV 4292354 wbpV 12522013 wbpV Pseudomonas putida BIRD-1 WbpV YP_005931622.1 4291365 R 931281 CDS YP_005931623.1 386013346 12522014 complement(4292351..4293508) 1 NC_017530.1 Glycosyl transferases group 1-like protein 4293508 12522014 PPUBIRD1_3831 Pseudomonas putida BIRD-1 Glycosyl transferases group 1-like protein YP_005931623.1 4292351 R 931281 CDS YP_005931624.1 386013347 12522015 complement(4294559..4295611) 1 NC_017530.1 hypothetical protein 4295611 12522015 PPUBIRD1_3832 Pseudomonas putida BIRD-1 hypothetical protein YP_005931624.1 4294559 R 931281 CDS YP_005931625.1 386013348 12522016 complement(4296464..4297477) 1 NC_017530.1 Polysaccharide biosynthesis protein 4297477 12522016 PPUBIRD1_3833 Pseudomonas putida BIRD-1 Polysaccharide biosynthesis protein YP_005931625.1 4296464 R 931281 CDS YP_005931626.1 386013349 12522017 complement(4298392..4299876) 1 NC_017530.1 hypothetical protein 4299876 12522017 PPUBIRD1_3834 Pseudomonas putida BIRD-1 hypothetical protein YP_005931626.1 4298392 R 931281 CDS YP_005931627.1 386013350 12522018 complement(4299887..4301104) 1 NC_017530.1 Glycosyltransferases involved in cell wall biogenesis 4301104 12522018 PPUBIRD1_3835 Pseudomonas putida BIRD-1 Glycosyltransferases involved in cell wall biogenesis YP_005931627.1 4299887 R 931281 CDS YP_005931628.1 386013351 12522019 complement(4301216..4302268) 1 NC_017530.1 hypothetical protein 4302268 12522019 PPUBIRD1_3836 Pseudomonas putida BIRD-1 hypothetical protein YP_005931628.1 4301216 R 931281 CDS YP_005931629.1 386013352 12522020 complement(4302513..4303955) 1 NC_017530.1 Beta-lactamase domain protein 4303955 12522020 PPUBIRD1_3837 Pseudomonas putida BIRD-1 Beta-lactamase domain protein YP_005931629.1 4302513 R 931281 CDS YP_005931630.1 386013353 12522021 complement(4304049..4304312) 1 NC_017530.1 hypothetical protein 4304312 12522021 PPUBIRD1_3838 Pseudomonas putida BIRD-1 hypothetical protein YP_005931630.1 4304049 R 931281 CDS YP_005931631.1 386013354 12522022 complement(4304332..4304634) 1 NC_017530.1 Integration host factor subunit beta; IhfB 4304634 ihfB 12522022 ihfB Pseudomonas putida BIRD-1 IhfB YP_005931631.1 4304332 R 931281 CDS YP_005931632.1 386013355 12522023 complement(4304821..4305246) 1 NC_017530.1 hypothetical protein 4305246 12522023 PPUBIRD1_3840 Pseudomonas putida BIRD-1 hypothetical protein YP_005931632.1 4304821 R 931281 CDS YP_005931633.1 386013356 12522024 complement(4305323..4306999) 1 NC_017530.1 30S ribosomal protein S1; RpsA 4306999 rpsA 12522024 rpsA Pseudomonas putida BIRD-1 RpsA YP_005931633.1 4305323 R 931281 CDS YP_005931634.1 386013357 12522025 complement(4307124..4307801) 1 NC_017530.1 Cytidylate kinase; Cmk 4307801 cmk 12522025 cmk Pseudomonas putida BIRD-1 Cmk YP_005931634.1 4307124 R 931281 CDS YP_005931635.1 386013358 12522026 complement(4307807..4310047) 1 NC_017530.1 3-phosphoshikimate 1-carboxyvinyltransferase 4310047 12522026 PPUBIRD1_3843 Pseudomonas putida BIRD-1 3-phosphoshikimate 1-carboxyvinyltransferase YP_005931635.1 4307807 R 931281 CDS YP_005931636.1 386013359 12522027 complement(4310212..4311306) 1 NC_017530.1 P-protein; bifunctional; PheA 4311306 pheA 12522027 pheA Pseudomonas putida BIRD-1 PheA YP_005931636.1 4310212 R 931281 CDS YP_005931637.1 386013360 12522028 complement(4311308..4312315) 1 NC_017530.1 Phosphoserine aminotransferase 4312315 12522028 PPUBIRD1_3845 Pseudomonas putida BIRD-1 Phosphoserine aminotransferase YP_005931637.1 4311308 R 931281 CDS YP_005931638.1 386013361 12522029 complement(4312608..4315367) 1 NC_017530.1 DNA gyrase subunit A 4315367 12522029 PPUBIRD1_3846 Pseudomonas putida BIRD-1 DNA gyrase subunit A YP_005931638.1 4312608 R 931281 CDS YP_005931639.1 386013362 12522030 complement(4315733..4316809) 1 NC_017530.1 Methylthioribose-1-phosphate isomerase; MtnA 4316809 mtnA 12522030 mtnA Pseudomonas putida BIRD-1 MtnA YP_005931639.1 4315733 R 931281 CDS YP_005931640.1 386013363 12522031 4316920..4317618 1 NC_017530.1 3-demethylubiquinone-9 3-methyltransferase; protein UbiG 4317618 ubiG 12522031 ubiG Pseudomonas putida BIRD-1 protein UbiG YP_005931640.1 4316920 D 931281 CDS YP_005931641.1 386013364 12522032 4317621..4318292 1 NC_017530.1 phosphoglycolate phosphatase 4318292 12522032 PPUBIRD1_3849 Pseudomonas putida BIRD-1 phosphoglycolate phosphatase YP_005931641.1 4317621 D 931281 CDS YP_005931642.1 386013365 12522033 4318450..4319190 1 NC_017530.1 short-chain dehydrogenase 4319190 12522033 PPUBIRD1_3850 Pseudomonas putida BIRD-1 short-chain dehydrogenase YP_005931642.1 4318450 D 931281 CDS YP_005931643.1 386013366 12522034 complement(4319309..4320124) 1 NC_017530.1 hypothetical protein 4320124 12522034 PPUBIRD1_3851 Pseudomonas putida BIRD-1 hypothetical protein YP_005931643.1 4319309 R 931281 CDS YP_005931644.1 386013367 12522035 complement(4320125..4322581) 1 NC_017530.1 Sensory box protein/GGDEF family protein 4322581 12522035 PPUBIRD1_3852 Pseudomonas putida BIRD-1 Sensory box protein/GGDEF family protein YP_005931644.1 4320125 R 931281 CDS YP_005931645.1 386013368 12522036 complement(4322868..4324700) 1 NC_017530.1 ABC transporter 4324700 12522036 PPUBIRD1_3853 Pseudomonas putida BIRD-1 ABC transporter YP_005931645.1 4322868 R 931281 CDS YP_005931646.1 386013369 12522037 complement(4324693..4325325) 1 NC_017530.1 DSBA oxidoreductase 4325325 12522037 PPUBIRD1_3854 Pseudomonas putida BIRD-1 DSBA oxidoreductase YP_005931646.1 4324693 R 931281 CDS YP_005931647.1 386013370 12522038 complement(4325329..4326261) 1 NC_017530.1 hypothetical protein 4326261 12522038 PPUBIRD1_3855 Pseudomonas putida BIRD-1 hypothetical protein YP_005931647.1 4325329 R 931281 CDS YP_005931648.1 386013371 12522039 complement(4326488..4326784) 1 NC_017530.1 BolA family protein; BolA 4326784 bolA 12522039 bolA Pseudomonas putida BIRD-1 BolA YP_005931648.1 4326488 R 931281 CDS YP_005931649.1 386013372 12522040 complement(4326795..4327319) 1 NC_017530.1 hypothetical protein 4327319 12522040 PPUBIRD1_3857 Pseudomonas putida BIRD-1 hypothetical protein YP_005931649.1 4326795 R 931281 CDS YP_005931650.1 386013373 12522041 4327474..4328868 1 NC_017530.1 Fumarate hydratase class II; FumC_2 4328868 fumC_2 12522041 fumC_2 Pseudomonas putida BIRD-1 FumC_2 YP_005931650.1 4327474 D 931281 CDS YP_005931651.1 386013374 12522042 complement(4328982..4329935) 1 NC_017530.1 hypothetical protein 4329935 12522042 PPUBIRD1_3859 Pseudomonas putida BIRD-1 hypothetical protein YP_005931651.1 4328982 R 931281 CDS YP_005931652.1 386013375 12522043 complement(4330225..4331718) 1 NC_017530.1 hypothetical protein 4331718 12522043 PPUBIRD1_3860 Pseudomonas putida BIRD-1 hypothetical protein YP_005931652.1 4330225 R 931281 CDS YP_005931653.1 386013376 12522044 4331855..4332508 1 NC_017530.1 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC; MnmC 4332508 mnmC 12522044 mnmC Pseudomonas putida BIRD-1 MnmC YP_005931653.1 4331855 D 931281 CDS YP_005931654.1 386013377 12522045 4332505..4333818 1 NC_017530.1 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC; MnmC_2 4333818 mnmC_2 12522045 mnmC_2 Pseudomonas putida BIRD-1 MnmC_2 YP_005931654.1 4332505 D 931281 CDS YP_005931655.1 386013378 12522046 4333949..4335736 1 NC_017530.1 asparagine synthetase; protein AsnB 4335736 asnB 12522046 asnB Pseudomonas putida BIRD-1 protein AsnB YP_005931655.1 4333949 D 931281 CDS YP_005931656.1 386013379 12522047 4335740..4337485 1 NC_017530.1 bifunctional; Acetyltransferase 4337485 12522047 PPUBIRD1_3864 Pseudomonas putida BIRD-1 Acetyltransferase YP_005931656.1 4335740 D 931281 CDS YP_005931657.1 386013380 12522048 4337653..4338837 1 NC_017530.1 hypothetical protein 4338837 12522048 PPUBIRD1_3865 Pseudomonas putida BIRD-1 hypothetical protein YP_005931657.1 4337653 D 931281 CDS YP_005931658.1 386013381 12522049 4338921..4339148 1 NC_017530.1 hypothetical protein 4339148 12522049 PPUBIRD1_3866 Pseudomonas putida BIRD-1 hypothetical protein YP_005931658.1 4338921 D 931281 CDS YP_005931659.1 386013382 12522050 complement(4339163..4339342) 1 NC_017530.1 Carbon storage regulator, CsrA 4339342 12522050 PPUBIRD1_3867 Pseudomonas putida BIRD-1 Carbon storage regulator, CsrA YP_005931659.1 4339163 R 931281 CDS YP_005931660.1 386013383 12522051 complement(4339463..4340272) 1 NC_017530.1 short-chain dehydrogenase 4340272 12522051 PPUBIRD1_3868 Pseudomonas putida BIRD-1 short-chain dehydrogenase YP_005931660.1 4339463 R 931281 CDS YP_005931661.1 386013384 12522052 complement(4340704..4341867) 1 NC_017530.1 hypothetical protein 4341867 12522052 PPUBIRD1_3870 Pseudomonas putida BIRD-1 hypothetical protein YP_005931661.1 4340704 R 931281 CDS YP_005931662.1 386013385 12522053 complement(4341879..4342652) 1 NC_017530.1 hypothetical protein 4342652 12522053 PPUBIRD1_3871 Pseudomonas putida BIRD-1 hypothetical protein YP_005931662.1 4341879 R 931281 CDS YP_005931663.1 386013386 12522054 complement(4342707..4345175) 1 NC_017530.1 hypothetical protein 4345175 12522054 PPUBIRD1_3872 Pseudomonas putida BIRD-1 hypothetical protein YP_005931663.1 4342707 R 931281 CDS YP_005931664.1 386013387 12522055 complement(4345250..4345741) 1 NC_017530.1 hypothetical protein 4345741 12522055 PPUBIRD1_3873 Pseudomonas putida BIRD-1 hypothetical protein YP_005931664.1 4345250 R 931281 CDS YP_005931665.1 386013388 12522056 complement(4346457..4348121) 1 NC_017530.1 Cation/acetate symporter actP; ActP protein 4348121 actP 12522056 actP Pseudomonas putida BIRD-1 ActP protein YP_005931665.1 4346457 R 931281 CDS YP_005931666.1 386013389 12522057 complement(4348118..4348375) 1 NC_017530.1 hypothetical protein 4348375 12522057 PPUBIRD1_3875 Pseudomonas putida BIRD-1 hypothetical protein YP_005931666.1 4348118 R 931281 CDS YP_005931667.1 386013390 12522058 complement(4348633..4349493) 1 NC_017530.1 glycine betaine ABC transporter substrate-binding protein 4349493 12522058 PPUBIRD1_3876 Pseudomonas putida BIRD-1 glycine betaine ABC transporter substrate-binding protein YP_005931667.1 4348633 R 931281 CDS YP_005931668.1 386013391 12522059 4349703..4351256 1 NC_017530.1 Beta (1-6) glucans synthase, putative 4351256 12522059 PPUBIRD1_3877 Pseudomonas putida BIRD-1 Beta (1-6) glucans synthase, putative YP_005931668.1 4349703 D 931281 CDS YP_005931669.1 386013392 12522060 complement(4351332..4351697) 1 NC_017530.1 hypothetical protein 4351697 12522060 PPUBIRD1_3878 Pseudomonas putida BIRD-1 hypothetical protein YP_005931669.1 4351332 R 931281 CDS YP_005931670.1 386013393 12522061 4351888..4353186 1 NC_017530.1 hypothetical protein 4353186 12522061 PPUBIRD1_3879 Pseudomonas putida BIRD-1 hypothetical protein YP_005931670.1 4351888 D 931281 CDS YP_005931671.1 386013394 12522062 4353179..4354006 1 NC_017530.1 VacJ family lipoprotein 4354006 12522062 PPUBIRD1_3880 Pseudomonas putida BIRD-1 VacJ family lipoprotein YP_005931671.1 4353179 D 931281 CDS YP_005931672.1 386013395 12522063 complement(4354096..4355244) 1 NC_017530.1 patatin 4355244 12522063 PPUBIRD1_3881 Pseudomonas putida BIRD-1 patatin YP_005931672.1 4354096 R 931281 CDS YP_005931673.1 386013396 12522064 complement(4355272..4356207) 1 NC_017530.1 lipid A biosynthesis lauroyl acyltransferase; HtrB 4356207 htrB 12522064 htrB Pseudomonas putida BIRD-1 HtrB YP_005931673.1 4355272 R 931281 CDS YP_005931674.1 386013397 12522065 4356319..4357080 1 NC_017530.1 septum formation inhibitor; protein MinC 4357080 minC 12522065 minC Pseudomonas putida BIRD-1 protein MinC YP_005931674.1 4356319 D 931281 CDS YP_005931675.1 386013398 12522066 4357191..4358003 1 NC_017530.1 septum site-determining protein MinD; protein MinD 4358003 minD 12522066 minD Pseudomonas putida BIRD-1 protein MinD YP_005931675.1 4357191 D 931281 CDS YP_005931676.1 386013399 12522067 4358007..4358261 1 NC_017530.1 Cell division topological specificity factor; protein MinE 4358261 minE 12522067 minE Pseudomonas putida BIRD-1 protein MinE YP_005931676.1 4358007 D 931281 CDS YP_005931677.1 386013400 12522068 4358413..4359048 1 NC_017530.1 Pseudouridine synthase 4359048 12522068 PPUBIRD1_3886 Pseudomonas putida BIRD-1 Pseudouridine synthase YP_005931677.1 4358413 D 931281 CDS YP_005931678.1 386013401 12522069 4359219..4360508 1 NC_017530.1 M18 family aminopeptidase 2 4360508 12522069 PPUBIRD1_3887 Pseudomonas putida BIRD-1 M18 family aminopeptidase 2 YP_005931678.1 4359219 D 931281 CDS YP_005931679.1 386013402 12522070 4360646..4360813 1 NC_017530.1 hypothetical protein 4360813 12522070 PPUBIRD1_3888 Pseudomonas putida BIRD-1 hypothetical protein YP_005931679.1 4360646 D 931281 CDS YP_005931680.1 386013403 12522071 4360858..4363005 1 NC_017530.1 hypothetical protein 4363005 12522071 PPUBIRD1_3889 Pseudomonas putida BIRD-1 hypothetical protein YP_005931680.1 4360858 D 931281 CDS YP_005931681.1 386013404 12522072 complement(4363037..4363750) 1 NC_017530.1 GntR family transcriptional regulator 4363750 12522072 PPUBIRD1_3890 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005931681.1 4363037 R 931281 CDS YP_005931682.1 386013405 12522073 4364078..4365142 1 NC_017530.1 Fe3+ ABC transporter periplasmic component-like protein 4365142 12522073 PPUBIRD1_3891 Pseudomonas putida BIRD-1 Fe3+ ABC transporter periplasmic component-like protein YP_005931682.1 4364078 D 931281 CDS YP_005931683.1 386013406 12522074 4365271..4366077 1 NC_017530.1 Type I phosphodiesterase/nucleotide pyrophosphatase 4366077 12522074 PPUBIRD1_3892 Pseudomonas putida BIRD-1 Type I phosphodiesterase/nucleotide pyrophosphatase YP_005931683.1 4365271 D 931281 CDS YP_005931684.1 386013407 12522075 4366074..4366913 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 4366913 12522075 PPUBIRD1_3893 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005931684.1 4366074 D 931281 CDS YP_005931685.1 386013408 12522076 4366903..4367697 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 4367697 12522076 PPUBIRD1_3894 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005931685.1 4366903 D 931281 CDS YP_005931686.1 386013409 12522077 4367699..4368688 1 NC_017530.1 ABC transporter ATP-binding protein 4368688 12522077 PPUBIRD1_3895 Pseudomonas putida BIRD-1 ABC transporter ATP-binding protein YP_005931686.1 4367699 D 931281 CDS YP_005931687.1 386013410 12522078 4368703..4369356 1 NC_017530.1 HAD family hydrolase 4369356 12522078 PPUBIRD1_3896 Pseudomonas putida BIRD-1 HAD family hydrolase YP_005931687.1 4368703 D 931281 CDS YP_005931688.1 386013411 12522079 complement(4369475..4370437) 1 NC_017530.1 Alcohol dehydrogenase, zinc-containing 4370437 12522079 PPUBIRD1_3897 Pseudomonas putida BIRD-1 Alcohol dehydrogenase, zinc-containing YP_005931688.1 4369475 R 931281 CDS YP_005931689.1 386013412 12522080 4370544..4372658 1 NC_017530.1 carboxyl-terminal protease; hypothetical protein 4372658 prc 12522080 prc Pseudomonas putida BIRD-1 hypothetical protein YP_005931689.1 4370544 D 931281 CDS YP_005931690.1 386013413 12522081 4372776..4373813 1 NC_017530.1 Diguanylate phosphodiesterase 4373813 12522081 PPUBIRD1_3899 Pseudomonas putida BIRD-1 Diguanylate phosphodiesterase YP_005931690.1 4372776 D 931281 CDS YP_005931691.1 386013414 12522082 complement(4373884..4374252) 1 NC_017530.1 hypothetical protein 4374252 12522082 PPUBIRD1_3900 Pseudomonas putida BIRD-1 hypothetical protein YP_005931691.1 4373884 R 931281 CDS YP_005931692.1 386013415 12522083 complement(4374249..4374587) 1 NC_017530.1 Cro/CI family transcriptional regulator 4374587 12522083 PPUBIRD1_3901 Pseudomonas putida BIRD-1 Cro/CI family transcriptional regulator YP_005931692.1 4374249 R 931281 CDS YP_005931693.1 386013416 12522084 complement(4374702..4375139) 1 NC_017530.1 hypothetical protein 4375139 12522084 PPUBIRD1_3902 Pseudomonas putida BIRD-1 hypothetical protein YP_005931693.1 4374702 R 931281 CDS YP_005931694.1 386013417 12522085 complement(4375428..4376180) 1 NC_017530.1 Peptidylprolyl isomerase FKBP-type 4376180 12522085 PPUBIRD1_3903 Pseudomonas putida BIRD-1 Peptidylprolyl isomerase FKBP-type YP_005931694.1 4375428 R 931281 CDS YP_005931695.1 386013418 12522086 complement(4376433..4377365) 1 NC_017530.1 LysR family transcriptional regulator; PcaQ 4377365 pcaQ 12522086 pcaQ Pseudomonas putida BIRD-1 PcaQ YP_005931695.1 4376433 R 931281 CDS YP_005931696.1 386013419 12522087 complement(4377376..4378305) 1 NC_017530.1 AraC family transcriptional regulator 4378305 12522087 PPUBIRD1_3905 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005931696.1 4377376 R 931281 CDS YP_005931697.1 386013420 12522088 4378655..4379995 1 NC_017530.1 Major facilitator superfamily transporter phthalate permease 4379995 12522088 PPUBIRD1_3907 Pseudomonas putida BIRD-1 Major facilitator superfamily transporter phthalate permease YP_005931697.1 4378655 D 931281 CDS YP_005931698.1 386013421 12522089 4380215..4380925 1 NC_017530.1 fumarylacetoacetate hydrolase family protein 4380925 12522089 PPUBIRD1_3908 Pseudomonas putida BIRD-1 fumarylacetoacetate hydrolase family protein YP_005931698.1 4380215 D 931281 CDS YP_005931699.1 386013422 12522090 4380944..4381702 1 NC_017530.1 Short chain dehydrogenase/reductase family oxidoreductase 4381702 12522090 PPUBIRD1_3909 Pseudomonas putida BIRD-1 Short chain dehydrogenase/reductase family oxidoreductase YP_005931699.1 4380944 D 931281 CDS YP_005931700.1 386013423 12522091 4381727..4382677 1 NC_017530.1 D-isomer specific 2-hydroxyacid dehydrogenase family protein 4382677 12522091 PPUBIRD1_3910 Pseudomonas putida BIRD-1 D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_005931700.1 4381727 D 931281 CDS YP_005931701.1 386013424 12522092 complement(4382805..4383167) 1 NC_017530.1 nitrite reductase (NAD(P)H), small subunit; NirD 4383167 nirD 12522092 nirD Pseudomonas putida BIRD-1 NirD YP_005931701.1 4382805 R 931281 CDS YP_005931702.1 386013425 12522093 complement(4383167..4385719) 1 NC_017530.1 Nitrite reductase [NAD(P)H] large subunit 4385719 12522093 PPUBIRD1_3912 Pseudomonas putida BIRD-1 Nitrite reductase [NAD(P)H] large subunit YP_005931702.1 4383167 R 931281 CDS YP_005931703.1 386013426 12522094 complement(4386001..4390026) 1 NC_017530.1 bifunctional; molybdopterin oxidoreductase 4390026 12522094 PPUBIRD1_3913 Pseudomonas putida BIRD-1 molybdopterin oxidoreductase YP_005931703.1 4386001 R 931281 CDS YP_005931704.1 386013427 12522095 4390294..4391142 1 NC_017530.1 Methionine aminopeptidase, type I 4391142 12522095 PPUBIRD1_3914 Pseudomonas putida BIRD-1 Methionine aminopeptidase, type I YP_005931704.1 4390294 D 931281 CDS YP_005931705.1 386013428 12522098 4391639..4392559 1 NC_017530.1 Recombination-associated protein rdgC; RdgC 4392559 rdgC 12522098 rdgC Pseudomonas putida BIRD-1 RdgC YP_005931705.1 4391639 D 931281 CDS YP_005931706.1 386013429 12522099 4392873..4393190 1 NC_017530.1 Small multidrug resistance protein 4393190 12522099 PPUBIRD1_3916 Pseudomonas putida BIRD-1 Small multidrug resistance protein YP_005931706.1 4392873 D 931281 CDS YP_005931707.1 386013430 12522100 complement(4393194..4395179) 1 NC_017530.1 phospholipid/glycerol acyltransferase 4395179 12522100 PPUBIRD1_3917 Pseudomonas putida BIRD-1 phospholipid/glycerol acyltransferase YP_005931707.1 4393194 R 931281 CDS YP_005931708.1 386013431 12522101 complement(4395229..4396062) 1 NC_017530.1 amidohydrolase 4396062 12522101 PPUBIRD1_3918 Pseudomonas putida BIRD-1 amidohydrolase YP_005931708.1 4395229 R 931281 CDS YP_005931709.1 386013432 12522102 complement(4396087..4397361) 1 NC_017530.1 Major facilitator transporter 4397361 12522102 PPUBIRD1_3919 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005931709.1 4396087 R 931281 CDS YP_005931710.1 386013433 12522103 complement(4397456..4398187) 1 NC_017530.1 GntR family transcriptional regulator 4398187 12522103 PPUBIRD1_3920 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005931710.1 4397456 R 931281 CDS YP_005931711.1 386013434 12522104 4398383..4399597 1 NC_017530.1 Major facilitator transporter 4399597 12522104 PPUBIRD1_3921 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005931711.1 4398383 D 931281 CDS YP_005931712.1 386013435 12522105 4399724..4403203 1 NC_017530.1 Integral membrane sensor hybrid histidine kinase 4403203 12522105 PPUBIRD1_3922 Pseudomonas putida BIRD-1 Integral membrane sensor hybrid histidine kinase YP_005931712.1 4399724 D 931281 CDS YP_005931713.1 386013436 12522106 complement(4403175..4404656) 1 NC_017530.1 hypothetical protein 4404656 12522106 PPUBIRD1_3923 Pseudomonas putida BIRD-1 hypothetical protein YP_005931713.1 4403175 R 931281 CDS YP_005931714.1 386013437 12522107 4404711..4404887 1 NC_017530.1 hypothetical protein 4404887 12522107 PPUBIRD1_3924 Pseudomonas putida BIRD-1 hypothetical protein YP_005931714.1 4404711 D 931281 CDS YP_005931715.1 386013438 12522108 complement(4404959..4405378) 1 NC_017530.1 Sel1 domain-containing protein repeat-containing protein 4405378 12522108 PPUBIRD1_3925 Pseudomonas putida BIRD-1 Sel1 domain-containing protein repeat-containing protein YP_005931715.1 4404959 R 931281 CDS YP_005931716.1 386013439 12522109 4406329..4406553 1 NC_017530.1 hypothetical protein 4406553 12522109 PPUBIRD1_3926 Pseudomonas putida BIRD-1 hypothetical protein YP_005931716.1 4406329 D 931281 CDS YP_005931717.1 386013440 12522110 4406836..4407285 1 NC_017530.1 hypothetical protein 4407285 12522110 PPUBIRD1_3927 Pseudomonas putida BIRD-1 hypothetical protein YP_005931717.1 4406836 D 931281 CDS YP_005931718.1 386013441 12522111 4407432..4408712 1 NC_017530.1 Membrane protein involved in aromatic hydrocarbon degradation 4408712 12522111 PPUBIRD1_3928 Pseudomonas putida BIRD-1 Membrane protein involved in aromatic hydrocarbon degradation YP_005931718.1 4407432 D 931281 CDS YP_005931719.1 386013442 12522112 complement(4408755..4409684) 1 NC_017530.1 LysR family transcriptional regulator 4409684 12522112 PPUBIRD1_3929 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931719.1 4408755 R 931281 CDS YP_005931720.1 386013443 12522113 4409799..4410059 1 NC_017530.1 hypothetical protein 4410059 12522113 PPUBIRD1_3930 Pseudomonas putida BIRD-1 hypothetical protein YP_005931720.1 4409799 D 931281 CDS YP_005931721.1 386013444 12522114 complement(4410203..4410754) 1 NC_017530.1 glutathione peroxidase 4410754 12522114 PPUBIRD1_3931 Pseudomonas putida BIRD-1 glutathione peroxidase YP_005931721.1 4410203 R 931281 CDS YP_005931722.1 386013445 12522115 complement(4410920..4412095) 1 NC_017530.1 Major facilitator transporter 4412095 12522115 PPUBIRD1_3933 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005931722.1 4410920 R 931281 CDS YP_005931723.1 386013446 12522116 complement(4412184..4412588) 1 NC_017530.1 MarR family transcriptional regulator 4412588 12522116 PPUBIRD1_3934 Pseudomonas putida BIRD-1 MarR family transcriptional regulator YP_005931723.1 4412184 R 931281 CDS YP_005931724.1 386013447 12522117 complement(4412651..4413832) 1 NC_017530.1 glucosyl hydrolase family protein 4413832 12522117 PPUBIRD1_3935 Pseudomonas putida BIRD-1 glucosyl hydrolase family protein YP_005931724.1 4412651 R 931281 CDS YP_005931725.1 386013448 12522118 complement(4413993..4414715) 1 NC_017530.1 cobalamin synthase 4414715 12522118 PPUBIRD1_3936 Pseudomonas putida BIRD-1 cobalamin synthase YP_005931725.1 4413993 R 931281 CDS YP_005931726.1 386013449 12522119 complement(4414717..4415283) 1 NC_017530.1 phosphoglycerate mutase 4415283 12522119 PPUBIRD1_3937 Pseudomonas putida BIRD-1 phosphoglycerate mutase YP_005931726.1 4414717 R 931281 CDS YP_005931727.1 386013450 12522120 complement(4415280..4416335) 1 NC_017530.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; CobT protein 4416335 cobT 12522120 cobT Pseudomonas putida BIRD-1 CobT protein YP_005931727.1 4415280 R 931281 CDS YP_005931728.1 386013451 12522121 complement(4416332..4416853) 1 NC_017530.1 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; bifunctional; protein CobU 4416853 cobU 12522121 cobU Pseudomonas putida BIRD-1 protein CobU YP_005931728.1 4416332 R 931281 CDS YP_005931729.1 386013452 12522122 complement(4416855..4418297) 1 NC_017530.1 Cobyric acid synthase; CobQ 4418297 cobQ 12522122 cobQ Pseudomonas putida BIRD-1 CobQ YP_005931729.1 4416855 R 931281 CDS YP_005931730.1 386013453 12522123 complement(4418306..4419301) 1 NC_017530.1 threonine-phosphate decarboxylase; CobC 4419301 cobC 12522123 cobC Pseudomonas putida BIRD-1 CobC YP_005931730.1 4418306 R 931281 CDS YP_005931731.1 386013454 12522124 complement(4419294..4420202) 1 NC_017530.1 cobalamin biosynthesis protein; CobD 4420202 cobD 12522124 cobD Pseudomonas putida BIRD-1 CobD YP_005931731.1 4419294 R 931281 CDS YP_005931732.1 386013455 12522125 complement(4420199..4420849) 1 NC_017530.1 Cob(II)yrinic acid a,c-diamide reductase 4420849 12522125 PPUBIRD1_3943 Pseudomonas putida BIRD-1 Cob(II)yrinic acid a,c-diamide reductase YP_005931732.1 4420199 R 931281 CDS YP_005931733.1 386013456 12522126 complement(4420846..4422114) 1 NC_017530.1 cobyrinic acid a,c-diamide synthase; CobB protein 4422114 cobB 12522126 cobB Pseudomonas putida BIRD-1 CobB protein YP_005931733.1 4420846 R 931281 CDS YP_005931734.1 386013457 12522127 complement(4422138..4422749) 1 NC_017530.1 cob(I)yrinic acid a,c-diamide adenosyltransferase; protein CobO 4422749 cobO 12522127 cobO Pseudomonas putida BIRD-1 protein CobO YP_005931734.1 4422138 R 931281 CDS YP_005931735.1 386013458 12522128 complement(4423213..4423746) 1 NC_017530.1 NLP/P60 protein 4423746 12522128 PPUBIRD1_3946 Pseudomonas putida BIRD-1 NLP/P60 protein YP_005931735.1 4423213 R 931281 CDS YP_005931736.1 386013459 12522129 complement(4423887..4424486) 1 NC_017530.1 NLP/P60 protein 4424486 12522129 PPUBIRD1_3947 Pseudomonas putida BIRD-1 NLP/P60 protein YP_005931736.1 4423887 R 931281 CDS YP_005931737.1 386013460 12522130 complement(4424653..4425360) 1 NC_017530.1 DNA replication initiation factor 4425360 12522130 PPUBIRD1_3948 Pseudomonas putida BIRD-1 DNA replication initiation factor YP_005931737.1 4424653 R 931281 CDS YP_005931738.1 386013461 12522131 complement(4425528..4426601) 1 NC_017530.1 hypothetical protein 4426601 12522131 PPUBIRD1_3949 Pseudomonas putida BIRD-1 hypothetical protein YP_005931738.1 4425528 R 931281 CDS YP_005931739.1 386013462 12522132 complement(4426614..4427681) 1 NC_017530.1 hypothetical protein 4427681 12522132 PPUBIRD1_3950 Pseudomonas putida BIRD-1 hypothetical protein YP_005931739.1 4426614 R 931281 CDS YP_005931740.1 386013463 12522133 4428002..4429060 1 NC_017530.1 Phosphoribosylformylglycinamidine cyclo-ligase; protein PurM 4429060 purM 12522133 purM Pseudomonas putida BIRD-1 protein PurM YP_005931740.1 4428002 D 931281 CDS YP_005931741.1 386013464 12522134 4429060..4429713 1 NC_017530.1 phosphoribosylglycinamide formyltransferase; PurN 4429713 purN 12522134 purN Pseudomonas putida BIRD-1 PurN YP_005931741.1 4429060 D 931281 CDS YP_005931742.1 386013465 12522135 4429722..4430432 1 NC_017530.1 hypothetical protein 4430432 12522135 PPUBIRD1_3954 Pseudomonas putida BIRD-1 hypothetical protein YP_005931742.1 4429722 D 931281 CDS YP_005931743.1 386013466 12522136 4430669..4430815 1 NC_017530.1 hypothetical protein 4430815 12522136 PPUBIRD1_3955 Pseudomonas putida BIRD-1 hypothetical protein YP_005931743.1 4430669 D 931281 CDS YP_005931744.1 386013467 12522137 complement(4430916..4433174) 1 NC_017530.1 glucose-methanol-choline oxidoreductase 4433174 12522137 PPUBIRD1_3956 Pseudomonas putida BIRD-1 glucose-methanol-choline oxidoreductase YP_005931744.1 4430916 R 931281 CDS YP_005931745.1 386013468 12522138 complement(4433171..4433662) 1 NC_017530.1 hypothetical protein 4433662 12522138 PPUBIRD1_3957 Pseudomonas putida BIRD-1 hypothetical protein YP_005931745.1 4433171 R 931281 CDS YP_005931746.1 386013469 12522139 complement(4433667..4435007) 1 NC_017530.1 hypothetical protein 4435007 12522139 PPUBIRD1_3958 Pseudomonas putida BIRD-1 hypothetical protein YP_005931746.1 4433667 R 931281 CDS YP_005931747.1 386013470 12522140 complement(4435346..4435885) 1 NC_017530.1 hypothetical protein 4435885 12522140 PPUBIRD1_3959 Pseudomonas putida BIRD-1 hypothetical protein YP_005931747.1 4435346 R 931281 CDS YP_005931748.1 386013471 12522141 complement(4435912..4436745) 1 NC_017530.1 nucleoside triphosphate pyrophosphohydrolase; nucleoside triphosphate pyrophosphohydrolase MazG 4436745 mazG 12522141 mazG Pseudomonas putida BIRD-1 nucleoside triphosphate pyrophosphohydrolase MazG YP_005931748.1 4435912 R 931281 CDS YP_005931749.1 386013472 12522142 complement(4436871..4439096) 1 NC_017530.1 GTP pyrophosphokinase 4439096 12522142 PPUBIRD1_3961 Pseudomonas putida BIRD-1 GTP pyrophosphokinase YP_005931749.1 4436871 R 931281 CDS YP_005931750.1 386013473 12522143 complement(4439208..4440566) 1 NC_017530.1 23S rRNA (uracil-5-)-methyltransferase rumA; RumA 4440566 rumA 12522143 rumA Pseudomonas putida BIRD-1 RumA YP_005931750.1 4439208 R 931281 CDS YP_005931751.1 386013474 12522144 complement(4440567..4441466) 1 NC_017530.1 cysteine synthase B; CysM 4441466 cysM 12522144 cysM Pseudomonas putida BIRD-1 CysM YP_005931751.1 4440567 R 931281 CDS YP_005931752.1 386013475 12522145 complement(4441608..4442999) 1 NC_017530.1 Integral membrane sensor signal transduction histidine kinase 4442999 12522145 PPUBIRD1_3964 Pseudomonas putida BIRD-1 Integral membrane sensor signal transduction histidine kinase YP_005931752.1 4441608 R 931281 CDS YP_005931753.1 386013476 12522146 complement(4443003..4443764) 1 NC_017530.1 Two component transcriptional regulator 4443764 12522146 PPUBIRD1_3965 Pseudomonas putida BIRD-1 Two component transcriptional regulator YP_005931753.1 4443003 R 931281 CDS YP_005931754.1 386013477 12522147 4443916..4446669 1 NC_017530.1 Sensor protein gacS; GacS 4446669 gacS 12522147 gacS Pseudomonas putida BIRD-1 GacS YP_005931754.1 4443916 D 931281 CDS YP_005931755.1 386013478 12522148 4446746..4447735 1 NC_017530.1 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein 4447735 12522148 PPUBIRD1_3967 Pseudomonas putida BIRD-1 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein YP_005931755.1 4446746 D 931281 CDS YP_005931756.1 386013479 12522149 4447767..4448204 1 NC_017530.1 hypothetical protein 4448204 12522149 PPUBIRD1_3968 Pseudomonas putida BIRD-1 hypothetical protein YP_005931756.1 4447767 D 931281 CDS YP_005931757.1 386013480 12522150 4448201..4448605 1 NC_017530.1 hypothetical protein 4448605 12522150 PPUBIRD1_3969 Pseudomonas putida BIRD-1 hypothetical protein YP_005931757.1 4448201 D 931281 CDS YP_005931758.1 386013481 12522151 complement(4448723..4449187) 1 NC_017530.1 Alkyl hydroperoxide reductase/thiol specific antioxidant/ Mal allergen 4449187 12522151 PPUBIRD1_3970 Pseudomonas putida BIRD-1 Alkyl hydroperoxide reductase/thiol specific antioxidant/ Mal allergen YP_005931758.1 4448723 R 931281 CDS YP_005931759.1 386013482 12522152 4449273..4449626 1 NC_017530.1 arsenate reductase; ArsC_2 4449626 arsC_2 12522152 arsC_2 Pseudomonas putida BIRD-1 ArsC_2 YP_005931759.1 4449273 D 931281 CDS YP_005931760.1 386013483 12522153 4449623..4450228 1 NC_017530.1 trp repressor binding protein; WrbA 4450228 wrbA 12522153 wrbA Pseudomonas putida BIRD-1 WrbA YP_005931760.1 4449623 D 931281 CDS YP_005931761.1 386013484 12522154 4450221..4450634 1 NC_017530.1 hypothetical protein 4450634 12522154 PPUBIRD1_3973 Pseudomonas putida BIRD-1 hypothetical protein YP_005931761.1 4450221 D 931281 CDS YP_005931762.1 386013485 12522155 complement(4450738..4451409) 1 NC_017530.1 hypothetical protein 4451409 12522155 PPUBIRD1_3974 Pseudomonas putida BIRD-1 hypothetical protein YP_005931762.1 4450738 R 931281 CDS YP_005931763.1 386013486 12522156 complement(4451414..4452238) 1 NC_017530.1 TRNA 2-thiocytidine biosynthesis protein ttcA 4452238 12522156 PPUBIRD1_3975 Pseudomonas putida BIRD-1 TRNA 2-thiocytidine biosynthesis protein ttcA YP_005931763.1 4451414 R 931281 CDS YP_005931764.1 386013487 12522157 4452502..4453101 1 NC_017530.1 hypothetical protein 4453101 12522157 PPUBIRD1_3976 Pseudomonas putida BIRD-1 hypothetical protein YP_005931764.1 4452502 D 931281 CDS YP_005931765.1 386013488 12522158 4453233..4453727 1 NC_017530.1 Protein sprT 4453727 12522158 PPUBIRD1_3977 Pseudomonas putida BIRD-1 Protein sprT YP_005931765.1 4453233 D 931281 CDS YP_005931766.1 386013489 12522159 complement(4453914..4454693) 1 NC_017530.1 oxidoreductase FAD/NAD(P)-binding domain protein; Fpr 4454693 fpr 12522159 fpr Pseudomonas putida BIRD-1 Fpr YP_005931766.1 4453914 R 931281 CDS YP_005931767.1 386013490 12522160 4454832..4455737 1 NC_017530.1 LysR family transcriptional regulator 4455737 12522160 PPUBIRD1_3979 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931767.1 4454832 D 931281 CDS YP_005931768.1 386013491 12522161 complement(4455734..4456099) 1 NC_017530.1 diacylglycerol kinase; hypothetical protein 4456099 dgkA 12522161 dgkA Pseudomonas putida BIRD-1 hypothetical protein YP_005931768.1 4455734 R 931281 CDS YP_005931769.1 386013492 12522162 complement(4456173..4456823) 1 NC_017530.1 LuxR family two component transcriptional regulator 4456823 12522162 PPUBIRD1_3981 Pseudomonas putida BIRD-1 LuxR family two component transcriptional regulator YP_005931769.1 4456173 R 931281 CDS YP_005931770.1 386013493 12522163 complement(4457003..4457713) 1 NC_017530.1 DTW domain-containing protein 4457713 12522163 PPUBIRD1_3982 Pseudomonas putida BIRD-1 DTW domain-containing protein YP_005931770.1 4457003 R 931281 CDS YP_005931771.1 386013494 12522164 4457930..4458349 1 NC_017530.1 hypothetical protein 4458349 12522164 PPUBIRD1_3983 Pseudomonas putida BIRD-1 hypothetical protein YP_005931771.1 4457930 D 931281 CDS YP_005931772.1 386013495 12522165 complement(4458364..4458573) 1 NC_017530.1 hypothetical protein 4458573 12522165 PPUBIRD1_3984 Pseudomonas putida BIRD-1 hypothetical protein YP_005931772.1 4458364 R 931281 CDS YP_005931773.1 386013496 12522166 4458734..4459852 1 NC_017530.1 hypothetical protein 4459852 12522166 PPUBIRD1_3985 Pseudomonas putida BIRD-1 hypothetical protein YP_005931773.1 4458734 D 931281 CDS YP_005931774.1 386013497 12522167 complement(4460248..4460673) 1 NC_017530.1 Regulatory protein recX; protein RecX 4460673 recX 12522167 recX Pseudomonas putida BIRD-1 protein RecX YP_005931774.1 4460248 R 931281 CDS YP_005931775.1 386013498 12522168 complement(4460740..4461807) 1 NC_017530.1 Protein recA; recombinase A 4461807 recA 12522168 recA Pseudomonas putida BIRD-1 recombinase A YP_005931775.1 4460740 R 931281 CDS YP_005931776.1 386013499 12522169 complement(4461911..4462393) 1 NC_017530.1 CinA domain-containing protein 4462393 12522169 PPUBIRD1_3988 Pseudomonas putida BIRD-1 CinA domain-containing protein YP_005931776.1 4461911 R 931281 CDS YP_005931777.1 386013500 12522170 complement(4462449..4463516) 1 NC_017530.1 hypothetical protein 4463516 12522170 PPUBIRD1_3989 Pseudomonas putida BIRD-1 hypothetical protein YP_005931777.1 4462449 R 931281 CDS YP_005931778.1 386013501 12522171 4463703..4466276 1 NC_017530.1 DNA mismatch repair protein mutS; MutS 4466276 mutS 12522171 mutS Pseudomonas putida BIRD-1 MutS YP_005931778.1 4463703 D 931281 CDS YP_005931779.1 386013502 12522172 4466417..4466740 1 NC_017530.1 Ferredoxin 1; FdxA 4466740 fdxA 12522172 fdxA Pseudomonas putida BIRD-1 FdxA YP_005931779.1 4466417 D 931281 CDS YP_005931780.1 386013503 12522173 complement(4467275..4468282) 1 NC_017530.1 RNA polymerase sigma factor RpoS; RpoS 4468282 rpoS 12522173 rpoS Pseudomonas putida BIRD-1 RpoS YP_005931780.1 4467275 R 931281 CDS YP_005931781.1 386013504 12522174 complement(4468391..4469449) 1 NC_017530.1 Peptidase M23B 4469449 12522174 PPUBIRD1_3993 Pseudomonas putida BIRD-1 Peptidase M23B YP_005931781.1 4468391 R 931281 CDS YP_005931782.1 386013505 12522175 complement(4469486..4470160) 1 NC_017530.1 protein-L-isoaspartate O-methyltransferase; hypothetical protein 4470160 pcm 12522175 pcm Pseudomonas putida BIRD-1 hypothetical protein YP_005931782.1 4469486 R 931281 CDS YP_005931783.1 386013506 12522176 complement(4470160..4470909) 1 NC_017530.1 5'-nucleotidase surE; SurE 4470909 surE 12522176 surE Pseudomonas putida BIRD-1 SurE YP_005931783.1 4470160 R 931281 CDS YP_005931784.1 386013507 12522177 complement(4470897..4471955) 1 NC_017530.1 tRNA pseudouridine synthase D; TruD 4471955 truD 12522177 truD Pseudomonas putida BIRD-1 TruD YP_005931784.1 4470897 R 931281 CDS YP_005931785.1 386013508 12522178 complement(4471952..4472425) 1 NC_017530.