-- dump date 20140620_003218 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 342610000001 SEQ_END SEQ_END NC_008228.1 5187005 5187005 DR NC_008228.1; contig end 5187005..5187005 Pseudoalteromonas atlantica T6c YP_659588.1 CDS Patl_0001 NC_008228.1 96 1520 D KEGG: vpa:VP0011 chromosomal DNA replication initiator DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator, DnaA-like Chromosomal replication initiator, DnaA; SMART: ATPase; chromosomal replication initiator protein DnaA 96..1520 Pseudoalteromonas atlantica T6c 4171826 YP_659589.1 CDS Patl_0002 NC_008228.1 1541 2644 D KEGG: ilo:IL0002 DNA polymerase sliding clamp subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; DNA polymerase III subunit beta 1541..2644 Pseudoalteromonas atlantica T6c 4171827 YP_659590.1 CDS Patl_0003 NC_008228.1 2667 3758 D TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC protein-like; KEGG: vpa:VP0013 RecF protein; DNA replication and repair protein RecF 2667..3758 Pseudoalteromonas atlantica T6c 4171828 YP_659591.1 CDS Patl_0004 NC_008228.1 3763 6183 D KEGG: ppr:PBPRA0011 putative DNA gyrase, subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B-like ATP-binding region, ATPase-like TOPRIM domain containing protein DNA topoisomerase, type IIA, subunit B, region 2; SMART: DNA topoisomerase, type IIA, subunit B or-like; DNA gyrase subunit B 3763..6183 Pseudoalteromonas atlantica T6c 4171829 YP_659592.1 CDS Patl_0005 NC_008228.1 6298 6996 D TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: dps:DP1920 hypothetical protein; aspartate racemase 6298..6996 Pseudoalteromonas atlantica T6c 4171830 YP_659593.1 CDS Patl_0006 NC_008228.1 7111 8718 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein histidine kinase, HAMP region; KEGG: tdn:Tmden_2088 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); diguanylate cyclase complement(7111..8718) Pseudoalteromonas atlantica T6c 4171831 YP_659594.1 CDS Patl_0007 NC_008228.1 8792 9232 R KEGG: hch:HCH_00343 hypothetical protein; hypothetical protein complement(8792..9232) Pseudoalteromonas atlantica T6c 4171832 YP_659595.1 CDS glyS NC_008228.1 9269 11347 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(9269..11347) Pseudoalteromonas atlantica T6c 4171833 YP_659596.1 CDS glyQ NC_008228.1 11351 12256 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(11351..12256) Pseudoalteromonas atlantica T6c 4171834 YP_659597.1 CDS Patl_0010 NC_008228.1 12372 12944 D KEGG: son:SO0016 DNA-3-methyladenine glycosidase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 12372..12944 Pseudoalteromonas atlantica T6c 4171835 YP_659598.1 CDS Patl_0011 NC_008228.1 12966 13415 R KEGG: pha:PSHAa2750 hypothetical protein; hypothetical protein complement(12966..13415) Pseudoalteromonas atlantica T6c 4171836 YP_659599.1 CDS Patl_0012 NC_008228.1 13424 13951 R PFAM: protein of unknown function DUF414; KEGG: pha:PSHAa2751 hypothetical protein; hypothetical protein complement(13424..13951) Pseudoalteromonas atlantica T6c 4171837 YP_659600.1 CDS Patl_0013 NC_008228.1 14429 15118 R PFAM: cytochrome c, class I; KEGG: vfi:VF0076 cytochrome c4; cytochrome c, class I complement(14429..15118) Pseudoalteromonas atlantica T6c 4171838 YP_659601.1 CDS engB NC_008228.1 15261 15881 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 15261..15881 Pseudoalteromonas atlantica T6c 4171839 YP_659602.1 CDS Patl_0015 NC_008228.1 16229 19015 R KEGG: vfi:VF0074 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase 5'-3' exonuclease 3'-5' exonuclease; SMART: Helix-hairpin-helix motif, class 2; DNA polymerase I complement(16229..19015) Pseudoalteromonas atlantica T6c 4171840 YP_659603.1 CDS Patl_0016 NC_008228.1 19825 21276 D TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: cps:CPS_0015 Trk system potassium uptake protein TrkH; TrkH family potassium uptake protein 19825..21276 Pseudoalteromonas atlantica T6c 4171841 YP_659604.1 CDS Patl_0017 NC_008228.1 21516 22262 R PFAM: TraT complement resistance; KEGG: pha:PSHAa0591 complement resistance protein precursor; TraT complement resistance complement(21516..22262) Pseudoalteromonas atlantica T6c 4171842 YP_659605.1 CDS Patl_0018 NC_008228.1 22303 22662 R KEGG: pha:PSHAa0592 hypothetical protein; hypothetical protein complement(22303..22662) Pseudoalteromonas atlantica T6c 4171843 YP_659606.1 CDS Patl_0019 NC_008228.1 22918 23454 R KEGG: son:SO4561 hypothetical protein; hypothetical protein complement(22918..23454) Pseudoalteromonas atlantica T6c 4171844 YP_659607.1 CDS trkA NC_008228.1 23559 24938 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein complement(23559..24938) Pseudoalteromonas atlantica T6c 4173565 YP_659608.1 CDS Patl_0021 NC_008228.1 24986 26299 R TIGRFAM: sun protein; PFAM: Fmu (Sun) NusB/RsmB/TIM44; KEGG: vfi:VF2545 16S rRNA m(5)C 967 methyltransferase; sun protein complement(24986..26299) Pseudoalteromonas atlantica T6c 4173566 YP_659609.1 CDS Patl_0022 NC_008228.1 26296 27243 R TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase-like; KEGG: son:SO0031 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(26296..27243) Pseudoalteromonas atlantica T6c 4173567 YP_659610.1 CDS def NC_008228.1 27253 27762 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(27253..27762) Pseudoalteromonas atlantica T6c 4173568 YP_659611.1 CDS Patl_0024 NC_008228.1 28001 29080 D PFAM: Peptidoglycan-binding LysM; KEGG: pha:PSHAa0024 hypothetical protein; peptidoglycan-binding LysM 28001..29080 Pseudoalteromonas atlantica T6c 4173569 YP_659612.1 CDS Patl_0025 NC_008228.1 29105 30244 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF protein; KEGG: ppr:PBPRA3577 hypothetical Smf protein; DNA protecting protein DprA 29105..30244 Pseudoalteromonas atlantica T6c 4173570 YP_659613.1 CDS Patl_0026 NC_008228.1 30246 30722 D PFAM: protein of unknown function DUF494; KEGG: cps:CPS_0023 smg protein; hypothetical protein 30246..30722 Pseudoalteromonas atlantica T6c 4173571 YP_659614.1 CDS Patl_0027 NC_008228.1 30779 31339 D PFAM: DNA topoisomerase, type IA, zn finger; KEGG: vch:VC0050 DNA topoisomerase I-related protein; DNA topoisomerase, type IA, Zn finger 30779..31339 Pseudoalteromonas atlantica T6c 4173572 YP_659615.1 CDS Patl_0028 NC_008228.1 31408 31971 D PFAM: SUA5/yciO/yrdC-like; KEGG: eca:ECA3996 putative DNA topoisomerase; SUA5/yciO/yrdC-like protein 31408..31971 Pseudoalteromonas atlantica T6c 4173573 YP_659616.1 CDS Patl_0029 NC_008228.1 31975 32898 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 31975..32898 Pseudoalteromonas atlantica T6c 4173574 YP_659617.1 CDS Patl_0030 NC_008228.1 33101 33784 D PFAM: OmpW; KEGG: cps:CPS_0029 outer membrane protein, OmpW family; OmpW protein 33101..33784 Pseudoalteromonas atlantica T6c 4173575 YP_659618.1 CDS Patl_0031 NC_008228.1 33931 34749 D KEGG: vfi:VF2535 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase Shikimate dehydrogenase substrate binding-like; shikimate 5-dehydrogenase 33931..34749 Pseudoalteromonas atlantica T6c 4173576 YP_659619.1 CDS Patl_0032 NC_008228.1 34746 34988 D hypothetical protein 34746..34988 Pseudoalteromonas atlantica T6c 4173577 YP_659620.1 CDS Patl_0033 NC_008228.1 35035 35568 R KEGG: pha:PSHAa0033 carbonic anhydrase/acetyltransferase; carbonic anhydrase/acetyltransferase complement(35035..35568) Pseudoalteromonas atlantica T6c 4173578 YP_659621.1 CDS Patl_0035 NC_008228.1 45151 46605 R KEGG: vpa:VP2035 hypothetical protein; hypothetical protein complement(45151..46605) Pseudoalteromonas atlantica T6c 4172880 YP_659622.1 CDS Patl_0036 NC_008228.1 46615 47304 R KEGG: vvy:VV1296 hypothetical protein; hypothetical protein complement(46615..47304) Pseudoalteromonas atlantica T6c 4172881 YP_659623.1 CDS Patl_0037 NC_008228.1 47478 47951 D PFAM: protein of unknown function DUF55; KEGG: vpa:VP2976 hypothetical protein; hypothetical protein 47478..47951 Pseudoalteromonas atlantica T6c 4172882 YP_659624.1 CDS Patl_0038 NC_008228.1 47969 48841 R hypothetical protein complement(47969..48841) Pseudoalteromonas atlantica T6c 4172883 YP_659625.1 CDS Patl_0039 NC_008228.1 48863 49564 R hypothetical protein complement(48863..49564) Pseudoalteromonas atlantica T6c 4172884 YP_659626.1 CDS Patl_0040 NC_008228.1 49808 51577 R PFAM: protein of unknown function DUF885; KEGG: son:SO4732 hypothetical protein; hypothetical protein complement(49808..51577) Pseudoalteromonas atlantica T6c 4172885 YP_659627.1 CDS Patl_0041 NC_008228.1 51625 51948 R KEGG: eca:ECA4350 hypothetical protein; hypothetical protein complement(51625..51948) Pseudoalteromonas atlantica T6c 4172886 YP_659628.1 CDS Patl_0042 NC_008228.1 52248 53906 D PFAM: peptidase M28; KEGG: ilo:IL1029 probable aminopeptidase; peptidase M28 52248..53906 Pseudoalteromonas atlantica T6c 4172887 YP_659629.1 CDS Patl_0043 NC_008228.1 54077 55933 D PFAM: protein of unknown function DUF885; KEGG: ilo:IL2415 hypothetical protein; hypothetical protein 54077..55933 Pseudoalteromonas atlantica T6c 4172888 YP_659630.1 CDS slmA NC_008228.1 56015 56608 R FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein complement(56015..56608) Pseudoalteromonas atlantica T6c 4172889 YP_659631.1 CDS Patl_0045 NC_008228.1 56671 57924 R KEGG: son:SO4249 DNA/pantothenate metabolism flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein DNA/pantothenate metabolism flavoprotein-like; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase complement(56671..57924) Pseudoalteromonas atlantica T6c 4172890 YP_659632.1 CDS Patl_0046 NC_008228.1 58059 58733 D PFAM: DNA repair protein RadC; KEGG: noc:Noc_0236 DNA repair protein RadC; DNA repair protein RadC 58059..58733 Pseudoalteromonas atlantica T6c 4172891 YP_659633.1 CDS Patl_0047 NC_008228.1 58861 59673 D PFAM: glycosyl transferase, family 2; KEGG: bth:BT3365 putative glycosyltransferase; glycosyl transferase family protein 58861..59673 Pseudoalteromonas atlantica T6c 4172892 YP_659634.1 CDS Patl_0048 NC_008228.1 59813 60049 D PFAM: ribosomal protein L28; KEGG: msu:MS1942 ribosomal protein L28; 50S ribosomal protein L28 59813..60049 Pseudoalteromonas atlantica T6c 4172893 YP_659635.1 CDS rpmG NC_008228.1 60062 60217 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 60062..60217 Pseudoalteromonas atlantica T6c 4171883 YP_659636.1 CDS Patl_0050 NC_008228.1 60368 60898 D hypothetical protein 60368..60898 Pseudoalteromonas atlantica T6c 4171884 YP_659637.1 CDS Patl_0051 NC_008228.1 60939 61751 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 60939..61751 Pseudoalteromonas atlantica T6c 4171885 YP_659638.1 CDS Patl_0052 NC_008228.1 61839 62912 R PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: son:SO4680 hypothetical protein; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase complement(61839..62912) Pseudoalteromonas atlantica T6c 4171886 YP_659639.1 CDS coaD NC_008228.1 63017 63499 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(63017..63499) Pseudoalteromonas atlantica T6c 4171887 YP_659640.1 CDS Patl_0054 NC_008228.1 63548 64951 R KEGG: cps:CPS_4204 hypothetical protein; hypothetical protein complement(63548..64951) Pseudoalteromonas atlantica T6c 4171888 YP_659641.1 CDS Patl_0055 NC_008228.1 65078 65797 R catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase complement(65078..65797) Pseudoalteromonas atlantica T6c 4171889 YP_659642.1 CDS Patl_0056 NC_008228.1 65951 67027 D PFAM: glycosyl transferase, group 1; KEGG: cps:CPS_4182 putative lipopolysaccharide core biosynthesis mannosyltransferase; group 1 glycosyl transferase 65951..67027 Pseudoalteromonas atlantica T6c 4171890 YP_659643.1 CDS Patl_0057 NC_008228.1 67034 68350 R PFAM: glycosyl transferase, group 1 Three-deoxy-D-manno-octulosonic-acid transferase-like; KEGG: pfl:PFL_0536 3-deoxy-D-manno-octulosonic-acid transferase; three-deoxy-D-manno-octulosonic-acid transferase-like protein complement(67034..68350) Pseudoalteromonas atlantica T6c 4171891 YP_659644.1 CDS Patl_0058 NC_008228.1 68610 69029 D KEGG: noc:Noc_1149 hypothetical protein; hypothetical protein 68610..69029 Pseudoalteromonas atlantica T6c 4171892 YP_659645.1 CDS Patl_0059 NC_008228.1 69031 70212 D KEGG: cps:CPS_0951 hypothetical protein; hypothetical protein 69031..70212 Pseudoalteromonas atlantica T6c 4171893 YP_659646.1 CDS Patl_0060 NC_008228.1 70215 72662 D TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: cps:CPS_0952 GGDEF/EAL domain protein; diguanylate cyclase/phosphodiesterase 70215..72662 Pseudoalteromonas atlantica T6c 4171894 YP_659647.1 CDS Patl_0061 NC_008228.1 72809 74005 D catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 72809..74005 Pseudoalteromonas atlantica T6c 4171895 YP_659648.1 CDS tdh NC_008228.1 74002 75024 D converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 74002..75024 Pseudoalteromonas atlantica T6c 4171896 YP_659649.1 CDS Patl_0063 NC_008228.1 75040 75360 D PFAM: Rhodanese-like; KEGG: vvy:VV0117 rhodanese-related sulfurtransferase; thiosulfate sulfurtransferase 75040..75360 Pseudoalteromonas atlantica T6c 4171897 YP_659650.1 CDS Patl_0064 NC_008228.1 75364 76242 D PFAM: Rhomboid-like protein; KEGG: cps:CPS_0123 putative GlpG protein; rhomboid-like protein 75364..76242 Pseudoalteromonas atlantica T6c 4171898 YP_659651.1 CDS Patl_0065 NC_008228.1 76249 76662 R PFAM: flagellar basal body-associated protein FliL; KEGG: pha:PSHAa2312 flagellar basal body-associated protein; flagellar basal body-associated protein FliL-like protein complement(76249..76662) Pseudoalteromonas atlantica T6c 4171899 YP_659652.1 CDS Patl_0066 NC_008228.1 76790 77368 D PFAM: Chorismate lyase; KEGG: son:SO0131 putative chorismate--pyruvate lyase; chorismate lyase 76790..77368 Pseudoalteromonas atlantica T6c 4171900 YP_659653.1 CDS Patl_0067 NC_008228.1 77409 78230 D TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: sdy:SDY_4534 4-hydroxybenzoate-octaprenyltransferase; 4-hydroxybenzoate polyprenyltransferase 77409..78230 Pseudoalteromonas atlantica T6c 4171901 YP_659654.1 CDS Patl_0068 NC_008228.1 78268 80214 D PFAM: histidine kinase, HAMP region chemotaxis sensory transducer; KEGG: hch:HCH_01925 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 78268..80214 Pseudoalteromonas atlantica T6c 4171768 YP_659655.1 CDS Patl_0069 NC_008228.1 80220 80471 R PFAM: protein of unknown function DUF526; KEGG: pha:PSHAa2763 hypothetical protein; hypothetical protein complement(80220..80471) Pseudoalteromonas atlantica T6c 4171769 YP_659656.1 CDS Patl_0070 NC_008228.1 80654 82669 D TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: ppr:PBPRA0091 putative ATP-dependent DNA helicase Rep; ATP-dependent DNA helicase Rep 80654..82669 Pseudoalteromonas atlantica T6c 4171770 YP_659657.1 CDS Patl_0071 NC_008228.1 82673 85264 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL GAF; KEGG: ilo:IL0206 intracellular signaling protein (GAF,GGDEF,EAL domains); GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(82673..85264) Pseudoalteromonas atlantica T6c 4171771 YP_659658.1 CDS Patl_0072 NC_008228.1 85401 85811 R PFAM: cytochrome c, class I; KEGG: vvy:VV0041 cytochrome c5; cytochrome c, class I complement(85401..85811) Pseudoalteromonas atlantica T6c 4171772 YP_659659.1 CDS Patl_0073 NC_008228.1 85909 86748 R catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase complement(85909..86748) Pseudoalteromonas atlantica T6c 4171773 YP_659660.1 CDS Patl_0074 NC_008228.1 87003 87830 R PFAM: alpha/beta hydrolase fold; KEGG: rba:RB13257 probable oxidoreductase-putative hydrolase involved in aromatic ring cleavage; alpha/beta hydrolase fold protein complement(87003..87830) Pseudoalteromonas atlantica T6c 4171774 YP_659661.1 CDS Patl_0075 NC_008228.1 88840 89112 R PFAM: Fe(II) trafficking protein YggX; KEGG: ilo:IL1984 hypothetical protein; hypothetical protein complement(88840..89112) Pseudoalteromonas atlantica T6c 4171776 YP_659662.1 CDS Patl_0076 NC_008228.1 89226 90290 R KEGG: son:SO3368 A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif HhH-GPD; SMART: Iron-sulfur cluster loop; A/G-specific adenine glycosylase complement(89226..90290) Pseudoalteromonas atlantica T6c 4171777 YP_659663.1 CDS Patl_0077 NC_008228.1 90367 91098 D PFAM: alpha/beta hydrolase fold; KEGG: bba:Bd0910 putative hydrolase; alpha/beta hydrolase fold protein 90367..91098 Pseudoalteromonas atlantica T6c 4171778 YP_659664.1 CDS trmB NC_008228.1 91179 91898 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 91179..91898 Pseudoalteromonas atlantica T6c 4171779 YP_659665.1 CDS Patl_0079 NC_008228.1 91898 92929 D PFAM: methyltransferase small Methyltransferase small-like; KEGG: pha:PSHAa0552 ribosomal RNA small subunit methyltransferase C; rRNA (guanine-N(2)-)-methyltransferase 91898..92929 Pseudoalteromonas atlantica T6c 4171780 YP_659666.1 CDS glgA NC_008228.1 93048 94478 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 93048..94478 Pseudoalteromonas atlantica T6c 4171781 YP_659667.1 CDS Patl_0081 NC_008228.1 94987 96576 D PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: ilo:IL0492 signal transduction histidine kinase (contains HAMP domain); histidine kinase 94987..96576 Pseudoalteromonas atlantica T6c 4171782 YP_659668.1 CDS Patl_0082 NC_008228.1 96793 97500 D PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: hit:NTHI1047 aerobic respiration control protein ArcA; two-component response regulator 96793..97500 Pseudoalteromonas atlantica T6c 4171783 YP_659669.1 CDS Patl_0083 NC_008228.1 97568 98053 R PFAM: FxsA cytoplasmic membrane protein; KEGG: vpa:VP2862 FxsA protein; FxsA cytoplasmic membrane protein complement(97568..98053) Pseudoalteromonas atlantica T6c 4171784 YP_659670.1 CDS dipZ NC_008228.1 98333 100111 D two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein 98333..100111 Pseudoalteromonas atlantica T6c 4171785 YP_659671.1 CDS Patl_0085 NC_008228.1 100158 101012 D KEGG: cac:CAC3665 alpha/beta superfamily hydrolase; hypothetical protein 100158..101012 Pseudoalteromonas atlantica T6c 4171786 YP_659672.1 CDS upp NC_008228.1 101096 101725 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(101096..101725) Pseudoalteromonas atlantica T6c 4172858 YP_659673.1 CDS Patl_0087 NC_008228.1 101751 102350 R PFAM: protein of unknown function DUF479; KEGG: vch:VCA0769 hypothetical protein; hypothetical protein complement(101751..102350) Pseudoalteromonas atlantica T6c 4172859 YP_659674.1 CDS Patl_0088 NC_008228.1 102565 103050 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 102565..103050 Pseudoalteromonas atlantica T6c 4172860 YP_659675.1 CDS Patl_0089 NC_008228.1 103110 103556 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment; KEGG: vvy:VV3135 biotin carboxyl carrier protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein 103110..103556 Pseudoalteromonas atlantica T6c 4172861 YP_659676.1 CDS Patl_0090 NC_008228.1 103571 104920 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding Carbamoyl-phosphate synthetase large chain-like biotin carboxylase-like RimK-like ATP-grasp; KEGG: ppr:PBPRA3406 putative acetyl-CoA carboxylase, biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase 103571..104920 Pseudoalteromonas atlantica T6c 4172862 YP_659677.1 CDS Patl_0091 NC_008228.1 104987 106351 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cps:CPS_2888 MATE efflux family protein; MATE efflux family protein complement(104987..106351) Pseudoalteromonas atlantica T6c 4172863 YP_659678.1 CDS prmA NC_008228.1 106492 107370 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 106492..107370 Pseudoalteromonas atlantica T6c 4172864 YP_659679.1 CDS Patl_0093 NC_008228.1 107394 107906 R PFAM: helix-turn-helix, HxlR type; KEGG: hch:HCH_00848 predicted transcriptional regulator; HxlR family transcriptional regulator complement(107394..107906) Pseudoalteromonas atlantica T6c 4172865 YP_659680.1 CDS Patl_0094 NC_008228.1 108325 108507 D KEGG: cps:CPS_3716 glycosyl hydrolase, family 16; hypothetical protein 108325..108507 Pseudoalteromonas atlantica T6c 4172866 YP_659681.1 CDS Patl_0095 NC_008228.1 108792 109910 D PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: ath:At2g36310 inosine-uridine preferring nucleoside hydrolase family protein; inosine/uridine-preferring nucleoside hydrolase 108792..109910 Pseudoalteromonas atlantica T6c 4172867 YP_659682.1 CDS Patl_0096 NC_008228.1 110016 111032 R hypothetical protein complement(110016..111032) Pseudoalteromonas atlantica T6c 4172868 YP_659683.1 CDS Patl_0097 NC_008228.1 111033 111287 R hypothetical protein complement(111033..111287) Pseudoalteromonas atlantica T6c 4172869 YP_659684.1 CDS Patl_0098 NC_008228.1 111594 112109 R PFAM: sodium/calcium exchanger membrane region; KEGG: cef:CE0451 Ca2+:cation antiporter, CaCA family; sodium/calcium exchanger membrane region complement(111594..112109) Pseudoalteromonas atlantica T6c 4172870 YP_659685.1 CDS Patl_0099 NC_008228.1 112604 114013 D KEGG: cps:CPS_1161 putative lipoprotein; hypothetical protein 112604..114013 Pseudoalteromonas atlantica T6c 4172871 YP_659686.1 CDS Patl_0100 NC_008228.1 114100 114525 R PFAM: regulatory protein, MarR; KEGG: pha:PSHAb0179 putative OhrR transcriptional regulator, MarR/EmrR family; MarR family transcriptional regulator complement(114100..114525) Pseudoalteromonas atlantica T6c 4172872 YP_659687.1 CDS Patl_0101 NC_008228.1 114655 115083 D PFAM: OsmC-like protein; KEGG: pha:PSHAb0180 putative organic hydroperoxide resistance protein; OsmC-like protein 114655..115083 Pseudoalteromonas atlantica T6c 4172873 YP_659688.1 CDS Patl_0102 NC_008228.1 115463 116398 D PFAM: ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: bja:blr6138 hypothetical protein; ATPase 115463..116398 Pseudoalteromonas atlantica T6c 4172874 YP_659689.1 CDS Patl_0103 NC_008228.1 116399 117769 D PFAM: VWA containing CoxE-like; KEGG: rpb:RPB_0718 VWA containing CoxE-like; VWA containing CoxE-like 116399..117769 Pseudoalteromonas atlantica T6c 4172875 YP_659690.1 CDS Patl_0104 NC_008228.1 117774 118760 R PFAM: helix-turn-helix, AraC type; KEGG: pfl:PFL_5085 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(117774..118760) Pseudoalteromonas atlantica T6c 4172876 YP_659691.1 CDS Patl_0105 NC_008228.1 118957 120147 D PFAM: acyl-CoA dehydrogenase-like; KEGG: ccr:CC1310 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase-like protein 118957..120147 Pseudoalteromonas atlantica T6c 4171787 YP_659692.1 CDS Patl_0106 NC_008228.1 120150 121289 D PFAM: acyl-CoA dehydrogenase-like; KEGG: rpb:RPB_1750 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase-like protein 120150..121289 Pseudoalteromonas atlantica T6c 4171788 YP_659693.1 CDS Patl_0107 NC_008228.1 123037 123513 R TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB region; KEGG: vpa:VP0152 transcription elongation factor GreB; transcription elongation factor GreB complement(123037..123513) Pseudoalteromonas atlantica T6c 4171789 YP_659694.1 CDS Patl_0108 NC_008228.1 123970 124719 R PFAM: FKBP-type peptidyl-prolyl isomerase-like peptidylprolyl isomerase, FKBP-type; KEGG: pha:PSHAa2901 periplasmic peptidyl-prolyl cis-trans isomerase; peptidyl-prolyl isomerase complement(123970..124719) Pseudoalteromonas atlantica T6c 4171790 YP_659695.1 CDS Patl_0109 NC_008228.1 124838 125812 D PFAM: WD-40 repeat; KEGG: pha:PSHAa2902 G-protein beta WD-40 repeat; WD-40 repeat-containing protein 124838..125812 Pseudoalteromonas atlantica T6c 4171791 YP_659696.1 CDS Patl_0110 NC_008228.1 125825 126037 D PFAM: SlyX; KEGG: vpa:VP2780 SlyX protein; SlyX family protein 125825..126037 Pseudoalteromonas atlantica T6c 4171792 YP_659697.1 CDS Patl_0111 NC_008228.1 126077 126283 R TIGRFAM: conserved hypothetical protein; KEGG: cps:CPS_0434 conserved hypothetical protein; hypothetical protein complement(126077..126283) Pseudoalteromonas atlantica T6c 4171793 YP_659698.1 CDS Patl_0112 NC_008228.1 126363 128315 D PFAM: ABC transporter related; SMART: ATPase; KEGG: ppr:PBPRA0301 putative ABC transporter, ATP-binding protein; ABC transporter-like protein 126363..128315 Pseudoalteromonas atlantica T6c 4171794 YP_659699.1 CDS Patl_0113 NC_008228.1 128355 128924 D PFAM: GCN5-related N-acetyltransferase; KEGG: reu:Reut_A1932 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 128355..128924 Pseudoalteromonas atlantica T6c 4171795 YP_659700.1 CDS Patl_0114 NC_008228.1 128929 129813 R PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: cvi:CV0764 probable transcriptional regulator, LysR family; LysR family transcriptional regulator complement(128929..129813) Pseudoalteromonas atlantica T6c 4171796 YP_659701.1 CDS Patl_0115 NC_008228.1 129932 131038 D PFAM: conserved hypothetical protein 698; KEGG: yps:YPTB1338 hypothetical protein; hypothetical protein 129932..131038 Pseudoalteromonas atlantica T6c 4171797 YP_659702.1 CDS Patl_0116 NC_008228.1 131145 133427 R TIGRFAM: putative alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: bfs:BF1814 putative outer membrane protein; putative alpha-1,2-mannosidase complement(131145..133427) Pseudoalteromonas atlantica T6c 4171798 YP_659703.1 CDS Patl_0117 NC_008228.1 133424 135652 R TIGRFAM: putative alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: bfr:BF0757 putative alpha-1,2-mannosidase; putative alpha-1,2-mannosidase complement(133424..135652) Pseudoalteromonas atlantica T6c 4171799 YP_659704.1 CDS Patl_0118 NC_008228.1 135665 136852 R PFAM: N-acylglucosamine 2-epimerase; KEGG: cps:CPS_2647 hypothetical protein; N-acylglucosamine 2-epimerase complement(135665..136852) Pseudoalteromonas atlantica T6c 4171800 YP_659705.1 CDS Patl_0119 NC_008228.1 136932 138209 R TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_2649 glucose/galactose transporter family protein; glucose/galactose transporter complement(136932..138209) Pseudoalteromonas atlantica T6c 4171801 YP_659706.1 CDS Patl_0120 NC_008228.1 138266 140584 R TIGRFAM: putative alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: bth:BT3962 putative sugar hydrolase; putative alpha-1,2-mannosidase complement(138266..140584) Pseudoalteromonas atlantica T6c 4171802 YP_659707.1 CDS Patl_0121 NC_008228.1 140937 141944 D PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: vch:VC2677 transcriptional repressor, LacI family; LacI family transcriptional regulator 140937..141944 Pseudoalteromonas atlantica T6c 4171803 YP_659708.1 CDS Patl_0122 NC_008228.1 142237 145131 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAb0165 putative TonB-dependent receptor; outer membrane; TonB-dependent receptor 142237..145131 Pseudoalteromonas atlantica T6c 4171804 YP_659709.1 CDS Patl_0123 NC_008228.1 145201 148035 D PFAM: coagulation factor 5/8 type-like; KEGG: sma:SAV2252 putative ATP/GTP-binding protein; coagulation factor 5/8 type-like protein 145201..148035 Pseudoalteromonas atlantica T6c 4171805 YP_659710.1 CDS Patl_0124 NC_008228.1 148122 148991 D PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: cps:CPS_1026 BadF/BadG/BcrA/BcrD ATPase family protein; BadF/BadG/BcrA/BcrD type ATPase 148122..148991 Pseudoalteromonas atlantica T6c 4171806 YP_659711.1 CDS Patl_0125 NC_008228.1 149032 150015 D KEGG: xcb:XC_1195 asparaginase; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: peptidase T2, asparaginase 2; twin-arginine translocation pathway signal protein 149032..150015 Pseudoalteromonas atlantica T6c 4172152 YP_659712.1 CDS Patl_0126 NC_008228.1 150012 151772 D PFAM: glycoside hydrolase, family 85; KEGG: bha:BH0785 endo-beta-N-acetylglucosaminidase; glycoside hydrolase 150012..151772 Pseudoalteromonas atlantica T6c 4172153 YP_659713.1 CDS Patl_0127 NC_008228.1 151772 152509 D PFAM: CutC; KEGG: hsa:51076 cutC copper transporter homolog (E. coli); CutC protein 151772..152509 Pseudoalteromonas atlantica T6c 4172154 YP_659714.1 CDS Patl_0128 NC_008228.1 152568 155183 D PFAM: glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, sugar binding; KEGG: bfr:BF1733 beta-mannosidase; glycoside hydrolase 152568..155183 Pseudoalteromonas atlantica T6c 4172155 YP_659715.1 CDS Patl_0129 NC_008228.1 155186 156976 D PFAM: Na+/solute symporter; KEGG: bth:BT3029 Na+/glucose symporter; Na+/solute symporter 155186..156976 Pseudoalteromonas atlantica T6c 4172156 YP_659716.1 CDS Patl_0130 NC_008228.1 157009 159252 D TIGRFAM: putative alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: bth:BT3773 hypothetical protein; putative alpha-1,2-mannosidase 157009..159252 Pseudoalteromonas atlantica T6c 4172157 YP_659717.1 CDS Patl_0131 NC_008228.1 159319 160314 D PFAM: sugar isomerase (SIS); KEGG: son:SO3506 glucosamine-6-phosphate isomerase; glutamine-fructose-6-phosphate transaminase 159319..160314 Pseudoalteromonas atlantica T6c 4172158 YP_659718.1 CDS Patl_0132 NC_008228.1 160684 161109 D KEGG: xac:XAC3767 hypothetical protein; hypothetical protein 160684..161109 Pseudoalteromonas atlantica T6c 4172159 YP_659719.1 CDS Patl_0133 NC_008228.1 161124 162251 D KEGG: hch:HCH_06070 hypothetical protein; hypothetical protein 161124..162251 Pseudoalteromonas atlantica T6c 4172160 YP_659720.1 CDS Patl_0134 NC_008228.1 162445 163506 D PFAM: alpha/beta hydrolase fold; KEGG: pha:PSHAa2908 enzyme with alpha/beta-hydrolase domain; alpha/beta hydrolase fold protein 162445..163506 Pseudoalteromonas atlantica T6c 4172161 YP_659721.1 CDS Patl_0135 NC_008228.1 163527 163763 D PFAM: protein of unknown function UPF0270; KEGG: sec:SC3397 hypothetical protein; hypothetical protein 163527..163763 Pseudoalteromonas atlantica T6c 4172162 YP_659722.1 CDS Patl_0136 NC_008228.1 163800 164396 R PFAM: YceI; KEGG: hch:HCH_00246 hypothetical protein; YceI protein complement(163800..164396) Pseudoalteromonas atlantica T6c 4172163 YP_659723.1 CDS Patl_0137 NC_008228.1 164393 165229 R TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: ilo:IL0324 3'-phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase; 3'(2'),5'-bisphosphate nucleotidase complement(164393..165229) Pseudoalteromonas atlantica T6c 4172164 YP_659724.1 CDS nudE NC_008228.1 165229 165792 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE complement(165229..165792) Pseudoalteromonas atlantica T6c 4172165 YP_659725.1 CDS Patl_0139 NC_008228.1 165887 166570 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: cps:CPS_0423 HAD-superfamily hydrolase, subfamily IA, variant 3 family protein; HAD family hydrolase 165887..166570 Pseudoalteromonas atlantica T6c 4172166 YP_659726.1 CDS Patl_0140 NC_008228.1 166737 167270 D PFAM: Inorganic pyrophosphatase; KEGG: eca:ECA3593 inorganic pyrophosphatase; inorganic diphosphatase 166737..167270 Pseudoalteromonas atlantica T6c 4172167 YP_659727.1 CDS Patl_0141 NC_008228.1 167383 168615 D PFAM: major facilitator superfamily MFS_1; KEGG: vfi:VFA0729 transporter, MFS superfamily; major facilitator superfamily transporter 167383..168615 Pseudoalteromonas atlantica T6c 4172168 YP_659728.1 CDS Patl_0142 NC_008228.1 168612 169073 D KEGG: pha:PSHAa0449 hypothetical protein; hypothetical protein 168612..169073 Pseudoalteromonas atlantica T6c 4172169 YP_659729.1 CDS Patl_0143 NC_008228.1 169158 170777 D PFAM: histidine kinase, HAMP region chemotaxis sensory transducer; KEGG: hch:HCH_06069 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 169158..170777 Pseudoalteromonas atlantica T6c 4172170 YP_659730.1 CDS Patl_0144 NC_008228.1 170802 171509 R PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: pha:PSHAa0187 hypothetical protein; 2OG-Fe(II) oxygenase complement(170802..171509) Pseudoalteromonas atlantica T6c 4172631 YP_659731.1 CDS Patl_0145 NC_008228.1 171502 171909 R PFAM: thioesterase superfamily; KEGG: cps:CPS_0929 thioesterase family protein; thioesterase superfamily protein complement(171502..171909) Pseudoalteromonas atlantica T6c 4172632 YP_659732.1 CDS Patl_0146 NC_008228.1 171926 174754 R TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: ppr:PBPRA3290 putative excinuclease ABC, subunit A; excinuclease ABC subunit A complement(171926..174754) Pseudoalteromonas atlantica T6c 4172633 YP_659733.1 CDS Patl_0147 NC_008228.1 175046 176389 D PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa2706 transporter (MFS); major facilitator superfamily transporter 175046..176389 Pseudoalteromonas atlantica T6c 4172634 YP_659734.1 CDS Patl_0148 NC_008228.1 176706 177308 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: pha:PSHAa2705 single-strand binding protein (ssb) (helix-destabilizing protein); single-strand binding protein 176706..177308 Pseudoalteromonas atlantica T6c 4172635 YP_659735.1 CDS Patl_0149 NC_008228.1 177901 180309 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC3461 TonB-dependent receptor; TonB-dependent receptor 177901..180309 Pseudoalteromonas atlantica T6c 4172636 YP_659736.1 CDS Patl_0150 NC_008228.1 180520 180669 D KEGG: vfi:VF1472 zinc finger protein; zinc finger protein 180520..180669 Pseudoalteromonas atlantica T6c 4172637 YP_659737.1 CDS Patl_0151 NC_008228.1 180712 182199 R PFAM: DNA photolyase, FAD-binding; KEGG: vch:VC1392 deoxyribodipyrimidine photolyase, putative; deoxyribodipyrimidine photolyase complement(180712..182199) Pseudoalteromonas atlantica T6c 4172638 YP_659738.1 CDS Patl_0152 NC_008228.1 182192 183529 R PFAM: DNA photolyase, FAD-binding DNA photolyase-like; KEGG: ilo:IL0122 deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photolyase complement(182192..183529) Pseudoalteromonas atlantica T6c 4172639 YP_659739.1 CDS Patl_0153 NC_008228.1 183672 185084 R PFAM: aldehyde dehydrogenase; KEGG: reu:Reut_A1459 aldehyde dehydrogenase (NAD+); betaine aldehyde dehydrogenase complement(183672..185084) Pseudoalteromonas atlantica T6c 4172640 YP_659740.1 CDS Patl_0154 NC_008228.1 185095 186795 R PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO1971 AMP-binding family protein; AMP-dependent synthetase and ligase complement(185095..186795) Pseudoalteromonas atlantica T6c 4172641 YP_659741.1 CDS Patl_0155 NC_008228.1 186821 189145 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: nar:Saro_2601 TonB-dependent receptor; TonB-dependent receptor complement(186821..189145) Pseudoalteromonas atlantica T6c 4172642 YP_659742.1 CDS Patl_0156 NC_008228.1 189179 189631 R KEGG: nar:Saro_1690 cytochrome c, class I; cytochrome c, class I complement(189179..189631) Pseudoalteromonas atlantica T6c 4172643 YP_659743.1 CDS Patl_0157 NC_008228.1 189646 190203 R KEGG: nar:Saro_1688 amine dehydrogenase; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Methylamine dehydrogenase light chain, C terminal; twin-arginine translocation pathway signal protein complement(189646..190203) Pseudoalteromonas atlantica T6c 4172644 YP_659744.1 CDS Patl_0158 NC_008228.1 190218 190838 R PFAM: Redoxin; KEGG: nar:Saro_1687 hypothetical protein; redoxin complement(190218..190838) Pseudoalteromonas atlantica T6c 4172645 YP_659745.1 CDS Patl_0159 NC_008228.1 190845 191366 R KEGG: reu:Reut_B4079 hypothetical protein; hypothetical protein complement(190845..191366) Pseudoalteromonas atlantica T6c 4172646 YP_659746.1 CDS Patl_0160 NC_008228.1 191371 192522 R KEGG: nar:Saro_1685 amine dehydrogenase; amine dehydrogenase complement(191371..192522) Pseudoalteromonas atlantica T6c 4172647 YP_659747.1 CDS Patl_0161 NC_008228.1 192790 193455 D PFAM: regulatory protein, TetR; KEGG: nar:Saro_1684 transcriptional regulator, TetR family; TetR family transcriptional regulator 192790..193455 Pseudoalteromonas atlantica T6c 4172648 YP_659748.1 CDS Patl_0162 NC_008228.1 193549 193977 R PFAM: regulatory proteins, AsnC/Lrp Helix-turn-helix, type 11; KEGG: pha:PSHAb0429 putative transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(193549..193977) Pseudoalteromonas atlantica T6c 4172649 YP_659749.1 CDS argD NC_008228.1 194129 195334 D DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 194129..195334 Pseudoalteromonas atlantica T6c 4172650 YP_659750.1 CDS Patl_0164 NC_008228.1 195340 196380 D PFAM: arginine N-succinyltransferase beta subunit; KEGG: pha:PSHAb0427 putative arginine succinyltransferase; arginine N-succinyltransferase 195340..196380 Pseudoalteromonas atlantica T6c 4174028 YP_659751.1 CDS Patl_0165 NC_008228.1 196451 197257 D KEGG: pha:PSHAb0425 hypothetical protein; hypothetical protein 196451..197257 Pseudoalteromonas atlantica T6c 4174029 YP_659752.1 CDS Patl_0166 NC_008228.1 197510 198442 D KEGG: son:SO4114.2 hypothetical biogenesis protein MshI; hypothetical protein 197510..198442 Pseudoalteromonas atlantica T6c 4174030 YP_659753.1 CDS Patl_0167 NC_008228.1 198439 199050 D KEGG: vvu:VV11433 MSHA biogenesis protein MshI; hypothetical protein 198439..199050 Pseudoalteromonas atlantica T6c 4174031 YP_659754.1 CDS Patl_0168 NC_008228.1 199047 199739 D KEGG: son:SO4114 MSHA biogenesis protein MshJ; MSHA biogenesis protein MshJ 199047..199739 Pseudoalteromonas atlantica T6c 4174032 YP_659755.1 CDS Patl_0169 NC_008228.1 199741 200091 D hypothetical protein 199741..200091 Pseudoalteromonas atlantica T6c 4174033 YP_659756.1 CDS Patl_0170 NC_008228.1 200081 201733 D TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein Secretin-like Secretin/TonB, short N-terminal; KEGG: cps:CPS_4576 MSHA biogenesis protein MshL; pilus (MSHA type) biogenesis protein MshL 200081..201733 Pseudoalteromonas atlantica T6c 4174034 YP_659757.1 CDS Patl_0171 NC_008228.1 201738 202646 D KEGG: cps:CPS_4575 MSHA biogenesis protein MshM; MSHA biogenesis protein MshM 201738..202646 Pseudoalteromonas atlantica T6c 4174035 YP_659758.1 CDS Patl_0172 NC_008228.1 202643 203764 D KEGG: ilo:IL0369 membrane associated TPR repeats containing protein; hypothetical protein 202643..203764 Pseudoalteromonas atlantica T6c 4174036 YP_659759.1 CDS Patl_0173 NC_008228.1 203761 205674 D PFAM: type II secretion system protein E General secretory system II, protein E-like; KEGG: pha:PSHAa2692 mannose-sensitive agglutinin (MSHA) biogenesis protein MshE (pilus type IV); type II secretion system protein E 203761..205674 Pseudoalteromonas atlantica T6c 4174037 YP_659760.1 CDS Patl_0174 NC_008228.1 205667 206884 D PFAM: type II secretion system protein; KEGG: ilo:IL0371 type II secretory pathway; type II secretion system protein 205667..206884 Pseudoalteromonas atlantica T6c 4174038 YP_659761.1 CDS Patl_0175 NC_008228.1 206888 207400 D KEGG: cps:CPS_4571 hypothetical protein; hypothetical protein 206888..207400 Pseudoalteromonas atlantica T6c 4174039 YP_659762.1 CDS Patl_0176 NC_008228.1 207418 208056 D PFAM: methylation; KEGG: ilo:IL0373 pilin protein; prepilin-type cleavage/methylation protein 207418..208056 Pseudoalteromonas atlantica T6c 4174040 YP_659763.1 CDS Patl_0177 NC_008228.1 208160 208720 D PFAM: methylation; KEGG: pha:PSHAa2689 mannose-sensitive agglutinin (MSHA) biogenesis protein MshA (pilus type IV); prepilin-type cleavage/methylation protein 208160..208720 Pseudoalteromonas atlantica T6c 4174041 YP_659764.1 CDS Patl_0178 NC_008228.1 208803 209369 D PFAM: methylation; KEGG: cps:CPS_4568 MSHA pilin protein MshC; prepilin-type cleavage/methylation protein 208803..209369 Pseudoalteromonas atlantica T6c 4174042 YP_659765.1 CDS Patl_0179 NC_008228.1 209359 209928 D TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: pha:PSHAa2687 mannose-sensitive agglutinin (MSHA) biogenesis protein MshD (pilus type IV); prepilin-type cleavage/methylation-like protein 209359..209928 Pseudoalteromonas atlantica T6c 4174043 YP_659766.1 CDS Patl_0180 NC_008228.1 209928 210770 D PFAM: methylation; KEGG: cps:CPS_4566 putative MSHA biogenesis protein MshO; prepilin-type cleavage/methylation protein 209928..210770 Pseudoalteromonas atlantica T6c 4174044 YP_659767.1 CDS Patl_0181 NC_008228.1 210760 211200 D KEGG: ilo:IL0378 type II secretory pathway component; type II secretory pathway component 210760..211200 Pseudoalteromonas atlantica T6c 4174045 YP_659768.1 CDS Patl_0182 NC_008228.1 211200 215813 D PFAM: CUB; KEGG: hch:HCH_06140 hypothetical protein; CUB domain-containing protein 211200..215813 Pseudoalteromonas atlantica T6c 4174046 YP_659769.1 CDS Patl_0183 NC_008228.1 216079 217122 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 216079..217122 Pseudoalteromonas atlantica T6c 4171729 YP_659770.1 CDS Patl_0184 NC_008228.1 217173 218033 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 217173..218033 Pseudoalteromonas atlantica T6c 4171730 YP_659771.1 CDS Patl_0185 NC_008228.1 218030 218506 D PFAM: Rod shape-determining protein MreD; KEGG: cps:CPS_4558 rod shape-determining protein MreD; rod shape-determining protein MreD 218030..218506 Pseudoalteromonas atlantica T6c 4171731 YP_659772.1 CDS Patl_0186 NC_008228.1 218526 219104 D TIGRFAM: maf protein; PFAM: Maf-like protein; KEGG: vvy:VV2931 nucleotide-binding protein; maf protein 218526..219104 Pseudoalteromonas atlantica T6c 4171732 YP_659773.1 CDS Patl_0187 NC_008228.1 219094 220557 D involved in the processing of the 5'end of 16S rRNA; ribonuclease G 219094..220557 Pseudoalteromonas atlantica T6c 4171733 YP_659774.1 CDS Patl_0188 NC_008228.1 220554 224459 D TIGRFAM: conserved hypothetical protein; KEGG: pha:PSHAa2677 hypothetical protein; hypothetical protein 220554..224459 Pseudoalteromonas atlantica T6c 4171734 YP_659775.1 CDS Patl_0189 NC_008228.1 224452 225282 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ilo:IL0387 predicted amidohydrolase, nitrilase family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 224452..225282 Pseudoalteromonas atlantica T6c 4171735 YP_659776.1 CDS Patl_0190 NC_008228.1 225275 226717 D PFAM: peptidase U62, modulator of DNA gyrase; KEGG: pha:PSHAa2675 suppressor of CsrA inhibitory activity; peptidase; involved in the control of DNA gyrase; C69 family peptidase 225275..226717 Pseudoalteromonas atlantica T6c 4171736 YP_659777.1 CDS Patl_0191 NC_008228.1 226817 229252 R PFAM: Ig-like, group 1; KEGG: son:SO4080 hypothetical protein; Ig-like protein complement(226817..229252) Pseudoalteromonas atlantica T6c 4171737 YP_659778.1 CDS Patl_0192 NC_008228.1 229258 229785 R PFAM: protein of unknown function DUF615; KEGG: ilo:IL0389 hypothetical protein; hypothetical protein complement(229258..229785) Pseudoalteromonas atlantica T6c 4171738 YP_659779.1 CDS Patl_0193 NC_008228.1 229894 231219 D PFAM: peptidase U62, modulator of DNA gyrase; KEGG: vpa:VP2676 PmbA protein; C69 family peptidase 229894..231219 Pseudoalteromonas atlantica T6c 4171739 YP_659780.1 CDS Patl_0194 NC_008228.1 231294 233210 R PFAM: peptidase S9, prolyl oligopeptidase active site region; KEGG: gvi:glr0176 unknown protein; peptidase S9, prolyl oligopeptidase active site region complement(231294..233210) Pseudoalteromonas atlantica T6c 4171740 YP_659781.1 CDS Patl_0195 NC_008228.1 233297 234409 R hypothetical protein complement(233297..234409) Pseudoalteromonas atlantica T6c 4171741 YP_659782.1 CDS Patl_0196 NC_008228.1 234578 235192 D PFAM: glutathione S-transferase-like; KEGG: cps:CPS_2495 putative glutathione S-transferase; glutathione S-transferase-like protein 234578..235192 Pseudoalteromonas atlantica T6c 4171742 YP_659783.1 CDS Patl_0197 NC_008228.1 235224 235679 R PFAM: protein of unknown function DUF107; KEGG: pha:PSHAb0271 hypothetical protein; hypothetical protein complement(235224..235679) Pseudoalteromonas atlantica T6c 4171743 YP_659784.1 CDS Patl_0198 NC_008228.1 235660 236616 R PFAM: band 7 protein; KEGG: pha:PSHAb0272 hypothetical protein; hypothetical protein complement(235660..236616) Pseudoalteromonas atlantica T6c 4171744 YP_659785.1 CDS Patl_0199 NC_008228.1 236751 238082 R catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase complement(236751..238082) Pseudoalteromonas atlantica T6c 4171745 YP_659786.1 CDS Patl_0200 NC_008228.1 238178 240091 R PFAM: Lytic transglycosylase, catalytic; KEGG: cps:CPS_0011 putative soluble lytic murein transglycosylase; lytic transglycosylase catalytic subunit complement(238178..240091) Pseudoalteromonas atlantica T6c 4171746 YP_659787.1 CDS fadB NC_008228.1 240399 242558 D includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 240399..242558 Pseudoalteromonas atlantica T6c 4171747 YP_659788.1 CDS fadA NC_008228.1 242580 243740 D FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 242580..243740 Pseudoalteromonas atlantica T6c 4171748 YP_659789.1 CDS Patl_0203 NC_008228.1 243936 246038 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: bfs:BF2697 putative exported TonB-dependent receptor protein; TonB-dependent receptor, plug complement(243936..246038) Pseudoalteromonas atlantica T6c 4171749 YP_659790.1 CDS Patl_0204 NC_008228.1 246371 247648 D PFAM: major facilitator superfamily MFS_1; KEGG: noc:Noc_1547 major facilitator superfamily MFS_1; major facilitator superfamily transporter 246371..247648 Pseudoalteromonas atlantica T6c 4171750 YP_659791.1 CDS Patl_0205 NC_008228.1 247723 248220 D KEGG: pha:PSHAa1074 hypothetical protein; hypothetical protein 247723..248220 Pseudoalteromonas atlantica T6c 4171751 YP_659792.1 CDS Patl_0206 NC_008228.1 248297 250039 R KEGG: sbo:SBO_1464 hypothetical protein; hypothetical protein complement(248297..250039) Pseudoalteromonas atlantica T6c 4171752 YP_659793.1 CDS Patl_0207 NC_008228.1 250329 251219 R KEGG: vvy:VVA0953 dienelactone hydrolase; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: dienelactone hydrolase; twin-arginine translocation pathway signal protein complement(250329..251219) Pseudoalteromonas atlantica T6c 4171753 YP_659794.1 CDS Patl_0208 NC_008228.1 251449 252048 R PFAM: regulatory protein, TetR; KEGG: cps:CPS_1681 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(251449..252048) Pseudoalteromonas atlantica T6c 4171754 YP_659795.1 CDS Patl_0209 NC_008228.1 252198 252932 D PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR Male sterility-like; KEGG: rba:RB3632 conserved hypothetical protein-putative short chain dehydrogenase; short chain dehydrogenase 252198..252932 Pseudoalteromonas atlantica T6c 4171755 YP_659796.1 CDS Patl_0210 NC_008228.1 253297 254175 D PFAM: protein of unknown function DUF344; KEGG: rpa:RPA4569 DUF344; hypothetical protein 253297..254175 Pseudoalteromonas atlantica T6c 4171756 YP_659797.1 CDS Patl_0211 NC_008228.1 254179 255201 R PFAM: Patatin; KEGG: wol:WD0565 patatin family protein; patatin complement(254179..255201) Pseudoalteromonas atlantica T6c 4171757 YP_659798.1 CDS Patl_0212 NC_008228.1 255445 256689 R PFAM: aminotransferase, class V aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mag:amb2464 serine-pyruvate aminotransferase; class V aminotransferase complement(255445..256689) Pseudoalteromonas atlantica T6c 4171758 YP_659799.1 CDS Patl_0213 NC_008228.1 256999 257700 D PFAM: protein of unknown function DUF161; KEGG: hch:HCH_02915 hypothetical protein; hypothetical protein 256999..257700 Pseudoalteromonas atlantica T6c 4171759 YP_659800.1 CDS Patl_0214 NC_008228.1 257682 258101 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ilo:IL0221 predicted dioxygenase of extradiol dioxygenase family; glyoxalase/bleomycin resistance protein/dioxygenase complement(257682..258101) Pseudoalteromonas atlantica T6c 4171760 YP_659801.1 CDS Patl_0215 NC_008228.1 258225 259523 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(258225..259523) Pseudoalteromonas atlantica T6c 4171761 YP_659802.1 CDS Patl_0216 NC_008228.1 259605 259790 R KEGG: vpa:VP2813 hypothetical protein; hypothetical protein complement(259605..259790) Pseudoalteromonas atlantica T6c 4171762 YP_659803.1 CDS Patl_0217 NC_008228.1 259847 261346 R PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: cps:CPS_0650 sensor histidine kinase; sensor signal transduction histidine kinase complement(259847..261346) Pseudoalteromonas atlantica T6c 4171763 YP_659804.1 CDS Patl_0218 NC_008228.1 261346 262065 R PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: cps:CPS_0651 DNA-binding response regulator; two component transcriptional regulator complement(261346..262065) Pseudoalteromonas atlantica T6c 4171764 YP_659805.1 CDS Patl_0219 NC_008228.1 262171 262890 R KEGG: cps:CPS_0652 hypothetical protein; hypothetical protein complement(262171..262890) Pseudoalteromonas atlantica T6c 4171765 YP_659806.1 CDS Patl_0220 NC_008228.1 262901 263605 R KEGG: cps:CPS_0653 hypothetical protein; hypothetical protein complement(262901..263605) Pseudoalteromonas atlantica T6c 4171766 YP_659807.1 CDS Patl_0221 NC_008228.1 263790 264875 R KEGG: pha:PSHAb0433 hypothetical protein; hypothetical protein complement(263790..264875) Pseudoalteromonas atlantica T6c 4171767 YP_659808.1 CDS Patl_0222 NC_008228.1 265252 265473 D hypothetical protein 265252..265473 Pseudoalteromonas atlantica T6c 4171709 YP_659809.1 CDS Patl_0223 NC_008228.1 265559 266632 R PFAM: peptidase M42; KEGG: tcx:Tcr_0276 hypothetical protein; peptidase M42 complement(265559..266632) Pseudoalteromonas atlantica T6c 4171710 YP_659810.1 CDS Patl_0224 NC_008228.1 266714 267616 R PFAM: phosphoribulokinase/uridine kinase; KEGG: ilo:IL2312 phosphoribulokinase; phosphoribulokinase complement(266714..267616) Pseudoalteromonas atlantica T6c 4171711 YP_659811.1 CDS ompR NC_008228.1 268013 268735 D part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 268013..268735 Pseudoalteromonas atlantica T6c 4171712 YP_659812.1 CDS envZ NC_008228.1 268761 270059 D membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 268761..270059 Pseudoalteromonas atlantica T6c 4171713 YP_659813.1 CDS hslO NC_008228.1 270114 271007 R becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin complement(270114..271007) Pseudoalteromonas atlantica T6c 4171714 YP_659814.1 CDS Patl_0228 NC_008228.1 271040 271456 R PFAM: RNA-binding S4; KEGG: ilo:IL2028 ribosome-associated heat shock protein implicated in the recycling of the 50S subunit; RNA-binding protein S4 complement(271040..271456) Pseudoalteromonas atlantica T6c 4171715 YP_659815.1 CDS Patl_0229 NC_008228.1 271615 272310 D PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: neu:NE0658 short-chain dehydrogenase/reductase (SDR) superfamily; short-chain dehydrogenase/reductase SDR 271615..272310 Pseudoalteromonas atlantica T6c 4171716 YP_659816.1 CDS Patl_0230 NC_008228.1 272455 273309 D TIGRFAM: general secretion pathway protein C; KEGG: cps:CPS_4592 general secretion pathway protein C; general secretion pathway protein C 272455..273309 Pseudoalteromonas atlantica T6c 4171717 YP_659817.1 CDS Patl_0231 NC_008228.1 273315 275384 D TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein NolW-like; KEGG: cps:CPS_4591 general secretion pathway protein D; general secretion pathway protein D 273315..275384 Pseudoalteromonas atlantica T6c 4171718 YP_659818.1 CDS Patl_0232 NC_008228.1 275387 276964 D KEGG: ilo:IL2025 type II secretory pathway, ATPase PulE-like; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: ATPase; general secretory pathway protein E 275387..276964 Pseudoalteromonas atlantica T6c 4171719 YP_659819.1 CDS Patl_0233 NC_008228.1 276966 278186 D TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: ppr:PBPRA3479 putative general secretion pathway protein F; general secretion pathway protein F 276966..278186 Pseudoalteromonas atlantica T6c 4171720 YP_659820.1 CDS Patl_0234 NC_008228.1 278186 278626 D TIGRFAM: general secretion pathway protein G; PFAM: methylation type II secretion system protein G; KEGG: eca:ECA3106 general secretion pathway protein G; general secretion pathway protein G 278186..278626 Pseudoalteromonas atlantica T6c 4171721 YP_659821.1 CDS Patl_0235 NC_008228.1 278669 279277 D TIGRFAM: general secretion pathway protein H; PFAM: methylation; KEGG: cps:CPS_4587 general secretion pathway protein H; general secretion pathway protein H 278669..279277 Pseudoalteromonas atlantica T6c 4171722 YP_659822.1 CDS Patl_0236 NC_008228.1 279274 279669 D TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J methylation; KEGG: cps:CPS_4586 general secretion pathway protein I; general secretion pathway protein I 279274..279669 Pseudoalteromonas atlantica T6c 4171723 YP_659823.1 CDS Patl_0237 NC_008228.1 279656 280354 D TIGRFAM: general secretion pathway protein J; PFAM: methylation; KEGG: cps:CPS_4585 general secretion pathway protein J; general secretion pathway protein J 279656..280354 Pseudoalteromonas atlantica T6c 4171724 YP_659824.1 CDS Patl_0238 NC_008228.1 280351 281355 D PFAM: General secretion pathway protein K; KEGG: son:SO0173 general secretion pathway protein K; general secretion pathway protein K 280351..281355 Pseudoalteromonas atlantica T6c 4171725 YP_659825.1 CDS Patl_0239 NC_008228.1 281435 282628 D TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: son:SO0174 general secretion pathway protein L; general secretion pathway protein L 281435..282628 Pseudoalteromonas atlantica T6c 4171726 YP_659826.1 CDS Patl_0240 NC_008228.1 282630 283109 D PFAM: General secretion pathway M protein; KEGG: son:SO0175 general secretion pathway protein M; general secretion pathway M protein 282630..283109 Pseudoalteromonas atlantica T6c 4171727 YP_659827.1 CDS Patl_0241 NC_008228.1 283106 283849 D PFAM: type II secretion system protein N; KEGG: pha:PSHAa0242 general secretion pathway protein N; type II secretion system protein N 283106..283849 Pseudoalteromonas atlantica T6c 4171728 YP_659828.1 CDS Patl_0242 NC_008228.1 283943 284914 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(283943..284914) Pseudoalteromonas atlantica T6c 4173989 YP_659829.1 CDS Patl_0243 NC_008228.1 285140 286486 D TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase-like cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; KEGG: vfi:VF0265 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 285140..286486 Pseudoalteromonas atlantica T6c 4173990 YP_659830.1 CDS Patl_0244 NC_008228.1 286546 287316 D PFAM: S1/P1 nuclease; KEGG: pha:PSHAb0342 putative S1/P1 nuclease; S1/P1 nuclease 286546..287316 Pseudoalteromonas atlantica T6c 4173991 YP_659831.1 CDS Patl_0245 NC_008228.1 287391 288458 R KEGG: vfi:VF2402 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase complement(287391..288458) Pseudoalteromonas atlantica T6c 4173992 YP_659832.1 CDS Patl_0246 NC_008228.1 288710 289525 R PFAM: NUDIX hydrolase; KEGG: ilo:IL2307 NUDIX family pyrophosphohydrolases containing a Zn-finger; NUDIX hydrolase complement(288710..289525) Pseudoalteromonas atlantica T6c 4173993 YP_659833.1 CDS Patl_0247 NC_008228.1 289860 290291 D PFAM: ferric-uptake regulator; KEGG: pha:PSHAa0493 zinc uptake regulation protein; ferric uptake regulator family protein 289860..290291 Pseudoalteromonas atlantica T6c 4173994 YP_659834.1 CDS Patl_0248 NC_008228.1 290341 290805 D PFAM: CheC-like protein; KEGG: ilo:IL1932 chemotaxis protein CheX; CheC-like protein 290341..290805 Pseudoalteromonas atlantica T6c 4173995 YP_659835.1 CDS Patl_0249 NC_008228.1 290795 291232 D PFAM: protein of unknown function UPF0047; KEGG: vpa:VP2732 hypothetical protein; hypothetical protein 290795..291232 Pseudoalteromonas atlantica T6c 4173996 YP_659836.1 CDS Patl_0250 NC_008228.1 291321 292427 D PFAM: Thrombospondin type 3 repeat OmpA/MotB OmpF; KEGG: cps:CPS_0958 OmpA family protein; OmpA/MotB protein 291321..292427 Pseudoalteromonas atlantica T6c 4173997 YP_659837.1 CDS Patl_0251 NC_008228.1 292531 293967 R KEGG: son:SO3917 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB-like helicase-like; SMART: ATPase; replicative DNA helicase complement(292531..293967) Pseudoalteromonas atlantica T6c 4173998 YP_659838.1 CDS Patl_0252 NC_008228.1 294077 295885 R TIGRFAM: ATP-dependent DNA helicase, RecQ family ATP-dependent DNA helicase RecQ; PFAM: helicase-like HRDC DEAD/DEAH box helicase-like; KEGG: pha:PSHAa2572 ATP-dependent DNA helicase; ATP-dependent DNA helicase RecQ complement(294077..295885) Pseudoalteromonas atlantica T6c 4173999 YP_659839.1 CDS Patl_0253 NC_008228.1 296014 296487 D TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily; KEGG: pha:PSHAa2571 hypothetical protein; hypothetical protein 296014..296487 Pseudoalteromonas atlantica T6c 4174000 YP_659840.1 CDS Patl_0254 NC_008228.1 296594 297028 R PFAM: globin; KEGG: hch:HCH_01422 truncated hemoglobin; globin complement(296594..297028) Pseudoalteromonas atlantica T6c 4174001 YP_659841.1 CDS Patl_0255 NC_008228.1 297028 297876 R KEGG: hch:HCH_01423 hypothetical protein; hypothetical protein complement(297028..297876) Pseudoalteromonas atlantica T6c 4174002 YP_659842.1 CDS Patl_0256 NC_008228.1 297866 300202 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: hch:HCH_01424 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain; diguanylate cyclase/phosphodiesterase complement(297866..300202) Pseudoalteromonas atlantica T6c 4174003 YP_659843.1 CDS Patl_0257 NC_008228.1 300203 300925 R KEGG: pha:PSHAa0455 hypothetical protein; hypothetical protein complement(300203..300925) Pseudoalteromonas atlantica T6c 4174004 YP_659844.1 CDS Patl_0258 NC_008228.1 301220 301822 D KEGG: pha:PSHAa2575 hypothetical protein; hypothetical protein 301220..301822 Pseudoalteromonas atlantica T6c 4174005 YP_659845.1 CDS Patl_0259 NC_008228.1 301976 302893 D PFAM: MscS Mechanosensitive ion channel; KEGG: pha:PSHAa0358 hypothetical protein; mechanosensitive ion channel protein MscS 301976..302893 Pseudoalteromonas atlantica T6c 4174006 YP_659846.1 CDS Patl_0260 NC_008228.1 303017 304756 D PFAM: surface antigen (D15); KEGG: pha:PSHAa1983 outer membrane protein; surface antigen (D15) 303017..304756 Pseudoalteromonas atlantica T6c 4174007 YP_659847.1 CDS Patl_0261 NC_008228.1 304753 308532 D PFAM: protein of unknown function DUF490; KEGG: vvu:VV10711 hypothetical protein; hypothetical protein 304753..308532 Pseudoalteromonas atlantica T6c 4171940 YP_659848.1 CDS Patl_0262 NC_008228.1 308799 310136 D PFAM: CBS domain containing protein MgtE integral membrane region MgtE intracellular region; KEGG: pha:PSHAa0712 magnesium transporter; MgtE integral membrane protein 308799..310136 Pseudoalteromonas atlantica T6c 4171941 YP_659849.1 CDS Patl_0263 NC_008228.1 310347 310526 D PFAM: protein of unknown function DUF1328; KEGG: rru:Rru_A0119 protein of unknown function DUF1328; hypothetical protein 310347..310526 Pseudoalteromonas atlantica T6c 4171942 YP_659850.1 CDS Patl_0264 NC_008228.1 310695 311258 D PFAM: transport-associated; KEGG: vpa:VP0081 putative hyperosmotically inducible periplasmic protein; transport-associated protein 310695..311258 Pseudoalteromonas atlantica T6c 4171943 YP_659851.1 CDS Patl_0265 NC_008228.1 311580 312512 D TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein response regulator receiver; KEGG: hch:HCH_00862 response regulator containing a CheY-like receiver domain and a GGDEF domain; diguanylate cyclase 311580..312512 Pseudoalteromonas atlantica T6c 4171944 YP_659852.1 CDS Patl_0266 NC_008228.1 312664 313947 R KEGG: vpa:VP2898 phosphoribosylamine-glycine ligase; TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase protein of unknown function DUF201; phosphoribosylamine--glycine ligase complement(312664..313947) Pseudoalteromonas atlantica T6c 4171945 YP_659853.1 CDS Patl_0267 NC_008228.1 314049 314855 R KEGG: pha:PSHAa0344 hypothetical protein; hypothetical protein complement(314049..314855) Pseudoalteromonas atlantica T6c 4171946 YP_659854.1 CDS Patl_0268 NC_008228.1 315013 316635 R KEGG: vpa:VP2896 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme MGS-like; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(315013..316635) Pseudoalteromonas atlantica T6c 4171947 YP_659855.1 CDS Patl_0269 NC_008228.1 316735 317028 R PFAM: helix-turn-helix, Fis-type; KEGG: pha:PSHAa0346 DNA-binding protein; Fis-type helix-turn-helix domain-containing protein complement(316735..317028) Pseudoalteromonas atlantica T6c 4171948 YP_659856.1 CDS Patl_0270 NC_008228.1 317058 318059 R TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: pha:PSHAa0347 tRNA-dihydrouridine synthase B; nifR3 family TIM-barrel protein complement(317058..318059) Pseudoalteromonas atlantica T6c 4171949 YP_659857.1 CDS Patl_0271 NC_008228.1 318371 318676 R KEGG: pha:PSHAa1272 hypothetical protein; hypothetical protein complement(318371..318676) Pseudoalteromonas atlantica T6c 4171950 YP_659858.1 CDS Patl_0272 NC_008228.1 318844 319689 D PFAM: Thioredoxin domain; KEGG: ilo:IL1994 thioredoxin domain-containing protein; thioredoxin domain-containing protein 318844..319689 Pseudoalteromonas atlantica T6c 4171951 YP_659859.1 CDS Patl_0273 NC_008228.1 319825 320709 R PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pha:PSHAa1830 transcriptional regulator with periplasmic binding protein domain (LysR); LysR family transcriptional regulator complement(319825..320709) Pseudoalteromonas atlantica T6c 4171952 YP_659860.1 CDS Patl_0274 NC_008228.1 320842 321492 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: pha:PSHAa1831 AhpC-TSA; redoxin 320842..321492 Pseudoalteromonas atlantica T6c 4171953 YP_659861.1 CDS Patl_0275 NC_008228.1 321604 322287 D TIGRFAM: haloacid dehalogenase, type II HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like) HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: pha:PSHAa1832 cryptic haloacid dehalogenase 1 (partial); haloacid dehalogenase 321604..322287 Pseudoalteromonas atlantica T6c 4171954 YP_659862.1 CDS Patl_0276 NC_008228.1 322466 323392 D KEGG: psb:Psyr_4383 esterase/lipase/thioesterase family protein; esterase/lipase/thioesterase family protein 322466..323392 Pseudoalteromonas atlantica T6c 4171955 YP_659863.1 CDS Patl_0277 NC_008228.1 323423 324010 D PFAM: pentapeptide repeat; KEGG: son:SO4064 mcbg protein, putative; pentapeptide repeat-containing protein 323423..324010 Pseudoalteromonas atlantica T6c 4171956 YP_659864.1 CDS Patl_0278 NC_008228.1 324848 325192 D hypothetical protein 324848..325192 Pseudoalteromonas atlantica T6c 4171957 YP_659865.1 CDS Patl_0279 NC_008228.1 325456 326493 D PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: son:SO1583 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase 325456..326493 Pseudoalteromonas atlantica T6c 4171958 YP_659866.1 CDS Patl_0280 NC_008228.1 326636 327058 D KEGG: dps:DP1414 hypothetical protein; hypothetical protein 326636..327058 Pseudoalteromonas atlantica T6c 4171959 YP_659867.1 CDS Patl_0281 NC_008228.1 327084 327299 D TIGRFAM: tryptophan-rich Ignore; KEGG: ilo:IL0283 hypothetical protein; hypothetical protein 327084..327299 Pseudoalteromonas atlantica T6c 4172914 YP_659868.1 CDS Patl_0282 NC_008228.1 327666 329345 D KEGG: xac:XAC1528 toxin secretion ABC transporter ATP-binding protein; toxin secretion ABC transporter ATP-binding protein 327666..329345 Pseudoalteromonas atlantica T6c 4172915 YP_659869.1 CDS Patl_0283 NC_008228.1 329338 330366 D KEGG: xcv:XCV1570 membrane fusion protein; membrane fusion protein 329338..330366 Pseudoalteromonas atlantica T6c 4172916 YP_659870.1 CDS Patl_0284 NC_008228.1 330366 331781 D KEGG: xcv:XCV1569 outer membrane efflux protein; Outer membrane protein-like 330366..331781 Pseudoalteromonas atlantica T6c 4172917 YP_659871.1 CDS Patl_0285 NC_008228.1 331820 332266 R hypothetical protein complement(331820..332266) Pseudoalteromonas atlantica T6c 4172918 YP_659872.1 CDS Patl_0286 NC_008228.1 332361 333713 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(332361..333713) Pseudoalteromonas atlantica T6c 4172919 YP_659873.1 CDS Patl_0287 NC_008228.1 333758 334144 R PFAM: transcription elongation factor GreA/GreB region; KEGG: ilo:IL0629 transcription elongation factor family protein; GreA/GreB family elongation factor complement(333758..334144) Pseudoalteromonas atlantica T6c 4172920 YP_659874.1 CDS Patl_0288 NC_008228.1 334620 335567 R hypothetical protein complement(334620..335567) Pseudoalteromonas atlantica T6c 4172921 YP_659875.1 CDS Patl_0289 NC_008228.1 335571 337343 R PFAM: Na+/solute symporter; KEGG: vpa:VPA0087 putative transporter; Na+/solute symporter complement(335571..337343) Pseudoalteromonas atlantica T6c 4172922 YP_659876.1 CDS Patl_0290 NC_008228.1 337355 338494 R PFAM: oxidoreductase-like; KEGG: bcl:ABC0577 oxidoreductase; oxidoreductase-like protein complement(337355..338494) Pseudoalteromonas atlantica T6c 4172923 YP_659877.1 CDS Patl_0291 NC_008228.1 338546 339817 R PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: rspA; starvation sensing protein RspA; mandelate racemase/muconate lactonizing-like protein complement(338546..339817) Pseudoalteromonas atlantica T6c 4172924 YP_659878.1 CDS Patl_0292 NC_008228.1 339963 340988 D PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: bcl:ABC3358 transcriptional regulator, LacI family; LacI family transcriptional regulator 339963..340988 Pseudoalteromonas atlantica T6c 4172925 YP_659879.1 CDS Patl_0293 NC_008228.1 341181 343094 R TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: hch:HCH_06292 choline-glycine betaine transporter; choline/carnitine/betaine transporter complement(341181..343094) Pseudoalteromonas atlantica T6c 4172926 YP_659880.1 CDS Patl_0294 NC_008228.1 343545 344942 R KEGG: cps:CPS_1901 putative lipoprotein; putative lipoprotein complement(343545..344942) Pseudoalteromonas atlantica T6c 4172927 YP_659881.1 CDS Patl_0295 NC_008228.1 344976 347369 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_1902 TonB-dependent receptor; TonB-dependent receptor complement(344976..347369) Pseudoalteromonas atlantica T6c 4172928 YP_659882.1 CDS Patl_0296 NC_008228.1 347587 348264 D KEGG: vvu:VV10717 hypothetical protein; hypothetical protein 347587..348264 Pseudoalteromonas atlantica T6c 4172929 YP_659883.1 CDS Patl_0297 NC_008228.1 348267 348746 D PFAM: ferric-uptake regulator; KEGG: hch:HCH_01703 Fe2+/Zn2+ uptake regulation protein; ferric uptake regulator family protein 348267..348746 Pseudoalteromonas atlantica T6c 4172930 YP_659884.1 CDS Patl_0298 NC_008228.1 348754 349164 D KEGG: cps:CPS_1818 hypothetical protein; hypothetical protein 348754..349164 Pseudoalteromonas atlantica T6c 4172931 YP_659885.1 CDS Patl_0299 NC_008228.1 349169 350416 D PFAM: cobalamin synthesis protein, P47K cobalamin synthesis CobW-like; KEGG: cps:CPS_1815 cobalamin synthesis protein/P47K family protein; cobalamin synthesis protein, P47K 349169..350416 Pseudoalteromonas atlantica T6c 4172932 YP_659886.1 CDS Patl_0300 NC_008228.1 350413 351114 D KEGG: cps:CPS_1816 hypothetical protein; hypothetical protein 350413..351114 Pseudoalteromonas atlantica T6c 4172894 YP_659887.1 CDS Patl_0301 NC_008228.1 351274 352194 D similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; putative GTP cyclohydrolase 351274..352194 Pseudoalteromonas atlantica T6c 4172895 YP_659888.1 CDS Patl_0302 NC_008228.1 352178 353173 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: vvy:VVA0896 hypothetical protein; endonuclease/exonuclease/phosphatase 352178..353173 Pseudoalteromonas atlantica T6c 4172896 YP_659889.1 CDS Patl_0303 NC_008228.1 353189 353848 R KEGG: cps:CPS_1814 hypothetical protein; hypothetical protein complement(353189..353848) Pseudoalteromonas atlantica T6c 4172897 YP_659890.1 CDS Patl_0304 NC_008228.1 353934 354473 R hypothetical protein complement(353934..354473) Pseudoalteromonas atlantica T6c 4172898 YP_659891.1 CDS Patl_0305 NC_008228.1 354474 355055 R KEGG: cps:CPS_1814 hypothetical protein; hypothetical protein complement(354474..355055) Pseudoalteromonas atlantica T6c 4172899 YP_659892.1 CDS Patl_0306 NC_008228.1 355161 356015 D PFAM: ABC transporter related; SMART: ATPase; KEGG: cps:CPS_1813 ABC transporter, ATP-binding protein; ABC transporter-like protein 355161..356015 Pseudoalteromonas atlantica T6c 4172900 YP_659893.1 CDS Patl_0307 NC_008228.1 356009 357241 D PFAM: protein of unknown function DUF214; KEGG: cps:CPS_1812 putative permease; hypothetical protein 356009..357241 Pseudoalteromonas atlantica T6c 4172901 YP_659894.1 CDS Patl_0308 NC_008228.1 357305 357682 R KEGG: ilo:IL2128 predicted flavoprotein; flavoprotein complement(357305..357682) Pseudoalteromonas atlantica T6c 4172902 YP_659895.1 CDS Patl_0309 NC_008228.1 357969 358229 R KEGG: pha:PSHAa1603 hypothetical protein; hypothetical protein complement(357969..358229) Pseudoalteromonas atlantica T6c 4172903 YP_659896.1 CDS Patl_0310 NC_008228.1 358477 359523 D PFAM: beta-lactamase-like; KEGG: bbr:BB4943 metallo-beta-lactamase family protein; beta-lactamase-like protein 358477..359523 Pseudoalteromonas atlantica T6c 4172904 YP_659897.1 CDS Patl_0311 NC_008228.1 359646 361739 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: nar:Saro_1823 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(359646..361739) Pseudoalteromonas atlantica T6c 4172905 YP_659898.1 CDS Patl_0312 NC_008228.1 362341 362946 D hypothetical protein 362341..362946 Pseudoalteromonas atlantica T6c 4172906 YP_659899.1 CDS Patl_0313 NC_008228.1 362950 364440 D PFAM: PepSY-associated TM helix; KEGG: pfo:Pfl_0927 aspartate kinase; PepSY-associated TM helix-containing protein 362950..364440 Pseudoalteromonas atlantica T6c 4172907 YP_659900.1 CDS Patl_0314 NC_008228.1 364502 365470 R PFAM: helix-turn-helix, AraC type; KEGG: hch:HCH_00884 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; AraC family transcriptional regulator complement(364502..365470) Pseudoalteromonas atlantica T6c 4172908 YP_659901.1 CDS Patl_0315 NC_008228.1 365581 366756 D PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: pfo:Pfl_3948 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase-like protein 365581..366756 Pseudoalteromonas atlantica T6c 4172909 YP_659902.1 CDS Patl_0316 NC_008228.1 366862 367824 D PFAM: 2-nitropropane dioxygenase, NPD; KEGG: dar:Daro_1554 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 366862..367824 Pseudoalteromonas atlantica T6c 4172910 YP_659903.1 CDS Patl_0317 NC_008228.1 367885 369498 D PFAM: carboxyl transferase; KEGG: pae:PA2888 propionyl-CoA carboxylase beta chain; carboxyl transferase 367885..369498 Pseudoalteromonas atlantica T6c 4172911 YP_659904.1 CDS Patl_0318 NC_008228.1 369583 370395 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pae:PA2890 probable enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 369583..370395 Pseudoalteromonas atlantica T6c 4172912 YP_659905.1 CDS Patl_0319 NC_008228.1 370438 372507 D PFAM: biotin/lipoyl attachment Carbamoyl-phosphate synthase L chain, ATP-binding Carbamoyl-phosphate synthetase large chain-like biotin carboxylase-like; KEGG: hch:HCH_05752 acetyl/propionyl-CoA carboxylase, alpha subunit; carbamoyl-phosphate synthase subunit L 370438..372507 Pseudoalteromonas atlantica T6c 4172913 YP_659906.1 CDS Patl_0320 NC_008228.1 372520 374331 D PFAM: protein of unknown function DUF1446; KEGG: hch:HCH_05745 predicted ATPase; hypothetical protein 372520..374331 Pseudoalteromonas atlantica T6c 4173142 YP_659907.1 CDS Patl_0321 NC_008228.1 374405 375277 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pfl:PFL_4195 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 374405..375277 Pseudoalteromonas atlantica T6c 4173143 YP_659908.1 CDS Patl_0322 NC_008228.1 375310 376905 D PFAM: AMP-dependent synthetase and ligase; KEGG: rpb:RPB_3261 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 375310..376905 Pseudoalteromonas atlantica T6c 4173144 YP_659909.1 CDS Patl_0323 NC_008228.1 377376 378887 R KEGG: cch:Cag_0738 VCBS; hypothetical protein complement(377376..378887) Pseudoalteromonas atlantica T6c 4173145 YP_659910.1 CDS Patl_0325 NC_008228.1 380844 381410 D hypothetical protein 380844..381410 Pseudoalteromonas atlantica T6c 4173147 YP_659911.1 CDS Patl_0326 NC_008228.1 381516 381950 R hypothetical protein complement(381516..381950) Pseudoalteromonas atlantica T6c 4173148 YP_659912.1 CDS Patl_0327 NC_008228.1 381964 382518 R TIGRFAM: deoxycytidine triphosphate deaminase; PFAM: deoxyUTP pyrophosphatase; KEGG: mst:Msp_1048 deoxycytidine triphosphate deaminase; deoxycytidine triphosphate deaminase complement(381964..382518) Pseudoalteromonas atlantica T6c 4173149 YP_659913.1 CDS Patl_0328 NC_008228.1 382505 383959 R hypothetical protein complement(382505..383959) Pseudoalteromonas atlantica T6c 4173150 YP_659914.1 CDS Patl_0329 NC_008228.1 383970 384455 R hypothetical protein complement(383970..384455) Pseudoalteromonas atlantica T6c 4173151 YP_659915.1 CDS Patl_0330 NC_008228.1 384766 385071 D hypothetical protein 384766..385071 Pseudoalteromonas atlantica T6c 4173153 YP_659916.1 CDS Patl_0331 NC_008228.1 385210 386595 D PFAM: protein of unknown function DUF839; KEGG: ccr:CC1375 hypothetical protein; hypothetical protein 385210..386595 Pseudoalteromonas atlantica T6c 4173154 YP_659917.1 CDS Patl_0332 NC_008228.1 386770 387990 R PFAM: N-acylglucosamine 2-epimerase; KEGG: xcv:XCV1601 hypothetical protein; N-acylglucosamine 2-epimerase complement(386770..387990) Pseudoalteromonas atlantica T6c 4173155 YP_659918.1 CDS Patl_0333 NC_008228.1 388003 389298 R KEGG: tth:TTC0614 hypothetical protein; hypothetical protein complement(388003..389298) Pseudoalteromonas atlantica T6c 4173156 YP_659919.1 CDS Patl_0334 NC_008228.1 389502 391949 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3961 TonB-dependent receptor; TonB-dependent receptor 389502..391949 Pseudoalteromonas atlantica T6c 4173157 YP_659920.1 CDS Patl_0335 NC_008228.1 392102 393682 D TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: rba:RB7512 putative integral membrane transport protein; SSS family solute/sodium (Na+) symporter 392102..393682 Pseudoalteromonas atlantica T6c 4173158 YP_659921.1 CDS Patl_0336 NC_008228.1 393692 394930 D PFAM: MOFRL; KEGG: pfl:PFL_1698 hydroxypyruvate reductase, putative; hydroxypyruvate reductase 393692..394930 Pseudoalteromonas atlantica T6c 4173159 YP_659922.1 CDS Patl_0337 NC_008228.1 395040 396245 D PFAM: ROK domain containing protein; KEGG: xcb:XC_4142 transcriptional regulator; ROK domain-containing protein 395040..396245 Pseudoalteromonas atlantica T6c 4173160 YP_659923.1 CDS Patl_0338 NC_008228.1 396334 397353 R PFAM: cyclic-AMP phosphodiesterase, class-II; KEGG: vfi:VF1256 3',5'-cyclic-nucleotide phosphodiesterase; cyclic-AMP phosphodiesterase complement(396334..397353) Pseudoalteromonas atlantica T6c 4173161 YP_659924.1 CDS Patl_0339 NC_008228.1 397355 398536 R PFAM: HemY-like; KEGG: vch:VC0117 HemY protein; HemY-like protein complement(397355..398536) Pseudoalteromonas atlantica T6c 4173162 YP_659925.1 CDS Patl_0340 NC_008228.1 398533 399909 R PFAM: protein of unknown function DUF513, hemX; KEGG: ppr:PBPRA3530 hypothetical uroporphyrin-III C-methyltransferase; hypothetical protein complement(398533..399909) Pseudoalteromonas atlantica T6c 4173163 YP_659926.1 CDS Patl_0341 NC_008228.1 399910 400632 R PFAM: Uroporphyrinogen III synthase HEM4; KEGG: vch:VC0119 uroporphyrinogen-III synthase; uroporphyrinogen III synthase HEM4 complement(399910..400632) Pseudoalteromonas atlantica T6c 4173164 YP_659927.1 CDS hemC NC_008228.1 400636 401565 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(400636..401565) Pseudoalteromonas atlantica T6c 4173165 YP_659928.1 CDS Patl_0343 NC_008228.1 401752 402231 R PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_06509 histone acetyltransferase HPA2/related acetyltransferase; N-acetyltransferase GCN5 complement(401752..402231) Pseudoalteromonas atlantica T6c 4173166 YP_659929.1 CDS Patl_0344 NC_008228.1 402259 402738 R PFAM: YHS; KEGG: vvy:VV0794 hypothetical protein; YHS domain-containing protein complement(402259..402738) Pseudoalteromonas atlantica T6c 4173167 YP_659930.1 CDS Patl_0345 NC_008228.1 402912 403583 R PFAM: phospholipase/Carboxylesterase; KEGG: pha:PSHAa0096 hypothetical protein; carboxylesterase complement(402912..403583) Pseudoalteromonas atlantica T6c 4173168 YP_659931.1 CDS Patl_0346 NC_008228.1 403630 403956 R PFAM: Frataxin-like; KEGG: pha:PSHAa0095 iron scavenging protein; frataxin family protein complement(403630..403956) Pseudoalteromonas atlantica T6c 4173169 YP_659932.1 CDS gmk NC_008228.1 404076 404723 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 404076..404723 Pseudoalteromonas atlantica T6c 4173170 YP_659933.1 CDS rpoZ NC_008228.1 404828 405100 D promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 404828..405100 Pseudoalteromonas atlantica T6c 4173171 YP_659934.1 CDS Patl_0349 NC_008228.1 405241 407370 D KEGG: cps:CPS_4973 guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: TGS metal-dependent phosphohydrolase, HD subdomain RelA/SpoT; SMART: Metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 405241..407370 Pseudoalteromonas atlantica T6c 4173172 YP_659935.1 CDS Patl_0350 NC_008228.1 407392 407778 D TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: ilo:IL2379 endoribonuclease L-PSP family protein; putative endoribonuclease L-PSP 407392..407778 Pseudoalteromonas atlantica T6c 4173173 YP_659936.2 CDS Patl_0351 NC_008228.1 407972 408724 D specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 407972..408724 Pseudoalteromonas atlantica T6c 4173174 YP_659937.1 CDS Patl_0352 NC_008228.1 408761 409405 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: son:SO1381 hypothetical protein; redoxin 408761..409405 Pseudoalteromonas atlantica T6c 4173175 YP_659938.1 CDS Patl_0353 NC_008228.1 409608 411683 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 409608..411683 Pseudoalteromonas atlantica T6c 4173176 YP_659939.1 CDS Patl_0354 NC_008228.1 411676 412524 D PFAM: protein of unknown function DUF548; KEGG: ppr:PBPRA3533 conserved hypothetical protein; hypothetical protein 411676..412524 Pseudoalteromonas atlantica T6c 4173177 YP_659940.1 CDS Patl_0355 NC_008228.1 412575 412970 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vpa:VP1864 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 412575..412970 Pseudoalteromonas atlantica T6c 4173178 YP_659941.1 CDS Patl_0356 NC_008228.1 413007 413486 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: vvy:VVA1236 peroxiredoxin; redoxin 413007..413486 Pseudoalteromonas atlantica T6c 4173179 YP_659942.1 CDS Patl_0357 NC_008228.1 413526 415112 R KEGG: gvi:glr0437 unknown protein; hypothetical protein complement(413526..415112) Pseudoalteromonas atlantica T6c 4173950 YP_659943.1 CDS Patl_0358 NC_008228.1 415114 416025 R PFAM: ABC transporter related; SMART: ATPase; KEGG: sru:SRU_0147 ABC transporter ATP-binding protein; ABC transporter-like protein complement(415114..416025) Pseudoalteromonas atlantica T6c 4173951 YP_659944.1 CDS Patl_0359 NC_008228.1 416249 416995 D PFAM: regulatory protein, LuxR Autoinducer-binding; KEGG: nmu:Nmul_A2417 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 416249..416995 Pseudoalteromonas atlantica T6c 4173952 YP_659945.1 CDS Patl_0360 NC_008228.1 416992 417951 R hypothetical protein complement(416992..417951) Pseudoalteromonas atlantica T6c 4173953 YP_659946.1 CDS Patl_0361 NC_008228.1 418168 418761 D PFAM: autoinducer synthesis protein; KEGG: vfi:VFA0924 LuxI, autoinducer synthesis protein; autoinducer synthesis protein 418168..418761 Pseudoalteromonas atlantica T6c 4173954 YP_659947.1 CDS Patl_0362 NC_008228.1 419352 419558 R hypothetical protein complement(419352..419558) Pseudoalteromonas atlantica T6c 4173955 YP_659948.1 CDS Patl_0363 NC_008228.1 419607 419822 R hypothetical protein complement(419607..419822) Pseudoalteromonas atlantica T6c 4173956 YP_659949.1 CDS Patl_0364 NC_008228.1 419849 420064 R hypothetical protein complement(419849..420064) Pseudoalteromonas atlantica T6c 4173957 YP_659950.1 CDS Patl_0365 NC_008228.1 420091 420306 R hypothetical protein complement(420091..420306) Pseudoalteromonas atlantica T6c 4173958 YP_659951.1 CDS Patl_0366 NC_008228.1 420333 420548 R hypothetical protein complement(420333..420548) Pseudoalteromonas atlantica T6c 4173959 YP_659952.1 CDS Patl_0367 NC_008228.1 420575 420790 R hypothetical protein complement(420575..420790) Pseudoalteromonas atlantica T6c 4173960 YP_659953.1 CDS Patl_0368 NC_008228.1 420897 422156 R hypothetical protein complement(420897..422156) Pseudoalteromonas atlantica T6c 4173961 YP_659954.1 CDS Patl_0369 NC_008228.1 422332 423621 D hypothetical protein 422332..423621 Pseudoalteromonas atlantica T6c 4173962 YP_659955.1 CDS Patl_0370 NC_008228.1 423632 424531 D KEGG: bcl:ABC3232 hypothetical protein; hypothetical protein 423632..424531 Pseudoalteromonas atlantica T6c 4173963 YP_659956.1 CDS Patl_0371 NC_008228.1 424816 425034 D KEGG: pha:PSHAa1766 hypothetical protein; hypothetical protein 424816..425034 Pseudoalteromonas atlantica T6c 4173964 YP_659957.1 CDS Patl_0372 NC_008228.1 425166 425966 D KEGG: hch:HCH_05423 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; hypothetical protein 425166..425966 Pseudoalteromonas atlantica T6c 4173965 YP_659958.1 CDS Patl_0373 NC_008228.1 426068 426940 D putative metalloprotease; heat shock protein HtpX 426068..426940 Pseudoalteromonas atlantica T6c 4173966 YP_659959.1 CDS Patl_0374 NC_008228.1 426937 427623 R PFAM: putative cyclase; KEGG: bha:BH0378 hypothetical protein; putative cyclase complement(426937..427623) Pseudoalteromonas atlantica T6c 4173967 YP_659960.1 CDS Patl_0375 NC_008228.1 427750 428931 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like HI0933-like protein FAD dependent oxidoreductase FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: vfi:VF0086 NAD(FAD)-utilizing dehydrogenases; hypothetical protein 427750..428931 Pseudoalteromonas atlantica T6c 4173968 YP_659961.1 CDS Patl_0377 NC_008228.1 429709 432060 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_2088 TonB-dependent receptor; TonB-dependent receptor 429709..432060 Pseudoalteromonas atlantica T6c 4173467 YP_659962.1 CDS Patl_0378 NC_008228.1 432193 433590 D PFAM: oxidoreductase FAD/NAD(P)-binding Oxidoreductase FAD-binding region FAD-binding 8 Ferric reductase-like transmembrane component-like; KEGG: ade:Adeh_0299 oxidoreductase FAD/NAD(P)-binding protein; oxidoreductase FAD/NAD(P)-binding protein 432193..433590 Pseudoalteromonas atlantica T6c 4173468 YP_659963.1 CDS Patl_0379 NC_008228.1 433657 435582 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like FAD dependent oxidoreductase FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: afu:AF1463 fumarate reductase flavoprotein subunit; twin-arginine translocation pathway signal protein 433657..435582 Pseudoalteromonas atlantica T6c 4173469 YP_659964.1 CDS Patl_0380 NC_008228.1 435638 435853 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: afu:AF1461 iron-sulfur cluster binding protein, putative; 4Fe-4S ferredoxin 435638..435853 Pseudoalteromonas atlantica T6c 4173470 YP_659965.1 CDS Patl_0381 NC_008228.1 435956 436861 D PFAM: regulatory proteins, IclR; KEGG: chy:CHY_1273 transcriptional regulator, IclR family; IclR family transcriptional regulator 435956..436861 Pseudoalteromonas atlantica T6c 4173471 YP_659966.1 CDS Patl_0382 NC_008228.1 436875 438056 D KEGG: bja:bll6424 hypothetical protein; hypothetical protein 436875..438056 Pseudoalteromonas atlantica T6c 4173472 YP_659967.1 CDS Patl_0383 NC_008228.1 438300 439991 D PFAM: sulfatase; KEGG: pfl:PFL_0205 arylsulfatase; sulfatase 438300..439991 Pseudoalteromonas atlantica T6c 4173473 YP_659968.1 CDS Patl_0384 NC_008228.1 440605 441546 D KEGG: hch:HCH_06743 hypothetical protein; hypothetical protein 440605..441546 Pseudoalteromonas atlantica T6c 4173474 YP_659969.1 CDS Patl_0385 NC_008228.1 441601 442029 D PFAM: thioesterase superfamily; KEGG: sil:SPO0440 thioesterase family protein; thioesterase superfamily protein 441601..442029 Pseudoalteromonas atlantica T6c 4173475 YP_659970.1 CDS Patl_0386 NC_008228.1 442111 442671 R KEGG: ilo:IL1417 outer membrane protein, porin family; porin family outer membrane protein complement(442111..442671) Pseudoalteromonas atlantica T6c 4173476 YP_659971.1 CDS Patl_0387 NC_008228.1 442956 443183 D hypothetical protein 442956..443183 Pseudoalteromonas atlantica T6c 4173477 YP_659972.1 CDS Patl_0388 NC_008228.1 443295 444002 R KEGG: pha:PSHAa2209 hypothetical protein; hypothetical protein complement(443295..444002) Pseudoalteromonas atlantica T6c 4173478 YP_659973.1 CDS Patl_0389 NC_008228.1 444125 444964 D PFAM: Sterol desaturase; KEGG: par:Psyc_1393 possible sterol desaturase; sterol desaturase 444125..444964 Pseudoalteromonas atlantica T6c 4173479 YP_659974.1 CDS Patl_0390 NC_008228.1 444971 445591 R PFAM: CDP-alcohol phosphatidyltransferase; KEGG: ilo:IL1156 phosphatidylglycerophosphate synthase; CDP-alcohol phosphatidyltransferase complement(444971..445591) Pseudoalteromonas atlantica T6c 4173480 YP_659975.1 CDS Patl_0391 NC_008228.1 445651 446331 R PFAM: ABC transporter related; SMART: ATPase; KEGG: vvu:VV12861 ABC-type uncharacterized transport system, ATPase component; ABC transporter-like protein complement(445651..446331) Pseudoalteromonas atlantica T6c 4173481 YP_659976.1 CDS Patl_0392 NC_008228.1 446315 447964 R KEGG: vch:VC1665 ABC transporter, permease protein, putative; ABC transporter permease complement(446315..447964) Pseudoalteromonas atlantica T6c 4173482 YP_659977.1 CDS Patl_0393 NC_008228.1 447940 449061 R KEGG: vch:VC1664 ABC transporter, periplasmic substrate-binding protein, putative; putative ABC transporter solute-binding protein complement(447940..449061) Pseudoalteromonas atlantica T6c 4173483 YP_659978.1 CDS Patl_0394 NC_008228.1 449144 450022 R KEGG: ilo:IL1167 hypothetical protein; hypothetical protein complement(449144..450022) Pseudoalteromonas atlantica T6c 4173484 YP_659979.1 CDS Patl_0395 NC_008228.1 450118 452259 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase glucose-inhibited division protein A pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ilo:IL1160 mercuric reductase, membrane-associated; pyridine nucleotide-disulfide oxidoreductase dimerisation region complement(450118..452259) Pseudoalteromonas atlantica T6c 4173485 YP_659980.1 CDS Patl_0396 NC_008228.1 452281 454680 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAb0232 putative TonB dependent receptor; TonB-dependent receptor complement(452281..454680) Pseudoalteromonas atlantica T6c 4173070 YP_659981.1 CDS Patl_0397 NC_008228.1 455020 456267 D PFAM: major facilitator superfamily MFS_1; KEGG: yps:YPTB0668 MFS family transporter, sugar efflux pump; major facilitator superfamily transporter 455020..456267 Pseudoalteromonas atlantica T6c 4173071 YP_659982.1 CDS Patl_0398 NC_008228.1 456257 457240 R KEGG: son:SO1695 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein; SMART: PAS; PAS/PAC sensor-containing diguanylate cyclase complement(456257..457240) Pseudoalteromonas atlantica T6c 4173072 YP_659983.1 CDS Patl_0399 NC_008228.1 465515 467716 D KEGG: pfl:PFL_1302 hypothetical protein; hypothetical protein 465515..467716 Pseudoalteromonas atlantica T6c 4173078 YP_659984.1 CDS Patl_0400 NC_008228.1 467916 468995 R PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: vch:VC1061 cysteine synthase/cystathionine beta-synthase family protein; pyridoxal-5'-phosphate-dependent enzyme subunit beta complement(467916..468995) Pseudoalteromonas atlantica T6c 4173079 YP_659985.1 CDS Patl_0401 NC_008228.1 469395 469790 R hypothetical protein complement(469395..469790) Pseudoalteromonas atlantica T6c 4173080 YP_659986.1 CDS Patl_0402 NC_008228.1 469824 473198 R PFAM: transcriptional regulatory protein-like; KEGG: son:SO1699 transcriptional regulator; transcriptional regulator CadC complement(469824..473198) Pseudoalteromonas atlantica T6c 4173081 YP_659987.1 CDS Patl_0403 NC_008228.1 473437 476646 R PFAM: acriflavin resistance protein; KEGG: pha:PSHAa2957 multidrug resistance protein, AcrB/AcrD/AcrF; acriflavin resistance protein complement(473437..476646) Pseudoalteromonas atlantica T6c 4173082 YP_659988.1 CDS Patl_0404 NC_008228.1 476655 477818 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: pha:PSHAa2958 multidrug resistance protein; RND family efflux transporter MFP subunit complement(476655..477818) Pseudoalteromonas atlantica T6c 4173083 YP_659989.1 CDS Patl_0405 NC_008228.1 478069 479721 D PFAM: peptidase M28; KEGG: pha:PSHAa1017 hypothetical protein; peptidase M28 478069..479721 Pseudoalteromonas atlantica T6c 4173794 YP_659990.1 CDS Patl_0406 NC_008228.1 479793 480335 D KEGG: eli:ELI_10435 hypothetical protein; hypothetical protein 479793..480335 Pseudoalteromonas atlantica T6c 4173795 YP_659991.1 CDS Patl_0407 NC_008228.1 480642 480914 D TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF167; KEGG: vfi:VF0427 hypothetical protein; hypothetical protein 480642..480914 Pseudoalteromonas atlantica T6c 4173796 YP_659992.1 CDS Patl_0408 NC_008228.1 481037 481906 D KEGG: lpp:lpp1627 hypothetical protein; hypothetical protein 481037..481906 Pseudoalteromonas atlantica T6c 4173797 YP_659993.1 CDS Patl_0409 NC_008228.1 481967 482434 R PFAM: regulatory proteins, AsnC/Lrp; KEGG: ccr:CC2887 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(481967..482434) Pseudoalteromonas atlantica T6c 4173798 YP_659994.1 CDS Patl_0410 NC_008228.1 482576 483394 D KEGG: plu:plu1434 hypothetical protein; tryptophan 2 3-dioxygenase-like protein 482576..483394 Pseudoalteromonas atlantica T6c 4173799 YP_659995.1 CDS Patl_0411 NC_008228.1 483463 484536 D PFAM: aminotransferase, class V; KEGG: pha:PSHAa0055 pyridoxal phosphate dependent enzyme; class V aminotransferase 483463..484536 Pseudoalteromonas atlantica T6c 4173800 YP_659996.1 CDS Patl_0412 NC_008228.1 484604 485233 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: pha:PSHAb0059 putative hydrolase/phosphatase protein; HAD family hydrolase complement(484604..485233) Pseudoalteromonas atlantica T6c 4173801 YP_659997.1 CDS Patl_0413 NC_008228.1 485568 485984 D KEGG: pha:PSHAb0233 hypothetical protein; hypothetical protein 485568..485984 Pseudoalteromonas atlantica T6c 4173802 YP_659998.1 CDS Patl_0414 NC_008228.1 486270 488621 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ilo:IL2177 outer membrane protein; TonB-dependent receptor 486270..488621 Pseudoalteromonas atlantica T6c 4173803 YP_659999.1 CDS Patl_0415 NC_008228.1 488828 489574 D PFAM: oxidoreductase FAD/NAD(P)-binding Oxidoreductase FAD-binding region FAD-binding 9, siderophore-interacting; KEGG: ppr:PBPRA0238 hypothetical ferredoxin-NADP reductase; oxidoreductase FAD/NAD(P)-binding protein 488828..489574 Pseudoalteromonas atlantica T6c 4173804 YP_660000.1 CDS Patl_0416 NC_008228.1 489774 490454 D KEGG: tcx:Tcr_1008 hypothetical protein; hypothetical protein 489774..490454 Pseudoalteromonas atlantica T6c 4173805 YP_660001.1 CDS Patl_0417 NC_008228.1 490492 491880 R TIGRFAM: uroporphyrin-III C-methyltransferase siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: nmu:Nmul_A2313 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase complement(490492..491880) Pseudoalteromonas atlantica T6c 4173806 YP_660002.1 CDS Patl_0418 NC_008228.1 492124 493863 R PFAM: helicase-like DbpA, RNA-binding DEAD/DEAH box helicase-like; KEGG: tcx:Tcr_2009 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase complement(492124..493863) Pseudoalteromonas atlantica T6c 4173807 YP_660003.1 CDS Patl_0419 NC_008228.1 494407 497160 D PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: cps:CPS_0309 TPR domain protein; hypothetical protein 494407..497160 Pseudoalteromonas atlantica T6c 4173808 YP_660004.1 CDS Patl_0420 NC_008228.1 497258 497686 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: cps:CPS_2236 thioredoxin; thioredoxin complement(497258..497686) Pseudoalteromonas atlantica T6c 4173809 YP_660005.1 CDS Patl_0421 NC_008228.1 497687 498535 R PFAM: Ion transport protein; KEGG: ilo:IL1436 Kef-type K+ transport system, NAD-binding component; Ion transport protein complement(497687..498535) Pseudoalteromonas atlantica T6c 4173810 YP_660006.1 CDS Patl_0422 NC_008228.1 498909 499550 D PFAM: Haem oxygenase; KEGG: dra:DRA0052m heme oxygenase; heme oxygenase 498909..499550 Pseudoalteromonas atlantica T6c 4173811 YP_660007.1 CDS Patl_0423 NC_008228.1 499547 501946 D PFAM: GAF ATP-binding region, ATPase-like histidine kinase A-like Phytochrome, central region PAS fold-2; KEGG: ana:all2899 phytochrome-like protein, two-component sensor; multi-sensor signal transduction histidine kinase 499547..501946 Pseudoalteromonas atlantica T6c 4173812 YP_660008.1 CDS Patl_0424 NC_008228.1 502155 502607 D PFAM: response regulator receiver; KEGG: pha:PSHAa2395 two-component response regulator; response regulator receiver protein 502155..502607 Pseudoalteromonas atlantica T6c 4173813 YP_660009.1 CDS Patl_0425 NC_008228.1 502924 504084 D PFAM: iron-containing alcohol dehydrogenase; KEGG: atc:AGR_pAT_199 hypothetical protein; iron-containing alcohol dehydrogenase 502924..504084 Pseudoalteromonas atlantica T6c 4173716 YP_660010.1 CDS Patl_0426 NC_008228.1 504223 504690 D PFAM: thioesterase superfamily; KEGG: pfl:PFL_0291 thioesterase family protein domain protein; thioesterase superfamily protein 504223..504690 Pseudoalteromonas atlantica T6c 4173717 YP_660011.1 CDS Patl_0427 NC_008228.1 504787 505974 R PFAM: hydroxymethylglutaryl-coenzyme A reductase; KEGG: nph:NP0368A hydroxymethylglutaryl-CoA reductase (NADPH) 1; hydroxymethylglutaryl-CoA reductase (NADPH) complement(504787..505974) Pseudoalteromonas atlantica T6c 4173718 YP_660012.1 CDS Patl_0428 NC_008228.1 506131 506454 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: aci:ACIAD1498 7-Fe ferredoxin; 4Fe-4S ferredoxin complement(506131..506454) Pseudoalteromonas atlantica T6c 4173719 YP_660013.1 CDS Patl_0429 NC_008228.1 506675 508288 D PFAM: FAD dependent oxidoreductase FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pha:PSHAb0412 putative uncharacterized dehydrogenase; FAD dependent oxidoreductase 506675..508288 Pseudoalteromonas atlantica T6c 4173720 YP_660014.1 CDS Patl_0430 NC_008228.1 508359 509669 R TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: son:SO3904 outer membrane protein TolC; TolC family type I secretion outer membrane protein complement(508359..509669) Pseudoalteromonas atlantica T6c 4173721 YP_660015.1 CDS Patl_0431 NC_008228.1 509893 510513 D KEGG: vfi:VF2232 ADP-ribose pyrophosphatase; TIGRFAM: Nucleoside diphosphate pyrophosphatase; PFAM: NUDIX hydrolase; nucleoside diphosphate pyrophosphatase 509893..510513 Pseudoalteromonas atlantica T6c 4173722 YP_660016.1 CDS Patl_0432 NC_008228.1 510497 510952 D PFAM: protein of unknown function DUF1249; KEGG: yps:YPTB3398 hypothetical protein; hypothetical protein 510497..510952 Pseudoalteromonas atlantica T6c 4173723 YP_660017.1 CDS Patl_0433 NC_008228.1 510968 511720 D PFAM: metallophosphoesterase; KEGG: pfo:Pfl_0497 metallophosphoesterase; metallophosphoesterase 510968..511720 Pseudoalteromonas atlantica T6c 4173724 YP_660018.1 CDS Patl_0434 NC_008228.1 511731 512324 D PFAM: protein of unknown function UPF0227; KEGG: vpa:VP0429 hypothetical protein; hypothetical protein 511731..512324 Pseudoalteromonas atlantica T6c 4173725 YP_660019.1 CDS Patl_0435 NC_008228.1 512409 514298 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 512409..514298 Pseudoalteromonas atlantica T6c 4173726 YP_660020.1 CDS Patl_0436 NC_008228.1 514351 515640 D KEGG: tbd:Tbd_0773 hypothetical protein; hypothetical protein 514351..515640 Pseudoalteromonas atlantica T6c 4173727 YP_660021.1 CDS Patl_0437 NC_008228.1 515663 516004 R PFAM: small multidrug resistance protein; KEGG: reu:Reut_A2364 small multidrug resistance protein; small multidrug resistance protein complement(515663..516004) Pseudoalteromonas atlantica T6c 4173728 YP_660022.1 CDS Patl_0438 NC_008228.1 516023 516334 R KEGG: pha:PSHAa0471 hypothetical protein; hypothetical protein complement(516023..516334) Pseudoalteromonas atlantica T6c 4173729 YP_660023.1 CDS Patl_0439 NC_008228.1 516387 516638 D hypothetical protein 516387..516638 Pseudoalteromonas atlantica T6c 4173730 YP_660024.1 CDS Patl_0440 NC_008228.1 516639 517664 R TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM; KEGG: vch:VC2661 hypothetical protein; lysine 2,3-aminomutase YodO family protein complement(516639..517664) Pseudoalteromonas atlantica T6c 4173731 YP_660025.1 CDS Patl_0441 NC_008228.1 517702 518271 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 517702..518271 Pseudoalteromonas atlantica T6c 4173732 YP_660026.1 CDS Patl_0442 NC_008228.1 518341 519324 D TIGRFAM: lysyl-tRNA synthetase-related protein GenX; PFAM: tRNA synthetase, class II (D, K and N); KEGG: spt:SPA4161 lysyl-tRNA synthetase; lysyl-tRNA synthetase-like protein GenX 518341..519324 Pseudoalteromonas atlantica T6c 4173733 YP_660027.1 CDS Patl_0443 NC_008228.1 519409 520545 D TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: ilo:IL2366 signaling protein with a acyltransferase and GGDEF domains; diguanylate cyclase 519409..520545 Pseudoalteromonas atlantica T6c 4173734 YP_660028.1 CDS Patl_0444 NC_008228.1 520668 521117 D KEGG: dar:Daro_0236 hypothetical protein; hypothetical protein 520668..521117 Pseudoalteromonas atlantica T6c 4173217 YP_660029.1 CDS Patl_0445 NC_008228.1 521125 521655 D PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_04390 acetyltransferase, including N-acetylases of ribosomal protein; N-acetyltransferase GCN5 521125..521655 Pseudoalteromonas atlantica T6c 4173218 YP_660030.1 CDS Patl_0446 NC_008228.1 521641 522237 R PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: ilo:IL1866 peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(521641..522237) Pseudoalteromonas atlantica T6c 4173219 YP_660031.1 CDS Patl_0447 NC_008228.1 522251 523405 R PFAM: methyltransferase small Methyltransferase type 11; KEGG: pha:PSHAa2245 ribosomal RNA small subunit methyltransferase D; rRNA (guanine-N(2)-)-methyltransferase complement(522251..523405) Pseudoalteromonas atlantica T6c 4173220 YP_660032.1 CDS Patl_0448 NC_008228.1 523431 524063 D PFAM: 2OG-Fe(II) oxygenase; KEGG: vvy:VVA0455 alkylated DNA repair protein; 2OG-Fe(II) oxygenase 523431..524063 Pseudoalteromonas atlantica T6c 4173221 YP_660033.1 CDS Patl_0449 NC_008228.1 524109 524423 D PFAM: BolA-like protein; KEGG: ppr:PBPRA0820 putative cell division protein BolA; BolA-like protein 524109..524423 Pseudoalteromonas atlantica T6c 4173222 YP_660034.1 CDS Patl_0450 NC_008228.1 524521 524691 D PFAM: protein of unknown function UPF0057; KEGG: dps:DP1039 hypothetical protein; hypothetical protein 524521..524691 Pseudoalteromonas atlantica T6c 4173223 YP_660035.1 CDS Patl_0451 NC_008228.1 524787 525968 D enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 524787..525968 Pseudoalteromonas atlantica T6c 4173224 YP_660036.1 CDS Patl_0452 NC_008228.1 526413 527786 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 526413..527786 Pseudoalteromonas atlantica T6c 4173225 YP_660037.1 CDS Patl_0453 NC_008228.1 527790 529001 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 527790..529001 Pseudoalteromonas atlantica T6c 4173226 YP_660038.1 CDS Patl_0454 NC_008228.1 528991 529752 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 528991..529752 Pseudoalteromonas atlantica T6c 4173227 YP_660039.1 CDS Patl_0455 NC_008228.1 529764 530396 D Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 529764..530396 Pseudoalteromonas atlantica T6c 4173228 YP_660040.1 CDS Patl_0456 NC_008228.1 530401 531009 D Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 530401..531009 Pseudoalteromonas atlantica T6c 4173229 YP_660041.1 CDS Patl_0457 NC_008228.1 531034 532260 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 531034..532260 Pseudoalteromonas atlantica T6c 4173230 YP_660042.1 CDS Patl_0458 NC_008228.1 532348 533373 D PFAM: ApbE-like lipoprotein; KEGG: vch:VC2289 thiamin biosynthesis lipoprotein ApbE; ApbE-like lipoprotein 532348..533373 Pseudoalteromonas atlantica T6c 4173231 YP_660043.1 CDS Patl_0459 NC_008228.1 533408 533641 D PFAM: protein of unknown function DUF539; KEGG: ilo:IL1043 uncharacterized conserved membrane or secreted protein; hypothetical protein 533408..533641 Pseudoalteromonas atlantica T6c 4173232 YP_660044.1 CDS Patl_0460 NC_008228.1 533737 534807 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 533737..534807 Pseudoalteromonas atlantica T6c 4173233 YP_660045.1 CDS Patl_0461 NC_008228.1 534913 535146 D PFAM: protein of unknown function DUF1653; KEGG: psp:PSPPH_3208 hypothetical protein; hypothetical protein 534913..535146 Pseudoalteromonas atlantica T6c 4173234 YP_660046.1 CDS Patl_0462 NC_008228.1 535225 536103 D PFAM: beta-lactamase-like; KEGG: ilo:IL0617 Zn-dependent hydrolase, glyoxylase family; beta-lactamase-like protein 535225..536103 Pseudoalteromonas atlantica T6c 4173235 YP_660047.1 CDS Patl_0463 NC_008228.1 536200 537858 R PFAM: Amidohydrolase 3; KEGG: ilo:IL1207 predicted metal-dependent amidohydrolase with the TIM-barrel fold; amidohydrolase 3 complement(536200..537858) Pseudoalteromonas atlantica T6c 4173236 YP_660048.1 CDS Patl_0464 NC_008228.1 538040 540127 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(538040..540127) Pseudoalteromonas atlantica T6c 4171807 YP_660049.1 CDS Patl_0465 NC_008228.1 540401 541423 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: son:SO2197 GGDEF family protein; diguanylate cyclase complement(540401..541423) Pseudoalteromonas atlantica T6c 4171808 YP_660050.1 CDS Patl_0466 NC_008228.1 541570 544911 R PFAM: amidohydrolase WD40-like beta Propeller; KEGG: pha:PSHAa1171 hypothetical protein; amidohydrolase complement(541570..544911) Pseudoalteromonas atlantica T6c 4171809 YP_660051.1 CDS Patl_0467 NC_008228.1 545066 547276 R PFAM: type II secretion system protein E GAF; SMART: ATPase; KEGG: neu:NE2290 bacterial type II secretion system protein E:GAF domain; putative GAF sensor protein complement(545066..547276) Pseudoalteromonas atlantica T6c 4171810 YP_660052.1 CDS rpsJ NC_008228.1 547635 547946 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 547635..547946 Pseudoalteromonas atlantica T6c 4171811 YP_660053.1 CDS rplC NC_008228.1 547965 548603 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 547965..548603 Pseudoalteromonas atlantica T6c 4171812 YP_660054.1 CDS rplD NC_008228.1 548622 549227 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 548622..549227 Pseudoalteromonas atlantica T6c 4171813 YP_660055.1 CDS rplW NC_008228.1 549224 549526 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 549224..549526 Pseudoalteromonas atlantica T6c 4171814 YP_660056.1 CDS rplB NC_008228.1 549541 550365 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 549541..550365 Pseudoalteromonas atlantica T6c 4171815 YP_660057.1 CDS Patl_0473 NC_008228.1 550381 550656 D TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: vpa:VP0261 ribosomal protein S19; 30S ribosomal protein S19 550381..550656 Pseudoalteromonas atlantica T6c 4171816 YP_660058.1 CDS rplV NC_008228.1 550667 550999 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 550667..550999 Pseudoalteromonas atlantica T6c 4171817 YP_660059.1 CDS rpsC NC_008228.1 551009 551707 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 551009..551707 Pseudoalteromonas atlantica T6c 4171818 YP_660060.1 CDS rplP NC_008228.1 551710 552120 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 551710..552120 Pseudoalteromonas atlantica T6c 4171819 YP_660061.1 CDS Patl_0477 NC_008228.1 552120 552311 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 552120..552311 Pseudoalteromonas atlantica T6c 4171820 YP_660062.1 CDS rpsQ NC_008228.1 552311 552562 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 552311..552562 Pseudoalteromonas atlantica T6c 4171821 YP_660063.1 CDS Patl_0479 NC_008228.1 552665 554080 R PFAM: peptidase S41; KEGG: pha:PSHAa0289 hypothetical protein; peptidase S41 complement(552665..554080) Pseudoalteromonas atlantica T6c 4171822 YP_660064.1 CDS Patl_0480 NC_008228.1 554597 555778 D TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: rru:Rru_A3374 putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain; diguanylate cyclase 554597..555778 Pseudoalteromonas atlantica T6c 4171823 YP_660065.1 CDS Patl_0481 NC_008228.1 555911 557407 D PFAM: Catalase-like; KEGG: rru:Rru_A2489 catalase; catalase 555911..557407 Pseudoalteromonas atlantica T6c 4171824 YP_660066.1 CDS Patl_0482 NC_008228.1 557538 558083 R PFAM: Paraquat-inducible protein A; KEGG: son:SO4710 hypothetical protein; paraquat-inducible protein A complement(557538..558083) Pseudoalteromonas atlantica T6c 4171825 YP_660067.1 CDS Patl_0483 NC_008228.1 558138 558566 R KEGG: xac:XAC3767 hypothetical protein; hypothetical protein complement(558138..558566) Pseudoalteromonas atlantica T6c 4172710 YP_660068.1 CDS Patl_0484 NC_008228.1 558568 559836 R KEGG: vch:VC2456 hypothetical protein; hypothetical protein complement(558568..559836) Pseudoalteromonas atlantica T6c 4172711 YP_660069.1 CDS Patl_0485 NC_008228.1 560064 560690 D hypothetical protein 560064..560690 Pseudoalteromonas atlantica T6c 4172712 YP_660070.1 CDS Patl_0486 NC_008228.1 560733 561587 R TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase-like amino acid-binding ACT; KEGG: pfl:PFL_4786 formyltetrahydrofolate deformylase; formyltetrahydrofolate deformylase complement(560733..561587) Pseudoalteromonas atlantica T6c 4172713 YP_660071.1 CDS Patl_0487 NC_008228.1 561691 562221 R TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: eca:ECA3315 2'-5' RNA ligase; 2'-5' RNA ligase complement(561691..562221) Pseudoalteromonas atlantica T6c 4172714 YP_660072.1 CDS Patl_0488 NC_008228.1 562332 564803 D TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase-like DEAD/DEAH box helicase-like Helicase ATP-dependent-like; KEGG: hch:HCH_05855 ATP-dependent helicase HrpB; ATP-dependent helicase HrpB 562332..564803 Pseudoalteromonas atlantica T6c 4172715 YP_660073.1 CDS Patl_0489 NC_008228.1 564933 567278 D KEGG: cps:CPS_4301 penicillin-binding protein; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase, family 51 penicillin-binding protein, transpeptidase; penicillin-binding protein 1B 564933..567278 Pseudoalteromonas atlantica T6c 4172716 YP_660074.1 CDS Patl_0490 NC_008228.1 567295 568161 R KEGG: sma:SAV4404 hypothetical protein; hypothetical protein complement(567295..568161) Pseudoalteromonas atlantica T6c 4172717 YP_660075.1 CDS Patl_0491 NC_008228.1 568597 568935 D PFAM: nitrogen regulatory protein P-II; KEGG: vvy:VV2748 nitrogen regulatory protein PII; nitrogen regulatory protein P-II 568597..568935 Pseudoalteromonas atlantica T6c 4172718 YP_660076.1 CDS Patl_0492 NC_008228.1 568956 570224 D PFAM: Rh-like protein/ammonium transporter; KEGG: cps:CPS_0642 putative ammonium transporter; Rh-like protein/ammonium transporter 568956..570224 Pseudoalteromonas atlantica T6c 4172719 YP_660077.1 CDS Patl_0493 NC_008228.1 570525 571445 D TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: cps:CPS_4479 putative melanin biosynthesis protein TyrA; Dyp-type peroxidase family protein 570525..571445 Pseudoalteromonas atlantica T6c 4172720 YP_660078.1 CDS Patl_0494 NC_008228.1 571808 572902 R PFAM: adenylyl cyclase class-3/4/guanylyl cyclase Tetratricopeptide TPR_2; KEGG: lic:LIC20094 adenylate/guanylate cyclase; adenylate/guanylate cyclase complement(571808..572902) Pseudoalteromonas atlantica T6c 4172721 YP_660079.1 CDS Patl_0495 NC_008228.1 572947 574242 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(572947..574242) Pseudoalteromonas atlantica T6c 4172722 YP_660080.1 CDS Patl_0496 NC_008228.1 574297 575301 R Catalyzes the conversion of carbamoyl phosphate and l-aspartate to yield orthophosphate and n-carbamoyl-l-aspartate; aspartate carbamoyltransferase complement(574297..575301) Pseudoalteromonas atlantica T6c 4172723 YP_660081.1 CDS Patl_0498 NC_008228.1 576022 576738 R PFAM: lipolytic enzyme, G-D-S-L; KEGG: bur:Bcep18194_A3328 hypothetical protein; G-D-S-L lipolytic protein complement(576022..576738) Pseudoalteromonas atlantica T6c 4172725 YP_660082.1 CDS Patl_0499 NC_008228.1 576959 578020 R PFAM: peptidase M12A, astacin peptidase M10A and M12B, matrixin and adamalysin; SMART: Peptidase, metallopeptidases; KEGG: sco:SCO6992 regulatory protein; peptidase M12A, astacin complement(576959..578020) Pseudoalteromonas atlantica T6c 4172726 YP_660083.1 CDS Patl_0500 NC_008228.1 578325 578777 R PFAM: regulatory proteins, AsnC/Lrp; KEGG: sil:SPO3612 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(578325..578777) Pseudoalteromonas atlantica T6c 4172727 YP_660084.1 CDS Patl_0501 NC_008228.1 578895 579488 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sil:SPO3613 transporter, LysE family; lysine exporter protein LysE/YggA 578895..579488 Pseudoalteromonas atlantica T6c 4172728 YP_660085.1 CDS Patl_0502 NC_008228.1 579605 580024 R PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: cvi:CV0705 probable FkbP-type peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase complement(579605..580024) Pseudoalteromonas atlantica T6c 4172729 YP_660086.1 CDS Patl_0503 NC_008228.1 580126 580581 R KEGG: nar:Saro_0460 hypothetical protein; hypothetical protein complement(580126..580581) Pseudoalteromonas atlantica T6c 4173447 YP_660087.1 CDS Patl_0504 NC_008228.1 580890 581420 R hypothetical protein complement(580890..581420) Pseudoalteromonas atlantica T6c 4173448 YP_660088.1 CDS Patl_0505 NC_008228.1 581408 584083 R KEGG: hch:HCH_04317 PPE-repeat protein; PPE repeat-containing protein complement(581408..584083) Pseudoalteromonas atlantica T6c 4173449 YP_660089.1 CDS Patl_0506 NC_008228.1 584541 585221 D KEGG: son:SO1658 hypothetical protein; hypothetical protein 584541..585221 Pseudoalteromonas atlantica T6c 4173450 YP_660090.1 CDS Patl_0507 NC_008228.1 585269 588406 R PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt Diverse 7TM receptor, transmembrane region; KEGG: son:SO3457 sensor histidine kinase/response regulator; multi-sensor hybrid histidine kinase complement(585269..588406) Pseudoalteromonas atlantica T6c 4173451 YP_660091.1 CDS Patl_0508 NC_008228.1 588566 589681 D KEGG: pha:PSHAa2586 L-sorbosone dehydrogenase (SNDH); L-sorbosone dehydrogenase (SNDH) 588566..589681 Pseudoalteromonas atlantica T6c 4173452 YP_660092.1 CDS Patl_0509 NC_008228.1 589764 592076 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 589764..592076 Pseudoalteromonas atlantica T6c 4173453 YP_660093.1 CDS Patl_0510 NC_008228.1 592139 593803 D PFAM: Carboxylesterase, type B; KEGG: sma:SAV433 putative carboxylesterase; carboxylesterase 592139..593803 Pseudoalteromonas atlantica T6c 4173454 YP_660094.1 CDS Patl_0511 NC_008228.1 593812 594930 D PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: pha:PSHAa0177 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase 593812..594930 Pseudoalteromonas atlantica T6c 4173455 YP_660095.1 CDS Patl_0512 NC_008228.1 594948 595445 R PFAM: regulatory proteins, AsnC/Lrp; KEGG: cps:CPS_3819 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(594948..595445) Pseudoalteromonas atlantica T6c 4173456 YP_660096.1 CDS Patl_0513 NC_008228.1 595672 596991 R PFAM: peptidase M23B Opacity-associated protein A Opacity-associated protein A-like; KEGG: ilo:IL2237 peptidase, M23/M37 family; peptidase M23B complement(595672..596991) Pseudoalteromonas atlantica T6c 4173457 YP_660097.1 CDS Patl_0514 NC_008228.1 597181 598380 D TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; KEGG: cps:CPS_4727 tyrosyl-tRNA synthetase; tyrosyl-tRNA synthetase 597181..598380 Pseudoalteromonas atlantica T6c 4173458 YP_660098.1 CDS Patl_0515 NC_008228.1 598424 598840 R KEGG: son:SO1320 hypothetical protein; hypothetical protein complement(598424..598840) Pseudoalteromonas atlantica T6c 4173459 YP_660099.1 CDS Patl_0516 NC_008228.1 598922 599371 R hypothetical protein complement(598922..599371) Pseudoalteromonas atlantica T6c 4173460 YP_660100.1 CDS Patl_0517 NC_008228.1 599546 600442 R PFAM: cobalamin biosynthesis protein CbiB; KEGG: cps:CPS_4742 CobD/CbiB family protein; cobalamin biosynthesis protein CbiB complement(599546..600442) Pseudoalteromonas atlantica T6c 4173461 YP_660101.1 CDS Patl_0518 NC_008228.1 600524 601231 R PFAM: purine and other phosphorylases, family 1; KEGG: vpa:VP0479 MTA/SAH nucleosidase; adenosylhomocysteine nucleosidase complement(600524..601231) Pseudoalteromonas atlantica T6c 4173462 YP_660102.1 CDS Patl_0519 NC_008228.1 601477 602643 R KEGG: pha:PSHAa0696 hypothetical protein; hypothetical protein complement(601477..602643) Pseudoalteromonas atlantica T6c 4173463 YP_660103.1 CDS Patl_0520 NC_008228.1 602825 604510 R PFAM: histidine kinase, HAMP region chemotaxis sensory transducer Cache, type 2; KEGG: vpa:VPA0024 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(602825..604510) Pseudoalteromonas atlantica T6c 4173464 YP_660104.1 CDS Patl_0521 NC_008228.1 604827 606767 D TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: pha:PSHAa0698 acetyl-coenzyme A synthetase (acetate--CoA ligase) (acyl-activating enzyme); acetate--CoA ligase 604827..606767 Pseudoalteromonas atlantica T6c 4173465 YP_660105.1 CDS Patl_0522 NC_008228.1 606787 607446 D PFAM: regulatory protein, LuxR response regulator receiver; KEGG: pha:PSHAa0699 regulator in two-component regulatory system ; LuxR; two component LuxR family transcriptional regulator 606787..607446 Pseudoalteromonas atlantica T6c 4173506 YP_660106.1 CDS Patl_0523 NC_008228.1 607394 610831 R TIGRFAM: PAS sensor protein; PFAM: Na+/solute symporter response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: pha:PSHAa0585 sensory box histidine kinase/response regulator; multi-sensor hybrid histidine kinase complement(607394..610831) Pseudoalteromonas atlantica T6c 4173507 YP_660107.1 CDS Patl_0524 NC_008228.1 611001 611279 D KEGG: pha:PSHAa0586 hypothetical protein; hypothetical protein 611001..611279 Pseudoalteromonas atlantica T6c 4173508 YP_660108.1 CDS Patl_0525 NC_008228.1 611290 613011 D PFAM: Na+/solute symporter; KEGG: ilo:IL1178 Na+/solute symporter, Ssf family; Na+/solute symporter 611290..613011 Pseudoalteromonas atlantica T6c 4173509 YP_660109.1 CDS Patl_0526 NC_008228.1 613208 614350 D PFAM: Domain of unknown function DUF1745; KEGG: cps:CPS_0128 hypothetical protein; hypothetical protein 613208..614350 Pseudoalteromonas atlantica T6c 4173510 YP_660110.1 CDS Patl_0527 NC_008228.1 614383 616209 D TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: tbd:Tbd_1042 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(s); diguanylate cyclase/phosphodiesterase 614383..616209 Pseudoalteromonas atlantica T6c 4173511 YP_660111.1 CDS Patl_0528 NC_008228.1 616438 618273 D PFAM: CBS domain containing protein protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: pha:PSHAa0588 inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase); signal-transduction protein 616438..618273 Pseudoalteromonas atlantica T6c 4173512 YP_660112.1 CDS Patl_0529 NC_008228.1 618306 618980 D PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: cps:CPS_4955 DNA polymerase III epsilon subunit; exonuclease 618306..618980 Pseudoalteromonas atlantica T6c 4173513 YP_660113.1 CDS Patl_0530 NC_008228.1 619131 620309 D PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: cps:CPS_2703 TPR domain protein; hypothetical protein 619131..620309 Pseudoalteromonas atlantica T6c 4173514 YP_660114.1 CDS Patl_0531 NC_008228.1 620372 621211 R PFAM: 2OG-Fe(II) oxygenase; KEGG: ppr:PBPRB0800 putative oxidoreductase iron/ascorbatefamily; 2OG-Fe(II) oxygenase complement(620372..621211) Pseudoalteromonas atlantica T6c 4173515 YP_660115.1 CDS Patl_0532 NC_008228.1 621278 622486 R TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter nucleoside recognition Na+ dependent nucleoside transporter-like; KEGG: son:SO1214 NupC family protein; nucleoside transporter complement(621278..622486) Pseudoalteromonas atlantica T6c 4173516 YP_660116.1 CDS Patl_0533 NC_008228.1 622532 623155 R TIGRFAM: uridine kinase; PFAM: phosphoribulokinase/uridine kinase; KEGG: cps:CPS_1974 uridine kinase; uridine kinase complement(622532..623155) Pseudoalteromonas atlantica T6c 4173517 YP_660117.1 CDS Patl_0534 NC_008228.1 623490 624425 R KEGG: pha:PSHAb0344 hypothetical protein; hypothetical protein complement(623490..624425) Pseudoalteromonas atlantica T6c 4173518 YP_660118.1 CDS Patl_0535 NC_008228.1 624415 625254 R KEGG: pha:PSHAb0343 hypothetical protein; hypothetical protein complement(624415..625254) Pseudoalteromonas atlantica T6c 4173519 YP_660119.1 CDS Patl_0536 NC_008228.1 625702 628728 D KEGG: ilo:IL0583 Oar-like outer membrane protein protein, OmpA family; OmpA family Oar-like outer membrane protein 625702..628728 Pseudoalteromonas atlantica T6c 4173520 YP_660120.1 CDS Patl_0537 NC_008228.1 628798 629973 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: cps:CPS_1964 endonuclease/exonuclease/phosphatase family protein; endonuclease/exonuclease/phosphatase 628798..629973 Pseudoalteromonas atlantica T6c 4173521 YP_660121.1 CDS Patl_0538 NC_008228.1 630064 630528 R regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor complement(630064..630528) Pseudoalteromonas atlantica T6c 4173522 YP_660122.1 CDS Patl_0539 NC_008228.1 630694 631629 D oxidizes malate to oxaloacetate; malate dehydrogenase 630694..631629 Pseudoalteromonas atlantica T6c 4173523 YP_660123.1 CDS Patl_0540 NC_008228.1 631721 632326 R KEGG: cps:CPS_4785 hypothetical protein; hypothetical protein complement(631721..632326) Pseudoalteromonas atlantica T6c 4173524 YP_660124.1 CDS Patl_0541 NC_008228.1 632464 632910 R hypothetical protein complement(632464..632910) Pseudoalteromonas atlantica T6c 4173525 YP_660125.1 CDS Patl_0542 NC_008228.1 632976 633497 D KEGG: pst:PSPTO3908 hypothetical protein; hypothetical protein 632976..633497 Pseudoalteromonas atlantica T6c 4172229 YP_660126.1 CDS Patl_0543 NC_008228.1 633647 634747 R KEGG: hsa:1834 dentin sialophosphoprotein; hypothetical protein complement(633647..634747) Pseudoalteromonas atlantica T6c 4172230 YP_660127.1 CDS Patl_0544 NC_008228.1 635057 635401 R TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF; KEGG: pmu:PM0458 hypothetical HI1723; iron-sulfur cluster assembly accessory protein complement(635057..635401) Pseudoalteromonas atlantica T6c 4172231 YP_660128.1 CDS Patl_0545 NC_008228.1 635516 636214 R KEGG: ilo:IL2241 uncharacterized conserved membrane or secreted protein; hypothetical protein complement(635516..636214) Pseudoalteromonas atlantica T6c 4172232 YP_660129.1 CDS Patl_0546 NC_008228.1 636328 638007 D PFAM: Cl- channel, voltage gated; KEGG: pha:PSHAa2252 voltage-gated ClC-type chloride channel ClcA; VWA containing CoxE-like protein 636328..638007 Pseudoalteromonas atlantica T6c 4172233 YP_660130.1 CDS Patl_0547 NC_008228.1 638047 638475 D PFAM: conserved hypothetical protein 701; KEGG: ilo:IL2243 hypothetical protein; hypothetical protein 638047..638475 Pseudoalteromonas atlantica T6c 4172234 YP_660131.1 CDS Patl_0548 NC_008228.1 639081 639635 D PFAM: GTP cyclohydrolase I; KEGG: psp:PSPPH_1071 GTP cyclohydrolase I; GTP cyclohydrolase I 639081..639635 Pseudoalteromonas atlantica T6c 4172235 YP_660132.1 CDS Patl_0549 NC_008228.1 639866 640855 D PFAM: purine and other phosphorylases, family 1; KEGG: ccr:CC2266 5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase; purine phosphorylase family protein 1 639866..640855 Pseudoalteromonas atlantica T6c 4172236 YP_660133.1 CDS Patl_0550 NC_008228.1 640941 641672 R PFAM: protein of unknown function DUF28; KEGG: vch:VCA0006 hypothetical protein; hypothetical protein complement(640941..641672) Pseudoalteromonas atlantica T6c 4172237 YP_660134.1 CDS Patl_0551 NC_008228.1 641780 642886 R PFAM: AFG1-like ATPase; KEGG: cps:CPS_4344 ATPase, AFG1 family; AFG1-like ATPase complement(641780..642886) Pseudoalteromonas atlantica T6c 4172238 YP_660135.1 CDS Patl_0552 NC_008228.1 643130 643570 D KEGG: ilo:IL0412 hypothetical protein; hypothetical protein 643130..643570 Pseudoalteromonas atlantica T6c 4172239 YP_660136.1 CDS Patl_0553 NC_008228.1 643664 645034 D TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap PDZ/DHR/GLGF; KEGG: son:SO3942 serine protease, HtrA/DegQ/DegS family; protease Do 643664..645034 Pseudoalteromonas atlantica T6c 4172240 YP_660137.1 CDS Patl_0554 NC_008228.1 645212 646198 D PFAM: peptidase S1 and S6, chymotrypsin/Hap PDZ/DHR/GLGF; KEGG: cps:CPS_4347 serine protease