-- dump date 20140620_003222 -- class Genbank::CDS -- table cds_note -- id note YP_659588.1 KEGG: vpa:VP0011 chromosomal DNA replication initiator DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator, DnaA-like Chromosomal replication initiator, DnaA; SMART: ATPase YP_659589.1 KEGG: ilo:IL0002 DNA polymerase sliding clamp subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain YP_659590.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC protein-like; KEGG: vpa:VP0013 RecF protein YP_659591.1 KEGG: ppr:PBPRA0011 putative DNA gyrase, subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B-like ATP-binding region, ATPase-like TOPRIM domain containing protein DNA topoisomerase, type IIA, subunit B, region 2; SMART: DNA topoisomerase, type IIA, subunit B or-like YP_659592.1 TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: dps:DP1920 hypothetical protein YP_659593.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein histidine kinase, HAMP region; KEGG: tdn:Tmden_2088 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) YP_659594.1 KEGG: hch:HCH_00343 hypothetical protein YP_659595.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_659596.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_659597.1 KEGG: son:SO0016 DNA-3-methyladenine glycosidase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase YP_659598.1 KEGG: pha:PSHAa2750 hypothetical protein YP_659599.1 PFAM: protein of unknown function DUF414; KEGG: pha:PSHAa2751 hypothetical protein YP_659600.1 PFAM: cytochrome c, class I; KEGG: vfi:VF0076 cytochrome c4 YP_659601.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_659602.1 KEGG: vfi:VF0074 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase 5'-3' exonuclease 3'-5' exonuclease; SMART: Helix-hairpin-helix motif, class 2 YP_659603.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: cps:CPS_0015 Trk system potassium uptake protein TrkH YP_659604.1 PFAM: TraT complement resistance; KEGG: pha:PSHAa0591 complement resistance protein precursor YP_659605.1 KEGG: pha:PSHAa0592 hypothetical protein YP_659606.1 KEGG: son:SO4561 hypothetical protein YP_659607.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_659608.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) NusB/RsmB/TIM44; KEGG: vfi:VF2545 16S rRNA m(5)C 967 methyltransferase YP_659609.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase-like; KEGG: son:SO0031 methionyl-tRNA formyltransferase YP_659610.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_659611.1 PFAM: Peptidoglycan-binding LysM; KEGG: pha:PSHAa0024 hypothetical protein YP_659612.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF protein; KEGG: ppr:PBPRA3577 hypothetical Smf protein YP_659613.1 PFAM: protein of unknown function DUF494; KEGG: cps:CPS_0023 smg protein YP_659614.1 PFAM: DNA topoisomerase, type IA, zn finger; KEGG: vch:VC0050 DNA topoisomerase I-related protein YP_659615.1 PFAM: SUA5/yciO/yrdC-like; KEGG: eca:ECA3996 putative DNA topoisomerase YP_659616.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_659617.1 PFAM: OmpW; KEGG: cps:CPS_0029 outer membrane protein, OmpW family YP_659618.1 KEGG: vfi:VF2535 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase Shikimate dehydrogenase substrate binding-like YP_659620.1 KEGG: pha:PSHAa0033 carbonic anhydrase/acetyltransferase YP_659621.1 KEGG: vpa:VP2035 hypothetical protein YP_659622.1 KEGG: vvy:VV1296 hypothetical protein YP_659623.1 PFAM: protein of unknown function DUF55; KEGG: vpa:VP2976 hypothetical protein YP_659626.1 PFAM: protein of unknown function DUF885; KEGG: son:SO4732 hypothetical protein YP_659627.1 KEGG: eca:ECA4350 hypothetical protein YP_659628.1 PFAM: peptidase M28; KEGG: ilo:IL1029 probable aminopeptidase YP_659629.1 PFAM: protein of unknown function DUF885; KEGG: ilo:IL2415 hypothetical protein YP_659630.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly YP_659631.1 KEGG: son:SO4249 DNA/pantothenate metabolism flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein DNA/pantothenate metabolism flavoprotein-like YP_659632.1 PFAM: DNA repair protein RadC; KEGG: noc:Noc_0236 DNA repair protein RadC YP_659633.1 PFAM: glycosyl transferase, family 2; KEGG: bth:BT3365 putative glycosyltransferase YP_659634.1 PFAM: ribosomal protein L28; KEGG: msu:MS1942 ribosomal protein L28 YP_659635.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_659637.