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; protein IspF 4472425 ispF 12522178 ispF Pseudomonas putida BIRD-1 protein IspF YP_005931785.1 4471952 R 931281 CDS YP_005931786.1 386013509 12522179 complement(4472538..4473392) 1 NC_017530.1 S-formylglutathione hydrolase 4473392 12522179 PPUBIRD1_3998 Pseudomonas putida BIRD-1 S-formylglutathione hydrolase YP_005931786.1 4472538 R 931281 CDS YP_005931787.1 386013510 12522180 complement(4473401..4474513) 1 NC_017530.1 bifunctional; D-isomer specific 2-hydroxyacid dehydrogenase family protein 4474513 12522180 PPUBIRD1_3999 Pseudomonas putida BIRD-1 D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_005931787.1 4473401 R 931281 CDS YP_005931788.1 386013511 12522181 4474621..4475517 1 NC_017530.1 LysR family transcriptional regulator 4475517 12522181 PPUBIRD1_4000 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931788.1 4474621 D 931281 CDS YP_005931789.1 386013512 12522182 complement(4475651..4476358) 1 NC_017530.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; IspD protein 4476358 ispD 12522182 ispD Pseudomonas putida BIRD-1 IspD protein YP_005931789.1 4475651 R 931281 CDS YP_005931790.1 386013513 12522183 complement(4476355..4476636) 1 NC_017530.1 septum formation initiator 4476636 12522183 PPUBIRD1_4002 Pseudomonas putida BIRD-1 septum formation initiator YP_005931790.1 4476355 R 931281 CDS YP_005931791.1 386013514 12522184 complement(4476805..4478094) 1 NC_017530.1 Enolase; hypothetical protein 4478094 eno 12522184 eno Pseudomonas putida BIRD-1 hypothetical protein YP_005931791.1 4476805 R 931281 CDS YP_005931792.1 386013515 12522185 complement(4478249..4479094) 1 NC_017530.1 2-dehydro-3-deoxyphosphooctonate aldolase 1; KdsA_2 4479094 kdsA_2 12522185 kdsA_2 Pseudomonas putida BIRD-1 KdsA_2 YP_005931792.1 4478249 R 931281 CDS YP_005931793.1 386013516 12522186 complement(4479098..4480726) 1 NC_017530.1 CTP synthase; protein PyrG 4480726 pyrG 12522186 pyrG Pseudomonas putida BIRD-1 protein PyrG YP_005931793.1 4479098 R 931281 CDS YP_005931794.1 386013517 12522187 complement(4480808..4480948) 1 NC_017530.1 hypothetical protein 4480948 12522187 PPUBIRD1_4006 Pseudomonas putida BIRD-1 hypothetical protein YP_005931794.1 4480808 R 931281 CDS YP_005931795.1 386013518 12522188 complement(4480994..4482277) 1 NC_017530.1 TRNA(Ile)-lysidine synthase 4482277 12522188 PPUBIRD1_4007 Pseudomonas putida BIRD-1 TRNA(Ile)-lysidine synthase YP_005931795.1 4480994 R 931281 CDS YP_005931796.1 386013519 12522189 complement(4482449..4483396) 1 NC_017530.1 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; protein AccA 4483396 accA 12522189 accA Pseudomonas putida BIRD-1 protein AccA YP_005931796.1 4482449 R 931281 CDS YP_005931797.1 386013520 12522190 complement(4483503..4487027) 1 NC_017530.1 DNA polymerase III subunit alpha; protein DnaE 4487027 dnaE 12522190 dnaE Pseudomonas putida BIRD-1 protein DnaE YP_005931797.1 4483503 R 931281 CDS YP_005931798.1 386013521 12522191 complement(4487214..4487837) 1 NC_017530.1 Ribonuclease HII; protein RnhB 4487837 rnhB 12522191 rnhB Pseudomonas putida BIRD-1 protein RnhB YP_005931798.1 4487214 R 931281 CDS YP_005931799.1 386013522 12522192 complement(4487839..4488966) 1 NC_017530.1 Lipid-A-disaccharide synthase; protein LpxB 4488966 lpxB 12522192 lpxB Pseudomonas putida BIRD-1 protein LpxB YP_005931799.1 4487839 R 931281 CDS YP_005931800.1 386013523 12522193 complement(4488968..4489744) 1 NC_017530.1 Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; protein LpxA 4489744 lpxA 12522193 lpxA Pseudomonas putida BIRD-1 protein LpxA YP_005931800.1 4488968 R 931281 CDS YP_005931801.1 386013524 12522194 complement(4489741..4490181) 1 NC_017530.1 (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; protein FabZ 4490181 fabZ 12522194 fabZ Pseudomonas putida BIRD-1 protein FabZ YP_005931801.1 4489741 R 931281 CDS YP_005931802.1 386013525 12522195 complement(4490296..4491351) 1 NC_017530.1 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; protein LpxD 4491351 lpxD 12522195 lpxD Pseudomonas putida BIRD-1 protein LpxD YP_005931802.1 4490296 R 931281 CDS YP_005931803.1 386013526 12522196 complement(4491353..4491856) 1 NC_017530.1 Outer membrane chaperone Skp (OmpH) 4491856 12522196 PPUBIRD1_4015 Pseudomonas putida BIRD-1 Outer membrane chaperone Skp (OmpH) YP_005931803.1 4491353 R 931281 CDS YP_005931804.1 386013527 12522197 complement(4491901..4494261) 1 NC_017530.1 Surface antigen (D15) 4494261 12522197 PPUBIRD1_4016 Pseudomonas putida BIRD-1 Surface antigen (D15) YP_005931804.1 4491901 R 931281 CDS YP_005931805.1 386013528 12522198 complement(4494335..4495693) 1 NC_017530.1 Putative zinc metalloprotease PA3649 4495693 12522198 PPUBIRD1_4017 Pseudomonas putida BIRD-1 Putative zinc metalloprotease PA3649 YP_005931805.1 4494335 R 931281 CDS YP_005931806.1 386013529 12522199 complement(4495759..4496949) 1 NC_017530.1 1-deoxy-D-xylulose 5-phosphate reductoisomerase; hypothetical protein 4496949 dxr 12522199 dxr Pseudomonas putida BIRD-1 hypothetical protein YP_005931806.1 4495759 R 931281 CDS YP_005931807.1 386013530 12522200 complement(4496946..4497761) 1 NC_017530.1 phosphatidate cytidylyltransferase 4497761 12522200 PPUBIRD1_4019 Pseudomonas putida BIRD-1 phosphatidate cytidylyltransferase YP_005931807.1 4496946 R 931281 CDS YP_005931808.1 386013531 12522201 complement(4497761..4498516) 1 NC_017530.1 Undecaprenyl pyrophosphate synthetase; protein UppS 4498516 uppS 12522201 uppS Pseudomonas putida BIRD-1 protein UppS YP_005931808.1 4497761 R 931281 CDS YP_005931809.1 386013532 12522202 complement(4498532..4499089) 1 NC_017530.1 Ribosome-recycling factor; Frr 4499089 frr 12522202 frr Pseudomonas putida BIRD-1 Frr YP_005931809.1 4498532 R 931281 CDS YP_005931810.1 386013533 12522203 complement(4499086..4499829) 1 NC_017530.1 Uridylate kinase; protein PyrH 4499829 pyrH 12522203 pyrH Pseudomonas putida BIRD-1 protein PyrH YP_005931810.1 4499086 R 931281 CDS YP_005931811.1 386013534 12522204 complement(4500011..4500874) 1 NC_017530.1 Elongation factor Ts; hypothetical protein 4500874 tsf 12522204 tsf Pseudomonas putida BIRD-1 hypothetical protein YP_005931811.1 4500011 R 931281 CDS YP_005931812.1 386013535 12522205 complement(4501060..4501797) 1 NC_017530.1 30S ribosomal protein S2; protein RpsB 4501797 rpsB 12522205 rpsB Pseudomonas putida BIRD-1 protein RpsB YP_005931812.1 4501060 R 931281 CDS YP_005931813.1 386013536 12522206 4502144..4502926 1 NC_017530.1 methionine aminopeptidase; hypothetical protein 4502926 map 12522206 map Pseudomonas putida BIRD-1 hypothetical protein YP_005931813.1 4502144 D 931281 CDS YP_005931814.1 386013537 12522207 4502967..4505669 1 NC_017530.1 [Protein-PII] uridylyltransferase; protein GlnD 4505669 glnD 12522207 glnD Pseudomonas putida BIRD-1 protein GlnD YP_005931814.1 4502967 D 931281 CDS YP_005931815.1 386013538 12522208 4505700..4506896 1 NC_017530.1 hypothetical protein 4506896 12522208 PPUBIRD1_4027 Pseudomonas putida BIRD-1 hypothetical protein YP_005931815.1 4505700 D 931281 CDS YP_005931816.1 386013539 12522209 complement(4507002..4508648) 1 NC_017530.1 Na+/H+ antiporter 4508648 12522209 PPUBIRD1_4028 Pseudomonas putida BIRD-1 Na+/H+ antiporter YP_005931816.1 4507002 R 931281 CDS YP_005931817.1 386013540 12522210 4509048..4509395 1 NC_017530.1 Arsenate reductase related protein 4509395 12522210 PPUBIRD1_4029 Pseudomonas putida BIRD-1 Arsenate reductase related protein YP_005931817.1 4509048 D 931281 CDS YP_005931818.1 386013541 12522211 4509427..4510461 1 NC_017530.1 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 4510461 12522211 PPUBIRD1_4030 Pseudomonas putida BIRD-1 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_005931818.1 4509427 D 931281 CDS YP_005931819.1 386013542 12522212 4510543..4511748 1 NC_017530.1 cysteine desulfurase 4511748 12522212 PPUBIRD1_4031 Pseudomonas putida BIRD-1 cysteine desulfurase YP_005931819.1 4510543 D 931281 CDS YP_005931820.1 386013543 12522213 4511745..4512155 1 NC_017530.1 Fe-S metabolism associated SufE 4512155 12522213 PPUBIRD1_4032 Pseudomonas putida BIRD-1 Fe-S metabolism associated SufE YP_005931820.1 4511745 D 931281 CDS YP_005931821.1 386013544 12522214 complement(4512267..4513082) 1 NC_017530.1 UBA/THIF-type NAD/FAD binding protein 4513082 12522214 PPUBIRD1_4033 Pseudomonas putida BIRD-1 UBA/THIF-type NAD/FAD binding protein YP_005931821.1 4512267 R 931281 CDS YP_005931822.1 386013545 12522215 4513196..4515787 1 NC_017530.1 Glycosyl transferase family protein 4515787 12522215 PPUBIRD1_4034 Pseudomonas putida BIRD-1 Glycosyl transferase family protein YP_005931822.1 4513196 D 931281 CDS YP_005931823.1 386013546 12522216 4515978..4517129 1 NC_017530.1 Succinyl-diaminopimelate desuccinylase; DapE 4517129 dapE 12522216 dapE Pseudomonas putida BIRD-1 DapE YP_005931823.1 4515978 D 931281 CDS YP_005931824.1 386013547 12522217 4517129..4517941 1 NC_017530.1 RRNA (guanine-N(1)-)-methyltransferase 4517941 12522217 PPUBIRD1_4036 Pseudomonas putida BIRD-1 RRNA (guanine-N(1)-)-methyltransferase YP_005931824.1 4517129 D 931281 CDS YP_005931825.1 386013548 12522218 4517959..4518336 1 NC_017530.1 hypothetical protein 4518336 12522218 PPUBIRD1_4037 Pseudomonas putida BIRD-1 hypothetical protein YP_005931825.1 4517959 D 931281 CDS YP_005931826.1 386013549 12522219 complement(4518459..4518668) 1 NC_017530.1 cold shock protein CspA; CspA protein 4518668 cspA 12522219 cspA Pseudomonas putida BIRD-1 CspA protein YP_005931826.1 4518459 R 931281 CDS YP_005931827.1 386013550 12522220 4518902..4521388 1 NC_017530.1 Glycerol-3-phosphate acyltransferase; protein PlsB 4521388 plsB 12522220 plsB Pseudomonas putida BIRD-1 protein PlsB YP_005931827.1 4518902 D 931281 CDS YP_005931828.1 386013551 12522221 4521480..4521863 1 NC_017530.1 Putative lipoprotein 4521863 12522221 PPUBIRD1_4041 Pseudomonas putida BIRD-1 Putative lipoprotein YP_005931828.1 4521480 D 931281 CDS YP_005931829.1 386013552 12522222 4521897..4522583 1 NC_017530.1 hypothetical protein 4522583 12522222 PPUBIRD1_4042 Pseudomonas putida BIRD-1 hypothetical protein YP_005931829.1 4521897 D 931281 CDS YP_005931830.1 386013553 12522223 complement(4522893..4525958) 1 NC_017530.1 Acriflavin resistance protein 4525958 12522223 PPUBIRD1_4043 Pseudomonas putida BIRD-1 Acriflavin resistance protein YP_005931830.1 4522893 R 931281 CDS YP_005931831.1 386013554 12522224 complement(4525965..4527065) 1 NC_017530.1 Efflux transporter, RND family, MFP subunit 4527065 12522224 PPUBIRD1_4044 Pseudomonas putida BIRD-1 Efflux transporter, RND family, MFP subunit YP_005931831.1 4525965 R 931281 CDS YP_005931832.1 386013555 12522225 4527315..4527956 1 NC_017530.1 TetR family transcriptional regulator 4527956 12522225 PPUBIRD1_4045 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005931832.1 4527315 D 931281 CDS YP_005931833.1 386013556 12522226 complement(4528023..4528799) 1 NC_017530.1 hypothetical protein 4528799 12522226 PPUBIRD1_4046 Pseudomonas putida BIRD-1 hypothetical protein YP_005931833.1 4528023 R 931281 CDS YP_005931834.1 386013557 12522227 4528904..4529524 1 NC_017530.1 hypothetical protein 4529524 12522227 PPUBIRD1_4047 Pseudomonas putida BIRD-1 hypothetical protein YP_005931834.1 4528904 D 931281 CDS YP_005931835.1 386013558 12522228 complement(4529527..4530216) 1 NC_017530.1 extensin family protein 4530216 12522228 PPUBIRD1_4048 Pseudomonas putida BIRD-1 extensin family protein YP_005931835.1 4529527 R 931281 CDS YP_005931836.1 386013559 12522229 complement(4530216..4531046) 1 NC_017530.1 Carboxyvinyl-carboxyphosphonate phosphorylmutase, putative 4531046 12522229 PPUBIRD1_4049 Pseudomonas putida BIRD-1 Carboxyvinyl-carboxyphosphonate phosphorylmutase, putative YP_005931836.1 4530216 R 931281 CDS YP_005931837.1 386013560 12522230 complement(4531075..4531944) 1 NC_017530.1 hypothetical protein 4531944 12522230 PPUBIRD1_4050 Pseudomonas putida BIRD-1 hypothetical protein YP_005931837.1 4531075 R 931281 CDS YP_005931838.1 386013561 12522231 complement(4531948..4532238) 1 NC_017530.1 hypothetical protein 4532238 12522231 PPUBIRD1_4051 Pseudomonas putida BIRD-1 hypothetical protein YP_005931838.1 4531948 R 931281 CDS YP_005931839.1 386013562 12522232 complement(4532370..4533044) 1 NC_017530.1 hypothetical protein 4533044 12522232 PPUBIRD1_4052 Pseudomonas putida BIRD-1 hypothetical protein YP_005931839.1 4532370 R 931281 CDS YP_005931840.1 386013563 12522233 complement(4533184..4533834) 1 NC_017530.1 Adenylate kinase; protein Adk 4533834 adk 12522233 adk Pseudomonas putida BIRD-1 protein Adk YP_005931840.1 4533184 R 931281 CDS YP_005931841.1 386013564 12522234 complement(4534092..4536719) 1 NC_017530.1 phosphoenolpyruvate carboxylase 4536719 12522234 PPUBIRD1_4054 Pseudomonas putida BIRD-1 phosphoenolpyruvate carboxylase YP_005931841.1 4534092 R 931281 CDS YP_005931842.1 386013565 12522235 4536901..4537245 1 NC_017530.1 hypothetical protein 4537245 12522235 PPUBIRD1_4055 Pseudomonas putida BIRD-1 hypothetical protein YP_005931842.1 4536901 D 931281 CDS YP_005931843.1 386013566 12522236 4537521..4537934 1 NC_017530.1 hypothetical protein 4537934 12522236 PPUBIRD1_4056 Pseudomonas putida BIRD-1 hypothetical protein YP_005931843.1 4537521 D 931281 CDS YP_005931844.1 386013567 12522237 4537985..4538776 1 NC_017530.1 OmpA/MotB domain-containing protein 4538776 12522237 PPUBIRD1_4057 Pseudomonas putida BIRD-1 OmpA/MotB domain-containing protein YP_005931844.1 4537985 D 931281 CDS YP_005931845.1 386013568 12522238 complement(4538954..4539280) 1 NC_017530.1 hypothetical protein 4539280 12522238 PPUBIRD1_4058 Pseudomonas putida BIRD-1 hypothetical protein YP_005931845.1 4538954 R 931281 CDS YP_005931846.1 386013569 12522239 complement(4539277..4540200) 1 NC_017530.1 Putative lipoprotein 4540200 12522239 PPUBIRD1_4059 Pseudomonas putida BIRD-1 Putative lipoprotein YP_005931846.1 4539277 R 931281 CDS YP_005931847.1 386013570 12522240 complement(4540172..4541449) 1 NC_017530.1 hypothetical protein 4541449 12522240 PPUBIRD1_4060 Pseudomonas putida BIRD-1 hypothetical protein YP_005931847.1 4540172 R 931281 CDS YP_005931848.1 386013571 12522241 complement(4541589..4542137) 1 NC_017530.1 Putative lipoprotein 4542137 12522241 PPUBIRD1_4061 Pseudomonas putida BIRD-1 Putative lipoprotein YP_005931848.1 4541589 R 931281 CDS YP_005931849.1 386013572 12522242 complement(4542168..4542884) 1 NC_017530.1 TetR family transcriptional regulator 4542884 12522242 PPUBIRD1_4062 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005931849.1 4542168 R 931281 CDS YP_005931850.1 386013573 12522243 complement(4543052..4544554) 1 NC_017530.1 Lysyl-tRNA synthetase; LysS protein 4544554 lysS 12522243 lysS Pseudomonas putida BIRD-1 LysS protein YP_005931850.1 4543052 R 931281 CDS YP_005931851.1 386013574 12522244 complement(4544648..4545562) 1 NC_017530.1 peptide chain release factor 2; protein PrfB 4545562 prfB 12522244 prfB Pseudomonas putida BIRD-1 protein PrfB YP_005931851.1 4544648 R 931281 CDS YP_005931852.1 386013575 12522245 complement(4545881..4546888) 1 NC_017530.1 Response regulator/GGDEF domain-containing protein 4546888 12522245 PPUBIRD1_4065 Pseudomonas putida BIRD-1 Response regulator/GGDEF domain-containing protein YP_005931852.1 4545881 R 931281 CDS YP_005931853.1 386013576 12522246 complement(4546937..4547950) 1 NC_017530.1 Chemotaxis response regulator protein-glutamate methylesterase of group 3 operon 4547950 12522246 PPUBIRD1_4066 Pseudomonas putida BIRD-1 Chemotaxis response regulator protein-glutamate methylesterase of group 3 operon YP_005931853.1 4546937 R 931281 CDS YP_005931854.1 386013577 12522247 complement(4547947..4550244) 1 NC_017530.1 CheA signal transduction histidine kinase 4550244 12522247 PPUBIRD1_4067 Pseudomonas putida BIRD-1 CheA signal transduction histidine kinase YP_005931854.1 4547947 R 931281 CDS YP_005931855.1 386013578 12522248 complement(4550241..4550888) 1 NC_017530.1 Putative CheW protein 4550888 12522248 PPUBIRD1_4068 Pseudomonas putida BIRD-1 Putative CheW protein YP_005931855.1 4550241 R 931281 CDS YP_005931856.1 386013579 12522249 complement(4550903..4552177) 1 NC_017530.1 Methyltransferase, CheR-like protein 4552177 12522249 PPUBIRD1_4069 Pseudomonas putida BIRD-1 Methyltransferase, CheR-like protein YP_005931856.1 4550903 R 931281 CDS YP_005931857.1 386013580 12522250 complement(4552174..4552680) 1 NC_017530.1 CheW protein 4552680 12522250 PPUBIRD1_4070 Pseudomonas putida BIRD-1 CheW protein YP_005931857.1 4552174 R 931281 CDS YP_005931858.1 386013581 12522251 complement(4552686..4554308) 1 NC_017530.1 methyl-accepting chemotaxis sensory transducer 4554308 12522251 PPUBIRD1_4071 Pseudomonas putida BIRD-1 methyl-accepting chemotaxis sensory transducer YP_005931858.1 4552686 R 931281 CDS YP_005931859.1 386013582 12522252 complement(4554478..4555161) 1 NC_017530.1 hypothetical protein 4555161 12522252 PPUBIRD1_4072 Pseudomonas putida BIRD-1 hypothetical protein YP_005931859.1 4554478 R 931281 CDS YP_005931860.1 386013583 12522253 4555378..4556529 1 NC_017530.1 Extracellular solute-binding protein 4556529 12522253 PPUBIRD1_4073 Pseudomonas putida BIRD-1 Extracellular solute-binding protein YP_005931860.1 4555378 D 931281 CDS YP_005931861.1 386013584 12522254 4556678..4557709 1 NC_017530.1 Spermidine/putrescine ABC transporter ATPase subunit 4557709 12522254 PPUBIRD1_4074 Pseudomonas putida BIRD-1 Spermidine/putrescine ABC transporter ATPase subunit YP_005931861.1 4556678 D 931281 CDS YP_005931862.1 386013585 12522255 4557711..4558622 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 4558622 12522255 PPUBIRD1_4075 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005931862.1 4557711 D 931281 CDS YP_005931863.1 386013586 12522256 4558612..4559418 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 4559418 12522256 PPUBIRD1_4076 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005931863.1 4558612 D 931281 CDS YP_005931864.1 386013587 12522257 4559436..4560860 1 NC_017530.1 gamma-aminobutyraldehyde dehydrogenase 4560860 12522257 PPUBIRD1_4077 Pseudomonas putida BIRD-1 gamma-aminobutyraldehyde dehydrogenase YP_005931864.1 4559436 D 931281 CDS YP_005931865.1 386013588 12522258 4561240..4561572 1 NC_017530.1 HicB family protein 4561572 12522258 PPUBIRD1_4078 Pseudomonas putida BIRD-1 HicB family protein YP_005931865.1 4561240 D 931281 CDS YP_005931866.1 386013589 12522259 complement(4561641..4562747) 1 NC_017530.1 NADH:flavin oxidoreductase 4562747 12522259 PPUBIRD1_4079 Pseudomonas putida BIRD-1 NADH:flavin oxidoreductase YP_005931866.1 4561641 R 931281 CDS YP_005931867.1 386013590 12522260 4562916..4563044 1 NC_017530.1 hypothetical protein 4563044 12522260 PPUBIRD1_4080 Pseudomonas putida BIRD-1 hypothetical protein YP_005931867.1 4562916 D 931281 CDS YP_005931868.1 386013591 12522261 4563822..4564379 1 NC_017530.1 hypothetical protein 4564379 12522261 PPUBIRD1_4081 Pseudomonas putida BIRD-1 hypothetical protein YP_005931868.1 4563822 D 931281 CDS YP_005931869.1 386013592 12522262 complement(4564479..4566188) 1 NC_017530.1 ssDNA-specific exonuclease RecJ 4566188 12522262 PPUBIRD1_4082 Pseudomonas putida BIRD-1 ssDNA-specific exonuclease RecJ YP_005931869.1 4564479 R 931281 CDS YP_005931870.1 386013593 12522263 complement(4566197..4566739) 1 NC_017530.1 YaeQ family protein 4566739 12522263 PPUBIRD1_4083 Pseudomonas putida BIRD-1 YaeQ family protein YP_005931870.1 4566197 R 931281 CDS YP_005931871.1 386013594 12522264 4566870..4568069 1 NC_017530.1 L-carnitine dehydratase/bile acid-inducible protein F 4568069 12522264 PPUBIRD1_4084 Pseudomonas putida BIRD-1 L-carnitine dehydratase/bile acid-inducible protein F YP_005931871.1 4566870 D 931281 CDS YP_005931872.1 386013595 12522265 4568090..4568965 1 NC_017530.1 hypothetical protein 4568965 12522265 PPUBIRD1_4085 Pseudomonas putida BIRD-1 hypothetical protein YP_005931872.1 4568090 D 931281 CDS YP_005931873.1 386013596 12522266 complement(4569152..4569433) 1 NC_017530.1 hypothetical protein 4569433 12522266 PPUBIRD1_4086 Pseudomonas putida BIRD-1 hypothetical protein YP_005931873.1 4569152 R 931281 CDS YP_005931874.1 386013597 12522267 complement(4569513..4569932) 1 NC_017530.1 Response regulator receiver protein 4569932 12522267 PPUBIRD1_4087 Pseudomonas putida BIRD-1 Response regulator receiver protein YP_005931874.1 4569513 R 931281 CDS YP_005931875.1 386013598 12522268 complement(4570063..4571472) 1 NC_017530.1 Threonine synthase 4571472 12522268 PPUBIRD1_4088 Pseudomonas putida BIRD-1 Threonine synthase YP_005931875.1 4570063 R 931281 CDS YP_005931876.1 386013599 12522269 complement(4571532..4572836) 1 NC_017530.1 Homoserine dehydrogenase; hypothetical protein 4572836 hom 12522269 hom Pseudomonas putida BIRD-1 hypothetical protein YP_005931876.1 4571532 R 931281 CDS YP_005931877.1 386013600 12522270 complement(4572920..4573663) 1 NC_017530.1 Thiol:disulfide interchange protein DsbC 4573663 12522270 PPUBIRD1_4090 Pseudomonas putida BIRD-1 Thiol:disulfide interchange protein DsbC YP_005931877.1 4572920 R 931281 CDS YP_005931878.1 386013601 12522271 complement(4573817..4574713) 1 NC_017530.1 Tyrosine recombinase xerD; XerD protein 4574713 xerD 12522271 xerD Pseudomonas putida BIRD-1 XerD protein YP_005931878.1 4573817 R 931281 CDS YP_005931879.1 386013602 12522272 4574782..4576587 1 NC_017530.1 Sodium/hydrogen exchanger 4576587 12522272 PPUBIRD1_4092 Pseudomonas putida BIRD-1 Sodium/hydrogen exchanger YP_005931879.1 4574782 D 931281 CDS YP_005931880.1 386013603 12522273 complement(4576591..4576998) 1 NC_017530.1 Thioesterase superfamily protein 4576998 12522273 PPUBIRD1_4093 Pseudomonas putida BIRD-1 Thioesterase superfamily protein YP_005931880.1 4576591 R 931281 CDS YP_005931881.1 386013604 12522274 complement(4577093..4577443) 1 NC_017530.1 50S ribosomal protein L19; protein RplS 4577443 rplS 12522274 rplS Pseudomonas putida BIRD-1 protein RplS YP_005931881.1 4577093 R 931281 CDS YP_005931882.1 386013605 12522275 complement(4577486..4578238) 1 NC_017530.1 tRNA (guanine-N(1)-)-methyltransferase; TrmD protein 4578238 trmD 12522275 trmD Pseudomonas putida BIRD-1 TrmD protein YP_005931882.1 4577486 R 931281 CDS YP_005931883.1 386013606 12522276 complement(4578242..4578778) 1 NC_017530.1 Ribosome maturation factor rimM; protein RimM 4578778 rimM 12522276 rimM Pseudomonas putida BIRD-1 protein RimM YP_005931883.1 4578242 R 931281 CDS YP_005931884.1 386013607 12522277 complement(4578784..4579035) 1 NC_017530.1 ribosomal protein S16; protein RpsP 4579035 rpsP 12522277 rpsP Pseudomonas putida BIRD-1 protein RpsP YP_005931884.1 4578784 R 931281 CDS YP_005931885.1 386013608 12522278 complement(4579295..4580671) 1 NC_017530.1 signal recognition particle protein; hypothetical protein 4580671 ffh 12522278 ffh Pseudomonas putida BIRD-1 hypothetical protein YP_005931885.1 4579295 R 931281 CDS YP_005931886.1 386013609 12522279 4580984..4581793 1 NC_017530.1 Cytochrome c assembly protein 4581793 12522279 PPUBIRD1_4099 Pseudomonas putida BIRD-1 Cytochrome c assembly protein YP_005931886.1 4580984 D 931281 CDS YP_005931887.1 386013610 12522280 4581803..4583008 1 NC_017530.1 hypothetical protein 4583008 12522280 PPUBIRD1_4100 Pseudomonas putida BIRD-1 hypothetical protein YP_005931887.1 4581803 D 931281 CDS YP_005931888.1 386013611 12522281 4583281..4584579 1 NC_017530.1 Metabolite-proton symporter 4584579 12522281 PPUBIRD1_4101 Pseudomonas putida BIRD-1 Metabolite-proton symporter YP_005931888.1 4583281 D 931281 CDS YP_005931889.1 386013612 12522282 complement(4584709..4585890) 1 NC_017530.1 Phosphoribosylglycinamide formyltransferase 2; protein PurT 4585890 purT 12522282 purT Pseudomonas putida BIRD-1 protein PurT YP_005931889.1 4584709 R 931281 CDS YP_005931890.1 386013613 12522283 complement(4585967..4586434) 1 NC_017530.1 hypothetical protein 4586434 12522283 PPUBIRD1_4103 Pseudomonas putida BIRD-1 hypothetical protein YP_005931890.1 4585967 R 931281 CDS YP_005931891.1 386013614 12522284 complement(4586632..4586793) 1 NC_017530.1 hypothetical protein 4586793 12522284 PPUBIRD1_4104 Pseudomonas putida BIRD-1 hypothetical protein YP_005931891.1 4586632 R 931281 CDS YP_005931892.1 386013615 12522285 complement(4586825..4587349) 1 NC_017530.1 hexapeptide repeat-containing transferase 4587349 12522285 PPUBIRD1_4105 Pseudomonas putida BIRD-1 hexapeptide repeat-containing transferase YP_005931892.1 4586825 R 931281 CDS YP_005931893.1 386013616 12522286 complement(4587394..4587993) 1 NC_017530.1 NUDIX hydrolase 4587993 12522286 PPUBIRD1_4106 Pseudomonas putida BIRD-1 NUDIX hydrolase YP_005931893.1 4587394 R 931281 CDS YP_005931894.1 386013617 12522287 4588117..4588668 1 NC_017530.1 bifunctional; NUDIX hydrolase 4588668 12522287 PPUBIRD1_4107 Pseudomonas putida BIRD-1 NUDIX hydrolase YP_005931894.1 4588117 D 931281 CDS YP_005931895.1 386013618 12522288 4588691..4589245 1 NC_017530.1 hypothetical protein 4589245 12522288 PPUBIRD1_4108 Pseudomonas putida BIRD-1 hypothetical protein YP_005931895.1 4588691 D 931281 CDS YP_005931896.1 386013619 12522289 4589406..4590170 1 NC_017530.1 TPS family activation/secretion protein 4590170 12522289 PPUBIRD1_4109 Pseudomonas putida BIRD-1 TPS family activation/secretion protein YP_005931896.1 4589406 D 931281 CDS YP_005931897.1 386013620 12522290 4590167..4593505 1 NC_017530.1 Filamentous hemagglutinin outer membrane protein 4593505 12522290 PPUBIRD1_4110 Pseudomonas putida BIRD-1 Filamentous hemagglutinin outer membrane protein YP_005931897.1 4590167 D 931281 CDS YP_005931898.1 386013621 12522291 complement(4593667..4594302) 1 NC_017530.1 hypothetical protein 4594302 12522291 PPUBIRD1_4111 Pseudomonas putida BIRD-1 hypothetical protein YP_005931898.1 4593667 R 931281 CDS YP_005931899.1 386013622 12522292 complement(4594304..4594525) 1 NC_017530.1 hypothetical protein 4594525 12522292 PPUBIRD1_4112 Pseudomonas putida BIRD-1 hypothetical protein YP_005931899.1 4594304 R 931281 CDS YP_005931900.1 386013623 12522293 4594689..4596734 1 NC_017530.1 TonB-dependent receptor 4596734 12522293 PPUBIRD1_4113 Pseudomonas putida BIRD-1 TonB-dependent receptor YP_005931900.1 4594689 D 931281 CDS YP_005931901.1 386013624 12522294 4597031..4598365 1 NC_017530.1 porin B; OprB 4598365 oprB 12522294 oprB Pseudomonas putida BIRD-1 OprB YP_005931901.1 4597031 D 931281 CDS YP_005931902.1 386013625 12522295 4598396..4600807 1 NC_017530.1 Quinoprotein glucose dehydrogenase A 4600807 12522295 PPUBIRD1_4115 Pseudomonas putida BIRD-1 Quinoprotein glucose dehydrogenase A YP_005931902.1 4598396 D 931281 CDS YP_005931903.1 386013626 12522296 4601011..4603428 1 NC_017530.1 ATP-dependent protease La; Lon_2 4603428 lon_2 12522296 lon_2 Pseudomonas putida BIRD-1 Lon_2 YP_005931903.1 4601011 D 931281 CDS YP_005931904.1 386013627 12522297 4603580..4603972 1 NC_017530.1 hypothetical protein 4603972 12522297 PPUBIRD1_4117 Pseudomonas putida BIRD-1 hypothetical protein YP_005931904.1 4603580 D 931281 CDS YP_005931905.1 386013628 12522298 4604062..4604805 1 NC_017530.1 TRNA (cmo5U34)-methyltransferase 4604805 12522298 PPUBIRD1_4118 Pseudomonas putida BIRD-1 TRNA (cmo5U34)-methyltransferase YP_005931905.1 4604062 D 931281 CDS YP_005931906.1 386013629 12522299 4604802..4605758 1 NC_017530.1 TRNA (mo5U34)-methyltransferase 4605758 12522299 PPUBIRD1_4119 Pseudomonas putida BIRD-1 TRNA (mo5U34)-methyltransferase YP_005931906.1 4604802 D 931281 CDS YP_005931907.1 386013630 12522300 complement(4605811..4606551) 1 NC_017530.1 Pyridoxine 5'-phosphate synthase; PdxJ 4606551 pdxJ 12522300 pdxJ Pseudomonas putida BIRD-1 PdxJ YP_005931907.1 4605811 R 931281 CDS YP_005931908.1 386013631 12522301 complement(4606595..4607278) 1 NC_017530.1 DNA repair protein recO; protein RecO 4607278 recO 12522301 recO Pseudomonas putida BIRD-1 protein RecO YP_005931908.1 4606595 R 931281 CDS YP_005931909.1 386013632 12522302 complement(4607448..4608350) 1 NC_017530.1 GTP-binding protein era homolog; hypothetical protein 4608350 era 12522302 era Pseudomonas putida BIRD-1 hypothetical protein YP_005931909.1 4607448 R 931281 CDS YP_005931910.1 386013633 12522303 complement(4608343..4609032) 1 NC_017530.1 Ribonuclease 3; hypothetical protein 4609032 rnc 12522303 rnc Pseudomonas putida BIRD-1 hypothetical protein YP_005931910.1 4608343 R 931281 CDS YP_005931911.1 386013634 12522304 complement(4609196..4610050) 1 NC_017530.1 signal peptidase I; LepB protein 4610050 lepB 12522304 lepB Pseudomonas putida BIRD-1 LepB protein YP_005931911.1 4609196 R 931281 CDS YP_005931912.1 386013635 12522305 complement(4610056..4611855) 1 NC_017530.1 GTP-binding protein lepA; LepA protein 4611855 lepA 12522305 lepA Pseudomonas putida BIRD-1 LepA protein YP_005931912.1 4610056 R 931281 CDS YP_005931913.1 386013636 12522306 complement(4612036..4613439) 1 NC_017530.1 protease Do; AlgY 4613439 algY 12522306 algY Pseudomonas putida BIRD-1 AlgY YP_005931913.1 4612036 R 931281 CDS YP_005931914.1 386013637 12522307 complement(4613646..4614611) 1 NC_017530.1 sigma E regulatory protein, MucB/RseB; AlgN 4614611 algN 12522307 algN Pseudomonas putida BIRD-1 AlgN YP_005931914.1 4613646 R 931281 CDS YP_005931915.1 386013638 12522308 complement(4614624..4615214) 1 NC_017530.1 anti sigma-E protein, RseA; MucA 4615214 mucA 12522308 mucA Pseudomonas putida BIRD-1 MucA YP_005931915.1 4614624 R 931281 CDS YP_005931916.1 386013639 12522309 complement(4615248..4615829) 1 NC_017530.1 RNA polymerase sigma factor AlgU; AlgU 4615829 algU 12522309 algU Pseudomonas putida BIRD-1 AlgU YP_005931916.1 4615248 R 931281 CDS YP_005931917.1 386013640 12522310 4616294..4617868 1 NC_017530.1 L-aspartate oxidase; NadB protein 4617868 nadB 12522310 nadB Pseudomonas putida BIRD-1 NadB protein YP_005931917.1 4616294 D 931281 CDS YP_005931918.1 386013641 12522311 complement(4617987..4618445) 1 NC_017530.1 hypothetical protein 4618445 12522311 PPUBIRD1_4132 Pseudomonas putida BIRD-1 hypothetical protein YP_005931918.1 4617987 R 931281 CDS YP_005931919.1 386013642 12522312 complement(4618429..4618683) 1 NC_017530.1 hypothetical protein 4618683 12522312 PPUBIRD1_4133 Pseudomonas putida BIRD-1 hypothetical protein YP_005931919.1 4618429 R 931281 CDS YP_005931920.1 386013643 12522313 4618817..4619758 1 NC_017530.1 hypothetical protein 4619758 12522313 PPUBIRD1_4134 Pseudomonas putida BIRD-1 hypothetical protein YP_005931920.1 4618817 D 931281 CDS YP_005931921.1 386013644 12522314 4619808..4620620 1 NC_017530.1 Putative signal transduction protein 4620620 12522314 PPUBIRD1_4135 Pseudomonas putida BIRD-1 Putative signal transduction protein YP_005931921.1 4619808 D 931281 CDS YP_005931922.1 386013645 12522315 complement(4620686..4622065) 1 NC_017530.1 Integral membrane sensor signal transduction histidine kinase 4622065 12522315 PPUBIRD1_4136 Pseudomonas putida BIRD-1 Integral membrane sensor signal transduction histidine kinase YP_005931922.1 4620686 R 931281 CDS YP_005931923.1 386013646 12522316 complement(4622058..4622729) 1 NC_017530.1 winged helix family two component transcriptional regulator; TctD 4622729 tctD 12522316 tctD Pseudomonas putida BIRD-1 TctD YP_005931923.1 4622058 R 931281 CDS YP_005931924.1 386013647 12522317 4622930..4624219 1 NC_017530.1 Outer membrane porin 4624219 12522317 PPUBIRD1_4138 Pseudomonas putida BIRD-1 Outer membrane porin YP_005931924.1 4622930 D 931281 CDS YP_005931925.1 386013648 12522318 4624266..4625246 1 NC_017530.1 hypothetical protein 4625246 12522318 PPUBIRD1_4139 Pseudomonas putida BIRD-1 hypothetical protein YP_005931925.1 4624266 D 931281 CDS YP_005931926.1 386013649 12522319 4625445..4625903 1 NC_017530.1 Tricarboxylate transport protein TctB, putative 4625903 12522319 PPUBIRD1_4140 Pseudomonas putida BIRD-1 Tricarboxylate transport protein TctB, putative YP_005931926.1 4625445 D 931281 CDS YP_005931927.1 386013650 12522320 4625905..4627419 1 NC_017530.1 hypothetical protein 4627419 12522320 PPUBIRD1_4141 Pseudomonas putida BIRD-1 hypothetical protein YP_005931927.1 4625905 D 931281 CDS YP_005931928.1 386013651 12522321 4627427..4628467 1 NC_017530.1 hypothetical protein 4628467 12522321 PPUBIRD1_4142 Pseudomonas putida BIRD-1 hypothetical protein YP_005931928.1 4627427 D 931281 CDS YP_005931929.1 386013652 12522322 4628555..4630240 1 NC_017530.1 5'-nucleotidase domain-containing protein 4630240 12522322 PPUBIRD1_4143 Pseudomonas putida BIRD-1 5'-nucleotidase domain-containing protein YP_005931929.1 4628555 D 931281 CDS YP_005931930.1 386013653 12522323 complement(4630267..4630959) 1 NC_017530.1 uracil-DNA glycosylase 4630959 ung 12522323 ung Pseudomonas putida BIRD-1 uracil-DNA glycosylase YP_005931930.1 4630267 R 931281 CDS YP_005931931.1 386013654 12522324 4631086..4632192 1 NC_017530.1 Enoyl-CoA hydratase/isomerase 4632192 12522324 PPUBIRD1_4145 Pseudomonas putida BIRD-1 Enoyl-CoA hydratase/isomerase YP_005931931.1 4631086 D 931281 CDS YP_005931932.1 386013655 12522325 complement(4632237..4632686) 1 NC_017530.1 hypothetical protein 4632686 12522325 PPUBIRD1_4146 Pseudomonas putida BIRD-1 hypothetical protein YP_005931932.1 4632237 R 931281 CDS YP_005931933.1 386013656 12522326 4632899..4634380 1 NC_017530.1 Diguanylate cyclase 4634380 12522326 PPUBIRD1_4147 Pseudomonas putida BIRD-1 Diguanylate cyclase YP_005931933.1 4632899 D 931281 CDS YP_005931934.1 386013657 12522327 4634373..4634585 1 NC_017530.1 hypothetical protein 4634585 12522327 PPUBIRD1_4148 Pseudomonas putida BIRD-1 hypothetical protein YP_005931934.1 4634373 D 931281 CDS YP_005931935.1 386013658 12522328 4634594..4635286 1 NC_017530.1 Pseudouridine