DegS; hypothetical protein 645212..646198 Pseudoalteromonas atlantica T6c 4172241 YP_660138.1 CDS Patl_0555 NC_008228.1 646307 647566 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(646307..647566) Pseudoalteromonas atlantica T6c 4172242 YP_660139.1 CDS Patl_0556 NC_008228.1 647636 647893 R PFAM: BolA-like protein; KEGG: sgl:SG0210 hypothetical protein; BolA-like protein complement(647636..647893) Pseudoalteromonas atlantica T6c 4172243 YP_660140.1 CDS Patl_0557 NC_008228.1 647921 648253 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: vpa:VP2660 putative anti-sigma B factor antagonist; anti-sigma-factor antagonist complement(647921..648253) Pseudoalteromonas atlantica T6c 4172244 YP_660141.1 CDS Patl_0558 NC_008228.1 648254 648895 R PFAM: toluene tolerance; KEGG: vpa:VP2661 hypothetical protein; toluene tolerance complement(648254..648895) Pseudoalteromonas atlantica T6c 4172245 YP_660142.1 CDS Patl_0559 NC_008228.1 648927 649391 R PFAM: Mammalian cell entry related; KEGG: cps:CPS_4534 mce family protein; hypothetical protein complement(648927..649391) Pseudoalteromonas atlantica T6c 4172246 YP_660143.1 CDS Patl_0560 NC_008228.1 649405 650184 R PFAM: protein of unknown function DUF140; KEGG: ilo:IL0404 ABC-type transport system involved in resistance to organic solvents, permease component; hypothetical protein complement(649405..650184) Pseudoalteromonas atlantica T6c 4172247 YP_660144.1 CDS Patl_0561 NC_008228.1 650185 650982 R PFAM: ABC transporter related; SMART: ATPase; KEGG: pha:PSHAa2544 transport protein (ABC superfamily, atp-binding); ABC transporter-like protein complement(650185..650982) Pseudoalteromonas atlantica T6c 4174008 YP_660145.1 CDS Patl_0562 NC_008228.1 651314 652276 D TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: pha:PSHAa2545 Na:Ca transport protein (CacA); CaCA family Na(+)/Ca(+) antiporter 651314..652276 Pseudoalteromonas atlantica T6c 4174009 YP_660146.1 CDS Patl_0563 NC_008228.1 652283 653254 D KEGG: pha:PSHAa2546 D-arabinose 5-phosphate isomerase; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein sugar isomerase (SIS); KpsF/GutQ family protein 652283..653254 Pseudoalteromonas atlantica T6c 4174010 YP_660147.1 CDS Patl_0564 NC_008228.1 653254 653808 D TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: cps:CPS_4539 phosphatase, YrbI family; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 653254..653808 Pseudoalteromonas atlantica T6c 4174011 YP_660148.1 CDS Patl_0565 NC_008228.1 653805 654368 D PFAM: protein of unknown function DUF1239; KEGG: pha:PSHAa2548 hypothetical protein; hypothetical protein 653805..654368 Pseudoalteromonas atlantica T6c 4174012 YP_660149.1 CDS Patl_0566 NC_008228.1 654409 654930 D PFAM: OstA-like protein; KEGG: ilo:IL0398 hypothetical protein; OstA-like protein 654409..654930 Pseudoalteromonas atlantica T6c 4174013 YP_660150.1 CDS Patl_0567 NC_008228.1 654930 655655 D PFAM: ABC transporter related; SMART: ATPase; KEGG: ilo:IL0397 unclassified ABC-type transport system, ATPase component; ABC transporter-like protein 654930..655655 Pseudoalteromonas atlantica T6c 4174014 YP_660151.1 CDS Patl_0568 NC_008228.1 655778 657271 D TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor sigma-54 factor, core-binding region sigma-54, DNA-binding; KEGG: cps:CPS_4543 RNA polymerase sigma-54 factor; RNA polymerase sigma-54 subunit RpoN 655778..657271 Pseudoalteromonas atlantica T6c 4174015 YP_660152.1 CDS Patl_0569 NC_008228.1 657297 657584 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: ilo:IL0395 S30EA ribosomal protein; sigma 54 modulation protein/ribosomal protein S30EA 657297..657584 Pseudoalteromonas atlantica T6c 4174016 YP_660153.1 CDS Patl_0570 NC_008228.1 657600 658043 D TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: vfi:VF0385 nitrogen regulatory IIA protein; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 657600..658043 Pseudoalteromonas atlantica T6c 4174017 YP_660154.1 CDS Patl_0571 NC_008228.1 658046 658891 D PFAM: Uncharacterised P-loop ATPase protein UPF0042; KEGG: cps:CPS_4546 conserved hypothetical protein; hypothetical protein 658046..658891 Pseudoalteromonas atlantica T6c 4174018 YP_660155.1 CDS Patl_0572 NC_008228.1 658888 659166 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: pha:PSHAa2555 phosphocarrier protein NPr (HPr-like), nitrogen-related; HPr family phosphocarrier protein 658888..659166 Pseudoalteromonas atlantica T6c 4174019 YP_660156.1 CDS Patl_0573 NC_008228.1 659267 660037 R PFAM: DNA/RNA non-specific endonuclease; KEGG: stm:STM1330 putative DNA/RNA non-specific endonuclease; endonuclease complement(659267..660037) Pseudoalteromonas atlantica T6c 4174020 YP_660157.1 CDS Patl_0574 NC_008228.1 660173 661012 R PFAM: ApbE-like lipoprotein; KEGG: cps:CPS_2787 ApbE family protein; ApbE-like lipoprotein complement(660173..661012) Pseudoalteromonas atlantica T6c 4174021 YP_660158.1 CDS Patl_0575 NC_008228.1 661158 662456 R KEGG: cps:CPS_2788 hypothetical protein; hypothetical protein complement(661158..662456) Pseudoalteromonas atlantica T6c 4174022 YP_660159.1 CDS Patl_0576 NC_008228.1 662447 662686 R KEGG: cps:CPS_2789 putative lipoprotein; putative lipoprotein complement(662447..662686) Pseudoalteromonas atlantica T6c 4174023 YP_660160.1 CDS Patl_0577 NC_008228.1 662691 663209 R PFAM: Redoxin; KEGG: son:SO2100 thioredoxin family protein; redoxin complement(662691..663209) Pseudoalteromonas atlantica T6c 4174024 YP_660161.1 CDS Patl_0578 NC_008228.1 663416 664537 D PFAM: peptidase M28 Nicastrin; KEGG: hch:HCH_01980 predicted aminopeptidase; peptidase M28 663416..664537 Pseudoalteromonas atlantica T6c 4174025 YP_660162.1 CDS Patl_0579 NC_008228.1 664628 665203 R PFAM: Helix-turn-helix, type 11; KEGG: pha:PSHAb0510 putative transcriptional regulator ArsR family; type 11 helix-turn-helix protein complement(664628..665203) Pseudoalteromonas atlantica T6c 4174026 YP_660163.1 CDS Patl_0580 NC_008228.1 665706 666269 D PFAM: Lipocalin-like; KEGG: cps:CPS_2173 lipoprotein Blc; Lipocalin-like protein 665706..666269 Pseudoalteromonas atlantica T6c 4174027 YP_660164.1 CDS Patl_0581 NC_008228.1 666360 666881 D KEGG: cps:CPS_0796 hypothetical protein; hypothetical protein 666360..666881 Pseudoalteromonas atlantica T6c 4173237 YP_660165.1 CDS Patl_0582 NC_008228.1 667007 667345 D TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: bcz:pE33L466_0444 alkylphosphonate uptake protein; alkylphosphonate utilization operon protein PhnA 667007..667345 Pseudoalteromonas atlantica T6c 4173238 YP_660166.1 CDS Patl_0583 NC_008228.1 667442 669196 R PFAM: phospholipid/glycerol acyltransferase; KEGG: cps:CPS_0797 putative hemolysin; phospholipid/glycerol acyltransferase complement(667442..669196) Pseudoalteromonas atlantica T6c 4173239 YP_660167.1 CDS Patl_0584 NC_008228.1 669385 670419 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 669385..670419 Pseudoalteromonas atlantica T6c 4173240 YP_660168.1 CDS Patl_0585 NC_008228.1 670419 671243 D KEGG: bba:Bd2855 putative ABC amino acid transporter solute binding protein; amino acid ABC transporter periplasmic protein 670419..671243 Pseudoalteromonas atlantica T6c 4173241 YP_660169.1 CDS Patl_0586 NC_008228.1 671295 672158 D KEGG: hch:HCH_05423 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; amino acid ABC transporter periplasmic protein 671295..672158 Pseudoalteromonas atlantica T6c 4173242 YP_660170.1 CDS Patl_0587 NC_008228.1 672223 672912 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 672223..672912 Pseudoalteromonas atlantica T6c 4173243 YP_660171.1 CDS Patl_0588 NC_008228.1 672941 674320 D exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 672941..674320 Pseudoalteromonas atlantica T6c 4173244 YP_660172.1 CDS Patl_0589 NC_008228.1 674404 674742 R hypothetical protein complement(674404..674742) Pseudoalteromonas atlantica T6c 4173245 YP_660173.1 CDS Patl_0590 NC_008228.1 675225 675845 D PFAM: Dimethylmenaquinone methyltransferase; KEGG: bha:BH1938 unknown conserved protein in others; dimethylmenaquinone methyltransferase 675225..675845 Pseudoalteromonas atlantica T6c 4173246 YP_660174.1 CDS Patl_0591 NC_008228.1 675868 677709 D PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase; KEGG: vfi:VFA0509 multidrug resistance ABC transporter ATP-binding and permease protein; ABC transporter-like protein 675868..677709 Pseudoalteromonas atlantica T6c 4173247 YP_660175.1 CDS Patl_0592 NC_008228.1 678242 678619 D TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: ilo:IL0339 preprotein translocase subunit SecE; preprotein translocase subunit SecE 678242..678619 Pseudoalteromonas atlantica T6c 4173249 YP_660176.1 CDS Patl_0593 NC_008228.1 678622 679194 D KEGG: cps:CPS_4777 transcription termination/antitermination factor NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG KOW; SMART: NGN KOW (Kyrpides, Ouzounis, Woese) motif; NusG antitermination factor 678622..679194 Pseudoalteromonas atlantica T6c 4173250 YP_660177.1 CDS Patl_0594 NC_008228.1 679596 680024 D PFAM: ribosomal protein L11; KEGG: cps:CPS_4773 ribosomal protein L11; 50S ribosomal protein L11 679596..680024 Pseudoalteromonas atlantica T6c 4173251 YP_660178.1 CDS rplA NC_008228.1 680028 680729 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 680028..680729 Pseudoalteromonas atlantica T6c 4173252 YP_660179.1 CDS rplJ NC_008228.1 681094 681612 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 681094..681612 Pseudoalteromonas atlantica T6c 4173253 YP_660180.1 CDS rplL NC_008228.1 681668 682039 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 681668..682039 Pseudoalteromonas atlantica T6c 4173254 YP_660181.1 CDS rpoB NC_008228.1 682317 686345 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 682317..686345 Pseudoalteromonas atlantica T6c 4174086 YP_660182.1 CDS Patl_0599 NC_008228.1 686436 690623 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 686436..690623 Pseudoalteromonas atlantica T6c 4174087 YP_660183.1 CDS rpsL NC_008228.1 690833 691207 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 690833..691207 Pseudoalteromonas atlantica T6c 4174088 YP_660184.1 CDS Patl_0601 NC_008228.1 691284 691754 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 691284..691754 Pseudoalteromonas atlantica T6c 4174089 YP_660185.1 CDS Patl_0602 NC_008228.1 691767 693872 D TIGRFAM: translation elongation factor G small GTP-binding protein; PFAM: elongation factor G-like protein synthesis factor, GTP-binding elongation factor Tu, domain 2 elongation factor G, domain IV; KEGG: son:SO0228 elongation factor EF-G; translation elongation factor G 691767..693872 Pseudoalteromonas atlantica T6c 4174090 YP_660186.1 CDS Patl_0603 NC_008228.1 693936 695120 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 693936..695120 Pseudoalteromonas atlantica T6c 4174091 YP_660187.1 CDS Patl_0604 NC_008228.1 696007 697932 D PFAM: histidine kinase, HAMP region chemotaxis sensory transducer; KEGG: son:SO4454 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 696007..697932 Pseudoalteromonas atlantica T6c 4174092 YP_660188.1 CDS Patl_0605 NC_008228.1 697954 698583 R PFAM: protein of unknown function UPF0029; KEGG: yps:YPTB0269 hypothetical protein; hypothetical protein complement(697954..698583) Pseudoalteromonas atlantica T6c 4174093 YP_660189.1 CDS Patl_0606 NC_008228.1 698816 701434 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(698816..701434) Pseudoalteromonas atlantica T6c 4174094 YP_660190.1 CDS Patl_0607 NC_008228.1 701738 702358 D PFAM: FKBP-type peptidyl-prolyl isomerase-like peptidylprolyl isomerase, FKBP-type; KEGG: pha:PSHAa1414 FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase); FKBP-type peptidylprolyl isomerase 701738..702358 Pseudoalteromonas atlantica T6c 4174095 YP_660191.1 CDS Patl_0608 NC_008228.1 702556 704121 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS Xanthine/uracil/vitamin C permease sulphate transporter; KEGG: ppr:PBPRA1185 putative sulfate permease family protein; sulfate transporter 702556..704121 Pseudoalteromonas atlantica T6c 4174096 YP_660192.1 CDS Patl_0609 NC_008228.1 704196 704366 R hypothetical protein complement(704196..704366) Pseudoalteromonas atlantica T6c 4174097 YP_660193.1 CDS Patl_0610 NC_008228.1 704745 706373 D PFAM: TrkA-N sodium/hydrogen exchanger; KEGG: cps:CPS_2306 putative glutathione-regulated potassium-efflux system protein; sodium/hydrogen exchanger 704745..706373 Pseudoalteromonas atlantica T6c 4174098 YP_660194.1 CDS Patl_0611 NC_008228.1 706531 707571 D PFAM: alpha/beta hydrolase fold; KEGG: ilo:IL1807 alpha/beta superfamily hydrolase; alpha/beta hydrolase fold protein 706531..707571 Pseudoalteromonas atlantica T6c 4174099 YP_660195.1 CDS Patl_0612 NC_008228.1 707629 708255 R PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: cps:CPS_1844 conserved hypothetical protein TIGR00427; multiple antibiotic resistance (MarC)-like protein complement(707629..708255) Pseudoalteromonas atlantica T6c 4174100 YP_660196.1 CDS Patl_0613 NC_008228.1 708470 709135 D TIGRFAM: yecA family protein; yecA family protein 708470..709135 Pseudoalteromonas atlantica T6c 4174101 YP_660197.1 CDS Patl_0614 NC_008228.1 709146 709532 R KEGG: vvu:VV12887 hypothetical protein; hypothetical protein complement(709146..709532) Pseudoalteromonas atlantica T6c 4174102 YP_660198.1 CDS Patl_0615 NC_008228.1 709635 710612 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: pha:PSHAa2463 hypothetical protein; diguanylate cyclase complement(709635..710612) Pseudoalteromonas atlantica T6c 4174103 YP_660199.1 CDS Patl_0616 NC_008228.1 710884 712671 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: ssp:SSP0251 O-acetylhomoserine sulfhydrylase; Cys/Met metabolism pyridoxal-phosphate-dependent protein 710884..712671 Pseudoalteromonas atlantica T6c 4174104 YP_660200.1 CDS Patl_0617 NC_008228.1 712878 714923 D TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase-like DEAD/DEAH box helicase-like; KEGG: pha:PSHAb0119 putative helicase (RecQ-like); ATP-dependent DNA helicase RecQ 712878..714923 Pseudoalteromonas atlantica T6c 4174105 YP_660201.1 CDS Patl_0618 NC_008228.1 715336 716499 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: cps:CPS_4621 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 715336..716499 Pseudoalteromonas atlantica T6c 4173640 YP_660202.1 CDS Patl_0619 NC_008228.1 716499 719636 D PFAM: acriflavin resistance protein; KEGG: cps:CPS_4620 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 716499..719636 Pseudoalteromonas atlantica T6c 4173641 YP_660203.1 CDS Patl_0620 NC_008228.1 719786 720373 D PFAM: glutathione S-transferase-like; KEGG: pha:PSHAa2489 glutathione S-transferase enzyme with thioredoxin-like domain; glutathione S-transferase-like protein 719786..720373 Pseudoalteromonas atlantica T6c 4173642 YP_660204.1 CDS Patl_0621 NC_008228.1 720406 720705 D PFAM: protein of unknown function DUF1244; KEGG: ppu:PP4633 hypothetical protein; hypothetical protein 720406..720705 Pseudoalteromonas atlantica T6c 4173643 YP_660205.1 CDS Patl_0622 NC_008228.1 721027 721515 D KEGG: cvi:CV2486 hypothetical protein; hypothetical protein 721027..721515 Pseudoalteromonas atlantica T6c 4173644 YP_660206.1 CDS Patl_0623 NC_008228.1 721719 722087 D PFAM: protein of unknown function DUF413; KEGG: ilo:IL2294 hypothetical protein; hypothetical protein 721719..722087 Pseudoalteromonas atlantica T6c 4173645 YP_660207.1 CDS Patl_0624 NC_008228.1 722308 724026 D TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme, central region thiamine pyrophosphate enzyme-like TPP binding region; KEGG: ppr:PBPRA0425 putative acetolactate synthase III, largesubunit; acetolactate synthase large subunit 722308..724026 Pseudoalteromonas atlantica T6c 4173646 YP_660208.1 CDS Patl_0625 NC_008228.1 724026 724523 D TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT; KEGG: cps:CPS_3237 acetolactate synthase III, small subunit; acetolactate synthase small subunit 724026..724523 Pseudoalteromonas atlantica T6c 4173647 YP_660209.1 CDS Patl_0626 NC_008228.1 724619 725203 R PFAM: thymidine kinase; KEGG: vvy:VV1363 thymidine kinase; thymidine kinase complement(724619..725203) Pseudoalteromonas atlantica T6c 4173648 YP_660210.1 CDS Patl_0627 NC_008228.1 725314 727350 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: cps:CPS_1138 GGDEF/EAL domain protein; diguanylate cyclase/phosphodiesterase complement(725314..727350) Pseudoalteromonas atlantica T6c 4173649 YP_660211.1 CDS Patl_0628 NC_008228.1 727478 728119 R PFAM: regulatory protein GntR, HTH GntR-like; KEGG: son:SO2852 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(727478..728119) Pseudoalteromonas atlantica T6c 4173650 YP_660212.1 CDS Patl_0629 NC_008228.1 728129 729325 R TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; KEGG: xac:XAC4292 benzoate transporter; benzoate transporter complement(728129..729325) Pseudoalteromonas atlantica T6c 4173651 YP_660213.1 CDS Patl_0630 NC_008228.1 729431 730285 R PFAM: Bile acid:sodium symporter; KEGG: syn:sll1428 P3 protein; bile acid:sodium symporter complement(729431..730285) Pseudoalteromonas atlantica T6c 4173652 YP_660214.1 CDS Patl_0631 NC_008228.1 730410 731153 R KEGG: mag:amb2748 hypothetical protein; hypothetical protein complement(730410..731153) Pseudoalteromonas atlantica T6c 4173653 YP_660215.1 CDS Patl_0632 NC_008228.1 731253 732002 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ilo:IL1485 short chain dehydrogenase family protein; short chain dehydrogenase complement(731253..732002) Pseudoalteromonas atlantica T6c 4173654 YP_660216.1 CDS Patl_0633 NC_008228.1 732080 732784 R PFAM: Phosphoglycerate mutase; KEGG: aci:ACIAD1884 putative phosphoglycerate mutase related protein; phosphoglycerate mutase complement(732080..732784) Pseudoalteromonas atlantica T6c 4173655 YP_660217.1 CDS Patl_0634 NC_008228.1 732785 733897 R PFAM: aminoglycoside phosphotransferase; KEGG: ilo:IL1486 predicted aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(732785..733897) Pseudoalteromonas atlantica T6c 4173656 YP_660218.1 CDS Patl_0635 NC_008228.1 733899 735119 R PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: ilo:IL1487 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase-like protein complement(733899..735119) Pseudoalteromonas atlantica T6c 4173657 YP_660219.1 CDS Patl_0636 NC_008228.1 735248 736156 D PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: reu:Reut_A1003 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 735248..736156 Pseudoalteromonas atlantica T6c 4173658 YP_660220.1 CDS Patl_0637 NC_008228.1 736215 737423 R PFAM: Rh-like protein/ammonium transporter; KEGG: ppr:PBPRB0379 putative ammonium permease; Rh-like protein/ammonium transporter complement(736215..737423) Pseudoalteromonas atlantica T6c 4172991 YP_660221.1 CDS Patl_0638 NC_008228.1 737823 740459 D PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin putative Ig; KEGG: bja:bll2294 putative alkaline protease; peptidase S8/S53 subtilisin kexin sedolisin 737823..740459 Pseudoalteromonas atlantica T6c 4172992 YP_660222.1 CDS Patl_0639 NC_008228.1 740951 741589 D hypothetical protein 740951..741589 Pseudoalteromonas atlantica T6c 4172993 YP_660223.1 CDS Patl_0640 NC_008228.1 741638 742354 R KEGG: cps:CPS_2782 hypothetical protein; hypothetical protein complement(741638..742354) Pseudoalteromonas atlantica T6c 4172994 YP_660224.1 CDS Patl_0641 NC_008228.1 742351 743109 R KEGG: cps:CPS_2783 putative membrane protein; hypothetical protein complement(742351..743109) Pseudoalteromonas atlantica T6c 4172995 YP_660225.1 CDS Patl_0642 NC_008228.1 743099 743452 R KEGG: cps:CPS_2784 hypothetical protein; hypothetical protein complement(743099..743452) Pseudoalteromonas atlantica T6c 4172996 YP_660226.1 CDS Patl_0643 NC_008228.1 743439 744680 R PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: cps:CPS_2785 sensor histidine kinase; sensor signal transduction histidine kinase complement(743439..744680) Pseudoalteromonas atlantica T6c 4172997 YP_660227.1 CDS Patl_0644 NC_008228.1 744779 745447 R PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: cps:CPS_2786 response regulator; two component transcriptional regulator complement(744779..745447) Pseudoalteromonas atlantica T6c 4172998 YP_660228.1 CDS Patl_0645 NC_008228.1 745646 747004 D TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein MgtE integral membrane region MgtE intracellular region; KEGG: ilo:IL0391 Mg/Co/Ni transporter MgtE (contains CBS domain); magnesium transporter 745646..747004 Pseudoalteromonas atlantica T6c 4172999 YP_660229.1 CDS Patl_0646 NC_008228.1 747008 747874 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: eba:ebA4464 hypothetical protein; hypothetical protein 747008..747874 Pseudoalteromonas atlantica T6c 4173000 YP_660230.1 CDS Patl_0647 NC_008228.1 748009 749178 R catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase complement(748009..749178) Pseudoalteromonas atlantica T6c 4173001 YP_660231.1 CDS Patl_0648 NC_008228.1 749183 750232 R catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase complement(749183..750232) Pseudoalteromonas atlantica T6c 4173002 YP_660232.1 CDS Patl_0649 NC_008228.1 750430 751902 R PFAM: aldehyde dehydrogenase; KEGG: cps:CPS_0634 succinylglutamic semialdehyde dehydrogenase; aldehyde dehydrogenase complement(750430..751902) Pseudoalteromonas atlantica T6c 4173003 YP_660233.1 CDS Patl_0650 NC_008228.1 751906 752940 R PFAM: arginine N-succinyltransferase beta subunit; KEGG: cps:CPS_0635 arginine N-succinyltransferase; arginine N-succinyltransferase complement(751906..752940) Pseudoalteromonas atlantica T6c 4173004 YP_660234.1 CDS argD NC_008228.1 752962 754167 R DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein complement(752962..754167) Pseudoalteromonas atlantica T6c 4173005 YP_660235.1 CDS Patl_0652 NC_008228.1 754436 755590 R KEGG: pha:PSHAa0193 hypothetical protein; putative signal transduction protein complement(754436..755590) Pseudoalteromonas atlantica T6c 4173006 YP_660236.1 CDS Patl_0653 NC_008228.1 755670 756314 R TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: mta:Moth_1341 glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; glutamine amidotransferase of anthranilate synthase complement(755670..756314) Pseudoalteromonas atlantica T6c 4173007 YP_660237.1 CDS Patl_0654 NC_008228.1 756762 757511 D PFAM: electron transfer flavoprotein beta-subunit; KEGG: hch:HCH_03950 electron transfer flavoprotein, beta subunit; electron transfer flavoprotein subunit beta 756762..757511 Pseudoalteromonas atlantica T6c 4173008 YP_660238.1 CDS Patl_0655 NC_008228.1 757537 758466 D PFAM: electron transfer flavoprotein beta-subunit electron transfer flavoprotein, alpha subunit; KEGG: psp:PSPPH_1965 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 757537..758466 Pseudoalteromonas atlantica T6c 4173009 YP_660239.1 CDS Patl_0656 NC_008228.1 758487 760247 D PFAM: acyl-CoA dehydrogenase-like; KEGG: cvi:CV3816 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase-like protein 758487..760247 Pseudoalteromonas atlantica T6c 4173010 YP_660240.1 CDS Patl_0657 NC_008228.1 760422 761435 D PFAM: helix-turn-helix, AraC type; KEGG: pfl:PFL_4468 transcriptional regulator, AraC family; AraC family transcriptional regulator 760422..761435 Pseudoalteromonas atlantica T6c 4173312 YP_660241.1 CDS Patl_0658 NC_008228.1 761791 762804 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(761791..762804) Pseudoalteromonas atlantica T6c 4173313 YP_660242.1 CDS Patl_0659 NC_008228.1 762828 763514 R PFAM: ribulose-phosphate 3-epimerase; KEGG: son:SO0292 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(762828..763514) Pseudoalteromonas atlantica T6c 4173314 YP_660243.1 CDS Patl_0660 NC_008228.1 763830 764555 D TIGRFAM: conserved hypothetical protein; KEGG: pha:PSHAa2824 hypothetical protein; hypothetical protein 763830..764555 Pseudoalteromonas atlantica T6c 4173315 YP_660244.1 CDS Patl_0661 NC_008228.1 764793 765098 D KEGG: son:SO0291 hypothetical protein; hypothetical protein 764793..765098 Pseudoalteromonas atlantica T6c 4173316 YP_660245.1 CDS Patl_0662 NC_008228.1 765104 765301 D KEGG: son:SO0290 hypothetical protein; hypothetical protein 765104..765301 Pseudoalteromonas atlantica T6c 4173317 YP_660246.1 CDS Patl_0663 NC_008228.1 765348 766181 R KEGG: vfi:VF2289 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase complement(765348..766181) Pseudoalteromonas atlantica T6c 4173318 YP_660247.1 CDS Patl_0664 NC_008228.1 766274 767749 R KEGG: vfi:VF2290 DamX protein; hypothetical protein complement(766274..767749) Pseudoalteromonas atlantica T6c 4173319 YP_660248.1 CDS Patl_0665 NC_008228.1 767936 769003 R PFAM: 3-dehydroquinate synthase; KEGG: cps:CPS_0473 3-dehydroquinate synthase; 3-dehydroquinate synthase complement(767936..769003) Pseudoalteromonas atlantica T6c 4173320 YP_660249.1 CDS aroK NC_008228.1 769036 769551 R type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I complement(769036..769551) Pseudoalteromonas atlantica T6c 4173321 YP_660250.1 CDS Patl_0667 NC_008228.1 769786 771528 R TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein NolW-like Secretin/TonB, short N-terminal; KEGG: son:SO0285 type IV pilus biogenesis protein PilQ; type IV pilus secretin PilQ complement(769786..771528) Pseudoalteromonas atlantica T6c 4173322 YP_660251.1 CDS Patl_0668 NC_008228.1 771521 772054 R PFAM: Pilus assembly protein, PilQ; KEGG: cps:CPS_0470 type IV pilus biogenesis protein PilP; pilus assembly protein, PilQ complement(771521..772054) Pseudoalteromonas atlantica T6c 4173323 YP_660252.1 CDS Patl_0669 NC_008228.1 772051 772662 R PFAM: Pilus assembly protein, PilO; KEGG: cps:CPS_0469 type IV pilus biogenesis protein PilO; pilus assembly protein PilO complement(772051..772662) Pseudoalteromonas atlantica T6c 4173324 YP_660253.1 CDS Patl_0670 NC_008228.1 772663 773244 R PFAM: Fimbrial assembly; KEGG: pha:PSHAa2719 type IV pilus biogenesis protein PilN; fimbrial assembly complement(772663..773244) Pseudoalteromonas atlantica T6c 4173325 YP_660254.1 CDS Patl_0671 NC_008228.1 773232 774362 R TIGRFAM: type IV pilus assembly protein PilM; KEGG: pha:PSHAa2720 type IV pilus biogenesis protein PilM; type IV pilus assembly protein PilM complement(773232..774362) Pseudoalteromonas atlantica T6c 4173326 YP_660255.1 CDS Patl_0672 NC_008228.1 774617 775849 D PFAM: phage integrase; KEGG: vpa:VP0380 putative integrase; phage integrase 774617..775849 Pseudoalteromonas atlantica T6c 4173327 YP_660256.1 CDS Patl_0673 NC_008228.1 776394 777047 R KEGG: gsu:GSU2774 hypothetical protein; hypothetical protein complement(776394..777047) Pseudoalteromonas atlantica T6c 4173328 YP_660257.1 CDS Patl_0675 NC_008228.1 777783 778517 R hypothetical protein complement(777783..778517) Pseudoalteromonas atlantica T6c 4173330 YP_660258.1 CDS Patl_0676 NC_008228.1 779075 779485 R hypothetical protein complement(779075..779485) Pseudoalteromonas atlantica T6c 4172651 YP_660259.1 CDS Patl_0677 NC_008228.1 779593 780189 R KEGG: yps:YPTB1873 hypothetical protein; hypothetical protein complement(779593..780189) Pseudoalteromonas atlantica T6c 4172652 YP_660260.1 CDS Patl_0678 NC_008228.1 780204 780797 R PFAM: helix-turn-helix motif; XRE family transcriptional regulator complement(780204..780797) Pseudoalteromonas atlantica T6c 4172653 YP_660261.1 CDS Patl_0679 NC_008228.1 781046 781546 D KEGG: son:SO2988 hypothetical protein; hypothetical protein 781046..781546 Pseudoalteromonas atlantica T6c 4172654 YP_660262.1 CDS Patl_0680 NC_008228.1 781558 781851 D PFAM: Prophage CP4-57 regulatory; phage transcriptional regulator AlpA 781558..781851 Pseudoalteromonas atlantica T6c 4172655 YP_660263.1 CDS Patl_0681 NC_008228.1 781919 782467 D hypothetical protein 781919..782467 Pseudoalteromonas atlantica T6c 4172656 YP_660264.1 CDS Patl_0682 NC_008228.1 782467 783159 D PFAM: DNA methylase N-4/N-6; KEGG: vch:VCA0447 hemagglutinin associated protein; DNA methylase N-4/N-6 782467..783159 Pseudoalteromonas atlantica T6c 4172657 YP_660265.1 CDS Patl_0683 NC_008228.1 783170 783427 D hypothetical protein 783170..783427 Pseudoalteromonas atlantica T6c 4172658 YP_660266.1 CDS Patl_0684 NC_008228.1 783481 783990 D hypothetical protein 783481..783990 Pseudoalteromonas atlantica T6c 4172659 YP_660267.1 CDS Patl_0685 NC_008228.1 783983 784516 D hypothetical protein 783983..784516 Pseudoalteromonas atlantica T6c 4172660 YP_660268.1 CDS Patl_0686 NC_008228.1 784516 784758 D KEGG: bce:BC1874 phage protein; phage protein 784516..784758 Pseudoalteromonas atlantica T6c 4172661 YP_660269.1 CDS Patl_0687 NC_008228.1 784755 785525 D KEGG: tde:TDE1153 hypothetical protein; hypothetical protein 784755..785525 Pseudoalteromonas atlantica T6c 4172662 YP_660270.1 CDS Patl_0688 NC_008228.1 785528 788209 D PFAM: bacteriophage replication gene A; KEGG: spt:SPA2623 putative phage gene; bacteriophage replication protein A 785528..788209 Pseudoalteromonas atlantica T6c 4172663 YP_660271.1 CDS Patl_0689 NC_008228.1 788244 788855 R hypothetical protein complement(788244..788855) Pseudoalteromonas atlantica T6c 4172664 YP_660272.1 CDS Patl_0690 NC_008228.1 789096 789674 D hypothetical protein 789096..789674 Pseudoalteromonas atlantica T6c 4172665 YP_660273.1 CDS Patl_0691 NC_008228.1 789735 790508 D hypothetical protein 789735..790508 Pseudoalteromonas atlantica T6c 4172666 YP_660274.1 CDS Patl_0692 NC_008228.1 790563 790808 R PFAM: phage transcriptional activator, Ogr/delta; KEGG: spt:SPA2622 putative phage gene; phage transcriptional activator, Ogr/delta complement(790563..790808) Pseudoalteromonas atlantica T6c 4172667 YP_660275.1 CDS Patl_0693 NC_008228.1 790979 791593 D hypothetical protein 790979..791593 Pseudoalteromonas atlantica T6c 4172668 YP_660276.1 CDS Patl_0694 NC_008228.1 791614 792630 R TIGRFAM: phage portal protein, PBSX family; PFAM: phage portal protein; KEGG: hch:HCH_00397 phage portal protein, PBSX family; PBSX family phage portal protein complement(791614..792630) Pseudoalteromonas atlantica T6c 4172669 YP_660277.1 CDS Patl_0695 NC_008228.1 792631 794364 R PFAM: protein of unknown function DUF264 putative terminase ATPase subunit; KEGG: hch:HCH_00396 Mu-like prophage FluMu protein GP28; hypothetical protein complement(792631..794364) Pseudoalteromonas atlantica T6c 4172670 YP_660278.1 CDS Patl_0696 NC_008228.1 794593 795474 D PFAM: phage capsid scaffolding; KEGG: hch:HCH_00395 flagellar biosynthesis/type III secretory pathway protein; phage capsid scaffolding 794593..795474 Pseudoalteromonas atlantica T6c 4173428 YP_660279.1 CDS Patl_0697 NC_008228.1 795529 796563 D TIGRFAM: phage major capsid protein, P2 family; PFAM: phage major capsid protein, P2; KEGG: hch:HCH_06766 phage major capsid protein, P2 family; P2 family phage major capsid protein 795529..796563 Pseudoalteromonas atlantica T6c 4173429 YP_660280.1 CDS Patl_0698 NC_008228.1 796658 797503 D KEGG: hch:HCH_00393 probable phage small terminate subunit; hypothetical protein 796658..797503 Pseudoalteromonas atlantica T6c 4173430 YP_660281.1 CDS Patl_0699 NC_008228.1 797613 798068 D KEGG: psp:PSPPH_4967 prophage PSPPH06, putative head completion/stabilization protein; prophage PSPPH06 head completion/stabilization protein 797613..798068 Pseudoalteromonas atlantica T6c 4173431 YP_660282.1 CDS Patl_0700 NC_008228.1 798068 798526 D KEGG: psp:PSPPH_4966 prophage PSPPH06, putative tail protein; prophage PSPPH06 tail protein 798068..798526 Pseudoalteromonas atlantica T6c 4173432 YP_660283.1 CDS Patl_0701 NC_008228.1 798519 799208 D KEGG: hch:HCH_00390 probable phage protein; hypothetical protein 798519..799208 Pseudoalteromonas atlantica T6c 4173433 YP_660284.1 CDS Patl_0702 NC_008228.1 799224 800330 D KEGG: hch:HCH_06772 probable phage protein; hypothetical protein 799224..800330 Pseudoalteromonas atlantica T6c 4173434 YP_660285.1 CDS Patl_0703 NC_008228.1 800334 800783 D KEGG: psp:PSPPH_4963 prophage PSPPH06, putative tail tube protein; prophage PSPPH06 tail tube protein 800334..800783 Pseudoalteromonas atlantica T6c 4173435 YP_660286.1 CDS Patl_0704 NC_008228.1 800784 801383 D KEGG: hch:HCH_06774 hypothetical protein; hypothetical protein 800784..801383 Pseudoalteromonas atlantica T6c 4173436 YP_660287.1 CDS Patl_0705 NC_008228.1 801380 801865 D KEGG: hch:HCH_00385 hypothetical protein; hypothetical protein 801380..801865 Pseudoalteromonas atlantica T6c 4173437 YP_660288.1 CDS Patl_0706 NC_008228.1 801877 802167 D KEGG: hch:HCH_04562 hypothetical protein; hypothetical protein 801877..802167 Pseudoalteromonas atlantica T6c 4173438 YP_660289.1 CDS Patl_0707 NC_008228.1 802206 802499 D KEGG: hch:HCH_00383 probable phage protein; hypothetical protein 802206..802499 Pseudoalteromonas atlantica T6c 4173439 YP_660290.1 CDS Patl_0708 NC_008228.1 802520 802660 D hypothetical protein 802520..802660 Pseudoalteromonas atlantica T6c 4173440 YP_660291.1 CDS Patl_0709 NC_008228.1 802724 804853 D TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: hch:HCH_00382 probable phage protein; TP901 family phage tail tape measure protein 802724..804853 Pseudoalteromonas atlantica T6c 4173441 YP_660292.1 CDS Patl_0710 NC_008228.1 804853 805188 D hypothetical protein 804853..805188 Pseudoalteromonas atlantica T6c 4173442 YP_660293.1 CDS Patl_0711 NC_008228.1 805202 805984 D hypothetical protein 805202..805984 Pseudoalteromonas atlantica T6c 4173443 YP_660294.1 CDS Patl_0712 NC_008228.1 805988 807892 D KEGG: tdn:Tmden_1716 hemolysin-type calcium-binding region; hypothetical protein 805988..807892 Pseudoalteromonas atlantica T6c 4173444 YP_660295.1 CDS Patl_0713 NC_008228.1 807892 808287 D KEGG: hch:HCH_00381 probable phage protein; hypothetical protein 807892..808287 Pseudoalteromonas atlantica T6c 4173445 YP_660296.1 CDS Patl_0714 NC_008228.1 808280 809443 D KEGG: hch:HCH_00380 uncharacterized phage Mu protein GP47-like protein; phage Mu protein GP47-like protein 808280..809443 Pseudoalteromonas atlantica T6c 4173446 YP_660297.1 CDS Patl_0715 NC_008228.1 809440 809970 D KEGG: yps:YPTB3156 putative bacteriophage protein; putative bacteriophage protein 809440..809970 Pseudoalteromonas atlantica T6c 4172171 YP_660298.1 CDS Patl_0716 NC_008228.1 809960 810709 D KEGG: pst:PSPTO4006 tail fiber protein H, putative; hypothetical protein 809960..810709 Pseudoalteromonas atlantica T6c 4172172 YP_660299.1 CDS Patl_0717 NC_008228.1 810706 811911 D hypothetical protein 810706..811911 Pseudoalteromonas atlantica T6c 4172173 YP_660300.1 CDS Patl_0718 NC_008228.1 811913 812518 D hypothetical protein 811913..812518 Pseudoalteromonas atlantica T6c 4172174 YP_660301.1 CDS Patl_0719 NC_008228.1 812536 813276 D KEGG: yps:YPTB3159 possible bacteriophage protein; hypothetical protein 812536..813276 Pseudoalteromonas atlantica T6c 4172175 YP_660302.1 CDS Patl_0720 NC_008228.1 813276 813812 D KEGG: hch:HCH_06785 probable phage protein; hypothetical protein 813276..813812 Pseudoalteromonas atlantica T6c 4172176 YP_660303.1 CDS Patl_0721 NC_008228.1 813802 814479 D KEGG: hch:HCH_00374 hypothetical protein; hypothetical protein 813802..814479 Pseudoalteromonas atlantica T6c 4172177 YP_660304.1 CDS Patl_0722 NC_008228.1 814473 815438 D KEGG: hch:HCH_06787 hypothetical protein; hypothetical protein 814473..815438 Pseudoalteromonas atlantica T6c 4172178 YP_660305.1 CDS Patl_0723 NC_008228.1 816009 818609 D TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51 penicillin-binding protein, transpeptidase; KEGG: vpa:VP2751 penicillin-binding protein 1A; 1A family penicillin-binding protein 816009..818609 Pseudoalteromonas atlantica T6c 4172179 YP_660306.1 CDS Patl_0724 NC_008228.1 818799 820493 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 818799..820493 Pseudoalteromonas atlantica T6c 4172180 YP_660307.1 CDS Patl_0725 NC_008228.1 821162 823021 D PFAM: phage integrase; KEGG: vpa:VP0643 hypothetical protein; phage integrase 821162..823021 Pseudoalteromonas atlantica T6c 4172182 YP_660308.1 CDS Patl_0726 NC_008228.1 823247 824323 D type II site-specific deoxyribonuclease 823247..824323 Pseudoalteromonas atlantica T6c 4172183 YP_660309.1 CDS Patl_0727 NC_008228.1 824348 825466 R KEGG: vch:VCA0198 site-specific DNA-methyltransferase, putative; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase complement(824348..825466) Pseudoalteromonas atlantica T6c 4172184 YP_660310.1 CDS Patl_0728 NC_008228.1 826174 826650 R KEGG: son:SO3886 hypothetical protein; hypothetical protein complement(826174..826650) Pseudoalteromonas atlantica T6c 4172185 YP_660311.1 CDS Patl_0729 NC_008228.1 826668 828674 R PFAM: AAA ATPase, central region; SMART: ATPase; KEGG: son:SO3885 ATPase, AAA family; ATPase AAA complement(826668..828674) Pseudoalteromonas atlantica T6c 4172186 YP_660312.1 CDS Patl_0730 NC_008228.1 828671 829588 R PFAM: phage integrase; KEGG: son:SO3884 site-specific recombinase, phage integrase family; phage integrase complement(828671..829588) Pseudoalteromonas atlantica T6c 4172187 YP_660313.1 CDS Patl_0731 NC_008228.1 829739 830452 R hypothetical protein complement(829739..830452) Pseudoalteromonas atlantica T6c 4172188 YP_660314.1 CDS Patl_0732 NC_008228.1 830725 833514 D PFAM: UvrD/REP helicase; KEGG: mpn:MPN340 DNA helicase PcrA; UvrD/REP helicase 830725..833514 Pseudoalteromonas atlantica T6c 4172189 YP_660315.1 CDS Patl_0733 NC_008228.1 833783 835168 D KEGG: cps:CPS_0493 hypothetical protein; hypothetical protein 833783..835168 Pseudoalteromonas atlantica T6c 4173084 YP_660316.1 CDS Patl_0734 NC_008228.1 835155 835778 D hypothetical protein 835155..835778 Pseudoalteromonas atlantica T6c 4173085 YP_660317.1 CDS Patl_0735 NC_008228.1 836214 837404 D KEGG: lic:LIC13331 histidine kinase sensor protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold; SMART: PAS PAC motif; PAS/PAC sensor signal transduction histidine kinase 836214..837404 Pseudoalteromonas atlantica T6c 4173086 YP_660318.1 CDS Patl_0736 NC_008228.1 837355 837951 R PFAM: regulatory protein, TetR; KEGG: hch:HCH_03535 transcriptional regulator; TetR family transcriptional regulator complement(837355..837951) Pseudoalteromonas atlantica T6c 4173087 YP_660319.1 CDS Patl_0737 NC_008228.1 838095 839189 D KEGG: hch:HCH_03536 predicted Zn-dependent hydrolase of the beta-lactamase fold; Zn-dependent hydrolase 838095..839189 Pseudoalteromonas atlantica T6c 4173088 YP_660320.1 CDS Patl_0738 NC_008228.1 839337 842504 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pca:Pcar_1100 hypothetical protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(839337..842504) Pseudoalteromonas atlantica T6c 4173089 YP_660321.1 CDS Patl_0739 NC_008228.1 842517 843632 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: lpn:lpg2177 HlyD family secretion protein; RND family efflux transporter MFP subunit complement(842517..843632) Pseudoalteromonas atlantica T6c 4173090 YP_660322.1 CDS Patl_0740 NC_008228.1 843979 845463 R KEGG: cps:CPS_0457 hypothetical protein; hypothetical protein complement(843979..845463) Pseudoalteromonas atlantica T6c 4173091 YP_660323.1 CDS Patl_0741 NC_008228.1 845676 846164 D KEGG: pha:PSHAb0131 putative thioredoxin family protein; putative thioredoxin family protein 845676..846164 Pseudoalteromonas atlantica T6c 4173092 YP_660324.1 CDS Patl_0742 NC_008228.1 846470 846901 R PFAM: OsmC-like protein; KEGG: eli:ELI_14070 osmotically inducible protein C; OsmC-like protein complement(846470..846901) Pseudoalteromonas atlantica T6c 4173093 YP_660325.1 CDS Patl_0743 NC_008228.1 847294 847944 R PFAM: regulatory protein, TetR; KEGG: wsu:WS0767 transcription regulator protein; TetR family transcriptional regulator complement(847294..847944) Pseudoalteromonas atlantica T6c 4173094 YP_660326.1 CDS Patl_0744 NC_008228.1 848078 849169 D PFAM: secretion protein HlyD; KEGG: rru:Rru_A0156 secretion protein HlyD; secretion protein HlyD 848078..849169 Pseudoalteromonas atlantica T6c 4173095 YP_660327.1 CDS Patl_0745 NC_008228.1 849274 850827 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: atc:AGR_L_781 multidrug resistance protein B; EmrB/QacA family drug resistance transporter 849274..850827 Pseudoalteromonas atlantica T6c 4173096 YP_660328.1 CDS Patl_0746 NC_008228.1 850992 851579 D KEGG: pha:PSHAa1583 peptide methionine sulfoxide reductase MsrA 2 (protein-methionine-S-oxide reductase 2) (peptide Met(O) reductase 2); TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 850992..851579 Pseudoalteromonas atlantica T6c 4173097 YP_660329.1 CDS Patl_0747 NC_008228.1 851672 852799 R TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: ilo:IL2000 carboxynorspermidine decarboxylase; carboxynorspermidine decarboxylase complement(851672..852799) Pseudoalteromonas atlantica T6c 4173098 YP_660330.1 CDS Patl_0748 NC_008228.1 852899 854101 R PFAM: Saccharopine dehydrogenase; KEGG: ilo:IL1999 carboxynorspermidine dehydrogenase; saccharopine dehydrogenase complement(852899..854101) Pseudoalteromonas atlantica T6c 4173099 YP_660331.1 CDS Patl_0749 NC_008228.1 854375 854626 D KEGG: hch:HCH_06873 predicted membrane protein; membrane protein 854375..854626 Pseudoalteromonas atlantica T6c 4173100 YP_660332.1 CDS Patl_0750 NC_008228.1 854956 855519 R KEGG: hch:HCH_06994 predicted ATPase/kinase involved in NAD metabolism; NAD metabolism ATPase/kinase complement(854956..855519) Pseudoalteromonas atlantica T6c 4173101 YP_660333.1 CDS Patl_0751 NC_008228.1 855570 856208 R TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: hch:HCH_06995 nicotinamide mononucleotide transporter; nicotinamide mononucleotide transporter PnuC complement(855570..856208) Pseudoalteromonas atlantica T6c 4173102 YP_660334.1 CDS Patl_0752 NC_008228.1 856205 857311 R PFAM: Kelch repeat Kelch; KEGG: mmu:50868 kelch-like ECH-associated protein 1; kelch repeat-containing protein complement(856205..857311) Pseudoalteromonas atlantica T6c 4173930 YP_660335.1 CDS Patl_0753 NC_008228.1 857399 858355 R KEGG: pha:PSHAa2700 D-cysteine desulfhydrase, PLP-dependent enzyme; D-cysteine desulfhydrase complement(857399..858355) Pseudoalteromonas atlantica T6c 4173931 YP_660336.1 CDS Patl_0754 NC_008228.1 858394 859446 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: rpb:RPB_4536 diguanylate cyclase; diguanylate cyclase complement(858394..859446) Pseudoalteromonas atlantica T6c 4173932 YP_660337.1 CDS Patl_0755 NC_008228.1 859543 860253 R KEGG: cps:CPS_2539 ZIP zinc transporter family protein; ZIP zinc transporter family protein complement(859543..860253) Pseudoalteromonas atlantica T6c 4173933 YP_660338.1 CDS Patl_0756 NC_008228.1 860506 860895 D KEGG: lpf:lpl2164 hypothetical protein; hypothetical protein 860506..860895 Pseudoalteromonas atlantica T6c 4173934 YP_660339.1 CDS Patl_0757 NC_008228.1 860913 862352 D PFAM: MscS Mechanosensitive ion channel; KEGG: sil:SPO3437 mechanosensitive ion channel family protein; mechanosensitive ion channel protein MscS 860913..862352 Pseudoalteromonas atlantica T6c 4173935 YP_660340.1 CDS aceK NC_008228.1 862411 864144 R catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein complement(862411..864144) Pseudoalteromonas atlantica T6c 4173936 YP_660341.1 CDS Patl_0759 NC_008228.1 864453 865283 D KEGG: vfi:VF1334 oxalate/formate antiporter; oxalate/formate antiporter 864453..865283 Pseudoalteromonas atlantica T6c 4173937 YP_660342.1 CDS Patl_0760 NC_008228.1 865666 866388 D hypothetical protein 865666..866388 Pseudoalteromonas atlantica T6c 4173938 YP_660343.1 CDS Patl_0761 NC_008228.1 866410 869055 R PFAM: regulatory protein, LuxR; KEGG: mlo:mll4526 transcriptional regulatory; LuxR family transcriptional regulator complement(866410..869055) Pseudoalteromonas atlantica T6c 4173939 YP_660344.1 CDS Patl_0762 NC_008228.1 869318 869788 D KEGG: rba:RB11490 conserved hypothetical protein-putative transmembrane protein; putative transmembrane protein 869318..869788 Pseudoalteromonas atlantica T6c 4173940 YP_660345.1 CDS Patl_0763 NC_008228.1 869785 870072 D hypothetical protein 869785..870072 Pseudoalteromonas atlantica T6c 4173941 YP_660346.1 CDS Patl_0764 NC_008228.1 870147 870563 R PFAM: BLUF domain containing protein; KEGG: tel:tll0078 hypothetical protein; BLUF domain-containing protein complement(870147..870563) Pseudoalteromonas atlantica T6c 4173942 YP_660347.1 CDS Patl_0765 NC_008228.1 870665 872470 D PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: cps:CPS_3608 sensor histidine kinase; histidine kinase 870665..872470 Pseudoalteromonas atlantica T6c 4173943 YP_660348.1 CDS Patl_0766 NC_008228.1 872901 874967 D PFAM: Catalase-related Catalase-like; KEGG: noc:Noc_1165 catalase; catalase 872901..874967 Pseudoalteromonas atlantica T6c 4173944 YP_660349.1 CDS Patl_0767 NC_008228.1 875474 878125 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: eli:ELI_00460 TonB-dependent receptor; TonB-dependent receptor 875474..878125 Pseudoalteromonas atlantica T6c 4173945 YP_660350.1 CDS Patl_0768 NC_008228.1 878245 880236 D PFAM: sulfotransferase TPR repeat; SMART: Tetratricopeptide region; KEGG: eli:ELI_00455 TPR domain protein; sulfotransferase 878245..880236 Pseudoalteromonas atlantica T6c 4173946 YP_660351.1 CDS Patl_0769 NC_008228.1 880886 881620 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_CH03352 probable 3-oxoacyl-[acyl-carrier-protein] reductase protein; short-chain dehydrogenase/reductase SDR complement(880886..881620) Pseudoalteromonas atlantica T6c 4173947 YP_660352.1 CDS Patl_0770 NC_008228.1 882028 883005 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:bll6834 probable ABC transporter substrate-binding protein; TRAP dicarboxylate transporter subunit DctP 882028..883005 Pseudoalteromonas atlantica T6c 4173948 YP_660353.1 CDS Patl_0771 NC_008228.1 883008 883532 D PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: bja:bll6833 probable ABC transporter permease protein; tripartite ATP-independent periplasmic transporter DctQ 883008..883532 Pseudoalteromonas atlantica T6c 4173949 YP_660354.1 CDS Patl_0772 NC_008228.1 883535 884815 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bja:bll6832 probable ABC transporter permease protein; TRAP dicarboxylate transporter subunit DctM 883535..884815 Pseudoalteromonas atlantica T6c 4174106 YP_660355.1 CDS Patl_0773 NC_008228.1 884901 885614 D PFAM: helix-turn-helix, AraC type; KEGG: vvy:VVA1522 AraC-type DNA-binding domain-containing protein; AraC family transcriptional regulator 884901..885614 Pseudoalteromonas atlantica T6c 4174107 YP_660356.1 CDS Patl_0774 NC_008228.1 885726 886691 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: vvu:VV21027 permease of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 885726..886691 Pseudoalteromonas atlantica T6c 4174108 YP_660357.1 CDS Patl_0775 NC_008228.1 887034 888035 D TIGRFAM: PEP motif putative anchor-like; PFAM: protein of unknown function DUF1555; PEP domain-containing protein 887034..888035 Pseudoalteromonas atlantica T6c 4174109 YP_660358.1 CDS Patl_0776 NC_008228.1 888142 890079 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(888142..890079) Pseudoalteromonas atlantica T6c 4174110 YP_660359.1 CDS Patl_0777 NC_008228.1 890327 892759 D TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rba:RB1828 hypothetical protein-signal peptide and transmembrane prediction; twin-arginine translocation pathway signal protein 890327..892759 Pseudoalteromonas atlantica T6c 4174111 YP_660360.1 CDS Patl_0778 NC_008228.1 893269 894993 D KEGG: rba:RB2404 hypothetical protein-transmembrane prediction; transmembrane prediction 893269..894993 Pseudoalteromonas atlantica T6c 4174112 YP_660361.1 CDS Patl_0779 NC_008228.1 895003 896505 D PFAM: Mannitol dehydrogenase-like Mannitol dehydrogenase rossman-like; KEGG: rba:RB2403 D-mannonate oxidoreductase; mannitol dehydrogenase-like protein 895003..896505 Pseudoalteromonas atlantica T6c 4174113 YP_660362.1 CDS Patl_0780 NC_008228.1 896649 898076 R KEGG: son:SO2189 conserved hypothetical protein; hypothetical protein complement(896649..898076) Pseudoalteromonas atlantica T6c 4174114 YP_660363.1 CDS Patl_0781 NC_008228.1 898288 899181 D KEGG: aae:aq_1923 putative protein; hypothetical protein 898288..899181 Pseudoalteromonas atlantica T6c 4174115 YP_660364.1 CDS Patl_0782 NC_008228.1 899207 899818 R KEGG: pha:PSHAa2197 hypothetical protein; hypothetical protein complement(899207..899818) Pseudoalteromonas atlantica T6c 4174116 YP_660365.1 CDS Patl_0783 NC_008228.1 899820 901406 R KEGG: pha:PSHAa2198 hypothetical protein; hypothetical protein complement(899820..901406) Pseudoalteromonas atlantica T6c 4174117 YP_660366.1 CDS Patl_0784 NC_008228.1 901572 903071 R PFAM: metallophosphoesterase; KEGG: oih:OB0802 hypothetical protein; metallophosphoesterase complement(901572..903071) Pseudoalteromonas atlantica T6c 4174118 YP_660367.1 CDS Patl_0785 NC_008228.1 903211 905700 R PFAM: TonB-dependent receptor Secretin/TonB, short N-terminal TonB-dependent receptor, plug; KEGG: nar:Saro_0250 TonB-dependent receptor; TonB-dependent receptor, plug complement(903211..905700) Pseudoalteromonas atlantica T6c 4174119 YP_660368.1 CDS Patl_0786 NC_008228.1 905871 907022 R PFAM: FecR protein; KEGG: ppu:PP0866 transmembrane sensor, putative; putative FecR protein complement(905871..907022) Pseudoalteromonas atlantica T6c 4174120 YP_660369.1 CDS Patl_0787 NC_008228.1 907019 907693 R PFAM: sigma-70 region 2 Sigma-70, region 4 type 2; KEGG: pfo:Pfl_4345 sigma-24 (FecI); ECF subfamily RNA polymerase sigma-24 factor complement(907019..907693) Pseudoalteromonas atlantica T6c 4174121 YP_660370.1 CDS Patl_0788 NC_008228.1 907936 908778 R hypothetical protein complement(907936..908778) Pseudoalteromonas atlantica T6c 4174122 YP_660371.1 CDS Patl_0789 NC_008228.1 909153 909995 R hypothetical protein complement(909153..909995) Pseudoalteromonas atlantica T6c 4174123 YP_660372.1 CDS Patl_0790 NC_008228.1 910274 910672 R TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: ret:RHE_CH00191 cytidine deaminase protein; cytidine deaminase complement(910274..910672) Pseudoalteromonas atlantica T6c 4174124 YP_660373.1 CDS Patl_0791 NC_008228.1 910873 911784 D lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 910873..911784 Pseudoalteromonas atlantica T6c 4173103 YP_660374.1 CDS Patl_0792 NC_008228.1 911824 913152 D KEGG: pha:PSHAa1003 hypothetical protein; hypothetical protein 911824..913152 Pseudoalteromonas atlantica T6c 4173104 YP_660375.1 CDS Patl_0793 NC_008228.1 913252 914310 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 913252..914310 Pseudoalteromonas atlantica T6c 4173105 YP_660376.1 CDS Patl_0794 NC_008228.1 914423 915016 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3 beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: vvy:VVA1076 CbbY family protein; beta-phosphoglucomutase family hydrolase 914423..915016 Pseudoalteromonas atlantica T6c 4173106 YP_660377.1 CDS Patl_0795 NC_008228.1 915921 917570 R PFAM: sulfatase; KEGG: rba:RB200 mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase); sulfatase complement(915921..917570) Pseudoalteromonas atlantica T6c 4173108 YP_660378.1 CDS Patl_0796 NC_008228.1 917823 918581 D PFAM: Helix-turn-helix, type 11; SMART: regulatory proteins, IclR; KEGG: xcv:XCV4290 transcriptional regulator, IclR family; IclR family transcriptional regulator 917823..918581 Pseudoalteromonas atlantica T6c 4173109 YP_660379.1 CDS Patl_0797 NC_008228.1 919173 920189 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: bcl:ABC0438 Zn-dependent alcohol dehydrogenase; alcohol dehydrogenase GroES-like protein 919173..920189 Pseudoalteromonas atlantica T6c 4173110 YP_660380.1 CDS Patl_0798 NC_008228.1 920189 921019 D PFAM: amidohydrolase 2; KEGG: rba:RB9860 hypothetical protein; amidohydrolase 2 920189..921019 Pseudoalteromonas atlantica T6c 4173111 YP_660381.1 CDS Patl_0799 NC_008228.1 921030 921968 D PFAM: aldo/keto reductase; KEGG: ath:At4g33670 L-galactose dehydrogenase (L-GalDH); aldo/keto reductase 921030..921968 Pseudoalteromonas atlantica T6c 4173112 YP_660382.1 CDS Patl_0800 NC_008228.1 922495 924033 R PFAM: D-galactarate dehydratase/Altronate hydrolase-like; KEGG: ccr:CC1488 altronate hydrolase; altronate dehydratase complement(922495..924033) Pseudoalteromonas atlantica T6c 4173113 YP_660383.1 CDS Patl_0801 NC_008228.1 924263 925687 D TIGRFAM: L-fucose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: hit:NTHI0865 L-fucose permease; L-fucose transporter 924263..925687 Pseudoalteromonas atlantica T6c 4173114 YP_660384.1 CDS Patl_0802 NC_008228.1 926028 927530 D PFAM: tryptophan halogenase; KEGG: eli:ELI_03185 tryptophan halogenase, putative; tryptophan halogenase 926028..927530 Pseudoalteromonas atlantica T6c 4173115 YP_660385.1 CDS Patl_0803 NC_008228.1 927508 929028 D PFAM: FAD dependent oxidoreductase tryptophan halogenase; KEGG: eli:ELI_03185 tryptophan halogenase, putative; tryptophan halogenase 927508..929028 Pseudoalteromonas atlantica T6c 4173116 YP_660386.1 CDS Patl_0804 NC_008228.1 929370 931946 D PFAM: glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, TIM barrel glycoside hydrolase family 2, sugar binding; KEGG: xcv:XCV4356 beta-galactosidase; glycoside hydrolase 929370..931946 Pseudoalteromonas atlantica T6c 4173117 YP_660387.1 CDS Patl_0805 NC_008228.1 931959 932846 D PFAM: glycoside hydrolase, family 16; KEGG: pfo:Pfl_2825 glycoside hydrolase, family 16; glycoside hydrolase 931959..932846 Pseudoalteromonas atlantica T6c 4173118 YP_660388.1 CDS Patl_0806 NC_008228.1 932953 933621 R hypothetical protein complement(932953..933621) Pseudoalteromonas atlantica T6c 4173119 YP_660389.1 CDS Patl_0807 NC_008228.1 933650 935149 R PFAM: tryptophan halogenase; KEGG: pha:PSHAa1353 tryptophan halogenase; tryptophan halogenase complement(933650..935149) Pseudoalteromonas atlantica T6c 4173120 YP_660390.1 CDS Patl_0808 NC_008228.1 935240 936940 R PFAM: Ig-like, group 2; KEGG: ctc:CTC00747 putative surface/cell-adhesion protein, multiple big2 domain; Ig-like protein complement(935240..936940) Pseudoalteromonas atlantica T6c 4173121 YP_660391.1 CDS Patl_0809 NC_008228.1 937015 940671 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_2359 TonB-dependent receptor; TonB-dependent receptor complement(937015..940671) Pseudoalteromonas atlantica T6c 4172306 YP_660392.1 CDS Patl_0810 NC_008228.1 941366 942718 D PFAM: Carbohydrate binding family 6 glycoside hydrolase, family 43; SMART: Cellulose binding, type IV; KEGG: bth:BT1781 xylosidase/arabinosidase; carbohydrate-binding family 6 protein 941366..942718 Pseudoalteromonas atlantica T6c 4172307 YP_660393.1 CDS Patl_0811 NC_008228.1 942763 943677 D PFAM: protein of unknown function DUF1080; KEGG: ccr:CC1082 hypothetical protein; hypothetical protein 942763..943677 Pseudoalteromonas atlantica T6c 4172308 YP_660394.1 CDS Patl_0812 NC_008228.1 943674 944966 D KEGG: sco:SCO3481 hypothetical protein; hypothetical protein 943674..944966 Pseudoalteromonas atlantica T6c 4172309 YP_660395.1 CDS Patl_0813 NC_008228.1 945020 945325 D KEGG: ilo:IL1417 outer membrane protein, porin family; porin family outer membrane protein 945020..945325 Pseudoalteromonas atlantica T6c 4172310 YP_660396.1 CDS Patl_0814 NC_008228.1 945395 946813 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: protein of unknown function DUF1501; KEGG: rba:RB9886 hypothetical protein-putative related to sulfatases; twin-arginine translocation pathway signal protein complement(945395..946813) Pseudoalteromonas atlantica T6c 4172311 YP_660397.1 CDS Patl_0815 NC_008228.1 946823 950047 R PFAM: Planctomycete cytochrome C protein of unknown function DUF1549; KEGG: rba:RB7229 hypothetical protein-signal peptide and transmembrane prediction; hypothetical protein complement(946823..950047) Pseudoalteromonas atlantica T6c 4172312 YP_660398.1 CDS Patl_0816 NC_008228.1 950056 951300 R TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rba:RB9882 similar to peptidylglycine monooxygenase; twin-arginine translocation pathway signal protein complement(950056..951300) Pseudoalteromonas atlantica T6c 4172313 YP_660399.1 CDS Patl_0817 NC_008228.1 951300 952697 R KEGG: rba:RB12097 hypothetical protein-signal peptide prediction; hypothetical protein complement(951300..952697) Pseudoalteromonas atlantica T6c 4172314 YP_660400.1 CDS Patl_0818 NC_008228.1 952867 953748 D PFAM: helix-turn-helix, AraC type; KEGG: bth:BT3667 transcriptional regulator; AraC family transcriptional regulator 952867..953748 Pseudoalteromonas atlantica T6c 4172315 YP_660401.1 CDS Patl_0819 NC_008228.1 953886 955457 R PFAM: sulfatase; KEGG: bth:BT3333 arylsulfatase A precursor (ASA); sulfatase complement(953886..955457) Pseudoalteromonas atlantica T6c 4172316 YP_660402.1 CDS Patl_0820 NC_008228.1 955473 957356 R PFAM: sulfatase; KEGG: rba:RB198 N-acetylgalactosamine-4-sulfatase precursor; sulfatase complement(955473..957356) Pseudoalteromonas atlantica T6c 4172317 YP_660403.1 CDS Patl_0821 NC_008228.1 957359 960598 R PFAM: glycoside hydrolase, family 42, domain 5, loop region glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, TIM barrel glycoside hydrolase family 2, sugar binding; KEGG: tma:TM1193 beta-galactosidase; glycoside hydrolase complement(957359..960598) Pseudoalteromonas atlantica T6c 4172318 YP_660404.1 CDS Patl_0822 NC_008228.1 960764 961120 D KEGG: xoo:XOO0340 hypothetical protein; hypothetical protein 960764..961120 Pseudoalteromonas atlantica T6c 4172319 YP_660405.1 CDS Patl_0823 NC_008228.1 961282 962886 D PFAM: glycoside hydrolase, family 29 (alpha-L-fucosidase); KEGG: rba:RB5816 alpha-L-fucosidase; alpha-L-fucosidase 961282..962886 Pseudoalteromonas atlantica T6c 4172320 YP_660406.1 CDS Patl_0824 NC_008228.1 962928 964292 D PFAM: glycoside hydrolase, family 16; KEGG: sco:SCO3471 extracellular agarase precursor; glycoside hydrolase 962928..964292 Pseudoalteromonas atlantica T6c 4172321 YP_660407.1 CDS Patl_0825 NC_008228.1 964467 966668 R PFAM: glycoside hydrolase, family 3-like; KEGG: bfs:BF0758 putative glycosyl hydrolase; beta-glucosidase complement(964467..966668) Pseudoalteromonas atlantica T6c 4172322 YP_660408.1 CDS Patl_0826 NC_008228.1 966778 968661 D PFAM: sulfatase Ig-like, group 2; KEGG: rba:RB5305 arylsulphatase A; sulfatase 966778..968661 Pseudoalteromonas atlantica T6c 4172323 YP_660409.1 CDS Patl_0827 NC_008228.1 968658 969536 D PFAM: helix-turn-helix, AraC type; KEGG: bld:BLi03167 YtdP; AraC family transcriptional regulator 968658..969536 Pseudoalteromonas atlantica T6c 4172324 YP_660410.1 CDS Patl_0828 NC_008228.1 969541 971043 D PFAM: lipolytic enzyme, G-D-S-L; KEGG: bth:BT4096 hypothetical protein; G-D-S-L lipolytic protein 969541..971043 Pseudoalteromonas atlantica T6c 4173969 YP_660411.1 CDS Patl_0829 NC_008228.1 971089 972621 D PFAM: sulfatase; KEGG: rba:RB13148 iduronate-sulfatase or arylsulfatase A; sulfatase 971089..972621 Pseudoalteromonas atlantica T6c 4173970 YP_660412.1 CDS Patl_0830 NC_008228.1 972733 974640 R KEGG: bth:BT3132 sialic acid-specific 9-O-acetylesterase; sialic acid-specific 9-O-acetylesterase complement(972733..974640) Pseudoalteromonas atlantica T6c 4173971 YP_660413.1 CDS Patl_0831 NC_008228.1 974691 976304 R PFAM: glycoside hydrolase, family 29 (alpha-L-fucosidase); KEGG: rba:RB5816 alpha-L-fucosidase; alpha-L-fucosidase complement(974691..976304) Pseudoalteromonas atlantica T6c 4173972 YP_660414.1 CDS Patl_0832 NC_008228.1 976664 979603 D PFAM: glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, TIM barrel glycoside hydrolase family 2, sugar binding; KEGG: bth:BT0983 beta-galactosidase; glycoside hydrolase 976664..979603 Pseudoalteromonas atlantica T6c 4173973 YP_660415.1 CDS Patl_0833 NC_008228.1 979593 981230 D KEGG: rba:RB13259 hypothetical protein; hypothetical protein 979593..981230 Pseudoalteromonas atlantica T6c 4173974 YP_660416.1 CDS Patl_0834 NC_008228.1 981235 982713 D PFAM: Mannitol dehydrogenase-like Mannitol dehydrogenase rossman-like; KEGG: ccr:CC1487 mannitol 2-dehydrogenase; mannitol dehydrogenase-like protein 981235..982713 Pseudoalteromonas atlantica T6c 4173975 YP_660417.1 CDS Patl_0835 NC_008228.1 982726 984294 D TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pha:PSHAa1768 sodium/hexose cotransport protein; SSS family solute/sodium (Na+) symporter 982726..984294 Pseudoalteromonas atlantica T6c 4173976 YP_660418.1 CDS Patl_0836 NC_008228.1 984317 985264 D PFAM: PfkB; KEGG: pha:PSHAa1745 ketodeoxygluconokinase; PfkB protein 984317..985264 Pseudoalteromonas atlantica T6c 4173977 YP_660419.1 CDS Patl_0837 NC_008228.1 985264 986187 D KEGG: bld:BLi03370 hypothetical protein; dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein 985264..986187 Pseudoalteromonas atlantica T6c 4173978 YP_660420.1 CDS Patl_0838 NC_008228.1 986256 987026 R hypothetical protein complement(986256..987026) Pseudoalteromonas atlantica T6c 4173979 YP_660421.1 CDS Patl_0839 NC_008228.1 987484 990435 D PFAM: Ig-like, group 2; KEGG: rba:RB3421 probable beta-agarase [precursor]; Ig-like protein 987484..990435 Pseudoalteromonas atlantica T6c 4173980 YP_660422.1 CDS Patl_0840 NC_008228.1 990436 991392 R PFAM: transposase, IS111A/IS1328/IS1533 transposase IS116/IS110/IS902; KEGG: cps:CPS_2742 ISCps7, transposase; transposase IS116/IS110/IS902 complement(990436..991392) Pseudoalteromonas atlantica T6c 4173981 YP_660423.1 CDS Patl_0841 NC_008228.1 991595 991897 D hypothetical protein 991595..991897 Pseudoalteromonas atlantica T6c 4173982 YP_660424.1 CDS Patl_0842 NC_008228.1 992448 994088 R PFAM: glycoside hydrolase, family 43; KEGG: bcl:ABC1148 xylosidase/arabinosidase; alpha-L-arabinofuranosidase complement(992448..994088) Pseudoalteromonas atlantica T6c 4173983 YP_660425.1 CDS Patl_0843 NC_008228.1 994210 995064 R PFAM: glycoside hydrolase, family 16; KEGG: rba:RB3123 probable glycosyl hydrolases-putative kappa-carrageenase precursor; glycoside hydrolase complement(994210..995064) Pseudoalteromonas atlantica T6c 4173984 YP_660426.1 CDS Patl_0844 NC_008228.1 995709 996758 R PFAM: Rieske [2Fe-2S] region; KEGG: pfl:PFL_3471 vanillate O-demethylase, oxygenase subunit; Rieske (2Fe-2S) domain-containing protein complement(995709..996758) Pseudoalteromonas atlantica T6c 4173985 YP_660427.1 CDS Patl_0845 NC_008228.1 997021 997716 D PFAM: regulatory protein GntR, HTH GntR-like; KEGG: ppu:PP3738 transcriptional regulator VanR, putative; GntR family transcriptional regulator 997021..997716 Pseudoalteromonas atlantica T6c 4173986 YP_660428.1 CDS Patl_0846 NC_008228.1 997818 998729 R PFAM: regulatory protein, LysR; KEGG: ppu:PP3196 nodulation protein D1; LysR family transcriptional regulator complement(997818..998729) Pseudoalteromonas atlantica T6c 4173987 YP_660429.1 CDS Patl_0847 NC_008228.1 998845 999897 D PFAM: amidohydrolase 2; KEGG: sco:SCO6305 hypothetical protein; aminocarboxymuconate-semialdehyde decarboxylase 998845..999897 Pseudoalteromonas atlantica T6c 4173988 YP_660430.1 CDS Patl_0848 NC_008228.1 1000097 1001035 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sma:SAV565 putative 2,3-dihydroxybiphenyl-1,2-dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1000097..1001035 Pseudoalteromonas atlantica T6c 4173697 YP_660431.1 CDS Patl_0849 NC_008228.1 1001078 1002157 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sco:SCO6308 hydrolase; fumarylacetoacetate (FAA) hydrolase 1001078..1002157 Pseudoalteromonas atlantica T6c 4173698 YP_660432.1 CDS Patl_0850 NC_008228.1 1002356 1003549 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: cps:CPS_4039 putative glutathione-independent formaldehyde dehydrogenase; alcohol dehydrogenase GroES-like protein 1002356..1003549 Pseudoalteromonas atlantica T6c 4173699 YP_660433.1 CDS Patl_0851 NC_008228.1 1003648 1004598 R PFAM: helix-turn-helix, AraC type; KEGG: mlo:mlr1331 probable transcriptional regulator; AraC family transcriptional regulator complement(1003648..1004598) Pseudoalteromonas atlantica T6c 4173700 YP_660434.1 CDS Patl_0852 NC_008228.1 1004702 1005769 D PFAM: Rieske [2Fe-2S] region; KEGG: sco:SCO6680 oxidoreductase alpha subunit; Rieske (2Fe-2S) domain-containing protein 1004702..1005769 Pseudoalteromonas atlantica T6c 4173701 YP_660435.1 CDS Patl_0853 NC_008228.1 1005941 1006849 R PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ppu:PP3196 nodulation protein D1; LysR family transcriptional regulator complement(1005941..1006849) Pseudoalteromonas atlantica T6c 4173702 YP_660436.1 CDS Patl_0854 NC_008228.1 1007033 1008028 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ppu:PP3205 fumarylacetoacetate hydrolase family protein; fumarylacetoacetate (FAA) hydrolase 1007033..1008028 Pseudoalteromonas atlantica T6c 4173703 YP_660437.1 CDS Patl_0855 NC_008228.1 1008028 1008816 D PFAM: putative cyclase; KEGG: ppu:PP3207 cyclase, putative; putative cyclase 1008028..1008816 Pseudoalteromonas atlantica T6c 4173704 YP_660438.1 CDS Patl_0856 NC_008228.1 1008873 1010033 D KEGG: ppu:PP3195 hypothetical protein; hypothetical protein 1008873..1010033 Pseudoalteromonas atlantica T6c 4173705 YP_660439.1 CDS Patl_0857 NC_008228.1 1010044 1010976 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:bll6427 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 1010044..1010976 Pseudoalteromonas atlantica T6c 4173706 YP_660440.1 CDS Patl_0858 NC_008228.1 1010982 1011344 D PFAM: Rieske [2Fe-2S] region; KEGG: bja:bll6426 hypothetical protein; Rieske (2Fe-2S) domain-containing protein 1010982..1011344 Pseudoalteromonas atlantica T6c 4173707 YP_660441.1 CDS Patl_0859 NC_008228.1 1011341 1012471 D PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: bja:bll6425 hypothetical protein; hypothetical protein 1011341..1012471 Pseudoalteromonas atlantica T6c 4173708 YP_660442.1 CDS Patl_0860 NC_008228.1 1013094 1013471 D hypothetical protein 1013094..1013471 Pseudoalteromonas atlantica T6c 4173709 YP_660443.1 CDS Patl_0861 NC_008228.1 1013568 1014245 D hypothetical protein 1013568..1014245 Pseudoalteromonas atlantica T6c 4173710 YP_660444.1 CDS Patl_0862 NC_008228.1 1014279 1015235 R PFAM: transposase, IS111A/IS1328/IS1533 transposase IS116/IS110/IS902; KEGG: cps:CPS_2742 ISCps7, transposase; transposase IS116/IS110/IS902 complement(1014279..1015235) Pseudoalteromonas atlantica T6c 4173711 YP_660445.1 CDS Patl_0863 NC_008228.1 1015563 1016771 R PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase; transposase, IS4 complement(1015563..1016771) Pseudoalteromonas atlantica T6c 4173712 YP_660446.1 CDS Patl_0864 NC_008228.1 1016894 1017466 D hypothetical protein 1016894..1017466 Pseudoalteromonas atlantica T6c 4173713 YP_660447.1 CDS Patl_0865 NC_008228.1 1018873 1021362 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_2088 TonB-dependent receptor; TonB-dependent receptor 1018873..1021362 Pseudoalteromonas atlantica T6c 4173714 YP_660448.1 CDS Patl_0866 NC_008228.1 1021929 1022828 R PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ppu:PP3196 nodulation protein D1; LysR family transcriptional regulator complement(1021929..1022828) Pseudoalteromonas atlantica T6c 4173715 YP_660449.1 CDS Patl_0867 NC_008228.1 1023142 1024215 D PFAM: Rieske [2Fe-2S] region; KEGG: rpb:RPB_1908 Rieske (2Fe-2S) protein; Rieske (2Fe-2S) domain-containing protein 1023142..1024215 Pseudoalteromonas atlantica T6c 4171996 YP_660450.1 CDS Patl_0868 NC_008228.1 1024367 1024777 D PFAM: DoxX; KEGG: ret:RHE_CH02231 hypothetical conserved membrane protein; DoxX protein 1024367..1024777 Pseudoalteromonas atlantica T6c 4171997 YP_660451.1 CDS Patl_0869 NC_008228.1 1024823 1025779 D PFAM: ferredoxin oxidoreductase FAD/NAD(P)-binding Oxidoreductase FAD-binding region; KEGG: pfl:PFL_3472 vanillate O-demethylase oxidoreductase; ferredoxin 1024823..1025779 Pseudoalteromonas atlantica T6c 4171998 YP_660452.1 CDS Patl_0870 NC_008228.1 1025986 1027590 D PFAM: sulfatase; KEGG: pfo:Pfl_0208 sulfatase; sulfatase 1025986..1027590 Pseudoalteromonas atlantica T6c 4171999 YP_660453.1 CDS Patl_0871 NC_008228.1 1028189 1028932 R PFAM: Siderophore-interacting protein FAD-binding 9, siderophore-interacting; KEGG: rba:RB11489 vulnibactin utilization protein VIUB; siderophore-interacting protein complement(1028189..1028932) Pseudoalteromonas atlantica T6c 4172000 YP_660454.1 CDS Patl_0872 NC_008228.1 1028959 1029636 R PFAM: glutathione S-transferase-like; KEGG: atc:AGR_C_1527 glutathione S-transferase; glutathione S-transferase-like protein complement(1028959..1029636) Pseudoalteromonas atlantica T6c 4172001 YP_660455.1 CDS Patl_0874 NC_008228.1 1030393 1031952 D PFAM: Carboxylesterase, type B; KEGG: tfu:Tfu_2427 putative carboxylesterase; carboxylesterase 1030393..1031952 Pseudoalteromonas atlantica T6c 4172003 YP_660456.1 CDS Patl_0875 NC_008228.1 1032121 1033332 R PFAM: major facilitator superfamily MFS_1; KEGG: ppu:PP3203 major facilitator family transporter; major facilitator superfamily transporter complement(1032121..1033332) Pseudoalteromonas atlantica T6c 4172004 YP_660457.1 CDS Patl_0876 NC_008228.1 1033828 1034814 D PFAM: beta-lactamase-like; KEGG: xac:XAC2994 hydrolase; beta-lactamase-like protein 1033828..1034814 Pseudoalteromonas atlantica T6c 4172005 YP_660458.1 CDS Patl_0878 NC_008228.1 1036136 1036765 D hypothetical protein 1036136..1036765 Pseudoalteromonas atlantica T6c 4172007 YP_660459.1 CDS Patl_0879 NC_008228.1 1036849 1039473 D hypothetical protein 1036849..1039473 Pseudoalteromonas atlantica T6c 4172008 YP_660460.1 CDS Patl_0880 NC_008228.1 1039675 1040676 D PFAM: glycoside hydrolase, family 16; KEGG: rba:RB3123 probable glycosyl hydrolases-putative kappa-carrageenase precursor; glycoside hydrolase 1039675..1040676 Pseudoalteromonas atlantica T6c 4172009 YP_660461.1 CDS Patl_0881 NC_008228.1 1040699 1042231 D PFAM: sulfatase; KEGG: rba:RB6765 N-acetylgalactosamine 6-sulfate sulfatase (GALNS); sulfatase 1040699..1042231 Pseudoalteromonas atlantica T6c 4172010 YP_660462.1 CDS Patl_0882 NC_008228.1 1042701 1043162 D KEGG: pha:PSHAb0050 hypothetical protein; hypothetical protein 1042701..1043162 Pseudoalteromonas atlantica T6c 4172011 YP_660463.1 CDS Patl_0883 NC_008228.1 1043467 1043730 D KEGG: bld:BLi02834 YrhK; hypothetical protein 1043467..1043730 Pseudoalteromonas atlantica T6c 4172012 YP_660464.1 CDS Patl_0884 NC_008228.1 1043860 1044639 R PFAM: protein of unknown function DUF1080; KEGG: ccr:CC1633 hypothetical protein; hypothetical protein complement(1043860..1044639) Pseudoalteromonas atlantica T6c 4172013 YP_660465.1 CDS Patl_0885 NC_008228.1 1044832 1047258 R hypothetical protein complement(1044832..1047258) Pseudoalteromonas atlantica T6c 4172014 YP_660466.1 CDS Patl_0886 NC_008228.1 1047358 1049106 R PFAM: Ig-like, group 2; KEGG: cac:CAC3086 protein containing cell adhesion domain; Ig-like protein complement(1047358..1049106) Pseudoalteromonas atlantica T6c 4172015 YP_660467.1 CDS Patl_0887 NC_008228.1 1049213 1052923 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_2359 TonB-dependent receptor; TonB-dependent receptor complement(1049213..1052923) Pseudoalteromonas atlantica T6c 4172933 YP_660468.1 CDS Patl_0888 NC_008228.1 1054099 1055652 D PFAM: sulfatase; KEGG: sco:SCO7547 sulfatase; sulfatase 1054099..1055652 Pseudoalteromonas atlantica T6c 4172934 YP_660469.1 CDS Patl_0889 NC_008228.1 1055728 1057230 D PFAM: sulfatase; KEGG: rba:RB348 arylsulfatase B; sulfatase 1055728..1057230 Pseudoalteromonas atlantica T6c 4172935 YP_660470.1 CDS Patl_0890 NC_008228.1 1057378 1059318 D KEGG: rba:RB11088 similar to ASPIC; hypothetical protein 1057378..1059318 Pseudoalteromonas atlantica T6c 4172936 YP_660471.1 CDS Patl_0891 NC_008228.1 1059484 1061181 D PFAM: sulfatase; KEGG: rba:RB5424 iduronate-2-sulfatase; sulfatase 1059484..1061181 Pseudoalteromonas atlantica T6c 4172937 YP_660472.1 CDS Patl_0892 NC_008228.1 1061178 1063103 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like; KEGG: bth:BT2458 putative pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein-like protein 1061178..1063103 Pseudoalteromonas atlantica T6c 4172938 YP_660473.1 CDS Patl_0893 NC_008228.1 1063103 1064368 D hypothetical protein 1063103..1064368 Pseudoalteromonas atlantica T6c 4172939 YP_660474.1 CDS Patl_0894 NC_008228.1 1064775 1065536 D PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mlo:mll7194 transcriptional regulator; GntR family transcriptional regulator 1064775..1065536 Pseudoalteromonas atlantica T6c 4172940 YP_660475.1 CDS Patl_0895 NC_008228.1 1065590 1067005 D PFAM: sulfatase; KEGG: rba:RB348 arylsulfatase B; sulfatase 1065590..1067005 Pseudoalteromonas atlantica T6c 4172941 YP_660476.1 CDS Patl_0896 NC_008228.1 1067420 1068862 D PFAM: aldehyde dehydrogenase; KEGG: lmf:LMOf2365_0935 succinate-semialdehyde dehydrogenase; aldehyde dehydrogenase 1067420..1068862 Pseudoalteromonas atlantica T6c 4172942 YP_660477.1 CDS Patl_0897 NC_008228.1 1068862 1070025 D PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: sil:SPO2414 mandelate racemase/muconate lactonizing enzyme family protein; mandelate racemase/muconate lactonizing-like protein 1068862..1070025 Pseudoalteromonas atlantica T6c 4172943 YP_660478.1 CDS Patl_0898 NC_008228.1 1070031 1071092 D PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: xcv:XCV1794 putative 2-oxo-3-deoxygalactonate kinase; 2-keto-3-deoxy-galactonokinase 1070031..1071092 Pseudoalteromonas atlantica T6c 4172944 YP_660479.1 CDS Patl_0899 NC_008228.1 1071159 1071809 D PFAM: KDPG and KHG aldolase; KEGG: pfo:Pfl_4124 KDPG and KHG aldolase; KDPG and KHG aldolase 1071159..1071809 Pseudoalteromonas atlantica T6c 4172945 YP_660480.1 CDS Patl_0900 NC_008228.1 1071940 1073496 D TIGRFAM: sugar transporter; PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: bth:BT0436 arabinose-proton symporter; sugar transporter 1071940..1073496 Pseudoalteromonas atlantica T6c 4172946 YP_660481.1 CDS Patl_0901 NC_008228.1 1073655 1074395 D PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mlo:mll7194 transcriptional regulator; GntR family transcriptional regulator 1073655..1074395 Pseudoalteromonas atlantica T6c 4172947 YP_660482.1 CDS Patl_0902 NC_008228.1 1074669 1075148 R hypothetical protein complement(1074669..1075148) Pseudoalteromonas atlantica T6c 4172948 YP_660483.1 CDS Patl_0903 NC_008228.1 1075469 1075723 R KEGG: ppr:PBPRB1708 hypothetical transposase of Tn10; hypothetical protein complement(1075469..1075723) Pseudoalteromonas atlantica T6c 4172949 YP_660484.1 CDS Patl_0904 NC_008228.1 1075739 1075894 R hypothetical protein complement(1075739..1075894) Pseudoalteromonas atlantica T6c 4172950 YP_660485.1 CDS Patl_0905 NC_008228.1 1076060 1076413 D PFAM: regulatory protein, MerR; KEGG: hch:HCH_03406 predicted transcriptional regulator; MerR family transcriptional regulator 1076060..1076413 Pseudoalteromonas atlantica T6c 4172951 YP_660486.1 CDS Patl_0906 NC_008228.1 1076474 1077295 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ava:Ava_1011 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1076474..1077295 Pseudoalteromonas atlantica T6c 4171960 YP_660487.1 CDS Patl_0907 NC_008228.1 1077475 1078458 D PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAa2057 hypothetical protein; hypothetical protein 1077475..1078458 Pseudoalteromonas atlantica T6c 4171961 YP_660488.1 CDS Patl_0908 NC_008228.1 1078807 1079130 R KEGG: vvy:VV1797 hypothetical protein; hypothetical protein complement(1078807..1079130) Pseudoalteromonas atlantica T6c 4171962 YP_660489.1 CDS Patl_0909 NC_008228.1 1079279 1079692 R hypothetical protein complement(1079279..1079692) Pseudoalteromonas atlantica T6c 4171963 YP_660490.1 CDS Patl_0910 NC_008228.1 1080397 1082394 D PFAM: protein of unknown function DUF1680; KEGG: rba:RB5313 conserved hypothetical protein-putative ATP binding protein; hypothetical protein 1080397..1082394 Pseudoalteromonas atlantica T6c 4171964 YP_660491.1 CDS Patl_0911 NC_008228.1 1082683 1084677 D KEGG: bba:Bd0328 rhs family protein; hypothetical protein 1082683..1084677 Pseudoalteromonas atlantica T6c 4171965 YP_660492.1 CDS Patl_0912 NC_008228.1 1084924 1085823 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xac:XAC1178 oxidoreductase; short-chain dehydrogenase/reductase SDR complement(1084924..1085823) Pseudoalteromonas atlantica T6c 4171966 YP_660493.1 CDS Patl_0913 NC_008228.1 1086933 1087784 D hypothetical protein 1086933..1087784 Pseudoalteromonas atlantica T6c 4171967 YP_660494.1 CDS Patl_0914 NC_008228.1 1087832 1088350 R KEGG: eli:ELI_09215 hypothetical protein; hypothetical protein complement(1087832..1088350) Pseudoalteromonas atlantica T6c 4171968 YP_660495.1 CDS Patl_0915 NC_008228.1 1088420 1089460 R PFAM: protein of unknown function UPF0118; KEGG: xcb:XC_0080 hypothetical protein; hypothetical protein complement(1088420..1089460) Pseudoalteromonas atlantica T6c 4171969 YP_660496.1 CDS Patl_0916 NC_008228.1 1090177 1090674 D KEGG: bba:Bd0894 hypothetical protein; hypothetical protein 1090177..1090674 Pseudoalteromonas atlantica T6c 4171970 YP_660497.1 CDS Patl_0917 NC_008228.1 1091362 1092030 D KEGG: rpb:RPB_1618 hypothetical protein; hypothetical protein 1091362..1092030 Pseudoalteromonas atlantica T6c 4171971 YP_660498.1 CDS Patl_0918 NC_008228.1 1092023 1092604 D KEGG: rru:Rru_A3045 hypothetical protein; hypothetical protein 1092023..1092604 Pseudoalteromonas atlantica T6c 4171972 YP_660499.1 CDS Patl_0919 NC_008228.1 1092671 1093237 D KEGG: nmu:Nmul_A2305 hypothetical protein; hypothetical protein 1092671..1093237 Pseudoalteromonas atlantica T6c 4171973 YP_660500.1 CDS Patl_0920 NC_008228.1 1094567 1095544 D KEGG: vpa:VP1992 hypothetical protein; hypothetical protein 1094567..1095544 Pseudoalteromonas atlantica T6c 4171974 YP_660501.1 CDS Patl_0921 NC_008228.1 1095674 1096702 D catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 1095674..1096702 Pseudoalteromonas atlantica T6c 4171975 YP_660502.1 CDS Patl_0922 NC_008228.1 1096774 1097733 R PFAM: 2-nitropropane dioxygenase, NPD; KEGG: ccr:CC1570 hypothetical protein; 2-nitropropane dioxygenase complement(1096774..1097733) Pseudoalteromonas atlantica T6c 4171976 YP_660503.1 CDS Patl_0923 NC_008228.1 1098092 1098868 D KEGG: pae:PA2095 hypothetical protein; hypothetical protein 1098092..1098868 Pseudoalteromonas atlantica T6c 4171977 YP_660504.1 CDS Patl_0924 NC_008228.1 1099213 1100481 D PFAM: DNA/RNA non-specific endonuclease; KEGG: fnu:FN1280 endonuclease; DNA/RNA non-specific endonuclease 1099213..1100481 Pseudoalteromonas atlantica T6c 4171978 YP_660505.1 CDS Patl_0925 NC_008228.1 1100914 1101645 D TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC Septum formation inhibitor MinC-like; KEGG: pst:PSPTO3872 septum site-determining protein MinC; septum site-determining protein MinC 1100914..1101645 Pseudoalteromonas atlantica T6c 4171979 YP_660506.1 CDS Patl_0926 NC_008228.1 1101746 1102555 D TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pae:PA3244 cell division inhibitor MinD; septum site-determining protein MinD 1101746..1102555 Pseudoalteromonas atlantica T6c 4172133 YP_660507.1 CDS minE NC_008228.1 1102555 1102806 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1102555..1102806 Pseudoalteromonas atlantica T6c 4172134 YP_660508.1 CDS Patl_0928 NC_008228.1 1102963 1103400 R PFAM: GCN5-related N-acetyltransferase; KEGG: plu:plu3536 unnamed protein product; some similarities with spermidine acetyltransferase; N-acetyltransferase GCN5 complement(1102963..1103400) Pseudoalteromonas atlantica T6c 4172135 YP_660509.1 CDS Patl_0929 NC_008228.1 1103486 1104340 R PFAM: protein of unknown function DUF980; KEGG: cps:CPS_2687 hypothetical protein; hypothetical protein complement(1103486..1104340) Pseudoalteromonas atlantica T6c 4172136 YP_660510.1 CDS Patl_0930 NC_008228.1 1104718 1106361 D PFAM: peptidase S15 X-Pro dipeptidyl-peptidase-like; KEGG: lmo:lmo2755 similar to acylase and diesterase; X-Pro dipeptidyl-peptidase-like protein 1104718..1106361 Pseudoalteromonas atlantica T6c 4172137 YP_660511.1 CDS Patl_0931 NC_008228.1 1106804 1108303 R KEGG: gvi:glr1347 hypothetical protein; hypothetical protein complement(1106804..1108303) Pseudoalteromonas atlantica T6c 4172138 YP_660512.1 CDS Patl_0932 NC_008228.1 1108477 1110999 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2973 secreted TonB-dependent receptor; TonB-dependent receptor, plug complement(1108477..1110999) Pseudoalteromonas atlantica T6c 4172139 YP_660513.1 CDS Patl_0933 NC_008228.1 1111842 1113746 R TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ppr:PBPRB0504 hypothetical permease; TRAP transporter, 4TM/12TM fusion protein complement(1111842..1113746) Pseudoalteromonas atlantica T6c 4172140 YP_660514.1 CDS Patl_0934 NC_008228.1 1113913 1114839 R TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: ppr:PBPRB0505 hypothetical immunogenic protein; TRAP transporter solute receptor TAXI family protein complement(1113913..1114839) Pseudoalteromonas atlantica T6c 4172141 YP_660515.1 CDS Patl_0935 NC_008228.1 1115027 1117912 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2973 secreted TonB-dependent receptor; TonB-dependent receptor, plug complement(1115027..1117912) Pseudoalteromonas atlantica T6c 4172142 YP_660516.1 CDS Patl_0936 NC_008228.1 1118029 1119081 R PFAM: FecR protein; KEGG: cps:CPS_0244 putative regulatory protein; putative FecR protein complement(1118029..1119081) Pseudoalteromonas atlantica T6c 4172143 YP_660517.1 CDS Patl_0937 NC_008228.1 1119084 1119704 R PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: cps:CPS_0243 putative RNA polymerase sigma-70 factor FecI; ECF subfamily RNA polymerase sigma-24 factor complement(1119084..1119704) Pseudoalteromonas atlantica T6c 4172144 YP_660518.1 CDS Patl_0938 NC_008228.1 1120076 1120600 R KEGG: cps:CPS_0903 hypothetical protein; hypothetical protein complement(1120076..1120600) Pseudoalteromonas atlantica T6c 4172145 YP_660519.1 CDS Patl_0939 NC_008228.1 1120789 1123080 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC3461 TonB-dependent receptor; TonB-dependent receptor complement(1120789..1123080) Pseudoalteromonas atlantica T6c 4172146 YP_660520.1 CDS Patl_0940 NC_008228.1 1123645 1125987 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC3436 TonB-dependent receptor; TonB-dependent receptor 1123645..1125987 Pseudoalteromonas atlantica T6c 4172147 YP_660521.1 CDS Patl_0941 NC_008228.1 1125993 1127231 D PFAM: peptidase M19, renal dipeptidase; KEGG: ccr:CC2746 dipeptidase; peptidase M19 1125993..1127231 Pseudoalteromonas atlantica T6c 4172148 YP_660522.1 CDS Patl_0942 NC_008228.1 1127325 1127867 R KEGG: pha:PSHAb0144 conserved protein of unknown function ; putative secreted protein; hypothetical protein complement(1127325..1127867) Pseudoalteromonas atlantica T6c 4172149 YP_660523.1 CDS Patl_0943 NC_008228.1 1128196 1128711 D KEGG: hch:HCH_01288 hypothetical protein; hypothetical protein 1128196..1128711 Pseudoalteromonas atlantica T6c 4172150 YP_660524.1 CDS Patl_0944 NC_008228.1 1128966 1129367 R SMART: Rhodanese-like; KEGG: ilo:IL1695 rhodanese-related sulfurtransferase; rhodanese-like protein complement(1128966..1129367) Pseudoalteromonas atlantica T6c 4172151 YP_660525.1 CDS Patl_0945 NC_008228.1 1129375 1130169 R PFAM: protein of unknown function DUF81; KEGG: cef:CE0317 hypothetical protein; hypothetical protein complement(1129375..1130169) Pseudoalteromonas atlantica T6c 4173122 YP_660526.1 CDS Patl_0946 NC_008228.1 1130247 1131113 D PFAM: beta-lactamase-like; KEGG: cvi:CV0042 hypothetical protein; beta-lactamase-like protein 1130247..1131113 Pseudoalteromonas atlantica T6c 4173123 YP_660527.1 CDS Patl_0947 NC_008228.1 1131124 1132743 R PFAM: response regulator receiver; KEGG: pha:PSHAa1088 TPR motives; response regulator receiver protein complement(1131124..1132743) Pseudoalteromonas atlantica T6c 4173124 YP_660528.1 CDS Patl_0948 NC_008228.1 1133011 1134501 D TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: son:SO1678 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 1133011..1134501 Pseudoalteromonas atlantica T6c 4173125 YP_660529.1 CDS Patl_0949 NC_008228.1 1134513 1135670 D PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: pha:PSHAa1456 acyl-CoA dehydrogenase protein; acyl-CoA dehydrogenase-like protein 1134513..1135670 Pseudoalteromonas atlantica T6c 4173126 YP_660530.1 CDS Patl_0950 NC_008228.1 1135764 1136894 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: cps:CPS_1607 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase 1135764..1136894 Pseudoalteromonas atlantica T6c 4173127 YP_660531.1 CDS Patl_0951 NC_008228.1 1136897 1137817 D KEGG: son:SO1682 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase 1136897..1137817 Pseudoalteromonas atlantica T6c 4173128 YP_660532.1 CDS fabG NC_008228.1 1137877 1138638 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1137877..1138638 Pseudoalteromonas atlantica T6c 4173129 YP_660533.1 CDS Patl_0953 NC_008228.1 1138987 1140543 D KEGG: sth:STH1184 hypothetical protein, aspartate-rich; hypothetical protein 1138987..1140543 Pseudoalteromonas atlantica T6c 4173130 YP_660534.1 CDS Patl_0954 NC_008228.1 1140679 1141278 D PFAM: Peptidoglycan-binding domain 1; peptidoglycan binding domain-containing protein 1140679..1141278 Pseudoalteromonas atlantica T6c 4173131 YP_660535.1 CDS Patl_0955 NC_008228.1 1141279 1141542 R hypothetical protein complement(1141279..1141542) Pseudoalteromonas atlantica T6c 4173132 YP_660536.1 CDS Patl_0956 NC_008228.1 1141864 1142643 R PFAM: glutamine amidotransferase, class-II; KEGG: eca:ECA3472 hypothetical protein; glutamine amidotransferase, class-II complement(1141864..1142643) Pseudoalteromonas atlantica T6c 4173133 YP_660537.1 CDS Patl_0957 NC_008228.1 1142778 1143269 D hypothetical protein 1142778..1143269 Pseudoalteromonas atlantica T6c 4173134 YP_660538.1 CDS Patl_0958 NC_008228.1 1143550 1145889 D KEGG: cps:CPS_0806 hypothetical protein; hypothetical protein 1143550..1145889 Pseudoalteromonas atlantica T6c 4173135 YP_660539.1 CDS Patl_0959 NC_008228.1 1145889 1146761 D KEGG: cps:CPS_0806 hypothetical protein; hypothetical protein 1145889..1146761 Pseudoalteromonas atlantica T6c 4173136 YP_660540.1 CDS Patl_0960 NC_008228.1 1146762 1148213 D KEGG: cps:CPS_0807 hypothetical protein; hypothetical protein 1146762..1148213 Pseudoalteromonas atlantica T6c 4173137 YP_660541.1 CDS Patl_0961 NC_008228.1 1148224 1150959 R PFAM: protein of unknown function RIO1 protein kinase TPR repeat Tetratricopeptide TPR_2; SMART: Tyrosine protein kinase Serine/threonine protein kinase Tetratricopeptide region; KEGG: gvi:glr1096 serine/threonine protein kinase; serine/threonin protein kinase complement(1148224..1150959) Pseudoalteromonas atlantica T6c 4173138 YP_660542.1 CDS Patl_0962 NC_008228.1 1151071 1151646 D PFAM: sigma factor, ECF-like; KEGG: hch:HCH_04888 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein; ECF subfamily RNA polymerase sigma-24 factor 1151071..1151646 Pseudoalteromonas atlantica T6c 4173139 YP_660543.1 CDS Patl_0963 NC_008228.1 1151732 1152067 R hypothetical protein complement(1151732..1152067) Pseudoalteromonas atlantica T6c 4173140 YP_660544.1 CDS Patl_0964 NC_008228.1 1152458 1153468 D PFAM: Rhodanese-like; KEGG: vpa:VPA1597 hypothetical protein; hypothetical protein 1152458..1153468 Pseudoalteromonas atlantica T6c 4173141 YP_660545.1 CDS Patl_0965 NC_008228.1 1153561 1153809 D PFAM: Calcium-binding EF-hand; KEGG: ath:At2g17890 calcium-dependent protein kinase family protein / CDPK family protein; signal transduction protein 1153561..1153809 Pseudoalteromonas atlantica T6c 4173814 YP_660546.1 CDS Patl_0966 NC_008228.1 1153897 1155081 R PFAM: Saccharopine dehydrogenase; KEGG: nwi:Nwi_1410 saccharopine dehydrogenase; saccharopine dehydrogenase complement(1153897..1155081) Pseudoalteromonas atlantica T6c 4173815 YP_660547.1 CDS Patl_0967 NC_008228.1 1155298 1157907 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa0840 TonB-dependent receptor; TonB-dependent receptor complement(1155298..1157907) Pseudoalteromonas atlantica T6c 4173816 YP_660548.1 CDS Patl_0968 NC_008228.1 1158364 1159827 R PFAM: pyruvate kinase; KEGG: son:SO2491 pyruvate kinase II; pyruvate kinase complement(1158364..1159827) Pseudoalteromonas atlantica T6c 4173817 YP_660549.1 CDS Patl_0969 NC_008228.1 1160140 1160994 R Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR complement(1160140..1160994) Pseudoalteromonas atlantica T6c 4173818 YP_660550.1 CDS Patl_0970 NC_008228.1 1161270 1162760 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1161270..1162760 Pseudoalteromonas atlantica T6c 4173819 YP_660551.1 CDS Patl_0971 NC_008228.1 1162762 1163454 D TIGRFAM: 6-phosphogluconolactonase; KEGG: cps:CPS_2282 6-phosphogluconolactonase; 6-phosphogluconolactonase 1162762..1163454 Pseudoalteromonas atlantica T6c 4173820 YP_660552.1 CDS Patl_0972 NC_008228.1 1163464 1165287 D catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 1163464..1165287 Pseudoalteromonas atlantica T6c 4173821 YP_660553.1 CDS Patl_0973 NC_008228.1 1165290 1166243 D KEGG: yps:YPTB2700 glucokinase; TIGRFAM: glucokinase; PFAM: Glucokinase; glucokinase 1165290..1166243 Pseudoalteromonas atlantica T6c 4173822 YP_660554.1 CDS Patl_0974 NC_008228.1 1166249 1166896 D catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 1166249..1166896 Pseudoalteromonas atlantica T6c 4173823 YP_660555.1 CDS Patl_0975 NC_008228.1 1166966 1167373 R KEGG: pha:PSHAa1887 hypothetical protein; hypothetical protein complement(1166966..1167373) Pseudoalteromonas atlantica T6c 4173824 YP_660556.1 CDS Patl_0976 NC_008228.1 1167439 1167789 R KEGG: cps:CPS_3290 hypothetical protein; hypothetical protein complement(1167439..1167789) Pseudoalteromonas atlantica T6c 4173825 YP_660557.1 CDS Patl_0977 NC_008228.1 1167867 1169177 R catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase complement(1167867..1169177) Pseudoalteromonas atlantica T6c 4173826 YP_660558.1 CDS Patl_0978 NC_008228.1 1169201 1170577 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(1169201..1170577) Pseudoalteromonas atlantica T6c 4173827 YP_660559.1 CDS Patl_0979 NC_008228.1 1170577 1171815 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(1170577..1171815) Pseudoalteromonas atlantica T6c 4173828 YP_660560.1 CDS Patl_0980 NC_008228.1 1171851 1172768 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(1171851..1172768) Pseudoalteromonas atlantica T6c 4173829 YP_660561.1 CDS Patl_0981 NC_008228.1 1172778 1173551 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(1172778..1173551) Pseudoalteromonas atlantica T6c 4173830 YP_660562.1 CDS argC NC_008228.1 1173548 1174576 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(1173548..1174576) Pseudoalteromonas atlantica T6c 4173831 YP_660563.1 CDS Patl_0983 NC_008228.1 1174917 1176062 D catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 1174917..1176062 Pseudoalteromonas atlantica T6c 4173832 YP_660564.1 CDS Patl_0984 NC_008228.1 1176149 1177225 D PFAM: Kelch repeat; KEGG: cps:CPS_3966 kelch motif domain protein; kelch repeat-containing protein 1176149..1177225 Pseudoalteromonas atlantica T6c 4173486 YP_660565.1 CDS mgsA NC_008228.1 1177288 1177695 D catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 1177288..1177695 Pseudoalteromonas atlantica T6c 4173487 YP_660566.1 CDS Patl_0986 NC_008228.1 1177846 1178694 R KEGG: cps:CPS_1751 hypothetical protein; hypothetical protein complement(1177846..1178694) Pseudoalteromonas atlantica T6c 4173488 YP_660567.1 CDS Patl_0987 NC_008228.1 1178871 1179578 D PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: pha:PSHAa0375 transcriptional regulator; two component transcriptional regulator 1178871..1179578 Pseudoalteromonas atlantica T6c 4173489 YP_660568.1 CDS Patl_0988 NC_008228.1 1179575 1180978 D PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: pha:PSHAa0374 sensor histidine kinase protein; sensor signal transduction histidine kinase 1179575..1180978 Pseudoalteromonas atlantica T6c 4173490 YP_660569.1 CDS Patl_0989 NC_008228.1 1181180 1182088 D PFAM: alpha/beta hydrolase fold; KEGG: son:SO4733 lysophospholipase L2; alpha/beta hydrolase fold protein 1181180..1182088 Pseudoalteromonas atlantica T6c 4173491 YP_660570.1 CDS Patl_0990 NC_008228.1 1182154 1182618 D TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pha:PSHAa0371 tRNA/rRNA methyltransferase; RNA methyltransferase 1182154..1182618 Pseudoalteromonas atlantica T6c 4173492 YP_660571.1 CDS fre NC_008228.1 1182710 1183423 R NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase complement(1182710..1183423) Pseudoalteromonas atlantica T6c 4173493 YP_660572.1 CDS Patl_0992 NC_008228.1 1183936 1184169 D TIGRFAM: conserved hypothetical protein; KEGG: pha:PSHAb0336 hypothetical protein; hypothetical protein 1183936..1184169 Pseudoalteromonas atlantica T6c 4173494 YP_660573.1 CDS Patl_0993 NC_008228.1 1184240 1184938 D PFAM: Sel1-like repeat; KEGG: vch:VC2601 sodium-type flagellar protein MotX; Sel1 repeat-containing protein 1184240..1184938 Pseudoalteromonas atlantica T6c 4173495 YP_660574.1 CDS Patl_0994 NC_008228.1 1185078 1187510 D KEGG: ecc:c5263 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases ribonuclease R; PFAM: ribonuclease II RNA binding S1 Ribonuclease B, OB region-like; SMART: Cold shock protein; ribonuclease R 1185078..1187510 Pseudoalteromonas atlantica T6c 4173496 YP_660575.1 CDS Patl_0995 NC_008228.1 1187513 1188253 D Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 1187513..1188253 Pseudoalteromonas atlantica T6c 4173497 YP_660576.1 CDS Patl_0996 NC_008228.1 1188435 1188824 R KEGG: cps:CPS_3944 hypothetical protein; hypothetical protein complement(1188435..1188824) Pseudoalteromonas atlantica T6c 4173498 YP_660577.1 CDS Patl_0997 NC_008228.1 1188877 1189770 D PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: vpa:VP2427 putative transcriptional regulator, LysR family; LysR family transcriptional regulator 1188877..1189770 Pseudoalteromonas atlantica T6c 4173499 YP_660578.1 CDS Patl_0998 NC_008228.1 1189933 1191573 D PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO0355 AMP-binding protein; AMP-dependent synthetase and ligase 1189933..1191573 Pseudoalteromonas atlantica T6c 4173500 YP_660579.1 CDS Patl_0999 NC_008228.1 1192107 1192472 D TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: ilo:IL1906 ribosomal protein L14; 50S ribosomal protein L14 1192107..1192472 Pseudoalteromonas atlantica T6c 4173501 YP_660580.1 CDS rplX NC_008228.1 1192485 1192799 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 1192485..1192799 Pseudoalteromonas atlantica T6c 4173502 YP_660581.1 CDS rplE NC_008228.1 1192815 1193354 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 1192815..1193354 Pseudoalteromonas atlantica T6c 4173503 YP_660582.1 CDS Patl_1002 NC_008228.1 1193365 1193670 D PFAM: ribosomal protein S14; KEGG: plu:plu4713 30S ribosomal protein S14; 30S ribosomal protein S14 1193365..1193670 Pseudoalteromonas atlantica T6c 4173504 YP_660583.1 CDS rpsH NC_008228.1 1193683 1194075 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 1193683..1194075 Pseudoalteromonas atlantica T6c 4173505 YP_660584.1 CDS rplF NC_008228.1 1194086 1194619 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 1194086..1194619 Pseudoalteromonas atlantica T6c 4171980 YP_660585.1 CDS rplR NC_008228.1 1194632 1194985 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 1194632..1194985 Pseudoalteromonas atlantica T6c 4171981 YP_660586.1 CDS rpsE NC_008228.1 1194995 1195498 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 1194995..1195498 Pseudoalteromonas atlantica T6c 4171982 YP_660587.1 CDS rpmD NC_008228.1 1195499 1195687 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 1195499..1195687 Pseudoalteromonas atlantica T6c 4171983 YP_660588.1 CDS rplO NC_008228.1 1195691 1196125 D late assembly protein; 50S ribosomal protein L15 1195691..1196125 Pseudoalteromonas atlantica T6c 4171984 YP_660589.1 CDS secY NC_008228.1 1196131 1197450 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 1196131..1197450 Pseudoalteromonas atlantica T6c 4171985 YP_660590.1 CDS rpmJ NC_008228.1 1197475 1197591 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 1197475..1197591 Pseudoalteromonas atlantica T6c 4171986 YP_660591.1 CDS rpsM NC_008228.1 1197717 1198073 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 1197717..1198073 Pseudoalteromonas atlantica T6c 4171987 YP_660592.1 CDS Patl_1012 NC_008228.1 1198086 1198478 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 1198086..1198478 Pseudoalteromonas atlantica T6c 4171988 YP_660593.1 CDS rpsD NC_008228.1 1198503 1199123 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1198503..1199123 Pseudoalteromonas atlantica T6c 4171989 YP_660594.1 CDS Patl_1014 NC_008228.1 1199146 1200135 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 1199146..1200135 Pseudoalteromonas atlantica T6c 4171990 YP_660595.1 CDS rplQ NC_008228.1 1200173 1200574 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 1200173..1200574 Pseudoalteromonas atlantica T6c 4171991 YP_660596.1 CDS Patl_1016 NC_008228.1 1200965 1201738 R KEGG: ilo:IL1889 hypothetical protein; hypothetical protein complement(1200965..1201738) Pseudoalteromonas atlantica T6c 4171992 YP_660597.1 CDS Patl_1017 NC_008228.1 1208246 1208902 D PFAM: nitroreductase; KEGG: vpa:VPA1108 putative NAD(P)H-flavin reductase; nitroreductase 1208246..1208902 Pseudoalteromonas atlantica T6c 4173296 YP_660598.1 CDS Patl_1018 NC_008228.1 1208973 1209953 R TIGRFAM: formiminoglutamase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: pae:PA3175 formiminoglutamase; formiminoglutamase complement(1208973..1209953) Pseudoalteromonas atlantica T6c 4173297 YP_660599.1 CDS Patl_1019 NC_008228.1 1209937 1211160 R catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase complement(1209937..1211160) Pseudoalteromonas atlantica T6c 4173298 YP_660600.1 CDS Patl_1020 NC_008228.1 1211257 1211991 D TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: son:SO0096 histidine utilization repressor; histidine utilization repressor 1211257..1211991 Pseudoalteromonas atlantica T6c 4173299 YP_660601.1 CDS Patl_1021 NC_008228.1 1211975 1213675 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 1211975..1213675 Pseudoalteromonas atlantica T6c 4173300 YP_660602.1 CDS Patl_1022 NC_008228.1 1213678 1215207 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 1213678..1215207 Pseudoalteromonas atlantica T6c 4173301 YP_660603.1 CDS Patl_1023 NC_008228.1 1215304 1216086 D PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: pha:PSHAb0347 putative peptidyl-prolyl cis-trans isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase 1215304..1216086 Pseudoalteromonas atlantica T6c 4173302 YP_660604.1 CDS Patl_1024 NC_008228.1 1216153 1218024 R TIGRFAM: small GTP-binding protein GTP-binding protein TypA; PFAM: elongation factor G-like protein synthesis factor, GTP-binding elongation factor Tu, domain 2; KEGG: vpa:VP0122 BipA protein; GTP-binding protein TypA complement(1216153..1218024) Pseudoalteromonas atlantica T6c 4173303 YP_660605.1 CDS glnA NC_008228.1 1218364 1219773 D forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 1218364..1219773 Pseudoalteromonas atlantica T6c 4173304 YP_660606.1 CDS Patl_1026 NC_008228.1 1219943 1220497 D KEGG: son:SO4470 hypothetical protein; hypothetical protein 1219943..1220497 Pseudoalteromonas atlantica T6c 4173305 YP_660607.1 CDS Patl_1027 NC_008228.1 1220581 1221660 D PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold; SMART: PAS; KEGG: vvy:VV0197 nitrogen regulation protein NtrB; signal transduction histidine kinase, nitrogen specific, NtrB 1220581..1221660 Pseudoalteromonas atlantica T6c 4173306 YP_660608.1 CDS Patl_1028 NC_008228.1 1221657 1223063 D KEGG: son:SO4472 nitrogen regulation protein NR(I); TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver sigma-54 factor, interaction region helix-turn-helix, Fis-type ATPase associated with various cellular activities, AAA_5; SMART: ATPase; nitrogen metabolism transcriptional regulator, NtrC, Fis family 1221657..1223063 Pseudoalteromonas atlantica T6c 4173307 YP_660609.1 CDS Patl_1029 NC_008228.1 1223130 1224269 R PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: Hpt; KEGG: hch:HCH_04935 HD-GYP domain; metal dependent phosphohydrolase complement(1223130..1224269) Pseudoalteromonas atlantica T6c 4173308 YP_660610.1 CDS Patl_1030 NC_008228.1 1224455 1225174 D KEGG: pha:PSHAa2584 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 1224455..1225174 Pseudoalteromonas atlantica T6c 4173309 YP_660611.1 CDS Patl_1031 NC_008228.1 1225207 1225560 D PFAM: protein of unknown function DUF1260; KEGG: son:SO0568 hypothetical protein; hypothetical protein 1225207..1225560 Pseudoalteromonas atlantica T6c 4173310 YP_660612.1 CDS Patl_1032 NC_008228.1 1225682 1226419 D KEGG: son:SO4645 hypothetical protein; hypothetical protein 1225682..1226419 Pseudoalteromonas atlantica T6c 4173311 YP_660613.1 CDS Patl_1033 NC_008228.1 1226869 1231380 D PFAM: Endonuclease/exonuclease/phosphatase Endonuclease I; KEGG: cps:CPS_2634 extracellular ribonuclease/nuclease fusion protein; endonuclease I 1226869..1231380 Pseudoalteromonas atlantica T6c 4172819 YP_660614.1 CDS Patl_1034 NC_008228.1 1231418 1231969 D TIGRFAM: PEP motif putative anchor-like; PFAM: cellulosome anchoring protein, cohesin region; PEP domain-containing protein 1231418..1231969 Pseudoalteromonas atlantica T6c 4172820 YP_660615.1 CDS Patl_1035 NC_008228.1 1232391 1236815 D PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin protease-associated PA proteinase inhibitor I9, subtilisin propeptide; KEGG: son:SO1915 serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin 1232391..1236815 Pseudoalteromonas atlantica T6c 4172821 YP_660616.1 CDS Patl_1036 NC_008228.1 1237190 1238254 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: ilo:IL2305 HlyD family secretion protein; RND family efflux transporter MFP subunit 1237190..1238254 Pseudoalteromonas atlantica T6c 4172822 YP_660617.1 CDS Patl_1037 NC_008228.1 1238260 1241370 D PFAM: acriflavin resistance protein; KEGG: ilo:IL2304 RND family efflux transporter; acriflavin resistance protein 1238260..1241370 Pseudoalteromonas atlantica T6c 4172823 YP_660618.1 CDS Patl_1038 NC_008228.1 1241650 1243491 R TIGRFAM: RNA polymerase sigma factor RpoD; PFAM: sigma-70 region 1.1 sigma-70 region 3 sigma-70 region 2 sigma-70 region 4 sigma-70, non-essential region sigma-70 region 1.2; KEGG: son:SO1284 RNA polymerase sigma-70 factor; RNA polymerase sigma-70 subunit RpoD complement(1241650..1243491) Pseudoalteromonas atlantica T6c 4172824 YP_660619.1 CDS Patl_1039 NC_008228.1 1243637 1245403 R KEGG: cps:CPS_4335 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-type TOPRIM domain containing protein DNA primase DnaG, DnaB-binding DNA primase catalytic core-like; SMART: Toprim subdomain; DNA primase complement(1243637..1245403) Pseudoalteromonas atlantica T6c 4172825 YP_660620.1 CDS Patl_1040 NC_008228.1 1245558 1246001 R PFAM: GatB/Yqey; KEGG: vpa:VP0406 hypothetical protein; hypothetical protein complement(1245558..1246001) Pseudoalteromonas atlantica T6c 4172826 YP_660621.1 CDS rpsU NC_008228.1 1246086 1246301 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1246086..1246301) Pseudoalteromonas atlantica T6c 4172827 YP_660622.1 CDS Patl_1042 NC_008228.1 1246520 1247533 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 1246520..1247533 Pseudoalteromonas atlantica T6c 4172828 YP_660623.1 CDS Patl_1043 NC_008228.1 1247613 1248215 R PFAM: protein of unknown function DUF205; KEGG: ppr:PBPRA0435 putative membrane protein; hypothetical protein complement(1247613..1248215) Pseudoalteromonas atlantica T6c 4172829 YP_660624.1 CDS Patl_1044 NC_008228.1 1248292 1248651 D TIGRFAM: dihydroneopterin aldolase; KEGG: xcb:XC_3887 dihydroneopterin aldolase; dihydroneopterin aldolase 1248292..1248651 Pseudoalteromonas atlantica T6c 4172830 YP_660625.1 CDS Patl_1045 NC_008228.1 1248648 1249166 D TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: son:SO1292 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1248648..1249166 Pseudoalteromonas atlantica T6c 4172831 YP_660626.1 CDS Patl_1046 NC_008228.1 1249163 1249963 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 1249163..1249963 Pseudoalteromonas atlantica T6c 4172832 YP_660627.1 CDS Patl_1047 NC_008228.1 1249988 1250353 D PFAM: histidine triad (HIT) protein; KEGG: hch:HCH_00759 diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; histidine triad (HIT) protein 1249988..1250353 Pseudoalteromonas atlantica T6c 4172833 YP_660628.1 CDS Patl_1048 NC_008228.1 1250458 1252458 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: cps:CPS_1138 GGDEF/EAL domain protein; diguanylate cyclase/phosphodiesterase complement(1250458..1252458) Pseudoalteromonas atlantica T6c 4172834 YP_660629.1 CDS Patl_1049 NC_008228.1 1252499 1254187 R KEGG: pha:PSHAa2383 hypothetical protein; hypothetical protein complement(1252499..1254187) Pseudoalteromonas atlantica T6c 4172835 YP_660630.1 CDS Patl_1050 NC_008228.1 1254453 1255289 D KEGG: pha:PSHAa2382 signal transduction protein; putative signal transduction protein 1254453..1255289 Pseudoalteromonas atlantica T6c 4172836 YP_660631.1 CDS rdgC NC_008228.1 1255365 1256270 R Required for efficient pilin antigenic variation; recombination associated protein complement(1255365..1256270) Pseudoalteromonas atlantica T6c 4172837 YP_660632.1 CDS Patl_1052 NC_008228.1 1256370 1258109 R PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: ilo:IL2120 signal transduction histidine kinase; sensor signal transduction histidine kinase complement(1256370..1258109) Pseudoalteromonas atlantica T6c 4172838 YP_660633.1 CDS Patl_1053 NC_008228.1 1258355 1259044 D TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: vfi:VF1988 phosphate regulon transcriptional regulatory protein PhoB; two component transcriptional regulator 1258355..1259044 Pseudoalteromonas atlantica T6c 4172839 YP_660634.1 CDS Patl_1054 NC_008228.1 1259106 1260416 D PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold; KEGG: pha:PSHAa0598 phosphate regulon sensor protein PhoR; histidine kinase 1259106..1260416 Pseudoalteromonas atlantica T6c 4172840 YP_660635.1 CDS Patl_1055 NC_008228.1 1260653 1262254 D KEGG: pha:PSHAb0526 hypothetical protein; hypothetical protein 1260653..1262254 Pseudoalteromonas atlantica T6c 4172841 YP_660636.1 CDS Patl_1056 NC_008228.1 1262322 1264988 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ilo:IL0619 outer membrane protein; TonB-dependent receptor 1262322..1264988 Pseudoalteromonas atlantica T6c 4172842 YP_660637.1 CDS Patl_1057 NC_008228.1 1265043 1265750 R PFAM: lipase, class 2; KEGG: cel:K12B6.3 Hypothetical protein K12B6.3; lipase, class 2 complement(1265043..1265750) Pseudoalteromonas atlantica T6c 4172843 YP_660638.1 CDS Patl_1058 NC_008228.1 1265921 1267972 D PFAM: iron permease FTR1; KEGG: ilo:IL0111 high-affinity Fe2+/Pb2+ permease; iron permease FTR1 1265921..1267972 Pseudoalteromonas atlantica T6c 4172844 YP_660639.1 CDS Patl_1059 NC_008228.1 1268066 1270399 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC1970 TonB-dependent receptor; TonB-dependent receptor complement(1268066..1270399) Pseudoalteromonas atlantica T6c 4172845 YP_660640.1 CDS Patl_1060 NC_008228.1 1270925 1271695 D KEGG: pha:PSHAb0520 conserved protein of unknown function ; putative secreted protein; hypothetical protein 1270925..1271695 Pseudoalteromonas atlantica T6c 4172846 YP_660641.1 CDS Patl_1061 NC_008228.1 1271703 1273112 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: ilo:IL2118 TonB system biopolymer transport component; MotA/TolQ/ExbB proton channel 1271703..1273112 Pseudoalteromonas atlantica T6c 4172847 YP_660642.1 CDS Patl_1062 NC_008228.1 1273124 1273645 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: ilo:IL2117 TonB system biopolymer transport component; MotA/TolQ/ExbB proton channel 1273124..1273645 Pseudoalteromonas atlantica T6c 4172848 YP_660643.1 CDS Patl_1063 NC_008228.1 1273676 1274083 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ilo:IL2116 biopolymer transport protein; biopolymer transport protein ExbD/TolR 1273676..1274083 Pseudoalteromonas atlantica T6c 4172849 YP_660644.1 CDS Patl_1064 NC_008228.1 1274087 1274695 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pha:PSHAb0524 putative TonB2 protein; TonB family protein 1274087..1274695 Pseudoalteromonas atlantica T6c 4172850 YP_660645.1 CDS Patl_1065 NC_008228.1 1274707 1276050 D PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: pha:PSHAb0525 putative unknown membrane associated protein; hypothetical protein 1274707..1276050 Pseudoalteromonas atlantica T6c 4172851 YP_660646.1 CDS Patl_1066 NC_008228.1 1276355 1276924 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: cps:CPS_4717 alkyl hydroperoxide reductase, subunit C; alkyl hydroperoxide reductase 1276355..1276924 Pseudoalteromonas atlantica T6c 4172852 YP_660647.1 CDS Patl_1067 NC_008228.1 1277044 1278651 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO0956 alkyl hydroperoxide reductase, F subunit; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1277044..1278651 Pseudoalteromonas atlantica T6c 4172853 YP_660648.1 CDS Patl_1068 NC_008228.1 1279154 1279744 D hypothetical protein 1279154..1279744 Pseudoalteromonas atlantica T6c 4172854 YP_660649.1 CDS Patl_1069 NC_008228.1 1279741 1282479 D PFAM: glycoside hydrolase, family 8; KEGG: bha:BH2105 xylanase Y; glycoside hydrolase 1279741..1282479 Pseudoalteromonas atlantica T6c 4172855 YP_660650.1 CDS Patl_1070 NC_008228.1 1282626 1284035 R PFAM: sugar transferase; KEGG: vvu:VV21582 sugar transferase involved in lipopolysaccharide synthesis; sugar transferase complement(1282626..1284035) Pseudoalteromonas atlantica T6c 4172856 YP_660651.1 CDS Patl_1071 NC_008228.1 1284958 1286100 D KEGG: vch:VC0935 hypothetical protein; hypothetical protein 1284958..1286100 Pseudoalteromonas atlantica T6c 4172857 YP_660652.1 CDS Patl_1072 NC_008228.1 1286124 1286660 D PFAM: polysaccharide export protein; KEGG: hch:HCH_04680 periplasmic protein involved in polysaccharide export; polysaccharide export protein 1286124..1286660 Pseudoalteromonas atlantica T6c 4172611 YP_660653.1 CDS Patl_1073 NC_008228.1 1286678 1288945 D PFAM: lipopolysaccharide biosynthesis; KEGG: pha:PSHAa1780 exopolysaccharide biosynthesis protein; protein-tyrosine kinase 1286678..1288945 Pseudoalteromonas atlantica T6c 4172612 YP_660654.1 CDS Patl_1074 NC_008228.1 1288942 1289670 D PFAM: PHP-like; KEGG: pha:PSHAa1779 capsular polysaccharide biosynthesis, CapC; PHP-like protein 1288942..1289670 Pseudoalteromonas atlantica T6c 4172613 YP_660655.1 CDS Patl_1075 NC_008228.1 1289661 1290404 D KEGG: vch:VC0938 hypothetical protein; hypothetical protein 1289661..1290404 Pseudoalteromonas atlantica T6c 4172614 YP_660656.1 CDS Patl_1076 NC_008228.1 1290461 1290865 R KEGG: vvu:VV12311 hypothetical protein; hypothetical protein complement(1290461..1290865) Pseudoalteromonas atlantica T6c 4172615 YP_660657.1 CDS Patl_1077 NC_008228.1 1290862 1292163 R PFAM: O-antigen polymerase; KEGG: vch:VC0931 hypothetical protein; O-antigen polymerase complement(1290862..1292163) Pseudoalteromonas atlantica T6c 4172616 YP_660658.1 CDS Patl_1078 NC_008228.1 1292378 1293022 R KEGG: vch:VC0932 hypothetical protein; hypothetical protein complement(1292378..1293022) Pseudoalteromonas atlantica T6c 4172617 YP_660659.1 CDS Patl_1079 NC_008228.1 1293262 1295253 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: tcx:Tcr_0208 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains); diguanylate cyclase/phosphodiesterase complement(1293262..1295253) Pseudoalteromonas atlantica T6c 4172618 YP_660660.1 CDS Patl_1080 NC_008228.1 1295275 1295922 R KEGG: hch:HCH_03939 predicted periplasmic protein; hypothetical protein complement(1295275..1295922) Pseudoalteromonas atlantica T6c 4172619 YP_660661.1 CDS Patl_1081 NC_008228.1 1296393 1298954 D KEGG: hch:HCH_04697 hypothetical protein; hypothetical protein 1296393..1298954 Pseudoalteromonas atlantica T6c 4172620 YP_660662.1 CDS Patl_1082 NC_008228.1 1299125 1299760 D hypothetical protein 1299125..1299760 Pseudoalteromonas atlantica T6c 4172621 YP_660663.1 CDS Patl_1083 NC_008228.1 1299944 1301398 R PFAM: polysaccharide biosynthesis protein; KEGG: gvi:gll1781 probable polysaccharide transport protein; polysaccharide biosynthesis protein complement(1299944..1301398) Pseudoalteromonas atlantica T6c 4172622 YP_660664.1 CDS Patl_1084 NC_008228.1 1301914 1303821 D PFAM: acyltransferase 3; KEGG: rsp:RSP_2692 acyltransferase domain (LPS); acyltransferase 3 1301914..1303821 Pseudoalteromonas atlantica T6c 4172623 YP_660665.1 CDS Patl_1085 NC_008228.1 1303915 1304985 R PFAM: glycosyl transferase, group 1; KEGG: sab:SAB0901 probable glycosyl transferase; group 1 glycosyl transferase complement(1303915..1304985) Pseudoalteromonas atlantica T6c 4172624 YP_660666.1 CDS Patl_1086 NC_008228.1 1305039 1306010 R KEGG: bfs:BF4300 putative exopolysaccharide biosynthesis protein; hypothetical protein complement(1305039..1306010) Pseudoalteromonas atlantica T6c 4172625 YP_660667.1 CDS Patl_1087 NC_008228.1 1306704 1307696 D PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: ppr:PBPRA0207 putative nucleotide sugar epimerase; NAD-dependent epimerase/dehydratase 1306704..1307696 Pseudoalteromonas atlantica T6c 4172626 YP_660668.1 CDS Patl_1088 NC_008228.1 1307943 1308770 D TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: hch:HCH_04683 glycosyltransferase; WecB/TagA/CpsF family glycosyl transferase 1307943..1308770 Pseudoalteromonas atlantica T6c 4172627 YP_660669.1 CDS Patl_1089 NC_008228.1 1308780 1309871 D PFAM: glycosyl transferase, group 1; KEGG: hch:HCH_04683 glycosyltransferase; group 1 glycosyl transferase 1308780..1309871 Pseudoalteromonas atlantica T6c 4172628 YP_660670.1 CDS Patl_1090 NC_008228.1 1309875 1311002 D PFAM: glycosyl transferase, group 1; KEGG: hch:HCH_04684 glycosyltransferase; group 1 glycosyl transferase 1309875..1311002 Pseudoalteromonas atlantica T6c 4172629 YP_660671.1 CDS Patl_1091 NC_008228.1 1311017 1312306 D KEGG: hch:HCH_04685 exopolysaccharide production protein; exopolysaccharide production protein 1311017..1312306 Pseudoalteromonas atlantica T6c 4172630 YP_660672.1 CDS Patl_1092 NC_008228.1 1312303 1313250 D PFAM: glycosyl transferase, family 2; KEGG: hch:HCH_04693 glycosyltransferase involved in cell wall biogenesis; glycosyl transferase family protein 1312303..1313250 Pseudoalteromonas atlantica T6c 4173621 YP_660673.1 CDS Patl_1093 NC_008228.1 1313415 1314410 R PFAM: acyltransferase 3; KEGG: rpa:RPA0536 acyltransferase 3 family; acyltransferase 3 complement(1313415..1314410) Pseudoalteromonas atlantica T6c 4173622 YP_660674.1 CDS Patl_1094 NC_008228.1 1315152 1315976 D KEGG: xoo:XOO3169 GumL; GumL protein 1315152..1315976 Pseudoalteromonas atlantica T6c 4173623 YP_660675.1 CDS Patl_1095 NC_008228.1 1316024 1317169 D PFAM: acyltransferase 3; KEGG: atc:AGR_C_3040 hypothetical protein; acyltransferase 3 1316024..1317169 Pseudoalteromonas atlantica T6c 4173624 YP_660676.1 CDS Patl_1096 NC_008228.1 1317430 1319274 R PFAM: acyltransferase 3; KEGG: par:Psyc_0638 possible acyltransferase family protein; acyltransferase 3 complement(1317430..1319274) Pseudoalteromonas atlantica T6c 4173625 YP_660677.1 CDS Patl_1097 NC_008228.1 1319374 1320021 R KEGG: sye:Syncc9902_0044 hypothetical protein; hypothetical protein complement(1319374..1320021) Pseudoalteromonas atlantica T6c 4173626 YP_660678.1 CDS Patl_1098 NC_008228.1 1320773 1321690 D hypothetical protein 1320773..1321690 Pseudoalteromonas atlantica T6c 4173627 YP_660679.1 CDS Patl_1099 NC_008228.1 1321970 1322884 D hypothetical protein 1321970..1322884 Pseudoalteromonas atlantica T6c 4173628 YP_660680.1 CDS Patl_1100 NC_008228.1 1323322 1324146 D KEGG: xcv:XCV2777 xanthan biosynthesis pyruvyltransferase GumL; xanthan biosynthesis pyruvyltransferase GumL 1323322..1324146 Pseudoalteromonas atlantica T6c 4173629 YP_660681.1 CDS Patl_1101 NC_008228.1 1324578 1326056 D KEGG: nar:Saro_0670 hypothetical protein; hypothetical protein 1324578..1326056 Pseudoalteromonas atlantica T6c 4173630 YP_660682.1 CDS Patl_1102 NC_008228.1 1326404 1328806 D KEGG: pha:PSHAa0464 hypothetical protein; hypothetical protein 1326404..1328806 Pseudoalteromonas atlantica T6c 4173631 YP_660683.1 CDS Patl_1103 NC_008228.1 1329011 1329430 R KEGG: cps:CPS_4685 hypothetical protein; hypothetical protein complement(1329011..1329430) Pseudoalteromonas atlantica T6c 4173632 YP_660684.1 CDS Patl_1104 NC_008228.1 1329512 1330879 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(1329512..1330879) Pseudoalteromonas atlantica T6c 4173633 YP_660685.1 CDS Patl_1105 NC_008228.1 1331029 1332441 R KEGG: dar:Daro_1852 hypothetical protein; hypothetical protein complement(1331029..1332441) Pseudoalteromonas atlantica T6c 4173634 YP_660686.1 CDS Patl_1106 NC_008228.1 1332556 1333830 R PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: zmo:ZMO1604 phosphodiesterase-nucleotide pyrophosphatase; phosphodiesterase I complement(1332556..1333830) Pseudoalteromonas atlantica T6c 4173635 YP_660687.1 CDS Patl_1107 NC_008228.1 1334429 1336039 D PFAM: Catalase-like; KEGG: pae:PA4613 catalase; catalase 1334429..1336039 Pseudoalteromonas atlantica T6c 4173636 YP_660688.1 CDS Patl_1108 NC_008228.1 1336224 1336817 D PFAM: Ankyrin; KEGG: pfl:PFL_5357 ankyrin domain protein; ankyrin 1336224..1336817 Pseudoalteromonas atlantica T6c 4173637 YP_660689.1 CDS Patl_1109 NC_008228.1 1337108 1338571 D KEGG: pha:PSHAb0210 cold-shock regulated carbon starvation protein A; cold-shock regulated carbon starvation protein A 1337108..1338571 Pseudoalteromonas atlantica T6c 4173638 YP_660690.1 CDS Patl_1110 NC_008228.1 1338748 1340625 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC1750 TonB-dependent receptor; TonB-dependent receptor complement(1338748..1340625) Pseudoalteromonas atlantica T6c 4173639 YP_660691.1 CDS Patl_1111 NC_008228.1 1341544 1342527 R PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAb0050 hypothetical protein; hypothetical protein complement(1341544..1342527) Pseudoalteromonas atlantica T6c 4172286 YP_660692.1 CDS Patl_1112 NC_008228.1 1342810 1344117 R PFAM: DSBA oxidoreductase; KEGG: cps:CPS_2425 DsbA-like thioredoxin domain protein; DSBA oxidoreductase complement(1342810..1344117) Pseudoalteromonas atlantica T6c 4172287 YP_660693.1 CDS Patl_1113 NC_008228.1 1344290 1345309 D PFAM: helix-turn-helix, AraC type; KEGG: pae:PA0831 transcriptional regulator OruR; AraC family transcriptional regulator 1344290..1345309 Pseudoalteromonas atlantica T6c 4172288 YP_660694.1 CDS Patl_1114 NC_008228.1 1345397 1346794 R PFAM: biotin/lipoyl attachment catalytic domain of components of various dehydrogenase complexes E3 binding; KEGG: bur:Bcep18194_A5442 dihydrolipoamide acetyltransferase; dehydrogenase catalytic domain-containing protein complement(1345397..1346794) Pseudoalteromonas atlantica T6c 4172289 YP_660695.1 CDS Patl_1115 NC_008228.1 1346797 1349496 R paralogs to the E1 component of pyruvate dehydrogenase subunit E1; 2-oxoacid dehydrogenase subunit E1 complement(1346797..1349496) Pseudoalteromonas atlantica T6c 4172290 YP_660696.1 CDS Patl_1116 NC_008228.1 1350205 1351659 D hypothetical protein 1350205..1351659 Pseudoalteromonas atlantica T6c 4172291 YP_660697.1 CDS Patl_1117 NC_008228.1 1352175 1354994 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: xcb:XC_1546 TonB-dependent receptor; TonB-dependent receptor 1352175..1354994 Pseudoalteromonas atlantica T6c 4172292 YP_660698.1 CDS Patl_1118 NC_008228.1 1355270 1356508 D PFAM: Citrate carrier protein; KEGG: stm:STM0057 putative citrate-sodium symport; citrate carrier protein 1355270..1356508 Pseudoalteromonas atlantica T6c 4172293 YP_660699.1 CDS Patl_1119 NC_008228.1 