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_659638.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: son:SO4680 hypothetical protein YP_659639.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_659640.1 KEGG: cps:CPS_4204 hypothetical protein YP_659641.1 catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position YP_659642.1 PFAM: glycosyl transferase, group 1; KEGG: cps:CPS_4182 putative lipopolysaccharide core biosynthesis mannosyltransferase YP_659643.1 PFAM: glycosyl transferase, group 1 Three-deoxy-D-manno-octulosonic-acid transferase-like; KEGG: pfl:PFL_0536 3-deoxy-D-manno-octulosonic-acid transferase YP_659644.1 KEGG: noc:Noc_1149 hypothetical protein YP_659645.1 KEGG: cps:CPS_0951 hypothetical protein YP_659646.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: cps:CPS_0952 GGDEF/EAL domain protein YP_659647.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine YP_659648.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism YP_659649.1 PFAM: Rhodanese-like; KEGG: vvy:VV0117 rhodanese-related sulfurtransferase YP_659650.1 PFAM: Rhomboid-like protein; KEGG: cps:CPS_0123 putative GlpG protein YP_659651.1 PFAM: flagellar basal body-associated protein FliL; KEGG: pha:PSHAa2312 flagellar basal body-associated protein YP_659652.1 PFAM: Chorismate lyase; KEGG: son:SO0131 putative chorismate--pyruvate lyase YP_659653.1 TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: sdy:SDY_4534 4-hydroxybenzoate-octaprenyltransferase YP_659654.1 PFAM: histidine kinase, HAMP region chemotaxis sensory transducer; KEGG: hch:HCH_01925 methyl-accepting chemotaxis protein YP_659655.1 PFAM: protein of unknown function DUF526; KEGG: pha:PSHAa2763 hypothetical protein YP_659656.1 TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: ppr:PBPRA0091 putative ATP-dependent DNA helicase Rep YP_659657.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL GAF; KEGG: ilo:IL0206 intracellular signaling protein (GAF,GGDEF,EAL domains) YP_659658.1 PFAM: cytochrome c, class I; KEGG: vvy:VV0041 cytochrome c5 YP_659659.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA YP_659660.1 PFAM: alpha/beta hydrolase fold; KEGG: rba:RB13257 probable oxidoreductase-putative hydrolase involved in aromatic ring cleavage YP_659661.1 PFAM: Fe(II) trafficking protein YggX; KEGG: ilo:IL1984 hypothetical protein YP_659662.1 KEGG: son:SO3368 A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif HhH-GPD; SMART: Iron-sulfur cluster loop YP_659663.1 PFAM: alpha/beta hydrolase fold; KEGG: bba:Bd0910 putative hydrolase YP_659664.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_659665.1 PFAM: methyltransferase small Methyltransferase small-like; KEGG: pha:PSHAa0552 ribosomal RNA small subunit methyltransferase C YP_659666.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_659667.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: ilo:IL0492 signal transduction histidine kinase (contains HAMP domain) YP_659668.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: hit:NTHI1047 aerobic respiration control protein ArcA YP_659669.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: vpa:VP2862 FxsA protein YP_659670.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm YP_659671.1 KEGG: cac:CAC3665 alpha/beta superfamily hydrolase YP_659672.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_659673.1 PFAM: protein of unknown function DUF479; KEGG: vch:VCA0769 hypothetical protein YP_659674.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_659675.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment; KEGG: vvy:VV3135 biotin carboxyl carrier protein YP_659676.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding Carbamoyl-phosphate synthetase large chain-like biotin carboxylase-like RimK-like ATP-grasp; KEGG: ppr:PBPRA3406 putative acetyl-CoA carboxylase, biotin carboxylase YP_659677.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cps:CPS_2888 MATE efflux family protein YP_659678.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_659679.1 PFAM: helix-turn-helix, HxlR type; KEGG: hch:HCH_00848 predicted transcriptional regulator YP_659680.1 KEGG: cps:CPS_3716 glycosyl hydrolase, family 16 YP_659681.