synthase 4635286 12522328 PPUBIRD1_4149 Pseudomonas putida BIRD-1 Pseudouridine synthase YP_005931935.1 4634594 D 931281 CDS YP_005931936.1 386013659 12522329 4635629..4636516 1 NC_017530.1 (R)-3-hydroxydecanoyl-ACP:CoA transacylase; PhaG 4636516 phaG 12522329 phaG Pseudomonas putida BIRD-1 PhaG YP_005931936.1 4635629 D 931281 CDS YP_005931937.1 386013660 12522331 4636910..4638616 1 NC_017530.1 Sulfate transporter 4638616 12522331 PPUBIRD1_4152 Pseudomonas putida BIRD-1 Sulfate transporter YP_005931937.1 4636910 D 931281 CDS YP_005931938.1 386013661 12522332 4638821..4639831 1 NC_017530.1 hypothetical protein 4639831 12522332 PPUBIRD1_4153 Pseudomonas putida BIRD-1 hypothetical protein YP_005931938.1 4638821 D 931281 CDS YP_005931939.1 386013662 12522333 complement(4639865..4641079) 1 NC_017530.1 hypothetical protein 4641079 12522333 PPUBIRD1_4154 Pseudomonas putida BIRD-1 hypothetical protein YP_005931939.1 4639865 R 931281 CDS YP_005931940.1 386013663 12522334 complement(4641246..4641863) 1 NC_017530.1 hypothetical protein 4641863 12522334 PPUBIRD1_4155 Pseudomonas putida BIRD-1 hypothetical protein YP_005931940.1 4641246 R 931281 CDS YP_005931941.1 386013664 12522335 4642050..4644341 1 NC_017530.1 Periplasmic beta-glucosidase 4644341 12522335 PPUBIRD1_4156 Pseudomonas putida BIRD-1 Periplasmic beta-glucosidase YP_005931941.1 4642050 D 931281 CDS YP_005931942.1 386013665 12522336 4644473..4646230 1 NC_017530.1 Integral membrane sensor signal transduction histidine kinase 4646230 12522336 PPUBIRD1_4157 Pseudomonas putida BIRD-1 Integral membrane sensor signal transduction histidine kinase YP_005931942.1 4644473 D 931281 CDS YP_005931943.1 386013666 12522337 4646224..4647558 1 NC_017530.1 Two component, sigma54 specific, Fis family transcriptional regulator 4647558 12522337 PPUBIRD1_4158 Pseudomonas putida BIRD-1 Two component, sigma54 specific, Fis family transcriptional regulator YP_005931943.1 4646224 D 931281 CDS YP_005931944.1 386013667 12522338 4647811..4649130 1 NC_017530.1 Major facilitator superfamily metabolite/H(+) symporter 4649130 12522338 PPUBIRD1_4160 Pseudomonas putida BIRD-1 Major facilitator superfamily metabolite/H(+) symporter YP_005931944.1 4647811 D 931281 CDS YP_005931945.1 386013668 12522339 4649432..4649758 1 NC_017530.1 hypothetical protein 4649758 12522339 PPUBIRD1_4161 Pseudomonas putida BIRD-1 hypothetical protein YP_005931945.1 4649432 D 931281 CDS YP_005931946.1 386013669 12522340 4649878..4650483 1 NC_017530.1 hypothetical protein 4650483 12522340 PPUBIRD1_4162 Pseudomonas putida BIRD-1 hypothetical protein YP_005931946.1 4649878 D 931281 CDS YP_005931947.1 386013670 12522341 complement(4650484..4650750) 1 NC_017530.1 hypothetical protein 4650750 12522341 PPUBIRD1_4163 Pseudomonas putida BIRD-1 hypothetical protein YP_005931947.1 4650484 R 931281 CDS YP_005931948.1 386013671 12522342 complement(4650767..4651060) 1 NC_017530.1 antibiotic biosynthesis monooxygenase 4651060 12522342 PPUBIRD1_4164 Pseudomonas putida BIRD-1 antibiotic biosynthesis monooxygenase YP_005931948.1 4650767 R 931281 CDS YP_005931949.1 386013672 12522343 4651263..4652183 1 NC_017530.1 AraC family transcriptional regulator 4652183 12522343 PPUBIRD1_4165 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005931949.1 4651263 D 931281 CDS YP_005931950.1 386013673 12522344 complement(4652307..4653944) 1 NC_017530.1 hypothetical protein 4653944 12522344 PPUBIRD1_4166 Pseudomonas putida BIRD-1 hypothetical protein YP_005931950.1 4652307 R 931281 CDS YP_005931951.1 386013674 12522345 4654059..4654934 1 NC_017530.1 LysR family transcriptional regulator 4654934 12522345 PPUBIRD1_4167 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931951.1 4654059 D 931281 CDS YP_005931952.1 386013675 12522346 complement(4654954..4655568) 1 NC_017530.1 NAD-dependent epimerase/dehydratase 4655568 12522346 PPUBIRD1_4168 Pseudomonas putida BIRD-1 NAD-dependent epimerase/dehydratase YP_005931952.1 4654954 R 931281 CDS YP_005931953.1 386013676 12522347 4655752..4656660 1 NC_017530.1 LysR family transcriptional regulator 4656660 12522347 PPUBIRD1_4169 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005931953.1 4655752 D 931281 CDS YP_005931954.1 386013677 12522348 4656700..4656873 1 NC_017530.1 hypothetical protein 4656873 12522348 PPUBIRD1_4170 Pseudomonas putida BIRD-1 hypothetical protein YP_005931954.1 4656700 D 931281 CDS YP_005931955.1 386013678 12522349 complement(4656893..4657762) 1 NC_017530.1 Oxaloacetate decarboxylase 4657762 12522349 PPUBIRD1_4171 Pseudomonas putida BIRD-1 Oxaloacetate decarboxylase YP_005931955.1 4656893 R 931281 CDS YP_005931956.1 386013679 12522350 4658145..4659596 1 NC_017530.1 EmrB/QacA family drug resistance transporter 4659596 12522350 PPUBIRD1_4172 Pseudomonas putida BIRD-1 EmrB/QacA family drug resistance transporter YP_005931956.1 4658145 D 931281 CDS YP_005931957.1 386013680 12522351 complement(4659716..4660348) 1 NC_017530.1 Probable HTH-type transcriptional regulator arpR; TtgR 4660348 ttgR 12522351 ttgR Pseudomonas putida BIRD-1 TtgR YP_005931957.1 4659716 R 931281 CDS YP_005931958.1 386013681 12522352 4660605..4661759 1 NC_017530.1 Toluene efflux pump periplasmic linker protein ttgA; TtgA 4661759 ttgA 12522352 ttgA Pseudomonas putida BIRD-1 TtgA YP_005931958.1 4660605 D 931281 CDS YP_005931959.1 386013682 12522353 4661763..4664915 1 NC_017530.1 Antibiotic efflux pump membrane transporter arpB; ArpB 4664915 arpB 12522353 arpB Pseudomonas putida BIRD-1 ArpB YP_005931959.1 4661763 D 931281 CDS YP_005931960.1 386013683 12522354 4664912..4666366 1 NC_017530.1 Toluene efflux pump outer membrane protein ttgC; TtgC 4666366 ttgC 12522354 ttgC Pseudomonas putida BIRD-1 TtgC YP_005931960.1 4664912 D 931281 CDS YP_005931961.1 386013684 12522355 4666771..4668027 1 NC_017530.1 PhaK-like protein 4668027 12522355 PPUBIRD1_4177 Pseudomonas putida BIRD-1 PhaK-like protein YP_005931961.1 4666771 D 931281 CDS YP_005931962.1 386013685 12522356 4668270..4668794 1 NC_017530.1 PRS2-like protein 4668794 12522356 PPUBIRD1_4178 Pseudomonas putida BIRD-1 PRS2-like protein YP_005931962.1 4668270 D 931281 CDS YP_005931963.1 386013686 12522357 complement(4668848..4669240) 1 NC_017530.1 4-carboxymuconolactone decarboxylase; protein PcaC 4669240 pcaC 12522357 pcaC Pseudomonas putida BIRD-1 protein PcaC YP_005931963.1 4668848 R 931281 CDS YP_005931964.1 386013687 12522358 complement(4669251..4670042) 1 NC_017530.1 3-oxoadipate enol-lactonase 4670042 12522358 PPUBIRD1_4180 Pseudomonas putida BIRD-1 3-oxoadipate enol-lactonase YP_005931964.1 4669251 R 931281 CDS YP_005931965.1 386013688 12522359 complement(4670054..4671406) 1 NC_017530.1 3-carboxy-cis,cis-muconate cycloisomerase 4671406 12522359 PPUBIRD1_4181 Pseudomonas putida BIRD-1 3-carboxy-cis,cis-muconate cycloisomerase YP_005931965.1 4670054 R 931281 CDS YP_005931966.1 386013689 12522360 complement(4671416..4672705) 1 NC_017530.1 Major facilitator superfamily metabolite/H(+) symporter 4672705 12522360 PPUBIRD1_4182 Pseudomonas putida BIRD-1 Major facilitator superfamily metabolite/H(+) symporter YP_005931966.1 4671416 R 931281 CDS YP_005931967.1 386013690 12522361 complement(4672893..4674095) 1 NC_017530.1 beta-ketoadipyl-CoA thiolase 4674095 12522361 PPUBIRD1_4183 Pseudomonas putida BIRD-1 beta-ketoadipyl-CoA thiolase YP_005931967.1 4672893 R 931281 CDS YP_005931968.1 386013691 12522362 complement(4674421..4675767) 1 NC_017530.1 4-hydroxybenzoate transporter 4675767 12522362 PPUBIRD1_4185 Pseudomonas putida BIRD-1 4-hydroxybenzoate transporter YP_005931968.1 4674421 R 931281 CDS YP_005931969.1 386013692 12522363 complement(4676088..4676963) 1 NC_017530.1 pca regulon regulatory protein; PcaR 4676963 pcaR 12522363 pcaR Pseudomonas putida BIRD-1 PcaR YP_005931969.1 4676088 R 931281 CDS YP_005931970.1 386013693 12522364 4676991..4677455 1 NC_017530.1 hypothetical protein 4677455 12522364 PPUBIRD1_4187 Pseudomonas putida BIRD-1 hypothetical protein YP_005931970.1 4676991 D 931281 CDS YP_005931971.1 386013694 12522365 4677442..4677642 1 NC_017530.1 hypothetical protein 4677642 12522365 PPUBIRD1_4188 Pseudomonas putida BIRD-1 hypothetical protein YP_005931971.1 4677442 D 931281 CDS YP_005931972.1 386013695 12522366 4677955..4679427 1 NC_017530.1 Phosphate transporter 4679427 12522366 PPUBIRD1_4189 Pseudomonas putida BIRD-1 Phosphate transporter YP_005931972.1 4677955 D 931281 CDS YP_005931973.1 386013696 12522367 complement(4679550..4681025) 1 NC_017530.1 hypothetical protein 4681025 12522367 PPUBIRD1_4190 Pseudomonas putida BIRD-1 hypothetical protein YP_005931973.1 4679550 R 931281 CDS YP_005931974.1 386013697 12522368 4681194..4683068 1 NC_017530.1 methyl-accepting chemotaxis sensory transducer 4683068 12522368 PPUBIRD1_4191 Pseudomonas putida BIRD-1 methyl-accepting chemotaxis sensory transducer YP_005931974.1 4681194 D 931281 CDS YP_005931975.1 386013698 12522369 4683237..4684358 1 NC_017530.1 Glycosyl transferase, group 1 family protein 4684358 12522369 PPUBIRD1_4192 Pseudomonas putida BIRD-1 Glycosyl transferase, group 1 family protein YP_005931975.1 4683237 D 931281 CDS YP_005931976.1 386013699 12522370 4684351..4685115 1 NC_017530.1 hypothetical protein 4685115 12522370 PPUBIRD1_4193 Pseudomonas putida BIRD-1 hypothetical protein YP_005931976.1 4684351 D 931281 CDS YP_005931977.1 386013700 12522371 4685112..4686104 1 NC_017530.1 hypothetical protein 4686104 12522371 PPUBIRD1_4194 Pseudomonas putida BIRD-1 hypothetical protein YP_005931977.1 4685112 D 931281 CDS YP_005931978.1 386013701 12522372 complement(4686336..4687187) 1 NC_017530.1 formyltetrahydrofolate deformylase; PurU_2 4687187 purU_2 12522372 purU_2 Pseudomonas putida BIRD-1 PurU_2 YP_005931978.1 4686336 R 931281 CDS YP_005931979.1 386013702 12522373 4687472..4687849 1 NC_017530.1 Transcriptional regulator MvaT, P16 subunit 4687849 12522373 PPUBIRD1_4196 Pseudomonas putida BIRD-1 Transcriptional regulator MvaT, P16 subunit YP_005931979.1 4687472 D 931281 CDS YP_005931980.1 386013703 12522374 complement(4687922..4689355) 1 NC_017530.1 exonuclease I; SbcB 4689355 sbcB 12522374 sbcB Pseudomonas putida BIRD-1 SbcB YP_005931980.1 4687922 R 931281 CDS YP_005931981.1 386013704 12522375 complement(4689413..4689772) 1 NC_017530.1 type IV pilus assembly PilZ 4689772 12522375 PPUBIRD1_4198 Pseudomonas putida BIRD-1 type IV pilus assembly PilZ YP_005931981.1 4689413 R 931281 CDS YP_005931982.1 386013705 12522376 complement(4689896..4690282) 1 NC_017530.1 hypothetical protein 4690282 12522376 PPUBIRD1_4199 Pseudomonas putida BIRD-1 hypothetical protein YP_005931982.1 4689896 R 931281 CDS YP_005931983.1 386013706 12522377 4690463..4691917 1 NC_017530.1 pyruvate kinase; PykA 4691917 pykA 12522377 pykA Pseudomonas putida BIRD-1 PykA YP_005931983.1 4690463 D 931281 CDS YP_005931984.1 386013707 12522378 complement(4692044..4693684) 1 NC_017530.1 60 kDa chaperonin; protein GroEL 4693684 groEL 12522378 groEL Pseudomonas putida BIRD-1 protein GroEL YP_005931984.1 4692044 R 931281 CDS YP_005931985.1 386013708 12522379 complement(4693733..4694026) 1 NC_017530.1 10 kDa chaperonin; GroES protein 4694026 groES 12522379 groES Pseudomonas putida BIRD-1 GroES protein YP_005931985.1 4693733 R 931281 CDS YP_005931986.1 386013709 12522380 complement(4694270..4694731) 1 NC_017530.1 FxsA protein 4694731 fxsA 12522380 fxsA Pseudomonas putida BIRD-1 FxsA protein YP_005931986.1 4694270 R 931281 CDS YP_005931987.1 386013710 12522381 complement(4694797..4695528) 1 NC_017530.1 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 4695528 12522381 PPUBIRD1_4204 Pseudomonas putida BIRD-1 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_005931987.1 4694797 R 931281 CDS YP_005931988.1 386013711 12522382 complement(4695611..4696552) 1 NC_017530.1 hypothetical protein 4696552 12522382 PPUBIRD1_4205 Pseudomonas putida BIRD-1 hypothetical protein YP_005931988.1 4695611 R 931281 CDS YP_005931989.1 386013712 12522383 4696786..4697139 1 NC_017530.1 hypothetical protein 4697139 12522383 PPUBIRD1_4206 Pseudomonas putida BIRD-1 hypothetical protein YP_005931989.1 4696786 D 931281 CDS YP_005931990.1 386013713 12522384 4697183..4698730 1 NC_017530.1 AmpG-related permease 4698730 12522384 PPUBIRD1_4207 Pseudomonas putida BIRD-1 AmpG-related permease YP_005931990.1 4697183 D 931281 CDS YP_005931991.1 386013714 12522385 complement(4698891..4700132) 1 NC_017530.1 Major facilitator transporter 4700132 12522385 PPUBIRD1_4208 Pseudomonas putida BIRD-1 Major facilitator transporter YP_005931991.1 4698891 R 931281 CDS YP_005931992.1 386013715 12522386 complement(4700340..4701119) 1 NC_017530.1 mechanosensitive ion channel protein MscS 4701119 12522386 PPUBIRD1_4209 Pseudomonas putida BIRD-1 mechanosensitive ion channel protein MscS YP_005931992.1 4700340 R 931281 CDS YP_005931993.1 386013716 12522387 complement(4701299..4701784) 1 NC_017530.1 hypothetical protein 4701784 12522387 PPUBIRD1_4210 Pseudomonas putida BIRD-1 hypothetical protein YP_005931993.1 4701299 R 931281 CDS YP_005931994.1 386013717 12522388 4701885..4702802 1 NC_017530.1 2-dehydropantoate 2-reductase 4702802 12522388 PPUBIRD1_4211 Pseudomonas putida BIRD-1 2-dehydropantoate 2-reductase YP_005931994.1 4701885 D 931281 CDS YP_005931995.1 386013718 12522389 4702840..4704870 1 NC_017530.1 Multi-sensor signal transduction histidine kinase 4704870 12522389 PPUBIRD1_4212 Pseudomonas putida BIRD-1 Multi-sensor signal transduction histidine kinase YP_005931995.1 4702840 D 931281 CDS YP_005931996.1 386013719 12522390 4704872..4705438 1 NC_017530.1 ATP--cobalamin adenosyltransferase 4705438 12522390 PPUBIRD1_4213 Pseudomonas putida BIRD-1 ATP--cobalamin adenosyltransferase YP_005931996.1 4704872 D 931281 CDS YP_005931997.1 386013720 12522391 complement(4705575..4706519) 1 NC_017530.1 hypothetical protein 4706519 12522391 PPUBIRD1_4214 Pseudomonas putida BIRD-1 hypothetical protein YP_005931997.1 4705575 R 931281 CDS YP_005931998.1 386013721 12522392 complement(4706516..4707148) 1 NC_017530.1 glutathione S-transferase 4707148 12522392 PPUBIRD1_4215 Pseudomonas putida BIRD-1 glutathione S-transferase YP_005931998.1 4706516 R 931281 CDS YP_005931999.1 386013722 12522393 complement(4707304..4708521) 1 NC_017530.1 Glutamate N-acetyltransferase; protein ArgJ 4708521 argJ 12522393 argJ Pseudomonas putida BIRD-1 protein ArgJ YP_005931999.1 4707304 R 931281 CDS YP_005932000.1 386013723 12522394 complement(4708704..4711439) 1 NC_017530.1 Protein translocase subunit secA; SecA_2 4711439 secA_2 12522394 secA_2 Pseudomonas putida BIRD-1 SecA_2 YP_005932000.1 4708704 R 931281 CDS YP_005932001.1 386013724 12522395 4711811..4712266 1 NC_017530.1 hypothetical protein 4712266 12522395 PPUBIRD1_4218 Pseudomonas putida BIRD-1 hypothetical protein YP_005932001.1 4711811 D 931281 CDS YP_005932002.1 386013725 12522396 complement(4712314..4713225) 1 NC_017530.1 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; LpxC 4713225 lpxC 12522396 lpxC Pseudomonas putida BIRD-1 LpxC YP_005932002.1 4712314 R 931281 CDS YP_005932003.1 386013726 12522397 complement(4713338..4714534) 1 NC_017530.1 Cell division protein ftsZ; protein FtsZ 4714534 ftsZ 12522397 ftsZ Pseudomonas putida BIRD-1 protein FtsZ YP_005932003.1 4713338 R 931281 CDS YP_005932004.1 386013727 12522398 complement(4714590..4715828) 1 NC_017530.1 Cell division protein ftsA; protein FtsA 4715828 ftsA 12522398 ftsA Pseudomonas putida BIRD-1 protein FtsA YP_005932004.1 4714590 R 931281 CDS YP_005932005.1 386013728 12522399 complement(4715867..4716736) 1 NC_017530.1 Polypeptide-transport-associated domain-containing protein 4716736 12522399 PPUBIRD1_4223 Pseudomonas putida BIRD-1 Polypeptide-transport-associated domain-containing protein YP_005932005.1 4715867 R 931281 CDS YP_005932006.1 386013729 12522400 complement(4716742..4717698) 1 NC_017530.1 D-alanine--D-alanine ligase B; Ddl 4717698 ddl 12522400 ddl Pseudomonas putida BIRD-1 Ddl YP_005932006.1 4716742 R 931281 CDS YP_005932007.1 386013730 12522401 complement(4717695..4719143) 1 NC_017530.1 UDP-N-acetylmuramate--L-alanine ligase; protein MurC 4719143 murC 12522401 murC Pseudomonas putida BIRD-1 protein MurC YP_005932007.1 4717695 R 931281 CDS YP_005932008.1 386013731 12522402 complement(4719136..4720215) 1 NC_017530.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; protein MurG 4720215 murG 12522402 murG Pseudomonas putida BIRD-1 protein MurG YP_005932008.1 4719136 R 931281 CDS YP_005932009.1 386013732 12522403 complement(4720205..4721419) 1 NC_017530.1 cell division protein FtsW 4721419 12522403 PPUBIRD1_4227 Pseudomonas putida BIRD-1 cell division protein FtsW YP_005932009.1 4720205 R 931281 CDS YP_005932010.1 386013733 12522404 complement(4721416..4722756) 1 NC_017530.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; protein MurD 4722756 murD 12522404 murD Pseudomonas putida BIRD-1 protein MurD YP_005932010.1 4721416 R 931281 CDS YP_005932011.1 386013734 12522405 complement(4722769..4723851) 1 NC_017530.1 Phospho-N-acetylmuramoyl-pentapeptide-transferase; MraY 4723851 mraY 12522405 mraY Pseudomonas putida BIRD-1 MraY YP_005932011.1 4722769 R 931281 CDS YP_005932012.1 386013735 12522406 complement(4723851..4725218) 1 NC_017530.1 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 4725218 12522406 PPUBIRD1_4230 Pseudomonas putida BIRD-1 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase YP_005932012.1 4723851 R 931281 CDS YP_005932013.1 386013736 12522407 complement(4725211..4726701) 1 NC_017530.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; protein MurE 4726701 murE 12522407 murE Pseudomonas putida BIRD-1 protein MurE YP_005932013.1 4725211 R 931281 CDS YP_005932014.1 386013737 12522408 complement(4726698..4728446) 1 NC_017530.1 peptidoglycan glycosyltransferase 4728446 12522408 PPUBIRD1_4232 Pseudomonas putida BIRD-1 peptidoglycan glycosyltransferase YP_005932014.1 4726698 R 931281 CDS YP_005932015.1 386013738 12522409 complement(4728443..4728691) 1 NC_017530.1 cell division protein FtsL 4728691 12522409 PPUBIRD1_4233 Pseudomonas putida BIRD-1 cell division protein FtsL YP_005932015.1 4728443 R 931281 CDS YP_005932016.1 386013739 12522410 complement(4728733..4729680) 1 NC_017530.1 S-adenosyl-L-methionine-dependent methyltransferase mraW; MraW 4729680 mraW 12522410 mraW Pseudomonas putida BIRD-1 MraW YP_005932016.1 4728733 R 931281 CDS YP_005932017.1 386013740 12522411 complement(4729677..4729955) 1 NC_017530.1 protein mraZ 4729955 12522411 PPUBIRD1_4235 Pseudomonas putida BIRD-1 protein mraZ YP_005932017.1 4729677 R 931281 CDS YP_005932018.1 386013741 12522412 complement(4730884..4731759) 1 NC_017530.1 Uroporphyrin-III C/tetrapyrrole methyltransferase 4731759 12522412 PPUBIRD1_4236 Pseudomonas putida BIRD-1 Uroporphyrin-III C/tetrapyrrole methyltransferase YP_005932018.1 4730884 R 931281 CDS YP_005932019.1 386013742 12522413 4731946..4733763 1 NC_017530.1 LppC family lipoprotein 4733763 12522413 PPUBIRD1_4237 Pseudomonas putida BIRD-1 LppC family lipoprotein YP_005932019.1 4731946 D 931281 CDS YP_005932020.1 386013743 12522414 4733763..4734134 1 NC_017530.1 hypothetical protein 4734134 12522414 PPUBIRD1_4238 Pseudomonas putida BIRD-1 hypothetical protein YP_005932020.1 4733763 D 931281 CDS YP_005932021.1 386013744 12522415 4734221..4734814 1 NC_017530.1 Phosphoheptose isomerase; protein GmhA 4734814 gmhA 12522415 gmhA Pseudomonas putida BIRD-1 protein GmhA YP_005932021.1 4734221 D 931281 CDS YP_005932022.1 386013745 12522416 4734820..4735389 1 NC_017530.1 Transport-associated protein 4735389 12522416 PPUBIRD1_4240 Pseudomonas putida BIRD-1 Transport-associated protein YP_005932022.1 4734820 D 931281 CDS YP_005932023.1 386013746 12522417 complement(4735449..4735880) 1 NC_017530.1 ClpXP protease specificity-enhancing factor; SspB 4735880 sspB 12522417 sspB Pseudomonas putida BIRD-1 SspB YP_005932023.1 4735449 R 931281 CDS YP_005932024.1 386013747 12522418 complement(4735891..4736514) 1 NC_017530.1 glutathione S-transferase 4736514 12522418 PPUBIRD1_4242 Pseudomonas putida BIRD-1 glutathione S-transferase YP_005932024.1 4735891 R 931281 CDS YP_005932025.1 386013748 12522419 complement(4736631..4737410) 1 NC_017530.1 ubiquinol--cytochrome c reductase, cytochrome c1; protein PetC 4737410 petC 12522419 petC Pseudomonas putida BIRD-1 protein PetC YP_005932025.1 4736631 R 931281 CDS YP_005932026.1 386013749 12522420 complement(4737410..4738624) 1 NC_017530.1 cytochrome b/b6 protein 4738624 12522420 PPUBIRD1_4244 Pseudomonas putida BIRD-1 cytochrome b/b6 protein YP_005932026.1 4737410 R 931281 CDS YP_005932027.1 386013750 12522421 complement(4738621..4739214) 1 NC_017530.1 ubiquinol-cytochrome c reductase, iron-sulfur subunit; PetA 4739214 petA 12522421 petA Pseudomonas putida BIRD-1 PetA YP_005932027.1 4738621 R 931281 CDS YP_005932028.1 386013751 12522422 complement(4739477..4739869) 1 NC_017530.1 30S ribosomal protein S9; protein RpsI 4739869 rpsI 12522422 rpsI Pseudomonas putida BIRD-1 protein RpsI YP_005932028.1 4739477 R 931281 CDS YP_005932029.1 386013752 12522423 complement(4739884..4740312) 1 NC_017530.1 50S ribosomal protein L13; protein RplM 4740312 rplM 12522423 rplM Pseudomonas putida BIRD-1 protein RplM YP_005932029.1 4739884 R 931281 CDS YP_005932030.1 386013753 12522424 4740571..4741611 1 NC_017530.1 Aldo/keto reductase 4741611 12522424 PPUBIRD1_4248 Pseudomonas putida BIRD-1 Aldo/keto reductase YP_005932030.1 4740571 D 931281 CDS YP_005932031.1 386013754 12522425 4741727..4742722 1 NC_017530.1 Helix-turn-helix domain-containing protein 4742722 12522425 PPUBIRD1_4249 Pseudomonas putida BIRD-1 Helix-turn-helix domain-containing protein YP_005932031.1 4741727 D 931281 CDS YP_005932032.1 386013755 12522426 complement(4742828..4743922) 1 NC_017530.1 AFG1 family ATPase 4743922 12522426 PPUBIRD1_4250 Pseudomonas putida BIRD-1 AFG1 family ATPase YP_005932032.1 4742828 R 931281 CDS YP_005932033.1 386013756 12522427 complement(4744088..4745437) 1 NC_017530.1 tryptophanyl-tRNA synthetase 4745437 12522427 PPUBIRD1_4251 Pseudomonas putida BIRD-1 tryptophanyl-tRNA synthetase YP_005932033.1 4744088 R 931281 CDS YP_005932034.1 386013757 12522428 complement(4745463..4746098) 1 NC_017530.1 Alpha/beta fold family hydrolase-like protein 4746098 12522428 PPUBIRD1_4252 Pseudomonas putida BIRD-1 Alpha/beta fold family hydrolase-like protein YP_005932034.1 4745463 R 931281 CDS YP_005932035.1 386013758 12522429 4746234..4746671 1 NC_017530.1 hypothetical protein 4746671 12522429 PPUBIRD1_4253 Pseudomonas putida BIRD-1 hypothetical protein YP_005932035.1 4746234 D 931281 CDS YP_005932036.1 386013759 12522430 complement(4746832..4748028) 1 NC_017530.1 Methionine gamma-lyase 4748028 12522430 PPUBIRD1_4254 Pseudomonas putida BIRD-1 Methionine gamma-lyase YP_005932036.1 4746832 R 931281 CDS YP_005932037.1 386013760 12522431 4748156..4748635 1 NC_017530.1 AsnC family transcriptional regulator 4748635 12522431 PPUBIRD1_4255 Pseudomonas putida BIRD-1 AsnC family transcriptional regulator YP_005932037.1 4748156 D 931281 CDS YP_005932038.1 386013761 12522432 complement(4748720..4750621) 1 NC_017530.1 Bifunctional enzyme cysN/cysC; bifunctional; CysNC 4750621 cysNC 12522432 cysNC Pseudomonas putida BIRD-1 CysNC YP_005932038.1 4748720 R 931281 CDS YP_005932039.1 386013762 12522433 complement(4750638..4751555) 1 NC_017530.1 Sulfate adenylyltransferase subunit 2; protein CysD 4751555 cysD 12522433 cysD Pseudomonas putida BIRD-1 protein CysD YP_005932039.1 4750638 R 931281 CDS YP_005932040.1 386013763 12522434 complement(4751779..4752537) 1 NC_017530.1 hypothetical protein 4752537 12522434 PPUBIRD1_4258 Pseudomonas putida BIRD-1 hypothetical protein YP_005932040.1 4751779 R 931281 CDS YP_005932041.1 386013764 12522435 4752706..4753866 1 NC_017530.1 2-alkenal reductase; AlgW 4753866 algW 12522435 algW Pseudomonas putida BIRD-1 AlgW YP_005932041.1 4752706 D 931281 CDS YP_005932042.1 386013765 12522436 complement(4753996..4754760) 1 NC_017530.1 general amino acid ABC transporter, ATP-binding protein; AapP 4754760 aapP 12522436 aapP Pseudomonas putida BIRD-1 AapP YP_005932042.1 4753996 R 931281 CDS YP_005932043.1 386013766 12522437 complement(4754771..4755868) 1 NC_017530.1 polar amino acid ABC transporter inner membrane subunit; protein AapM 4755868 aapM 12522437 aapM Pseudomonas putida BIRD-1 protein AapM YP_005932043.1 4754771 R 931281 CDS YP_005932044.1 386013767 12522438 complement(4755879..4757057) 1 NC_017530.1 polar amino acid ABC transporter inner membrane subunit; protein AapQ 4757057 aapQ 12522438 aapQ Pseudomonas putida BIRD-1 protein AapQ YP_005932044.1 4755879 R 931281 CDS YP_005932045.1 386013768 12522439 complement(4757125..4758153) 1 NC_017530.1 general amino acid ABC transporter, periplasmic binding protein; AapJ 4758153 aapJ 12522439 aapJ Pseudomonas putida BIRD-1 AapJ YP_005932045.1 4757125 R 931281 CDS YP_005932046.1 386013769 12522440 4758486..4759142 1 NC_017530.1 Carboxylesterase 4759142 12522440 PPUBIRD1_4265 Pseudomonas putida BIRD-1 Carboxylesterase YP_005932046.1 4758486 D 931281 CDS YP_005932047.1 386013770 12522441 4759243..4760685 1 NC_017530.1 ATP-dependent RNA helicase rhlB; RhlB 4760685 rhlB 12522441 rhlB Pseudomonas putida BIRD-1 RhlB YP_005932047.1 4759243 D 931281 CDS YP_005932048.1 386013771 12522442 complement(4760995..4761441) 1 NC_017530.1 molybdopterin biosynthesis MoaE protein; protein MoaE 4761441 moaE 12522442 moaE Pseudomonas putida BIRD-1 protein MoaE YP_005932048.1 4760995 R 931281 CDS YP_005932049.1 386013772 12522443 complement(4761444..4761689) 1 NC_017530.1 molybdopterin converting factor, subunit 1; MoaD 4761689 moaD 12522443 moaD Pseudomonas putida BIRD-1 MoaD YP_005932049.1 4761444 R 931281 CDS YP_005932050.1 386013773 12522444 complement(4761689..4762159) 1 NC_017530.1 molybdenum cofactor biosynthesis protein C; protein MoaC 4762159 moaC 12522444 moaC Pseudomonas putida BIRD-1 protein MoaC YP_005932050.1 4761689 R 931281 CDS YP_005932051.1 386013774 12522445 complement(4762296..4763690) 1 NC_017530.1 PhoH family protein 4763690 12522445 PPUBIRD1_4270 Pseudomonas putida BIRD-1 PhoH family protein YP_005932051.1 4762296 R 931281 CDS YP_005932052.1 386013775 12522446 complement(4763972..4765099) 1 NC_017530.1 polysaccharide deacetylase 4765099 12522446 PPUBIRD1_4271 Pseudomonas putida BIRD-1 polysaccharide deacetylase YP_005932052.1 4763972 R 931281 CDS YP_005932053.1 386013776 12522447 4765237..4766016 1 NC_017530.1 hypothetical protein 4766016 12522447 PPUBIRD1_4272 Pseudomonas putida BIRD-1 hypothetical protein YP_005932053.1 4765237 D 931281 CDS YP_005932054.1 386013777 12522448 4766860..4768176 1 NC_017530.1 GDP-mannose 6-dehydrogenase 4768176 12522448 PPUBIRD1_4273 Pseudomonas putida BIRD-1 GDP-mannose 6-dehydrogenase YP_005932054.1 4766860 D 931281 CDS YP_005932055.1 386013778 12522449 4768281..4769744 1 NC_017530.1 Glycosyltransferase alg8 4769744 12522449 PPUBIRD1_4274 Pseudomonas putida BIRD-1 Glycosyltransferase alg8 YP_005932055.1 4768281 D 931281 CDS YP_005932056.1 386013779 12522450 4769782..4770948 1 NC_017530.1 Alginate biosynthesis protein alg44 4770948 12522450 PPUBIRD1_4275 Pseudomonas putida BIRD-1 Alginate biosynthesis protein alg44 YP_005932056.1 4769782 D 931281 CDS YP_005932057.1 386013780 12522451 4770959..4772404 1 NC_017530.1 Alginate biosynthesis protein algK 4772404 12522451 PPUBIRD1_4276 Pseudomonas putida BIRD-1 Alginate biosynthesis protein algK YP_005932057.1 4770959 D 931281 CDS YP_005932058.1 386013781 12522452 4772401..4773879 1 NC_017530.1 Alginate production protein algE 4773879 12522452 PPUBIRD1_4277 Pseudomonas putida BIRD-1 Alginate production protein algE YP_005932058.1 4772401 D 931281 CDS YP_005932059.1 386013782 12522453 4773902..4775461 1 NC_017530.1 Poly(beta-D-mannuronate) C5 epimerase 4775461 12522453 PPUBIRD1_4278 Pseudomonas putida BIRD-1 Poly(beta-D-mannuronate) C5 epimerase YP_005932059.1 4773902 D 931281 CDS YP_005932060.1 386013783 12522454 4775475..4776914 1 NC_017530.1 Alginate biosynthesis protein algX 4776914 12522454 PPUBIRD1_4279 Pseudomonas putida BIRD-1 Alginate biosynthesis protein algX YP_005932060.1 4775475 D 931281 CDS YP_005932061.1 386013784 12522455 4776923..4778026 1 NC_017530.1 Alginate lyase; AlgL 4778026 algL 12522455 algL Pseudomonas putida BIRD-1 AlgL YP_005932061.1 4776923 D 931281 CDS YP_005932062.1 386013785 12522456 4778225..4779682 1 NC_017530.1 Probable poly(beta-D-mannuronate) O-acetylase; AlgI protein 4779682 algI 12522456 algI Pseudomonas putida BIRD-1 AlgI protein YP_005932062.1 4778225 D 931281 CDS YP_005932063.1 386013786 12522457 4779688..4780851 1 NC_017530.1 Alginate biosynthesis protein algJ; protein AlgJ 4780851 algJ 12522457 algJ Pseudomonas putida BIRD-1 protein AlgJ YP_005932063.1 4779688 D 931281 CDS YP_005932064.1 386013787 12522458 4780872..4781519 1 NC_017530.1 Alginate biosynthesis protein algF; AlgF 4781519 algF 12522458 algF Pseudomonas putida BIRD-1 AlgF YP_005932064.1 4780872 D 931281 CDS YP_005932065.1 386013788 12522459 4781552..4783009 1 NC_017530.1 Alginate biosynthesis protein algA; bifunctional; AlgA 4783009 algA 12522459 algA Pseudomonas putida BIRD-1 AlgA YP_005932065.1 4781552 D 931281 CDS YP_005932066.1 386013789 12522460 4783671..4784135 1 NC_017530.1 hypothetical protein 4784135 12522460 PPUBIRD1_4285 Pseudomonas putida BIRD-1 hypothetical protein YP_005932066.1 4783671 D 931281 CDS YP_005932067.1 386013790 12522461 4784257..4785069 1 NC_017530.1 short-chain dehydrogenase 4785069 12522461 PPUBIRD1_4286 Pseudomonas putida BIRD-1 short-chain dehydrogenase YP_005932067.1 4784257 D 931281 CDS YP_005932068.1 386013791 12522462 4785205..4785366 1 NC_017530.1 hypothetical protein 4785366 12522462 PPUBIRD1_4287 Pseudomonas putida BIRD-1 hypothetical protein YP_005932068.1 4785205 D 931281 CDS YP_005932069.1 386013792 12522463 complement(4785459..4786913) 1 NC_017530.1 TrpC; TrpC_2 4786913 trpC_2 12522463 trpC_2 Pseudomonas putida BIRD-1 TrpC_2 YP_005932069.1 4785459 R 931281 CDS YP_005932070.1 386013793 12522464 complement(4786910..4787992) 1 NC_017530.1 Secretion protein HlyD family protein 4787992 12522464 PPUBIRD1_4289 Pseudomonas putida BIRD-1 Secretion protein HlyD family protein YP_005932070.1 4786910 R 931281 CDS YP_005932071.1 386013794 12522465 complement(4788000..4789541) 1 NC_017530.1 TrpA; TrpA_2 4789541 trpA_2 12522465 trpA_2 Pseudomonas putida BIRD-1 TrpA_2 YP_005932071.1 4788000 R 931281 CDS YP_005932072.1 386013795 12522466 complement(4789672..4790577) 1 NC_017530.1 LysR family transcriptional regulator; TrpR 4790577 trpR 12522466 trpR Pseudomonas putida BIRD-1 TrpR YP_005932072.1 4789672 R 931281 CDS YP_005932073.1 386013796 12522467 4790796..4791248 1 NC_017530.1 UspA domain-containing protein 4791248 12522467 PPUBIRD1_4292 Pseudomonas putida BIRD-1 UspA domain-containing protein YP_005932073.1 4790796 D 931281 CDS YP_005932074.1 386013797 12522468 complement(4791320..4792180) 1 NC_017530.1 Secretion protein HlyD family protein 4792180 12522468 PPUBIRD1_4293 Pseudomonas putida BIRD-1 Secretion protein HlyD family protein YP_005932074.1 4791320 R 931281 CDS YP_005932075.1 386013798 12522469 complement(4792191..4792391) 1 NC_017530.1 hypothetical protein 4792391 12522469 PPUBIRD1_4294 Pseudomonas putida BIRD-1 hypothetical protein YP_005932075.1 4792191 R 931281 CDS YP_005932076.1 386013799 12522470 complement(4792381..4794558) 1 NC_017530.1 Fusaric acid resistance protein region 4794558 12522470 PPUBIRD1_4295 Pseudomonas putida BIRD-1 Fusaric acid resistance protein region YP_005932076.1 4792381 R 931281 CDS YP_005932077.1 386013800 12522471 complement(4794555..4796084) 1 NC_017530.1 RND efflux system outer membrane lipoprotein 4796084 12522471 PPUBIRD1_4296 Pseudomonas putida BIRD-1 RND efflux system outer membrane lipoprotein YP_005932077.1 4794555 R 931281 CDS YP_005932078.1 386013801 12522472 4796277..4797224 1 NC_017530.1 LysR family transcriptional regulator 4797224 12522472 PPUBIRD1_4297 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005932078.1 4796277 D 931281 CDS YP_005932079.1 386013802 12522473 4797401..4798375 1 NC_017530.1 bifunctional; 2-hydroxyacid dehydrogenase 4798375 12522473 PPUBIRD1_4298 Pseudomonas putida BIRD-1 2-hydroxyacid dehydrogenase YP_005932079.1 4797401 D 931281 CDS YP_005932080.1 386013803 12522474 complement(4798683..4799585) 1 NC_017530.1 hypothetical protein 4799585 12522474 PPUBIRD1_4299 Pseudomonas putida BIRD-1 hypothetical protein YP_005932080.1 4798683 R 931281 CDS YP_005932081.1 386013804 12522475 4799771..4800646 1 NC_017530.1 AraC family transcriptional regulator 4800646 12522475 PPUBIRD1_4300 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005932081.1 4799771 D 931281 CDS YP_005932082.1 386013805 12522476 complement(4800676..4803066) 1 NC_017530.1 TonB-dependent siderophore receptor 4803066 12522476 PPUBIRD1_4301 Pseudomonas putida BIRD-1 TonB-dependent siderophore receptor YP_005932082.1 4800676 R 931281 CDS YP_005932083.1 386013806 12522477 complement(4803266..4804246) 1 NC_017530.1 Anti-FecI sigma factor, FecR 4804246 12522477 PPUBIRD1_4302 Pseudomonas putida BIRD-1 Anti-FecI sigma factor, FecR YP_005932083.1 4803266 R 931281 CDS YP_005932084.1 386013807 12522478 complement(4804243..4804818) 1 NC_017530.1 ECF subfamily RNA polymerase sigma factor 4804818 12522478 PPUBIRD1_4303 Pseudomonas putida BIRD-1 ECF subfamily RNA polymerase sigma factor YP_005932084.1 4804243 R 931281 CDS YP_005932085.1 386013808 12522479 complement(4804824..4805150) 1 NC_017530.1 hypothetical protein 4805150 12522479 PPUBIRD1_4304 Pseudomonas putida BIRD-1 hypothetical protein YP_005932085.1 4804824 R 931281 CDS YP_005932086.1 386013809 12522480 complement(4805150..4806727) 1 NC_017530.1 PepSY-associated TM helix domain-containing protein 4806727 12522480 PPUBIRD1_4305 Pseudomonas putida BIRD-1 PepSY-associated TM helix domain-containing protein YP_005932086.1 4805150 R 931281 CDS YP_005932087.1 386013810 12522481 complement(4806724..4807029) 1 NC_017530.1 hypothetical protein 4807029 12522481 PPUBIRD1_4306 Pseudomonas putida BIRD-1 hypothetical protein YP_005932087.1 4806724 R 931281 CDS YP_005932088.1 386013811 12522482 4807286..4807633 1 NC_017530.1 hypothetical protein 4807633 12522482 PPUBIRD1_4307 Pseudomonas putida BIRD-1 hypothetical protein YP_005932088.1 4807286 D 931281 CDS YP_005932089.1 386013812 12522483 4807688..4808044 1 NC_017530.1 hypothetical protein 4808044 12522483 PPUBIRD1_4308 Pseudomonas putida BIRD-1 hypothetical protein YP_005932089.1 4807688 D 931281 CDS YP_005932090.1 386013813 12522484 complement(4808048..4808518) 1 NC_017530.1 Phosphate-starvation-inducible E 4808518 12522484 PPUBIRD1_4309 Pseudomonas putida BIRD-1 Phosphate-starvation-inducible E YP_005932090.1 4808048 R 931281 CDS YP_005932091.1 386013814 12522485 4809259..4809522 1 NC_017530.1 hypothetical protein 4809522 12522485 PPUBIRD1_4311 Pseudomonas putida BIRD-1 hypothetical protein YP_005932091.1 