1356525 1357883 D KEGG: chy:CHY_0583 hypothetical protein; hypothetical protein 1356525..1357883 Pseudoalteromonas atlantica T6c 4172294 YP_660700.1 CDS Patl_1120 NC_008228.1 1357904 1358227 D KEGG: ecs:ECs0759 hypothetical protein; hypothetical protein 1357904..1358227 Pseudoalteromonas atlantica T6c 4172295 YP_660701.1 CDS Patl_1121 NC_008228.1 1358477 1359487 D PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: reu:Reut_A3085 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 1358477..1359487 Pseudoalteromonas atlantica T6c 4172296 YP_660702.1 CDS Patl_1122 NC_008228.1 1359562 1360017 R PFAM: regulatory protein, MarR; KEGG: bja:blr2331 transcriptional regulatory protein; MarR family transcriptional regulator complement(1359562..1360017) Pseudoalteromonas atlantica T6c 4172297 YP_660703.1 CDS Patl_1123 NC_008228.1 1360350 1361663 R KEGG: pha:PSHAa2169 fumarylacetoacetase (fumarylacetoacetate hydrolase) (beta-diketonase)(FAA); TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetase complement(1360350..1361663) Pseudoalteromonas atlantica T6c 4172298 YP_660704.1 CDS Patl_1124 NC_008228.1 1361729 1362259 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_4358 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(1361729..1362259) Pseudoalteromonas atlantica T6c 4172299 YP_660705.1 CDS Patl_1125 NC_008228.1 1362333 1363409 R KEGG: nar:Saro_0597 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase complement(1362333..1363409) Pseudoalteromonas atlantica T6c 4172300 YP_660706.1 CDS Patl_1126 NC_008228.1 1363771 1364238 R PFAM: protein of unknown function DUF1348; KEGG: pfo:Pfl_2878 protein of unknown function DUF1348; hypothetical protein complement(1363771..1364238) Pseudoalteromonas atlantica T6c 4172301 YP_660707.1 CDS Patl_1127 NC_008228.1 1364347 1366482 R PFAM: ferredoxin oxidoreductase FAD/NAD(P)-binding Oxidoreductase FAD-binding region pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: pfo:Pfl_5689 pyridoxamine 5'-phosphate oxidase-like, FMN-binding; oxidoreductase FAD-binding region complement(1364347..1366482) Pseudoalteromonas atlantica T6c 4172302 YP_660708.1 CDS Patl_1128 NC_008228.1 1366576 1367196 R PFAM: glutathione S-transferase-like; KEGG: ret:RHE_CH01278 glutathione S-transferase protein; glutathione S-transferase-like protein complement(1366576..1367196) Pseudoalteromonas atlantica T6c 4172303 YP_660709.1 CDS Patl_1129 NC_008228.1 1367374 1368270 D PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: son:SOA0165 transcriptional regulator, LysR family; LysR family transcriptional regulator 1367374..1368270 Pseudoalteromonas atlantica T6c 4172304 YP_660710.1 CDS Patl_1130 NC_008228.1 1368280 1369332 R PFAM: aminotransferase, class I and II; KEGG: cps:CPS_1142 CobC protein; class I and II aminotransferase complement(1368280..1369332) Pseudoalteromonas atlantica T6c 4172305 YP_660711.1 CDS Patl_1131 NC_008228.1 1369472 1370527 R TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: cps:CPS_1143 putative cobalamin biosynthesis protein D; cobalamin biosynthesis protein CobD complement(1369472..1370527) Pseudoalteromonas atlantica T6c 4173180 YP_660712.1 CDS Patl_1132 NC_008228.1 1370550 1371275 R PFAM: Phosphoglycerate mutase; KEGG: cps:CPS_1144 phosphoglycerate mutase family protein; phosphoglycerate mutase complement(1370550..1371275) Pseudoalteromonas atlantica T6c 4173181 YP_660713.1 CDS Patl_1133 NC_008228.1 1371290 1372339 R PFAM: periplasmic binding protein; KEGG: cps:CPS_1163 putative vitamin B12 transport protein BtuF; periplasmic binding protein complement(1371290..1372339) Pseudoalteromonas atlantica T6c 4173182 YP_660714.1 CDS Patl_1134 NC_008228.1 1372339 1372971 R catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase complement(1372339..1372971) Pseudoalteromonas atlantica T6c 4173183 YP_660715.1 CDS Patl_1135 NC_008228.1 1372976 1374580 R TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid a,c-diamide synthase CobB/CobQ-like glutamine amidotransferase; KEGG: vpa:VPA0932 cobyric acid synthase; cobyric acid synthase CobQ complement(1372976..1374580) Pseudoalteromonas atlantica T6c 4173184 YP_660716.1 CDS Patl_1136 NC_008228.1 1374577 1375284 R PFAM: Phosphoglycerate mutase; KEGG: vpa:VP1307 putative alpha-ribazole-5'-phosphate phosphatase CobC; phosphoglycerate mutase complement(1374577..1375284) Pseudoalteromonas atlantica T6c 4173185 YP_660717.1 CDS Patl_1137 NC_008228.1 1375326 1375880 R PFAM: cobalbumin biosynthesis enzyme; KEGG: cps:CPS_3657 bifunctional cobalamin biosynthesis protein CobP; cobalbumin biosynthesis protein complement(1375326..1375880) Pseudoalteromonas atlantica T6c 4173186 YP_660718.1 CDS Patl_1138 NC_008228.1 1375966 1376775 R TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: vvy:VV1475 cobalamin-5-phosphate synthase; cobalamin 5'-phosphate synthase complement(1375966..1376775) Pseudoalteromonas atlantica T6c 4173187 YP_660719.1 CDS Patl_1139 NC_008228.1 1376811 1377944 R PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: vpa:VP1304 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase complement(1376811..1377944) Pseudoalteromonas atlantica T6c 4173188 YP_660720.1 CDS Patl_1140 NC_008228.1 1378183 1379205 R PFAM: transport system permease protein; KEGG: cps:CPS_1165 putative vitamin B12 transport system permease protein BtuC; transport system permease complement(1378183..1379205) Pseudoalteromonas atlantica T6c 4173189 YP_660721.1 CDS Patl_1141 NC_008228.1 1379202 1380113 R PFAM: ABC transporter related; SMART: ATPase; KEGG: cps:CPS_1166 putative vitamin B12 transport ATP-binding protein BtuD; ABC transporter-like protein complement(1379202..1380113) Pseudoalteromonas atlantica T6c 4173190 YP_660722.1 CDS Patl_1142 NC_008228.1 1380640 1382775 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: xcb:XC_2846 iron receptor; TonB-dependent siderophore receptor 1380640..1382775 Pseudoalteromonas atlantica T6c 4173192 YP_660723.1 CDS Patl_1143 NC_008228.1 1382922 1384055 D PFAM: PepSY-associated TM helix; KEGG: ilo:IL2512 uncharacterized iron-regulated membrane protein; PepSY-associated TM helix-containing protein 1382922..1384055 Pseudoalteromonas atlantica T6c 4173193 YP_660724.1 CDS Patl_1144 NC_008228.1 1384191 1384664 R PFAM: Stress responsive alpha-beta barrel; KEGG: ccr:CC2267 hypothetical protein; stress responsive alpha-beta barrel complement(1384191..1384664) Pseudoalteromonas atlantica T6c 4173194 YP_660725.1 CDS Patl_1145 NC_008228.1 1385553 1385882 D KEGG: pha:PSHAa2270 hypothetical protein; hypothetical protein 1385553..1385882 Pseudoalteromonas atlantica T6c 4173196 YP_660726.1 CDS Patl_1146 NC_008228.1 1386000 1386665 R hypothetical protein complement(1386000..1386665) Pseudoalteromonas atlantica T6c 4173197 YP_660727.1 CDS Patl_1147 NC_008228.1 1386943 1387257 D KEGG: cps:CPS_4299 hypothetical protein; hypothetical protein 1386943..1387257 Pseudoalteromonas atlantica T6c 4173198 YP_660728.1 CDS Patl_1148 NC_008228.1 1387527 1390550 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: xcb:XC_4327 Oar protein; TonB-dependent receptor, plug 1387527..1390550 Pseudoalteromonas atlantica T6c 4173199 YP_660729.1 CDS Patl_1149 NC_008228.1 1390989 1391708 D PFAM: response regulator receiver LytTr DNA-binding region; KEGG: pha:PSHAa1405 response regulator in two-component regulatory system; response regulator receiver protein 1390989..1391708 Pseudoalteromonas atlantica T6c 4173200 YP_660730.1 CDS Patl_1150 NC_008228.1 1391736 1392875 D PFAM: histidine kinase internal region; KEGG: pha:PSHAa1404 hypothetical protein; signal transduction histidine kinase LytS 1391736..1392875 Pseudoalteromonas atlantica T6c 4173201 YP_660731.1 CDS Patl_1151 NC_008228.1 1392872 1393702 D PFAM: response regulator receiver LytTr DNA-binding region; KEGG: ilo:IL1261 response regulator of the LytR/AlgR family; response regulator receiver protein 1392872..1393702 Pseudoalteromonas atlantica T6c 4173202 YP_660732.1 CDS Patl_1152 NC_008228.1 1393935 1394897 D KEGG: yps:YPTB3207 glutathione synthetase; TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase-like glutathione synthetase, ATP-binding RimK-like ATP-grasp; glutathione synthetase 1393935..1394897 Pseudoalteromonas atlantica T6c 4173203 YP_660733.1 CDS Patl_1153 NC_008228.1 1394887 1395483 D PFAM: protein of unknown function DUF179; KEGG: pha:PSHAa2600 hypothetical protein; hypothetical protein 1394887..1395483 Pseudoalteromonas atlantica T6c 4173204 YP_660734.1 CDS Patl_1154 NC_008228.1 1395566 1395997 D PFAM: Holliday junction resolvase YqgF; SMART: Resolvase, RNase H-like fold; KEGG: pha:PSHAa2601 Holliday junction resolvase-like protein; Holliday junction resolvase YqgF 1395566..1395997 Pseudoalteromonas atlantica T6c 4173205 YP_660735.1 CDS Patl_1155 NC_008228.1 1396388 1396801 D PFAM: Redoxin Thioredoxin domain; KEGG: cps:CPS_3822 putative thioredoxin; redoxin 1396388..1396801 Pseudoalteromonas atlantica T6c 4173206 YP_660736.1 CDS Patl_1156 NC_008228.1 1396935 1398164 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 1396935..1398164 Pseudoalteromonas atlantica T6c 4173207 YP_660737.1 CDS Patl_1157 NC_008228.1 1398289 1399035 R PFAM: helix-turn-helix, AraC type PAS fold-4; KEGG: rba:RB9879 probable transcription regulator; AraC family transcriptional regulator complement(1398289..1399035) Pseudoalteromonas atlantica T6c 4173208 YP_660738.1 CDS Patl_1158 NC_008228.1 1399774 1400535 D PFAM: Xylose isomerase-like TIM barrel; KEGG: cps:CPS_3701 hypothetical protein; xylose isomerase-like TIM barrel domain-containing protein 1399774..1400535 Pseudoalteromonas atlantica T6c 4173209 YP_660739.1 CDS Patl_1159 NC_008228.1 1400604 1401227 R KEGG: hch:HCH_03840 predicted phosphoribosyltransferase; phosphoribosyltransferase complement(1400604..1401227) Pseudoalteromonas atlantica T6c 4173210 YP_660740.1 CDS Patl_1160 NC_008228.1 1401333 1401899 D PFAM: phosphoribosyltransferase; KEGG: hch:HCH_03840 predicted phosphoribosyltransferase; phosphoribosyltransferase 1401333..1401899 Pseudoalteromonas atlantica T6c 4173211 YP_660741.1 CDS Patl_1161 NC_008228.1 1402021 1402713 R PFAM: protein of unknown function DUF480; KEGG: son:SO1867 hypothetical protein; hypothetical protein complement(1402021..1402713) Pseudoalteromonas atlantica T6c 4173212 YP_660742.1 CDS Patl_1162 NC_008228.1 1402816 1403736 D PFAM: histone deacetylase superfamily; KEGG: cps:CPS_3373 histone deacetylase family protein; histone deacetylase superfamily protein 1402816..1403736 Pseudoalteromonas atlantica T6c 4173213 YP_660743.1 CDS Patl_1163 NC_008228.1 1403750 1403920 R KEGG: pha:PSHAa1267 hypothetical protein; hypothetical protein complement(1403750..1403920) Pseudoalteromonas atlantica T6c 4173214 YP_660744.1 CDS Patl_1164 NC_008228.1 1404126 1404761 R PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: ade:Adeh_3603 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(1404126..1404761) Pseudoalteromonas atlantica T6c 4173215 YP_660745.1 CDS Patl_1165 NC_008228.1 1404989 1405546 R KEGG: ppr:PBPRB0391 conserved hypothetical protein; hypothetical protein complement(1404989..1405546) Pseudoalteromonas atlantica T6c 4173216 YP_660746.1 CDS Patl_1166 NC_008228.1 1405719 1407476 D TIGRFAM: potassium efflux system protein; PFAM: TrkA-N sodium/hydrogen exchanger; KEGG: son:SO1481 glutathione-regulated potassium-efflux system protein; potassium efflux system protein 1405719..1407476 Pseudoalteromonas atlantica T6c 4172572 YP_660747.1 CDS Patl_1167 NC_008228.1 1407480 1409090 R KEGG: cps:CPS_5028 hypothetical protein; hypothetical protein complement(1407480..1409090) Pseudoalteromonas atlantica T6c 4172573 YP_660748.1 CDS Patl_1168 NC_008228.1 1409090 1409989 R KEGG: cps:CPS_5027 putative exopolysaccharide biosynthesis protein; protein-tyrosine kinase complement(1409090..1409989) Pseudoalteromonas atlantica T6c 4172574 YP_660749.1 CDS Patl_1169 NC_008228.1 1409986 1411569 R PFAM: lipopolysaccharide biosynthesis; KEGG: cps:CPS_5026 chain length determinant family protein; lipopolysaccharide biosynthesis protein complement(1409986..1411569) Pseudoalteromonas atlantica T6c 4172575 YP_660750.1 CDS Patl_1170 NC_008228.1 1411599 1412234 R PFAM: polysaccharide export protein; KEGG: cps:CPS_5025 polysaccharide biosynthesis/export protein; polysaccharide export protein complement(1411599..1412234) Pseudoalteromonas atlantica T6c 4172576 YP_660751.1 CDS Patl_1171 NC_008228.1 1412408 1413820 D PFAM: sugar transferase; KEGG: cps:CPS_5023 bacterial sugar transferase domain protein; sugar transferase 1412408..1413820 Pseudoalteromonas atlantica T6c 4172577 YP_660752.1 CDS Patl_1172 NC_008228.1 1413823 1414668 D PFAM: polysaccharide deacetylase; KEGG: eba:ebA4258 polysaccharide deacetylase; polysaccharide deacetylase 1413823..1414668 Pseudoalteromonas atlantica T6c 4172578 YP_660753.1 CDS Patl_1173 NC_008228.1 1414690 1416183 D TIGRFAM: eight transmembrane protein EpsH; KEGG: neu:NE1797 hypothetical protein; transmembrane protein EpsH 1414690..1416183 Pseudoalteromonas atlantica T6c 4172579 YP_660754.1 CDS Patl_1174 NC_008228.1 1416195 1417094 D TIGRFAM: methyltransferase FkbM family; KEGG: sso:SSO1901 hypothetical protein; FkbM family methyltransferase 1416195..1417094 Pseudoalteromonas atlantica T6c 4172580 YP_660755.1 CDS Patl_1175 NC_008228.1 1417112 1418128 D PFAM: acyltransferase 3; KEGG: cps:CPS_5002 acyltransferase family protein; acyltransferase 3 1417112..1418128 Pseudoalteromonas atlantica T6c 4172581 YP_660756.1 CDS Patl_1176 NC_008228.1 1418164 1419297 R hypothetical protein complement(1418164..1419297) Pseudoalteromonas atlantica T6c 4172582 YP_660757.1 CDS Patl_1177 NC_008228.1 1419326 1419907 R KEGG: dvu:DVUA0053 hypothetical protein; hypothetical protein complement(1419326..1419907) Pseudoalteromonas atlantica T6c 4172583 YP_660758.1 CDS Patl_1178 NC_008228.1 1419904 1421034 R PFAM: glycosyl transferase, group 1; KEGG: dar:Daro_2405 glycosyl transferase, group 1; group 1 glycosyl transferase complement(1419904..1421034) Pseudoalteromonas atlantica T6c 4172584 YP_660759.1 CDS Patl_1179 NC_008228.1 1421533 1422459 D PFAM: glycosyl transferase, family 2; KEGG: rru:Rru_A0938 glycosyl transferase, family 2; glycosyl transferase family protein 1421533..1422459 Pseudoalteromonas atlantica T6c 4172585 YP_660760.1 CDS Patl_1180 NC_008228.1 1422592 1423407 D PFAM: sulfotransferase; KEGG: hch:HCH_06158 putative sulfotransferase protein; sulfotransferase 1422592..1423407 Pseudoalteromonas atlantica T6c 4172586 YP_660761.1 CDS Patl_1181 NC_008228.1 1423440 1424645 D hypothetical protein 1423440..1424645 Pseudoalteromonas atlantica T6c 4172587 YP_660762.1 CDS Patl_1182 NC_008228.1 1424638 1424982 R hypothetical protein complement(1424638..1424982) Pseudoalteromonas atlantica T6c 4172588 YP_660763.1 CDS Patl_1183 NC_008228.1 1424979 1426571 R KEGG: jan:Jann_4268 FAD dependent oxidoreductase; choline dehydrogenase-like flavoprotein complement(1424979..1426571) Pseudoalteromonas atlantica T6c 4172589 YP_660764.1 CDS Patl_1184 NC_008228.1 1426568 1427806 R PFAM: O-antigen polymerase; KEGG: vpa:VP1464 putative membrane protein of ExoQ family, involved in exopolysaccharide production; O-antigen polymerase complement(1426568..1427806) Pseudoalteromonas atlantica T6c 4172590 YP_660765.1 CDS Patl_1185 NC_008228.1 1427974 1429032 R PFAM: acyltransferase 3; KEGG: cps:CPS_5002 acyltransferase family protein; acyltransferase 3 complement(1427974..1429032) Pseudoalteromonas atlantica T6c 4172591 YP_660766.1 CDS Patl_1186 NC_008228.1 1429176 1430093 R PFAM: glycosyl transferase, family 2; KEGG: pfu:PF1359 glycosyl transferase; glycosyl transferase family protein complement(1429176..1430093) Pseudoalteromonas atlantica T6c 4172592 YP_660767.1 CDS Patl_1187 NC_008228.1 1430096 1431562 R PFAM: polysaccharide biosynthesis protein; KEGG: noc:Noc_1942 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(1430096..1431562) Pseudoalteromonas atlantica T6c 4172593 YP_660768.1 CDS Patl_1188 NC_008228.1 1431559 1432641 R PFAM: glycosyl transferase, group 1; KEGG: xoo:XOO3172 GumI; group 1 glycosyl transferase complement(1431559..1432641) Pseudoalteromonas atlantica T6c 4172594 YP_660769.1 CDS Patl_1189 NC_008228.1 1432685 1434565 R hypothetical protein complement(1432685..1434565) Pseudoalteromonas atlantica T6c 4172595 YP_660770.1 CDS Patl_1190 NC_008228.1 1434660 1436132 R PFAM: polysaccharide biosynthesis protein; KEGG: ret:RHE_CH03216 exopolysaccharide polymerization and/or export protein; polysaccharide biosynthesis protein complement(1434660..1436132) Pseudoalteromonas atlantica T6c 4172596 YP_660771.1 CDS Patl_1191 NC_008228.1 1436158 1437312 R PFAM: glycosyl transferase, group 1; KEGG: tbd:Tbd_0302 glycosyltransferase; group 1 glycosyl transferase complement(1436158..1437312) Pseudoalteromonas atlantica T6c 4172597 YP_660772.1 CDS Patl_1192 NC_008228.1 1437309 1438358 R KEGG: noc:Noc_0749 hypothetical protein; hypothetical protein complement(1437309..1438358) Pseudoalteromonas atlantica T6c 4172598 YP_660773.1 CDS Patl_1193 NC_008228.1 1438362 1439477 R PFAM: glycosyl transferase, group 1; KEGG: neu:NE1796 glycosyl transferase group 1; group 1 glycosyl transferase complement(1438362..1439477) Pseudoalteromonas atlantica T6c 4172599 YP_660774.1 CDS Patl_1194 NC_008228.1 1439491 1441395 R TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II asparagine synthase; KEGG: neu:NE1795 glutamine amidotransferase class-II:asparagine synthase; asparagine synthase complement(1439491..1441395) Pseudoalteromonas atlantica T6c 4172600 YP_660775.1 CDS Patl_1195 NC_008228.1 1441469 1442536 R KEGG: hch:HCH_02721 hypothetical protein; hypothetical protein complement(1441469..1442536) Pseudoalteromonas atlantica T6c 4172601 YP_660776.1 CDS Patl_1196 NC_008228.1 1442533 1443540 R KEGG: nar:Saro_1349 hypothetical protein; hypothetical protein complement(1442533..1443540) Pseudoalteromonas atlantica T6c 4172602 YP_660777.1 CDS Patl_1197 NC_008228.1 1443540 1444664 R PFAM: glycosyl transferase, group 1; KEGG: gme:Gmet_2001 glycosyl transferase, group 1; group 1 glycosyl transferase complement(1443540..1444664) Pseudoalteromonas atlantica T6c 4172603 YP_660778.1 CDS Patl_1198 NC_008228.1 1444668 1445624 R PFAM: glycosyl transferase, family 2; KEGG: pfo:Pfl_2017 glycosyl transferase, family 2; glycosyl transferase family protein complement(1444668..1445624) Pseudoalteromonas atlantica T6c 4172604 YP_660779.1 CDS Patl_1199 NC_008228.1 1445655 1448267 R hypothetical protein complement(1445655..1448267) Pseudoalteromonas atlantica T6c 4172605 YP_660780.1 CDS Patl_1200 NC_008228.1 1448275 1449411 R KEGG: cps:CPS_5003 hypothetical protein; hypothetical protein complement(1448275..1449411) Pseudoalteromonas atlantica T6c 4172606 YP_660781.1 CDS Patl_1201 NC_008228.1 1449448 1452204 R PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: cps:CPS_0310 TPR domain protein; hypothetical protein complement(1449448..1452204) Pseudoalteromonas atlantica T6c 4172607 YP_660782.1 CDS Patl_1202 NC_008228.1 1452356 1453984 R PFAM: FAD linked oxidase-like; KEGG: cps:CPS_4397 FAD-binding protein; 4-cresol dehydrogenase complement(1452356..1453984) Pseudoalteromonas atlantica T6c 4172608 YP_660783.1 CDS Patl_1203 NC_008228.1 1454211 1455047 R hypothetical protein complement(1454211..1455047) Pseudoalteromonas atlantica T6c 4172609 YP_660784.1 CDS Patl_1204 NC_008228.1 1455424 1456233 R KEGG: cps:CPS_4396 hypothetical protein; hypothetical protein complement(1455424..1456233) Pseudoalteromonas atlantica T6c 4172610 YP_660785.1 CDS Patl_1205 NC_008228.1 1456265 1457104 R PFAM: Patatin; KEGG: gsu:GSU0310 hypothetical protein; patatin complement(1456265..1457104) Pseudoalteromonas atlantica T6c 4172671 YP_660786.1 CDS Patl_1206 NC_008228.1 1457196 1457951 R PFAM: protein of unknown function DUF218; KEGG: cps:CPS_2002 hypothetical protein; hypothetical protein complement(1457196..1457951) Pseudoalteromonas atlantica T6c 4172672 YP_660787.1 CDS Patl_1207 NC_008228.1 1458025 1458195 R KEGG: eba:ebA1639 predicted nucleoside-diphosphate-sugar epimerase; hypothetical protein complement(1458025..1458195) Pseudoalteromonas atlantica T6c 4172673 YP_660788.1 CDS Patl_1208 NC_008228.1 1458307 1459089 D PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: cps:CPS_4394 serine protease; peptidase S1 and S6, chymotrypsin/Hap 1458307..1459089 Pseudoalteromonas atlantica T6c 4172674 YP_660789.1 CDS Patl_1209 NC_008228.1 1459233 1459775 D hypothetical protein 1459233..1459775 Pseudoalteromonas atlantica T6c 4172675 YP_660790.1 CDS Patl_1210 NC_008228.1 1459776 1460060 D hypothetical protein 1459776..1460060 Pseudoalteromonas atlantica T6c 4172676 YP_660791.1 CDS Patl_1211 NC_008228.1 1460050 1460961 D KEGG: tbd:Tbd_2497 HPr kinase; HPr kinase 1460050..1460961 Pseudoalteromonas atlantica T6c 4172677 YP_660792.1 CDS Patl_1212 NC_008228.1 1460958 1462094 D KEGG: tbd:Tbd_2498 hypothetical protein; hypothetical protein 1460958..1462094 Pseudoalteromonas atlantica T6c 4172678 YP_660793.1 CDS Patl_1213 NC_008228.1 1462116 1464290 R catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G complement(1462116..1464290) Pseudoalteromonas atlantica T6c 4172679 YP_660794.1 CDS Patl_1214 NC_008228.1 1464389 1465333 R PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pha:PSHAa1822 transcriptional regulator; LysR family transcriptional regulator complement(1464389..1465333) Pseudoalteromonas atlantica T6c 4172680 YP_660795.1 CDS Patl_1215 NC_008228.1 1465597 1467198 R Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase complement(1465597..1467198) Pseudoalteromonas atlantica T6c 4172681 YP_660796.1 CDS Patl_1216 NC_008228.1 1467633 1468922 D PFAM: Alkaline phosphatase; KEGG: cps:CPS_1963 alkaline phosphatase; alkaline phosphatase 1467633..1468922 Pseudoalteromonas atlantica T6c 4172682 YP_660797.1 CDS Patl_1217 NC_008228.1 1469091 1469789 R KEGG: vch:VC0807 hypothetical protein; hypothetical protein complement(1469091..1469789) Pseudoalteromonas atlantica T6c 4172683 YP_660798.1 CDS Patl_1218 NC_008228.1 1469905 1470483 R PFAM: Rhomboid-like protein; KEGG: pha:PSHAa2191 rhomboid protein; rhomboid-like protein complement(1469905..1470483) Pseudoalteromonas atlantica T6c 4172684 YP_660799.1 CDS Patl_1219 NC_008228.1 1470551 1471714 R PFAM: glutathionylspermidine synthase; KEGG: hch:HCH_06602 glutathionylspermidine synthase; glutathionylspermidine synthase complement(1470551..1471714) Pseudoalteromonas atlantica T6c 4172685 YP_660800.1 CDS Patl_1220 NC_008228.1 1471723 1472337 R KEGG: ppr:PBPRB0051 hypothetical integral membrane protein; hypothetical protein complement(1471723..1472337) Pseudoalteromonas atlantica T6c 4172686 YP_660801.1 CDS Patl_1221 NC_008228.1 1472346 1472762 R PFAM: protein of unknown function DUF350; KEGG: hch:HCH_06600 predicted membrane protein; hypothetical protein complement(1472346..1472762) Pseudoalteromonas atlantica T6c 4172687 YP_660802.1 CDS Patl_1222 NC_008228.1 1472789 1473436 R KEGG: hch:HCH_06599 hypothetical protein; hypothetical protein complement(1472789..1473436) Pseudoalteromonas atlantica T6c 4172688 YP_660803.1 CDS Patl_1223 NC_008228.1 1473438 1474487 R PFAM: Ion transport 2; KEGG: hch:HCH_06598 Kef-type K+ transport system, predicted NAD-binding component; Ion transport 2 complement(1473438..1474487) Pseudoalteromonas atlantica T6c 4172689 YP_660804.1 CDS Patl_1224 NC_008228.1 1474665 1475345 R PFAM: PspA/IM30; KEGG: hch:HCH_06597 phage shock protein A (IM30), suppresses sigma54-dependent transcription; phage shock protein A, PspA complement(1474665..1475345) Pseudoalteromonas atlantica T6c 4172690 YP_660805.1 CDS Patl_1225 NC_008228.1 1475361 1475750 R KEGG: hch:HCH_06595 hypothetical protein; hypothetical protein complement(1475361..1475750) Pseudoalteromonas atlantica T6c 4172691 YP_660806.1 CDS Patl_1226 NC_008228.1 1475937 1476245 D KEGG: hch:HCH_06594 hypothetical protein; hypothetical protein 1475937..1476245 Pseudoalteromonas atlantica T6c 4172692 YP_660807.1 CDS Patl_1227 NC_008228.1 1476482 1477522 D TIGRFAM: S-adenosylmethionine--tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: son:SO3114 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; S-adenosylmethionine--tRNA-ribosyltransferase- isomerase 1476482..1477522 Pseudoalteromonas atlantica T6c 4172693 YP_660808.1 CDS tgt NC_008228.1 1477703 1478815 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1477703..1478815 Pseudoalteromonas atlantica T6c 4172694 YP_660809.1 CDS yajC NC_008228.1 1478846 1479184 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1478846..1479184 Pseudoalteromonas atlantica T6c 4172695 YP_660810.1 CDS secD NC_008228.1 1479262 1481106 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1479262..1481106 Pseudoalteromonas atlantica T6c 4172696 YP_660811.1 CDS Patl_1231 NC_008228.1 1481117 1482058 D TIGRFAM: protein-export membrane protein, SecD/SecF family protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: cps:CPS_1123 protein-export membrane protein SecF; protein-export membrane protein SecF 1481117..1482058 Pseudoalteromonas atlantica T6c 4172697 YP_660812.1 CDS Patl_1232 NC_008228.1 1482323 1483102 R PFAM: inositol monophosphatase; KEGG: cps:CPS_1128 inositol-1-monophosphatase; inositol-1(or 4)-monophosphatase complement(1482323..1483102) Pseudoalteromonas atlantica T6c 4172698 YP_660813.1 CDS Patl_1233 NC_008228.1 1483339 1483722 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vch:VCA0890 glyoxylase I family protein; glyoxalase/bleomycin resistance protein/dioxygenase 1483339..1483722 Pseudoalteromonas atlantica T6c 4172699 YP_660814.1 CDS Patl_1234 NC_008228.1 1483756 1484073 D hypothetical protein 1483756..1484073 Pseudoalteromonas atlantica T6c 4172700 YP_660815.1 CDS Patl_1235 NC_008228.1 1484105 1484830 D TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pha:PSHAa2673 tRNA/rRNA methyltransferase; RNA methyltransferase 1484105..1484830 Pseudoalteromonas atlantica T6c 4172701 YP_660816.1 CDS Patl_1236 NC_008228.1 1484833 1485636 D TIGRFAM: serine O-acetyltransferase; KEGG: cps:CPS_1130 serine O-acetyltransferase; serine O-acetyltransferase 1484833..1485636 Pseudoalteromonas atlantica T6c 4172702 YP_660817.1 CDS Patl_1237 NC_008228.1 1485762 1486247 D TIGRFAM: putative transcriptional regulator, Rrf2 family iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: vfi:VF0616 Rrf2 family protein; BadM/Rrf2 family transcriptional regulator 1485762..1486247 Pseudoalteromonas atlantica T6c 4172703 YP_660818.1 CDS Patl_1238 NC_008228.1 1486264 1487487 D TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase, class V aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ppr:PBPRA0750 putative aminotransferase NifS, class V; cysteine desulfurase IscS 1486264..1487487 Pseudoalteromonas atlantica T6c 4172704 YP_660819.1 CDS Patl_1239 NC_008228.1 1487551 1487931 D TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU-like-like; KEGG: son:SO2265 NifU family protein; scaffold protein 1487551..1487931 Pseudoalteromonas atlantica T6c 4172705 YP_660820.1 CDS Patl_1240 NC_008228.1 1487957 1488280 D TIGRFAM: iron-sulfur cluster assembly accessory protein iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF; KEGG: eca:ECA3235 iron-sulfur cluster assembly protein; iron-sulfur cluster assembly protein IscA 1487957..1488280 Pseudoalteromonas atlantica T6c 4172706 YP_660821.1 CDS hscB NC_008228.1 1488415 1488942 D J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 1488415..1488942 Pseudoalteromonas atlantica T6c 4172707 YP_660822.1 CDS Patl_1242 NC_008228.1 1488963 1490831 D TIGRFAM: Fe-S protein assembly chaperone HscA; PFAM: Heat shock protein 70; KEGG: sdy:SDY_2722 HscA; Fe-S protein assembly chaperone HscA 1488963..1490831 Pseudoalteromonas atlantica T6c 4172708 YP_660823.1 CDS Patl_1243 NC_008228.1 1490878 1491216 D TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: pha:PSHAa2666 [2Fe-2S] ferredoxin, electron carrier protein, involved in assembly of Fe-S clusters; ferredoxin, 2Fe-2S type, ISC system 1490878..1491216 Pseudoalteromonas atlantica T6c 4172709 YP_660824.1 CDS Patl_1244 NC_008228.1 1491355 1491645 D KEGG: son:SO2604 hypothetical protein; hypothetical protein 1491355..1491645 Pseudoalteromonas atlantica T6c 4173255 YP_660825.1 CDS Patl_1245 NC_008228.1 1491804 1493579 R PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO1238 acyltransferase family protein; phospholipid/glycerol acyltransferase complement(1491804..1493579) Pseudoalteromonas atlantica T6c 4173256 YP_660826.1 CDS Patl_1246 NC_008228.1 1493690 1494508 R PFAM: metallophosphoesterase; KEGG: reu:Reut_A0941 metallophosphoesterase; metallophosphoesterase complement(1493690..1494508) Pseudoalteromonas atlantica T6c 4173257 YP_660827.1 CDS Patl_1247 NC_008228.1 1494644 1497256 R KEGG: son:SO1626 protein-P-II uridylyltransferase; TIGRFAM: protein-P-II uridylyltransferase; PFAM: amino acid-binding ACT DNA polymerase, beta-like region metal-dependent phosphohydrolase, HD subdomain GlnD PII-uridylyltransferase; SMART: Metal-dependent phosphohydrolase, HD region; UTP-GlnB uridylyltransferase, GlnD complement(1494644..1497256) Pseudoalteromonas atlantica T6c 4173258 YP_660828.1 CDS Patl_1248 NC_008228.1 1497404 1498195 R TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: pha:PSHAa2037 methionine aminopeptidase; contains a divalent metal, usually cobalt; methionine aminopeptidase complement(1497404..1498195) Pseudoalteromonas atlantica T6c 4173259 YP_660829.1 CDS Patl_1249 NC_008228.1 1498507 1499238 D PFAM: ribosomal protein S2; KEGG: pha:PSHAa2036 30S ribosomal subunit protein S2; 30S ribosomal protein S2 1498507..1499238 Pseudoalteromonas atlantica T6c 4173260 YP_660830.1 CDS tsf NC_008228.1 1499371 1500243 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1499371..1500243 Pseudoalteromonas atlantica T6c 4173261 YP_660831.1 CDS pyrH NC_008228.1 1500511 1501254 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1500511..1501254 Pseudoalteromonas atlantica T6c 4173262 YP_660832.1 CDS frr NC_008228.1 1501270 1501827 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1501270..1501827 Pseudoalteromonas atlantica T6c 4173263 YP_660833.1 CDS Patl_1253 NC_008228.1 1501842 1502582 D KEGG: vpa:VP2314 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 1501842..1502582 Pseudoalteromonas atlantica T6c 4173264 YP_660834.1 CDS Patl_1254 NC_008228.1 1502632 1503495 D PFAM: phosphatidate cytidylyltransferase; KEGG: ilo:IL0840 CDP-diglyceride synthetase; phosphatidate cytidylyltransferase 1502632..1503495 Pseudoalteromonas atlantica T6c 4173265 YP_660835.1 CDS Patl_1255 NC_008228.1 1503495 1504688 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1503495..1504688 Pseudoalteromonas atlantica T6c 4173266 YP_660836.1 CDS Patl_1256 NC_008228.1 1504688 1506040 D KEGG: cps:CPS_1560 membrane-associated zinc metalloprotease EcfE; TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF; putative membrane-associated zinc metalloprotease 1504688..1506040 Pseudoalteromonas atlantica T6c 4173267 YP_660837.1 CDS Patl_1257 NC_008228.1 1506102 1508576 D PFAM: surface antigen (D15) surface antigen variable number; KEGG: cps:CPS_1561 outer membrane protein, OMP85 family; surface antigen (D15) 1506102..1508576 Pseudoalteromonas atlantica T6c 4173268 YP_660838.1 CDS Patl_1258 NC_008228.1 1508631 1509146 D PFAM: outer membrane chaperone Skp (OmpH); KEGG: cps:CPS_1562 outer membrane protein, OmpH family; Outer membrane chaperone Skp 1508631..1509146 Pseudoalteromonas atlantica T6c 4173269 YP_660839.1 CDS Patl_1259 NC_008228.1 1509189 1510223 D TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; KEGG: eca:ECA1041 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 1509189..1510223 Pseudoalteromonas atlantica T6c 4173270 YP_660840.1 CDS fabZ NC_008228.1 1510265 1510711 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1510265..1510711 Pseudoalteromonas atlantica T6c 4173271 YP_660841.1 CDS Patl_1261 NC_008228.1 1510713 1511483 D TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: cps:CPS_1565 UDP-N-acetylglucosamine acyltransferase; acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase 1510713..1511483 Pseudoalteromonas atlantica T6c 4173272 YP_660842.1 CDS Patl_1262 NC_008228.1 1511487 1512653 D KEGG: pha:PSHAa2017 tetraacyldisaccharide-1-P synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase, family 19; lipid-A-disaccharide synthase 1511487..1512653 Pseudoalteromonas atlantica T6c 4173273 YP_660843.1 CDS Patl_1263 NC_008228.1 1512654 1513247 D PFAM: ribonuclease HII/HIII; KEGG: pha:PSHAa2016 RNAse HII; ribonuclease H 1512654..1513247 Pseudoalteromonas atlantica T6c 4173274 YP_660844.1 CDS Patl_1264 NC_008228.1 1513248 1516715 D KEGG: pha:PSHAa2015 DNA polymerase III subunit alpha; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP-like nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: Phosphoesterase PHP-like; DNA polymerase III subunit alpha 1513248..1516715 Pseudoalteromonas atlantica T6c 4173275 YP_660845.1 CDS Patl_1265 NC_008228.1 1516764 1517720 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1516764..1517720 Pseudoalteromonas atlantica T6c 4173276 YP_660846.1 CDS Patl_1266 NC_008228.1 1517817 1519211 D TIGRFAM: tRNA(Ile)-lysidine synthetase tRNA(Ile)-lysidine synthetase-like; PFAM: PP-loop; KEGG: sdy:SDY_0206 cell cycle protein; tRNA(Ile)-lysidine synthetase 1517817..1519211 Pseudoalteromonas atlantica T6c 4173277 YP_660847.1 CDS Patl_1267 NC_008228.1 1519371 1520156 D PFAM: lipase, class 3; KEGG: vpa:VPA0997 lipase-related protein; lipase, class 3 1519371..1520156 Pseudoalteromonas atlantica T6c 4173278 YP_660848.1 CDS Patl_1268 NC_008228.1 1520383 1521924 R PFAM: Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: pha:PSHAa1088 TPR motives; response regulator receiver protein complement(1520383..1521924) Pseudoalteromonas atlantica T6c 4173279 YP_660849.1 CDS Patl_1269 NC_008228.1 1522222 1523085 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: ppr:PBPRA2946 hypothetical protein; diguanylate cyclase complement(1522222..1523085) Pseudoalteromonas atlantica T6c 4173280 YP_660850.1 CDS Patl_1270 NC_008228.1 1523214 1525187 D PFAM: TrkA-N TrkA-C sodium/hydrogen exchanger; KEGG: ilo:IL1685 Kef-type K+ transport system, membrane component; sodium/hydrogen exchanger 1523214..1525187 Pseudoalteromonas atlantica T6c 4173281 YP_660851.1 CDS Patl_1271 NC_008228.1 1525296 1527098 D PFAM: carboxyl transferase biotin/lipoyl attachment; KEGG: ccr:CC3214 carbamoyl-phosphate synthase/carboxyl transferase; propionyl-CoA carboxylase 1525296..1527098 Pseudoalteromonas atlantica T6c 4173282 YP_660852.1 CDS Patl_1272 NC_008228.1 1527170 1528222 D PFAM: helix-turn-helix, AraC type transcription activator, effector binding; KEGG: mca:MCA2158 transcriptional regulator, AraC family; AraC family transcriptional regulator 1527170..1528222 Pseudoalteromonas atlantica T6c 4173283 YP_660853.1 CDS Patl_1273 NC_008228.1 1528327 1528800 D PFAM: protein of unknown function DUF1456; KEGG: ppr:PBPRA2338 conserved hypothetical protein; hypothetical protein 1528327..1528800 Pseudoalteromonas atlantica T6c 4173284 YP_660854.1 CDS Patl_1274 NC_008228.1 1528848 1529978 R PFAM: Patatin; KEGG: cps:CPS_1594 patatin-like phospholipase family protein; patatin complement(1528848..1529978) Pseudoalteromonas atlantica T6c 4173285 YP_660855.1 CDS Patl_1275 NC_008228.1 1530005 1530844 R PFAM: beta-lactamase-like; KEGG: tel:tlr1981 hypothetical protein; beta-lactamase-like protein complement(1530005..1530844) Pseudoalteromonas atlantica T6c 4173286 YP_660856.1 CDS Patl_1276 NC_008228.1 1531129 1532844 R TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S) Anticodon-binding YbaK/prolyl-tRNA synthetase associated region; KEGG: cps:CPS_3230 prolyl-tRNA synthetase; prolyl-tRNA synthetase complement(1531129..1532844) Pseudoalteromonas atlantica T6c 4173287 YP_660857.1 CDS Patl_1277 NC_008228.1 1532939 1533694 R PFAM: protein of unknown function UPF0066; KEGG: pha:PSHAa1622 hypothetical protein; hypothetical protein complement(1532939..1533694) Pseudoalteromonas atlantica T6c 4173288 YP_660858.1 CDS Patl_1278 NC_008228.1 1533918 1534991 D KEGG: cps:CPS_1107 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase-like hydrolase Haloacid dehalogenase-like hydrolase, type 3; phosphoserine phosphatase SerB 1533918..1534991 Pseudoalteromonas atlantica T6c 4173289 YP_660859.1 CDS Patl_1279 NC_008228.1 1535033 1537555 R PFAM: type IV pilus assembly PilZ; KEGG: pha:PSHAa0662 hypothetical protein; type IV pilus assembly PilZ complement(1535033..1537555) Pseudoalteromonas atlantica T6c 4173290 YP_660860.1 CDS Patl_1280 NC_008228.1 1537769 1539133 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1537769..1539133 Pseudoalteromonas atlantica T6c 4173291 YP_660861.1 CDS Patl_1281 NC_008228.1 1539319 1540386 D KEGG: rba:RB356 hypothetical protein; hypothetical protein 1539319..1540386 Pseudoalteromonas atlantica T6c 4173292 YP_660862.1 CDS Patl_1282 NC_008228.1 1540394 1540954 D KEGG: gme:Gmet_1668 putative transmembrane protein; hypothetical protein 1540394..1540954 Pseudoalteromonas atlantica T6c 4173293 YP_660863.1 CDS Patl_1283 NC_008228.1 1540954 1543065 D TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: mag:amb3617 hypothetical protein YddU; diguanylate cyclase/phosphodiesterase 1540954..1543065 Pseudoalteromonas atlantica T6c 4173331 YP_660864.1 CDS Patl_1284 NC_008228.1 1544338 1547061 R TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase-like; KEGG: pha:PSHAa0159 aconitate hydratase; aconitate hydratase 1 complement(1544338..1547061) Pseudoalteromonas atlantica T6c 4173332 YP_660865.1 CDS Patl_1285 NC_008228.1 1547176 1547937 R KEGG: eba:ebA2078 hypothetical protein; hypothetical protein complement(1547176..1547937) Pseudoalteromonas atlantica T6c 4173333 YP_660866.1 CDS Patl_1286 NC_008228.1 1548486 1548896 R PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: pha:PSHAa2411 hypothetical protein; glutathione-dependent formaldehyde-activating protein complement(1548486..1548896) Pseudoalteromonas atlantica T6c 4173334 YP_660867.1 CDS Patl_1287 NC_008228.1 1549032 1550315 R KEGG: pca:Pcar_0146 transporter, NRAMP family; transporter complement(1549032..1550315) Pseudoalteromonas atlantica T6c 4173335 YP_660868.1 CDS Patl_1288 NC_008228.1 1550396 1551031 R PFAM: helix-turn-helix, AraC type regulatory protein, TetR; KEGG: reu:Reut_B3613 regulatory protein, TetR; TetR family transcriptional regulator complement(1550396..1551031) Pseudoalteromonas atlantica T6c 4173336 YP_660869.1 CDS Patl_1289 NC_008228.1 1551391 1551792 D hypothetical protein 1551391..1551792 Pseudoalteromonas atlantica T6c 4173337 YP_660870.1 CDS Patl_1290 NC_008228.1 1551977 1552903 D TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase, subunit II COX aromatic rich; KEGG: pha:PSHAa2231 ubiquinol oxidase polypeptide II (cytochrome o subunit 2) (oxidase BO(3) subunit 2) (cytochrome o ubiquinol oxidase subunit 2) (ubiquinol oxidase chain B); ubiquinol oxidase subunit II 1551977..1552903 Pseudoalteromonas atlantica T6c 4173338 YP_660871.1 CDS Patl_1291 NC_008228.1 1552906 1554900 D PFAM: cytochrome c oxidase, subunit I; KEGG: pha:PSHAa2230 ubiquinol oxidase polypeptide I (cytochrome o subunit 1) (oxidase BO(3) subunit 1) (cytochrome o ubiquinol oxidase subunit 1) (ubiquinol oxidase chain A); cytochrome-c oxidase 1552906..1554900 Pseudoalteromonas atlantica T6c 4173339 YP_660872.1 CDS Patl_1292 NC_008228.1 1554897 1555541 D PFAM: cytochrome c oxidase, subunit III; KEGG: pha:PSHAa2229 cytochrome o ubiquinol oxidase subunit III (ubiquinol oxidase chain C); cytochrome c oxidase subunit III 1554897..1555541 Pseudoalteromonas atlantica T6c 4173340 YP_660873.1 CDS Patl_1293 NC_008228.1 1555541 1555858 D PFAM: cytochrome C oxidase subunit IV; KEGG: pha:PSHAa2228 cytochrome o ubiquinol oxidase protein (ubiquinol oxidase chain D); cytochrome C oxidase subunit IV 1555541..1555858 Pseudoalteromonas atlantica T6c 4173341 YP_660874.1 CDS Patl_1294 NC_008228.1 1555872 1556762 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 1555872..1556762 Pseudoalteromonas atlantica T6c 4173342 YP_660875.1 CDS Patl_1295 NC_008228.1 1556903 1560574 R KEGG: rba:RB641 sensory histidine protein kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; multi-sensor hybrid histidine kinase complement(1556903..1560574) Pseudoalteromonas atlantica T6c 4173343 YP_660876.1 CDS Patl_1296 NC_008228.1 1560749 1562416 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein complement(1560749..1562416) Pseudoalteromonas atlantica T6c 4173344 YP_660877.1 CDS Patl_1297 NC_008228.1 1562690 1563994 D PFAM: peptidase M20 peptidase dimerisation; KEGG: pha:PSHAb0171 putative hydrolase; peptidase M20 1562690..1563994 Pseudoalteromonas atlantica T6c 4173345 YP_660878.1 CDS Patl_1298 NC_008228.1 1564018 1565067 D PFAM: oxidoreductase-like Oxidoreductase-like homoserine dehydrogenase, NAD-binding; KEGG: cac:CAC1480 predicted dehydrogenase; oxidoreductase-like protein 1564018..1565067 Pseudoalteromonas atlantica T6c 4173346 YP_660879.1 CDS glyA NC_008228.1 1565337 1566593 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1565337..1566593 Pseudoalteromonas atlantica T6c 4173347 YP_660880.1 CDS Patl_1300 NC_008228.1 1566972 1567613 D KEGG: pha:PSHAa0613 hypothetical protein; hypothetical protein 1566972..1567613 Pseudoalteromonas atlantica T6c 4173348 YP_660881.1 CDS Patl_1301 NC_008228.1 1567796 1569094 R hypothetical protein complement(1567796..1569094) Pseudoalteromonas atlantica T6c 4173349 YP_660882.1 CDS Patl_1302 NC_008228.1 1569091 1569600 R hypothetical protein complement(1569091..1569600) Pseudoalteromonas atlantica T6c 4173350 YP_660883.1 CDS Patl_1303 NC_008228.1 1569604 1572894 R PFAM: Sporulation related; KEGG: eli:ELI_10110 hypothetical protein; sporulation related protein complement(1569604..1572894) Pseudoalteromonas atlantica T6c 4173351 YP_660884.1 CDS Patl_1304 NC_008228.1 1572908 1573666 R KEGG: eli:ELI_10115 hypothetical protein; hypothetical protein complement(1572908..1573666) Pseudoalteromonas atlantica T6c 4173352 YP_660885.1 CDS Patl_1305 NC_008228.1 1573666 1574430 R hypothetical protein complement(1573666..1574430) Pseudoalteromonas atlantica T6c 4173353 YP_660886.1 CDS Patl_1306 NC_008228.1 1574517 1575158 R hypothetical protein complement(1574517..1575158) Pseudoalteromonas atlantica T6c 4173354 YP_660887.1 CDS Patl_1307 NC_008228.1 1575169 1575876 R hypothetical protein complement(1575169..1575876) Pseudoalteromonas atlantica T6c 4173355 YP_660888.1 CDS Patl_1308 NC_008228.1 1576809 1577585 R KEGG: pha:PSHAa0755 hypothetical protein; hypothetical protein complement(1576809..1577585) Pseudoalteromonas atlantica T6c 4173356 YP_660889.1 CDS Patl_1309 NC_008228.1 1577595 1578191 R KEGG: pha:PSHAa0754 hypothetical protein; hypothetical protein complement(1577595..1578191) Pseudoalteromonas atlantica T6c 4173357 YP_660890.1 CDS nrdR NC_008228.1 1578376 1578825 D TIGRFAM: Ribonucleotide reductase regulator NrdR-like; PFAM: ATP-cone; KEGG: ilo:IL1871 predicted transcriptional regulator; transcriptional regulator NrdR 1578376..1578825 Pseudoalteromonas atlantica T6c 4173358 YP_660891.1 CDS Patl_1311 NC_008228.1 1578884 1580002 D KEGG: ppr:PBPRA0797 putative pyrimidine deaminase/pyrimidine reductase; TIGRFAM: riboflavin biosynthesis protein RibD Riboflavin-specific deaminase-like; PFAM: CMP/dCMP deaminase, zinc-binding bifunctional deaminase-reductase-like; riboflavin biosynthesis protein RibD 1578884..1580002 Pseudoalteromonas atlantica T6c 4173359 YP_660892.1 CDS Patl_1312 NC_008228.1 1580146 1580811 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1580146..1580811 Pseudoalteromonas atlantica T6c 4173360 YP_660893.1 CDS Patl_1313 NC_008228.1 1580907 1582004 D PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase GTP cyclohydrolase II; KEGG: son:SO3467 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative; GTP cyclohydrolase II 1580907..1582004 Pseudoalteromonas atlantica T6c 4173361 YP_660894.1 CDS ribH NC_008228.1 1582254 1582730 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1582254..1582730 Pseudoalteromonas atlantica T6c 4173362 YP_660895.1 CDS nusB NC_008228.1 1582731 1583153 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1582731..1583153 Pseudoalteromonas atlantica T6c 4173363 YP_660896.1 CDS Patl_1316 NC_008228.1 1583226 1584236 D TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein-like; KEGG: spt:SPA2304 thiamine-monophosphate kinase; thiamine-monophosphate kinase 1583226..1584236 Pseudoalteromonas atlantica T6c 4173364 YP_660897.1 CDS Patl_1317 NC_008228.1 1584236 1584724 D PFAM: phosphatidylglycerophosphatase A; KEGG: son:SO3463 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase 1584236..1584724 Pseudoalteromonas atlantica T6c 4173365 YP_660898.1 CDS Patl_1318 NC_008228.1 1584827 1585270 D PFAM: protein of unknown function DUF188; KEGG: cps:CPS_3584 hypothetical protein; hypothetical protein 1584827..1585270 Pseudoalteromonas atlantica T6c 4173366 YP_660899.1 CDS Patl_1319 NC_008228.1 1585355 1587220 R TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase, central region Transketolase-like; KEGG: vvy:VV0868 deoxyxylulose-5-phosphate synthase; deoxyxylulose-5-phosphate synthase complement(1585355..1587220) Pseudoalteromonas atlantica T6c 4173367 YP_660900.1 CDS Patl_1320 NC_008228.1 1587266 1588156 R PFAM: Polyprenyl synthetase; KEGG: vpa:VP0687 geranyltranstransferase; polyprenyl synthetase complement(1587266..1588156) Pseudoalteromonas atlantica T6c 4173368 YP_660901.1 CDS Patl_1321 NC_008228.1 1588156 1588407 R TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: ppr:PBPRA0807 putative exodeoxyribonuclease, small subunit; exodeoxyribonuclease VII small subunit complement(1588156..1588407) Pseudoalteromonas atlantica T6c 4173369 YP_660902.1 CDS Patl_1322 NC_008228.1 1588745 1589509 D Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein PomA 1588745..1589509 Pseudoalteromonas atlantica T6c 4172786 YP_660903.1 CDS motB NC_008228.1 1589513 1590430 D with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar motor protein MotB 1589513..1590430 Pseudoalteromonas atlantica T6c 4172787 YP_660904.1 CDS Patl_1324 NC_008228.1 1590544 1591101 R KEGG: cps:CPS_1374 putative lipoprotein; putative lipoprotein complement(1590544..1591101) Pseudoalteromonas atlantica T6c 4172788 YP_660905.1 CDS Patl_1325 NC_008228.1 1591110 1591634 R KEGG: ilo:IL1381 hypothetical protein; hypothetical protein complement(1591110..1591634) Pseudoalteromonas atlantica T6c 4172789 YP_660906.1 CDS Patl_1326 NC_008228.1 1591638 1592891 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase Methyltransferase type 11 Methyltransferase type 12; KEGG: ilo:IL1383 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase complement(1591638..1592891) Pseudoalteromonas atlantica T6c 4172790 YP_660907.1 CDS Patl_1327 NC_008228.1 1592893 1593621 R PFAM: protein of unknown function DUF1365; KEGG: ilo:IL1384 hypothetical protein; hypothetical protein complement(1592893..1593621) Pseudoalteromonas atlantica T6c 4172791 YP_660908.1 CDS Patl_1328 NC_008228.1 1593621 1594892 R KEGG: vpa:VP1121 hypothetical protein; hypothetical protein complement(1593621..1594892) Pseudoalteromonas atlantica T6c 4172792 YP_660909.1 CDS Patl_1329 NC_008228.1 1594909 1595625 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ilo:IL1386 short chain dehydrogenase family protein; short-chain dehydrogenase/reductase SDR complement(1594909..1595625) Pseudoalteromonas atlantica T6c 4172793 YP_660910.1 CDS Patl_1330 NC_008228.1 1595622 1596044 R PFAM: protein of unknown function DUF1486; KEGG: eca:ECA2216 hypothetical protein; hypothetical protein complement(1595622..1596044) Pseudoalteromonas atlantica T6c 4172794 YP_660911.1 CDS Patl_1331 NC_008228.1 1596207 1596773 D SMART: Peptidase S16, lon-like; KEGG: vpa:VP2360 hypothetical protein; peptidase S16, lon-like 1596207..1596773 Pseudoalteromonas atlantica T6c 4172795 YP_660912.1 CDS Patl_1332 NC_008228.1 1596829 1597443 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 1596829..1597443 Pseudoalteromonas atlantica T6c 4172796 YP_660913.1 CDS Patl_1333 NC_008228.1 1597436 1598107 D TIGRFAM: anti-sigma factor, putative, ChrR family; KEGG: ilo:IL1392 transcription negative regulator ChrR; anti-ECF sigma factor ChrR 1597436..1598107 Pseudoalteromonas atlantica T6c 4172797 YP_660914.1 CDS Patl_1334 NC_008228.1 1598187 1598954 R KEGG: cps:CPS_3916 putative lipoprotein; putative lipoprotein complement(1598187..1598954) Pseudoalteromonas atlantica T6c 4172798 YP_660915.1 CDS Patl_1335 NC_008228.1 1599127 1600110 D KEGG: eca:ECA3347 ribosomal large subunit pseudouridine synthase D; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 pseudouridine synthase; RluA family pseudouridine synthase 1599127..1600110 Pseudoalteromonas atlantica T6c 4172799 YP_660916.1 CDS Patl_1336 NC_008228.1 1600117 1600851 D PFAM: protein of unknown function DUF152; KEGG: mca:MCA0973 conserved hypothetical protein TIGR00726; hypothetical protein 1600117..1600851 Pseudoalteromonas atlantica T6c 4172800 YP_660917.1 CDS Patl_1337 NC_008228.1 1600972 1603548 D PFAM: AAA ATPase, central region Clp, N terminal ATPase associated with various cellular activities, AAA_5 ATPase AAA-2; SMART: ATPase; KEGG: ilo:IL1181 ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones; ATPase 1600972..1603548 Pseudoalteromonas atlantica T6c 4172801 YP_660918.1 CDS Patl_1338 NC_008228.1 1603657 1606452 R PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: neu:NE1444 TPR repeat; hypothetical protein complement(1603657..1606452) Pseudoalteromonas atlantica T6c 4172802 YP_660919.1 CDS Patl_1339 NC_008228.1 1606610 1607374 R KEGG: hch:HCH_00502 protein of unknown function (DUF1555); hypothetical protein complement(1606610..1607374) Pseudoalteromonas atlantica T6c 4172803 YP_660920.1 CDS Patl_1340 NC_008228.1 1607753 1608577 D KEGG: ilo:IL1180 phosphatidylserine synthase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 1607753..1608577 Pseudoalteromonas atlantica T6c 4172804 YP_660921.1 CDS Patl_1341 NC_008228.1 1615679 1617835 R PFAM: protein of unknown function DUF699, ATPase putative; KEGG: pha:PSHAa0121 hypothetical protein; hypothetical protein complement(1615679..1617835) Pseudoalteromonas atlantica T6c 4172810 YP_660922.1 CDS Patl_1342 NC_008228.1 1617903 1618310 D PFAM: thioesterase superfamily; KEGG: cps:CPS_1696 thioesterase family protein; thioesterase superfamily protein 1617903..1618310 Pseudoalteromonas atlantica T6c 4172811 YP_660923.1 CDS Patl_1343 NC_008228.1 1618310 1619215 D KEGG: pha:PSHAb0433 hypothetical protein; hypothetical protein 1618310..1619215 Pseudoalteromonas atlantica T6c 4172812 YP_660924.1 CDS Patl_1344 NC_008228.1 1619481 1621544 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0067 TonB-dependent receptor; TonB-dependent receptor 1619481..1621544 Pseudoalteromonas atlantica T6c 4172814 YP_660925.1 CDS Patl_1345 NC_008228.1 1621560 1621817 D KEGG: pha:PSHAa2432 hypothetical protein; hypothetical protein 1621560..1621817 Pseudoalteromonas atlantica T6c 4172815 YP_660926.1 CDS Patl_1346 NC_008228.1 1621817 1622464 D TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: cps:CPS_0065 putative nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC 1621817..1622464 Pseudoalteromonas atlantica T6c 4172816 YP_660927.1 CDS Patl_1347 NC_008228.1 1622442 1623281 D PFAM: aminoglycoside phosphotransferase; KEGG: ilo:IL2355 choline kinase involved in LPS biosynthesis; aminoglycoside phosphotransferase 1622442..1623281 Pseudoalteromonas atlantica T6c 4172817 YP_660928.1 CDS Patl_1348 NC_008228.1 1623851 1624396 D hypothetical protein 1623851..1624396 Pseudoalteromonas atlantica T6c 4171845 YP_660929.1 CDS Patl_1349 NC_008228.1 1624389 1624835 D TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: ssn:SSO_4523 acyltransferase for 30S ribosomal subunit protein S18; acetylation of N-terminal alanine; ribosomal-protein-alanine acetyltransferase 1624389..1624835 Pseudoalteromonas atlantica T6c 4171846 YP_660930.1 CDS Patl_1350 NC_008228.1 1624890 1625144 R XRE family transcriptional regulator complement(1624890..1625144) Pseudoalteromonas atlantica T6c 4171847 YP_660931.1 CDS Patl_1351 NC_008228.1 1625431 1626216 R KEGG: ath:At1g28290 pollen Ole e 1 allergen and extensin family protein; hypothetical protein complement(1625431..1626216) Pseudoalteromonas atlantica T6c 4171848 YP_660932.1 CDS Patl_1352 NC_008228.1 1626297 1627007 R hypothetical protein complement(1626297..1627007) Pseudoalteromonas atlantica T6c 4171849 YP_660933.1 CDS Patl_1353 NC_008228.1 1627007 1627273 R PFAM: helix-turn-helix motif; XRE family transcriptional regulator complement(1627007..1627273) Pseudoalteromonas atlantica T6c 4171850 YP_660934.1 CDS Patl_1354 NC_008228.1 1627867 1628679 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rba:RB9586 probable oxidoreductase; short-chain dehydrogenase/reductase SDR 1627867..1628679 Pseudoalteromonas atlantica T6c 4171851 YP_660935.1 CDS Patl_1355 NC_008228.1 1629072 1629317 R KEGG: pha:PSHAa0191 hypothetical protein; hypothetical protein complement(1629072..1629317) Pseudoalteromonas atlantica T6c 4171852 YP_660936.1 CDS Patl_1356 NC_008228.1 1629528 1630433 R PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: cps:CPS_2531 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1629528..1630433) Pseudoalteromonas atlantica T6c 4171853 YP_660937.1 CDS Patl_1357 NC_008228.1 1630549 1631529 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: rba:RB9584 ripening-induced protein-putative Zn-containing oxidoreductase; zinc-binding alcohol dehydrogenase 1630549..1631529 Pseudoalteromonas atlantica T6c 4171854 YP_660938.1 CDS prfC NC_008228.1 1631882 1633468 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1631882..1633468 Pseudoalteromonas atlantica T6c 4171855 YP_660939.1 CDS argS NC_008228.1 1633544 1635280 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1633544..1635280 Pseudoalteromonas atlantica T6c 4171856 YP_660940.1 CDS Patl_1360 NC_008228.1 1635520 1636566 D TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor PCRF; KEGG: ppr:PBPRA0569 putative peptide chain release factor 2; peptide chain release factor 2 1635520..1636566 Pseudoalteromonas atlantica T6c 4171857 YP_660941.1 CDS lysS NC_008228.1 1636610 1638163 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1636610..1638163 Pseudoalteromonas atlantica T6c 4171858 YP_660942.1 CDS Patl_1362 NC_008228.1 1638319 1639203 R KEGG: vvu:VV11810 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase-like Ketopantoate reductase ApbA/PanE-like; 2-dehydropantoate 2-reductase complement(1638319..1639203) Pseudoalteromonas atlantica T6c 4171859 YP_660943.1 CDS Patl_1363 NC_008228.1 1639221 1639937 R TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: ppr:PBPRA2511 putative pseudouridine synthase Rlu family protein; pseudouridine synthase Rlu family protein complement(1639221..1639937) Pseudoalteromonas atlantica T6c 4171860 YP_660944.1 CDS Patl_1364 NC_008228.1 1639930 1640493 R PFAM: Hpt; KEGG: pha:PSHAa2621 sensory box sensor histidine kinase/response regulator; Hpt protein complement(1639930..1640493) Pseudoalteromonas atlantica T6c 4171861 YP_660945.1 CDS Patl_1365 NC_008228.1 1640599 1643475 D PFAM: peptidase M16-like; KEGG: son:SO3560 peptidase, M16 family; peptidase M16-like protein 1640599..1643475 Pseudoalteromonas atlantica T6c 4171862 YP_660946.1 CDS Patl_1366 NC_008228.1 1643567 1645168 D TIGRFAM: glutamate--cysteine ligase; KEGG: cps:CPS_4078 glutamate--cysteine ligase; glutamate--cysteine ligase 1643567..1645168 Pseudoalteromonas atlantica T6c 4171863 YP_660947.1 CDS Patl_1367 NC_008228.1 1647909 1648565 D KEGG: cps:CPS_4077 putative lipoprotein; putative lipoprotein 1647909..1648565 Pseudoalteromonas atlantica T6c 4171864 YP_660948.1 CDS Patl_1368 NC_008228.1 1649245 1650792 D PFAM: AMP-dependent synthetase and ligase; KEGG: reu:Reut_A3057 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1649245..1650792 Pseudoalteromonas atlantica T6c 4171865 YP_660949.1 CDS Patl_1369 NC_008228.1 1650789 1651415 R PFAM: regulatory protein, TetR; KEGG: cps:CPS_2448 transcription regulator, TetR family; TetR family transcriptional regulator complement(1650789..1651415) Pseudoalteromonas atlantica T6c 4171866 YP_660950.1 CDS Patl_1370 NC_008228.1 1651550 1652425 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ccr:CC0353 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase 1651550..1652425 Pseudoalteromonas atlantica T6c 4171867 YP_660951.1 CDS Patl_1371 NC_008228.1 1652457 1654505 D PFAM: NADH:flavin oxidoreductase/NADH oxidase FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cps:CPS_2449 2,4-dienoyl-CoA reductase; NADH:flavin oxidoreductase 1652457..1654505 Pseudoalteromonas atlantica T6c 4171868 YP_660952.1 CDS Patl_1372 NC_008228.1 1654602 1655483 R PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: cps:CPS_4921 substrate-binding transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1654602..1655483) Pseudoalteromonas atlantica T6c 4171869 YP_660953.1 CDS Patl_1373 NC_008228.1 1655631 1656608 D PFAM: aldo/keto reductase; KEGG: pha:PSHAa0541 oxidoreductase, aldo/keto reductase; aldo/keto reductase 1655631..1656608 Pseudoalteromonas atlantica T6c 4171870 YP_660954.1 CDS Patl_1374 NC_008228.1 1656696 1657046 D KEGG: sfx:S3217 hypothetical protein; hypothetical protein 1656696..1657046 Pseudoalteromonas atlantica T6c 4171871 YP_660955.1 CDS Patl_1375 NC_008228.1 1657116 1658897 D PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: cps:CPS_0985 putative alpha amylase; alpha amylase 1657116..1658897 Pseudoalteromonas atlantica T6c 4171872 YP_660956.1 CDS Patl_1376 NC_008228.1 1658989 1660320 R PFAM: Na+/H+ antiporter NhaC; KEGG: ilo:IL2378 Na+/H+ antiporter; Na+/H+ antiporter NhaC complement(1658989..1660320) Pseudoalteromonas atlantica T6c 4171873 YP_660957.1 CDS Patl_1377 NC_008228.1 1660746 1662029 D PFAM: sodium/hydrogen exchanger; KEGG: pha:PSHAb0496 putative Na+/H+ antiporter; sodium/hydrogen exchanger 1660746..1662029 Pseudoalteromonas atlantica T6c 4171874 YP_660958.1 CDS Patl_1378 NC_008228.1 1662178 1662579 D PFAM: BLUF domain containing protein; KEGG: son:SO3629 expression activator-related protein; BLUF domain-containing protein 1662178..1662579 Pseudoalteromonas atlantica T6c 4171875 YP_660959.1 CDS Patl_1379 NC_008228.1 1662631 1664499 R KEGG: cps:CPS_1758 putative alkaline phosphatase; putative alkaline phosphatase complement(1662631..1664499) Pseudoalteromonas atlantica T6c 4171876 YP_660960.1 CDS Patl_1381 NC_008228.1 1666093 1666488 D KEGG: pae:PA0914 hypothetical protein; hypothetical protein 1666093..1666488 Pseudoalteromonas atlantica T6c 4171878 YP_660961.1 CDS Patl_1382 NC_008228.1 1666567 1666980 D hypothetical protein 1666567..1666980 Pseudoalteromonas atlantica T6c 4171879 YP_660962.1 CDS Patl_1383 NC_008228.1 1667471 1667896 D hypothetical protein 1667471..1667896 Pseudoalteromonas atlantica T6c 4171880 YP_660963.1 CDS Patl_1384 NC_008228.1 1668337 1668978 R PFAM: transposase IS116/IS110/IS902; KEGG: cps:CPS_2742 ISCps7, transposase; transposase IS116/IS110/IS902 complement(1668337..1668978) Pseudoalteromonas atlantica T6c 4171881 YP_660964.1 CDS Patl_1385 NC_008228.1 1670082 1671065 R PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAb0050 hypothetical protein; hypothetical protein complement(1670082..1671065) Pseudoalteromonas atlantica T6c 4171882 YP_660965.1 CDS Patl_1386 NC_008228.1 1671349 1671687 D PFAM: helix-turn-helix motif; KEGG: cps:CPS_2176 hypothetical protein; XRE family transcriptional regulator 1671349..1671687 Pseudoalteromonas atlantica T6c 4173526 YP_660966.1 CDS Patl_1387 NC_008228.1 1671789 1672997 R PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase; transposase, IS4 complement(1671789..1672997) Pseudoalteromonas atlantica T6c 4173527 YP_660967.1 CDS Patl_1388 NC_008228.1 1673219 1673539 D hypothetical protein 1673219..1673539 Pseudoalteromonas atlantica T6c 4173528 YP_660968.1 CDS Patl_1389 NC_008228.1 1673792 1674160 R PFAM: Uncharacterised conserved protein UCP006287; KEGG: son:SO3983 hypothetical protein; hypothetical protein complement(1673792..1674160) Pseudoalteromonas atlantica T6c 4173529 YP_660969.1 CDS Patl_1390 NC_008228.1 1674182 1674676 R PFAM: protein of unknown function DUF45; KEGG: cps:CPS_3293 conserved hypothetical protein; hypothetical protein complement(1674182..1674676) Pseudoalteromonas atlantica T6c 4173530 YP_660970.1 CDS Patl_1391 NC_008228.1 1674696 1674989 R KEGG: pha:PSHAb0334 hypothetical protein; hypothetical protein complement(1674696..1674989) Pseudoalteromonas atlantica T6c 4173531 YP_660971.1 CDS Patl_1392 NC_008228.1 1675056 1676621 R PFAM: SpoVR; KEGG: vpa:VP0985 hypothetical protein; SpoVR family protein complement(1675056..1676621) Pseudoalteromonas atlantica T6c 4173532 YP_660972.1 CDS Patl_1393 NC_008228.1 1676625 1677908 R PFAM: protein of unknown function DUF444; KEGG: pha:PSHAa1213 hypothetical protein; hypothetical protein complement(1676625..1677908) Pseudoalteromonas atlantica T6c 4173533 YP_660973.1 CDS Patl_1394 NC_008228.1 1677962 1679884 R PFAM: PrkA serine kinase PrkA AAA; KEGG: vch:VC1872 serine protein kinase; putative serine protein kinase PrkA complement(1677962..1679884) Pseudoalteromonas atlantica T6c 4173534 YP_660974.1 CDS Patl_1395 NC_008228.1 1680172 1680753 R PFAM: manganese and iron superoxide dismutase; KEGG: pha:PSHAa1215 iron superoxide dismutase; superoxide dismutase complement(1680172..1680753) Pseudoalteromonas atlantica T6c 4173535 YP_660975.1 CDS Patl_1396 NC_008228.1 1681020 1681349 D TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: cps:CPS_3475 glutaredoxin, homolog; glutaredoxin-like protein 1681020..1681349 Pseudoalteromonas atlantica T6c 4173536 YP_660976.1 CDS Patl_1397 NC_008228.1 1681535 1681729 R PFAM: BFD-like [2Fe-2S]-binding region; KEGG: vvy:VV3028 bacterioferritin-associated ferredoxin; BFD-like (2Fe-2S)-binding protein complement(1681535..1681729) Pseudoalteromonas atlantica T6c 4173537 YP_660977.1 CDS Patl_1398 NC_008228.1 1681996 1682601 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: ilo:IL1803 peroxiredoxin, AhpC/Tsa family; alkyl hydroperoxide reductase 1681996..1682601 Pseudoalteromonas atlantica T6c 4173538 YP_660978.1 CDS Patl_1399 NC_008228.1 1682716 1683351 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(1682716..1683351) Pseudoalteromonas atlantica T6c 4173539 YP_660979.1 CDS Patl_1400 NC_008228.1 1683561 1684424 D PFAM: OmpA/MotB; KEGG: cps:CPS_3471 sodium-type flagellar protein MotY; OmpA/MotB protein 1683561..1684424 Pseudoalteromonas atlantica T6c 4173540 YP_660980.1 CDS glpQ NC_008228.1 1684559 1685548 R hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase complement(1684559..1685548) Pseudoalteromonas atlantica T6c 4173541 YP_660981.1 CDS Patl_1402 NC_008228.1 1685585 1685968 R KEGG: pha:PSHAa1091 glyoxalase I, nickel isomerase (lactoylglutathione lyase); TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase complement(1685585..1685968) Pseudoalteromonas atlantica T6c 4173542 YP_660982.1 CDS Patl_1403 NC_008228.1 1686071 1686385 R PFAM: small multidrug resistance protein; KEGG: yps:YPTB0409 putative SugE efflux pump; small multidrug resistance protein complement(1686071..1686385) Pseudoalteromonas atlantica T6c 4173543 YP_660983.1 CDS Patl_1404 NC_008228.1 1686808 1688181 R PFAM: glycoside hydrolase, family 5 Thrombospondin type 3 repeat Carbohydrate-binding family V/XII; KEGG: hch:HCH_03914 endoglucanase; cellulase complement(1686808..1688181) Pseudoalteromonas atlantica T6c 4173544 YP_660984.1 CDS Patl_1405 NC_008228.1 1689023 1690048 R PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: bja:blr3973 probable NADP-dependent oxidoreductase; zinc-binding alcohol dehydrogenase complement(1689023..1690048) Pseudoalteromonas atlantica T6c 4173545 YP_660985.1 CDS Patl_1406 NC_008228.1 1690452 1691222 R PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: bja:bll1082 2-deoxy-D-gluconate 3-dehydrogenase; short-chain dehydrogenase/reductase SDR complement(1690452..1691222) Pseudoalteromonas atlantica T6c 4173546 YP_660986.1 CDS Patl_1407 NC_008228.1 1691387 1691638 R hypothetical protein complement(1691387..1691638) Pseudoalteromonas atlantica T6c 4173547 YP_660987.1 CDS Patl_1408 NC_008228.1 1691940 1693760 D PFAM: acyl-CoA dehydrogenase-like; KEGG: cps:CPS_2263 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase-like protein 1691940..1693760 Pseudoalteromonas atlantica T6c 4173548 YP_660988.1 CDS Patl_1409 NC_008228.1 1694036 1694746 R hypothetical protein complement(1694036..1694746) Pseudoalteromonas atlantica T6c 4173549 YP_660989.1 CDS Patl_1410 NC_008228.1 1694830 1695138 R hypothetical protein complement(1694830..1695138) Pseudoalteromonas atlantica T6c 4173550 YP_660990.1 CDS Patl_1411 NC_008228.1 1695482 1695853 R hypothetical protein complement(1695482..1695853) Pseudoalteromonas atlantica T6c 4173551 YP_660991.1 CDS Patl_1412 NC_008228.1 1695942 1696193 R hypothetical protein complement(1695942..1696193) Pseudoalteromonas atlantica T6c 4173552 YP_660992.1 CDS Patl_1413 NC_008228.1 1696542 1696856 R KEGG: vfi:VF1353 virulence gene repressor RsaL; virulence gene repressor RsaL complement(1696542..1696856) Pseudoalteromonas atlantica T6c 4173553 YP_660993.1 CDS Patl_1415 NC_008228.1 1698607 1699353 R KEGG: lpn:lpg2572 hypothetical protein; hypothetical protein complement(1698607..1699353) Pseudoalteromonas atlantica T6c 4173555 YP_660994.1 CDS Patl_1416 NC_008228.1 1699407 1700387 R KEGG: nmu:Nmul_A0921 hypothetical protein; hypothetical protein complement(1699407..1700387) Pseudoalteromonas atlantica T6c 4173556 YP_660995.1 CDS Patl_1418 NC_008228.1 1701243 1701911 D PFAM: regulatory protein GntR, HTH GntR-like; KEGG: sdn:Sden_1663 GntR-like protein; GntR family transcriptional regulator 1701243..1701911 Pseudoalteromonas atlantica T6c 4173558 YP_660996.1 CDS prpB NC_008228.1 1702016 1702894 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 1702016..1702894 Pseudoalteromonas atlantica T6c 4173559 YP_660997.1 CDS Patl_1420 NC_008228.1 1703010 1704134 D KEGG: cps:CPS_2821 putative 2-methylcitrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; 2-methylcitrate synthase/citrate synthase II 1703010..1704134 Pseudoalteromonas atlantica T6c 4173560 YP_660998.1 CDS Patl_1421 NC_008228.1 1704267 1706873 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1704267..1706873 Pseudoalteromonas atlantica T6c 4173561 YP_660999.1 CDS Patl_1422 NC_008228.1 1706883 1708112 D TIGRFAM: probable AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: ppu:PP2337 hypothetical protein; putative AcnD-accessory protein PrpF 1706883..1708112 Pseudoalteromonas atlantica T6c 4173562 YP_661000.1 CDS Patl_1423 NC_008228.1 1708330 1709511 D PFAM: major facilitator superfamily MFS_1; KEGG: hch:HCH_06744 permease of the major facilitator superfamily; major facilitator superfamily transporter 1708330..1709511 Pseudoalteromonas atlantica T6c 4173563 YP_661001.1 CDS Patl_1424 NC_008228.1 1709704 1710717 D TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: hch:HCH_02106 response regulator containing a CheY-like receiver domain and a GGDEF domain; diguanylate cyclase 1709704..1710717 Pseudoalteromonas atlantica T6c 4173564 YP_661002.1 CDS Patl_1425 NC_008228.1 1711212 1712306 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: mca:MCA0639 NADH-dependent flavin oxidoreductase, Oye family; NADH:flavin oxidoreductase 1711212..1712306 Pseudoalteromonas atlantica T6c 4173582 YP_661003.1 CDS Patl_1426 NC_008228.1 1712484 1713539 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: ilo:IL1440 Zn-dependent alcohol dehydrogenase; alcohol dehydrogenase GroES-like protein 1712484..1713539 Pseudoalteromonas atlantica T6c 4173583 YP_661004.1 CDS Patl_1427 NC_008228.1 1714223 1715626 D PFAM: Ethanolamine ammonia lyase large subunit; KEGG: psp:PSPPH_4667 ethanolamine ammonia-lyase, heavy subunit; ethanolamine ammonia lyase large subunit 1714223..1715626 Pseudoalteromonas atlantica T6c 4173584 YP_661005.1 CDS Patl_1428 NC_008228.1 1715626 1716534 D catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 1715626..1716534 Pseudoalteromonas atlantica T6c 4173585 YP_661006.1 CDS Patl_1429 NC_008228.1 1716663 1718393 R KEGG: pha:PSHAa1664 hypothetical protein; hypothetical protein complement(1716663..1718393) Pseudoalteromonas atlantica T6c 4173586 YP_661007.1 CDS Patl_1430 NC_008228.1 1718674 1720185 R KEGG: cps:CPS_0144 putative lipoprotein; putative lipoprotein complement(1718674..1720185) Pseudoalteromonas atlantica T6c 4173587 YP_661008.1 CDS Patl_1431 NC_008228.1 1720632 1721882 R KEGG: noc:Noc_0277 possible streptogramin lyase, gluconolactonase family; lyase -like protein complement(1720632..1721882) Pseudoalteromonas atlantica T6c 4173588 YP_661009.1 CDS Patl_1432 NC_008228.1 1722055 1722735 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pha:PSHAb0174 putative oxidoreductase, NAD(P)-binding domain; short-chain dehydrogenase/reductase SDR complement(1722055..1722735) Pseudoalteromonas atlantica T6c 4173589 YP_661010.1 CDS Patl_1433 NC_008228.1 1723060 1724295 D PFAM: protein of unknown function DUF1212; KEGG: pha:PSHAb0236 hypothetical protein; hypothetical protein 1723060..1724295 Pseudoalteromonas atlantica T6c 4173590 YP_661011.1 CDS Patl_1434 NC_008228.1 1724342 1725973 R PFAM: ferredoxin-dependent glutamate synthase; KEGG: lpn:lpg0074 glutamate synthase; ferredoxin-dependent glutamate synthase complement(1724342..1725973) Pseudoalteromonas atlantica T6c 4173591 YP_661012.1 CDS Patl_1435 NC_008228.1 1726151 1726522 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_2679 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(1726151..1726522) Pseudoalteromonas atlantica T6c 4173592 YP_661013.1 CDS Patl_1436 NC_008228.1 1726714 1727601 R PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: cps:CPS_0816 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1726714..1727601) Pseudoalteromonas atlantica T6c 4173593 YP_661014.1 CDS Patl_1437 NC_008228.1 1727829 1728155 D PFAM: small multidrug resistance protein; KEGG: pha:PSHAa2214 quaternary ammonium compound-resistance protein (Quarternary ammonium determinant F); small multidrug resistance protein 1727829..1728155 Pseudoalteromonas atlantica T6c 4173594 YP_661015.1 CDS Patl_1438 NC_008228.1 1728300 1729424 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: pha:PSHAa2213 alcohol dehydrogenase class III (glutathione-dependent formaldehyde dehydrogenase )(FDH) (FALDH); zinc-binding alcohol dehydrogenase 1728300..1729424 Pseudoalteromonas atlantica T6c 4173595 YP_661016.1 CDS Patl_1439 NC_008228.1 1729548 1730405 D PFAM: putative esterase; KEGG: cps:CPS_0819 putative esterase; carboxylesterase 1729548..1730405 Pseudoalteromonas atlantica T6c 4173596 YP_661017.1 CDS Patl_1440 NC_008228.1 1730483 1731457 R PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: cps:CPS_1392 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1730483..1731457) Pseudoalteromonas atlantica T6c 4173597 YP_661018.1 CDS Patl_1441 NC_008228.1 1731605 1732456 D KEGG: rba:RB12586 hypothetical protein; hypothetical protein 1731605..1732456 Pseudoalteromonas atlantica T6c 4173598 YP_661019.1 CDS Patl_1442 NC_008228.1 1732667 1732990 R hypothetical protein complement(1732667..1732990) Pseudoalteromonas atlantica T6c 4173599 YP_661020.1 CDS Patl_1443 NC_008228.1 1733332 1735563 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ana:alr2588 ferrichrome-iron receptor; TonB-dependent siderophore receptor 1733332..1735563 Pseudoalteromonas atlantica T6c 4173600 YP_661021.1 CDS Patl_1444 NC_008228.1 1735724 1736914 D PFAM: PepSY-associated TM helix; KEGG: ilo:IL2512 uncharacterized iron-regulated membrane protein; PepSY-associated TM helix-containing protein 1735724..1736914 Pseudoalteromonas atlantica T6c 4173601 YP_661022.1 CDS Patl_1445 NC_008228.1 1737132 1738439 R PFAM: short chain fatty acid transporter; KEGG: son:SO1391 short-chain fatty acids transporter; short chain fatty acid transporter complement(1737132..1738439) Pseudoalteromonas atlantica T6c 4173602 YP_661023.1 CDS Patl_1446 NC_008228.1 1738740 1739666 D PFAM: protein of unknown function UPF0187; KEGG: par:Psyc_1261 hypothetical protein; hypothetical protein 1738740..1739666 Pseudoalteromonas atlantica T6c 4173603 YP_661024.1 CDS Patl_1447 NC_008228.1 1740074 1741006 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pst:PSPTO0258 D-isomer specific 2-hydroxyacid dehydrogenase family protein; D-isomer specific 2-hydroxyacid dehydrogenase complement(1740074..1741006) Pseudoalteromonas atlantica T6c 4173604 YP_661025.1 CDS Patl_1448 NC_008228.1 1741194 1741847 R TIGRFAM: maleylacetoacetate isomerase; PFAM: glutathione S-transferase-like; KEGG: pha:PSHAb0337 maleylacetoacetate isomerase (MAAI) (glutathione S-transferase zeta 1) (GSTZ1-1); maleylacetoacetate isomerase complement(1741194..1741847) Pseudoalteromonas atlantica T6c 4173605 YP_661026.1 CDS Patl_1449 NC_008228.1 1742355 1744754 D PFAM: Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: cps:CPS_2378 TPR domain protein; hypothetical protein 1742355..1744754 Pseudoalteromonas atlantica T6c 4173606 YP_661027.1 CDS Patl_1450 NC_008228.1 1744842 1745189 D KEGG: vvy:VV1819 hypothetical protein; hypothetical protein 1744842..1745189 Pseudoalteromonas atlantica T6c 4173607 YP_661028.1 CDS Patl_1451 NC_008228.1 1745240 1745869 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: vpa:VP1379 putative homoserine/homoserine lactone efflux protein; lysine exporter protein LysE/YggA complement(1745240..1745869) Pseudoalteromonas atlantica T6c 4173608 YP_661029.1 CDS Patl_1452 NC_008228.1 1746252 1747838 D PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: pha:PSHAa2018 cytochrome d terminal oxidase, polypeptide subunit I; cytochrome bd ubiquinol oxidase subunit I 1746252..1747838 Pseudoalteromonas atlantica T6c 4173609 YP_661030.1 CDS Patl_1453 NC_008228.1 1747835 1748974 D TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: pha:PSHAa2019 cytochrome d terminal oxidase, polypeptide subunit II; cytochrome d ubiquinol oxidase subunit II 1747835..1748974 Pseudoalteromonas atlantica T6c 4173610 YP_661031.1 CDS Patl_1454 NC_008228.1 1749016 1749198 D TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT-like; KEGG: pha:PSHAa2020 hypothetical protein; cyd operon protein YbgT 1749016..1749198 Pseudoalteromonas atlantica T6c 4173611 YP_661032.1 CDS Patl_1455 NC_008228.1 1749224 1750975 D PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase; KEGG: pha:PSHAa2021 cysteine transport (export) protein (ABC superfamily, membrane (N-terminal), atp_bind (C-terminal)); ABC transporter-like protein 1749224..1750975 Pseudoalteromonas atlantica T6c 4173612 YP_661033.1 CDS Patl_1456 NC_008228.1 1750968 1752842 D PFAM: ABC transporter related; SMART: ATPase; KEGG: pha:PSHAa2022 cysteine transport (export) protein (ABC superfamily, membrane (N-terminal), atp_bind (C-terminal)); ABC transporter-like protein 1750968..1752842 Pseudoalteromonas atlantica T6c 4173613 YP_661034.1 CDS Patl_1457 NC_008228.1 1753148 1753582 D PFAM: OsmC-like protein; KEGG: bba:Bd0909 putative redox protein; OsmC-like protein 1753148..1753582 Pseudoalteromonas atlantica T6c 4173614 YP_661035.1 CDS Patl_1458 NC_008228.1 1753742 1753960 D KEGG: cps:CPS_2574 hypothetical protein; hypothetical protein 1753742..1753960 Pseudoalteromonas atlantica T6c 4173615 YP_661036.1 CDS Patl_1459 NC_008228.1 1754089 1754475 D KEGG: xcv:XCV1857 putative glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein; putative glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein 1754089..1754475 Pseudoalteromonas atlantica T6c 4173616 YP_661037.1 CDS Patl_1460 NC_008228.1 1755296 1756450 D TIGRFAM: metal dependent phophohydrolase; SMART: Metal-dependent phosphohydrolase, HD region; KEGG: cps:CPS_0287 hypothetical protein; metal dependent phosphohydrolase 1755296..1756450 Pseudoalteromonas atlantica T6c 4173617 YP_661038.1 CDS Patl_1461 NC_008228.1 1756496 1756894 R KEGG: vvy:VVA1407 hypothetical protein; hypothetical protein complement(1756496..1756894) Pseudoalteromonas atlantica T6c 4173618 YP_661039.1 CDS Patl_1462 NC_008228.1 1757031 1757792 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_A0450 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(1757031..1757792) Pseudoalteromonas atlantica T6c 4173619 YP_661040.1 CDS Patl_1463 NC_008228.1 1757832 1758281 R PFAM: regulatory protein, MarR; KEGG: bur:Bcep18194_B1526 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(1757832..1758281) Pseudoalteromonas atlantica T6c 4173620 YP_661041.1 CDS Patl_1464 NC_008228.1 1758500 1759486 D KEGG: cps:CPS_0808 hypothetical protein; hypothetical protein 1758500..1759486 Pseudoalteromonas atlantica T6c 4172190 YP_661042.1 CDS Patl_1465 NC_008228.1 1759667 1759972 D hypothetical protein 1759667..1759972 Pseudoalteromonas atlantica T6c 4172191 YP_661043.1 CDS Patl_1466 NC_008228.1 1760258 1760716 R hypothetical protein complement(1760258..1760716) Pseudoalteromonas atlantica T6c 4172192 YP_661044.1 CDS Patl_1467 NC_008228.1 1760764 1762218 D PFAM: phospholipase D/Transphosphatidylase; KEGG: ade:Adeh_4242 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 1760764..1762218 Pseudoalteromonas atlantica T6c 4172193 YP_661045.1 CDS Patl_1468 NC_008228.1 1762277 1763050 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bba:Bd1711 hypothetical protein; hypothetical protein 1762277..1763050 Pseudoalteromonas atlantica T6c 4172194 YP_661046.1 CDS Patl_1469 NC_008228.1 1763249 1763680 D PFAM: UspA; KEGG: son:SO3681 universal stress protein family; hypothetical protein 1763249..1763680 Pseudoalteromonas atlantica T6c 4172195 YP_661047.1 CDS Patl_1470 NC_008228.1 1764156 1764362 D KEGG: ilo:IL2066 hypothetical protein; hypothetical protein 1764156..1764362 Pseudoalteromonas atlantica T6c 4172196 YP_661048.1 CDS Patl_1471 NC_008228.1 1764364 1765140 D TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: dps:DP2240 probable methionine aminopeptidase, MAP; methionine aminopeptidase 1764364..1765140 Pseudoalteromonas atlantica T6c 4172197 YP_661049.1 CDS Patl_1472 NC_008228.1 1765588 1766283 R PFAM: zinc/iron permease; KEGG: dar:Daro_1606 zinc transporter ZIP; zinc/iron permease complement(1765588..1766283) Pseudoalteromonas atlantica T6c 4172198 YP_661050.1 CDS Patl_1473 NC_008228.1 1766713 1768419 R KEGG: tcx:Tcr_0865 hypothetical protein; hypothetical protein complement(1766713..1768419) Pseudoalteromonas atlantica T6c 4172199 YP_661051.1 CDS Patl_1474 NC_008228.1 1768479 1770317 R KEGG: hma:rrnAC0761 hypothetical protein; hypothetical protein complement(1768479..1770317) Pseudoalteromonas atlantica T6c 4172200 YP_661052.1 CDS Patl_1475 NC_008228.1 1770721 1772658 R PFAM: FG-GAP; KEGG: gvi:gll3447 hypothetical protein; hypothetical protein complement(1770721..1772658) Pseudoalteromonas atlantica T6c 4172201 YP_661053.1 CDS Patl_1476 NC_008228.1 1773350 1773733 R PFAM: protein of unknown function DUF1486; KEGG: fnu:FN1222 hypothetical protein; hypothetical protein complement(1773350..1773733) Pseudoalteromonas atlantica T6c 4172202 YP_661054.1 CDS Patl_1477 NC_008228.1 1774569 1775093 R PFAM: Endoribonuclease L-PSP; KEGG: atc:AGR_L_3105 hypothetical protein; endoribonuclease L-PSP complement(1774569..1775093) Pseudoalteromonas atlantica T6c 4172203 YP_661055.1 CDS Patl_1478 NC_008228.1 1775157 1776482 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aminotransferase, class V; KEGG: xcb:XC_0411 isopenicillin N epimerase; twin-arginine translocation pathway signal protein complement(1775157..1776482) Pseudoalteromonas atlantica T6c 4172204 YP_661056.1 CDS Patl_1479 NC_008228.1 1776910 1778637 R TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase LeuA allosteric (dimerisation) domain; KEGG: rso:RSp0322 2-isopropylmalate synthase; 2-isopropylmalate synthase complement(1776910..1778637) Pseudoalteromonas atlantica T6c 4172205 YP_661057.1 CDS Patl_1480 NC_008228.1 1778794 1779255 D PFAM: regulatory proteins, AsnC/Lrp; KEGG: dar:Daro_0512 regulatory proteins, AsnC/Lrp; AsnC family transcriptional regulator 1778794..1779255 Pseudoalteromonas atlantica T6c 4172206 YP_661058.1 CDS Patl_1481 NC_008228.1 1779642 1780790 R PFAM: iron-containing alcohol dehydrogenase; KEGG: ilo:IL0796 alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(1779642..1780790) Pseudoalteromonas atlantica T6c 4172207 YP_661059.1 CDS Patl_1482 NC_008228.1 1781096 1782031 R hypothetical protein complement(1781096..1782031) Pseudoalteromonas atlantica T6c 4172208 YP_661060.1 CDS Patl_1483 NC_008228.1 1782092 1782739 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: vpa:VP1743 hypothetical protein; lysine exporter protein LysE/YggA complement(1782092..1782739) Pseudoalteromonas atlantica T6c 4172209 YP_661061.1 CDS Patl_1484 NC_008228.1 1782924 1783529 R KEGG: mca:MCA0409 lipoprotein, putative; hypothetical protein complement(1782924..1783529) Pseudoalteromonas atlantica T6c 4172210 YP_661062.1 CDS Patl_1485 NC_008228.1 1783550 1784677 R PFAM: aminotransferase, class I and II; KEGG: blo:BL1741 probable aspartate aminotransferase; class I and II aminotransferase complement(1783550..1784677) Pseudoalteromonas atlantica T6c 4172211 YP_661063.1 CDS Patl_1486 NC_008228.1 1785088 1787121 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: hch:HCH_05457 outer membrane receptor for ferrienterochelin and colicins; TonB-dependent receptor, plug 1785088..1787121 Pseudoalteromonas atlantica T6c 4172212 YP_661064.1 CDS Patl_1487 NC_008228.1 1787150 1788274 D KEGG: hch:HCH_05459 hypothetical protein; hypothetical protein 1787150..1788274 Pseudoalteromonas atlantica T6c 4172213 YP_661065.1 CDS Patl_1488 NC_008228.1 1788434 1789366 D PFAM: periplasmic binding protein; KEGG: ilo:IL0113 ABC-type hemin transport system, periplasmic component; periplasmic binding protein 1788434..1789366 Pseudoalteromonas atlantica T6c 4172214 YP_661066.1 CDS Patl_1489 NC_008228.1 1789363 1790484 D PFAM: transport system permease protein; KEGG: ilo:IL0114 ABC-type hemin transport system, pemease component; transport system permease 1789363..1790484 Pseudoalteromonas atlantica T6c 4172215 YP_661067.1 CDS Patl_1490 NC_008228.1 1790490 1791326 D PFAM: ABC transporter related; SMART: ATPase; KEGG: hch:HCH_05463 ABC-type hemin transport system, ATPase component; ABC transporter-like protein 1790490..1791326 Pseudoalteromonas atlantica T6c 4172216 YP_661068.1 CDS Patl_1491 NC_008228.1 1791360 1792094 D PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: ilo:IL0116 uncharacterized metal-binding protein; pyridoxamine 5'-phosphate oxidase-like protein 1791360..1792094 Pseudoalteromonas atlantica T6c 4172217 YP_661069.1 CDS Patl_1492 NC_008228.1 1792239 1792799 R PFAM: glycoside hydrolase, family 24; KEGG: cvi:CV0727 probable phage-related lysozyme; glycoside hydrolase complement(1792239..1792799) Pseudoalteromonas atlantica T6c 4172218 YP_661070.1 CDS Patl_1493 NC_008228.1 1793100 1793489 D PFAM: Ion transport 2; KEGG: ppu:PP3293 hypothetical protein; Ion transport 2 1793100..1793489 Pseudoalteromonas atlantica T6c 4172219 YP_661071.1 CDS Patl_1494 NC_008228.1 1793787 1794311 D hypothetical protein 1793787..1794311 Pseudoalteromonas atlantica T6c 4172220 YP_661072.1 CDS Patl_1495 NC_008228.1 1794544 1795512 R PFAM: beta-lactamase-like; KEGG: cps:CPS_1284 metallo-beta-lactamase family protein; beta-lactamase-like protein complement(1794544..1795512) Pseudoalteromonas atlantica T6c 4172221 YP_661073.1 CDS Patl_1496 NC_008228.1 1795698 1796423 R PFAM: Abortive infection protein; KEGG: bcz:BCZK2732 CAAX amino terminal protease family; abortive infection protein complement(1795698..1796423) Pseudoalteromonas atlantica T6c 4172222 YP_661074.1 CDS Patl_1497 NC_008228.1 1796522 1797439 D PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: lpp:lpp0348 hypothetical protein; LysR family transcriptional regulator 1796522..1797439 Pseudoalteromonas atlantica T6c 4172223 YP_661075.1 CDS Patl_1499 NC_008228.1 1798091 1798948 D hypothetical protein 1798091..1798948 Pseudoalteromonas atlantica T6c 4172225 YP_661076.1 CDS Patl_1500 NC_008228.1 1799244 1799792 R hypothetical protein complement(1799244..1799792) Pseudoalteromonas atlantica T6c 4172226 YP_661077.1 CDS Patl_1501 NC_008228.1 1800877 1805007 D PFAM: PKD domain containing protein peptidase-like; KEGG: ade:Adeh_2204 PKD; peptidase-like protein 1800877..1805007 Pseudoalteromonas atlantica T6c 4172227 YP_661078.1 CDS Patl_1502 NC_008228.1 1805125 1805736 D hypothetical protein 1805125..1805736 Pseudoalteromonas atlantica T6c 4172228 YP_661079.1 CDS Patl_1503 NC_008228.1 1805833 1808088 R PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: dre:337685 O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase); hypothetical protein complement(1805833..1808088) Pseudoalteromonas atlantica T6c 4172952 YP_661080.1 CDS Patl_1504 NC_008228.1 1808281 1808664 D PFAM: protein of unknown function DUF1330; KEGG: bja:blr8010 hypothetical protein; hypothetical protein 1808281..1808664 Pseudoalteromonas atlantica T6c 4172953 YP_661081.1 CDS Patl_1505 NC_008228.1 1808668 1809723 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ana:all5023 probable hydrolase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1808668..1809723 Pseudoalteromonas atlantica T6c 4172954 YP_661082.1 CDS Patl_1506 NC_008228.1 1809716 1811134 D PFAM: aldehyde dehydrogenase; KEGG: ana:all5022 aldehyde dehydrogenase; aldehyde dehydrogenase 1809716..1811134 Pseudoalteromonas atlantica T6c 4172955 YP_661083.1 CDS Patl_1507 NC_008228.1 1811470 1812735 R PFAM: major facilitator superfamily MFS_1; KEGG: bcl:ABC0649 major facilitator (MFS) superfamily protein; major facilitator superfamily transporter complement(1811470..1812735) Pseudoalteromonas atlantica T6c 4172956 YP_661084.1 CDS Patl_1508 NC_008228.1 1812819 1813124 R unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein complement(1812819..1813124) Pseudoalteromonas atlantica T6c 4172957 YP_661085.1 CDS Patl_1509 NC_008228.1 1813136 1813891 R PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: reu:Reut_B4699 regulatory protein GntR, HTH:UbiC transcription regulator-associated; GntR family transcriptional regulator complement(1813136..1813891) Pseudoalteromonas atlantica T6c 4172958 YP_661086.1 CDS Patl_1510 NC_008228.1 1813984 1815333 D PFAM: MmgE/PrpD; KEGG: pae:PA0881 hypothetical protein; MmgE/PrpD 1813984..1815333 Pseudoalteromonas atlantica T6c 4172959 YP_661087.1 CDS Patl_1511 NC_008228.1 1815337 1816755 D PFAM: MmgE/PrpD; KEGG: bpe:BP3842 hypothetical protein; MmgE/PrpD 1815337..1816755 Pseudoalteromonas atlantica T6c 4172960 YP_661088.1 CDS Patl_1512 NC_008228.1 1816877 1818235 D KEGG: bfs:BF1700 putative phenylacetate-coenzyme A ligase; coenzyme F390 synthetase-like protein 1816877..1818235 Pseudoalteromonas atlantica T6c 4172961 YP_661089.1 CDS Patl_1513 NC_008228.1 1818235 1819581 D PFAM: Amidase; KEGG: cpj:CPj0003 Glu tRNA Gln amidotransferae (A subunit); amidase 1818235..1819581 Pseudoalteromonas atlantica T6c 4172962 YP_661090.1 CDS Patl_1514 NC_008228.1 1819845 1820228 R hypothetical protein complement(1819845..1820228) Pseudoalteromonas atlantica T6c 4172963 YP_661091.1 CDS Patl_1515 NC_008228.1 1820225 1820539 R hypothetical protein complement(1820225..1820539) Pseudoalteromonas atlantica T6c 4172964 YP_661092.1 CDS Patl_1516 NC_008228.1 1820659 1821555 D PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: mlo:mll1582 probable transcriptional regulator; LysR family transcriptional regulator 1820659..1821555 Pseudoalteromonas atlantica T6c 4172965 YP_661093.1 CDS Patl_1517 NC_008228.1 1821989 1822453 R PFAM: GCN5-related N-acetyltransferase; KEGG: sme:SMc04442 putative acetyltransferase protein; N-acetyltransferase GCN5 complement(1821989..1822453) Pseudoalteromonas atlantica T6c 4172966 YP_661094.1 CDS Patl_1518 NC_008228.1 1822628 1824100 R TIGRFAM: amidohydrolase; PFAM: peptidase M20 peptidase dimerisation; KEGG: eli:ELI_13895 hypothetical protein; amidohydrolase complement(1822628..1824100) Pseudoalteromonas atlantica T6c 4172967 YP_661095.1 CDS Patl_1519 NC_008228.1 1824159 1825355 R PFAM: peptidase M14, carboxypeptidase A; KEGG: cps:CPS_2692 zinc carboxypeptidase family protein; peptidase M14, carboxypeptidase A complement(1824159..1825355) Pseudoalteromonas atlantica T6c 4172968 YP_661096.1 CDS Patl_1520 NC_008228.1 1825402 1828569 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ilo:IL1415 outer membrane protein; TonB-dependent receptor complement(1825402..1828569) Pseudoalteromonas atlantica T6c 4172969 YP_661097.1 CDS Patl_1521 NC_008228.1 1828656 1829666 R PFAM: FecR protein; KEGG: cps:CPS_0244 putative regulatory protein; putative FecR protein complement(1828656..1829666) Pseudoalteromonas atlantica T6c 4172970 YP_661098.1 CDS Patl_1522 NC_008228.1 1829663 1830232 R PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: pfl:PFL_3156 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(1829663..1830232) Pseudoalteromonas atlantica T6c 4172971 YP_661099.1 CDS Patl_1523 NC_008228.1 1830404 1830946 D PFAM: NUDIX hydrolase; KEGG: vpa:VPA0218 hypothetical protein; NUDIX hydrolase 1830404..1830946 Pseudoalteromonas atlantica T6c 4172972 YP_661100.1 CDS Patl_1524 NC_008228.1 1831169 1831828 D PFAM: thiopurine S-methyltransferase; KEGG: cps:CPS_3096 thiopurine S-methyltransferase family protein; thiopurine S-methyltransferase 1831169..1831828 Pseudoalteromonas atlantica T6c 4172973 YP_661101.1 CDS Patl_1525 NC_008228.1 1831880 1832203 R hypothetical protein complement(1831880..1832203) Pseudoalteromonas atlantica T6c 4172974 YP_661102.1 CDS Patl_1526 NC_008228.1 1832200 1833231 R KEGG: hch:HCH_05761 hypothetical protein; hypothetical protein complement(1832200..1833231) Pseudoalteromonas atlantica T6c 4172975 YP_661103.1 CDS Patl_1527 NC_008228.1 1833368 1834060 R PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: yps:YPTB2818 two-component system response regulator; two component transcriptional regulator complement(1833368..1834060) Pseudoalteromonas atlantica T6c 4172976 YP_661104.1 CDS Patl_1528 NC_008228.1 1834057 1835508 R PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: gsu:GSU3119 sensor histidine kinase; sensor signal transduction histidine kinase complement(1834057..1835508) Pseudoalteromonas atlantica T6c 4172977 YP_661105.1 CDS Patl_1529 NC_008228.1 1835646 1835894 D KEGG: pca:Pcar_0362 hypothetical protein; hypothetical protein 1835646..1835894 Pseudoalteromonas atlantica T6c 4172978 YP_661106.1 CDS Patl_1530 NC_008228.1 1836011 1836355 D hypothetical protein 1836011..1836355 Pseudoalteromonas atlantica T6c 4172979 YP_661107.1 CDS Patl_1531 NC_008228.1 1836496 1837269 R PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: pae:PA3540 GDP-mannose 6-dehydrogenase AlgD; UDP-glucose/GDP-mannose dehydrogenase complement(1836496..1837269) Pseudoalteromonas atlantica T6c 4172980 YP_661108.1 CDS Patl_1532 NC_008228.1 1837569 1838114 D PFAM: 4-vinyl reductase, 4VR; KEGG: cps:CPS_3609 hypothetical protein; 4-vinyl reductase, 4VR 1837569..1838114 Pseudoalteromonas atlantica T6c 4172981 YP_661109.1 CDS Patl_1533 NC_008228.1 1838107 1839600 D PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: cps:CPS_3608 sensor histidine kinase; histidine kinase 1838107..1839600 Pseudoalteromonas atlantica T6c 4172982 YP_661110.1 CDS Patl_1534 NC_008228.1 1839578 1840897 R PFAM: response regulator receiver; KEGG: son:SO2541 response regulator; response regulator receiver protein complement(1839578..1840897) Pseudoalteromonas atlantica T6c 4172983 YP_661111.1 CDS Patl_1535 NC_008228.1 1840935 1842635 R PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: hch:HCH_04025 signal transduction histidine kinase; sensor signal transduction histidine kinase complement(1840935..1842635) Pseudoalteromonas atlantica T6c 4172984 YP_661112.1 CDS Patl_1536 NC_008228.1 1842674 1843498 R TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: vch:VC1089 periplasmic binding protein-related protein; phosphonate ABC transporter periplasmic phosphonate-binding protein complement(1842674..1843498) Pseudoalteromonas atlantica T6c 4172985 YP_661113.1 CDS Patl_1537 NC_008228.1 1843573 1844391 R TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein, MerR response regulator receiver; KEGG: son:SO2540 response regulator; response regulator receiver protein complement(1843573..1844391) Pseudoalteromonas atlantica T6c 4172986 YP_661114.1 CDS Patl_1538 NC_008228.1 1845413 1847104 D PFAM: EAL response regulator receiver; KEGG: vvy:VVA0651 GGDEF family protein; response regulator receiver modulated diguanylate phosphodiesterase 1845413..1847104 Pseudoalteromonas atlantica T6c 4172987 YP_661115.1 CDS Patl_1539 NC_008228.1 1847101 1847661 R PFAM: Smr protein/MutS2; KEGG: cps:CPS_3153 hypothetical protein; Smr protein/MutS2 complement(1847101..1847661) Pseudoalteromonas atlantica T6c 4172988 YP_661116.1 CDS Patl_1540 NC_008228.1 1847774 1848703 D involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1847774..1848703 Pseudoalteromonas atlantica T6c 4172989 YP_661117.1 CDS Patl_1541 NC_008228.1 1848774 1849874 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1848774..1849874 Pseudoalteromonas atlantica T6c 4172990 YP_661118.1 CDS Patl_1542 NC_008228.1 1849925 1851061 D PFAM: nucleoside:H+ symporter major facilitator superfamily MFS_1; KEGG: cps:CPS_3149 putative membrane protein; major facilitator superfamily transporter 1849925..1851061 Pseudoalteromonas atlantica T6c 4172534 YP_661119.1 CDS Patl_1543 NC_008228.1 1851381 1851587 D PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: cps:CPS_4529 cold-shock DNA-binding domain family protein; cold-shock DNA-binding domain-containing protein 1851381..1851587 Pseudoalteromonas atlantica T6c 4172535 YP_661120.1 CDS ansA NC_008228.1 1851714 1852763 R converts asparagine to aspartate and ammonia; asparaginase complement(1851714..1852763) Pseudoalteromonas atlantica T6c 4172536 YP_661121.1 CDS Patl_1545 NC_008228.1 1852837 1853823 R hypothetical protein complement(1852837..1853823) Pseudoalteromonas atlantica T6c 4172537 YP_661122.1 CDS Patl_1546 NC_008228.1 1853830 1854567 R PFAM: dienelactone hydrolase; KEGG: cps:CPS_4005 carboxymethylenebutenolidase family protein; dienelactone hydrolase complement(1853830..1854567) Pseudoalteromonas atlantica T6c 4172538 YP_661123.1 CDS Patl_1547 NC_008228.1 1854714 1854995 D PFAM: protein of unknown function DUF1255; KEGG: pfl:PFL_4201 hypothetical protein; hypothetical protein 1854714..1854995 Pseudoalteromonas atlantica T6c 4172539 YP_661124.1 CDS Patl_1548 NC_008228.1 1855036 1855383 D KEGG: cps:CPS_4834 hypothetical protein; hypothetical protein 1855036..1855383 Pseudoalteromonas atlantica T6c 4172540 YP_661125.1 CDS Patl_1549 NC_008228.1 1855519 1855803 D KEGG: cps:CPS_2550 hypothetical protein; hypothetical protein 1855519..1855803 Pseudoalteromonas atlantica T6c 4172541 YP_661126.1 CDS Patl_1550 NC_008228.1 1855822 1856346 R PFAM: protein of unknown function DUF985; KEGG: pfo:Pfl_2733 protein of unknown function DUF985; hypothetical protein complement(1855822..1856346) Pseudoalteromonas atlantica T6c 4172542 YP_661127.1 CDS Patl_1551 NC_008228.1 1856534 1856818 R KEGG: cps:CPS_2161 hypothetical protein; hypothetical protein complement(1856534..1856818) Pseudoalteromonas atlantica T6c 4172543 YP_661128.1 CDS Patl_1552 NC_008228.1 1856918 1857649 R PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: cps:CPS_4968 peptidyl-prolyl cis-trans isomerase, cyclophilin-type; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(1856918..1857649) Pseudoalteromonas atlantica T6c 4172544 YP_661129.1 CDS Patl_1553 NC_008228.1 1858212 1859174 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(1858212..1859174) Pseudoalteromonas atlantica T6c 4172545 YP_661130.1 CDS Patl_1554 NC_008228.1 1859167 1859820 R TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: pha:PSHAa1020 lipoate-protein ligase B; lipoate-protein ligase B complement(1859167..1859820) Pseudoalteromonas atlantica T6c 4172546 YP_661131.1 CDS Patl_1555 NC_008228.1 1859882 1860145 R PFAM: protein of unknown function DUF493; KEGG: ilo:IL0958 hypothetical protein; hypothetical protein complement(1859882..1860145) Pseudoalteromonas atlantica T6c 4172547 YP_661132.1 CDS Patl_1556 NC_008228.1 1860166 1861338 R PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 Penicillin-binding protein 5-like; KEGG: cps:CPS_1712 D-alanyl-D-alanine carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase complement(1860166..1861338) Pseudoalteromonas atlantica T6c 4172548 YP_661133.1 CDS Patl_1557 NC_008228.1 1861515 1862480 R TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A Sporulation related; KEGG: cps:CPS_1713 putative rare lipoprotein A; rare lipoprotein A complement(1861515..1862480) Pseudoalteromonas atlantica T6c 4172549 YP_661134.1 CDS Patl_1558 NC_008228.1 1862470 1863588 R TIGRFAM: lytic murein transglycosylase B; KEGG: ilo:IL0955 membrane-bound lytic murein transglycosylase B; lytic murein transglycosylase B complement(1862470..1863588) Pseudoalteromonas atlantica T6c 4172550 YP_661135.1 CDS Patl_1559 NC_008228.1 1863639 1864763 R TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: cps:CPS_1714 rod shape-determining protein RodA; rod shape-determining protein RodA complement(1863639..1864763) Pseudoalteromonas atlantica T6c 4172551 YP_661136.1 CDS Patl_1560 NC_008228.1 1864779 1866710 R PFAM: penicillin-binding protein, transpeptidase Penicillin-binding protein, dimerisation domain; KEGG: cps:CPS_1715 penicillin-binding protein; peptidoglycan glycosyltransferase complement(1864779..1866710) Pseudoalteromonas atlantica T6c 4172552 YP_661137.1 CDS Patl_1561 NC_008228.1 1866713 1867183 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(1866713..1867183) Pseudoalteromonas atlantica T6c 4172553 YP_661138.1 CDS Patl_1562 NC_008228.1 1867230 1867547 R TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: son:SO1170 iojap domain protein; iojap family protein complement(1867230..1867547) Pseudoalteromonas atlantica T6c 4172554 YP_661139.1 CDS Patl_1563 NC_008228.1 1867586 1868245 R KEGG: yps:YPTB1100 nicotinic acid mononucleotide adenyltransferase; TIGRFAM: cytidyltransferase-related domain nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase complement(1867586..1868245) Pseudoalteromonas atlantica T6c 4172555 YP_661140.1 CDS Patl_1564 NC_008228.1 1868242 1869264 R KEGG: pha:PSHAa1029 DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; DNA polymerase III subunit delta complement(1868242..1869264) Pseudoalteromonas atlantica T6c 4172556 YP_661141.1 CDS Patl_1565 NC_008228.1 1869264 1869785 R PFAM: Rare lipoprotein B; KEGG: cps:CPS_1721 rare lipoprotein B; rare lipoprotein B complement(1869264..1869785) Pseudoalteromonas atlantica T6c 4172557 YP_661142.1 CDS leuS NC_008228.1 1869801 1872413 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(1869801..1872413) Pseudoalteromonas atlantica T6c 4172558 YP_661143.1 CDS Patl_1567 NC_008228.1 1873202 1875589 D PFAM: peptidase S16, lon-like; KEGG: pha:PSHAa1033 ATP-dependent protease; peptidase S16, lon-like 1873202..1875589 Pseudoalteromonas atlantica T6c 4172559 YP_661144.1 CDS Patl_1568 NC_008228.1 1875674 1876168 D PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1995 peptidyl-prolyl cis-trans isomerase, FkbP family; FKBP-type peptidylprolyl isomerase 1875674..1876168 Pseudoalteromonas atlantica T6c 4172560 YP_661145.1 CDS Patl_1569 NC_008228.1 1876292 1876651 R PFAM: protein of unknown function UPF0044; KEGG: ppr:PBPRA0602 putative RNA-binding protein containing KH domain; hypothetical protein complement(1876292..1876651) Pseudoalteromonas atlantica T6c 4172561 YP_661146.1 CDS Patl_1570 NC_008228.1 1876684 1877313 D PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: vfi:VF0478 23S rRNA Um2552 2'-O-methyltransferase; ribosomal RNA methyltransferase RrmJ/FtsJ 1876684..1877313 Pseudoalteromonas atlantica T6c 4172562 YP_661147.1 CDS Patl_1571 NC_008228.1 1877366 1879336 D KEGG: ppr:PBPRA0604 putative cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41 AAA ATPase, central region peptidase M41, FtsH extracellular ATPase associated with various cellular activities, AAA_5; SMART: ATPase; ATP-dependent metalloprotease FtsH 1877366..1879336 Pseudoalteromonas atlantica T6c 4172563 YP_661148.1 CDS Patl_1572 NC_008228.1 1879422 1880246 D KEGG: yps:YPTB0475 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase 1879422..1880246 Pseudoalteromonas atlantica T6c 4172564 YP_661149.1 CDS glmM NC_008228.1 1880249 1881592 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1880249..1881592 Pseudoalteromonas atlantica T6c 4172565 YP_661150.1 CDS Patl_1574 NC_008228.1 1881722 1882471 D PFAM: triosephosphate isomerase; KEGG: tcx:Tcr_0815 triosephosphate isomerase; triosephosphate isomerase 1881722..1882471 Pseudoalteromonas atlantica T6c 4172566 YP_661151.1 CDS secG NC_008228.1 1882481 1882852 D TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: pha:PSHAa0874 protein-export membrane protein SecG(general secretory pathway); preprotein translocase subunit SecG 1882481..1882852 Pseudoalteromonas atlantica T6c 4172567 YP_661152.1 CDS Patl_1576 NC_008228.1 1883052 1884197 D PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMb20630 putative sugar uptake ABC transporter ATP-binding protein; ABC transporter-like protein 1883052..1884197 Pseudoalteromonas atlantica T6c 4172569 YP_661153.1 CDS rpsP NC_008228.1 1884691 1884942 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1884691..1884942 Pseudoalteromonas atlantica T6c 4172570 YP_661154.1 CDS rimM NC_008228.1 1884973 1885503 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1884973..1885503 Pseudoalteromonas atlantica T6c 4172571 YP_661155.1 CDS trmD NC_008228.1 1885503 1886300 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1885503..1886300 Pseudoalteromonas atlantica T6c 4173833 YP_661156.1 CDS rplS NC_008228.1 1886290 1886652 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1886290..1886652 Pseudoalteromonas atlantica T6c 4173834 YP_661157.1 CDS Patl_1581 NC_008228.1 1886721 1887104 R KEGG: sil:SPO0313 glyoxalase family protein; glyoxalase family protein complement(1886721..1887104) Pseudoalteromonas atlantica T6c 4173835 YP_661158.1 CDS Patl_1582 NC_008228.1 1887195 1887650 D TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: regulatory protein, MerR; KEGG: sil:SPO0314 redox-sensitive transcriptional activator SoxR; MerR family transcriptional regulator 1887195..1887650 Pseudoalteromonas atlantica T6c 4173836 YP_661159.1 CDS Patl_1583 NC_008228.1 1887686 1888678 D PFAM: protein of unknown function DUF890; KEGG: vfi:VFA1153 methyltransferase; putative SAM-dependent methyltransferase 1887686..1888678 Pseudoalteromonas atlantica T6c 4173837 YP_661160.1 CDS Patl_1584 NC_008228.1 1888849 1889439 D PFAM: transferase hexapeptide repeat; KEGG: ecc:c0577 maltose O-acetyltransferase; hexapaptide repeat-containing transferase 1888849..1889439 Pseudoalteromonas atlantica T6c 4173838 YP_661161.1 CDS Patl_1585 NC_008228.1 1889483 1890241 D PFAM: heat shock protein DnaJ-like; KEGG: ilo:IL1722 DnaJ-related protein; heat shock protein DnaJ-like protein 1889483..1890241 Pseudoalteromonas atlantica T6c 4173839 YP_661162.1 CDS Patl_1586 NC_008228.1 1890308 1892518 R PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: bfs:BF3021 putative peptidyl-dipeptidase; peptidyl-dipeptidase Dcp complement(1890308..1892518) Pseudoalteromonas atlantica T6c 4173840 YP_661163.1 CDS Patl_1587 NC_008228.1 1892943 1894034 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1892943..1894034 Pseudoalteromonas atlantica T6c 4173841 YP_661164.1 CDS tyrA NC_008228.1 1894046 1895173 D catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 1894046..1895173 Pseudoalteromonas atlantica T6c 4173842 YP_661165.1 CDS Patl_1589 NC_008228.1 1895203 1895871 D PFAM: protein of unknown function DUF1275; KEGG: ilo:IL0299 hypothetical protein; hypothetical protein 1895203..1895871 Pseudoalteromonas atlantica T6c 4173843 YP_661166.1 CDS Patl_1590 NC_008228.1 1895927 1897126 R TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase Chorismate mutase; KEGG: cps:CPS_1221 chorismate mutase / prephenate dehydratase; chorismate mutase complement(1895927..1897126) Pseudoalteromonas atlantica T6c 4173844 YP_661167.1 CDS Patl_1591 NC_008228.1 1897335 1898135 R PFAM: response regulator receiver; KEGG: son:SO0549 chemotaxis protein CheY/response regulator receiver domain protein; response regulator receiver protein complement(1897335..1898135) Pseudoalteromonas atlantica T6c 4173845 YP_661168.1 CDS Patl_1592 NC_008228.1 1898168 1898488 R PFAM: translation initiation factor SUI1; KEGG: vfi:VFA0573 protein translation initiation factor 1 (IF-1) (or SUI1); translation initiation factor SUI1 complement(1898168..1898488) Pseudoalteromonas atlantica T6c 4173846 YP_661169.1 CDS Patl_1593 NC_008228.1 1898622 1898927 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pha:PSHAa0953 anti-sigma factor antagonist; anti-sigma-factor antagonist 1898622..1898927 Pseudoalteromonas atlantica T6c 4173847 YP_661170.1 CDS Patl_1594 NC_008228.1 1898961 1900607 D PFAM: response regulator receiver Stage II sporulation E; SMART: Protein phosphatase 2C-like; KEGG: pha:PSHAa0954 response regulator; response regulator receiver protein 1898961..1900607 Pseudoalteromonas atlantica T6c 4173848 YP_661171.1 CDS Patl_1595 NC_008228.1 1900604 1901077 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0920 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1900604..1901077 Pseudoalteromonas atlantica T6c 4173849 YP_661172.1 CDS Patl_1596 NC_008228.1 1901119 1902174 D PFAM: extracellular solute-binding protein, family 1; KEGG: ilo:IL1059 ABC-type Fe3+ transport system, periplasmic component; extracellular solute-binding protein 1901119..1902174 Pseudoalteromonas atlantica T6c 4173850 YP_661173.1 CDS Patl_1597 NC_008228.1 1902274 1903860 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ilo:IL1060 ABC-type Fe3+ transport system, permease component; binding-protein-dependent transport system inner membrane protein 1902274..1903860 Pseudoalteromonas atlantica T6c 4173851 YP_661174.1 CDS Patl_1598 NC_008228.1 1903853 1904899 D PFAM: ABC transporter related Transport-associated OB; SMART: ATPase; KEGG: nmu:Nmul_A0730 ABC transporter related; ABC transporter-like protein 1903853..1904899 Pseudoalteromonas atlantica T6c 4173852 YP_661175.1 CDS Patl_1599 NC_008228.1 1904995 1905444 D PFAM: protein of unknown function DUF1332; KEGG: pha:PSHAa2887 hypothetical protein; hypothetical protein 1904995..1905444 Pseudoalteromonas atlantica T6c 4173853 YP_661176.1 CDS Patl_1600 NC_008228.1 1905833 1906177 D KEGG: xcb:XC_3869 hypothetical protein; hypothetical protein 1905833..1906177 Pseudoalteromonas atlantica T6c 4173854 YP_661177.1 CDS Patl_1601 NC_008228.1 1906292 1907695 D PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: sbo:SBO_2584 putative 2-component sensor protein; sensor signal transduction histidine kinase 1906292..1907695 Pseudoalteromonas atlantica T6c 4173855 YP_661178.1 CDS Patl_1602 NC_008228.1 1907695 1908297 D hypothetical protein 1907695..1908297 Pseudoalteromonas atlantica T6c 4173856 YP_661179.1 CDS Patl_1603 NC_008228.1 1908294 1909643 D PFAM: response regulator receiver sigma-54 factor, interaction region helix-turn-helix, Fis-type ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: stm:STM2562 putative transcriptional regulator of two-component regulator protein (EBP familiiy); two component sigma-54 specific Fis family transcriptional regulator 1908294..1909643 Pseudoalteromonas atlantica T6c 4173857 YP_661180.1 CDS Patl_1604 NC_008228.1 1909837 1910628 D KEGG: sbo:SBO_2355 pseudouridylate synthase I; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A 1909837..1910628 Pseudoalteromonas atlantica T6c 4173858 YP_661181.1 CDS Patl_1605 NC_008228.1 1910766 1911614 D TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: cps:CPS_3802 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; acetyl-CoA carboxylase, carboxyl transferase subunit beta 1910766..1911614 Pseudoalteromonas atlantica T6c 4173859 YP_661182.1 CDS Patl_1606 NC_008228.1 1911630 1912910 D TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; KEGG: sec:SC2367 multifunctional folylpolyglutamate synthase; dihydrofolate synthase, also has formylTHF polyglutamate synthase activity; bifunctional folylpolyglutamate synthase/dihydrofolate synthase 1911630..1912910 Pseudoalteromonas atlantica T6c 4173860 YP_661183.1 CDS Patl_1607 NC_008228.1 1912907 1913551 D PFAM: Sporulation related; KEGG: cps:CPS_3800 DedD protein; sporulation-like protein 1912907..1913551 Pseudoalteromonas atlantica T6c 4173861 YP_661184.1 CDS Patl_1608 NC_008228.1 1913689 1914177 D PFAM: Colicin V production protein; KEGG: ilo:IL1013 uncharacterized membrane protein; colicin V production protein 1913689..1914177 Pseudoalteromonas atlantica T6c 4173862 YP_661185.1 CDS Patl_1609 NC_008228.1 1914204 1915721 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1914204..1915721 Pseudoalteromonas atlantica T6c 4173863 YP_661186.1 CDS Patl_1610 NC_008228.1 1915888 1916487 R PFAM: protein of unknown function DUF1282; KEGG: son:SO1787 hypothetical protein; hypothetical protein complement(1915888..1916487) Pseudoalteromonas atlantica T6c 4173864 YP_661187.1 CDS Patl_1611 NC_008228.1 1916792 1917817 D PFAM: biotin/lipoyl attachment secretion protein HlyD; KEGG: rpb:RPB_0171 secretion protein HlyD; secretion protein HlyD 1916792..1917817 Pseudoalteromonas atlantica T6c 4173865 YP_661188.1 CDS Patl_1612 NC_008228.1 1917817 1920624 D PFAM: ABC transporter related ABC-2 type transporter; SMART: ATPase; KEGG: pae:PA5231 putative ABC-2 type transport system permease/ATP-binding protein; ABC transporter-like protein 1917817..1920624 Pseudoalteromonas atlantica T6c 4173866 YP_661189.1 CDS Patl_1613 NC_008228.1 1920628 1921752 D PFAM: ABC-2 type transporter; KEGG: spt:SPA3436 putative ABC superfamily (atp_bind/membrane) transport protein; ABC transporter 1920628..1921752 Pseudoalteromonas atlantica T6c 4173867 YP_661190.1 CDS Patl_1614 NC_008228.1 1921934 1922686 D PFAM: tRNA-hydroxylase; KEGG: pha:PSHAa2068 tRNA-hydroxylase; tRNA-hydroxylase 1921934..1922686 Pseudoalteromonas atlantica T6c 4173868 YP_661191.1 CDS Patl_1615 NC_008228.1 1922702 1923268 R KEGG: vpa:VPA0123 putative hydrolase; HAD superfamily hydrolase complement(1922702..1923268) Pseudoalteromonas atlantica T6c 4173869 YP_661192.1 CDS Patl_1616 NC_008228.1 1923361 1924011 D PFAM: DoxX; KEGG: son:SO2710 hypothetical protein; DoxX protein 1923361..1924011 Pseudoalteromonas atlantica T6c 4173870 YP_661193.1 CDS Patl_1617 NC_008228.1 1924127 1924678 D PFAM: nitroreductase; KEGG: pha:PSHAa1411 nitroreductase; nitroreductase 1924127..1924678 Pseudoalteromonas atlantica T6c 4173871 YP_661194.1 CDS Patl_1618 NC_008228.1 1924785 1926128 R PFAM: helicase-like DEAD/DEAH box helicase-like; KEGG: son:SO2838 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase complement(1924785..1926128) Pseudoalteromonas atlantica T6c 4174047 YP_661195.1 CDS Patl_1619 NC_008228.1 1926222 1926878 R KEGG: pha:PSHAa1446 succinyl-CoA transferase, beta subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B complement(1926222..1926878) Pseudoalteromonas atlantica T6c 4174048 YP_661196.1 CDS Patl_1620 NC_008228.1 1926888 1927607 R KEGG: pha:PSHAa2943 succinyl-CoA transferase, alpha subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A complement(1926888..1927607) Pseudoalteromonas atlantica T6c 4174049 YP_661197.1 CDS Patl_1621 NC_008228.1 1927727 1928620 D PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pae:PA1998 probable transcriptional regulator; LysR family transcriptional regulator 1927727..1928620 Pseudoalteromonas atlantica T6c 4174050 YP_661198.1 CDS Patl_1622 NC_008228.1 1928666 1929433 R KEGG: cps:CPS_1199 hypothetical protein; hypothetical protein complement(1928666..1929433) Pseudoalteromonas atlantica T6c 4174051 YP_661199.1 CDS Patl_1623 NC_008228.1 1929484 1930179 R PFAM: ATP-binding region, ATPase-like; KEGG: ilo:IL1710 signal transduction histidine kinase; histidine kinase complement(1929484..1930179) Pseudoalteromonas atlantica T6c 4174052 YP_661200.1 CDS cysB NC_008228.1 1930376 1931350 D LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 1930376..1931350 Pseudoalteromonas atlantica T6c 4174053 YP_661201.1 CDS Patl_1625 NC_008228.1 1931489 1932862 R KEGG: pha:PSHAa1163 L-serine deaminase I; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain serine dehydratase beta chain; L-serine dehydratase 1 complement(1931489..1932862) Pseudoalteromonas atlantica T6c 4174054 YP_661202.1 CDS Patl_1626 NC_008228.1 1933100 1933693 R PFAM: NUDIX hydrolase; KEGG: ilo:IL1707 NTP pyrophosphohydrolase, NUDIX family; NUDIX hydrolase complement(1933100..1933693) Pseudoalteromonas atlantica T6c 4174055 YP_661203.1 CDS Patl_1627 NC_008228.1 1933698 1935074 R TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein Anthranilate synthase component I-like; KEGG: cps:CPS_3614 para-aminobenzoate synthase, component I; para-aminobenzoate synthase subunit I complement(1933698..1935074) Pseudoalteromonas atlantica T6c 4174056 YP_661204.1 CDS Patl_1628 NC_008228.1 1935321 1936850 D TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: pha:PSHAa1166 fumarate hydratase, class I; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha 1935321..1936850 Pseudoalteromonas atlantica T6c 4174057 YP_661205.1 CDS Patl_1629 NC_008228.1 1937064 1938620 D PFAM: protein of unknown function DUF195; KEGG: son:SO2041 hypothetical protein; hypothetical protein 1937064..1938620 Pseudoalteromonas atlantica T6c 4174058 YP_661206.1 CDS Patl_1630 NC_008228.1 1938617 1939288 D PFAM: pseudouridine synthase; KEGG: pha:PSHAa1206 23S rRNA pseudouridylate synthase; pseudouridylate synthase 1938617..1939288 Pseudoalteromonas atlantica T6c 4174059 YP_661207.1 CDS Patl_1631 NC_008228.1 1939622 1940917 D KEGG: neu:NE1699 hypothetical protein; hypothetical protein 1939622..1940917 Pseudoalteromonas atlantica T6c 4174060 YP_661208.1 CDS Patl_1632 NC_008228.1 1941283 1943394 D KEGG: cps:CPS_2207 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease RNA binding S1 KH, type 1; SMART: KH; polynucleotide phosphorylase/polyadenylase 1941283..1943394 Pseudoalteromonas atlantica T6c 4174061 YP_661209.1 CDS Patl_1633 NC_008228.1 1943526 1944365 R PFAM: Aldose 1-epimerase; KEGG: vfi:VF0912 aldose 1-epimerase-like protein; aldose 1-epimerase complement(1943526..1944365) Pseudoalteromonas atlantica T6c 4174062 YP_661210.1 CDS Patl_1634 NC_008228.1 1944442 1945437 R KEGG: vch:VC2000 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I complement(1944442..1945437) Pseudoalteromonas atlantica T6c 4174063 YP_661211.1 CDS malQ NC_008228.1 1945673 1947868 D amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 1945673..1947868 Pseudoalteromonas atlantica T6c 4174064 YP_661212.1 CDS Patl_1636 NC_008228.1 1947919 1950108 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 1947919..1950108 Pseudoalteromonas atlantica T6c 4174065 YP_661213.1 CDS Patl_1637 NC_008228.1 1950112 1952187 D KEGG: sru:SRU_0849 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13-like alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; glycogen debranching protein GlgX 1950112..1952187 Pseudoalteromonas atlantica T6c 4174066 YP_661214.1 CDS Patl_1638 NC_008228.1 1952316 1952699 D KEGG: hch:HCH_02302 conserved domain frequently associated with peptide methionine sulfoxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; methionine-R-sulfoxide reductase 1952316..1952699 Pseudoalteromonas atlantica T6c 4174067 YP_661215.1 CDS Patl_1639 NC_008228.1 1952834 1953619 R KEGG: pha:PSHAa1901 hypothetical protein; hypothetical protein complement(1952834..1953619) Pseudoalteromonas atlantica T6c 4174068 YP_661216.1 CDS Patl_1640 NC_008228.1 1953807 1955267 D catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 1953807..1955267 Pseudoalteromonas atlantica T6c 4174069 YP_661217.1 CDS Patl_1641 NC_008228.1 1955560 1956687 D PFAM: peptidase M14, carboxypeptidase A; KEGG: pha:PSHAa1899 zinc carboxypeptidase domain protein; peptidase M14, carboxypeptidase A 1955560..1956687 Pseudoalteromonas atlantica T6c 4174070 YP_661218.1 CDS Patl_1642 NC_008228.1 1956775 1958448 D TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: pha:PSHAa1898 Na(+)-linked D-alanine glycine permease; amino acid carrier protein 1956775..1958448 Pseudoalteromonas atlantica T6c 4174071 YP_661219.1 CDS Patl_1643 NC_008228.1 1958543 1958869 D KEGG: cps:CPS_2564 hypothetical protein; hypothetical protein 1958543..1958869 Pseudoalteromonas atlantica T6c 4174072 YP_661220.1 CDS Patl_1644 NC_008228.1 1958869 1959150 D PFAM: protein of unknown function DUF1315; KEGG: pha:PSHAa1896 hypothetical protein; hypothetical protein 1958869..1959150 Pseudoalteromonas atlantica T6c 4174073 YP_661221.1 CDS Patl_1645 NC_008228.1 1959140 1961938 D KEGG: cps:CPS_2566 hypothetical protein; hypothetical protein 1959140..1961938 Pseudoalteromonas atlantica T6c 4174074 YP_661222.1 CDS Patl_1646 NC_008228.1 1962017 1962970 D TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 pseudouridine synthase; KEGG: cps:CPS_0916 RNA pseudouridine synthase family protein; pseudouridine synthase Rsu 1962017..1962970 Pseudoalteromonas atlantica T6c 4174075 YP_661223.1 CDS Patl_1647 NC_008228.1 1963181 1964908 R PFAM: Citrate transporter TrkA-C TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: cps:CPS_2144 putative transporter; hypothetical protein complement(1963181..1964908) Pseudoalteromonas atlantica T6c 4174076 YP_661224.1 CDS cysN NC_008228.1 1964927 1966336 R may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 complement(1964927..1966336) Pseudoalteromonas atlantica T6c 4174077 YP_661225.1 CDS Patl_1649 NC_008228.1 1966339 1967127 R TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: pha:PSHAa0208 3',5' adenosine diphosphate 3' phosphatase; 3'(2'),5'-bisphosphate nucleotidase complement(1966339..1967127) Pseudoalteromonas atlantica T6c 4174078 YP_661226.1 CDS Patl_1650 NC_008228.1 1967127 1967723 R PFAM: adenylylsulfate kinase; KEGG: bcl:ABC0614 adenylylsulfate kinase; adenylylsulfate kinase complement(1967127..1967723) Pseudoalteromonas atlantica T6c 4174079 YP_661227.1 CDS Patl_1651 NC_008228.1 1967723 1968637 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(1967723..1968637) Pseudoalteromonas atlantica T6c 4174080 YP_661228.1 CDS Patl_1652 NC_008228.1 1968769 1969989 R PFAM: EAL; KEGG: cps:CPS_3464 EAL domain protein; diguanylate phosphodiesterase complement(1968769..1969989) Pseudoalteromonas atlantica T6c 4174081 YP_661229.1 CDS Patl_1653 NC_008228.1 1970010 1971545 R TIGRFAM: SSS sodium solute transporter superfamily sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: cps:CPS_3463 proline/sodium symporter; sodium/proline symporter complement(1970010..1971545) Pseudoalteromonas atlantica T6c 4174082 YP_661230.1 CDS Patl_1654 NC_008228.1 1971652 1972110 D PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV0076 probable ElaA protein; N-acetyltransferase GCN5 1971652..1972110 Pseudoalteromonas atlantica T6c 4174083 YP_661231.1 CDS Patl_1655 NC_008228.1 1972221 1972928 R KEGG: cps:CPS_3166 hypothetical protein; hypothetical protein complement(1972221..1972928) Pseudoalteromonas atlantica T6c 4174084 