4809259 D 931281 CDS YP_005932092.1 386013815 12522486 complement(4809578..4810597) 1 NC_017530.1 leucine dehydrogenase 4810597 12522486 PPUBIRD1_4312 Pseudomonas putida BIRD-1 leucine dehydrogenase YP_005932092.1 4809578 R 931281 CDS YP_005932093.1 386013816 12522487 4810722..4811528 1 NC_017530.1 hypothetical protein 4811528 12522487 PPUBIRD1_4313 Pseudomonas putida BIRD-1 hypothetical protein YP_005932093.1 4810722 D 931281 CDS YP_005932094.1 386013817 12522488 complement(4811522..4812154) 1 NC_017530.1 Maleylacetoacetate isomerase 4812154 12522488 PPUBIRD1_4314 Pseudomonas putida BIRD-1 Maleylacetoacetate isomerase YP_005932094.1 4811522 R 931281 CDS YP_005932095.1 386013818 12522489 complement(4812167..4813459) 1 NC_017530.1 Fumarylacetoacetase 4813459 12522489 PPUBIRD1_4315 Pseudomonas putida BIRD-1 Fumarylacetoacetase YP_005932095.1 4812167 R 931281 CDS YP_005932096.1 386013819 12522490 complement(4813463..4814764) 1 NC_017530.1 homogentisate 1,2-dioxygenase 4814764 12522490 PPUBIRD1_4316 Pseudomonas putida BIRD-1 homogentisate 1,2-dioxygenase YP_005932096.1 4813463 R 931281 CDS YP_005932097.1 386013820 12522491 complement(4815641..4818781) 1 NC_017530.1 hypothetical protein 4818781 12522491 PPUBIRD1_4317 Pseudomonas putida BIRD-1 hypothetical protein YP_005932097.1 4815641 R 931281 CDS YP_005932098.1 386013821 12522492 complement(4819190..4820089) 1 NC_017530.1 Alpha/beta fold family hydrolase 4820089 12522492 PPUBIRD1_4318 Pseudomonas putida BIRD-1 Alpha/beta fold family hydrolase YP_005932098.1 4819190 R 931281 CDS YP_005932099.1 386013822 12522493 complement(4820272..4820958) 1 NC_017530.1 LrgB family protein 4820958 12522493 PPUBIRD1_4319 Pseudomonas putida BIRD-1 LrgB family protein YP_005932099.1 4820272 R 931281 CDS YP_005932100.1 386013823 12522494 complement(4820948..4821334) 1 NC_017530.1 LrgA family protein 4821334 12522494 PPUBIRD1_4320 Pseudomonas putida BIRD-1 LrgA family protein YP_005932100.1 4820948 R 931281 CDS YP_005932101.1 386013824 12522495 4821432..4822313 1 NC_017530.1 LysR family transcriptional regulator 4822313 12522495 PPUBIRD1_4321 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005932101.1 4821432 D 931281 CDS YP_005932102.1 386013825 12522496 complement(4822335..4822790) 1 NC_017530.1 flavodoxin; MioC 4822790 mioC 12522496 mioC Pseudomonas putida BIRD-1 MioC YP_005932102.1 4822335 R 931281 CDS YP_005932103.1 386013826 12522497 4822906..4823334 1 NC_017530.1 Putative PAS/PAC sensor protein 4823334 12522497 PPUBIRD1_4323 Pseudomonas putida BIRD-1 Putative PAS/PAC sensor protein YP_005932103.1 4822906 D 931281 CDS YP_005932104.1 386013827 12522498 4823394..4824011 1 NC_017530.1 hypothetical protein 4824011 12522498 PPUBIRD1_4324 Pseudomonas putida BIRD-1 hypothetical protein YP_005932104.1 4823394 D 931281 CDS YP_005932105.1 386013828 12522499 complement(4823996..4824937) 1 NC_017530.1 MerR family transcriptional regulator 4824937 12522499 PPUBIRD1_4325 Pseudomonas putida BIRD-1 MerR family transcriptional regulator YP_005932105.1 4823996 R 931281 CDS YP_005932106.1 386013829 12522500 4825151..4825711 1 NC_017530.1 hypothetical protein 4825711 12522500 PPUBIRD1_4326 Pseudomonas putida BIRD-1 hypothetical protein YP_005932106.1 4825151 D 931281 CDS YP_005932107.1 386013830 12522501 4825745..4826482 1 NC_017530.1 short-chain dehydrogenase 4826482 12522501 PPUBIRD1_4327 Pseudomonas putida BIRD-1 short-chain dehydrogenase YP_005932107.1 4825745 D 931281 CDS YP_005932108.1 386013831 12522502 4826492..4826788 1 NC_017530.1 hypothetical protein 4826788 12522502 PPUBIRD1_4328 Pseudomonas putida BIRD-1 hypothetical protein YP_005932108.1 4826492 D 931281 CDS YP_005932109.1 386013832 12522503 4826781..4827122 1 NC_017530.1 HopJ type III effector protein 4827122 12522503 PPUBIRD1_4329 Pseudomonas putida BIRD-1 HopJ type III effector protein YP_005932109.1 4826781 D 931281 CDS YP_005932110.1 386013833 12522504 complement(4827167..4828075) 1 NC_017530.1 hypothetical protein 4828075 12522504 PPUBIRD1_4330 Pseudomonas putida BIRD-1 hypothetical protein YP_005932110.1 4827167 R 931281 CDS YP_005932111.1 386013834 12522505 complement(4828220..4829431) 1 NC_017530.1 Putative reductase 4829431 12522505 PPUBIRD1_4331 Pseudomonas putida BIRD-1 Putative reductase YP_005932111.1 4828220 R 931281 CDS YP_005932112.1 386013835 12522506 4829733..4830911 1 NC_017530.1 Acetyl-CoA acetyltransferase 4830911 12522506 PPUBIRD1_4333 Pseudomonas putida BIRD-1 Acetyl-CoA acetyltransferase YP_005932112.1 4829733 D 931281 CDS YP_005932113.1 386013836 12522507 complement(4831344..4832168) 1 NC_017530.1 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 4832168 12522507 PPUBIRD1_4334 Pseudomonas putida BIRD-1 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_005932113.1 4831344 R 931281 CDS YP_005932114.1 386013837 12522508 complement(4833845..4834822) 1 NC_017530.1 Cobalamin synthesis protein, P47K 4834822 12522508 PPUBIRD1_4335 Pseudomonas putida BIRD-1 Cobalamin synthesis protein, P47K YP_005932114.1 4833845 R 931281 CDS YP_005932115.1 386013838 12522509 complement(4834900..4835097) 1 NC_017530.1 hypothetical protein 4835097 12522509 PPUBIRD1_4336 Pseudomonas putida BIRD-1 hypothetical protein YP_005932115.1 4834900 R 931281 CDS YP_005932116.1 386013839 12522510 complement(4835115..4837181) 1 NC_017530.1 Inner membrane protein yjiY; protein CstA 4837181 cstA 12522510 cstA Pseudomonas putida BIRD-1 protein CstA YP_005932116.1 4835115 R 931281 CDS YP_005932117.1 386013840 12522511 4837359..4837721 1 NC_017530.1 type IV pilus assembly PilZ 4837721 12522511 PPUBIRD1_4338 Pseudomonas putida BIRD-1 type IV pilus assembly PilZ YP_005932117.1 4837359 D 931281 CDS YP_005932118.1 386013841 12522512 4837985..4839502 1 NC_017530.1 uracil-xanthine permease 4839502 12522512 PPUBIRD1_4339 Pseudomonas putida BIRD-1 uracil-xanthine permease YP_005932118.1 4837985 D 931281 CDS YP_005932119.1 386013842 12522513 complement(4839538..4840908) 1 NC_017530.1 DNA repair protein radA homolog; protein RadA 4840908 radA 12522513 radA Pseudomonas putida BIRD-1 protein RadA YP_005932119.1 4839538 R 931281 CDS YP_005932120.1 386013843 12522514 4841085..4841504 1 NC_017530.1 Large-conductance mechanosensitive channel; MscL 4841504 mscL 12522514 mscL Pseudomonas putida BIRD-1 MscL YP_005932120.1 4841085 D 931281 CDS YP_005932121.1 386013844 12522515 complement(4841777..4842553) 1 NC_017530.1 Oxidoreductase FAD/NAD(P)-binding subunit 4842553 12522515 PPUBIRD1_4342 Pseudomonas putida BIRD-1 Oxidoreductase FAD/NAD(P)-binding subunit YP_005932121.1 4841777 R 931281 CDS YP_005932122.1 386013845 12522516 4842769..4843476 1 NC_017530.1 LuxR family transcriptional regulator 4843476 12522516 PPUBIRD1_4343 Pseudomonas putida BIRD-1 LuxR family transcriptional regulator YP_005932122.1 4842769 D 931281 CDS YP_005932123.1 386013846 12522517 4843573..4844697 1 NC_017530.1 Ribosomal RNA large subunit methyltransferase G 4844697 12522517 PPUBIRD1_4344 Pseudomonas putida BIRD-1 Ribosomal RNA large subunit methyltransferase G YP_005932123.1 4843573 D 931281 CDS YP_005932124.1 386013847 12522518 complement(4844803..4844958) 1 NC_017530.1 hypothetical protein 4844958 12522518 PPUBIRD1_4345 Pseudomonas putida BIRD-1 hypothetical protein YP_005932124.1 4844803 R 931281 CDS YP_005932125.1 386013848 12522519 complement(4844968..4845975) 1 NC_017530.1 Cytochrome d ubiquinol oxidase, subunit II 4845975 12522519 PPUBIRD1_4346 Pseudomonas putida BIRD-1 Cytochrome d ubiquinol oxidase, subunit II YP_005932125.1 4844968 R 931281 CDS YP_005932126.1 386013849 12522520 complement(4845979..4847382) 1 NC_017530.1 ubiquinol oxidase subunit I, cyanide insensitive; CioA 4847382 cioA 12522520 cioA Pseudomonas putida BIRD-1 CioA YP_005932126.1 4845979 R 931281 CDS YP_005932127.1 386013850 12522521 4847759..4848979 1 NC_017530.1 Major facilitator superfamily MFS_1 4848979 12522521 PPUBIRD1_4348 Pseudomonas putida BIRD-1 Major facilitator superfamily MFS_1 YP_005932127.1 4847759 D 931281 CDS YP_005932128.1 386013851 12522522 4849209..4850504 1 NC_017530.1 xanthine/uracil/vitamin C permease 4850504 12522522 PPUBIRD1_4349 Pseudomonas putida BIRD-1 xanthine/uracil/vitamin C permease YP_005932128.1 4849209 D 931281 CDS YP_005932129.1 386013852 12522523 4850501..4851586 1 NC_017530.1 tRNA (uracil-5-)-methyltransferase; protein TrmA 4851586 trmA 12522523 trmA Pseudomonas putida BIRD-1 protein TrmA YP_005932129.1 4850501 D 931281 CDS YP_005932130.1 386013853 12522524 complement(4851737..4852342) 1 NC_017530.1 protocatechuate 3,4-dioxygenase, alpha subunit; PcaG 4852342 pcaG 12522524 pcaG Pseudomonas putida BIRD-1 PcaG YP_005932130.1 4851737 R 931281 CDS YP_005932131.1 386013854 12522525 complement(4852353..4853072) 1 NC_017530.1 protocatechuate 3,4-dioxygenase, beta subunit; PcaH 4853072 pcaH 12522525 pcaH Pseudomonas putida BIRD-1 PcaH YP_005932131.1 4852353 R 931281 CDS YP_005932132.1 386013855 12522526 4853273..4854157 1 NC_017530.1 Metallopeptidase, zinc binding protein 4854157 12522526 PPUBIRD1_4353 Pseudomonas putida BIRD-1 Metallopeptidase, zinc binding protein YP_005932132.1 4853273 D 931281 CDS YP_005932133.1 386013856 12522527 4854330..4856249 1 NC_017530.1 methyl-accepting chemotaxis sensory transducer 4856249 12522527 PPUBIRD1_4354 Pseudomonas putida BIRD-1 methyl-accepting chemotaxis sensory transducer YP_005932133.1 4854330 D 931281 CDS YP_005932134.1 386013857 12522528 complement(4856388..4858055) 1 NC_017530.1 gamma-glutamyltranspeptidase 4858055 12522528 PPUBIRD1_4355 Pseudomonas putida BIRD-1 gamma-glutamyltranspeptidase YP_005932134.1 4856388 R 931281 CDS YP_005932135.1 386013858 12522529 complement(4858173..4859069) 1 NC_017530.1 LysR family transcriptional regulator 4859069 12522529 PPUBIRD1_4356 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005932135.1 4858173 R 931281 CDS YP_005932136.1 386013859 12522530 complement(4859253..4859843) 1 NC_017530.1 NAD(P)H dehydrogenase (quinone) 4859843 12522530 PPUBIRD1_4357 Pseudomonas putida BIRD-1 NAD(P)H dehydrogenase (quinone) YP_005932136.1 4859253 R 931281 CDS YP_005932137.1 386013860 12522531 4860007..4860321 1 NC_017530.1 antibiotic biosynthesis monooxygenase 4860321 12522531 PPUBIRD1_4358 Pseudomonas putida BIRD-1 antibiotic biosynthesis monooxygenase YP_005932137.1 4860007 D 931281 CDS YP_005932138.1 386013861 12522532 complement(4860311..4861075) 1 NC_017530.1 hypothetical protein 4861075 12522532 PPUBIRD1_4359 Pseudomonas putida BIRD-1 hypothetical protein YP_005932138.1 4860311 R 931281 CDS YP_005932139.1 386013862 12522533 4861153..4862034 1 NC_017530.1 LysR family transcriptional regulator 4862034 12522533 PPUBIRD1_4360 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005932139.1 4861153 D 931281 CDS YP_005932140.1 386013863 12522534 complement(4862137..4862412) 1 NC_017530.1 hypothetical protein 4862412 12522534 PPUBIRD1_4361 Pseudomonas putida BIRD-1 hypothetical protein YP_005932140.1 4862137 R 931281 CDS YP_005932141.1 386013864 12522535 4862483..4863412 1 NC_017530.1 Cation diffusion facilitator family transporter 4863412 12522535 PPUBIRD1_4362 Pseudomonas putida BIRD-1 Cation diffusion facilitator family transporter YP_005932141.1 4862483 D 931281 CDS YP_005932142.1 386013865 12522536 4863509..4863853 1 NC_017530.1 hypothetical protein 4863853 12522536 PPUBIRD1_4363 Pseudomonas putida BIRD-1 hypothetical protein YP_005932142.1 4863509 D 931281 CDS YP_005932143.1 386013866 12522537 complement(4864046..4864933) 1 NC_017530.1 3-hydroxyisobutyrate dehydrogenase; MmsB 4864933 mmsB 12522537 mmsB Pseudomonas putida BIRD-1 MmsB YP_005932143.1 4864046 R 931281 CDS YP_005932144.1 386013867 12522538 complement(4864944..4866470) 1 NC_017530.1 bifunctional; Methylmalonate-semialdehyde dehydrogenase 4866470 12522538 PPUBIRD1_4365 Pseudomonas putida BIRD-1 Methylmalonate-semialdehyde dehydrogenase YP_005932144.1 4864944 R 931281 CDS YP_005932145.1 386013868 12522539 4866603..4867553 1 NC_017530.1 LysR family transcriptional regulator 4867553 12522539 PPUBIRD1_4366 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005932145.1 4866603 D 931281 CDS YP_005932146.1 386013869 12522540 complement(4867684..4868172) 1 NC_017530.1 OmpA/MotB domain-containing protein 4868172 12522540 PPUBIRD1_4368 Pseudomonas putida BIRD-1 OmpA/MotB domain-containing protein YP_005932146.1 4867684 R 931281 CDS YP_005932147.1 386013870 12522541 complement(4868180..4869451) 1 NC_017530.1 diguanylate cyclase 4869451 12522541 PPUBIRD1_4369 Pseudomonas putida BIRD-1 diguanylate cyclase YP_005932147.1 4868180 R 931281 CDS YP_005932148.1 386013871 12522542 complement(4869448..4870014) 1 NC_017530.1 hypothetical protein 4870014 12522542 PPUBIRD1_4370 Pseudomonas putida BIRD-1 hypothetical protein YP_005932148.1 4869448 R 931281 CDS YP_005932149.1 386013872 12522543 complement(4870115..4872190) 1 NC_017530.1 exodeoxyribonuclease V, alpha subunit; recombinase D 4872190 recD 12522543 recD Pseudomonas putida BIRD-1 recombinase D YP_005932149.1 4870115 R 931281 CDS YP_005932150.1 386013873 12522544 complement(4872187..4873227) 1 NC_017530.1 Exodeoxyribonuclease V, beta subunit 4873227 12522544 PPUBIRD1_4372 Pseudomonas putida BIRD-1 Exodeoxyribonuclease V, beta subunit YP_005932150.1 4872187 R 931281 CDS YP_005932151.1 386013874 12522545 complement(4873236..4875860) 1 NC_017530.1 exodeoxyribonuclease V, beta subunit; recombinase B 4875860 recB 12522545 recB Pseudomonas putida BIRD-1 recombinase B YP_005932151.1 4873236 R 931281 CDS YP_005932152.1 386013875 12522546 complement(4875857..4879339) 1 NC_017530.1 exodeoxyribonuclease V, gamma subunit; recombinase C 4879339 recC 12522546 recC Pseudomonas putida BIRD-1 recombinase C YP_005932152.1 4875857 R 931281 CDS YP_005932153.1 386013876 12522552 complement(4885706..4886317) 1 NC_017530.1 Sulfoxide reductase heme-binding subunit yedZ 4886317 12522552 PPUBIRD1_4375 Pseudomonas putida BIRD-1 Sulfoxide reductase heme-binding subunit yedZ YP_005932153.1 4885706 R 931281 CDS YP_005932154.1 386013877 12522553 complement(4886317..4887330) 1 NC_017530.1 Sulfoxide reductase catalytic subunit yedY 4887330 12522553 PPUBIRD1_4376 Pseudomonas putida BIRD-1 Sulfoxide reductase catalytic subunit yedY YP_005932154.1 4886317 R 931281 CDS YP_005932155.1 386013878 12522554 complement(4887410..4888261) 1 NC_017530.1 CDP-diacylglycerol--serine O-phosphatidyltransferase; PssA_2 4888261 pssA_2 12522554 pssA_2 Pseudomonas putida BIRD-1 PssA_2 YP_005932155.1 4887410 R 931281 CDS YP_005932156.1 386013879 12522556 complement(4888412..4889428) 1 NC_017530.1 Ketol-acid reductoisomerase; protein IlvC 4889428 ilvC 12522556 ilvC Pseudomonas putida BIRD-1 protein IlvC YP_005932156.1 4888412 R 931281 CDS YP_005932157.1 386013880 12522558 complement(4889485..4889976) 1 NC_017530.1 acetolactate synthase 3 regulatory subunit; protein IlvH 4889976 ilvH 12522558 ilvH Pseudomonas putida BIRD-1 protein IlvH YP_005932157.1 4889485 R 931281 CDS YP_005932158.1 386013881 12522560 complement(4889978..4891678) 1 NC_017530.1 Acetolactate synthase isozyme 3 large subunit 4891678 12522560 PPUBIRD1_4380 Pseudomonas putida BIRD-1 Acetolactate synthase isozyme 3 large subunit YP_005932158.1 4889978 R 931281 CDS YP_005932159.1 386013882 12522562 complement(4892111..4892446) 1 NC_017530.1 hypothetical protein 4892446 12522562 PPUBIRD1_4381 Pseudomonas putida BIRD-1 hypothetical protein YP_005932159.1 4892111 R 931281 CDS YP_005932160.1 386013883 12522564 complement(4892443..4893216) 1 NC_017530.1 hypothetical protein 4893216 12522564 PPUBIRD1_4382 Pseudomonas putida BIRD-1 hypothetical protein YP_005932160.1 4892443 R 931281 CDS YP_005932161.1 386013884 12522565 complement(4893244..4895490) 1 NC_017530.1 penicillin-binding protein 1B; protein MrcB 4895490 mrcB 12522565 mrcB Pseudomonas putida BIRD-1 protein MrcB YP_005932161.1 4893244 R 931281 CDS YP_005932162.1 386013885 12522566 4895681..4897243 1 NC_017530.1 hypothetical protein 4897243 12522566 PPUBIRD1_4384 Pseudomonas putida BIRD-1 hypothetical protein YP_005932162.1 4895681 D 931281 CDS YP_005932163.1 386013886 12522567 4897401..4897703 1 NC_017530.1 TfoX domain-containing protein 4897703 12522567 PPUBIRD1_4385 Pseudomonas putida BIRD-1 TfoX domain-containing protein YP_005932163.1 4897401 D 931281 CDS YP_005932164.1 386013887 12522568 complement(4897859..4898743) 1 NC_017530.1 hypothetical protein 4898743 12522568 PPUBIRD1_4386 Pseudomonas putida BIRD-1 hypothetical protein YP_005932164.1 4897859 R 931281 CDS YP_005932165.1 386013888 12522569 complement(4898846..4899613) 1 NC_017530.1 Hemin import ATP-binding protein hmuV; HmuV 4899613 hmuV 12522569 hmuV Pseudomonas putida BIRD-1 HmuV YP_005932165.1 4898846 R 931281 CDS YP_005932166.1 386013889 12522570 complement(4899613..4900650) 1 NC_017530.1 Transport system permease protein 4900650 12522570 PPUBIRD1_4388 Pseudomonas putida BIRD-1 Transport system permease protein YP_005932166.1 4899613 R 931281 CDS YP_005932167.1 386013890 12522571 complement(4900647..4901531) 1 NC_017530.1 Periplasmic binding protein 4901531 12522571 PPUBIRD1_4389 Pseudomonas putida BIRD-1 Periplasmic binding protein YP_005932167.1 4900647 R 931281 CDS YP_005932168.1 386013891 12522572 4901680..4901997 1 NC_017530.1 Rieske (2Fe-2S) domain-containing protein 4901997 12522572 PPUBIRD1_4390 Pseudomonas putida BIRD-1 Rieske (2Fe-2S) domain-containing protein YP_005932168.1 4901680 D 931281 CDS YP_005932169.1 386013892 12522573 complement(4901987..4902700) 1 NC_017530.1 Sugar fermentation stimulation protein homolog; SfsA protein 4902700 sfsA 12522573 sfsA Pseudomonas putida BIRD-1 SfsA protein YP_005932169.1 4901987 R 931281 CDS YP_005932170.1 386013893 12522574 complement(4902700..4903872) 1 NC_017530.1 Aspartate aminotransferase 4903872 12522574 PPUBIRD1_4392 Pseudomonas putida BIRD-1 Aspartate aminotransferase YP_005932170.1 4902700 R 931281 CDS YP_005932171.1 386013894 12522575 4904083..4904529 1 NC_017530.1 C4-type zinc finger DksA/TraR family protein 4904529 12522575 PPUBIRD1_4393 Pseudomonas putida BIRD-1 C4-type zinc finger DksA/TraR family protein YP_005932171.1 4904083 D 931281 CDS YP_005932172.1 386013895 12522576 4904578..4905480 1 NC_017530.1 glutamyl-Q tRNA(Asp) synthetase 4905480 12522576 PPUBIRD1_4394 Pseudomonas putida BIRD-1 glutamyl-Q tRNA(Asp) synthetase YP_005932172.1 4904578 D 931281 CDS YP_005932173.1 386013896 12522577 4905726..4905902 1 NC_017530.1 hypothetical protein 4905902 12522577 PPUBIRD1_4395 Pseudomonas putida BIRD-1 hypothetical protein YP_005932173.1 4905726 D 931281 CDS YP_005932174.1 386013897 12522578 4905892..4908861 1 NC_017530.1 Multi-sensor signal transduction histidine kinase 4908861 12522578 PPUBIRD1_4396 Pseudomonas putida BIRD-1 Multi-sensor signal transduction histidine kinase YP_005932174.1 4905892 D 931281 CDS YP_005932175.1 386013898 12522579 4908866..4910308 1 NC_017530.1 Putative two component, sigma54 specific, transcriptional regulator, Fis family 4910308 12522579 PPUBIRD1_4397 Pseudomonas putida BIRD-1 Putative two component, sigma54 specific, transcriptional regulator, Fis family YP_005932175.1 4908866 D 931281 CDS YP_005932176.1 386013899 12522580 4911058..4912440 1 NC_017530.1 polynucleotide adenylyltransferase; PcnB 4912440 pcnB 12522580 pcnB Pseudomonas putida BIRD-1 PcnB YP_005932176.1 4911058 D 931281 CDS YP_005932177.1 386013900 12522581 4912437..4912916 1 NC_017530.1 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; protein FolK 4912916 folK 12522581 folK Pseudomonas putida BIRD-1 protein FolK YP_005932177.1 4912437 D 931281 CDS YP_005932178.1 386013901 12522582 4913179..4913979 1 NC_017530.1 3-methyl-2-oxobutanoate hydroxymethyltransferase; PanB 4913979 panB 12522582 panB Pseudomonas putida BIRD-1 PanB YP_005932178.1 4913179 D 931281 CDS YP_005932179.1 386013902 12522583 4913976..4914839 1 NC_017530.1 Pantothenate synthetase; protein PanC 4914839 panC 12522583 panC Pseudomonas putida BIRD-1 protein PanC YP_005932179.1 4913976 D 931281 CDS YP_005932180.1 386013903 12522584 4915048..4916712 1 NC_017530.1 Glucose-6-phosphate isomerase 2; hypothetical protein 4916712 pgi 12522584 pgi Pseudomonas putida BIRD-1 hypothetical protein YP_005932180.1 4915048 D 931281 CDS YP_005932181.1 386013904 12522585 4916893..4918827 1 NC_017530.1 Acetyl-coenzyme A synthetase 2 4918827 12522585 PPUBIRD1_4403 Pseudomonas putida BIRD-1 Acetyl-coenzyme A synthetase 2 YP_005932181.1 4916893 D 931281 CDS YP_005932182.1 386013905 12522586 4918870..4919739 1 NC_017530.1 hypothetical protein 4919739 12522586 PPUBIRD1_4404 Pseudomonas putida BIRD-1 hypothetical protein YP_005932182.1 4918870 D 931281 CDS YP_005932183.1 386013906 12522587 4919818..4922754 1 NC_017530.1 hypothetical protein 4922754 12522587 PPUBIRD1_4405 Pseudomonas putida BIRD-1 hypothetical protein YP_005932183.1 4919818 D 931281 CDS YP_005932184.1 386013907 12522588 complement(4922858..4923271) 1 NC_017530.1 Glyoxalase/bleomycin resistance protein/dioxygenase 4923271 12522588 PPUBIRD1_4406 Pseudomonas putida BIRD-1 Glyoxalase/bleomycin resistance protein/dioxygenase YP_005932184.1 4922858 R 931281 CDS YP_005932185.1 386013908 12522589 4923332..4923634 1 NC_017530.1 antibiotic biosynthesis monooxygenase 4923634 12522589 PPUBIRD1_4407 Pseudomonas putida BIRD-1 antibiotic biosynthesis monooxygenase YP_005932185.1 4923332 D 931281 CDS YP_005932186.1 386013909 12522590 complement(4923711..4924061) 1 NC_017530.1 Transport-associated protein 4924061 12522590 PPUBIRD1_4408 Pseudomonas putida BIRD-1 Transport-associated protein YP_005932186.1 4923711 R 931281 CDS YP_005932187.1 386013910 12522591 complement(4924323..4926428) 1 NC_017530.1 Polyribonucleotide nucleotidyltransferase 4926428 12522591 PPUBIRD1_4409 Pseudomonas putida BIRD-1 Polyribonucleotide nucleotidyltransferase YP_005932187.1 4924323 R 931281 CDS YP_005932188.1 386013911 12522592 complement(4926679..4926948) 1 NC_017530.1 ribosomal protein S15; protein RpsO 4926948 rpsO 12522592 rpsO Pseudomonas putida BIRD-1 protein RpsO YP_005932188.1 4926679 R 931281 CDS YP_005932189.1 386013912 12522593 complement(4927096..4928013) 1 NC_017530.1 tRNA pseudouridine synthase B; protein TruB 4928013 truB 12522593 truB Pseudomonas putida BIRD-1 protein TruB YP_005932189.1 4927096 R 931281 CDS YP_005932190.1 386013913 12522594 complement(4928017..4928415) 1 NC_017530.1 Ribosome-binding factor A; protein RbfA 4928415 rbfA 12522594 rbfA Pseudomonas putida BIRD-1 protein RbfA YP_005932190.1 4928017 R 931281 CDS YP_005932191.1 386013914 12522595 complement(4928532..4931060) 1 NC_017530.1 Translation initiation factor IF-2; InfB 4931060 infB 12522595 infB Pseudomonas putida BIRD-1 InfB YP_005932191.1 4928532 R 931281 CDS YP_005932192.1 386013915 12522596 complement(4931088..4932569) 1 NC_017530.1 transcription elongation factor NusA; protein NusA 4932569 nusA 12522596 nusA Pseudomonas putida BIRD-1 protein NusA YP_005932192.1 4931088 R 931281 CDS YP_005932193.1 386013916 12522597 complement(4932629..4933138) 1 NC_017530.1 Ribosome maturation factor rimP 4933138 12522597 PPUBIRD1_4415 Pseudomonas putida BIRD-1 Ribosome maturation factor rimP YP_005932193.1 4932629 R 931281 CDS YP_005932194.1 386013917 12522600 complement(4933501..4933617) 1 NC_017530.1 preprotein translocase subunit SecG; protein SecG 4933617 secG 12522600 secG Pseudomonas putida BIRD-1 protein SecG YP_005932194.1 4933501 R 931281 CDS YP_005932195.1 386013918 12522601 complement(4933904..4934647) 1 NC_017530.1 Triosephosphate isomerase; TpiA protein 4934647 tpiA 12522601 tpiA Pseudomonas putida BIRD-1 TpiA protein YP_005932195.1 4933904 R 931281 CDS YP_005932196.1 386013919 12522602 complement(4934725..4936065) 1 NC_017530.1 Phosphoglucosamine mutase; protein GlmM 4936065 glmM 12522602 glmM Pseudomonas putida BIRD-1 protein GlmM YP_005932196.1 4934725 R 931281 CDS YP_005932197.1 386013920 12522603 complement(4936082..4936924) 1 NC_017530.1 dihydropteroate synthase; protein FolP 4936924 folP 12522603 folP Pseudomonas putida BIRD-1 protein FolP YP_005932197.1 4936082 R 931281 CDS YP_005932198.1 386013921 12522604 complement(4936942..4938846) 1 NC_017530.1 Cell division protease ftsH; protein FtsH 4938846 ftsH 12522604 ftsH Pseudomonas putida BIRD-1 protein FtsH YP_005932198.1 4936942 R 931281 CDS YP_005932199.1 386013922 12522605 complement(4939053..4939676) 1 NC_017530.1 ribosomal RNA large subunit methyltransferase E 4939676 12522605 PPUBIRD1_4421 Pseudomonas putida BIRD-1 ribosomal RNA large subunit methyltransferase E YP_005932199.1 4939053 R 931281 CDS YP_005932200.1 386013923 12522607 4939779..4940087 1 NC_017530.1 hypothetical protein 4940087 12522607 PPUBIRD1_4422 Pseudomonas putida BIRD-1 hypothetical protein YP_005932200.1 4939779 D 931281 CDS YP_005932201.1 386013924 12522609 complement(4940100..4940450) 1 NC_017530.1 hypothetical protein 4940450 12522609 PPUBIRD1_4423 Pseudomonas putida BIRD-1 hypothetical protein YP_005932201.1 4940100 R 931281 CDS YP_005932202.1 386013925 12522610 complement(4940527..4941009) 1 NC_017530.1 Transcription elongation factor greA; protein GreA 4941009 greA 12522610 greA Pseudomonas putida BIRD-1 protein GreA YP_005932202.1 4940527 R 931281 CDS YP_005932203.1 386013926 12522611 complement(4941006..4944236) 1 NC_017530.1 Carbamoyl-phosphate synthase large chain; CarB protein 4944236 carB 12522611 carB Pseudomonas putida BIRD-1 CarB protein YP_005932203.1 4941006 R 931281 CDS YP_005932204.1 386013927 12522612 complement(4944333..4945469) 1 NC_017530.1 carbamoyl-phosphate synthase small chain 4945469 12522612 PPUBIRD1_4426 Pseudomonas putida BIRD-1 carbamoyl-phosphate synthase small chain YP_005932204.1 4944333 R 931281 CDS YP_005932205.1 386013928 12522613 complement(4945796..4946599) 1 NC_017530.1 Dihydrodipicolinate reductase 4946599 12522613 PPUBIRD1_4427 Pseudomonas putida BIRD-1 Dihydrodipicolinate reductase YP_005932205.1 4945796 R 931281 CDS YP_005932206.1 386013929 12522614 complement(4946613..4947740) 1 NC_017530.1 Chaperone protein dnaJ; DnaJ protein 4947740 dnaJ 12522614 dnaJ Pseudomonas putida BIRD-1 DnaJ protein YP_005932206.1 4946613 R 931281 CDS YP_005932207.1 386013930 12522615 complement(4947938..4949863) 1 NC_017530.1 Chaperone protein dnaK; DnaK protein 4949863 dnaK 12522615 dnaK Pseudomonas putida BIRD-1 DnaK protein YP_005932207.1 4947938 R 931281 CDS YP_005932208.1 386013931 12522616 complement(4949965..4950522) 1 NC_017530.1 Protein grpE; GrpE 4950522 grpE 12522616 grpE Pseudomonas putida BIRD-1 GrpE YP_005932208.1 4949965 R 931281 CDS YP_005932209.1 386013932 12522617 4950715..4952388 1 NC_017530.1 DNA repair protein RecN 4952388 12522617 PPUBIRD1_4432 Pseudomonas putida BIRD-1 DNA repair protein RecN YP_005932209.1 4950715 D 931281 CDS YP_005932210.1 386013933 12522618 complement(4952578..4952982) 1 NC_017530.1 ferric uptake regulator, Fur family; Fur family ferric uptake regulator 4952982 fur 12522618 fur Pseudomonas putida BIRD-1 Fur family ferric uptake regulator YP_005932210.1 4952578 R 931281 CDS YP_005932211.1 386013934 12522619 4953254..4953616 1 NC_017530.1 SmpA/OmlA domain-containing protein 4953616 12522619 PPUBIRD1_4434 Pseudomonas putida BIRD-1 SmpA/OmlA domain-containing protein YP_005932211.1 4953254 D 931281 CDS YP_005932212.1 386013935 12522620 complement(4953680..4954114) 1 NC_017530.1 Cyclase/dehydrase 4954114 12522620 PPUBIRD1_4435 Pseudomonas putida BIRD-1 Cyclase/dehydrase YP_005932212.1 4953680 R 931281 CDS YP_005932213.1 386013936 12522621 4954278..4954760 1 NC_017530.1 SsrA-binding protein; protein SmpB 4954760 smpB 12522621 smpB Pseudomonas putida BIRD-1 protein SmpB YP_005932213.1 4954278 D 931281 CDS YP_005932214.1 386013937 12522622 complement(4954924..4955691) 1 NC_017530.1 GntR family transcriptional regulator 4955691 12522622 PPUBIRD1_4437 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005932214.1 4954924 R 931281 CDS YP_005932215.1 386013938 12522623 4955993..4957618 1 NC_017530.1 L-lactate transport; LctP 4957618 lctP 12522623 lctP Pseudomonas putida BIRD-1 LctP YP_005932215.1 4955993 D 931281 CDS YP_005932216.1 386013939 12522624 4957681..4958826 1 NC_017530.1 L-lactate dehydrogenase; protein LldD 4958826 lldD 12522624 lldD Pseudomonas putida BIRD-1 protein LldD YP_005932216.1 4957681 D 931281 CDS YP_005932217.1 386013940 12522625 4958902..4961712 1 NC_017530.1 D-lactate dehydrogenase 4961712 12522625 PPUBIRD1_4440 Pseudomonas putida BIRD-1 D-lactate dehydrogenase YP_005932217.1 4958902 D 931281 CDS YP_005932218.1 386013941 12522626 4962162..4962449 1 NC_017530.1 hypothetical protein 4962449 12522626 PPUBIRD1_4441 Pseudomonas putida BIRD-1 hypothetical protein YP_005932218.1 4962162 D 931281 CDS YP_005932219.1 386013942 12522627 complement(4963147..4963425) 1 NC_017530.1 transposase; TnpA protein 4963425 tnpA 12522627 tnpA Pseudomonas putida BIRD-1 TnpA protein YP_005932219.1 4963147 R 931281 CDS YP_005932220.1 386013943 12522628 complement(4963454..4963999) 1 NC_017530.1 putative threonine efflux protein; Tep 4963999 tep 12522628 tep Pseudomonas putida BIRD-1 Tep YP_005932220.1 4963454 R 931281 CDS YP_005932221.1 386013944 12522629 4964435..4965337 1 NC_017530.1 LysR family transcriptional regulator 4965337 12522629 PPUBIRD1_4445 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005932221.1 4964435 D 931281 CDS YP_005932222.1 386013945 12522630 4965813..4965998 1 NC_017530.1 hypothetical protein 4965998 12522630 PPUBIRD1_4446 Pseudomonas putida BIRD-1 hypothetical protein YP_005932222.1 4965813 D 931281 CDS YP_005932223.1 386013946 12522631 4966071..4966334 1 NC_017530.1 hypothetical protein 4966334 12522631 PPUBIRD1_4447 Pseudomonas putida BIRD-1 hypothetical protein YP_005932223.1 4966071 D 931281 CDS YP_005932224.1 386013947 12522632 complement(4966398..4966595) 1 NC_017530.1 hypothetical protein 4966595 12522632 PPUBIRD1_4448 Pseudomonas putida BIRD-1 hypothetical protein YP_005932224.1 4966398 R 931281 CDS YP_005932225.1 386013948 12522633 4968047..4970410 1 NC_017530.1 Type I restriction enzyme EcoAI R protein; HsdR protein 4970410 hsdR 12522633 hsdR Pseudomonas putida BIRD-1 HsdR protein YP_005932225.1 4968047 D 931281 CDS YP_005932226.1 386013949 12522634 4970511..4971980 1 NC_017530.1 Type I restriction enzyme EcoEI M protein; HsdM 4971980 hsdM 12522634 hsdM Pseudomonas putida BIRD-1 HsdM YP_005932226.1 4970511 D 931281 CDS YP_005932227.1 386013950 12522635 4971977..4973707 1 NC_017530.1 type I restriction-modification system, S subunit; HsdS protein 4973707 hsdS 12522635 hsdS Pseudomonas putida BIRD-1 HsdS protein YP_005932227.1 4971977 D 931281 CDS YP_005932228.1 386013951 12522636 4973718..4975613 1 NC_017530.1 hypothetical protein 4975613 12522636 PPUBIRD1_4452 Pseudomonas putida BIRD-1 hypothetical protein YP_005932228.1 4973718 D 931281 CDS YP_005932229.1 386013952 12522637 complement(4976155..4977162) 1 NC_017530.1 Malate/L-lactate dehydrogenase family protein 4977162 12522637 PPUBIRD1_4453 Pseudomonas putida BIRD-1 Malate/L-lactate dehydrogenase family protein YP_005932229.1 4976155 R 931281 CDS YP_005932230.1 386013953 12522638 complement(4977315..4978148) 1 NC_017530.1 amino acid ABC transporter substrate-binding protein 4978148 12522638 PPUBIRD1_4454 Pseudomonas putida BIRD-1 amino acid ABC transporter substrate-binding protein YP_005932230.1 4977315 R 931281 CDS YP_005932231.1 386013954 12522639 complement(4978206..4978865) 1 NC_017530.1 Amino acid ABC transporter, permease protein 4978865 12522639 PPUBIRD1_4455 Pseudomonas putida BIRD-1 Amino acid ABC transporter, permease protein YP_005932231.1 4978206 R 931281 CDS YP_005932232.1 386013955 12522640 complement(4978862..4979503) 1 NC_017530.1 Amino acid ABC transporter, permease protein 4979503 12522640 PPUBIRD1_4456 Pseudomonas putida BIRD-1 Amino acid ABC transporter, permease protein YP_005932232.1 4978862 R 931281 CDS YP_005932233.1 386013956 12522641 complement(4979503..4980312) 1 NC_017530.1 amino acid ABC transporter ATP-binding protein 4980312 12522641 PPUBIRD1_4457 Pseudomonas putida BIRD-1 amino acid ABC transporter ATP-binding protein YP_005932233.1 4979503 R 931281 CDS YP_005932234.1 386013957 12522642 complement(4980326..4981633) 1 NC_017530.1 Aminopeptidase, putative 4981633 12522642 PPUBIRD1_4458 Pseudomonas putida BIRD-1 Aminopeptidase, putative YP_005932234.1 4980326 R 931281 CDS YP_005932235.1 386013958 12522643 complement(4981735..4983771) 1 NC_017530.1 N-methylproline demethylase 4983771 12522643 PPUBIRD1_4459 Pseudomonas putida BIRD-1 N-methylproline demethylase YP_005932235.1 4981735 R 931281 CDS YP_005932236.1 386013959 12522644 4983889..4984542 1 NC_017530.1 TetR family transcriptional regulator 4984542 12522644 PPUBIRD1_4460 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005932236.1 4983889 D 931281 CDS YP_005932237.1 386013960 12522645 complement(4984671..4987064) 1 NC_017530.1 TonB-dependent siderophore receptor 4987064 12522645 PPUBIRD1_4461 Pseudomonas putida BIRD-1 TonB-dependent siderophore receptor YP_005932237.1 4984671 R 931281 CDS YP_005932238.1 386013961 12522646 4987832..4988350 1 NC_017530.1 IcmW 4988350 icmW 12522646 icmW Pseudomonas putida BIRD-1 IcmW YP_005932238.1 4987832 D 931281 CDS YP_005932239.1 386013962 12522647 4988343..4989194 1 NC_017530.1 hypothetical protein 4989194 12522647 PPUBIRD1_4463 Pseudomonas putida BIRD-1 hypothetical protein YP_005932239.1 4988343 D 931281 CDS YP_005932240.1 386013963 12522648 4989206..4989961 1 NC_017530.1 hypothetical protein 4989961 12522648 PPUBIRD1_4464 Pseudomonas putida BIRD-1 hypothetical protein YP_005932240.1 4989206 D 931281 CDS YP_005932241.1 386013964 12522649 4989963..4991099 1 NC_017530.1 hypothetical protein 4991099 12522649 PPUBIRD1_4465 Pseudomonas putida BIRD-1 hypothetical protein YP_005932241.1 4989963 D 931281 CDS YP_005932242.1 386013965 12522650 4991107..4992282 1 NC_017530.1 Putative lipoprotein 4992282 12522650 PPUBIRD1_4466 Pseudomonas putida BIRD-1 Putative lipoprotein YP_005932242.1 4991107 D 931281 CDS YP_005932243.1 386013966 12522651 4992296..4993432 1 NC_017530.1 hypothetical protein 4993432 12522651 PPUBIRD1_4467 Pseudomonas putida BIRD-1 hypothetical protein YP_005932243.1 4992296 D 931281 CDS YP_005932244.1 386013967 12522652 4993460..4994848 1 NC_017530.1 hypothetical protein 4994848 12522652 PPUBIRD1_4468 Pseudomonas putida BIRD-1 hypothetical protein YP_005932244.1 4993460 D 931281 CDS YP_005932245.1 386013968 12522653 4994923..4995348 1 NC_017530.1 hypothetical protein 4995348 12522653 PPUBIRD1_4469 Pseudomonas putida BIRD-1 hypothetical protein YP_005932245.1 4994923 D 931281 CDS YP_005932246.1 386013969 12522654 4995364..4995792 1 NC_017530.1 hypothetical protein 4995792 12522654 PPUBIRD1_4470 Pseudomonas putida BIRD-1 hypothetical protein YP_005932246.1 4995364 D 931281 CDS YP_005932247.1 386013970 12522655 complement(4995944..4996360) 1 NC_017530.1 hypothetical protein 4996360 12522655 PPUBIRD1_4471 Pseudomonas putida BIRD-1 hypothetical protein YP_005932247.1 4995944 R 931281 CDS YP_005932248.1 386013971 12522656 complement(4996446..4997057) 1 NC_017530.1 hypothetical protein 4997057 12522656 PPUBIRD1_4472 Pseudomonas putida BIRD-1 hypothetical protein YP_005932248.1 4996446 R 931281 CDS YP_005932249.1 386013972 12522657 4997173..4997520 1 NC_017530.1 hypothetical protein 4997520 12522657 PPUBIRD1_4473 Pseudomonas putida BIRD-1 hypothetical protein YP_005932249.1 4997173 D 931281 CDS YP_005932250.1 386013973 12522658 complement(4997539..4998192) 1 NC_017530.1 OmpA/MotB domain-containing protein 4998192 12522658 PPUBIRD1_4474 Pseudomonas putida BIRD-1 OmpA/MotB domain-containing protein YP_005932250.1 4997539 R 931281 CDS YP_005932251.1 386013974 12522659 complement(4998189..4998680) 1 NC_017530.1 hypothetical protein 4998680 12522659 PPUBIRD1_4475 Pseudomonas putida BIRD-1 hypothetical protein YP_005932251.1 4998189 R 931281 CDS YP_005932252.1 386013975 12522660 4998972..4999505 1 NC_017530.1 hypothetical protein 4999505 12522660 PPUBIRD1_4476 Pseudomonas putida BIRD-1 hypothetical protein YP_005932252.1 4998972 D 931281 CDS YP_005932253.1 386013976 12522661 4999544..5000797 1 NC_017530.1 hypothetical protein 5000797 12522661 PPUBIRD1_4477 Pseudomonas putida BIRD-1 hypothetical protein YP_005932253.1 4999544 D 931281 CDS YP_005932254.1 386013977 12522662 complement(5000906..5001388) 1 NC_017530.1 hypothetical protein 5001388 12522662 PPUBIRD1_4478 Pseudomonas putida BIRD-1 hypothetical protein YP_005932254.1 5000906 R 931281 CDS YP_005932255.1 386013978 12522663 complement(5001449..5003248) 1 NC_017530.1 hypothetical protein 5003248 12522663 PPUBIRD1_4479 Pseudomonas putida BIRD-1 hypothetical protein YP_005932255.1 5001449 R 931281 CDS YP_005932256.1 386013979 12522664 complement(5003301..5003753) 1 NC_017530.1 hypothetical protein 5003753 12522664 PPUBIRD1_4480 Pseudomonas putida BIRD-1 hypothetical protein YP_005932256.1 5003301 R 931281 CDS YP_005932257.1 386013980 12522665 complement(5003844..5004230) 1 NC_017530.1 hypothetical protein 5004230 12522665 PPUBIRD1_4481 Pseudomonas putida BIRD-1 hypothetical protein YP_005932257.1 5003844 R 931281 CDS YP_005932258.1 386013981 12522666 complement(5004400..5007384) 1 NC_017530.1 hypothetical protein 5007384 12522666 PPUBIRD1_4482 Pseudomonas putida BIRD-1 hypothetical protein YP_005932258.1 5004400 R 931281 CDS YP_005932259.1 386013982 12522667 5008296..5008892 1 NC_017530.1 hypothetical protein 5008892 12522667 PPUBIRD1_4484 Pseudomonas putida BIRD-1 hypothetical protein YP_005932259.1 5008296 D 931281 CDS YP_005932260.1 386013983 12522668 5008903..5009256 1 NC_017530.1 hypothetical protein 5009256 12522668 PPUBIRD1_4485 Pseudomonas putida BIRD-1 hypothetical protein YP_005932260.1 5008903 D 931281 CDS YP_005932261.1 386013984 12522669 complement(5009354..5010202) 1 NC_017530.1 Putative lipoprotein 5010202 12522669 PPUBIRD1_4486 Pseudomonas putida BIRD-1 Putative lipoprotein YP_005932261.1 5009354 R 931281 CDS YP_005932262.1 386013985 12522670 complement(5010239..5010730) 1 NC_017530.1 hypothetical protein 5010730 12522670 PPUBIRD1_4487 Pseudomonas putida BIRD-1 hypothetical protein YP_005932262.1 5010239 R 931281 CDS YP_005932263.1 386013986 12522671 complement(5010817..5011659) 1 NC_017530.1 hypothetical protein 5011659 12522671 PPUBIRD1_4488 Pseudomonas putida BIRD-1 hypothetical protein YP_005932263.1 5010817 R 931281 CDS YP_005932264.1 386013987 12522672 complement(5011909..5012703) 1 NC_017530.1 hypothetical protein 5012703 12522672 PPUBIRD1_4489 Pseudomonas putida BIRD-1 hypothetical protein YP_005932264.1 5011909 R 931281 CDS YP_005932265.1 386013988 12522673 complement(5012716..5013684) 1 NC_017530.1 hypothetical protein 5013684 12522673 PPUBIRD1_4490 Pseudomonas putida BIRD-1 hypothetical protein YP_005932265.1 5012716 R 931281 CDS YP_005932266.1 386013989 12522674 complement(5013816..5015126) 1 NC_017530.1 Type IV secretion system protein IcmP/DotM 5015126 12522674 PPUBIRD1_4491 Pseudomonas putida BIRD-1 Type IV secretion system protein IcmP/DotM YP_005932266.1 5013816 R 931281 CDS YP_005932267.1 386013990 12522675 complement(5015504..5016703) 1 NC_017530.1 Type IV secretion system protein DotB 5016703 12522675 PPUBIRD1_4493 Pseudomonas putida BIRD-1 Type IV secretion system protein DotB YP_005932267.1 5015504 R 931281 CDS YP_005932268.1 386013991 12522676 complement(5016700..5017605) 1 NC_017530.1 Putative type IV secretion system protein DotC 5017605 12522676 PPUBIRD1_4494 Pseudomonas putida BIRD-1 Putative type IV secretion system protein DotC YP_005932268.1 5016700 R 931281 CDS YP_005932269.1 386013992 12522677 complement(5017608..5018093) 1 NC_017530.1 Putative lipoprotein 5018093 12522677 PPUBIRD1_4495 Pseudomonas putida BIRD-1 Putative lipoprotein YP_005932269.1 5017608 R 931281 CDS YP_005932270.1 386013993 12522678 complement(5018190..5018714) 1 NC_017530.1 Putative conjugal transfer protein TrbN 5018714 12522678 PPUBIRD1_4496 Pseudomonas putida BIRD-1 Putative conjugal transfer protein TrbN YP_005932270.1 5018190 R 931281 CDS YP_005932271.1 386013994 12522679 complement(5018717..5019334) 1 NC_017530.1 hypothetical protein 5019334 12522679 PPUBIRD1_4497 Pseudomonas putida BIRD-1 hypothetical protein YP_005932271.1 5018717 R 931281 CDS YP_005932272.1 386013995 12522680 complement(5019450..5022401) 1 NC_017530.1 Putative type IV secretion system protein IcmO/DotL 5022401 12522680 PPUBIRD1_4498 Pseudomonas putida BIRD-1 Putative type IV secretion system protein IcmO/DotL YP_005932272.1 5019450 R 931281 CDS YP_005932273.1 386013996 12522681 complement(5022413..5025496) 1 NC_017530.1 Putative type IV secretion system protein IcmB/DotO 5025496 12522681 PPUBIRD1_4499 Pseudomonas putida BIRD-1 Putative type IV secretion system protein IcmB/DotO YP_005932273.1 5022413 R 931281 CDS YP_005932274.1 386013997 12522682 complement(5025539..5026285) 1 NC_017530.1 Putative type IV secretion system protein IcmJ/DotN 5026285 12522682 PPUBIRD1_4500 Pseudomonas putida BIRD-1 Putative type IV secretion system protein IcmJ/DotN YP_005932274.1 5025539 R 931281 CDS YP_005932275.1 386013998 12522683 complement(5026359..5026739) 1 NC_017530.1 hypothetical protein 5026739 12522683 PPUBIRD1_4501 Pseudomonas putida BIRD-1 hypothetical protein YP_005932275.1 5026359 R 931281 CDS YP_005932276.1 386013999 12522684 complement(5026777..5027361) 1 NC_017530.1 Putative type IV secretion system protein IcmC/DotIE 5027361 12522684 PPUBIRD1_4502 Pseudomonas putida BIRD-1 Putative type IV secretion system protein IcmC/DotIE YP_005932276.1 5026777 R 931281 CDS YP_005932277.1 386014000 12522685 complement(5027377..5028000) 1 NC_017530.1 Putative type IV secretion system protein IcmG/DotF 5028000 12522685 PPUBIRD1_4503 Pseudomonas putida BIRD-1 Putative type IV secretion system protein IcmG/DotF YP_005932277.1 5027377 R 931281 CDS YP_005932278.1 386014001 12522686 complement(5028011..5029438) 1 NC_017530.1 Putative type IV secretion system protein IcmE/DotG 5029438 12522686 PPUBIRD1_4504 Pseudomonas putida BIRD-1 Putative type IV secretion system protein IcmE/DotG YP_005932278.1 5028011 R 931281 CDS YP_005932279.1 386014002 12522687 complement(5029435..5030448) 1 NC_017530.1 Putative type IV secretion system protein IcmK/DotH 5030448 12522687 PPUBIRD1_4505 Pseudomonas putida BIRD-1 Putative type IV secretion system protein IcmK/DotH YP_005932279.1 5029435 R 931281 CDS YP_005932280.1 386014003 12522688 complement(5030451..5031215) 1 NC_017530.1 Putative type IV secretion system protein IcmL/DotI 5031215 12522688 PPUBIRD1_4506 Pseudomonas putida BIRD-1 Putative type IV secretion system protein IcmL/DotI YP_005932280.1 5030451 R 931281 CDS YP_005932281.1 386014004 12522689 complement(5032392..5033783) 1 NC_017530.1 Amino acid permease-associated region 5033783 12522689 PPUBIRD1_4508 Pseudomonas putida BIRD-1 Amino acid permease-associated region YP_005932281.1 5032392 R 931281 CDS YP_005932282.1 386014005 12522690 complement(5034551..5035900) 1 NC_017530.1 glucarate dehydratase 5035900 12522690 PPUBIRD1_4510 Pseudomonas putida BIRD-1 glucarate dehydratase YP_005932282.1 5034551 R 931281 CDS YP_005932283.1 386014006 12522691 complement(5035926..5037278) 1 NC_017530.1 Major facilitator family transporter 5037278 12522691 PPUBIRD1_4511 Pseudomonas putida BIRD-1 Major facilitator family transporter YP_005932283.1 5035926 R 931281 CDS YP_005932284.1 386014007 12522692 5037538..5038239 1 NC_017530.1 GntR family transcriptional regulator 5038239 12522692 PPUBIRD1_4512 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005932284.1 5037538 D 931281 CDS YP_005932285.1 386014008 12522693 complement(5038328..5039338) 1 NC_017530.1 Alcohol dehydrogenase, zinc-containing 5039338 12522693 PPUBIRD1_4513 Pseudomonas putida BIRD-1 Alcohol dehydrogenase, zinc-containing YP_005932285.1 5038328 R 931281 CDS YP_005932286.1 386014009 12522694 complement(5039503..5040093) 1 NC_017530.1 HAD family hydrolase 5040093 12522694 PPUBIRD1_4515 Pseudomonas putida BIRD-1 HAD family hydrolase YP_005932286.1 5039503 R 931281 CDS YP_005932287.1 386014010 12522695 complement(5040090..5040959) 1 NC_017530.1 Acyl-CoA thioesterase II 5040959 12522695 PPUBIRD1_4516 Pseudomonas putida BIRD-1 Acyl-CoA thioesterase II YP_005932287.1 5040090 R 931281 CDS YP_005932288.1 386014011 12522696 complement(5041109..5041678) 1 NC_017530.1 N-acetyltransferase GCN5 5041678 12522696 PPUBIRD1_4517 Pseudomonas putida BIRD-1 N-acetyltransferase GCN5 YP_005932288.1 5041109 R 931281 CDS YP_005932289.1 386014012 12522697 5041858..5042544 1 NC_017530.1 Putative phosphohistidine phosphatase, SixA 5042544 12522697 PPUBIRD1_4519 Pseudomonas putida BIRD-1 Putative phosphohistidine phosphatase, SixA YP_005932289.1 5041858 D 931281 CDS YP_005932290.1 386014013 12522698 5042756..5043670 1 NC_017530.1 Histone deacetylase superfamily 5043670 12522698 PPUBIRD1_4520 Pseudomonas putida BIRD-1 Histone deacetylase superfamily YP_005932290.1 5042756 D 931281 CDS YP_005932291.1 386014014 12522699 5043885..5045057 1 NC_017530.1 hypothetical protein 5045057 12522699 PPUBIRD1_4521 Pseudomonas putida BIRD-1 hypothetical protein YP_005932291.1 5043885 D 931281 CDS YP_005932292.1 386014015 12522700 complement(5045163..5046494) 1 NC_017530.1 DEAD/DEAH box helicase 5046494 12522700 PPUBIRD1_4522 Pseudomonas putida BIRD-1 DEAD/DEAH box helicase YP_005932292.1 5045163 R 931281 CDS YP_005932293.1 386014016 12522701 complement(5046550..5047470) 1 NC_017530.1 hypothetical protein 5047470 12522701 PPUBIRD1_4523 Pseudomonas putida BIRD-1 hypothetical protein YP_005932293.1 5046550 R 931281 CDS YP_005932294.1 386014017 12522702 complement(5047610..5048221) 1 NC_017530.1 DNA polymerase III subunit epsilon 5048221 12522702 PPUBIRD1_4524 Pseudomonas putida BIRD-1 DNA polymerase III subunit epsilon YP_005932294.1 5047610 R 931281 CDS YP_005932295.1 386014018 12522703 complement(5048231..5048710) 1 NC_017530.1 hypothetical protein 5048710 12522703 PPUBIRD1_4525 Pseudomonas putida BIRD-1 hypothetical protein YP_005932295.1 5048231 R 931281 CDS YP_005932296.1 386014019 12522704 complement(5048872..5049630) 1 NC_017530.1 Putative periplasmic ligand-binding sensor protein 5049630 12522704 PPUBIRD1_4526 Pseudomonas putida BIRD-1 Putative periplasmic ligand-binding sensor protein YP_005932296.1 5048872 R 931281 CDS YP_005932297.1 386014020 12522705 5049798..5050454 1 NC_017530.1 hypothetical protein 5050454 12522705 PPUBIRD1_4527 Pseudomonas putida BIRD-1 hypothetical protein YP_005932297.1 5049798 D 931281 CDS YP_005932298.1 386014021 12522706 5050541..5051059 1 NC_017530.1 hypothetical protein 5051059 12522706 PPUBIRD1_4528 Pseudomonas putida BIRD-1 hypothetical protein YP_005932298.1 5050541 D 931281 CDS YP_005932299.1 386014022 12522707 complement(5051129..5053222) 1 NC_017530.1 ATP-dependent helicase HrpB; HrpB protein 5053222 hrpB 12522707 hrpB Pseudomonas putida BIRD-1 HrpB protein YP_005932299.1 5051129 R 931281 CDS YP_005932300.1 386014023 12522708 5053284..5054942 1 NC_017530.1 hypothetical protein 5054942 12522708 PPUBIRD1_4530 Pseudomonas putida BIRD-1 hypothetical protein YP_005932300.1 5053284 D 931281 CDS YP_005932301.1 386014024 12522709 5055624..5057720 1 NC_017530.1 Site-specific recombinase, phage integrase family domain protein 5057720 12522709 PPUBIRD1_4531 Pseudomonas putida BIRD-1 Site-specific recombinase, phage integrase family domain protein YP_005932301.1 5055624 D 931281 CDS YP_005932302.1 386014025 12522710 5058308..5059705 1 NC_017530.1 phage integrase family site-specific recombinase 5059705 12522710 PPUBIRD1_4532 Pseudomonas putida BIRD-1 phage integrase family site-specific recombinase YP_005932302.1 5058308 D 931281 CDS YP_005932303.1 386014026 12522711 5061672..5062430 1 NC_017530.1 hypothetical protein 5062430 12522711 PPUBIRD1_4535 Pseudomonas putida BIRD-1 hypothetical protein YP_005932303.1 5061672 D 931281 CDS YP_005932304.1 386014027 12522712 5063127..5063420 1 NC_017530.1 Transposase IS3 5063420 12522712 PPUBIRD1_4536 Pseudomonas putida BIRD-1 Transposase IS3 YP_005932304.1 5063127 D 931281 CDS YP_005932305.1 386014028 12522713 5063417..5064280 1 NC_017530.1 Putative isxal7 transposase orfb protein 5064280 12522713 PPUBIRD1_4537 Pseudomonas putida BIRD-1 Putative isxal7 transposase orfb protein YP_005932305.1 5063417 D 931281 CDS YP_005932306.1 386014029 12522714 5064966..5065712 1 NC_017530.1 hypothetical protein 5065712 12522714 PPUBIRD1_4538 Pseudomonas putida BIRD-1 hypothetical protein YP_005932306.1 5064966 D 931281 CDS YP_005932307.1 386014030 12522715 complement(5066061..5067095) 1 NC_017530.1 serine/threonine kinase; Stk 5067095 stk 12522715 stk Pseudomonas putida BIRD-1 Stk YP_005932307.1 5066061 R 931281 CDS YP_005932308.1 386014031 12522716 complement(5067092..5067295) 1 NC_017530.1 hypothetical protein 5067295 12522716 PPUBIRD1_4540 Pseudomonas putida BIRD-1 hypothetical protein YP_005932308.1 5067092 R 931281 CDS YP_005932309.1 386014032 12522717 5067924..5070209 1 NC_017530.1 Superfamily I DNA/RNA helicase-like protein 5070209 12522717 PPUBIRD1_4541 Pseudomonas putida BIRD-1 Superfamily I DNA/RNA helicase-like protein YP_005932309.1 5067924 D 931281 CDS YP_005932310.1 386014033 12522718 complement(5070812..5072251) 1 NC_017530.1 hypothetical protein 5072251 12522718 PPUBIRD1_4542 Pseudomonas putida BIRD-1 hypothetical protein YP_005932310.1 5070812 R 931281 CDS YP_005932311.1 386014034 12522719 complement(5076014..5077198) 1 NC_017530.1 hypothetical protein 5077198 12522719 PPUBIRD1_4543 Pseudomonas putida BIRD-1 hypothetical protein YP_005932311.1 5076014 R 931281 CDS YP_005932312.1 386014035 12522720 complement(5079887..5080468) 1 NC_017530.1 Metallophosphoesterase 5080468 12522720 PPUBIRD1_4544 Pseudomonas putida BIRD-1 Metallophosphoesterase YP_005932312.1 5079887 R 931281 CDS YP_005932313.1 386014036 12522721 5081838..5082182 1 NC_017530.1 Fis family transcriptional regulator 5082182 12522721 PPUBIRD1_4545 Pseudomonas putida BIRD-1 Fis family transcriptional regulator YP_005932313.1 5081838 D 931281 CDS YP_005932314.1 386014037 12522722 complement(5084710..5086395) 1 NC_017530.1 hypothetical protein 5086395 12522722 PPUBIRD1_4546 Pseudomonas putida BIRD-1 hypothetical protein YP_005932314.1 5084710 R 931281 CDS YP_005932315.1 386014038 12522723 complement(5086392..5087291) 1 NC_017530.1 hypothetical protein 5087291 12522723 PPUBIRD1_4547 Pseudomonas putida BIRD-1 hypothetical protein YP_005932315.1 5086392 R 931281 CDS YP_005932316.1 386014039 12522724 complement(5087665..5090199) 1 NC_017530.1 ATP-dependent helicase HrpB 5090199 12522724 PPUBIRD1_4548 Pseudomonas putida BIRD-1 ATP-dependent helicase HrpB YP_005932316.1 5087665 R 931281 CDS YP_005932317.1 386014040 12522725 complement(5090298..5090720) 1 NC_017530.1 hypothetical protein 5090720 12522725 PPUBIRD1_4549 Pseudomonas putida BIRD-1 hypothetical protein YP_005932317.1 5090298 R 931281 CDS YP_005932318.1 386014041 12522726 complement(5090772..5091059) 1 NC_017530.1 hypothetical protein 5091059 12522726 PPUBIRD1_4550 Pseudomonas putida BIRD-1 hypothetical protein YP_005932318.1 5090772 R 931281 CDS YP_005932319.1 386014042 12522727 complement(5092206..5093474) 1 NC_017530.1 hypothetical protein 5093474 12522727 PPUBIRD1_4551 Pseudomonas putida BIRD-1 hypothetical protein YP_005932319.1 5092206 R 931281 CDS YP_005932320.1 386014043 12522728 complement(5093471..5094172) 1 NC_017530.1 hypothetical protein 5094172 12522728 PPUBIRD1_4552 Pseudomonas putida BIRD-1 hypothetical protein YP_005932320.1 5093471 R 931281 CDS YP_005932321.1 386014044 12522729 complement(5094369..5096234) 1 NC_017530.1 KAP P-loop domain-containing protein 5096234 12522729 PPUBIRD1_4553 Pseudomonas putida BIRD-1 KAP P-loop domain-containing protein YP_005932321.1 5094369 R 931281 CDS YP_005932322.1 386014045 12522730 complement(5096411..5098087) 1 NC_017530.1 hypothetical protein 5098087 12522730 PPUBIRD1_4554 Pseudomonas putida BIRD-1 hypothetical protein YP_005932322.1 5096411 R 931281 CDS YP_005932323.1 386014046 12522731 complement(5098289..5098738) 1 NC_017530.1 ATP-dependent helicase HrpB; HrpB_2 5098738 hrpB_2 12522731 hrpB_2 Pseudomonas putida BIRD-1 HrpB_2 YP_005932323.1 5098289 R 931281 CDS YP_005932324.1 386014047 12522732 5098855..5099274 1 NC_017530.1 hypothetical protein 5099274 12522732 PPUBIRD1_4556 Pseudomonas putida BIRD-1 hypothetical protein YP_005932324.1 5098855 D 931281 CDS YP_005932325.1 386014048 12522733 5099297..5100169 1 NC_017530.1 Cation diffusion facilitator family transporter 5100169 12522733 PPUBIRD1_4557 Pseudomonas putida BIRD-1 Cation diffusion facilitator family transporter YP_005932325.1 5099297 D 931281 CDS YP_005932326.1 386014049 12522734 complement(5100327..5101163) 1 NC_017530.1 hypothetical protein 5101163 12522734 PPUBIRD1_4558 Pseudomonas putida BIRD-1 hypothetical protein YP_005932326.1 5100327 R 931281 CDS YP_005932327.1 386014050 12522735 5101559..5102035 1 NC_017530.1 AsnC family transcriptional regulator 5102035 12522735 PPUBIRD1_4559 Pseudomonas putida BIRD-1 AsnC family transcriptional regulator YP_005932327.1 5101559 D 931281 CDS YP_005932328.1 386014051 12522736 5102090..5102293 1 NC_017530.1 hypothetical protein 5102293 12522736 PPUBIRD1_4560 Pseudomonas putida BIRD-1 hypothetical protein YP_005932328.1 5102090 D 931281 CDS YP_005932329.1 386014052 12522737 complement(5102406..5103038) 1 NC_017530.1 Pseudouridine synthase 5103038 12522737 PPUBIRD1_4561 Pseudomonas putida BIRD-1 Pseudouridine synthase YP_005932329.1 5102406 R 931281 CDS YP_005932330.1 386014053 12522738 complement(5103045..5104508) 1 NC_017530.1 AMP nucleosidase 5104508 12522738 PPUBIRD1_4562 Pseudomonas putida BIRD-1 AMP nucleosidase YP_005932330.1 5103045 R 931281 CDS YP_005932331.1 386014054 12522739 complement(5104614..5106266) 1 NC_017530.1 Acyl-CoA dehydrogenase domain-containing protein 5106266 12522739 PPUBIRD1_4563 Pseudomonas putida BIRD-1 Acyl-CoA dehydrogenase domain-containing protein YP_005932331.1 5104614 R 931281 CDS YP_005932332.1 386014055 12522740 complement(5106478..5108466) 1 NC_017530.1 Integral membrane sensor signal transduction histidine kinase 5108466 12522740 PPUBIRD1_4564 Pseudomonas putida BIRD-1 Integral membrane sensor signal transduction histidine kinase YP_005932332.1 5106478 R 931281 CDS YP_005932333.1 386014056 12522741 5108801..5109529 1 NC_017530.1 phosphomethylpyrimidine kinase; bifunctional; ThiD 5109529 thiD 12522741 thiD Pseudomonas putida BIRD-1 ThiD YP_005932333.1 5108801 D 931281 CDS YP_005932334.1 386014057 12522742 5109543..5110166 1 NC_017530.1 Thiamine-phosphate pyrophosphorylase; ThiE 5110166 thiE 12522742 thiE Pseudomonas putida BIRD-1 ThiE YP_005932334.1 5109543 D 931281 CDS YP_005932335.1 386014058 12522743 5110183..5111466 1 NC_017530.1 Glutamate-1-semialdehyde 2,1-aminomutase; HemL 5111466 hemL 12522743 hemL Pseudomonas putida BIRD-1 HemL YP_005932335.1 5110183 D 931281 CDS YP_005932336.1 386014059 12522744 5111711..5112256 1 NC_017530.1 Sel1 domain-containing protein repeat-containing protein 5112256 12522744 PPUBIRD1_4568 Pseudomonas putida BIRD-1 Sel1 domain-containing protein repeat-containing protein YP_005932336.1 5111711 D 931281 CDS YP_005932337.1 386014060 12522745 complement(5112260..5112586) 1 NC_017530.1 hypothetical protein 5112586 12522745 PPUBIRD1_4569 Pseudomonas putida BIRD-1 hypothetical protein YP_005932337.1 5112260 R 931281 CDS YP_005932338.1 386014061 12522746 5112819..5113817 1 NC_017530.1 PhoH family protein 5113817 12522746 PPUBIRD1_4570 Pseudomonas putida BIRD-1 PhoH family protein YP_005932338.1 5112819 D 931281 CDS YP_005932339.1 386014062 12522747 5113810..5114283 1 NC_017530.1 Putative metalloprotease 5114283 12522747 PPUBIRD1_4571 Pseudomonas putida BIRD-1 Putative metalloprotease YP_005932339.1 5113810 D 931281 CDS YP_005932340.1 386014063 12522748 5114309..5115148 1 NC_017530.1 hypothetical protein 5115148 12522748 PPUBIRD1_4572 Pseudomonas putida BIRD-1 hypothetical protein YP_005932340.1 5114309 D 931281 CDS YP_005932341.1 386014064 12522749 5115157..5116674 1 NC_017530.1 Apolipoprotein N-acyltransferase; Lnt 5116674 lnt 12522749 lnt Pseudomonas putida BIRD-1 Lnt YP_005932341.1 5115157 D 931281 CDS YP_005932342.1 386014065 12522750 complement(5116821..5117582) 1 NC_017530.1 hypothetical protein 5117582 12522750 PPUBIRD1_4574 Pseudomonas putida BIRD-1 hypothetical protein YP_005932342.1 5116821 R 931281 CDS YP_005932343.1 386014066 12522751 complement(5117717..5118031) 1 NC_017530.1 hypothetical protein 5118031 12522751 PPUBIRD1_4576 Pseudomonas putida BIRD-1 hypothetical protein YP_005932343.1 5117717 R 931281 CDS YP_005932344.1 386014067 12522752 5118259..5120865 1 NC_017530.1 Leucyl-tRNA synthetase; LeuS protein 5120865 leuS 12522752 leuS Pseudomonas putida BIRD-1 LeuS protein YP_005932344.1 5118259 D 931281 CDS YP_005932345.1 386014068 12522753 5120927..5121532 1 NC_017530.1 Rare lipoprotein B 5121532 12522753 PPUBIRD1_4578 Pseudomonas putida BIRD-1 Rare lipoprotein B YP_005932345.1 5120927 D 931281 CDS YP_005932346.1 386014069 12522754 5121572..5122609 1 NC_017530.1 DNA polymerase III subunit delta; protein HolA 5122609 holA 12522754 holA Pseudomonas putida BIRD-1 protein HolA YP_005932346.1 5121572 D 931281 CDS YP_005932347.1 386014070 12522755 5122825..5122989 1 NC_017530.1 hypothetical protein 5122989 12522755 PPUBIRD1_4580 Pseudomonas putida BIRD-1 hypothetical protein YP_005932347.1 5122825 D 931281 CDS YP_005932348.1 386014071 12522756 5123050..5124366 1 NC_017530.1 Lytic murein transglycosylase 5124366 12522756 PPUBIRD1_4581 Pseudomonas putida BIRD-1 Lytic murein transglycosylase YP_005932348.1 5123050 D 931281 CDS YP_005932349.1 386014072 12522757 complement(5124400..5125338) 1 NC_017530.1 Muramoyltetrapeptide carboxypeptidase, putative 5125338 12522757 PPUBIRD1_4582 Pseudomonas putida BIRD-1 Muramoyltetrapeptide carboxypeptidase, putative YP_005932349.1 5124400 R 931281 CDS YP_005932350.1 386014073 12522758 complement(5125437..5126453) 1 NC_017530.1 Lipoyl synthase; LipA protein 5126453 lipA 12522758 lipA Pseudomonas putida BIRD-1 LipA protein YP_005932350.1 5125437 R 931281 CDS YP_005932351.1 386014074 12522759 complement(5126456..5127103) 1 NC_017530.1 Octanoyltransferase; protein LipB 5127103 lipB 12522759 lipB Pseudomonas putida BIRD-1 protein LipB YP_005932351.1 5126456 R 931281 CDS YP_005932352.1 386014075 12522760 complement(5127103..5127378) 1 NC_017530.1 hypothetical protein 5127378 12522760 PPUBIRD1_4585 Pseudomonas putida BIRD-1 hypothetical protein YP_005932352.1 5127103 R 931281 CDS YP_005932353.1 386014076 12522761 complement(5127452..5128612) 1 NC_017530.1 Serine-type D-Ala-D-Ala carboxypeptidase; protein DacA 5128612 dacA 12522761 dacA Pseudomonas putida BIRD-1 protein DacA YP_005932353.1 5127452 R 931281 CDS YP_005932354.1 386014077 12522762 complement(5128833..5129834) 1 NC_017530.1 Rare lipoprotein A family 5129834 12522762 PPUBIRD1_4587 Pseudomonas putida BIRD-1 Rare lipoprotein A family YP_005932354.1 5128833 R 931281 CDS YP_005932355.1 386014078 12522763 complement(5129834..5130844) 1 NC_017530.1 lytic murein transglycosylase B; protein MltB 5130844 mltB 12522763 mltB Pseudomonas putida BIRD-1 protein MltB YP_005932355.1 5129834 R 931281 CDS YP_005932356.1 386014079 12522764 complement(5130862..5132007) 1 NC_017530.1 Rod shape-determining protein RodA 5132007 12522764 PPUBIRD1_4589 Pseudomonas putida BIRD-1 Rod shape-determining protein RodA YP_005932356.1 5130862 R 931281 CDS YP_005932357.1 386014080 12522765 complement(5132004..5133893) 1 NC_017530.1 peptidoglycan glycosyltransferase 5133893 12522765 PPUBIRD1_4590 Pseudomonas putida BIRD-1 peptidoglycan glycosyltransferase YP_005932357.1 5132004 R 931281 CDS YP_005932358.1 386014081 12522766 complement(5133910..5134377) 1 NC_017530.1 ribosomal RNA large subunit methyltransferase H 5134377 12522766 PPUBIRD1_4591 Pseudomonas putida BIRD-1 ribosomal RNA large subunit methyltransferase H YP_005932358.1 5133910 R 931281 CDS YP_005932359.1 386014082 12522767 complement(5134388..5134807) 1 NC_017530.1 Iojap-like protein 5134807 12522767 PPUBIRD1_4592 Pseudomonas putida BIRD-1 Iojap-like protein YP_005932359.1 5134388 R 931281 CDS YP_005932360.1 386014083 12522768 complement(5134851..5135543) 1 NC_017530.1 Probable nicotinate-nucleotide adenylyltransferase; NadD protein 5135543 nadD 12522768 nadD Pseudomonas putida BIRD-1 NadD protein YP_005932360.1 5134851 R 931281 CDS YP_005932361.1 386014084 12522769 complement(5135512..5136783) 1 NC_017530.1 Gamma-glutamyl phosphate reductase; protein ProA 5136783 proA 12522769 proA Pseudomonas putida BIRD-1 protein ProA YP_005932361.1 5135512 R 931281 CDS YP_005932362.1 386014085 12522770 5137088..5137756 1 NC_017530.1 3-methyladenine DNA glycosylase 5137756 12522770 PPUBIRD1_4595 Pseudomonas putida BIRD-1 3-methyladenine DNA glycosylase YP_005932362.1 5137088 D 931281 CDS YP_005932363.1 386014086 12522771 5137759..5139075 1 NC_017530.1 PAP2 family protein/DedA family protein 5139075 12522771 PPUBIRD1_4596 Pseudomonas putida BIRD-1 PAP2 family protein/DedA family protein YP_005932363.1 5137759 D 931281 CDS YP_005932364.1 386014087 12522772 complement(5139206..5139796) 1 NC_017530.1 Peptidase S16, lon domain-containing protein 5139796 12522772 PPUBIRD1_4597 Pseudomonas putida BIRD-1 Peptidase S16, lon domain-containing protein YP_005932364.1 5139206 R 931281 CDS YP_005932365.1 386014088 12522773 complement(5139806..5140522) 1 NC_017530.1 LrgB family protein 5140522 12522773 PPUBIRD1_4598 Pseudomonas putida BIRD-1 LrgB family protein YP_005932365.1 5139806 R 931281 CDS YP_005932366.1 386014089 12522774 complement(5140519..5140881) 1 NC_017530.1 LrgA family protein 5140881 12522774 PPUBIRD1_4599 Pseudomonas putida BIRD-1 LrgA family protein YP_005932366.1 5140519 R 931281 CDS YP_005932367.1 386014090 12522775 5141025..5141480 1 NC_017530.1 MaoC domain-containing protein 5141480 12522775 PPUBIRD1_4600 Pseudomonas putida BIRD-1 MaoC domain-containing protein YP_005932367.1 5141025 D 931281 CDS YP_005932368.1 386014091 12522776 5141597..5142475 1 NC_017530.1 Ribosomal protein L11 methyltransferase; PrmA 5142475 prmA 12522776 prmA Pseudomonas putida BIRD-1 PrmA YP_005932368.1 5141597 D 931281 CDS YP_005932369.1 386014092 12522777 5142519..5143874 1 NC_017530.1 Zinc finger-domain-containing protein 5143874 12522777 PPUBIRD1_4602 Pseudomonas putida BIRD-1 Zinc finger-domain-containing protein YP_005932369.1 5142519 D 931281 CDS YP_005932370.1 386014093 12522778 5144082..5145095 1 NC_017530.1 TRNA-dihydrouridine synthase B 5145095 12522778 PPUBIRD1_4603 Pseudomonas putida BIRD-1 TRNA-dihydrouridine synthase B YP_005932370.1 5144082 D 931281 CDS YP_005932371.1 386014094 12522779 5145134..5145412 1 NC_017530.1 DNA-binding protein Fis; Fis 5145412 fis 12522779 fis Pseudomonas putida BIRD-1 Fis YP_005932371.1 5145134 D 931281 CDS YP_005932372.1 386014095 12522780 5145494..5147101 1 NC_017530.1 Bifunctional purine biosynthesis protein purH; bifunctional; PurH 5147101 purH 12522780 purH Pseudomonas putida BIRD-1 PurH YP_005932372.1 5145494 D 931281 CDS YP_005932373.1 386014096 12522781 5147248..5148543 1 NC_017530.1 Phosphoribosylamine--glycine ligase 5148543 12522781 PPUBIRD1_4607 Pseudomonas putida BIRD-1 Phosphoribosylamine--glycine ligase YP_005932373.1 5147248 D 931281 CDS YP_005932374.1 386014097 12522782 5148679..5151450 1 NC_017530.1 Integral membrane sensor hybrid histidine kinase 5151450 12522782 PPUBIRD1_4608 Pseudomonas putida BIRD-1 Integral membrane sensor hybrid histidine kinase YP_005932374.1 5148679 D 931281 CDS YP_005932375.1 386014098 12522783 5151526..5152122 1 NC_017530.1 MarC membrane protein 5152122 12522783 PPUBIRD1_4609 Pseudomonas putida BIRD-1 MarC membrane protein YP_005932375.1 5151526 D 931281 CDS YP_005932376.1 386014099 12522784 complement(5152163..5152819) 1 NC_017530.1 hypothetical protein 5152819 12522784 PPUBIRD1_4610 Pseudomonas putida BIRD-1 hypothetical protein YP_005932376.1 5152163 R 931281 CDS YP_005932377.1 386014100 12522785 complement(5152812..5153501) 1 NC_017530.1 hypothetical protein 5153501 12522785 PPUBIRD1_4611 Pseudomonas putida BIRD-1 hypothetical protein YP_005932377.1 5152812 R 931281 CDS YP_005932378.1 386014101 12522786 complement(5153553..5154236) 1 NC_017530.1 hypothetical protein 5154236 12522786 PPUBIRD1_4612 Pseudomonas putida BIRD-1 hypothetical protein YP_005932378.1 5153553 R 931281 CDS YP_005932379.1 386014102 12522787 complement(5154355..5156052) 1 NC_017530.1 precorrin-3B C17-methyltransferase; protein CobJ 5156052 cobJ 12522787 cobJ Pseudomonas putida BIRD-1 protein CobJ YP_005932379.1 5154355 R 931281 CDS YP_005932380.1 386014103 12522788 complement(5156040..5156774) 1 NC_017530.1 Precorrin-2 C(20)-methyltransferase 5156774 12522788 PPUBIRD1_4614 Pseudomonas putida BIRD-1 Precorrin-2 C(20)-methyltransferase YP_005932380.1 5156040 R 931281 CDS YP_005932381.1 386014104 12522789 complement(5156771..5157397) 1 NC_017530.1 precorrin-8X methylmutase; CobH 5157397 cobH 12522789 cobH Pseudomonas putida BIRD-1 CobH YP_005932381.1 5156771 R 931281 CDS YP_005932382.1 386014105 12522790 complement(5157390..5158706) 1 NC_017530.1 Precorrin-3B synthase 5158706 12522790 PPUBIRD1_4616 Pseudomonas putida BIRD-1 Precorrin-3B synthase YP_005932382.1 5157390 R 931281 CDS YP_005932383.1 386014106 12522791 5158965..5160176 1 NC_017530.1 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; protein CobL 5160176 cobL 12522791 cobL Pseudomonas putida BIRD-1 protein CobL YP_005932383.1 5158965 D 931281 CDS YP_005932384.1 386014107 12522792 5160169..5161263 1 NC_017530.1 Putative cobalt-precorrin-6A synthase; protein CbiD 5161263 cbiD 12522792 cbiD Pseudomonas putida BIRD-1 protein CbiD YP_005932384.1 5160169 D 931281 CDS YP_005932385.1 386014108 12522793 5161260..5161979 1 NC_017530.1 cobalt-precorrin-6x reductase; CobK 5161979 cobK 12522793 cobK Pseudomonas putida BIRD-1 CobK YP_005932385.1 5161260 D 931281 CDS YP_005932386.1 386014109 12522794 5162108..5162545 1 NC_017530.1 hypothetical protein 5162545 12522794 PPUBIRD1_4620 Pseudomonas putida BIRD-1 hypothetical protein YP_005932386.1 5162108 D 931281 CDS YP_005932387.1 386014110 12522795 5162572..5163426 1 NC_017530.1 hypothetical protein 5163426 12522795 PPUBIRD1_4621 Pseudomonas putida BIRD-1 hypothetical protein YP_005932387.1 5162572 D 931281 CDS YP_005932388.1 386014111 12522796 5163547..5163936 1 NC_017530.1 hypothetical protein 5163936 12522796 PPUBIRD1_4622 Pseudomonas putida BIRD-1 hypothetical protein YP_005932388.1 5163547 D 931281 CDS YP_005932389.1 386014112 12522797 5163984..5164469 1 NC_017530.1 hypothetical protein 5164469 12522797 PPUBIRD1_4623 Pseudomonas putida BIRD-1 hypothetical protein YP_005932389.1 5163984 D 931281 CDS YP_005932390.1 386014113 12522798 5164492..5164923 1 NC_017530.1 hypothetical protein 5164923 12522798 PPUBIRD1_4624 Pseudomonas putida BIRD-1 hypothetical protein YP_005932390.1 5164492 D 931281 CDS YP_005932391.1 386014114 12522799 5164990..5167056 1 NC_017530.1 TonB-dependent copper receptor 5167056 12522799 PPUBIRD1_4625 Pseudomonas putida BIRD-1 TonB-dependent copper receptor YP_005932391.1 5164990 D 931281 CDS YP_005932392.1 386014115 12522800 5167112..5168479 1 NC_017530.1 hypothetical protein 5168479 12522800 PPUBIRD1_4626 Pseudomonas putida BIRD-1 hypothetical protein YP_005932392.1 5167112 D 931281 CDS YP_005932393.1 386014116 12522801 5168684..5170090 1 NC_017530.1 D-alanine/D-serine/glycine permease 5170090 12522801 PPUBIRD1_4627 Pseudomonas putida BIRD-1 D-alanine/D-serine/glycine permease YP_005932393.1 5168684 D 931281 CDS YP_005932394.1 386014117 12522802 5170340..5171605 1 NC_017530.1 Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative 5171605 12522802 PPUBIRD1_4628 Pseudomonas putida BIRD-1 Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative YP_005932394.1 5170340 D 931281 CDS YP_005932395.1 386014118 12522803 5171732..5173219 1 NC_017530.1 Inner-membrane translocator 5173219 12522803 PPUBIRD1_4629 Pseudomonas putida BIRD-1 Inner-membrane translocator YP_005932395.1 5171732 D 931281 CDS YP_005932396.1 386014119 12522804 5173219..5174298 1 NC_017530.1 Branched-chain amino acid ABC transporter, permease protein, putative 5174298 12522804 PPUBIRD1_4630 Pseudomonas putida BIRD-1 Branched-chain amino acid ABC transporter, permease protein, putative YP_005932396.1 5173219 D 931281 CDS YP_005932397.1 386014120 12522805 5174328..5175152 1 NC_017530.1 ABC transporter 5175152 12522805 PPUBIRD1_4631 Pseudomonas putida BIRD-1 ABC transporter YP_005932397.1 5174328 D 931281 CDS YP_005932398.1 386014121 12522806 5175305..5176003 1 NC_017530.1 ABC transporter 5176003 12522806 PPUBIRD1_4632 Pseudomonas putida BIRD-1 ABC transporter YP_005932398.1 5175305 D 931281 CDS YP_005932399.1 386014122 12522807 5176035..5176550 1 NC_017530.1 N-acetyltransferase GCN5 5176550 12522807 PPUBIRD1_4633 Pseudomonas putida BIRD-1 N-acetyltransferase GCN5 YP_005932399.1 5176035 D 931281 CDS YP_005932400.1 386014123 12522808 complement(5176693..5176998) 1 NC_017530.1 Chaperone modulatory protein cbpM 5176998 12522808 PPUBIRD1_4634 Pseudomonas putida BIRD-1 Chaperone modulatory protein cbpM YP_005932400.1 5176693 R 931281 CDS YP_005932401.1 386014124 12522809 complement(5177001..5177960) 1 NC_017530.1 curved DNA-binding protein 5177960 12522809 PPUBIRD1_4635 Pseudomonas putida BIRD-1 curved DNA-binding protein YP_005932401.1 5177001 R 931281 CDS YP_005932402.1 386014125 12522810 5178125..5179396 1 NC_017530.1 DnaK protein, putative 5179396 12522810 PPUBIRD1_4636 Pseudomonas putida BIRD-1 DnaK protein, putative YP_005932402.1 5178125 D 931281 CDS YP_005932403.1 386014126 12522811 complement(5179598..5180605) 1 NC_017530.1 hypothetical protein 5180605 12522811 PPUBIRD1_4637 Pseudomonas putida BIRD-1 hypothetical protein YP_005932403.1 5179598 R 