YP_661232.1 CDS Patl_1656 NC_008228.1 1972921 1973478 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(1972921..1973478) Pseudoalteromonas atlantica T6c 4174085 YP_661233.1 CDS Patl_1657 NC_008228.1 1973665 1975419 R KEGG: cps:CPS_3164 BatD protein; BatD protein complement(1973665..1975419) Pseudoalteromonas atlantica T6c 4172248 YP_661234.1 CDS Patl_1658 NC_008228.1 1975424 1977367 R PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: cps:CPS_3163 TPR domain protein; hypothetical protein complement(1975424..1977367) Pseudoalteromonas atlantica T6c 4172249 YP_661235.1 CDS Patl_1659 NC_008228.1 1977360 1978391 R PFAM: von Willebrand factor, type A; KEGG: ilo:IL0998 uncharacterized protein containing a von Willebrand factor type A (vWA) domain; von Willebrand factor type A domain-containing protein complement(1977360..1978391) Pseudoalteromonas atlantica T6c 4172250 YP_661236.1 CDS Patl_1660 NC_008228.1 1978384 1978887 R KEGG: son:SO3092 hypothetical protein; hypothetical protein complement(1978384..1978887) Pseudoalteromonas atlantica T6c 4172251 YP_661237.1 CDS Patl_1661 NC_008228.1 1978884 1979855 R PFAM: protein of unknown function DUF58; KEGG: cps:CPS_3160 hypothetical protein; hypothetical protein complement(1978884..1979855) Pseudoalteromonas atlantica T6c 4172252 YP_661238.1 CDS Patl_1662 NC_008228.1 1979867 1980823 R PFAM: ATPase associated with various cellular activities, AAA_3 ATPase associated with various cellular activities, AAA_5; KEGG: ilo:IL0995 MoxR-like ATPase; ATPase complement(1979867..1980823) Pseudoalteromonas atlantica T6c 4172253 YP_661239.1 CDS fadI NC_008228.1 1981222 1982532 D FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 1981222..1982532 Pseudoalteromonas atlantica T6c 4172254 YP_661240.1 CDS fadJ NC_008228.1 1982543 1984696 D multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha 1982543..1984696 Pseudoalteromonas atlantica T6c 4172255 YP_661241.1 CDS Patl_1665 NC_008228.1 1985405 1989922 R KEGG: son:SO3084 sensory box protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL Two component regulator propeller Two component regulator three Y PAS fold-3 PAS fold-4 PAS fold; SMART: PAC motif; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(1985405..1989922) Pseudoalteromonas atlantica T6c 4172256 YP_661242.1 CDS Patl_1666 NC_008228.1 1990112 1992949 R PFAM: peptidase M16-like; KEGG: son:SO3083 peptidase, M16 family; peptidase M16-like protein complement(1990112..1992949) Pseudoalteromonas atlantica T6c 4172257 YP_661243.1 CDS Patl_1667 NC_008228.1 1993002 1993475 D TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: vpa:VP2205 phosphohistidine phosphatase; phosphohistidine phosphatase SixA 1993002..1993475 Pseudoalteromonas atlantica T6c 4172258 YP_661244.1 CDS Patl_1668 NC_008228.1 1993765 1995054 R PFAM: CBS domain containing protein protein of unknown function DUF21 transporter-associated region; KEGG: son:SO1354 hemolysin protein, putative; hypothetical protein complement(1993765..1995054) Pseudoalteromonas atlantica T6c 4172259 YP_661245.1 CDS Patl_1669 NC_008228.1 1995158 1995946 R PFAM: cytochrome c assembly protein; KEGG: vpa:VP2535 hypothetical protein; cytochrome c assembly protein complement(1995158..1995946) Pseudoalteromonas atlantica T6c 4172260 YP_661246.1 CDS Patl_1670 NC_008228.1 1996180 1997556 D KEGG: cps:CPS_4073 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G-domain Signal peptide binding (SRP54) M-domain; SMART: ATPase; signal recognition particle protein 1996180..1997556 Pseudoalteromonas atlantica T6c 4172261 YP_661247.1 CDS Patl_1671 NC_008228.1 1997673 1997945 D PFAM: Modulator of Rho-dependent transcription termination; KEGG: vvy:VVA1468 hypothetical protein; transcriptional antiterminator Rof 1997673..1997945 Pseudoalteromonas atlantica T6c 4172262 YP_661248.1 CDS Patl_1672 NC_008228.1 1998099 1999316 D KEGG: dde:Dde_3600 hypothetical protein; hypothetical protein 1998099..1999316 Pseudoalteromonas atlantica T6c 4172263 YP_661249.1 CDS Patl_1673 NC_008228.1 1999338 2000246 R PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pha:PSHAb0014 putative transcriptional regulatory protein (LysR family); LysR family transcriptional regulator complement(1999338..2000246) Pseudoalteromonas atlantica T6c 4172264 YP_661250.1 CDS Patl_1674 NC_008228.1 2000404 2001402 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: ilo:IL0315 predicted NADP-dependent oxidoreductases; zinc-binding alcohol dehydrogenase 2000404..2001402 Pseudoalteromonas atlantica T6c 4172265 YP_661251.1 CDS Patl_1675 NC_008228.1 2001601 2002503 R PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: son:SO3318 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2001601..2002503) Pseudoalteromonas atlantica T6c 4172266 YP_661252.1 CDS Patl_1676 NC_008228.1 2002606 2003301 R PFAM: Pirin-like Cupin 2, conserved barrel; KEGG: vpa:VPA0042 hypothetical protein; pirin-like protein complement(2002606..2003301) Pseudoalteromonas atlantica T6c 4172267 YP_661253.1 CDS Patl_1677 NC_008228.1 2003325 2003774 R PFAM: DoxX; KEGG: cps:CPS_1770 DoxD-like family protein; DoxX protein complement(2003325..2003774) Pseudoalteromonas atlantica T6c 4172268 YP_661254.1 CDS Patl_1679 NC_008228.1 2004547 2005926 R PFAM: Fibronectin, type III peptidase M28; KEGG: ilo:IL1071 probable aminopeptidase fused to fibronectin type 3 domain; peptidase M28 complement(2004547..2005926) Pseudoalteromonas atlantica T6c 4172270 YP_661255.1 CDS Patl_1680 NC_008228.1 2006155 2010729 D TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL Two component regulator propeller Two component regulator three Y PAS fold-3; KEGG: cps:CPS_4985 sensory box/GGDEF/EAL domain protein; diguanylate cyclase/phosphodiesterase 2006155..2010729 Pseudoalteromonas atlantica T6c 4172271 YP_661256.1 CDS Patl_1681 NC_008228.1 2010852 2011472 R hypothetical protein complement(2010852..2011472) Pseudoalteromonas atlantica T6c 4172272 YP_661257.1 CDS Patl_1682 NC_008228.1 2011704 2013386 D TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: tcx:Tcr_1062 diguanylate cyclase (GGDEF domain); diguanylate cyclase 2011704..2013386 Pseudoalteromonas atlantica T6c 4172273 YP_661258.1 CDS Patl_1683 NC_008228.1 2013447 2014274 D PFAM: Phytanoyl-CoA dioxygenase; KEGG: hch:HCH_03217 protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin; phytanoyl-CoA dioxygenase 2013447..2014274 Pseudoalteromonas atlantica T6c 4172274 YP_661259.1 CDS Patl_1684 NC_008228.1 2014283 2014558 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: cps:CPS_3482 peptidyl-prolyl cis-trans isomerase C; PpiC-type peptidyl-prolyl cis-trans isomerase complement(2014283..2014558) Pseudoalteromonas atlantica T6c 4172275 YP_661260.1 CDS Patl_1685 NC_008228.1 2014905 2015672 D PFAM: class II aldolase/adducin-like; KEGG: pha:PSHAa0286 hypothetical protein; class II aldolase/adducin-like protein 2014905..2015672 Pseudoalteromonas atlantica T6c 4172276 YP_661261.1 CDS Patl_1686 NC_008228.1 2015721 2016896 D PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: cps:CPS_1173 mandelate racemase/muconate lactonizing enzyme family protein; mandelate racemase/muconate lactonizing-like protein 2015721..2016896 Pseudoalteromonas atlantica T6c 4172277 YP_661262.1 CDS Patl_1687 NC_008228.1 2017199 2018521 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aminotransferase, class V; KEGG: pae:PA2394 probable aminotransferase; twin-arginine translocation pathway signal protein 2017199..2018521 Pseudoalteromonas atlantica T6c 4172278 YP_661263.1 CDS Patl_1688 NC_008228.1 2018626 2020881 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(2018626..2020881) Pseudoalteromonas atlantica T6c 4172279 YP_661264.1 CDS Patl_1689 NC_008228.1 2021162 2021947 R PFAM: peptidase M23B; KEGG: lic:LIC10721 hypothetical protein; peptidase M23B complement(2021162..2021947) Pseudoalteromonas atlantica T6c 4172280 YP_661265.1 CDS Patl_1690 NC_008228.1 2022245 2022691 D PFAM: MaoC-like dehydratase; KEGG: hch:HCH_01683 acyl dehydratase; MaoC-like dehydratase 2022245..2022691 Pseudoalteromonas atlantica T6c 4172281 YP_661266.1 CDS Patl_1691 NC_008228.1 2022973 2025657 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC3194 TonB-dependent receptor; TonB-dependent receptor 2022973..2025657 Pseudoalteromonas atlantica T6c 4172282 YP_661267.1 CDS Patl_1692 NC_008228.1 2025808 2026137 D PFAM: transcriptional coactivator/pterin dehydratase; KEGG: cya:CYA_1048 putative pterin-4A-carbinolamine dehydratase; transcriptional coactivator/pterin dehydratase 2025808..2026137 Pseudoalteromonas atlantica T6c 4172283 YP_661268.1 CDS Patl_1693 NC_008228.1 2026570 2027028 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 2026570..2027028 Pseudoalteromonas atlantica T6c 4172285 YP_661269.1 CDS Patl_1694 NC_008228.1 2027077 2028570 D KEGG: cps:CPS_2202 transcription termination factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 NusA-like; SMART: KH; NusA antitermination factor 2027077..2028570 Pseudoalteromonas atlantica T6c 4171902 YP_661270.1 CDS infB NC_008228.1 2028594 2031203 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 2028594..2031203 Pseudoalteromonas atlantica T6c 4171903 YP_661271.1 CDS Patl_1696 NC_008228.1 2031311 2031727 D PFAM: ribosome-binding factor A; KEGG: cps:CPS_2204 ribosome-binding factor A; ribosome-binding factor A 2031311..2031727 Pseudoalteromonas atlantica T6c 4171904 YP_661272.1 CDS Patl_1697 NC_008228.1 2031731 2032684 D KEGG: vpa:VP2454 tRNA pseudouridine 55 synthase; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB-like; tRNA pseudouridine synthase B 2031731..2032684 Pseudoalteromonas atlantica T6c 4171905 YP_661273.1 CDS rpsO NC_008228.1 2032794 2033063 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 2032794..2033063 Pseudoalteromonas atlantica T6c 4171907 YP_661274.1 CDS Patl_1699 NC_008228.1 2033252 2033632 R hypothetical protein complement(2033252..2033632) Pseudoalteromonas atlantica T6c 4171908 YP_661275.1 CDS Patl_1700 NC_008228.1 2033632 2033850 R KEGG: cps:CPS_4821 hypothetical protein; hypothetical protein complement(2033632..2033850) Pseudoalteromonas atlantica T6c 4171909 YP_661276.1 CDS Patl_1701 NC_008228.1 2033843 2035639 R PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase; KEGG: son:SO0754 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(2033843..2035639) Pseudoalteromonas atlantica T6c 4171910 YP_661277.1 CDS Patl_1702 NC_008228.1 2035663 2036775 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: cps:CPS_4684 GGDEF domain protein; diguanylate cyclase complement(2035663..2036775) Pseudoalteromonas atlantica T6c 4171911 YP_661278.1 CDS Patl_1703 NC_008228.1 2036798 2037391 R PFAM: protein of unknown function DUF330; KEGG: cps:CPS_3078 putative lipoprotein; hypothetical protein complement(2036798..2037391) Pseudoalteromonas atlantica T6c 4171912 YP_661279.1 CDS Patl_1704 NC_008228.1 2037393 2039057 R PFAM: Mammalian cell entry related; KEGG: cps:CPS_3077 putative paraquat-inducible protein B; hypothetical protein complement(2037393..2039057) Pseudoalteromonas atlantica T6c 4171913 YP_661280.1 CDS Patl_1705 NC_008228.1 2039060 2040268 R TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; KEGG: cps:CPS_3076 integral membrane protein, PqiA family; PqiA family integral membrane protein complement(2039060..2040268) Pseudoalteromonas atlantica T6c 4171914 YP_661281.1 CDS Patl_1706 NC_008228.1 2040339 2040830 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: vch:VC1041 phosphotyrosine protein phosphatase; protein tyrosine phosphatase 2040339..2040830 Pseudoalteromonas atlantica T6c 4171915 YP_661282.1 CDS Patl_1707 NC_008228.1 2041131 2042474 D KEGG: pha:PSHAb0559 phospho-2-dehydro-3-deoxyheptonate aldolase (phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase); TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase, class II; phospho-2-dehydro-3-deoxyheptonate aldolase 2041131..2042474 Pseudoalteromonas atlantica T6c 4171916 YP_661283.1 CDS Patl_1708 NC_008228.1 2042540 2042791 D PFAM: FeoA; hypothetical protein 2042540..2042791 Pseudoalteromonas atlantica T6c 4171917 YP_661284.1 CDS Patl_1709 NC_008228.1 2042867 2044723 D TIGRFAM: ferrous iron transport protein B; PFAM: GTP-binding protein, HSR1-related nucleoside recognition; KEGG: rso:RSp0251 probable ferrous iron transport B transmembrane protein; ferrous iron transport protein B 2042867..2044723 Pseudoalteromonas atlantica T6c 4171918 YP_661285.1 CDS Patl_1710 NC_008228.1 2044795 2045271 R PFAM: protein of unknown function DUF88; KEGG: cps:CPS_0134 hypothetical protein; hypothetical protein complement(2044795..2045271) Pseudoalteromonas atlantica T6c 4171919 YP_661286.1 CDS Patl_1711 NC_008228.1 2045622 2045807 D KEGG: pha:PSHAa1300 hypothetical protein; hypothetical protein 2045622..2045807 Pseudoalteromonas atlantica T6c 4171920 YP_661287.1 CDS Patl_1712 NC_008228.1 2045922 2047484 R PFAM: ABC transporter related; SMART: ATPase; KEGG: ecc:c0906 hypothetical ABC transporter ATP-binding protein YbiT; ABC transporter-like protein complement(2045922..2047484) Pseudoalteromonas atlantica T6c 4171921 YP_661288.1 CDS Patl_1713 NC_008228.1 2047951 2048307 R PFAM: SmpA/OmlA; KEGG: son:SO1476 small protein A; SmpA/OmlA protein complement(2047951..2048307) Pseudoalteromonas atlantica T6c 4171922 YP_661289.1 CDS Patl_1714 NC_008228.1 2048421 2050094 R TIGRFAM: DNA repair protein RecN; PFAM: SMC protein-like; KEGG: vvu:VV10367 DNA repair protein RecN; DNA repair protein RecN complement(2048421..2050094) Pseudoalteromonas atlantica T6c 4171923 YP_661290.1 CDS Patl_1715 NC_008228.1 2050187 2051062 R PFAM: ATP-NAD/AcoX kinase; KEGG: pha:PSHAa1220 NAD kinase; NAD(+) kinase complement(2050187..2051062) Pseudoalteromonas atlantica T6c 4171924 YP_661291.1 CDS Patl_1716 NC_008228.1 2051327 2052325 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 2051327..2052325 Pseudoalteromonas atlantica T6c 4171925 YP_661292.1 CDS Patl_1717 NC_008228.1 2052442 2053818 D TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter Citrate transporter; KEGG: ilo:IL2396 Na+/dicarboxylate symporter; anion transporter 2052442..2053818 Pseudoalteromonas atlantica T6c 4171926 YP_661293.1 CDS Patl_1718 NC_008228.1 2054086 2054412 D KEGG: mba:Mbar_A1318 hypothetical protein; hypothetical protein 2054086..2054412 Pseudoalteromonas atlantica T6c 4171927 YP_661294.1 CDS Patl_1719 NC_008228.1 2054459 2055457 R PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: rpb:RPB_0879 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2054459..2055457) Pseudoalteromonas atlantica T6c 4171928 YP_661295.1 CDS Patl_1720 NC_008228.1 2055873 2057462 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: amine oxidase; KEGG: par:Psyc_1152 flavin monoamine oxidase related protein; twin-arginine translocation pathway signal protein 2055873..2057462 Pseudoalteromonas atlantica T6c 4171929 YP_661296.1 CDS Patl_1721 NC_008228.1 2057452 2058066 D PFAM: cytochrome c, class I; KEGG: sil:SPOA0151 cytochrome c family protein; cytochrome c, class I 2057452..2058066 Pseudoalteromonas atlantica T6c 4171930 YP_661297.1 CDS Patl_1722 NC_008228.1 2058085 2058597 D PFAM: Endoribonuclease L-PSP; KEGG: xcb:XC_0888 TdcF protein; endoribonuclease L-PSP 2058085..2058597 Pseudoalteromonas atlantica T6c 4171931 YP_661298.1 CDS Patl_1723 NC_008228.1 2058701 2061307 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC1093 TonB-dependent receptor, putative; TonB-dependent receptor 2058701..2061307 Pseudoalteromonas atlantica T6c 4171932 YP_661299.1 CDS Patl_1724 NC_008228.1 2061402 2062829 R KEGG: ilo:IL1521 hypothetical protein; hypothetical protein complement(2061402..2062829) Pseudoalteromonas atlantica T6c 4171933 YP_661300.1 CDS Patl_1725 NC_008228.1 2062829 2066311 R TIGRFAM: transcription-repair coupling factor; PFAM: helicase-like transcription factor CarD TRCF type III restriction enzyme, res subunit DEAD/DEAH box helicase-like; KEGG: pha:PSHAa1836 transcription-repair ATP-dependent coupling factor; transcription-repair coupling factor complement(2062829..2066311) Pseudoalteromonas atlantica T6c 4171934 YP_661301.1 CDS Patl_1726 NC_008228.1 2066317 2066913 R KEGG: cps:CPS_3480 hypothetical protein; hypothetical protein complement(2066317..2066913) Pseudoalteromonas atlantica T6c 4171935 YP_661302.1 CDS Patl_1727 NC_008228.1 2067274 2068485 D TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: ppr:PBPRA2390 putative ABC transporter integral membrane subunit; LolC/E family lipoprotein releasing system, transmembrane protein 2067274..2068485 Pseudoalteromonas atlantica T6c 4171936 YP_661303.1 CDS Patl_1728 NC_008228.1 2068641 2069198 D KEGG: cps:CPS_3834 putative hypoxanthine phosphoribosyltransferase; putative hypoxanthine phosphoribosyltransferase 2068641..2069198 Pseudoalteromonas atlantica T6c 4171937 YP_661304.1 CDS Patl_1729 NC_008228.1 2069432 2069965 R PFAM: YHS; KEGG: cps:CPS_0814 hypothetical protein; hypothetical protein complement(2069432..2069965) Pseudoalteromonas atlantica T6c 4171938 YP_661305.1 CDS Patl_1730 NC_008228.1 2070330 2070836 D PFAM: protein of unknown function DUF419; KEGG: hch:HCH_06934 hypothetical protein; hypothetical protein 2070330..2070836 Pseudoalteromonas atlantica T6c 4171939 YP_661306.1 CDS Patl_1731 NC_008228.1 2071100 2071297 D PFAM: CsbD-like; KEGG: pha:PSHAa2218 hypothetical protein; CsbD-like protein 2071100..2071297 Pseudoalteromonas atlantica T6c 4173659 YP_661307.1 CDS Patl_1732 NC_008228.1 2071648 2071809 D PFAM: protein of unknown function DUF1328; KEGG: pha:PSHAa0537 hypothetical protein; hypothetical protein 2071648..2071809 Pseudoalteromonas atlantica T6c 4173660 YP_661308.1 CDS Patl_1733 NC_008228.1 2072358 2072969 R hypothetical protein complement(2072358..2072969) Pseudoalteromonas atlantica T6c 4173661 YP_661309.1 CDS Patl_1734 NC_008228.1 2072951 2073967 R hypothetical protein complement(2072951..2073967) Pseudoalteromonas atlantica T6c 4173662 YP_661310.1 CDS Patl_1735 NC_008228.1 2074186 2075169 R PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAb0050 hypothetical protein; hypothetical protein complement(2074186..2075169) Pseudoalteromonas atlantica T6c 4173663 YP_661311.1 CDS Patl_1736 NC_008228.1 2076094 2077383 D KEGG: lmf:LMOf2365_2347 hypothetical protein; hypothetical protein 2076094..2077383 Pseudoalteromonas atlantica T6c 4173664 YP_661312.1 CDS Patl_1737 NC_008228.1 2077666 2078073 D hypothetical protein 2077666..2078073 Pseudoalteromonas atlantica T6c 4173665 YP_661313.1 CDS Patl_1738 NC_008228.1 2079168 2079488 D KEGG: eli:ELI_11880 FMN oxidoreductase; hypothetical protein 2079168..2079488 Pseudoalteromonas atlantica T6c 4173667 YP_661314.1 CDS smpB NC_008228.1 2079646 2080122 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(2079646..2080122) Pseudoalteromonas atlantica T6c 4173668 YP_661315.1 CDS Patl_1740 NC_008228.1 2080248 2080679 D PFAM: cyclase/dehydrase; KEGG: vpa:VP0645 hypothetical protein; cyclase/dehydrase 2080248..2080679 Pseudoalteromonas atlantica T6c 4173669 YP_661316.1 CDS Patl_1741 NC_008228.1 2080676 2081002 D PFAM: protein of unknown function UPF0125; KEGG: ilo:IL0896 hypothetical protein; hypothetical protein 2080676..2081002 Pseudoalteromonas atlantica T6c 4173670 YP_661317.1 CDS Patl_1742 NC_008228.1 2081043 2081726 R TIGRFAM: conserved hypothetical protein; KEGG: son:SO1579 hypothetical protein; hypothetical protein complement(2081043..2081726) Pseudoalteromonas atlantica T6c 4173671 YP_661318.1 CDS Patl_1743 NC_008228.1 2081924 2082736 R PFAM: protein of unknown function DUF299; KEGG: cps:CPS_3013 hypothetical protein; hypothetical protein complement(2081924..2082736) Pseudoalteromonas atlantica T6c 4173672 YP_661319.1 CDS Patl_1744 NC_008228.1 2082948 2085323 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2082948..2085323 Pseudoalteromonas atlantica T6c 4173673 YP_661320.1 CDS Patl_1745 NC_008228.1 2085491 2085739 R hypothetical protein complement(2085491..2085739) Pseudoalteromonas atlantica T6c 4173674 YP_661321.1 CDS Patl_1746 NC_008228.1 2085974 2089015 D PFAM: FAD linked oxidase-like; KEGG: ppr:PBPRA1294 hypothetical Fe-S oxidoreductase; FAD linked oxidase-like protein 2085974..2089015 Pseudoalteromonas atlantica T6c 4173675 YP_661322.1 CDS Patl_1747 NC_008228.1 2089239 2090642 R PFAM: beta-lactamase-like RNA-metabolising metallo-beta-lactamase; KEGG: pae:PA3614 metallo-beta-lactamase family protein; RNA-metabolising metallo-beta-lactamase complement(2089239..2090642) Pseudoalteromonas atlantica T6c 4173676 YP_661323.1 CDS Patl_1748 NC_008228.1 2090904 2092739 D PFAM: GCN5-related N-acetyltransferase acetyl-CoA hydrolase/transferase; KEGG: ilo:IL2297 4-hydroxybutyrate CoA-transferase (N-terminal) fused to acetyltransferase (C-terminal) domain of GNAT superfamily; acetyl-CoA hydrolase/transferase 2090904..2092739 Pseudoalteromonas atlantica T6c 4173677 YP_661324.1 CDS Patl_1749 NC_008228.1 2092742 2093659 D PFAM: histone deacetylase superfamily; KEGG: eba:ebA775 hypothetical protein; histone deacetylase superfamily protein 2092742..2093659 Pseudoalteromonas atlantica T6c 4173678 YP_661325.1 CDS Patl_1750 NC_008228.1 2093787 2095769 R KEGG: nmu:Nmul_A2207 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4 PAS fold; SMART: PAS; PAS/PAC sensor hybrid histidine kinase complement(2093787..2095769) Pseudoalteromonas atlantica T6c 4173679 YP_661326.1 CDS Patl_1751 NC_008228.1 2096116 2096619 D KEGG: cbu:CBU_1950 hypothetical protein; hypothetical protein 2096116..2096619 Pseudoalteromonas atlantica T6c 4173680 YP_661327.1 CDS Patl_1752 NC_008228.1 2096910 2097086 R KEGG: sil:SPO3064 hypothetical protein; hypothetical protein complement(2096910..2097086) Pseudoalteromonas atlantica T6c 4173681 YP_661328.1 CDS Patl_1753 NC_008228.1 2097332 2098333 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: pst:PSPTO0754 alcohol dehydrogenase, zinc-containing; NADPH:quinone reductase 2097332..2098333 Pseudoalteromonas atlantica T6c 4173682 YP_661329.1 CDS Patl_1754 NC_008228.1 2098564 2099724 D KEGG: ava:Ava_4197 hypothetical protein; hypothetical protein 2098564..2099724 Pseudoalteromonas atlantica T6c 4173683 YP_661330.1 CDS Patl_1755 NC_008228.1 2099975 2100631 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: pha:PSHAa1831 AhpC-TSA; redoxin 2099975..2100631 Pseudoalteromonas atlantica T6c 4173684 YP_661331.1 CDS Patl_1756 NC_008228.1 2100863 2104363 D TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: vvy:VV2615 exonuclease V gamma subunit; exodeoxyribonuclease V subunit gamma 2100863..2104363 Pseudoalteromonas atlantica T6c 4173685 YP_661332.1 CDS Patl_1757 NC_008228.1 2104360 2108322 D TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: pha:PSHAa1858 exonuclease V, beta chain with RecC and RecD: 5' and 3' nuclease, ATPase, recombinase, helicase; exodeoxyribonuclease V subunit beta 2104360..2108322 Pseudoalteromonas atlantica T6c 4173686 YP_661333.1 CDS Patl_1758 NC_008228.1 2108316 2110529 D TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: vpa:VP2373 exodeoxyribonuclease V, 67 kDa subunit; exodeoxyribonuclease V subunit alpha 2108316..2110529 Pseudoalteromonas atlantica T6c 4173687 YP_661334.1 CDS Patl_1759 NC_008228.1 2110518 2115323 R hypothetical protein complement(2110518..2115323) Pseudoalteromonas atlantica T6c 4173688 YP_661335.1 CDS Patl_1760 NC_008228.1 2115488 2115880 D KEGG: vch:VC1686 hypothetical protein; hypothetical protein 2115488..2115880 Pseudoalteromonas atlantica T6c 4173689 YP_661336.1 CDS Patl_1761 NC_008228.1 2116000 2116494 D KEGG: pha:PSHAb0046 putative orphan protein; hypothetical protein 2116000..2116494 Pseudoalteromonas atlantica T6c 4173690 YP_661337.1 CDS Patl_1762 NC_008228.1 2116612 2118330 D TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V aromatic amino acid beta-eliminating lyase/threonine aldolase Fe-S metabolism associated SufE; KEGG: cps:CPS_2211 putative selenocysteine lyase; SufS subfamily cysteine desulfurase 2116612..2118330 Pseudoalteromonas atlantica T6c 4173691 YP_661338.1 CDS Patl_1763 NC_008228.1 2118399 2118938 R PFAM: isochorismatase hydrolase; KEGG: dps:DP1719 hypothetical protein; isochorismatase hydrolase complement(2118399..2118938) Pseudoalteromonas atlantica T6c 4173692 YP_661339.1 CDS Patl_1764 NC_008228.1 2119189 2120223 D KEGG: rso:RSc0798 putative purine nucleoside permease protein; putative purine nucleoside permease 2119189..2120223 Pseudoalteromonas atlantica T6c 4173693 YP_661340.1 CDS Patl_1765 NC_008228.1 2120291 2120515 R KEGG: cps:CPS_0070 hypothetical protein; hypothetical protein complement(2120291..2120515) Pseudoalteromonas atlantica T6c 4173694 YP_661341.1 CDS Patl_1766 NC_008228.1 2120761 2121393 D KEGG: ilo:IL0571 hypothetical protein; hypothetical protein 2120761..2121393 Pseudoalteromonas atlantica T6c 4173695 YP_661342.1 CDS Patl_1767 NC_008228.1 2121393 2122112 D KEGG: pha:PSHAa1929 hypothetical protein; hypothetical protein 2121393..2122112 Pseudoalteromonas atlantica T6c 4173696 YP_661343.1 CDS Patl_1768 NC_008228.1 2122155 2122454 R KEGG: pha:PSHAa0636 hypothetical protein; hypothetical protein complement(2122155..2122454) Pseudoalteromonas atlantica T6c 4172016 YP_661344.1 CDS Patl_1769 NC_008228.1 2122548 2123942 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: son:SO4457 GGDEF domain protein; diguanylate cyclase complement(2122548..2123942) Pseudoalteromonas atlantica T6c 4172017 YP_661345.1 CDS Patl_1770 NC_008228.1 2124107 2125366 R KEGG: pha:PSHAb0237 putative glycosyltransferase; putative glycosyltransferase complement(2124107..2125366) Pseudoalteromonas atlantica T6c 4172018 YP_661346.1 CDS Patl_1771 NC_008228.1 2125371 2126459 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: gsu:GSU2632 GGDEF domain protein; diguanylate cyclase complement(2125371..2126459) Pseudoalteromonas atlantica T6c 4172019 YP_661347.1 CDS Patl_1772 NC_008228.1 2126733 2127800 D TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE-like; KEGG: rso:RS03188 2-dehydropantoate 2-reductase; 2-dehydropantoate 2-reductase 2126733..2127800 Pseudoalteromonas atlantica T6c 4172020 YP_661348.1 CDS Patl_1773 NC_008228.1 2127805 2128539 R PFAM: protein of unknown function DUF540; KEGG: son:SO2899 cysZ protein; hypothetical protein complement(2127805..2128539) Pseudoalteromonas atlantica T6c 4172021 YP_661349.1 CDS Patl_1774 NC_008228.1 2128778 2132272 D TIGRFAM: chromosome segregation protein SMC; PFAM: SMC protein-like; KEGG: ilo:IL1702 chromosome segregation ATPase, sms; chromosome segregation protein SMC 2128778..2132272 Pseudoalteromonas atlantica T6c 4172022 YP_661350.1 CDS Patl_1775 NC_008228.1 2132297 2133631 D TIGRFAM: cell division protein ZipA; PFAM: ZipA-like, FtsZ-binding region; KEGG: cps:CPS_3467 putative cell division protein ZipA; cell division protein ZipA 2132297..2133631 Pseudoalteromonas atlantica T6c 4172023 YP_661351.1 CDS Patl_1776 NC_008228.1 2133682 2135715 D KEGG: pha:PSHAa1083 NAD-dependent DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT NAD-dependent DNA ligase zinc-finger, NAD-dependent DNA ligase C4-type NAD-dependent DNA ligase, OB-fold; SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase 2133682..2135715 Pseudoalteromonas atlantica T6c 4172024 YP_661352.1 CDS Patl_1777 NC_008228.1 2135719 2136057 D KEGG: ilo:IL1450 hypothetical protein; hypothetical protein 2135719..2136057 Pseudoalteromonas atlantica T6c 4172025 YP_661353.1 CDS Patl_1778 NC_008228.1 2136119 2136661 R KEGG: ilo:IL1515 hypothetical protein; hypothetical protein complement(2136119..2136661) Pseudoalteromonas atlantica T6c 4172026 YP_661354.1 CDS Patl_1779 NC_008228.1 2136711 2138999 D TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase-like ComEC/Rec2-related protein; KEGG: cps:CPS_2124 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-related competence protein ComEC/Rec2 2136711..2138999 Pseudoalteromonas atlantica T6c 4172027 YP_661355.1 CDS Patl_1780 NC_008228.1 2139095 2140852 D KEGG: ilo:IL1513 ABC-type multidrug transport system, ATPase and permease components; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 2139095..2140852 Pseudoalteromonas atlantica T6c 4172028 YP_661356.1 CDS Patl_1781 NC_008228.1 2140915 2141832 D KEGG: hin:HI0059 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase 2140915..2141832 Pseudoalteromonas atlantica T6c 4172029 YP_661357.1 CDS Patl_1782 NC_008228.1 2141841 2142044 D PFAM: protein of unknown function DUF343; KEGG: ppr:PBPRA2383 conserved hypothetical protein; hypothetical protein 2141841..2142044 Pseudoalteromonas atlantica T6c 4172030 YP_661358.1 CDS Patl_1783 NC_008228.1 2142057 2142821 D KEGG: ecj:JW0901 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase 2142057..2142821 Pseudoalteromonas atlantica T6c 4172031 YP_661359.1 CDS Patl_1784 NC_008228.1 2142878 2143876 D catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase 2142878..2143876 Pseudoalteromonas atlantica T6c 4172032 YP_661360.1 CDS Patl_1785 NC_008228.1 2144035 2145813 D TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: vvy:VV1542 GGDEF family protein; diguanylate cyclase 2144035..2145813 Pseudoalteromonas atlantica T6c 4172033 YP_661361.1 CDS Patl_1786 NC_008228.1 2145818 2146246 D PFAM: GCN5-related N-acetyltransferase; KEGG: ppr:PBPRB0044 hypothetical protein; N-acetyltransferase GCN5 2145818..2146246 Pseudoalteromonas atlantica T6c 4172034 YP_661362.1 CDS Patl_1787 NC_008228.1 2146266 2146766 D KEGG: vch:VC2146 hypothetical protein; hypothetical protein 2146266..2146766 Pseudoalteromonas atlantica T6c 4172035 YP_661363.1 CDS Patl_1788 NC_008228.1 2146933 2147346 R hypothetical protein complement(2146933..2147346) Pseudoalteromonas atlantica T6c 4172036 YP_661364.1 CDS Patl_1789 NC_008228.1 2147370 2148311 R PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ilo:IL1093 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2147370..2148311) Pseudoalteromonas atlantica T6c 4172037 YP_661365.1 CDS Patl_1790 NC_008228.1 2148436 2149173 D hypothetical protein 2148436..2149173 Pseudoalteromonas atlantica T6c 4172038 YP_661366.1 CDS Patl_1791 NC_008228.1 2149198 2149989 R PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: vch:VC2311 HesA/MoeB/ThiF family protein; UBA/THIF-type NAD/FAD binding domain-containing protein complement(2149198..2149989) Pseudoalteromonas atlantica T6c 4172039 YP_661367.1 CDS Patl_1792 NC_008228.1 2150274 2151695 D KEGG: yps:YPTB1011 mannose-1-phosphate guanylyltransferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II Nucleotidyl transferase Cupin 2, conserved barrel; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 2150274..2151695 Pseudoalteromonas atlantica T6c 4172040 YP_661368.1 CDS Patl_1793 NC_008228.1 2151724 2153169 D PFAM: phosphoglucomutase/phosphomannomutase C terminal phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sec:SC2105 phosphomannomutase in colanic acid gene cluster; phosphomannomutase 2151724..2153169 Pseudoalteromonas atlantica T6c 4172041 YP_661369.1 CDS Patl_1794 NC_008228.1 2153263 2154543 R KEGG: ilo:IL1508 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; citrate synthase I complement(2153263..2154543) Pseudoalteromonas atlantica T6c 4172042 YP_661370.1 CDS Patl_1795 NC_008228.1 2154956 2155330 D PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: pha:PSHAa1651 putative succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhD; succinate dehydrogenase, cytochrome b subunit 2154956..2155330 Pseudoalteromonas atlantica T6c 4172043 YP_661371.1 CDS Patl_1796 NC_008228.1 2155324 2155671 D KEGG: pha:PSHAa1650 putative succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhC; putative succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhC 2155324..2155671 Pseudoalteromonas atlantica T6c 4172044 YP_661372.1 CDS sdhA NC_008228.1 2155672 2157441 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 2155672..2157441 Pseudoalteromonas atlantica T6c 4172045 YP_661373.1 CDS Patl_1798 NC_008228.1 2157456 2158166 D TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: yps:YPTB1146 succinate dehydrogenase iron-sulfur protein; succinate dehydrogenase and fumarate reductase iron-sulfur protein 2157456..2158166 Pseudoalteromonas atlantica T6c 4172046 YP_661374.1 CDS sucA NC_008228.1 2158344 2161166 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 2158344..2161166 Pseudoalteromonas atlantica T6c 4172047 YP_661375.1 CDS Patl_1800 NC_008228.1 2161176 2162663 D TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment catalytic domain of components of various dehydrogenase complexes E3 binding; KEGG: pha:PSHAa1646 dihydrolipoyltranssuccinate transferase, component of the 2-oxoglutarate dehydrogenase complex; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 2161176..2162663 Pseudoalteromonas atlantica T6c 4172048 YP_661376.1 CDS sucC NC_008228.1 2162787 2163956 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 2162787..2163956 Pseudoalteromonas atlantica T6c 4172049 YP_661377.1 CDS Patl_1802 NC_008228.1 2163953 2164825 D TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding ATP-citrate lyase/succinyl-CoA ligase; KEGG: ilo:IL1500 succinyl-CoA synthetase, alpha subunit; succinyl-CoA synthetase subunit alpha 2163953..2164825 Pseudoalteromonas atlantica T6c 4172050 YP_661378.1 CDS Patl_1803 NC_008228.1 2165345 2167540 R PFAM: peptidase S15 peptidase S9, prolyl oligopeptidase active site region; KEGG: xcv:XCV0270 putative aminopeptidase precursor; peptidase S9, prolyl oligopeptidase active site region complement(2165345..2167540) Pseudoalteromonas atlantica T6c 4172051 YP_661379.1 CDS Patl_1804 NC_008228.1 2167608 2169029 R PFAM: FAD linked oxidase-like; KEGG: sme:SMb21415 putative oxidoreductase, oxygen dependent, FAD-dependent protein; FAD linked oxidase-like protein complement(2167608..2169029) Pseudoalteromonas atlantica T6c 4172052 YP_661380.1 CDS Patl_1805 NC_008228.1 2169191 2169901 D PFAM: helix-turn-helix, HxlR type; KEGG: mlo:mlr1855 hypothetical protein; HxlR family transcriptional regulator 2169191..2169901 Pseudoalteromonas atlantica T6c 4172053 YP_661381.1 CDS Patl_1806 NC_008228.1 2169917 2171314 R KEGG: psp:PSPPH_3703 L-sorbosone dehydrogenase; L-sorbosone dehydrogenase complement(2169917..2171314) Pseudoalteromonas atlantica T6c 4172054 YP_661382.1 CDS Patl_1807 NC_008228.1 2171621 2172403 R SMART: extracellular solute-binding protein, family 3; KEGG: mag:amb0186 ABC-type amino acid transport/signal transduction systems; extracellular solute-binding protein complement(2171621..2172403) Pseudoalteromonas atlantica T6c 4172055 YP_661383.1 CDS Patl_1808 NC_008228.1 2172537 2173541 R PFAM: luciferase-like; KEGG: ret:RHE_CH03476 probable oxidoreductase protein; luciferase-like protein complement(2172537..2173541) Pseudoalteromonas atlantica T6c 4172056 YP_661384.1 CDS Patl_1809 NC_008228.1 2173646 2174341 R alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E complement(2173646..2174341) Pseudoalteromonas atlantica T6c 4172057 YP_661385.1 CDS Patl_1810 NC_008228.1 2174484 2177072 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC0991 TonB-dependent receptor; TonB-dependent receptor complement(2174484..2177072) Pseudoalteromonas atlantica T6c 4172058 YP_661386.1 CDS Patl_1811 NC_008228.1 2177408 2178085 D PFAM: Phosphoglycerate mutase; KEGG: bur:Bcep18194_B3039 phosphoglycerate/bisphosphoglycerate mutase; phosphoglycerate mutase 2177408..2178085 Pseudoalteromonas atlantica T6c 4172059 YP_661387.1 CDS Patl_1812 NC_008228.1 2178101 2179327 D PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: bja:blr2989 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase-like protein 2178101..2179327 Pseudoalteromonas atlantica T6c 4172060 YP_661388.1 CDS Patl_1813 NC_008228.1 2179342 2180376 D PFAM: aminoglycoside phosphotransferase; KEGG: bur:Bcep18194_B3038 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 2179342..2180376 Pseudoalteromonas atlantica T6c 4172061 YP_661389.1 CDS Patl_1814 NC_008228.1 2180434 2181408 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: pfo:Pfl_5445 zinc-containing alcohol dehydrogenase superfamily; zinc-binding alcohol dehydrogenase 2180434..2181408 Pseudoalteromonas atlantica T6c 4172062 YP_661390.1 CDS Patl_1815 NC_008228.1 2181636 2182031 R KEGG: son:SO3645 hypothetical protein; hypothetical protein complement(2181636..2182031) Pseudoalteromonas atlantica T6c 4172063 YP_661391.1 CDS Patl_1816 NC_008228.1 2182608 2183774 R PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: sma:SAV611 putative beta-hydroxylase; aspartyl/asparaginyl beta-hydroxylase complement(2182608..2183774) Pseudoalteromonas atlantica T6c 4172064 YP_661392.1 CDS Patl_1817 NC_008228.1 2183924 2184463 D PFAM: protein of unknown function DUF924; KEGG: cps:CPS_2824 hypothetical protein; hypothetical protein 2183924..2184463 Pseudoalteromonas atlantica T6c 4172065 YP_661393.1 CDS Patl_1818 NC_008228.1 2184581 2186659 R PFAM: peptidase S9, prolyl oligopeptidase active site region WD40-like beta Propeller; KEGG: pha:PSHAb0063 putative peptidase; peptidase S9, prolyl oligopeptidase active site region complement(2184581..2186659) Pseudoalteromonas atlantica T6c 4172066 YP_661394.1 CDS Patl_1819 NC_008228.1 2186895 2187197 D PFAM: protein of unknown function UPF0153; KEGG: pfo:Pfl_4743 protein of unknown function UPF0153; hypothetical protein 2186895..2187197 Pseudoalteromonas atlantica T6c 4172067 YP_661395.1 CDS Patl_1820 NC_008228.1 2187292 2188608 R KEGG: hch:HCH_05761 hypothetical protein; hypothetical protein complement(2187292..2188608) Pseudoalteromonas atlantica T6c 4172068 YP_661396.1 CDS Patl_1822 NC_008228.1 2189984 2192254 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0977 TonB-dependent receptor; TonB-dependent receptor, plug complement(2189984..2192254) Pseudoalteromonas atlantica T6c 4172070 YP_661397.1 CDS Patl_1823 NC_008228.1 2192680 2193705 D PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: cps:CPS_0978 transcription regulator, LacI family; LacI family transcriptional regulator 2192680..2193705 Pseudoalteromonas atlantica T6c 4172071 YP_661398.1 CDS Patl_1824 NC_008228.1 2193807 2195054 D PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_0981 hypothetical protein; major facilitator superfamily transporter 2193807..2195054 Pseudoalteromonas atlantica T6c 4172072 YP_661399.1 CDS Patl_1825 NC_008228.1 2195059 2196588 D PFAM: glycoside hydrolase, family 37; KEGG: cbu:CBU_1346 trehalase; alpha,alpha-trehalase 2195059..2196588 Pseudoalteromonas atlantica T6c 4172073 YP_661400.1 CDS Patl_1826 NC_008228.1 2196716 2199601 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0238 TonB-dependent receptor; TonB-dependent receptor complement(2196716..2199601) Pseudoalteromonas atlantica T6c 4173011 YP_661401.1 CDS Patl_1827 NC_008228.1 2200054 2202789 D SMART: Peptidase M14, carboxypeptidase A; KEGG: ilo:IL0199 conserved secreted Zn-dependent enzyme from deacylase/carboxypeptidase superfamily; peptidase M14, carboxypeptidase A 2200054..2202789 Pseudoalteromonas atlantica T6c 4173012 YP_661402.1 CDS Patl_1828 NC_008228.1 2202982 2203878 R PFAM: putative esterase; KEGG: ppr:PBPRA0783 putative esterase; carboxylesterase complement(2202982..2203878) Pseudoalteromonas atlantica T6c 4173013 YP_661403.1 CDS Patl_1829 NC_008228.1 2203878 2204996 R PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: nmu:Nmul_A2272 zinc-containing alcohol dehydrogenase superfamily; alcohol dehydrogenase GroES-like protein complement(2203878..2204996) Pseudoalteromonas atlantica T6c 4173014 YP_661404.1 CDS Patl_1830 NC_008228.1 2205100 2205549 R hypothetical protein complement(2205100..2205549) Pseudoalteromonas atlantica T6c 4173015 YP_661405.1 CDS Patl_1831 NC_008228.1 2205665 2206564 R PFAM: amidohydrolase 2; KEGG: cps:CPS_1174 conserved hypothetical protein; amidohydrolase 2 complement(2205665..2206564) Pseudoalteromonas atlantica T6c 4173016 YP_661406.1 CDS Patl_1832 NC_008228.1 2206622 2207374 R PFAM: short-chain dehydrogenase/reductase SDR 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: cps:CPS_1175 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(2206622..2207374) Pseudoalteromonas atlantica T6c 4173017 YP_661407.1 CDS Patl_1833 NC_008228.1 2207450 2207899 R KEGG: gsu:GSU0250 hypothetical protein; hypothetical protein complement(2207450..2207899) Pseudoalteromonas atlantica T6c 4173018 YP_661408.1 CDS Patl_1834 NC_008228.1 2207902 2209323 R KEGG: vch:VC2620 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family MiaB-like tRNA modifying enzyme YliG; PFAM: protein of unknown function UPF0004 Radical SAM; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying enzyme YliG complement(2207902..2209323) Pseudoalteromonas atlantica T6c 4173019 YP_661409.1 CDS Patl_1835 NC_008228.1 2209662 2215199 R KEGG: pst:PSPTO3229 filamentous hemagglutinin, intein-containing, putative; hypothetical protein complement(2209662..2215199) Pseudoalteromonas atlantica T6c 4173020 YP_661410.1 CDS Patl_1836 NC_008228.1 2215620 2219645 R PFAM: helix-turn-helix, AraC type response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: bth:BT3334 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system'); two component AraC family transcriptional regulator complement(2215620..2219645) Pseudoalteromonas atlantica T6c 4173021 YP_661411.1 CDS Patl_1837 NC_008228.1 2220064 2221656 R PFAM: L-lactate permease; KEGG: ppr:PBPRA2223 hypothetical L-lactate permease (LctP); L-lactate permease complement(2220064..2221656) Pseudoalteromonas atlantica T6c 4173022 YP_661412.1 CDS Patl_1838 NC_008228.1 2222121 2222408 D KEGG: dps:DP1779 hypothetical protein; hypothetical protein 2222121..2222408 Pseudoalteromonas atlantica T6c 4173023 YP_661413.1 CDS Patl_1839 NC_008228.1 2222670 2225138 D TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: xac:XAC1186 excinuclease ABC subunit A; excinuclease ABC subunit A 2222670..2225138 Pseudoalteromonas atlantica T6c 4173024 YP_661414.1 CDS Patl_1840 NC_008228.1 2225731 2228373 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: xcb:XC_2484 TonB-dependent receptor; TonB-dependent receptor 2225731..2228373 Pseudoalteromonas atlantica T6c 4173025 YP_661415.1 CDS Patl_1841 NC_008228.1 2228429 2230093 D PFAM: sulfatase; KEGG: rba:RB2135 heparan N-sulfatase; sulfatase 2228429..2230093 Pseudoalteromonas atlantica T6c 4173026 YP_661416.1 CDS Patl_1842 NC_008228.1 2230172 2231752 D PFAM: sulfatase; KEGG: bth:BT3333 arylsulfatase A precursor (ASA); sulfatase 2230172..2231752 Pseudoalteromonas atlantica T6c 4173027 YP_661417.1 CDS Patl_1843 NC_008228.1 2232104 2232943 R TIGRFAM: integron integrase; PFAM: phage integrase; KEGG: pha:PSHAa1461 integrase; integron integrase complement(2232104..2232943) Pseudoalteromonas atlantica T6c 4173028 YP_661418.1 CDS Patl_1844 NC_008228.1 2233243 2233686 D hypothetical protein 2233243..2233686 Pseudoalteromonas atlantica T6c 4173029 YP_661419.1 CDS Patl_1845 NC_008228.1 2233717 2234673 R PFAM: transposase, IS111A/IS1328/IS1533 transposase IS116/IS110/IS902; KEGG: cps:CPS_2742 ISCps7, transposase; transposase IS116/IS110/IS902 complement(2233717..2234673) Pseudoalteromonas atlantica T6c 4173030 YP_661420.1 CDS Patl_1846 NC_008228.1 2235002 2236210 R PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase; transposase, IS4 complement(2235002..2236210) Pseudoalteromonas atlantica T6c 4173031 YP_661421.1 CDS Patl_1847 NC_008228.1 2236333 2236671 D hypothetical protein 2236333..2236671 Pseudoalteromonas atlantica T6c 4173032 YP_661422.1 CDS Patl_1848 NC_008228.1 2237053 2238036 R PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAb0050 hypothetical protein; hypothetical protein complement(2237053..2238036) Pseudoalteromonas atlantica T6c 4173033 YP_661423.1 CDS Patl_1849 NC_008228.1 2238080 2238532 R KEGG: ppr:PBPRB1699 hypothetical transposase; putative transposase complement(2238080..2238532) Pseudoalteromonas atlantica T6c 4173034 YP_661424.1 CDS Patl_1850 NC_008228.1 2238594 2238938 D hypothetical protein 2238594..2238938 Pseudoalteromonas atlantica T6c 4173035 YP_661425.1 CDS Patl_1851 NC_008228.1 2239658 2240572 D PFAM: protein of unknown function DUF1080; KEGG: nar:Saro_0775 protein of unknown function DUF1080; hypothetical protein 2239658..2240572 Pseudoalteromonas atlantica T6c 4173036 YP_661426.1 CDS Patl_1852 NC_008228.1 2240904 2242820 R PFAM: glycoside hydrolase family 2, sugar binding; KEGG: bfr:BF3493 sialic acid-specific 9-O-acetylesterase; glycoside hydrolase complement(2240904..2242820) Pseudoalteromonas atlantica T6c 4173037 YP_661427.1 CDS Patl_1853 NC_008228.1 2242955 2243422 R KEGG: sco:SCO5300 hypothetical protein; hypothetical protein complement(2242955..2243422) Pseudoalteromonas atlantica T6c 4173038 YP_661428.1 CDS Patl_1854 NC_008228.1 2243493 2243783 R unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein complement(2243493..2243783) Pseudoalteromonas atlantica T6c 4173039 YP_661429.1 CDS Patl_1855 NC_008228.1 2244095 2245858 R PFAM: Pyrrolo-quinoline quinone; KEGG: cps:CPS_1887 quinoprotein alcohol dehydrogenase; Pyrrolo-quinoline quinone complement(2244095..2245858) Pseudoalteromonas atlantica T6c 4173040 YP_661430.1 CDS Patl_1856 NC_008228.1 2246056 2246940 R SMART: extracellular solute-binding protein, family 3; KEGG: cps:CPS_1889 hypothetical protein; extracellular solute-binding protein complement(2246056..2246940) Pseudoalteromonas atlantica T6c 4173041 YP_661431.1 CDS Patl_1857 NC_008228.1 2246927 2247367 R KEGG: cps:CPS_1890 cytochrome c550; cytochrome c550 complement(2246927..2247367) Pseudoalteromonas atlantica T6c 4173042 YP_661432.1 CDS Patl_1858 NC_008228.1 2247667 2248884 D KEGG: cps:CPS_1891 hypothetical protein; hypothetical protein 2247667..2248884 Pseudoalteromonas atlantica T6c 4173043 YP_661433.1 CDS Patl_1859 NC_008228.1 2248911 2249900 D TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: cps:CPS_1892 hypothetical protein; hypothetical protein 2248911..2249900 Pseudoalteromonas atlantica T6c 4173044 YP_661434.1 CDS Patl_1860 NC_008228.1 2249897 2250754 D PFAM: ABC transporter related; SMART: ATPase; KEGG: cps:CPS_1893 ABC transporter, ATP-binding protein; ABC transporter-like protein 2249897..2250754 Pseudoalteromonas atlantica T6c 4173045 YP_661435.1 CDS Patl_1861 NC_008228.1 2250751 2251527 D PFAM: ABC-2 type transporter; KEGG: cps:CPS_1894 putative daunorubicin resistance ABC transporter, permease protein; ABC transporter 2250751..2251527 Pseudoalteromonas atlantica T6c 4173046 YP_661436.1 CDS Patl_1862 NC_008228.1 2251723 2254044 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_1926 TonB-dependent receptor; TonB-dependent receptor 2251723..2254044 Pseudoalteromonas atlantica T6c 4173047 YP_661437.1 CDS Patl_1863 NC_008228.1 2254044 2256389 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_1927 TonB dependent receptor; TonB-dependent receptor 2254044..2256389 Pseudoalteromonas atlantica T6c 4173048 YP_661438.1 CDS Patl_1864 NC_008228.1 2256483 2257523 D KEGG: cps:CPS_1928 putative sulfonate ABC transporter, periplasmic sulfonate-binding protein; putative sulfonate ABC transporter, periplasmic sulfonate-binding protein 2256483..2257523 Pseudoalteromonas atlantica T6c 4173049 YP_661439.1 CDS Patl_1865 NC_008228.1 2257576 2258346 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cps:CPS_1929 putative sulfonate ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2257576..2258346 Pseudoalteromonas atlantica T6c 4173050 YP_661440.1 CDS Patl_1866 NC_008228.1 2258339 2259079 D PFAM: ABC transporter related; SMART: ATPase; KEGG: cps:CPS_1930 putative sulfonate ABC transporter, ATP-binding protein; ABC transporter-like protein 2258339..2259079 Pseudoalteromonas atlantica T6c 4173051 YP_661441.1 CDS Patl_1867 NC_008228.1 2259115 2260461 D KEGG: cps:CPS_1702 hypothetical protein; hypothetical protein 2259115..2260461 Pseudoalteromonas atlantica T6c 4173052 YP_661442.1 CDS Patl_1868 NC_008228.1 2260647 2261804 D KEGG: cps:CPS_1931 hypothetical protein; hypothetical protein 2260647..2261804 Pseudoalteromonas atlantica T6c 4173053 YP_661443.1 CDS Patl_1869 NC_008228.1 2261841 2262161 D PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: pca:Pcar_0984 hypothetical protein; ethyl tert-butyl ether degradation EthD 2261841..2262161 Pseudoalteromonas atlantica T6c 4173054 YP_661444.1 CDS Patl_1870 NC_008228.1 2262298 2262954 D PFAM: regulatory protein, LuxR response regulator receiver; KEGG: cps:CPS_1932 DNA-binding response regulator; two component LuxR family transcriptional regulator 2262298..2262954 Pseudoalteromonas atlantica T6c 4173055 YP_661445.1 CDS Patl_1871 NC_008228.1 2262951 2265521 R KEGG: cps:CPS_1882 sensory box sensor histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4; SMART: PAS PAC motif Response regulator receiver; PAS/PAC sensor hybrid histidine kinase complement(2262951..2265521) Pseudoalteromonas atlantica T6c 4173056 YP_661446.1 CDS Patl_1872 NC_008228.1 2265518 2266663 R PFAM: Domain of unknown function DUF1745; KEGG: cps:CPS_1883 hypothetical protein; hypothetical protein complement(2265518..2266663) Pseudoalteromonas atlantica T6c 4173057 YP_661447.1 CDS Patl_1873 NC_008228.1 2266877 2268955 R PFAM: FMN-binding; KEGG: cps:CPS_1884 putative regulatory protein NosR; FMN-binding protein complement(2266877..2268955) Pseudoalteromonas atlantica T6c 4173058 YP_661448.1 CDS Patl_1874 NC_008228.1 2269022 2270542 R PFAM: aldehyde dehydrogenase; KEGG: cps:CPS_1885 aldehyde dehydrogenase family protein; aldehyde dehydrogenase complement(2269022..2270542) Pseudoalteromonas atlantica T6c 4173059 YP_661449.1 CDS Patl_1875 NC_008228.1 2270838 2271473 R PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase Male sterility-like; KEGG: pha:PSHAa2082 hypothetical protein; NAD-dependent epimerase/dehydratase complement(2270838..2271473) Pseudoalteromonas atlantica T6c 4173060 YP_661450.1 CDS Patl_1876 NC_008228.1 2271868 2272224 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3403 ribosomal subunit interface protein; sigma 54 modulation protein/ribosomal protein S30EA 2271868..2272224 Pseudoalteromonas atlantica T6c 4173061 YP_661451.1 CDS Patl_1877 NC_008228.1 2272426 2272656 D KEGG: pha:PSHAa2212 hypothetical protein; hypothetical protein 2272426..2272656 Pseudoalteromonas atlantica T6c 4173062 YP_661452.1 CDS Patl_1878 NC_008228.1 2272764 2273681 R PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pae:PA2551 probable transcriptional regulator; LysR family transcriptional regulator complement(2272764..2273681) Pseudoalteromonas atlantica T6c 4173063 YP_661453.1 CDS asnC NC_008228.1 2273919 2275316 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(2273919..2275316) Pseudoalteromonas atlantica T6c 4173064 YP_661454.1 CDS Patl_1880 NC_008228.1 2275574 2275960 D KEGG: ilo:IL1326 hypothetical protein; hypothetical protein 2275574..2275960 Pseudoalteromonas atlantica T6c 4173065 YP_661455.1 CDS Patl_1881 NC_008228.1 2276150 2276461 D hypothetical protein 2276150..2276461 Pseudoalteromonas atlantica T6c 4173066 YP_661456.1 CDS Patl_1882 NC_008228.1 2276605 2277636 R TIGRFAM: cysteine synthases cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: mba:Mbar_A2422 cysteine synthase; cysteine synthase-like protein complement(2276605..2277636) Pseudoalteromonas atlantica T6c 4173067 YP_661457.1 CDS Patl_1883 NC_008228.1 2277778 2278230 D PFAM: regulatory proteins, AsnC/Lrp; KEGG: reu:Reut_A0453 regulatory proteins, AsnC/Lrp; AsnC family transcriptional regulator 2277778..2278230 Pseudoalteromonas atlantica T6c 4173068 YP_661458.1 CDS Patl_1884 NC_008228.1 2278396 2279769 D PFAM: Na+/H+ antiporter NhaC; KEGG: cps:CPS_4723 Na+/H+ antiporter family protein; Na+/H+ antiporter NhaC 2278396..2279769 Pseudoalteromonas atlantica T6c 4173069 YP_661459.1 CDS Patl_1885 NC_008228.1 2279874 2281577 D KEGG: tcx:Tcr_1715 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 2279874..2281577 Pseudoalteromonas atlantica T6c 4172730 YP_661460.1 CDS Patl_1886 NC_008228.1 2281737 2282477 R TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; KEGG: cps:CPS_3794 UDP-2,3-diacylglucosamine hydrolase; UDP-2,3-diacylglucosamine hydrolase complement(2281737..2282477) Pseudoalteromonas atlantica T6c 4172731 YP_661461.1 CDS Patl_1887 NC_008228.1 2282531 2283025 R PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: yps:YPTB1034 peptidyl-prolyl cis-trans isomerase B; peptidyl-prolyl isomerase complement(2282531..2283025) Pseudoalteromonas atlantica T6c 4172732 YP_661462.1 CDS cysS NC_008228.1 2283211 2284605 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2283211..2284605 Pseudoalteromonas atlantica T6c 4172733 YP_661463.1 CDS Patl_1889 NC_008228.1 2285138 2286502 D PFAM: filamentation induced by cAMP protein Fic; KEGG: pfo:Pfl_1081 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 2285138..2286502 Pseudoalteromonas atlantica T6c 4172734 YP_661464.1 CDS Patl_1890 NC_008228.1 2287170 2287613 R KEGG: pha:PSHAa1883 hypothetical protein; hypothetical protein complement(2287170..2287613) Pseudoalteromonas atlantica T6c 4172735 YP_661465.1 CDS Patl_1891 NC_008228.1 2287692 2287973 R PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAa1474 hypothetical protein; hypothetical protein complement(2287692..2287973) Pseudoalteromonas atlantica T6c 4172736 YP_661466.1 CDS Patl_1892 NC_008228.1 2288083 2288232 R KEGG: pha:PSHAb0050 hypothetical protein; hypothetical protein complement(2288083..2288232) Pseudoalteromonas atlantica T6c 4172737 YP_661467.1 CDS Patl_1893 NC_008228.1 2289471 2289971 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_1846 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 2289471..2289971 Pseudoalteromonas atlantica T6c 4172738 YP_661468.1 CDS Patl_1894 NC_008228.1 2290228 2291889 R PFAM: Peptidoglycan-binding LysM Lytic transglycosylase, catalytic; KEGG: cps:CPS_1998 putative membrane-bound lytic murein transglycosylase; lytic transglycosylase catalytic subunit complement(2290228..2291889) Pseudoalteromonas atlantica T6c 4172739 YP_661469.1 CDS Patl_1895 NC_008228.1 2291918 2292691 R PFAM: beta-lactamase-like; KEGG: neu:NE0138 metallo-beta-lactamase superfamily; hydroxyacylglutathione hydrolase complement(2291918..2292691) Pseudoalteromonas atlantica T6c 4172740 YP_661470.1 CDS Patl_1896 NC_008228.1 2292849 2293598 D KEGG: cps:CPS_2000 hypothetical protein; hypothetical protein 2292849..2293598 Pseudoalteromonas atlantica T6c 4172741 YP_661471.1 CDS metG NC_008228.1 2293695 2295722 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(2293695..2295722) Pseudoalteromonas atlantica T6c 4172742 YP_661472.1 CDS Patl_1898 NC_008228.1 2295841 2296905 D KEGG: ppr:PBPRA1169 hypothetical Mrp protein (ATPases involved in chromosome partitioning); MRP family ATP-binding protein 2295841..2296905 Pseudoalteromonas atlantica T6c 4172743 YP_661473.1 CDS dcd NC_008228.1 2297011 2297610 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 2297011..2297610 Pseudoalteromonas atlantica T6c 4172744 YP_661474.1 CDS Patl_1900 NC_008228.1 2297708 2298658 R PFAM: helix-turn-helix, AraC type; KEGG: vvy:VVA0468 AraC-type DNA-binding domain-containing protein; AraC family transcriptional regulator complement(2297708..2298658) Pseudoalteromonas atlantica T6c 4172745 YP_661475.1 CDS Patl_1901 NC_008228.1 2298773 2299240 D PFAM: YHS; KEGG: cps:CPS_3397 hypothetical protein; hypothetical protein 2298773..2299240 Pseudoalteromonas atlantica T6c 4172746 YP_661476.1 CDS Patl_1902 NC_008228.1 2300730 2301173 R KEGG: son:SO1890 hypothetical protein; hypothetical protein complement(2300730..2301173) Pseudoalteromonas atlantica T6c 4172748 YP_661477.1 CDS Patl_1904 NC_008228.1 2302176 2304242 D KEGG: rba:RB3421 probable beta-agarase [precursor]; agarase 2302176..2304242 Pseudoalteromonas atlantica T6c 4172750 YP_661478.1 CDS Patl_1906 NC_008228.1 2305171 2306280 D PFAM: beta-lactamase; KEGG: bca:BCE2294 penicillin-binding protein, putative; beta-lactamase 2305171..2306280 Pseudoalteromonas atlantica T6c 4172752 YP_661479.1 CDS Patl_1907 NC_008228.1 2307306 2307635 D PFAM: Thioredoxin domain; KEGG: ilo:IL2069 thioredoxin related protein; thioredoxin domain-containing protein 2307306..2307635 Pseudoalteromonas atlantica T6c 4172753 YP_661480.1 CDS Patl_1908 NC_008228.1 2307700 2309031 D hypothetical protein 2307700..2309031 Pseudoalteromonas atlantica T6c 4172754 YP_661481.1 CDS Patl_1909 NC_008228.1 2309153 2309944 R PFAM: helix-turn-helix, AraC type; KEGG: pha:PSHAa2408 transcriptional regulator (AraC/XylS); AraC family transcriptional regulator complement(2309153..2309944) Pseudoalteromonas atlantica T6c 4172755 YP_661482.1 CDS Patl_1910 NC_008228.1 2310185 2311489 D PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa2409 permease; major facilitator superfamily transporter 2310185..2311489 Pseudoalteromonas atlantica T6c 4172756 YP_661483.1 CDS Patl_1911 NC_008228.1 2311767 2313143 D PFAM: aldehyde dehydrogenase; KEGG: pha:PSHAa2402 succinate-semialdehyde dehydrogenase; aldehyde dehydrogenase 2311767..2313143 Pseudoalteromonas atlantica T6c 4172757 YP_661484.1 CDS Patl_1912 NC_008228.1 2313351 2315942 R PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: pha:PSHAa2492 aminopeptidase; peptidase M1, membrane alanine aminopeptidase complement(2313351..2315942) Pseudoalteromonas atlantica T6c 4172758 YP_661485.1 CDS Patl_1913 NC_008228.1 2316179 2317828 R PFAM: AMP-dependent synthetase and ligase; KEGG: reu:Reut_A1398 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(2316179..2317828) Pseudoalteromonas atlantica T6c 4172759 YP_661486.1 CDS Patl_1914 NC_008228.1 2317906 2318673 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bur:Bcep18194_B3036 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2317906..2318673) Pseudoalteromonas atlantica T6c 4172760 YP_661487.1 CDS Patl_1915 NC_008228.1 2318688 2319608 R PFAM: alpha/beta hydrolase fold; KEGG: ccr:CC1175 haloalkane dehalogenase, putative; haloalkane dehalogenase complement(2318688..2319608) Pseudoalteromonas atlantica T6c 4172761 YP_661488.1 CDS Patl_1916 NC_008228.1 2319872 2321980 D PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: ccr:CC3189 fatty oxidation complex, alpha subunit; 3-hydroxyacyl-CoA dehydrogenase 2319872..2321980 Pseudoalteromonas atlantica T6c 4172762 YP_661489.1 CDS Patl_1917 NC_008228.1 2322012 2323196 D KEGG: eli:ELI_12090 putative 3-ketoacyl-CoA thiolase/acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 2322012..2323196 Pseudoalteromonas atlantica T6c 4172763 YP_661490.1 CDS Patl_1918 NC_008228.1 2323244 2325046 D PFAM: acyl-CoA dehydrogenase-like; KEGG: hch:HCH_01686 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase-like protein 2323244..2325046 Pseudoalteromonas atlantica T6c 4172764 YP_661491.1 CDS Patl_1919 NC_008228.1 2325128 2326057 D PFAM: alpha/beta hydrolase fold; KEGG: reu:Reut_A1416 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2325128..2326057 Pseudoalteromonas atlantica T6c 4172765 YP_661492.1 CDS Patl_1920 NC_008228.1 2326160 2327200 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: pha:PSHAb0368 putative GGDEF domain membrane protein; diguanylate cyclase complement(2326160..2327200) Pseudoalteromonas atlantica T6c 4172766 YP_661493.1 CDS Patl_1921 NC_008228.1 2327535 2327930 R KEGG: son:SO3645 hypothetical protein; hypothetical protein complement(2327535..2327930) Pseudoalteromonas atlantica T6c 4172767 YP_661494.1 CDS Patl_1922 NC_008228.1 2328219 2329391 R PFAM: Phytanoyl-CoA dioxygenase; phytanoyl-CoA dioxygenase complement(2328219..2329391) Pseudoalteromonas atlantica T6c 4172768 YP_661495.1 CDS Patl_1923 NC_008228.1 2329515 2330186 D PFAM: regulatory protein, TetR; TetR family transcriptional regulator 2329515..2330186 Pseudoalteromonas atlantica T6c 4172769 YP_661496.1 CDS Patl_1924 NC_008228.1 2330428 2331174 D KEGG: dvu:DVU0852 extracellular solute-binding protein, putative; hypothetical protein 2330428..2331174 Pseudoalteromonas atlantica T6c 4172770 YP_661497.1 CDS Patl_1925 NC_008228.1 2331263 2331676 D hypothetical protein 2331263..2331676 Pseudoalteromonas atlantica T6c 4172771 YP_661498.1 CDS Patl_1926 NC_008228.1 2331753 2332709 D hypothetical protein 2331753..2332709 Pseudoalteromonas atlantica T6c 4172772 YP_661499.1 CDS Patl_1927 NC_008228.1 2332720 2333946 R PFAM: major facilitator superfamily MFS_1; KEGG: tth:TTC1722 multidrug resistance protein 2; major facilitator superfamily transporter complement(2332720..2333946) Pseudoalteromonas atlantica T6c 4172773 YP_661500.1 CDS Patl_1928 NC_008228.1 2334071 2335174 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pfl:PFL_0942 NADH-dependent flavin oxidoreductase, Oye family; NADH:flavin oxidoreductase complement(2334071..2335174) Pseudoalteromonas atlantica T6c 4172774 YP_661501.1 CDS Patl_1929 NC_008228.1 2335266 2335886 R PFAM: regulatory protein, TetR; KEGG: hch:HCH_05799 transcriptional regulator; TetR family transcriptional regulator complement(2335266..2335886) Pseudoalteromonas atlantica T6c 4172775 YP_661502.1 CDS Patl_1930 NC_008228.1 2336793 2337062 R PFAM: RNA-binding region RNP-1 (RNA recognition motif); KEGG: ppr:PBPRB1959 hypothetical protein; RNA-binding region RNP-1 complement(2336793..2337062) Pseudoalteromonas atlantica T6c 4172776 YP_661503.1 CDS Patl_1931 NC_008228.1 2337720 2339606 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2337720..2339606 Pseudoalteromonas atlantica T6c 4172778 YP_661504.1 CDS Patl_1932 NC_008228.1 2339611 2340843 D PFAM: FAD dependent oxidoreductase; KEGG: tcx:Tcr_0147 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2339611..2340843 Pseudoalteromonas atlantica T6c 4172779 YP_661505.1 CDS Patl_1933 NC_008228.1 2340837 2341034 D TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS; KEGG: pha:PSHAa0482 ThiS protein; thiamine biosynthesis protein ThiS 2340837..2341034 Pseudoalteromonas atlantica T6c 4172780 YP_661506.1 CDS thiG NC_008228.1 2341036 2341836 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 2341036..2341836 Pseudoalteromonas atlantica T6c 4172781 YP_661507.1 CDS Patl_1935 NC_008228.1 2341839 2343677 D KEGG: lpp:lpp1526 thiamine-phosphate pyrophosphorylase / phosphomethylpyrimidine kinase; TIGRFAM: thiamine-phosphate pyrophosphorylase phosphomethylpyrimidine kinase; PFAM: thiamine monophosphate synthase Phosphomethylpyrimidine kinase type-1; thiamine-phosphate pyrophosphorylase 2341839..2343677 Pseudoalteromonas atlantica T6c 4172782 YP_661508.1 CDS Patl_1936 NC_008228.1 2343674 2344897 D PFAM: UBA/THIF-type NAD/FAD binding fold MoeZ/MoeB; SMART: Rhodanese-like; KEGG: yps:YPTB0561 putative protein involved in molybdopterin biosynthesis; UBA/THIF-type NAD/FAD binding domain-containing protein 2343674..2344897 Pseudoalteromonas atlantica T6c 4172783 YP_661509.1 CDS Patl_1937 NC_008228.1 2345055 2345432 D KEGG: vch:VCA0645 hypothetical protein; hypothetical protein 2345055..2345432 Pseudoalteromonas atlantica T6c 4172784 YP_661510.1 CDS Patl_1938 NC_008228.1 2346243 2349158 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0993 TonB-dependent receptor; TonB-dependent receptor 2346243..2349158 Pseudoalteromonas atlantica T6c 4172785 YP_661511.1 CDS Patl_1939 NC_008228.1 2349296 2350849 D PFAM: tryptophan halogenase; KEGG: eli:ELI_03185 tryptophan halogenase, putative; tryptophan halogenase 2349296..2350849 Pseudoalteromonas atlantica T6c 4172074 YP_661512.1 CDS Patl_1940 NC_008228.1 2351338 2354370 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_1693 TonB-dependent receptor; TonB-dependent receptor 2351338..2354370 Pseudoalteromonas atlantica T6c 4172075 YP_661513.1 CDS Patl_1941 NC_008228.1 2354466 2358818 D KEGG: cps:CPS_1694 putative pullulanase; TIGRFAM: alpha-1,6-glucosidases, pullulanase-type; PFAM: glycoside hydrolase, family 13-like; pullulanase-type alpha-1,6-glucosidase 2354466..2358818 Pseudoalteromonas atlantica T6c 4172076 YP_661514.1 CDS Patl_1942 NC_008228.1 2359737 2360270 D hypothetical protein 2359737..2360270 Pseudoalteromonas atlantica T6c 4172077 YP_661515.1 CDS Patl_1943 NC_008228.1 2360378 2361640 R PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase; transposase, IS4 complement(2360378..2361640) Pseudoalteromonas atlantica T6c 4172078 YP_661516.1 CDS Patl_1944 NC_008228.1 2361714 2362145 D hypothetical protein 2361714..2362145 Pseudoalteromonas atlantica T6c 4172079 YP_661517.1 CDS Patl_1945 NC_008228.1 2362261 2363523 R PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase; transposase, IS4 complement(2362261..2363523) Pseudoalteromonas atlantica T6c 4172080 YP_661518.1 CDS Patl_1946 NC_008228.1 2363610 2363864 D hypothetical protein 2363610..2363864 Pseudoalteromonas atlantica T6c 4172081 YP_661519.1 CDS Patl_1947 NC_008228.1 2363952 2364404 D hypothetical protein 2363952..2364404 Pseudoalteromonas atlantica T6c 4172082 YP_661520.1 CDS Patl_1948 NC_008228.1 2364536 2365519 R PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAb0050 hypothetical protein; hypothetical protein complement(2364536..2365519) Pseudoalteromonas atlantica T6c 4172083 YP_661521.1 CDS Patl_1949 NC_008228.1 2365562 2366236 R KEGG: ppr:PBPRB1072 hypothetical transposase; putative transposase complement(2365562..2366236) Pseudoalteromonas atlantica T6c 4172084 YP_661522.1 CDS Patl_1950 NC_008228.1 2366890 2367846 R PFAM: transposase, IS111A/IS1328/IS1533 transposase IS116/IS110/IS902; KEGG: cps:CPS_2742 ISCps7, transposase; transposase IS116/IS110/IS902 complement(2366890..2367846) Pseudoalteromonas atlantica T6c 4172085 YP_661523.1 CDS Patl_1951 NC_008228.1 2368697 2369143 D hypothetical protein 2368697..2369143 Pseudoalteromonas atlantica T6c 4172086 YP_661524.1 CDS Patl_1952 NC_008228.1 2369226 2369747 D hypothetical protein 2369226..2369747 Pseudoalteromonas atlantica T6c 4172087 YP_661525.1 CDS Patl_1953 NC_008228.1 2370584 2371141 D hypothetical protein 2370584..2371141 Pseudoalteromonas atlantica T6c 4172088 YP_661526.1 CDS Patl_1954 NC_008228.1 2371246 2371584 R PFAM: protein of unknown function DUF469; KEGG: vpa:VPA0178 hypothetical protein; hypothetical protein complement(2371246..2371584) Pseudoalteromonas atlantica T6c 4172089 YP_661527.1 CDS Patl_1955 NC_008228.1 2371941 2372099 D KEGG: cps:CPS_1538 hypothetical protein; hypothetical protein 2371941..2372099 Pseudoalteromonas atlantica T6c 4172090 YP_661528.1 CDS Patl_1956 NC_008228.1 2372202 2372597 D KEGG: vch:VCA0414 hypothetical protein; hypothetical protein 2372202..2372597 Pseudoalteromonas atlantica T6c 4172091 YP_661529.1 CDS Patl_1957 NC_008228.1 2372742 2374013 R PFAM: amine oxidase; KEGG: pha:PSHAa1280 hypothetical protein; amine oxidase complement(2372742..2374013) Pseudoalteromonas atlantica T6c 4172092 YP_661530.1 CDS Patl_1958 NC_008228.1 2374217 2374837 D KEGG: cps:CPS_1639 hypothetical protein; hypothetical protein 2374217..2374837 Pseudoalteromonas atlantica T6c 4172093 YP_661531.1 CDS Patl_1959 NC_008228.1 2375086 2375868 R hypothetical protein complement(2375086..2375868) Pseudoalteromonas atlantica T6c 4172094 YP_661532.1 CDS Patl_1960 NC_008228.1 2376031 2376801 R PFAM: regulatory proteins, IclR; KEGG: bps:BPSS2127 IclR transcriptional regulator protein; IclR family transcriptional regulator complement(2376031..2376801) Pseudoalteromonas atlantica T6c 4172095 YP_661533.1 CDS Patl_1961 NC_008228.1 2377004 2377786 D PFAM: Phytanoyl-CoA dioxygenase; KEGG: rba:RB7491 probable L-proline 4-hydroxylase; phytanoyl-CoA dioxygenase 2377004..2377786 Pseudoalteromonas atlantica T6c 4172096 YP_661534.1 CDS Patl_1962 NC_008228.1 2377787 2378914 D KEGG: rba:RB9882 similar to peptidylglycine monooxygenase; peptidylglycine monooxygenase-like protein 2377787..2378914 Pseudoalteromonas atlantica T6c 4172097 YP_661535.1 CDS Patl_1963 NC_008228.1 2379175 2379912 R PFAM: SapC; KEGG: cps:CPS_0240 hypothetical protein; protein SapC protein complement(2379175..2379912) Pseudoalteromonas atlantica T6c 4172098 YP_661536.1 CDS Patl_1964 NC_008228.1 2379965 2381560 R PFAM: tryptophan halogenase; KEGG: cps:CPS_0239 putative tryptophan halogenase; tryptophan halogenase complement(2379965..2381560) Pseudoalteromonas atlantica T6c 4172099 YP_661537.1 CDS Patl_1965 NC_008228.1 2381708 2383843 R KEGG: vpa:VPA0953 putative biofilm-associated surface protein; hypothetical protein complement(2381708..2383843) Pseudoalteromonas atlantica T6c 4172100 YP_661538.1 CDS Patl_1966 NC_008228.1 2383917 2387639 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: xac:XAC0144 TonB-dependent receptor; TonB-dependent receptor complement(2383917..2387639) Pseudoalteromonas atlantica T6c 4172101 YP_661539.1 CDS Patl_1967 NC_008228.1 2388517 2388786 R KEGG: bte:BTH_II1368 hypothetical protein; hypothetical protein complement(2388517..2388786) Pseudoalteromonas atlantica T6c 4172102 YP_661540.1 CDS Patl_1968 NC_008228.1 2388901 2389986 R PFAM: Glycosyl hydrolases family 32, N terminal; KEGG: sco:SCO3481 hypothetical protein; hypothetical protein complement(2388901..2389986) Pseudoalteromonas atlantica T6c 4172103 YP_661541.1 CDS Patl_1969 NC_008228.1 2390025 2390981 R PFAM: PfkB; KEGG: pha:PSHAa1745 ketodeoxygluconokinase; PfkB protein complement(2390025..2390981) Pseudoalteromonas atlantica T6c 4172104 YP_661542.1 CDS Patl_1970 NC_008228.1 2390983 2392572 R TIGRFAM: sugar transporter; PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: bth:BT0436 arabinose-proton symporter; sugar transporter complement(2390983..2392572) Pseudoalteromonas atlantica T6c 4172105 YP_661543.1 CDS Patl_1971 NC_008228.1 2393044 2395425 D KEGG: sco:SCO3487 hydrolase; agarase 2393044..2395425 Pseudoalteromonas atlantica T6c 4172106 YP_661544.1 CDS Patl_1972 NC_008228.1 2395790 2396323 D PFAM: methylation; KEGG: vfi:VF0366 MshA, mannose-sensitive haemaglutinin; prepilin-type cleavage/methylation protein 2395790..2396323 Pseudoalteromonas atlantica T6c 4172107 YP_661545.1 CDS Patl_1973 NC_008228.1 2396475 2397740 D PFAM: protein kinase leucine-rich repeat; SMART: Serine/threonine protein kinase Leucine-rich repeat, typical subtype; KEGG: ppr:PBPRA2167 conserved hypothetical protein; serine/threonine protein kinase 2396475..2397740 Pseudoalteromonas atlantica T6c 4172108 YP_661546.1 CDS Patl_1974 NC_008228.1 2397767 2397937 R KEGG: pha:PSHAa1073 hypothetical protein; hypothetical protein complement(2397767..2397937) Pseudoalteromonas atlantica T6c 4172109 YP_661547.1 CDS Patl_1975 NC_008228.1 2398166 2400427 D KEGG: ilo:IL1414 catalase; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; catalase/peroxidase HPI 2398166..2400427 Pseudoalteromonas atlantica T6c 4172110 YP_661548.1 CDS Patl_1976 NC_008228.1 2400552 2401337 R TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pha:PSHAa2944 3-hydroxybutyrate dehydrogenase; 3-hydroxybutyrate dehydrogenase complement(2400552..2401337) Pseudoalteromonas atlantica T6c 4172111 YP_661549.1 CDS Patl_1977 NC_008228.1 2401334 2402443 R KEGG: bte:BTH_I2303 polyhydroxybutyrate depolymerase; polyhydroxybutyrate depolymerase complement(2401334..2402443) Pseudoalteromonas atlantica T6c 4172112 YP_661550.1 CDS Patl_1978 NC_008228.1 2402470 2403672 R catalyzes the formation of O-acetyl -L-homoserine from L-homoserine and acetyl-CoA; homoserine O-acetyltransferase complement(2402470..2403672) Pseudoalteromonas atlantica T6c 4172113 YP_661551.1 CDS Patl_1979 NC_008228.1 2403704 2404999 R PFAM: Gluconate transporter Citrate transporter TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pha:PSHAa2946 permease; citrate transporter complement(2403704..2404999) Pseudoalteromonas atlantica T6c 4172114 YP_661552.1 CDS Patl_1980 NC_008228.1 2405193 2407517 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2947 TonB-dependent receptor; TonB-dependent receptor 2405193..2407517 Pseudoalteromonas atlantica T6c 4172115 YP_661553.1 CDS Patl_1981 NC_008228.1 2407827 2408468 D PFAM: regulatory protein, LuxR response regulator receiver Bacterio-opsin activator, HTH Sigma-70, region 4 type 2; KEGG: ilo:IL2153 response regulator, LuxR family (CheY, HTH domains); two component LuxR family transcriptional regulator 2407827..2408468 Pseudoalteromonas atlantica T6c 4172116 YP_661554.1 CDS Patl_1982 NC_008228.1 2408544 2410403 R PFAM: sodium/hydrogen exchanger; KEGG: ilo:IL1058 Na+/H+ antiporter; sodium/hydrogen exchanger complement(2408544..2410403) Pseudoalteromonas atlantica T6c 4172117 YP_661555.1 CDS Patl_1983 NC_008228.1 2410879 2411313 D KEGG: sde:Sde_3410 hypothetical protein; hypothetical protein 2410879..2411313 Pseudoalteromonas atlantica T6c 4172118 YP_661556.1 CDS Patl_1984 NC_008228.1 2411329 2411631 R KEGG: cps:CPS_2742 ISCps7, transposase; ISCps7, transposase complement(2411329..2411631) Pseudoalteromonas atlantica T6c 4172119 YP_661557.1 CDS Patl_1985 NC_008228.1 2412004 2415420 R PFAM: Na+/solute symporter response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; SMART: PAS; KEGG: ilo:IL2152 multidomain protein, contains Na+/proline symporter PutP-like domain, sensory histidine kinase and receiver domain; multi-sensor hybrid histidine kinase complement(2412004..2415420) Pseudoalteromonas atlantica T6c 4172120 YP_661558.1 CDS Patl_1986 NC_008228.1 2415612 2416226 D PFAM: GrpE protein; KEGG: vpa:VP0651 GrpE; GrpE protein HSP-70 cofactor 2415612..2416226 Pseudoalteromonas atlantica T6c 4172121 YP_661559.1 CDS dnaK NC_008228.1 2416360 2418279 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 2416360..2418279 Pseudoalteromonas atlantica T6c 4172122 YP_661560.1 CDS Patl_1988 NC_008228.1 2418479 2419618 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 2418479..2419618 Pseudoalteromonas atlantica T6c 4172123 YP_661561.1 CDS Patl_1989 NC_008228.1 2419975 2420442 D PFAM: cytochrome c, class II; KEGG: cps:CPS_2799 cytochrome c'; cytochrome c, class II 2419975..2420442 Pseudoalteromonas atlantica T6c 4172124 YP_661562.1 CDS Patl_1990 NC_008228.1 2420721 2421185 D KEGG: pha:PSHAa1681 hypothetical protein; putative GAF sensor protein 2420721..2421185 Pseudoalteromonas atlantica T6c 4172125 YP_661563.1 CDS Patl_1991 NC_008228.1 2421182 2421469 D KEGG: cps:CPS_2812 hypothetical protein; hypothetical protein 2421182..2421469 Pseudoalteromonas atlantica T6c 4172126 YP_661564.1 CDS Patl_1992 NC_008228.1 2421492 2422142 D affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector 2421492..2422142 Pseudoalteromonas atlantica T6c 4172127 YP_661565.1 CDS Patl_1993 NC_008228.1 2422147 2424186 D Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 2422147..2424186 Pseudoalteromonas atlantica T6c 4172128 YP_661566.1 CDS Patl_1994 NC_008228.1 2424388 2425734 D PFAM: sodium:neurotransmitter symporter; KEGG: pha:PSHAa0859 sodium-dependent transporter; sodium:neurotransmitter symporter 2424388..2425734 Pseudoalteromonas atlantica T6c 4172129 YP_661567.1 CDS Patl_1995 NC_008228.1 2425734 2427254 D PFAM: Na+/H+ antiporter NhaC; KEGG: pha:PSHAa1677 Na+/H+ antiporter NnaC; Na+/H+ antiporter NhaC 2425734..2427254 Pseudoalteromonas atlantica T6c 4172130 YP_661568.1 CDS pepN NC_008228.1 2427354 2429978 D TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: eca:ECA2539 aminopeptidase N; aminopeptidase N 2427354..2429978 Pseudoalteromonas atlantica T6c 4172131 YP_661569.1 CDS Patl_1997 NC_008228.1 2429978 2430199 D KEGG: pae:PA3051 hypothetical protein; hypothetical protein 2429978..2430199 Pseudoalteromonas atlantica T6c 4172132 YP_661570.1 CDS Patl_1998 NC_008228.1 2430380 2432446 D PFAM: protein of unknown function DUF1302; KEGG: pha:PSHAa1674 hypothetical protein; hypothetical protein 2430380..2432446 Pseudoalteromonas atlantica T6c 4173872 YP_661571.1 CDS Patl_1999 NC_008228.1 2432457 2433824 D PFAM: protein of unknown function DUF1329; KEGG: pha:PSHAa1673 hypothetical protein; hypothetical protein 2432457..2433824 Pseudoalteromonas atlantica T6c 4173873 YP_661572.1 CDS Patl_2000 NC_008228.1 2433883 2434881 D KEGG: cps:CPS_2804 BNR repeat protein; BNR repeat-containing protein 2433883..2434881 Pseudoalteromonas atlantica T6c 4173874 YP_661573.1 CDS Patl_2001 NC_008228.1 2434888 2437203 D KEGG: cps:CPS_2803 putative membrane protein; hypothetical protein 2434888..2437203 Pseudoalteromonas atlantica T6c 4173875 YP_661574.1 CDS Patl_2002 NC_008228.1 2437488 2442326 D PFAM: NAD-glutamate dehydrogenase; KEGG: pha:PSHAa1670 glutamate dehydrogenase; NAD-glutamate dehydrogenase 2437488..2442326 Pseudoalteromonas atlantica T6c 4173876 YP_661575.1 CDS Patl_2003 NC_008228.1 2442397 2443404 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2442397..2443404 Pseudoalteromonas atlantica T6c 4173877 YP_661576.1 CDS Patl_2004 NC_008228.1 2443520 2444056 D PFAM: protein of unknown function DUF1379; KEGG: ppr:PBPRA1768 conserved hypothetical protein; hypothetical protein 2443520..2444056 Pseudoalteromonas atlantica T6c 4173878 YP_661577.1 CDS rlmL NC_008228.1 2444192 2446297 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 2444192..2446297 Pseudoalteromonas atlantica T6c 4173879 YP_661578.1 CDS Patl_2006 NC_008228.1 2446484 2448427 D PFAM: SMC protein-like ABC transporter related; SMART: ATPase; KEGG: ppr:PBPRA1771 putative ABC transporter, ATP-binding protein; ABC transporter-like protein 2446484..2448427 Pseudoalteromonas atlantica T6c 4173880 YP_661579.1 CDS Patl_2007 NC_008228.1 2448458 2450155 D KEGG: pha:PSHAa1664 hypothetical protein; hypothetical protein 2448458..2450155 Pseudoalteromonas atlantica T6c 4173881 YP_661580.1 CDS Patl_2008 NC_008228.1 2450420 2450593 D PFAM: ribosome modulation factor; KEGG: cps:CPS_4822 ribosome modulation factor; ribosome modulation factor 2450420..2450593 Pseudoalteromonas atlantica T6c 4173882 YP_661581.1 CDS Patl_2009 NC_008228.1 2450700 2451218 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase complement(2450700..2451218) Pseudoalteromonas atlantica T6c 4173883 YP_661582.1 CDS Patl_2010 NC_008228.1 2451353 2451622 D KEGG: cps:CPS_3273 hypothetical protein; hypothetical protein 2451353..2451622 Pseudoalteromonas atlantica T6c 4173884 YP_661583.1 CDS Patl_2011 NC_008228.1 2451920 2452396 R PFAM: SEC-C motif; KEGG: mca:MCA2786 sec-C motif domain protein; SecC motif-containing protein complement(2451920..2452396) Pseudoalteromonas atlantica T6c 4173885 YP_661584.1 CDS Patl_2012 NC_008228.1 2452605 2452988 R hypothetical protein complement(2452605..2452988) Pseudoalteromonas atlantica T6c 4173886 YP_661585.1 CDS Patl_2013 NC_008228.1 2453056 2453703 R PFAM: Ferric reductase-like transmembrane component-like; KEGG: cps:CPS_3632 hypothetical protein; ferric reductase-like transmembrane protein complement(2453056..2453703) Pseudoalteromonas atlantica T6c 4173887 YP_661586.1 CDS Patl_2014 NC_008228.1 2453703 2454701 R in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY complement(2453703..2454701) Pseudoalteromonas atlantica T6c 4173888 YP_661587.1 CDS Patl_2015 NC_008228.1 2454789 2456192 R dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(2454789..2456192) Pseudoalteromonas atlantica T6c 4173889 YP_661588.1 CDS Patl_2016 NC_008228.1 2456213 2457040 R KEGG: xac:XAC3992 hypothetical protein; hypothetical protein complement(2456213..2457040) Pseudoalteromonas atlantica T6c 4173890 YP_661589.1 CDS Patl_2017 NC_008228.1 2457170 2457604 R KEGG: eca:ECA3034 putative phosphohydrolase; putative phosphohydrolase complement(2457170..2457604) Pseudoalteromonas atlantica T6c 4173891 YP_661590.1 CDS Patl_2018 NC_008228.1 2457836 2458087 R PFAM: helix-turn-helix motif; KEGG: pha:PSHAa2249 DNA binding protein; XRE family transcriptional regulator complement(2457836..2458087) Pseudoalteromonas atlantica T6c 4173892 YP_661591.1 CDS Patl_2019 NC_008228.1 2458967 2459800 R SMART: Metal-dependent phosphohydrolase, HD region; KEGG: bur:Bcep18194_C6634 metal-dependent phosphohydrolase; metal dependent phosphohydrolase complement(2458967..2459800) Pseudoalteromonas atlantica T6c 4173893 YP_661592.1 CDS Patl_2020 NC_008228.1 2460187 2461440 R KEGG: ppu:PP1960 hypothetical protein; hypothetical protein complement(2460187..2461440) Pseudoalteromonas atlantica T6c 4173894 YP_661593.1 CDS Patl_2021 NC_008228.1 2461443 2462561 R KEGG: dre:558622 similar to restin; hypothetical protein complement(2461443..2462561) Pseudoalteromonas atlantica T6c 4173895 YP_661594.1 CDS Patl_2022 NC_008228.1 2462554 2464506 R PFAM: phage integrase; KEGG: ppu:PP1962 site-specific recombinase, phage integrase family; phage integrase complement(2462554..2464506) Pseudoalteromonas atlantica T6c 4173896 YP_661595.1 CDS Patl_2023 NC_008228.1 2464506 2466335 R KEGG: vvu:VV13176 hypothetical protein; hypothetical protein complement(2464506..2466335) Pseudoalteromonas atlantica T6c 4173897 YP_661596.1 CDS Patl_2024 NC_008228.1 2467200 2467589 R PFAM: regulatory protein, MerR; KEGG: sde:Sde_1961 putative transcriptional regulator, MerR family; MerR family transcriptional regulator complement(2467200..2467589) Pseudoalteromonas atlantica T6c 4173898 YP_661597.1 CDS Patl_2025 NC_008228.1 2467671 2468306 D PFAM: cation efflux protein; KEGG: tcx:Tcr_1855 cation efflux protein; cation efflux protein 2467671..2468306 Pseudoalteromonas atlantica T6c 4173899 YP_661598.1 CDS Patl_2026 NC_008228.1 2468303 2468662 D KEGG: hch:HCH_03108 hypothetical protein; hypothetical protein 2468303..2468662 Pseudoalteromonas atlantica T6c 4173900 YP_661599.1 CDS Patl_2027 NC_008228.1 2468655 2469539 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ilo:IL2587 cation efflux system component; cation diffusion facilitator family transporter 2468655..2469539 Pseudoalteromonas atlantica T6c 4173901 YP_661600.1 CDS Patl_2028 NC_008228.1 2469627 2470022 D KEGG: cps:CPS_2870 hypothetical protein; hypothetical protein 2469627..2470022 Pseudoalteromonas atlantica T6c 4173902 YP_661601.1 CDS Patl_2029 NC_008228.1 2470148 2471416 D PFAM: outer membrane efflux protein; KEGG: cps:CPS_1957 putative RND efflux system protein; outer membrane efflux protein 2470148..2471416 Pseudoalteromonas atlantica T6c 4173903 YP_661602.1 CDS Patl_2030 NC_008228.1 2471413 2472351 D PFAM: biotin/lipoyl attachment; KEGG: cps:CPS_1958 putative RND efflux system protein, MFP subunit; biotin/lipoyl attachment 2471413..2472351 Pseudoalteromonas atlantica T6c 4173904 YP_661603.1 CDS Patl_2031 NC_008228.1 2472405 2475518 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: cps:CPS_1959 putative RND efflux system protein; CzcA family heavy metal efflux protein 2472405..2475518 Pseudoalteromonas atlantica T6c 4173905 YP_661604.1 CDS Patl_2032 NC_008228.1 2476051 2476644 R KEGG: cps:CPS_3233 conserved hypothetical protein; hypothetical protein complement(2476051..2476644) Pseudoalteromonas atlantica T6c 4173906 YP_661605.1 CDS Patl_2033 NC_008228.1 2476647 2476973 R KEGG: sdy:SDY_2487 putative alpha helix protein; putative alpha helix protein complement(2476647..2476973) Pseudoalteromonas atlantica T6c 4173907 YP_661606.1 CDS Patl_2034 NC_008228.1 2476970 2478199 R broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT complement(2476970..2478199) Pseudoalteromonas atlantica T6c 4173908 YP_661607.1 CDS Patl_2035 NC_008228.1 2478525 2479319 D KEGG: vvy:VV2864 putative cytochrome c oxidase, subunit I; putative cytochrome c oxidase subunit I 2478525..2479319 Pseudoalteromonas atlantica T6c 4173909 YP_661608.1 CDS Patl_2036 NC_008228.1 2479780 2480976 D PFAM: dehydrogenase, E1 component; KEGG: ilo:IL1680 alpha keto acid dehydrogenase complex, E1 component, alpha subunit; 3-methyl-2-oxobutanoate dehydrogenase 2479780..2480976 Pseudoalteromonas atlantica T6c 4173910 YP_661609.1 CDS Patl_2037 NC_008228.1 2480969 2481946 D PFAM: Transketolase, central region Transketolase-like; KEGG: cps:CPS_1583 2-oxoisovalerate dehydrogenase complex, E1 component, beta subunit; transketolase, central region 2480969..2481946 Pseudoalteromonas atlantica T6c 4173911 YP_661610.1 CDS Patl_2038 NC_008228.1 2481970 2483637 D PFAM: biotin/lipoyl attachment catalytic domain of components of various dehydrogenase complexes E3 binding; KEGG: pha:PSHAa1630 lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (Dihydrolipoyllysine-residue(2-methylpropanoyl)transferase E2) (dihydrolipoamide branched chain transacylase) (BCKAD E2 subunit); dihydrolipoamide acetyltransferase 2481970..2483637 Pseudoalteromonas atlantica T6c 4173912 YP_661611.1 CDS Patl_2039 NC_008228.1 2483805 2484686 D PFAM: protein of unknown function DUF519; KEGG: vvy:VV0066 hypothetical protein; hypothetical protein 2483805..2484686 Pseudoalteromonas atlantica T6c 4173913 YP_661612.1 CDS Patl_2040 NC_008228.1 2484711 2486561 D PFAM: protein kinase; SMART: Serine/threonine protein kinase; KEGG: hch:HCH_03684 serine/threonine protein kinase; serine/threonine protein kinase 2484711..2486561 Pseudoalteromonas atlantica T6c 4173914 YP_661613.1 CDS Patl_2041 NC_008228.1 2486604 2487458 D PFAM: acyl-CoA thioesterase; KEGG: pha:PSHAa0141 acyl-CoA thioesterase II; palmitoyl-CoA hydrolase 2486604..2487458 Pseudoalteromonas atlantica T6c 4173915 YP_661614.1 CDS Patl_2042 NC_008228.1 2487473 2488000 D KEGG: psb:Psyr_1274 transferase hexapeptide repeat; hexapaptide repeat-containing transferase 2487473..2488000 Pseudoalteromonas atlantica T6c 4173916 YP_661615.1 CDS Patl_2043 NC_008228.1 2488370 2489497 D PFAM: aminotransferase, class V; KEGG: son:SO4343 aminotransferase, class V; serine--pyruvate transaminase 2488370..2489497 Pseudoalteromonas atlantica T6c 4173917 YP_661616.1 CDS Patl_2044 NC_008228.1 2489583 2490419 R hypothetical protein complement(2489583..2490419) Pseudoalteromonas atlantica T6c 4173918 YP_661617.1 CDS Patl_2045 NC_008228.1 2490785 2491207 D PFAM: regulatory protein, MarR; KEGG: bfs:BF3633 putative MarR-family regulatory protein; MarR family transcriptional regulator 2490785..2491207 Pseudoalteromonas atlantica T6c 4173919 YP_661618.1 CDS Patl_2046 NC_008228.1 2491280 2492755 D PFAM: ABC transporter related; SMART: ATPase; KEGG: pha:PSHAa2778 anion transport protein (ABC superfamily, ATP-binding protein); ABC transporter-like protein 2491280..2492755 Pseudoalteromonas atlantica T6c 4173920 YP_661619.1 CDS Patl_2047 NC_008228.1 2492934 2493488 D PFAM: GCN5-related N-acetyltransferase; KEGG: xac:XAC1227 hypothetical protein; N-acetyltransferase GCN5 2492934..2493488 Pseudoalteromonas atlantica T6c 4173921 YP_661620.1 CDS Patl_2048 NC_008228.1 2493650 2494570 D catalyzes the formation of glutamate from glutamine; glutaminase 2493650..2494570 Pseudoalteromonas atlantica T6c 4173922 YP_661621.1 CDS Patl_2049 NC_008228.1 2494675 2495292 D KEGG: pfl:PFL_4807 hypothetical protein; hypothetical protein 2494675..2495292 Pseudoalteromonas atlantica T6c 4173923 YP_661622.1 CDS Patl_2050 NC_008228.1 2495329 2495640 D KEGG: DSBH domain containing protein; DSBH domain-containing protein 2495329..2495640 Pseudoalteromonas atlantica T6c 4173924 YP_661623.1 CDS Patl_2051 NC_008228.1 2495696 2496922 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(2495696..2496922) Pseudoalteromonas atlantica T6c 4173925 YP_661624.1 CDS Patl_2052 NC_008228.1 2496922 2498142 R PFAM: aminotransferase, class V; KEGG: eca:ECA3491 purine catabolism protein; class V aminotransferase complement(2496922..2498142) Pseudoalteromonas atlantica T6c 4173926 YP_661625.1 CDS Patl_2053 NC_008228.1 2498206 2499030 R PFAM: protein of unknown function DUF81; KEGG: pha:PSHAa1469 hypothetical protein; hypothetical protein complement(2498206..2499030) Pseudoalteromonas atlantica T6c 4173927 YP_661626.1 CDS Patl_2054 NC_008228.1 2499089 2500675 R PFAM: gamma-glutamyltranspeptidase; KEGG: vch:VCA0558 gamma-glutamyltranspeptidase, putative; gamma-glutamyltransferase complement(2499089..2500675) Pseudoalteromonas atlantica T6c 4173928 YP_661627.1 CDS Patl_2055 NC_008228.1 2500678 2501895 R PFAM: Amidase; KEGG: rpb:RPB_2085 amidase; amidase complement(2500678..2501895) Pseudoalteromonas atlantica T6c 4173929 YP_661628.1 CDS fumC NC_008228.1 2502246 2503655 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(2502246..2503655) Pseudoalteromonas atlantica T6c 4173735 YP_661629.1 CDS Patl_2057 NC_008228.1 2503799 2504617 R PFAM: helix-turn-helix protein RpiR sugar isomerase (SIS); KEGG: eca:ECA3496 putative transcriptional regulator; RpiR family transcriptional regulator complement(2503799..2504617) Pseudoalteromonas atlantica T6c 4173736 YP_661630.1 CDS Patl_2058 NC_008228.1 2504938 2505666 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 2504938..2505666 Pseudoalteromonas atlantica T6c 4173737 YP_661631.1 CDS Patl_2059 NC_008228.1 2505657 2506292 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: psb:Psyr_0989 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 2505657..2506292 Pseudoalteromonas atlantica T6c 4173738 YP_661632.1 CDS Patl_2060 NC_008228.1 2506396 2507139 D KEGG: vvu:VV12605 hypothetical protein; hypothetical protein 2506396..2507139 Pseudoalteromonas atlantica T6c 4173739 YP_661633.1 CDS Patl_2061 NC_008228.1 2507132 2507992 D PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; KEGG: son:SO2352 bax protein, putative; mannosyl-glycoprotein endo-beta-N-acetylglucosamidase 2507132..2507992 Pseudoalteromonas atlantica T6c 4173740 YP_661634.1 CDS Patl_2062 NC_008228.1 2507989 2508660 D KEGG: son:SO2353 hypothetical protein; hypothetical protein 2507989..2508660 Pseudoalteromonas atlantica T6c 4173741 YP_661635.1 CDS Patl_2063 NC_008228.1 2508880 2509863 R PFAM: Patatin; KEGG: ilo:IL0740 alpha-beta superfamily hydrolase; patatin complement(2508880..2509863) Pseudoalteromonas atlantica T6c 4173742 YP_661636.1 CDS Patl_2064 NC_008228.1 2509874 2510830 R PFAM: PP-loop; KEGG: vch:VC1432 hypothetical protein; PP-loop superfamily ATPase complement(2509874..2510830) Pseudoalteromonas atlantica T6c 4173743 YP_661637.1 CDS Patl_2065 NC_008228.1 2511184 2512119 R with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE complement(2511184..2512119) Pseudoalteromonas atlantica T6c 4173744 YP_661638.1 CDS Patl_2066 NC_008228.1 2512282 2512944 R KEGG: vfi:VF1307 integral membrane protein; integral membrane protein complement(2512282..2512944) Pseudoalteromonas atlantica T6c 4173745 YP_661639.1 CDS Patl_2067 NC_008228.1 2512931 2513179 R TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: cps:CPS_1989 cytochrome oxidase maturation protein, cbb3-type; cbb3-type cytochrome oxidase maturation protein complement(2512931..2513179) Pseudoalteromonas atlantica T6c 4173746 YP_661640.1 CDS Patl_2068 NC_008228.1 2513197 2515572 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC copper-translocating P-type ATPase heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase-like hydrolase Heavy metal transport/detoxification protein E1-E2 ATPase-associated region; KEGG: vch:VC1437 cation transport ATPase, E1-E2 family; heavy metal translocating P-type ATPase complement(2513197..2515572) Pseudoalteromonas atlantica T6c 4173747 YP_661641.1 CDS Patl_2069 NC_008228.1 2515572 2516081 R KEGG: son:SO2360 hypothetical protein; hypothetical protein complement(2515572..2516081) Pseudoalteromonas atlantica T6c 4173748 YP_661642.1 CDS Patl_2070 NC_008228.1 2516153 2517106 R TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: ilo:IL1300 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III complement(2516153..2517106) Pseudoalteromonas atlantica T6c 4173749 YP_661643.1 CDS Patl_2071 NC_008228.1 2517099 2517272 R PFAM: Cbb3-type cytochrome oxidase component; KEGG: vvy:VV1673 Cbb3-type cytochrome oxidase, subunit 3; cbb3-type cytochrome oxidase subunit complement(2517099..2517272) Pseudoalteromonas atlantica T6c 4173750 YP_661644.1 CDS Patl_2072 NC_008228.1 2517274 2517879 R CcoO; FixO; cbb3-type cytochrome c oxidase subunit II complement(2517274..2517879) Pseudoalteromonas atlantica T6c 4173751 YP_661645.1 CDS Patl_2073 NC_008228.1 2517891 2519330 R CcoN; FixN; cbb3-type cytochrome c oxidase subunit I complement(2517891..2519330) Pseudoalteromonas atlantica T6c 4173752 YP_661646.1 CDS Patl_2074 NC_008228.1 2519579 2520031 D hypothetical protein 2519579..2520031 Pseudoalteromonas atlantica T6c 4173753 YP_661647.1 CDS Patl_2075 NC_008228.1 2520199 2520666 R TIGRFAM: bacterioferritin; PFAM: Ferritin and Dps; KEGG: son:SO1112 bacterioferritin subunit 1; bacterioferritin complement(2520199..2520666) Pseudoalteromonas atlantica T6c 4173754 YP_661648.1 CDS Patl_2076 NC_008228.1 2520666 2521145 R TIGRFAM: bacterioferritin; PFAM: Ferritin and Dps; KEGG: son:SO1111 bacterioferritin subunit 2; bacterioferritin complement(2520666..2521145) Pseudoalteromonas atlantica T6c 4173755 YP_661649.1 CDS Patl_2077 NC_008228.1 2521619 2521852 D hypothetical protein 2521619..2521852 Pseudoalteromonas atlantica T6c 4173756 YP_661650.1 CDS Patl_2078 NC_008228.1 2521849 2522679 D PFAM: Conserved TM helix; KEGG: pfl:PFL_1874 CmpX protein; hypothetical protein 2521849..2522679 Pseudoalteromonas atlantica T6c 4173757 YP_661651.1 CDS Patl_2079 NC_008228.1 2522703 2523233 D PFAM: sigma-70 region 2 Sigma-70, region 4 type 2; KEGG: psb:Psyr_2096 sigma-70 region 2; ECF subfamily RNA polymerase sigma-24 factor 2522703..2523233 Pseudoalteromonas atlantica T6c 4173758 YP_661652.1 CDS Patl_2080 NC_008228.1 2523825 2524925 D PFAM: Thrombospondin type 3 repeat OmpA/MotB OmpF; KEGG: cps:CPS_0958 OmpA family protein; OmpA/MotB protein 2523825..2524925 Pseudoalteromonas atlantica T6c 4173759 YP_661653.1 CDS Patl_2081 NC_008228.1 2525209 2526099 D PFAM: phospholipase A1; KEGG: ppr:PBPRA1301 putative outer membrane phospholipase A precursor; phospholipase A1 2525209..2526099 Pseudoalteromonas atlantica T6c 4173760 YP_661654.1 CDS Patl_2082 NC_008228.1 2526184 2528328 R PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: dar:Daro_4142 PAS; histidine kinase complement(2526184..2528328) Pseudoalteromonas atlantica T6c 4173761 YP_661655.1 CDS Patl_2083 NC_008228.1 2528450 2528965 R hypothetical protein complement(2528450..2528965) Pseudoalteromonas atlantica T6c 4173762 YP_661656.1 CDS Patl_2084 NC_008228.1 2529319 2530638 D TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; KEGG: son:SO1498 glucose-1-phosphate adenylyltransferase; glucose-1-phosphate adenylyltransferase 2529319..2530638 Pseudoalteromonas atlantica T6c 4173763 YP_661657.1 CDS Patl_2085 NC_008228.1 2530846 2531640 D PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: pmu:PM0668 fumarate (and nitrate) reduction regulatory protein; Crp/FNR family transcriptional regulator 2530846..2531640 Pseudoalteromonas atlantica T6c 4173764 YP_661658.1 CDS Patl_2086 NC_008228.1 2531701 2532066 D PFAM: Rhodanese-like; KEGG: cps:CPS_1238 hypothetical protein; rhodanese-like protein 2531701..2532066 Pseudoalteromonas atlantica T6c 4173765 YP_661659.1 CDS Patl_2087 NC_008228.1 2532086 2533204 R PFAM: phosphofructokinase; KEGG: sru:SRU_2111 phosphofructokinase subfamily; 6-phosphofructokinase complement(2532086..2533204) Pseudoalteromonas atlantica T6c 4173766 YP_661660.1 CDS Patl_2088 NC_008228.1 2533182 2534180 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: ana:alr0058 D-lactate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase complement(2533182..2534180) Pseudoalteromonas atlantica T6c 4173767 YP_661661.1 CDS Patl_2089 NC_008228.1 2534536 2535456 D TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein response regulator receiver; KEGG: cvi:CV3504 probable two-component response regulator; diguanylate cyclase 2534536..2535456 Pseudoalteromonas atlantica T6c 4173768 YP_661662.1 CDS Patl_2090 NC_008228.1 2535679 2536110 D PFAM: regulatory protein, MerR; KEGG: pha:PSHAa1010 transcriptional regulator; MerR family transcriptional regulator 2535679..2536110 Pseudoalteromonas atlantica T6c 4173769 YP_661663.1 CDS Patl_2091 NC_008228.1 2536100 2538352 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC copper-translocating P-type ATPase heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase-like hydrolase Heavy metal transport/detoxification protein E1-E2 ATPase-associated region; KEGG: pha:PSHAa1011 P-type ATPase, copper transporting, phophatase-like domain; copper-translocating P-type ATPase 2536100..2538352 Pseudoalteromonas atlantica T6c 4173770 YP_661664.1 CDS Patl_2092 NC_008228.1 2538388 2538741 D KEGG: pha:PSHAa1012 hypothetical protein; hypothetical protein 2538388..2538741 Pseudoalteromonas atlantica T6c 4173771 YP_661665.1 CDS Patl_2093 NC_008228.1 2539333 2539578 D hypothetical protein 2539333..2539578 Pseudoalteromonas atlantica T6c 4173772 YP_661666.1 CDS Patl_2094 NC_008228.1 2539618 2540040 D PFAM: UspA; KEGG: hch:HCH_04760 universal stress protein UspA and related nucleotide-binding protein; hypothetical protein 2539618..2540040 Pseudoalteromonas atlantica T6c 4173773 YP_661667.1 CDS Patl_2095 NC_008228.1 2540220 2540627 R PFAM: response regulator receiver; KEGG: nar:Saro_1578 two component transcriptional regulator, LuxR family; response regulator receiver protein complement(2540220..2540627) Pseudoalteromonas atlantica T6c 4173774 YP_661668.1 CDS Patl_2096 NC_008228.1 2540765 2541403 R PFAM: regulatory protein, LuxR response regulator receiver; KEGG: hch:HCH_05220 response regulator; two component LuxR family transcriptional regulator complement(2540765..2541403) Pseudoalteromonas atlantica T6c 4173775 YP_661669.1 CDS Patl_2097 NC_008228.1 2541393 2542589 R KEGG: mlo:mll6607 two-component, nitrogen fixation sensor protein FixL; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS; PAS/PAC sensor signal transduction histidine kinase complement(2541393..2542589) Pseudoalteromonas atlantica T6c 4173776 YP_661670.1 CDS Patl_2098 NC_008228.1 2542792 2543649 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ava:Ava_1002 cation efflux protein; cation diffusion facilitator family transporter 2542792..2543649 Pseudoalteromonas atlantica T6c 4173777 YP_661671.1 CDS Patl_2099 NC_008228.1 2543683 2543988 R KEGG: pha:PSHAa2877 hypothetical protein; hypothetical protein complement(2543683..2543988) Pseudoalteromonas atlantica T6c 4173778 YP_661672.1 CDS Patl_2100 NC_008228.1 2543993 2544955 R PFAM: heat shock protein DnaJ-like chaperone DnaJ-like; KEGG: ppu:PP4848 curved-DNA-binding protein, DnaJ family; heat shock protein DnaJ-like protein complement(2543993..2544955) Pseudoalteromonas atlantica T6c 4173779 YP_661673.1 CDS Patl_2101 NC_008228.1 2545112 2545576 R KEGG: cps:CPS_2621 cytochrome c family protein; cytochrome c family protein complement(2545112..2545576) Pseudoalteromonas atlantica T6c 4173780 YP_661674.1 CDS Patl_2102 NC_008228.1 2545959 2546543 D PFAM: GCN5-related N-acetyltransferase; KEGG: pfl:PFL_2643 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2545959..2546543 Pseudoalteromonas atlantica T6c 4173781 YP_661675.1 CDS Patl_2103 NC_008228.1 2546805 2547686 R KEGG: son:SO2355 universal stress protein family; hypothetical protein complement(2546805..2547686) Pseudoalteromonas atlantica T6c 4173782 YP_661676.1 CDS Patl_2104 NC_008228.1 2548103 2551231 D KEGG: pha:PSHAa1624 sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4 PAS fold; SMART: PAS; multi-sensor hybrid histidine kinase 2548103..2551231 Pseudoalteromonas atlantica T6c 4173783 YP_661677.1 CDS Patl_2105 NC_008228.1 2551326 2551628 R PFAM: regulatory protein, ArsR; KEGG: mag:amb2905 predicted transcriptional regulator; ArsR family transcriptional regulator complement(2551326..2551628) Pseudoalteromonas atlantica T6c 4173784 YP_661678.1 CDS Patl_2106 NC_008228.1 2551634 2552107 R PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: vpa:VPA0945 hypothetical protein; hypothetical protein complement(2551634..2552107) Pseudoalteromonas atlantica T6c 4173785 YP_661679.1 CDS Patl_2107 NC_008228.1 2552107 2552586 R PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: ppr:PBPRA1422 conserved hypothetical protein; hypothetical protein complement(2552107..2552586) Pseudoalteromonas atlantica T6c 4173786 YP_661680.1 CDS Patl_2108 NC_008228.1 2553550 2553825 D KEGG: aci:ACIAD2972 hypothetical protein; hypothetical protein 2553550..2553825 Pseudoalteromonas atlantica T6c 4173787 YP_661681.1 CDS Patl_2109 NC_008228.1 2553834 2554649 R PFAM: Redoxin; KEGG: tbd:Tbd_2789 probable thiol:disulfide interchange protein; redoxin complement(2553834..2554649) Pseudoalteromonas atlantica T6c 4173788 YP_661682.1 CDS Patl_2110 NC_008228.1 2555257 2556726 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(2555257..2556726) Pseudoalteromonas atlantica T6c 4173789 YP_661683.1 CDS Patl_2111 NC_008228.1 2557218 2558453 D PFAM: phage integrase; KEGG: son:SO2370 site-specific recombinase, phage integrase family; phage integrase 2557218..2558453 Pseudoalteromonas atlantica T6c 4173790 YP_661684.1 CDS Patl_2112 NC_008228.1 2558550 2560994 R PFAM: Pyrrolo-quinoline quinone; KEGG: xcb:XC_2659 glucose dehydrogenase; Pyrrolo-quinoline quinone complement(2558550..2560994) Pseudoalteromonas atlantica T6c 4173791 YP_661685.1 CDS Patl_2113 NC_008228.1 2561287 2563059 R PFAM: glycoside hydrolase, family 13-like alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: rba:RB548 1,4-alpha-glucan branching enzyme; alpha amylase complement(2561287..2563059) Pseudoalteromonas atlantica T6c 4173792 YP_661686.1 CDS Patl_2114 NC_008228.1 2563473 2563985 D KEGG: hch:HCH_03360 hypothetical protein; hypothetical protein 2563473..2563985 Pseudoalteromonas atlantica T6c 4173793 YP_661687.1 CDS Patl_2115 NC_008228.1 2564158 2564931 R TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: pha:PSHAa1800 putative metallo-dependent hydrolase; TatD family hydrolase complement(2564158..2564931) Pseudoalteromonas atlantica T6c 4173370 YP_661688.1 CDS Patl_2116 NC_008228.1 2564994 2565896 R KEGG: mca:MCA1995 DNA polymerase III, delta prime subunit; DNA-directed DNA polymerase complement(2564994..2565896) Pseudoalteromonas atlantica T6c 4173371 YP_661689.1 CDS Patl_2117 NC_008228.1 2565898 2566527 R PFAM: thymidylate kinase; KEGG: vch:VC2016 dTMP kinase; thymidylate kinase complement(2565898..2566527) Pseudoalteromonas atlantica T6c 4173372 YP_661690.1 CDS Patl_2118 NC_008228.1 2566595 2567533 R PFAM: aminodeoxychorismate lyase; KEGG: vch:VC2017 hypothetical protein; aminodeoxychorismate lyase complement(2566595..2567533) Pseudoalteromonas atlantica T6c 4173373 YP_661691.1 CDS Patl_2119 NC_008228.1 2567618 2568433 R PFAM: aminotransferase, class IV; KEGG: yps:YPTB2468 4-amino-4-deoxychorismate lyase; class IV aminotransferase complement(2567618..2568433) Pseudoalteromonas atlantica T6c 4173374 YP_661692.1 CDS Patl_2120 NC_008228.1 2568566 2569804 R PFAM: beta-ketoacyl synthase; KEGG: ecj:JW1081 3-oxoacyl-[acyl-carrier-protein] synthase II; beta-ketoacyl synthase complement(2568566..2569804) Pseudoalteromonas atlantica T6c 4173375 YP_661693.1 CDS acpP NC_008228.1 2569883 2570122 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(2569883..2570122) Pseudoalteromonas atlantica T6c 4173376 YP_661694.1 CDS Patl_2122 NC_008228.1 2570306 2571043 R TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR Male sterility-like; KEGG: vpa:VP2054 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase complement(2570306..2571043) Pseudoalteromonas atlantica T6c 4173377 YP_661695.1 CDS Patl_2123 NC_008228.1 2571058 2571987 R TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase region; KEGG: msu:MS1873 (acyl-carrier-protein) S-malonyltransferase; malonyl CoA-acyl carrier protein transacylase complement(2571058..2571987) Pseudoalteromonas atlantica T6c 4173378 YP_661696.1 CDS Patl_2124 NC_008228.1 2572049 2573008 R KEGG: vvy:VV1273 3-oxoacyl-(acyl-carrier-protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-(acyl-carrier-protein) synthase III complement(2572049..2573008) Pseudoalteromonas atlantica T6c 4173379 YP_661697.1 CDS Patl_2125 NC_008228.1 2573012 2574037 R TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: cps:CPS_2295 fatty acid/phospholipid synthesis protein PlsX; fatty acid/phospholipid synthesis protein PlsX complement(2573012..2574037) Pseudoalteromonas atlantica T6c 4173380 YP_661698.1 CDS Patl_2126 NC_008228.1 2574050 2574220 R TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: vpa:VP2058 ribosomal protein L32; 50S ribosomal protein L32 complement(2574050..2574220) Pseudoalteromonas atlantica T6c 4173381 YP_661699.1 CDS Patl_2127 NC_008228.1 2574231 2574758 R PFAM: protein of unknown function DUF177; KEGG: sdy:SDY_2062 hypothetical protein; hypothetical protein complement(2574231..2574758) Pseudoalteromonas atlantica T6c 4173382 YP_661700.1 CDS Patl_2128 NC_008228.1 2574882 2575466 D TIGRFAM: maf protein; PFAM: Maf-like protein; KEGG: eca:ECA1791 Maf-like protein; maf protein 2574882..2575466 Pseudoalteromonas atlantica T6c 4173383 YP_661701.1 CDS Patl_2129 NC_008228.1 2575532 2576392 R PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase; KEGG: syf:Synpcc7942_2099 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(2575532..2576392) Pseudoalteromonas atlantica T6c 4173384 YP_661702.1 CDS Patl_2130 NC_008228.1 2576439 2576987 R KEGG: vvy:VV0303 dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase complement(2576439..2576987) Pseudoalteromonas atlantica T6c 4173385 YP_661703.1 CDS Patl_2131 NC_008228.1 2577015 2577908 R TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: par:Psyc_1214 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase complement(2577015..2577908) Pseudoalteromonas atlantica T6c 4173386 YP_661704.1 CDS Patl_2132 NC_008228.1 2577911 2579002 R TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: vpa:VP0222 dTDP-D-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase complement(2577911..2579002) Pseudoalteromonas atlantica T6c 4173387 YP_661705.1 CDS Patl_2133 NC_008228.1 2579054 2580010 R KEGG: hdu:HD0645 ribosomal large subunit pseudouridine synthase C; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 pseudouridine synthase; RluA family pseudouridine synthase complement(2579054..2580010) Pseudoalteromonas atlantica T6c 4173388 YP_661706.1 CDS Patl_2134 NC_008228.1 2580531 2583743 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1; KEGG: pha:PSHAa1816 RNase E: endoribonuclease for rRNA processing and mRNA degradation; member of the degradosome; involved in the production of deoxyribonucleotides via the formation of NDPs; ribonuclease 2580531..2583743 Pseudoalteromonas atlantica T6c 4173389 YP_661707.1 CDS Patl_2135 NC_008228.1 2583926 2585233 D PFAM: helicase-like DEAD/DEAH box helicase-like; KEGG: ppr:PBPRB1232 putative ATP-dependent RNA helicase RhlE; DEAD/DEAH box helicase 2583926..2585233 Pseudoalteromonas atlantica T6c 4173390 YP_661708.1 CDS Patl_2136 NC_008228.1 2585365 2587956 D KEGG: pha:PSHAa2329 hypothetical protein ; signal peptide; hypothetical protein 2585365..2587956 Pseudoalteromonas atlantica T6c 4173391 YP_661709.1 CDS Patl_2137 NC_008228.1 2587959 2588132 D KEGG: pha:PSHAa2328 hypothetical protein; hypothetical protein 2587959..2588132 Pseudoalteromonas atlantica T6c 4173392 YP_661710.1 CDS Patl_2138 NC_008228.1 2588142 2588471 D PFAM: Uncharacterised conserved protein UCP025560; KEGG: pha:PSHAa2327 hypothetical protein; hypothetical protein 2588142..2588471 Pseudoalteromonas atlantica T6c 4173393 YP_661711.1 CDS Patl_2139 NC_008228.1 2588568 2589332 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pfo:Pfl_3419 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase complement(2588568..2589332) Pseudoalteromonas atlantica T6c 4173394 YP_661712.1 CDS Patl_2140 NC_008228.1 2589360 2590124 R PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: hch:HCH_06815 short-chain alcohol dehydrogenase-like protein; short-chain dehydrogenase/reductase SDR complement(2589360..2590124) Pseudoalteromonas atlantica T6c 4173395 YP_661713.1 CDS Patl_2141 NC_008228.1 2590282 2592132 R PFAM: acyl-CoA dehydrogenase-like; KEGG: psp:PSPPH_0495 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase-like protein complement(2590282..2592132) Pseudoalteromonas atlantica T6c 4173396 YP_661714.1 CDS Patl_2142 NC_008228.1 2592313 2593287 D PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: hch:HCH_00884 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; AraC family transcriptional regulator 2592313..2593287 Pseudoalteromonas atlantica T6c 4173397 YP_661715.1 CDS Patl_2143 NC_008228.1 2593868 2594176 D PFAM: glycoside hydrolase, family 13-like; KEGG: dde:Dde_2682 isoamylase protein-like; glycoside hydrolase 2593868..2594176 Pseudoalteromonas atlantica T6c 4173398 YP_661716.1 CDS Patl_2144 NC_008228.1 2594233 2596191 R PFAM: Glycoside hydrolase, family 42-like Beta-galactosidase trimerisation; KEGG: tma:TM1195 beta-galactosidase; beta-galactosidase complement(2594233..2596191) Pseudoalteromonas atlantica T6c 4173399 YP_661717.1 CDS Patl_2145 NC_008228.1 2596540 2597466 R PFAM: electron transfer flavoprotein beta-subunit electron transfer flavoprotein, alpha subunit; KEGG: cps:CPS_3688 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha complement(2596540..2597466) Pseudoalteromonas atlantica T6c 4173400 YP_661718.1 CDS Patl_2146 NC_008228.1 2597466 2598281 R PFAM: electron transfer flavoprotein beta-subunit; KEGG: cps:CPS_3687 electron transfer flavoprotein, beta subunit; electron transfer flavoprotein subunit beta complement(2597466..2598281) Pseudoalteromonas atlantica T6c 4173401 YP_661719.1 CDS Patl_2147 NC_008228.1 2598644 2600293 D PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: cps:CPS_3686 electron transfer flavoprotein-ubiquinone oxidoreductase; electron-transferring-flavoprotein dehydrogenase 2598644..2600293 Pseudoalteromonas atlantica T6c 4173402 YP_661720.1 CDS Patl_2148 NC_008228.1 2600475 2600876 D PFAM: histone-like nucleoid-structuring protein H-NS; KEGG: son:SO3146 DNA-binding protein, H-NS family; histone-like nucleoid-structuring protein H-NS 2600475..2600876 Pseudoalteromonas atlantica T6c 4173403 YP_661721.1 CDS Patl_2149 NC_008228.1 2601063 2601746 D PFAM: alpha/beta hydrolase fold; KEGG: pha:PSHAa1636 hydrolase; alpha/beta hydrolase fold protein 2601063..2601746 Pseudoalteromonas atlantica T6c 4173404 YP_661722.1 CDS Patl_2150 NC_008228.1 2601808 2602020 D KEGG: son:SO2332 hypothetical protein; hypothetical protein 2601808..2602020 Pseudoalteromonas atlantica T6c 4173405 YP_661723.1 CDS Patl_2151 NC_008228.1 2602075 2602599 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 2602075..2602599 Pseudoalteromonas atlantica T6c 4173406 YP_661724.1 CDS fur NC_008228.1 2602822 2603244 D negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 2602822..2603244 Pseudoalteromonas atlantica T6c 4173407 YP_661725.1 CDS Patl_2153 NC_008228.1 2603549 2604241 R TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS1804 molybdenum transport system permease; molybdate ABC transporter inner membrane subunit complement(2603549..2604241) Pseudoalteromonas atlantica T6c 4173408 YP_661726.1 CDS Patl_2154 NC_008228.1 2604231 2605025 R TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: rpa:RPA4717 molybdate transport system substrate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein complement(2604231..2605025) Pseudoalteromonas atlantica T6c 4173409 YP_661727.1 CDS Patl_2155 NC_008228.1 2605018 2605482 R PFAM: molybdopterin biosynthesis MoaE; KEGG: son:SO4449 molybdenum cofactor biosynthesis protein E; molybdopterin biosynthesis MoaE complement(2605018..2605482) Pseudoalteromonas atlantica T6c 4173410 YP_661728.1 CDS Patl_2156 NC_008228.1 2605486 2605731 R PFAM: thiamineS; KEGG: ssn:SSO_0763 molybdopterin biosynthesis; sulfur transfer protein ThiS complement(2605486..2605731) Pseudoalteromonas atlantica T6c 4173411 YP_661729.1 CDS Patl_2157 NC_008228.1 2605728 2606228 R TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: cps:CPS_4636 molybdenum cofactor biosynthesis protein C; molybdenum cofactor biosynthesis protein C complement(2605728..2606228) Pseudoalteromonas atlantica T6c 4173412 YP_661730.1 CDS Patl_2158 NC_008228.1 2606232 2606777 R TIGRFAM: molybdenum cofactor synthesis domain molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: vvy:VV1199 molybdenum cofactor biosynthesis protein B; molybdenum cofactor biosynthesis protein B complement(2606232..2606777) Pseudoalteromonas atlantica T6c 4173413 YP_661731.1 CDS Patl_2159 NC_008228.1 2606892 2607584 R KEGG: cps:CPS_4634 putative molybdopterin biosynthesis gene; putative molybdopterin biosynthesis gene complement(2606892..2607584) Pseudoalteromonas atlantica T6c 4173414 YP_661732.1 CDS moaA NC_008228.1 2607601 2608569 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(2607601..2608569) Pseudoalteromonas atlantica T6c 4173415 YP_661733.1 CDS Patl_2161 NC_008228.1 2609119 2610009 D KEGG: cps:CPS_0521 hypothetical protein; hypothetical protein 2609119..2610009 Pseudoalteromonas atlantica T6c 4173416 YP_661734.1 CDS Patl_2162 NC_008228.1 2610002 2610826 D catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 2610002..2610826 Pseudoalteromonas atlantica T6c 4173417 YP_661735.1 CDS Patl_2163 NC_008228.1 2610888 2612117 D KEGG: hch:HCH_00270 glycosyltransferase involved in cell wall biogenesis; cell wall biosynthesis glycosyltransferase 2610888..2612117 Pseudoalteromonas atlantica T6c 4173418 YP_661736.1 CDS Patl_2164 NC_008228.1 2612143 2613903 D PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: cps:CPS_0506 putative sucrose phosphorylase; alpha amylase 2612143..2613903 Pseudoalteromonas atlantica T6c 4173419 YP_661737.1 CDS Patl_2165 NC_008228.1 2614339 2614545 D hypothetical protein 2614339..2614545 Pseudoalteromonas atlantica T6c 4173420 YP_661738.1 CDS Patl_2166 NC_008228.1 2614657 2614875 D PFAM: Calcium-binding EF-hand; KEGG: pha:PSHAa0019 calmodulin; calcium-binding EF-hand 2614657..2614875 Pseudoalteromonas atlantica T6c 4173421 YP_661739.1 CDS Patl_2167 NC_008228.1 2615075 2616058 R PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: cps:CPS_3289 oxidoreductase, zinc-binding; zinc-binding alcohol dehydrogenase complement(2615075..2616058) Pseudoalteromonas atlantica T6c 4173422 YP_661740.1 CDS Patl_2168 NC_008228.1 2616159 2617346 D SMART: PUA; KEGG: son:SO1149 hypothetical SAM-dependent methyltransferase; PUA domain-containing protein 2616159..2617346 Pseudoalteromonas atlantica T6c 4173423 YP_661741.1 CDS Patl_2169 NC_008228.1 2617479 2617781 R PFAM: type IV pilus assembly PilZ; KEGG: cps:CPS_2244 hypothetical protein; type IV pilus assembly PilZ complement(2617479..2617781) Pseudoalteromonas atlantica T6c 4173424 YP_661742.1 CDS Patl_2170 NC_008228.1 2617897 2621745 R KEGG: pha:PSHAa1144 helicase, ATP-dependent; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-like helicase-associated region protein of unknown function DUF1605; SMART: ATPase DEAD/DEAH box helicase-like; ATP-dependent helicase HrpA complement(2617897..2621745) Pseudoalteromonas atlantica T6c 4173425 YP_661743.1 CDS Patl_2171 NC_008228.1 2621919 2622338 R PFAM: CBS domain containing protein; KEGG: cps:CPS_2242 CBS domain protein; hypothetical protein complement(2621919..2622338) Pseudoalteromonas atlantica T6c 4173426 YP_661744.1 CDS Patl_2172 NC_008228.1 2622570 2624000 D PFAM: Exonuclease, RNase T and DNA polymerase III Exonuclease-like; KEGG: pha:PSHAa1255 exodeoxyribonuclease I; exodeoxyribonuclease I 2622570..2624000 Pseudoalteromonas atlantica T6c 4173427 YP_661745.1 CDS Patl_2173 NC_008228.1 2624151 2625809 D PFAM: protein of unknown function DUF342; KEGG: cps:CPS_3684 hypothetical protein; hypothetical protein 2624151..2625809 Pseudoalteromonas atlantica T6c 4172325 YP_661746.1 CDS Patl_2174 NC_008228.1 2625905 2626141 R KEGG: sdn:Sden_3510 hypothetical protein; hypothetical protein complement(2625905..2626141) Pseudoalteromonas atlantica T6c 4172326 YP_661747.1 CDS Patl_2175 NC_008228.1 2626295 2627167 R PFAM: UDP-glucose/GDP-mannose dehydrogenase NADP oxidoreductase, coenzyme F420-dependent 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: ret:RHE_CH02433 probable 3-hydroxyisobutyrate dehydrogenase protein; 3-hydroxyisobutyrate dehydrogenase complement(2626295..2627167) Pseudoalteromonas atlantica T6c 4172327 YP_661748.1 CDS Patl_2176 NC_008228.1 2627298 2627729 D PFAM: glutathione peroxidase; KEGG: gka:GK1785 glutathione peroxidase; glutathione peroxidase 2627298..2627729 Pseudoalteromonas atlantica T6c 4172328 YP_661749.1 CDS Patl_2177 NC_008228.1 2627744 2628502 R PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: son:SO0558 smtA protein; type 11 methyltransferase complement(2627744..2628502) Pseudoalteromonas atlantica T6c 4172329 YP_661750.1 CDS Patl_2178 NC_008228.1 2628540 2629301 R PFAM: protein of unknown function DUF34; KEGG: vvy:VV1026 hypothetical protein; hypothetical protein complement(2628540..2629301) Pseudoalteromonas atlantica T6c 4172330 YP_661751.1 CDS Patl_2179 NC_008228.1 2629462 2630907 R PFAM: DNA photolyase, FAD-binding DNA photolyase-like; KEGG: pha:PSHAb0453 putative deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photolyase complement(2629462..2630907) Pseudoalteromonas atlantica T6c 4172331 YP_661752.1 CDS Patl_2180 NC_008228.1 2631132 2633741 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAb0299 putative TonB-dependent outer membrane receptor; TonB-dependent receptor complement(2631132..2633741) Pseudoalteromonas atlantica T6c 4172332 YP_661753.1 CDS Patl_2181 NC_008228.1 2634108 2635142 R SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease complement(2634108..2635142) Pseudoalteromonas atlantica T6c 4172333 YP_661754.1 CDS Patl_2182 NC_008228.1 2635239 2637857 R KEGG: pha:PSHAa1344 hypothetical protein; hypothetical protein complement(2635239..2637857) Pseudoalteromonas atlantica T6c 4172334 YP_661755.1 CDS Patl_2183 NC_008228.1 2638116 2638859 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ilo:IL1040 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2638116..2638859 Pseudoalteromonas atlantica T6c 4172335 YP_661756.1 CDS Patl_2184 NC_008228.1 2638971 2640647 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(2638971..2640647) Pseudoalteromonas atlantica T6c 4172336 YP_661757.1 CDS Patl_2185 NC_008228.1 2640933 2641952 D PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: son:SO2244 transcriptional regulator, LacI family; LacI family transcriptional regulator 2640933..2641952 Pseudoalteromonas atlantica T6c 4172337 YP_661758.1 CDS Patl_2186 NC_008228.1 2641997 2643727 R PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: xcb:XC_1648 cyclomaltodextrin glucanotransferase (CGTase); alpha amylase complement(2641997..2643727) Pseudoalteromonas atlantica T6c 4172338 YP_661759.1 CDS Patl_2187 NC_008228.1 2643750 2645258 R PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa1356 sugar transporter; major facilitator superfamily transporter complement(2643750..2645258) Pseudoalteromonas atlantica T6c 4172339 YP_661760.1 CDS Patl_2188 NC_008228.1 2645619 2646707 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: cvi:CV0239 hypothetical protein; diguanylate cyclase complement(2645619..2646707) Pseudoalteromonas atlantica T6c 4172340 YP_661761.1 CDS Patl_2189 NC_008228.1 2646920 2647366 R TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily; KEGG: rso:RSc1773 putative thioesterase protein; 4-hydroxybenzoyl-CoA thioesterase complement(2646920..2647366) Pseudoalteromonas atlantica T6c 4172341 YP_661762.1 CDS Patl_2190 NC_008228.1 2647569 2648339 R PFAM: Rhomboid-like protein; KEGG: xoo:XOO4627 hypothetical protein; rhomboid-like protein complement(2647569..2648339) Pseudoalteromonas atlantica T6c 4172342 YP_661763.1 CDS Patl_2191 NC_008228.1 2648548 2648913 D TIGRFAM: conserved hypothetical protein; PFAM: arsenate reductase and related; KEGG: ppr:PBPRA0845 hypothetical arsenate reductase; hypothetical protein 2648548..2648913 Pseudoalteromonas atlantica T6c 4172343 YP_661764.1 CDS Patl_2192 NC_008228.1 2648910 2650040 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2648910..2650040 Pseudoalteromonas atlantica T6c 4172344 YP_661765.1 CDS Patl_2193 NC_008228.1 2650037 2650738 D PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: ilo:IL1456 D-alanyl-D-alanine carboxypeptidase; peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins 2650037..2650738 Pseudoalteromonas atlantica T6c 4172345 YP_661766.1 CDS Patl_2194 NC_008228.1 2650965 2651291 R PFAM: protein of unknown function DUF74; KEGG: eca:ECA2666 hypothetical protein; hypothetical protein complement(2650965..2651291) Pseudoalteromonas atlantica T6c 4172346 YP_661767.1 CDS Patl_2195 NC_008228.1 2651408 2652460 R catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase complement(2651408..2652460) Pseudoalteromonas atlantica T6c 4172347 YP_661768.1 CDS Patl_2196 NC_008228.1 2652565 2653887 R PFAM: conserved hypothetical protein EAL; KEGG: pca:Pcar_2565 sensory box/GGDEF family protein; diguanylate cyclase/phosphodiesterase complement(2652565..2653887) Pseudoalteromonas atlantica T6c 4172348 YP_661769.1 CDS Patl_2197 NC_008228.1 2654049 2656544 R KEGG: vfi:VFA0810 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35; glycogen/starch/alpha-glucan phosphorylase complement(2654049..2656544) Pseudoalteromonas atlantica T6c 4172349 YP_661770.1 CDS Patl_2198 NC_008228.1 2656797 2658446 R catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase complement(2656797..2658446) Pseudoalteromonas atlantica T6c 4172350 YP_661771.1 CDS Patl_2199 NC_008228.1 2658460 2658984 R KEGG: ilo:IL1472 negative regulator of replication initiation; negative regulator of replication initiation complement(2658460..2658984) Pseudoalteromonas atlantica T6c 4172351 YP_661772.1 CDS Patl_2200 NC_008228.1 2659148 2660218 R KEGG: yps:YPTB3015 hypothetical protein; putative RNA 2'-O-ribose methyltransferase complement(2659148..2660218) Pseudoalteromonas atlantica T6c 4172352 YP_661773.1 CDS Patl_2201 NC_008228.1 2660222 2660593 R PFAM: protein of unknown function DUF423; KEGG: ppr:PBPRA2988 conserved hypothetical protein; hypothetical protein complement(2660222..2660593) Pseudoalteromonas atlantica T6c 4172353 YP_661774.1 CDS Patl_2202 NC_008228.1 2660695 2661318 R KEGG: pha:PSHAa1065 hypothetical protein; hypothetical protein complement(2660695..2661318) Pseudoalteromonas atlantica T6c 4172354 YP_661775.1 CDS Patl_2203 NC_008228.1 2661302 2662213 R Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA complement(2661302..2662213) Pseudoalteromonas atlantica T6c 4172355 YP_661776.1 CDS Patl_2204 NC_008228.1 2662433 2662717 D hypothetical protein 2662433..2662717 Pseudoalteromonas atlantica T6c 4172356 YP_661777.1 CDS Patl_2205 NC_008228.1 2662859 2663710 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(2662859..2663710) Pseudoalteromonas atlantica T6c 4172357 YP_661778.1 CDS Patl_2206 NC_008228.1 2664143 2665576 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 2664143..2665576 Pseudoalteromonas atlantica T6c 4172358 YP_661779.1 CDS Patl_2207 NC_008228.1 2665605 2666642 D PFAM: PhoH-like protein; KEGG: vpa:VP0732 PhoH family protein; PhoH-like protein 2665605..2666642 Pseudoalteromonas atlantica T6c 4172359 YP_661780.1 CDS Patl_2208 NC_008228.1 2666639 2667097 D PFAM: protein of unknown function UPF0054; KEGG: sbo:SBO_0523 hypothetical protein; hypothetical protein 2666639..2667097 Pseudoalteromonas atlantica T6c 4172360 YP_661781.1 CDS Patl_2209 NC_008228.1 2667131 2667991 D PFAM: CBS domain containing protein transporter-associated region; KEGG: ilo:IL0944 Mg/Co transporter; hypothetical protein 2667131..2667991 Pseudoalteromonas atlantica T6c 4172361 YP_661782.1 CDS Patl_2210 NC_008228.1 2668006 2669499 D TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: vfi:VF0755 apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 2668006..2669499 Pseudoalteromonas atlantica T6c 4172362 YP_661783.1 CDS Patl_2211 NC_008228.1 2669616 2670497 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: pha:PSHAa0058 hypothetical protein; hypothetical protein complement(2669616..2670497) Pseudoalteromonas atlantica T6c 4172363 YP_661784.1 CDS Patl_2212 NC_008228.1 2671058 2671618 D PFAM: ThiJ/PfpI; KEGG: eli:ELI_02220 protease; ThiJ/PfpI 2671058..2671618 Pseudoalteromonas atlantica T6c 4172364 YP_661785.1 CDS Patl_2213 NC_008228.1 2671778 2672254 R TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB region; KEGG: hit:NTHI1658 transcription elongation factor GreA; transcription elongation factor GreA complement(2671778..2672254) Pseudoalteromonas atlantica T6c 4172365 YP_661786.1 CDS carB NC_008228.1 2672354 2675572 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(2672354..2675572) Pseudoalteromonas atlantica T6c 4172366 YP_661787.1 CDS Patl_2215 NC_008228.1 2675611 2676756 R TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I Carbamoyl-phosphate synthase, small chain; KEGG: vch:VC2390 carbamoyl-phosphate synthase, small subunit; carbamoyl-phosphate synthase small subunit complement(2675611..2676756) Pseudoalteromonas atlantica T6c 4172367 YP_661788.1 CDS Patl_2216 NC_008228.1 2677047 2677850 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(2677047..2677850) Pseudoalteromonas atlantica T6c 4172368 YP_661789.1 CDS Patl_2217 NC_008228.1 2677940 2678413 R PFAM: regulatory proteins, AsnC/Lrp; KEGG: pha:PSHAa2263 leucine-responsive regulatory protein; AsnC family transcriptional regulator complement(2677940..2678413) Pseudoalteromonas atlantica T6c 4172369 YP_661790.1 CDS Patl_2218 NC_008228.1 2678590 2682396 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the protein from Pseudomonas does not have this domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(2678590..2682396) Pseudoalteromonas atlantica T6c 4172370 YP_661791.1 CDS Patl_2219 NC_008228.1 2682815 2683504 D PFAM: cytochrome B561; KEGG: cps:CPS_2796 cytochrome b561 family protein; cytochrome B561 2682815..2683504 Pseudoalteromonas atlantica T6c 4172371 YP_661792.1 CDS Patl_2220 NC_008228.1 2683689 2684390 R PFAM: protein of unknown function DUF541; KEGG: ilo:IL1740 hypothetical protein; hypothetical protein complement(2683689..2684390) Pseudoalteromonas atlantica T6c 4172372 YP_661793.1 CDS Patl_2221 NC_008228.1 2684534 2685385 R PFAM: Rhodanese-like; KEGG: vch:VCA0620 thiosulfate sulfurtransferase SseA, putative; 3-mercaptopyruvate sulfurtransferase complement(2684534..2685385) Pseudoalteromonas atlantica T6c 4172373 YP_661794.1 CDS Patl_2222 NC_008228.1 2685730 2687343 D PFAM: adenosine/AMP deaminase; KEGG: lpf:lpl0535 hypothetical protein; adenosine deaminase 2685730..2687343 Pseudoalteromonas atlantica T6c 4172374 YP_661795.1 CDS Patl_2223 NC_008228.1 2687391 2688851 D TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pfo:Pfl_2573 xanthine/uracil permease; uracil-xanthine permease 2687391..2688851 Pseudoalteromonas atlantica T6c 4172375 YP_661796.1 CDS Patl_2224 NC_008228.1 2689001 2690380 D catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.; hydroxydechloroatrazine ethylaminohydrolase 2689001..2690380 Pseudoalteromonas atlantica T6c 4172376 YP_661797.1 CDS Patl_2225 NC_008228.1 2690697 2693135 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC2660 TonB-dependent receptor; TonB-dependent receptor 2690697..2693135 Pseudoalteromonas atlantica T6c 4172377 YP_661798.1 CDS Patl_2226 NC_008228.1 2693219 2694946 D PFAM: protein of unknown function DUF985 purine nucleoside permease; KEGG: gox:GOX1437 purine nucleoside permease; purine nucleoside permease 2693219..2694946 Pseudoalteromonas atlantica T6c 4172378 YP_661799.1 CDS Patl_2227 NC_008228.1 2695242 2695547 D hypothetical protein 2695242..2695547 Pseudoalteromonas atlantica T6c 4172379 YP_661800.1 CDS Patl_2228 NC_008228.1 2695641 2696222 R PFAM: OmpA-like transmembrane region; KEGG: vpa:VP0636 putative outer membrane protein A; OmpA-like transmembrane region complement(2695641..2696222) Pseudoalteromonas atlantica T6c 4172380 YP_661801.1 CDS Patl_2229 NC_008228.1 2696765 2697982 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: biotin/lipoyl attachment secretion protein HlyD; KEGG: son:SO1925 HlyD family secretion protein; RND family efflux transporter MFP subunit 2696765..2697982 Pseudoalteromonas atlantica T6c 4172381 YP_661802.1 CDS Patl_2230 NC_008228.1 2697998 2701468 D PFAM: acriflavin resistance protein; KEGG: son:SO1924 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 2697998..2701468 Pseudoalteromonas atlantica T6c 4172382 YP_661803.1 CDS Patl_2231 NC_008228.1 2701461 2704583 D PFAM: acriflavin resistance protein; KEGG: son:SO1923 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 2701461..2704583 Pseudoalteromonas atlantica T6c 4172383 YP_661804.1 CDS Patl_2232 NC_008228.1 2704675 2705691 D PFAM: aldo/keto reductase; KEGG: atu:Atu1524 hypothetical protein; aldo/keto reductase 2704675..2705691 Pseudoalteromonas atlantica T6c 4172384 YP_661805.1 CDS Patl_2233 NC_008228.1 2705709 2706305 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: vfi:VF0653 23S rRNA methyltransferase; tRNA/rRNA methyltransferase SpoU 2705709..2706305 Pseudoalteromonas atlantica T6c 4172385 YP_661806.1 CDS Patl_2234 NC_008228.1 2706560 2707783 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: cps:CPS_0746 efflux transporter, MFP subunit, AcrA/E family; RND family efflux transporter MFP subunit 2706560..2707783 Pseudoalteromonas atlantica T6c 4172386 YP_661807.1 CDS Patl_2235 NC_008228.1 2707796 2710864 D PFAM: acriflavin resistance protein; KEGG: cps:CPS_0745 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 2707796..2710864 Pseudoalteromonas atlantica T6c 4172387 YP_661808.1 CDS Patl_2236 NC_008228.1 2710968 2713148 R PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region molybdopterin oxidoreductase Fe4S4 region; KEGG: hch:HCH_06645 anaerobic dehydrogenase, typically selenocysteine-containing; formate dehydrogenase complement(2710968..2713148) Pseudoalteromonas atlantica T6c 4172388 YP_661809.1 CDS Patl_2237 NC_008228.1 2713261 2713584 R PFAM: protein of unknown function DUF1272; KEGG: bja:blr0341 hypothetical protein; hypothetical protein complement(2713261..2713584) Pseudoalteromonas atlantica T6c 4172389 YP_661810.1 CDS Patl_2238 NC_008228.1 2713761 2715026 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: xcv:XCV3755 membrane fusion protein; RND family efflux transporter MFP subunit 2713761..2715026 Pseudoalteromonas atlantica T6c 4172390 YP_661811.1 CDS Patl_2239 NC_008228.1 2715099 2715800 D PFAM: ABC transporter related; SMART: ATPase; KEGG: xcb:XC_3665 ABC transporter ATP-binding protein; ABC transporter-like protein 2715099..2715800 Pseudoalteromonas atlantica T6c 4172391 YP_661812.1 CDS Patl_2240 NC_008228.1 2715793 2717100 D PFAM: protein of unknown function DUF214; KEGG: xac:XAC3640 ABC transporter ATP-binding protein; hypothetical protein 2715793..2717100 Pseudoalteromonas atlantica T6c 4172392 YP_661813.1 CDS Patl_2241 NC_008228.1 2717114 2718340 D PFAM: protein of unknown function DUF214; KEGG: xcb:XC_3667 ABC transporter permease; hypothetical protein 2717114..2718340 Pseudoalteromonas atlantica T6c 4172393 YP_661814.1 CDS Patl_2242 NC_008228.1 2718367 2719275 R KEGG: son:SO4005 hypothetical protein; hypothetical protein complement(2718367..2719275) Pseudoalteromonas atlantica T6c 4172394 YP_661815.1 CDS Patl_2243 NC_008228.1 2719281 2720555 R KEGG: son:SO4006 hypothetical protein; hypothetical protein complement(2719281..2720555) Pseudoalteromonas atlantica T6c 4172395 YP_661816.1 CDS Patl_2244 NC_008228.1 2720552 2721175 R KEGG: son:SO4007 hypothetical protein; hypothetical protein complement(2720552..2721175) Pseudoalteromonas atlantica T6c 4172396 YP_661817.1 CDS Patl_2245 NC_008228.1 2721172 2724873 R KEGG: son:SO4008 hypothetical protein; hypothetical protein complement(2721172..2724873) Pseudoalteromonas atlantica T6c 4172397 YP_661818.1 CDS Patl_2246 NC_008228.1 2726999 2729290 D PFAM: conserved hypothetical protein EAL; KEGG: ilo:IL1784 disrupted signaling protein (xGGDEF and EAL domains); diguanylate cyclase/phosphodiesterase 2726999..2729290 Pseudoalteromonas atlantica T6c 4172400 YP_661819.1 CDS Patl_2247 NC_008228.1 2729490 2731025 R TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer PAS fold-3 PAS fold; KEGG: pha:PSHAa0395 aerotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor complement(2729490..2731025) Pseudoalteromonas atlantica T6c 4172401 YP_661820.1 CDS Patl_2248 NC_008228.1 2731316 2732311 R PFAM: response regulator receiver metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region; KEGG: pha:PSHAa1150 response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase); response regulator receiver modulated metal dependent phosphohydrolase complement(2731316..2732311) Pseudoalteromonas atlantica T6c 4172402 YP_661821.1 CDS Patl_2249 NC_008228.1 2732348 2735779 R KEGG: pha:PSHAa1151 two-component member protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like MHYT PAS fold-3 PAS fold; SMART: PAS PAC motif; multi-sensor hybrid histidine kinase complement(2732348..2735779) Pseudoalteromonas atlantica T6c 4172403 YP_661822.1 CDS Patl_2250 NC_008228.1 2735920 2736387 D hypothetical protein 2735920..2736387 Pseudoalteromonas atlantica T6c 4172404 YP_661823.1 CDS Patl_2251 NC_008228.1 2736527 2737249 D PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: hch:HCH_04130 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two component transcriptional regulator 2736527..2737249 Pseudoalteromonas atlantica T6c 4172405 YP_661824.1 CDS Patl_2252 NC_008228.1 2737324 2738556 D PFAM: histidine kinase, HAMP region histidine kinase A-like; KEGG: hch:HCH_04334 signal transduction histidine kinase; histidine kinase 2737324..2738556 Pseudoalteromonas atlantica T6c 4172406 YP_661825.1 CDS Patl_2253 NC_008228.1 2738649 2740991 D TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL GAF; KEGG: dar:Daro_3445 PAS:GGDEF; GAF sensor-containing diguanylate cyclase/phosphodiesterase 2738649..2740991 Pseudoalteromonas atlantica T6c 4172407 YP_661826.1 CDS Patl_2254 NC_008228.1 2741107 2741541 D PFAM: regulatory protein, MarR; KEGG: pha:PSHAb0538 putative transcription regulator; MarR family transcriptional regulator 2741107..2741541 Pseudoalteromonas atlantica T6c 4172408 YP_661827.1 CDS Patl_2255 NC_008228.1 2741552 2742547 R PFAM: aldo/keto reductase; KEGG: eca:ECA0736 putative aldo/keto reductase; aldo/keto reductase complement(2741552..2742547) Pseudoalteromonas atlantica T6c 4172409 YP_661828.1 CDS Patl_2256 NC_008228.1 2742736 2743641 D PFAM: helix-turn-helix, AraC type AraC-type transcriptional regulator-like; KEGG: hch:HCH_03982 AraC-type DNA-binding domain-containing protein; AraC family transcriptional regulator 2742736..2743641 Pseudoalteromonas atlantica T6c 4172410 YP_661829.1 CDS Patl_2257 NC_008228.1 2743669 2747001 D PFAM: MscS Mechanosensitive ion channel; KEGG: noc:Noc_2151 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 2743669..2747001 Pseudoalteromonas atlantica T6c 4172411 YP_661830.1 CDS Patl_2258 NC_008228.1 2747216 2749342 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_1927 TonB dependent receptor; TonB-dependent receptor 2747216..2749342 Pseudoalteromonas atlantica T6c 4172412 YP_661831.1 CDS Patl_2259 NC_008228.1 2749403 2750167 R PFAM: Siderophore-interacting protein FAD-binding 9, siderophore-interacting; KEGG: pha:PSHAb0539 putative protein involved in iron transport; FAD-binding siderophore-interacting protein complement(2749403..2750167) Pseudoalteromonas atlantica T6c 4172413 YP_661832.1 CDS Patl_2260 NC_008228.1 2750349 2751179 R KEGG: LOC433220; similar to proline-rich antigen; hypothetical protein complement(2750349..2751179) Pseudoalteromonas atlantica T6c 4172414 YP_661833.1 CDS Patl_2261 NC_008228.1 2751309 2752019 R hypothetical protein complement(2751309..2752019) Pseudoalteromonas atlantica T6c 4172415 YP_661834.1 CDS Patl_2262 NC_008228.1 2752026 2752298 R PFAM: helix-turn-helix motif; XRE family transcriptional regulator complement(2752026..2752298) Pseudoalteromonas atlantica T6c 4172416 YP_661835.1 CDS Patl_2263 NC_008228.1 2752487 2754121 R PFAM: TrkA-N sodium/hydrogen exchanger; KEGG: cps:CPS_1761 putative glutathione-regulated potassium-efflux system protein KefB; sodium/hydrogen exchanger complement(2752487..2754121) Pseudoalteromonas atlantica T6c 4172417 YP_661836.1 CDS Patl_2264 NC_008228.1 2754457 2756322 D KEGG: gvi:gll2743 hypothetical protein; hypothetical protein 2754457..2756322 Pseudoalteromonas atlantica T6c 4172418 YP_661837.1 CDS Patl_2265 NC_008228.1 2756484 2756843 D KEGG: cps:CPS_1415 hypothetical protein; hypothetical protein 2756484..2756843 Pseudoalteromonas atlantica T6c 4172419 YP_661838.1 CDS Patl_2267 NC_008228.1 2757377 2758762 R TIGRFAM: gluconate transporter; PFAM: Gluconate transporter Citrate transporter; KEGG: vvy:VV0061 putative gluconate permease; gluconate transporter complement(2757377..2758762) Pseudoalteromonas atlantica T6c 4172421 YP_661839.1 CDS Patl_2268 NC_008228.1 2758996 2759349 R PFAM: Endoribonuclease L-PSP; KEGG: vfi:VFA0002 translation initiation inhibitor; endoribonuclease L-PSP complement(2758996..2759349) Pseudoalteromonas atlantica T6c 4172422 YP_661840.1 CDS Patl_2269 NC_008228.1 2759545 2762418 R PFAM: UvrD/REP helicase; KEGG: cps:CPS_2454 helicase IV; UvrD/REP helicase complement(2759545..2762418) Pseudoalteromonas atlantica T6c 4172423 YP_661841.1 CDS Patl_2270 NC_008228.1 2762637 2763257 R hypothetical protein complement(2762637..2763257) Pseudoalteromonas atlantica T6c 4172424 YP_661842.1 CDS Patl_2271 NC_008228.1 2764211 2764723 D KEGG: mma:MM3260 hypothetical protein; hypothetical protein 2764211..2764723 Pseudoalteromonas atlantica T6c 4172425 YP_661843.1 CDS Patl_2272 NC_008228.1 2764799 2765425 D PFAM: protein of unknown function UPF0126; KEGG: pha:PSHAb0445 hypothetical protein; hypothetical protein 2764799..2765425 Pseudoalteromonas atlantica T6c 4172426 YP_661844.1 CDS Patl_2273 NC_008228.1 2765464 2766147 R PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: bur:Bcep18194_C7101 2OG-Fe(II) oxygenase; putative hydroxylase complement(2765464..2766147) Pseudoalteromonas atlantica T6c 4172427 YP_661845.1 CDS Patl_2274 NC_008228.1 2766266 2767375 R PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: nwi:Nwi_0702 FMN-dependent alpha-hydroxy acid dehydrogenase; (S)-2-hydroxy-acid oxidase complement(2766266..2767375) Pseudoalteromonas atlantica T6c 4172428 YP_661846.1 CDS Patl_2275 NC_008228.1 2767476 2769815 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: rpa:RPA3480 putative outer membrane receptor for iron transport; TonB-dependent receptor complement(2767476..2769815) Pseudoalteromonas atlantica T6c 4172429 YP_661847.1 CDS Patl_2276 NC_008228.1 2769822 2770832 R TIGRFAM: TonB family protein; KEGG: pst:PSPTO0067 tonB protein; TonB family protein complement(2769822..2770832) Pseudoalteromonas atlantica T6c 4172430 YP_661848.1 CDS Patl_2277 NC_008228.1 2770832 2771251 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sbo:SBO_2999 ExbD; biopolymer transport protein ExbD/TolR complement(2770832..2771251) Pseudoalteromonas atlantica T6c 4172431 YP_661849.1 CDS Patl_2278 NC_008228.1 2771248 2771673 R KEGG: jan:Jann_2129 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(2771248..2771673) Pseudoalteromonas atlantica T6c 4172432 YP_661850.1 CDS Patl_2279 NC_008228.1 2771679 2772380 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: jan:Jann_2130 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(2771679..2772380) Pseudoalteromonas atlantica T6c 4172433 YP_661851.1 CDS Patl_2280 NC_008228.1 2772868 2773893 R KEGG: cps:CPS_2514 hypothetical protein; hypothetical protein complement(2772868..2773893) Pseudoalteromonas atlantica T6c 4172434 YP_661852.1 CDS Patl_2281 NC_008228.1 2773921 2776770 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding protein of unknown function DUF224, cysteine-rich region FAD linked oxidase-like; KEGG: vvy:VVA1265 Fe-S oxidoreductase; FAD linked oxidase-like protein complement(2773921..2776770) Pseudoalteromonas atlantica T6c 4172435 YP_661853.1 CDS Patl_2282 NC_008228.1 2777770 2779401 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 2777770..2779401 Pseudoalteromonas atlantica T6c 4172436 YP_661854.1 CDS Patl_2283 NC_008228.1 2779649 2780005 D PFAM: protein of unknown function DUF1428; KEGG: lpp:lpp2085 hypothetical protein; hypothetical protein 2779649..2780005 Pseudoalteromonas atlantica T6c 4172437 YP_661855.1 CDS Patl_2284 NC_008228.1 2780382 2782100 D PFAM: TrkA-N sodium/hydrogen exchanger; KEGG: hch:HCH_06854 Kef-type K+ transport system, predicted NAD-binding component; sodium/hydrogen exchanger 2780382..2782100 Pseudoalteromonas atlantica T6c 4172438 YP_661856.1 CDS Patl_2285 NC_008228.1 2782102 2783073 D PFAM: UspA; KEGG: noc:Noc_2951 universal stress protein, UspA; hypothetical protein 2782102..2783073 Pseudoalteromonas atlantica T6c 4172439 YP_661857.1 CDS Patl_2286 NC_008228.1 2783347 2786061 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase-like Haloacid dehalogenase-like hydrolase E1-E2 ATPase-associated region; KEGG: hch:HCH_06855 cation transport ATPase; P-type HAD superfamily ATPase 2783347..2786061 Pseudoalteromonas atlantica T6c 4172440 YP_661858.1 CDS Patl_2287 NC_008228.1 2786213 2787022 R PFAM: oxidoreductase FAD/NAD(P)-binding Oxidoreductase FAD-binding region; KEGG: ilo:IL2501 ferredoxin-NADP reductase; ferredoxin--NADP(+) reductase complement(2786213..2787022) Pseudoalteromonas atlantica T6c 4172441 YP_661859.1 CDS Patl_2288 NC_008228.1 2787537 2790827 D PFAM: phosphorylase kinase alphabeta; KEGG: syf:Synpcc7942_1650 phosphorylase kinase alpha subunit; phosphorylase kinase alphabeta 2787537..2790827 Pseudoalteromonas atlantica T6c 4172442 YP_661860.1 CDS Patl_2289 NC_008228.1 2791181 2791795 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cps:CPS_4719 transporter, LysE family; lysine exporter protein LysE/YggA 2791181..2791795 Pseudoalteromonas atlantica T6c 4172443 YP_661861.1 CDS Patl_2290 NC_008228.1 2791889 2792536 R PFAM: regulatory protein, LuxR response regulator receiver Sigma-70, region 4 type 2; KEGG: cps:CPS_1406 DNA-binding response regulator; two component LuxR family transcriptional regulator complement(2791889..2792536) Pseudoalteromonas atlantica T6c 4172444 YP_661862.1 CDS Patl_2291 NC_008228.1 2792533 2793927 R PFAM: ATP-binding region, ATPase-like histidine kinase, dimerisation and phosphoacceptor region Cache, type 2; KEGG: cps:CPS_1405 sensor histidine kinase; sensor signal transduction histidine kinase complement(2792533..2793927) Pseudoalteromonas atlantica T6c 4172445 YP_661863.1 CDS Patl_2292 NC_008228.1 2794171 2795244 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: cps:CPS_0129 extracellular solute-binding protein, family 7; TRAP dicarboxylate transporter subunit DctP 2794171..2795244 Pseudoalteromonas atlantica T6c 4172446 YP_661864.1 CDS Patl_2293 NC_008228.1 2795386 2795916 D PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: cps:CPS_0130 C4-dicarboxylate transporter family protein, DctQ subunit; tripartite ATP-independent periplasmic transporter DctQ 2795386..2795916 Pseudoalteromonas atlantica T6c 4172447 YP_661865.1 CDS Patl_2294 NC_008228.1 2795916 2797196 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: cps:CPS_0131 C4-dicarboxylate transporter family protein, DctM subunit; TRAP dicarboxylate transporter subunit DctM 2795916..2797196 Pseudoalteromonas atlantica T6c 4172448 YP_661866.1 CDS Patl_2295 NC_008228.1 2797215 2798246 D hypothetical protein 2797215..2798246 Pseudoalteromonas atlantica T6c 4172449 YP_661867.1 CDS Patl_2296 NC_008228.1 2798350 2798730 D hypothetical protein 2798350..2798730 Pseudoalteromonas atlantica T6c 4172450 YP_661868.1 CDS Patl_2297 NC_008228.1 2798796 2799338 R PFAM: superoxide dismutase, copper/zinc binding; KEGG: vpa:VPA1514 superoxide dismutase, Cu-Zn; superoxide dismutase, copper/zinc binding complement(2798796..2799338) Pseudoalteromonas atlantica T6c 4172451 YP_661869.1 CDS Patl_2298 NC_008228.1 2799741 2800136 D hypothetical protein 2799741..2800136 Pseudoalteromonas atlantica T6c 4172452 YP_661870.1 CDS Patl_2299 NC_008228.1 2800292 2800537 D hypothetical protein 2800292..2800537 Pseudoalteromonas atlantica T6c 4172453 YP_661871.1 CDS Patl_2300 NC_008228.1 2800762 2801205 R PFAM: protein of unknown function, Spy-related; KEGG: cps:CPS_1751 hypothetical protein; hypothetical protein complement(2800762..2801205) Pseudoalteromonas atlantica T6c 4172454 YP_661872.1 CDS Patl_2301 NC_008228.1 2801373 2802107 D PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: ngo:NGO0177 putative two-component system transcriptional response regulator; two component transcriptional regulator 2801373..2802107 Pseudoalteromonas atlantica T6c 4172455 YP_661873.1 CDS Patl_2302 NC_008228.1 2802110 2803462 D PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: ppu:PP4505 sensor histidine kinase; sensor signal transduction histidine kinase 2802110..2803462 Pseudoalteromonas atlantica T6c 4172456 YP_661874.1 CDS Patl_2303 NC_008228.1 2803538 2804794 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bbr:BB1107 ferredoxin reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2803538..2804794) Pseudoalteromonas atlantica T6c 4172457 YP_661875.1 CDS Patl_2304 NC_008228.1 2804883 2805191 R PFAM: ferredoxin; KEGG: bbr:BB3144 putative ferredoxin; ferredoxin complement(2804883..2805191) Pseudoalteromonas atlantica T6c 4172458 YP_661876.1 CDS Patl_2305 NC_008228.1 2805288 2806445 R PFAM: cytochrome P450; KEGG: mlo:mlr5876 cytochrome P450; cytochrome P450 complement(2805288..2806445) Pseudoalteromonas atlantica T6c 4172459 YP_661877.1 CDS Patl_2306 NC_008228.1 2806652 2807527 R PFAM: helix-turn-helix, AraC type; KEGG: vvu:VV21452 AraC-type DNA-binding domain-containing protein; AraC family transcriptional regulator complement(2806652..2807527) Pseudoalteromonas atlantica T6c 4172460 YP_661878.1 CDS Patl_2307 NC_008228.1 2807682 2808800 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: gka:GK2774 alcohol dehydrogenase; zinc-binding alcohol dehydrogenase 2807682..2808800 Pseudoalteromonas atlantica T6c 4172461 YP_661879.1 CDS Patl_2308 NC_008228.1 2808814 2809626 D PFAM: putative esterase; KEGG: bur:Bcep18194_B0523 putative esterase; putative esterase 2808814..2809626 Pseudoalteromonas atlantica T6c 4172462 YP_661880.1 CDS Patl_2309 NC_008228.1 2809739 2810389 R TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: pha:PSHAa1310 signal peptidase I protein; signal peptidase I complement(2809739..2810389) Pseudoalteromonas atlantica T6c 4172463 YP_661881.1 CDS Patl_2310 NC_008228.1 2810713 2812869 D KEGG: ppr:PBPRB0205 hypothetical FOG: GGDEF domain; TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; diguanylate cyclase 2810713..2812869 Pseudoalteromonas atlantica T6c 4172464 YP_661882.1 CDS Patl_2311 NC_008228.1 2813027 2814148 D PFAM: Alcohol dehydrogenase GroES-like; KEGG: reu:Reut_A1899 possible NADH oxidoreductase; alcohol dehydrogenase GroES-like protein 2813027..2814148 Pseudoalteromonas atlantica T6c 4172465 YP_661883.1 CDS Patl_2312 NC_008228.1 2814356 2815264 D PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: vpa:VPA1589 transcriptional regulator, LysR family; LysR family transcriptional regulator 2814356..2815264 Pseudoalteromonas atlantica T6c 4172466 YP_661884.1 CDS Patl_2313 NC_008228.1 2815323 2816150 R PFAM: transcriptional regulatory protein-like; KEGG: cps:CPS_3214 putative transcriptional regulator; response regulator receiver protein complement(2815323..2816150) Pseudoalteromonas atlantica T6c 4172467 YP_661885.1 CDS Patl_2314 NC_008228.1 2816775 2818733 D KEGG: hsa:1834 dentin sialophosphoprotein; dentin sialophosphoprotein 2816775..2818733 Pseudoalteromonas atlantica T6c 4172468 YP_661886.1 CDS Patl_2315 NC_008228.1 2818815 2819162 D KEGG: cps:CPS_3211 hypothetical protein; hypothetical protein 2818815..2819162 Pseudoalteromonas atlantica T6c 4172469 YP_661887.1 CDS Patl_2316 NC_008228.1 2819182 2819853 D PFAM: peptidase C39, bacteriocin processing; KEGG: cps:CPS_3210 peptidase, C39 family; peptidase C39, bacteriocin processing 2819182..2819853 Pseudoalteromonas atlantica T6c 4172470 YP_661888.1 CDS Patl_2317 NC_008228.1 2819869 2820351 D KEGG: cps:CPS_3209 hypothetical protein; hypothetical protein 2819869..2820351 Pseudoalteromonas atlantica T6c 4172471 YP_661889.1 CDS Patl_2318 NC_008228.1 2820497 2821822 R KEGG: cps:CPS_3207 hypothetical protein; hypothetical protein complement(2820497..2821822) Pseudoalteromonas atlantica T6c 4172472 YP_661890.1 CDS Patl_2319 NC_008228.1 2822118 2824415 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_2088 TonB-dependent receptor; TonB-dependent receptor complement(2822118..2824415) Pseudoalteromonas atlantica T6c 4172473 YP_661891.1 CDS Patl_2320 NC_008228.1 2824739 2825614 D PFAM: putative cyclase; KEGG: mbo:Mb1744 hypothetical protein; putative cyclase 2824739..2825614 Pseudoalteromonas atlantica T6c 4172474 YP_661892.1 CDS Patl_2321 NC_008228.1 2825740 2826651 D PFAM: 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: bbr:BB1500 putative 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase 2825740..2826651 Pseudoalteromonas atlantica T6c 4172475 YP_661893.1 CDS Patl_2322 NC_008228.1 2826655 2827587 D PFAM: protein of unknown function DUF849; KEGG: eli:ELI_10685 hypothetical protein; hypothetical protein 2826655..2827587 Pseudoalteromonas atlantica T6c 4172476 YP_661894.1 CDS Patl_2323 NC_008228.1 2827679 2828023 D PFAM: Cupin 2, conserved barrel; KEGG: afu:AF1208 hypothetical protein; cupin 2 barrel domain-containing protein 2827679..2828023 Pseudoalteromonas atlantica T6c 4172477 YP_661895.1 CDS Patl_2324 NC_008228.1 2828023 2828823 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mbo:Mb1741 probable oxidoreductase; short-chain dehydrogenase/reductase SDR 2828023..2828823 Pseudoalteromonas atlantica T6c 4172478 YP_661896.1 CDS Patl_2325 NC_008228.1 2828902 2830371 D PFAM: Na+/solute symporter; KEGG: afu:AF1205 pantothenate permease (PanF-2); Na+/solute symporter 2828902..2830371 Pseudoalteromonas atlantica T6c 4172479 YP_661897.1 CDS Patl_2326 NC_008228.1 2830702 2831475 R PFAM: regulatory proteins, IclR; KEGG: mbo:Mb1748 probable transcriptional regulatory protein; IclR family transcriptional regulator complement(2830702..2831475) Pseudoalteromonas atlantica T6c 4172480 YP_661898.1 CDS Patl_2327 NC_008228.1 2831609 2832016 R PFAM: DoxX; KEGG: cps:CPS_3329 hypothetical protein; DoxX protein complement(2831609..2832016) Pseudoalteromonas atlantica T6c 4172481 YP_661899.1 CDS Patl_2328 NC_008228.1 2832309 2834012 D PFAM: pseudouridine synthase; KEGG: vfi:VFA0485 ribosomal large subunit pseudouridine synthase A; pseudouridine synthase 2832309..2834012 Pseudoalteromonas atlantica T6c 4172482 YP_661900.1 CDS Patl_2329 NC_008228.1 2834121 2835560 D PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa0442 transport protein (MFS); major facilitator superfamily transporter 2834121..2835560 Pseudoalteromonas atlantica T6c 4172483 YP_661901.1 CDS Patl_2330 NC_008228.1 2835661 2836941 R PFAM: helicase-like DEAD/DEAH box helicase-like; KEGG: son:SO1383 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase complement(2835661..2836941) Pseudoalteromonas atlantica T6c 4172484 YP_661902.1 CDS Patl_2331 NC_008228.1 2837508 2838431 R PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: reu:Reut_A1003 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator complement(2837508..2838431) Pseudoalteromonas atlantica T6c 4172485 YP_661903.1 CDS Patl_2332 NC_008228.1 2838513 2839319 D PFAM: class II aldolase/adducin-like; KEGG: rso:RSc1767 hypothetical protein; hypothetical protein 2838513..2839319 Pseudoalteromonas atlantica T6c 4172486 YP_661904.1 CDS Patl_2333 NC_008228.1 2839388 2840308 R KEGG: pha:PSHAa1891 hypothetical protein; hypothetical protein complement(2839388..2840308) Pseudoalteromonas atlantica T6c 4172487 YP_661905.1 CDS Patl_2334 NC_008228.1 2840532 2840918 R KEGG: ret:RHE_CH03726 hypothetical protein; hypothetical protein complement(2840532..2840918) Pseudoalteromonas atlantica T6c 4172488 YP_661906.1 CDS Patl_2335 NC_008228.1 2841058 2841696 R PFAM: metal-dependent phosphohydrolase, HD subdomain; KEGG: pha:PSHAa1148 two-component regulator with metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase complement(2841058..2841696) Pseudoalteromonas atlantica T6c 4172489 YP_661907.1 CDS Patl_2336 NC_008228.1 2841871 2842206 R KEGG: pha:PSHAa1600 cold-shock DNA-binding domain; hypothetical protein complement(2841871..2842206) Pseudoalteromonas atlantica T6c 4172490 YP_661908.1 CDS Patl_2337 NC_008228.1 2842332 2843108 R SMART: extracellular solute-binding protein, family 3; KEGG: cps:CPS_2474 bacterial extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(2842332..2843108) Pseudoalteromonas atlantica T6c 4172491 YP_661909.1 CDS Patl_2338 NC_008228.1 2843349 2845868 R PFAM: glycoside hydrolase, family 31; KEGG: cps:CPS_0983 glycosyl hydrolase, family 31; alpha-glucosidase complement(2843349..2845868) Pseudoalteromonas atlantica T6c 4172492 YP_661910.1 CDS Patl_2339 NC_008228.1 2845918 2846784 R PFAM: putative esterase; KEGG: pfu:PF1108 putative alpha-dextrin endo-1,6-alpha-glucosidase; putative esterase complement(2845918..2846784) Pseudoalteromonas atlantica T6c 4172493 YP_661911.1 CDS Patl_2340 NC_008228.1 2846832 2848784 R PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: ppr:PBPRB0415 putative glycosidase; alpha amylase complement(2846832..2848784) Pseudoalteromonas atlantica T6c 4172494 YP_661912.1 CDS Patl_2341 NC_008228.1 2849088 2852603 D PFAM: Ig-like, group 2; KEGG: rba:RB3421 probable beta-agarase [precursor]; agarase 2849088..2852603 Pseudoalteromonas atlantica T6c 4172495 YP_661913.1 CDS Patl_2342 NC_008228.1 2852635 2853162 D hypothetical protein 2852635..2853162 Pseudoalteromonas atlantica T6c 4172496 YP_661914.1 CDS Patl_2343 NC_008228.1 2853440 2853937 D PFAM: GAF; KEGG: pfl:PFL_3308 diguanylate cyclase, putative; putative GAF sensor protein 2853440..2853937 Pseudoalteromonas atlantica T6c 4172497 YP_661915.1 CDS Patl_2344 NC_008228.1 2854044 2855309 R PFAM: UMUC-like DNA-repair protein; KEGG: cps:CPS_2682 UmuC protein; DNA-directed DNA polymerase complement(2854044..2855309) Pseudoalteromonas atlantica T6c 4172498 YP_661916.1 CDS Patl_2345 NC_008228.1 2855309 2855713 R PFAM: peptidase S24, S26A and S26B; KEGG: son:SOA0013 umuD protein; putative prophage repressor complement(2855309..2855713) Pseudoalteromonas atlantica T6c 4172499 YP_661917.1 CDS Patl_2347 NC_008228.1 2856590 2856994 D KEGG: ilo:IL1817 hypothetical protein; hypothetical protein 2856590..2856994 Pseudoalteromonas atlantica T6c 4172501 YP_661918.1 CDS Patl_2348 NC_008228.1 2857084 2859393 R KEGG: pha:PSHAa1996 conserved protein of unknown function; enzyme; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(2857084..2859393) Pseudoalteromonas atlantica T6c 4172502 YP_661919.1 CDS Patl_2349 NC_008228.1 2859440 2859925 R KEGG: noc:Noc_2695 hypothetical protein; hypothetical protein complement(2859440..2859925) Pseudoalteromonas atlantica T6c 4172503 YP_661920.1 CDS Patl_2350 NC_008228.1 2860297 2861403 D KEGG: hypothetical protein; hypothetical protein 2860297..2861403 Pseudoalteromonas atlantica T6c 4172504 YP_661921.1 CDS Patl_2351 NC_008228.1 2861567 2862541 R PFAM: HPP domain containing protein+B94; KEGG: tcx:Tcr_1929 HPP; HPP domain-containing protein complement(2861567..2862541) Pseudoalteromonas atlantica T6c 4172505 YP_661922.1 CDS Patl_2352 NC_008228.1 2862771 2863430 R hypothetical protein complement(2862771..2863430) Pseudoalteromonas atlantica T6c 4172506 YP_661923.1 CDS Patl_2353 NC_008228.1 2863774 2864739 D KEGG: pha:PSHAb0153 hypothetical protein; hypothetical protein 2863774..2864739 Pseudoalteromonas atlantica T6c 4172507 YP_661924.1 CDS Patl_2354 NC_008228.1 2864861 2865148 D KEGG: mag:amb4351 hypothetical protein; hypothetical protein 2864861..2865148 Pseudoalteromonas atlantica T6c 4172508 YP_661925.1 CDS Patl_2355 NC_008228.1 2865348 2865932 R KEGG: hch:HCH_01554 hypothetical protein; hypothetical protein complement(2865348..2865932) Pseudoalteromonas atlantica T6c 4172509 YP_661926.1 CDS Patl_2356 NC_008228.1 2866018 2868657 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(2866018..2868657) Pseudoalteromonas atlantica T6c 4172510 YP_661927.1 CDS Patl_2357 NC_008228.1 2868973 2870313 D catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 2868973..2870313 Pseudoalteromonas atlantica T6c 4172511 YP_661928.1 CDS Patl_2358 NC_008228.1 2870436 2872619 R PFAM: Ig-like, group 1; KEGG: yps:YPTB3789 possible bacterial Ig-like domain (group 1); Ig-like protein complement(2870436..2872619) Pseudoalteromonas atlantica T6c 4172512 YP_661929.1 CDS Patl_2359 NC_008228.1 2872745 2874094 D PFAM: sodium:dicarboxylate symporter; KEGG: cps:CPS_1194 putative proton/glutamate symporter; sodium:dicarboxylate symporter 2872745..2874094 Pseudoalteromonas atlantica T6c 4172513 YP_661930.1 CDS Patl_2360 NC_008228.1 2874212 2875447 R TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: cps:CPS_3477 lipoprotein releasing system transmembrane protein LolE; LolC/E family lipoprotein releasing system, transmembrane protein complement(2874212..2875447) Pseudoalteromonas atlantica T6c 4172514 YP_661931.1 CDS Patl_2361 NC_008228.1 2875461 2876144 R KEGG: ecc:c1392 lipoprotein releasing system ATP-binding protein lolD; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase; lipoprotein releasing system, ATP-binding protein complement(2875461..2876144) Pseudoalteromonas atlantica T6c 4172515 YP_661932.1 CDS Patl_2362 NC_008228.1 2876185 2877234 R PFAM: CBS domain containing protein protein of unknown function DUF21; KEGG: sru:SRU_0924 domain of unknown function domain protein; hypothetical protein complement(2876185..2877234) Pseudoalteromonas atlantica T6c 4172516 YP_661933.1 CDS Patl_2363 NC_008228.1 2877929 2879374 R KEGG: cps:CPS_2256 hypothetical protein; hypothetical protein complement(2877929..2879374) Pseudoalteromonas atlantica T6c 4172520 YP_661934.1 CDS Patl_2364 NC_008228.1 2879404 2880111 R KEGG: ilo:IL1693 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(2879404..2880111) Pseudoalteromonas atlantica T6c 4172521 YP_661935.1 CDS rnhA NC_008228.1 2880192 2880653 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 2880192..2880653 Pseudoalteromonas atlantica T6c 4172522 YP_661936.1 CDS Patl_2366 NC_008228.1 2880709 2881065 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rba:RB3321 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(2880709..2881065) Pseudoalteromonas atlantica T6c 4172523 YP_661937.1 CDS Patl_2367 NC_008228.1 2881294 2883156 D TIGRFAM: signal peptide peptidase SppA, 67K type signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: pha:PSHAa1409 protease IV, a signal peptide peptidase; signal peptide peptidase SppA, 67K type 2881294..2883156 Pseudoalteromonas atlantica T6c 4172524 YP_661938.1 CDS Patl_2368 NC_008228.1 2883264 2883794 D PFAM: protein of unknown function DUF335, SprT; SMART: Protein of unknown function SprT; KEGG: vfi:VF0438 SprT protein; hypothetical protein 2883264..2883794 Pseudoalteromonas atlantica T6c 4172525 YP_661939.1 CDS Patl_2369 NC_008228.1 2883791 2884237 R PFAM: protein of unknown function DUF412; KEGG: vvy:VV2132 hypothetical protein; hypothetical protein complement(2883791..2884237) Pseudoalteromonas atlantica T6c 4172526 YP_661940.1 CDS Patl_2370 NC_008228.1 2884496 2885446 D TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pha:PSHAa1720 thioredoxin reductase, FAD/NAD(P)-binding; thioredoxin reductase 2884496..2885446 Pseudoalteromonas atlantica T6c 4172527 YP_661941.1 CDS aat NC_008228.1 2885498 2886202 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2885498..2886202 Pseudoalteromonas atlantica T6c 4172528 YP_661942.1 CDS Patl_2372 NC_008228.1 2886202 2886897 D Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 2886202..2886897 Pseudoalteromonas atlantica T6c 4172529 YP_661943.1 CDS infA NC_008228.1 2886978 2887196 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2886978..2887196 Pseudoalteromonas atlantica T6c 4172530 YP_661944.1 CDS Patl_2374 NC_008228.1 2887305 2889572 R KEGG: pha:PSHAa1724 ATP-dependent specificity subunit of ClpA-ClpP serine protease; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central region Clp, N terminal ATPase associated with various cellular activities, AAA_5 ATPase AAA-2; SMART: ATPase; ATP-dependent Clp protease ATP-binding protein ClpA complement(2887305..2889572) Pseudoalteromonas atlantica T6c 4172531 YP_661945.1 CDS clpS NC_008228.1 2889593 2889913 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS complement(2889593..2889913) Pseudoalteromonas atlantica T6c 4172532 YP_661946.1 CDS Patl_2376 NC_008228.1 2890079 2890333 D KEGG: ecc:c1017 cold shock-like protein cspD; TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 2890079..2890333 Pseudoalteromonas atlantica T6c 4172533 YP_661947.1 CDS Patl_2377 NC_008228.1 2890395 2892626 R KEGG: eba:ebA832 isocitrate dehydrogenase isozyme 2, monomeric type, NADP-specific; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; isocitrate dehydrogenase complement(2890395..2892626) Pseudoalteromonas atlantica T6c 4174125 YP_661948.1 CDS Patl_2378 NC_008228.1 2892853 2893431 D TIGRFAM: Pseudouridine synthase, Rsu; PFAM: pseudouridine synthase; KEGG: vch:VC1140 pseudouridine synthase family 1 protein; pseudouridine synthase Rsu 2892853..2893431 Pseudoalteromonas atlantica T6c 4174126 YP_661949.1 CDS mnmA NC_008228.1 2893484 2894674 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2893484..2894674 Pseudoalteromonas atlantica T6c 4174127 YP_661950.1 CDS Patl_2380 NC_008228.1 2894674 2895333 D HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 2894674..2895333 Pseudoalteromonas atlantica T6c 4174128 YP_661951.1 CDS Patl_2381 NC_008228.1 2895347 2896714 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2895347..2896714 Pseudoalteromonas atlantica T6c 4174129 YP_661952.1 CDS Patl_2382 NC_008228.1 2896848 2898071 D PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: ana:all0661 adenylate cyclase; adenylate/guanylate cyclase 2896848..2898071 Pseudoalteromonas atlantica T6c 4174130 YP_661953.1 CDS Patl_2383 NC_008228.1 2898138 2899307 D PFAM: Cupin 4 Transcription factor jumonji; SMART: Transcription factor jumonji/aspartyl beta-hydroxylase; KEGG: stm:STM1229 putative cytoplasmic protein; cupin 4 2898138..2899307 Pseudoalteromonas atlantica T6c 4174131 YP_661954.1 CDS Patl_2384 NC_008228.1 2899458 2900300 R KEGG: son:SO2711 hypothetical protein; hypothetical protein complement(2899458..2900300) Pseudoalteromonas atlantica T6c 4174132 YP_661955.1 CDS Patl_2385 NC_008228.1 2900406 2901224 R PFAM: response regulator receiver LytTr DNA-binding region; KEGG: ilo:IL1261 response regulator of the LytR/AlgR family; response regulator receiver protein complement(2900406..2901224) Pseudoalteromonas atlantica T6c 4174133 YP_661956.1 CDS Patl_2386 NC_008228.1 2901214 2902296 R PFAM: ATP-binding region, ATPase-like histidine kinase internal region; KEGG: cps:CPS_2277 sensor histidine kinase; signal transduction histidine kinase LytS complement(2901214..2902296) Pseudoalteromonas atlantica T6c 4174134 YP_661957.1 CDS Patl_2387 NC_008228.1 2902433 2902894 R PFAM: protein of unknown function DUF962; KEGG: lic:LIC11677 hypothetical protein; hypothetical protein complement(2902433..2902894) Pseudoalteromonas atlantica T6c 4174135 YP_661958.1 CDS Patl_2388 NC_008228.1 2902987 2903613 R PFAM: type IV pilus assembly PilZ; KEGG: ilo:IL2319 predicted glycosyltransferase; type IV pilus assembly PilZ complement(2902987..2903613) Pseudoalteromonas atlantica T6c 4174136 YP_661959.1 CDS Patl_2389 NC_008228.1 2903830 2905680 D PFAM: peptidase M61; SMART: PDZ/DHR/GLGF; KEGG: noc:Noc_1493 peptidase M61; peptidase M61 2903830..2905680 Pseudoalteromonas atlantica T6c 4174137 YP_661960.1 CDS Patl_2390 NC_008228.1 2905949 2906989 D KEGG: spo:SPBC1683.02 putative adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; adenosine deaminase 2905949..2906989 Pseudoalteromonas atlantica T6c 4174138 YP_661961.1 CDS Patl_2391 NC_008228.1 2907223 2908224 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: syn:slr1192 zinc-containing alcohol dehydrogenase family; zinc-binding alcohol dehydrogenase 2907223..2908224 Pseudoalteromonas atlantica T6c 4174139 YP_661962.1 CDS Patl_2392 NC_008228.1 2908298 2911435 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: pha:PSHAa0305 cation efflux system protein; CzcA family heavy metal efflux protein complement(2908298..2911435) Pseudoalteromonas atlantica T6c 4174140 YP_661963.1 CDS Patl_2393 NC_008228.1 2911432 2913009 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cps:CPS_4857 cation efflux system protein CusB; RND family efflux transporter MFP subunit complement(2911432..2913009) Pseudoalteromonas atlantica T6c 4174141 YP_661964.1 CDS Patl_2394 NC_008228.1 2913006 2914469 R KEGG: ilo:IL1224 outer membrane efflux protein; outer membrane efflux protein complement(2913006..2914469) Pseudoalteromonas atlantica T6c 4174142 YP_661965.1 CDS Patl_2395 NC_008228.1 2914684 2915178 R hypothetical protein complement(2914684..2915178) Pseudoalteromonas atlantica T6c 4174143 YP_661966.1 CDS Patl_2396 NC_008228.1 2915504 2916571 R PFAM: sodium/hydrogen exchanger; KEGG: ftu:FTT0669 sodium/hydrogen exchanger family protein; sodium/hydrogen exchanger complement(2915504..2916571) Pseudoalteromonas atlantica T6c 4174144 YP_661967.1 CDS Patl_2397 NC_008228.1 2917252 2917518 D TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; PFAM: zinc finger, DksA/TraR C4-type; KEGG: ilo:IL0756 DnaK suppressor protein; hypothetical protein 2917252..2917518 Pseudoalteromonas atlantica T6c 4174145 YP_661968.1 CDS Patl_2398 NC_008228.1 2918061 2918672 D KEGG: pfo:Pfl_3563 hypothetical protein; hypothetical protein 2918061..2918672 Pseudoalteromonas atlantica T6c 4174146 YP_661969.1 CDS Patl_2399 NC_008228.1 2918743 2919714 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bur:Bcep18194_A3790 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(2918743..2919714) Pseudoalteromonas atlantica T6c 4174147 YP_661970.1 CDS Patl_2400 NC_008228.1 2919822 2921900 D PFAM: NADH:flavin oxidoreductase/NADH oxidase FAD-dependent pyridine nucleotide-disulphide oxidoreductase HI0933-like protein; KEGG: cps:CPS_0925 2,4-dienoyl-CoA reductase; NADH:flavin oxidoreductase 2919822..2921900 Pseudoalteromonas atlantica T6c 4174148 YP_661971.1 CDS Patl_2401 NC_008228.1 2922027 2923004 R hypothetical protein complement(2922027..2923004) Pseudoalteromonas atlantica T6c 4174149 YP_661972.1 CDS Patl_2402 NC_008228.1 2923229 2925403 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_4213 putative ferric aerobactin receptor; TonB-dependent receptor, plug 2923229..2925403 Pseudoalteromonas atlantica T6c 4174150 YP_661973.1 CDS Patl_2403 NC_008228.1 2925493 2926674 D PFAM: PepSY-associated TM helix; KEGG: pha:PSHAb0287 putative uncharacterized iron-regulated membrane protein; PepSY-associated TM helix-containing protein 2925493..2926674 Pseudoalteromonas atlantica T6c 4174151 YP_661974.1 CDS Patl_2404 NC_008228.1 2926936 2927400 D KEGG: eli:ELI_05360 general stress protein; general stress protein 2926936..2927400 Pseudoalteromonas atlantica T6c 4174152 YP_661975.1 CDS Patl_2405 NC_008228.1 2927780 2929111 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO3694 HlyD family secretion protein; RND family efflux transporter MFP subunit 2927780..2929111 Pseudoalteromonas atlantica T6c 4174153 YP_661976.1 CDS Patl_2406 NC_008228.1 2929306 2930049 D PFAM: ABC transporter related; SMART: ATPase; KEGG: xcb:XC_3665 ABC transporter ATP-binding protein; ABC transporter-like protein 2929306..2930049 Pseudoalteromonas atlantica T6c 4174154 YP_661977.1 CDS Patl_2407 NC_008228.1 2930059 2931375 D PFAM: protein of unknown function DUF214; KEGG: xcb:XC_3666 ABC transporter ATP-binding protein; hypothetical protein 2930059..2931375 Pseudoalteromonas atlantica T6c 4174155 YP_661978.1 CDS Patl_2408 NC_008228.1 2931383 2932636 D PFAM: protein of unknown function DUF214; KEGG: xcb:XC_3667 ABC transporter permease; hypothetical protein 2931383..2932636 Pseudoalteromonas atlantica T6c 4174156 YP_661979.1 CDS Patl_2409 NC_008228.1 2932887 2933438 D PFAM: protein of unknown function UPF0016; KEGG: pha:PSHAb0280 hypothetical protein; hypothetical protein 2932887..2933438 Pseudoalteromonas atlantica T6c 4174158 YP_661980.1 CDS Patl_2410 NC_008228.1 2933657 2934028 D PFAM: glutaredoxin; KEGG: pae:PA1741 hypothetical protein; glutaredoxin 2933657..2934028 Pseudoalteromonas atlantica T6c 4174159 YP_661981.1 CDS Patl_2411 NC_008228.1 2934165 2934608 D KEGG: cps:CPS_3134 hypothetical protein; hypothetical protein 2934165..2934608 Pseudoalteromonas atlantica T6c 4174160 YP_661982.1 CDS Patl_2412 NC_008228.1 2934804 2935541 R PFAM: protein of unknown function DUF541; KEGG: dps:DP0874 hypothetical protein; hypothetical protein complement(2934804..2935541) Pseudoalteromonas atlantica T6c 4174161 YP_661983.1 CDS Patl_2413 NC_008228.1 2935548 2935745 R KEGG: bcl:ABC1618 hypothetical protein; hypothetical protein complement(2935548..2935745) Pseudoalteromonas atlantica T6c 4174162 YP_661984.1 CDS Patl_2414 NC_008228.1 2935998 2937230 R KEGG: cps:CPS_3313 putative lipoprotein; putative lipoprotein complement(2935998..2937230) Pseudoalteromonas atlantica T6c 4174163 YP_661985.1 CDS Patl_2415 NC_008228.1 2937424 2938278 R KEGG: tcx:Tcr_1155 nitrate transport ATP-binding subunits C and D; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: ATPase; nitrate ABC transporter ATPases C and D complement(2937424..2938278) Pseudoalteromonas atlantica T6c 4174164 YP_661986.1 CDS Patl_2416 NC_008228.1 2938361 2939350 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_06707 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; binding-protein-dependent transport system inner membrane protein complement(2938361..2939350) Pseudoalteromonas atlantica T6c 4174165 YP_661987.1 CDS Patl_2417 NC_008228.1 2939403 2940803 R KEGG: vpa:VPA1058 putative nitrate transport protein; putative nitrate transport protein complement(2939403..2940803) Pseudoalteromonas atlantica T6c 4174166 YP_661988.1 CDS Patl_2418 NC_008228.1 2941290 2943002 R PFAM: protein kinase protein phosphatase 2C-like; SMART: Serine/threonine protein kinase; KEGG: cps:CPS_4949 serine/threonine protein kinase; serine/threonine protein kinase complement(2941290..2943002) Pseudoalteromonas atlantica T6c 4174167 YP_661989.1 CDS Patl_2419 NC_008228.1 2943043 2944509 R PFAM: major facilitator superfamily MFS_1; KEGG: ppr:PBPRA2521 hypothetical nitrate transporter; major facilitator superfamily transporter complement(2943043..2944509) Pseudoalteromonas atlantica T6c 4174168 YP_661990.1 CDS Patl_2420 NC_008228.1 2945062 2946078 R KEGG: hch:HCH_01503 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; adenosine deaminase complement(2945062..2946078) Pseudoalteromonas atlantica T6c 4174169 YP_661991.1 CDS Patl_2421 NC_008228.1 2946668 2947999 D PFAM: Xanthine/uracil/vitamin C permease sulphate transporter; KEGG: mja:MJ0326 hypothetical protein; xanthine/uracil/vitamin C permease 2946668..2947999 Pseudoalteromonas atlantica T6c 4174170 YP_661992.1 CDS Patl_2422 NC_008228.1 2948154 2949059 R PFAM: polysaccharide deacetylase; KEGG: pae:PA1517 hypothetical protein; polysaccharide deacetylase complement(2948154..2949059) Pseudoalteromonas atlantica T6c 4174171 YP_661993.1 CDS Patl_2423 NC_008228.1 2949073 2949717 R PFAM: regulatory protein, TetR Tetracycline transcriptional regulator YcdC-like-like; KEGG: hch:HCH_01108 transcriptional regulator; TetR family transcriptional regulator complement(2949073..2949717) Pseudoalteromonas atlantica T6c 4174172 YP_661994.1 CDS Patl_2424 NC_008228.1 2950031 2951473 D PFAM: ferredoxin molybdopterin dehydrogenase, FAD-binding [2Fe-2S]-binding CO dehydrogenase flavoprotein-like; KEGG: ppr:PBPRA2243 putative xanthine dehydrogenase, XdhA subunit; molybdopterin dehydrogenase 2950031..2951473 Pseudoalteromonas atlantica T6c 4174173 YP_661995.1 CDS Patl_2425 NC_008228.1 2951572 2953926 D PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: cps:CPS_4865 xanthine dehydrogenase, molybdopterin binding subunit; xanthine dehydrogenase 2951572..2953926 Pseudoalteromonas atlantica T6c 4174174 YP_661996.1 CDS Patl_2426 NC_008228.1 2953928 2954857 D PFAM: protein of unknown function DUF182; KEGG: cps:CPS_4866 putative xanthine dehydrogenase accessory protein XdhC; hypothetical protein 2953928..2954857 Pseudoalteromonas atlantica T6c 4174175 YP_661997.1 CDS Patl_2427 NC_008228.1 2954944 2955363 D KEGG: hch:HCH_01094 hypothetical protein; hypothetical protein 2954944..2955363 Pseudoalteromonas atlantica T6c 4174176 YP_661998.1 CDS Patl_2428 NC_008228.1 2955356 2955688 D PFAM: Transthyretin; KEGG: sme:SMb21285 conserved hypothetical protein, transthyretin-like protein; transthyretin 2955356..2955688 Pseudoalteromonas atlantica T6c 4174177 YP_661999.1 CDS Patl_2429 NC_008228.1 2955705 2957000 D Catalyzes the deamination of guanine; guanine deaminase 2955705..2957000 Pseudoalteromonas atlantica T6c 4174178 YP_662000.1 CDS Patl_2430 NC_008228.1 2957041 2958255 D PFAM: protein of unknown function DUF989; KEGG: hch:HCH_01090 predicted membrane protein; hypothetical protein 2957041..2958255 Pseudoalteromonas atlantica T6c 4174179 YP_662001.1 CDS Patl_2431 NC_008228.1 2958476 2959096 R PFAM: Negative transcriptional regulator; KEGG: bha:BH0412 transcriptional repressor of sporulation and degradative enzymes production; negative transcriptional regulator complement(2958476..2959096) Pseudoalteromonas atlantica T6c 4174180 YP_662002.1 CDS Patl_2432 NC_008228.1 2959421 2959798 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ppr:PBPRB0453 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(2959421..2959798) Pseudoalteromonas atlantica T6c 4174181 YP_662003.1 CDS Patl_2433 NC_008228.1 2960019 2961023 R KEGG: rpb:RPB_3706 hypothetical protein; hypothetical protein complement(2960019..2961023) Pseudoalteromonas atlantica T6c 4174182 YP_662004.1 CDS Patl_2434 NC_008228.1 2961025 2962302 R PFAM: protein of unknown function DUF323; KEGG: rsp:RSP_3075 hypothetical protein; hypothetical protein complement(2961025..2962302) Pseudoalteromonas atlantica T6c 4174183 YP_662005.1 CDS Patl_2435 NC_008228.1 2962400 2963248 R PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase NmrA-like; KEGG: rba:RB4982 conserved hypothetical protein-putative oxidoreductase; 3-beta hydroxysteroid dehydrogenase/isomerase complement(2962400..2963248) Pseudoalteromonas atlantica T6c 4174184 YP_662006.1 CDS Patl_2436 NC_008228.1 2963432 2963677 R KEGG: dps:DP0735 hypothetical protein; hypothetical protein complement(2963432..2963677) Pseudoalteromonas atlantica T6c 4174185 YP_662007.1 CDS Patl_2437 NC_008228.1 2964028 2964276 R KEGG: vfi:VFA0619 hypothetical protein; hypothetical protein complement(2964028..2964276) Pseudoalteromonas atlantica T6c 4174186 YP_662008.1 CDS Patl_2438 NC_008228.1 2964439 2965815 R PFAM: helicase-like DEAD/DEAH box helicase-like; KEGG: dps:DP1413 similar to ATP-dependent RNA helicase; DEAD/DEAH box helicase complement(2964439..2965815) Pseudoalteromonas atlantica T6c 4174187 YP_662009.1 CDS Patl_2439 NC_008228.1 2965991 2966416 R KEGG: ppr:PBPRB1217 putative TonB2 protein; hypothetical protein complement(2965991..2966416) Pseudoalteromonas atlantica T6c 4174188 YP_662010.1 CDS Patl_2440 NC_008228.1 2966748 2967575 D hypothetical protein 2966748..2967575 Pseudoalteromonas atlantica T6c 4174189 YP_662011.1 CDS Patl_2441 NC_008228.1 2967634 2968848 D hypothetical protein 2967634..2968848 Pseudoalteromonas atlantica T6c 4174190 YP_662012.1 CDS Patl_2442 NC_008228.1 2968845 2970503 D KEGG: bja:bll1583 hypothetical protein; hypothetical protein 2968845..2970503 Pseudoalteromonas atlantica T6c 4174191 YP_662013.1 CDS Patl_2443 NC_008228.1 2970557 2971168 D KEGG: pha:PSHAa2889 secreted protein; secreted protein 2970557..2971168 Pseudoalteromonas atlantica T6c 4174192 YP_662014.1 CDS Patl_2444 NC_008228.1 2971923 2972333 D hypothetical protein 2971923..2972333 Pseudoalteromonas atlantica T6c 4174193 YP_662015.1 CDS Patl_2445 NC_008228.1 2972541 2974244 R PFAM: protein of unknown function UPF0061; KEGG: pmt:PMT1392 conserved hypotheical protein; hypothetical protein complement(2972541..2974244) Pseudoalteromonas atlantica T6c 4174194 YP_662016.1 CDS Patl_2446 NC_008228.1 2974682 2975146 R KEGG: vch:VCA0237 hypothetical protein; hypothetical protein complement(2974682..2975146) Pseudoalteromonas atlantica T6c 4174195 YP_662017.1 CDS Patl_2447 NC_008228.1 2975744 2976064 R hypothetical protein complement(2975744..2976064) Pseudoalteromonas atlantica T6c 4174196 YP_662018.1 CDS Patl_2448 NC_008228.1 2977132 2977704 R KEGG: pfl:PFL_3561 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(2977132..2977704) Pseudoalteromonas atlantica T6c 4174200 YP_662019.1 CDS uvrC NC_008228.1 2977774 2979600 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(2977774..2979600) Pseudoalteromonas atlantica T6c 4174201 YP_662020.1 CDS Patl_2450 NC_008228.1 2979604 2980248 R PFAM: regulatory protein, LuxR response regulator receiver; KEGG: vfi:VF1627 response regulator; two component LuxR family transcriptional regulator complement(2979604..2980248) Pseudoalteromonas atlantica T6c 4174202 YP_662021.1 CDS Patl_2451 NC_008228.1 2982284 2982952 D PFAM: protein of unknown function UPF0005; KEGG: cps:CPS_2350 putative membrane protein; hypothetical protein 2982284..2982952 Pseudoalteromonas atlantica T6c 4174205 YP_662022.1 CDS Patl_2452 NC_008228.1 2983028 2983417 D PFAM: DsrE-like protein; KEGG: plu:plu0426 putative uncharacterized protein involved in oxidation of intracellular sulfur; DsrE-like protein 2983028..2983417 Pseudoalteromonas atlantica T6c 4174206 YP_662023.1 CDS Patl_2453 NC_008228.1 2983420 2983776 D PFAM: DsrE-like protein; KEGG: ppr:PBPRA0311 putative uncharacterized protein involved in oxidation of intracellular sulfur; DsrE-like protein 2983420..2983776 Pseudoalteromonas atlantica T6c 4174207 YP_662024.1 CDS Patl_2454 NC_008228.1 2983777 2984091 D KEGG: pfl:PFL_3871 DsrH family protein; DsrH family protein 2983777..2984091 Pseudoalteromonas atlantica T6c 4174208 YP_662025.1 CDS Patl_2455 NC_008228.1 2984169 2984513 D PFAM: DsrC-like protein; KEGG: ppr:PBPRA2191 putative sulfite reductase; DsrC-like protein 2984169..2984513 Pseudoalteromonas atlantica T6c 4174209 YP_662026.1 CDS Patl_2456 NC_008228.1 2984605 2985903 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(2984605..2985903) Pseudoalteromonas atlantica T6c 4174210 YP_662027.1 CDS Patl_2457 NC_008228.1 2985914 2986297 R TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: cps:CPS_2756 CrcB protein; CrcB protein complement(2985914..2986297) Pseudoalteromonas atlantica T6c 4174211 YP_662028.1 CDS Patl_2458 NC_008228.1 2986298 2987635 R PFAM: AAA ATPase, central region; SMART: ATPase; KEGG: vfi:VF0907 ATPase, AAA family; recombination factor protein RarA complement(2986298..2987635) Pseudoalteromonas atlantica T6c 4174212 YP_662029.1 CDS Patl_2459 NC_008228.1 2987635 2988276 R PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: ilo:IL0666 outer membrane lipoprotein-sorting protein; outer membrane lipoprotein carrier protein LolA complement(2987635..2988276) Pseudoalteromonas atlantica T6c 4174213 YP_662030.1 CDS Patl_2460 NC_008228.1 2988301 2990814 R PFAM: cell divisionFtsK/SpoIIIE; KEGG: cps:CPS_2759 cell division protein FtsK; cell division protein FtsK complement(2988301..2990814) Pseudoalteromonas atlantica T6c 4174214 YP_662031.1 CDS Patl_2461 NC_008228.1 2990939 2991424 R mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator complement(2990939..2991424) Pseudoalteromonas atlantica T6c 4174215 YP_662032.1 CDS Patl_2462 NC_008228.1 2991575 2992705 D TIGRFAM: alanine dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase alanine dehydrogenase/PNT-like; KEGG: ilo:IL0669 alanine dehydrogenase; alanine dehydrogenase 2991575..2992705 Pseudoalteromonas atlantica T6c 4174216 YP_662033.1 CDS Patl_2463 NC_008228.1 2992813 2993508 R KEGG: vvu:VV12977 orotidine-5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase complement(2992813..2993508) Pseudoalteromonas atlantica T6c 4174217 YP_662034.1 CDS Patl_2464 NC_008228.1 2993515 2994684 R SMART: Tetratricopeptide region; KEGG: vfi:VF1756 tetratricopeptide repeat family protein; hypothetical protein complement(2993515..2994684) Pseudoalteromonas atlantica T6c 4174218 YP_662035.1 CDS ihfB NC_008228.1 2995156 2995446 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta complement(2995156..2995446) Pseudoalteromonas atlantica T6c 4174219 YP_662036.2 CDS rpsA NC_008228.1 2995517 2997190 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(2995517..2997190) Pseudoalteromonas atlantica T6c 4174220 YP_662037.1 CDS Patl_2467 NC_008228.1 2997314 2997991 R KEGG: cps:CPS_2334 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; cytidylate kinase complement(2997314..2997991) Pseudoalteromonas atlantica T6c 4174221 YP_662038.1 CDS Patl_2468 NC_008228.1 2998117 2999406 R TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: ppr:PBPRA2452 putative 3-phosphoshikimate 1-carboxyvinyltransferase; 3-phosphoshikimate 1-carboxyvinyltransferase complement(2998117..2999406) Pseudoalteromonas atlantica T6c 4174222 YP_662039.1 CDS Patl_2469 NC_008228.1 2999408 3000493 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(2999408..3000493) Pseudoalteromonas atlantica T6c 4174223 YP_662040.1 CDS Patl_2470 NC_008228.1 3000593 3003286 R TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A DNA gyrase C-terminal repeat, beta-propeller; KEGG: cps:CPS_2331 DNA gyrase, A subunit; DNA gyrase subunit A complement(3000593..3003286) Pseudoalteromonas atlantica T6c 4174224 YP_662041.1 CDS Patl_2471 NC_008228.1 3003525 3004286 D KEGG: eca:ECA1200 3-demethylubiquinone-9 3-methyltransferase; TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: Methyltransferase type 11 Methyltransferase type 12; ubiquinone biosynthesis O-methyltransferase 3003525..3004286 Pseudoalteromonas atlantica T6c 4174225 YP_662042.1 CDS Patl_2472 NC_008228.1 3004288 3004944 D KEGG: ilo:IL1362 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase HAD-superfamily hydrolase, subfamily IA, variant 3 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; phosphoglycolate phosphatase 3004288..3004944 Pseudoalteromonas atlantica T6c 4174226 YP_662043.1 CDS Patl_2473 NC_008228.1 3005327 3007642 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 3005327..3007642 Pseudoalteromonas atlantica T6c 4174227 YP_662044.1 CDS nrdB NC_008228.1 3007708 3008838 D B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 3007708..3008838 Pseudoalteromonas atlantica T6c 4174228 YP_662045.1 CDS Patl_2475 NC_008228.1 3008838 3009110 D PFAM: ferredoxin; KEGG: sgl:SG1586 hypothetical protein; ferredoxin 3008838..3009110 Pseudoalteromonas atlantica T6c 4174229 YP_662046.1 CDS Patl_2476 NC_008228.1 3009242 3010345 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase complement(3009242..3010345) Pseudoalteromonas atlantica T6c 4174230 YP_662047.1 CDS Patl_2477 NC_008228.1 3010424 3011530 R PFAM: NlpBDapX lipoprotein; KEGG: son:SO1880 lipoprotein-34 NlpB; NlpBDapX lipoprotein complement(3010424..3011530) Pseudoalteromonas atlantica T6c 4174231 YP_662048.1 CDS Patl_2478 NC_008228.1 3011540 3012421 R TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: msu:MS0265 dihydrodipicolinate synthase/N-acetylneuraminate lyase; dihydrodipicolinate synthase complement(3011540..3012421) Pseudoalteromonas atlantica T6c 4174232 YP_662049.1 CDS Patl_2479 NC_008228.1 3012583 3013110 D KEGG: cps:CPS_3185 glycine cleavage system transcriptional repressor; glycine cleavage system transcriptional repressor 3012583..3013110 Pseudoalteromonas atlantica T6c 4174233 YP_662050.1 CDS bcp NC_008228.1 3013167 3013631 D bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 3013167..3013631 Pseudoalteromonas atlantica T6c 4174234 YP_662051.1 CDS Patl_2481 NC_008228.1 3013697 3014767 R PFAM: protein of unknown function UPF0118; KEGG: vfi:VF1921 transporter; hypothetical protein complement(3013697..3014767) Pseudoalteromonas atlantica T6c 4174235 YP_662052.1 CDS Patl_2482 NC_008228.1 3015105 3016571 D PFAM: peptidase M48, Ste24p; KEGG: cps:CPS_3190 hypothetical protein; peptidase M48, Ste24p 3015105..3016571 Pseudoalteromonas atlantica T6c 4174236 YP_662053.1 CDS Patl_2483 NC_008228.1 3016557 3017027 R PFAM: Redoxin; KEGG: ilo:IL1464 thioredoxin related protein; redoxin complement(3016557..3017027) Pseudoalteromonas atlantica T6c 4174237 YP_662054.1 CDS Patl_2484 NC_008228.1 3017106 3017477 D TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: hch:HCH_01858 arsenate reductase; arsenate reductase 3017106..3017477 Pseudoalteromonas atlantica T6c 4174238 YP_662055.1 CDS Patl_2485 NC_008228.1 3017474 3018070 D PFAM: flavodoxin/nitric oxide synthase; KEGG: rso:RSc1558 probable TRP repressor binding protein; flavodoxin/nitric oxide synthase 3017474..3018070 Pseudoalteromonas atlantica T6c 4174239 YP_662056.1 CDS Patl_2486 NC_008228.1 3018092 3018520 D KEGG: vfi:VF1924 hypothetical protein; hypothetical protein 3018092..3018520 Pseudoalteromonas atlantica T6c 4174240 YP_662057.1 CDS Patl_2487 NC_008228.1 3018517 3019230 R PFAM: Chromosomal replication initiator, DnaA; KEGG: pmu:PM0017 hypothetical HI1225; chromosomal replication initiator DnaA complement(3018517..3019230) Pseudoalteromonas atlantica T6c 4174241 YP_662058.1 CDS Patl_2488 NC_008228.1 3019230 3020342 R KEGG: pha:PSHAa1906 hypothetical protein; hypothetical protein complement(3019230..3020342) Pseudoalteromonas atlantica T6c 4174242 YP_662059.1 CDS Patl_2489 NC_008228.1 3020529 3021566 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 3020529..3021566 Pseudoalteromonas atlantica T6c 4174243 YP_662060.1 CDS Patl_2490 NC_008228.1 3021566 3022222 D TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase-like; KEGG: cps:CPS_3197 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase 3021566..3022222 Pseudoalteromonas atlantica T6c 4174244 YP_662061.1 CDS Patl_2491 NC_008228.1 3022236 3022907 D KEGG: pha:PSHAa1949 hypothetical protein; hypothetical protein 3022236..3022907 Pseudoalteromonas atlantica T6c 4174245 YP_662062.1 CDS fadE NC_008228.1 3023111 3025576 D functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 3023111..3025576 Pseudoalteromonas atlantica T6c 4174246 YP_662063.1 CDS ihfA NC_008228.1 3025779 3026075 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha complement(3025779..3026075) Pseudoalteromonas atlantica T6c 4174247 YP_662064.1 CDS pheT NC_008228.1 3026081 3028468 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(3026081..3028468) Pseudoalteromonas atlantica T6c 4174248 YP_662065.1 CDS pheS NC_008228.1 3028481 3029461 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(3028481..3029461) Pseudoalteromonas atlantica T6c 4174249 YP_662066.1 CDS rplT NC_008228.1 3029759 3030115 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(3029759..3030115) Pseudoalteromonas atlantica T6c 4174250 YP_662067.1 CDS rpmI NC_008228.1 3030131 3030328 R PFAM: ribosomal protein L35; KEGG: tcx:Tcr_1665 ribosomal protein L35; 50S ribosomal protein L35 complement(3030131..3030328) Pseudoalteromonas atlantica T6c 4174251 YP_662068.1 CDS Patl_2498 NC_008228.1 3030446 3030910 R TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: ilo:IL1398 translation initiation factor 3; translation initiation factor IF-3 complement(3030446..3030910) Pseudoalteromonas atlantica T6c 4174252 YP_662069.1 CDS Patl_2499 NC_008228.1 3031009 3032925 R catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase complement(3031009..3032925) Pseudoalteromonas atlantica T6c 4174253 YP_662070.1 CDS Patl_2500 NC_008228.1 3033089 3033736 D KEGG: vvy:VVA0553 hypothetical protein; hypothetical protein 3033089..3033736 Pseudoalteromonas atlantica T6c 4174254 YP_662071.1 CDS Patl_2501 NC_008228.1 3033865 3034608 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mca:MCA2986 pteridine reductase; short-chain dehydrogenase/reductase SDR 3033865..3034608 Pseudoalteromonas atlantica T6c 4174255 YP_662072.1 CDS Patl_2502 NC_008228.1 3034618 3035658 D KEGG: ppr:PBPRA1486 conserved hypothetical protein; hypothetical protein 3034618..3035658 Pseudoalteromonas atlantica T6c 4174256 YP_662073.1 CDS Patl_2503 NC_008228.1 3035655 3036410 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(3035655..3036410) Pseudoalteromonas atlantica T6c 4174257 YP_662074.1 CDS Patl_2504 NC_008228.1 3036427 3038313 R PFAM: cyclic nucleotide-binding CBS domain containing protein protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: ilo:IL1419 signal-transduction protein; cyclic nucleotide-binding protein complement(3036427..3038313) Pseudoalteromonas atlantica T6c 4174258 YP_662075.1 CDS Patl_2505 NC_008228.1 3038444 3040069 R TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: ilo:IL1418 choline-glycine betaine transporter; choline/carnitine/betaine transporter complement(3038444..3040069) Pseudoalteromonas atlantica T6c 4174259 YP_662076.1 CDS Patl_2506 NC_008228.1 3040226 3041578 R KEGG: pha:PSHAa2968 hypothetical protein; hypothetical protein complement(3040226..3041578) Pseudoalteromonas atlantica T6c 4174260 YP_662077.1 CDS Patl_2507 NC_008228.1 3042922 3043971 D KEGG: pha:PSHAb0546 hypothetical protein; hypothetical protein 3042922..3043971 Pseudoalteromonas atlantica T6c 4174262 YP_662078.1 CDS Patl_2508 NC_008228.1 3044463 3044846 D KEGG: son:SO2239 hypothetical protein; hypothetical protein 3044463..3044846 Pseudoalteromonas atlantica T6c 4174263 YP_662079.1 CDS Patl_2509 NC_008228.1 3044851 3045351 D PFAM: sugar-specific permease, EIIA 1 domain; KEGG: msu:MS1508 phosphotransferase system IIA components; sugar-specific permease EIIA 3044851..3045351 Pseudoalteromonas atlantica T6c 4174264 YP_662080.1 CDS Patl_2510 NC_008228.1 3045359 3047614 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: cps:CPS_0277 isoquinoline 1-oxidoreductase, beta subunit; twin-arginine translocation pathway signal protein complement(3045359..3047614) Pseudoalteromonas atlantica T6c 4174265 YP_662081.1 CDS Patl_2511 NC_008228.1 3047611 3048111 R PFAM: ferredoxin [2Fe-2S]-binding; KEGG: ccr:CC0022 isoquinoline 1-oxidoreductase, alpha subunit; (2Fe-2S)-binding protein complement(3047611..3048111) Pseudoalteromonas atlantica T6c 4174266 YP_662082.1 CDS Patl_2512 NC_008228.1 3048142 3048807 R KEGG: cps:CPS_0279 conserved hypothetical protein; hypothetical protein complement(3048142..3048807) Pseudoalteromonas atlantica T6c 4174267 YP_662083.1 CDS Patl_2513 NC_008228.1 3048804 3049850 R PFAM: protein of unknown function DUF182; KEGG: cps:CPS_0280 putative xanthine dehydrogenase accessory factor; hypothetical protein complement(3048804..3049850) Pseudoalteromonas atlantica T6c 4174268 YP_662084.1 CDS Patl_2514 NC_008228.1 3049855 3051216 R PFAM: RDD domain containing protein; KEGG: son:SO2902 hypothetical protein; RDD domain-containing protein complement(3049855..3051216) Pseudoalteromonas atlantica T6c 4174269 YP_662085.1 CDS Patl_2515 NC_008228.1 3051230 3052408 R KEGG: cps:CPS_3297 hypothetical protein; hypothetical protein complement(3051230..3052408) Pseudoalteromonas atlantica T6c 4174270 YP_662086.1 CDS Patl_2516 NC_008228.1 3052408 3053244 R PFAM: AAA ATPase, central region ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: cps:CPS_3298 hypothetical protein; ATPase complement(3052408..3053244) Pseudoalteromonas atlantica T6c 4174271 YP_662087.1 CDS Patl_2517 NC_008228.1 3053657 3054622 D TIGRFAM: cysteine synthases cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: son:SO2903 cysteine synthase A; cysteine synthase A 3053657..3054622 Pseudoalteromonas atlantica T6c 4174272 YP_662088.1 CDS Patl_2518 NC_008228.1 3054749 3055201 D KEGG: cps:CPS_2250 putative lipoprotein; putative lipoprotein 3054749..3055201 Pseudoalteromonas atlantica T6c 4174273 YP_662089.1 CDS Patl_2519 NC_008228.1 3055302 3056471 D PFAM: protein of unknown function DUF1006; KEGG: son:SO4332 hypothetical protein; hypothetical protein 3055302..3056471 Pseudoalteromonas atlantica T6c 4174274 YP_662090.1 CDS Patl_2520 NC_008228.1 3056508 3056876 D KEGG: hch:HCH_03108 hypothetical protein; hypothetical protein 3056508..3056876 Pseudoalteromonas atlantica T6c 4174275 YP_662091.1 CDS Patl_2521 NC_008228.1 3056904 3057335 R PFAM: CBS domain containing protein; KEGG: cps:CPS_4877 putative acetoin utilization protein AcuB; signal transduction protein complement(3056904..3057335) Pseudoalteromonas atlantica T6c 4174276 YP_662092.1 CDS Patl_2522 NC_008228.1 3057722 3058309 D KEGG: cps:CPS_2148 membrane protein, Rhomboid family; rhomboid family membrane protein 3057722..3058309 Pseudoalteromonas atlantica T6c 4174277 YP_662093.1 CDS Patl_2523 NC_008228.1 3058374 3058805 D PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: ava:Ava_B0058 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 3058374..3058805 Pseudoalteromonas atlantica T6c 4174278 YP_662094.1 CDS Patl_2524 NC_008228.1 3058933 3059505 R Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; elongation factor P complement(3058933..3059505) Pseudoalteromonas atlantica T6c 4174279 YP_662095.1 CDS Patl_2525 NC_008228.1 3059716 3062268 R PFAM: peptidase S9, prolyl oligopeptidase active site region peptidase S9B, dipeptidylpeptidase IV-like; KEGG: pha:PSHAa1568 enzymatic protein; peptidase S9, prolyl oligopeptidase active site region complement(3059716..3062268) Pseudoalteromonas atlantica T6c 4174280 YP_662096.1 CDS Patl_2526 NC_008228.1 3062452 3062994 D PFAM: glutathione peroxidase; KEGG: reu:Reut_A0042 glutathione peroxidase; glutathione peroxidase 3062452..3062994 Pseudoalteromonas atlantica T6c 4174281 YP_662097.1 CDS Patl_2527 NC_008228.1 3063055 3063663 R PFAM: NAD(P)H dehydrogenase (quinone) NADPH-dependent FMN reductase; KEGG: bur:Bcep18194_A3615 (acyl-carrier protein) phosphodiesterase; (acyl-carrier protein) phosphodiesterase complement(3063055..3063663) Pseudoalteromonas atlantica T6c 4174282 YP_662098.1 CDS Patl_2528 NC_008228.1 3063765 3064877 R KEGG: mca:MCA0589 nitrate transporter, putative; nitrate transporter complement(3063765..3064877) Pseudoalteromonas atlantica T6c 4174283 YP_662099.1 CDS Patl_2529 NC_008228.1 3064870 3065508 R PFAM: response regulator receiver ANTAR; KEGG: mlo:mlr2855 two-component response regulator; response regulator receiver/ANTAR domain-containing protein complement(3064870..3065508) Pseudoalteromonas atlantica T6c 4174284 YP_662100.1 CDS Patl_2530 NC_008228.1 3065943 3067028 R PFAM: glycosyl transferase, family 3; KEGG: pfo:Pfl_3579 glycosyl transferase, family 3; hypothetical protein complement(3065943..3067028) Pseudoalteromonas atlantica T6c 4174285 YP_662101.1 CDS Patl_2531 NC_008228.1 3067192 3068220 R TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pae:PA2611 uroporphyrin-III C-methyltransferase / precorrin-2 oxidase / ferrochelatase; uroporphyrin-III C-methyltransferase complement(3067192..3068220) Pseudoalteromonas atlantica T6c 4174286 YP_662102.1 CDS Patl_2532 NC_008228.1 3068217 3071120 R PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region molybdopterin oxidoreductase Fe4S4 region BFD-like [2Fe-2S]-binding region; KEGG: cps:CPS_4945 nitrate reductase; molybdopterin oxidoreductase complement(3068217..3071120) Pseudoalteromonas atlantica T6c 4174287 YP_662103.1 CDS Patl_2533 NC_008228.1 3071170 3071514 R TIGRFAM: nitrite reductase [NAD(P)H], small subunit; KEGG: cps:CPS_4946 nitrite reductase [NAD(P)H], small subunit; nitrite reductase (NAD(P)H) small subunit complement(3071170..3071514) Pseudoalteromonas atlantica T6c 4174288 YP_662104.1 CDS Patl_2534 NC_008228.1 3071525 3074110 R TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like nitrite and sulphite reductase 4Fe-4S region BFD-like [2Fe-2S]-binding region; KEGG: cps:CPS_4947 nitrite reductase [NAD(P)H], large subunit; nitrite reductase (NAD(P)H) large subunit complement(3071525..3074110) Pseudoalteromonas atlantica T6c 4174289 YP_662105.1 CDS Patl_2535 NC_008228.1 3074687 3075568 D PFAM: GumN; KEGG: cps:CPS_4737 hypothetical protein; GumN protein 3074687..3075568 Pseudoalteromonas atlantica T6c 4174290 YP_662106.1 CDS Patl_2536 NC_008228.1 3075604 3076374 D PFAM: UBA/THIF-type NAD/FAD binding fold MoeZ/MoeB; KEGG: vfi:VF1609 molybdopterin biosynthesis MoeB protein; UBA/THIF-type NAD/FAD binding domain-containing protein 3075604..3076374 Pseudoalteromonas atlantica T6c 4174291 YP_662107.1 CDS Patl_2537 NC_008228.1 3076514 3077761 D TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain MoeA-like, domain I and II MoeA-like, domain IV; KEGG: vpa:VPA1170 molybdopterin biosynthesis MoeA protein; molybdenum cofactor synthesis domain-containing protein 3076514..3077761 Pseudoalteromonas atlantica T6c 4174292 YP_662108.1 CDS Patl_2538 NC_008228.1 3077762 3079126 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cps:CPS_2915 multidrug resistance protein NorM; MATE efflux family protein 3077762..3079126 Pseudoalteromonas atlantica T6c 4174293 YP_662109.1 CDS Patl_2539 NC_008228.1 3079273 3080610 D PFAM: beta-lactamase; KEGG: vfi:VF0968 beta-lactamase family protein; serine-type D-Ala-D-Ala carboxypeptidase 3079273..3080610 Pseudoalteromonas atlantica T6c 4174294 YP_662110.1 CDS Patl_2540 NC_008228.1 3080657 3081454 R SMART: extracellular solute-binding protein, family 3; KEGG: dvu:DVU0852 extracellular solute-binding protein, putative; extracellular solute-binding protein complement(3080657..3081454) Pseudoalteromonas atlantica T6c 4174295 YP_662111.1 CDS Patl_2541 NC_008228.1 3081735 3083252 R PFAM: Xanthine/uracil/vitamin C permease; KEGG: pha:PSHAb0023 hypothetical protein; xanthine/uracil/vitamin C permease complement(3081735..3083252) Pseudoalteromonas atlantica T6c 4174296 YP_662112.1 CDS Patl_2542 NC_008228.1 3083417 3084037 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: vpa:VP1862 putative threonine efflux protein; lysine exporter protein LysE/YggA 3083417..3084037 Pseudoalteromonas atlantica T6c 4174297 YP_662113.1 CDS Patl_2543 NC_008228.1 3084125 3084508 R KEGG: pae:PA3502 hypothetical protein; hypothetical protein complement(3084125..3084508) Pseudoalteromonas atlantica T6c 4174298 YP_662114.1 CDS Patl_2544 NC_008228.1 3084705 3086423 D PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: dar:Daro_4086 response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal; periplasmic sensor hybrid histidine kinase 3084705..3086423 Pseudoalteromonas atlantica T6c 4174299 YP_662115.1 CDS Patl_2545 NC_008228.1 3086533 3087249 R PFAM: SapC; KEGG: cps:CPS_0240 hypothetical protein; protein SapC protein complement(3086533..3087249) Pseudoalteromonas atlantica T6c 4174300 YP_662116.1 CDS Patl_2546 NC_008228.1 3087311 3088864 R PFAM: tryptophan halogenase; KEGG: cps:CPS_0239 putative tryptophan halogenase; tryptophan halogenase complement(3087311..3088864) Pseudoalteromonas atlantica T6c 4174301 YP_662117.1 CDS Patl_2547 NC_008228.1 3089048 3091822 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3737 TonB-dependent receptor; TonB-dependent receptor complement(3089048..3091822) Pseudoalteromonas atlantica T6c 4174302 YP_662118.1 CDS Patl_2548 NC_008228.1 3092215 3092316 D hypothetical protein 3092215..3092316 Pseudoalteromonas atlantica T6c 4174303 YP_662119.1 CDS Patl_2549 NC_008228.1 3092399 3093010 R PFAM: regulatory protein GntR, HTH GntR-like; KEGG: bld:BLi01972 hypothetical protein; GntR family transcriptional regulator complement(3092399..3093010) Pseudoalteromonas atlantica T6c 4174304 YP_662120.1 CDS Patl_2550 NC_008228.1 3093175 3094311 D PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: sco:SCO3480 putative racemase; mandelate racemase/muconate lactonizing-like protein 3093175..3094311 Pseudoalteromonas atlantica T6c 4174305 YP_662121.1 CDS Patl_2551 NC_008228.1 3094321 3095346 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: nfa:nfa30750 putative dehydrogenase; alcohol dehydrogenase GroES-like protein 3094321..3095346 Pseudoalteromonas atlantica T6c 4174306 YP_662122.1 CDS Patl_2552 NC_008228.1 3095373 3096137 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bld:BLi03830 2-keto-3-deoxygluconate oxidoreductase; RBL02950; short-chain dehydrogenase/reductase SDR 3095373..3096137 Pseudoalteromonas atlantica T6c 4174307 YP_662123.1 CDS Patl_2553 NC_008228.1 3096143 3097606 D PFAM: aldehyde dehydrogenase; KEGG: gox:GOX1712 aldehyde dehydrogenase; betaine aldehyde dehydrogenase 3096143..3097606 Pseudoalteromonas atlantica T6c 4174308 YP_662124.1 CDS Patl_2554 NC_008228.1 3097836 3098699 R TIGRFAM: dethiobiotin synthase; KEGG: pfl:PFL_5689 dethiobiotin synthetase; dethiobiotin synthase complement(3097836..3098699) Pseudoalteromonas atlantica T6c 4174309 YP_662125.1 CDS Patl_2555 NC_008228.1 3098767 3099714 R PFAM: UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: psb:Psyr_4684 biotin synthesis protein BioC; type 11 methyltransferase complement(3098767..3099714) Pseudoalteromonas atlantica T6c 4174310 YP_662126.1 CDS Patl_2556 NC_008228.1 3099728 3100960 R PFAM: aminotransferase, class I and II aminotransferase class-III; KEGG: pfo:Pfl_5175 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase complement(3099728..3100960) Pseudoalteromonas atlantica T6c 4174311 YP_662127.1 CDS Patl_2557 NC_008228.1 3100960 3102069 R KEGG: vpa:VP1113 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase complement(3100960..3102069) Pseudoalteromonas atlantica T6c 4174312 YP_662128.1 CDS Patl_2558 NC_008228.1 3102168 3103448 D TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: stt:t2094 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 3102168..3103448 Pseudoalteromonas atlantica T6c 4174313 YP_662129.1 CDS Patl_2559 NC_008228.1 3103496 3104410 R KEGG: ppr:PBPRA2842 hypothetical protein; hypothetical protein complement(3103496..3104410) Pseudoalteromonas atlantica T6c 4174314 YP_662130.1 CDS Patl_2560 NC_008228.1 3104709 3105086 R PFAM: Invasion gene expression up-regulator, SirB; KEGG: son:SO3830 hypothetical protein; invasion gene expression up-regulator SirB complement(3104709..3105086) Pseudoalteromonas atlantica T6c 4174315 YP_662131.1 CDS Patl_2561 NC_008228.1 3105172 3106725 R PFAM: response regulator receiver metal-dependent phosphohydrolase, HD subdomain; KEGG: dde:Dde_3114 metal dependent phosphohydrolase; response regulator receiver modulated metal dependent phosphohydrolase complement(3105172..3106725) Pseudoalteromonas atlantica T6c 4174316 YP_662132.1 CDS Patl_2562 NC_008228.1 3106831 3107727 R TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: cps:CPS_3551 modification methylase, HemK family; HemK family modification methylase complement(3106831..3107727) Pseudoalteromonas atlantica T6c 4174317 YP_662133.1 CDS prfA NC_008228.1 3107733 3108821 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(3107733..3108821) Pseudoalteromonas atlantica T6c 4174318 YP_662134.1 CDS Patl_2564 NC_008228.1 3108923 3110194 R PFAM: glutamyl-tRNA reductase Shikimate/quinate 5-dehydrogenase; KEGG: son:SO3834 glutamyl-tRNA reductase; shikimate/quinate 5-dehydrogenase complement(3108923..3110194) Pseudoalteromonas atlantica T6c 4174319 YP_662135.1 CDS Patl_2565 NC_008228.1 3110284 3110940 D PFAM: outer membrane lipoprotein LolB; KEGG: son:SO3835 outer membrane lipoprotein LolB; outer membrane lipoprotein LolB 3110284..3110940 Pseudoalteromonas atlantica T6c 4174320 YP_662136.1 CDS ipk NC_008228.1 3110925 3111785 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 3110925..3111785 Pseudoalteromonas atlantica T6c 4174321 YP_662137.1 CDS Patl_2567 NC_008228.1 3111946 3112893 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 3111946..3112893 Pseudoalteromonas atlantica T6c 4174323 YP_662138.1 CDS Patl_2568 NC_008228.1 3113044 3114120 D PFAM: MscS Mechanosensitive ion channel; KEGG: gsu:GSU2357 hypothetical protein; mechanosensitive ion channel protein MscS 3113044..3114120 Pseudoalteromonas atlantica T6c 4174324 YP_662139.1 CDS Patl_2569 NC_008228.1 3114367 3115008 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 3114367..3115008 Pseudoalteromonas atlantica T6c 4174325 YP_662140.1 CDS Patl_2570 NC_008228.1 3115014 3115598 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 3115014..3115598 Pseudoalteromonas atlantica T6c 4174326 YP_662141.1 CDS Patl_2571 NC_008228.1 3115643 3116734 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 3115643..3116734 Pseudoalteromonas atlantica T6c 4174327 YP_662142.1 CDS Patl_2572 NC_008228.1 3117012 3118256 D PFAM: extracellular solute-binding protein, family 1; KEGG: hch:HCH_00071 ABC-type sugar transport system, periplasmic component; extracellular solute-binding protein 3117012..3118256 Pseudoalteromonas atlantica T6c 4174328 YP_662143.1 CDS Patl_2573 NC_008228.1 3118449 3118892 D KEGG: xcv:XCV0135 hypothetical protein; hypothetical protein 3118449..3118892 Pseudoalteromonas atlantica T6c 4174329 YP_662144.1 CDS Patl_2575 NC_008228.1 3120677 3122092 D TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: pha:PSHAb0545 putative amino acid permease; amino acid carrier protein 3120677..3122092 Pseudoalteromonas atlantica T6c 4174335 YP_662145.1 CDS Patl_2576 NC_008228.1 3122222 3122791 R PFAM: NAD(P)H dehydrogenase (quinone) NADPH-dependent FMN reductase; KEGG: pcu:pc0973 hypothetical protein; NADPH-dependent FMN reductase complement(3122222..3122791) Pseudoalteromonas atlantica T6c 4174336 YP_662146.1 CDS Patl_2577 NC_008228.1 3123109 3125001 R PFAM: protein of unknown function DUF885; KEGG: cps:CPS_3202 putative lipoprotein; hypothetical protein complement(3123109..3125001) Pseudoalteromonas atlantica T6c 4174337 YP_662147.1 CDS Patl_2578 NC_008228.1 3125056 3126201 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: vfi:VF0760 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase complement(3125056..3126201) Pseudoalteromonas atlantica T6c 4174338 YP_662148.1 CDS Patl_2579 NC_008228.1 3126506 3128149 D PFAM: TPR repeat response regulator receiver Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ilo:IL0829 response regulator with TPR repeat; response regulator receiver protein 3126506..3128149 Pseudoalteromonas atlantica T6c 4174339 YP_662149.1 CDS Patl_2580 NC_008228.1 3128146 3128430 D hypothetical protein 3128146..3128430 Pseudoalteromonas atlantica T6c 4174340 YP_662150.1 CDS Patl_2581 NC_008228.1 3128554 3130200 R KEGG: hch:HCH_00494 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein histidine kinase, HAMP region PAS fold-4; SMART: PAS; PAS/PAC sensor-containing diguanylate cyclase complement(3128554..3130200) Pseudoalteromonas atlantica T6c 4174341 YP_662151.1 CDS Patl_2582 NC_008228.1 3130197 3130643 R KEGG: eba:ebB54 hypothetical protein; hypothetical protein complement(3130197..3130643) Pseudoalteromonas atlantica T6c 4174342 YP_662152.1 CDS Patl_2583 NC_008228.1 3130640 3131938 R KEGG: vch:VC2456 hypothetical protein; hypothetical protein complement(3130640..3131938) Pseudoalteromonas atlantica T6c 4174343 YP_662153.1 CDS Patl_2584 NC_008228.1 3132500 3134833 R KEGG: hma:rrnAC3030 hypothetical protein; hypothetical protein complement(3132500..3134833) Pseudoalteromonas atlantica T6c 4174344 YP_662154.1 CDS Patl_2585 NC_008228.1 3135083 3137455 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_4420 TonB-dependent receptor; TonB-dependent receptor complement(3135083..3137455) Pseudoalteromonas atlantica T6c 4174345 YP_662155.1 CDS Patl_2586 NC_008228.1 3137547 3138764 R KEGG: pha:PSHAb0417 putative quaternary ammonium permease; putative quaternary ammonium permease complement(3137547..3138764) Pseudoalteromonas atlantica T6c 4174346 YP_662156.1 CDS Patl_2587 NC_008228.1 3138869 3140539 R catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase complement(3138869..3140539) Pseudoalteromonas atlantica T6c 4174347 YP_662157.1 CDS Patl_2588 NC_008228.1 3140539 3142014 R catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase complement(3140539..3142014) Pseudoalteromonas atlantica T6c 4174348 YP_662158.1 CDS Patl_2589 NC_008228.1 3142004 3142594 R HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI complement(3142004..3142594) Pseudoalteromonas atlantica T6c 4174349 YP_662159.1 CDS Patl_2590 NC_008228.1 3143163 3144359 D TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: son:SO2915 acetate kinase; acetate kinase 3143163..3144359 Pseudoalteromonas atlantica T6c 4174350 YP_662160.1 CDS Patl_2591 NC_008228.1 3144369 3146513 D KEGG: eca:ECA3040 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase DRTGG; phosphate acetyltransferase 3144369..3146513 Pseudoalteromonas atlantica T6c 4174351 YP_662161.1 CDS Patl_2592 NC_008228.1 3146680 3147651 R PFAM: phosphofructokinase; KEGG: sru:SRU_0825 6-phosphofructokinase; 6-phosphofructokinase complement(3146680..3147651) Pseudoalteromonas atlantica T6c 4174352 YP_662162.1 CDS Patl_2593 NC_008228.1 3147691 3148374 R KEGG: ath:At1g22170 phosphoglycerate/bisphosphoglycerate mutase family protein; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase; phosphoglycerate mutase complement(3147691..3148374) Pseudoalteromonas atlantica T6c 4174353 YP_662163.1 CDS Patl_2594 NC_008228.1 3149083 3151521 D TIGRFAM: phosphoenolpyruvate synthase; PFAM: PEP-utilizing enzyme pyruvate phosphate dikinase, PEP/pyruvate-binding PEP-utilising enzyme, mobile region; KEGG: mac:MA2667 pyruvate water dikinase; phosphoenolpyruvate synthase 3149083..3151521 Pseudoalteromonas atlantica T6c 4174354 YP_662164.1 CDS Patl_2595 NC_008228.1 3151913 3153547 D PFAM: Cl- channel, voltage gated; KEGG: pca:Pcar_1620 putative chloride channel; VWA containing CoxE-like protein 3151913..3153547 Pseudoalteromonas atlantica T6c 4174355 YP_662165.1 CDS Patl_2596 NC_008228.1 3153601 3154614 R KEGG: bte:BTH_I1196 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I complement(3153601..3154614) Pseudoalteromonas atlantica T6c 4174356 YP_662166.1 CDS Patl_2597 NC_008228.1 3155331 3155552 D KEGG: pha:PSHAa1766 hypothetical protein; hypothetical protein 3155331..3155552 Pseudoalteromonas atlantica T6c 4174357 YP_662167.1 CDS Patl_2598 NC_008228.1 3155628 3156836 R PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase; transposase, IS4 complement(3155628..3156836) Pseudoalteromonas atlantica T6c 4174358 YP_662168.1 CDS Patl_2599 NC_008228.1 3157083 3161396 R PFAM: SNF2-related helicase-like; SMART: DEAD/DEAH box helicase-like; KEGG: dps:DP0995 helicase; hypothetical protein complement(3157083..3161396) Pseudoalteromonas atlantica T6c 4174359 YP_662169.1 CDS Patl_2600 NC_008228.1 3161674 3162447 R KEGG: pha:PSHAa2454 hypothetical protein; membrane protein; hypothetical protein complement(3161674..3162447) Pseudoalteromonas atlantica T6c 4174360 YP_662170.1 CDS Patl_2601 NC_008228.1 3162875 3163339 D PFAM: ferredoxin [2Fe-2S]-binding; KEGG: mlo:mll3837 isoquinoline 1-oxidoreductase, alpha subunit; (2Fe-2S)-binding protein 3162875..3163339 Pseudoalteromonas atlantica T6c 4174361 YP_662171.1 CDS Patl_2602 NC_008228.1 3163336 3165585 D PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: mlo:mll3836 aldehyde dehydrogenase; aldehyde oxidase and xanthine dehydrogenase 3163336..3165585 Pseudoalteromonas atlantica T6c 4174362 YP_662172.1 CDS Patl_2603 NC_008228.1 3165596 3166216 D KEGG: mlo:mll3835 hypothetical protein; hypothetical protein 3165596..3166216 Pseudoalteromonas atlantica T6c 4174363 YP_662173.1 CDS Patl_2604 NC_008228.1 3166306 3168426 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_4488 TonB-dependent receptor; TonB-dependent receptor complement(3166306..3168426) Pseudoalteromonas atlantica T6c 4174364 YP_662174.1 CDS Patl_2605 NC_008228.1 3168502 3168813 R hypothetical protein complement(3168502..3168813) Pseudoalteromonas atlantica T6c 4174365 YP_662175.1 CDS Patl_2606 NC_008228.1 3169218 3169778 R hypothetical protein complement(3169218..3169778) Pseudoalteromonas atlantica T6c 4174366 YP_662176.1 CDS Patl_2607 NC_008228.1 3169916 3171370 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: protein of unknown function DUF839; KEGG: rba:RB8885 conserved hypothetical protein-putative phosphatase; twin-arginine translocation pathway signal protein complement(3169916..3171370) Pseudoalteromonas atlantica T6c 4174367 YP_662177.1 CDS Patl_2608 NC_008228.1 3171554 3172345 R TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: pub:SAR11_0977 sec-independent protein translocase protein TatC; Sec-independent protein translocase subunit TatC complement(3171554..3172345) Pseudoalteromonas atlantica T6c 4174368 YP_662178.1 CDS Patl_2609 NC_008228.1 3172342 3172770 R KEGG: bpa:BPP4277 Sec-independent protein translocase protein; hypothetical protein complement(3172342..3172770) Pseudoalteromonas atlantica T6c 4174369 YP_662179.1 CDS Patl_2610 NC_008228.1 3172824 3173105 R TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: mlo:msl1085 sec-independent protein translocase protein tatA/E; twin arginine-targeting protein translocase complement(3172824..3173105) Pseudoalteromonas atlantica T6c 4174370 YP_662180.1 CDS Patl_2611 NC_008228.1 3173290 3173835 D hypothetical protein 3173290..3173835 Pseudoalteromonas atlantica T6c 4174371 YP_662181.1 CDS Patl_2612 NC_008228.1 3173898 3174239 D KEGG: ppr:PBPRA0236 putative 5-carboxymethyl-2-hydroxymuconate delta isomerase; putative 5-carboxymethyl-2-hydroxymuconate delta isomerase 3173898..3174239 Pseudoalteromonas atlantica T6c 4174372 YP_662182.1 CDS Patl_2613 NC_008228.1 3174839 3176086 D PFAM: Patatin; KEGG: pha:PSHAb0541 putative hydrolase similar to YjjU; patatin 3174839..3176086 Pseudoalteromonas atlantica T6c 4174373 YP_662183.1 CDS Patl_2614 NC_008228.1 3176455 3177342 R hypothetical protein complement(3176455..3177342) Pseudoalteromonas atlantica T6c 4174374 YP_662184.1 CDS Patl_2615 NC_008228.1 3177867 3178376 R KEGG: nar:Saro_2352 hypothetical protein; hypothetical protein complement(3177867..3178376) Pseudoalteromonas atlantica T6c 4174375 YP_662185.1 CDS Patl_2616 NC_008228.1 3178609 3179670 R PFAM: beta-lactamase; KEGG: sha:SH0620 hypothetical protein; beta-lactamase complement(3178609..3179670) Pseudoalteromonas atlantica T6c 4174376 YP_662186.1 CDS Patl_2617 NC_008228.1 3180605 3181474 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: pha:PSHAb0256 transporter involved in threonine and homoserine efflux; hypothetical protein 3180605..3181474 Pseudoalteromonas atlantica T6c 4174377 YP_662187.1 CDS Patl_2618 NC_008228.1 3181690 3182610 R PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: son:SO1876 NodD transcription activator-related protein; LysR family transcriptional regulator complement(3181690..3182610) Pseudoalteromonas atlantica T6c 4174378 YP_662188.1 CDS Patl_2619 NC_008228.1 3182773 3183378 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO1873 short chain dehydrogenase; short chain dehydrogenase 3182773..3183378 Pseudoalteromonas atlantica T6c 4174379 YP_662189.1 CDS Patl_2620 NC_008228.1 3183929 3184147 R hypothetical protein complement(3183929..3184147) Pseudoalteromonas atlantica T6c 4174380 YP_662190.1 CDS Patl_2621 NC_008228.1 3184537 3185418 D PFAM: metal-dependent protein hydrolase; KEGG: cps:CPS_2163 hypothetical protein; metal-dependent protein hydrolase 3184537..3185418 Pseudoalteromonas atlantica T6c 4174381 YP_662191.1 CDS Patl_2622 NC_008228.1 3185878 3186564 R PFAM: helix-turn-helix, AraC type; KEGG: cps:CPS_4694 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(3185878..3186564) Pseudoalteromonas atlantica T6c 4174382 YP_662192.1 CDS Patl_2623 NC_008228.1 3186635 3187096 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: cps:CPS_4693 alkylhydroperoxidase AhpD family core domain protein; alkylhydroperoxidase complement(3186635..3187096) Pseudoalteromonas atlantica T6c 4174383 YP_662193.1 CDS Patl_2624 NC_008228.1 3187786 3188940 D PFAM: Rieske [2Fe-2S] region; KEGG: fra:Francci3_0190 Rieske (2Fe-2S) protein; Rieske (2Fe-2S) domain-containing protein 3187786..3188940 Pseudoalteromonas atlantica T6c 4174384 YP_662194.1 CDS Patl_2625 NC_008228.1 3189038 3189772 D PFAM: NUDIX hydrolase; KEGG: ccr:CC2457 hypothetical protein; NUDIX hydrolase 3189038..3189772 Pseudoalteromonas atlantica T6c 4174385 YP_662195.1 CDS Patl_2626 NC_008228.1 3189960 3190409 R KEGG: ilo:IL1489 hypothetical protein; hypothetical protein complement(3189960..3190409) Pseudoalteromonas atlantica T6c 4174386 YP_662196.1 CDS Patl_2628 NC_008228.1 3191560 3192273 R PFAM: Cold-shock protein, DNA-binding protein of unknown function DUF1294; SMART: Cold shock protein; KEGG: neu:NE0717 cold-shock DNA-binding domain; cold-shock DNA-binding domain-containing protein complement(3191560..3192273) Pseudoalteromonas atlantica T6c 4174388 YP_662197.1 CDS Patl_2629 NC_008228.1 3192536 3192760 D KEGG: pca:Pcar_0527 hypothetical protein; hypothetical protein 3192536..3192760 Pseudoalteromonas atlantica T6c 4174389 YP_662198.1 CDS Patl_2630 NC_008228.1 3192753 3193043 D KEGG: pca:Pcar_0528 hypothetical protein; hypothetical protein 3192753..3193043 Pseudoalteromonas atlantica T6c 4174390 YP_662199.1 CDS Patl_2631 NC_008228.1 3193926 3194204 R KEGG: vvy:VV1875 hypothetical protein; hypothetical protein complement(3193926..3194204) Pseudoalteromonas atlantica T6c 4174391 YP_662200.1 CDS Patl_2633 NC_008228.1 3195308 3196228 R PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: ath:At1g22950 oxidoreductase, 2OG-Fe(II) oxygenase family protein; 2OG-Fe(II) oxygenase complement(3195308..3196228) Pseudoalteromonas atlantica T6c 4174393 YP_662201.1 CDS Patl_2634 NC_008228.1 3196655 3198028 D KEGG: cps:CPS_0414 hypothetical protein; hypothetical protein 3196655..3198028 Pseudoalteromonas atlantica T6c 4174394 YP_662202.1 CDS Patl_2635 NC_008228.1 3198138 3198680 R KEGG: ilo:IL2633 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase complement(3198138..3198680) Pseudoalteromonas atlantica T6c 4174395 YP_662203.1 CDS Patl_2636 NC_008228.1 3198784 3199197 R PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_4885 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(3198784..3199197) Pseudoalteromonas atlantica T6c 4174396 YP_662204.1 CDS Patl_2637 NC_008228.1 3199461 3200486 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: bcl:ABC0750 oxidoreductase; zinc-binding alcohol dehydrogenase 3199461..3200486 Pseudoalteromonas atlantica T6c 4174397 YP_662205.1 CDS Patl_2638 NC_008228.1 3200754 3201386 D PFAM: regulatory protein, TetR; KEGG: bur:Bcep18194_B0251 transcriptional regulator, TetR family; TetR family transcriptional regulator 3200754..3201386 Pseudoalteromonas atlantica T6c 4174398 YP_662206.1 CDS Patl_2639 NC_008228.1 3201444 3202481 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: pfo:Pfl_2939 zinc-containing alcohol dehydrogenase superfamily; zinc-binding alcohol dehydrogenase 3201444..3202481 Pseudoalteromonas atlantica T6c 4174399 YP_662207.1 CDS Patl_2640 NC_008228.1 3202543 3204984 R KEGG: sco:SCO3487 hydrolase; agarase complement(3202543..3204984) Pseudoalteromonas atlantica T6c 4174400 YP_662208.1 CDS Patl_2641 NC_008228.1 3205055 3206251 R PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: rba:RB12740 gluconolactonase [precursor]; gluconolactonase complement(3205055..3206251) Pseudoalteromonas atlantica T6c 4174401 YP_662209.1 CDS Patl_2642 NC_008228.1 3206286 3208634 R KEGG: sco:SCO3487 hydrolase; agarase complement(3206286..3208634) Pseudoalteromonas atlantica T6c 4174402 YP_662210.1 CDS Patl_2643 NC_008228.1 3208631 3209317 R PFAM: KDPG and KHG aldolase; KEGG: oih:OB2214 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase; KDPG and KHG aldolase complement(3208631..3209317) Pseudoalteromonas atlantica T6c 4174403 YP_662211.1 CDS Patl_2644 NC_008228.1 3209418 3210422 R PFAM: PfkB; KEGG: mta:Moth_0419 PfkB; PfkB protein complement(3209418..3210422) Pseudoalteromonas atlantica T6c 4174404 YP_662212.1 CDS Patl_2645 NC_008228.1 3210419 3211819 R PFAM: major facilitator superfamily MFS_1; KEGG: bld:BLi04069 putative galactonate transporter; RBL01028; major facilitator superfamily transporter complement(3210419..3211819) Pseudoalteromonas atlantica T6c 4174405 YP_662213.1 CDS Patl_2646 NC_008228.1 3211833 3212987 R PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: ret:RHE_PE00096 putative galactonate dehydratase protein; mandelate racemase/muconate lactonizing-like protein complement(3211833..3212987) Pseudoalteromonas atlantica T6c 4174406 YP_662214.1 CDS Patl_2647 NC_008228.1 3212984 3213679 R PFAM: regulatory protein GntR, HTH GntR-like; KEGG: ret:RHE_PE00101 probable transcriptional regulator protein, GntR family; GntR family transcriptional regulator complement(3212984..3213679) Pseudoalteromonas atlantica T6c 4174407 YP_662215.1 CDS Patl_2648 NC_008228.1 3213983 3214792 D TIGRFAM: exodeoxyribonuclease III exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ppr:PBPRA2737 putative exodeoxyribonuclease III; exodeoxyribonuclease III 3213983..3214792 Pseudoalteromonas atlantica T6c 4174408 YP_662216.1 CDS Patl_2649 NC_008228.1 3214807 3215463 D KEGG: ppr:PBPRA2767 hypothetical protein; hypothetical protein 3214807..3215463 Pseudoalteromonas atlantica T6c 4174409 YP_662217.1 CDS Patl_2650 NC_008228.1 3215580 3216254 R PFAM: ThiJ/PfpI; KEGG: tfu:Tfu_2826 intracellular protease/amidase, putative; ThiJ/PfpI complement(3215580..3216254) Pseudoalteromonas atlantica T6c 4174410 YP_662218.1 CDS Patl_2651 NC_008228.1 3216382 3217287 D PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: vfi:VF0649 transcriptional regulators, LysR family; LysR family transcriptional regulator 3216382..3217287 Pseudoalteromonas atlantica T6c 4174411 YP_662219.1 CDS Patl_2652 NC_008228.1 3217631 3217891 R hypothetical protein complement(3217631..3217891) Pseudoalteromonas atlantica T6c 4174412 YP_662220.1 CDS Patl_2653 NC_008228.1 3218230 3219186 D PFAM: transposase, IS111A/IS1328/IS1533 transposase IS116/IS110/IS902; KEGG: cps:CPS_2742 ISCps7, transposase; transposase IS116/IS110/IS902 3218230..3219186 Pseudoalteromonas atlantica T6c 4174413 YP_662221.1 CDS Patl_2654 NC_008228.1 3219218 3220060 R KEGG: vvu:VV12407 hypothetical protein; hypothetical protein complement(3219218..3220060) Pseudoalteromonas atlantica T6c 4174414 YP_662222.1 CDS Patl_2655 NC_008228.1 3220900 3221400 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_0532 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(3220900..3221400) Pseudoalteromonas atlantica T6c 4174415 YP_662223.1 CDS Patl_2656 NC_008228.1 3221563 3222444 D PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: cps:CPS_0531 transcriptional regulator, LysR family; LysR family transcriptional regulator 3221563..3222444 Pseudoalteromonas atlantica T6c 4174416 YP_662224.1 CDS Patl_2657 NC_008228.1 3222537 3223808 D PFAM: glycoside hydrolase, family 10; KEGG: xcb:XC_4207 endo-1,4-beta-xylanase A; endo-1,4-beta-xylanase 3222537..3223808 Pseudoalteromonas atlantica T6c 4174417 YP_662225.1 CDS Patl_2658 NC_008228.1 3223859 3237928 R KEGG: par:Psyc_1601 hypothetical protein; hypothetical protein complement(3223859..3237928) Pseudoalteromonas atlantica T6c 4174418 YP_662226.1 CDS Patl_2659 NC_008228.1 3238198 3239553 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: eba:ebA1783 outer membrane protein, ortholog involved in agglutination in some bacteria; TolC family type I secretion outer membrane protein 3238198..3239553 Pseudoalteromonas atlantica T6c 4174419 YP_662227.1 CDS Patl_2660 NC_008228.1 3239780 3241843 D PFAM: ABC transporter related; SMART: ATPase; KEGG: eba:ebA1807 ABC transporter, ATP-binding/permease; ABC transporter-like protein 3239780..3241843 Pseudoalteromonas atlantica T6c 4174420 YP_662228.1 CDS Patl_2661 NC_008228.1 3241840 3243261 D TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD; KEGG: eba:ebA1805 HlyD family secretion protein; HlyD family type I secretion membrane fusion protein 3241840..3243261 Pseudoalteromonas atlantica T6c 4174421 YP_662229.1 CDS Patl_2662 NC_008228.1 3243369 3245291 R PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: eba:ebA1787 hypothetical protein; diguanylate cyclase/phosphodiesterase complement(3243369..3245291) Pseudoalteromonas atlantica T6c 4174422 YP_662230.1 CDS Patl_2663 NC_008228.1 3245323 3246084 R KEGG: eba:ebA1785 hypothetical protein; hypothetical protein complement(3245323..3246084) Pseudoalteromonas atlantica T6c 4174423 YP_662231.1 CDS Patl_2664 NC_008228.1 3246230 3248218 R PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3; SMART: PAC motif; KEGG: dar:Daro_1614 PAS; GAF sensor hybrid histidine kinase complement(3246230..3248218) Pseudoalteromonas atlantica T6c 4174424 YP_662232.1 CDS Patl_2665 NC_008228.1 3248574 3250619 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: lpf:lpl1176 hypothetical protein; diguanylate cyclase/phosphodiesterase complement(3248574..3250619) Pseudoalteromonas atlantica T6c 4174425 YP_662233.1 CDS Patl_2666 NC_008228.1 3250931 3251923 R catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase complement(3250931..3251923) Pseudoalteromonas atlantica T6c 4174426 YP_662234.1 CDS Patl_2667 NC_008228.1 3252109 3253176 D TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like; KEGG: noc:Noc_1416 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 3252109..3253176 Pseudoalteromonas atlantica T6c 4174427 YP_662235.1 CDS Patl_2668 NC_008228.1 3253372 3254985 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 3253372..3254985 Pseudoalteromonas atlantica T6c 4174428 YP_662236.1 CDS Patl_2669 NC_008228.1 3254975 3255364 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 3254975..3255364 Pseudoalteromonas atlantica T6c 4174429 YP_662237.1 CDS Patl_2670 NC_008228.1 3255369 3255761 D TIGRFAM: F0F1-ATPase subunit, putative; KEGG: mba:Mbar_A3104 H(+)-transporting ATP synthase, gene 1; F0F1-ATPase subunit 3255369..3255761 Pseudoalteromonas atlantica T6c 4174430 YP_662238.1 CDS Patl_2672 NC_008228.1 3256067 3256786 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 3256067..3256786 Pseudoalteromonas atlantica T6c 4174432 YP_662239.1 CDS Patl_2673 NC_008228.1 3256786 3257064 D produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 3256786..3257064 Pseudoalteromonas atlantica T6c 4174433 YP_662240.1 CDS Patl_2674 NC_008228.1 3257068 3257976 D TIGRFAM: ATP synthase F0, B subunit; PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: mba:Mbar_A3100 hypothetical protein; ATP synthase F0 subunit B 3257068..3257976 Pseudoalteromonas atlantica T6c 4174434 YP_662241.1 CDS Patl_2675 NC_008228.1 3258045 3259631 D produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 3258045..3259631 Pseudoalteromonas atlantica T6c 4174435 YP_662242.1 CDS Patl_2676 NC_008228.1 3259615 3260523 D PFAM: H+-transporting two-sector ATPase, gamma subunit; KEGG: mac:MA2433 H(+)-transporting ATP synthase, subunit gamma; H+-transporting two-sector ATPase subunit gamma 3259615..3260523 Pseudoalteromonas atlantica T6c 4174436 YP_662243.1 CDS Patl_2677 NC_008228.1 3260762 3261124 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bja:bll5770 hypothetical protein; alkylhydroperoxidase 3260762..3261124 Pseudoalteromonas atlantica T6c 4174437 YP_662244.1 CDS Patl_2678 NC_008228.1 3261566 3263113 D TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein GAF; KEGG: dar:Daro_3445 PAS:GGDEF; GAF sensor-containing diguanylate cyclase 3261566..3263113 Pseudoalteromonas atlantica T6c 4174438 YP_662245.1 CDS Patl_2679 NC_008228.1 3263133 3264146 R PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: pha:PSHAa1771 GalR repressor of contiguous operon, likely to bind a galactoside; LacI family transcriptional regulator complement(3263133..3264146) Pseudoalteromonas atlantica T6c 4174439 YP_662246.1 CDS Patl_2680 NC_008228.1 3264161 3265588 R PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_3738 hypothetical protein; major facilitator superfamily transporter complement(3264161..3265588) Pseudoalteromonas atlantica T6c 4174440 YP_662247.1 CDS Patl_2681 NC_008228.1 3265604 3266611 R PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: pha:PSHAa1771 GalR repressor of contiguous operon, likely to bind a galactoside; LacI family transcriptional regulator complement(3265604..3266611) Pseudoalteromonas atlantica T6c 4174441 YP_662248.1 CDS Patl_2682 NC_008228.1 3266618 3267838 R PFAM: Aldose 1-epimerase; KEGG: rba:RB6537 aldose 1-epimerase; aldose 1-epimerase complement(3266618..3267838) Pseudoalteromonas atlantica T6c 4174442 YP_662249.1 CDS Patl_2683 NC_008228.1 3268064 3269632 R TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pha:PSHAa1768 sodium/hexose cotransport protein; SSS family solute/sodium (Na+) symporter complement(3268064..3269632) Pseudoalteromonas atlantica T6c 4174443 YP_662250.1 CDS Patl_2684 NC_008228.1 3269938 3270702 R PFAM: protein of unknown function DUF1080; KEGG: rba:RB1109 putative multi-domain protein; hypothetical protein complement(3269938..3270702) Pseudoalteromonas atlantica T6c 4174444 YP_662251.1 CDS Patl_2685 NC_008228.1 3270772 3271371 R TIGRFAM: Twin-arginine translocation pathway signal; KEGG: atc:AGR_L_978 hypothetical protein; twin-arginine translocation pathway signal protein complement(3270772..3271371) Pseudoalteromonas atlantica T6c 4174445 YP_662252.1 CDS Patl_2686 NC_008228.1 3271374 3273059 R PFAM: glucose-methanol-choline oxidoreductase; KEGG: atc:AGR_L_980 hypothetical protein; glucose-methanol-choline oxidoreductase complement(3271374..3273059) Pseudoalteromonas atlantica T6c 4174446 YP_662253.1 CDS Patl_2687 NC_008228.1 3273127 3274032 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Xylose isomerase-like TIM barrel; KEGG: rba:RB12073 hypothetical protein; twin-arginine translocation pathway signal protein complement(3273127..3274032) Pseudoalteromonas atlantica T6c 4174447 YP_662254.1 CDS Patl_2688 NC_008228.1 3274025 3275245 R PFAM: proton/sugar symporter, LacY nucleoside:H+ symporter major facilitator superfamily MFS_1; KEGG: ecs:ECs2901 putative nucleoside permease protein; nucleoside:H+ symporter complement(3274025..3275245) Pseudoalteromonas atlantica T6c 4174448 YP_662255.1 CDS Patl_2689 NC_008228.1 3275368 3276420 R PFAM: AP endonuclease 2-like Xylose isomerase-like TIM barrel; KEGG: atc:AGR_L_986 hypothetical protein; xylose isomerase-like TIM barrel domain-containing protein complement(3275368..3276420) Pseudoalteromonas atlantica T6c 4174449 YP_662256.1 CDS Patl_2690 NC_008228.1 3276575 3277762 R PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: ccr:CC1630 oxidoreductase, Gfo/Idh/MocA family; oxidoreductase-like protein complement(3276575..3277762) Pseudoalteromonas atlantica T6c 4174450 YP_662257.1 CDS Patl_2691 NC_008228.1 3278058 3279065 D PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: ppr:PBPRA0256 putative transcriptional repressor, LacI family; LacI family transcriptional regulator 3278058..3279065 Pseudoalteromonas atlantica T6c 4174451 YP_662258.1 CDS Patl_2692 NC_008228.1 3279114 3280016 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Xylose isomerase-like TIM barrel; KEGG: bja:bll7636 hypothetical protein; twin-arginine translocation pathway signal protein 3279114..3280016 Pseudoalteromonas atlantica T6c 4174452 YP_662259.1 CDS Patl_2693 NC_008228.1 3280154 3280840 R PFAM: regulatory protein GntR, HTH GntR-like; KEGG: ret:RHE_PE00101 probable transcriptional regulator protein, GntR family; GntR family transcriptional regulator complement(3280154..3280840) Pseudoalteromonas atlantica T6c 4174453 YP_662260.1 CDS Patl_2694 NC_008228.1 3281367 3284204 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3737 TonB-dependent receptor; TonB-dependent receptor 3281367..3284204 Pseudoalteromonas atlantica T6c 4174454 YP_662261.1 CDS Patl_2695 NC_008228.1 3284278 3285738 D PFAM: sulfatase; KEGG: rba:RB5295 heparan N-sulfatase; sulfatase 3284278..3285738 Pseudoalteromonas atlantica T6c 4174455 YP_662262.1 CDS Patl_2696 NC_008228.1 3285837 3286307 R PFAM: GCN5-related N-acetyltransferase; KEGG: vvu:VV20941 histone acetyltransferase HPA2; N-acetyltransferase GCN5 complement(3285837..3286307) Pseudoalteromonas atlantica T6c 4174456 YP_662263.1 CDS Patl_2697 NC_008228.1 3286684 3287847 D hypothetical protein 3286684..3287847 Pseudoalteromonas atlantica T6c 4174457 YP_662264.1 CDS Patl_2698 NC_008228.1 3287847 3288890 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3287847..3288890 Pseudoalteromonas atlantica T6c 4174458 YP_662265.1 CDS Patl_2699 NC_008228.1 3288916 3289614 D PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: mag:amb4369 transcriptional activatory protein AadR; Crp/FNR family transcriptional regulator 3288916..3289614 Pseudoalteromonas atlantica T6c 4174459 YP_662266.1 CDS Patl_2700 NC_008228.1 3289752 3290318 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3289752..3290318 Pseudoalteromonas atlantica T6c 4174460 YP_662267.1 CDS Patl_2701 NC_008228.1 3290570 3293038 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2138 TonB-dependent receptor; TonB-dependent receptor, plug 3290570..3293038 Pseudoalteromonas atlantica T6c 4174461 YP_662268.1 CDS Patl_2702 NC_008228.1 3293181 3294563 R PFAM: Alkaline phosphatase; KEGG: pfo:Pfl_0461 phosphodiesterase/alkaline phosphatase D-like; alkaline phosphatase complement(3293181..3294563) Pseudoalteromonas atlantica T6c 4174462 YP_662269.1 CDS Patl_2703 NC_008228.1 3294938 3295957 D TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: pha:PSHAb0368 putative GGDEF domain membrane protein; diguanylate cyclase 3294938..3295957 Pseudoalteromonas atlantica T6c 4174463 YP_662270.1 CDS Patl_2704 NC_008228.1 3296032 3297270 R PFAM: AFG1-like ATPase; KEGG: son:SO3756 hypothetical ATPase; AFG1-like ATPase complement(3296032..3297270) Pseudoalteromonas atlantica T6c 4174464 YP_662271.1 CDS Patl_2705 NC_008228.1 3297402 3298319 R PFAM: alpha/beta hydrolase fold; KEGG: rpa:RPA3731 alpha/beta hydrolase fold:esterase/lipase/thioesterase, active site; alpha/beta hydrolase fold protein complement(3297402..3298319) Pseudoalteromonas atlantica T6c 4174465 YP_662272.1 CDS Patl_2706 NC_008228.1 3298418 3298855 R TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily; KEGG: eli:ELI_05475 hypothetical protein; hypothetical protein complement(3298418..3298855) Pseudoalteromonas atlantica T6c 4174466 YP_662273.1 CDS Patl_2707 NC_008228.1 3299350 3300297 D PFAM: 2-nitropropane dioxygenase, NPD; KEGG: rso:RS05452 putative transmembrane protein; 2-nitropropane dioxygenase 3299350..3300297 Pseudoalteromonas atlantica T6c 4174467 YP_662274.1 CDS Patl_2708 NC_008228.1 3300337 3300648 R PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: cvi:CV0244 hypothetical protein; ethyl tert-butyl ether degradation EthD complement(3300337..3300648) Pseudoalteromonas atlantica T6c 4174468 YP_662275.1 CDS Patl_2709 NC_008228.1 3300876 3301226 R hypothetical protein complement(3300876..3301226) Pseudoalteromonas atlantica T6c 4174469 YP_662276.1 CDS Patl_2710 NC_008228.1 3301284 3302693 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: amine oxidase FAD dependent oxidoreductase; KEGG: baa:BA_2428 flavin containing amine oxidase; twin-arginine translocation pathway signal protein complement(3301284..3302693) Pseudoalteromonas atlantica T6c 4174470 YP_662277.1 CDS Patl_2711 NC_008228.1 3302821 3305109 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_2088 TonB-dependent receptor; TonB-dependent receptor, plug complement(3302821..3305109) Pseudoalteromonas atlantica T6c 4174471 YP_662278.1 CDS Patl_2712 NC_008228.1 3305413 3306477 R PFAM: protein of unknown function DUF1001; KEGG: cya:CYA_2044 CpeT protein; hypothetical protein complement(3305413..3306477) Pseudoalteromonas atlantica T6c 4174472 YP_662279.1 CDS Patl_2713 NC_008228.1 3306493 3307653 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: oih:OB2671 hypothetical protein; alpha-methylacyl-CoA racemase complement(3306493..3307653) Pseudoalteromonas atlantica T6c 4174473 YP_662280.1 CDS Patl_2714 NC_008228.1 3307704 3308894 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bpm:BURPS1710b_0637 CaiB/BaiF family protein; L-carnitine dehydratase/bile acid-inducible protein F complement(3307704..3308894) Pseudoalteromonas atlantica T6c 4174474 YP_662281.1 CDS Patl_2715 NC_008228.1 3308993 3310168 R PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: fra:Francci3_2430 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase-like protein complement(3308993..3310168) Pseudoalteromonas atlantica T6c 4174475 YP_662282.1 CDS Patl_2716 NC_008228.1 3310185 3310703 R PFAM: MaoC-like dehydratase; KEGG: yps:YPTB1925 putative transcription regulatory protein; MaoC-like dehydratase complement(3310185..3310703) Pseudoalteromonas atlantica T6c 4174476 YP_662283.1 CDS Patl_2717 NC_008228.1 3310723 3311550 R PFAM: HpcH/HpaI aldolase; KEGG: hma:rrnB0257 citrate lyase beta chain; citrate lyase complement(3310723..3311550) Pseudoalteromonas atlantica T6c 4174477 YP_662284.1 CDS Patl_2718 NC_008228.1 3311547 3312443 R PFAM: polysaccharide deacetylase; KEGG: pfl:PFL_4366 polysaccharide deacetylase family protein; polysaccharide deacetylase complement(3311547..3312443) Pseudoalteromonas atlantica T6c 4174478 YP_662285.1 CDS Patl_2719 NC_008228.1 3312521 3313363 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mac:MA0415 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase; short-chain dehydrogenase/reductase SDR complement(3312521..3313363) Pseudoalteromonas atlantica T6c 4174479 YP_662286.1 CDS Patl_2720 NC_008228.1 3313372 3313680 R hypothetical protein complement(3313372..3313680) Pseudoalteromonas atlantica T6c 4174480 YP_662287.1 CDS Patl_2721 NC_008228.1 3314007 3314195 R TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin, Txe/YoeB; KEGG: ilo:IL0286 RelE-like protein; addiction module antitoxin complement(3314007..3314195) Pseudoalteromonas atlantica T6c 4174481 YP_662288.1 CDS Patl_2722 NC_008228.1 3314568 3315020 R hypothetical protein complement(3314568..3315020) Pseudoalteromonas atlantica T6c 4174482 YP_662289.1 CDS Patl_2723 NC_008228.1 3315264 3316163 D TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: pae:PA3242 probable lauroyl acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 3315264..3316163 Pseudoalteromonas atlantica T6c 4174483 YP_662290.1 CDS Patl_2725 NC_008228.1 3316948 3319122 R PFAM: sulfatase; KEGG: rba:RB695 N-acetyl-galactosamine-6-sulfatase (GALNS); sulfatase complement(3316948..3319122) Pseudoalteromonas atlantica T6c 4174485 YP_662291.1 CDS Patl_2726 NC_008228.1 3319805 3320665 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: ppr:PBPRA0124 putative MadN protein; hypothetical protein 3319805..3320665 Pseudoalteromonas atlantica T6c 4174486 YP_662292.1 CDS Patl_2727 NC_008228.1 3320724 3321206 R KEGG: sil:SPO2303 hypothetical protein; hypothetical protein complement(3320724..3321206) Pseudoalteromonas atlantica T6c 4174487 YP_662293.1 CDS Patl_2728 NC_008228.1 3321371 3323257 R KEGG: cps:CPS_2637 hypothetical protein; hypothetical protein complement(3321371..3323257) Pseudoalteromonas atlantica T6c 4174488 YP_662294.1 CDS Patl_2729 NC_008228.1 3323774 3324151 R hypothetical protein complement(3323774..3324151) Pseudoalteromonas atlantica T6c 4174489 YP_662295.1 CDS Patl_2730 NC_008228.1 3324148 3325416 R PFAM: putative methyltransferase UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: syf:Synpcc7942_2054 hypothetical protein; type 12 methyltransferase complement(3324148..3325416) Pseudoalteromonas atlantica T6c 4174490 YP_662296.1 CDS Patl_2731 NC_008228.1 3325416 3326144 R