931281 CDS YP_005932404.1 386014127 12522812 complement(5180675..5180962) 1 NC_017530.1 PsiF repeat protein 5180962 12522812 PPUBIRD1_4638 Pseudomonas putida BIRD-1 PsiF repeat protein YP_005932404.1 5180675 R 931281 CDS YP_005932405.1 386014128 12522813 complement(5181026..5181814) 1 NC_017530.1 AraC family transcriptional regulator 5181814 12522813 PPUBIRD1_4639 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005932405.1 5181026 R 931281 CDS YP_005932406.1 386014129 12522814 5182040..5182921 1 NC_017530.1 hypothetical protein 5182921 12522814 PPUBIRD1_4640 Pseudomonas putida BIRD-1 hypothetical protein YP_005932406.1 5182040 D 931281 CDS YP_005932407.1 386014130 12522815 complement(5182923..5183813) 1 NC_017530.1 Alpha/beta hydrolase fold project 5183813 12522815 PPUBIRD1_4641 Pseudomonas putida BIRD-1 Alpha/beta hydrolase fold project YP_005932407.1 5182923 R 931281 CDS YP_005932408.1 386014131 12522816 5183937..5184278 1 NC_017530.1 DNA-binding transcriptional activator OsmE 5184278 12522816 PPUBIRD1_4642 Pseudomonas putida BIRD-1 DNA-binding transcriptional activator OsmE YP_005932408.1 5183937 D 931281 CDS YP_005932409.1 386014132 12522817 5184321..5184851 1 NC_017530.1 Ferritin, Dps family protein 5184851 12522817 PPUBIRD1_4643 Pseudomonas putida BIRD-1 Ferritin, Dps family protein YP_005932409.1 5184321 D 931281 CDS YP_005932410.1 386014133 12522818 complement(5184891..5186957) 1 NC_017530.1 hypothetical protein 5186957 12522818 PPUBIRD1_4644 Pseudomonas putida BIRD-1 hypothetical protein YP_005932410.1 5184891 R 931281 CDS YP_005932411.1 386014134 12522819 5187297..5187839 1 NC_017530.1 hypothetical protein 5187839 12522819 PPUBIRD1_4645 Pseudomonas putida BIRD-1 hypothetical protein YP_005932411.1 5187297 D 931281 CDS YP_005932412.1 386014135 12522820 5187962..5188597 1 NC_017530.1 TetR family transcriptional regulator 5188597 12522820 PPUBIRD1_4646 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005932412.1 5187962 D 931281 CDS YP_005932413.1 386014136 12522821 5188650..5189750 1 NC_017530.1 N-acylglucosamine 2-epimerase 5189750 12522821 PPUBIRD1_4647 Pseudomonas putida BIRD-1 N-acylglucosamine 2-epimerase YP_005932413.1 5188650 D 931281 CDS YP_005932414.1 386014137 12522822 5189856..5190104 1 NC_017530.1 hypothetical protein 5190104 12522822 PPUBIRD1_4648 Pseudomonas putida BIRD-1 hypothetical protein YP_005932414.1 5189856 D 931281 CDS YP_005932415.1 386014138 12522823 complement(5190154..5190918) 1 NC_017530.1 Short chain dehydrogenase/reductase family oxidoreductase 5190918 12522823 PPUBIRD1_4649 Pseudomonas putida BIRD-1 Short chain dehydrogenase/reductase family oxidoreductase YP_005932415.1 5190154 R 931281 CDS YP_005932416.1 386014139 12522824 complement(5191512..5192228) 1 NC_017530.1 Branched chain amino acid ABC transporter ATP-binding protein 5192228 12522824 PPUBIRD1_4650 Pseudomonas putida BIRD-1 Branched chain amino acid ABC transporter ATP-binding protein YP_005932416.1 5191512 R 931281 CDS YP_005932417.1 386014140 12522825 complement(5192225..5193100) 1 NC_017530.1 Branched chain amino acid ABC transporter ATP-binding protein 5193100 12522825 PPUBIRD1_4651 Pseudomonas putida BIRD-1 Branched chain amino acid ABC transporter ATP-binding protein YP_005932417.1 5192225 R 931281 CDS YP_005932418.1 386014141 12522826 complement(5193097..5194398) 1 NC_017530.1 Inner-membrane translocator 5194398 12522826 PPUBIRD1_4652 Pseudomonas putida BIRD-1 Inner-membrane translocator YP_005932418.1 5193097 R 931281 CDS YP_005932419.1 386014142 12522827 complement(5194401..5195315) 1 NC_017530.1 Inner-membrane translocator 5195315 12522827 PPUBIRD1_4653 Pseudomonas putida BIRD-1 Inner-membrane translocator YP_005932419.1 5194401 R 931281 CDS YP_005932420.1 386014143 12522828 complement(5195470..5196606) 1 NC_017530.1 extracellular ligand-binding receptor 5196606 12522828 PPUBIRD1_4654 Pseudomonas putida BIRD-1 extracellular ligand-binding receptor YP_005932420.1 5195470 R 931281 CDS YP_005932421.1 386014144 12522829 5196613..5197119 1 NC_017530.1 hypothetical protein 5197119 12522829 PPUBIRD1_4655 Pseudomonas putida BIRD-1 hypothetical protein YP_005932421.1 5196613 D 931281 CDS YP_005932422.1 386014145 12522830 5197119..5198324 1 NC_017530.1 Nicotinate phosphoribosyltransferase; protein PncB 5198324 pncB 12522830 pncB Pseudomonas putida BIRD-1 protein PncB YP_005932422.1 5197119 D 931281 CDS YP_005932423.1 386014146 12522831 5198328..5199155 1 NC_017530.1 NH(3)-dependent NAD(+) synthetase; protein NadE 5199155 nadE 12522831 nadE Pseudomonas putida BIRD-1 protein NadE YP_005932423.1 5198328 D 931281 CDS YP_005932424.1 386014147 12522832 complement(5199267..5199719) 1 NC_017530.1 Azurin 5199719 12522832 PPUBIRD1_4658 Pseudomonas putida BIRD-1 Azurin YP_005932424.1 5199267 R 931281 CDS YP_005932425.1 386014148 12522833 5200065..5200652 1 NC_017530.1 hypothetical protein 5200652 12522833 PPUBIRD1_4659 Pseudomonas putida BIRD-1 hypothetical protein YP_005932425.1 5200065 D 931281 CDS YP_005932426.1 386014149 12522834 complement(5200789..5203089) 1 NC_017530.1 hypothetical protein 5203089 12522834 PPUBIRD1_4660 Pseudomonas putida BIRD-1 hypothetical protein YP_005932426.1 5200789 R 931281 CDS YP_005932427.1 386014150 12522835 complement(5203373..5203504) 1 NC_017530.1 hypothetical protein 5203504 12522835 PPUBIRD1_4662 Pseudomonas putida BIRD-1 hypothetical protein YP_005932427.1 5203373 R 931281 CDS YP_005932428.1 386014151 12522836 complement(5203762..5205165) 1 NC_017530.1 replicative DNA helicase; DnaB protein 5205165 dnaB 12522836 dnaB Pseudomonas putida BIRD-1 DnaB protein YP_005932428.1 5203762 R 931281 CDS YP_005932429.1 386014152 12522837 complement(5205273..5205719) 1 NC_017530.1 50S ribosomal protein L9; RplI 5205719 rplI 12522837 rplI Pseudomonas putida BIRD-1 RplI YP_005932429.1 5205273 R 931281 CDS YP_005932430.1 386014153 12522838 complement(5205740..5206603) 1 NC_017530.1 hypothetical protein 5206603 12522838 PPUBIRD1_4665 Pseudomonas putida BIRD-1 hypothetical protein YP_005932430.1 5205740 R 931281 CDS YP_005932431.1 386014154 12522839 complement(5206637..5206867) 1 NC_017530.1 30S ribosomal protein S18; protein RpsR 5206867 rpsR 12522839 rpsR Pseudomonas putida BIRD-1 protein RpsR YP_005932431.1 5206637 R 931281 CDS YP_005932432.1 386014155 12522840 complement(5206896..5207321) 1 NC_017530.1 30S ribosomal protein S6; protein RpsF 5207321 rpsF 12522840 rpsF Pseudomonas putida BIRD-1 protein RpsF YP_005932432.1 5206896 R 931281 CDS YP_005932433.1 386014156 12522841 complement(5207611..5208357) 1 NC_017530.1 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB 5208357 12522841 PPUBIRD1_4668 Pseudomonas putida BIRD-1 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB YP_005932433.1 5207611 R 931281 CDS YP_005932434.1 386014157 12522842 complement(5208354..5210927) 1 NC_017530.1 Ribonuclease R 5210927 12522842 PPUBIRD1_4669 Pseudomonas putida BIRD-1 Ribonuclease R YP_005932434.1 5208354 R 931281 CDS YP_005932435.1 386014158 12522845 5211701..5212714 1 NC_017530.1 Iron ABC transporter, periplasmic iron-binding protein, putative 5212714 12522845 PPUBIRD1_4671 Pseudomonas putida BIRD-1 Iron ABC transporter, periplasmic iron-binding protein, putative YP_005932435.1 5211701 D 931281 CDS YP_005932436.1 386014159 12522846 5212714..5214279 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 5214279 12522846 PPUBIRD1_4672 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005932436.1 5212714 D 931281 CDS YP_005932437.1 386014160 12522847 complement(5214362..5214829) 1 NC_017530.1 hypothetical protein 5214829 12522847 PPUBIRD1_4673 Pseudomonas putida BIRD-1 hypothetical protein YP_005932437.1 5214362 R 931281 CDS YP_005932438.1 386014161 12522848 complement(5215004..5216893) 1 NC_017530.1 methyl-accepting chemotaxis sensory transducer 5216893 12522848 PPUBIRD1_4674 Pseudomonas putida BIRD-1 methyl-accepting chemotaxis sensory transducer YP_005932438.1 5215004 R 931281 CDS YP_005932439.1 386014162 12522849 complement(5217277..5218569) 1 NC_017530.1 Adenylosuccinate synthetase; protein PurA 5218569 purA 12522849 purA Pseudomonas putida BIRD-1 protein PurA YP_005932439.1 5217277 R 931281 CDS YP_005932440.1 386014163 12522850 complement(5218626..5219813) 1 NC_017530.1 ATP phosphoribosyltransferase regulatory subunit; HisZ protein 5219813 hisZ 12522850 hisZ Pseudomonas putida BIRD-1 HisZ protein YP_005932440.1 5218626 R 931281 CDS YP_005932441.1 386014164 12522852 complement(5220115..5220984) 1 NC_017530.1 HflC protein; protein HflC 5220984 hflC 12522852 hflC Pseudomonas putida BIRD-1 protein HflC YP_005932441.1 5220115 R 931281 CDS YP_005932442.1 386014165 12522853 complement(5220984..5222165) 1 NC_017530.1 HflK protein 5222165 hflK 12522853 hflK Pseudomonas putida BIRD-1 HflK protein YP_005932442.1 5220984 R 931281 CDS YP_005932443.1 386014166 12522854 complement(5222262..5223563) 1 NC_017530.1 GTP-binding protein HflX; protein HflX 5223563 hflX 12522854 hflX Pseudomonas putida BIRD-1 protein HflX YP_005932443.1 5222262 R 931281 CDS YP_005932444.1 386014167 12522855 complement(5223576..5223836) 1 NC_017530.1 Protein hfq; hypothetical protein 5223836 hfq 12522855 hfq Pseudomonas putida BIRD-1 hypothetical protein YP_005932444.1 5223576 R 931281 CDS YP_005932445.1 386014168 12522856 complement(5223931..5224902) 1 NC_017530.1 tRNA dimethylallyltransferase; protein MiaA 5224902 miaA 12522856 miaA Pseudomonas putida BIRD-1 protein MiaA YP_005932445.1 5223931 R 931281 CDS YP_005932446.1 386014169 12522857 complement(5224904..5226802) 1 NC_017530.1 DNA mismatch repair protein mutL; protein MutL 5226802 mutL 12522857 mutL Pseudomonas putida BIRD-1 protein MutL YP_005932446.1 5224904 R 931281 CDS YP_005932447.1 386014170 12522858 complement(5226802..5228232) 1 NC_017530.1 N-acetylmuramoyl-L-alanine amidase 5228232 12522858 PPUBIRD1_4684 Pseudomonas putida BIRD-1 N-acetylmuramoyl-L-alanine amidase YP_005932447.1 5226802 R 931281 CDS YP_005932448.1 386014171 12522859 complement(5228244..5228717) 1 NC_017530.1 hypothetical protein 5228717 12522859 PPUBIRD1_4685 Pseudomonas putida BIRD-1 hypothetical protein YP_005932448.1 5228244 R 931281 CDS YP_005932449.1 386014172 12522860 complement(5228705..5229565) 1 NC_017530.1 Carbohydrate kinase, YjeF related protein 5229565 12522860 PPUBIRD1_4686 Pseudomonas putida BIRD-1 Carbohydrate kinase, YjeF related protein YP_005932449.1 5228705 R 931281 CDS YP_005932450.1 386014173 12522861 5229631..5230695 1 NC_017530.1 Putative iron-sulfur cluster binding protein 5230695 12522861 PPUBIRD1_4687 Pseudomonas putida BIRD-1 Putative iron-sulfur cluster binding protein YP_005932450.1 5229631 D 931281 CDS YP_005932451.1 386014174 12522862 complement(5230836..5231447) 1 NC_017530.1 hypothetical protein 5231447 12522862 PPUBIRD1_4688 Pseudomonas putida BIRD-1 hypothetical protein YP_005932451.1 5230836 R 931281 CDS YP_005932452.1 386014175 12522863 complement(5231539..5232081) 1 NC_017530.1 Oligoribonuclease; Orn 5232081 orn 12522863 orn Pseudomonas putida BIRD-1 Orn YP_005932452.1 5231539 R 931281 CDS YP_005932453.1 386014176 12522864 5232234..5233265 1 NC_017530.1 Putative ribosome biogenesis GTPase rsgA 5233265 12522864 PPUBIRD1_4690 Pseudomonas putida BIRD-1 Putative ribosome biogenesis GTPase rsgA YP_005932453.1 5232234 D 931281 CDS YP_005932454.1 386014177 12522865 complement(5233439..5234479) 1 NC_017530.1 flagellar motor protein MotB; MotB 5234479 motB 12522865 motB Pseudomonas putida BIRD-1 MotB YP_005932454.1 5233439 R 931281 CDS YP_005932455.1 386014178 12522866 complement(5234483..5235334) 1 NC_017530.1 Flagellar motor protein MotA 5235334 12522866 PPUBIRD1_4692 Pseudomonas putida BIRD-1 Flagellar motor protein MotA YP_005932455.1 5234483 R 931281 CDS YP_005932456.1 386014179 12522867 5235465..5237000 1 NC_017530.1 metal-dependent hydrolase HDOD 5237000 12522867 PPUBIRD1_4693 Pseudomonas putida BIRD-1 metal-dependent hydrolase HDOD YP_005932456.1 5235465 D 931281 CDS YP_005932457.1 386014180 12522868 5237045..5237854 1 NC_017530.1 rhodanese domain protein; protein RhdA 5237854 rhdA 12522868 rhdA Pseudomonas putida BIRD-1 protein RhdA YP_005932457.1 5237045 D 931281 CDS YP_005932458.1 386014181 12522869 5237864..5238727 1 NC_017530.1 Phosphatidylserine decarboxylase proenzyme; Psd 5238727 psd 12522869 psd Pseudomonas putida BIRD-1 Psd YP_005932458.1 5237864 D 931281 CDS YP_005932459.1 386014182 12522870 complement(5238804..5240051) 1 NC_017530.1 phosphoserine phosphatase SerB; SerB protein 5240051 serB 12522870 serB Pseudomonas putida BIRD-1 SerB protein YP_005932459.1 5238804 R 931281 CDS YP_005932460.1 386014183 12522871 5240153..5241610 1 NC_017530.1 hypothetical protein 5241610 12522871 PPUBIRD1_4697 Pseudomonas putida BIRD-1 hypothetical protein YP_005932460.1 5240153 D 931281 CDS YP_005932461.1 386014184 12522872 complement(5242172..5242927) 1 NC_017530.1 hypothetical protein 5242927 12522872 PPUBIRD1_4698 Pseudomonas putida BIRD-1 hypothetical protein YP_005932461.1 5242172 R 931281 CDS YP_005932462.1 386014185 12522873 complement(5243055..5245313) 1 NC_017530.1 DNA topoisomerase 4 subunit A; protein ParC 5245313 parC 12522873 parC Pseudomonas putida BIRD-1 protein ParC YP_005932462.1 5243055 R 931281 CDS YP_005932463.1 386014186 12522874 complement(5245324..5245842) 1 NC_017530.1 hypothetical protein 5245842 12522874 PPUBIRD1_4700 Pseudomonas putida BIRD-1 hypothetical protein YP_005932463.1 5245324 R 931281 CDS YP_005932464.1 386014187 12522875 complement(5245839..5246825) 1 NC_017530.1 hypothetical protein 5246825 12522875 PPUBIRD1_4701 Pseudomonas putida BIRD-1 hypothetical protein YP_005932464.1 5245839 R 931281 CDS YP_005932465.1 386014188 12522876 complement(5246822..5248642) 1 NC_017530.1 DNA topoisomerase 4 subunit B; protein ParE 5248642 parE 12522876 parE Pseudomonas putida BIRD-1 protein ParE YP_005932465.1 5246822 R 931281 CDS YP_005932466.1 386014189 12522877 complement(5248762..5249370) 1 NC_017530.1 hypothetical protein 5249370 12522877 PPUBIRD1_4703 Pseudomonas putida BIRD-1 hypothetical protein YP_005932466.1 5248762 R 931281 CDS YP_005932467.1 386014190 12522878 complement(5249502..5250302) 1 NC_017530.1 Icc protein 5250302 12522878 PPUBIRD1_4704 Pseudomonas putida BIRD-1 Icc protein YP_005932467.1 5249502 R 931281 CDS YP_005932468.1 386014191 12522879 complement(5250388..5250840) 1 NC_017530.1 hypothetical protein 5250840 12522879 PPUBIRD1_4705 Pseudomonas putida BIRD-1 hypothetical protein YP_005932468.1 5250388 R 931281 CDS YP_005932469.1 386014192 12522880 complement(5250831..5251448) 1 NC_017530.1 NUDIX hydrolase 5251448 12522880 PPUBIRD1_4706 Pseudomonas putida BIRD-1 NUDIX hydrolase YP_005932469.1 5250831 R 931281 CDS YP_005932470.1 386014193 12522881 5251634..5252380 1 NC_017530.1 Putative lipoprotein 5252380 12522881 PPUBIRD1_4707 Pseudomonas putida BIRD-1 Putative lipoprotein YP_005932470.1 5251634 D 931281 CDS YP_005932471.1 386014194 12522882 complement(5252349..5253665) 1 NC_017530.1 Putative hydroxymethylpyrimidine transporter CytX 5253665 12522882 PPUBIRD1_4708 Pseudomonas putida BIRD-1 Putative hydroxymethylpyrimidine transporter CytX YP_005932471.1 5252349 R 931281 CDS YP_005932472.1 386014195 12522883 complement(5253777..5255657) 1 NC_017530.1 Phosphomethylpyrimidine synthase; protein ThiC 5255657 thiC 12522883 thiC Pseudomonas putida BIRD-1 protein ThiC YP_005932472.1 5253777 R 931281 CDS YP_005932473.1 386014196 12522884 5256078..5257511 1 NC_017530.1 TolC family type I secretion outer membrane protein 5257511 12522884 PPUBIRD1_4710 Pseudomonas putida BIRD-1 TolC family type I secretion outer membrane protein YP_005932473.1 5256078 D 931281 CDS YP_005932474.1 386014197 12522885 complement(5257626..5258897) 1 NC_017530.1 3-deoxy-D-manno-octulosonic-acid transferase 5258897 12522885 PPUBIRD1_4711 Pseudomonas putida BIRD-1 3-deoxy-D-manno-octulosonic-acid transferase YP_005932474.1 5257626 R 931281 CDS YP_005932475.1 386014198 12522886 complement(5258909..5259799) 1 NC_017530.1 LysR family transcriptional regulator 5259799 12522886 PPUBIRD1_4712 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005932475.1 5258909 R 931281 CDS YP_005932476.1 386014199 12522887 5259886..5260218 1 NC_017530.1 Small multidrug resistance protein 5260218 12522887 PPUBIRD1_4713 Pseudomonas putida BIRD-1 Small multidrug resistance protein YP_005932476.1 5259886 D 931281 CDS YP_005932477.1 386014200 12522888 5260307..5261482 1 NC_017530.1 FAD dependent oxidoreductase 5261482 12522888 PPUBIRD1_4714 Pseudomonas putida BIRD-1 FAD dependent oxidoreductase YP_005932477.1 5260307 D 931281 CDS YP_005932478.1 386014201 12522889 5261479..5262291 1 NC_017530.1 Aldo/keto reductase 5262291 12522889 PPUBIRD1_4715 Pseudomonas putida BIRD-1 Aldo/keto reductase YP_005932478.1 5261479 D 931281 CDS YP_005932479.1 386014202 12522890 5262350..5263318 1 NC_017530.1 hypothetical protein 5263318 12522890 PPUBIRD1_4716 Pseudomonas putida BIRD-1 hypothetical protein YP_005932479.1 5262350 D 931281 CDS YP_005932480.1 386014203 12522891 complement(5263400..5264809) 1 NC_017530.1 Bifunctional protein hldE 5264809 12522891 PPUBIRD1_4717 Pseudomonas putida BIRD-1 Bifunctional protein hldE YP_005932480.1 5263400 R 931281 CDS YP_005932481.1 386014204 12522892 complement(5264952..5266760) 1 NC_017530.1 Lipid A export ATP-binding/permease protein msbA 5266760 12522892 PPUBIRD1_4718 Pseudomonas putida BIRD-1 Lipid A export ATP-binding/permease protein msbA YP_005932481.1 5264952 R 931281 CDS YP_005932482.1 386014205 12522893 complement(5266776..5267951) 1 NC_017530.1 O-antigen polymerase 5267951 12522893 PPUBIRD1_4719 Pseudomonas putida BIRD-1 O-antigen polymerase YP_005932482.1 5266776 R 931281 CDS YP_005932483.1 386014206 12522894 5268052..5268657 1 NC_017530.1 Toluene tolerance protein 5268657 12522894 PPUBIRD1_4720 Pseudomonas putida BIRD-1 Toluene tolerance protein YP_005932483.1 5268052 D 931281 CDS YP_005932484.1 386014207 12522895 complement(5268661..5269587) 1 NC_017530.1 glycosyl transferase 5269587 12522895 PPUBIRD1_4721 Pseudomonas putida BIRD-1 glycosyl transferase YP_005932484.1 5268661 R 931281 CDS YP_005932485.1 386014208 12522896 complement(5269790..5270527) 1 NC_017530.1 hypothetical protein 5270527 12522896 PPUBIRD1_4722 Pseudomonas putida BIRD-1 hypothetical protein YP_005932485.1 5269790 R 931281 CDS YP_005932486.1 386014209 12522897 complement(5270629..5271585) 1 NC_017530.1 hypothetical protein 5271585 12522897 PPUBIRD1_4723 Pseudomonas putida BIRD-1 hypothetical protein YP_005932486.1 5270629 R 931281 CDS YP_005932487.1 386014210 12522898 complement(5271634..5273037) 1 NC_017530.1 LmbE family protein 5273037 12522898 PPUBIRD1_4724 Pseudomonas putida BIRD-1 LmbE family protein YP_005932487.1 5271634 R 931281 CDS YP_005932488.1 386014211 12522899 complement(5273034..5273930) 1 NC_017530.1 Mig-14 family protein 5273930 12522899 PPUBIRD1_4725 Pseudomonas putida BIRD-1 Mig-14 family protein YP_005932488.1 5273034 R 931281 CDS YP_005932489.1 386014212 12522900 complement(5273930..5275060) 1 NC_017530.1 Glycosyl transferase, putative 5275060 12522900 PPUBIRD1_4726 Pseudomonas putida BIRD-1 Glycosyl transferase, putative YP_005932489.1 5273930 R 931281 CDS YP_005932490.1 386014213 12522901 complement(5275044..5276801) 1 NC_017530.1 Carbamoyltransferase 5276801 12522901 PPUBIRD1_4727 Pseudomonas putida BIRD-1 Carbamoyltransferase YP_005932490.1 5275044 R 931281 CDS YP_005932491.1 386014214 12522902 complement(5276994..5277830) 1 NC_017530.1 hypothetical protein 5277830 12522902 PPUBIRD1_4728 Pseudomonas putida BIRD-1 hypothetical protein YP_005932491.1 5276994 R 931281 CDS YP_005932492.1 386014215 12522903 complement(5277937..5279565) 1 NC_017530.1 Sodium/proline symporter; PutP 5279565 putP 12522903 putP Pseudomonas putida BIRD-1 PutP YP_005932492.1 5277937 R 931281 CDS YP_005932493.1 386014216 12522904 5279771..5283724 1 NC_017530.1 Bifunctional protein putA; bifunctional; PutA 5283724 putA 12522904 putA Pseudomonas putida BIRD-1 PutA YP_005932493.1 5279771 D 931281 CDS YP_005932494.1 386014217 12522905 complement(5284258..5284821) 1 NC_017530.1 hypothetical protein 5284821 12522905 PPUBIRD1_4731 Pseudomonas putida BIRD-1 hypothetical protein YP_005932494.1 5284258 R 931281 CDS YP_005932495.1 386014218 12522906 5285084..5286886 1 NC_017530.1 Acyl-CoA dehydrogenase domain-containing protein 5286886 12522906 PPUBIRD1_4732 Pseudomonas putida BIRD-1 Acyl-CoA dehydrogenase domain-containing protein YP_005932495.1 5285084 D 931281 CDS YP_005932496.1 386014219 12522907 5286918..5288360 1 NC_017530.1 TldD/PmbA family protein 5288360 12522907 PPUBIRD1_4733 Pseudomonas putida BIRD-1 TldD/PmbA family protein YP_005932496.1 5286918 D 931281 CDS YP_005932497.1 386014220 12522908 5288360..5289679 1 NC_017530.1 hypothetical protein 5289679 12522908 PPUBIRD1_4734 Pseudomonas putida BIRD-1 hypothetical protein YP_005932497.1 5288360 D 931281 CDS YP_005932498.1 386014221 12522909 5289789..5291216 1 NC_017530.1 EmrB/QacA family drug resistance transporter 5291216 12522909 PPUBIRD1_4735 Pseudomonas putida BIRD-1 EmrB/QacA family drug resistance transporter YP_005932498.1 5289789 D 931281 CDS YP_005932499.1 386014222 12522910 5291281..5292666 1 NC_017530.1 ATP-dependent RNA helicase DbpA 5292666 12522910 PPUBIRD1_4736 Pseudomonas putida BIRD-1 ATP-dependent RNA helicase DbpA YP_005932499.1 5291281 D 931281 CDS YP_005932500.1 386014223 12522911 5292719..5293969 1 NC_017530.1 hypothetical protein 5293969 12522911 PPUBIRD1_4737 Pseudomonas putida BIRD-1 hypothetical protein YP_005932500.1 5292719 D 931281 CDS YP_005932501.1 386014224 12522912 5294002..5296236 1 NC_017530.1 YccS/YhfK family integral membrane protein 5296236 12522912 PPUBIRD1_4738 Pseudomonas putida BIRD-1 YccS/YhfK family integral membrane protein YP_005932501.1 5294002 D 931281 CDS YP_005932502.1 386014225 12522913 complement(5296255..5296992) 1 NC_017530.1 hypothetical protein 5296992 12522913 PPUBIRD1_4739 Pseudomonas putida BIRD-1 hypothetical protein YP_005932502.1 5296255 R 931281 CDS YP_005932503.1 386014226 12522914 5297146..5297598 1 NC_017530.1 Acetyltransferase 5297598 12522914 PPUBIRD1_4740 Pseudomonas putida BIRD-1 Acetyltransferase YP_005932503.1 5297146 D 931281 CDS YP_005932504.1 386014227 12522915 complement(5297624..5297920) 1 NC_017530.1 hypothetical protein 5297920 12522915 PPUBIRD1_4741 Pseudomonas putida BIRD-1 hypothetical protein YP_005932504.1 5297624 R 931281 CDS YP_005932505.1 386014228 12522916 complement(5297933..5298472) 1 NC_017530.1 hypothetical protein 5298472 12522916 PPUBIRD1_4742 Pseudomonas putida BIRD-1 hypothetical protein YP_005932505.1 5297933 R 931281 CDS YP_005932506.1 386014229 12522917 complement(5298473..5300599) 1 NC_017530.1 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 5300599 12522917 PPUBIRD1_4743 Pseudomonas putida BIRD-1 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_005932506.1 5298473 R 931281 CDS YP_005932507.1 386014230 12522918 complement(5300812..5301861) 1 NC_017530.1 Fructose-bisphosphate aldolase; Fda 5301861 fda 12522918 fda Pseudomonas putida BIRD-1 Fda YP_005932507.1 5300812 R 931281 CDS YP_005932508.1 386014231 12522919 complement(5301977..5302306) 1 NC_017530.1 Putative lipoprotein 5302306 12522919 PPUBIRD1_4745 Pseudomonas putida BIRD-1 Putative lipoprotein YP_005932508.1 5301977 R 931281 CDS YP_005932509.1 386014232 12522920 complement(5302385..5302603) 1 NC_017530.1 hypothetical protein 5302603 12522920 PPUBIRD1_4746 Pseudomonas putida BIRD-1 hypothetical protein YP_005932509.1 5302385 R 931281 CDS YP_005932510.1 386014233 12522921 complement(5302636..5303799) 1 NC_017530.1 Phosphoglycerate kinase; hypothetical protein 5303799 pgk 12522921 pgk Pseudomonas putida BIRD-1 hypothetical protein YP_005932510.1 5302636 R 931281 CDS YP_005932511.1 386014234 12522922 complement(5303812..5304870) 1 NC_017530.1 D-erythrose-4-phosphate dehydrogenase; hypothetical protein 5304870 epd 12522922 epd Pseudomonas putida BIRD-1 hypothetical protein YP_005932511.1 5303812 R 931281 CDS YP_005932512.1 386014235 12522923 complement(5305022..5307019) 1 NC_017530.1 Transketolase 2; TktA 5307019 tktA 12522923 tktA Pseudomonas putida BIRD-1 TktA YP_005932512.1 5305022 R 931281 CDS YP_005932513.1 386014236 12522924 5307271..5308263 1 NC_017530.1 ArsR family transcriptional regulator 5308263 12522924 PPUBIRD1_4750 Pseudomonas putida BIRD-1 ArsR family transcriptional regulator YP_005932513.1 5307271 D 931281 CDS YP_005932514.1 386014237 12522925 5308282..5309472 1 NC_017530.1 S-adenosylmethionine synthetase; protein MetK 5309472 metK 12522925 metK Pseudomonas putida BIRD-1 protein MetK YP_005932514.1 5308282 D 931281 CDS YP_005932515.1 386014238 12522926 5309702..5311402 1 NC_017530.1 DNA ligase B; protein LigB 5311402 ligB 12522926 ligB Pseudomonas putida BIRD-1 protein LigB YP_005932515.1 5309702 D 931281 CDS YP_005932516.1 386014239 12522927 5311535..5311927 1 NC_017530.1 hypothetical protein 5311927 12522927 PPUBIRD1_4753 Pseudomonas putida BIRD-1 hypothetical protein YP_005932516.1 5311535 D 931281 CDS YP_005932517.1 386014240 12522928 complement(5312116..5312574) 1 NC_017530.1 Cytochrome c', putative 5312574 12522928 PPUBIRD1_4754 Pseudomonas putida BIRD-1 Cytochrome c', putative YP_005932517.1 5312116 R 931281 CDS YP_005932518.1 386014241 12522929 5312694..5313845 1 NC_017530.1 MltA domain-containing protein 5313845 12522929 PPUBIRD1_4756 Pseudomonas putida BIRD-1 MltA domain-containing protein YP_005932518.1 5312694 D 931281 CDS YP_005932519.1 386014242 12522930 complement(5313896..5314282) 1 NC_017530.1 hypothetical protein 5314282 12522930 PPUBIRD1_4757 Pseudomonas putida BIRD-1 hypothetical protein YP_005932519.1 5313896 R 931281 CDS YP_005932520.1 386014243 12522931 complement(5314311..5315144) 1 NC_017530.1 hypothetical protein 5315144 12522931 PPUBIRD1_4758 Pseudomonas putida BIRD-1 hypothetical protein YP_005932520.1 5314311 R 931281 CDS YP_005932521.1 386014244 12522932 5315427..5316662 1 NC_017530.1 Sodium/hydrogen exchanger 5316662 12522932 PPUBIRD1_4759 Pseudomonas putida BIRD-1 Sodium/hydrogen exchanger YP_005932521.1 5315427 D 931281 CDS YP_005932522.1 386014245 12522933 complement(5316775..5317176) 1 NC_017530.1 Thioesterase superfamily protein 5317176 12522933 PPUBIRD1_4760 Pseudomonas putida BIRD-1 Thioesterase superfamily protein YP_005932522.1 5316775 R 931281 CDS YP_005932523.1 386014246 12522934 5317472..5318881 1 NC_017530.1 adenosylhomocysteinase 5318881 12522934 PPUBIRD1_4761 Pseudomonas putida BIRD-1 adenosylhomocysteinase YP_005932523.1 5317472 D 931281 CDS YP_005932524.1 386014247 12522935 5319036..5319881 1 NC_017530.1 5,10-methylenetetrahydrofolate reductase 5319881 12522935 PPUBIRD1_4762 Pseudomonas putida BIRD-1 5,10-methylenetetrahydrofolate reductase YP_005932524.1 5319036 D 931281 CDS YP_005932525.1 386014248 12522936 5319975..5321051 1 NC_017530.1 hypothetical protein 5321051 12522936 PPUBIRD1_4763 Pseudomonas putida BIRD-1 hypothetical protein YP_005932525.1 5319975 D 931281 CDS YP_005932526.1 386014249 12522937 5321275..5322009 1 NC_017530.1 Extracellular solute-binding protein 5322009 12522937 PPUBIRD1_4764 Pseudomonas putida BIRD-1 Extracellular solute-binding protein YP_005932526.1 5321275 D 931281 CDS YP_005932527.1 386014250 12522938 5322330..5324108 1 NC_017530.1 DEAD/DEAH box helicase 5324108 12522938 PPUBIRD1_4766 Pseudomonas putida BIRD-1 DEAD/DEAH box helicase YP_005932527.1 5322330 D 931281 CDS YP_005932528.1 386014251 12522939 complement(5324249..5324827) 1 NC_017530.1 hypothetical protein 5324827 12522939 PPUBIRD1_4767 Pseudomonas putida BIRD-1 hypothetical protein YP_005932528.1 5324249 R 931281 CDS YP_005932529.1 386014252 12522940 complement(5324860..5325411) 1 NC_017530.1 Cytochrome B561 5325411 12522940 PPUBIRD1_4768 Pseudomonas putida BIRD-1 Cytochrome B561 YP_005932529.1 5324860 R 931281 CDS YP_005932530.1 386014253 12522941 complement(5325606..5327465) 1 NC_017530.1 Amine oxidase 5327465 12522941 PPUBIRD1_4769 Pseudomonas putida BIRD-1 Amine oxidase YP_005932530.1 5325606 R 931281 CDS YP_005932531.1 386014254 12522942 5327838..5329244 1 NC_017530.1 Adenosylmethionine--8-amino-7-oxononanoate transaminase 5329244 12522942 PPUBIRD1_4771 Pseudomonas putida BIRD-1 Adenosylmethionine--8-amino-7-oxononanoate transaminase YP_005932531.1 5327838 D 931281 CDS YP_005932532.1 386014255 12522943 5329393..5330112 1 NC_017530.1 hypothetical protein 5330112 12522943 PPUBIRD1_4772 Pseudomonas putida BIRD-1 hypothetical protein YP_005932532.1 5329393 D 931281 CDS YP_005932533.1 386014256 12522944 complement(5330113..5330730) 1 NC_017530.1 Hemolysin III family channel protein 5330730 12522944 PPUBIRD1_4773 Pseudomonas putida BIRD-1 Hemolysin III family channel protein YP_005932533.1 5330113 R 931281 CDS YP_005932534.1 386014257 12522945 complement(5330938..5331411) 1 NC_017530.1 chemotaxis protein CheW 5331411 12522945 PPUBIRD1_4774 Pseudomonas putida BIRD-1 chemotaxis protein CheW YP_005932534.1 5330938 R 931281 CDS YP_005932535.1 386014258 12522946 complement(5331404..5336344) 1 NC_017530.1 CheA signal transduction histidine kinase 5336344 12522946 PPUBIRD1_4775 Pseudomonas putida BIRD-1 CheA signal transduction histidine kinase YP_005932535.1 5331404 R 931281 CDS YP_005932536.1 386014259 12522947 complement(5336357..5338417) 1 NC_017530.1 Protein pilJ 5338417 12522947 PPUBIRD1_4776 Pseudomonas putida BIRD-1 Protein pilJ YP_005932536.1 5336357 R 931281 CDS YP_005932537.1 386014260 12522948 complement(5338429..5338983) 1 NC_017530.1 Putative CheW protein 5338983 12522948 PPUBIRD1_4777 Pseudomonas putida BIRD-1 Putative CheW protein YP_005932537.1 5338429 R 931281 CDS YP_005932538.1 386014261 12522949 complement(5338980..5339345) 1 NC_017530.1 Response regulator receiver protein 5339345 12522949 PPUBIRD1_4778 Pseudomonas putida BIRD-1 Response regulator receiver protein YP_005932538.1 5338980 R 931281 CDS YP_005932539.1 386014262 12522950 complement(5339393..5339731) 1 NC_017530.1 response regulator receiver protein; PilG 5339731 pilG 12522950 pilG Pseudomonas putida BIRD-1 PilG YP_005932539.1 5339393 R 931281 CDS YP_005932540.1 386014263 12522951 5340033..5340986 1 NC_017530.1 Glutathione synthetase; GshB 5340986 gshB 12522951 gshB Pseudomonas putida BIRD-1 GshB YP_005932540.1 5340033 D 931281 CDS YP_005932541.1 386014264 12522952 5341078..5341983 1 NC_017530.1 TonB family protein 5341983 12522952 PPUBIRD1_4782 Pseudomonas putida BIRD-1 TonB family protein YP_005932541.1 5341078 D 931281 CDS YP_005932542.1 386014265 12522953 5342155..5342724 1 NC_017530.1 AlgH 5342724 algH 12522953 algH Pseudomonas putida BIRD-1 AlgH YP_005932542.1 5342155 D 931281 CDS YP_005932543.1 386014266 12522954 5342724..5343149 1 NC_017530.1 Putative Holliday junction resolvase 5343149 12522954 PPUBIRD1_4784 Pseudomonas putida BIRD-1 Putative Holliday junction resolvase YP_005932543.1 5342724 D 931281 CDS YP_005932544.1 386014267 12522955 5343199..5343717 1 NC_017530.1 pyrimidine regulatory protein PyrR; PyrR protein 5343717 pyrR 12522955 pyrR Pseudomonas putida BIRD-1 PyrR protein YP_005932544.1 5343199 D 931281 CDS YP_005932545.1 386014268 12522956 5343730..5344734 1 NC_017530.1 Aspartate carbamoyltransferase; protein PyrB 5344734 pyrB 12522956 pyrB Pseudomonas putida BIRD-1 protein PyrB YP_005932545.1 5343730 D 931281 CDS YP_005932546.1 386014269 12522957 5344731..5346002 1 NC_017530.1 Dihydroorotase-like protein; PyrC_2 5346002 pyrC_2 12522957 pyrC_2 Pseudomonas putida BIRD-1 PyrC_2 YP_005932546.1 5344731 D 931281 CDS YP_005932547.1 386014270 12522958 5346256..5346744 1 NC_017530.1 ATP-dependent protease hslV 5346744 12522958 PPUBIRD1_4788 Pseudomonas putida BIRD-1 ATP-dependent protease hslV YP_005932547.1 5346256 D 931281 CDS YP_005932548.1 386014271 12522959 5346821..5348164 1 NC_017530.1 ATP-dependent hsl protease ATP-binding subunit hslU; protein HslU 5348164 hslU 12522959 hslU Pseudomonas putida BIRD-1 protein HslU YP_005932548.1 5346821 D 931281 CDS YP_005932549.1 386014272 12522960 5348330..5348707 1 NC_017530.1 hypothetical protein 5348707 12522960 PPUBIRD1_4790 Pseudomonas putida BIRD-1 hypothetical protein YP_005932549.1 5348330 D 931281 CDS YP_005932550.1 386014273 12522961 5348976..5350655 1 NC_017530.1 Poly(3-hydroxyalkanoate) polymerase 1; PhaA 5350655 phaA 12522961 phaA Pseudomonas putida BIRD-1 PhaA YP_005932550.1 5348976 D 931281 CDS YP_005932551.1 386014274 12522962 5350718..5351569 1 NC_017530.1 Poly(3-hydroxyalkanoate) depolymerase 5351569 12522962 PPUBIRD1_4792 Pseudomonas putida BIRD-1 Poly(3-hydroxyalkanoate) depolymerase YP_005932551.1 5350718 D 931281 CDS YP_005932552.1 386014275 12522963 5351619..5353301 1 NC_017530.1 Poly(3-hydroxyalkanoate) polymerase 2; PhaC protein 5353301 phaC 12522963 phaC Pseudomonas putida BIRD-1 PhaC protein YP_005932552.1 5351619 D 931281 CDS YP_005932553.1 386014276 12522964 5353314..5353928 1 NC_017530.1 TetR family transcriptional regulator 5353928 12522964 PPUBIRD1_4794 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005932553.1 5353314 D 931281 CDS YP_005932554.1 386014277 12522965 complement(5354050..5354811) 1 NC_017530.1 phaF protein; protein PhaF 5354811 phaF 12522965 phaF Pseudomonas putida BIRD-1 protein PhaF YP_005932554.1 5354050 R 931281 CDS YP_005932555.1 386014278 12522966 complement(5354822..5355241) 1 NC_017530.1 Poly(hydroxyalkanoate) granule-associated protein 5355241 12522966 PPUBIRD1_4796 Pseudomonas putida BIRD-1 Poly(hydroxyalkanoate) granule-associated protein YP_005932555.1 5354822 R 931281 CDS YP_005932556.1 386014279 12522967 5355421..5360181 1 NC_017530.1 hypothetical protein 5360181 12522967 PPUBIRD1_4797 Pseudomonas putida BIRD-1 hypothetical protein YP_005932556.1 5355421 D 931281 CDS YP_005932557.1 386014280 12522968 complement(5360200..5360475) 1 NC_017530.1 hypothetical protein 5360475 12522968 PPUBIRD1_4798 Pseudomonas putida BIRD-1 hypothetical protein YP_005932557.1 5360200 R 931281 CDS YP_005932558.1 386014281 12522969 5360600..5361370 1 NC_017530.1 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE; UbiE protein 5361370 ubiE 12522969 ubiE Pseudomonas putida BIRD-1 UbiE protein YP_005932558.1 5360600 D 931281 CDS YP_005932559.1 386014282 12522970 5361370..5361993 1 NC_017530.1 hypothetical protein 5361993 12522970 PPUBIRD1_4800 Pseudomonas putida BIRD-1 hypothetical protein YP_005932559.1 5361370 D 931281 CDS YP_005932560.1 386014283 12522971 5361990..5363612 1 NC_017530.1 ubiquinone biosynthesis protein ubiB 5363612 12522971 PPUBIRD1_4801 Pseudomonas putida BIRD-1 ubiquinone biosynthesis protein ubiB YP_005932560.1 5361990 D 931281 CDS YP_005932561.1 386014284 12522972 5363685..5364077 1 NC_017530.1 Phosphoribosyl-AMP cyclohydrolase; protein HisI 5364077 hisI 12522972 hisI Pseudomonas putida BIRD-1 protein HisI YP_005932561.1 5363685 D 931281 CDS YP_005932562.1 386014285 12522973 5364052..5364414 1 NC_017530.1 Phosphoribosyl-ATP pyrophosphatase; HisE 5364414 hisE 12522973 hisE Pseudomonas putida BIRD-1 HisE YP_005932562.1 5364052 D 931281 CDS YP_005932563.1 386014286 12522974 5364496..5364768 1 NC_017530.1 twin arginine translocase protein A; TatA_2 5364768 tatA_2 12522974 tatA_2 Pseudomonas putida BIRD-1 TatA_2 YP_005932563.1 5364496 D 931281 CDS YP_005932564.1 386014287 12522975 5364772..5365158 1 NC_017530.1 sec-independent translocase; TatB 5365158 tatB 12522975 tatB Pseudomonas putida BIRD-1 TatB YP_005932564.1 5364772 D 931281 CDS YP_005932565.1 386014288 12522976 5365155..5365943 1 NC_017530.1 Sec-independent protein translocase, TatC subunit; TatC 5365943 tatC 12522976 tatC Pseudomonas putida BIRD-1 TatC YP_005932565.1 5365155 D 931281 CDS YP_005932566.1 386014289 12522977 5365940..5366647 1 NC_017530.1 hypothetical protein 5366647 12522977 PPUBIRD1_4807 Pseudomonas putida BIRD-1 hypothetical protein YP_005932566.1 5365940 D 931281 CDS YP_005932567.1 386014290 12522978 5366749..5368665 1 NC_017530.1 methyl-accepting chemotaxis sensory transducer 5368665 12522978 PPUBIRD1_4808 Pseudomonas putida BIRD-1 methyl-accepting chemotaxis sensory transducer YP_005932567.1 5366749 D 931281 CDS YP_005932568.1 386014291 12522979 5368991..5370934 1 NC_017530.1 methyl-accepting chemotaxis sensory transducer 5370934 12522979 PPUBIRD1_4809 Pseudomonas putida BIRD-1 methyl-accepting chemotaxis sensory transducer YP_005932568.1 5368991 D 931281 CDS YP_005932569.1 386014292 12522980 complement(5371044..5371778) 1 NC_017530.1 Amino acid ABC transporter ATP-binding protein 5371778 12522980 PPUBIRD1_4810 Pseudomonas putida BIRD-1 Amino acid ABC transporter ATP-binding protein YP_005932569.1 5371044 R 931281 CDS YP_005932570.1 386014293 12522981 complement(5371771..5372733) 1 NC_017530.1 Polar amino acid ABC transporter, inner membrane subunit 5372733 12522981 PPUBIRD1_4811 Pseudomonas putida BIRD-1 Polar amino acid ABC transporter, inner membrane subunit YP_005932570.1 5371771 R 931281 CDS YP_005932571.1 386014294 12522982 complement(5372813..5373613) 1 NC_017530.1 amino acid ABC transporter substrate-binding protein 5373613 12522982 PPUBIRD1_4812 Pseudomonas putida BIRD-1 amino acid ABC transporter substrate-binding protein YP_005932571.1 5372813 R 931281 CDS YP_005932572.1 386014295 12522983 complement(5373907..5376360) 1 NC_017530.1 Glucans biosynthesis glucosyltransferase H 5376360 12522983 PPUBIRD1_4813 Pseudomonas putida BIRD-1 Glucans biosynthesis glucosyltransferase H YP_005932572.1 5373907 R 931281 CDS YP_005932573.1 386014296 12522984 complement(5376473..5378134) 1 NC_017530.1 Glucans biosynthesis protein G; MdoG 5378134 mdoG 12522984 mdoG Pseudomonas putida BIRD-1 MdoG YP_005932573.1 5376473 R 931281 CDS YP_005932574.1 386014297 12522985 complement(5378458..5378895) 1 NC_017530.1 D-tyrosyl-tRNA(Tyr) deacylase; DtD 5378895 dtD 12522985 dtD Pseudomonas putida BIRD-1 DtD YP_005932574.1 5378458 R 931281 CDS YP_005932575.1 386014298 12522986 complement(5378892..5379863) 1 NC_017530.1 proline iminopeptidase; Pip 5379863 pip 12522986 pip Pseudomonas putida BIRD-1 Pip YP_005932575.1 5378892 R 931281 CDS YP_005932576.1 386014299 12522987 complement(5380033..5380836) 1 NC_017530.1 N-formylglutamate amidohydrolase; HutG 5380836 hutG 12522987 hutG Pseudomonas putida BIRD-1 HutG YP_005932576.1 5380033 R 931281 CDS YP_005932577.1 386014300 12522988 complement(5380847..5382052) 1 NC_017530.1 Imidazolonepropionase 5382052 12522988 PPUBIRD1_4818 Pseudomonas putida BIRD-1 Imidazolonepropionase YP_005932577.1 5380847 R 931281 CDS YP_005932578.1 386014301 12522989 complement(5382068..5383471) 1 NC_017530.1 Amino acid permease-associated region 5383471 12522989 PPUBIRD1_4819 Pseudomonas putida BIRD-1 Amino acid permease-associated region YP_005932578.1 5382068 R 931281 CDS YP_005932579.1 386014302 12522990 complement(5383629..5385161) 1 NC_017530.1 histidine ammonia-lyase 5385161 12522990 PPUBIRD1_4820 Pseudomonas putida BIRD-1 histidine ammonia-lyase YP_005932579.1 5383629 R 931281 CDS YP_005932580.1 386014303 12522991 complement(5385270..5386943) 1 NC_017530.1 Urocanate hydratase; protein HutU 5386943 hutU 12522991 hutU Pseudomonas putida BIRD-1 protein HutU YP_005932580.1 5385270 R 931281 CDS YP_005932581.1 386014304 12522992 complement(5387378..5387950) 1 NC_017530.1 hypothetical protein 5387950 12522992 PPUBIRD1_4823 Pseudomonas putida BIRD-1 hypothetical protein YP_005932581.1 5387378 R 931281 CDS YP_005932582.1 386014305 12522993 complement(5387947..5388657) 1 NC_017530.1 histidine utilization repressor; protein HutC 5388657 hutC 12522993 hutC Pseudomonas putida BIRD-1 protein HutC YP_005932582.1 5387947 R 931281 CDS YP_005932583.1 386014306 12522994 5388802..5390166 1 NC_017530.1 N-formimino-L-glutamate deiminase 5390166 12522994 PPUBIRD1_4825 Pseudomonas putida BIRD-1 N-formimino-L-glutamate deiminase YP_005932583.1 5388802 D 931281 CDS YP_005932584.1 386014307 12522995 complement(5390320..5390892) 1 NC_017530.1 Outer membrane lipoprotein Blc, putative 5390892 12522995 PPUBIRD1_4826 Pseudomonas putida BIRD-1 Outer membrane lipoprotein Blc, putative YP_005932584.1 5390320 R 931281 CDS YP_005932585.1 386014308 12522996 complement(5390889..5391143) 1 NC_017530.1 hypothetical protein 5391143 12522996 PPUBIRD1_4827 Pseudomonas putida BIRD-1 hypothetical protein YP_005932585.1 5390889 R 931281 CDS YP_005932586.1 386014309 12522997 complement(5391371..5391967) 1 NC_017530.1 hypothetical protein 5391967 12522997 PPUBIRD1_4828 Pseudomonas putida BIRD-1 hypothetical protein YP_005932586.1 5391371 R 931281 CDS YP_005932587.1 386014310 12522998 complement(5391971..5392981) 1 NC_017530.1 Fructose-1,6-bisphosphatase class 1; hypothetical protein 5392981 fbp 12522998 fbp Pseudomonas putida BIRD-1 hypothetical protein YP_005932587.1 5391971 R 931281 CDS YP_005932588.1 386014311 12522999 complement(5393219..5395669) 1 NC_017530.1 Glycogen phosphorylase; GlgP 5395669 glgP 12522999 glgP Pseudomonas putida BIRD-1 GlgP YP_005932588.1 5393219 R 931281 CDS YP_005932589.1 386014312 12523000 5395800..5396258 1 NC_017530.1 hypothetical protein 5396258 12523000 PPUBIRD1_4831 Pseudomonas putida BIRD-1 hypothetical protein YP_005932589.1 5395800 D 931281 CDS YP_005932590.1 386014313 12523001 complement(5396357..5397778) 1 NC_017530.1 hypothetical protein 5397778 12523001 PPUBIRD1_4832 Pseudomonas putida BIRD-1 hypothetical protein YP_005932590.1 5396357 R 931281 CDS YP_005932591.1 386014314 12523002 complement(5397964..5399784) 1 NC_017530.1 GTP-binding protein typA/BipA 5399784 12523002 PPUBIRD1_4833 Pseudomonas putida BIRD-1 GTP-binding protein typA/BipA YP_005932591.1 5397964 R 931281 CDS YP_005932592.1 386014315 12523003 complement(5399913..5401367) 1 NC_017530.1 tRNA sulfurtransferase; ThiI 5401367 thiI 12523003 thiI Pseudomonas putida BIRD-1 ThiI YP_005932592.1 5399913 R 931281 CDS YP_005932593.1 386014316 12523004 5401838..5403244 1 NC_017530.1 Glutamine synthetase; protein GlnA 5403244 glnA 12523004 glnA Pseudomonas putida BIRD-1 protein GlnA YP_005932593.1 5401838 D 931281 CDS YP_005932594.1 386014317 12523005 5403393..5403935 1 NC_017530.1 chorismate mutase 5403935 12523005 PPUBIRD1_4836 Pseudomonas putida BIRD-1 chorismate mutase YP_005932594.1 5403393 D 931281 CDS YP_005932595.1 386014318 12523006 5404203..5405288 1 NC_017530.1 signal transduction histidine kinase, nitrogen specific, NtrB; protein NtrB 5405288 ntrB 12523006 ntrB Pseudomonas putida BIRD-1 protein NtrB YP_005932595.1 5404203 D 931281 CDS YP_005932596.1 386014319 12523007 5405285..5406721 1 NC_017530.1 nitrogen metabolism transcriptional regulator NtrC; NtrC 5406721 ntrC 12523007 ntrC Pseudomonas putida BIRD-1 NtrC YP_005932596.1 5405285 D 931281 CDS YP_005932597.1 386014320 12523008 complement(5407180..5407617) 1 NC_017530.1 hypothetical protein 5407617 12523008 PPUBIRD1_4839 Pseudomonas putida BIRD-1 hypothetical protein YP_005932597.1 5407180 R 931281 CDS YP_005932598.1 386014321 12523009 5407616..5408077 1 NC_017530.1 RNA methyltransferase 5408077 12523009 PPUBIRD1_4840 Pseudomonas putida BIRD-1 RNA methyltransferase YP_005932598.1 5407616 D 931281 CDS YP_005932599.1 386014322 12523010 complement(5408232..5408717) 1 NC_017530.1 Protein-export protein secB; SecB 5408717 secB 12523010 secB Pseudomonas putida BIRD-1 SecB YP_005932599.1 5408232 R 931281 CDS YP_005932600.1 386014323 12523011 complement(5408757..5409011) 1 NC_017530.1 glutaredoxin 3; GrxC 5409011 grxC 12523011 grxC Pseudomonas putida BIRD-1 GrxC YP_005932600.1 5408757 R 931281 CDS YP_005932601.1 386014324 12523012 complement(5409013..5409426) 1 NC_017530.1 rhodanese domain-containing protein 5409426 12523012 PPUBIRD1_4843 Pseudomonas putida BIRD-1 rhodanese domain-containing protein YP_005932601.1 5409013 R 931281 CDS YP_005932602.1 386014325 12523013 5409634..5411169 1 NC_017530.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; protein Pgm 5411169 pgm 12523013 pgm Pseudomonas putida BIRD-1 protein Pgm YP_005932602.1 5409634 D 931281 CDS YP_005932603.1 386014326 12523014 5411310..5412626 1 NC_017530.1 M24/M37 family peptidase 5412626 12523014 PPUBIRD1_4845 Pseudomonas putida BIRD-1 M24/M37 family peptidase YP_005932603.1 5411310 D 931281 CDS YP_005932604.1 386014327 12523015 5412861..5414177 1 NC_017530.1 Carboxyl-terminal protease 5414177 12523015 PPUBIRD1_4846 Pseudomonas putida BIRD-1 Carboxyl-terminal protease YP_005932604.1 5412861 D 931281 CDS YP_005932605.1 386014328 12523016 5414186..5414953 1 NC_017530.1 hypothetical protein 5414953 12523016 PPUBIRD1_4847 Pseudomonas putida BIRD-1 hypothetical protein YP_005932605.1 5414186 D 931281 CDS YP_005932606.1 386014329 12523017 complement(5414984..5419651) 1 NC_017530.1 hypothetical protein 5419651 12523017 PPUBIRD1_4848 Pseudomonas putida BIRD-1 hypothetical protein YP_005932606.1 5414984 R 931281 CDS YP_005932607.1 386014330 12523018 complement(5419802..5424487) 1 NC_017530.1 hypothetical protein 5424487 12523018 PPUBIRD1_4849 Pseudomonas putida BIRD-1 hypothetical protein YP_005932607.1 5419802 R 931281 CDS YP_005932608.1 386014331 12523019 complement(5424605..5426608) 1 NC_017530.1 Choline/carnitine/betaine transporter 5426608 12523019 PPUBIRD1_4850 Pseudomonas putida BIRD-1 Choline/carnitine/betaine transporter YP_005932608.1 5424605 R 931281 CDS YP_005932609.1 386014332 12523020 5427084..5427740 1 NC_017530.1 Transcriptional regulator BetI 5427740 12523020 PPUBIRD1_4851 Pseudomonas putida BIRD-1 Transcriptional regulator BetI YP_005932609.1 5427084 D 931281 CDS YP_005932610.1 386014333 12523021 5427780..5429252 1 NC_017530.1 Betaine aldehyde dehydrogenase; BetB 5429252 betB 12523021 betB Pseudomonas putida BIRD-1 BetB YP_005932610.1 5427780 D 931281 CDS YP_005932611.1 386014334 12523022 5429330..5431027 1 NC_017530.1 choline dehydrogenase 5431027 12523022 PPUBIRD1_4853 Pseudomonas putida BIRD-1 choline dehydrogenase YP_005932611.1 5429330 D 931281 CDS YP_005932612.1 386014335 12523023 complement(5431070..5433220) 1 NC_017530.1 hypothetical protein 5433220 12523023 PPUBIRD1_4854 Pseudomonas putida BIRD-1 hypothetical protein YP_005932612.1 5431070 R 931281 CDS YP_005932613.1 386014336 12523024 5433398..5435140 1 NC_017530.1 CvrA-like cell volume regulation protein 5435140 12523024 PPUBIRD1_4855 Pseudomonas putida BIRD-1 CvrA-like cell volume regulation protein YP_005932613.1 5433398 D 931281 CDS YP_005932614.1 386014337 12523025 5435176..5438484 1 NC_017530.1 Potassium efflux system kefA 5438484 12523025 PPUBIRD1_4856 Pseudomonas putida BIRD-1 Potassium efflux system kefA YP_005932614.1 5435176 D 931281 CDS YP_005932615.1 386014338 12523026 5438666..5440126 1 NC_017530.1 hypothetical protein 5440126 12523026 PPUBIRD1_4857 Pseudomonas putida BIRD-1 hypothetical protein YP_005932615.1 5438666 D 931281 CDS YP_005932616.1 386014339 12523027 5440257..5440691 1 NC_017530.1 Thioredoxin 5440691 12523027 PPUBIRD1_4858 Pseudomonas putida BIRD-1 Thioredoxin YP_005932616.1 5440257 D 931281 CDS YP_005932617.1 386014340 12523028 complement(5440688..5441461) 1 NC_017530.1 Cobyrinic acid a,c-diamide synthase 5441461 12523028 PPUBIRD1_4859 Pseudomonas putida BIRD-1 Cobyrinic acid a,c-diamide synthase YP_005932617.1 5440688 R 931281 CDS YP_005932618.1 386014341 12523029 complement(5441538..5442437) 1 NC_017530.1 LysR family transcriptional regulator 5442437 12523029 PPUBIRD1_4860 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005932618.1 5441538 R 931281 CDS YP_005932619.1 386014342 12523030 5442603..5443790 1 NC_017530.1 Major facilitator family transporter 5443790 12523030 PPUBIRD1_4861 Pseudomonas putida BIRD-1 Major facilitator family transporter YP_005932619.1 5442603 D 931281 CDS YP_005932620.1 386014343 12523031 complement(5443858..5444205) 1 NC_017530.1 hypothetical protein 5444205 12523031 PPUBIRD1_4862 Pseudomonas putida BIRD-1 hypothetical protein YP_005932620.1 5443858 R 931281 CDS YP_005932621.1 386014344 12523032 complement(5444325..5445389) 1 NC_017530.1 Uroporphyrinogen decarboxylase; HemE protein 5445389 hemE 12523032 hemE Pseudomonas putida BIRD-1 HemE protein YP_005932621.1 5444325 R 931281 CDS YP_005932622.1 386014345 12523033 complement(5445584..5447002) 1 NC_017530.1 Glutamate synthase [NADPH] small chain; GltD 5447002 gltD 12523033 gltD Pseudomonas putida BIRD-1 GltD YP_005932622.1 5445584 R 931281 CDS YP_005932623.1 386014346 12523034 complement(5447126..5451571) 1 NC_017530.1 Glutamate synthase [NADPH] large chain; protein GltB 5451571 gltB 12523034 gltB Pseudomonas putida BIRD-1 protein GltB YP_005932623.1 5447126 R 931281 CDS YP_005932624.1 386014347 12523035 complement(5451945..5453534) 1 NC_017530.1 Sporulation domain-containing protein 5453534 12523035 PPUBIRD1_4866 Pseudomonas putida BIRD-1 Sporulation domain-containing protein YP_005932624.1 5451945 R 931281 CDS YP_005932625.1 386014348 12523036 complement(5453550..5454680) 1 NC_017530.1 3-dehydroquinate synthase; AroB 5454680 aroB 12523036 aroB Pseudomonas putida BIRD-1 AroB YP_005932625.1 5453550 R 931281 CDS YP_005932626.1 386014349 12523037 complement(5454744..5455235) 1 NC_017530.1 Shikimate kinase; protein AroK 5455235 aroK 12523037 aroK Pseudomonas putida BIRD-1 protein AroK YP_005932626.1 5454744 R 931281 CDS YP_005932627.1 386014350 12523038 complement(5455267..5456421) 1 NC_017530.1 type IV pilus secretin PilQ; protein PilQ 5456421 pilQ 12523038 pilQ Pseudomonas putida BIRD-1 protein PilQ YP_005932627.1 5455267 R 931281 CDS YP_005932628.1 386014351 12523039 complement(5456453..5457454) 1 NC_017530.1 Type IV pili biogenesis protein 5457454 12523039 PPUBIRD1_4870 Pseudomonas putida BIRD-1 Type IV pili biogenesis protein YP_005932628.1 5456453 R 931281 CDS YP_005932629.1 386014352 12523040 complement(5457466..5458002) 1 NC_017530.1 fimbrial assembly family protein; PilN 5458002 pilN 12523040 pilN Pseudomonas putida BIRD-1 PilN YP_005932629.1 5457466 R 931281 CDS YP_005932630.1 386014353 12523041 complement(5457999..5458880) 1 NC_017530.1 Type IV pili biogenesis protein PilM, putative 5458880 12523041 PPUBIRD1_4872 Pseudomonas putida BIRD-1 Type IV pili biogenesis protein PilM, putative YP_005932630.1 5457999 R 931281 CDS YP_005932631.1 386014354 12523042 5459234..5461537 1 NC_017530.1 Penicillin-binding protein 1A 5461537 12523042 PPUBIRD1_4873 Pseudomonas putida BIRD-1 Penicillin-binding protein 1A YP_005932631.1 5459234 D 931281 CDS YP_005932632.1 386014355 12523043 complement(5461718..5462986) 1 NC_017530.1 malic enzyme; protein MaeB 5462986 maeB 12523043 maeB Pseudomonas putida BIRD-1 protein MaeB YP_005932632.1 5461718 R 931281 CDS YP_005932633.1 386014356 12523044 complement(5463164..5463985) 1 NC_017530.1 Nuclease 5463985 12523044 PPUBIRD1_4875 Pseudomonas putida BIRD-1 Nuclease YP_005932633.1 5463164 R 931281 CDS YP_005932634.1 386014357 12523045 complement(5463988..5464203) 1 NC_017530.1 50S ribosomal protein L31; protein RpmE 5464203 rpmE 12523045 rpmE Pseudomonas putida BIRD-1 protein RpmE YP_005932634.1 5463988 R 931281 CDS YP_005932635.1 386014358 12523046 5464371..5466590 1 NC_017530.1 primosome assembly protein PriA; PriA 5466590 priA 12523046 priA Pseudomonas putida BIRD-1 PriA YP_005932635.1 5464371 D 931281 CDS YP_005932636.1 386014359 12523047 5466778..5468514 1 NC_017530.1 Arginyl-tRNA synthetase; protein ArgS 5468514 argS 12523047 argS Pseudomonas putida BIRD-1 protein ArgS YP_005932636.1 5466778 D 931281 CDS YP_005932637.1 386014360 12523048 5468516..5469214 1 NC_017530.1 Sporulation domain-containing protein 5469214 12523048 PPUBIRD1_4879 Pseudomonas putida BIRD-1 Sporulation domain-containing protein YP_005932637.1 5468516 D 931281 CDS YP_005932638.1 386014361 12523049 complement(5469305..5469724) 1 NC_017530.1 hypothetical protein 5469724 12523049 PPUBIRD1_4880 Pseudomonas putida BIRD-1 hypothetical protein YP_005932638.1 5469305 R 931281 CDS YP_005932639.1 386014362 12523050 5469891..5470514 1 NC_017530.1 NLP/P60 protein 5470514 12523050 PPUBIRD1_4881 Pseudomonas putida BIRD-1 NLP/P60 protein YP_005932639.1 5469891 D 931281 CDS YP_005932640.1 386014363 12523051 complement(5470631..5471629) 1 NC_017530.1 Twitching motility protein 5471629 12523051 PPUBIRD1_4882 Pseudomonas putida BIRD-1 Twitching motility protein YP_005932640.1 5470631 R 931281 CDS YP_005932641.1 386014364 12523052 5471695..5472381 1 NC_017530.1 Alanine racemase domain protein 5472381 12523052 PPUBIRD1_4883 Pseudomonas putida BIRD-1 Alanine racemase domain protein YP_005932641.1 5471695 D 931281 CDS YP_005932642.1 386014365 12523053 5472420..5473238 1 NC_017530.1 Pyrroline-5-carboxylate reductase 5473238 12523053 PPUBIRD1_4884 Pseudomonas putida BIRD-1 Pyrroline-5-carboxylate reductase YP_005932642.1 5472420 D 931281 CDS YP_005932643.1 386014366 12523054 5473249..5473839 1 NC_017530.1 hypothetical protein 5473839 12523054 PPUBIRD1_4885 Pseudomonas putida BIRD-1 hypothetical protein YP_005932643.1 5473249 D 931281 CDS YP_005932644.1 386014367 12523055 5473939..5475078 1 NC_017530.1 Homoserine O-acetyltransferase; MetX 5475078 metX 12523055 metX Pseudomonas putida BIRD-1 MetX YP_005932644.1 5473939 D 931281 CDS YP_005932645.1 386014368 12523056 5475086..5475706 1 NC_017530.1 methionine biosynthesis protein MetW; MetW 5475706 metW 12523056 metW Pseudomonas putida BIRD-1 MetW YP_005932645.1 5475086 D 931281 CDS YP_005932646.1 386014369 12523057 5475729..5476163 1 NC_017530.1 hypothetical protein 5476163 12523057 PPUBIRD1_4888 Pseudomonas putida BIRD-1 hypothetical protein YP_005932646.1 5475729 D 931281 CDS YP_005932647.1 386014370 12523058 5476163..5476756 1 NC_017530.1 nucleoside-triphosphatase 5476756 12523058 PPUBIRD1_4889 Pseudomonas putida BIRD-1 nucleoside-triphosphatase YP_005932647.1 5476163 D 931281 CDS YP_005932648.1 386014371 12523059 5476762..5477928 1 NC_017530.1 Coproporphyrinogen III oxidase 5477928 12523059 PPUBIRD1_4890 Pseudomonas putida BIRD-1 Coproporphyrinogen III oxidase YP_005932648.1 5476762 D 931281 CDS YP_005932649.1 386014372 12523060 5477938..5478264 1 NC_017530.1 hypothetical protein 5478264 12523060 PPUBIRD1_4891 Pseudomonas putida BIRD-1 hypothetical protein YP_005932649.1 5477938 D 931281 CDS YP_005932650.1 386014373 12523061 complement(5479006..5479728) 1 NC_017530.1 tRNA (guanine-N(7)-)-methyltransferase; TrmB 5479728 trmB 12523061 trmB Pseudomonas putida BIRD-1 TrmB YP_005932650.1 5479006 R 931281 CDS YP_005932651.1 386014374 12523062 complement(5479738..5480550) 1 NC_017530.1 Thiazole synthase; protein ThiG 5480550 thiG 12523062 thiG Pseudomonas putida BIRD-1 protein ThiG YP_005932651.1 5479738 R 931281 CDS YP_005932652.1 386014375 12523063 complement(5480605..5480820) 1 NC_017530.1 Sulfur carrier protein ThiS 5480820 12523063 PPUBIRD1_4894 Pseudomonas putida BIRD-1 Sulfur carrier protein ThiS YP_005932652.1 5480605 R 931281 CDS YP_005932653.1 386014376 12523064 complement(5480908..5481279) 1 NC_017530.1 hypothetical protein 5481279 12523064 PPUBIRD1_4895 Pseudomonas putida BIRD-1 hypothetical protein YP_005932653.1 5480908 R 931281 CDS YP_005932654.1 386014377 12523065 5481344..5482054 1 NC_017530.1 Monofunctional biosynthetic peptidoglycan transglycosylase; protein MtgA 5482054 mtgA 12523065 mtgA Pseudomonas putida BIRD-1 protein MtgA YP_005932654.1 5481344 D 931281 CDS YP_005932655.1 386014378 12523066 complement(5482349..5483203) 1 NC_017530.1 RNA polymerase factor sigma-32; protein RpoH 5483203 rpoH 12523066 rpoH Pseudomonas putida BIRD-1 protein RpoH YP_005932655.1 5482349 R 931281 CDS YP_005932656.1 386014379 12523067 complement(5483315..5484340) 1 NC_017530.1 hypothetical protein 5484340 12523067 PPUBIRD1_4898 Pseudomonas putida BIRD-1 hypothetical protein YP_005932656.1 5483315 R 931281 CDS YP_005932657.1 386014380 12523068 complement(5484337..5485008) 1 NC_017530.1 cell division ATP-binding protein FtsE; protein FtsE 5485008 ftsE 12523068 ftsE Pseudomonas putida BIRD-1 protein FtsE YP_005932657.1 5484337 R 931281 CDS YP_005932658.1 386014381 12523069 complement(5485011..5486129) 1 NC_017530.1 Signal recognition particle-docking protein FtsY 5486129 12523069 PPUBIRD1_4900 Pseudomonas putida BIRD-1 Signal recognition particle-docking protein FtsY YP_005932658.1 5485011 R 931281 CDS YP_005932659.1 386014382 12523070 5486736..5488091 1 NC_017530.1 Peptidase M16 domain protein 5488091 12523070 PPUBIRD1_4902 Pseudomonas putida BIRD-1 Peptidase M16 domain protein YP_005932659.1 5486736 D 931281 CDS YP_005932660.1 386014383 12523071 5488084..5489574 1 NC_017530.1 Peptidase M16 domain protein 5489574 12523071 PPUBIRD1_4903 Pseudomonas putida BIRD-1 Peptidase M16 domain protein YP_005932660.1 5488084 D 931281 CDS YP_005932661.1 386014384 12523072 5489574..5490176 1 NC_017530.1 Putative methyltransferase 5490176 12523072 PPUBIRD1_4904 Pseudomonas putida BIRD-1 Putative methyltransferase YP_005932661.1 5489574 D 931281 CDS YP_005932662.1 386014385 12523073 5490271..5491572 1 NC_017530.1 Peptidase M16 domain-containing protein 5491572 12523073 PPUBIRD1_4905 Pseudomonas putida BIRD-1 Peptidase M16 domain-containing protein YP_005932662.1 5490271 D 931281 CDS YP_005932663.1 386014386 12523074 5491565..5492938 1 NC_017530.1 Peptidase M16 domain-containing protein 5492938 12523074 PPUBIRD1_4906 Pseudomonas putida BIRD-1 Peptidase M16 domain-containing protein YP_005932663.1 5491565 D 931281 CDS YP_005932664.1 386014387 12523075 5492999..5493991 1 NC_017530.1 Alpha/beta fold family hydrolase 5493991 12523075 PPUBIRD1_4907 Pseudomonas putida BIRD-1 Alpha/beta fold family hydrolase YP_005932664.1 5492999 D 931281 CDS YP_005932665.1 386014388 12523076 complement(5494004..5494858) 1 NC_017530.1 rhodanese domain-containing protein 5494858 12523076 PPUBIRD1_4908 Pseudomonas putida BIRD-1 rhodanese domain-containing protein YP_005932665.1 5494004 R 931281 CDS YP_005932666.1 386014389 12523077 complement(5494894..5495559) 1 NC_017530.1 TetR family transcriptional regulator 5495559 12523077 PPUBIRD1_4909 Pseudomonas putida BIRD-1 TetR family transcriptional regulator YP_005932666.1 5494894 R 931281 CDS YP_005932667.1 386014390 12523078 5495711..5497141 1 NC_017530.1 Aldehyde dehydrogenase 5497141 12523078 PPUBIRD1_4910 Pseudomonas putida BIRD-1 Aldehyde dehydrogenase YP_005932667.1 5495711 D 931281 CDS YP_005932668.1 386014391 12523079 5497152..5497637 1 NC_017530.1 hypothetical protein 5497637 12523079 PPUBIRD1_4911 Pseudomonas putida BIRD-1 hypothetical protein YP_005932668.1 5497152 D 931281 CDS YP_005932669.1 386014392 12523080 5497658..5499256 1 NC_017530.1 glucose-methanol-choline oxidoreductase 5499256 12523080 PPUBIRD1_4912 Pseudomonas putida BIRD-1 glucose-methanol-choline oxidoreductase YP_005932669.1 5497658 D 931281 CDS YP_005932670.1 386014393 12523081 5499369..5499854 1 NC_017530.1 Phosphopantetheine adenylyltransferase; CoaD protein 5499854 coaD 12523081 coaD Pseudomonas putida BIRD-1 CoaD protein YP_005932670.1 5499369 D 931281 CDS YP_005932671.1 386014394 12523082 5499956..5500207 1 NC_017530.1 Ferredoxin, 4Fe-4S 5500207 12523082 PPUBIRD1_4914 Pseudomonas putida BIRD-1 Ferredoxin, 4Fe-4S YP_005932671.1 5499956 D 931281 CDS YP_005932672.1 386014395 12523083 complement(5500369..5501181) 1 NC_017530.1 Formamidopyrimidine-DNA glycosylase; bifunctional; protein Mutprotein M 5501181 mutM 12523083 mutM Pseudomonas putida BIRD-1 protein Mutprotein M YP_005932672.1 5500369 R 931281 CDS YP_005932673.1 386014396 12523084 complement(5501185..5502057) 1 NC_017530.1 Putative signal transduction protein 5502057 12523084 PPUBIRD1_4916 Pseudomonas putida BIRD-1 Putative signal transduction protein YP_005932673.1 5501185 R 931281 CDS YP_005932674.1 386014397 12523085 5502179..5503375 1 NC_017530.1 hypothetical protein 5503375 12523085 PPUBIRD1_4917 Pseudomonas putida BIRD-1 hypothetical protein YP_005932674.1 5502179 D 931281 CDS YP_005932675.1 386014398 12523086 5503646..5505487 1 NC_017530.1 Dihydroxy-acid dehydratase; protein IlvD 5505487 ilvD 12523086 ilvD Pseudomonas putida BIRD-1 protein IlvD YP_005932675.1 5503646 D 931281 CDS YP_005932676.1 386014399 12523087 complement(5505726..5506781) 1 NC_017530.1 hypothetical protein 5506781 12523087 PPUBIRD1_4920 Pseudomonas putida BIRD-1 hypothetical protein YP_005932676.1 5505726 R 931281 CDS YP_005932677.1 386014400 12523088 5507026..5508417 1 NC_017530.1 Sodium:dicarboxylate symporter 5508417 12523088 PPUBIRD1_4921 Pseudomonas putida BIRD-1 Sodium:dicarboxylate symporter YP_005932677.1 5507026 D 931281 CDS YP_005932678.1 386014401 12523089 complement(5508617..5509132) 1 NC_017530.1 Dihydrofolate reductase 5509132 12523089 PPUBIRD1_4922 Pseudomonas putida BIRD-1 Dihydrofolate reductase YP_005932678.1 5508617 R 931281 CDS YP_005932679.1 386014402 12523090 5509199..5510578 1 NC_017530.1 hypothetical protein 5510578 12523090 PPUBIRD1_4923 Pseudomonas putida BIRD-1 hypothetical protein YP_005932679.1 5509199 D 931281 CDS YP_005932680.1 386014403 12523091 5510571..5511935 1 NC_017530.1 HSR1-like GTP-binding protein 5511935 12523091 PPUBIRD1_4924 Pseudomonas putida BIRD-1 HSR1-like GTP-binding protein YP_005932680.1 5510571 D 931281 CDS YP_005932681.1 386014404 12523092 complement(5512339..5513364) 1 NC_017530.1 ABC transporter substrate-binding protein 5513364 12523092 PPUBIRD1_4925 Pseudomonas putida BIRD-1 ABC transporter substrate-binding protein YP_005932681.1 5512339 R 931281 CDS YP_005932682.1 386014405 12523093 complement(5513383..5515107) 1 NC_017530.1 ABC transporter permease 5515107 12523093 PPUBIRD1_4926 Pseudomonas putida BIRD-1 ABC transporter permease YP_005932682.1 5513383 R 931281 CDS YP_005932683.1 386014406 12523094 complement(5515109..5516167) 1 NC_017530.1 ABC transporter ATP-binding protein 5516167 12523094 PPUBIRD1_4927 Pseudomonas putida BIRD-1 ABC transporter ATP-binding protein YP_005932683.1 5515109 R 931281 CDS YP_005932684.1 386014407 12523095 complement(5516399..5517268) 1 NC_017530.1 LysR family transcriptional regulator 5517268 12523095 PPUBIRD1_4928 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005932684.1 5516399 R 931281 CDS YP_005932685.1 386014408 12523096 complement(5517278..5519542) 1 NC_017530.1 heavy metal translocating P-type ATPase; CadA 5519542 cadA 12523096 cadA Pseudomonas putida BIRD-1 CadA YP_005932685.1 5517278 R 931281 CDS YP_005932686.1 386014409 12523097 5519626..5520120 1 NC_017530.1 MerR family transcriptional regulator 5520120 12523097 PPUBIRD1_4931 Pseudomonas putida BIRD-1 MerR family transcriptional regulator YP_005932686.1 5519626 D 931281 CDS YP_005932687.1 386014410 12523098 complement(5520187..5521158) 1 NC_017530.1 Thymidylate synthase; protein ThyA 5521158 thyA 12523098 thyA Pseudomonas putida BIRD-1 protein ThyA YP_005932687.1 5520187 R 931281 CDS YP_005932688.1 386014411 12523099 complement(5521210..5522016) 1 NC_017530.1 prolipoprotein diacylglyceryl transferase 5522016 12523099 PPUBIRD1_4933 Pseudomonas putida BIRD-1 prolipoprotein diacylglyceryl transferase YP_005932688.1 5521210 R 931281 CDS YP_005932689.1 386014412 12523100 complement(5522033..5522815) 1 NC_017530.1 hypothetical protein 5522815 12523100 PPUBIRD1_4934 Pseudomonas putida BIRD-1 hypothetical protein YP_005932689.1 5522033 R 931281 CDS YP_005932690.1 386014413 12523101 5522945..5523691 1 NC_017530.1 hypothetical protein 5523691 12523101 PPUBIRD1_4935 Pseudomonas putida BIRD-1 hypothetical protein YP_005932690.1 5522945 D 931281 CDS YP_005932691.1 386014414 12523102 complement(5523814..5526093) 1 NC_017530.1 PTSINtr with GAF domain, PtsP; PtsP 5526093 ptsP 12523102 ptsP Pseudomonas putida BIRD-1 PtsP YP_005932691.1 5523814 R 931281 CDS YP_005932692.1 386014415 12523103 complement(5526116..5526595) 1 NC_017530.1 RNA pyrophosphohydrolase; NudH 5526595 nudH 12523103 nudH Pseudomonas putida BIRD-1 NudH YP_005932692.1 5526116 R 931281 CDS YP_005932693.1 386014416 12523104 5526737..5527393 1 NC_017530.1 HAD family hydrolase 5527393 12523104 PPUBIRD1_4938 Pseudomonas putida BIRD-1 HAD family hydrolase YP_005932693.1 5526737 D 931281 CDS YP_005932694.1 386014417 12523105 complement(5527494..5527919) 1 NC_017530.1 hypothetical protein 5527919 12523105 PPUBIRD1_4939 Pseudomonas putida BIRD-1 hypothetical protein YP_005932694.1 5527494 R 931281 CDS YP_005932695.1 386014418 12523106 complement(5528067..5529581) 1 NC_017530.1 Threonine dehydratase 5529581 12523106 PPUBIRD1_4940 Pseudomonas putida BIRD-1 Threonine dehydratase YP_005932695.1 5528067 R 931281 CDS YP_005932696.1 386014419 12523107 5529715..5530389 1 NC_017530.1 Ribose-5-phosphate isomerase A; RpiA 5530389 rpiA 12523107 rpiA Pseudomonas putida BIRD-1 RpiA YP_005932696.1 5529715 D 931281 CDS YP_005932697.1 386014420 12523108 complement(5530490..5531392) 1 NC_017530.1 SdiA-regulated domain-containing protein 5531392 12523108 PPUBIRD1_4942 Pseudomonas putida BIRD-1 SdiA-regulated domain-containing protein YP_005932697.1 5530490 R 931281 CDS YP_005932698.1 386014421 12523109 complement(5531483..5532403) 1 NC_017530.1 SdiA-regulated domain-containing protein 5532403 12523109 PPUBIRD1_4943 Pseudomonas putida BIRD-1 SdiA-regulated domain-containing protein YP_005932698.1 5531483 R 931281 CDS YP_005932699.1 386014422 12523110 complement(5532585..5533250) 1 NC_017530.1 Fumarylacetoacetate (FAA) hydrolase 5533250 12523110 PPUBIRD1_4944 Pseudomonas putida BIRD-1 Fumarylacetoacetate (FAA) hydrolase YP_005932699.1 5532585 R 931281 CDS YP_005932700.1 386014423 12523111 complement(5533277..5534674) 1 NC_017530.1 FAD linked oxidase domain-containing protein 5534674 12523111 PPUBIRD1_4945 Pseudomonas putida BIRD-1 FAD linked oxidase domain-containing protein YP_005932700.1 5533277 R 931281 CDS YP_005932701.1 386014424 12523112 5534846..5536075 1 NC_017530.1 D-3-phosphoglycerate dehydrogenase; SerA 5536075 serA 12523112 serA Pseudomonas putida BIRD-1 SerA YP_005932701.1 5534846 D 931281 CDS YP_005932702.1 386014425 12523113 complement(5536122..5536598) 1 NC_017530.1 hypothetical protein 5536598 12523113 PPUBIRD1_4947 Pseudomonas putida BIRD-1 hypothetical protein YP_005932702.1 5536122 R 931281 CDS YP_005932703.1 386014426 12523114 5536822..5537307 1 NC_017530.1 hypothetical protein 5537307 12523114 PPUBIRD1_4948 Pseudomonas putida BIRD-1 hypothetical protein YP_005932703.1 5536822 D 931281 CDS YP_005932704.1 386014427 12523115 complement(5537422..5537895) 1 NC_017530.1 hypothetical protein 5537895 12523115 PPUBIRD1_4949 Pseudomonas putida BIRD-1 hypothetical protein YP_005932704.1 5537422 R 931281 CDS YP_005932705.1 386014428 12523116 complement(5537912..5538544) 1 NC_017530.1 2OG-Fe(II) oxygenase 5538544 12523116 PPUBIRD1_4950 Pseudomonas putida BIRD-1 2OG-Fe(II) oxygenase YP_005932705.1 5537912 R 931281 CDS YP_005932706.1 386014429 12523117 5538658..5539410 1 NC_017530.1 hypothetical protein 5539410 12523117 PPUBIRD1_4951 Pseudomonas putida BIRD-1 hypothetical protein YP_005932706.1 5538658 D 931281 CDS YP_005932707.1 386014430 12523118 complement(5539411..5540337) 1 NC_017530.1 Lysophospholipase-like protein 5540337 12523118 PPUBIRD1_4952 Pseudomonas putida BIRD-1 Lysophospholipase-like protein YP_005932707.1 5539411 R 931281 CDS YP_005932708.1 386014431 12523119 5540617..5541180 1 NC_017530.1 hypothetical protein 5541180 12523119 PPUBIRD1_4953 Pseudomonas putida BIRD-1 hypothetical protein YP_005932708.1 5540617 D 931281 CDS YP_005932709.1 386014432 12523120 5541266..5543050 1 NC_017530.1 pyocin S2; Pys2 5543050 pys2 12523120 pys2 Pseudomonas putida BIRD-1 Pys2 YP_005932709.1 5541266 D 931281 CDS YP_005932710.1 386014433 12523121 5543466..5543741 1 NC_017530.1 colicin/pyocin immunity family protein 5543741 12523121 PPUBIRD1_4955 Pseudomonas putida BIRD-1 colicin/pyocin immunity family protein YP_005932710.1 5543466 D 931281 CDS YP_005932711.1 386014434 12523122 complement(5543870..5544331) 1 NC_017530.1 Acetyltransferase 5544331 12523122 PPUBIRD1_4956 Pseudomonas putida BIRD-1 Acetyltransferase YP_005932711.1 5543870 R 931281 CDS YP_005932712.1 386014435 12523123 5544418..5546784 1 NC_017530.1 Peptidase S45, penicillin amidase 5546784 12523123 PPUBIRD1_4957 Pseudomonas putida BIRD-1 Peptidase S45, penicillin amidase YP_005932712.1 5544418 D 931281 CDS YP_005932713.1 386014436 12523124 complement(5546994..5547779) 1 NC_017530.1 NLPA lipoprotein 5547779 12523124 PPUBIRD1_4958 Pseudomonas putida BIRD-1 NLPA lipoprotein YP_005932713.1 5546994 R 931281 CDS YP_005932714.1 386014437 12523125 complement(5547955..5548785) 1 NC_017530.1 Sigma-54 dependent transcriptional regulator 5548785 12523125 PPUBIRD1_4959 Pseudomonas putida BIRD-1 Sigma-54 dependent transcriptional regulator YP_005932714.1 5547955 R 931281 CDS YP_005932715.1 386014438 12523126 complement(5548850..5549431) 1 NC_017530.1 hypothetical protein 5549431 12523126 PPUBIRD1_4960 Pseudomonas putida BIRD-1 hypothetical protein YP_005932715.1 5548850 R 931281 CDS YP_005932716.1 386014439 12523127 complement(5549642..5550631) 1 NC_017530.1 Sulfate/thiosulfate import ATP-binding protein cysA; protein CysA 5550631 cysA 12523127 cysA Pseudomonas putida BIRD-1 protein CysA YP_005932716.1 5549642 R 931281 CDS YP_005932717.1 386014440 12523128 complement(5550635..5551507) 1 NC_017530.1 sulfate ABC transporter, inner membrane subunit CysW; protein CysW 5551507 cysW 12523128 cysW Pseudomonas putida BIRD-1 protein CysW YP_005932717.1 5550635 R 931281 CDS YP_005932718.1 386014441 12523129 complement(5551519..5552337) 1 NC_017530.1 sulfate ABC transporter, inner membrane subunit CysT; protein CysT 5552337 cysT 12523129 cysT Pseudomonas putida BIRD-1 protein CysT YP_005932718.1 5551519 R 931281 CDS YP_005932719.1 386014442 12523130 complement(5552523..5553530) 1 NC_017530.1 sulfate ABC transporter substrate-binding protein 5553530 12523130 PPUBIRD1_4965 Pseudomonas putida BIRD-1 sulfate ABC transporter substrate-binding protein YP_005932719.1 5552523 R 931281 CDS YP_005932720.1 386014443 12523131 complement(5553582..5553764) 1 NC_017530.1 hypothetical protein 5553764 12523131 