hypothetical protein complement(3325416..3326144) Pseudoalteromonas atlantica T6c 4174491 YP_662297.1 CDS Patl_2732 NC_008228.1 3326478 3327137 D PFAM: isochorismatase hydrolase; KEGG: nph:NP6214A homolog 1 to N-carbamoylsarcosine amidase; isochorismatase hydrolase 3326478..3327137 Pseudoalteromonas atlantica T6c 4174492 YP_662298.1 CDS Patl_2733 NC_008228.1 3327340 3328353 D PFAM: polysaccharide deacetylase; KEGG: cyb:CYB_1488 polysaccharide deacetylase family protein; polysaccharide deacetylase 3327340..3328353 Pseudoalteromonas atlantica T6c 4174493 YP_662299.1 CDS Patl_2734 NC_008228.1 3328353 3329276 D PFAM: polysaccharide deacetylase; KEGG: reu:Reut_B4195 polysaccharide deacetylase; polysaccharide deacetylase 3328353..3329276 Pseudoalteromonas atlantica T6c 4174494 YP_662300.1 CDS Patl_2735 NC_008228.1 3329433 3329960 R KEGG: gsu:GSU0198 hypothetical protein; hypothetical protein complement(3329433..3329960) Pseudoalteromonas atlantica T6c 4174495 YP_662301.1 CDS Patl_2736 NC_008228.1 3330182 3330622 D PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_03985 histone acetyltransferase HPA2/related acetyltransferase; N-acetyltransferase GCN5 3330182..3330622 Pseudoalteromonas atlantica T6c 4174496 YP_662302.1 CDS Patl_2737 NC_008228.1 3330619 3330873 D hypothetical protein 3330619..3330873 Pseudoalteromonas atlantica T6c 4174497 YP_662303.1 CDS Patl_2738 NC_008228.1 3331581 3332135 R KEGG: lla:L130023 unknown protein; hypothetical protein complement(3331581..3332135) Pseudoalteromonas atlantica T6c 4174498 YP_662304.1 CDS Patl_2739 NC_008228.1 3332220 3332648 R hypothetical protein complement(3332220..3332648) Pseudoalteromonas atlantica T6c 4174499 YP_662305.1 CDS Patl_2740 NC_008228.1 3332780 3333988 D PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase; transposase, IS4 3332780..3333988 Pseudoalteromonas atlantica T6c 4174500 YP_662306.1 CDS Patl_2741 NC_008228.1 3334101 3334400 R hypothetical protein complement(3334101..3334400) Pseudoalteromonas atlantica T6c 4174501 YP_662307.1 CDS Patl_2742 NC_008228.1 3334527 3335096 R KEGG: ana:all2200 unknown protein; hypothetical protein complement(3334527..3335096) Pseudoalteromonas atlantica T6c 4174502 YP_662308.1 CDS Patl_2743 NC_008228.1 3335138 3335974 R KEGG: rso:RSc2612 hypothetical protein; hypothetical protein complement(3335138..3335974) Pseudoalteromonas atlantica T6c 4174503 YP_662309.1 CDS Patl_2744 NC_008228.1 3336143 3337351 D PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase; transposase, IS4 3336143..3337351 Pseudoalteromonas atlantica T6c 4174504 YP_662310.1 CDS Patl_2745 NC_008228.1 3337431 3337745 R hypothetical protein complement(3337431..3337745) Pseudoalteromonas atlantica T6c 4174505 YP_662311.1 CDS Patl_2746 NC_008228.1 3337926 3338465 R hypothetical protein complement(3337926..3338465) Pseudoalteromonas atlantica T6c 4174506 YP_662312.1 CDS Patl_2747 NC_008228.1 3338573 3339400 R KEGG: ftu:FTT0496 hypothetical protein; hypothetical protein complement(3338573..3339400) Pseudoalteromonas atlantica T6c 4174507 YP_662313.1 CDS Patl_2748 NC_008228.1 3339519 3340361 R KEGG: ade:Adeh_2330 hypothetical protein; hypothetical protein complement(3339519..3340361) Pseudoalteromonas atlantica T6c 4174508 YP_662314.1 CDS Patl_2749 NC_008228.1 3340461 3340700 D hypothetical protein 3340461..3340700 Pseudoalteromonas atlantica T6c 4174509 YP_662315.1 CDS Patl_2750 NC_008228.1 3340947 3341930 R KEGG: syn:sll1378 periplasmic protein, function unknown; hypothetical protein complement(3340947..3341930) Pseudoalteromonas atlantica T6c 4174510 YP_662316.1 CDS Patl_2751 NC_008228.1 3341927 3342343 R TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily; KEGG: gme:Gmet_2234 thioesterase superfamily; hypothetical protein complement(3341927..3342343) Pseudoalteromonas atlantica T6c 4174511 YP_662317.1 CDS Patl_2752 NC_008228.1 3342343 3343125 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: tte:TTE0544 Enoyl-CoA hydratase/carnithine racemase; enoyl-CoA hydratase/isomerase complement(3342343..3343125) Pseudoalteromonas atlantica T6c 4174512 YP_662318.1 CDS Patl_2753 NC_008228.1 3343247 3344143 D hypothetical protein 3343247..3344143 Pseudoalteromonas atlantica T6c 4174513 YP_662319.1 CDS Patl_2754 NC_008228.1 3344270 3344716 R KEGG: ana:all5013 unknown protein; hypothetical protein complement(3344270..3344716) Pseudoalteromonas atlantica T6c 4174514 YP_662320.1 CDS Patl_2755 NC_008228.1 3344890 3345699 R KEGG: bha:BH2279 hypothetical protein; hypothetical protein complement(3344890..3345699) Pseudoalteromonas atlantica T6c 4174515 YP_662321.1 CDS Patl_2756 NC_008228.1 3345789 3348014 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0936 TonB-dependent receptor; TonB-dependent receptor, plug complement(3345789..3348014) Pseudoalteromonas atlantica T6c 4174516 YP_662322.1 CDS Patl_2757 NC_008228.1 3348762 3350633 D KEGG: lxx:Lxx11970 hemagglutinin/hemolysin-related protein; hypothetical protein 3348762..3350633 Pseudoalteromonas atlantica T6c 4174517 YP_662323.1 CDS Patl_2758 NC_008228.1 3350683 3351270 D TIGRFAM: PEP motif putative anchor-like; KEGG: dar:Daro_2686 protein of unknown function DUF1555; PEP domain-containing protein 3350683..3351270 Pseudoalteromonas atlantica T6c 4174518 YP_662324.1 CDS Patl_2759 NC_008228.1 3351350 3352342 R PFAM: Alcohol dehydrogenase, zinc-binding; KEGG: vvu:VV20507 putative NADP-dependent oxidoreductase; zinc-binding alcohol dehydrogenase complement(3351350..3352342) Pseudoalteromonas atlantica T6c 4174519 YP_662325.1 CDS Patl_2760 NC_008228.1 3352383 3353030 R PFAM: glutathione S-transferase-like; KEGG: ava:Ava_5011 glutathione S-transferase-like; glutathione S-transferase-like protein complement(3352383..3353030) Pseudoalteromonas atlantica T6c 4174520 YP_662326.1 CDS Patl_2761 NC_008228.1 3353124 3353690 R PFAM: Carboxymuconolactone decarboxylase; KEGG: rba:RB8432 probable fusion protein; carboxymuconolactone decarboxylase complement(3353124..3353690) Pseudoalteromonas atlantica T6c 4174521 YP_662327.1 CDS Patl_2762 NC_008228.1 3353762 3354751 R PFAM: pyruvate carboxyltransferase; KEGG: aci:ACIAD2820 putative hydroxymethylglutaryl-CoA lyase; pyruvate carboxyltransferase complement(3353762..3354751) Pseudoalteromonas atlantica T6c 4174522 YP_662328.1 CDS Patl_2763 NC_008228.1 3355078 3356277 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ppu:PP3393 CaiB/BaiF family protein; L-carnitine dehydratase/bile acid-inducible protein F 3355078..3356277 Pseudoalteromonas atlantica T6c 4174523 YP_662329.1 CDS Patl_2764 NC_008228.1 3356551 3357216 R TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase-like; KEGG: bja:blr0495 3-isopropylmalate dehydratase small subunit; 3-isopropylmalate dehydratase small subunit complement(3356551..3357216) Pseudoalteromonas atlantica T6c 4174524 YP_662330.1 CDS Patl_2765 NC_008228.1 3357216 3358619 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(3357216..3358619) Pseudoalteromonas atlantica T6c 4174525 YP_662331.1 CDS Patl_2766 NC_008228.1 3358624 3359562 R PFAM: alpha/beta hydrolase fold; KEGG: bbr:BB1247 putative hydrolase; alpha/beta hydrolase fold protein complement(3358624..3359562) Pseudoalteromonas atlantica T6c 4174526 YP_662332.1 CDS Patl_2767 NC_008228.1 3359567 3361153 R PFAM: FAD linked oxidase-like; KEGG: bur:Bcep18194_A3821 FAD linked oxidase-like; FAD linked oxidase-like protein complement(3359567..3361153) Pseudoalteromonas atlantica T6c 4174527 YP_662333.1 CDS Patl_2768 NC_008228.1 3361380 3362153 D PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: bbr:BB4084 putative GntR-family transcriptional regulator; GntR family transcriptional regulator 3361380..3362153 Pseudoalteromonas atlantica T6c 4174528 YP_662334.1 CDS Patl_2769 NC_008228.1 3362305 3362994 R hypothetical protein complement(3362305..3362994) Pseudoalteromonas atlantica T6c 4174529 YP_662335.1 CDS Patl_2770 NC_008228.1 3363671 3364372 R PFAM: GCN5-related N-acetyltransferase; KEGG: ilo:IL2079 protein containing acetyltransferase (GNAT family) domain; N-acetyltransferase GCN5 complement(3363671..3364372) Pseudoalteromonas atlantica T6c 4174530 YP_662336.1 CDS Patl_2771 NC_008228.1 3364376 3364801 R PFAM: protein of unknown function DUF606; KEGG: ilo:IL2078 hypothetical protein; hypothetical protein complement(3364376..3364801) Pseudoalteromonas atlantica T6c 4174531 YP_662337.1 CDS Patl_2772 NC_008228.1 3364846 3365520 R PFAM: nitroreductase; KEGG: bba:Bd1162 nitroreductase; nitroreductase complement(3364846..3365520) Pseudoalteromonas atlantica T6c 4174532 YP_662338.1 CDS Patl_2773 NC_008228.1 3365617 3366213 R PFAM: cyclic nucleotide-binding; KEGG: ilo:IL2076 catabolite gene activator protein; cyclic nucleotide-binding protein complement(3365617..3366213) Pseudoalteromonas atlantica T6c 4174533 YP_662339.1 CDS Patl_2774 NC_008228.1 3366468 3366731 R hypothetical protein complement(3366468..3366731) Pseudoalteromonas atlantica T6c 4174534 YP_662340.1 CDS Patl_2775 NC_008228.1 3367607 3368836 R PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_3036 protein of unknown function DUF214; hypothetical protein complement(3367607..3368836) Pseudoalteromonas atlantica T6c 4174535 YP_662341.1 CDS Patl_2776 NC_008228.1 3368833 3369555 R PFAM: ABC transporter related; SMART: ATPase; KEGG: gme:Gmet_3037 ABC transporter-related protein; ABC transporter-like protein complement(3368833..3369555) Pseudoalteromonas atlantica T6c 4174536 YP_662342.1 CDS Patl_2777 NC_008228.1 3369555 3371024 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: ade:Adeh_2972 secretion protein HlyD; RND family efflux transporter MFP subunit complement(3369555..3371024) Pseudoalteromonas atlantica T6c 4174537 YP_662343.1 CDS Patl_2778 NC_008228.1 3371259 3372299 R PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: noc:Noc_1548 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase complement(3371259..3372299) Pseudoalteromonas atlantica T6c 4174538 YP_662344.1 CDS Patl_2779 NC_008228.1 3372302 3373210 R TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201 RimK-like ATP-grasp; KEGG: vvy:VVA1311 ribosomal protein S6 modification protein; alpha-L-glutamate ligase complement(3372302..3373210) Pseudoalteromonas atlantica T6c 4174539 YP_662345.1 CDS Patl_2780 NC_008228.1 3373364 3374272 D hypothetical protein 3373364..3374272 Pseudoalteromonas atlantica T6c 4174540 YP_662346.1 CDS Patl_2781 NC_008228.1 3374277 3375893 R PFAM: glucose-methanol-choline oxidoreductase GMC oxidoreductase; KEGG: ppr:PBPRA2212 hypothetical alcohol dehydrogenase; glucose-methanol-choline oxidoreductase complement(3374277..3375893) Pseudoalteromonas atlantica T6c 4174541 YP_662347.1 CDS Patl_2782 NC_008228.1 3376235 3378409 D PFAM: peptidase S9, prolyl oligopeptidase active site region peptidase S9A, prolyl oligopeptidase-like beta-propeller; KEGG: ilo:IL0145 prolyl endopeptidase; prolyl oligopeptidase 3376235..3378409 Pseudoalteromonas atlantica T6c 4174542 YP_662348.1 CDS Patl_2783 NC_008228.1 3378504 3378839 R hypothetical protein complement(3378504..3378839) Pseudoalteromonas atlantica T6c 4174543 YP_662349.1 CDS Patl_2784 NC_008228.1 3379058 3379660 D KEGG: tbd:Tbd_2342 hypothetical protein; hypothetical protein 3379058..3379660 Pseudoalteromonas atlantica T6c 4174544 YP_662350.1 CDS Patl_2785 NC_008228.1 3379691 3380629 R PFAM: Auxin Efflux Carrier; KEGG: vch:VCA0024 hypothetical protein; auxin efflux carrier complement(3379691..3380629) Pseudoalteromonas atlantica T6c 4174545 YP_662351.1 CDS Patl_2786 NC_008228.1 3380954 3383092 D PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: son:SO3564 peptidyl-dipeptidase Dcp; peptidyl-dipeptidase Dcp 3380954..3383092 Pseudoalteromonas atlantica T6c 4174546 YP_662352.1 CDS Patl_2787 NC_008228.1 3383276 3384610 R KEGG: cps:CPS_0854 amidohydrolase family protein; TIGRFAM: amidohydrolase; PFAM: peptidase M20 peptidase dimerisation; amidohydrolase complement(3383276..3384610) Pseudoalteromonas atlantica T6c 4174547 YP_662353.1 CDS Patl_2788 NC_008228.1 3384872 3385750 D PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: cps:CPS_2699 transcription regulator, LysR family; LysR family transcriptional regulator 3384872..3385750 Pseudoalteromonas atlantica T6c 4174548 YP_662354.1 CDS Patl_2789 NC_008228.1 3385938 3386939 D PFAM: protein of unknown function DUF1611; KEGG: rru:Rru_A2557 protein of unknown function DUF1611; hypothetical protein 3385938..3386939 Pseudoalteromonas atlantica T6c 4174549 YP_662355.1 CDS Patl_2790 NC_008228.1 3387027 3388052 D PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: sil:SPO3606 mandelate racemase/muconate lactonizing enzyme family protein; mandelate racemase/muconate lactonizing-like protein 3387027..3388052 Pseudoalteromonas atlantica T6c 4174550 YP_662356.1 CDS Patl_2791 NC_008228.1 3388132 3389250 R KEGG: pha:PSHAb0327 hypothetical protein; hypothetical protein complement(3388132..3389250) Pseudoalteromonas atlantica T6c 4174551 YP_662357.1 CDS Patl_2792 NC_008228.1 3389497 3391422 R necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH complement(3389497..3391422) Pseudoalteromonas atlantica T6c 4174552 YP_662358.1 CDS mdoG NC_008228.1 3391466 3393106 R involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G complement(3391466..3393106) Pseudoalteromonas atlantica T6c 4174553 YP_662359.1 CDS Patl_2794 NC_008228.1 3394112 3394822 R Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator complement(3394112..3394822) Pseudoalteromonas atlantica T6c 4174554 YP_662360.1 CDS nhaB NC_008228.1 3395069 3396649 D involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 3395069..3396649 Pseudoalteromonas atlantica T6c 4174555 YP_662361.1 CDS Patl_2796 NC_008228.1 3396731 3397246 D PFAM: Disulphide bond formation protein DsbB; KEGG: cps:CPS_3513 disulfide bond formation protein B; disulfide bond formation protein DsbB 3396731..3397246 Pseudoalteromonas atlantica T6c 4174556 YP_662362.1 CDS Patl_2797 NC_008228.1 3397555 3399066 D PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: pmm:PMM0425 hypothetical protein; deoxyribodipyrimidine photolyase-like protein 3397555..3399066 Pseudoalteromonas atlantica T6c 4174557 YP_662363.1 CDS Patl_2798 NC_008228.1 3399242 3399736 R PFAM: protein of unknown function UPF0153; KEGG: cps:CPS_3515 hypothetical protein; hypothetical protein complement(3399242..3399736) Pseudoalteromonas atlantica T6c 4174558 YP_662364.1 CDS Patl_2799 NC_008228.1 3399729 3400115 R hypothetical protein complement(3399729..3400115) Pseudoalteromonas atlantica T6c 4174559 YP_662365.1 CDS Patl_2800 NC_008228.1 3400200 3400859 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ecj:JW1169 predicted isomerase/hydrolase; fumarylacetoacetate (FAA) hydrolase complement(3400200..3400859) Pseudoalteromonas atlantica T6c 4174560 YP_662366.1 CDS Patl_2801 NC_008228.1 3400860 3401855 R TIGRFAM: lytic murein transglycosylase; KEGG: pha:PSHAb0509 putative periplasmic lytic murein transglycosylase; lytic murein transglycosylase complement(3400860..3401855) Pseudoalteromonas atlantica T6c 4174561 YP_662367.1 CDS Patl_2802 NC_008228.1 3401919 3402206 R PFAM: protein of unknown function DUF709; KEGG: sfx:S1256 hypothetical protein; hypothetical protein complement(3401919..3402206) Pseudoalteromonas atlantica T6c 4174562 YP_662368.1 CDS Patl_2803 NC_008228.1 3402199 3403401 R TIGRFAM: ribonuclease D; PFAM: HRDC 3'-5' exonuclease; KEGG: yps:YPTB2058 ribonuclease D; ribonuclease D complement(3402199..3403401) Pseudoalteromonas atlantica T6c 4174563 YP_662369.1 CDS Patl_2804 NC_008228.1 3403450 3405108 R PFAM: AMP-dependent synthetase and ligase; KEGG: stm:STM1818 acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase); AMP-dependent synthetase and ligase complement(3403450..3405108) Pseudoalteromonas atlantica T6c 4174564 YP_662370.1 CDS Patl_2805 NC_008228.1 3405260 3406207 R PFAM: alpha/beta hydrolase fold PGAP1-like; KEGG: son:SO2582 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold protein complement(3405260..3406207) Pseudoalteromonas atlantica T6c 4174565 YP_662371.1 CDS Patl_2806 NC_008228.1 3406323 3406919 R TIGRFAM: outer membrane lipoprotein, Slp family; PFAM: outer membrane lipoprotein Slp; KEGG: ilo:IL1829 starvation-inducible outer membrane lipoprotein; Slp family outer membrane lipoprotein complement(3406323..3406919) Pseudoalteromonas atlantica T6c 4174566 YP_662372.1 CDS Patl_2807 NC_008228.1 3407117 3407428 R hypothetical protein complement(3407117..3407428) Pseudoalteromonas atlantica T6c 4174567 YP_662373.1 CDS Patl_2808 NC_008228.1 3407660 3408364 R PFAM: peptidase M22, glycoprotease; KEGG: pha:PSHAb0498 putative protease; peptidase M22, glycoprotease complement(3407660..3408364) Pseudoalteromonas atlantica T6c 4174568 YP_662374.1 CDS Patl_2809 NC_008228.1 3408361 3410484 R SMART: Helicase c2 DEAD/DEAH box helicase-like; KEGG: ppr:PBPRA1070 putative ATP-dependent helicase, DinG family; helicase c2 complement(3408361..3410484) Pseudoalteromonas atlantica T6c 4174569 YP_662375.1 CDS Patl_2810 NC_008228.1 3410618 3411970 R PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: eli:ELI_03145 alpha-amylase, putative; alpha amylase complement(3410618..3411970) Pseudoalteromonas atlantica T6c 4174570 YP_662376.1 CDS Patl_2811 NC_008228.1 3412090 3413235 R KEGG: ddi:DDB0168484 hypothetical protein; hypothetical protein complement(3412090..3413235) Pseudoalteromonas atlantica T6c 4174571 YP_662377.1 CDS Patl_2812 NC_008228.1 3413432 3414175 D PFAM: flagellar L-ring protein; KEGG: vfi:VF1871 flagellar L-ring protein FlgH; flagellar L-ring protein 3413432..3414175 Pseudoalteromonas atlantica T6c 4174572 YP_662378.1 CDS Patl_2813 NC_008228.1 3414176 3415366 D KEGG: cps:CPS_1468 putative lipoprotein; hypothetical protein 3414176..3415366 Pseudoalteromonas atlantica T6c 4174573 YP_662379.1 CDS Patl_2814 NC_008228.1 3415819 3416004 R PFAM: SEC-C motif; KEGG: tde:TDE1898 preprotein translocase, SecA subunit; SecC motif-containing protein complement(3415819..3416004) Pseudoalteromonas atlantica T6c 4174574 YP_662380.1 CDS Patl_2815 NC_008228.1 3416382 3417296 D PFAM: homocysteine S-methyltransferase; KEGG: mlo:mlr1281 putative betaine-homocysteine S-methyltransferase; homocysteine S-methyltransferase 3416382..3417296 Pseudoalteromonas atlantica T6c 4174575 YP_662381.1 CDS Patl_2816 NC_008228.1 3417457 3417831 R hypothetical protein complement(3417457..3417831) Pseudoalteromonas atlantica T6c 4174576 YP_662382.1 CDS Patl_2817 NC_008228.1 3418128 3418943 D hypothetical protein 3418128..3418943 Pseudoalteromonas atlantica T6c 4174577 YP_662383.1 CDS Patl_2818 NC_008228.1 3419195 3421357 D PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: vch:VC1349 sensory box sensor histidine kinase/response regulator; periplasmic sensor hybrid histidine kinase 3419195..3421357 Pseudoalteromonas atlantica T6c 4174578 YP_662384.1 CDS Patl_2819 NC_008228.1 3421492 3422076 R KEGG: ilo:IL1417 outer membrane protein, porin family; porin family outer membrane protein complement(3421492..3422076) Pseudoalteromonas atlantica T6c 4174579 YP_662385.1 CDS Patl_2820 NC_008228.1 3422370 3422870 D KEGG: xcb:XC_1692 hypothetical protein; hypothetical protein 3422370..3422870 Pseudoalteromonas atlantica T6c 4174580 YP_662386.1 CDS Patl_2821 NC_008228.1 3423016 3423618 R KEGG: pca:Pcar_2559 hypothetical protein; hypothetical protein complement(3423016..3423618) Pseudoalteromonas atlantica T6c 4174581 YP_662387.1 CDS Patl_2823 NC_008228.1 3424746 3425015 R PFAM: protein of unknown function DUF1568; KEGG: son:SO4547 hypothetical protein; hypothetical protein complement(3424746..3425015) Pseudoalteromonas atlantica T6c 4174583 YP_662388.1 CDS Patl_2824 NC_008228.1 3425888 3426757 R TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 pseudouridine synthase; KEGG: eca:ECA2291 putative RNA pseudouridylate synthase; pseudouridine synthase Rsu complement(3425888..3426757) Pseudoalteromonas atlantica T6c 4174584 YP_662389.1 CDS Patl_2825 NC_008228.1 3426757 3427509 R TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: pha:PSHAa1341 hypothetical protein; putative transcriptional regulator complement(3426757..3427509) Pseudoalteromonas atlantica T6c 4174585 YP_662390.1 CDS Patl_2826 NC_008228.1 3427510 3428367 R PFAM: chromosome segregation and condensation protein ScpA; KEGG: son:SO3015 putative segregation and condensation protein A; chromosome segregation and condensation protein ScpA complement(3427510..3428367) Pseudoalteromonas atlantica T6c 4174586 YP_662391.1 CDS Patl_2827 NC_008228.1 3428385 3429005 R TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC-like; KEGG: yps:YPTB2134 hypothetical protein; Sua5/YciO/YrdC/YwlC family protein complement(3428385..3429005) Pseudoalteromonas atlantica T6c 4174587 YP_662392.1 CDS Patl_2828 NC_008228.1 3429038 3429904 R PFAM: PHP-like; SMART: Phosphoesterase PHP-like; KEGG: cps:CPS_3521 PHP domain protein; PHP-like protein complement(3429038..3429904) Pseudoalteromonas atlantica T6c 4174588 YP_662393.1 CDS Patl_2829 NC_008228.1 3430347 3431981 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 3430347..3431981 Pseudoalteromonas atlantica T6c 4174589 YP_662394.1 CDS Patl_2830 NC_008228.1 3431981 3432661 D TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: yps:YPTB2129 anthranilate synthase component II; glutamine amidotransferase of anthranilate synthase 3431981..3432661 Pseudoalteromonas atlantica T6c 4174590 YP_662395.1 CDS trpD NC_008228.1 3432671 3433693 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 3432671..3433693 Pseudoalteromonas atlantica T6c 4174591 YP_662396.1 CDS Patl_2832 NC_008228.1 3433704 3435110 D monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 3433704..3435110 Pseudoalteromonas atlantica T6c 4174592 YP_662397.1 CDS Patl_2833 NC_008228.1 3435165 3436352 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 3435165..3436352 Pseudoalteromonas atlantica T6c 4174593 YP_662398.1 CDS Patl_2834 NC_008228.1 3436345 3437187 D KEGG: vpa:VP1961 tryptophan synthase, alpha subunit; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase, alpha chain; tryptophan synthase subunit alpha 3436345..3437187 Pseudoalteromonas atlantica T6c 4174594 YP_662399.1 CDS Patl_2835 NC_008228.1 3437197 3437496 D PFAM: YCII-related; KEGG: ppr:PBPRA2508 conserved hypothetical protein; hypothetical protein 3437197..3437496 Pseudoalteromonas atlantica T6c 4174595 YP_662400.1 CDS Patl_2836 NC_008228.1 3437619 3438032 D PFAM: Class I peptide chain release factor; KEGG: pae:PA0868 hypothetical protein; class I peptide chain release factor 3437619..3438032 Pseudoalteromonas atlantica T6c 4174596 YP_662401.1 CDS Patl_2837 NC_008228.1 3438192 3439154 D KEGG: hch:HCH_02073 rhs family protein; hypothetical protein 3438192..3439154 Pseudoalteromonas atlantica T6c 4174597 YP_662402.1 CDS Patl_2838 NC_008228.1 3439257 3442079 D PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: neu:NE1444 TPR repeat; hypothetical protein 3439257..3442079 Pseudoalteromonas atlantica T6c 4174598 YP_662403.1 CDS Patl_2839 NC_008228.1 3442258 3442533 D PFAM: Propeptide, PepSY amd peptidase M4; peptidase 3442258..3442533 Pseudoalteromonas atlantica T6c 4174599 YP_662404.1 CDS Patl_2840 NC_008228.1 3442533 3443213 D PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: pha:PSHAa1283 response regulator in two-component regulatory system with PhoQ; two component transcriptional regulator 3442533..3443213 Pseudoalteromonas atlantica T6c 4174600 YP_662405.1 CDS Patl_2841 NC_008228.1 3443217 3444554 D PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region; KEGG: pha:PSHAa1282 sensory histidine kinase in two-component regulatory system with PhoP; sensor signal transduction histidine kinase 3443217..3444554 Pseudoalteromonas atlantica T6c 4174601 YP_662406.1 CDS Patl_2842 NC_008228.1 3444617 3445726 R PFAM: MscS Mechanosensitive ion channel; KEGG: dps:DP2962 hypothetical protein; mechanosensitive ion channel protein MscS complement(3444617..3445726) Pseudoalteromonas atlantica T6c 4174602 YP_662407.1 CDS Patl_2843 NC_008228.1 3446136 3446906 R KEGG: ilo:IL0094 TPR repeats containing protein; hypothetical protein complement(3446136..3446906) Pseudoalteromonas atlantica T6c 4174603 YP_662408.1 CDS Patl_2844 NC_008228.1 3447140 3449449 R KEGG: tfu:Tfu_1737 oxidoreductase alpha (molybdopterin) subunit; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region; oxidoreductase alpha (molybdopterin) subunit complement(3447140..3449449) Pseudoalteromonas atlantica T6c 4174604 YP_662409.1 CDS Patl_2845 NC_008228.1 3449524 3450387 R PFAM: formate dehydrogenase, subunit FdhD; KEGG: pub:SAR11_0681 formate dehydrogenase chain D; formate dehydrogenase subunit FdhD complement(3449524..3450387) Pseudoalteromonas atlantica T6c 4174605 YP_662410.1 CDS Patl_2846 NC_008228.1 3450720 3451727 R PFAM: protein of unknown function DUF81; KEGG: cps:CPS_1011 hypothetical protein; hypothetical protein complement(3450720..3451727) Pseudoalteromonas atlantica T6c 4174606 YP_662411.1 CDS Patl_2847 NC_008228.1 3451879 3452376 D KEGG: hch:HCH_01348 integral membrane protein; hypothetical protein 3451879..3452376 Pseudoalteromonas atlantica T6c 4174607 YP_662412.1 CDS Patl_2848 NC_008228.1 3452408 3453529 R KEGG: bja:bll1370 hypothetical protein; hypothetical protein complement(3452408..3453529) Pseudoalteromonas atlantica T6c 4174608 YP_662413.1 CDS Patl_2849 NC_008228.1 3453686 3454642 D PFAM: beta-lactamase-like; KEGG: pmu:PM0039 arylsulfatase precursor; beta-lactamase-like protein 3453686..3454642 Pseudoalteromonas atlantica T6c 4174609 YP_662414.1 CDS Patl_2850 NC_008228.1 3454851 3455354 R KEGG: ppu:PP1756 hypothetical protein; hypothetical protein complement(3454851..3455354) Pseudoalteromonas atlantica T6c 4174610 YP_662415.1 CDS Patl_2853 NC_008228.1 3459320 3460303 R KEGG: ppu:PP3831 hypothetical protein; hypothetical protein complement(3459320..3460303) Pseudoalteromonas atlantica T6c 4174612 YP_662416.1 CDS Patl_2854 NC_008228.1 3460510 3461055 D PFAM: regulatory protein, TetR; KEGG: ppr:PBPRB1080 hypothetical protein; TetR family transcriptional regulator 3460510..3461055 Pseudoalteromonas atlantica T6c 4174613 YP_662417.1 CDS Patl_2855 NC_008228.1 3461042 3462124 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: ppr:PBPRB1079 hypothetical oxidoreductase protein; zinc-binding alcohol dehydrogenase 3461042..3462124 Pseudoalteromonas atlantica T6c 4174614 YP_662418.1 CDS Patl_2856 NC_008228.1 3462220 3463617 R hypothetical protein complement(3462220..3463617) Pseudoalteromonas atlantica T6c 4174615 YP_662419.1 CDS Patl_2857 NC_008228.1 3463850 3464353 D PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_2464 acetyltransferase, GNAT family; N-acetyltransferase GCN5 3463850..3464353 Pseudoalteromonas atlantica T6c 4174616 YP_662420.1 CDS Patl_2858 NC_008228.1 3464503 3466470 D KEGG: pst:PSPTO1001 hypothetical protein; hypothetical protein 3464503..3466470 Pseudoalteromonas atlantica T6c 4174617 YP_662421.1 CDS Patl_2859 NC_008228.1 3466633 3468618 D KEGG: dme:CG18730-PA CG18730 gene product from transcript CG18730-RA; PFAM: alpha amylase, catalytic region alpha amylase, C-terminal all-beta; SMART: Alpha amylase, catalytic subdomain; alpha-amylase 3466633..3468618 Pseudoalteromonas atlantica T6c 4174618 YP_662422.1 CDS Patl_2860 NC_008228.1 3468730 3469479 R PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: reu:Reut_B3533 regulatory protein GntR, HTH:UbiC transcription regulator-associated; GntR family transcriptional regulator complement(3468730..3469479) Pseudoalteromonas atlantica T6c 4174619 YP_662423.1 CDS Patl_2861 NC_008228.1 3469829 3471916 D PFAM: glycoside hydrolase, family 31; KEGG: tfu:Tfu_1613 putative alpha-glucosidase; glycoside hydrolase 3469829..3471916 Pseudoalteromonas atlantica T6c 4174620 YP_662424.1 CDS Patl_2862 NC_008228.1 3471944 3472495 D PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: bcl:ABC4045 TRAP-type transport system permease small protein; tripartite ATP-independent periplasmic transporter DctQ 3471944..3472495 Pseudoalteromonas atlantica T6c 4174621 YP_662425.1 CDS Patl_2863 NC_008228.1 3472497 3473783 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bcl:ABC4044 TRAP-type transport system permease large protein; TRAP dicarboxylate transporter subunit DctM 3472497..3473783 Pseudoalteromonas atlantica T6c 4174622 YP_662426.1 CDS Patl_2864 NC_008228.1 3473785 3474825 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: chy:CHY_1301 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 3473785..3474825 Pseudoalteromonas atlantica T6c 4174623 YP_662427.1 CDS Patl_2865 NC_008228.1 3475211 3477607 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: nar:Saro_2447 TonB-dependent receptor; TonB-dependent receptor 3475211..3477607 Pseudoalteromonas atlantica T6c 4174624 YP_662428.1 CDS Patl_2866 NC_008228.1 3477914 3478255 D hypothetical protein 3477914..3478255 Pseudoalteromonas atlantica T6c 4174625 YP_662429.1 CDS Patl_2867 NC_008228.1 3478387 3479085 R PFAM: cation efflux protein; KEGG: ilo:IL0774 Co/Zn/Cd efflux system component; cation efflux protein complement(3478387..3479085) Pseudoalteromonas atlantica T6c 4174626 YP_662430.1 CDS Patl_2868 NC_008228.1 3479152 3479541 D PFAM: regulatory protein, MerR; KEGG: cps:CPS_1955 transcriptional regulator, MerR family; MerR family transcriptional regulator 3479152..3479541 Pseudoalteromonas atlantica T6c 4174627 YP_662431.1 CDS Patl_2869 NC_008228.1 3479649 3482723 R PFAM: acriflavin resistance protein; KEGG: vpa:VPA0809 transporter, AcrB/D/F family; acriflavin resistance protein complement(3479649..3482723) Pseudoalteromonas atlantica T6c 4174628 YP_662432.1 CDS Patl_2870 NC_008228.1 3482720 3483775 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: vpa:VPA0808 putative periplasmic linker protein; RND family efflux transporter MFP subunit complement(3482720..3483775) Pseudoalteromonas atlantica T6c 4174629 YP_662433.1 CDS Patl_2871 NC_008228.1 3483775 3484848 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: vpa:VPA0807 putative multidrug resistance protein; RND family efflux transporter MFP subunit complement(3483775..3484848) Pseudoalteromonas atlantica T6c 4174630 YP_662434.1 CDS Patl_2872 NC_008228.1 3485020 3485739 D PFAM: regulatory protein, TetR; KEGG: vch:VCA0767 transcriptional regulator, TetR family; TetR family transcriptional regulator 3485020..3485739 Pseudoalteromonas atlantica T6c 4174631 YP_662435.1 CDS Patl_2873 NC_008228.1 3485818 3486213 R KEGG: cjr:CJE0004 hypothetical protein; hypothetical protein complement(3485818..3486213) Pseudoalteromonas atlantica T6c 4174632 YP_662436.1 CDS Patl_2874 NC_008228.1 3486216 3487589 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: oxidoreductase, molybdopterin binding Mo-co oxidoreductase dimerisation domain; KEGG: vpa:VPA1143 putative molybdenum containing oxidoreductase; twin-arginine translocation pathway signal protein complement(3486216..3487589) Pseudoalteromonas atlantica T6c 4174633 YP_662437.1 CDS Patl_2875 NC_008228.1 3487612 3488607 R PFAM: conserved hypothetical protein 698; KEGG: cte:CT0845 hypothetical protein; hypothetical protein complement(3487612..3488607) Pseudoalteromonas atlantica T6c 4174634 YP_662438.1 CDS Patl_2876 NC_008228.1 3488674 3489663 R KEGG: eli:ELI_03725 SyrP protein, putative; SyrP protein complement(3488674..3489663) Pseudoalteromonas atlantica T6c 4174635 YP_662439.1 CDS Patl_2877 NC_008228.1 3489673 3490638 R PFAM: aldo/keto reductase; KEGG: eli:ELI_03720 aldehyde reductase; aldehyde reductase complement(3489673..3490638) Pseudoalteromonas atlantica T6c 4174636 YP_662440.1 CDS Patl_2878 NC_008228.1 3490924 3491376 R KEGG: tbd:Tbd_0063 hypothetical protein; hypothetical protein complement(3490924..3491376) Pseudoalteromonas atlantica T6c 4174637 YP_662441.1 CDS Patl_2879 NC_008228.1 3491380 3491724 R hypothetical protein complement(3491380..3491724) Pseudoalteromonas atlantica T6c 4174638 YP_662442.1 CDS hisG NC_008228.1 3492356 3493255 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 3492356..3493255 Pseudoalteromonas atlantica T6c 4174639 YP_662443.1 CDS Patl_2881 NC_008228.1 3493336 3494652 D PFAM: histidinol dehydrogenase; KEGG: vpa:VP1138 histidinol dehydrogenase; histidinol dehydrogenase 3493336..3494652 Pseudoalteromonas atlantica T6c 4174640 YP_662444.1 CDS Patl_2882 NC_008228.1 3494645 3495760 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 3494645..3495760 Pseudoalteromonas atlantica T6c 4174641 YP_662445.1 CDS Patl_2883 NC_008228.1 3495762 3496838 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 3495762..3496838 Pseudoalteromonas atlantica T6c 4174642 YP_662446.1 CDS hisH NC_008228.1 3496838 3497467 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 3496838..3497467 Pseudoalteromonas atlantica T6c 4174643 YP_662447.1 CDS Patl_2885 NC_008228.1 3497476 3498210 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 3497476..3498210 Pseudoalteromonas atlantica T6c 4174644 YP_662448.1 CDS Patl_2886 NC_008228.1 3498398 3499396 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 3498398..3499396 Pseudoalteromonas atlantica T6c 4174645 YP_662449.1 CDS Patl_2887 NC_008228.1 3499473 3500246 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 3499473..3500246 Pseudoalteromonas atlantica T6c 4174646 YP_662450.1 CDS Patl_2888 NC_008228.1 3500308 3500928 D PFAM: phosphoribosyl-AMP cyclohydrolase phosphoribosyl-ATP pyrophosphohydrolase; KEGG: yps:YPTB1555 histidine biosynthesis bifunctional protein; phosphoribosyl-ATP pyrophosphohydrolase 3500308..3500928 Pseudoalteromonas atlantica T6c 4174647 YP_662451.1 CDS Patl_2889 NC_008228.1 3501258 3501809 D PFAM: cytochrome B561; KEGG: ppr:PBPRB0400 putative cytochrome b561; cytochrome B561 3501258..3501809 Pseudoalteromonas atlantica T6c 4174648 YP_662452.1 CDS Patl_2890 NC_008228.1 3501812 3502381 D PFAM: YceI; KEGG: pha:PSHAa1298 periplasmic protein; hypothetical protein 3501812..3502381 Pseudoalteromonas atlantica T6c 4174649 YP_662453.1 CDS Patl_2891 NC_008228.1 3502701 3503165 D PFAM: heat shock protein Hsp20; KEGG: pha:PSHAa0993 small heat shock protein; heat shock protein Hsp20 3502701..3503165 Pseudoalteromonas atlantica T6c 4174650 YP_662454.1 CDS Patl_2892 NC_008228.1 3503281 3503670 R KEGG: mag:amb2570 uncharacterized relative of glutathione S-transferase; glutathione S-transferase-like protein complement(3503281..3503670) Pseudoalteromonas atlantica T6c 4174651 YP_662455.1 CDS adk NC_008228.1 3503801 3504445 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(3503801..3504445) Pseudoalteromonas atlantica T6c 4174652 YP_662456.1 CDS Patl_2894 NC_008228.1 3504634 3506556 R molecular chaperone; heat shock protein 90 complement(3504634..3506556) Pseudoalteromonas atlantica T6c 4174653 YP_662457.1 CDS Patl_2895 NC_008228.1 3506713 3507315 R KEGG: ssn:SSO_0459 recombination and repair; TIGRFAM: recombination protein RecR; PFAM: RecR protein TOPRIM domain containing protein; SMART: Toprim subdomain; recombination protein RecR complement(3506713..3507315) Pseudoalteromonas atlantica T6c 4174654 YP_662458.1 CDS Patl_2896 NC_008228.1 3507354 3507653 R PFAM: conserved hypothetical protein 103; KEGG: ilo:IL1848 hypothetical protein; hypothetical protein complement(3507354..3507653) Pseudoalteromonas atlantica T6c 4174655 YP_662459.1 CDS Patl_2897 NC_008228.1 3507711 3510455 R KEGG: pha:PSHAa1201 DnaX, DNA polymerase III, gamma/tau subunits; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central region; SMART: ATPase; DNA polymerase III subunits gamma and tau complement(3507711..3510455) Pseudoalteromonas atlantica T6c 4174656 YP_662460.1 CDS Patl_2898 NC_008228.1 3510465 3511001 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(3510465..3511001) Pseudoalteromonas atlantica T6c 4174657 YP_662461.1 CDS Patl_2899 NC_008228.1 3511242 3511991 R KEGG: pha:PSHAa1198 hypothetical protein; hypothetical protein complement(3511242..3511991) Pseudoalteromonas atlantica T6c 4174658 YP_662462.1 CDS Patl_2900 NC_008228.1 3511992 3512840 R PFAM: protein of unknown function DUF692; KEGG: pha:PSHAa1197 hypothetical protein; hypothetical protein complement(3511992..3512840) Pseudoalteromonas atlantica T6c 4174659 YP_662463.1 CDS Patl_2901 NC_008228.1 3512956 3513429 R KEGG: pha:PSHAa1196 hypothetical protein; hypothetical protein complement(3512956..3513429) Pseudoalteromonas atlantica T6c 4174660 YP_662464.1 CDS Patl_2902 NC_008228.1 3513966 3515207 R PFAM: beta-lactamase; KEGG: nar:Saro_2025 beta-lactamase; beta-lactamase complement(3513966..3515207) Pseudoalteromonas atlantica T6c 4174661 YP_662465.1 CDS anmK NC_008228.1 3515668 3516873 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(3515668..3516873) Pseudoalteromonas atlantica T6c 4174662 YP_662466.1 CDS Patl_2904 NC_008228.1 3517075 3519819 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3760 TonB-dependent receptor; TonB-dependent receptor 3517075..3519819 Pseudoalteromonas atlantica T6c 4174663 YP_662467.1 CDS Patl_2905 NC_008228.1 3520112 3520435 D KEGG: cps:CPS_1442 hypothetical protein; hypothetical protein 3520112..3520435 Pseudoalteromonas atlantica T6c 4174664 YP_662468.1 CDS Patl_2906 NC_008228.1 3521010 3521351 R hypothetical protein complement(3521010..3521351) Pseudoalteromonas atlantica T6c 4174665 YP_662469.1 CDS Patl_2907 NC_008228.1 3521352 3522431 R KEGG: hch:HCH_05761 hypothetical protein; hypothetical protein complement(3521352..3522431) Pseudoalteromonas atlantica T6c 4174666 YP_662470.1 CDS Patl_2908 NC_008228.1 3522801 3523823 D PFAM: cobalamin synthesis protein, P47K; KEGG: cps:CPS_1300 cobalamin synthesis protein/P47K family protein; cobalamin synthesis protein, P47K 3522801..3523823 Pseudoalteromonas atlantica T6c 4174667 YP_662471.1 CDS Patl_2909 NC_008228.1 3524245 3525363 R PFAM: protein of unknown function UPF0118; KEGG: son:SO2920 hypothetical protein; hypothetical protein complement(3524245..3525363) Pseudoalteromonas atlantica T6c 4174668 YP_662472.1 CDS folX NC_008228.1 3525557 3525922 D catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 3525557..3525922 Pseudoalteromonas atlantica T6c 4174669 YP_662473.1 CDS Patl_2911 NC_008228.1 3525940 3526833 D TIGRFAM: conserved hypothetical protein; PFAM: NAD-dependent epimerase/dehydratase Domain of unknown function DUF1731; KEGG: eca:ECA3046 hypothetical protein; hypothetical protein 3525940..3526833 Pseudoalteromonas atlantica T6c 4174670 YP_662474.1 CDS Patl_2912 NC_008228.1 3526973 3529501 R PFAM: protein of unknown function DUF214; KEGG: ilo:IL1766 ABC-type transport system, permease component; hypothetical protein complement(3526973..3529501) Pseudoalteromonas atlantica T6c 4174671 YP_662475.1 CDS Patl_2913 NC_008228.1 3529505 3530230 R PFAM: ABC transporter related; SMART: ATPase; KEGG: cps:CPS_2309 ABC transporter, ATP-binding domain; ABC transporter-like protein complement(3529505..3530230) Pseudoalteromonas atlantica T6c 4174672 YP_662476.1 CDS Patl_2914 NC_008228.1 3530247 3530885 D PFAM: lipolytic enzyme, G-D-S-L; KEGG: son:SO2928 acyl-CoA thioesterase I, putative; arylesterase 3530247..3530885 Pseudoalteromonas atlantica T6c 4174673 YP_662477.1 CDS Patl_2915 NC_008228.1 3531332 3532264 R PFAM: dihydrouridine synthase, DuS; KEGG: son:SO2006 NifR3/Smm1 family protein; dihydrouridine synthase, DuS complement(3531332..3532264) Pseudoalteromonas atlantica T6c 4174674 YP_662478.1 CDS Patl_2916 NC_008228.1 3532769 3533974 D PFAM: protein of unknown function DUF898, transmembrane; KEGG: sme:SMc00782 hypothetical protein; hypothetical protein 3532769..3533974 Pseudoalteromonas atlantica T6c 4174675 YP_662479.1 CDS Patl_2917 NC_008228.1 3533979 3534986 D PFAM: peptidase M48, Ste24p; KEGG: rso:RSc0644 putative transmembrane protein; peptidase M48, Ste24p 3533979..3534986 Pseudoalteromonas atlantica T6c 4174676 YP_662480.1 CDS Patl_2918 NC_008228.1 3535033 3535431 R hypothetical protein complement(3535033..3535431) Pseudoalteromonas atlantica T6c 4174677 YP_662481.1 CDS gltX NC_008228.1 3536654 3538063 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(3536654..3538063) Pseudoalteromonas atlantica T6c 4174682 YP_662482.1 CDS Patl_2920 NC_008228.1 3539802 3541418 D PFAM: response regulator receiver; SMART: Tetratricopeptide region; KEGG: pha:PSHAa1088 TPR motives; response regulator receiver protein 3539802..3541418 Pseudoalteromonas atlantica T6c 4174686 YP_662483.1 CDS Patl_2921 NC_008228.1 3541734 3542978 R TIGRFAM: kynureninase; PFAM: aminotransferase, class V; KEGG: ilo:IL2179 kynureninase; kynureninase complement(3541734..3542978) Pseudoalteromonas atlantica T6c 4174687 YP_662484.1 CDS Patl_2922 NC_008228.1 3542978 3543901 R KEGG: ilo:IL2178 putative lipase/esterase; putative lipase/esterase complement(3542978..3543901) Pseudoalteromonas atlantica T6c 4174688 YP_662485.1 CDS Patl_2923 NC_008228.1 3544078 3545262 R KEGG: pha:PSHAa1454 acetyl-CoA acetyltransferase with thiolase domain; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; acetyl-CoA acetyltransferase complement(3544078..3545262) Pseudoalteromonas atlantica T6c 4174689 YP_662486.1 CDS Patl_2924 NC_008228.1 3545542 3545937 D PFAM: regulatory protein, MerR; KEGG: ilo:IL0873 transcriptional regulator, MerR family; MerR family transcriptional regulator 3545542..3545937 Pseudoalteromonas atlantica T6c 4174690 YP_662487.1 CDS Patl_2925 NC_008228.1 3545934 3547103 D PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: son:SO1897 isovaleryl-CoA dehydrogenase; isovaleryl-CoA dehydrogenase 3545934..3547103 Pseudoalteromonas atlantica T6c 4174691 YP_662488.1 CDS Patl_2926 NC_008228.1 3547194 3548801 D PFAM: carboxyl transferase; KEGG: cps:CPS_1602 methylcrotonyl CoA carboxylase, beta subunit; propionyl-CoA carboxylase 3547194..3548801 Pseudoalteromonas atlantica T6c 4174692 YP_662489.1 CDS Patl_2927 NC_008228.1 3548814 3549635 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gme:Gmet_3291 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 3548814..3549635 Pseudoalteromonas atlantica T6c 4174693 YP_662490.1 CDS Patl_2928 NC_008228.1 3549632 3551659 D PFAM: biotin/lipoyl attachment Carbamoyl-phosphate synthase L chain, ATP-binding Carbamoyl-phosphate synthetase large chain-like biotin carboxylase-like; KEGG: cps:CPS_1600 methylcrotonyl-CoA carboxylase, alpha subunit; carbamoyl-phosphate synthase subunit L 3549632..3551659 Pseudoalteromonas atlantica T6c 4174694 YP_662491.1 CDS Patl_2929 NC_008228.1 3551656 3552573 D PFAM: pyruvate carboxyltransferase; KEGG: cps:CPS_1599 hydroxymethylglutaryl-CoA lyase; pyruvate carboxyltransferase 3551656..3552573 Pseudoalteromonas atlantica T6c 4174695 YP_662492.1 CDS Patl_2930 NC_008228.1 3552613 3553023 R KEGG: cps:CPS_4304 hypothetical protein; hypothetical protein complement(3552613..3553023) Pseudoalteromonas atlantica T6c 4174696 YP_662493.1 CDS Patl_2931 NC_008228.1 3553169 3553708 R KEGG: jan:Jann_0111 hypothetical protein; hypothetical protein complement(3553169..3553708) Pseudoalteromonas atlantica T6c 4174697 YP_662494.1 CDS glgC NC_008228.1 3554161 3555423 D catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 3554161..3555423 Pseudoalteromonas atlantica T6c 4174698 YP_662495.1 CDS Patl_2933 NC_008228.1 3555489 3556328 R PFAM: alpha/beta hydrolase fold; KEGG: cps:CPS_4105 hypothetical protein; alpha/beta hydrolase fold protein complement(3555489..3556328) Pseudoalteromonas atlantica T6c 4174699 YP_662496.1 CDS Patl_2934 NC_008228.1 3556356 3557681 R PFAM: major facilitator superfamily MFS_1; KEGG: ccr:CC2486 major facilitator family transporter; major facilitator superfamily transporter complement(3556356..3557681) Pseudoalteromonas atlantica T6c 4174700 YP_662497.1 CDS Patl_2935 NC_008228.1 3557938 3558750 D KEGG: pha:PSHAb0355 putative acyl-CoA thioesterase, TesB family; TesB family acyl-CoA thioesterase 3557938..3558750 Pseudoalteromonas atlantica T6c 4174701 YP_662498.1 CDS Patl_2936 NC_008228.1 3558857 3559702 R KEGG: cps:CPS_4407 hypothetical protein; putative signal transduction protein complement(3558857..3559702) Pseudoalteromonas atlantica T6c 4174702 YP_662499.1 CDS Patl_2937 NC_008228.1 3560531 3561286 R PFAM: Tetratricopeptide TPR_2; KEGG: ilo:IL1078 uncharacterized conserved protein, contains TPR repeats; hypothetical protein complement(3560531..3561286) Pseudoalteromonas atlantica T6c 4174705 YP_662500.1 CDS Patl_2938 NC_008228.1 3561298 3561858 R PFAM: OmpA/MotB; KEGG: pha:PSHAa1870 required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA; OmpA/MotB protein complement(3561298..3561858) Pseudoalteromonas atlantica T6c 4174706 YP_662501.1 CDS tolB NC_008228.1 3561905 3563260 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(3561905..3563260) Pseudoalteromonas atlantica T6c 4174707 YP_662502.1 CDS Patl_2940 NC_008228.1 3563260 3564156 R PFAM: TolA; KEGG: son:SO2749 tolA protein; hypothetical protein complement(3563260..3564156) Pseudoalteromonas atlantica T6c 4174708 YP_662503.1 CDS Patl_2941 NC_008228.1 3564170 3564592 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ilo:IL1082 biopolymer transport protein; biopolymer transport protein ExbD/TolR complement(3564170..3564592) Pseudoalteromonas atlantica T6c 4174709 YP_662504.1 CDS Patl_2942 NC_008228.1 3564605 3565315 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: cps:CPS_1728 TolQ protein; MotA/TolQ/ExbB proton channel complement(3564605..3565315) Pseudoalteromonas atlantica T6c 4174710 YP_662505.1 CDS Patl_2943 NC_008228.1 3565305 3565727 R TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily; KEGG: cps:CPS_1727 conserved hypothetical protein; 4-hydroxybenzoyl-CoA thioesterase complement(3565305..3565727) Pseudoalteromonas atlantica T6c 4174711 YP_662506.1 CDS ruvB NC_008228.1 3566331 3567338 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(3566331..3567338) Pseudoalteromonas atlantica T6c 4174712 YP_662507.1 CDS Patl_2945 NC_008228.1 3567469 3568098 R KEGG: vfi:VF0951 holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein, RuvA RuvA-like; SMART: Helix-hairpin-helix DNA-binding, class 1; Holliday junction DNA helicase RuvA complement(3567469..3568098) Pseudoalteromonas atlantica T6c 4174713 YP_662508.1 CDS ruvC NC_008228.1 3568115 3568636 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(3568115..3568636) Pseudoalteromonas atlantica T6c 4174714 YP_662509.1 CDS ntpA NC_008228.1 3568673 3569056 R converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase complement(3568673..3569056) Pseudoalteromonas atlantica T6c 4174715 YP_662510.1 CDS aspS NC_008228.1 3569143 3570921 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(3569143..3570921) Pseudoalteromonas atlantica T6c 4174716 YP_662511.1 CDS Patl_2949 NC_008228.1 3571223 3572125 D PFAM: protein of unknown function DUF72; KEGG: pha:PSHAa1939 hypothetical protein; hypothetical protein 3571223..3572125 Pseudoalteromonas atlantica T6c 4174717 YP_662512.1 CDS Patl_2950 NC_008228.1 3572273 3573466 R KEGG: pha:PSHAa1625 ABC-type Na+ efflux pump, permease component; Na+ efflux pump ABC transporter permease complement(3572273..3573466) Pseudoalteromonas atlantica T6c 4174718 YP_662513.1 CDS Patl_2951 NC_008228.1 3573481 3574263 R PFAM: ABC transporter related; SMART: ATPase; KEGG: pha:PSHAa1626 sodium ABC exporter ATP-binding protein; ABC transporter-like protein complement(3573481..3574263) Pseudoalteromonas atlantica T6c 4174719 YP_662514.1 CDS Patl_2952 NC_008228.1 3574507 3575214 D KEGG: pha:PSHAa2825 hypothetical protein; hypothetical protein 3574507..3575214 Pseudoalteromonas atlantica T6c 4174720 YP_662515.1 CDS Patl_2953 NC_008228.1 3575253 3576107 R KEGG: pha:PSHAa1627 hypothetical protein; hypothetical protein complement(3575253..3576107) Pseudoalteromonas atlantica T6c 4174721 YP_662516.1 CDS Patl_2954 NC_008228.1 3576185 3577828 D PFAM: peptidase M28; KEGG: pha:PSHAa1628 glutamate carboxypeptidase II; peptidase M28 3576185..3577828 Pseudoalteromonas atlantica T6c 4174722 YP_662517.1 CDS asnB NC_008228.1 3578144 3579814 D functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 3578144..3579814 Pseudoalteromonas atlantica T6c 4174723 YP_662518.1 CDS Patl_2956 NC_008228.1 3580005 3580892 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: lpl:lp_0060 short-chain dehydrogenase/oxidoreductase; short-chain dehydrogenase/reductase SDR complement(3580005..3580892) Pseudoalteromonas atlantica T6c 4174724 YP_662519.1 CDS Patl_2957 NC_008228.1 3581278 3582285 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: par:Psyc_0011 probable zinc-containing alcohol dehydrogenase; zinc-binding alcohol dehydrogenase 3581278..3582285 Pseudoalteromonas atlantica T6c 4174725 YP_662520.1 CDS Patl_2958 NC_008228.1 3582458 3583330 R KEGG: hch:HCH_06743 hypothetical protein; hypothetical protein complement(3582458..3583330) Pseudoalteromonas atlantica T6c 4174726 YP_662521.1 CDS Patl_2959 NC_008228.1 3583323 3583757 R hypothetical protein complement(3583323..3583757) Pseudoalteromonas atlantica T6c 4174727 YP_662522.1 CDS Patl_2960 NC_008228.1 3583772 3584518 R PFAM: Radical SAM; KEGG: cps:CPS_2883 radical SAM domain protein; radical SAM family protein complement(3583772..3584518) Pseudoalteromonas atlantica T6c 4174728 YP_662523.1 CDS Patl_2961 NC_008228.1 3584552 3585208 D TIGRFAM: exsB protein; PFAM: ExsB; KEGG: pha:PSHAa1116 regulator protein; exsB protein 3584552..3585208 Pseudoalteromonas atlantica T6c 4174729 YP_662524.1 CDS Patl_2962 NC_008228.1 3585380 3586300 R PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pfl:PFL_0732 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3585380..3586300) Pseudoalteromonas atlantica T6c 4174730 YP_662525.1 CDS Patl_2963 NC_008228.1 3586509 3588518 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(3586509..3588518) Pseudoalteromonas atlantica T6c 4174731 YP_662526.1 CDS Patl_2964 NC_008228.1 3588554 3589915 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cps:CPS_2888 MATE efflux family protein; MATE efflux family protein complement(3588554..3589915) Pseudoalteromonas atlantica T6c 4174732 YP_662527.1 CDS Patl_2965 NC_008228.1 3591647 3592228 D TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: ppr:PBPRA2560 putative RnfA-related protein (RnfA, Predicted NADH:ubiquinone oxidoreductase, subunit RnfA); RnfABCDGE type electron transport complex subunit A 3591647..3592228 Pseudoalteromonas atlantica T6c 4174735 YP_662528.1 CDS Patl_2966 NC_008228.1 3592228 3592794 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 3592228..3592794 Pseudoalteromonas atlantica T6c 4174736 YP_662529.1 CDS Patl_2967 NC_008228.1 3592794 3595466 D TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: pha:PSHAa1103 electron transport complex protein RnfC; RnfABCDGE type electron transport complex subunit C 3592794..3595466 Pseudoalteromonas atlantica T6c 4174737 YP_662530.1 CDS rnfD NC_008228.1 3595475 3596548 D RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 3595475..3596548 Pseudoalteromonas atlantica T6c 4174738 YP_662531.1 CDS Patl_2969 NC_008228.1 3596545 3597192 D TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding; KEGG: vch:VC1013 RnfG-related protein; RnfABCDGE type electron transport complex subunit G 3596545..3597192 Pseudoalteromonas atlantica T6c 4174739 YP_662532.1 CDS Patl_2970 NC_008228.1 3597199 3597897 D in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 3597199..3597897 Pseudoalteromonas atlantica T6c 4174740 YP_662533.1 CDS Patl_2971 NC_008228.1 3597932 3598564 D KEGG: vpa:VP2108 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif HhH-GPD; SMART: Iron-sulfur cluster loop; endonuclease III 3597932..3598564 Pseudoalteromonas atlantica T6c 4174741 YP_662534.1 CDS Patl_2972 NC_008228.1 3598721 3599077 R PFAM: DoxX; KEGG: jan:Jann_0759 hypothetical protein; DoxX protein complement(3598721..3599077) Pseudoalteromonas atlantica T6c 4174742 YP_662535.1 CDS Patl_2973 NC_008228.1 3599177 3600070 D PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: son:SO1907 transcriptional regulator, LysR family; LysR family transcriptional regulator 3599177..3600070 Pseudoalteromonas atlantica T6c 4174743 YP_662536.1 CDS Patl_2974 NC_008228.1 3600175 3600426 D SMART: Iron-sulfur cluster loop; KEGG: ppr:PBPRA2566 putative endonuclease III; iron-sulfur cluster protein 3600175..3600426 Pseudoalteromonas atlantica T6c 4174744 YP_662537.1 CDS Patl_2975 NC_008228.1 3600513 3601277 R KEGG: sil:SPO0890 lipase, putative; lipase complement(3600513..3601277) Pseudoalteromonas atlantica T6c 4174745 YP_662538.1 CDS Patl_2976 NC_008228.1 3601262 3601948 R TIGRFAM: Fibrobacter succinogenes major paralogous domain; KEGG: cte:CT0060 hypothetical protein; hypothetical protein complement(3601262..3601948) Pseudoalteromonas atlantica T6c 4174746 YP_662539.1 CDS Patl_2977 NC_008228.1 3602009 3602959 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rba:RB4725 probable oxidoreductase yajO1; short-chain dehydrogenase/reductase SDR complement(3602009..3602959) Pseudoalteromonas atlantica T6c 4174747 YP_662540.1 CDS Patl_2978 NC_008228.1 3603170 3604063 D PFAM: helix-turn-helix, AraC type AraC-type transcriptional regulator-like; KEGG: bte:BTH_I0153 transcriptional regulator, AraC family; AraC family transcriptional regulator 3603170..3604063 Pseudoalteromonas atlantica T6c 4174748 YP_662541.1 CDS Patl_2979 NC_008228.1 3604280 3604447 D SMART: Iron-sulfur cluster loop; KEGG: ilo:IL1800 endonuclease III; iron-sulfur cluster protein 3604280..3604447 Pseudoalteromonas atlantica T6c 4174749 YP_662542.1 CDS Patl_2980 NC_008228.1 3604481 3604675 D KEGG: btk:BT9727_4273 hypothetical protein; hypothetical protein 3604481..3604675 Pseudoalteromonas atlantica T6c 4174750 YP_662543.1 CDS Patl_2981 NC_008228.1 3604749 3605501 D PFAM: protein of unknown function DUF81; KEGG: oih:OB0991 hypothetical protein; hypothetical protein 3604749..3605501 Pseudoalteromonas atlantica T6c 4174751 YP_662544.1 CDS Patl_2982 NC_008228.1 3605580 3606086 R KEGG: pha:PSHAa0525 hypothetical protein; hypothetical protein complement(3605580..3606086) Pseudoalteromonas atlantica T6c 4174752 YP_662545.1 CDS Patl_2983 NC_008228.1 3606148 3607653 R KEGG: cps:CPS_4835 putative heat shock protein 70 family protein; putative heat shock protein 70 family protein complement(3606148..3607653) Pseudoalteromonas atlantica T6c 4174753 YP_662546.1 CDS Patl_2984 NC_008228.1 3607927 3608709 R KEGG: mag:amb2868 hypothetical protein; hypothetical protein complement(3607927..3608709) Pseudoalteromonas atlantica T6c 4174754 YP_662547.1 CDS Patl_2985 NC_008228.1 3608909 3610168 R PFAM: TPR repeat; SMART: Tetratricopeptide region; KEGG: cps:CPS_3751 TPR domain protein; hypothetical protein complement(3608909..3610168) Pseudoalteromonas atlantica T6c 4174755 YP_662548.1 CDS Patl_2986 NC_008228.1 3610168 3610782 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pha:PSHAa1191 TonB2 protein; iron acquisition via a siderophore-mediated active transport; TonB family protein complement(3610168..3610782) Pseudoalteromonas atlantica T6c 4174756 YP_662549.1 CDS Patl_2987 NC_008228.1 3610784 3611185 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ilo:IL1856 biopolymer transport protein; biopolymer transport protein ExbD/TolR complement(3610784..3611185) Pseudoalteromonas atlantica T6c 4174757 YP_662550.1 CDS Patl_2988 NC_008228.1 3611198 3611722 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: cps:CPS_3754 biopolymer transport ExbB protein; MotA/TolQ/ExbB proton channel complement(3611198..3611722) Pseudoalteromonas atlantica T6c 4174758 YP_662551.1 CDS Patl_2989 NC_008228.1 3611724 3613076 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: ilo:IL1858 TonB system biopolymer transport component; MotA/TolQ/ExbB proton channel complement(3611724..3613076) Pseudoalteromonas atlantica T6c 4174759 YP_662552.1 CDS Patl_2990 NC_008228.1 3613082 3613846 R KEGG: cps:CPS_3756 hypothetical protein; hypothetical protein complement(3613082..3613846) Pseudoalteromonas atlantica T6c 4174760 YP_662553.1 CDS Patl_2991 NC_008228.1 3614365 3615339 D PFAM: Methyltransferase type 11; KEGG: pha:PSHAa1988 S-adenosyl-L-methionine-dependent methyltransferase; type 11 methyltransferase 3614365..3615339 Pseudoalteromonas atlantica T6c 4174761 YP_662554.1 CDS Patl_2992 NC_008228.1 3615946 3617592 R PFAM: TPR repeat Sel1-like repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: aae:aq_1088 hypothetical protein; hypothetical protein complement(3615946..3617592) Pseudoalteromonas atlantica T6c 4174762 YP_662555.1 CDS Patl_2993 NC_008228.1 3617682 3620582 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: zmo:ZMO1522 hypothetical protein; TonB-dependent receptor complement(3617682..3620582) Pseudoalteromonas atlantica T6c 4174763 YP_662556.1 CDS Patl_2994 NC_008228.1 3621079 3621345 D KEGG: cps:CPS_3759 hypothetical protein; hypothetical protein 3621079..3621345 Pseudoalteromonas atlantica T6c 4174764 YP_662557.1 CDS Patl_2995 NC_008228.1 3621586 3622701 R PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: son:SO2638 leucine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase complement(3621586..3622701) Pseudoalteromonas atlantica T6c 4174765 YP_662558.1 CDS Patl_2996 NC_008228.1 3622858 3623328 D PFAM: regulatory proteins, AsnC/Lrp; KEGG: ppu:PP4595 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 3622858..3623328 Pseudoalteromonas atlantica T6c 4174766 YP_662559.1 CDS Patl_2997 NC_008228.1 3623460 3624542 R KEGG: vpa:VP1349 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase complement(3623460..3624542) Pseudoalteromonas atlantica T6c 4174767 YP_662560.1 CDS Patl_2998 NC_008228.1 3624746 3626302 R PFAM: sigma-54 factor, interaction region amino acid-binding ACT; SMART: PAS ATPase; KEGG: pha:PSHAa2157 transcriptional regulatory protein TyrR; transcriptional regulator TyrR complement(3624746..3626302) Pseudoalteromonas atlantica T6c 4174768 YP_662561.1 CDS phhA NC_008228.1 3626435 3627235 R phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase complement(3626435..3627235) Pseudoalteromonas atlantica T6c 4174769 YP_662562.1 CDS Patl_3000 NC_008228.1 3627662 3628738 R PFAM: conserved hypothetical protein 1620; KEGG: vfi:VFA0315 hypothetical protein; hypothetical protein complement(3627662..3628738) Pseudoalteromonas atlantica T6c 4174770 YP_662563.1 CDS Patl_3001 NC_008228.1 3628735 3630159 R PFAM: protein of unknown function DUF463, YcjX-like protein; KEGG: yps:YPTB2266 hypothetical protein; hypothetical protein complement(3628735..3630159) Pseudoalteromonas atlantica T6c 4174771 YP_662564.1 CDS Patl_3002 NC_008228.1 3630322 3630783 R PFAM: PspC; KEGG: pha:PSHAa2047 transcriptional activator of the psp operon with PspB, phage shock protein; phage shock protein C, PspC complement(3630322..3630783) Pseudoalteromonas atlantica T6c 4174772 YP_662565.1 CDS pspB NC_008228.1 3630780 3631016 R acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B complement(3630780..3631016) Pseudoalteromonas atlantica T6c 4174773 YP_662566.1 CDS Patl_3004 NC_008228.1 3631039 3631722 R PFAM: PspA/IM30; KEGG: cps:CPS_3772 phage shock protein A; phage shock protein A, PspA complement(3631039..3631722) Pseudoalteromonas atlantica T6c 4174774 YP_662567.1 CDS Patl_3005 NC_008228.1 3631939 3633051 D PFAM: sigma-54 factor, interaction region helix-turn-helix, Fis-type ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: cps:CPS_3774 sigma-54 depedent transcriptional activator PspF; sigma-54 dependent trancsriptional regulator 3631939..3633051 Pseudoalteromonas atlantica T6c 4174775 YP_662568.1 CDS Patl_3006 NC_008228.1 3633057 3634691 D PFAM: extracellular solute-binding protein, family 5; KEGG: pha:PSHAa2051 ABC transporter periplasmic peptide-binding protein; extracellular solute-binding protein 3633057..3634691 Pseudoalteromonas atlantica T6c 4174776 YP_662569.1 CDS Patl_3007 NC_008228.1 3634691 3635722 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pha:PSHAa2052 peptide transport protein (ABC superfamily, membrane); binding-protein-dependent transport system inner membrane protein 3634691..3635722 Pseudoalteromonas atlantica T6c 4174777 YP_662570.1 CDS Patl_3008 NC_008228.1 3635709 3636602 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pha:PSHAa2053 peptide transport protein (ABC superfamily, membrane); binding-protein-dependent transport system inner membrane protein 3635709..3636602 Pseudoalteromonas atlantica T6c 4174778 YP_662571.1 CDS Patl_3009 NC_008228.1 3636602 3637597 D KEGG: ppr:PBPRA2444 putative peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; oligopeptide/dipeptide ABC transporter ATPase 3636602..3637597 Pseudoalteromonas atlantica T6c 4174779 YP_662572.1 CDS Patl_3010 NC_008228.1 3637594 3638379 D PFAM: ABC transporter related; SMART: ATPase; KEGG: son:SO1801 peptide ABC transporter, ATP-binding protein; ABC transporter-like protein 3637594..3638379 Pseudoalteromonas atlantica T6c 4174780 YP_662573.1 CDS Patl_3011 NC_008228.1 3638482 3639612 R KEGG: pha:PSHAa0540 oxaloacetate decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; sodium ion-translocating decarboxylase subunit beta complement(3638482..3639612) Pseudoalteromonas atlantica T6c 4174781 YP_662574.1 CDS Patl_3012 NC_008228.1 3639622 3641412 R catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase complement(3639622..3641412) Pseudoalteromonas atlantica T6c 4174782 YP_662575.1 CDS Patl_3013 NC_008228.1 3641443 3641772 R TIGRFAM: sodium pump decarboxylases, gamma subunit; PFAM: sodium pump decarboxylase, gamma subunit; KEGG: mca:MCA2481 oxaloacetate decarboxylase, gamma subunit; sodium pump decarboxylase subunit gamma complement(3641443..3641772) Pseudoalteromonas atlantica T6c 4174783 YP_662576.1 CDS Patl_3014 NC_008228.1 3642770 3642985 R PFAM: carbon storage regulator; KEGG: vpa:VP2546 carbon storage regulator; carbon storage regulator CsrA complement(3642770..3642985) Pseudoalteromonas atlantica T6c 4174787 YP_662577.1 CDS alaS NC_008228.1 3643121 3645718 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(3643121..3645718) Pseudoalteromonas atlantica T6c 4174788 YP_662578.1 CDS Patl_3016 NC_008228.1 3645844 3646311 R PFAM: regulatory protein RecX; KEGG: vpa:VP2549 regulatory protein RecX; regulatory protein RecX complement(3645844..3646311) Pseudoalteromonas atlantica T6c 4174789 YP_662579.1 CDS Patl_3017 NC_008228.1 3646338 3647492 D PFAM: protein of unknown function DUF482; KEGG: cps:CPS_0679 hypothetical protein; hypothetical protein 3646338..3647492 Pseudoalteromonas atlantica T6c 4174790 YP_662580.1 CDS Patl_3018 NC_008228.1 3647546 3648175 R PFAM: protein of unknown function DUF938; KEGG: tbd:Tbd_0032 hypothetical protein; hypothetical protein complement(3647546..3648175) Pseudoalteromonas atlantica T6c 4174791 YP_662581.1 CDS Patl_3021 NC_008228.1 3652013 3652939 R catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase complement(3652013..3652939) Pseudoalteromonas atlantica T6c 4174793 YP_662582.1 CDS Patl_3022 NC_008228.1 3653253 3653657 R KEGG: son:SO3200 hypothetical protein; hypothetical protein complement(3653253..3653657) Pseudoalteromonas atlantica T6c 4174794 YP_662583.1 CDS Patl_3023 NC_008228.1 3653694 3654188 R PFAM: CheW-like protein; KEGG: pha:PSHAa0818 purine-binding chemotaxis protein; CheW protein complement(3653694..3654188) Pseudoalteromonas atlantica T6c 4174795 YP_662584.1 CDS Patl_3024 NC_008228.1 3654212 3655075 R PFAM: CheW-like protein; KEGG: pha:PSHAa0817 conserved protein of unknown function; putative CheW-like protein; CheW protein complement(3654212..3655075) Pseudoalteromonas atlantica T6c 4174796 YP_662585.1 CDS Patl_3025 NC_008228.1 3655072 3655851 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pha:PSHAa0816 partitioning protein A; cobyrinic acid a,c-diamide synthase complement(3655072..3655851) Pseudoalteromonas atlantica T6c 4174797 YP_662586.1 CDS Patl_3026 NC_008228.1 3655920 3657059 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase complement(3655920..3657059) Pseudoalteromonas atlantica T6c 4174798 YP_662587.1 CDS Patl_3027 NC_008228.1 3657084 3659348 R PFAM: CheW-like protein ATP-binding region, ATPase-like Signal transducing histidine kinase, homodimeric Hpt; KEGG: son:SO3207 chemotaxis protein; CheA signal transduction histidine kinase complement(3657084..3659348) Pseudoalteromonas atlantica T6c 4174799 YP_662588.1 CDS Patl_3028 NC_008228.1 3659361 3660104 R PFAM: Chemotaxis phosphatase, CheZ; KEGG: pha:PSHAa0811 chemotaxis protein CheZ; chemotaxis phosphatase, CheZ complement(3659361..3660104) Pseudoalteromonas atlantica T6c 4174800 YP_662589.1 CDS Patl_3029 NC_008228.1 3660136 3660519 R PFAM: response regulator receiver; KEGG: son:SO3209 chemotaxis protein CheY; response regulator receiver protein complement(3660136..3660519) Pseudoalteromonas atlantica T6c 4174801 YP_662590.1 CDS fliA NC_008228.1 3660567 3661295 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor complement(3660567..3661295) Pseudoalteromonas atlantica T6c 4174802 YP_662591.1 CDS Patl_3031 NC_008228.1 3661292 3662158 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pha:PSHAa0808 flagellar biosynthetic protein FlhG; cobyrinic acid a,c-diamide synthase complement(3661292..3662158) Pseudoalteromonas atlantica T6c 4174803 YP_662592.1 CDS Patl_3032 NC_008228.1 3662155 3663486 R PFAM: GTP-binding signal recognition particle SRP54, G-domain; SMART: ATPase; KEGG: pha:PSHAa0807 flagellar biosynthesis protein; GTP-binding signal recognition particle complement(3662155..3663486) Pseudoalteromonas atlantica T6c 4174804 YP_662593.1 CDS flhA NC_008228.1 3663521 3665623 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(3663521..3665623) Pseudoalteromonas atlantica T6c 4174805 YP_662594.1 CDS Patl_3034 NC_008228.1 3665745 3666869 R TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: pha:PSHAa0805 flagellar biosynthesis protein; flagellar biosynthetic protein FlhB complement(3665745..3666869) Pseudoalteromonas atlantica T6c 4174806 YP_662595.1 CDS fliR NC_008228.1 3666882 3667661 R FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR complement(3666882..3667661) Pseudoalteromonas atlantica T6c 4174807 YP_662596.1 CDS Patl_3036 NC_008228.1 3667663 3667932 R TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: son:SO3217 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ complement(3667663..3667932) Pseudoalteromonas atlantica T6c 4174808 YP_662597.1 CDS fliP NC_008228.1 3667935 3668690 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(3667935..3668690) Pseudoalteromonas atlantica T6c 4174809 YP_662598.1 CDS Patl_3038 NC_008228.1 3668683 3669183 R PFAM: flagellar biosynthesis protein, FliO; KEGG: pha:PSHAa0801 flagellar protein; flagellar biosynthesis protein, FliO complement(3668683..3669183) Pseudoalteromonas atlantica T6c 4174810 YP_662599.1 CDS fliN NC_008228.1 3669143 3669538 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein complement(3669143..3669538) Pseudoalteromonas atlantica T6c 4174811 YP_662600.1 CDS fliM NC_008228.1 3669559 3670617 R with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM complement(3669559..3670617) Pseudoalteromonas atlantica T6c 4174812 YP_662601.1 CDS fliL NC_008228.1 3670636 3671163 R interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL complement(3670636..3671163) Pseudoalteromonas atlantica T6c 4174813 YP_662602.1 CDS Patl_3042 NC_008228.1 3671242 3673413 R PFAM: flagellar hook-length control protein; KEGG: cps:CPS_1507 putative flagellar hook-length control protein; flagellar hook-length control protein complement(3671242..3673413) Pseudoalteromonas atlantica T6c 4174814 YP_662603.1 CDS Patl_3043 NC_008228.1 3673771 3674211 R TIGRFAM: flagellar export protein FliJ; KEGG: ilo:IL1196 flagellar biosynthesis chaperone; flagellar export protein FliJ complement(3673771..3674211) Pseudoalteromonas atlantica T6c 4174815 YP_662604.1 CDS fliI NC_008228.1 3674296 3675630 R involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase complement(3674296..3675630) Pseudoalteromonas atlantica T6c 4174816 YP_662605.1 CDS fliH NC_008228.1 3675637 3676437 R binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H complement(3675637..3676437) Pseudoalteromonas atlantica T6c 4174817 YP_662606.1 CDS fliG NC_008228.1 3676465 3677520 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(3676465..3677520) Pseudoalteromonas atlantica T6c 4174818 YP_662607.1 CDS fliF NC_008228.1 3677564 3679270 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein complement(3677564..3679270) Pseudoalteromonas atlantica T6c 4174819 YP_662608.1 CDS Patl_3048 NC_008228.1 3679281 3679622 R TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: cps:CPS_1501 flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex subunit FliE complement(3679281..3679622) Pseudoalteromonas atlantica T6c 4174820 YP_662609.1 CDS Patl_3049 NC_008228.1 3679949 3681292 R PFAM: response regulator receiver sigma-54 factor, interaction region helix-turn-helix, Fis-type; SMART: ATPase; KEGG: cps:CPS_1500 flagellar regulatory protein C; two component sigma-54 specific Fis family transcriptional regulator complement(3679949..3681292) Pseudoalteromonas atlantica T6c 4174821 YP_662610.1 CDS Patl_3050 NC_008228.1 3681297 3682493 R PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: pha:PSHAa0789 sensory box sensor histidine kinase in two-component regulatory system; histidine kinase complement(3681297..3682493) Pseudoalteromonas atlantica T6c 4174822 YP_662611.1 CDS Patl_3051 NC_008228.1 3682648 3684081 R PFAM: sigma-54 factor, interaction region helix-turn-helix, Fis-type ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: pha:PSHAa0787 flagellar regulatory protein A (polar flagellae); sigma-54 dependent trancsriptional regulator complement(3682648..3684081) Pseudoalteromonas atlantica T6c 4174823 YP_662612.1 CDS Patl_3052 NC_008228.1 3684334 3685137 R PFAM: flagellin-like; KEGG: pha:PSHAa0781 flagellin; flagellin-like protein complement(3684334..3685137) Pseudoalteromonas atlantica T6c 4174824 YP_662613.1 CDS Patl_3053 NC_008228.1 3685539 3689078 D PFAM: protein of unknown function DUF115; KEGG: hch:HCH_04821 hypothetical protein; hypothetical protein 3685539..3689078 Pseudoalteromonas atlantica T6c 4174825 YP_662614.1 CDS Patl_3054 NC_008228.1 3689153 3689950 D hypothetical protein 3689153..3689950 Pseudoalteromonas atlantica T6c 4174826 YP_662615.1 CDS Patl_3055 NC_008228.1 3689985 3690764 R PFAM: Cephalosporin hydroxylase; KEGG: sme:SMb21425 hypothetical protein; cephalosporin hydroxylase complement(3689985..3690764) Pseudoalteromonas atlantica T6c 4174827 YP_662616.1 CDS Patl_3056 NC_008228.1 3690757 3691467 R KEGG: mhu:Mhun_3120 hypothetical protein; hypothetical protein complement(3690757..3691467) Pseudoalteromonas atlantica T6c 4174828 YP_662617.1 CDS Patl_3057 NC_008228.1 3691468 3692163 R PFAM: formyl transferase-like; KEGG: sye:Syncc9902_1100 phosphoribosylglycinamide formyltransferase; formyl transferase-like protein complement(3691468..3692163) Pseudoalteromonas atlantica T6c 4174829 YP_662618.1 CDS Patl_3058 NC_008228.1 3692166 3692792 R PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: bte:BTH_I3213 hypothetical protein; type 12 methyltransferase complement(3692166..3692792) Pseudoalteromonas atlantica T6c 4174830 YP_662619.1 CDS Patl_3059 NC_008228.1 3692981 3694093 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: syn:slr1615 perosamine synthetase; DegT/DnrJ/EryC1/StrS aminotransferase complement(3692981..3694093) Pseudoalteromonas atlantica T6c 4174831 YP_662620.1 CDS Patl_3060 NC_008228.1 3694090 3695310 R PFAM: Methyltransferase type 11 Methyltransferase type 12 Methyltransferase hyptothetical C-methyltransferase; KEGG: syn:slr1610 hypothetical protein; C-methyltransferase complement(3694090..3695310) Pseudoalteromonas atlantica T6c 4174832 YP_662621.1 CDS Patl_3061 NC_008228.1 3695307 3695870 R PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; KEGG: syn:slr0985 dTDP-4-dehydrorhamnose 3,5-epimerase; dTDP-4-dehydrorhamnose 3,5-epimerase complement(3695307..3695870) Pseudoalteromonas atlantica T6c 4174833 YP_662622.1 CDS Patl_3062 NC_008228.1 3695867 3696925 R TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: syn:slr0984 CDP-glucose 4,6-dehydratase; CDP-glucose 4,6-dehydratase complement(3695867..3696925) Pseudoalteromonas atlantica T6c 4174834 YP_662623.1 CDS Patl_3063 NC_008228.1 3696925 3697692 R TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: syn:slr0983 alpha-D-glucose-1-phosphate cytidylyltransferase; glucose-1-phosphate cytidylyltransferase complement(3696925..3697692) Pseudoalteromonas atlantica T6c 4174835 YP_662624.1 CDS Patl_3064 NC_008228.1 3697689 3699005 R PFAM: glycosyl transferase, family 2; KEGG: syn:slr1063 hypothetical protein; glycosyl transferase family protein complement(3697689..3699005) Pseudoalteromonas atlantica T6c 4174836 YP_662625.1 CDS Patl_3065 NC_008228.1 3699060 3699929 R PFAM: glycosyl transferase, family 2; KEGG: cpe:CPE0501 capsular polysaccharide biosynthsis protein; glycosyl transferase family protein complement(3699060..3699929) Pseudoalteromonas atlantica T6c 4174837 YP_662626.1 CDS Patl_3066 NC_008228.1 3700069 3701277 R PFAM: glycosyl transferase, family 2; KEGG: pho:PH0430 hypothetical protein; glycosyl transferase family protein complement(3700069..3701277) Pseudoalteromonas atlantica T6c 4174838 YP_662627.1 CDS Patl_3067 NC_008228.1 3701279 3702388 R PFAM: UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: pfl:PFL_3447 hypothetical protein; type 11 methyltransferase complement(3701279..3702388) Pseudoalteromonas atlantica T6c 4174839 YP_662628.1 CDS Patl_3068 NC_008228.1 3702385 3703686 R PFAM: Capsule polysaccharide biosynthesis; KEGG: tcx:Tcr_1514 capsule polysaccharide biosynthesis; capsule polysaccharide biosynthesis complement(3702385..3703686) Pseudoalteromonas atlantica T6c 4174840 YP_662629.1 CDS Patl_3069 NC_008228.1 3703688 3704863 R PFAM: UDP-galactopyranose mutase; KEGG: gka:GK3316 UDP-galactopyranose mutase; UDP-galactopyranose mutase complement(3703688..3704863) Pseudoalteromonas atlantica T6c 4174841 YP_662630.1 CDS Patl_3070 NC_008228.1 3704864 3705817 R PFAM: glycosyl transferase, family 2; KEGG: ftu:FTT1452c glycosyltransferase; glycosyl transferase family protein complement(3704864..3705817) Pseudoalteromonas atlantica T6c 4174842 YP_662631.1 CDS Patl_3071 NC_008228.1 3705903 3706628 R PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: rpa:RPA4596 putative 3-oxoacyl-acyl carrier protein reductase; short-chain dehydrogenase/reductase SDR complement(3705903..3706628) Pseudoalteromonas atlantica T6c 4174843 YP_662632.1 CDS Patl_3072 NC_008228.1 3706621 3707967 R KEGG: bja:bll7783 hypothetical protein; hypothetical protein complement(3706621..3707967) Pseudoalteromonas atlantica T6c 4174844 YP_662633.1 CDS Patl_3073 NC_008228.1 3707967 3708227 R KEGG: bja:bsr6286 hypothetical protein; hypothetical protein complement(3707967..3708227) Pseudoalteromonas atlantica T6c 4174845 YP_662634.1 CDS Patl_3074 NC_008228.1 3708230 3708835 R KEGG: ccr:CC1456 flagellin modification protein FlmH; hypothetical protein complement(3708230..3708835) Pseudoalteromonas atlantica T6c 4174846 YP_662635.1 CDS Patl_3075 NC_008228.1 3708832 3709953 R KEGG: cac:CAC2186 glycosyltransferase; spore coat polysaccharide biosynthesis protein glycosyltransferase-like protein complement(3708832..3709953) Pseudoalteromonas atlantica T6c 4174847 YP_662636.1 CDS Patl_3076 NC_008228.1 3709943 3711010 R PFAM: N-acetylneuraminic acid synthase-like; KEGG: pfl:PFL_1625 NeuB family protein; N-acylneuraminate-9-phosphate synthase complement(3709943..3711010) Pseudoalteromonas atlantica T6c 4174848 YP_662637.1 CDS Patl_3077 NC_008228.1 3711049 3712125 R hypothetical protein complement(3711049..3712125) Pseudoalteromonas atlantica T6c 4174849 YP_662638.1 CDS Patl_3078 NC_008228.1 3712127 3712828 R PFAM: acylneuraminate cytidylyltransferase; KEGG: ppr:PBPRA2709 putative NeuA; acylneuraminate cytidylyltransferase complement(3712127..3712828) Pseudoalteromonas atlantica T6c 4174850 YP_662639.1 CDS Patl_3079 NC_008228.1 3712839 3713975 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: pfo:Pfl_1519 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase complement(3712839..3713975) Pseudoalteromonas atlantica T6c 4174851 YP_662640.1 CDS Patl_3080 NC_008228.1 3713984 3714982 R PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: son:SO3271 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein CapD complement(3713984..3714982) Pseudoalteromonas atlantica T6c 4174852 YP_662641.1 CDS Patl_3081 NC_008228.1 3715114 3715422 R hypothetical protein complement(3715114..3715422) Pseudoalteromonas atlantica T6c 4174853 YP_662642.1 CDS Patl_3082 NC_008228.1 3715419 3715850 R PFAM: flagellar protein FliS; KEGG: ilo:IL1133 flagellin-specific chaperone FliS; flagellar protein FliS complement(3715419..3715850) Pseudoalteromonas atlantica T6c 4174854 YP_662643.1 CDS Patl_3083 NC_008228.1 3715870 3717330 R PFAM: flagellar hook-associated protein 2-like flagellar hook-associated 2-like flagellin hook IN; KEGG: ilo:IL1134 flagellar capping protein; flagellar hook-associated 2-like protein complement(3715870..3717330) Pseudoalteromonas atlantica T6c 4174855 YP_662644.1 CDS Patl_3084 NC_008228.1 3717355 3717795 R PFAM: flagellar protein FlaG protein; KEGG: ppr:PBPRA0914 hypothetical flagellin FlaG; flagellar protein FlaG protein complement(3717355..3717795) Pseudoalteromonas atlantica T6c 4174856 YP_662645.1 CDS Patl_3085 NC_008228.1 3717919 3718743 R PFAM: flagellin-like; KEGG: pha:PSHAa0781 flagellin; flagellin-like protein complement(3717919..3718743) Pseudoalteromonas atlantica T6c 4174857 YP_662646.1 CDS Patl_3086 NC_008228.1 3718777 3719160 D hypothetical protein 3718777..3719160 Pseudoalteromonas atlantica T6c 4174858 YP_662647.1 CDS Patl_3087 NC_008228.1 3720147 3720977 R PFAM: flagellin-like; KEGG: pha:PSHAa0781 flagellin; flagellin-like protein complement(3720147..3720977) Pseudoalteromonas atlantica T6c 4174859 YP_662648.1 CDS Patl_3088 NC_008228.1 3721373 3722197 R PFAM: flagellin-like; KEGG: pha:PSHAa0781 flagellin; flagellin-like protein complement(3721373..3722197) Pseudoalteromonas atlantica T6c 4174860 YP_662649.1 CDS Patl_3089 NC_008228.1 3722422 3723393 D KEGG: rba:RB12630 hypothetical protein-signal peptide prediction; signal peptide prediction 3722422..3723393 Pseudoalteromonas atlantica T6c 4174861 YP_662650.1 CDS flgL NC_008228.1 3723453 3724679 R with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL complement(3723453..3724679) Pseudoalteromonas atlantica T6c 4174862 YP_662651.1 CDS Patl_3091 NC_008228.1 3724702 3726831 R TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein protein of unknown function DUF1078-like; KEGG: pha:PSHAa0778 flagellar hook-associated; flagellar hook-associated protein FlgK complement(3724702..3726831) Pseudoalteromonas atlantica T6c 4174863 YP_662652.1 CDS Patl_3092 NC_008228.1 3726859 3727668 R KEGG: pha:PSHAa0777 flagellar biosynthesis; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; flagellar rod assembly protein/muramidase FlgJ complement(3726859..3727668) Pseudoalteromonas atlantica T6c 4174864 YP_662653.1 CDS flgI NC_008228.1 3727859 3728971 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein complement(3727859..3728971) Pseudoalteromonas atlantica T6c 4174865 YP_662654.1 CDS flgH NC_008228.1 3728985 3729677 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein complement(3728985..3729677) Pseudoalteromonas atlantica T6c 4174866 YP_662655.1 CDS flgG NC_008228.1 3729677 3730465 R makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG complement(3729677..3730465) Pseudoalteromonas atlantica T6c 4174867 YP_662656.1 CDS Patl_3096 NC_008228.1 3730527 3731270 R TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein protein of unknown function DUF1078-like; KEGG: cps:CPS_1481 flagellar basal-body rod protein FlgF; flagellar basal-body rod protein FlgF complement(3730527..3731270) Pseudoalteromonas atlantica T6c 4174868 YP_662657.1 CDS flgE NC_008228.1 3731448 3732824 R the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE complement(3731448..3732824) Pseudoalteromonas atlantica T6c 4174869 YP_662658.1 CDS flgD NC_008228.1 3732839 3733525 R acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein complement(3732839..3733525) Pseudoalteromonas atlantica T6c 4174870 YP_662659.1 CDS Patl_3099 NC_008228.1 3733560 3733982 R TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein protein of unknown function DUF1078-like; KEGG: pha:PSHAa0770 flagellar biosynthesis; cell-proximal portion of basal-body rod; flagellar basal-body rod protein FlgC complement(3733560..3733982) Pseudoalteromonas atlantica T6c 4174871 YP_662660.1 CDS Patl_3100 NC_008228.1 3733982 3734383 R TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: ilo:IL1147 flagellar basal body protein; flagellar basal-body rod protein FlgB complement(3733982..3734383) Pseudoalteromonas atlantica T6c 4174872 YP_662661.1 CDS Patl_3101 NC_008228.1 3734476 3735312 R PFAM: MCP methyltransferase, CheR-type; KEGG: son:SO3251 chemotaxis protein methyltransferase CheR; chemotaxis protein CheR complement(3734476..3735312) Pseudoalteromonas atlantica T6c 4174873 YP_662662.1 CDS Patl_3102 NC_008228.1 3735329 3736249 R PFAM: response regulator receiver CheW-like protein; KEGG: pha:PSHAa0766 chemotaxis protein; response regulator receiver modulated CheW protein complement(3735329..3736249) Pseudoalteromonas atlantica T6c 4174874 YP_662663.1 CDS flgA NC_008228.1 3736403 3737113 D required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 3736403..3737113 Pseudoalteromonas atlantica T6c 4174875 YP_662664.1 CDS Patl_3104 NC_008228.1 3737242 3737568 D PFAM: Anti-sigma-28 factor, FlgM; KEGG: cps:CPS_1472 negative regulator of flagellin synthesis FlgM; anti-sigma-28 factor FlgM 3737242..3737568 Pseudoalteromonas atlantica T6c 4174876 YP_662665.1 CDS Patl_3105 NC_008228.1 3737612 3738040 D PFAM: FlgN; KEGG: cps:CPS_1471 putative flagellar protein FlgN; FlgN protein 3737612..3738040 Pseudoalteromonas atlantica T6c 4174877 YP_662666.1 CDS Patl_3106 NC_008228.1 3738337 3738804 R PFAM: protein of unknown function DUF400; KEGG: pha:PSHAa0762 hypothetical protein; hypothetical protein complement(3738337..3738804) Pseudoalteromonas atlantica T6c 4174878 YP_662667.1 CDS Patl_3107 NC_008228.1 3739147 3740253 D KEGG: cps:CPS_1468 putative lipoprotein; putative lipoprotein 3739147..3740253 Pseudoalteromonas atlantica T6c 4174879 YP_662668.1 CDS Patl_3108 NC_008228.1 3740624 3741580 R KEGG: nfa:nfa20300 hypothetical protein; hypothetical protein complement(3740624..3741580) Pseudoalteromonas atlantica T6c 4174881 YP_662669.1 CDS Patl_3109 NC_008228.1 3742197 3744413 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: eli:ELI_04405 putative outer membrane receptor protein; TonB-dependent receptor 3742197..3744413 Pseudoalteromonas atlantica T6c 4174882 YP_662670.1 CDS Patl_3110 NC_008228.1 3744696 3745529 D KEGG: sso:SSO1256 microtubule binding protein, putative; hypothetical protein 3744696..3745529 Pseudoalteromonas atlantica T6c 4174883 YP_662671.1 CDS Patl_3111 NC_008228.1 3745648 3747549 R PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: cps:CPS_3470 neutral zinc metallopeptidase, M1 family; peptidase M1, membrane alanine aminopeptidase complement(3745648..3747549) Pseudoalteromonas atlantica T6c 4174884 YP_662672.1 CDS Patl_3112 NC_008228.1 3747724 3748308 D PFAM: Smr protein/MutS2; KEGG: son:SO2495 Smr domain protein; Smr protein/MutS2 3747724..3748308 Pseudoalteromonas atlantica T6c 4174885 YP_662673.1 CDS Patl_3113 NC_008228.1 3748949 3752836 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(3748949..3752836) Pseudoalteromonas atlantica T6c 4174886 YP_662674.1 CDS Patl_3114 NC_008228.1 3753171 3754742 D PFAM: extracellular solute-binding protein, family 3 Lytic transglycosylase, catalytic; KEGG: cps:CPS_3674 transglycosylase, SLT family; lytic transglycosylase catalytic subunit 3753171..3754742 Pseudoalteromonas atlantica T6c 4174887 YP_662675.1 CDS Patl_3115 NC_008228.1 3755301 3755789 R PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: pha:PSHAa2333 tRNA-specific adenosine deaminase; zinc-binding CMP/dCMP deaminase complement(3755301..3755789) Pseudoalteromonas atlantica T6c 4174888 YP_662676.1 CDS Patl_3116 NC_008228.1 3755996 3756229 D hypothetical protein 3755996..3756229 Pseudoalteromonas atlantica T6c 4174889 YP_662677.1 CDS Patl_3117 NC_008228.1 3756309 3757436 R KEGG: vch:VCA0921 hypothetical protein; hypothetical protein complement(3756309..3757436) Pseudoalteromonas atlantica T6c 4174890 YP_662678.1 CDS Patl_3118 NC_008228.1 3757574 3758107 R PFAM: YaeQ; KEGG: dps:DP1290 hypothetical protein; YaeQ protein complement(3757574..3758107) Pseudoalteromonas atlantica T6c 4174891 YP_662679.1 CDS guaA NC_008228.1 3758182 3759759 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(3758182..3759759) Pseudoalteromonas atlantica T6c 4174892 YP_662680.1 CDS Patl_3120 NC_008228.1 3759837 3761306 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(3759837..3761306) Pseudoalteromonas atlantica T6c 4174893 YP_662681.1 CDS Patl_3121 NC_008228.1 3761410 3762744 D KEGG: vpa:VP0615 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit nucleic acid binding, OB-fold, tRNA/helicase-type; exodeoxyribonuclease VII large subunit 3761410..3762744 Pseudoalteromonas atlantica T6c 4174894 YP_662682.1 CDS engA NC_008228.1 3762867 3764315 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(3762867..3764315) Pseudoalteromonas atlantica T6c 4174895 YP_662683.1 CDS Patl_3123 NC_008228.1 3764403 3765650 R with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL complement(3764403..3765650) Pseudoalteromonas atlantica T6c 4174896 YP_662684.1 CDS Patl_3124 NC_008228.1 3765643 3766266 R KEGG: pha:PSHAb0136 putative membrane-associated protein with TPR-like domain; TPR-like domain-containing protein complement(3765643..3766266) Pseudoalteromonas atlantica T6c 4174897 YP_662685.1 CDS hisS NC_008228.1 3766334 3767614 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(3766334..3767614) Pseudoalteromonas atlantica T6c 4174898 YP_662686.1 CDS Patl_3126 NC_008228.1 3767728 3768846 R KEGG: vch:VC0759 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG protein; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase complement(3767728..3768846) Pseudoalteromonas atlantica T6c 4174899 YP_662687.1 CDS Patl_3127 NC_008228.1 3768925 3769962 R SMART: Helix-turn-helix type 3; KEGG: ilo:IL2035 predicted transcriptional regulator, contains N-terminal xre-type HTH domain; XRE family transcriptional regulator complement(3768925..3769962) Pseudoalteromonas atlantica T6c 4174900 YP_662688.1 CDS Patl_3128 NC_008228.1 3769999 3770997 R KEGG: son:SO3314 fimbrial biogenesis and twitching motility protein, putative; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat Peptidoglycan-binding LysM Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; type IV pilus biogenesis/stability protein PilW complement(3769999..3770997) Pseudoalteromonas atlantica T6c 4174901 YP_662689.1 CDS Patl_3129 NC_008228.1 3771009 3772151 R 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N complement(3771009..3772151) Pseudoalteromonas atlantica T6c 4174902 YP_662690.1 CDS ndk NC_008228.1 3772284 3772715 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(3772284..3772715) Pseudoalteromonas atlantica T6c 4174903 YP_662691.1 CDS Patl_3131 NC_008228.1 3772931 3773104 D KEGG: ilo:IL1733 predicted membrane protein; membrane protein 3772931..3773104 Pseudoalteromonas atlantica T6c 4174904 YP_662692.1 CDS Patl_3132 NC_008228.1 3773178 3775061 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO1798 peptidyl-prolyl cis-trans isomerase D; PpiC-type peptidyl-prolyl cis-trans isomerase complement(3773178..3775061) Pseudoalteromonas atlantica T6c 4174905 YP_662693.1 CDS Patl_3133 NC_008228.1 3775231 3775503 R PFAM: histone-like DNA-binding protein; KEGG: ilo:IL1002 bacterial nucleoid DNA-binding protein HU-beta; histone-like DNA-binding protein complement(3775231..3775503) Pseudoalteromonas atlantica T6c 4174906 YP_662694.1 CDS Patl_3134 NC_008228.1 3775742 3778108 R KEGG: pha:PSHAa2060 DNA-binding ATP-dependent protease La; heat shock K-protein; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon-like AAA ATPase, central region ATPase associated with various cellular activities, AAA_5; SMART: ATPase; ATP-dependent protease La complement(3775742..3778108) Pseudoalteromonas atlantica T6c 4174907 YP_662695.1 CDS clpX NC_008228.1 3778354 3779631 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(3778354..3779631) Pseudoalteromonas atlantica T6c 4174908 YP_662696.1 CDS clpP NC_008228.1 3779722 3780360 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(3779722..3780360) Pseudoalteromonas atlantica T6c 4174909 YP_662697.1 CDS tig NC_008228.1 3780448 3781758 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(3780448..3781758) Pseudoalteromonas atlantica T6c 4174910 YP_662698.1 CDS Patl_3138 NC_008228.1 3782671 3783303 R KEGG: ppr:PBPRA0653 hypothetical protein; hypothetical protein complement(3782671..3783303) Pseudoalteromonas atlantica T6c 4174915 YP_662699.1 CDS Patl_3139 NC_008228.1 3783473 3784330 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 3783473..3784330 Pseudoalteromonas atlantica T6c 4174916 YP_662700.1 CDS Patl_3140 NC_008228.1 3784347 3784907 D PFAM: protein of unknown function DUF1415; KEGG: ilo:IL2495 hypothetical protein; hypothetical protein 3784347..3784907 Pseudoalteromonas atlantica T6c 4174917 YP_662701.1 CDS Patl_3141 NC_008228.1 3784956 3785996 R KEGG: mca:MCA1564 hypothetical protein; hypothetical protein complement(3784956..3785996) Pseudoalteromonas atlantica T6c 4174918 YP_662702.1 CDS Patl_3142 NC_008228.1 3785993 3787873 R KEGG: mca:MCA1563 hypothetical protein; hypothetical protein complement(3785993..3787873) Pseudoalteromonas atlantica T6c 4174919 YP_662703.1 CDS Patl_3143 NC_008228.1 3787876 3788610 R PFAM: ABC-2 type transporter; KEGG: pae:PA3671 putative ABC-2 type transport system permease protein; ABC transporter complement(3787876..3788610) Pseudoalteromonas atlantica T6c 4174920 YP_662704.1 CDS Patl_3144 NC_008228.1 3788613 3789533 R PFAM: ABC transporter related; SMART: ATPase; KEGG: pae:PA3672 putative ABC-2 type transport system ATP-binding protein; ABC transporter-like protein complement(3788613..3789533) Pseudoalteromonas atlantica T6c 4174921 YP_662705.1 CDS Patl_3145 NC_008228.1 3789674 3790387 D KEGG: ilo:IL1877 uncharacterized conserved membrane protein, smp family; hypothetical protein 3789674..3790387 Pseudoalteromonas atlantica T6c 4174922 YP_662706.1 CDS Patl_3146 NC_008228.1 3790384 3791154 R PFAM: TatD-related deoxyribonuclease; KEGG: ilo:IL1878 Mg-dependent DNase homolog; TatD-related deoxyribonuclease complement(3790384..3791154) Pseudoalteromonas atlantica T6c 4174923 YP_662707.1 CDS Patl_3147 NC_008228.1 3791167 3791808 R KEGG: pha:PSHAa0658 pyridoxine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase complement(3791167..3791808) Pseudoalteromonas atlantica T6c 4174924 YP_662708.1 CDS Patl_3148 NC_008228.1 3791886 3792788 R TIGRFAM: small GTP-binding protein GTP-binding GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related KH, type 2; KEGG: pha:PSHAa0733 GTP-binding protein era; GTP-binding protein Era complement(3791886..3792788) Pseudoalteromonas atlantica T6c 4174925 YP_662709.1 CDS Patl_3149 NC_008228.1 3792781 3793464 R PFAM: ribonuclease III double-stranded RNA binding; KEGG: cps:CPS_4122 ribonuclease III; ribonuclease III complement(3792781..3793464) Pseudoalteromonas atlantica T6c 4174926 YP_662710.1 CDS Patl_3150 NC_008228.1 3793465 3794370 R KEGG: ilo:IL0811 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I complement(3793465..3794370) Pseudoalteromonas atlantica T6c 4174927 YP_662711.1 CDS Patl_3151 NC_008228.1 3794371 3796167 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(3794371..3796167) Pseudoalteromonas atlantica T6c 4174928 YP_662712.1 CDS Patl_3152 NC_008228.1 3796351 3796854 R PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: vpa:VP2575 sigma-E factor regulatory protein RseC; sigma E positive regulator RseC/MucC complement(3796351..3796854) Pseudoalteromonas atlantica T6c 4174929 YP_662713.1 CDS Patl_3153 NC_008228.1 3796856 3797857 R PFAM: MucB/RseB; KEGG: cps:CPS_4127 sigma-E factor regulatory protein RseB; sigma E regulatory protein MucB/RseB complement(3796856..3797857) Pseudoalteromonas atlantica T6c 4174930 YP_662714.1 CDS Patl_3154 NC_008228.1 3797898 3798500 R KEGG: son:SO1343 sigma-E factor negative regulatory protein; sigma-E factor negative regulatory protein complement(3797898..3798500) Pseudoalteromonas atlantica T6c 4174931 YP_662715.1 CDS Patl_3155 NC_008228.1 3798637 3799215 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(3798637..3799215) Pseudoalteromonas atlantica T6c 4174932 YP_662716.1 CDS Patl_3156 NC_008228.1 3799456 3801060 D KEGG: vpa:VP2580 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like FAD dependent oxidoreductase; L-aspartate oxidase 3799456..3801060 Pseudoalteromonas atlantica T6c 4174933 YP_662717.1 CDS Patl_3157 NC_008228.1 3801063 3802025 R PFAM: MaoC-like dehydratase; KEGG: son:SO0559 MaoC domain protein; MaoC-like dehydratase complement(3801063..3802025) Pseudoalteromonas atlantica T6c 4174934 YP_662718.1 CDS Patl_3158 NC_008228.1 3802048 3802467 R hypothetical protein complement(3802048..3802467) Pseudoalteromonas atlantica T6c 4174935 YP_662719.1 CDS Patl_3159 NC_008228.1 3802490 3802741 R PFAM: protein of unknown function DUF339; KEGG: ilo:IL0819 hypothetical protein; hypothetical protein complement(3802490..3802741) Pseudoalteromonas atlantica T6c 4174936 YP_662720.1 CDS Patl_3160 NC_008228.1 3802899 3803858 D PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: ppr:PBPRA3100 hypothetical protein; glycine cleavage T protein (aminomethyl transferase) 3802899..3803858 Pseudoalteromonas atlantica T6c 4174937 YP_662721.1 CDS Patl_3161 NC_008228.1 3803927 3804412 D PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pha:PSHAa0721 FKBP-type peptidyl prolyl cis-trans isomerase (rotamase); FKBP-type peptidylprolyl isomerase 3803927..3804412 Pseudoalteromonas atlantica T6c 4174938 YP_662722.1 CDS Patl_3162 NC_008228.1 3804517 3804855 R PFAM: nitrogen regulatory protein P-II; KEGG: ilo:IL1185 nitrogen regulatory protein PII; nitrogen regulatory protein P-II complement(3804517..3804855) Pseudoalteromonas atlantica T6c 4174939 YP_662723.1 CDS nadE NC_008228.1 3804880 3805710 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(3804880..3805710) Pseudoalteromonas atlantica T6c 4174940 YP_662724.1 CDS Patl_3164 NC_008228.1 3805809 3807473 R TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: tbd:Tbd_1861 hypothetical protein; prepilin-type cleavage/methylation-like protein complement(3805809..3807473) Pseudoalteromonas atlantica T6c 4174941 YP_662725.1 CDS Patl_3165 NC_008228.1 3807474 3808610 R KEGG: tbd:Tbd_1862 hypothetical protein; hypothetical protein complement(3807474..3808610) Pseudoalteromonas atlantica T6c 4174942 YP_662726.1 CDS Patl_3166 NC_008228.1 3808600 3809232 R TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: eba:ebA5111 hypothetical protein; prepilin-type cleavage/methylation-like protein complement(3808600..3809232) Pseudoalteromonas atlantica T6c 4174943 YP_662727.1 CDS Patl_3167 NC_008228.1 3809226 3809687 R KEGG: eba:ebA5112 fimbrial protein pilin similar to FimU; hypothetical protein complement(3809226..3809687) Pseudoalteromonas atlantica T6c 4174944 YP_662728.1 CDS Patl_3168 NC_008228.1 3809971 3810363 D PFAM: methylation; KEGG: tbd:Tbd_1865 pilus assembly protein; prepilin-type cleavage/methylation protein 3809971..3810363 Pseudoalteromonas atlantica T6c 4174945 YP_662729.1 CDS Patl_3169 NC_008228.1 3810459 3811031 D PFAM: methylation; KEGG: xoo:XOO3202 pre-pilin like leader sequence; prepilin-type cleavage/methylation protein 3810459..3811031 Pseudoalteromonas atlantica T6c 4174946 YP_662730.1 CDS Patl_3170 NC_008228.1 3811056 3811523 R PFAM: methylation; KEGG: noc:Noc_2275 general secretion pathway protein H; prepilin-type cleavage/methylation protein complement(3811056..3811523) Pseudoalteromonas atlantica T6c 4174947 YP_662731.1 CDS Patl_3171 NC_008228.1 3811531 3815625 R KEGG: son:SO3525 type IV pilin biogenesis protein, putative; Tfp pilus assembly protein tip-associated adhesin PilY1-like protein complement(3811531..3815625) Pseudoalteromonas atlantica T6c 4174948 YP_662732.1 CDS Patl_3172 NC_008228.1 3815622 3816224 R hypothetical protein complement(3815622..3816224) Pseudoalteromonas atlantica T6c 4174949 YP_662733.1 CDS Patl_3173 NC_008228.1 3816221 3817087 R TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: reu:Reut_A0785 putative Tfp pilus assembly protein PilW; prepilin-type cleavage/methylation-like protein complement(3816221..3817087) Pseudoalteromonas atlantica T6c 4174950 YP_662734.1 CDS Patl_3174 NC_008228.1 3817099 3817674 R hypothetical protein complement(3817099..3817674) Pseudoalteromonas atlantica T6c 4174951 YP_662735.1 CDS ispH NC_008228.1 3817973 3818917 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(3817973..3818917) Pseudoalteromonas atlantica T6c 4174952 YP_662736.1 CDS Patl_3176 NC_008228.1 3818963 3819406 R PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pha:PSHAa0920 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase); FKBP-type peptidylprolyl isomerase complement(3818963..3819406) Pseudoalteromonas atlantica T6c 4174953 YP_662737.1 CDS lspA NC_008228.1 3819399 3819893 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(3819399..3819893) Pseudoalteromonas atlantica T6c 4174954 YP_662738.1 CDS Patl_3178 NC_008228.1 3819886 3822714 R TIGRFAM: isoleucyl-tRNA synthetase; KEGG: vvy:VV0687 isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase complement(3819886..3822714) Pseudoalteromonas atlantica T6c 4174955 YP_662739.1 CDS Patl_3179 NC_008228.1 3822756 3823682 R TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: vpa:VP0533 riboflavin kinase/FMN adenylyltransferase; riboflavin biosynthesis protein RibF complement(3822756..3823682) Pseudoalteromonas atlantica T6c 4174956 YP_662740.1 CDS Patl_3180 NC_008228.1 3823878 3825449 R TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN-like; KEGG: son:SO3534 MviN protein; integral membrane protein MviN complement(3823878..3825449) Pseudoalteromonas atlantica T6c 4174957 YP_662741.1 CDS rpsT NC_008228.1 3825927 3826190 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 3825927..3826190 Pseudoalteromonas atlantica T6c 4174958 YP_662742.1 CDS Patl_3182 NC_008228.1 3826705 3828123 D PFAM: peptidase M20 protease-associated PA peptidase M28; KEGG: son:SO3539 peptidase, M28D family; peptidase M28 3826705..3828123 Pseudoalteromonas atlantica T6c 4174959 YP_662743.1 CDS Patl_3183 NC_008228.1 3828225 3828671 R PFAM: flavodoxin/nitric oxide synthase; KEGG: ppr:PBPRA2972 hypothetical protein; flavodoxin/nitric oxide synthase complement(3828225..3828671) Pseudoalteromonas atlantica T6c 4174960 YP_662744.1 CDS Patl_3184 NC_008228.1 3828705 3829463 R PFAM: pseudouridine synthase; KEGG: vfi:VF0613 tRNA pseudouridine synthase C; pseudouridylate synthase complement(3828705..3829463) Pseudoalteromonas atlantica T6c 4174961 YP_662745.1 CDS Patl_3185 NC_008228.1 3829463 3829819 R KEGG: cps:CPS_3650 hypothetical protein; hypothetical protein complement(3829463..3829819) Pseudoalteromonas atlantica T6c 4174962 YP_662746.1 CDS Patl_3186 NC_008228.1 3829879 3830904 D KEGG: pha:PSHAa1972 hypothetical protein; hypothetical protein 3829879..3830904 Pseudoalteromonas atlantica T6c 4174963 YP_662747.1 CDS Patl_3187 NC_008228.1 3830901 3831206 D KEGG: ilo:IL0852 hypothetical protein; hypothetical protein 3830901..3831206 Pseudoalteromonas atlantica T6c 4174964 YP_662748.1 CDS Patl_3188 NC_008228.1 3832165 3832809 R KEGG: cps:CPS_3529 hypothetical protein; hypothetical protein complement(3832165..3832809) Pseudoalteromonas atlantica T6c 4174965 YP_662749.1 CDS Patl_3189 NC_008228.1 3832923 3833153 D KEGG: pfo:Pfl_0169 hypothetical protein; hypothetical protein 3832923..3833153 Pseudoalteromonas atlantica T6c 4174966 YP_662750.1 CDS Patl_3190 NC_008228.1 3833229 3833597 R KEGG: son:SO1612 hypothetical protein; hypothetical protein complement(3833229..3833597) Pseudoalteromonas atlantica T6c 4174967 YP_662751.1 CDS Patl_3191 NC_008228.1 3833788 3834078 D hypothetical protein 3833788..3834078 Pseudoalteromonas atlantica T6c 4174968 YP_662752.1 CDS Patl_3192 NC_008228.1 3834083 3834643 R putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd complement(3834083..3834643) Pseudoalteromonas atlantica T6c 4174969 YP_662753.1 CDS queF NC_008228.1 3834770 3835609 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3834770..3835609 Pseudoalteromonas atlantica T6c 4174970 YP_662754.1 CDS Patl_3194 NC_008228.1 3835682 3837037 D PFAM: conserved hypothetical protein 730; KEGG: cps:CPS_3537 lysine decarboxylase family protein; hypothetical protein 3835682..3837037 Pseudoalteromonas atlantica T6c 4174971 YP_662755.1 CDS Patl_3195 NC_008228.1 3837125 3837499 D KEGG: ilo:IL0859 SmpA/OmlA family lipoprotein; SmpA/OmlA family lipoprotein 3837125..3837499 Pseudoalteromonas atlantica T6c 4174972 YP_662756.1 CDS Patl_3196 NC_008228.1 3837514 3839271 D putative signal transduction protein 3837514..3839271 Pseudoalteromonas atlantica T6c 4174973 YP_662757.1 CDS Patl_3197 NC_008228.1 3839447 3840454 D catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 3839447..3840454 Pseudoalteromonas atlantica T6c 4174974 YP_662758.1 CDS Patl_3198 NC_008228.1 3840613 3840921 D KEGG: pha:PSHAa0835 competence protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding, class 1; helix-hairpin-helix repeat-containing competence protein ComEA 3840613..3840921 Pseudoalteromonas atlantica T6c 4174975 YP_662759.1 CDS Patl_3199 NC_008228.1 3841002 3841895 R KEGG: ppr:PBPRA2674 putative UTP-glucose-1-phosphateuridylyltransferase, galU; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase complement(3841002..3841895) Pseudoalteromonas atlantica T6c 4174976 YP_662760.1 CDS Patl_3200 NC_008228.1 3841897 3843237 R PFAM: UDP-glucose/GDP-mannose dehydrogenase NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: hch:HCH_04682 UDP-glucose dehydrogenase; UDP-glucose 6-dehydrogenase complement(3841897..3843237) Pseudoalteromonas atlantica T6c 4174977 YP_662761.1 CDS Patl_3201 NC_008228.1 3843668 3844024 D KEGG: ilo:IL0566 hypothetical protein; hypothetical protein 3843668..3844024 Pseudoalteromonas atlantica T6c 4174978 YP_662762.1 CDS Patl_3202 NC_008228.1 3844112 3844786 D KEGG: sdy:SDY_0962 putative regulator; hypothetical protein 3844112..3844786 Pseudoalteromonas atlantica T6c 4174979 YP_662763.1 CDS Patl_3203 NC_008228.1 3844805 3845548 D PFAM: protein of unknown function DUF1017; KEGG: son:SO3158 polysaccharide synthesis-related protein; hypothetical protein 3844805..3845548 Pseudoalteromonas atlantica T6c 4174980 YP_662764.1 CDS Patl_3204 NC_008228.1 3845545 3847674 D PFAM: protein of unknown function DUF940, membrane lipoprotein putative; KEGG: sfx:S3555 hypothetical protein; hypothetical protein 3845545..3847674 Pseudoalteromonas atlantica T6c 4174981 YP_662765.1 CDS Patl_3205 NC_008228.1 3847863 3848729 R KEGG: noc:Noc_2177 rhamnosyltransferase; rhamnosyltransferase complement(3847863..3848729) Pseudoalteromonas atlantica T6c 4174982 YP_662766.1 CDS Patl_3206 NC_008228.1 3848726 3849502 R KEGG: vfi:VF0175 glycosyltransferase; glycosyltransferase complement(3848726..3849502) Pseudoalteromonas atlantica T6c 4174983 YP_662767.1 CDS Patl_3207 NC_008228.1 3849839 3851569 R PFAM: glycosyl transferase, family 2; KEGG: pst:PSPTO1074 glycosyl transferase, group 2 family protein; glycosyl transferase family protein complement(3849839..3851569) Pseudoalteromonas atlantica T6c 4174984 YP_662768.1 CDS Patl_3208 NC_008228.1 3851639 3852736 R hypothetical protein complement(3851639..3852736) Pseudoalteromonas atlantica T6c 4174985 YP_662769.1 CDS Patl_3209 NC_008228.1 3852928 3854097 R KEGG: mca:MCA0624 hypothetical protein; hypothetical protein complement(3852928..3854097) Pseudoalteromonas atlantica T6c 4174986 YP_662770.1 CDS Patl_3210 NC_008228.1 3854192 3855277 R KEGG: syd:Syncc9605_2166 hypothetical protein; hypothetical protein complement(3854192..3855277) Pseudoalteromonas atlantica T6c 4174987 YP_662771.1 CDS Patl_3211 NC_008228.1 3855288 3855686 R TIGRFAM: cytidyltransferase-related domain; PFAM: Riboflavin kinase / FAD synthetase cytidylyltransferase; KEGG: cps:CPS_4205 glycerol-3-phosphate cytidyltransferase; cytidyltransferase-like protein complement(3855288..3855686) Pseudoalteromonas atlantica T6c 4174988 YP_662772.1 CDS Patl_3212 NC_008228.1 3855702 3856979 R PFAM: coagulation factor 5/8 type-like; KEGG: jan:Jann_0820 hypothetical protein; coagulation factor 5/8 type-like protein complement(3855702..3856979) Pseudoalteromonas atlantica T6c 4174989 YP_662773.1 CDS Patl_3213 NC_008228.1 3857007 3858962 R KEGG: jan:Jann_0820 hypothetical protein; hypothetical protein complement(3857007..3858962) Pseudoalteromonas atlantica T6c 4174990 YP_662774.1 CDS Patl_3214 NC_008228.1 3859108 3860157 R hypothetical protein complement(3859108..3860157) Pseudoalteromonas atlantica T6c 4174991 YP_662775.1 CDS Patl_3215 NC_008228.1 3860382 3861755 R KEGG: psp:PSPPH_0971 hypothetical protein; hypothetical protein complement(3860382..3861755) Pseudoalteromonas atlantica T6c 4174992 YP_662776.1 CDS Patl_3216 NC_008228.1 3861801 3863045 R PFAM: glycosyl transferase, group 1; KEGG: sme:SMb21308 putative glycosyltransferase, forming alpha glycosyl linkages protein; group 1 glycosyl transferase complement(3861801..3863045) Pseudoalteromonas atlantica T6c 4174993 YP_662777.1 CDS Patl_3217 NC_008228.1 3863042 3864493 R PFAM: glycosyl transferase, family 2; KEGG: sme:SMb21313 putative bifunctional glycosyltransferase, forming alpha-glycosyl and beta-glycosyl linkages protein; glycosyl transferase family protein complement(3863042..3864493) Pseudoalteromonas atlantica T6c 4174994 YP_662778.1 CDS Patl_3218 NC_008228.1 3864632 3867340 D PFAM: glycosyl transferase, family 2 glycosyl transferase, group 1; KEGG: xcc:XCC2933 glycosyl transferase; glycosyl transferase family protein 3864632..3867340 Pseudoalteromonas atlantica T6c 4174995 YP_662779.1 CDS Patl_3219 NC_008228.1 3867372 3868361 D hypothetical protein 3867372..3868361 Pseudoalteromonas atlantica T6c 4174996 YP_662780.1 CDS Patl_3220 NC_008228.1 3868384 3870405 R PFAM: glycosyl transferase, group 1; KEGG: rsp:RSP_3985 hypothetical protein; group 1 glycosyl transferase complement(3868384..3870405) Pseudoalteromonas atlantica T6c 4174997 YP_662781.1 CDS Patl_3221 NC_008228.1 3870405 3871286 R KEGG: sye:Syncc9902_0124 hypothetical protein; hypothetical protein complement(3870405..3871286) Pseudoalteromonas atlantica T6c 4174998 YP_662782.1 CDS Patl_3222 NC_008228.1 3871373 3872293 R hypothetical protein complement(3871373..3872293) Pseudoalteromonas atlantica T6c 4174999 YP_662783.1 CDS Patl_3223 NC_008228.1 3872446 3873228 D KEGG: sye:Syncc9902_0128 hypothetical protein; hypothetical protein 3872446..3873228 Pseudoalteromonas atlantica T6c 4175000 YP_662784.1 CDS Patl_3224 NC_008228.1 3873350 3874237 R hypothetical protein complement(3873350..3874237) Pseudoalteromonas atlantica T6c 4175001 YP_662785.1 CDS Patl_3225 NC_008228.1 3874320 3875657 R KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein; hypothetical protein complement(3874320..3875657) Pseudoalteromonas atlantica T6c 4175002 YP_662786.1 CDS Patl_3226 NC_008228.1 3876057 3877016 R hypothetical protein complement(3876057..3877016) Pseudoalteromonas atlantica T6c 4175003 YP_662787.1 CDS Patl_3227 NC_008228.1 3877013 3877666 R PFAM: methylation; prepilin-type cleavage/methylation protein complement(3877013..3877666) Pseudoalteromonas atlantica T6c 4175004 YP_662788.1 CDS Patl_3228 NC_008228.1 3877673 3878089 R PFAM: methylation; prepilin-type cleavage/methylation protein complement(3877673..3878089) Pseudoalteromonas atlantica T6c 4175005 YP_662789.1 CDS Patl_3229 NC_008228.1 3878076 3878504 R PFAM: methylation; prepilin-type cleavage/methylation protein complement(3878076..3878504) Pseudoalteromonas atlantica T6c 4175006 YP_662790.1 CDS Patl_3230 NC_008228.1 3878506 3878925 R TIGRFAM: general secretion pathway protein G; PFAM: methylation type II secretion system protein G; KEGG: pae:PA2675 probable type II secretion system protein; general secretion pathway protein G complement(3878506..3878925) Pseudoalteromonas atlantica T6c 4175007 YP_662791.1 CDS Patl_3231 NC_008228.1 3879049 3880239 R PFAM: type II secretion system protein; KEGG: pae:PA2676 probable type II secretion system protein; type II secretion system protein complement(3879049..3880239) Pseudoalteromonas atlantica T6c 4175008 YP_662792.1 CDS Patl_3232 NC_008228.1 3880236 3881873 R PFAM: type II secretion system protein E; SMART: ATPase; KEGG: pae:PA2677 probable type II secretion protein; type II secretion system protein E complement(3880236..3881873) Pseudoalteromonas atlantica T6c 4175009 YP_662793.1 CDS Patl_3233 NC_008228.1 3882081 3883031 D hypothetical protein 3882081..3883031 Pseudoalteromonas atlantica T6c 4175010 YP_662794.1 CDS Patl_3234 NC_008228.1 3883028 3883609 D hypothetical protein 3883028..3883609 Pseudoalteromonas atlantica T6c 4175011 YP_662795.1 CDS Patl_3235 NC_008228.1 3883602 3884063 D hypothetical protein 3883602..3884063 Pseudoalteromonas atlantica T6c 4175012 YP_662796.1 CDS Patl_3236 NC_008228.1 3884106 3886241 D PFAM: type II and III secretion system protein NolW-like; KEGG: pae:PA1382 probable type II secretion system protein; type II and III secretion system protein 3884106..3886241 Pseudoalteromonas atlantica T6c 4175013 YP_662797.1 CDS Patl_3237 NC_008228.1 3886380 3886871 R hypothetical protein complement(3886380..3886871) Pseudoalteromonas atlantica T6c 4175014 YP_662798.1 CDS Patl_3238 NC_008228.1 3887354 3888805 R PFAM: lipopolysaccharide biosynthesis; KEGG: ecc:c3687 kpsE; putative capsule polysaccharide export transport system permease protein; lipopolysaccharide biosynthesis protein complement(3887354..3888805) Pseudoalteromonas atlantica T6c 4175015 YP_662799.1 CDS Patl_3239 NC_008228.1 3888808 3889458 R PFAM: ABC transporter related; SMART: ATPase; KEGG: cjr:CJE1620 capsular polysaccharide ABC transporter, ATP-binding protein; ABC transporter-like protein complement(3888808..3889458) Pseudoalteromonas atlantica T6c 4175016 YP_662800.1 CDS Patl_3240 NC_008228.1 3889455 3890051 R PFAM: ABC-2 type transporter; KEGG: ecc:c3698 kpsM protein; ABC transporter complement(3889455..3890051) Pseudoalteromonas atlantica T6c 4175017 YP_662801.1 CDS Patl_3241 NC_008228.1 3890259 3892022 R PFAM: polysaccharide export protein; KEGG: dvu:DVU3140 capsular polysaccharide transport protein, putative; polysaccharide export protein complement(3890259..3892022) Pseudoalteromonas atlantica T6c 4175018 YP_662802.1 CDS Patl_3242 NC_008228.1 3892019 3892384 R hypothetical protein complement(3892019..3892384) Pseudoalteromonas atlantica T6c 4175019 YP_662803.1 CDS Patl_3243 NC_008228.1 3892486 3893550 R TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase, family 4; KEGG: cps:CPS_2091 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase complement(3892486..3893550) Pseudoalteromonas atlantica T6c 4175020 YP_662804.1 CDS Patl_3244 NC_008228.1 3894106 3895593 D TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region major facilitator superfamily MFS_1; KEGG: ilo:IL1430 dipeptide/tripeptide permease; amino acid/peptide transporter 3894106..3895593 Pseudoalteromonas atlantica T6c 4175021 YP_662805.1 CDS Patl_3245 NC_008228.1 3895730 3896029 D KEGG: ilo:IL1095 hypothetical protein; hypothetical protein 3895730..3896029 Pseudoalteromonas atlantica T6c 4175022 YP_662806.1 CDS Patl_3246 NC_008228.1 3896034 3897050 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: son:SO1664 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 3896034..3897050 Pseudoalteromonas atlantica T6c 4175023 YP_662807.1 CDS Patl_3247 NC_008228.1 3897176 3897943 R PFAM: VacJ-like lipoprotein; KEGG: cps:CPS_1530 VacJ lipoprotein; VacJ-like lipoprotein complement(3897176..3897943) Pseudoalteromonas atlantica T6c 4175024 YP_662808.1 CDS Patl_3248 NC_008228.1 3897940 3899241 R PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: pha:PSHAa0830 cytochrome c-type biogenesis protein; hypothetical protein complement(3897940..3899241) Pseudoalteromonas atlantica T6c 4175025 YP_662809.1 CDS Patl_3249 NC_008228.1 3899238 3899687 R PFAM: cytochrome C biogenesis protein; KEGG: pha:PSHAa0829 cytochrome c-type biogenesis protein CcmH; cytochrome C biogenesis protein complement(3899238..3899687) Pseudoalteromonas atlantica T6c 4175026 YP_662810.1 CDS Patl_3250 NC_008228.1 3899684 3900256 R TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin; KEGG: pha:PSHAa0828 thiol:disulfide interchange protein DsbE (cytochrome c biogenesis protein CcmG); periplasmic protein thiol--disulfide oxidoreductase DsbE complement(3899684..3900256) Pseudoalteromonas atlantica T6c 4175027 YP_662811.1 CDS Patl_3251 NC_008228.1 3900253 3902286 R TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: ilo:IL1101 cytochrome c biogenesis factor; cytochrome c-type biogenesis protein CcmF complement(3900253..3902286) Pseudoalteromonas atlantica T6c 4175028 YP_662812.1 CDS Patl_3252 NC_008228.1 3902288 3902782 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE complement(3902288..3902782) Pseudoalteromonas atlantica T6c 4175029 YP_662813.1 CDS Patl_3253 NC_008228.1 3902779 3903015 R PFAM: Heme exporter protein D (CcmD); KEGG: msu:MS0604 heme exporter protein D; heme exporter protein CcmD complement(3902779..3903015) Pseudoalteromonas atlantica T6c 4175030 YP_662814.1 CDS Patl_3254 NC_008228.1 3903019 3903765 R TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: vfi:VF1822 heme chaperone heme-lyase; heme exporter protein CcmC complement(3903019..3903765) Pseudoalteromonas atlantica T6c 4175031 YP_662815.1 CDS Patl_3255 NC_008228.1 3903765 3904433 R TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: son:SO0262 heme exporter protein CcmB; heme exporter protein CcmB complement(3903765..3904433) Pseudoalteromonas atlantica T6c 4175032 YP_662816.1 CDS Patl_3256 NC_008228.1 3904430 3904966 R TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; KEGG: pha:PSHAa0822 heme exporter protein A, ABC superfamily (cytochrome c-type biogenesis ATP-binding protein CcmA); heme exporter protein CcmA complement(3904430..3904966) Pseudoalteromonas atlantica T6c 4175033 YP_662817.1 CDS Patl_3257 NC_008228.1 3905693 3908299 D KEGG: sha:SH0326 hypothetical protein; hypothetical protein 3905693..3908299 Pseudoalteromonas atlantica T6c 4175034 YP_662818.1 CDS Patl_3258 NC_008228.1 3908331 3908663 D KEGG: son:SO3199 FlhB domain protein; FlhB domain-containing protein 3908331..3908663 Pseudoalteromonas atlantica T6c 4175035 YP_662819.1 CDS recA NC_008228.1 3908741 3909772 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(3908741..3909772) Pseudoalteromonas atlantica T6c 4175036 YP_662820.1 CDS Patl_3260 NC_008228.1 3910110 3910514 R PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: dde:Dde_3339 hypothetical protein; glutathione-dependent formaldehyde-activating protein complement(3910110..3910514) Pseudoalteromonas atlantica T6c 4175037 YP_662821.1 CDS Patl_3261 NC_008228.1 3910563 3910934 R KEGG: son:SO1590 hypothetical protein; hypothetical protein complement(3910563..3910934) Pseudoalteromonas atlantica T6c 4175038 YP_662822.1 CDS Patl_3262 NC_008228.1 3911039 3911551 R PFAM: CinA-like; KEGG: stt:t2731 competence/damage-inducible protein CinA C-terminal domain; CinA-like protein complement(3911039..3911551) Pseudoalteromonas atlantica T6c 4175039 YP_662823.1 CDS Patl_3263 NC_008228.1 3911681 3914350 D TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS-like MutS III MutS II MutS IV; KEGG: stm:STM2909 DNA mismatch repair protein mutS; DNA mismatch repair protein MutS 3911681..3914350 Pseudoalteromonas atlantica T6c 4175040 YP_662824.1 CDS Patl_3264 NC_008228.1 3914651 3915013 R PFAM: response regulator receiver; KEGG: pha:PSHAa0913 chemotaxis protein; response regulator receiver protein complement(3914651..3915013) Pseudoalteromonas atlantica T6c 4175041 YP_662825.1 CDS pyrG NC_008228.1 3915234 3916865 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 3915234..3916865 Pseudoalteromonas atlantica T6c 4175042 YP_662826.1 CDS eno NC_008228.1 3916984 3918276 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 3916984..3918276 Pseudoalteromonas atlantica T6c 4175043 YP_662827.1 CDS Patl_3267 NC_008228.1 3918355 3919038 D KEGG: ilo:IL0771 hypothetical protein; hypothetical protein 3918355..3919038 Pseudoalteromonas atlantica T6c 4175044 YP_662828.1 CDS Patl_3268 NC_008228.1 3919367 3920926 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 3919367..3920926 Pseudoalteromonas atlantica T6c 4175045 YP_662829.1 CDS Patl_3269 NC_008228.1 3920934 3922034 D KEGG: son:SO4235 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 3920934..3922034 Pseudoalteromonas atlantica T6c 4175046 YP_662830.1 CDS Patl_3270 NC_008228.1 3922047 3923453 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 3922047..3923453 Pseudoalteromonas atlantica T6c 4175047 YP_662831.1 CDS leuD NC_008228.1 3923469 3924095 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 3923469..3924095 Pseudoalteromonas atlantica T6c 4175048 YP_662832.1 CDS Patl_3272 NC_008228.1 3924326 3925384 D PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: ppr:PBPRA0256 putative transcriptional repressor, LacI family; LacI family transcriptional regulator 3924326..3925384 Pseudoalteromonas atlantica T6c 4175049 YP_662833.1 CDS Patl_3273 NC_008228.1 3925448 3925912 D PFAM: CreA; KEGG: vch:VCA0800 putative CreA protein; CreA family protein 3925448..3925912 Pseudoalteromonas atlantica T6c 4175050 YP_662834.1 CDS Patl_3274 NC_008228.1 3926007 3928475 R PFAM: glycosyltransferase 36 glycosyltransferase 36 associated; KEGG: tma:TM1848 cellobiose-phosphorylase; glycosyltransferase complement(3926007..3928475) Pseudoalteromonas atlantica T6c 4175051 YP_662835.1 CDS Patl_3275 NC_008228.1 3928521 3930062 R TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: cps:CPS_3707 sugar:cation symporter family protein; sugar (glycoside-Pentoside-hexuronide) transporter complement(3928521..3930062) Pseudoalteromonas atlantica T6c 4175052 YP_662836.1 CDS Patl_3276 NC_008228.1 3930442 3932004 R PFAM: tryptophan halogenase; KEGG: cps:CPS_3699 putative tryptophan halogenase; tryptophan halogenase complement(3930442..3932004) Pseudoalteromonas atlantica T6c 4175053 YP_662837.1 CDS Patl_3277 NC_008228.1 3932161 3933693 R PFAM: tryptophan halogenase; KEGG: cps:CPS_3700 putative tryptophan halogenase; tryptophan halogenase complement(3932161..3933693) Pseudoalteromonas atlantica T6c 4175054 YP_662838.1 CDS Patl_3278 NC_008228.1 3933837 3936857 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3698 TonB-dependent receptor; TonB-dependent receptor complement(3933837..3936857) Pseudoalteromonas atlantica T6c 4175055 YP_662839.1 CDS Patl_3279 NC_008228.1 3937945 3938859 R KEGG: hch:HCH_01476 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; hypothetical protein complement(3937945..3938859) Pseudoalteromonas atlantica T6c 4175056 YP_662840.1 CDS Patl_3280 NC_008228.1 3938993 3940138 R KEGG: ppr:PBPRA0441 putative general secretion