PPUBIRD1_4966 Pseudomonas putida BIRD-1 hypothetical protein YP_005932720.1 5553582 R 931281 CDS YP_005932721.1 386014444 12523132 complement(5554002..5557055) 1 NC_017530.1 Acriflavin resistance protein 5557055 12523132 PPUBIRD1_4967 Pseudomonas putida BIRD-1 Acriflavin resistance protein YP_005932721.1 5554002 R 931281 CDS YP_005932722.1 386014445 12523133 complement(5557052..5558119) 1 NC_017530.1 RND efflux transporter 5558119 12523133 PPUBIRD1_4968 Pseudomonas putida BIRD-1 RND efflux transporter YP_005932722.1 5557052 R 931281 CDS YP_005932723.1 386014446 12523134 complement(5558116..5559204) 1 NC_017530.1 Efflux transporter, RND family, MFP subunit 5559204 12523134 PPUBIRD1_4969 Pseudomonas putida BIRD-1 Efflux transporter, RND family, MFP subunit YP_005932723.1 5558116 R 931281 CDS YP_005932724.1 386014447 12523135 5560653..5561045 1 NC_017530.1 hypothetical protein 5561045 12523135 PPUBIRD1_4971 Pseudomonas putida BIRD-1 hypothetical protein YP_005932724.1 5560653 D 931281 CDS YP_005932725.1 386014448 12523136 complement(5561281..5562174) 1 NC_017530.1 ornithine carbamoyltransferase; PotI 5562174 potI 12523136 potI Pseudomonas putida BIRD-1 PotI YP_005932725.1 5561281 R 931281 CDS YP_005932726.1 386014449 12523137 complement(5562171..5563091) 1 NC_017530.1 binding-protein-dependent transport systems inner membrane component; PotH 5563091 potH 12523137 potH Pseudomonas putida BIRD-1 PotH YP_005932726.1 5562171 R 931281 CDS YP_005932727.1 386014450 12523138 complement(5563088..5564230) 1 NC_017530.1 spermidine/putrescine ABC transporter ATPase; PotG 5564230 potG 12523138 potG Pseudomonas putida BIRD-1 PotG YP_005932727.1 5563088 R 931281 CDS YP_005932728.1 386014451 12523139 complement(5564301..5565395) 1 NC_017530.1 putrescine ABC transporter, periplasmic putrescine-binding protein; PotF 5565395 potF 12523139 potF Pseudomonas putida BIRD-1 PotF YP_005932728.1 5564301 R 931281 CDS YP_005932729.1 386014452 12523140 complement(5565552..5566649) 1 NC_017530.1 putrescine ABC transporter, periplasmic putrescine-binding protein; PotF_2 5566649 potF_2 12523140 potF_2 Pseudomonas putida BIRD-1 PotF_2 YP_005932729.1 5565552 R 931281 CDS YP_005932730.1 386014453 12523141 complement(5566818..5568179) 1 NC_017530.1 Putative aminotransferase 5568179 12523141 PPUBIRD1_4977 Pseudomonas putida BIRD-1 Putative aminotransferase YP_005932730.1 5566818 R 931281 CDS YP_005932731.1 386014454 12523142 complement(5568228..5569586) 1 NC_017530.1 Glutamine synthetase, putative 5569586 12523142 PPUBIRD1_4978 Pseudomonas putida BIRD-1 Glutamine synthetase, putative YP_005932731.1 5568228 R 931281 CDS YP_005932732.1 386014455 12523143 5570161..5571537 1 NC_017530.1 Glutamine synthetase, putative 5571537 12523143 PPUBIRD1_4979 Pseudomonas putida BIRD-1 Glutamine synthetase, putative YP_005932732.1 5570161 D 931281 CDS YP_005932733.1 386014456 12523144 complement(5571690..5572988) 1 NC_017530.1 Amino-acid acetyltransferase; ArgA 5572988 argA 12523144 argA Pseudomonas putida BIRD-1 ArgA YP_005932733.1 5571690 R 931281 CDS YP_005932734.1 386014457 12523145 complement(5573113..5574255) 1 NC_017530.1 Acetylornithine deacetylase 5574255 12523145 PPUBIRD1_4981 Pseudomonas putida BIRD-1 Acetylornithine deacetylase YP_005932734.1 5573113 R 931281 CDS YP_005932735.1 386014458 12523146 5574372..5575739 1 NC_017530.1 adenylate cyclase 5575739 12523146 PPUBIRD1_4982 Pseudomonas putida BIRD-1 adenylate cyclase YP_005932735.1 5574372 D 931281 CDS YP_005932736.1 386014459 12523147 complement(5575870..5576340) 1 NC_017530.1 AsnC family transcriptional regulator 5576340 12523147 PPUBIRD1_4983 Pseudomonas putida BIRD-1 AsnC family transcriptional regulator YP_005932736.1 5575870 R 931281 CDS YP_005932737.1 386014460 12523148 5576467..5576772 1 NC_017530.1 hypothetical protein 5576772 12523148 PPUBIRD1_4984 Pseudomonas putida BIRD-1 hypothetical protein YP_005932737.1 5576467 D 931281 CDS YP_005932738.1 386014461 12523149 5576958..5578631 1 NC_017530.1 Type II secretion system protein E 5578631 12523149 PPUBIRD1_4985 Pseudomonas putida BIRD-1 Type II secretion system protein E YP_005932738.1 5576958 D 931281 CDS YP_005932739.1 386014462 12523150 5578663..5579034 1 NC_017530.1 hypothetical protein 5579034 12523150 PPUBIRD1_4986 Pseudomonas putida BIRD-1 hypothetical protein YP_005932739.1 5578663 D 931281 CDS YP_005932740.1 386014463 12523151 complement(5579099..5581972) 1 NC_017530.1 Glycine dehydrogenase [decarboxylating] 2; GcvP_2 5581972 gcvP_2 12523151 gcvP_2 Pseudomonas putida BIRD-1 GcvP_2 YP_005932740.1 5579099 R 931281 CDS YP_005932741.1 386014464 12523152 complement(5582169..5582552) 1 NC_017530.1 Glycine cleavage system H protein 2 5582552 12523152 PPUBIRD1_4988 Pseudomonas putida BIRD-1 Glycine cleavage system H protein 2 YP_005932741.1 5582169 R 931281 CDS YP_005932742.1 386014465 12523153 complement(5582604..5583686) 1 NC_017530.1 Aminomethyltransferase; GcvT_2 5583686 gcvT_2 12523153 gcvT_2 Pseudomonas putida BIRD-1 GcvT_2 YP_005932742.1 5582604 R 931281 CDS YP_005932743.1 386014466 12523154 complement(5583814..5585379) 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 5585379 12523154 PPUBIRD1_4990 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005932743.1 5583814 R 931281 CDS YP_005932744.1 386014467 12523155 complement(5585599..5586600) 1 NC_017530.1 Iron ABC transporter, periplasmic iron-binding protein, putative 5586600 12523155 PPUBIRD1_4991 Pseudomonas putida BIRD-1 Iron ABC transporter, periplasmic iron-binding protein, putative YP_005932744.1 5585599 R 931281 CDS YP_005932745.1 386014468 12523156 complement(5586716..5587939) 1 NC_017530.1 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; UbiF 5587939 ubiF 12523156 ubiF Pseudomonas putida BIRD-1 UbiF YP_005932745.1 5586716 R 931281 CDS YP_005932746.1 386014469 12523157 complement(5587943..5588425) 1 NC_017530.1 hypothetical protein 5588425 12523157 PPUBIRD1_4993 Pseudomonas putida BIRD-1 hypothetical protein YP_005932746.1 5587943 R 931281 CDS YP_005932747.1 386014470 12523158 complement(5588422..5589621) 1 NC_017530.1 2-octaprenyl-6-methoxyphenyl hydroxylase; UbiH 5589621 ubiH 12523158 ubiH Pseudomonas putida BIRD-1 UbiH YP_005932747.1 5588422 R 931281 CDS YP_005932748.1 386014471 12523159 complement(5589618..5590952) 1 NC_017530.1 Peptidase M24 5590952 12523159 PPUBIRD1_4995 Pseudomonas putida BIRD-1 Peptidase M24 YP_005932748.1 5589618 R 931281 CDS YP_005932749.1 386014472 12523160 complement(5590974..5591528) 1 NC_017530.1 hypothetical protein 5591528 12523160 PPUBIRD1_4996 Pseudomonas putida BIRD-1 hypothetical protein YP_005932749.1 5590974 R 931281 CDS YP_005932750.1 386014473 12523161 5591674..5591892 1 NC_017530.1 hypothetical protein 5591892 12523161 PPUBIRD1_4997 Pseudomonas putida BIRD-1 hypothetical protein YP_005932750.1 5591674 D 931281 CDS YP_005932751.1 386014474 12523162 5591889..5592209 1 NC_017530.1 hypothetical protein 5592209 12523162 PPUBIRD1_4998 Pseudomonas putida BIRD-1 hypothetical protein YP_005932751.1 5591889 D 931281 CDS YP_005932752.1 386014475 12523163 5592530..5593138 1 NC_017530.1 5-formyltetrahydrofolate cyclo-ligase 5593138 12523163 PPUBIRD1_4999 Pseudomonas putida BIRD-1 5-formyltetrahydrofolate cyclo-ligase YP_005932752.1 5592530 D 931281 CDS YP_005932753.1 386014476 12523164 complement(5593159..5593311) 1 NC_017530.1 hypothetical protein 5593311 12523164 PPUBIRD1_5000 Pseudomonas putida BIRD-1 hypothetical protein YP_005932753.1 5593159 R 931281 CDS YP_005932754.1 386014477 12523165 5593490..5593939 1 NC_017530.1 hypothetical protein 5593939 12523165 PPUBIRD1_5001 Pseudomonas putida BIRD-1 hypothetical protein YP_005932754.1 5593490 D 931281 CDS YP_005932755.1 386014478 12523166 5594035..5594994 1 NC_017530.1 Secretion protein HlyD family protein 5594994 12523166 PPUBIRD1_5002 Pseudomonas putida BIRD-1 Secretion protein HlyD family protein YP_005932755.1 5594035 D 931281 CDS YP_005932756.1 386014479 12523167 5594991..5597711 1 NC_017530.1 ABC transporter ATP-binding protein yhiH 5597711 12523167 PPUBIRD1_5003 Pseudomonas putida BIRD-1 ABC transporter ATP-binding protein yhiH YP_005932756.1 5594991 D 931281 CDS YP_005932757.1 386014480 12523168 5597713..5598825 1 NC_017530.1 ABC transporter 5598825 12523168 PPUBIRD1_5004 Pseudomonas putida BIRD-1 ABC transporter YP_005932757.1 5597713 D 931281 CDS YP_005932758.1 386014481 12523169 complement(5599309..5599713) 1 NC_017530.1 Flagellar basal body-associated protein FliL-like protein 5599713 12523169 PPUBIRD1_5005 Pseudomonas putida BIRD-1 Flagellar basal body-associated protein FliL-like protein YP_005932758.1 5599309 R 931281 CDS YP_005932759.1 386014482 12523170 5599871..5600848 1 NC_017530.1 Alcohol dehydrogenase 5600848 12523170 PPUBIRD1_5006 Pseudomonas putida BIRD-1 Alcohol dehydrogenase YP_005932759.1 5599871 D 931281 CDS YP_005932760.1 386014483 12523171 complement(5601014..5601664) 1 NC_017530.1 ChaC family protein 5601664 12523171 PPUBIRD1_5007 Pseudomonas putida BIRD-1 ChaC family protein YP_005932760.1 5601014 R 931281 CDS YP_005932761.1 386014484 12523172 complement(5601911..5602879) 1 NC_017530.1 CDP-6-deoxy-delta-3,4-glucoseen reductase 5602879 12523172 PPUBIRD1_5008 Pseudomonas putida BIRD-1 CDP-6-deoxy-delta-3,4-glucoseen reductase YP_005932761.1 5601911 R 931281 CDS YP_005932762.1 386014485 12523173 complement(5602879..5604345) 1 NC_017530.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 5604345 12523173 PPUBIRD1_5009 Pseudomonas putida BIRD-1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_005932762.1 5602879 R 931281 CDS YP_005932763.1 386014486 12523174 complement(5604553..5605812) 1 NC_017530.1 Transcription termination factor rho; hypothetical protein 5605812 rho 12523174 rho Pseudomonas putida BIRD-1 hypothetical protein YP_005932763.1 5604553 R 931281 CDS YP_005932764.1 386014487 12523175 complement(5606040..5606369) 1 NC_017530.1 thioredoxin; hypothetical protein 5606369 trx 12523175 trx Pseudomonas putida BIRD-1 hypothetical protein YP_005932764.1 5606040 R 931281 CDS YP_005932765.1 386014488 12523176 5606494..5608125 1 NC_017530.1 Exopolyphosphatase 5608125 12523176 PPUBIRD1_5012 Pseudomonas putida BIRD-1 Exopolyphosphatase YP_005932765.1 5606494 D 931281 CDS YP_005932766.1 386014489 12523177 complement(5608112..5610355) 1 NC_017530.1 polyphosphate kinase 5610355 12523177 PPUBIRD1_5013 Pseudomonas putida BIRD-1 polyphosphate kinase YP_005932766.1 5608112 R 931281 CDS YP_005932767.1 386014490 12523178 complement(5611046..5612341) 1 NC_017530.1 hypothetical protein 5612341 12523178 PPUBIRD1_5014 Pseudomonas putida BIRD-1 hypothetical protein YP_005932767.1 5611046 R 931281 CDS YP_005932768.1 386014491 12523179 5612448..5613113 1 NC_017530.1 isoprenoid biosynthesis protein; ElbB 5613113 elbB 12523179 elbB Pseudomonas putida BIRD-1 ElbB YP_005932768.1 5612448 D 931281 CDS YP_005932769.1 386014492 12523180 complement(5613318..5613770) 1 NC_017530.1 hypothetical protein 5613770 12523180 PPUBIRD1_5016 Pseudomonas putida BIRD-1 hypothetical protein YP_005932769.1 5613318 R 931281 CDS YP_005932770.1 386014493 12523181 5613937..5616792 1 NC_017530.1 adenylate cyclase; CyaA 5616792 cyaA 12523181 cyaA Pseudomonas putida BIRD-1 CyaA YP_005932770.1 5613937 D 931281 CDS YP_005932771.1 386014494 12523182 complement(5616861..5617271) 1 NC_017530.1 nucleoside diphosphate kinase regulator; Rnk 5617271 rnk 12523182 rnk Pseudomonas putida BIRD-1 Rnk YP_005932771.1 5616861 R 931281 CDS YP_005932772.1 386014495 12523183 complement(5617418..5617642) 1 NC_017530.1 hypothetical protein 5617642 12523183 PPUBIRD1_5019 Pseudomonas putida BIRD-1 hypothetical protein YP_005932772.1 5617418 R 931281 CDS YP_005932773.1 386014496 12523184 complement(5617644..5617976) 1 NC_017530.1 Protein cyaY; protein CyaY 5617976 cyaY 12523184 cyaY Pseudomonas putida BIRD-1 protein CyaY YP_005932773.1 5617644 R 931281 CDS YP_005932774.1 386014497 12523185 5618216..5618434 1 NC_017530.1 Lppl family lipoprotein 5618434 12523185 PPUBIRD1_5021 Pseudomonas putida BIRD-1 Lppl family lipoprotein YP_005932774.1 5618216 D 931281 CDS YP_005932775.1 386014498 12523186 5618444..5619691 1 NC_017530.1 Diaminopimelate decarboxylase; LysA_2 5619691 lysA_2 12523186 lysA_2 Pseudomonas putida BIRD-1 LysA_2 YP_005932775.1 5618444 D 931281 CDS YP_005932776.1 386014499 12523187 5619696..5620526 1 NC_017530.1 Diaminopimelate epimerase; protein DapF 5620526 dapF 12523187 dapF Pseudomonas putida BIRD-1 protein DapF YP_005932776.1 5619696 D 931281 CDS YP_005932777.1 386014500 12523188 5620540..5621250 1 NC_017530.1 hypothetical protein 5621250 12523188 PPUBIRD1_5024 Pseudomonas putida BIRD-1 hypothetical protein YP_005932777.1 5620540 D 931281 CDS YP_005932778.1 386014501 12523189 5621250..5622149 1 NC_017530.1 Tyrosine recombinase xerC; protein XerC 5622149 xerC 12523189 xerC Pseudomonas putida BIRD-1 protein XerC YP_005932778.1 5621250 D 931281 CDS YP_005932779.1 386014502 12523190 5622146..5622841 1 NC_017530.1 HAD family hydrolase 5622841 12523190 PPUBIRD1_5026 Pseudomonas putida BIRD-1 HAD family hydrolase YP_005932779.1 5622146 D 931281 CDS YP_005932780.1 386014503 12523191 complement(5623023..5623352) 1 NC_017530.1 hypothetical protein 5623352 12523191 PPUBIRD1_5027 Pseudomonas putida BIRD-1 hypothetical protein YP_005932780.1 5623023 R 931281 CDS YP_005932781.1 386014504 12523192 complement(5623782..5625065) 1 NC_017530.1 ammonium transporter; AmtB 5625065 amtB 12523192 amtB Pseudomonas putida BIRD-1 AmtB YP_005932781.1 5623782 R 931281 CDS YP_005932782.1 386014505 12523193 complement(5625161..5625499) 1 NC_017530.1 nitrogen regulatory protein P-II 2; GlnK 5625499 glnK 12523193 glnK Pseudomonas putida BIRD-1 GlnK YP_005932782.1 5625161 R 931281 CDS YP_005932783.1 386014506 12523194 5626036..5626302 1 NC_017530.1 hypothetical protein 5626302 12523194 PPUBIRD1_5030 Pseudomonas putida BIRD-1 hypothetical protein YP_005932783.1 5626036 D 931281 CDS YP_005932784.1 386014507 12523195 complement(5626610..5628685) 1 NC_017530.1 Sel1 domain-containing protein repeat-containing protein 5628685 12523195 PPUBIRD1_5032 Pseudomonas putida BIRD-1 Sel1 domain-containing protein repeat-containing protein YP_005932784.1 5626610 R 931281 CDS YP_005932785.1 386014508 12523196 5628861..5630432 1 NC_017530.1 Mg chelatase subunit ChlI 5630432 12523196 PPUBIRD1_5033 Pseudomonas putida BIRD-1 Mg chelatase subunit ChlI YP_005932785.1 5628861 D 931281 CDS YP_005932786.1 386014509 12523197 complement(5630496..5630852) 1 NC_017530.1 Response regulator receiver protein 5630852 12523197 PPUBIRD1_5034 Pseudomonas putida BIRD-1 Response regulator receiver protein YP_005932786.1 5630496 R 931281 CDS YP_005932787.1 386014510 12523198 complement(5630861..5631853) 1 NC_017530.1 LuxR family DNA-binding response regulator 5631853 12523198 PPUBIRD1_5035 Pseudomonas putida BIRD-1 LuxR family DNA-binding response regulator YP_005932787.1 5630861 R 931281 CDS YP_005932788.1 386014511 12523199 5632092..5637140 1 NC_017530.1 bifunctional; Sensor histidine kinase/GAF domain-containing protein 5637140 12523199 PPUBIRD1_5036 Pseudomonas putida BIRD-1 Sensor histidine kinase/GAF domain-containing protein YP_005932788.1 5632092 D 931281 CDS YP_005932789.1 386014512 12523200 complement(5637195..5637821) 1 NC_017530.1 Isochorismatase superfamily hydrolase 5637821 12523200 PPUBIRD1_5037 Pseudomonas putida BIRD-1 Isochorismatase superfamily hydrolase YP_005932789.1 5637195 R 931281 CDS YP_005932790.1 386014513 12523201 complement(5637894..5638256) 1 NC_017530.1 Helix-turn-helix domain-containing protein 5638256 12523201 PPUBIRD1_5038 Pseudomonas putida BIRD-1 Helix-turn-helix domain-containing protein YP_005932790.1 5637894 R 931281 CDS YP_005932791.1 386014514 12523202 5638437..5639423 1 NC_017530.1 AraC family transcriptional regulator 5639423 12523202 PPUBIRD1_5039 Pseudomonas putida BIRD-1 AraC family transcriptional regulator YP_005932791.1 5638437 D 931281 CDS YP_005932792.1 386014515 12523203 5639622..5641409 1 NC_017530.1 Potassium efflux system protein 5641409 12523203 PPUBIRD1_5040 Pseudomonas putida BIRD-1 Potassium efflux system protein YP_005932792.1 5639622 D 931281 CDS YP_005932793.1 386014516 12523204 5641877..5642203 1 NC_017530.1 hypothetical protein 5642203 12523204 PPUBIRD1_5041 Pseudomonas putida BIRD-1 hypothetical protein YP_005932793.1 5641877 D 931281 CDS YP_005932794.1 386014517 12523205 complement(5642552..5643181) 1 NC_017530.1 Isochorismatase superfamily hydrolase 5643181 12523205 PPUBIRD1_5042 Pseudomonas putida BIRD-1 Isochorismatase superfamily hydrolase YP_005932794.1 5642552 R 931281 CDS YP_005932795.1 386014518 12523206 5643412..5644323 1 NC_017530.1 LysR family transcriptional regulator 5644323 12523206 PPUBIRD1_5043 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005932795.1 5643412 D 931281 CDS YP_005932796.1 386014519 12523207 5644531..5645793 1 NC_017530.1 Porin, putative 5645793 12523207 PPUBIRD1_5044 Pseudomonas putida BIRD-1 Porin, putative YP_005932796.1 5644531 D 931281 CDS YP_005932797.1 386014520 12523208 5645795..5647393 1 NC_017530.1 Protein of unknown function DUF894, DitE; hypothetical protein 5647393 12523208 PPUBIRD1_5045 Pseudomonas putida BIRD-1 hypothetical protein YP_005932797.1 5645795 D 931281 CDS YP_005932798.1 386014521 12523209 complement(5647521..5649503) 1 NC_017530.1 amidohydrolase 5649503 12523209 PPUBIRD1_5046 Pseudomonas putida BIRD-1 amidohydrolase YP_005932798.1 5647521 R 931281 CDS YP_005932799.1 386014522 12523210 complement(5649703..5650521) 1 NC_017530.1 Arylesterase, putative 5650521 12523210 PPUBIRD1_5047 Pseudomonas putida BIRD-1 Arylesterase, putative YP_005932799.1 5649703 R 931281 CDS YP_005932800.1 386014523 12523211 complement(5650562..5650870) 1 NC_017530.1 hypothetical protein 5650870 12523211 PPUBIRD1_5048 Pseudomonas putida BIRD-1 hypothetical protein YP_005932800.1 5650562 R 931281 CDS YP_005932801.1 386014524 12523212 complement(5650988..5651617) 1 NC_017530.1 Isochorismatase superfamily hydrolase 5651617 12523212 PPUBIRD1_5049 Pseudomonas putida BIRD-1 Isochorismatase superfamily hydrolase YP_005932801.1 5650988 R 931281 CDS YP_005932802.1 386014525 12523213 5651939..5653366 1 NC_017530.1 Cyclic nucleotide-regulated small mechanosensitive ion channel 5653366 12523213 PPUBIRD1_5050 Pseudomonas putida BIRD-1 Cyclic nucleotide-regulated small mechanosensitive ion channel YP_005932802.1 5651939 D 931281 CDS YP_005932803.1 386014526 12523214 complement(5653475..5654776) 1 NC_017530.1 FAD dependent oxidoreductase 5654776 12523214 PPUBIRD1_5051 Pseudomonas putida BIRD-1 FAD dependent oxidoreductase YP_005932803.1 5653475 R 931281 CDS YP_005932804.1 386014527 12523215 complement(5654919..5656409) 1 NC_017530.1 Aldehyde dehydrogenase family protein 5656409 12523215 PPUBIRD1_5052 Pseudomonas putida BIRD-1 Aldehyde dehydrogenase family protein YP_005932804.1 5654919 R 931281 CDS YP_005932805.1 386014528 12523216 5656569..5657435 1 NC_017530.1 LysR family transcriptional regulator 5657435 12523216 PPUBIRD1_5053 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005932805.1 5656569 D 931281 CDS YP_005932806.1 386014529 12523217 5657639..5659033 1 NC_017530.1 hypothetical protein 5659033 12523217 PPUBIRD1_5054 Pseudomonas putida BIRD-1 hypothetical protein YP_005932806.1 5657639 D 931281 CDS YP_005932807.1 386014530 12523218 complement(5659132..5660058) 1 NC_017530.1 LysR family transcriptional regulator 5660058 12523218 PPUBIRD1_5055 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005932807.1 5659132 R 931281 CDS YP_005932808.1 386014531 12523219 5660216..5661604 1 NC_017530.1 multidrug resistance protein norM 5661604 12523219 PPUBIRD1_5056 Pseudomonas putida BIRD-1 multidrug resistance protein norM YP_005932808.1 5660216 D 931281 CDS YP_005932809.1 386014532 12523220 complement(5661787..5663454) 1 NC_017530.1 Diguanylate cyclase/phosphodiesterase 5663454 12523220 PPUBIRD1_5057 Pseudomonas putida BIRD-1 Diguanylate cyclase/phosphodiesterase YP_005932809.1 5661787 R 931281 CDS YP_005932810.1 386014533 12523221 5663750..5665759 1 NC_017530.1 ATP-dependent DNA helicase rep; hypothetical protein 5665759 rep 12523221 rep Pseudomonas putida BIRD-1 hypothetical protein YP_005932810.1 5663750 D 931281 CDS YP_005932811.1 386014534 12523222 5665871..5666443 1 NC_017530.1 Xanthine phosphoribosyltransferase; hypothetical protein 5666443 xpt 12523222 xpt Pseudomonas putida BIRD-1 hypothetical protein YP_005932811.1 5665871 D 931281 CDS YP_005932812.1 386014535 12523223 complement(5666553..5668412) 1 NC_017530.1 Acetyl-CoA hydrolase-like protein 5668412 12523223 PPUBIRD1_5060 Pseudomonas putida BIRD-1 Acetyl-CoA hydrolase-like protein YP_005932812.1 5666553 R 931281 CDS YP_005932813.1 386014536 12523224 complement(5668639..5669061) 1 NC_017530.1 Cytochrome c5 5669061 12523224 PPUBIRD1_5061 Pseudomonas putida BIRD-1 Cytochrome c5 YP_005932813.1 5668639 R 931281 CDS YP_005932814.1 386014537 12523225 complement(5669198..5669746) 1 NC_017530.1 Cro/CI family transcriptional regulator 5669746 12523225 PPUBIRD1_5062 Pseudomonas putida BIRD-1 Cro/CI family transcriptional regulator YP_005932814.1 5669198 R 931281 CDS YP_005932815.1 386014538 12523226 complement(5669854..5670927) 1 NC_017530.1 Alanine racemase; DadX 5670927 dadX 12523226 dadX Pseudomonas putida BIRD-1 DadX YP_005932815.1 5669854 R 931281 CDS YP_005932816.1 386014539 12523227 complement(5671055..5672359) 1 NC_017530.1 D-amino acid dehydrogenase 2 small subunit; DadA 5672359 dadA 12523227 dadA Pseudomonas putida BIRD-1 DadA YP_005932816.1 5671055 R 931281 CDS YP_005932817.1 386014540 12523228 5672516..5673004 1 NC_017530.1 leucine-responsive regulatory protein; Lrp 5673004 lrp 12523228 lrp Pseudomonas putida BIRD-1 Lrp YP_005932817.1 5672516 D 931281 CDS YP_005932818.1 386014541 12523229 complement(5673007..5673360) 1 NC_017530.1 hypothetical protein 5673360 12523229 PPUBIRD1_5066 Pseudomonas putida BIRD-1 hypothetical protein YP_005932818.1 5673007 R 931281 CDS YP_005932819.1 386014542 12523230 5673504..5674796 1 NC_017530.1 FAD dependent oxidoreductase 5674796 12523230 PPUBIRD1_5067 Pseudomonas putida BIRD-1 FAD dependent oxidoreductase YP_005932819.1 5673504 D 931281 CDS YP_005932820.1 386014543 12523231 complement(5674997..5675227) 1 NC_017530.1 hypothetical protein 5675227 12523231 PPUBIRD1_5068 Pseudomonas putida BIRD-1 hypothetical protein YP_005932820.1 5674997 R 931281 CDS YP_005932821.1 386014544 12523232 5675346..5676836 1 NC_017530.1 GntR family transcriptional regulator 5676836 12523232 PPUBIRD1_5069 Pseudomonas putida BIRD-1 GntR family transcriptional regulator YP_005932821.1 5675346 D 931281 CDS YP_005932822.1 386014545 12523233 5676897..5678450 1 NC_017530.1 Phospholipase D/transphosphatidylase 5678450 12523233 PPUBIRD1_5070 Pseudomonas putida BIRD-1 Phospholipase D/transphosphatidylase YP_005932822.1 5676897 D 931281 CDS YP_005932823.1 386014546 12523234 complement(5678485..5679624) 1 NC_017530.1 Major facilitator family transporter 5679624 12523234 PPUBIRD1_5071 Pseudomonas putida BIRD-1 Major facilitator family transporter YP_005932823.1 5678485 R 931281 CDS YP_005932824.1 386014547 12523235 complement(5679735..5681228) 1 NC_017530.1 Aldehyde dehydrogenase family protein 5681228 12523235 PPUBIRD1_5072 Pseudomonas putida BIRD-1 Aldehyde dehydrogenase family protein YP_005932824.1 5679735 R 931281 CDS YP_005932825.1 386014548 12523236 5681425..5681784 1 NC_017530.1 Protein of unknown function DUF861, cupin_3; hypothetical protein 5681784 12523236 PPUBIRD1_5073 Pseudomonas putida BIRD-1 hypothetical protein YP_005932825.1 5681425 D 931281 CDS YP_005932826.1 386014549 12523237 5681811..5682071 1 NC_017530.1 hypothetical protein 5682071 12523237 PPUBIRD1_5074 Pseudomonas putida BIRD-1 hypothetical protein YP_005932826.1 5681811 D 931281 CDS YP_005932827.1 386014550 12523238 complement(5682139..5682294) 1 NC_017530.1 50S ribosomal protein L33; protein RpmG 5682294 rpmG 12523238 rpmG Pseudomonas putida BIRD-1 protein RpmG YP_005932827.1 5682139 R 931281 CDS YP_005932828.1 386014551 12523239 complement(5682306..5682542) 1 NC_017530.1 50S ribosomal protein L28; RpmB 5682542 rpmB 12523239 rpmB Pseudomonas putida BIRD-1 RpmB YP_005932828.1 5682306 R 931281 CDS YP_005932829.1 386014552 12523240 5682904..5684493 1 NC_017530.1 Extracellular solute-binding protein 5684493 12523240 PPUBIRD1_5077 Pseudomonas putida BIRD-1 Extracellular solute-binding protein YP_005932829.1 5682904 D 931281 CDS YP_005932830.1 386014553 12523241 complement(5684627..5685154) 1 NC_017530.1 RadC 5685154 radC 12523241 radC Pseudomonas putida BIRD-1 RadC YP_005932830.1 5684627 R 931281 CDS YP_005932831.1 386014554 12523242 5685434..5686645 1 NC_017530.1 bifunctional; Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 5686645 12523242 PPUBIRD1_5079 Pseudomonas putida BIRD-1 Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_005932831.1 5685434 D 931281 CDS YP_005932832.1 386014555 12523243 5686651..5687106 1 NC_017530.1 Deoxyuridine 5'-triphosphate nucleotidohydrolase; hypothetical protein 5687106 dut 12523243 dut Pseudomonas putida BIRD-1 hypothetical protein YP_005932832.1 5686651 D 931281 CDS YP_005932833.1 386014556 12523244 complement(5687088..5687228) 1 NC_017530.1 hypothetical protein 5687228 12523244 PPUBIRD1_5081 Pseudomonas putida BIRD-1 hypothetical protein YP_005932833.1 5687088 R 931281 CDS YP_005932834.1 386014557 12523245 5687218..5688618 1 NC_017530.1 bifunctional; Phosphomannomutase/phosphoglucomutase 5688618 12523245 PPUBIRD1_5082 Pseudomonas putida BIRD-1 Phosphomannomutase/phosphoglucomutase YP_005932834.1 5687218 D 931281 CDS YP_005932835.1 386014558 12523246 5688649..5689554 1 NC_017530.1 Acetylglutamate kinase; protein ArgB 5689554 argB 12523246 argB Pseudomonas putida BIRD-1 protein ArgB YP_005932835.1 5688649 D 931281 CDS YP_005932836.1 386014559 12523247 complement(5689737..5690378) 1 NC_017530.1 Orotate phosphoribosyltransferase; protein PyrE 5690378 pyrE 12523247 pyrE Pseudomonas putida BIRD-1 protein PyrE YP_005932836.1 5689737 R 931281 CDS YP_005932837.1 386014560 12523248 5690447..5691238 1 NC_017530.1 exodeoxyribonuclease III Xth; Crc 5691238 crc 12523248 crc Pseudomonas putida BIRD-1 Crc YP_005932837.1 5690447 D 931281 CDS YP_005932838.1 386014561 12523249 complement(5691272..5691640) 1 NC_017530.1 hypothetical protein 5691640 12523249 PPUBIRD1_5086 Pseudomonas putida BIRD-1 hypothetical protein YP_005932838.1 5691272 R 931281 CDS YP_005932839.1 386014562 12523250 complement(5691664..5692386) 1 NC_017530.1 Ribonuclease PH; hypothetical protein 5692386 rph 12523250 rph Pseudomonas putida BIRD-1 hypothetical protein YP_005932839.1 5691664 R 931281 CDS YP_005932840.1 386014563 12523251 5692613..5693476 1 NC_017530.1 hypothetical protein 5693476 12523251 PPUBIRD1_5088 Pseudomonas putida BIRD-1 hypothetical protein YP_005932840.1 5692613 D 931281 CDS YP_005932841.1 386014564 12523252 5693490..5694110 1 NC_017530.1 Guanylate kinase; Gmk_2 5694110 gmk_2 12523252 gmk_2 Pseudomonas putida BIRD-1 Gmk_2 YP_005932841.1 5693490 D 931281 CDS YP_005932842.1 386014565 12523253 complement(5694241..5695782) 1 NC_017530.1 amino acid ABC transporter permease 5695782 12523253 PPUBIRD1_5090 Pseudomonas putida BIRD-1 amino acid ABC transporter permease YP_005932842.1 5694241 R 931281 CDS YP_005932843.1 386014566 12523254 complement(5695902..5696648) 1 NC_017530.1 Peptidase C26 5696648 12523254 PPUBIRD1_5091 Pseudomonas putida BIRD-1 Peptidase C26 YP_005932843.1 5695902 R 931281 CDS YP_005932844.1 386014567 12523255 complement(5696674..5698056) 1 NC_017530.1 Glutamate--putrescine ligase 5698056 12523255 PPUBIRD1_5092 Pseudomonas putida BIRD-1 Glutamate--putrescine ligase YP_005932844.1 5696674 R 931281 CDS YP_005932845.1 386014568 12523256 5698262..5699134 1 NC_017530.1 LysR family transcriptional regulator 5699134 12523256 PPUBIRD1_5093 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005932845.1 5698262 D 931281 CDS YP_005932846.1 386014569 12523257 5699375..5699638 1 NC_017530.1 DNA-directed RNA polymerase subunit omega; protein RpoZ 5699638 rpoZ 12523257 rpoZ Pseudomonas putida BIRD-1 protein RpoZ YP_005932846.1 5699375 D 931281 CDS YP_005932847.1 386014570 12523258 5699698..5701806 1 NC_017530.1 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; SpoT 5701806 spoT 12523258 spoT Pseudomonas putida BIRD-1 SpoT YP_005932847.1 5699698 D 931281 CDS YP_005932848.1 386014571 12523259 5701830..5702210 1 NC_017530.1 Endoribonuclease 5702210 12523259 PPUBIRD1_5096 Pseudomonas putida BIRD-1 Endoribonuclease YP_005932848.1 5701830 D 931281 CDS YP_005932849.1 386014572 12523260 5702267..5702998 1 NC_017530.1 hypothetical protein 5702998 12523260 PPUBIRD1_5097 Pseudomonas putida BIRD-1 hypothetical protein YP_005932849.1 5702267 D 931281 CDS YP_005932850.1 386014573 12523261 complement(5703168..5704025) 1 NC_017530.1 NAD-dependent epimerase/dehydratase 5704025 12523261 PPUBIRD1_5098 Pseudomonas putida BIRD-1 NAD-dependent epimerase/dehydratase YP_005932850.1 5703168 R 931281 CDS YP_005932851.1 386014574 12523262 5704216..5705190 1 NC_017530.1 TonB-system energizer ExbB type-1 5705190 12523262 PPUBIRD1_5099 Pseudomonas putida BIRD-1 TonB-system energizer ExbB type-1 YP_005932851.1 5704216 D 931281 CDS YP_005932852.1 386014575 12523263 5705194..5705622 1 NC_017530.1 biopolymer transport protein ExbD; ExbD protein 5705622 exbD 12523263 exbD Pseudomonas putida BIRD-1 ExbD protein YP_005932852.1 5705194 D 931281 CDS YP_005932853.1 386014576 12523264 5705640..5706350 1 NC_017530.1 TonB family protein; TonB 5706350 tonB 12523264 tonB Pseudomonas putida BIRD-1 TonB YP_005932853.1 5705640 D 931281 CDS YP_005932854.1 386014577 12523265 5706445..5707371 1 NC_017530.1 LysR family transcriptional regulator 5707371 12523265 PPUBIRD1_5102 Pseudomonas putida BIRD-1 LysR family transcriptional regulator YP_005932854.1 5706445 D 931281 CDS YP_005932855.1 386014578 12523266 5707375..5709453 1 NC_017530.1 ATP-dependent DNA helicase recG; protein RecG 5709453 recG 12523266 recG Pseudomonas putida BIRD-1 protein RecG YP_005932855.1 5707375 D 931281 CDS YP_005932856.1 386014579 12523267 5709531..5710934 1 NC_017530.1 Putative signal transduction protein 5710934 12523267 PPUBIRD1_5104 Pseudomonas putida BIRD-1 Putative signal transduction protein YP_005932856.1 5709531 D 931281 CDS YP_005932857.1 386014580 12523268 complement(5711064..5711438) 1 NC_017530.1 hypothetical protein 5711438 12523268 PPUBIRD1_5105 Pseudomonas putida BIRD-1 hypothetical protein YP_005932857.1 5711064 R 931281 CDS YP_005932858.1 386014581 12523269 complement(5711587..5711886) 1 NC_017530.1 histone family protein DNA-binding protein; HupA protein 5711886 hupA 12523269 hupA Pseudomonas putida BIRD-1 HupA protein YP_005932858.1 5711587 R 931281 CDS YP_005932859.1 386014582 12523270 complement(5712074..5713222) 1 NC_017530.1 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; RubB 5713222 rubB 12523270 rubB Pseudomonas putida BIRD-1 RubB YP_005932859.1 5712074 R 931281 CDS YP_005932860.1 386014583 12523271 complement(5713239..5713406) 1 NC_017530.1 rubredoxin reductase; RubB_2 5713406 rubB_2 12523271 rubB_2 Pseudomonas putida BIRD-1 RubB_2 YP_005932860.1 5713239 R 931281 CDS YP_005932861.1 386014584 12523272 5713631..5714188 1 NC_017530.1 chorismate--pyruvate lyase 5714188 12523272 PPUBIRD1_5109 Pseudomonas putida BIRD-1 chorismate--pyruvate lyase YP_005932861.1 5713631 D 931281 CDS YP_005932862.1 386014585 12523273 5714188..5715078 1 NC_017530.1 4-hydroxybenzoate octaprenyltransferase; protein UbiA 5715078 ubiA 12523273 ubiA Pseudomonas putida BIRD-1 protein UbiA YP_005932862.1 5714188 D 931281 CDS YP_005932863.1 386014586 12523274 complement(5715112..5715459) 1 NC_017530.1 hypothetical protein 5715459 12523274 PPUBIRD1_5111 Pseudomonas putida BIRD-1 hypothetical protein YP_005932863.1 5715112 R 931281 CDS YP_005932864.1 386014587 12523275 5715657..5716346 1 NC_017530.1 winged helix family two component transcriptional regulator; protein PhoB 5716346 phoB 12523275 phoB Pseudomonas putida BIRD-1 protein PhoB YP_005932864.1 5715657 D 931281 CDS YP_005932865.1 386014588 12523276 5716395..5717702 1 NC_017530.1 Phosphate regulon sensor protein phoR 5717702 12523276 PPUBIRD1_5113 Pseudomonas putida BIRD-1 Phosphate regulon sensor protein phoR YP_005932865.1 5716395 D 931281 CDS YP_005932866.1 386014589 12523277 5717876..5719216 1 NC_017530.1 hypothetical protein 5719216 12523277 PPUBIRD1_5114 Pseudomonas putida BIRD-1 hypothetical protein YP_005932866.1 5717876 D 931281 CDS YP_005932867.1 386014590 12523278 complement(5719229..5720125) 1 NC_017530.1 M24/M37 family peptidase 5720125 12523278 PPUBIRD1_5115 Pseudomonas putida BIRD-1 M24/M37 family peptidase YP_005932867.1 5719229 R 931281 CDS YP_005932868.1 386014591 12523279 complement(5720272..5721162) 1 NC_017530.1 Response regulator receiver protein 5721162 12523279 PPUBIRD1_5116 Pseudomonas putida BIRD-1 Response regulator receiver protein YP_005932868.1 5720272 R 931281 CDS YP_005932869.1 386014592 12523280 complement(5721326..5722096) 1 NC_017530.1 phosphate transporter PhoU; PhoU protein 5722096 phoU 12523280 phoU Pseudomonas putida BIRD-1 PhoU protein YP_005932869.1 5721326 R 931281 CDS YP_005932870.1 386014593 12523281 complement(5722198..5723031) 1 NC_017530.1 Phosphate import ATP-binding protein pstB 2; PstB protein 5723031 pstB 12523281 pstB Pseudomonas putida BIRD-1 PstB protein YP_005932870.1 5722198 R 931281 CDS YP_005932871.1 386014594 12523282 complement(5723104..5724774) 1 NC_017530.1 phosphate ABC transporter inner membrane protein; PstA 5724774 pstA 12523282 pstA Pseudomonas putida BIRD-1 PstA YP_005932871.1 5723104 R 931281 CDS YP_005932872.1 386014595 12523283 complement(5724792..5727080) 1 NC_017530.1 binding-protein-dependent transport system inner membrane protein 5727080 12523283 PPUBIRD1_5120 Pseudomonas putida BIRD-1 binding-protein-dependent transport system inner membrane protein YP_005932872.1 5724792 R 931281 CDS YP_005932873.1 386014596 12523284 complement(5727215..5728216) 1 NC_017530.1 Phosphate binding protein 5728216 12523284 PPUBIRD1_5121 Pseudomonas putida BIRD-1 Phosphate binding protein YP_005932873.1 5727215 R 931281 CDS YP_005932874.1 386014597 12523285 complement(5728454..5729743) 1 NC_017530.1 Major facilitator family transporter 5729743 12523285 PPUBIRD1_5122 Pseudomonas putida BIRD-1 Major facilitator family transporter YP_005932874.1 5728454 R 931281 CDS YP_005932875.1 386014598 12523286 5730106..5730504 1 NC_017530.1 Thioesterase superfamily protein 5730504 12523286 PPUBIRD1_5123 Pseudomonas putida BIRD-1 Thioesterase superfamily protein YP_005932875.1 5730106 D 931281 CDS YP_005932876.1 386014599 12523287 5730576..5731472 1 NC_017530.1 aldose 1-epimerase 5731472 12523287 PPUBIRD1_5124 Pseudomonas putida BIRD-1 aldose 1-epimerase YP_005932876.1 5730576 D 931281 CDS