pathway protein B; hypothetical protein complement(3938993..3940138) Pseudoalteromonas atlantica T6c 4175057 YP_662841.1 CDS Patl_3281 NC_008228.1 3940131 3941042 R SMART: ATPase; KEGG: pha:PSHAa2267 ATPase and membrane protein; ATPase complement(3940131..3941042) Pseudoalteromonas atlantica T6c 4175058 YP_662842.1 CDS Patl_3282 NC_008228.1 3941306 3942523 D PFAM: Polynucleotide adenylyltransferase region metal-dependent phosphohydrolase, HD subdomain; KEGG: pmu:PM0247 tRNA nucleotidyltransferase (CCA-adding enzyme); metal dependent phosphohydrolase 3941306..3942523 Pseudoalteromonas atlantica T6c 4175059 YP_662843.1 CDS Patl_3283 NC_008228.1 3942578 3943234 D KEGG: pha:PSHAa0125 hypothetical protein; hypothetical protein 3942578..3943234 Pseudoalteromonas atlantica T6c 4175060 YP_662844.1 CDS Patl_3284 NC_008228.1 3943322 3944560 D facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 3943322..3944560 Pseudoalteromonas atlantica T6c 4175061 YP_662845.1 CDS Patl_3285 NC_008228.1 3944751 3945215 R hypothetical protein complement(3944751..3945215) Pseudoalteromonas atlantica T6c 4175062 YP_662846.1 CDS Patl_3286 NC_008228.1 3945297 3946403 R TIGRFAM: TonB family protein; KEGG: cps:CPS_4804 TonB domain protein; TonB family protein complement(3945297..3946403) Pseudoalteromonas atlantica T6c 4175063 YP_662847.1 CDS Patl_3287 NC_008228.1 3946633 3947259 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 3946633..3947259 Pseudoalteromonas atlantica T6c 4175064 YP_662848.1 CDS Patl_3288 NC_008228.1 3947264 3948454 D KEGG: eca:ECA3632 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM HemN-like; SMART: Elongator protein 3/MiaB/NifB; putative oxygen-independent coproporphyrinogen III oxidase 3947264..3948454 Pseudoalteromonas atlantica T6c 4175065 YP_662849.1 CDS Patl_3289 NC_008228.1 3948513 3949169 R PFAM: DNA methylase N-4/N-6; KEGG: vpa:VP0394 hemagglutinin associated protein; DNA methylase N-4/N-6 complement(3948513..3949169) Pseudoalteromonas atlantica T6c 4175066 YP_662850.1 CDS Patl_3290 NC_008228.1 3949237 3950016 R KEGG: pha:PSHAa0465 hypothetical protein; hypothetical protein complement(3949237..3950016) Pseudoalteromonas atlantica T6c 4175067 YP_662851.1 CDS Patl_3291 NC_008228.1 3950107 3950604 R PFAM: protein of unknown function DUF1566; KEGG: pha:PSHAa2268 Fimh-like protein; hypothetical protein complement(3950107..3950604) Pseudoalteromonas atlantica T6c 4175068 YP_662852.1 CDS Patl_3292 NC_008228.1 3950606 3952321 R PFAM: protein of unknown function DUF1566; KEGG: pha:PSHAa2269 hypothetical protein; hypothetical protein complement(3950606..3952321) Pseudoalteromonas atlantica T6c 4175069 YP_662853.1 CDS Patl_3293 NC_008228.1 3952408 3953121 R PFAM: LrgB-like protein; KEGG: gme:Gmet_1204 LrgB-like protein; LrgB-like protein complement(3952408..3953121) Pseudoalteromonas atlantica T6c 4175070 YP_662854.1 CDS Patl_3294 NC_008228.1 3953164 3953541 R PFAM: LrgA; KEGG: dar:Daro_3105 LrgA; LrgA protein complement(3953164..3953541) Pseudoalteromonas atlantica T6c 4175071 YP_662855.1 CDS Patl_3295 NC_008228.1 3953606 3954964 R PFAM: response regulator receiver sigma-54 factor, interaction region helix-turn-helix, Fis-type; SMART: ATPase; KEGG: cps:CPS_5030 sigma-54 dependent DNA-binding response regulator, Fis family; two component sigma-54 specific Fis family transcriptional regulator complement(3953606..3954964) Pseudoalteromonas atlantica T6c 4175072 YP_662856.1 CDS Patl_3296 NC_008228.1 3954990 3957008 R PFAM: ATP-binding region, ATPase-like; KEGG: cps:CPS_5031 sensor histidine kinase; sensor signal transduction histidine kinase complement(3954990..3957008) Pseudoalteromonas atlantica T6c 4175073 YP_662857.1 CDS Patl_3297 NC_008228.1 3957069 3958193 R catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(3957069..3958193) Pseudoalteromonas atlantica T6c 4175074 YP_662858.1 CDS glpT NC_008228.1 3958617 3959990 R catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter complement(3958617..3959990) Pseudoalteromonas atlantica T6c 4175075 YP_662859.1 CDS Patl_3299 NC_008228.1 3960138 3961439 R PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B2836 major facilitator superfamily (MFS_1) transporter; major facilitator superfamily transporter complement(3960138..3961439) Pseudoalteromonas atlantica T6c 4175076 YP_662860.1 CDS Patl_3300 NC_008228.1 3961693 3964089 D PFAM: fatty acid cistrans isomerase; KEGG: vpa:VPA0677 fatty acid cis/trans isomerase; fatty acid cistrans isomerase 3961693..3964089 Pseudoalteromonas atlantica T6c 4175077 YP_662861.1 CDS Patl_3301 NC_008228.1 3964180 3964989 R hypothetical protein complement(3964180..3964989) Pseudoalteromonas atlantica T6c 4175078 YP_662862.1 CDS Patl_3302 NC_008228.1 3965225 3965473 R hypothetical protein complement(3965225..3965473) Pseudoalteromonas atlantica T6c 4175079 YP_662863.1 CDS Patl_3303 NC_008228.1 3965555 3966451 R PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: vch:VCA1055 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3965555..3966451) Pseudoalteromonas atlantica T6c 4175080 YP_662864.1 CDS Patl_3304 NC_008228.1 3966567 3967199 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: vch:VCA1054 hypothetical protein; NAD-dependent epimerase/dehydratase 3966567..3967199 Pseudoalteromonas atlantica T6c 4175081 YP_662865.1 CDS Patl_3305 NC_008228.1 3967304 3967834 R KEGG: ccr:CC1285 hypothetical protein; hypothetical protein complement(3967304..3967834) Pseudoalteromonas atlantica T6c 4175082 YP_662866.1 CDS Patl_3306 NC_008228.1 3968167 3968640 R PFAM: MgtC/SapB transporter; KEGG: pha:PSHAa1383 transporter; MgtC/SapB transporter complement(3968167..3968640) Pseudoalteromonas atlantica T6c 4175083 YP_662867.1 CDS Patl_3307 NC_008228.1 3969095 3970444 R KEGG: pfl:PFL_5409 hypothetical protein; dienelactone hydrolase-like protein complement(3969095..3970444) Pseudoalteromonas atlantica T6c 4175084 YP_662868.1 CDS Patl_3308 NC_008228.1 3970549 3970992 R TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily; KEGG: bte:BTH_I2491 uncharacterized domain 1, putative; hypothetical protein complement(3970549..3970992) Pseudoalteromonas atlantica T6c 4175085 YP_662869.1 CDS Patl_3309 NC_008228.1 3971333 3972256 R KEGG: cps:CPS_3850 hypothetical protein; hypothetical protein complement(3971333..3972256) Pseudoalteromonas atlantica T6c 4175086 YP_662870.1 CDS Patl_3310 NC_008228.1 3972267 3972917 R KEGG: cps:CPS_3851 hypothetical protein; hypothetical protein complement(3972267..3972917) Pseudoalteromonas atlantica T6c 4175087 YP_662871.1 CDS Patl_3311 NC_008228.1 3972904 3973452 R PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: cps:CPS_3852 RNA polymerase sigma factor, sigma-70 family; ECF subfamily RNA polymerase sigma-24 factor complement(3972904..3973452) Pseudoalteromonas atlantica T6c 4175088 YP_662872.1 CDS Patl_3312 NC_008228.1 3973527 3974438 R PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ilo:IL2577 transcriptional regulator of LysR family; LysR family transcriptional regulator complement(3973527..3974438) Pseudoalteromonas atlantica T6c 4175089 YP_662873.1 CDS Patl_3313 NC_008228.1 3974674 3976062 R PFAM: phosphate-selective porin O and P; KEGG: eli:ELI_11870 hypothetical protein; phosphate-selective porin O and P complement(3974674..3976062) Pseudoalteromonas atlantica T6c 4175090 YP_662874.1 CDS Patl_3314 NC_008228.1 3976456 3977157 R TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU; KEGG: pae:PA5365 phosphate transport system regulatory protein; phosphate uptake regulator PhoU complement(3976456..3977157) Pseudoalteromonas atlantica T6c 4175091 YP_662875.1 CDS Patl_3315 NC_008228.1 3977173 3978045 R KEGG: mca:MCA1074 phosphate ABC transporter, ATP-binding protein; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: ATPase; phosphate ABC transporter ATPase complement(3977173..3978045) Pseudoalteromonas atlantica T6c 4175092 YP_662876.1 CDS Patl_3316 NC_008228.1 3978058 3979383 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA1073 phosphate ABC transporter, permease protein; phosphate ABC transporter permease complement(3978058..3979383) Pseudoalteromonas atlantica T6c 4175093 YP_662877.1 CDS Patl_3317 NC_008228.1 3979386 3980780 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA1072 phosphate ABC transporter, permease protein; phosphate ABC transporter permease complement(3979386..3980780) Pseudoalteromonas atlantica T6c 4175094 YP_662878.1 CDS Patl_3318 NC_008228.1 3980797 3981882 R KEGG: mca:MCA0949 phosphate binding protein, putative; phosphate binding protein complement(3980797..3981882) Pseudoalteromonas atlantica T6c 4175095 YP_662879.1 CDS Patl_3319 NC_008228.1 3982096 3983364 R PFAM: phosphate transporter; KEGG: ilo:IL2207 phosphate permease; phosphate transporter complement(3982096..3983364) Pseudoalteromonas atlantica T6c 4175096 YP_662880.1 CDS Patl_3320 NC_008228.1 3983377 3984054 R PFAM: protein of unknown function DUF47; KEGG: pha:PSHAa0313 hypothetical protein; hypothetical protein complement(3983377..3984054) Pseudoalteromonas atlantica T6c 4175097 YP_662881.1 CDS Patl_3321 NC_008228.1 3984364 3984876 D PFAM: amino acid-binding ACT; KEGG: ppr:PBPRA0727 hypothetical protein; amino acid-binding protein 3984364..3984876 Pseudoalteromonas atlantica T6c 4175098 YP_662882.1 CDS Patl_3322 NC_008228.1 3985021 3987105 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 3985021..3987105 Pseudoalteromonas atlantica T6c 4175099 YP_662883.1 CDS Patl_3323 NC_008228.1 3987095 3988624 D PFAM: Ppx/GppA phosphatase; KEGG: vvy:VV0726 exopolyphosphatase; Ppx/GppA phosphatase 3987095..3988624 Pseudoalteromonas atlantica T6c 4175100 YP_662884.1 CDS Patl_3324 NC_008228.1 3988791 3989051 D KEGG: pha:PSHAb0247 hypothetical protein; hypothetical protein 3988791..3989051 Pseudoalteromonas atlantica T6c 4175101 YP_662885.1 CDS Patl_3325 NC_008228.1 3989114 3989707 D KEGG: ftu:FTT0911 hypothetical protein; hypothetical protein 3989114..3989707 Pseudoalteromonas atlantica T6c 4175102 YP_662886.1 CDS Patl_3326 NC_008228.1 3989704 3990042 R KEGG: pha:PSHAb0085 putative orphan protein; hypothetical protein complement(3989704..3990042) Pseudoalteromonas atlantica T6c 4175103 YP_662887.1 CDS Patl_3327 NC_008228.1 3990250 3991149 R catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis; fructose-1,6-bisphosphate aldolase complement(3990250..3991149) Pseudoalteromonas atlantica T6c 4175104 YP_662888.1 CDS pgk NC_008228.1 3991307 3992482 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(3991307..3992482) Pseudoalteromonas atlantica T6c 4175105 YP_662889.1 CDS Patl_3329 NC_008228.1 3992605 3993633 R KEGG: pha:PSHAa0594 D-erythrose 4-phosphate dehydrogenase; TIGRFAM: D-erythrose-4-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase dihydrodipicolinate reductase; D-erythrose-4-phosphate dehydrogenase complement(3992605..3993633) Pseudoalteromonas atlantica T6c 4175106 YP_662890.1 CDS Patl_3330 NC_008228.1 3993777 3995777 R TIGRFAM: transketolase; PFAM: Transketolase-like Transketolase, central region; KEGG: son:SO0930 transketolase; transketolase complement(3993777..3995777) Pseudoalteromonas atlantica T6c 4175107 YP_662891.1 CDS Patl_3331 NC_008228.1 3996057 3997208 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3996057..3997208 Pseudoalteromonas atlantica T6c 4175108 YP_662892.1 CDS Patl_3332 NC_008228.1 3997397 3998203 D PFAM: peptidase M48, Ste24p; KEGG: vvy:VVA0755 Zn-dependent protease with chaperone function; peptidase M48, Ste24p 3997397..3998203 Pseudoalteromonas atlantica T6c 4175109 YP_662893.1 CDS Patl_3333 NC_008228.1 3998276 3999103 R PFAM: MscS Mechanosensitive ion channel; KEGG: tcx:Tcr_1584 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS complement(3998276..3999103) Pseudoalteromonas atlantica T6c 4175110 YP_662894.1 CDS Patl_3334 NC_008228.1 3999764 4000492 D PFAM: protein of unknown function DUF558; KEGG: pha:PSHAa2598 RNA methyltransferase with a deep trefoil knot, RrmA and YibK are structural paralogs; hypothetical protein 3999764..4000492 Pseudoalteromonas atlantica T6c 4175111 YP_662895.1 CDS Patl_3335 NC_008228.1 4000685 4002079 D PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: dvu:DVU0721 sensory box histidine kinase; histidine kinase 4000685..4002079 Pseudoalteromonas atlantica T6c 4175112 YP_662896.1 CDS Patl_3336 NC_008228.1 4002171 4003259 R KEGG: eli:ELI_11930 glutathione S-transferase; glutathione S-transferase complement(4002171..4003259) Pseudoalteromonas atlantica T6c 4175113 YP_662897.1 CDS Patl_3337 NC_008228.1 4003416 4004453 R PFAM: phospholipase/Carboxylesterase; KEGG: hch:HCH_03321 putative esterase/lipase; phospholipase/carboxylesterase complement(4003416..4004453) Pseudoalteromonas atlantica T6c 4175114 YP_662898.1 CDS Patl_3338 NC_008228.1 4004589 4005332 R TIGRFAM: Glutaredoxin-family domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen glutaredoxin Redoxin; KEGG: pha:PSHAa0759 peroxiredoxin/glutaredoxin protein; glutaredoxin family protein complement(4004589..4005332) Pseudoalteromonas atlantica T6c 4175115 YP_662899.1 CDS Patl_3339 NC_008228.1 4005482 4005712 R PFAM: protein of unknown function DUF329; KEGG: pha:PSHAa0377 hypothetical protein; hypothetical protein complement(4005482..4005712) Pseudoalteromonas atlantica T6c 4175116 YP_662900.1 CDS Patl_3340 NC_008228.1 4005749 4006582 R PFAM: protein of unknown function DUF1342; KEGG: ppr:PBPRA3205 conserved hypothetical protein; hypothetical protein complement(4005749..4006582) Pseudoalteromonas atlantica T6c 4175117 YP_662901.1 CDS Patl_3341 NC_008228.1 4006632 4007246 R KEGG: yps:YPTB0702 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase complement(4006632..4007246) Pseudoalteromonas atlantica T6c 4175118 YP_662902.1 CDS Patl_3342 NC_008228.1 4007281 4008183 R PFAM: peptidase A24A, prepilin type IV peptidase A24A-like; KEGG: pha:PSHAa0380 leader peptide processing enzyme; prepilin peptidase complement(4007281..4008183) Pseudoalteromonas atlantica T6c 4175119 YP_662903.1 CDS Patl_3343 NC_008228.1 4008290 4009495 R PFAM: type II secretion system protein; KEGG: cps:CPS_4448 type IV pilus biogenesis protein PilC; type II secretion system protein complement(4008290..4009495) Pseudoalteromonas atlantica T6c 4175120 YP_662904.1 CDS Patl_3344 NC_008228.1 4009560 4010006 R PFAM: methylation; KEGG: cps:CPS_4444 type IV pilin; prepilin-type cleavage/methylation protein complement(4009560..4010006) Pseudoalteromonas atlantica T6c 4175121 YP_662905.1 CDS Patl_3345 NC_008228.1 4010211 4011053 R KEGG: ilo:IL0454 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase complement(4010211..4011053) Pseudoalteromonas atlantica T6c 4175122 YP_662906.1 CDS Patl_3346 NC_008228.1 4011101 4011577 R TIGRFAM: conserved hypothetical protein; KEGG: pfl:PFL_0547 Retroviral aspartyl protease domain protein; hypothetical protein complement(4011101..4011577) Pseudoalteromonas atlantica T6c 4175123 YP_662907.1 CDS Patl_3347 NC_008228.1 4011705 4012289 D PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: hit:NTHI0411 AmpD; N-acetyl-anhydromuranmyl-L-alanine amidase 4011705..4012289 Pseudoalteromonas atlantica T6c 4175124 YP_662908.1 CDS Patl_3348 NC_008228.1 4012349 4013161 D involved in regulation of beta-lactamase; putative signaling protein; regulatory protein AmpE 4012349..4013161 Pseudoalteromonas atlantica T6c 4175125 YP_662909.1 CDS Patl_3349 NC_008228.1 4013379 4014134 D PFAM: regulatory protein GntR, HTH GntR-like; KEGG: son:SO0423 pyruvate dehydrogenase complex repressor; regulatory protein GntR 4013379..4014134 Pseudoalteromonas atlantica T6c 4175126 YP_662910.1 CDS aceE NC_008228.1 4014241 4016913 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 4014241..4016913 Pseudoalteromonas atlantica T6c 4175127 YP_662911.1 CDS Patl_3351 NC_008228.1 4016934 4018928 D KEGG: son:SO0425 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase); TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment catalytic domain of components of various dehydrogenase complexes E3 binding; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 4016934..4018928 Pseudoalteromonas atlantica T6c 4175128 YP_662912.1 CDS Patl_3352 NC_008228.1 4019041 4020465 D E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 4019041..4020465 Pseudoalteromonas atlantica T6c 4175129 YP_662913.1 CDS Patl_3353 NC_008228.1 4020808 4022889 D PFAM: peptidase M13, neprilysin peptidase M13; KEGG: ilo:IL0461 secreted zinc metalloproteinase; endothelin-converting protein 1 4020808..4022889 Pseudoalteromonas atlantica T6c 4175130 YP_662914.1 CDS Patl_3354 NC_008228.1 4022973 4023293 D PFAM: protein of unknown function DUF1289; KEGG: plu:plu2601 hypothetical protein; hypothetical protein 4022973..4023293 Pseudoalteromonas atlantica T6c 4175131 YP_662915.1 CDS Patl_3355 NC_008228.1 4023290 4024231 R PFAM: alpha/beta hydrolase fold; KEGG: cac:CAP0097 carboxyl esterase, a/b hydrolase; alpha/beta hydrolase fold protein complement(4023290..4024231) Pseudoalteromonas atlantica T6c 4175132 YP_662916.1 CDS Patl_3356 NC_008228.1 4024357 4025187 D KEGG: cps:CPS_4407 hypothetical protein; putative signal transduction protein 4024357..4025187 Pseudoalteromonas atlantica T6c 4175133 YP_662917.1 CDS Patl_3357 NC_008228.1 4025291 4026097 D KEGG: ilo:IL2210 putative salt-induced outer membrane protein; putative salt-induced outer membrane protein 4025291..4026097 Pseudoalteromonas atlantica T6c 4175134 YP_662918.1 CDS Patl_3358 NC_008228.1 4026147 4026884 D PFAM: protein of unknown function DUF481; KEGG: pha:PSHAa0397 hypothetical protein; hypothetical protein 4026147..4026884 Pseudoalteromonas atlantica T6c 4175135 YP_662919.1 CDS Patl_3359 NC_008228.1 4026947 4028179 R KEGG: cps:CPS_0914 hypothetical protein; hypothetical protein complement(4026947..4028179) Pseudoalteromonas atlantica T6c 4175136 YP_662920.1 CDS Patl_3360 NC_008228.1 4028176 4030533 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: cps:CPS_0913 sensory box sensor/GGDEF/EAL domain protein; diguanylate cyclase/phosphodiesterase complement(4028176..4030533) Pseudoalteromonas atlantica T6c 4175137 YP_662921.1 CDS Patl_3361 NC_008228.1 4030526 4031134 R KEGG: psp:PSPPH_3940 hypothetical protein; hypothetical protein complement(4030526..4031134) Pseudoalteromonas atlantica T6c 4175138 YP_662922.1 CDS Patl_3362 NC_008228.1 4031294 4035037 R KEGG: pha:PSHAa2076 hypothetical protein ; membrane protein; ATPase complement(4031294..4035037) Pseudoalteromonas atlantica T6c 4175139 YP_662923.1 CDS Patl_3363 NC_008228.1 4035445 4036461 R KEGG: ilo:IL1019 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding Semialdehyde dehydrogenase, dimerisation region; aspartate-semialdehyde dehydrogenase complement(4035445..4036461) Pseudoalteromonas atlantica T6c 4175140 YP_662924.1 CDS Patl_3364 NC_008228.1 4036502 4037626 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: cps:CPS_3806 erythronate-4-phosphate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase complement(4036502..4037626) Pseudoalteromonas atlantica T6c 4175141 YP_662925.1 CDS Patl_3365 NC_008228.1 4037857 4038750 R PFAM: alpha/beta hydrolase fold; KEGG: pae:PA3429 probable epoxide hydrolase; alpha/beta hydrolase fold protein complement(4037857..4038750) Pseudoalteromonas atlantica T6c 4175142 YP_662926.1 CDS Patl_3366 NC_008228.1 4038750 4039502 R PFAM: class II aldolase/adducin-like; KEGG: pae:PA3430 probable aldolase; class II aldolase/adducin-like protein complement(4038750..4039502) Pseudoalteromonas atlantica T6c 4175143 YP_662927.1 CDS Patl_3367 NC_008228.1 4039599 4040291 D PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: pfo:Pfl_0199 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator 4039599..4040291 Pseudoalteromonas atlantica T6c 4175144 YP_662928.1 CDS Patl_3368 NC_008228.1 4040427 4042580 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: son:SO4077 TonB-dependent receptor, putative; TonB-dependent receptor 4040427..4042580 Pseudoalteromonas atlantica T6c 4175145 YP_662929.1 CDS Patl_3369 NC_008228.1 4042616 4043689 D PFAM: ATP-binding region, ATPase-like; KEGG: ilo:IL0167 signal transduction histidine kinase; sensor signal transduction histidine kinase 4042616..4043689 Pseudoalteromonas atlantica T6c 4175146 YP_662930.1 CDS Patl_3370 NC_008228.1 4043682 4044209 D PFAM: response regulator receiver helix-turn-helix, Fis-type; KEGG: ilo:IL0166 response regulator with a fis-type DNA-binding domain (CheY, fis domains); response regulator receiver protein 4043682..4044209 Pseudoalteromonas atlantica T6c 4175147 YP_662931.1 CDS Patl_3371 NC_008228.1 4044583 4045599 D hypothetical protein 4044583..4045599 Pseudoalteromonas atlantica T6c 4175148 YP_662932.1 CDS Patl_3372 NC_008228.1 4045599 4046228 D hypothetical protein 4045599..4046228 Pseudoalteromonas atlantica T6c 4175149 YP_662933.1 CDS Patl_3373 NC_008228.1 4046237 4048237 D TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: noc:Noc_0226 PAS sensor diguanylate cyclase and phophodiesterase; diguanylate cyclase/phosphodiesterase 4046237..4048237 Pseudoalteromonas atlantica T6c 4175150 YP_662934.1 CDS Patl_3374 NC_008228.1 4048628 4049557 D KEGG: rru:Rru_A1207 exopolyphosphatase-related protein; exopolyphosphatase-like protein 4048628..4049557 Pseudoalteromonas atlantica T6c 4175151 YP_662935.1 CDS Patl_3375 NC_008228.1 4049602 4050135 R hypothetical protein complement(4049602..4050135) Pseudoalteromonas atlantica T6c 4175152 YP_662936.1 CDS Patl_3376 NC_008228.1 4050312 4051121 R PFAM: peptidase M23B; KEGG: hch:HCH_05221 membrane protein related to metalloendopeptidase; peptidase M23B complement(4050312..4051121) Pseudoalteromonas atlantica T6c 4175153 YP_662937.1 CDS Patl_3377 NC_008228.1 4051114 4051989 R KEGG: son:SO2179 hypothetical protein; hypothetical protein complement(4051114..4051989) Pseudoalteromonas atlantica T6c 4175154 YP_662938.1 CDS Patl_3378 NC_008228.1 4052138 4053187 R PFAM: 37 kDa nucleoid-associated protein; KEGG: pha:PSHAa1817 nucleoid-associated protein NdpA; 37 kDa nucleoid-associated protein complement(4052138..4053187) Pseudoalteromonas atlantica T6c 4175155 YP_662939.1 CDS Patl_3379 NC_008228.1 4053374 4053592 D PFAM: protein of unknown function DUF1414; KEGG: pmu:PM1884 hypothetical HI0840; hypothetical protein 4053374..4053592 Pseudoalteromonas atlantica T6c 4175156 YP_662940.1 CDS Patl_3380 NC_008228.1 4053601 4055130 D KEGG: ilo:IL0678 membrane-associated hydrolase of alkaline phosphatase superfamily; alkaline phosphatase superfamily hydrolase 4053601..4055130 Pseudoalteromonas atlantica T6c 4175157 YP_662941.1 CDS Patl_3381 NC_008228.1 4055183 4056031 R KEGG: vpa:VP2160 rRNA (guanine-N1-)-methyltransferase; rRNA (guanine-N(1)-)-methyltransferase complement(4055183..4056031) Pseudoalteromonas atlantica T6c 4175158 YP_662942.1 CDS Patl_3382 NC_008228.1 4056106 4057302 R PFAM: major facilitator superfamily MFS_1; KEGG: bsu:BG13075 glucose/mannose:H+ symporter; major facilitator superfamily transporter complement(4056106..4057302) Pseudoalteromonas atlantica T6c 4175159 YP_662943.1 CDS Patl_3383 NC_008228.1 4057660 4058874 R PFAM: beta-ketoacyl synthase; KEGG: pha:PSHAa2080 3-oxoacyl-[acyl-carrier-protein] synthase I; beta-ketoacyl synthase complement(4057660..4058874) Pseudoalteromonas atlantica T6c 4175160 YP_662944.1 CDS Patl_3384 NC_008228.1 4059136 4061253 D PFAM: FAD dependent oxidoreductase protein of unknown function DUF752; KEGG: plu:plu3185 hypothetical protein; hypothetical protein 4059136..4061253 Pseudoalteromonas atlantica T6c 4175161 YP_662945.1 CDS Patl_3385 NC_008228.1 4061275 4061586 R KEGG: sdy:SDY_2524 hypothetical protein; hypothetical protein complement(4061275..4061586) Pseudoalteromonas atlantica T6c 4175162 YP_662946.1 CDS Patl_3386 NC_008228.1 4061620 4062756 R PFAM: ATP-NAD/AcoX kinase; KEGG: pha:PSHAa0987 hypothetical protein; ATP-NAD/AcoX kinase complement(4061620..4062756) Pseudoalteromonas atlantica T6c 4175163 YP_662947.1 CDS Patl_3387 NC_008228.1 4062756 4063388 R PFAM: protein of unknown function DUF462; KEGG: cps:CPS_3812 hypothetical protein; hypothetical protein complement(4062756..4063388) Pseudoalteromonas atlantica T6c 4175164 YP_662948.1 CDS Patl_3388 NC_008228.1 4063537 4064274 D KEGG: cps:CPS_3694 hypothetical protein; hypothetical protein 4063537..4064274 Pseudoalteromonas atlantica T6c 4175165 YP_662949.1 CDS Patl_3389 NC_008228.1 4064344 4065171 D KEGG: hch:HCH_01084 hypothetical protein; hypothetical protein 4064344..4065171 Pseudoalteromonas atlantica T6c 4175166 YP_662950.1 CDS Patl_3390 NC_008228.1 4065178 4065642 D PFAM: thioesterase superfamily; KEGG: pae:PA3130 hypothetical protein; thioesterase superfamily protein 4065178..4065642 Pseudoalteromonas atlantica T6c 4175167 YP_662951.1 CDS Patl_3391 NC_008228.1 4065656 4066933 D PFAM: peptidase A2A, retrovirus, catalytic; KEGG: bja:bll8127 hypothetical protein; putative peptidase A2A 4065656..4066933 Pseudoalteromonas atlantica T6c 4175168 YP_662952.1 CDS Patl_3392 NC_008228.1 4067039 4067896 R PFAM: protein of unknown function RIO1; KEGG: cps:CPS_4795 RIO1/ZK632.3/MJ0444 family protein; hypothetical protein complement(4067039..4067896) Pseudoalteromonas atlantica T6c 4175169 YP_662953.1 CDS Patl_3393 NC_008228.1 4068348 4069184 D hypothetical protein 4068348..4069184 Pseudoalteromonas atlantica T6c 4175170 YP_662954.1 CDS Patl_3394 NC_008228.1 4069317 4070213 D KEGG: sma:SAV6339 putative 2,3,4, 5-tetrahydropyridine-2-carboxylate N-succinyltransferase; putative 2,3,4, 5-tetrahydropyridine-2-carboxylate N-succinyltransferase 4069317..4070213 Pseudoalteromonas atlantica T6c 4175171 YP_662955.1 CDS Patl_3395 NC_008228.1 4070358 4071413 R PFAM: Bile acid:sodium symporter; KEGG: son:SO0534 arsenical pump membrane protein, putative; bile acid:sodium symporter complement(4070358..4071413) Pseudoalteromonas atlantica T6c 4175172 YP_662956.1 CDS Patl_3396 NC_008228.1 4071428 4072162 R PFAM: NADPH-dependent FMN reductase; KEGG: bur:Bcep18194_C6565 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(4071428..4072162) Pseudoalteromonas atlantica T6c 4175173 YP_662957.1 CDS Patl_3397 NC_008228.1 4072162 4072686 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: ppu:PP1928 arsenate reductase; protein tyrosine phosphatase complement(4072162..4072686) Pseudoalteromonas atlantica T6c 4175174 YP_662958.1 CDS Patl_3398 NC_008228.1 4072775 4073119 R PFAM: regulatory protein, ArsR; KEGG: pha:PSHAb0181 putative arsenic resistance operon regulator; ArsR family transcriptional regulator complement(4072775..4073119) Pseudoalteromonas atlantica T6c 4175175 YP_662959.1 CDS Patl_3399 NC_008228.1 4073360 4074397 D PFAM: MscS Mechanosensitive ion channel; KEGG: mma:MM2091 putative transport channel protein; mechanosensitive ion channel protein MscS 4073360..4074397 Pseudoalteromonas atlantica T6c 4175176 YP_662960.1 CDS Patl_3400 NC_008228.1 4074405 4074896 R PFAM: ribonuclease H; KEGG: pca:Pcar_2273 hypothetical protein; ribonuclease H complement(4074405..4074896) Pseudoalteromonas atlantica T6c 4175177 YP_662961.1 CDS Patl_3401 NC_008228.1 4075022 4075519 D KEGG: cps:CPS_1010 hypothetical protein; hypothetical protein 4075022..4075519 Pseudoalteromonas atlantica T6c 4175178 YP_662962.1 CDS Patl_3402 NC_008228.1 4075532 4075906 R hypothetical protein complement(4075532..4075906) Pseudoalteromonas atlantica T6c 4175179 YP_662963.1 CDS Patl_3403 NC_008228.1 4076082 4076441 R hypothetical protein complement(4076082..4076441) Pseudoalteromonas atlantica T6c 4175180 YP_662964.1 CDS Patl_3404 NC_008228.1 4076893 4077741 R PFAM: MltA-interacting MipA; KEGG: bur:Bcep18194_B2733 outer membrane protein; MltA-interacting MipA complement(4076893..4077741) Pseudoalteromonas atlantica T6c 4175181 YP_662965.1 CDS Patl_3405 NC_008228.1 4077938 4078351 R KEGG: hch:HCH_06947 hypothetical protein; hypothetical protein complement(4077938..4078351) Pseudoalteromonas atlantica T6c 4175182 YP_662966.1 CDS Patl_3406 NC_008228.1 4078721 4079992 D KEGG: ppr:PBPRB1415 putative homocysteine synthase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes DegT/DnrJ/EryC1/StrS aminotransferase aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase 4078721..4079992 Pseudoalteromonas atlantica T6c 4175183 YP_662967.1 CDS Patl_3407 NC_008228.1 4080148 4080534 D KEGG: atc:AGR_C_3952 hypothetical protein; hypothetical protein 4080148..4080534 Pseudoalteromonas atlantica T6c 4175184 YP_662968.1 CDS Patl_3408 NC_008228.1 4080643 4081755 R KEGG: cps:CPS_4422 alkaline phosphatase D domain protein; alkaline phosphatase D domain-containing protein complement(4080643..4081755) Pseudoalteromonas atlantica T6c 4175185 YP_662969.1 CDS Patl_3409 NC_008228.1 4081736 4082935 R KEGG: cps:CPS_4421 hypothetical protein; hypothetical protein complement(4081736..4082935) Pseudoalteromonas atlantica T6c 4175186 YP_662970.1 CDS Patl_3410 NC_008228.1 4083105 4085450 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_4420 TonB-dependent receptor; TonB-dependent receptor complement(4083105..4085450) Pseudoalteromonas atlantica T6c 4175187 YP_662971.1 CDS Patl_3411 NC_008228.1 4085752 4086441 D PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: pfo:Pfl_4221 two component transcriptional regulator, winged helix family; two component transcriptional regulator 4085752..4086441 Pseudoalteromonas atlantica T6c 4175188 YP_662972.1 CDS Patl_3412 NC_008228.1 4086438 4087853 D PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: ppu:PP1652 sensor histidine kinase; sensor signal transduction histidine kinase 4086438..4087853 Pseudoalteromonas atlantica T6c 4175189 YP_662973.1 CDS Patl_3413 NC_008228.1 4087855 4088997 R KEGG: cps:CPS_4883 hypothetical protein; hypothetical protein complement(4087855..4088997) Pseudoalteromonas atlantica T6c 4175190 YP_662974.1 CDS Patl_3414 NC_008228.1 4089018 4091081 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ilo:IL0069 outer membrane protein; TonB-dependent receptor complement(4089018..4091081) Pseudoalteromonas atlantica T6c 4175191 YP_662975.1 CDS djlA NC_008228.1 4091328 4092182 R functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein complement(4091328..4092182) Pseudoalteromonas atlantica T6c 4175192 YP_662976.1 CDS Patl_3416 NC_008228.1 4092224 4092976 R PFAM: Nucleotidyl transferase; KEGG: son:SO3634 nucleotidyltransferase family protein; nucleotidyl transferase complement(4092224..4092976) Pseudoalteromonas atlantica T6c 4175193 YP_662977.1 CDS Patl_3417 NC_008228.1 4093047 4094084 R PFAM: aminoglycoside phosphotransferase; KEGG: ilo:IL2228 predicted phosphotransferase related to Ser/Thr protein kinases; aminoglycoside phosphotransferase complement(4093047..4094084) Pseudoalteromonas atlantica T6c 4175194 YP_662978.1 CDS Patl_3418 NC_008228.1 4094239 4096446 D PFAM: OstA-like protein Organic solvent tolerance protein; KEGG: cps:CPS_4523 organic solvent tolerance protein; organic solvent tolerance protein 4094239..4096446 Pseudoalteromonas atlantica T6c 4175195 YP_662979.1 CDS Patl_3419 NC_008228.1 4096514 4097809 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pha:PSHAa2633 peptidyl-prolyl cis-trans isomerase (PPIase); PpiC-type peptidyl-prolyl cis-trans isomerase 4096514..4097809 Pseudoalteromonas atlantica T6c 4175196 YP_662980.1 CDS Patl_3420 NC_008228.1 4097813 4098793 D KEGG: pha:PSHAa2634 4-hydroxythreonine-4-phosphate dehydrogenase,(4-(phosphohydroxy)-L-threonine dehydrogenase); TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 4097813..4098793 Pseudoalteromonas atlantica T6c 4175197 YP_662981.1 CDS Patl_3421 NC_008228.1 4098790 4099596 D TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: vfi:VF0286 dimethyladenosine transferase; dimethyladenosine transferase 4098790..4099596 Pseudoalteromonas atlantica T6c 4175198 YP_662982.1 CDS apaG NC_008228.1 4099597 4099998 D protein associated with Co2+ and Mg2+ efflux; ApaG protein 4099597..4099998 Pseudoalteromonas atlantica T6c 4175199 YP_662983.1 CDS apaH NC_008228.1 4100013 4100813 D hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 4100013..4100813 Pseudoalteromonas atlantica T6c 4175200 YP_662984.1 CDS Patl_3424 NC_008228.1 4101210 4103234 D PFAM: histidine kinase, HAMP region chemotaxis sensory transducer; KEGG: cps:CPS_4528 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4101210..4103234 Pseudoalteromonas atlantica T6c 4175201 YP_662985.1 CDS Patl_3425 NC_008228.1 4103318 4104676 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III complement(4103318..4104676) Pseudoalteromonas atlantica T6c 4175202 YP_662986.1 CDS Patl_3426 NC_008228.1 4104915 4106477 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 4104915..4106477 Pseudoalteromonas atlantica T6c 4175203 YP_662987.1 CDS Patl_3427 NC_008228.1 4106593 4107057 R PFAM: protein of unknown function DUF192; KEGG: rso:RSc2494 hypothetical signal peptide protein; hypothetical protein complement(4106593..4107057) Pseudoalteromonas atlantica T6c 4175204 YP_662988.1 CDS Patl_3428 NC_008228.1 4107334 4109946 R catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase complement(4107334..4109946) Pseudoalteromonas atlantica T6c 4175205 YP_662989.1 CDS Patl_3429 NC_008228.1 4110367 4111443 D PFAM: Strictosidine synthase; KEGG: pae:PA1293 hypothetical protein; strictosidine synthase 4110367..4111443 Pseudoalteromonas atlantica T6c 4175206 YP_662990.1 CDS Patl_3430 NC_008228.1 4111791 4112336 D TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI; KEGG: xcv:XCV3076 DJ-1/PfpI family protein; PfpI family intracellular peptidase 4111791..4112336 Pseudoalteromonas atlantica T6c 4175207 YP_662991.1 CDS Patl_3431 NC_008228.1 4112396 4114750 R PFAM: Radical SAM Radical SAM-like; SMART: Elongator protein 3/MiaB/NifB; KEGG: pha:PSHAa0508 hypothetical protein; radical SAM protein complement(4112396..4114750) Pseudoalteromonas atlantica T6c 4175208 YP_662992.1 CDS Patl_3432 NC_008228.1 4114966 4116252 R TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1; KEGG: son:SO1994 membrane-bound lytic transglycolase-related protein; lytic murein transglycosylase complement(4114966..4116252) Pseudoalteromonas atlantica T6c 4175209 YP_662993.1 CDS Patl_3433 NC_008228.1 4116453 4117019 R KEGG: ava:Ava_5067 formylmethionine deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase complement(4116453..4117019) Pseudoalteromonas atlantica T6c 4175210 YP_662994.1 CDS Patl_3434 NC_008228.1 4117046 4118794 R KEGG: son:SO3665 ABC transporter, ATP-binding/permease protein, putative; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase; lipid ABC transporter ATPase/inner membrane protein complement(4117046..4118794) Pseudoalteromonas atlantica T6c 4175211 YP_662995.1 CDS Patl_3435 NC_008228.1 4118991 4120673 D PFAM: sulfatase protein of unknown function DUF1705; KEGG: par:Psyc_1161 probable integral membrane protein; sulfatase 4118991..4120673 Pseudoalteromonas atlantica T6c 4175212 YP_662996.1 CDS Patl_3436 NC_008228.1 4120933 4121865 D TIGRFAM: PEP motif putative anchor-like; PFAM: lipolytic enzyme, G-D-S-L; KEGG: nmu:Nmul_A1186 lipolytic enzyme, G-D-S-L; PEP domain-containing protein 4120933..4121865 Pseudoalteromonas atlantica T6c 4175213 YP_662997.1 CDS Patl_3437 NC_008228.1 4122052 4124106 R KEGG: cps:CPS_1933 sensory box/GGDEF/EAL domain protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL PAS fold-3 PAS fold-4 PAS fold; SMART: PAS; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(4122052..4124106) Pseudoalteromonas atlantica T6c 4175214 YP_662998.1 CDS Patl_3438 NC_008228.1 4124602 4125276 R KEGG: ehi:19.t00025 hypothetical protein; hypothetical protein complement(4124602..4125276) Pseudoalteromonas atlantica T6c 4175215 YP_662999.1 CDS Patl_3439 NC_008228.1 4125488 4126507 R KEGG: vpa:VPA1488 hypothetical protein; hypothetical protein complement(4125488..4126507) Pseudoalteromonas atlantica T6c 4175216 YP_663000.1 CDS Patl_3440 NC_008228.1 4126663 4127505 D KEGG: pha:PSHAa0339 hypothetical protein; hypothetical protein 4126663..4127505 Pseudoalteromonas atlantica T6c 4175217 YP_663001.1 CDS Patl_3441 NC_008228.1 4127662 4130193 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa1271 TonB-dependent receptor; TonB-dependent receptor complement(4127662..4130193) Pseudoalteromonas atlantica T6c 4175218 YP_663002.1 CDS Patl_3442 NC_008228.1 4130693 4132144 D with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; exonuclease subunit SbcD 4130693..4132144 Pseudoalteromonas atlantica T6c 4175219 YP_663003.1 CDS Patl_3443 NC_008228.1 4132144 4135842 D PFAM: SMC protein-like; KEGG: vfi:VF1168 exonuclease SbcC; SMC protein-like protein 4132144..4135842 Pseudoalteromonas atlantica T6c 4175220 YP_663004.1 CDS Patl_3446 NC_008228.1 4137367 4137651 D PFAM: helix-turn-helix motif; KEGG: ecc:c5477 hypothetical protein; XRE family transcriptional regulator 4137367..4137651 Pseudoalteromonas atlantica T6c 4175223 YP_663005.1 CDS Patl_3448 NC_008228.1 4138629 4139237 D KEGG: eli:ELI_05275 hypothetical protein; hypothetical protein 4138629..4139237 Pseudoalteromonas atlantica T6c 4175225 YP_663006.1 CDS Patl_3450 NC_008228.1 4140711 4140992 R hypothetical protein complement(4140711..4140992) Pseudoalteromonas atlantica T6c 4175227 YP_663007.1 CDS Patl_3451 NC_008228.1 4141105 4142313 D PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase; transposase, IS4 4141105..4142313 Pseudoalteromonas atlantica T6c 4175228 YP_663008.1 CDS Patl_3452 NC_008228.1 4142276 4143835 R KEGG: pst:PSPTO3650 hypothetical protein; hypothetical protein complement(4142276..4143835) Pseudoalteromonas atlantica T6c 4175229 YP_663009.1 CDS Patl_3453 NC_008228.1 4143957 4144598 R KEGG: psb:Psyr_2348 hypothetical protein; hypothetical protein complement(4143957..4144598) Pseudoalteromonas atlantica T6c 4175230 YP_663010.1 CDS Patl_3454 NC_008228.1 4144869 4145486 R hypothetical protein complement(4144869..4145486) Pseudoalteromonas atlantica T6c 4175231 YP_663011.1 CDS Patl_3455 NC_008228.1 4145801 4147093 D PFAM: major facilitator superfamily MFS_1; KEGG: ccr:CC2485 major facilitator family transporter; major facilitator superfamily transporter 4145801..4147093 Pseudoalteromonas atlantica T6c 4175232 YP_663012.1 CDS Patl_3456 NC_008228.1 4147128 4148921 R PFAM: helicase-like type III restriction enzyme, res subunit DEAD/DEAH box helicase-like; KEGG: spt:SPA0627 putative helicase; type III restriction enzyme, res subunit complement(4147128..4148921) Pseudoalteromonas atlantica T6c 4175233 YP_663013.1 CDS Patl_3457 NC_008228.1 4148999 4150171 R PFAM: nucleoside phosphatase GDA1/CD39; KEGG: hsa:954 ectonucleoside triphosphate diphosphohydrolase 2; nucleoside phosphatase GDA1/CD39 complement(4148999..4150171) Pseudoalteromonas atlantica T6c 4175234 YP_663014.1 CDS Patl_3458 NC_008228.1 4150342 4151037 R TIGRFAM: Glutaredoxin, GrxB family; PFAM: glutaredoxin 2-like; KEGG: stm:STM1165 glutaredoxin 2; GrxB family glutaredoxin complement(4150342..4151037) Pseudoalteromonas atlantica T6c 4175235 YP_663015.1 CDS Patl_3459 NC_008228.1 4151323 4153071 D PFAM: gamma-glutamyltranspeptidase; KEGG: ccr:CC0531 gamma-glutamyltransferase; gamma-glutamyltransferase 4151323..4153071 Pseudoalteromonas atlantica T6c 4175236 YP_663016.1 CDS Patl_3460 NC_008228.1 4153428 4153706 R hypothetical protein complement(4153428..4153706) Pseudoalteromonas atlantica T6c 4175237 YP_663017.1 CDS Patl_3461 NC_008228.1 4153740 4154228 R hypothetical protein complement(4153740..4154228) Pseudoalteromonas atlantica T6c 4175238 YP_663018.1 CDS Patl_3462 NC_008228.1 4154233 4154538 R KEGG: pha:PSHAa2514 hypothetical protein; hypothetical protein complement(4154233..4154538) Pseudoalteromonas atlantica T6c 4175239 YP_663019.1 CDS Patl_3463 NC_008228.1 4154948 4155550 R PFAM: protein of unknown function DUF502; KEGG: pca:Pcar_2706 hypothetical protein; hypothetical protein complement(4154948..4155550) Pseudoalteromonas atlantica T6c 4175240 YP_663020.1 CDS Patl_3464 NC_008228.1 4155942 4157519 R PFAM: histidine kinase, HAMP region chemotaxis sensory transducer; KEGG: pfl:PFL_4544 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer complement(4155942..4157519) Pseudoalteromonas atlantica T6c 4175241 YP_663021.1 CDS Patl_3465 NC_008228.1 4157733 4158242 R PFAM: regulatory proteins, AsnC/Lrp; KEGG: mlo:mlr8310 transcriptional regulator; AsnC family transcriptional regulator complement(4157733..4158242) Pseudoalteromonas atlantica T6c 4175242 YP_663022.1 CDS Patl_3466 NC_008228.1 4158456 4160612 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: dde:Dde_1600 receptor precursor-mostly Fe transport; TonB-dependent receptor 4158456..4160612 Pseudoalteromonas atlantica T6c 4175243 YP_663023.1 CDS Patl_3467 NC_008228.1 4160699 4162018 D PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: bha:BH1882 cytosine permease; cytosine/purines uracil thiamine allantoin permease 4160699..4162018 Pseudoalteromonas atlantica T6c 4175244 YP_663024.1 CDS Patl_3468 NC_008228.1 4162182 4163303 D PFAM: protein of unknown function DUF917; KEGG: chy:CHY_1336 hypothetical protein; hypothetical protein 4162182..4163303 Pseudoalteromonas atlantica T6c 4175245 YP_663025.1 CDS Patl_3469 NC_008228.1 4163410 4164135 R TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 pseudouridine synthase; KEGG: ccr:CC1838 ribosomal small subunit pseudouridine synthase A; pseudouridine synthase Rsu complement(4163410..4164135) Pseudoalteromonas atlantica T6c 4175246 YP_663026.1 CDS Patl_3470 NC_008228.1 4164228 4165826 R PFAM: sulfotransferase TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: pha:PSHAb0253 putative orphan protein ; putative tetratricopeptide repeat domain; sulfotransferase complement(4164228..4165826) Pseudoalteromonas atlantica T6c 4175247 YP_663027.1 CDS Patl_3471 NC_008228.1 4165924 4168290 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAb0254 putative outer membrane TonB-dependent receptor; TonB-dependent receptor complement(4165924..4168290) Pseudoalteromonas atlantica T6c 4175248 YP_663028.1 CDS Patl_3472 NC_008228.1 4168942 4170132 R PFAM: globin oxidoreductase FAD/NAD(P)-binding Oxidoreductase FAD-binding region; KEGG: pha:PSHAa2880 two-domains flavohemoprotein: one is a heme-containing oxygen binding domain in the N-terminal region and the other is an FAD-containing reductase domain found in the C-terminal region; globin complement(4168942..4170132) Pseudoalteromonas atlantica T6c 4175249 YP_663029.1 CDS Patl_3473 NC_008228.1 4170228 4171496 R PFAM: NnrS; KEGG: pha:PSHAa2881 integral inner membrane permease; protein NnrS complement(4170228..4171496) Pseudoalteromonas atlantica T6c 4175250 YP_663030.1 CDS Patl_3474 NC_008228.1 4171497 4171826 R KEGG: pha:PSHAa2882 hypothetical protein ; membrane protein; hypothetical protein complement(4171497..4171826) Pseudoalteromonas atlantica T6c 4175251 YP_663031.1 CDS Patl_3475 NC_008228.1 4172076 4173665 D Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 4172076..4173665 Pseudoalteromonas atlantica T6c 4175252 YP_663032.1 CDS Patl_3476 NC_008228.1 4173723 4174688 R PFAM: beta-lactamase-like; KEGG: dar:Daro_2878 beta-lactamase-like; beta-lactamase-like protein complement(4173723..4174688) Pseudoalteromonas atlantica T6c 4175253 YP_663033.1 CDS Patl_3477 NC_008228.1 4175011 4176312 D KEGG: hch:HCH_03096 FOG: PAS/PAC domain; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer PAS fold-3 PAS fold-4 PAS fold; SMART: PAC motif; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 4175011..4176312 Pseudoalteromonas atlantica T6c 4175254 YP_663034.1 CDS Patl_3478 NC_008228.1 4176354 4176800 R catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide; cyanate hydratase complement(4176354..4176800) Pseudoalteromonas atlantica T6c 4175255 YP_663035.1 CDS Patl_3479 NC_008228.1 4176859 4178601 R PFAM: protein kinase protein phosphatase 2C-like; SMART: Tyrosine protein kinase Serine/threonine protein kinase; KEGG: hch:HCH_03181 serine/threonine protein kinase; protein serine/threonine phosphatase-like protein complement(4176859..4178601) Pseudoalteromonas atlantica T6c 4175256 YP_663036.1 CDS Patl_3480 NC_008228.1 4178588 4179454 R PFAM: formate/nitrite transporter; KEGG: tbd:Tbd_1943 putativel formate transporter; formate/nitrite transporter complement(4178588..4179454) Pseudoalteromonas atlantica T6c 4175257 YP_663037.1 CDS Patl_3481 NC_008228.1 4180581 4181126 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(4180581..4181126) Pseudoalteromonas atlantica T6c 4175260 YP_663038.1 CDS Patl_3482 NC_008228.1 4181239 4182267 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 4181239..4182267 Pseudoalteromonas atlantica T6c 4175261 YP_663039.1 CDS psd NC_008228.1 4182428 4183288 D catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 4182428..4183288 Pseudoalteromonas atlantica T6c 4175262 YP_663040.1 CDS Patl_3484 NC_008228.1 4183291 4184157 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: cps:CPS_3514 membrane protein; hypothetical protein 4183291..4184157 Pseudoalteromonas atlantica T6c 4175263 YP_663041.1 CDS Patl_3485 NC_008228.1 4184167 4184892 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cps:CPS_0915 glycerophosphoryl diester phosphodiesterase family protein; glycerophosphoryl diester phosphodiesterase 4184167..4184892 Pseudoalteromonas atlantica T6c 4175264 YP_663042.1 CDS Patl_3486 NC_008228.1 4184958 4185368 R KEGG: cps:CPS_0396 hypothetical protein; hypothetical protein complement(4184958..4185368) Pseudoalteromonas atlantica T6c 4175265 YP_663043.1 CDS Patl_3487 NC_008228.1 4185529 4186809 R KEGG: ppr:PBPRA2469 conserved hypothetical protein; hypothetical protein complement(4185529..4186809) Pseudoalteromonas atlantica T6c 4175266 YP_663044.1 CDS Patl_3488 NC_008228.1 4187062 4188423 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: peptidase M24; KEGG: pha:PSHAb0215 putative metal-dependent dipeptidase; twin-arginine translocation pathway signal protein 4187062..4188423 Pseudoalteromonas atlantica T6c 4175267 YP_663045.1 CDS Patl_3489 NC_008228.1 4188439 4190199 D PFAM: protein of unknown function DUF885; KEGG: pha:PSHAb0132 conserved periplasmic protein of unknown function; hypothetical protein 4188439..4190199 Pseudoalteromonas atlantica T6c 4175268 YP_663046.1 CDS Patl_3490 NC_008228.1 4190417 4192045 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: peptidase U62, modulator of DNA gyrase; KEGG: ccr:CC2823 TldD/PmbA family protein; twin-arginine translocation pathway signal protein 4190417..4192045 Pseudoalteromonas atlantica T6c 4175269 YP_663047.1 CDS Patl_3491 NC_008228.1 4192072 4193406 D PFAM: peptidase U62, modulator of DNA gyrase; KEGG: xcb:XC_0094 TldD protein; C69 family peptidase 4192072..4193406 Pseudoalteromonas atlantica T6c 4175270 YP_663048.1 CDS Patl_3492 NC_008228.1 4193497 4194207 D TIGRFAM: Twin-arginine translocation pathway signal; KEGG: ccr:CC2825 hypothetical protein; twin-arginine translocation pathway signal protein 4193497..4194207 Pseudoalteromonas atlantica T6c 4175271 YP_663049.1 CDS Patl_3493 NC_008228.1 4194257 4195327 D PFAM: ATPase associated with various cellular activities, AAA_3 ATPase associated with various cellular activities, AAA_5; KEGG: xcv:XCV0089 MoxR-like ATPase; ATPase 4194257..4195327 Pseudoalteromonas atlantica T6c 4175272 YP_663050.1 CDS Patl_3494 NC_008228.1 4195330 4196232 D KEGG: xcb:XC_0091 hypothetical protein; hypothetical protein 4195330..4196232 Pseudoalteromonas atlantica T6c 4175273 YP_663051.1 CDS Patl_3495 NC_008228.1 4196235 4197740 D TIGRFAM: conserved hypothetical membrane protein; hypothetical protein 4196235..4197740 Pseudoalteromonas atlantica T6c 4175274 YP_663052.1 CDS Patl_3496 NC_008228.1 4197740 4200142 D KEGG: xcb:XC_0089 hypothetical protein; hypothetical protein 4197740..4200142 Pseudoalteromonas atlantica T6c 4175275 YP_663053.1 CDS Patl_3497 NC_008228.1 4200139 4202292 D KEGG: ccr:CC2830 hypothetical protein; hypothetical protein 4200139..4202292 Pseudoalteromonas atlantica T6c 4175276 YP_663054.1 CDS Patl_3498 NC_008228.1 4202361 4202969 R PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: hch:HCH_01701 multiple antibiotic transporter; multiple antibiotic resistance (MarC)-like protein complement(4202361..4202969) Pseudoalteromonas atlantica T6c 4175277 YP_663055.1 CDS Patl_3499 NC_008228.1 4203269 4203727 R KEGG: vfi:VF1386 acetyltransferase, GNAT family; acetyltransferase complement(4203269..4203727) Pseudoalteromonas atlantica T6c 4175278 YP_663056.1 CDS Patl_3500 NC_008228.1 4203804 4204271 R TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: cps:CPS_3090 YbaK/EbsC protein; ybaK/ebsC protein complement(4203804..4204271) Pseudoalteromonas atlantica T6c 4175279 YP_663057.1 CDS Patl_3501 NC_008228.1 4204304 4205530 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: vvu:VV11553 hypothetical protein; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase complement(4204304..4205530) Pseudoalteromonas atlantica T6c 4175280 YP_663058.1 CDS Patl_3502 NC_008228.1 4205570 4206901 R PFAM: peptidase M24 peptidase M24B, X-Pro dipeptidase/aminopeptidase-like; KEGG: pha:PSHAa0562 proline aminopeptidase P II; peptidase M24 complement(4205570..4206901) Pseudoalteromonas atlantica T6c 4175281 YP_663059.1 CDS Patl_3503 NC_008228.1 4206914 4207483 R TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: pha:PSHAa0561 hypothetical protein; yecA family protein complement(4206914..4207483) Pseudoalteromonas atlantica T6c 4175282 YP_663060.1 CDS Patl_3504 NC_008228.1 4208026 4208436 D hypothetical protein 4208026..4208436 Pseudoalteromonas atlantica T6c 4175283 YP_663061.1 CDS Patl_3505 NC_008228.1 4208531 4209427 D PFAM: PfkB; KEGG: hch:HCH_02313 sugar kinase, ribokinase family; PfkB protein 4208531..4209427 Pseudoalteromonas atlantica T6c 4175284 YP_663062.1 CDS Patl_3506 NC_008228.1 4209449 4210384 D PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: hch:HCH_02314 inosine-uridine nucleoside N-ribohydrolase; inosine/uridine-preferring nucleoside hydrolase 4209449..4210384 Pseudoalteromonas atlantica T6c 4175285 YP_663063.1 CDS Patl_3507 NC_008228.1 4210540 4211136 D PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: vch:VC2479 hypothetical protein; 5-formyltetrahydrofolate cyclo-ligase 4210540..4211136 Pseudoalteromonas atlantica T6c 4175286 YP_663064.1 CDS Patl_3508 NC_008228.1 4211277 4211933 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 4211277..4211933 Pseudoalteromonas atlantica T6c 4175287 YP_663065.1 CDS Patl_3509 NC_008228.1 4212136 4213173 D KEGG: ilo:IL1776 methyl-accepting chemotaxis protein (CHASE3,HAMP,MCP domains); hypothetical protein 4212136..4213173 Pseudoalteromonas atlantica T6c 4175288 YP_663066.1 CDS Patl_3510 NC_008228.1 4213184 4213576 R TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: pha:PSHAa2744 7,8-dihydro-8-oxoguanine-triphosphatase; mutator MutT protein complement(4213184..4213576) Pseudoalteromonas atlantica T6c 4175289 YP_663067.1 CDS Patl_3511 NC_008228.1 4213670 4216399 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(4213670..4216399) Pseudoalteromonas atlantica T6c 4175290 YP_663068.1 CDS Patl_3512 NC_008228.1 4216574 4217473 R PFAM: peptidase M23B; KEGG: cps:CPS_4455 M23/M37 peptidase domain protein; peptidase M23B complement(4216574..4217473) Pseudoalteromonas atlantica T6c 4175291 YP_663069.1 CDS lpxC NC_008228.1 4217612 4218526 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(4217612..4218526) Pseudoalteromonas atlantica T6c 4175292 YP_663070.1 CDS Patl_3514 NC_008228.1 4218703 4219875 R TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase Tubulin/FtsZ-like; KEGG: cps:CPS_4459 cell division protein FtsZ; cell division protein FtsZ complement(4218703..4219875) Pseudoalteromonas atlantica T6c 4175293 YP_663071.1 CDS Patl_3515 NC_008228.1 4219959 4221188 R PFAM: cell division protein FtsA; KEGG: cps:CPS_4461 cell division protein FtsA; cell division protein FtsA complement(4219959..4221188) Pseudoalteromonas atlantica T6c 4175294 YP_663072.1 CDS Patl_3516 NC_008228.1 4221210 4221971 R PFAM: cell division protein FtsQ Polypeptide-transport-associated, FtsQ-type; KEGG: cps:CPS_4462 cell division protein FtsQ; cell division protein FtsQ complement(4221210..4221971) Pseudoalteromonas atlantica T6c 4175295 YP_663073.1 CDS ddl NC_008228.1 4221977 4222933 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase complement(4221977..4222933) Pseudoalteromonas atlantica T6c 4175296 YP_663074.1 CDS murC NC_008228.1 4222930 4224384 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(4222930..4224384) Pseudoalteromonas atlantica T6c 4175297 YP_663075.1 CDS Patl_3519 NC_008228.1 4224381 4225529 R KEGG: son:SO4219 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase, family 28 glycosyltransferase 28-like; UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase complement(4224381..4225529) Pseudoalteromonas atlantica T6c 4175298 YP_663076.1 CDS Patl_3520 NC_008228.1 4225522 4226985 R TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: cps:CPS_4466 cell division protein FtsW; cell division protein FtsW complement(4225522..4226985) Pseudoalteromonas atlantica T6c 4175299 YP_663077.1 CDS Patl_3521 NC_008228.1 4226982 4228307 R TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; KEGG: hin:HI1136 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; UDP-N-acetylmuramoylalanine--D-glutamate ligase complement(4226982..4228307) Pseudoalteromonas atlantica T6c 4175300 YP_663078.1 CDS mraY NC_008228.1 4228323 4229399 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(4228323..4229399) Pseudoalteromonas atlantica T6c 4175301 YP_663079.1 CDS Patl_3523 NC_008228.1 4229399 4230814 R TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase-like cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; KEGG: pha:PSHAa2508 D-alanine:D-alanine-adding enzyme; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase complement(4229399..4230814) Pseudoalteromonas atlantica T6c 4175302 YP_663080.1 CDS Patl_3524 NC_008228.1 4230811 4232403 R TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetases; PFAM: cytoplasmic peptidoglycan synthetase-like cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; KEGG: pmu:PM0137 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; UDP-N-acetylmuramyl-tripeptide synthetases complement(4230811..4232403) Pseudoalteromonas atlantica T6c 4175303 YP_663081.1 CDS Patl_3525 NC_008228.1 4232393 4234153 R PFAM: penicillin-binding protein, transpeptidase Penicillin-binding protein, dimerisation domain; KEGG: cps:CPS_4471 peptidoglycan synthetase FtsI; peptidoglycan glycosyltransferase complement(4232393..4234153) Pseudoalteromonas atlantica T6c 4175304 YP_663082.1 CDS Patl_3526 NC_008228.1 4234150 4234470 R PFAM: cell division protein FtsL; KEGG: vvy:VV0607 cell division protein FtsL; cell division protein FtsL complement(4234150..4234470) Pseudoalteromonas atlantica T6c 4175305 YP_663083.1 CDS mraW NC_008228.1 4234467 4235402 R TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: pha:PSHAa2512 S-adenosyl-methyltransferase; S-adenosyl-methyltransferase MraW complement(4234467..4235402) Pseudoalteromonas atlantica T6c 4175306 YP_663084.1 CDS Patl_3528 NC_008228.1 4235402 4235860 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(4235402..4235860) Pseudoalteromonas atlantica T6c 4175307 YP_663085.1 CDS Patl_3529 NC_008228.1 4236284 4237096 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mll7191 putative oxidoreductase; short-chain dehydrogenase/reductase SDR 4236284..4237096 Pseudoalteromonas atlantica T6c 4175308 YP_663086.1 CDS Patl_3530 NC_008228.1 4237096 4238052 D PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: ccr:CC0785 2-dehydro-3-deoxygalactonokinase; 2-keto-3-deoxy-galactonokinase 4237096..4238052 Pseudoalteromonas atlantica T6c 4175309 YP_663087.1 CDS Patl_3531 NC_008228.1 4238054 4238983 D PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: pfo:Pfl_3453 senescence marker protein-30 (SMP-30); SMP-30/gluconolaconase/LRE-like region 4238054..4238983 Pseudoalteromonas atlantica T6c 4175310 YP_663088.1 CDS Patl_3532 NC_008228.1 4239051 4239785 D PFAM: regulatory protein GntR, HTH GntR-like; KEGG: ccr:CC0783 transcriptional regulator, GntR family; GntR family transcriptional regulator 4239051..4239785 Pseudoalteromonas atlantica T6c 4175311 YP_663089.1 CDS Patl_3533 NC_008228.1 4239824 4241317 D TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: gox:GOX2090 glycerol kinase; glycerol kinase 4239824..4241317 Pseudoalteromonas atlantica T6c 4175312 YP_663090.1 CDS Patl_3534 NC_008228.1 4241314 4242396 D PFAM: Aldose 1-epimerase; KEGG: sco:SCO2407 putative aldose 1-epimerase; aldose 1-epimerase 4241314..4242396 Pseudoalteromonas atlantica T6c 4175313 YP_663091.1 CDS Patl_3535 NC_008228.1 4242477 4243469 R KEGG: pfl:PFL_1898 hypothetical protein; hypothetical protein complement(4242477..4243469) Pseudoalteromonas atlantica T6c 4175314 YP_663092.1 CDS Patl_3536 NC_008228.1 4243715 4244347 R PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase complement(4243715..4244347) Pseudoalteromonas atlantica T6c 4175315 YP_663093.1 CDS Patl_3537 NC_008228.1 4244525 4245151 R hypothetical protein complement(4244525..4245151) Pseudoalteromonas atlantica T6c 4175316 YP_663094.1 CDS Patl_3538 NC_008228.1 4245144 4245653 R PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: pfl:PFL_0173 RNA polymerase sigma-70 factor, ECF subfamily, putative; ECF subfamily RNA polymerase sigma-24 factor complement(4245144..4245653) Pseudoalteromonas atlantica T6c 4175317 YP_663095.1 CDS Patl_3539 NC_008228.1 4245779 4246438 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pha:PSHAa1191 TonB2 protein; iron acquisition via a siderophore-mediated active transport; TonB family protein complement(4245779..4246438) Pseudoalteromonas atlantica T6c 4175318 YP_663096.1 CDS Patl_3540 NC_008228.1 4246624 4248060 R KEGG: bfs:BF1809 sialate O-acetylesterase; hypothetical protein complement(4246624..4248060) Pseudoalteromonas atlantica T6c 4175319 YP_663097.1 CDS Patl_3541 NC_008228.1 4248496 4251525 R KEGG: pfl:PFL_4888 sigma-54 dependent DNA-binding response regulator; TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein sigma-54 factor, interaction region; SMART: ATPase; response regulator receiver protein complement(4248496..4251525) Pseudoalteromonas atlantica T6c 4175320 YP_663098.1 CDS Patl_3542 NC_008228.1 4251522 4253294 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL response regulator receiver; KEGG: noc:Noc_1271 hybrid signal transduction histidine kinase and diguanylate cyclase/phosphodiesterase; response regulator receiver modulated diguanylate cyclase/phosphodiesterase complement(4251522..4253294) Pseudoalteromonas atlantica T6c 4175321 YP_663099.1 CDS Patl_3543 NC_008228.1 4253284 4257780 R PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt Two component regulator propeller Two component regulator three Y; KEGG: cps:CPS_0755 GGDEF domain protein; Hpt sensor hybrid histidine kinase complement(4253284..4257780) Pseudoalteromonas atlantica T6c 4175322 YP_663100.1 CDS Patl_3544 NC_008228.1 4258041 4260176 R PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: cps:CPS_0754 alkaline serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin complement(4258041..4260176) Pseudoalteromonas atlantica T6c 4175323 YP_663101.1 CDS Patl_3545 NC_008228.1 4260675 4262384 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL response regulator receiver; KEGG: cps:CPS_3950 response regulator/GGDEF domain protein; response regulator receiver modulated diguanylate cyclase/phosphodiesterase complement(4260675..4262384) Pseudoalteromonas atlantica T6c 4175324 YP_663102.1 CDS Patl_3546 NC_008228.1 4262437 4263993 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4; KEGG: cps:CPS_3952 sensor histidine kinase; PAS/PAC sensor signal transduction histidine kinase complement(4262437..4263993) Pseudoalteromonas atlantica T6c 4175325 YP_663103.1 CDS Patl_3547 NC_008228.1 4264023 4264439 R PFAM: response regulator receiver; KEGG: lic:LIC12088 response regulator; response regulator receiver protein complement(4264023..4264439) Pseudoalteromonas atlantica T6c 4175326 YP_663104.1 CDS Patl_3548 NC_008228.1 4264442 4265902 R PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: noc:Noc_1703 PAS sensor, signal transduction histidine kinase; sensor signal transduction histidine kinase complement(4264442..4265902) Pseudoalteromonas atlantica T6c 4175327 YP_663105.1 CDS Patl_3549 NC_008228.1 4266100 4266270 D KEGG: pha:PSHAa1740 TonB-dependent receptor; TonB-dependent receptor 4266100..4266270 Pseudoalteromonas atlantica T6c 4175328 YP_663106.1 CDS Patl_3550 NC_008228.1 4266405 4269629 R PFAM: protein of unknown function DUF748; KEGG: son:SO2796 hypothetical protein; hypothetical protein complement(4266405..4269629) Pseudoalteromonas atlantica T6c 4175329 YP_663107.1 CDS Patl_3551 NC_008228.1 4269712 4270311 R KEGG: son:SO4561 hypothetical protein; hypothetical protein complement(4269712..4270311) Pseudoalteromonas atlantica T6c 4175330 YP_663108.1 CDS Patl_3552 NC_008228.1 4270741 4271127 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: eli:ELI_11905 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(4270741..4271127) Pseudoalteromonas atlantica T6c 4175331 YP_663109.1 CDS Patl_3553 NC_008228.1 4271250 4271966 D PFAM: Helix-turn-helix, type 11; KEGG: bmb:BruAb1_1719 hypothetical transcriptional regulator; type 11 helix-turn-helix protein 4271250..4271966 Pseudoalteromonas atlantica T6c 4175332 YP_663110.1 CDS Patl_3554 NC_008228.1 4272077 4272598 R hypothetical protein complement(4272077..4272598) Pseudoalteromonas atlantica T6c 4175333 YP_663111.1 CDS Patl_3555 NC_008228.1 4272618 4273124 R KEGG: gox:GOX0247 hypothetical protein; hypothetical protein complement(4272618..4273124) Pseudoalteromonas atlantica T6c 4175334 YP_663112.1 CDS Patl_3556 NC_008228.1 4273136 4273696 R KEGG: cch:Cag_1238 hypothetical protein; hypothetical protein complement(4273136..4273696) Pseudoalteromonas atlantica T6c 4175335 YP_663113.1 CDS Patl_3557 NC_008228.1 4274310 4275128 D KEGG: nmu:Nmul_A1721 hypothetical protein; hypothetical protein 4274310..4275128 Pseudoalteromonas atlantica T6c 4175336 YP_663114.1 CDS Patl_3558 NC_008228.1 4275156 4277927 D KEGG: rpb:RPB_3790 hypothetical protein; hypothetical protein 4275156..4277927 Pseudoalteromonas atlantica T6c 4175337 YP_663115.1 CDS Patl_3559 NC_008228.1 4278819 4279325 D PFAM: RDD domain containing protein; KEGG: son:SO1371 hypothetical protein; RDD domain-containing protein 4278819..4279325 Pseudoalteromonas atlantica T6c 4175339 YP_663116.1 CDS Patl_3560 NC_008228.1 4279352 4280413 R PFAM: permease YjgP/YjgQ; KEGG: ilo:IL1946 predicted permease; permease YjgP/YjgQ complement(4279352..4280413) Pseudoalteromonas atlantica T6c 4175340 YP_663117.1 CDS Patl_3561 NC_008228.1 4280410 4281516 R PFAM: permease YjgP/YjgQ; KEGG: ilo:IL1947 predicted permease; permease YjgP/YjgQ complement(4280410..4281516) Pseudoalteromonas atlantica T6c 4175341 YP_663118.1 CDS Patl_3562 NC_008228.1 4281804 4283309 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 4281804..4283309 Pseudoalteromonas atlantica T6c 4175342 YP_663119.1 CDS Patl_3563 NC_008228.1 4283336 4283806 D PFAM: DNA polymerase III chi subunit, HolC; KEGG: plu:plu4482 DNA polymerase III, chi subunit; DNA polymerase III chi subunit, HolC 4283336..4283806 Pseudoalteromonas atlantica T6c 4175343 YP_663120.1 CDS valS NC_008228.1 4283833 4286598 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 4283833..4286598 Pseudoalteromonas atlantica T6c 4175344 YP_663121.1 CDS Patl_3565 NC_008228.1 4286964 4288439 D PFAM: 5'-Nucleotidase-like; KEGG: mag:amb3606 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterase; 5'-nucleotidase 4286964..4288439 Pseudoalteromonas atlantica T6c 4175345 YP_663122.1 CDS Patl_3566 NC_008228.1 4288432 4290117 D TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein histidine kinase, HAMP region; KEGG: mag:amb4000 response regulator containing a CheY-like receiver domain and a GGDEF domain; diguanylate cyclase 4288432..4290117 Pseudoalteromonas atlantica T6c 4175346 YP_663123.1 CDS Patl_3567 NC_008228.1 4290160 4290693 R KEGG: cps:CPS_0968 hypothetical protein; hypothetical protein complement(4290160..4290693) Pseudoalteromonas atlantica T6c 4175347 YP_663124.1 CDS Patl_3568 NC_008228.1 4291096 4292466 R KEGG: son:SO4018 hypothetical protein; hypothetical protein complement(4291096..4292466) Pseudoalteromonas atlantica T6c 4175348 YP_663125.1 CDS Patl_3569 NC_008228.1 4292717 4293595 D PFAM: MltA-interacting MipA; KEGG: son:SO3592 putative outer membrane protein; MltA-interacting MipA 4292717..4293595 Pseudoalteromonas atlantica T6c 4175349 YP_663126.1 CDS Patl_3570 NC_008228.1 4293635 4294015 D hypothetical protein 4293635..4294015 Pseudoalteromonas atlantica T6c 4175350 YP_663127.1 CDS Patl_3571 NC_008228.1 4294015 4294713 D PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: cps:CPS_3172 DNA-binding response regulator; two component transcriptional regulator 4294015..4294713 Pseudoalteromonas atlantica T6c 4175351 YP_663128.1 CDS Patl_3572 NC_008228.1 4294723 4295976 D PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: cps:CPS_3170 sensor histidine kinase; sensor signal transduction histidine kinase 4294723..4295976 Pseudoalteromonas atlantica T6c 4175352 YP_663129.1 CDS Patl_3573 NC_008228.1 4296136 4297563 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: ilo:IL2573 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 4296136..4297563 Pseudoalteromonas atlantica T6c 4175353 YP_663130.1 CDS Patl_3574 NC_008228.1 4297563 4298528 D catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 4297563..4298528 Pseudoalteromonas atlantica T6c 4175354 YP_663131.1 CDS Patl_3575 NC_008228.1 4298662 4299285 D PFAM: DSBA oxidoreductase; KEGG: cps:CPS_4348 thiol:disulfide interchange protein DsbA; DSBA oxidoreductase 4298662..4299285 Pseudoalteromonas atlantica T6c 4175355 YP_663132.1 CDS Patl_3576 NC_008228.1 4299616 4301070 D TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: tdn:Tmden_0836 diguanylate cyclase (GGDEF domain); diguanylate cyclase 4299616..4301070 Pseudoalteromonas atlantica T6c 4175356 YP_663133.1 CDS Patl_3577 NC_008228.1 4301054 4301722 R TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; KEGG: vpa:VP0500 uracil-DNA glycosylase; uracil-DNA glycosylase complement(4301054..4301722) Pseudoalteromonas atlantica T6c 4175357 YP_663134.1 CDS Patl_3578 NC_008228.1 4301753 4303036 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(4301753..4303036) Pseudoalteromonas atlantica T6c 4175358 YP_663135.1 CDS Patl_3579 NC_008228.1 4303085 4304080 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase complement(4303085..4304080) Pseudoalteromonas atlantica T6c 4175359 YP_663136.1 CDS thrA NC_008228.1 4304080 4306542 R multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I complement(4304080..4306542) Pseudoalteromonas atlantica T6c 4175360 YP_663137.1 CDS Patl_3581 NC_008228.1 4307236 4308621 R PFAM: Nucleotidyl transferase; KEGG: son:SO1498 glucose-1-phosphate adenylyltransferase; glucose-1-phosphate adenylyltransferase complement(4307236..4308621) Pseudoalteromonas atlantica T6c 4175361 YP_663138.1 CDS Patl_3582 NC_008228.1 4308709 4309209 R PFAM: heat shock protein Hsp20; KEGG: bja:blr7961 probable HspC2 heat shock protein; heat shock protein Hsp20 complement(4308709..4309209) Pseudoalteromonas atlantica T6c 4175362 YP_663139.1 CDS Patl_3583 NC_008228.1 4309943 4311136 D PFAM: GAF ATP-binding region, ATPase-like histidine kinase A-like; KEGG: psb:Psyr_3773 GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal; GAF sensor signal transduction histidine kinase 4309943..4311136 Pseudoalteromonas atlantica T6c 4175363 YP_663140.1 CDS Patl_3584 NC_008228.1 4312079 4313320 D PFAM: Radical SAM; KEGG: xcb:XC_3736 hypothetical protein; radical SAM family protein 4312079..4313320 Pseudoalteromonas atlantica T6c 4175364 YP_663141.1 CDS Patl_3585 NC_008228.1 4313337 4314131 D KEGG: rba:RB3915 putative DNA polymerase related protein; putative DNA polymerase-like protein 4313337..4314131 Pseudoalteromonas atlantica T6c 4175365 YP_663142.1 CDS Patl_3586 NC_008228.1 4314183 4314929 R hypothetical protein complement(4314183..4314929) Pseudoalteromonas atlantica T6c 4175366 YP_663143.1 CDS Patl_3587 NC_008228.1 4315354 4316658 R hypothetical protein complement(4315354..4316658) Pseudoalteromonas atlantica T6c 4175367 YP_663144.1 CDS Patl_3588 NC_008228.1 4317862 4318146 D hypothetical protein 4317862..4318146 Pseudoalteromonas atlantica T6c 4175368 YP_663145.1 CDS Patl_3589 NC_008228.1 4318553 4320739 D KEGG: hpy:HP1520 hypothetical protein; hypothetical protein 4318553..4320739 Pseudoalteromonas atlantica T6c 4175369 YP_663146.1 CDS Patl_3590 NC_008228.1 4321406 4324315 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(4321406..4324315) Pseudoalteromonas atlantica T6c 4175370 YP_663147.1 CDS Patl_3591 NC_008228.1 4324520 4324909 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(4324520..4324909) Pseudoalteromonas atlantica T6c 4175371 YP_663148.1 CDS gcvT NC_008228.1 4324982 4326061 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(4324982..4326061) Pseudoalteromonas atlantica T6c 4175372 YP_663149.1 CDS Patl_3593 NC_008228.1 4326203 4327054 D PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pha:PSHAa2477 bacterial regulatory protein; LysR family transcriptional regulator 4326203..4327054 Pseudoalteromonas atlantica T6c 4175373 YP_663150.1 CDS Patl_3594 NC_008228.1 4327750 4328823 R KEGG: cps:CPS_5029 putative general secretion pathway protein A; putative general secretion pathway protein A complement(4327750..4328823) Pseudoalteromonas atlantica T6c 4175374 YP_663151.1 CDS Patl_3595 NC_008228.1 4329049 4329699 R TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III related proteins; KEGG: vvu:VV11043 hemolysin; hemolysin III family channel protein complement(4329049..4329699) Pseudoalteromonas atlantica T6c 4175375 YP_663152.1 CDS Patl_3596 NC_008228.1 4329783 4330649 R KEGG: noc:Noc_0660 hypothetical protein; hypothetical protein complement(4329783..4330649) Pseudoalteromonas atlantica T6c 4175376 YP_663153.1 CDS Patl_3597 NC_008228.1 4330795 4334001 R PFAM: acriflavin resistance protein; KEGG: hch:HCH_04131 cation/multidrug efflux pump; acriflavin resistance protein complement(4330795..4334001) Pseudoalteromonas atlantica T6c 4175377 YP_663154.1 CDS Patl_3598 NC_008228.1 4333998 4335239 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: hch:HCH_04132 membrane-fusion protein; RND family efflux transporter MFP subunit complement(4333998..4335239) Pseudoalteromonas atlantica T6c 4175378 YP_663155.1 CDS Patl_3599 NC_008228.1 4335236 4336594 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: hch:HCH_04133 outer membrane protein; RND efflux system outer membrane lipoprotein complement(4335236..4336594) Pseudoalteromonas atlantica T6c 4175379 YP_663156.1 CDS Patl_3600 NC_008228.1 4336676 4337155 D PFAM: Excinuclease ABC, C subunit-like; KEGG: son:SO0145 hypothetical URI domain endonuclease; excinuclease ABC subunit C 4336676..4337155 Pseudoalteromonas atlantica T6c 4175380 YP_663157.1 CDS Patl_3601 NC_008228.1 4337214 4340114 D catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 4337214..4340114 Pseudoalteromonas atlantica T6c 4175381 YP_663158.1 CDS Patl_3602 NC_008228.1 4340125 4340742 R KEGG: pha:PSHAa2594 hypothetical protein; hypothetical protein complement(4340125..4340742) Pseudoalteromonas atlantica T6c 4175382 YP_663159.1 CDS Patl_3603 NC_008228.1 4340833 4341765 R TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: cps:CPS_4183 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase complement(4340833..4341765) Pseudoalteromonas atlantica T6c 4175383 YP_663160.1 CDS Patl_3604 NC_008228.1 4342028 4345546 D KEGG: hch:HCH_00794 FOG: PAS/PAC domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; PAS/PAC sensor hybrid histidine kinase 4342028..4345546 Pseudoalteromonas atlantica T6c 4175384 YP_663161.1 CDS Patl_3605 NC_008228.1 4345570 4345827 R KEGG: pha:PSHAb0423 hypothetical protein; hypothetical protein complement(4345570..4345827) Pseudoalteromonas atlantica T6c 4175385 YP_663162.1 CDS Patl_3606 NC_008228.1 4346165 4347424 R PFAM: beta-lactamase; KEGG: ccr:CC1568 hypothetical protein; beta-lactamase complement(4346165..4347424) Pseudoalteromonas atlantica T6c 4175386 YP_663163.1 CDS Patl_3607 NC_008228.1 4347602 4347832 R PFAM: ChaB; KEGG: nmu:Nmul_A2443 ChaB; ChaB protein complement(4347602..4347832) Pseudoalteromonas atlantica T6c 4175387 YP_663164.1 CDS Patl_3608 NC_008228.1 4348039 4348983 R PFAM: protein of unknown function DUF808; KEGG: pfo:Pfl_1601 protein of unknown function DUF808; hypothetical protein complement(4348039..4348983) Pseudoalteromonas atlantica T6c 4175388 YP_663165.1 CDS Patl_3609 NC_008228.1 4349036 4349803 R PFAM: protein of unknown function DUF610, YibQ; KEGG: son:SO0046 hypothetical protein; hypothetical protein complement(4349036..4349803) Pseudoalteromonas atlantica T6c 4175389 YP_663166.1 CDS Patl_3610 NC_008228.1 4349820 4350911 R PFAM: peptidase M23B; KEGG: pha:PSHAa0365 protease; peptidase M23B complement(4349820..4350911) Pseudoalteromonas atlantica T6c 4175390 YP_663167.1 CDS Patl_3611 NC_008228.1 4350974 4352509 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(4350974..4352509) Pseudoalteromonas atlantica T6c 4175391 YP_663168.1 CDS Patl_3612 NC_008228.1 4352780 4353205 D PFAM: Rhodanese-like; KEGG: cps:CPS_4390 rhodanese domain protein; rhodanese-like protein 4352780..4353205 Pseudoalteromonas atlantica T6c 4175392 YP_663169.1 CDS Patl_3613 NC_008228.1 4353224 4353481 D TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: pha:PSHAa0368 glutaredoxin; glutaredoxin 3 4353224..4353481 Pseudoalteromonas atlantica T6c 4175393 YP_663170.1 CDS Patl_3614 NC_008228.1 4353504 4354013 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 4353504..4354013 Pseudoalteromonas atlantica T6c 4175394 YP_663171.1 CDS Patl_3615 NC_008228.1 4354025 4355023 D PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase-like Ketopantoate reductase ApbA/PanE-like; KEGG: pha:PSHAa0370 glycerol-3-phosphate dehydrogenase (NAD+); glycerol-3-phosphate dehydrogenase (NAD(P)+) 4354025..4355023 Pseudoalteromonas atlantica T6c 4175395 YP_663172.1 CDS Patl_3616 NC_008228.1 4355160 4355603 R PFAM: YiaAB two helix; KEGG: xoo:XOO4114 membrane protein; hypothetical protein complement(4355160..4355603) Pseudoalteromonas atlantica T6c 4175396 YP_663173.1 CDS Patl_3617 NC_008228.1 4355808 4356665 R KEGG: hch:HCH_01598 hypothetical protein; hypothetical protein complement(4355808..4356665) Pseudoalteromonas atlantica T6c 4175397 YP_663174.1 CDS Patl_3618 NC_008228.1 4356665 4356898 R hypothetical protein complement(4356665..4356898) Pseudoalteromonas atlantica T6c 4175398 YP_663175.1 CDS Patl_3619 NC_008228.1 4357223 4357990 D SMART: Helix-turn-helix type 3; KEGG: hch:HCH_00179 protein containing HTH domain; XRE family transcriptional regulator 4357223..4357990 Pseudoalteromonas atlantica T6c 4175399 YP_663176.1 CDS Patl_3620 NC_008228.1 4358103 4358876 R PFAM: protein of unknown function DUF328; KEGG: vpa:VP0504 hypothetical protein; hypothetical protein complement(4358103..4358876) Pseudoalteromonas atlantica T6c 4175400 YP_663177.1 CDS Patl_3621 NC_008228.1 4359099 4359596 R hypothetical protein complement(4359099..4359596) Pseudoalteromonas atlantica T6c 4175401 YP_663178.1 CDS Patl_3622 NC_008228.1 4359823 4360776 D KEGG: son:SO3546 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B 4359823..4360776 Pseudoalteromonas atlantica T6c 4175402 YP_663179.1 CDS pgi NC_008228.1 4360858 4362501 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 4360858..4362501 Pseudoalteromonas atlantica T6c 4175403 YP_663180.1 CDS Patl_3624 NC_008228.1 4362600 4363691 R KEGG: pha:PSHAb0037 hypothetical protein; hypothetical protein complement(4362600..4363691) Pseudoalteromonas atlantica T6c 4175404 YP_663181.1 CDS Patl_3625 NC_008228.1 4363701 4364765 R PFAM: secretion protein HlyD; KEGG: pae:PA3360 probable secretion protein; secretion protein HlyD complement(4363701..4364765) Pseudoalteromonas atlantica T6c 4175405 YP_663182.1 CDS Patl_3626 NC_008228.1 4364768 4365250 R PFAM: regulatory protein, MarR; KEGG: pha:PSHAb0035 putative transcriptional regulator (MarR family); MarR family transcriptional regulator complement(4364768..4365250) Pseudoalteromonas atlantica T6c 4175406 YP_663183.1 CDS Patl_3627 NC_008228.1 4365763 4367997 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_4488 TonB-dependent receptor; TonB-dependent receptor 4365763..4367997 Pseudoalteromonas atlantica T6c 4175407 YP_663184.1 CDS Patl_3628 NC_008228.1 4368142 4369269 R PFAM: aminotransferase, class I and II; KEGG: pca:Pcar_3031 putative aminotransferase; class I and II aminotransferase complement(4368142..4369269) Pseudoalteromonas atlantica T6c 4175408 YP_663185.1 CDS Patl_3629 NC_008228.1 4369289 4369678 R PFAM: response regulator receiver; KEGG: ppu:PP5324 response regulator; response regulator receiver protein complement(4369289..4369678) Pseudoalteromonas atlantica T6c 4175409 YP_663186.1 CDS Patl_3630 NC_008228.1 4369732 4372092 R Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II complement(4369732..4372092) Pseudoalteromonas atlantica T6c 4175410 YP_663187.1 CDS Patl_3631 NC_008228.1 4372109 4373995 R KEGG: bba:Bd3766 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; diguanylate cyclase complement(4372109..4373995) Pseudoalteromonas atlantica T6c 4175411 YP_663188.1 CDS Patl_3632 NC_008228.1 4374453 4374848 R KEGG: son:SO3645 hypothetical protein; hypothetical protein complement(4374453..4374848) Pseudoalteromonas atlantica T6c 4175412 YP_663189.1 CDS Patl_3633 NC_008228.1 4375084 4376163 D PFAM: Semialdehyde dehydrogenase, NAD - binding oxidoreductase-like; KEGG: hch:HCH_02553 predicted dehydrogenase and related protein; oxidoreductase-like protein 4375084..4376163 Pseudoalteromonas atlantica T6c 4175413 YP_663190.1 CDS rbgA NC_008228.1 4376168 4377172 R essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase complement(4376168..4377172) Pseudoalteromonas atlantica T6c 4175414 YP_663191.1 CDS Patl_3635 NC_008228.1 4377530 4379785 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2119 TonB-dependent receptor; TonB-dependent receptor, plug 4377530..4379785 Pseudoalteromonas atlantica T6c 4175415 YP_663192.1 CDS Patl_3636 NC_008228.1 4379994 4380395 D hypothetical protein 4379994..4380395 Pseudoalteromonas atlantica T6c 4175416 YP_663193.1 CDS Patl_3637 NC_008228.1 4380469 4381527 D KEGG: rba:RB356 hypothetical protein; hypothetical protein 4380469..4381527 Pseudoalteromonas atlantica T6c 4175417 YP_663194.1 CDS Patl_3638 NC_008228.1 4382227 4385208 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2457 TonB-dependent receptor; TonB-dependent receptor 4382227..4385208 Pseudoalteromonas atlantica T6c 4175418 YP_663195.1 CDS Patl_3639 NC_008228.1 4385393 4386520 D KEGG: pha:PSHAa0571 alginate lyase; poly(beta-D-mannuronate) lyase 4385393..4386520 Pseudoalteromonas atlantica T6c 4175419 YP_663196.1 CDS Patl_3640 NC_008228.1 4386604 4388874 D KEGG: pha:PSHAa1749 alginate lyase precursor; poly(beta-D-mannuronate) lyase 4386604..4388874 Pseudoalteromonas atlantica T6c 4175420 YP_663197.1 CDS Patl_3641 NC_008228.1 4389008 4389769 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mta:Moth_0426 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 4389008..4389769 Pseudoalteromonas atlantica T6c 4175421 YP_663198.1 CDS Patl_3642 NC_008228.1 4389803 4390237 D PFAM: RbsD or FucU transport; KEGG: rba:RB3237 fucose operon fucU protein; transporter 4389803..4390237 Pseudoalteromonas atlantica T6c 4175422 YP_663199.1 CDS Patl_3643 NC_008228.1 4390339 4391577 D PFAM: natural resistance-associated macrophage protein; KEGG: ssp:SSP2176 putative Mn2+ Fe2+ transporter; natural resistance-associated macrophage protein 4390339..4391577 Pseudoalteromonas atlantica T6c 4175423 YP_663200.1 CDS Patl_3644 NC_008228.1 4391600 4392088 D TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: ana:alr3086 gluconokinase; carbohydrate kinase 4391600..4392088 Pseudoalteromonas atlantica T6c 4175424 YP_663201.1 CDS Patl_3645 NC_008228.1 4392160 4393233 D KEGG: pha:PSHAa0571 alginate lyase; alginate lyase 4392160..4393233 Pseudoalteromonas atlantica T6c 4175425 YP_663202.1 CDS Patl_3646 NC_008228.1 4393404 4394525 R KEGG: tte:TTE1751 phosphomannose isomerase; phosphomannose isomerase-like protein complement(4393404..4394525) Pseudoalteromonas atlantica T6c 4175426 YP_663203.1 CDS Patl_3647 NC_008228.1 4394633 4395889 R PFAM: natural resistance-associated macrophage protein; KEGG: ssp:SSP2176 putative Mn2+ Fe2+ transporter; natural resistance-associated macrophage protein complement(4394633..4395889) Pseudoalteromonas atlantica T6c 4175427 YP_663204.1 CDS Patl_3648 NC_008228.1 4396010 4397209 R catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase complement(4396010..4397209) Pseudoalteromonas atlantica T6c 4175428 YP_663205.1 CDS Patl_3649 NC_008228.1 4397252 4398709 R PFAM: Mannitol dehydrogenase-like Mannitol dehydrogenase rossman-like; KEGG: xac:XAC4232 mannitol dehydrogenase; mannitol dehydrogenase Rossman-like protein complement(4397252..4398709) Pseudoalteromonas atlantica T6c 4175429 YP_663206.1 CDS Patl_3650 NC_008228.1 4399376 4402414 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3737 TonB-dependent receptor; TonB-dependent receptor 4399376..4402414 Pseudoalteromonas atlantica T6c 4175430 YP_663207.1 CDS Patl_3651 NC_008228.1 4402691 4404937 D PFAM: Heparinase II/III-like; KEGG: pha:PSHAa1748 chondroitin AC/alginate lyase; heparinase II/III-like protein 4402691..4404937 Pseudoalteromonas atlantica T6c 4175431 YP_663208.1 CDS Patl_3652 NC_008228.1 4405076 4406230 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ilo:IL2587 cation efflux system component; cation diffusion facilitator family transporter complement(4405076..4406230) Pseudoalteromonas atlantica T6c 4175432 YP_663209.1 CDS Patl_3653 NC_008228.1 4406248 4406658 D hypothetical protein 4406248..4406658 Pseudoalteromonas atlantica T6c 4175433 YP_663210.1 CDS Patl_3654 NC_008228.1 4406812 4408197 R PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: rba:RB12290 NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunit beta complement(4406812..4408197) Pseudoalteromonas atlantica T6c 4175434 YP_663211.1 CDS Patl_3655 NC_008228.1 4408210 4408491 R KEGG: rba:RB12291 probable NAD(P) transhydrogenase subunit alpha; putative NAD(P) transhydrogenase subunit alpha complement(4408210..4408491) Pseudoalteromonas atlantica T6c 4175435 YP_663212.1 CDS Patl_3656 NC_008228.1 4408491 4409660 R PFAM: alanine dehydrogenase/PNT-like; KEGG: rba:RB12292 NAD(P) transhydrogenase subunit alpha; alanine dehydrogenase/PNT-like protein complement(4408491..4409660) Pseudoalteromonas atlantica T6c 4175436 YP_663213.1 CDS Patl_3657 NC_008228.1 4409816 4410739 R PFAM: PfkB; KEGG: pha:PSHAa1745 ketodeoxygluconokinase; PfkB protein complement(4409816..4410739) Pseudoalteromonas atlantica T6c 4175437 YP_663214.1 CDS Patl_3658 NC_008228.1 4410804 4412102 R PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa1746 putative hexuronate transport protein (MFS family); major facilitator superfamily transporter complement(4410804..4412102) Pseudoalteromonas atlantica T6c 4175438 YP_663215.1 CDS Patl_3659 NC_008228.1 4412160 4414424 R KEGG: pha:PSHAa1749 alginate lyase precursor; poly(beta-D-mannuronate) lyase complement(4412160..4414424) Pseudoalteromonas atlantica T6c 4175439 YP_663216.1 CDS Patl_3660 NC_008228.1 4414948 4415685 D PFAM: regulatory protein GntR, HTH GntR-like; KEGG: pha:PSHAa1739 regulatory protein, GntR; GntR family transcriptional regulator 4414948..4415685 Pseudoalteromonas atlantica T6c 4175440 YP_663217.1 CDS Patl_3661 NC_008228.1 4415783 4416529 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: atc:AGR_L_3556 hypothetical protein; short-chain dehydrogenase/reductase SDR complement(4415783..4416529) Pseudoalteromonas atlantica T6c 4175441 YP_663218.1 CDS Patl_3662 NC_008228.1 4416901 4418088 R PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: bbr:BB2778 putative monooxygenase; monooxygenase complement(4416901..4418088) Pseudoalteromonas atlantica T6c 4175442 YP_663219.1 CDS Patl_3663 NC_008228.1 4418284 4420452 R PFAM: protein of unknown function DUF323 Methyltransferase type 11 Methyltransferase type 12; KEGG: son:SO4465 hypothetical protein; hypothetical protein complement(4418284..4420452) Pseudoalteromonas atlantica T6c 4175443 YP_663220.1 CDS Patl_3664 NC_008228.1 4420470 4421597 R KEGG: cps:CPS_0604 hypothetical protein; hypothetical protein complement(4420470..4421597) Pseudoalteromonas atlantica T6c 4175444 YP_663221.1 CDS Patl_3665 NC_008228.1 4421790 4422779 R PFAM: Mg2+ transporter protein, CorA-like; KEGG: tcx:Tcr_0935 Mg2+ transporter protein, CorA-like; CorA-like Mg2+ transporter protein complement(4421790..4422779) Pseudoalteromonas atlantica T6c 4175445 YP_663222.1 CDS Patl_3666 NC_008228.1 4423032 4423937 D TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201 RimK-like ATP-grasp; KEGG: vpa:VPA0173 ribosomal protein S6 modification protein; alpha-L-glutamate ligase 4423032..4423937 Pseudoalteromonas atlantica T6c 4175446 YP_663223.1 CDS Patl_3667 NC_008228.1 4424009 4424458 D PFAM: protein of unknown function DUF785; KEGG: vpa:VPA0172 hypothetical protein; hypothetical protein 4424009..4424458 Pseudoalteromonas atlantica T6c 4175447 YP_663224.1 CDS Patl_3668 NC_008228.1 4424721 4425263 D KEGG: pha:PSHAb0144 conserved protein of unknown function ; putative secreted protein; hypothetical protein 4424721..4425263 Pseudoalteromonas atlantica T6c 4175448 YP_663225.1 CDS Patl_3669 NC_008228.1 4425328 4426230 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein response regulator receiver; KEGG: cvi:CV3504 probable two-component response regulator; diguanylate cyclase complement(4425328..4426230) Pseudoalteromonas atlantica T6c 4175449 YP_663226.1 CDS Patl_3670 NC_008228.1 4426818 4427411 D PFAM: regulatory protein, TetR; KEGG: vfi:VF1081 transcriptional regulator, TetR family; TetR family transcriptional regulator 4426818..4427411 Pseudoalteromonas atlantica T6c 4175450 YP_663227.1 CDS Patl_3671 NC_008228.1 4427713 4428546 D PFAM: MscS Mechanosensitive ion channel; KEGG: hch:HCH_00764 small-conductance mechanosensitive channel; mechanosensitive ion channel protein MscS 4427713..4428546 Pseudoalteromonas atlantica T6c 4175451 YP_663228.1 CDS Patl_3672 NC_008228.1 4428761 4429906 R PFAM: iron-containing alcohol dehydrogenase; KEGG: pha:PSHAa0574 alcohol dehydrogenase with dehydroquinate synthase-like domain; iron-containing alcohol dehydrogenase complement(4428761..4429906) Pseudoalteromonas atlantica T6c 4175452 YP_663229.1 CDS Patl_3673 NC_008228.1 4430094 4430984 D PFAM: helix-turn-helix, AraC type AraC-type transcriptional regulator-like; KEGG: pha:PSHAa0573 transcriptional regulator; AraC family transcriptional regulator 4430094..4430984 Pseudoalteromonas atlantica T6c 4175453 YP_663230.1 CDS Patl_3674 NC_008228.1 4430970 4432727 R PFAM: glycosyl transferase, family 39; KEGG: son:SO4690 hypothetical protein; glycosyl transferase family protein complement(4430970..4432727) Pseudoalteromonas atlantica T6c 4175454 YP_663231.1 CDS Patl_3675 NC_008228.1 4432752 4433471 R KEGG: mag:amb4206 hypothetical protein; hypothetical protein complement(4432752..4433471) Pseudoalteromonas atlantica T6c 4175455 YP_663232.1 CDS Patl_3676 NC_008228.1 4433475 4434191 R PFAM: glycosyl transferase, family 2; KEGG: son:SO4688 glycosyl transferase, group 2 family protein; glycosyl transferase family protein complement(4433475..4434191) Pseudoalteromonas atlantica T6c 4175456 YP_663233.1 CDS Patl_3677 NC_008228.1 4434361 4435308 R PFAM: response regulator receiver; KEGG: mac:MA3068 chemotaxis response regulator; response regulator receiver protein complement(4434361..4435308) Pseudoalteromonas atlantica T6c 4175457 YP_663234.1 CDS Patl_3678 NC_008228.1 4435550 4437838 R PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: gox:GOX0587 membrane-bound aldehyde dehydrogenase, large subunit; aldehyde oxidase and xanthine dehydrogenase complement(4435550..4437838) Pseudoalteromonas atlantica T6c 4175458 YP_663235.1 CDS Patl_3679 NC_008228.1 4437840 4438337 R PFAM: ferredoxin [2Fe-2S]-binding; KEGG: bja:blr0840 putative aldehyde dehydrogenase subunit III; (2Fe-2S)-binding protein complement(4437840..4438337) Pseudoalteromonas atlantica T6c 4175459 YP_663236.1 CDS Patl_3680 NC_008228.1 4438651 4439499 R YghU; B2989; one of eight putative glutathione transferase proteins from E. coli; putative glutathione S-transferase YghU complement(4438651..4439499) Pseudoalteromonas atlantica T6c 4175460 YP_663237.1 CDS Patl_3681 NC_008228.1 4439677 4440453 R PFAM: SapC; KEGG: cps:CPS_0151 hypothetical protein; protein SapC protein complement(4439677..4440453) Pseudoalteromonas atlantica T6c 4175461 YP_663238.1 CDS Patl_3682 NC_008228.1 4440756 4442396 R PFAM: FAD dependent oxidoreductase; KEGG: pha:PSHAb0547 putative oxygen-dependent membrane associated glycerol-3-phosphate dehydrogenase; FAD dependent oxidoreductase complement(4440756..4442396) Pseudoalteromonas atlantica T6c 4175462 YP_663239.1 CDS Patl_3683 NC_008228.1 4442429 4443889 R TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: eli:ELI_03520 putative sodium/myo-inositol cotransporter; SSS family solute/sodium (Na+) symporter complement(4442429..4443889) Pseudoalteromonas atlantica T6c 4175463 YP_663240.1 CDS Patl_3684 NC_008228.1 4444001 4444765 R KEGG: cps:CPS_0240 hypothetical protein; hypothetical protein complement(4444001..4444765) Pseudoalteromonas atlantica T6c 4175464 YP_663241.1 CDS Patl_3685 NC_008228.1 4444768 4446351 R PFAM: tryptophan halogenase; KEGG: cps:CPS_0239 putative tryptophan halogenase; tryptophan halogenase complement(4444768..4446351) Pseudoalteromonas atlantica T6c 4175465 YP_663242.1 CDS Patl_3686 NC_008228.1 4446550 4449309 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0238 TonB-dependent receptor; TonB-dependent receptor complement(4446550..4449309) Pseudoalteromonas atlantica T6c 4175466 YP_663243.1 CDS Patl_3687 NC_008228.1 4449848 4452004 D PFAM: glycoside hydrolase, clan GH-D; KEGG: eli:ELI_03515 alpha-galactosidase; glycoside hydrolase 4449848..4452004 Pseudoalteromonas atlantica T6c 4175467 YP_663244.1 CDS Patl_3688 NC_008228.1 4452315 4453514 D PFAM: peptidase M19, renal dipeptidase; KEGG: pha:PSHAa2910 periplasmic dipeptidase; membrane dipeptidase 4452315..4453514 Pseudoalteromonas atlantica T6c 4175468 YP_663245.1 CDS Patl_3689 NC_008228.1 4453618 4454910 R PFAM: Platelet-activating factor acetylhydrolase, plasma/intracellular isoform II; KEGG: syf:Synpcc7942_0391 hypothetical protein; platelet-activating factor acetylhydrolase, plasma/intracellular isoform II complement(4453618..4454910) Pseudoalteromonas atlantica T6c 4175469 YP_663246.1 CDS Patl_3690 NC_008228.1 4455022 4455675 R PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: cps:CPS_4923 oxidoreductase, 2OG-Fe(II) oxygenase family; 2OG-Fe(II) oxygenase complement(4455022..4455675) Pseudoalteromonas atlantica T6c 4175470 YP_663247.1 CDS Patl_3691 NC_008228.1 4455751 4456248 R KEGG: dar:Daro_4065 hypothetical protein; hypothetical protein complement(4455751..4456248) Pseudoalteromonas atlantica T6c 4175471 YP_663248.1 CDS Patl_3692 NC_008228.1 4456317 4457162 R TIGRFAM: Protein of unknown function UPF0011; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ppr:PBPRA3226 putative methyltransferase; hypothetical protein complement(4456317..4457162) Pseudoalteromonas atlantica T6c 4175472 YP_663249.1 CDS Patl_3693 NC_008228.1 4457315 4459291 D PFAM: LppC putative lipoprotein; KEGG: cps:CPS_4432 conserved hypothetical protein; LppC putative lipoprotein 4457315..4459291 Pseudoalteromonas atlantica T6c 4175473 YP_663250.1 CDS Patl_3694 NC_008228.1 4459308 4459652 D PFAM: protein of unknown function UPF0102; KEGG: lpn:lpg2994 predicted endonuclease; hypothetical protein 4459308..4459652 Pseudoalteromonas atlantica T6c 4175474 YP_663251.1 CDS Patl_3695 NC_008228.1 4459676 4460269 D TIGRFAM: phosphoheptose isomerase; KEGG: son:SO0298 phosphoheptose isomerase; phosphoheptose isomerase 4459676..4460269 Pseudoalteromonas atlantica T6c 4175475 YP_663252.1 CDS Patl_3696 NC_008228.1 4460274 4460852 D PFAM: transport-associated; KEGG: pha:PSHAa2525 hypothetical protein; transport-associated protein 4460274..4460852 Pseudoalteromonas atlantica T6c 4175476 YP_663253.1 CDS Patl_3697 NC_008228.1 4461144 4461569 R PFAM: Stringent starvation protein B; KEGG: vvy:VV0600 stringent starvation protein B; stringent starvation protein B complement(4461144..4461569) Pseudoalteromonas atlantica T6c 4175477 YP_663254.1 CDS sspA NC_008228.1 4461584 4462216 R transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A complement(4461584..4462216) Pseudoalteromonas atlantica T6c 4175478 YP_663255.1 CDS Patl_3699 NC_008228.1 4462410 4463144 R PFAM: cytochrome c1; KEGG: ilo:IL0418 cytochrome c1; cytochrome c1 complement(4462410..4463144) Pseudoalteromonas atlantica T6c 4175479 YP_663256.1 CDS Patl_3700 NC_008228.1 4463141 4464409 R PFAM: cytochrome b/b6-like; KEGG: pha:PSHAa2529 ubiquinol-cytochrome c reductase, cytochrome b; cytochrome b/b6-like protein complement(4463141..4464409) Pseudoalteromonas atlantica T6c 4175480 YP_663257.1 CDS Patl_3701 NC_008228.1 4464411 4465043 R KEGG: ilo:IL0416 ubiquinol-cytochrome C reductase iron-sulfur subunit; TIGRFAM: Twin-arginine translocation pathway signal ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] region; ubiquinol-cytochrome c reductase, iron-sulfur subunit complement(4464411..4465043) Pseudoalteromonas atlantica T6c 4175481 YP_663258.1 CDS Patl_3702 NC_008228.1 4465301 4465693 R PFAM: ribosomal protein S9; KEGG: son:SO3939 ribosomal protein S9; 30S ribosomal protein S9 complement(4465301..4465693) Pseudoalteromonas atlantica T6c 4175482 YP_663259.1 CDS rplM NC_008228.1 4465706 4466134 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(4465706..4466134) Pseudoalteromonas atlantica T6c 4175483 YP_663260.1 CDS Patl_3704 NC_008228.1 4466453 4467040 R PFAM: CBS domain containing protein; KEGG: cps:CPS_1349 CBS domain protein; signal transduction protein complement(4466453..4467040) Pseudoalteromonas atlantica T6c 4175484 YP_663261.1 CDS Patl_3705 NC_008228.1 4467148 4467450 R hypothetical protein complement(4467148..4467450) Pseudoalteromonas atlantica T6c 4175485 YP_663262.1 CDS Patl_3706 NC_008228.1 4467624 4468478 R TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: hch:HCH_01808 predicted pyrophosphatase; MazG family protein complement(4467624..4468478) Pseudoalteromonas atlantica T6c 4175486 YP_663263.1 CDS Patl_3707 NC_008228.1 4468478 4470640 R KEGG: son:SO3455 GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT TGS RelA/SpoT; (p)ppGpp synthetase SpoT/RelA complement(4468478..4470640) Pseudoalteromonas atlantica T6c 4175487 YP_663264.1 CDS acpS NC_008228.1 4470916 4471296 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(4470916..4471296) Pseudoalteromonas atlantica T6c 4175488 YP_663265.1 CDS Patl_3709 NC_008228.1 4471311 4472048 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(4471311..4472048) Pseudoalteromonas atlantica T6c 4175489 YP_663266.1 CDS Patl_3710 NC_008228.1 4472045 4472767 R TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: vch:VC2459 DNA repair protein RecO; DNA repair protein RecO complement(4472045..4472767) Pseudoalteromonas atlantica T6c 4175490 YP_663267.1 CDS Patl_3711 NC_008228.1 4472815 4473099 R KEGG: vfi:VF0709 hypothetical protein; hypothetical protein complement(4472815..4473099) Pseudoalteromonas atlantica T6c 4175491 YP_663268.1 CDS Patl_3712 NC_008228.1 4473196 4474914 R TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ-like phosphoesterase, DHHA1; KEGG: ssn:SSO_3045 ssDNA exonuclease; single-stranded-DNA-specific exonuclease RecJ complement(4473196..4474914) Pseudoalteromonas atlantica T6c 4175492 YP_663269.1 CDS Patl_3713 NC_008228.1 4474995 4475780 R KEGG: son:SO0951 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC complement(4474995..4475780) Pseudoalteromonas atlantica T6c 4175493 YP_663270.1 CDS Patl_3714 NC_008228.1 4475869 4476774 R TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase phage integrase-like SAM-like; KEGG: pha:PSHAa0514 site-specific tyrosine recombinase XerD; tyrosine recombinase XerD complement(4475869..4476774) Pseudoalteromonas atlantica T6c 4175494 YP_663271.1 CDS Patl_3715 NC_008228.1 4476764 4477075 R KEGG: ilo:IL0757 uncharacterized conserved protein containing predicted Zn-ribbon like domain; Zn-ribbon like domain-containing protein complement(4476764..4477075) Pseudoalteromonas atlantica T6c 4175495 YP_663272.1 CDS Patl_3716 NC_008228.1 4477159 4478271 R KEGG: pha:PSHAa2602 twitching motility protein PilU (type IV pili); TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: ATPase; twitching motility protein complement(4477159..4478271) Pseudoalteromonas atlantica T6c 4175496 YP_663273.1 CDS Patl_3717 NC_008228.1 4478304 4479347 R TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: cps:CPS_3662 twitching motility protein PilT; twitching motility protein complement(4478304..4479347) Pseudoalteromonas atlantica T6c 4175497 YP_663274.1 CDS Patl_3718 NC_008228.1 4479376 4480059 D TIGRFAM: Protein of unknown function UPF0001; PFAM: alanine racemase-like; KEGG: son:SO3352 conserved hypothetical protein TIGR00044; hypothetical protein 4479376..4480059 Pseudoalteromonas atlantica T6c 4175498 YP_663275.1 CDS Patl_3719 NC_008228.1 4480196 4481017 D KEGG: ppr:PBPRA3144 putative pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent NAD-dependent glycerol-3-phosphate dehydrogenase-like; pyrroline-5-carboxylate reductase 4480196..4481017 Pseudoalteromonas atlantica T6c 4175499 YP_663276.1 CDS Patl_3720 NC_008228.1 4481043 4481585 D PFAM: protein of unknown function YGGT; KEGG: son:SO3355 hypothetical protein; hypothetical protein 4481043..4481585 Pseudoalteromonas atlantica T6c 4175500 YP_663277.1 CDS Patl_3721 NC_008228.1 4481611 4482015 D KEGG: cps:CPS_3666 hypothetical protein; hypothetical protein 4481611..4482015 Pseudoalteromonas atlantica T6c 4175501 YP_663278.1 CDS Patl_3722 NC_008228.1 4482102 4483409 D KEGG: rba:RB2547 signal peptide prediction; signal peptide prediction 4482102..4483409 Pseudoalteromonas atlantica T6c 4175502 YP_663279.1 CDS Patl_3723 NC_008228.1 4483430 4486141 D PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: vvy:VVA1472 sensory box sensor histidine kinase/response regulator; periplasmic sensor hybrid histidine kinase 4483430..4486141 Pseudoalteromonas atlantica T6c 4175503 YP_663280.1 CDS Patl_3724 NC_008228.1 4486204 4487376 R PFAM: helix-turn-helix, AraC type; KEGG: eca:ECA0101 xylose operon regulatory protein; AraC family transcriptional regulator complement(4486204..4487376) Pseudoalteromonas atlantica T6c 4175504 YP_663281.1 CDS Patl_3725 NC_008228.1 4487559 4489037 D TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: yps:YPTB3892 xylulose kinase; xylulokinase 4487559..4489037 Pseudoalteromonas atlantica T6c 4175505 YP_663282.1 CDS Patl_3726 NC_008228.1 4489191 4490510 D catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 4489191..4490510 Pseudoalteromonas atlantica T6c 4175506 YP_663283.1 CDS Patl_3727 NC_008228.1 4491062 4492462 R TIGRFAM: sugar transporter; PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: xac:XAC1777 MFS transporter; sugar transporter complement(4491062..4492462) Pseudoalteromonas atlantica T6c 4175507 YP_663284.1 CDS Patl_3728 NC_008228.1 4492590 4493741 R PFAM: glycoside hydrolase, family 43; KEGG: xcb:XC_4214 xylosidase/arabinosidase; alpha-L-arabinofuranosidase complement(4492590..4493741) Pseudoalteromonas atlantica T6c 4175508 YP_663285.1 CDS Patl_3729 NC_008228.1 4493876 4494604 R PFAM: NUDIX hydrolase; KEGG: bth:BT0354 hypothetical protein; NUDIX hydrolase complement(4493876..4494604) Pseudoalteromonas atlantica T6c 4175509 YP_663286.1 CDS Patl_3730 NC_008228.1 4494867 4497284 D PFAM: glycoside hydrolase, family 3-like; KEGG: ccr:CC3054 xylosidase/arabinosidase; glycoside hydrolase 4494867..4497284 Pseudoalteromonas atlantica T6c 4175510 YP_663287.1 CDS Patl_3731 NC_008228.1 4497460 4498191 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rru:Rru_A0201 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase complement(4497460..4498191) Pseudoalteromonas atlantica T6c 4175511 YP_663288.1 CDS Patl_3732 NC_008228.1 4498197 4500359 R PFAM: phospholipase D/Transphosphatidylase; KEGG: noc:Noc_1912 phospholipase D/transphosphatidylase; phospholipase D complement(4498197..4500359) Pseudoalteromonas atlantica T6c 4175512 YP_663289.1 CDS Patl_3733 NC_008228.1 4500742 4500948 D PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: cps:CPS_0718 cold-shock DNA-binding domain family protein; cold-shock DNA-binding domain-containing protein 4500742..4500948 Pseudoalteromonas atlantica T6c 4175513 YP_663290.1 CDS Patl_3734 NC_008228.1 4501061 4501555 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: hch:HCH_01604 peroxiredoxin; redoxin complement(4501061..4501555) Pseudoalteromonas atlantica T6c 4175514 YP_663291.1 CDS Patl_3735 NC_008228.1 4501891 4502406 R PFAM: dihydrofolate reductase region; KEGG: cps:CPS_4505 dihydrofolate reductase; dihydrofolate reductase complement(4501891..4502406) Pseudoalteromonas atlantica T6c 4175515 YP_663292.1 CDS obgE NC_008228.1 4502525 4503718 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(4502525..4503718) Pseudoalteromonas atlantica T6c 4175516 YP_663293.1 CDS rpmA NC_008228.1 4503892 4504149 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(4503892..4504149) Pseudoalteromonas atlantica T6c 4175517 YP_663294.1 CDS rplU NC_008228.1 4504165 4504476 R PFAM: ribosomal protein L21; KEGG: pmu:PM0347 50S ribosomal protein L21; 50S ribosomal protein L21 complement(4504165..4504476) Pseudoalteromonas atlantica T6c 4175518 YP_663295.1 CDS Patl_3739 NC_008228.1 4504716 4505687 D PFAM: Polyprenyl synthetase; KEGG: ilo:IL0474 geranylgeranyl pyrophosphate synthase; trans-hexaprenyltranstransferase 4504716..4505687 Pseudoalteromonas atlantica T6c 4175519 YP_663296.1 CDS Patl_3740 NC_008228.1 4505749 4506714 R KEGG: pha:PSHAa2436 hypothetical protein; hypothetical protein complement(4505749..4506714) Pseudoalteromonas atlantica T6c 4175520 YP_663297.1 CDS Patl_3741 NC_008228.1 4506736 4507269 R KEGG: pha:PSHAa2437 hypothetical protein; hypothetical protein complement(4506736..4507269) Pseudoalteromonas atlantica T6c 4175521 YP_663298.1 CDS Patl_3742 NC_008228.1 4507262 4507828 R PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: cps:CPS_4364 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(4507262..4507828) Pseudoalteromonas atlantica T6c 4175522 YP_663299.1 CDS Patl_3743 NC_008228.1 4507858 4508589 D PFAM: MOSC domain containing protein; KEGG: dar:Daro_0036 MOSC; MOSC domain-containing protein 4507858..4508589 Pseudoalteromonas atlantica T6c 4175523 YP_663300.1 CDS rplI NC_008228.1 4508663 4509115 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(4508663..4509115) Pseudoalteromonas atlantica T6c 4175524 YP_663301.1 CDS rpsR NC_008228.1 4509142 4509369 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(4509142..4509369) Pseudoalteromonas atlantica T6c 4175525 YP_663302.1 CDS rpsF NC_008228.1 4509381 4509788 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(4509381..4509788) Pseudoalteromonas atlantica T6c 4175526 YP_663303.1 CDS Patl_3747 NC_008228.1 4510002 4512347 R sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor protein ArcB complement(4510002..4512347) Pseudoalteromonas atlantica T6c 4175527 YP_663304.1 CDS gltB NC_008228.1 4512978 4517444 D catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 4512978..4517444 Pseudoalteromonas atlantica T6c 4175528 YP_663305.1 CDS gltD NC_008228.1 4517464 4518879 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 4517464..4518879 Pseudoalteromonas atlantica T6c 4175529 YP_663306.1 CDS Patl_3750 NC_008228.1 4519114 4520280 D PFAM: iron-containing alcohol dehydrogenase; KEGG: cps:CPS_1431 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 4519114..4520280 Pseudoalteromonas atlantica T6c 4175530 YP_663307.1 CDS Patl_3751 NC_008228.1 4520449 4521117 R PFAM: DSBA oxidoreductase; KEGG: psp:PSPPH_3908 2-hydroxychromene-2-carboxylate isomerase family protein; DSBA oxidoreductase complement(4520449..4521117) Pseudoalteromonas atlantica T6c 4175531 YP_663308.1 CDS groES NC_008228.1 4521533 4521823 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 4521533..4521823 Pseudoalteromonas atlantica T6c 4175532 YP_663309.1 CDS groEL NC_008228.1 4521858 4523504 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 4521858..4523504 Pseudoalteromonas atlantica T6c 4175533 YP_663310.1 CDS Patl_3755 NC_008228.1 4524185 4525468 D KEGG: lpp:lpp2401 hypothetical protein; hypothetical protein 4524185..4525468 Pseudoalteromonas atlantica T6c 4175535 YP_663311.1 CDS Patl_3756 NC_008228.1 4525491 4526447 R PFAM: transposase, IS111A/IS1328/IS1533 transposase IS116/IS110/IS902; KEGG: cps:CPS_2742 ISCps7, transposase; transposase IS116/IS110/IS902 complement(4525491..4526447) Pseudoalteromonas atlantica T6c 4175536 YP_663312.1 CDS Patl_3757 NC_008228.1 4527152 4527340 D KEGG: pha:PSHAa1585 hypothetical protein; hypothetical protein 4527152..4527340 Pseudoalteromonas atlantica T6c 4175537 YP_663313.1 CDS Patl_3759 NC_008228.1 4528253 4529266 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: ret:RHE_PF00156 putative zinc-dependent alcohol dehydrogenase protein; zinc-binding alcohol dehydrogenase 4528253..4529266 Pseudoalteromonas atlantica T6c 4175539 YP_663314.1 CDS Patl_3760 NC_008228.1 4529366 4530841 D PFAM: aldehyde dehydrogenase; KEGG: eba:ebA3161 P-hydroxybenzaldehyde dehydrogenase; betaine aldehyde dehydrogenase 4529366..4530841 Pseudoalteromonas atlantica T6c 4175540 YP_663315.1 CDS Patl_3761 NC_008228.1 4530893 4531510 D PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 4530893..4531510 Pseudoalteromonas atlantica T6c 4175541 YP_663316.1 CDS Patl_3762 NC_008228.1 4531557 4532375 D PFAM: alpha-acetolactate decarboxylase; KEGG: mma:MM0639 alpha-acetolactate decarboxylase; acetolactate decarboxylase 4531557..4532375 Pseudoalteromonas atlantica T6c 4175542 YP_663317.1 CDS Patl_3763 NC_008228.1 4532443 4533573 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: nmu:Nmul_A1473 zinc-containing alcohol dehydrogenase superfamily; zinc-binding alcohol dehydrogenase 4532443..4533573 Pseudoalteromonas atlantica T6c 4175543 YP_663318.1 CDS Patl_3764 NC_008228.1 4533999 4534184 D PFAM: plasmid maintenance system killer; KEGG: ilo:IL2055 RelE/ParE family protein, cytotoxic translational repressor of toxin-antitoxin stability system; plasmid maintenance system killer protein 4533999..4534184 Pseudoalteromonas atlantica T6c 4175544 YP_663319.1 CDS Patl_3765 NC_008228.1 4534184 4534477 D TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix motif; KEGG: noc:Noc_0437 plasmid maintenance system antidote protein; XRE family plasmid maintenance system antidote protein 4534184..4534477 Pseudoalteromonas atlantica T6c 4175545 YP_663320.1 CDS Patl_3766 NC_008228.1 4535353 4536000 R hypothetical protein complement(4535353..4536000) Pseudoalteromonas atlantica T6c 4175546 YP_663321.1 CDS Patl_3767 NC_008228.1 4536005 4536514 R hypothetical protein complement(4536005..4536514) Pseudoalteromonas atlantica T6c 4175547 YP_663322.1 CDS Patl_3768 NC_008228.1 4536615 4537367 R hypothetical protein complement(4536615..4537367) Pseudoalteromonas atlantica T6c 4175548 YP_663323.1 CDS Patl_3769 NC_008228.1 4537842 4540112 R PFAM: transcriptional regulatory protein-like; KEGG: ilo:IL1819 N-terminal winged-HTH domain fused to TolB-like domain; transcriptional regulator CadC complement(4537842..4540112) Pseudoalteromonas atlantica T6c 4175549 YP_663324.1 CDS Patl_3770 NC_008228.1 4540393 4541679 D PFAM: beta-lactamase; KEGG: bat:BAS2564 hypothetical protein; beta-lactamase 4540393..4541679 Pseudoalteromonas atlantica T6c 4175550 YP_663325.1 CDS Patl_3771 NC_008228.1 4541892 4542488 R PFAM: regulatory protein, TetR; KEGG: nfa:nfa35010 putative transcriptional regulator; TetR family transcriptional regulator complement(4541892..4542488) Pseudoalteromonas atlantica T6c 4175551 YP_663326.1 CDS Patl_3772 NC_008228.1 4542488 4543345 R PFAM: Phytanoyl-CoA dioxygenase; KEGG: nfa:nfa35020 hypothetical protein; phytanoyl-CoA dioxygenase complement(4542488..4543345) Pseudoalteromonas atlantica T6c 4175552 YP_663327.1 CDS Patl_3773 NC_008228.1 4543813 4544550 D PFAM: ABC transporter related; SMART: ATPase; KEGG: ccr:CC1518 ABC transporter, ATP-binding protein; ABC transporter-like protein 4543813..4544550 Pseudoalteromonas atlantica T6c 4175553 YP_663328.1 CDS Patl_3774 NC_008228.1 4544568 4546010 D KEGG: ccr:CC1519 hypothetical protein; hypothetical protein 4544568..4546010 Pseudoalteromonas atlantica T6c 4175554 YP_663329.1 CDS Patl_3775 NC_008228.1 4546007 4547317 D KEGG: ccr:CC1520 hypothetical protein; hypothetical protein 4546007..4547317 Pseudoalteromonas atlantica T6c 4175555 YP_663330.1 CDS Patl_3776 NC_008228.1 4547345 4549468 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa1584 TonB-dependent receptor for ferrichrome transport; TonB-dependent siderophore receptor 4547345..4549468 Pseudoalteromonas atlantica T6c 4175556 YP_663331.1 CDS Patl_3777 NC_008228.1 4549620 4550882 R PFAM: peptidase M24; KEGG: pha:PSHAb0215 putative metal-dependent dipeptidase; peptidase M24 complement(4549620..4550882) Pseudoalteromonas atlantica T6c 4175557 YP_663332.1 CDS Patl_3778 NC_008228.1 4551126 4552115 R PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: pha:PSHAa1381 transcriptional regulator; AraC family transcriptional regulator complement(4551126..4552115) Pseudoalteromonas atlantica T6c 4175558 YP_663333.1 CDS Patl_3779 NC_008228.1 4552259 4554175 D PFAM: beta-ketoacyl synthase; KEGG: pae:PA5174 probable beta-ketoacyl synthase; beta-ketoacyl synthase 4552259..4554175 Pseudoalteromonas atlantica T6c 4175559 YP_663334.1 CDS Patl_3780 NC_008228.1 4554397 4555062 D PFAM: lipolytic enzyme, G-D-S-L; KEGG: rba:RB973 mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase); G-D-S-L lipolytic protein 4554397..4555062 Pseudoalteromonas atlantica T6c 4175560 YP_663335.1 CDS Patl_3781 NC_008228.1 4555764 4556369 D KEGG: rba:RB3005 hypothetical protein; hypothetical protein 4555764..4556369 Pseudoalteromonas atlantica T6c 4175561 YP_663336.1 CDS Patl_3782 NC_008228.1 4556525 4556797 R hypothetical protein complement(4556525..4556797) Pseudoalteromonas atlantica T6c 4175562 YP_663337.1 CDS Patl_3783 NC_008228.1 4556839 4558086 R PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: rpb:RPB_1146 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase-like protein complement(4556839..4558086) Pseudoalteromonas atlantica T6c 4175563 YP_663338.1 CDS Patl_3784 NC_008228.1 4558711 4558920 D PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pha:PSHAa2980 cold shock-like protein CspE, RNA chaperone, transcription antiterminator, affects expression of RpoS and UspA; cold-shock DNA-binding domain-containing protein 4558711..4558920 Pseudoalteromonas atlantica T6c 4175564 YP_663339.1 CDS Patl_3785 NC_008228.1 4559193 4561439 D KEGG: pha:PSHAa2981 cold-shock RNAse R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases ribonuclease R; PFAM: ribonuclease II Ribonuclease B, OB region-like; SMART: Cold shock protein; ribonuclease R 4559193..4561439 Pseudoalteromonas atlantica T6c 4175565 YP_663340.1 CDS Patl_3786 NC_008228.1 4561557 4562192 R KEGG: bbr:BB3073 putative integral membrane protein; hypothetical protein complement(4561557..4562192) Pseudoalteromonas atlantica T6c 4175566 YP_663341.1 CDS Patl_3787 NC_008228.1 4562262 4562735 R hypothetical protein complement(4562262..4562735) Pseudoalteromonas atlantica T6c 4175567 YP_663342.1 CDS Patl_3788 NC_008228.1 4562781 4563035 R PFAM: protein of unknown function DUF465; KEGG: cps:CPS_0008 hypothetical protein; hypothetical protein complement(4562781..4563035) Pseudoalteromonas atlantica T6c 4175568 YP_663343.1 CDS Patl_3789 NC_008228.1 4563405 4563908 D KEGG: cps:CPS_0942 putative lipoprotein; putative lipoprotein 4563405..4563908 Pseudoalteromonas atlantica T6c 4175569 YP_663344.1 CDS Patl_3790 NC_008228.1 4564027 4564464 D KEGG: vch:VCA0893 hypothetical protein; hypothetical protein 4564027..4564464 Pseudoalteromonas atlantica T6c 4175570 YP_663345.1 CDS Patl_3791 NC_008228.1 4564671 4566182 D PFAM: acetyl-CoA hydrolase/transferase; KEGG: dar:Daro_2807 acetyl-CoA hydrolase/transferase; Acetyl-CoA hydrolase 4564671..4566182 Pseudoalteromonas atlantica T6c 4175571 YP_663346.1 CDS Patl_3792 NC_008228.1 4566275 4566601 D KEGG: ppr:PBPRA1285 hypothetical protein; hypothetical protein 4566275..4566601 Pseudoalteromonas atlantica T6c 4175572 YP_663347.1 CDS dgt NC_008228.1 4566705 4568153 R forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase complement(4566705..4568153) Pseudoalteromonas atlantica T6c 4175573 YP_663348.1 CDS Patl_3794 NC_008228.1 4568310 4569122 R hypothetical protein complement(4568310..4569122) Pseudoalteromonas atlantica T6c 4175574 YP_663349.1 CDS Patl_3795 NC_008228.1 4569680 4572322 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: nar:Saro_2541 TonB-dependent receptor; TonB-dependent receptor 4569680..4572322 Pseudoalteromonas atlantica T6c 4175575 YP_663350.1 CDS Patl_3796 NC_008228.1 4572390 4575512 R PFAM: TPR repeat Sel1-like repeat Tetratricopeptide TPR_3 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: noc:Noc_0166 TPR repeat protein; hypothetical protein complement(4572390..4575512) Pseudoalteromonas atlantica T6c 4175576 YP_663351.1 CDS Patl_3797 NC_008228.1 4575912 4577534 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: vpa:VPA0609 hypothetical protein; diguanylate cyclase/phosphodiesterase complement(4575912..4577534) Pseudoalteromonas atlantica T6c 4175577 YP_663352.1 CDS Patl_3798 NC_008228.1 4577790 4579178 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: yps:YPTB0493 probable outer membrane multidrug efflux lipoprotein, OMF family; RND efflux system outer membrane lipoprotein complement(4577790..4579178) Pseudoalteromonas atlantica T6c 4175578 YP_663353.1 CDS Patl_3799 NC_008228.1 4579252 4582413 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: yps:YPTB0492 multidrug efflux protein, RND family; hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(4579252..4582413) Pseudoalteromonas atlantica T6c 4175579 YP_663354.1 CDS Patl_3800 NC_008228.1 4582417 4583631 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: gsu:GSU2697 multidrug resistance protein; RND family efflux transporter MFP subunit complement(4582417..4583631) Pseudoalteromonas atlantica T6c 4175580 YP_663355.1 CDS Patl_3801 NC_008228.1 4584113 4585702 R KEGG: pfl:PFL_0986 PepSY-associated membrane protein; PepSY-associated membrane protein complement(4584113..4585702) Pseudoalteromonas atlantica T6c 4175581 YP_663356.1 CDS Patl_3802 NC_008228.1 4585699 4585980 R hypothetical protein complement(4585699..4585980) Pseudoalteromonas atlantica T6c 4175582 YP_663357.1 CDS Patl_3803 NC_008228.1 4586003 4588426 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: son:SO1482 TonB-dependent receptor, putative; TonB-dependent receptor, plug complement(4586003..4588426) Pseudoalteromonas atlantica T6c 4175583 YP_663358.1 CDS Patl_3804 NC_008228.1 4588568 4589194 R KEGG: cps:CPS_2861 hypothetical protein; hypothetical protein complement(4588568..4589194) Pseudoalteromonas atlantica T6c 4175584 YP_663359.1 CDS Patl_3805 NC_008228.1 4589280 4591127 R KEGG: cps:CPS_2797 hypothetical protein; hypothetical protein complement(4589280..4591127) Pseudoalteromonas atlantica T6c 4175585 YP_663360.1 CDS Patl_3806 NC_008228.1 4591160 4591690 R hypothetical protein complement(4591160..4591690) Pseudoalteromonas atlantica T6c 4175586 YP_663361.1 CDS Patl_3807 NC_008228.1 4591867 4592907 R PFAM: phage integrase; KEGG: neu:NE0588 phage integrase:chain length determinant protein; phage integrase complement(4591867..4592907) Pseudoalteromonas atlantica T6c 4175587 YP_663362.1 CDS Patl_3808 NC_008228.1 4592926 4593903 R KEGG: neu:NE0588 phage integrase:chain length determinant protein; hypothetical protein complement(4592926..4593903) Pseudoalteromonas atlantica T6c 4175588 YP_663363.1 CDS Patl_3809 NC_008228.1 4594309 4595130 R PFAM: FAD dependent oxidoreductase; KEGG: sco:SCO6740 D-amino acid oxidase; FAD dependent oxidoreductase complement(4594309..4595130) Pseudoalteromonas atlantica T6c 4175589 YP_663364.1 CDS Patl_3810 NC_008228.1 4595584 4596564 R PFAM: alpha/beta hydrolase fold; KEGG: pae:PA3301 hypothetical protein; alpha/beta hydrolase fold protein complement(4595584..4596564) Pseudoalteromonas atlantica T6c 4175590 YP_663365.1 CDS Patl_3811 NC_008228.1 4596675 4598318 R PFAM: AMP-dependent synthetase and ligase; KEGG: cps:CPS_0675 AMP-binding protein; AMP-dependent synthetase and ligase complement(4596675..4598318) Pseudoalteromonas atlantica T6c 4175591 YP_663366.1 CDS Patl_3812 NC_008228.1 4598397 4599179 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: nar:Saro_1897 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(4598397..4599179) Pseudoalteromonas atlantica T6c 4175592 YP_663367.1 CDS Patl_3813 NC_008228.1 4599438 4600034 R KEGG: sil:SPOA0348 hypothetical protein; putative transcriptional regulator complement(4599438..4600034) Pseudoalteromonas atlantica T6c 4175593 YP_663368.1 CDS Patl_3814 NC_008228.1 4600037 4603918 R PFAM: Hydantoinase/oxoprolinase Hydantoinase B/oxoprolinase Hydantoinaseoxoprolinase-like; KEGG: ret:RHE_PE00300 probable N-methylhydantoinase (ATP-hydrolyzing)/5-oxoprolinase protein; 5-oxoprolinase complement(4600037..4603918) Pseudoalteromonas atlantica T6c 4175594 YP_663369.1 CDS Patl_3815 NC_008228.1 4604136 4605362 D PFAM: natural resistance-associated macrophage protein; KEGG: ilo:IL2296 Mn2+/Fe2+ transporter, NRAMP family; natural resistance-associated macrophage protein 4604136..4605362 Pseudoalteromonas atlantica T6c 4175595 YP_663370.1 CDS Patl_3816 NC_008228.1 4605450 4605896 R KEGG: tcx:Tcr_0556 hypothetical protein; hypothetical protein complement(4605450..4605896) Pseudoalteromonas atlantica T6c 4175596 YP_663371.1 CDS Patl_3817 NC_008228.1 4605949 4607442 R PFAM: tryptophan halogenase; KEGG: cps:CPS_0992 putative tryptophan halogenase; tryptophan halogenase complement(4605949..4607442) Pseudoalteromonas atlantica T6c 4175597 YP_663372.1 CDS Patl_3818 NC_008228.1 4607623 4610547 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0993 TonB-dependent receptor; TonB-dependent receptor complement(4607623..4610547) Pseudoalteromonas atlantica T6c 4175598 YP_663373.1 CDS Patl_3819 NC_008228.1 4610753 4612030 R PFAM: major facilitator superfamily MFS_1; KEGG: ccr:CC1133 transporter, putative; major facilitator superfamily transporter complement(4610753..4612030) Pseudoalteromonas atlantica T6c 4175599 YP_663374.1 CDS Patl_3820 NC_008228.1 4612317 4614254 D PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: noc:Noc_0218 alpha amylase, catalytic region; alpha amylase 4612317..4614254 Pseudoalteromonas atlantica T6c 4175600 YP_663375.1 CDS Patl_3821 NC_008228.1 4614280 4615254 R PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein, LacI; KEGG: hch:HCH_04796 transcriptional regulator; LacI family transcriptional regulator complement(4614280..4615254) Pseudoalteromonas atlantica T6c 4175601 YP_663376.1 CDS Patl_3822 NC_008228.1 4615767 4617098 D TIGRFAM: sugar transporter; PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: rba:RB10309 xylose transporter; sugar transporter 4615767..4617098 Pseudoalteromonas atlantica T6c 4175602 YP_663377.1 CDS Patl_3823 NC_008228.1 4617095 4618690 D KEGG: bsu:BG10320 levanase; PFAM: Glycosyl hydrolases family 32, N terminal Glycosyl hydrolase family 32-like; SMART: Glycoside hydrolase, family 32; levanase 4617095..4618690 Pseudoalteromonas atlantica T6c 4175603 YP_663378.1 CDS Patl_3824 NC_008228.1 4618884 4619558 D PFAM: glutathione S-transferase-like; KEGG: pfo:Pfl_5490 glutathione S-transferase-like; glutathione S-transferase-like protein 4618884..4619558 Pseudoalteromonas atlantica T6c 4175604 YP_663379.1 CDS Patl_3825 NC_008228.1 4619628 4619822 D KEGG: ilo:IL1293 Zn-ribbon protein; Zn-ribbon protein 4619628..4619822 Pseudoalteromonas atlantica T6c 4175605 YP_663380.1 CDS Patl_3826 NC_008228.1 4619849 4620205 D hypothetical protein 4619849..4620205 Pseudoalteromonas atlantica T6c 4175606 YP_663381.1 CDS Patl_3827 NC_008228.1 4620288 4621217 D KEGG: cps:CPS_4478 hypothetical protein; hypothetical protein 4620288..4621217 Pseudoalteromonas atlantica T6c 4175607 YP_663382.1 CDS Patl_3828 NC_008228.1 4621353 4622021 D hypothetical protein 4621353..4622021 Pseudoalteromonas atlantica T6c 4175608 YP_663383.1 CDS Patl_3829 NC_008228.1 4622099 4623496 R PFAM: PhoH-like protein; SMART: ATPase Nucleotide binding protein, PINc; KEGG: cps:CPS_4518 PhoH family protein; PhoH-like protein complement(4622099..4623496) Pseudoalteromonas atlantica T6c 4175609 YP_663384.1 CDS Patl_3830 NC_008228.1 4623847 4626678 D transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 4623847..4626678 Pseudoalteromonas atlantica T6c 4175610 YP_663385.1 CDS Patl_3831 NC_008228.1 4626693 4627349 D PFAM: pseudouridine synthase; KEGG: pha:PSHAa2627 pseudouridylate synthase for 23S rRNA (position 746) and tRNAphe(position 32), dual specificity; pseudouridylate synthase 4626693..4627349 Pseudoalteromonas atlantica T6c 4175611 YP_663386.1 CDS Patl_3832 NC_008228.1 4627419 4628399 D KEGG: pha:PSHAa2628 hypothetical protein; hypothetical protein 4627419..4628399 Pseudoalteromonas atlantica T6c 4175612 YP_663387.1 CDS Patl_3833 NC_008228.1 4628554 4628886 D KEGG: son:SO3813 hypothetical protein; hypothetical protein 4628554..4628886 Pseudoalteromonas atlantica T6c 4175613 YP_663388.1 CDS Patl_3834 NC_008228.1 4628897 4630150 R PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_0706 putative AmpG protein; major facilitator superfamily transporter complement(4628897..4630150) Pseudoalteromonas atlantica T6c 4175614 YP_663389.1 CDS Patl_3835 NC_008228.1 4630197 4631147 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: pha:PSHAa1211 sensory box/GGDEF protein; diguanylate cyclase complement(4630197..4631147) Pseudoalteromonas atlantica T6c 4175615 YP_663390.1 CDS Patl_3836 NC_008228.1 4631159 4632175 R PFAM: response regulator receiver; KEGG: ilo:IL0510 chemotaxis response regulator; response regulator receiver protein complement(4631159..4632175) Pseudoalteromonas atlantica T6c 4175616 YP_663391.1 CDS thyA NC_008228.1 4632419 4633270 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 4632419..4633270 Pseudoalteromonas atlantica T6c 4175617 YP_663392.1 CDS Patl_3838 NC_008228.1 4633398 4634276 D KEGG: vfi:VFA0707 transporter, drug/metabolite exporter family; drug/metabolite exporter family protein 4633398..4634276 Pseudoalteromonas atlantica T6c 4175618 YP_663393.1 CDS Patl_3839 NC_008228.1 4634346 4635638 R PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: cps:CPS_0698 long-chain fatty acid transport protein; aromatic hydrocarbon degradation membrane protein complement(4634346..4635638) Pseudoalteromonas atlantica T6c 4175619 YP_663394.1 CDS Patl_3840 NC_008228.1 4635914 4636576 R PFAM: Abortive infection protein; KEGG: ava:Ava_C0052 abortive infection protein; abortive infection protein complement(4635914..4636576) Pseudoalteromonas atlantica T6c 4175620 YP_663395.1 CDS Patl_3841 NC_008228.1 4636821 4637291 D PFAM: Ferritin and Dps; KEGG: tcx:Tcr_1226 ferritin and Dps; Ferritin and Dps 4636821..4637291 Pseudoalteromonas atlantica T6c 4175621 YP_663396.1 CDS Patl_3842 NC_008228.1 4637381 4638163 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pfo:Pfl_1187 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(4637381..4638163) Pseudoalteromonas atlantica T6c 4175622 YP_663397.1 CDS Patl_3843 NC_008228.1 4638324 4639166 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(4638324..4639166) Pseudoalteromonas atlantica T6c 4175623 YP_663398.1 CDS Patl_3844 NC_008228.1 4639176 4639976 R PFAM: protein of unknown function DUF81; KEGG: ppr:PBPRA0579 conserved hypothetical protein; hypothetical protein complement(4639176..4639976) Pseudoalteromonas atlantica T6c 4175624 YP_663399.1 CDS Patl_3845 NC_008228.1 4639991 4642279 R TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme GAF PEP-utilising enzyme, mobile region PEP-utilising enzyme-like; KEGG: cps:CPS_3624 phosphoenolpyruvate-protein phosphotransferase PtsP; phosphoenolpyruvate-protein phosphotransferase PtsP complement(4639991..4642279) Pseudoalteromonas atlantica T6c 4175625 YP_663400.1 CDS Patl_3846 NC_008228.1 4642289 4642813 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(4642289..4642813) Pseudoalteromonas atlantica T6c 4175626 YP_663401.1 CDS Patl_3847 NC_008228.1 4642873 4643523 D PFAM: YhhN-like; KEGG: lpp:lpp1972 hypothetical protein; YjeF-like protein 4642873..4643523 Pseudoalteromonas atlantica T6c 4175627 YP_663402.1 CDS Patl_3848 NC_008228.1 4643516 4644202 D MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 4643516..4644202 Pseudoalteromonas atlantica T6c 4175628 YP_663403.1 CDS Patl_3849 NC_008228.1 4644275 4645705 R PFAM: aldehyde dehydrogenase; KEGG: bte:BTH_II0498 aldehyde dehydrogenase; aldehyde dehydrogenase complement(4644275..4645705) Pseudoalteromonas atlantica T6c 4175629 YP_663404.1 CDS Patl_3850 NC_008228.1 4645716 4647356 R catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase complement(4645716..4647356) Pseudoalteromonas atlantica T6c 4175630 YP_663405.1 CDS Patl_3851 NC_008228.1 4647517 4649004 R PFAM: adenylate cyclase; KEGG: ppr:PBPRA0445 conserved hypothetical protein; adenylate cyclase complement(4647517..4649004) Pseudoalteromonas atlantica T6c 4175631 YP_663406.1 CDS Patl_3852 NC_008228.1 4649149 4649748 D PFAM: SH3, type 3; SMART: SH3-like region; KEGG: vvy:VV0573 SH3 domain protein; hypothetical protein 4649149..4649748 Pseudoalteromonas atlantica T6c 4175632 YP_663407.1 CDS Patl_3853 NC_008228.1 4649830 4650471 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dra:DR1999 hypothetical protein; lysine exporter protein LysE/YggA 4649830..4650471 Pseudoalteromonas atlantica T6c 4175633 YP_663408.1 CDS Patl_3854 NC_008228.1 4650512 4651015 D KEGG: cps:CPS_4101 hypothetical protein; hypothetical protein 4650512..4651015 Pseudoalteromonas atlantica T6c 4175634 YP_663409.1 CDS Patl_3855 NC_008228.1 4651017 4652780 D KEGG: ilo:IL2158 hypothetical protein; hypothetical protein 4651017..4652780 Pseudoalteromonas atlantica T6c 4175635 YP_663410.1 CDS Patl_3856 NC_008228.1 4652929 4653207 D PFAM: Septum formation initiator; KEGG: cps:CPS_1071 septum formation initiator family protein; septum formation initiator 4652929..4653207 Pseudoalteromonas atlantica T6c 4175636 YP_663411.1 CDS Patl_3857 NC_008228.1 4653214 4653909 D TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: stt:t2831 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 4653214..4653909 Pseudoalteromonas atlantica T6c 4175637 YP_663412.1 CDS ispF NC_008228.1 4653906 4654394 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 4653906..4654394 Pseudoalteromonas atlantica T6c 4175638 YP_663413.1 CDS Patl_3859 NC_008228.1 4654399 4655451 D PFAM: tRNA pseudouridine synthase D, TruD; KEGG: son:SO3436 tRNA pseudouridine synthase D; pseudouridylate synthase 4654399..4655451 Pseudoalteromonas atlantica T6c 4175639 YP_663414.1 CDS Patl_3860 NC_008228.1 4655448 4656194 D KEGG: pha:PSHAa0687 acid phosphatase SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; stationary-phase survival protein SurE 4655448..4656194 Pseudoalteromonas atlantica T6c 4175640 YP_663415.1 CDS Patl_3861 NC_008228.1 4656283 4656921 D KEGG: cps:CPS_1076 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 4656283..4656921 Pseudoalteromonas atlantica T6c 4175641 YP_663416.1 CDS Patl_3862 NC_008228.1 4657088 4657972 D PFAM: protein of unknown function DUF368; KEGG: hch:HCH_01875 predicted membrane protein; hypothetical protein 4657088..4657972 Pseudoalteromonas atlantica T6c 4175642 YP_663417.1 CDS Patl_3863 NC_008228.1 4658013 4658831 D PFAM: Peptidoglycan-binding LysM peptidase M23B; KEGG: cps:CPS_1078 putative lipoprotein NlpD; peptidase M23B 4658013..4658831 Pseudoalteromonas atlantica T6c 4175643 YP_663418.1 CDS Patl_3864 NC_008228.1 4658897 4659880 D TIGRFAM: RNA polymerase sigma factor RpoS; PFAM: sigma-70 region 3 sigma-70 region 2 sigma-70 region 4 sigma-70 region 1.2; KEGG: ppr:PBPRA3071 putative RNA polymerase sigma-38 factor; RNA polymerase subunit sigma 28 4658897..4659880 Pseudoalteromonas atlantica T6c 4175644 YP_663419.1 CDS Patl_3865 NC_008228.1 4659969 4660379 R PFAM: Late embryogenesis abundant protein; KEGG: cel:K08H10.1 Hypothetical protein K08H10.1; late embryogenesis abundant protein complement(4659969..4660379) Pseudoalteromonas atlantica T6c 4175645 YP_663420.1 CDS Patl_3866 NC_008228.1 4661058 4661654 D KEGG: nmu:Nmul_A0564 possible transmembrane protein; putative transmembrane protein 4661058..4661654 Pseudoalteromonas atlantica T6c 4175646 YP_663421.1 CDS Patl_3867 NC_008228.1 4661821 4662153 D PFAM: SEC-C motif; KEGG: vfi:VF1407 hypothetical protein; SecC motif-containing protein 4661821..4662153 Pseudoalteromonas atlantica T6c 4175647 YP_663422.1 CDS Patl_3868 NC_008228.1 4662204 4662956 R PFAM: PHP-like; SMART: Phosphoesterase PHP-like; KEGG: ppr:PBPRB2022 conserved hypothetical protein; putative hydrolase complement(4662204..4662956) Pseudoalteromonas atlantica T6c 4175648 YP_663423.1 CDS Patl_3869 NC_008228.1 4663366 4663803 D PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: psp:PSPPH_1477 cytosine deaminase; cytosine deaminase 4663366..4663803 Pseudoalteromonas atlantica T6c 4175649 YP_663424.1 CDS Patl_3870 NC_008228.1 4663917 4664381 D hypothetical protein 4663917..4664381 Pseudoalteromonas atlantica T6c 4175650 YP_663425.1 CDS Patl_3871 NC_008228.1 4664383 4664595 D PFAM: helix-turn-helix motif; KEGG: tko:TK1339 predicted transcription regulator, containing DNA-binding HTH domain; XRE family transcriptional regulator 4664383..4664595 Pseudoalteromonas atlantica T6c 4175651 YP_663426.1 CDS Patl_3872 NC_008228.1 4664747 4666309 R PFAM: GCN5-related N-acetyltransferase Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: hch:HCH_04040 predicted amidohydrolase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(4664747..4666309) Pseudoalteromonas atlantica T6c 4175652 YP_663427.1 CDS Patl_3873 NC_008228.1 4666842 4668770 D catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 4666842..4668770 Pseudoalteromonas atlantica T6c 4175653 YP_663428.1 CDS Patl_3874 NC_008228.1 4668845 4669924 R PFAM: beta-lactamase; KEGG: cps:CPS_1414 putative beta-lactamase; beta-lactamase complement(4668845..4669924) Pseudoalteromonas atlantica T6c 4175654 YP_663429.1 CDS Patl_3875 NC_008228.1 4670287 4671660 D PFAM: helix-turn-helix, AraC type Ada, metal-binding AlkA-like; KEGG: vpa:VPA0045 ada regulatory protein; AraC family transcriptional regulator 4670287..4671660 Pseudoalteromonas atlantica T6c 4175655 YP_663430.1 CDS Patl_3876 NC_008228.1 4671660 4672163 D KEGG: vvu:VV21209 methylated DNA-protein cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase 4671660..4672163 Pseudoalteromonas atlantica T6c 4175656 YP_663431.1 CDS Patl_3877 NC_008228.1 4672182 4673084 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: rso:RSc2507 probable transmembrane protein; hypothetical protein 4672182..4673084 Pseudoalteromonas atlantica T6c 4175657 YP_663432.1 CDS Patl_3878 NC_008228.1 4673172 4674596 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: son:SO4457 GGDEF domain protein; diguanylate cyclase complement(4673172..4674596) Pseudoalteromonas atlantica T6c 4175658 YP_663433.1 CDS Patl_3879 NC_008228.1 4674986 4676347 D TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat Nucleotidyl transferase; KEGG: pha:PSHAa3006 bifunctional: N-acetyl glucosamine-1-phosphate uridyltransferase (N-terminal); glucosamine-1-phosphate acetyl transferase (C-terminal); UDP-N-acetylglucosamine pyrophosphorylase 4674986..4676347 Pseudoalteromonas atlantica T6c 4175659 YP_663434.1 CDS Patl_3880 NC_008228.1 4676420 4677250 D PFAM: regulatory protein, DeoR Helix-turn-helix, type 11; KEGG: son:SO4742 transcriptional regulator, DeoR family; DeoR family transcriptional regulator 4676420..4677250 Pseudoalteromonas atlantica T6c 4175660 YP_663435.1 CDS Patl_3881 NC_008228.1 4677254 4679086 D TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase, class-II sugar isomerase (SIS); KEGG: ilo:IL2616 glucosamine-fructose-6-phosphate aminotransferase; glucosamine--fructose-6-phosphate aminotransferase 4677254..4679086 Pseudoalteromonas atlantica T6c 4175661 YP_663436.1 CDS Patl_3882 NC_008228.1 4679431 4680504 R PFAM: phosphate-selective porin O and P; KEGG: xcb:XC_1529 polyphosphate-selective porin O; phosphate-selective porin O and P complement(4679431..4680504) Pseudoalteromonas atlantica T6c 4175662 YP_663437.1 CDS Patl_3883 NC_008228.1 4680524 4681510 R PFAM: aldo/keto reductase; KEGG: mag:amb0256 predicted oxidoreductase; aldo/keto reductase complement(4680524..4681510) Pseudoalteromonas atlantica T6c 4175663 YP_663438.1 CDS Patl_3884 NC_008228.1 4681539 4682477 R PFAM: oxidoreductase-like; KEGG: rpa:RPA4703 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase; oxidoreductase-like protein complement(4681539..4682477) Pseudoalteromonas atlantica T6c 4175664 YP_663439.1 CDS Patl_3885 NC_008228.1 4682487 4683326 R extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit beta complement(4682487..4683326) Pseudoalteromonas atlantica T6c 4175665 YP_663440.1 CDS Patl_3886 NC_008228.1 4683326 4683712 R extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit alpha complement(4683326..4683712) Pseudoalteromonas atlantica T6c 4175666 YP_663441.1 CDS Patl_3887 NC_008228.1 4683722 4684630 R PFAM: amidohydrolase 2; KEGG: rpb:RPB_0874 amidohydrolase 2; amidohydrolase 2 complement(4683722..4684630) Pseudoalteromonas atlantica T6c 4175667 YP_663442.1 CDS Patl_3888 NC_008228.1 4684627 4685646 R PFAM: amidohydrolase 2; KEGG: xcb:XC_4121 4-oxalomesaconate hydratase; amidohydrolase 2 complement(4684627..4685646) Pseudoalteromonas atlantica T6c 4175668 YP_663443.1 CDS Patl_3889 NC_008228.1 4685714 4686811 R PFAM: protein of unknown function DUF453; KEGG: ppu:PP2513 hypothetical protein; hypothetical protein complement(4685714..4686811) Pseudoalteromonas atlantica T6c 4175669 YP_663444.1 CDS Patl_3890 NC_008228.1 4686814 4687500 R PFAM: Dimethylmenaquinone methyltransferase; KEGG: ppu:PP2514 hypothetical protein; hypothetical protein complement(4686814..4687500) Pseudoalteromonas atlantica T6c 4175670 YP_663445.1 CDS Patl_3891 NC_008228.1 4687629 4688831 D PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: xoo:XOO4566 transcriptional regulator; LysR family transcriptional regulator 4687629..4688831 Pseudoalteromonas atlantica T6c 4175671 YP_663446.1 CDS Patl_3892 NC_008228.1 4688845 4689726 R PFAM: helix-turn-helix, AraC type AraC protein, arabinose-binding/dimerisation; KEGG: bja:bll3668 transcriptional regulatory protein; AraC family transcriptional regulator complement(4688845..4689726) Pseudoalteromonas atlantica T6c 4175672 YP_663447.1 CDS Patl_3893 NC_008228.1 4689867 4691081 D catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase 4689867..4691081 Pseudoalteromonas atlantica T6c 4175673 YP_663448.1 CDS Patl_3894 NC_008228.1 4691875 4692963 R hypothetical protein complement(4691875..4692963) Pseudoalteromonas atlantica T6c 4175674 YP_663449.1 CDS Patl_3895 NC_008228.1 4693000 4694442 R PFAM: aldehyde dehydrogenase; KEGG: gme:Gmet_2131 aldehyde dehydrogenase; betaine aldehyde dehydrogenase complement(4693000..4694442) Pseudoalteromonas atlantica T6c 4175675 YP_663450.1 CDS Patl_3896 NC_008228.1 4694531 4694776 D hypothetical protein 4694531..4694776 Pseudoalteromonas atlantica T6c 4175676 YP_663451.1 CDS Patl_3897 NC_008228.1 4694882 4696126 D PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: bur:Bcep18194_C7575 transcriptional regulator, LysR family; LysR family transcriptional regulator 4694882..4696126 Pseudoalteromonas atlantica T6c 4175677 YP_663452.1 CDS Patl_3898 NC_008228.1 4696338 4698110 R PFAM: sigma-54 factor, interaction region helix-turn-helix, Fis-type 4-vinyl reductase, 4VR Activator of aromatic catabolism; SMART: ATPase; KEGG: reu:Reut_B5673 helix-turn-helix, fis-type; Fis family transcriptional regulator complement(4696338..4698110) Pseudoalteromonas atlantica T6c 4175678 YP_663453.1 CDS Patl_3899 NC_008228.1 4698619 4699737 D PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: ccr:CC2396 benzyl-alcohol dehydrogenase; zinc-binding alcohol dehydrogenase 4698619..4699737 Pseudoalteromonas atlantica T6c 4175679 YP_663454.1 CDS Patl_3900 NC_008228.1 4699844 4700320 D KEGG: stt:t1449 hypothetical protein; hypothetical protein 4699844..4700320 Pseudoalteromonas atlantica T6c 4175680 YP_663455.1 CDS Patl_3901 NC_008228.1 4700925 4703318 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: aci:ACIAD1534 putative TonB-dependent receptor protein (outer membrane salicin receptor); TonB-dependent receptor, plug 4700925..4703318 Pseudoalteromonas atlantica T6c 4175681 YP_663456.1 CDS Patl_3902 NC_008228.1 4703334 4704272 D PFAM: beta-lactamase-like; KEGG: ctc:CTC00902 putative hydrolase; beta-lactamase-like protein 4703334..4704272 Pseudoalteromonas atlantica T6c 4175682 YP_663457.1 CDS Patl_3903 NC_008228.1 4705190 4706650 R PFAM: sulfatase type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: cps:CPS_2368 putative N-acetylglucosamine-6-sulfatase; sulfatase complement(4705190..4706650) Pseudoalteromonas atlantica T6c 4175683 YP_663458.1 CDS Patl_3904 NC_008228.1 4706736 4709024 R PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2138 TonB-dependent receptor; TonB-dependent receptor complement(4706736..4709024) Pseudoalteromonas atlantica T6c 4175684 YP_663459.1 CDS Patl_3905 NC_008228.1 4709833 4710468 D PFAM: regulatory protein, TetR; KEGG: cps:CPS_4876 transcriptional regulator, TetR family; TetR family transcriptional regulator 4709833..4710468 Pseudoalteromonas atlantica T6c 4175685 YP_663460.1 CDS Patl_3906 NC_008228.1 4710919 4711848 D PFAM: beta-lactamase-like; KEGG: ctc:CTC00902 putative hydrolase; beta-lactamase-like protein 4710919..4711848 Pseudoalteromonas atlantica T6c 4175686 YP_663461.1 CDS Patl_3907 NC_008228.1 4712685 4714154 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: FAD linked oxidase-like; KEGG: yps:YPTB1469 putative oxidoreductase; twin-arginine translocation pathway signal protein 4712685..4714154 Pseudoalteromonas atlantica T6c 4175687 YP_663462.1 CDS Patl_3908 NC_008228.1 4714192 4714515 D PFAM: cytochrome c, class I; KEGG: hch:HCH_04415 cytochrome c553; cytochrome c, class I 4714192..4714515 Pseudoalteromonas atlantica T6c 4175688 YP_663463.1 CDS Patl_3909 NC_008228.1 4714577 4715029 D hypothetical protein 4714577..4715029 Pseudoalteromonas atlantica T6c 4175689 YP_663464.1 CDS Patl_3910 NC_008228.1 4715548 4716150 R KEGG: cps:CPS_1881 hypothetical protein; hypothetical protein complement(4715548..4716150) Pseudoalteromonas atlantica T6c 4175690 YP_663465.1 CDS Patl_3911 NC_008228.1 4716400 4717119 R PFAM: PaaX-like-like; KEGG: bpm:BURPS1710b_0283 putative phenylacetic acid degradation operon negative regulatory protein; PaaX-like protein complement(4716400..4717119) Pseudoalteromonas atlantica T6c 4175691 YP_663466.1 CDS Patl_3912 NC_008228.1 4717545 4719191 D PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: pae:PA3972 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase-like protein 4717545..4719191 Pseudoalteromonas atlantica T6c 4175692 YP_663467.1 CDS Patl_3913 NC_008228.1 4719461 4720165 D KEGG: son:SO2794 hypothetical protein; hypothetical protein 4719461..4720165 Pseudoalteromonas atlantica T6c 4175693 YP_663468.1 CDS Patl_3914 NC_008228.1 4720203 4722959 R TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: noc:Noc_0226 PAS sensor diguanylate cyclase and phophodiesterase; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(4720203..4722959) Pseudoalteromonas atlantica T6c 4175694 YP_663469.1 CDS Patl_3915 NC_008228.1 4723477 4725996 D PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: vch:VC1349 sensory box sensor histidine kinase/response regulator; periplasmic sensor hybrid histidine kinase 4723477..4725996 Pseudoalteromonas atlantica T6c 4175695 YP_663470.1 CDS Patl_3916 NC_008228.1 4726066 4726959 R PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pha:PSHAa1468 transcriptional activator protein, LysR; LysR family transcriptional regulator complement(4726066..4726959) Pseudoalteromonas atlantica T6c 4175696 YP_663471.1 CDS Patl_3917 NC_008228.1 4727087 4727905 R PFAM: beta-lactamase-like; KEGG: vpa:VPA0171 hypothetical protein; beta-lactamase-like protein complement(4727087..4727905) Pseudoalteromonas atlantica T6c 4175697 YP_663472.1 CDS Patl_3918 NC_008228.1 4728101 4728697 D pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase 4728101..4728697 Pseudoalteromonas atlantica T6c 4175698 YP_663473.1 CDS Patl_3919 NC_008228.1 4728746 4730998 R PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: pha:PSHAa0627 sensor histidine kinase; sensor signal transduction histidine kinase complement(4728746..4730998) Pseudoalteromonas atlantica T6c 4175699 YP_663474.1 CDS Patl_3920 NC_008228.1 4731004 4731717 R PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: cps:CPS_3982 DNA-binding response regulator; two component transcriptional regulator complement(4731004..4731717) Pseudoalteromonas atlantica T6c 4175700 YP_663475.1 CDS Patl_3921 NC_008228.1 4731949 4732773 D PFAM: OmpA/MotB; KEGG: ppr:PBPRB0759 hypothetical OmpA family protein; OmpA/MotB protein 4731949..4732773 Pseudoalteromonas atlantica T6c 4175701 YP_663476.1 CDS Patl_3922 NC_008228.1 4733082 4735187 D PFAM: von Willebrand factor, type A Vault protein inter-alpha-trypsin; SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: ret:RHE_CH03000 hypothetical protein; vault protein inter-alpha-trypsin 4733082..4735187 Pseudoalteromonas atlantica T6c 4175702 YP_663477.1 CDS Patl_3923 NC_008228.1 4735184 4735900 D TIGRFAM: sortase family protein; PFAM: peptidase C60, sortase A and B; KEGG: son:SO2196 LPXTG-site transpeptidase family protein; sortase family protein 4735184..4735900 Pseudoalteromonas atlantica T6c 4175703 YP_663478.1 CDS Patl_3924 NC_008228.1 4736112 4736573 D hypothetical protein 4736112..4736573 Pseudoalteromonas atlantica T6c 4175704 YP_663479.1 CDS Patl_3925 NC_008228.1 4736705 4738138 D PFAM: putative esterase; KEGG: ilo:IL2088 predicted hydrolase of the alpha/beta superfamily; putative esterase 4736705..4738138 Pseudoalteromonas atlantica T6c 4175705 YP_663480.1 CDS Patl_3926 NC_008228.1 4738169 4738759 R PFAM: Carboxymuconolactone decarboxylase; KEGG: rba:RB8432 probable fusion protein; carboxymuconolactone decarboxylase complement(4738169..4738759) Pseudoalteromonas atlantica T6c 4175706 YP_663481.1 CDS Patl_3927 NC_008228.1 4739036 4739995 D PFAM: ABC transporter related; SMART: ATPase; KEGG: son:SO3802 ABC transporter, ATP-binding protein; ABC transporter-like protein 4739036..4739995 Pseudoalteromonas atlantica T6c 4175707 YP_663482.1 CDS Patl_3928 NC_008228.1 4739988 4740758 D PFAM: ABC-2 type transporter; KEGG: pha:PSHAa2296 ABC-type transport system, permease component; ABC transporter 4739988..4740758 Pseudoalteromonas atlantica T6c 4175708 YP_663483.1 CDS Patl_3929 NC_008228.1 4740773 4741450 D PFAM: putative methyltransferase; KEGG: pha:PSHAa2295 methyltransferase SAM dependent; putative methyltransferase 4740773..4741450 Pseudoalteromonas atlantica T6c 4175709 YP_663484.1 CDS Patl_3930 NC_008228.1 4741496 4742221 R PFAM: EAL; KEGG: pha:PSHAa2294 hypothetical protein; diguanylate phosphodiesterase complement(4741496..4742221) Pseudoalteromonas atlantica T6c 4175710 YP_663485.1 CDS Patl_3931 NC_008228.1 4742442 4744052 D PFAM: Pyridoxal-dependent decarboxylase; KEGG: cps:CPS_1007 putative decarboxylase; pyridoxal-dependent decarboxylase 4742442..4744052 Pseudoalteromonas atlantica T6c 4175711 YP_663486.1 CDS Patl_3932 NC_008228.1 4744134 4744985 R KEGG: son:SO0869 pantoate--beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase cytidyltransferase-related domain; PFAM: Pantoate-beta-alanine ligase; pantoate--beta-alanine ligase complement(4744134..4744985) Pseudoalteromonas atlantica T6c 4175712 YP_663487.1 CDS panB NC_008228.1 4744993 4745790 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(4744993..4745790) Pseudoalteromonas atlantica T6c 4175713 YP_663488.1 CDS Patl_3934 NC_008228.1 4745877 4746365 R KEGG: vvy:VV2762 7;8-dihydro-6-hydroxymethylpterin- pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(4745877..4746365) Pseudoalteromonas atlantica T6c 4175714 YP_663489.1 CDS Patl_3935 NC_008228.1 4746362 4747609 R TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: eca:ECA3319 poly(A) polymerase; poly(A) polymerase complement(4746362..4747609) Pseudoalteromonas atlantica T6c 4175715 YP_663490.1 CDS Patl_3936 NC_008228.1 4747817 4748734 R PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: vvy:VV2760 glutamyl-tRNA synthetase; glutamate--tRNA ligase complement(4747817..4748734) Pseudoalteromonas atlantica T6c 4175716 YP_663491.1 CDS Patl_3937 NC_008228.1 4748799 4749248 R TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: ilo:IL2250 DnaK; TraR/DksA family transcriptional regulator complement(4748799..4749248) Pseudoalteromonas atlantica T6c 4175717 YP_663492.1 CDS Patl_3938 NC_008228.1 4749415 4750119 R PFAM: sugar fermentation stimulation protein; KEGG: sgl:SG0493 sugar fermentation stimulation protein; sugar fermentation stimulation protein complement(4749415..4750119) Pseudoalteromonas atlantica T6c 4175718 YP_663493.1 CDS Patl_3939 NC_008228.1 4750187 4751470 D catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B 4750187..4751470 Pseudoalteromonas atlantica T6c 4175719 YP_663494.1 CDS Patl_3940 NC_008228.1 4751570 4751752 R hypothetical protein complement(4751570..4751752) Pseudoalteromonas atlantica T6c 4175720 YP_663495.1 CDS Patl_3941 NC_008228.1 4751982 4752572 D PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: son:SO0129 conserved hypothetical protein TIGR00427; multiple antibiotic resistance (MarC)-like protein 4751982..4752572 Pseudoalteromonas atlantica T6c 4175721 YP_663496.1 CDS Patl_3942 NC_008228.1 4752595 4753185 D PFAM: protein of unknown function DUF416; KEGG: cps:CPS_0153 hypothetical protein; hypothetical protein 4752595..4753185 Pseudoalteromonas atlantica T6c 4175722 YP_663497.1 CDS Patl_3943 NC_008228.1 4753232 4753816 R TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: pha:PSHAa0353 enzyme with N-6 adenine-specific DNA methylase domain; putative methyltransferase complement(4753232..4753816) Pseudoalteromonas atlantica T6c 4175723 YP_663498.1 CDS Patl_3944 NC_008228.1 4753901 4755358 D KEGG: sbo:SBO_3461 cell division membrane protein; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G-domain; SMART: ATPase; signal recognition particle-docking protein FtsY 4753901..4755358 Pseudoalteromonas atlantica T6c 4175724 YP_663499.1 CDS Patl_3945 NC_008228.1 4755430 4756104 D KEGG: ilo:IL0227 FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: ATPase; cell division ATP-binding protein FtsE 4755430..4756104 Pseudoalteromonas atlantica T6c 4175725 YP_663500.1 CDS Patl_3946 NC_008228.1 4756175 4757155 D PFAM: protein of unknown function DUF214; KEGG: pha:PSHAa0356 cell division protein; hypothetical protein 4756175..4757155 Pseudoalteromonas atlantica T6c 4175726 YP_663501.1 CDS Patl_3947 NC_008228.1 4757226 4758467 R PFAM: EAL; KEGG: cps:CPS_3464 EAL domain protein; diguanylate phosphodiesterase complement(4757226..4758467) Pseudoalteromonas atlantica T6c 4175727 YP_663502.1 CDS Patl_3948 NC_008228.1 4758981 4759850 D TIGRFAM: RNA polymerase sigma factor RpoH; PFAM: sigma-70 region 2 sigma-70 region 4; KEGG: cps:CPS_0161 RNA polymerase sigma-32 factor; RNA polymerase sigma-32 subunit RpoH 4758981..4759850 Pseudoalteromonas atlantica T6c 4175728 YP_663503.1 CDS Patl_3949 NC_008228.1 4759935 4760861 R TIGRFAM: thioesterase domain, putative; PFAM: GCN5-related N-acetyltransferase; KEGG: ilo:IL2449 acetyltransferase, GNAT family fused to PaaI related uncharacterized conserved domain; thioesterase domain-containing protein complement(4759935..4760861) Pseudoalteromonas atlantica T6c 4175729 YP_663504.1 CDS Patl_3950 NC_008228.1 4760957 4761394 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(4760957..4761394) Pseudoalteromonas atlantica T6c 4175730 YP_663505.1 CDS Patl_3951 NC_008228.1 4761391 4762359 R KEGG: pfo:Pfl_0371 peptidase S33, proline iminopeptidase 1; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase complement(4761391..4762359) Pseudoalteromonas atlantica T6c 4175731 YP_663506.1 CDS Patl_3952 NC_008228.1 4762454 4762681 D KEGG: pha:PSHAa0123 hypothetical protein; hypothetical protein 4762454..4762681 Pseudoalteromonas atlantica T6c 4175732 YP_663507.1 CDS Patl_3953 NC_008228.1 4762702 4763340 D KEGG: son:SO4403 hypothetical protein; hypothetical protein 4762702..4763340 Pseudoalteromonas atlantica T6c 4175733 YP_663508.1 CDS rbn NC_008228.1 4763354 4764256 R RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN complement(4763354..4764256) Pseudoalteromonas atlantica T6c 4175734 YP_663509.1 CDS Patl_3955 NC_008228.1 4764293 4765177 R KEGG: hin:HI1444 510 methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase complement(4764293..4765177) Pseudoalteromonas atlantica T6c 4175735 YP_663510.1 CDS Patl_3956 NC_008228.1 4765324 4765647 D when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 4765324..4765647 Pseudoalteromonas atlantica T6c 4175736 YP_663511.1 CDS Patl_3957 NC_008228.1 4765751 4766416 R PFAM: glutathione S-transferase-like; KEGG: bur:Bcep18194_B2249 glutathione S-transferase-like; glutathione S-transferase-like protein complement(4765751..4766416) Pseudoalteromonas atlantica T6c 4175737 YP_663512.1 CDS Patl_3958 NC_008228.1 4766572 4766898 R PFAM: cytochrome c, class I; KEGG: cps:CPS_0313 cytochrome c552; cytochrome c, class I complement(4766572..4766898) Pseudoalteromonas atlantica T6c 4175738 YP_663513.1 CDS Patl_3959 NC_008228.1 4766965 4768407 D PFAM: protein of unknown function UPF0061; KEGG: vpa:VP0909 hypothetical protein; hypothetical protein 4766965..4768407 Pseudoalteromonas atlantica T6c 4175739 YP_663514.1 CDS Patl_3960 NC_008228.1 4768536 4771433 D TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: hch:HCH_05755 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4768536..4771433 Pseudoalteromonas atlantica T6c 4175740 YP_663515.1 CDS Patl_3961 NC_008228.1 4771522 4772136 D PFAM: GTP cyclohydrolase II; KEGG: vpa:VPA0006 GTP cyclohydrolase II; GTP cyclohydrolase II 4771522..4772136 Pseudoalteromonas atlantica T6c 4175741 YP_663516.1 CDS Patl_3962 NC_008228.1 4772305 4773633 D KEGG: son:SO4649 hypothetical protein; hypothetical protein 4772305..4773633 Pseudoalteromonas atlantica T6c 4175742 YP_663517.1 CDS Patl_3963 NC_008228.1 4773736 4774068 R hypothetical protein complement(4773736..4774068) Pseudoalteromonas atlantica T6c 4175743 YP_663518.1 CDS Patl_3964 NC_008228.1 4774574 4775626 D PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: pca:Pcar_1018 peptidylarginine deiminase-related protein; peptidyl-arginine deiminase 4774574..4775626 Pseudoalteromonas atlantica T6c 4175744 YP_663519.1 CDS Patl_3965 NC_008228.1 4775623 4776531 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bfs:BF2465 putative hydrolase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 4775623..4776531 Pseudoalteromonas atlantica T6c 4175745 YP_663520.1 CDS Patl_3966 NC_008228.1 4776657 4777673 R catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase complement(4776657..4777673) Pseudoalteromonas atlantica T6c 4175746 YP_663521.1 CDS Patl_3967 NC_008228.1 4777795 4778169 D PFAM: protein of unknown function DUF1696; KEGG: son:SO3796 hypothetical protein; hypothetical protein 4777795..4778169 Pseudoalteromonas atlantica T6c 4175747 YP_663522.1 CDS Patl_3968 NC_008228.1 4778260 4780467 R PFAM: peptidase S15 peptidase S9, prolyl oligopeptidase active site region peptidase S9B, dipeptidylpeptidase IV-like; KEGG: pha:PSHAa2386 dipeptidyl peptidase IV; peptidase S9B, dipeptidylpeptidase IV-like complement(4778260..4780467) Pseudoalteromonas atlantica T6c 4175748 YP_663523.1 CDS Patl_3969 NC_008228.1 4780531 4781181 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: gka:GK0979 semialdehyde dehydrogenase; NAD-dependent epimerase/dehydratase 4780531..4781181 Pseudoalteromonas atlantica T6c 4175749 YP_663524.1 CDS Patl_3970 NC_008228.1 4781225 4782016 D PFAM: methyltransferase small Methyltransferase type 12; KEGG: bth:BT0838 putative RNA methyltransferase; methyltransferase small 4781225..4782016 Pseudoalteromonas atlantica T6c 4175750 YP_663525.1 CDS Patl_3971 NC_008228.1 4782130 4782507 D hypothetical protein 4782130..4782507 Pseudoalteromonas atlantica T6c 4175751 YP_663526.1 CDS Patl_3972 NC_008228.1 4782584 4783777 R TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding Domain of unknown function DUF1730; KEGG: pha:PSHAa2485 4Fe-4S ferredoxin; putative iron-sulfur cluster binding protein complement(4782584..4783777) Pseudoalteromonas atlantica T6c 4175752 YP_663527.1 CDS Patl_3973 NC_008228.1 4783786 4785300 D TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031 YjeF-related protein-like; KEGG: ppr:PBPRA3355 hypothetical protein; carbohydrate kinase 4783786..4785300 Pseudoalteromonas atlantica T6c 4175753 YP_663528.1 CDS Patl_3974 NC_008228.1 4785297 4785758 D PFAM: protein of unknown function UPF0079; KEGG: ppr:PBPRA3354 putative nucleotide-binding protein; hypothetical protein 4785297..4785758 Pseudoalteromonas atlantica T6c 4175754 YP_663529.1 CDS Patl_3975 NC_008228.1 4785800 4787092 D PFAM: Peptidoglycan-binding LysM cell wall hydrolase/autolysin; KEGG: pha:PSHAa0268 N-acetylmuramoyl-L-alanine amidase II; N-acetylmuramoyl-L-alanine amidase 4785800..4787092 Pseudoalteromonas atlantica T6c 4175755 YP_663530.1 CDS Patl_3976 NC_008228.1 4787142 4789061 D TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region, ATPase-like DNA mismatch repair protein-like; KEGG: vvy:VV3073 DNA mismatch repair enzyme; DNA mismatch repair protein MutL 4787142..4789061 Pseudoalteromonas atlantica T6c 4175756 YP_663531.1 CDS Patl_3977 NC_008228.1 4789045 4789992 D KEGG: son:SO0602 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 4789045..4789992 Pseudoalteromonas atlantica T6c 4175757 YP_663532.1 CDS Patl_3978 NC_008228.1 4790072 4790323 D TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: eca:ECA3934 putative phage-related protein (host factor-I protein); RNA chaperone Hfq 4790072..4790323 Pseudoalteromonas atlantica T6c 4175758 YP_663533.1 CDS Patl_3979 NC_008228.1 4790349 4791647 D PFAM: GTP-binding protein, HSR1-related; KEGG: vpa:VP2816 GTP-binding protein HflX; HSR1-like GTP-binding protein 4790349..4791647 Pseudoalteromonas atlantica T6c 4175759 YP_663534.1 CDS Patl_3980 NC_008228.1 4791711 4792859 D TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: pha:PSHAa0273 hypothetical protein; HflK protein 4791711..4792859 Pseudoalteromonas atlantica T6c 4175760 YP_663535.1 CDS Patl_3981 NC_008228.1 4792863 4793747 D TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: pha:PSHAa0274 hypothetical protein; HflC protein 4792863..4793747 Pseudoalteromonas atlantica T6c 4175761 YP_663536.1 CDS Patl_3982 NC_008228.1 4794102 4794533 R KEGG: pha:PSHAa1486 hypothetical protein; hypothetical protein complement(4794102..4794533) Pseudoalteromonas atlantica T6c 4175762 YP_663537.1 CDS Patl_3983 NC_008228.1 4794587 4795246 R PFAM: glutathione S-transferase-like; KEGG: hch:HCH_06415 glutathione S-transferase; glutathione S-transferase-like protein complement(4794587..4795246) Pseudoalteromonas atlantica T6c 4175763 YP_663538.1 CDS Patl_3984 NC_008228.1 4795260 4795868 R PFAM: glutathione S-transferase-like; KEGG: hch:HCH_06414 glutathione S-transferase; glutathione S-transferase-like protein complement(4795260..4795868) Pseudoalteromonas atlantica T6c 4175764 YP_663539.1 CDS Patl_3985 NC_008228.1 4795917 4797812 R PFAM: extracellular solute-binding protein, family 1; KEGG: hch:HCH_00071 ABC-type sugar transport system, periplasmic component; extracellular solute-binding protein complement(4795917..4797812) Pseudoalteromonas atlantica T6c 4175765 YP_663540.1 CDS Patl_3986 NC_008228.1 4798006 4798425 R KEGG: rba:RB9087 hypothetical protein-transmembrane prediction; hypothetical protein complement(4798006..4798425) Pseudoalteromonas atlantica T6c 4175766 YP_663541.1 CDS hemH NC_008228.1 4798425 4799507 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(4798425..4799507) Pseudoalteromonas atlantica T6c 4175767 YP_663542.1 CDS Patl_3988 NC_008228.1 4799610 4801208 R PFAM: C4-dicarboxylate anaerobic carrier AbgT putative transporter; KEGG: pha:PSHAa0700 p-aminobenzoyl-glutamate transport protein (AbgT); AbgT transporter complement(4799610..4801208) Pseudoalteromonas atlantica T6c 4175768 YP_663543.1 CDS Patl_3989 NC_008228.1 4801430 4801963 D KEGG: ana:all3032 hypothetical protein; hypothetical protein 4801430..4801963 Pseudoalteromonas atlantica T6c 4175769 YP_663544.1 CDS Patl_3990 NC_008228.1 4801972 4803729 D PFAM: OmpA/MotB; KEGG: ana:all3031 OmpA-OmpF porin, OOP family; OmpA/MotB protein 4801972..4803729 Pseudoalteromonas atlantica T6c 4175770 YP_663545.1 CDS Patl_3991 NC_008228.1 4803747 4804250 D KEGG: ana:all3030 similar to Ras family protein; TIGRFAM: small GTP-binding protein; PFAM: Miro-like Ras; SMART: Ras small GTPase, Ras type Ras small GTPase, Rab type; small GTP-binding protein 4803747..4804250 Pseudoalteromonas atlantica T6c 4175771 YP_663546.1 CDS Patl_3992 NC_008228.1 4804247 4806403 D TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: psb:Psyr_4770 PAS:GGDEF; diguanylate cyclase/phosphodiesterase 4804247..4806403 Pseudoalteromonas atlantica T6c 4175772 YP_663547.1 CDS Patl_3993 NC_008228.1 4806360 4807544 R PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: ilo:IL0178 glutaryl-CoA dehydrogenase; glutaryl-CoA dehydrogenase complement(4806360..4807544) Pseudoalteromonas atlantica T6c 4175773 YP_663548.1 CDS Patl_3994 NC_008228.1 4807609 4808661 R PFAM: aldo/keto reductase; KEGG: vfi:VFA0836 Tas protein; aldo/keto reductase complement(4807609..4808661) Pseudoalteromonas atlantica T6c 4175774 YP_663549.1 CDS Patl_3995 NC_008228.1 4808715 4809128 R hypothetical protein complement(4808715..4809128) Pseudoalteromonas atlantica T6c 4175775 YP_663550.1 CDS Patl_3996 NC_008228.1 4809741 4810925 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(4809741..4810925) Pseudoalteromonas atlantica T6c 4175776 YP_663551.1 CDS Patl_3997 NC_008228.1 4811511 4812251 R TIGRFAM: putative transcriptional activator, Baf family; KEGG: aci:ACIAD0840 putative transcriptional regulator; Baf family transcriptional activator complement(4811511..4812251) Pseudoalteromonas atlantica T6c 4175781 YP_663552.1 CDS Patl_3998 NC_008228.1 4812235 4813221 R KEGG: vpa:VP2931 BirA bifunctional protein; TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase-like biotin/lipoate A/B protein ligase Helix-turn-helix, type 11; biotin--acetyl-CoA-carboxylase ligase complement(4812235..4813221) Pseudoalteromonas atlantica T6c 4175782 YP_663553.1 CDS murB NC_008228.1 4813218 4814255 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(4813218..4814255) Pseudoalteromonas atlantica T6c 4175783 YP_663554.1 CDS Patl_4000 NC_008228.1 4814303 4816429 R PFAM: lipopolysaccharide biosynthesis; KEGG: vch:VC0937 exopolysaccharide biosynthesis protein, putative; protein-tyrosine kinase complement(4814303..4816429) Pseudoalteromonas atlantica T6c 4175784 YP_663555.1 CDS Patl_4001 NC_008228.1 4816432 4817010 R PFAM: polysaccharide export protein; KEGG: hch:HCH_04680 periplasmic protein involved in polysaccharide export; polysaccharide export protein complement(4816432..4817010) Pseudoalteromonas atlantica T6c 4175785 YP_663556.1 CDS Patl_4002 NC_008228.1 4817020 4818867 R PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: plu:plu4809 WblM protein; polysaccharide biosynthesis protein CapD complement(4817020..4818867) Pseudoalteromonas atlantica T6c 4175786 YP_663557.1 CDS Patl_4003 NC_008228.1 4818864 4820042 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: nma:NMA0638 pilin glycosylation protein; DegT/DnrJ/EryC1/StrS aminotransferase complement(4818864..4820042) Pseudoalteromonas atlantica T6c 4175787 YP_663558.1 CDS Patl_4004 NC_008228.1 4820070 4820705 R KEGG: dps:DP0029 pilin glycosylation protein; pilin glycosylation protein complement(4820070..4820705) Pseudoalteromonas atlantica T6c 4175788 YP_663559.1 CDS Patl_4005 NC_008228.1 4820695 4821315 R PFAM: sugar transferase; KEGG: eli:ELI_13365 putative UDP-galactose phosphate transferase; sugar transferase complement(4820695..4821315) Pseudoalteromonas atlantica T6c 4175789 YP_663560.1 CDS Patl_4006 NC_008228.1 4821308 4822492 R PFAM: glycosyl transferase, group 1; KEGG: bja:bll3648 probable glycosyl transferase; group 1 glycosyl transferase complement(4821308..4822492) Pseudoalteromonas atlantica T6c 4175790 YP_663561.1 CDS Patl_4007 NC_008228.1 4822489 4823661 R PFAM: glycosyl transferase, group 1; KEGG: pca:Pcar_1798 glycosyltransferase-like; group 1 glycosyl transferase complement(4822489..4823661) Pseudoalteromonas atlantica T6c 4175791 YP_663562.1 CDS Patl_4008 NC_008228.1 4823667 4825025 R hypothetical protein complement(4823667..4825025) Pseudoalteromonas atlantica T6c 4175792 YP_663563.1 CDS Patl_4009 NC_008228.1 4825009 4826106 R PFAM: glycosyl transferase, group 1; KEGG: fra:Francci3_1310 glycosyl transferase, group 1; group 1 glycosyl transferase complement(4825009..4826106) Pseudoalteromonas atlantica T6c 4175793 YP_663564.1 CDS Patl_4010 NC_008228.1 4826099 4827361 R KEGG: cef:CE0378 hypothetical protein; hypothetical protein complement(4826099..4827361) Pseudoalteromonas atlantica T6c 4175794 YP_663565.1 CDS Patl_4011 NC_008228.1 4827808 4828515 R hypothetical protein complement(4827808..4828515) Pseudoalteromonas atlantica T6c 4175795 YP_663566.1 CDS Patl_4013 NC_008228.1 4830363 4831019 R PFAM: carbonic anhydrase; KEGG: psb:Psyr_0288 carbonate dehydratase; carbonate dehydratase complement(4830363..4831019) Pseudoalteromonas atlantica T6c 4175797 YP_663567.1 CDS Patl_4014 NC_008228.1 4831158 4832102 D PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: eli:ELI_02280 hydrogen peroxide-inducible genes activator protein; LysR family transcriptional regulator 4831158..4832102 Pseudoalteromonas atlantica T6c 4175798 YP_663568.1 CDS Patl_4015 NC_008228.1 4839129 4839584 D PFAM: RNA-binding region RNP-1 (RNA recognition motif); KEGG: pha:PSHAa0253 hypothetical protein; RNA-binding region RNP-1 4839129..4839584 Pseudoalteromonas atlantica T6c 4175804 YP_663569.1 CDS Patl_4016 NC_008228.1 4839668 4840858 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(4839668..4840858) Pseudoalteromonas atlantica T6c 4175805 YP_663570.1 CDS Patl_4017 NC_008228.1 4840942 4841709 R PFAM: protein of unknown function DUF833; KEGG: gsu:GSU0792 hypothetical protein; hypothetical protein complement(4840942..4841709) Pseudoalteromonas atlantica T6c 4175806 YP_663571.1 CDS Patl_4018 NC_008228.1 4841735 4842721 R PFAM: Forkhead-associated; KEGG: cps:CPS_0481 FHA domain protein; FHA domain-containing protein complement(4841735..4842721) Pseudoalteromonas atlantica T6c 4175807 YP_663572.1 CDS Patl_4019 NC_008228.1 4842712 4844049 R PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: cps:CPS_0482 serine protease; peptidase S1 and S6, chymotrypsin/Hap complement(4842712..4844049) Pseudoalteromonas atlantica T6c 4175808 YP_663573.1 CDS Patl_4020 NC_008228.1 4844094 4844726 D PFAM: phospholipid/glycerol acyltransferase; KEGG: ilo:IL2144 acyltransferase family protein; phospholipid/glycerol acyltransferase 4844094..4844726 Pseudoalteromonas atlantica T6c 4175809 YP_663574.1 CDS Patl_4021 NC_008228.1 4844723 4845964 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: bbr:BB1977 hypothetical protein; hypothetical protein 4844723..4845964 Pseudoalteromonas atlantica T6c 4175810 YP_663575.1 CDS Patl_4022 NC_008228.1 4846057 4846452 R PFAM: OsmC-like protein; KEGG: neu:NE1136 putative redox protein; OsmC-like protein complement(4846057..4846452) Pseudoalteromonas atlantica T6c 4175811 YP_663576.1 CDS Patl_4023 NC_008228.1 4846488 4847321 R KEGG: bth:BT2505 hypothetical protein; hypothetical protein complement(4846488..4847321) Pseudoalteromonas atlantica T6c 4175812 YP_663577.1 CDS Patl_4024 NC_008228.1 4847494 4848351 D PFAM: aminotransferase, class IV; KEGG: noc:Noc_2631 D-alanine transaminase; class IV aminotransferase 4847494..4848351 Pseudoalteromonas atlantica T6c 4175813 YP_663578.1 CDS Patl_4025 NC_008228.1 4848361 4849488 D KEGG: pae:PA4930 biosynthetic alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase-like; alanine racemase 4848361..4849488 Pseudoalteromonas atlantica T6c 4175814 YP_663579.1 CDS Patl_4026 NC_008228.1 4849503 4850474 R TIGRFAM: putative methyltransferase; PFAM: methyltransferase, putative Methyltransferase type 11 Methyltransferase type 12; KEGG: pha:PSHAa1946 methyltransferase with S-adenosyl-L-methionine-dependent methyltransferase domain; putative methyltransferase complement(4849503..4850474) Pseudoalteromonas atlantica T6c 4175815 YP_663580.1 CDS Patl_4027 NC_008228.1 4850510 4851241 R TIGRFAM: putative methyltransferase; PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: pha:PSHAa1945 methyltransferase with S-adenosyl-L-methionine-dependent methyltransferase domain; putative methyltransferase complement(4850510..4851241) Pseudoalteromonas atlantica T6c 4175816 YP_663581.1 CDS Patl_4028 NC_008228.1 4851513 4852151 D PFAM: regulatory protein, LuxR response regulator receiver Bacterio-opsin activator, HTH Sigma-70, region 4 type 2; KEGG: pha:PSHAa0699 regulator in two-component regulatory system ; LuxR; two component LuxR family transcriptional regulator 4851513..4852151 Pseudoalteromonas atlantica T6c 4175817 YP_663582.1 CDS Patl_4029 NC_008228.1 4852228 4853727 R KEGG: pha:PSHAa0251 hypothetical protein; putative CheA signal transduction histidine kinase complement(4852228..4853727) Pseudoalteromonas atlantica T6c 4175818 YP_663583.1 CDS Patl_4030 NC_008228.1 4853810 4854907 D catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 4853810..4854907 Pseudoalteromonas atlantica T6c 4175819 YP_663584.1 CDS Patl_4031 NC_008228.1 4854904 4855503 R negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR complement(4854904..4855503) Pseudoalteromonas atlantica T6c 4175820 YP_663585.1 CDS Patl_4032 NC_008228.1 4855663 4856790 D PFAM: fatty acid desaturase; KEGG: ppr:PBPRB0742 hypothetical putative delta-9 fatty acid desaturase; stearoyl-CoA 9-desaturase 4855663..4856790 Pseudoalteromonas atlantica T6c 4175821 YP_663586.1 CDS Patl_4033 NC_008228.1 4856980 4857306 R hypothetical protein complement(4856980..4857306) Pseudoalteromonas atlantica T6c 4175822 YP_663587.1 CDS Patl_4034 NC_008228.1 4857485 4857994 D PFAM: Uracil-DNA glycosylase superfamily; KEGG: vvy:VV3149 uracil-DNA glycosylase; uracil-DNA glycosylase superfamily protein 4857485..4857994 Pseudoalteromonas atlantica T6c 4175823 YP_663588.1 CDS Patl_4035 NC_008228.1 4857998 4860238 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL response regulator receiver; KEGG: cps:CPS_0394 response regulator/GGDEF/EAL domain protein; response regulator receiver modulated diguanylate cyclase/phosphodiesterase complement(4857998..4860238) Pseudoalteromonas atlantica T6c 4175824 YP_663589.1 CDS Patl_4036 NC_008228.1 4860416 4861315 D KEGG: cps:CPS_0395 hypothetical protein; hypothetical protein 4860416..4861315 Pseudoalteromonas atlantica T6c 4175825 YP_663590.1 CDS Patl_4037 NC_008228.1 4861312 4862082 R PFAM: phosphoadenosine phosphosulfate reductase; KEGG: vch:VC0386 phosphoadenosine phosphosulfate reductase; phosphoadenosine phosphosulfate reductase complement(4861312..4862082) Pseudoalteromonas atlantica T6c 4175826 YP_663591.1 CDS Patl_4038 NC_008228.1 4862075 4863784 R hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta complement(4862075..4863784) Pseudoalteromonas atlantica T6c 4175827 YP_663592.1 CDS Patl_4039 NC_008228.1 4863784 4865616 R TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: oxidoreductase FAD/NAD(P)-binding FAD-binding flavodoxin/nitric oxide synthase; KEGG: cps:CPS_4759 sulfite reductase (NADPH) flavoprotein alpha-component; sulfite reductase (NADPH) flavoprotein subunit alpha complement(4863784..4865616) Pseudoalteromonas atlantica T6c 4175828 YP_663593.1 CDS Patl_4040 NC_008228.1 4865748 4866506 R KEGG: pha:PSHAa0505 hypothetical protein; hypothetical protein complement(4865748..4866506) Pseudoalteromonas atlantica T6c 4175829 YP_663594.1 CDS Patl_4041 NC_008228.1 4866510 4867496 R KEGG: pha:PSHAa0504 hypothetical protein; hypothetical protein complement(4866510..4867496) Pseudoalteromonas atlantica T6c 4175830 YP_663595.1 CDS Patl_4042 NC_008228.1 4867506 4867949 R PFAM: protein of unknown function DUF461; KEGG: tcx:Tcr_1566 protein of unknown function DUF461; hypothetical protein complement(4867506..4867949) Pseudoalteromonas atlantica T6c 4175831 YP_663596.1 CDS Patl_4043 NC_008228.1 4868065 4868544 R KEGG: cps:CPS_4753 hypothetical protein; hypothetical protein complement(4868065..4868544) Pseudoalteromonas atlantica T6c 4175832 YP_663597.1 CDS Patl_4044 NC_008228.1 4868685 4869344 R PFAM: PspA/IM30; KEGG: son:SO1807 phage shock protein A; phage shock protein A, PspA complement(4868685..4869344) Pseudoalteromonas atlantica T6c 4175833 YP_663598.1 CDS Patl_4045 NC_008228.1 4869696 4869989 D KEGG: hhe:HH0093 hypothetical protein; hypothetical protein 4869696..4869989 Pseudoalteromonas atlantica T6c 4175834 YP_663599.1 CDS Patl_4046 NC_008228.1 4869994 4870689 D PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: rsp:RSP_3062 3-oxoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase SDR 4869994..4870689 Pseudoalteromonas atlantica T6c 4175835 YP_663600.1 CDS Patl_4047 NC_008228.1 4870686 4872029 D PFAM: AMP-dependent synthetase and ligase; KEGG: rsp:RSP_3063 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 4870686..4872029 Pseudoalteromonas atlantica T6c 4175836 YP_663601.1 CDS Patl_4048 NC_008228.1 4872077 4872721 D KEGG: dvu:DVUA0053 hypothetical protein; acetyltransferase 4872077..4872721 Pseudoalteromonas atlantica T6c 4175837 YP_663602.1 CDS Patl_4049 NC_008228.1 4872739 4873791 D hypothetical protein 4872739..4873791 Pseudoalteromonas atlantica T6c 4175838 YP_663603.1 CDS Patl_4050 NC_008228.1 4873981 4874259 R hypothetical protein complement(4873981..4874259) Pseudoalteromonas atlantica T6c 4175839 YP_663604.1 CDS Patl_4051 NC_008228.1 4874473 4875510 R TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: vpa:VP2727 NifR3/Smm1 family protein; tRNA-dihydrouridine synthase A complement(4874473..4875510) Pseudoalteromonas atlantica T6c 4175840 YP_663605.1 CDS Patl_4052 NC_008228.1 4875715 4876260 R KEGG: pha:PSHAb0186 hypothetical protein; hypothetical protein complement(4875715..4876260) Pseudoalteromonas atlantica T6c 4175841 YP_663606.1 CDS Patl_4053 NC_008228.1 4876561 4877115 D PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: ava:Ava_1669 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like protein 4876561..4877115 Pseudoalteromonas atlantica T6c 4175842 YP_663607.1 CDS Patl_4054 NC_008228.1 4877298 4877873 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: hch:HCH_05505 restriction endonuclease; HNH endonuclease 4877298..4877873 Pseudoalteromonas atlantica T6c 4175843 YP_663608.1 CDS Patl_4055 NC_008228.1 4877986 4878888 D PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0348 acyltransferase family protein; putative acyltransferase 4877986..4878888 Pseudoalteromonas atlantica T6c 4175844 YP_663609.1 CDS Patl_4056 NC_008228.1 4878892 4879788 D PFAM: phospholipid/glycerol acyltransferase; KEGG: vch:VC0033 hypothetical protein; putative acyltransferase 4878892..4879788 Pseudoalteromonas atlantica T6c 4175845 YP_663610.1 CDS Patl_4057 NC_008228.1 4879789 4881033 D PFAM: MscS Mechanosensitive ion channel; KEGG: bfs:BF0722 putative transmembrane transport protein; mechanosensitive ion channel protein MscS 4879789..4881033 Pseudoalteromonas atlantica T6c 4175846 YP_663611.1 CDS Patl_4058 NC_008228.1 4881574 4882353 D KEGG: cps:CPS_1542 hypothetical protein; hypothetical protein 4881574..4882353 Pseudoalteromonas atlantica T6c 4175847 YP_663612.1 CDS Patl_4059 NC_008228.1 4882440 4883291 D PFAM: NAD-dependent epimerase/dehydratase dTDP-4-dehydrorhamnose reductase; KEGG: ppr:PBPRA2429 hypothetical enzyme of sugar metabolism; dTDP-4-dehydrorhamnose reductase 4882440..4883291 Pseudoalteromonas atlantica T6c 4175848 YP_663613.1 CDS Patl_4060 NC_008228.1 4883361 4884782 R PFAM: sodium:neurotransmitter symporter; KEGG: pha:PSHAa1286 sodium-dependent transporter; sodium:neurotransmitter symporter complement(4883361..4884782) Pseudoalteromonas atlantica T6c 4175849 YP_663614.1 CDS Patl_4061 NC_008228.1 4884923 4885684 R KEGG: cps:CPS_0516 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase/reductase family oxidoreductase complement(4884923..4885684) Pseudoalteromonas atlantica T6c 4175850 YP_663615.1 CDS Patl_4062 NC_008228.1 4885681 4886106 R PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: ilo:IL2053 potential redox protein; putative thiol-disulfide oxidoreductase DCC complement(4885681..4886106) Pseudoalteromonas atlantica T6c 4175851 YP_663616.1 CDS Patl_4063 NC_008228.1 4886275 4886817 D KEGG: cps:CPS_4817 peptide methionine sulfoxide reductase MsrA; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 4886275..4886817 Pseudoalteromonas atlantica T6c 4175852 YP_663617.1 CDS Patl_4064 NC_008228.1 4886814 4887992 R hypothetical protein complement(4886814..4887992) Pseudoalteromonas atlantica T6c 4175853 YP_663618.1 CDS Patl_4065 NC_008228.1 4888127 4891264 R PFAM: glycoside hydrolase, family 42, domain 5, loop region glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, TIM barrel glycoside hydrolase family 2, sugar binding; KEGG: tma:TM1193 beta-galactosidase; glycoside hydrolase complement(4888127..4891264) Pseudoalteromonas atlantica T6c 4175854 YP_663619.1 CDS Patl_4066 NC_008228.1 4891556 4892017 D hypothetical protein 4891556..4892017 Pseudoalteromonas atlantica T6c 4175855 YP_663620.1 CDS Patl_4067 NC_008228.1 4892146 4892694 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic; flavodoxin FldB 4892146..4892694 Pseudoalteromonas atlantica T6c 4175856 YP_663621.1 CDS Patl_4068 NC_008228.1 4892691 4893491 D KEGG: pha:PSHAa1320 hypothetical protein; hypothetical protein 4892691..4893491 Pseudoalteromonas atlantica T6c 4175857 YP_663622.1 CDS Patl_4069 NC_008228.1 4893888 4894295 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: son:SO1827 TonB system transport protein ExbD2; biopolymer transport protein ExbD/TolR 4893888..4894295 Pseudoalteromonas atlantica T6c 4175858 YP_663623.1 CDS Patl_4070 NC_008228.1 4894456 4894941 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(4894456..4894941) Pseudoalteromonas atlantica T6c 4175859 YP_663624.1 CDS Patl_4071 NC_008228.1 4895148 4895657 D PFAM: phosphoesterase, PA-phosphatase related; KEGG: vch:VC2488 hypothetical protein; PA-phosphatase-like phosphoesterase 4895148..4895657 Pseudoalteromonas atlantica T6c 4175860 YP_663625.1 CDS Patl_4072 NC_008228.1 4895741 4896817 D TIGRFAM: conserved hypothetical protein; KEGG: vch:VC2487 hypothetical protein; hypothetical protein 4895741..4896817 Pseudoalteromonas atlantica T6c 4175861 YP_663626.1 CDS Patl_4073 NC_008228.1 4897152 4898399 D TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pha:PSHAa0093 diaminopimelate decarboxylase; diaminopimelate decarboxylase 4897152..4898399 Pseudoalteromonas atlantica T6c 4175862 YP_663627.1 CDS dapF NC_008228.1 4898586 4899416 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 4898586..4899416 Pseudoalteromonas atlantica T6c 4175863 YP_663628.1 CDS Patl_4075 NC_008228.1 4899413 4900111 D PFAM: protein of unknown function DUF484; KEGG: ilo:IL2554 uncharacterized conserved protein, YigA-like; hypothetical protein 4899413..4900111 Pseudoalteromonas atlantica T6c 4175864 YP_663629.1 CDS Patl_4076 NC_008228.1 4900127 4901023 D PFAM: phage integrase phage integrase-like SAM-like; KEGG: ppr:PBPRA3520 putative integrase/recombinase XerC; phage integrase 4900127..4901023 Pseudoalteromonas atlantica T6c 4175865 YP_663630.1 CDS Patl_4077 NC_008228.1 4901071 4901787 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: vpa:VP2980 hypothetical protein; HAD family hydrolase 4901071..4901787 Pseudoalteromonas atlantica T6c 4175866 YP_663631.1 CDS Patl_4078 NC_008228.1 4901884 4902663 R KEGG: pha:PSHAa0645 serine acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat serine acetyltransferase-like; serine O-acetyltransferase complement(4901884..4902663) Pseudoalteromonas atlantica T6c 4175867 YP_663632.1 CDS Patl_4079 NC_008228.1 4902812 4904986 D TIGRFAM: DNA helicase II; PFAM: UvrD/REP helicase; KEGG: sec:SC3850 DNA-dependent ATPase I and helicase II; DNA helicase II 4902812..4904986 Pseudoalteromonas atlantica T6c 4175868 YP_663633.1 CDS Patl_4080 NC_008228.1 4905076 4906332 D TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein response regulator receiver; KEGG: hch:HCH_06018 response regulator containing a CheY-like receiver domain and a GGDEF domain; diguanylate cyclase 4905076..4906332 Pseudoalteromonas atlantica T6c 4175869 YP_663634.1 CDS Patl_4081 NC_008228.1 4906352 4907272 R TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: ilo:IL2549 conserved membrane protein RarD; transporter DMT superfamily protein complement(4906352..4907272) Pseudoalteromonas atlantica T6c 4175870 YP_663635.1 CDS Patl_4082 NC_008228.1 4907430 4907687 D hypothetical protein 4907430..4907687 Pseudoalteromonas atlantica T6c 4175871 YP_663636.1 CDS Patl_4083 NC_008228.1 4908063 4908635 D KEGG: pha:PSHAa0583 hypothetical protein; hypothetical protein 4908063..4908635 Pseudoalteromonas atlantica T6c 4175872 YP_663637.1 CDS Patl_4084 NC_008228.1 4908649 4909572 D PFAM: formate/nitrite transporter; KEGG: par:Psyc_1851 formate/nitrite transporter family (FNT); formate/nitrite transporter 4908649..4909572 Pseudoalteromonas atlantica T6c 4175873 YP_663638.1 CDS Patl_4085 NC_008228.1 4909660 4910055 R KEGG: pfo:Pfl_1447 hypothetical protein; hypothetical protein complement(4909660..4910055) Pseudoalteromonas atlantica T6c 4175874 YP_663639.1 CDS Patl_4086 NC_008228.1 4910437 4910877 D PFAM: Hemerythrin HHE cation binding region; KEGG: vpa:VP0084 hypothetical protein; hemerythrin HHE cation binding protein 4910437..4910877 Pseudoalteromonas atlantica T6c 4175875 YP_663640.1 CDS Patl_4087 NC_008228.1 4910906 4911487 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: vfi:VFA0032 thioredoxin peroxidase; redoxin 4910906..4911487 Pseudoalteromonas atlantica T6c 4175876 YP_663641.1 CDS Patl_4088 NC_008228.1 4911731 4913353 D PFAM: Dual specificity protein phosphatase diacylglycerol kinase, catalytic region; SMART: Protein tyrosine phosphatase, catalytic region; KEGG: vpa:VP0085 methylglyoxal synthase; hypothetical protein 4911731..4913353 Pseudoalteromonas atlantica T6c 4175877 YP_663642.1 CDS Patl_4089 NC_008228.1 4913734 4914279 D KEGG: ccr:CC1285 hypothetical protein; hypothetical protein 4913734..4914279 Pseudoalteromonas atlantica T6c 4175878 YP_663643.1 CDS Patl_4090 NC_008228.1 4914379 4915428 D PFAM: MscS Mechanosensitive ion channel; KEGG: pha:PSHAa2557 mechanosensitive channel protein; mechanosensitive ion channel protein MscS 4914379..4915428 Pseudoalteromonas atlantica T6c 4175879 YP_663644.1 CDS Patl_4091 NC_008228.1 4915875 4916318 D TIGRFAM: conserved hypothetical protein; KEGG: pha:PSHAa1823 hypothetical protein; hypothetical protein 4915875..4916318 Pseudoalteromonas atlantica T6c 4175880 YP_663645.1 CDS Patl_4092 NC_008228.1 4916543 4916842 R hypothetical protein complement(4916543..4916842) Pseudoalteromonas atlantica T6c 4175881 YP_663646.1 CDS Patl_4093 NC_008228.1 4917027 4918118 R hypothetical protein complement(4917027..4918118) Pseudoalteromonas atlantica T6c 4175882 YP_663647.1 CDS Patl_4094 NC_008228.1 4918214 4918546 D PFAM: conserved hypothetical protein; KEGG: cps:CPS_3577 GGDEF domain protein; diguanylate cyclase 4918214..4918546 Pseudoalteromonas atlantica T6c 4175883 YP_663648.1 CDS Patl_4095 NC_008228.1 4918626 4919042 R KEGG: pha:PSHAa1701 hypothetical protein; hypothetical protein complement(4918626..4919042) Pseudoalteromonas atlantica T6c 4175884 YP_663649.1 CDS Patl_4096 NC_008228.1 4919598 4921205 D TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: eba:ebA6339 modification methylase (cytosine-specific methyltransferase; DNA-cytosine methyltransferase 4919598..4921205 Pseudoalteromonas atlantica T6c 4175885 YP_663650.1 CDS Patl_4097 NC_008228.1 4921386 4923176 R KEGG: hpj:jhp1287 rod shape-determining protein; hypothetical protein complement(4921386..4923176) Pseudoalteromonas atlantica T6c 4175886 YP_663651.1 CDS Patl_4098 NC_008228.1 4923198 4924622 R hypothetical protein complement(4923198..4924622) Pseudoalteromonas atlantica T6c 4175887 YP_663652.1 CDS Patl_4099 NC_008228.1 4924775 4926595 R PFAM: NERD; KEGG: mca:MCA0729 hypothetical protein; NERD domain-contain protein complement(4924775..4926595) Pseudoalteromonas atlantica T6c 4175888 YP_663653.1 CDS Patl_4100 NC_008228.1 4926595 4928490 R KEGG: hch:HCH_05713 hypothetical protein; hypothetical protein complement(4926595..4928490) Pseudoalteromonas atlantica T6c 4175889 YP_663654.1 CDS Patl_4101 NC_008228.1 4928538 4931753 R PFAM: helicase-like; KEGG: sth:STH1306 putative DNA helicase; helicase-like protein complement(4928538..4931753) Pseudoalteromonas atlantica T6c 4175890 YP_663655.1 CDS Patl_4102 NC_008228.1 4931760 4934045 R KEGG: neu:NE0093 ATP-dependent DNA helicase; superfamily I DNA/RNA helicase-like protein complement(4931760..4934045) Pseudoalteromonas atlantica T6c 4175891 YP_663656.1 CDS Patl_4103 NC_008228.1 4934467 4936227 R PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: vpa:VP0880 hypothetical protein; type 12 methyltransferase complement(4934467..4936227) Pseudoalteromonas atlantica T6c 4175892 YP_663657.1 CDS Patl_4104 NC_008228.1 4936717 4937601 D hypothetical protein 4936717..4937601 Pseudoalteromonas atlantica T6c 4175893 YP_663658.1 CDS Patl_4105 NC_008228.1 4937651 4938391 R PFAM: protein of unknown function DUF81; KEGG: pha:PSHAa2083 hypothetical protein ; membrane protein; hypothetical protein complement(4937651..4938391) Pseudoalteromonas atlantica T6c 4175894 YP_663659.1 CDS Patl_4106 NC_008228.1 4938883 4940073 D KEGG: hch:HCH_06070 hypothetical protein; hypothetical protein 4938883..4940073 Pseudoalteromonas atlantica T6c 4175895 YP_663660.1 CDS Patl_4107 NC_008228.1 4940073 4940492 D KEGG: vch:VC2455 hypothetical protein; hypothetical protein 4940073..4940492 Pseudoalteromonas atlantica T6c 4175896 YP_663661.1 CDS Patl_4108 NC_008228.1 4940699 4941898 D KEGG: hch:HCH_06070 hypothetical protein; hypothetical protein 4940699..4941898 Pseudoalteromonas atlantica T6c 4175897 YP_663662.1 CDS Patl_4109 NC_008228.1 4941898 4942317 D KEGG: eba:ebB54 hypothetical protein; hypothetical protein 4941898..4942317 Pseudoalteromonas atlantica T6c 4175898 YP_663663.1 CDS Patl_4110 NC_008228.1 4942583 4943782 D KEGG: hch:HCH_06070 hypothetical protein; hypothetical protein 4942583..4943782 Pseudoalteromonas atlantica T6c 4175899 YP_663664.1 CDS Patl_4111 NC_008228.1 4943779 4944198 D KEGG: vvy:VV2825 hypothetical protein; hypothetical protein 4943779..4944198 Pseudoalteromonas atlantica T6c 4175900 YP_663665.1 CDS Patl_4112 NC_008228.1 4944296 4945498 D KEGG: hch:HCH_06070 hypothetical protein; hypothetical protein 4944296..4945498 Pseudoalteromonas atlantica T6c 4175901 YP_663666.1 CDS Patl_4113 NC_008228.1 4945498 4945914 D KEGG: eba:ebB54 hypothetical protein; hypothetical protein 4945498..4945914 Pseudoalteromonas atlantica T6c 4175902 YP_663667.1 CDS Patl_4114 NC_008228.1 4945940 4947985 R TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: gsu:GSU2016 sensory box/GGDEF family protein; diguanylate cyclase/phosphodiesterase complement(4945940..4947985) Pseudoalteromonas atlantica T6c 4175903 YP_663668.1 CDS Patl_4115 NC_008228.1 4948630 4950048 D KEGG: sru:SRU_1464 hypothetical protein; hypothetical protein 4948630..4950048 Pseudoalteromonas atlantica T6c 4175904 YP_663669.1 CDS Patl_4116 NC_008228.1 4950158 4951501 D PFAM: extracellular solute-binding protein, family 1; KEGG: sme:SMc01496 probable sorbitol-binding periplasmic protein; extracellular solute-binding protein 4950158..4951501 Pseudoalteromonas atlantica T6c 4175905 YP_663670.1 CDS Patl_4117 NC_008228.1 4951570 4952442 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01497 probable sorbitol/mannitol transport inner membrane transmembrane protein; binding-protein-dependent transport system inner membrane protein 4951570..4952442 Pseudoalteromonas atlantica T6c 4175906 YP_663671.1 CDS Patl_4118 NC_008228.1 4952445 4953275 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01498 probable sorbitol/mannitol transport inner membrane protein; binding-protein-dependent transport system inner membrane protein 4952445..4953275 Pseudoalteromonas atlantica T6c 4175907 YP_663672.1 CDS Patl_4119 NC_008228.1 4953286 4954302 D PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; KEGG: ret:RHE_CH03679 sorbitol/mannitol ABC transporter, ATP-binding protein; ABC transporter-like protein 4953286..4954302 Pseudoalteromonas atlantica T6c 4175908 YP_663673.1 CDS Patl_4120 NC_008228.1 4954583 4955296 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: pha:PSHAb0206 putative unknown enzyme; HAD family hydrolase 4954583..4955296 Pseudoalteromonas atlantica T6c 4175909 YP_663674.1 CDS Patl_4121 NC_008228.1 4955299 4956258 D PFAM: putative sugar-binding region; KEGG: pha:PSHAa1504 transcriptional regulator; DeoR family transcriptional regulator 4955299..4956258 Pseudoalteromonas atlantica T6c 4175910 YP_663675.1 CDS Patl_4122 NC_008228.1 4956359 4957321 R PFAM: PfkB; KEGG: bsu:BG12796 fructokinase; PfkB protein complement(4956359..4957321) Pseudoalteromonas atlantica T6c 4175911 YP_663676.1 CDS Patl_4123 NC_008228.1 4957892 4958506 R PFAM: regulatory protein, TetR; KEGG: son:SO3494 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(4957892..4958506) Pseudoalteromonas atlantica T6c 4175912 YP_663677.1 CDS Patl_4124 NC_008228.1 4958925 4960172 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: son:SO3493 RND multidrug efflux membrane fusion protein MexE; RND family efflux transporter MFP subunit 4958925..4960172 Pseudoalteromonas atlantica T6c 4175913 YP_663678.1 CDS Patl_4125 NC_008228.1 4960184 4963360 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: son:SO3492 RND multidrug efflux transporter MexF; hydrophobe/amphiphile efflux-1 (HAE1) family protein 4960184..4963360 Pseudoalteromonas atlantica T6c 4175914 YP_663679.1 CDS Patl_4126 NC_008228.1 4963353 4964735 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: psp:PSPPH_2271 outer membrane efflux protein; RND efflux system outer membrane lipoprotein 4963353..4964735 Pseudoalteromonas atlantica T6c 4175915 YP_663680.1 CDS Patl_4127 NC_008228.1 4964994 4965539 R PFAM: regulatory protein, TetR; KEGG: bja:blr7984 transcriptional regulatory protein; TetR family transcriptional regulator complement(4964994..4965539) Pseudoalteromonas atlantica T6c 4175916 YP_663681.1 CDS Patl_4128 NC_008228.1 4965941 4966561 D PFAM: glutathione S-transferase-like; KEGG: sce:YLL060C Glutathione S-transferase capable of homodimerization; functional overlap with Gtt2p, Grx1p, and Grx2p; glutathione S-transferase-like protein 4965941..4966561 Pseudoalteromonas atlantica T6c 4175917 YP_663682.1 CDS Patl_4129 NC_008228.1 4966606 4967313 D KEGG: pha:PSHAb0211 hypothetical protein; anti-ECF sigma factor ChrR 4966606..4967313 Pseudoalteromonas atlantica T6c 4175918 YP_663683.1 CDS Patl_4130 NC_008228.1 4967479 4967781 R hypothetical protein complement(4967479..4967781) Pseudoalteromonas atlantica T6c 4175919 YP_663684.1 CDS Patl_4131 NC_008228.1 4968186 4968698 R hypothetical protein complement(4968186..4968698) Pseudoalteromonas atlantica T6c 4175920 YP_663685.1 CDS Patl_4132 NC_008228.1 4968959 4969942 D PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAb0050 hypothetical protein; hypothetical protein 4968959..4969942 Pseudoalteromonas atlantica T6c 4175921 YP_663686.1 CDS Patl_4133 NC_008228.1 4970368 4970934 R PFAM: transport-associated; KEGG: pha:PSHAa0325 hypothetical protein; transport-associated protein complement(4970368..4970934) Pseudoalteromonas atlantica T6c 4175922 YP_663687.1 CDS Patl_4134 NC_008228.1 4971324 4972145 R PFAM: aldo/keto reductase; KEGG: rso:RSc1154 putative reductase oxidoreductase protein; aldo/keto reductase complement(4971324..4972145) Pseudoalteromonas atlantica T6c 4175923 YP_663688.1 CDS Patl_4135 NC_008228.1 4972388 4973743 R KEGG: ana:alr5319 hypothetical protein; hypothetical protein complement(4972388..4973743) Pseudoalteromonas atlantica T6c 4175924 YP_663689.1 CDS Patl_4136 NC_008228.1 4974206 4974400 R KEGG: pha:PSHAa0536 hypothetical protein; hypothetical protein complement(4974206..4974400) Pseudoalteromonas atlantica T6c 4175925 YP_663690.1 CDS Patl_4137 NC_008228.1 4974447 4974623 R PFAM: protein of unknown function DUF1328; KEGG: pha:PSHAa0537 hypothetical protein; hypothetical protein complement(4974447..4974623) Pseudoalteromonas atlantica T6c 4175926 YP_663691.1 CDS Patl_4138 NC_008228.1 4974841 4975818 R KEGG: ilo:IL1677 hypothetical protein; hypothetical protein complement(4974841..4975818) Pseudoalteromonas atlantica T6c 4175927 YP_663692.1 CDS Patl_4139 NC_008228.1 4975880 4977010 R KEGG: pae:PA2708 hypothetical protein; hypothetical protein complement(4975880..4977010) Pseudoalteromonas atlantica T6c 4175928 YP_663693.1 CDS Patl_4140 NC_008228.1 4977132 4977290 R PFAM: protein of unknown function UPF0057; KEGG: dde:Dde_1753 Pmp3 family protein; hypothetical protein complement(4977132..4977290) Pseudoalteromonas atlantica T6c 4175929 YP_663694.1 CDS Patl_4141 NC_008228.1 4977412 4978374 R TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: noc:Noc_1073 ribonuclease BN; putative ribonuclease BN complement(4977412..4978374) Pseudoalteromonas atlantica T6c 4175930 YP_663695.1 CDS Patl_4142 NC_008228.1 4978485 4979639 D PFAM: MscS Mechanosensitive ion channel; KEGG: pha:PSHAa2520 mechanosensitive channel protein; mechanosensitive ion channel protein MscS 4978485..4979639 Pseudoalteromonas atlantica T6c 4175931 YP_663696.1 CDS Patl_4143 NC_008228.1 4979662 4980795 R KEGG: ilo:IL2354 permease of the major facilitator superfamily; major facilitator superfamily permease complement(4979662..4980795) Pseudoalteromonas atlantica T6c 4175932 YP_663697.1 CDS Patl_4144 NC_008228.1 4980914 4982332 R PFAM: Na+/H+ antiporter NhaA; KEGG: tdn:Tmden_1784 Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA complement(4980914..4982332) Pseudoalteromonas atlantica T6c 4175933 YP_663698.1 CDS Patl_4145 NC_008228.1 4982600 4983841 R TIGRFAM: gamma-glutamyl phosphate reductase; KEGG: pha:PSHAa0280 gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase complement(4982600..4983841) Pseudoalteromonas atlantica T6c 4175934 YP_663699.1 CDS Patl_4146 NC_008228.1 4983844 4984950 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(4983844..4984950) Pseudoalteromonas atlantica T6c 4175935 YP_663700.1 CDS Patl_4147 NC_008228.1 4984962 4986455 R TIGRFAM: SSS sodium solute transporter superfamily sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: cps:CPS_3463 proline/sodium symporter; sodium/proline symporter complement(4984962..4986455) Pseudoalteromonas atlantica T6c 4175936 YP_663701.1 CDS Patl_4148 NC_008228.1 4986926 4987471 D PFAM: regulatory protein, MarR; KEGG: cps:CPS_1337 transcriptional regulator, MarR family; MarR family transcriptional regulator 4986926..4987471 Pseudoalteromonas atlantica T6c 4175937 YP_663702.1 CDS Patl_4149 NC_008228.1 4987494 4988066 R KEGG: pha:PSHAb0553 putative lipoprotein; putative lipoprotein complement(4987494..4988066) Pseudoalteromonas atlantica T6c 4175938 YP_663703.1 CDS Patl_4150 NC_008228.1 4988453 4989343 D PFAM: VacJ-like lipoprotein; KEGG: pca:Pcar_0450 surface lipoprotein-like; VacJ-like lipoprotein 4988453..4989343 Pseudoalteromonas atlantica T6c 4175939 YP_663704.1 CDS Patl_4151 NC_008228.1 4989351 4991774 D KEGG: tdn:Tmden_1281 hypothetical protein; hypothetical protein 4989351..4991774 Pseudoalteromonas atlantica T6c 4175940 YP_663705.1 CDS Patl_4152 NC_008228.1 4992428 4994416 R PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: pha:PSHAa2394 two-component sensor histidine kinase and response regulator hybrid; histidine kinase complement(4992428..4994416) Pseudoalteromonas atlantica T6c 4175941 YP_663706.1 CDS Patl_4153 NC_008228.1 4994432 4994890 R PFAM: response regulator receiver; KEGG: pha:PSHAa2395 two-component response regulator; response regulator receiver protein complement(4994432..4994890) Pseudoalteromonas atlantica T6c 4175942 YP_663707.1 CDS Patl_4154 NC_008228.1 4994892 4996373 R PFAM: ATP-binding region, ATPase-like histidine kinase A-like CHASE3; KEGG: pha:PSHAa2396 two-component sensor histidine kinase; multi-sensor signal transduction histidine kinase complement(4994892..4996373) Pseudoalteromonas atlantica T6c 4175943 YP_663708.1 CDS Patl_4155 NC_008228.1 4996426 4996659 R KEGG: pha:PSHAa2397 hypothetical protein; hypothetical protein complement(4996426..4996659) Pseudoalteromonas atlantica T6c 4175944 YP_663709.1 CDS Patl_4156 NC_008228.1 4996663 4997994 R PFAM: response regulator receiver sigma-54 factor, interaction region helix-turn-helix, Fis-type; SMART: ATPase; KEGG: pha:PSHAa2398 sigma-54 interacting response regulator protein; two component sigma-54 specific Fis family transcriptional regulator complement(4996663..4997994) Pseudoalteromonas atlantica T6c 4175945 YP_663710.1 CDS Patl_4157 NC_008228.1 4998397 4999587 R PFAM: GCN5-related N-acetyltransferase; KEGG: pha:PSHAa1378 hypothetical protein; N-acetyltransferase GCN5 complement(4998397..4999587) Pseudoalteromonas atlantica T6c 4175946 YP_663711.1 CDS Patl_4158 NC_008228.1 4999589 5001055 R PFAM: RimK-like ATP-grasp; KEGG: pha:PSHAa1377 hypothetical protein; RimK-like ATP-grasp complement(4999589..5001055) Pseudoalteromonas atlantica T6c 4175947 YP_663712.1 CDS Patl_4159 NC_008228.1 5001319 5002953 R PFAM: beta-lactamase; KEGG: xcv:XCV2967 beta-lactamase precursor; beta-lactamase complement(5001319..5002953) Pseudoalteromonas atlantica T6c 4175948 YP_663713.1 CDS Patl_4160 NC_008228.1 5003054 5005510 R PFAM: beta-lactamase Peptidoglycan-binding domain 1 N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: pha:PSHAa0522 hypothetical protein; hypothetical protein complement(5003054..5005510) Pseudoalteromonas atlantica T6c 4175949 YP_663714.1 CDS Patl_4161 NC_008228.1 5006000 5009026 D KEGG: ilo:IL2339 outer membrane protein; hypothetical protein 5006000..5009026 Pseudoalteromonas atlantica T6c 4175950 YP_663715.1 CDS Patl_4162 NC_008228.1 5009172 5011073 D PFAM: glycoside hydrolase, family 3-like; KEGG: pha:PSHAb0065 beta-hexosaminidase A precursor (N-acetyl-beta-glucosaminidase) (beta-N-acetylhexosaminidase) (Chitobiase); glycoside hydrolase 5009172..5011073 Pseudoalteromonas atlantica T6c 4175951 YP_663716.1 CDS Patl_4163 NC_008228.1 5011197 5011598 D PFAM: NUDIX hydrolase; KEGG: son:SO0464 MutT/nudix family protein; NUDIX hydrolase 5011197..5011598 Pseudoalteromonas atlantica T6c 4175952 YP_663717.1 CDS Patl_4164 NC_008228.1 5011843 5012691 D PFAM: helix-turn-helix protein RpiR sugar isomerase (SIS); KEGG: yps:YPTB2884 putative RpiR-family transcriptional regulatory protein; RpiR family transcriptional regulator 5011843..5012691 Pseudoalteromonas atlantica T6c 4175953 YP_663718.1 CDS Patl_4165 NC_008228.1 5013050 5015893 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: xcv:XCV2894 TonB-dependent outer membrane receptor; TonB-dependent receptor 5013050..5015893 Pseudoalteromonas atlantica T6c 4175954 YP_663719.1 CDS Patl_4166 NC_008228.1 5016066 5016584 R hypothetical protein complement(5016066..5016584) Pseudoalteromonas atlantica T6c 4175955 YP_663720.1 CDS Patl_4167 NC_008228.1 5016747 5017922 R PFAM: Uncharacterised conserved protein UCP016719; KEGG: pha:PSHAa0521 hypothetical protein; hypothetical protein complement(5016747..5017922) Pseudoalteromonas atlantica T6c 4175956 YP_663721.1 CDS murQ NC_008228.1 5017919 5018842 R catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase complement(5017919..5018842) Pseudoalteromonas atlantica T6c 4175957 YP_663722.1 CDS Patl_4169 NC_008228.1 5018860 5019747 R PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: cvi:CV2896 probable N-acetylglucosamine kinase; BadF/BadG/BcrA/BcrD type ATPase complement(5018860..5019747) Pseudoalteromonas atlantica T6c 4175958 YP_663723.1 CDS Patl_4170 NC_008228.1 5019744 5021324 R PFAM: Na+/solute symporter; KEGG: tdn:Tmden_2070 Na+/solute symporter; Na+/solute symporter complement(5019744..5021324) Pseudoalteromonas atlantica T6c 4175959 YP_663724.1 CDS Patl_4171 NC_008228.1 5021331 5022743 R PFAM: NLP/P60; KEGG: xcb:XC_3878 hypothetical protein; NLP/P60 complement(5021331..5022743) Pseudoalteromonas atlantica T6c 4175960 YP_663725.1 CDS Patl_4172 NC_008228.1 5022756 5023922 R PFAM: protein of unknown function DUF819; KEGG: bha:BH3005 hypothetical protein; hypothetical protein complement(5022756..5023922) Pseudoalteromonas atlantica T6c 4175961 YP_663726.1 CDS Patl_4173 NC_008228.1 5024078 5025061 D PFAM: sugar isomerase (SIS); KEGG: son:SO3506 glucosamine-6-phosphate isomerase; glutamine-fructose-6-phosphate transaminase 5024078..5025061 Pseudoalteromonas atlantica T6c 4175962 YP_663727.1 CDS Patl_4174 NC_008228.1 5025063 5026193 D KEGG: son:SO3505 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase 5025063..5026193 Pseudoalteromonas atlantica T6c 4175963 YP_663728.1 CDS Patl_4175 NC_008228.1 5026210 5027550 D TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: tdn:Tmden_2077 glucose/galactose transporter; glucose/galactose transporter 5026210..5027550 Pseudoalteromonas atlantica T6c 4175964 YP_663729.1 CDS Patl_4176 NC_008228.1 5027603 5028676 R PFAM: peptidase U61, LD-carboxypeptidase A; KEGG: ava:Ava_4926 twin-arginine translocation pathway signal; peptidase U61, LD-carboxypeptidase A complement(5027603..5028676) Pseudoalteromonas atlantica T6c 4175965 YP_663730.1 CDS Patl_4177 NC_008228.1 5028969 5030012 D TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein response regulator receiver; KEGG: tdn:Tmden_0218 diguanylate cyclase (GGDEF domain); diguanylate cyclase 5028969..5030012 Pseudoalteromonas atlantica T6c 4175966 YP_663731.1 CDS Patl_4178 NC_008228.1 5030240 5031346 R PFAM: filamentation induced by cAMP protein Fic; KEGG: fra:Francci3_0673 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic complement(5030240..5031346) Pseudoalteromonas atlantica T6c 4175967 YP_663732.1 CDS Patl_4179 NC_008228.1 5031398 5033572 R hypothetical protein complement(5031398..5033572) Pseudoalteromonas atlantica T6c 4175968 YP_663733.1 CDS Patl_4180 NC_008228.1 5033969 5035573 R PFAM: ABC transporter related; SMART: ATPase; KEGG: son:SO2525 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(5033969..5035573) Pseudoalteromonas atlantica T6c 4175969 YP_663734.1 CDS Patl_4181 NC_008228.1 5035787 5037283 R PFAM: chemotaxis sensory transducer; KEGG: pha:PSHAb0277 putative methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(5035787..5037283) Pseudoalteromonas atlantica T6c 4175970 YP_663735.1 CDS Patl_4182 NC_008228.1 5037510 5038070 R KEGG: ilo:IL1545 secreted protein, containing thioredoxin-like domain; hypothetical protein complement(5037510..5038070) Pseudoalteromonas atlantica T6c 4175971 YP_663736.1 CDS Patl_4183 NC_008228.1 5038143 5039588 R PFAM: chemotaxis sensory transducer; KEGG: pha:PSHAb0277 putative methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(5038143..5039588) Pseudoalteromonas atlantica T6c 4175972 YP_663737.1 CDS Patl_4184 NC_008228.1 5039777 5040862 R KEGG: bja:bll1370 hypothetical protein; hypothetical protein complement(5039777..5040862) Pseudoalteromonas atlantica T6c 4175973 YP_663738.1 CDS Patl_4185 NC_008228.1 5040864 5042282 R KEGG: mbo:Mb2023 hypothetical protein; hypothetical protein complement(5040864..5042282) Pseudoalteromonas atlantica T6c 4175974 YP_663739.1 CDS Patl_4186 NC_008228.1 5042438 5043025 D PFAM: regulatory protein, TetR; KEGG: pfl:PFL_2966 transcriptional regulator, TetR family; TetR family transcriptional regulator 5042438..5043025 Pseudoalteromonas atlantica T6c 4175975 YP_663740.1 CDS Patl_4187 NC_008228.1 5043102 5044349 R PFAM: malic enzyme-like malic enzyme, NAD-binding; KEGG: ilo:IL2463 NADP-dependent malic enzyme; malate dehydrogenase complement(5043102..5044349) Pseudoalteromonas atlantica T6c 4175976 YP_663741.1 CDS Patl_4188 NC_008228.1 5044957 5045172 R PFAM: ribosomal protein L31; KEGG: pmu:PM1142 50S ribosomal protein L31; 50S ribosomal protein L31 complement(5044957..5045172) Pseudoalteromonas atlantica T6c 4175977 YP_663742.1 CDS Patl_4189 NC_008228.1 5045398 5047575 D TIGRFAM: primosomal protein N'; PFAM: helicase-like type III restriction enzyme, res subunit DEAD/DEAH box helicase-like; KEGG: ppr:PBPRA0257 primosomal protein N'; primosomal protein N' 5045398..5047575 Pseudoalteromonas atlantica T6c 4175978 YP_663743.1 CDS Patl_4190 NC_008228.1 5047707 5048237 D PFAM: Sporulation related; KEGG: vfi:VF2276 cell division protein FtsN; sporulation-like protein 5047707..5048237 Pseudoalteromonas atlantica T6c 4175979 YP_663744.1 CDS Patl_4191 NC_008228.1 5048444 5048968 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 5048444..5048968 Pseudoalteromonas atlantica T6c 4175980 YP_663745.1 CDS hslU NC_008228.1 5049047 5050378 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 5049047..5050378 Pseudoalteromonas atlantica T6c 4175981 YP_663746.1 CDS Patl_4193 NC_008228.1 5050495 5051628 R PFAM: beta-lactamase; KEGG: sma:SAV1304 putative esterase; beta-lactamase complement(5050495..5051628) Pseudoalteromonas atlantica T6c 4175982 YP_663747.1 CDS Patl_4194 NC_008228.1 5052256 5053299 R KEGG: tcx:Tcr_0271 hypothetical protein; hypothetical protein complement(5052256..5053299) Pseudoalteromonas atlantica T6c 4175983 YP_663748.1 CDS Patl_4195 NC_008228.1 5053327 5053779 R KEGG: pae:PA2779 hypothetical protein; hypothetical protein complement(5053327..5053779) Pseudoalteromonas atlantica T6c 4175984 YP_663749.1 CDS Patl_4196 NC_008228.1 5053989 5054498 R hypothetical protein complement(5053989..5054498) Pseudoalteromonas atlantica T6c 4175985 YP_663750.1 CDS Patl_4197 NC_008228.1 5054612 5055817 R PFAM: Na+/H+ antiporter NhaA; KEGG: pfo:Pfl_1234 Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA complement(5054612..5055817) Pseudoalteromonas atlantica T6c 4175986 YP_663751.1 CDS Patl_4198 NC_008228.1 5055940 5056827 D PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: psb:Psyr_2422 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 5055940..5056827 Pseudoalteromonas atlantica T6c 4175987 YP_663752.1 CDS Patl_4199 NC_008228.1 5057098 5058477 D PFAM: SH3, type 3; SMART: SH3-like region; KEGG: btk:BT9727_1787 NLP/P60 family protein; hypothetical protein 5057098..5058477 Pseudoalteromonas atlantica T6c 4175988 YP_663753.1 CDS Patl_4200 NC_008228.1 5058525 5058956 D KEGG: hch:HCH_04563 hypothetical protein; hypothetical protein 5058525..5058956 Pseudoalteromonas atlantica T6c 4175989 YP_663754.1 CDS Patl_4201 NC_008228.1 5059420 5061594 D PFAM: glutamine synthetase, catalytic region; KEGG: syn:slr0288 glutamate-ammonia ligase, glutamine synthetase type III; glutamine synthetase 5059420..5061594 Pseudoalteromonas atlantica T6c 4175990 YP_663755.1 CDS Patl_4202 NC_008228.1 5061692 5062375 D KEGG: pha:PSHAa1373 hypothetical protein; hypothetical protein 5061692..5062375 Pseudoalteromonas atlantica T6c 4175991 YP_663756.1 CDS secD NC_008228.1 5062544 5064370 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 5062544..5064370 Pseudoalteromonas atlantica T6c 4175992 YP_663757.1 CDS secF NC_008228.1 5064367 5065353 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 5064367..5065353 Pseudoalteromonas atlantica T6c 4175993 YP_663758.1 CDS Patl_4205 NC_008228.1 5065467 5066267 R PFAM: protein of unknown function DUF155; KEGG: wsu:WS1725 hypothetical protein; hypothetical protein complement(5065467..5066267) Pseudoalteromonas atlantica T6c 4175994 YP_663759.1 CDS Patl_4206 NC_008228.1 5066595 5067944 R TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: vfi:VF2489 glutathione reductase; glutathione-disulfide reductase complement(5066595..5067944) Pseudoalteromonas atlantica T6c 4175995 YP_663760.1 CDS Patl_4207 NC_008228.1 5068212 5070254 D PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: vpa:VP0070 oligopeptidase A; oligopeptidase A 5068212..5070254 Pseudoalteromonas atlantica T6c 4175996 YP_663761.1 CDS Patl_4208 NC_008228.1 5070285 5070992 D KEGG: pha:PSHAa0181 hypothetical protein; hypothetical protein 5070285..5070992 Pseudoalteromonas atlantica T6c 4175997 YP_663762.1 CDS Patl_4209 NC_008228.1 5071138 5071938 D TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: yps:YPTB0255 ubiquinone/menaquinone biosynthesis methyltransferase; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase LpxD 5071138..5071938 Pseudoalteromonas atlantica T6c 4175998 YP_663763.1 CDS Patl_4210 NC_008228.1 5071939 5072580 D PFAM: protein of unknown function DUF1243; KEGG: ppr:PBPRA0117 conserved hypothetical protein; hypothetical protein 5071939..5072580 Pseudoalteromonas atlantica T6c 4175999 YP_663764.1 CDS Patl_4211 NC_008228.1 5072584 5074218 D TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1; KEGG: pha:PSHAa2928 2-octaprenylphenol hydroxylase; ubiquinone biosynthesis; 2-polyprenylphenol 6-hydroxylase 5072584..5074218 Pseudoalteromonas atlantica T6c 4176000 YP_663765.1 CDS Patl_4212 NC_008228.1 5074281 5075201 R KEGG: cps:CPS_1665 hypothetical protein; hypothetical protein complement(5074281..5075201) Pseudoalteromonas atlantica T6c 4176001 YP_663766.1 CDS Patl_4213 NC_008228.1 5075347 5075601 D TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: hit:NTHI0279 sec-independent protein translocase protein TatA/E; twin arginine-targeting protein translocase 5075347..5075601 Pseudoalteromonas atlantica T6c 4176002 YP_663767.1 CDS Patl_4214 NC_008228.1 5075616 5075915 D TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: ppr:PBPRA0120 sec-independent protein translocase protein TatB; twin-arginine translocation protein subunit TatB 5075616..5075915 Pseudoalteromonas atlantica T6c 4176003 YP_663768.1 CDS Patl_4215 NC_008228.1 5075922 5076731 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: cps:CPS_0165 Sec-independent periplasmic protein translocation protein TatC; Sec-independent protein translocase subunit TatC 5075922..5076731 Pseudoalteromonas atlantica T6c 4176004 YP_663769.1 CDS Patl_4216 NC_008228.1 5076728 5077312 D KEGG: son:SO4205 hypothetical protein; hypothetical protein 5076728..5077312 Pseudoalteromonas atlantica T6c 4176005 YP_663770.1 CDS Patl_4217 NC_008228.1 5077314 5078102 D PFAM: TatD-related deoxyribonuclease; KEGG: ilo:IL2367 Mg-dependent DNase; TatD-related deoxyribonuclease 5077314..5078102 Pseudoalteromonas atlantica T6c 4176006 YP_663771.1 CDS Patl_4218 NC_008228.1 5078106 5080001 D TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein Diverse 7TM receptor, transmembrane region; KEGG: son:SO4207 GGDEF domain protein; diguanylate cyclase 5078106..5080001 Pseudoalteromonas atlantica T6c 4176007 YP_663772.1 CDS Patl_4219 NC_008228.1 5080051 5081052 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 5080051..5081052 Pseudoalteromonas atlantica T6c 4176008 YP_663773.1 CDS Patl_4220 NC_008228.1 5081249 5082760 R PFAM: Ppx/GppA phosphatase; KEGG: pha:PSHAa0115 guanosine pentaphosphate phosphohydrolase; Ppx/GppA phosphatase complement(5081249..5082760) Pseudoalteromonas atlantica T6c 4176009 YP_663774.1 CDS Patl_4221 NC_008228.1 5082757 5084022 R enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB complement(5082757..5084022) Pseudoalteromonas atlantica T6c 4176010 YP_663775.1 CDS Patl_4222 NC_008228.1 5084124 5084450 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: vpa:VP3001 thioredoxin; thioredoxin 5084124..5084450 Pseudoalteromonas atlantica T6c 4176011 YP_663776.1 CDS rho NC_008228.1 5084682 5085983 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 5084682..5085983 Pseudoalteromonas atlantica T6c 4176012 YP_663777.1 CDS Patl_4224 NC_008228.1 5086259 5086750 D KEGG: vvy:VV3218 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 5086259..5086750 Pseudoalteromonas atlantica T6c 4176013 YP_663778.1 CDS Patl_4225 NC_008228.1 5086747 5087889 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 5086747..5087889 Pseudoalteromonas atlantica T6c 4176014 YP_663779.1 CDS Patl_4226 NC_008228.1 5088632 5090959 D PFAM: RNA binding S1; SMART: Resolvase, RNase H-like fold; KEGG: pha:PSHAa2854 conserved protein with nucleic acid-binding protein-like domain (transcriptional accessory protein); RNA binding S1 5088632..5090959 Pseudoalteromonas atlantica T6c 4176016 YP_663780.1 CDS Patl_4227 NC_008228.1 5091166 5091606 D KEGG: son:SO2799 lipoprotein, putative; putative lipoprotein 5091166..5091606 Pseudoalteromonas atlantica T6c 4176017 YP_663781.1 CDS Patl_4228 NC_008228.1 5091678 5092679 R KEGG: pha:PSHAa2855 hypothetical protein; hypothetical protein complement(5091678..5092679) Pseudoalteromonas atlantica T6c 4176018 YP_663782.1 CDS Patl_4229 NC_008228.1 5092714 5092977 R KEGG: ilo:IL0279 hypothetical protein; hypothetical protein complement(5092714..5092977) Pseudoalteromonas atlantica T6c 4176019 YP_663783.1 CDS Patl_4230 NC_008228.1 5093046 5093822 R TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; KEGG: vpa:VP0148 BioH protein; bioH protein complement(5093046..5093822) Pseudoalteromonas atlantica T6c 4176020 YP_663784.1 CDS Patl_4231 NC_008228.1 5093883 5094605 D KEGG: ssn:SSO_3544 hypothetical protein; amidophosphoribosyltransferases-like protein 5093883..5094605 Pseudoalteromonas atlantica T6c 4176021 YP_663785.1 CDS Patl_4232 NC_008228.1 5094589 5097147 R SMART: Peptidase M14, carboxypeptidase A; KEGG: pha:PSHAa2859 hypothetical protein; peptidase M14, carboxypeptidase A complement(5094589..5097147) Pseudoalteromonas atlantica T6c 4176022 YP_663786.1 CDS Patl_4233 NC_008228.1 5097307 5097885 D cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein 5097307..5097885 Pseudoalteromonas atlantica T6c 4176023 YP_663787.1 CDS Patl_4234 NC_008228.1 5098121 5099464 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: ppr:PBPRA0175 putative DNA-damage-inducible protein F; MATE efflux family protein complement(5098121..5099464) Pseudoalteromonas atlantica T6c 4176024 YP_663788.1 CDS Patl_4235 NC_008228.1 5099579 5100628 D PFAM: polysaccharide deacetylase; KEGG: ilo:IL0251 polysaccharide deacetylase family protein; polysaccharide deacetylase 5099579..5100628 Pseudoalteromonas atlantica T6c 4176025 YP_663789.1 CDS Patl_4236 NC_008228.1 5100625 5101242 R PFAM: GCN5-related N-acetyltransferase; KEGG: tte:TTE0581 acetyltransferase; N-acetyltransferase GCN5 complement(5100625..5101242) Pseudoalteromonas atlantica T6c 4176026 YP_663790.1 CDS Patl_4237 NC_008228.1 5101245 5101883 R PFAM: electron transport protein SCO1/SenC; KEGG: pha:PSHAa2864 SCO1/SenC protein (copper-binding protein); electron transport protein SCO1/SenC complement(5101245..5101883) Pseudoalteromonas atlantica T6c 4176027 YP_663791.1 CDS Patl_4238 NC_008228.1 5101880 5102797 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(5101880..5102797) Pseudoalteromonas atlantica T6c 4176028 YP_663792.1 CDS Patl_4239 NC_008228.1 5102807 5103784 R PFAM: cytochrome oxidase assembly; KEGG: ilo:IL0254 uncharacterized protein required for cytochrome oxidase assembly; cytochrome oxidase assembly complement(5102807..5103784) Pseudoalteromonas atlantica T6c 4176029 YP_663793.1 CDS Patl_4240 NC_008228.1 5103795 5104355 R KEGG: ppr:PBPRA0172 conserved hypothetical protein; hypothetical protein complement(5103795..5104355) Pseudoalteromonas atlantica T6c 4176030 YP_663794.1 CDS Patl_4241 NC_008228.1 5104339 5105079 R KEGG: cps:CPS_0232 hypothetical protein; hypothetical protein complement(5104339..5105079) Pseudoalteromonas atlantica T6c 4176031 YP_663795.1 CDS Patl_4242 NC_008228.1 5105122 5105331 D KEGG: vpa:VPA0541 hypothetical protein; hypothetical protein 5105122..5105331 Pseudoalteromonas atlantica T6c 4176032 YP_663796.1 CDS Patl_4243 NC_008228.1 5105393 5106274 R PFAM: cytochrome c oxidase, subunit III; KEGG: ilo:IL0257 cytochrome c oxidase subunit III; cytochrome c oxidase subunit III complement(5105393..5106274) Pseudoalteromonas atlantica T6c 4176033 YP_663797.1 CDS Patl_4244 NC_008228.1 5106286 5106888 R involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein complement(5106286..5106888) Pseudoalteromonas atlantica T6c 4176034 YP_663798.1 CDS Patl_4245 NC_008228.1 5107131 5108729 R PFAM: cytochrome c oxidase, subunit I; KEGG: son:SO4607 cytochrome c oxidase, subunit I; cytochrome-c oxidase complement(5107131..5108729) Pseudoalteromonas atlantica T6c 4176035 YP_663799.1 CDS Patl_4246 NC_008228.1 5108740 5109894 R PFAM: cytochrome c oxidase, subunit II cytochrome c, class I cytochrome C oxidase subunit II, transmembrane region; KEGG: ilo:IL0260 cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II complement(5108740..5109894) Pseudoalteromonas atlantica T6c 4176036 YP_663800.1 CDS Patl_4247 NC_008228.1 5110273 5110896 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(5110273..5110896) Pseudoalteromonas atlantica T6c 4176037 YP_663801.1 CDS Patl_4248 NC_008228.1 5111090 5113525 D PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO4602 glycerol-3-phosphate acyltransferase; glycerol-3-phosphate O-acyltransferase 5111090..5113525 Pseudoalteromonas atlantica T6c 4176038 YP_663802.1 CDS Patl_4249 NC_008228.1 5113618 5115168 R TIGRFAM: threonine dehydratase, biosynthetic; PFAM: Threonine dehydratase-like Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: vfi:VF2560 threonine dehydratase; threonine dehydratase, biosynthetic complement(5113618..5115168) Pseudoalteromonas atlantica T6c 4176039 YP_663803.1 CDS Patl_4250 NC_008228.1 5115168 5117015 R KEGG: son:SO4345 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxy-acid dehydratase complement(5115168..5117015) Pseudoalteromonas atlantica T6c 4176040 YP_663804.1 CDS Patl_4251 NC_008228.1 5117465 5118085 D PFAM: protein of unknown function UPF0126; KEGG: ilo:IL2151 hypothetical protein; hypothetical protein 5117465..5118085 Pseudoalteromonas atlantica T6c 4176041 YP_663805.1 CDS Patl_4252 NC_008228.1 5118147 5119697 D KEGG: cps:CPS_4841 competence protein ComM; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit ATPase associated with various cellular activities, AAA_5; SMART: ATPase; Mg chelatase subunit ChlI 5118147..5119697 Pseudoalteromonas atlantica T6c 4176042 YP_663806.1 CDS Patl_4253 NC_008228.1 5119825 5121051 D PFAM: PepSY-associated TM helix; KEGG: ccr:CC1782 hypothetical protein; PepSY-associated TM helix-containing protein 5119825..5121051 Pseudoalteromonas atlantica T6c 4176043 YP_663807.1 CDS Patl_4254 NC_008228.1 5121048 5121902 R participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY complement(5121048..5121902) Pseudoalteromonas atlantica T6c 4176044 YP_663808.1 CDS Patl_4255 NC_008228.1 5122047 5123531 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 5122047..5123531 Pseudoalteromonas atlantica T6c 4176045 YP_663809.1 CDS Patl_4256 NC_008228.1 5124087 5124419 D KEGG: cps:CPS_1368 hypothetical protein; hypothetical protein 5124087..5124419 Pseudoalteromonas atlantica T6c 4176046 YP_663810.1 CDS Patl_4257 NC_008228.1 5124576 5125223 R PFAM: OmpA/MotB 17 kDa surface antigen; KEGG: ilo:IL1565 outer membrane protein and related peptidoglycan-associated (LipO)proteins; OmpA/MotB protein complement(5124576..5125223) Pseudoalteromonas atlantica T6c 4176047 YP_663811.1 CDS Patl_4258 NC_008228.1 5125422 5126654 R TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rba:RB11273 bicyclomycin resistance protein; Bcr/CflA subfamily drug resistance transporter complement(5125422..5126654) Pseudoalteromonas atlantica T6c 4176048 YP_663812.1 CDS Patl_4259 NC_008228.1 5126826 5127365 R PFAM: Phosphoglycerate mutase; KEGG: ilo:IL1582 broad specificity phosphatase, PhoE-like; phosphoglycerate mutase complement(5126826..5127365) Pseudoalteromonas atlantica T6c 4176049 YP_663813.1 CDS Patl_4260 NC_008228.1 5127365 5127955 R PFAM: carbonic anhydrase; KEGG: son:SO2474 carbonic anhydrase family protein; carbonate dehydratase complement(5127365..5127955) Pseudoalteromonas atlantica T6c 4176050 YP_663814.1 CDS Patl_4261 NC_008228.1 5127952 5128848 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: cps:CPS_4613 membrane protein; hypothetical protein complement(5127952..5128848) Pseudoalteromonas atlantica T6c 4176051 YP_663815.1 CDS Patl_4262 NC_008228.1 5128922 5130385 D PFAM: peptidase M20 peptidase dimerisation; KEGG: rpa:RPA0412 hypothetical protein; hypothetical protein 5128922..5130385 Pseudoalteromonas atlantica T6c 4176052 YP_663816.1 CDS Patl_4263 NC_008228.1 5130415 5132310 R KEGG: pha:PSHAa0702 hypothetical protein ; membrane protein; hypothetical protein complement(5130415..5132310) Pseudoalteromonas atlantica T6c 4176053 YP_663817.1 CDS Patl_4264 NC_008228.1 5132552 5133040 R PFAM: Invasion associated locus B; KEGG: bja:bll3901 hypothetical protein; invasion associated locus B complement(5132552..5133040) Pseudoalteromonas atlantica T6c 4176054 YP_663818.1 CDS Patl_4265 NC_008228.1 5133104 5134528 R PFAM: Nidogen, extracellular region; KEGG: cch:Cag_1897 nidogen, extracellular region; Nidogen, extracellular region complement(5133104..5134528) Pseudoalteromonas atlantica T6c 4176055 YP_663819.1 CDS Patl_4266 NC_008228.1 5134771 5135976 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pha:PSHAb0118 respiratory NADH dehydrogenase II; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(5134771..5135976) Pseudoalteromonas atlantica T6c 4176056 YP_663820.1 CDS Patl_4267 NC_008228.1 5136020 5136478 R hypothetical protein complement(5136020..5136478) Pseudoalteromonas atlantica T6c 4176057 YP_663821.1 CDS proA NC_008228.1 5136552 5137802 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(5136552..5137802) Pseudoalteromonas atlantica T6c 4176058 YP_663822.1 CDS Patl_4269 NC_008228.1 5137851 5138948 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(5137851..5138948) Pseudoalteromonas atlantica T6c 4176059 YP_663823.1 CDS Patl_4270 NC_008228.1 5139250 5141700 D KEGG: pha:PSHAb0057 putative Zn-dependent aminopeptidase; putative Zn-dependent aminopeptidase 5139250..5141700 Pseudoalteromonas atlantica T6c 4176060 YP_663824.1 CDS Patl_4271 NC_008228.1 5141703 5142209 D KEGG: pha:PSHAb0058 putative orphan protein; hypothetical protein 5141703..5142209 Pseudoalteromonas atlantica T6c 4176061 YP_663825.1 CDS Patl_4272 NC_008228.1 5142333 5143457 D PFAM: protein of unknown function UPF0118; KEGG: vpa:VP0091 putative permease protein; hypothetical protein 5142333..5143457 Pseudoalteromonas atlantica T6c 4176062 YP_663826.1 CDS Patl_4273 NC_008228.1 5143672 5144010 R hypothetical protein complement(5143672..5144010) Pseudoalteromonas atlantica T6c 4176063 YP_663827.1 CDS Patl_4274 NC_008228.1 5144067 5145305 R KEGG: pfo:Pfl_5467 hypothetical protein; hypothetical protein complement(5144067..5145305) Pseudoalteromonas atlantica T6c 4176064 YP_663828.1 CDS Patl_4275 NC_008228.1 5145666 5146505 D KEGG: ilo:IL2145 hypothetical protein; hypothetical protein 5145666..5146505 Pseudoalteromonas atlantica T6c 4176065 YP_663829.1 CDS Patl_4276 NC_008228.1 5146518 5147042 D PFAM: protein of unknown function DUF1285; KEGG: pfl:PFL_1807 hypothetical protein; hypothetical protein 5146518..5147042 Pseudoalteromonas atlantica T6c 4176066 YP_663830.1 CDS Patl_4277 NC_008228.1 5147213 5148508 D PFAM: amidohydrolase Amidohydrolase 3; KEGG: ilo:IL2390 Xaa-Pro dipeptidase family enzyme; amidohydrolase 5147213..5148508 Pseudoalteromonas atlantica T6c 4176067 YP_663831.1 CDS Patl_4278 NC_008228.1 5148626 5149390 D KEGG: pha:PSHAa0344 hypothetical protein; hypothetical protein 5148626..5149390 Pseudoalteromonas atlantica T6c 4176068 YP_663832.1 CDS Patl_4279 NC_008228.1 5149569 5150021 D KEGG: hch:HCH_03971 hypothetical protein; hypothetical protein 5149569..5150021 Pseudoalteromonas atlantica T6c 4176069 YP_663833.1 CDS Patl_4280 NC_008228.1 5150279 5150530 R PFAM: SirA-like; KEGG: pha:PSHAa0009 small ubiquitous RNA-binding protein; hypothetical protein complement(5150279..5150530) Pseudoalteromonas atlantica T6c 4176070 YP_663834.1 CDS pyrE NC_008228.1 5150532 5151185 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(5150532..5151185) Pseudoalteromonas atlantica T6c 4176071 YP_663835.1 CDS rph NC_008228.1 5151224 5151937 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(5151224..5151937) Pseudoalteromonas atlantica T6c 4176072 YP_663836.1 CDS Patl_4283 NC_008228.1 5152108 5152980 D TIGRFAM: conserved hypothetical protein; PFAM: YicC-like-like Domain of unknown function DUF1732; KEGG: cps:CPS_0107 conserved hypothetical protein TIGR00255; hypothetical protein 5152108..5152980 Pseudoalteromonas atlantica T6c 4176073 YP_663837.1 CDS Patl_4284 NC_008228.1 5153025 5153366 D KEGG: rba:RB3703 probable transcriptional regulator; hypothetical protein 5153025..5153366 Pseudoalteromonas atlantica T6c 4176074 YP_663838.1 CDS Patl_4285 NC_008228.1 5154012 5155178 R KEGG: pha:PSHAa2265 metal-dependent phosphohydrolase domain; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase complement(5154012..5155178) Pseudoalteromonas atlantica T6c 4176075 YP_663839.1 CDS Patl_4286 NC_008228.1 5155545 5158586 D PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3737 TonB-dependent receptor; TonB-dependent receptor 5155545..5158586 Pseudoalteromonas atlantica T6c 4176076 YP_663840.1 CDS Patl_4287 NC_008228.1 5158750 5159484 D PFAM: SapC; KEGG: cps:CPS_3736 hypothetical protein; protein SapC protein 5158750..5159484 Pseudoalteromonas atlantica T6c 4176077 YP_663841.1 CDS Patl_4288 NC_008228.1 5159500 5160531 D SMART: Transcription factor jumonji/aspartyl beta-hydroxylase; KEGG: xcb:XC_4055 Pass1-related protein; transcription factor jumonji/aspartyl beta-hydroxylase 5159500..5160531 Pseudoalteromonas atlantica T6c 4176078 YP_663842.1 CDS Patl_4289 NC_008228.1 5160559 5162037 D PFAM: tryptophan halogenase; KEGG: cps:CPS_3734 putative tryptophan halogenase; tryptophan halogenase 5160559..5162037 Pseudoalteromonas atlantica T6c 4176079 YP_663843.1 CDS Patl_4290 NC_008228.1 5162053 5162778 D KEGG: cps:CPS_0241 hypothetical protein; hypothetical protein 5162053..5162778 Pseudoalteromonas atlantica T6c 4176080 YP_663844.1 CDS Patl_4291 NC_008228.1 5162805 5163149 R TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: cps:CPS_3583 putative methylated-DNA binding protein; methylated-DNA--protein-cysteine methyltransferase complement(5162805..5163149) Pseudoalteromonas atlantica T6c 4176081 YP_663845.1 CDS Patl_4292 NC_008228.1 5163529 5164119 D PFAM: DTW domain containing protein; KEGG: son:SO4554 hypothetical protein; DTW domain-containing protein 5163529..5164119 Pseudoalteromonas atlantica T6c 4176082 YP_663846.1 CDS Patl_4293 NC_008228.1 5164343 5167378 D PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt Diverse 7TM receptor, transmembrane region; KEGG: cps:CPS_4481 sensor histidine kinase/response regulator; multi-sensor hybrid histidine kinase 5164343..5167378 Pseudoalteromonas atlantica T6c 4176083 YP_663847.1 CDS atpC NC_008228.1 5167459 5167872 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(5167459..5167872) Pseudoalteromonas atlantica T6c 4176084 YP_663848.1 CDS Patl_4295 NC_008228.1 5167916 5169301 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(5167916..5169301) Pseudoalteromonas atlantica T6c 4176085 YP_663849.1 CDS Patl_4296 NC_008228.1 5169333 5170193 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(5169333..5170193) Pseudoalteromonas atlantica T6c 4176086 YP_663850.1 CDS Patl_4297 NC_008228.1 5170249 5171790 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(5170249..5171790) Pseudoalteromonas atlantica T6c 4176087 YP_663851.1 CDS Patl_4298 NC_008228.1 5171804 5172337 R TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+-transporting two-sector ATPase, delta (OSCP) subunit; KEGG: son:SO4750 ATP synthase F1, delta subunit; ATP synthase F1 subunit delta complement(5171804..5172337) Pseudoalteromonas atlantica T6c 4176088 YP_663852.1 CDS Patl_4299 NC_008228.1 5172352 5172822 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(5172352..5172822) Pseudoalteromonas atlantica T6c 4176089 YP_663853.1 CDS Patl_4300 NC_008228.1 5172862 5173110 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(5172862..5173110) Pseudoalteromonas atlantica T6c 4176090 YP_663854.1 CDS Patl_4301 NC_008228.1 5173164 5173976 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(5173164..5173976) Pseudoalteromonas atlantica T6c 4176091 YP_663855.1 CDS Patl_4302 NC_008228.1 5174025 5174411 R PFAM: ATP synthase I chain; KEGG: vch:VC2771 ATP synthase protein I; ATP synthase I chain complement(5174025..5174411) Pseudoalteromonas atlantica T6c 4176092 YP_663856.1 CDS Patl_4303 NC_008228.1 5174513 5175385 R TIGRFAM: parB-like partition proteins; PFAM: ParB-like nuclease; KEGG: pha:PSHAa3016 partitioning protein B; parB-like partition proteins complement(5174513..5175385) Pseudoalteromonas atlantica T6c 4176093 YP_663857.1 CDS Patl_4304 NC_008228.1 5175419 5176255 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO4756 ParA family protein; cobyrinic acid a,c-diamide synthase complement(5175419..5176255) Pseudoalteromonas atlantica T6c 4176094 YP_663858.1 CDS Patl_4305 NC_008228.1 5176319 5176957 R TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: ppr:PBPRA3614 putative glucose inhibited division protein B; methyltransferase GidB complement(5176319..5176957) Pseudoalteromonas atlantica T6c 4176095 YP_663859.1 CDS Patl_4306 NC_008228.1 5176957 5178858 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(5176957..5178858) Pseudoalteromonas atlantica T6c 4176096 YP_663860.1 CDS Patl_4307 NC_008228.1 5179915 5180730 R KEGG: ppu:PP1552 phage replication protein, putative; hypothetical protein complement(5179915..5180730) Pseudoalteromonas atlantica T6c 4176097 YP_663861.1 CDS Patl_4308 NC_008228.1 5180750 5181424 R hypothetical protein complement(5180750..5181424) Pseudoalteromonas atlantica T6c 4176098 YP_663862.1 CDS Patl_4309 NC_008228.1 5181428 5181865 R PFAM: flavodoxin/nitric oxide synthase; KEGG: sdy:SDY_4006 initiation of chromosome replication; flavodoxin/nitric oxide synthase complement(5181428..5181865) Pseudoalteromonas atlantica T6c 4176099 YP_663863.1 CDS trmE NC_008228.1 5182145 5183527 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(5182145..5183527) Pseudoalteromonas atlantica T6c 4176100 YP_663864.1 CDS Patl_4311 NC_008228.1 5183536 5184018 R putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein complement(5183536..5184018) Pseudoalteromonas atlantica T6c 4176101 YP_663865.1 CDS Patl_4312 NC_008228.1 5184129 5185760 R PFAM: 60 kDa inner membrane insertion protein; KEGG: pha:PSHAa3022 preprotein translocase ; inner membrane protein (IMP) integration factor; binds TM regions of nascent IMPs; required for sec-independent IMP integration; associated with the with SecYEG and SecDFyajC translocase; 60 kDa inner membrane insertion protein complement(5184129..5185760) Pseudoalteromonas atlantica T6c 4176102 YP_663866.1 CDS Patl_4313 NC_008228.1 5185872 5186126 R PFAM: protein of unknown function DUF37; KEGG: bld:BLi03210 hypothetical protein; hypothetical protein complement(5185872..5186126) Pseudoalteromonas atlantica T6c 4176103 YP_663867.1 CDS Patl_4314 NC_008228.1 5186087 5186449 R TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: pmu:PM1163 ribonuclease P; ribonuclease P protein component complement(5186087..5186449) Pseudoalteromonas atlantica T6c 4176104 YP_663868.1 CDS Patl_4315 NC_008228.1 5186459 5186593 R PFAM: ribosomal protein L34; KEGG: cps:CPS_5053 ribosomal protein L34; 50S ribosomal protein L34 complement(5186459..5186593) Pseudoalteromonas atlantica T6c 4176105 Patl_R0002 tRNA Patl_R0002 NC_008228.1 37720 37795 D tRNA-Ala 37720..37795 Pseudoalteromonas atlantica T6c 4173580 Patl_R0003 tRNA Patl_R0003 NC_008228.1 37814 37890 D tRNA-Ile 37814..37890 Pseudoalteromonas atlantica T6c 4173581 Patl_R0006 tRNA Patl_R0006 NC_008228.1 88587 88662 R tRNA-Phe complement(88587..88662) Pseudoalteromonas atlantica T6c 4171775 Patl_R0007 tRNA Patl_R0007 NC_008228.1 384670 384746 R tRNA-Arg complement(384670..384746) Pseudoalteromonas atlantica T6c 4173152 Patl_R0009 tRNA Patl_R0009 NC_008228.1 460587 460662 D tRNA-Ala 460587..460662 Pseudoalteromonas atlantica T6c 4173074 Patl_R0010 tRNA Patl_R0010 NC_008228.1 460681 460757 D tRNA-Ile 460681..460757 Pseudoalteromonas atlantica T6c 4173075 Patl_R0013 tRNA Patl_R0013 NC_008228.1 677910 677986 D tRNA-Trp 677910..677986 Pseudoalteromonas atlantica T6c 4173248 Patl_R0015 tRNA Patl_R0015 NC_008228.1 915633 915722 D tRNA-Ser 915633..915722 Pseudoalteromonas atlantica T6c 4173107 Patl_R0017 tRNA Patl_R0017 NC_008228.1 1203928 1204003 D tRNA-Ala 1203928..1204003 Pseudoalteromonas atlantica T6c 4171994 Patl_R0018 tRNA Patl_R0018 NC_008228.1 1204022 1204098 D tRNA-Ile 1204022..1204098 Pseudoalteromonas atlantica T6c 4171995 Patl_R0022 tRNA Patl_R0022 NC_008228.1 1385058 1385134 R tRNA-Met complement(1385058..1385134) Pseudoalteromonas atlantica T6c 4173195 Patl_R0024 tRNA Patl_R0024 NC_008228.1 1611083 1611158 D tRNA-Ala 1611083..1611158 Pseudoalteromonas atlantica T6c 4172806 Patl_R0025 tRNA Patl_R0025 NC_008228.1 1611177 1611253 D tRNA-Ile 1611177..1611253 Pseudoalteromonas atlantica T6c 4172807 Patl_R0029 tRNA Patl_R0029 NC_008228.1 1623355 1623431 D tRNA-Trp 1623355..1623431 Pseudoalteromonas atlantica T6c 4172818 Patl_R0030 tRNA Patl_R0030 NC_008228.1 1882865 1882949 D tRNA-Leu 1882865..1882949 Pseudoalteromonas atlantica T6c 4172568 Patl_R0031 tRNA Patl_R0031 NC_008228.1 2026333 2026409 D tRNA-Met 2026333..2026409 Pseudoalteromonas atlantica T6c 4172284 Patl_R0034 tRNA Patl_R0034 NC_008228.1 2299796 2299872 D tRNA-Pro 2299796..2299872 Pseudoalteromonas atlantica T6c 4172747 Patl_R0036 tRNA Patl_R0036 NC_008228.1 2725601 2725677 R tRNA-Met complement(2725601..2725677) Pseudoalteromonas atlantica T6c 4172398 Patl_R0037 tRNA Patl_R0037 NC_008228.1 2726512 2726588 R tRNA-Met complement(2726512..2726588) Pseudoalteromonas atlantica T6c 4172399 Patl_R0038 tRNA Patl_R0038 NC_008228.1 2877458 2877534 R tRNA-Asp complement(2877458..2877534) Pseudoalteromonas atlantica T6c 4172517 Patl_R0039 tRNA Patl_R0039 NC_008228.1 2877561 2877637 R tRNA-Asp complement(2877561..2877637) Pseudoalteromonas atlantica T6c 4172518 Patl_R0040 tRNA Patl_R0040 NC_008228.1 2877670 2877746 R tRNA-Asp complement(2877670..2877746) Pseudoalteromonas atlantica T6c 4172519 Patl_R0042 tRNA Patl_R0042 NC_008228.1 2976579 2976665 R tRNA-Leu complement(2976579..2976665) Pseudoalteromonas atlantica T6c 4174197 Patl_R0043 tRNA Patl_R0043 NC_008228.1 2976717 2976790 R tRNA-Cys complement(2976717..2976790) Pseudoalteromonas atlantica T6c 4174198 Patl_R0044 tRNA Patl_R0044 NC_008228.1 2976865 2976939 R tRNA-Gly complement(2976865..2976939) Pseudoalteromonas atlantica T6c 4174199 Patl_R0045 tRNA Patl_R0045 NC_008228.1 2981810 2981901 R tRNA-Ser complement(2981810..2981901) Pseudoalteromonas atlantica T6c 4174203 Patl_R0046 tRNA Patl_R0046 NC_008228.1 2981961 2982052 R tRNA-Ser complement(2981961..2982052) Pseudoalteromonas atlantica T6c 4174204 Patl_R0047 tRNA Patl_R0047 NC_008228.1 3042519 3042595 R tRNA-Val complement(3042519..3042595) Pseudoalteromonas atlantica T6c 4174261 Patl_R0048 tRNA Patl_R0048 NC_008228.1 3111841 3111915 D tRNA-Gln 3111841..3111915 Pseudoalteromonas atlantica T6c 4174322 Patl_R0049 tRNA Patl_R0049 NC_008228.1 3120067 3120143 D tRNA-Met 3120067..3120143 Pseudoalteromonas atlantica T6c 4174331 Patl_R0050 tRNA Patl_R0050 NC_008228.1 3120190 3120274 D tRNA-Leu 3120190..3120274 Pseudoalteromonas atlantica T6c 4174332 Patl_R0051 tRNA Patl_R0051 NC_008228.1 3120279 3120353 D tRNA-Gln 3120279..3120353 Pseudoalteromonas atlantica T6c 4174333 Patl_R0052 tRNA Patl_R0052 NC_008228.1 3120390 3120464 D tRNA-Gln 3120390..3120464 Pseudoalteromonas atlantica T6c 4174334 Patl_R0053 tRNA Patl_R0053 NC_008228.1 3535582 3535657 R tRNA-Glu complement(3535582..3535657) Pseudoalteromonas atlantica T6c 4174678 Patl_R0054 tRNA Patl_R0054 NC_008228.1 3535988 3536063 R tRNA-Glu complement(3535988..3536063) Pseudoalteromonas atlantica T6c 4174679 Patl_R0055 tRNA Patl_R0055 NC_008228.1 3536243 3536318 R tRNA-Glu complement(3536243..3536318) Pseudoalteromonas atlantica T6c 4174680 Patl_R0056 tRNA Patl_R0056 NC_008228.1 3536466 3536541 R tRNA-Ala complement(3536466..3536541) Pseudoalteromonas atlantica T6c 4174681 Patl_R0057 tRNA Patl_R0057 NC_008228.1 3538709 3538784 D tRNA-Val 3538709..3538784 Pseudoalteromonas atlantica T6c 4174683 Patl_R0058 tRNA Patl_R0058 NC_008228.1 3538942 3539017 D tRNA-Val 3538942..3539017 Pseudoalteromonas atlantica T6c 4174684 Patl_R0059 tRNA Patl_R0059 NC_008228.1 3539083 3539158 D tRNA-Val 3539083..3539158 Pseudoalteromonas atlantica T6c 4174685 Patl_R0060 tRNA Patl_R0060 NC_008228.1 3560104 3560179 R tRNA-Lys complement(3560104..3560179) Pseudoalteromonas atlantica T6c 4174703 Patl_R0061 tRNA Patl_R0061 NC_008228.1 3560215 3560290 R tRNA-Lys complement(3560215..3560290) Pseudoalteromonas atlantica T6c 4174704 Patl_R0062 tRNA Patl_R0062 NC_008228.1 3590980 3591056 D tRNA-Asn 3590980..3591056 Pseudoalteromonas atlantica T6c 4174733 Patl_R0063 tRNA Patl_R0063 NC_008228.1 3591151 3591227 D tRNA-Asn 3591151..3591227 Pseudoalteromonas atlantica T6c 4174734 Patl_R0064 tRNA Patl_R0064 NC_008228.1 3642021 3642097 R tRNA-Arg complement(3642021..3642097) Pseudoalteromonas atlantica T6c 4174784 Patl_R0065 tRNA Patl_R0065 NC_008228.1 3642145 3642221 R tRNA-Arg complement(3642145..3642221) Pseudoalteromonas atlantica T6c 4174785 Patl_R0066 tRNA Patl_R0066 NC_008228.1 3642328 3642418 R tRNA-Ser complement(3642328..3642418) Pseudoalteromonas atlantica T6c 4174786 Patl_R0067 tRNA Patl_R0067 NC_008228.1 3740303 3740377 D tRNA-Arg 3740303..3740377 Pseudoalteromonas atlantica T6c 4174880 Patl_R0068 tRNA Patl_R0068 NC_008228.1 3782051 3782135 R tRNA-Leu complement(3782051..3782135) Pseudoalteromonas atlantica T6c 4174911 Patl_R0069 tRNA Patl_R0069 NC_008228.1 3782139 3782214 R tRNA-His complement(3782139..3782214) Pseudoalteromonas atlantica T6c 4174912 Patl_R0070 tRNA Patl_R0070 NC_008228.1 3782243 3782319 R tRNA-Arg complement(3782243..3782319) Pseudoalteromonas atlantica T6c 4174913 Patl_R0071 tRNA Patl_R0071 NC_008228.1 3782350 3782426 R tRNA-Pro complement(3782350..3782426) Pseudoalteromonas atlantica T6c 4174914 Patl_R0072 tRNA Patl_R0072 NC_008228.1 4180208 4180282 R tRNA-Gly complement(4180208..4180282) Pseudoalteromonas atlantica T6c 4175258 Patl_R0073 tRNA Patl_R0073 NC_008228.1 4180333 4180407 R tRNA-Gly complement(4180333..4180407) Pseudoalteromonas atlantica T6c 4175259 Patl_R0074 tRNA Patl_R0074 NC_008228.1 4278490 4278575 R tRNA-Leu complement(4278490..4278575) Pseudoalteromonas atlantica T6c 4175338 Patl_R0075 tRNA Patl_R0075 NC_008228.1 4810989 4811064 R tRNA-Thr complement(4810989..4811064) Pseudoalteromonas atlantica T6c 4175777 Patl_R0076 tRNA Patl_R0076 NC_008228.1 4811071 4811145 R tRNA-Gly complement(4811071..4811145) Pseudoalteromonas atlantica T6c 4175778 Patl_R0077 tRNA Patl_R0077 NC_008228.1 4811184 4811268 R tRNA-Tyr complement(4811184..4811268) Pseudoalteromonas atlantica T6c 4175779 Patl_R0078 tRNA Patl_R0078 NC_008228.1 4811276 4811351 R tRNA-Thr complement(4811276..4811351) Pseudoalteromonas atlantica T6c 4175780 Patl_R0081 tRNA Patl_R0081 NC_008228.1 4836746 4836822 R tRNA-Ile complement(4836746..4836822) Pseudoalteromonas atlantica T6c 4175801 Patl_R0082 tRNA Patl_R0082 NC_008228.1 4836841 4836916 R tRNA-Ala complement(4836841..4836916) Pseudoalteromonas atlantica T6c 4175802 Patl_R0084 tRNA Patl_R0084 NC_008228.1 5087974 5088049 D tRNA-Thr 5087974..5088049 Pseudoalteromonas atlantica T6c 4176015 Patl_R0001 rRNA Patl_R0001 NC_008228.1 36085 37615 D 16S ribosomal RNA 36085..37615 Pseudoalteromonas atlantica T6c 4173579 Patl_R0004 rRNA Patl_R0004 NC_008228.1 38270 41154 D 23S ribosomal RNA 38270..41154 Pseudoalteromonas atlantica T6c 4172877 Patl_R0005 rRNA Patl_R0005 NC_008228.1 41317 41432 D 5S ribosomal RNA 41317..41432 Pseudoalteromonas atlantica T6c 4172878 Patl_R0008 rRNA Patl_R0008 NC_008228.1 458952 460482 D 16S ribosomal RNA 458952..460482 Pseudoalteromonas atlantica T6c 4173073 Patl_R0011 rRNA Patl_R0011 NC_008228.1 461137 464021 D 23S ribosomal RNA 461137..464021 Pseudoalteromonas atlantica T6c 4173076 Patl_R0012 rRNA Patl_R0012 NC_008228.1 464285 464400 D 5S ribosomal RNA 464285..464400 Pseudoalteromonas atlantica T6c 4173077 Patl_R0016 rRNA Patl_R0016 NC_008228.1 1202293 1203823 D 16S ribosomal RNA 1202293..1203823 Pseudoalteromonas atlantica T6c 4171993 Patl_R0019 rRNA Patl_R0019 NC_008228.1 1204478 1207362 D 23S ribosomal RNA 1204478..1207362 Pseudoalteromonas atlantica T6c 4173294 Patl_R0020 rRNA Patl_R0020 NC_008228.1 1207525 1207640 D 5S ribosomal RNA 1207525..1207640 Pseudoalteromonas atlantica T6c 4173295 Patl_R0023 rRNA Patl_R0023 NC_008228.1 1609448 1610978 D 16S ribosomal RNA 1609448..1610978 Pseudoalteromonas atlantica T6c 4172805 Patl_R0026 rRNA Patl_R0026 NC_008228.1 1611633 1614517 D 23S ribosomal RNA 1611633..1614517 Pseudoalteromonas atlantica T6c 4172808 Patl_R0027 rRNA Patl_R0027 NC_008228.1 1614680 1614795 D 5S ribosomal RNA 1614680..1614795 Pseudoalteromonas atlantica T6c 4172809 Patl_R0079 rRNA Patl_R0079 NC_008228.1 4833103 4833218 R 5S ribosomal RNA complement(4833103..4833218) Pseudoalteromonas atlantica T6c 4175799 Patl_R0080 rRNA Patl_R0080 NC_008228.1 4833482 4836366 R 23S ribosomal RNA complement(4833482..4836366) Pseudoalteromonas atlantica T6c 4175800 Patl_R0083 rRNA Patl_R0083 NC_008228.1 4837021 4838551 R 16S ribosomal RNA complement(4837021..4838551) Pseudoalteromonas atlantica T6c 4175803