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: ath:At2g36310 inosine-uridine preferring nucleoside hydrolase family protein YP_659684.1 PFAM: sodium/calcium exchanger membrane region; KEGG: cef:CE0451 Ca2+:cation antiporter, CaCA family YP_659685.1 KEGG: cps:CPS_1161 putative lipoprotein YP_659686.1 PFAM: regulatory protein, MarR; KEGG: pha:PSHAb0179 putative OhrR transcriptional regulator, MarR/EmrR family YP_659687.1 PFAM: OsmC-like protein; KEGG: pha:PSHAb0180 putative organic hydroperoxide resistance protein YP_659688.1 PFAM: ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: bja:blr6138 hypothetical protein YP_659689.1 PFAM: VWA containing CoxE-like; KEGG: rpb:RPB_0718 VWA containing CoxE-like YP_659690.1 PFAM: helix-turn-helix, AraC type; KEGG: pfl:PFL_5085 transcriptional regulator, AraC family YP_659691.1 PFAM: acyl-CoA dehydrogenase-like; KEGG: ccr:CC1310 acyl-CoA dehydrogenase family protein YP_659692.1 PFAM: acyl-CoA dehydrogenase-like; KEGG: rpb:RPB_1750 acyl-CoA dehydrogenase-like YP_659693.1 TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB region; KEGG: vpa:VP0152 transcription elongation factor GreB YP_659694.1 PFAM: FKBP-type peptidyl-prolyl isomerase-like peptidylprolyl isomerase, FKBP-type; KEGG: pha:PSHAa2901 periplasmic peptidyl-prolyl cis-trans isomerase YP_659695.1 PFAM: WD-40 repeat; KEGG: pha:PSHAa2902 G-protein beta WD-40 repeat YP_659696.1 PFAM: SlyX; KEGG: vpa:VP2780 SlyX protein YP_659697.1 TIGRFAM: conserved hypothetical protein; KEGG: cps:CPS_0434 conserved hypothetical protein YP_659698.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: ppr:PBPRA0301 putative ABC transporter, ATP-binding protein YP_659699.1 PFAM: GCN5-related N-acetyltransferase; KEGG: reu:Reut_A1932 GCN5-related N-acetyltransferase YP_659700.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: cvi:CV0764 probable transcriptional regulator, LysR family YP_659701.1 PFAM: conserved hypothetical protein 698; KEGG: yps:YPTB1338 hypothetical protein YP_659702.1 TIGRFAM: putative alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: bfs:BF1814 putative outer membrane protein YP_659703.1 TIGRFAM: putative alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: bfr:BF0757 putative alpha-1,2-mannosidase YP_659704.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: cps:CPS_2647 hypothetical protein YP_659705.1 TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_2649 glucose/galactose transporter family protein YP_659706.1 TIGRFAM: putative alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: bth:BT3962 putative sugar hydrolase YP_659707.1 PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: vch:VC2677 transcriptional repressor, LacI family YP_659708.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAb0165 putative TonB-dependent receptor; outer membrane YP_659709.1 PFAM: coagulation factor 5/8 type-like; KEGG: sma:SAV2252 putative ATP/GTP-binding protein YP_659710.1 PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: cps:CPS_1026 BadF/BadG/BcrA/BcrD ATPase family protein YP_659711.1 KEGG: xcb:XC_1195 asparaginase; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: peptidase T2, asparaginase 2 YP_659712.1 PFAM: glycoside hydrolase, family 85; KEGG: bha:BH0785 endo-beta-N-acetylglucosaminidase YP_659713.1 PFAM: CutC; KEGG: hsa:51076 cutC copper transporter homolog (E. coli) YP_659714.1 PFAM: glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, sugar binding; KEGG: bfr:BF1733 beta-mannosidase YP_659715.1 PFAM: Na+/solute symporter; KEGG: bth:BT3029 Na+/glucose symporter YP_659716.1 TIGRFAM: putative alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: bth:BT3773 hypothetical protein YP_659717.1 PFAM: sugar isomerase (SIS); KEGG: son:SO3506 glucosamine-6-phosphate isomerase YP_659718.1 KEGG: xac:XAC3767 hypothetical protein YP_659719.1 KEGG: hch:HCH_06070 hypothetical protein YP_659720.1 PFAM: alpha/beta hydrolase fold; KEGG: pha:PSHAa2908 enzyme with alpha/beta-hydrolase domain YP_659721.1 PFAM: protein of unknown function UPF0270; KEGG: sec:SC3397 hypothetical protein YP_659722.1 PFAM: YceI; KEGG: hch:HCH_00246 hypothetical protein YP_659723.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: ilo:IL0324 3'-phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase YP_659724.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose YP_659725.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: cps:CPS_0423 HAD-superfamily hydrolase, subfamily IA, variant 3 family protein YP_659726.1 PFAM: Inorganic pyrophosphatase; KEGG: eca:ECA3593 inorganic pyrophosphatase YP_659727.1 PFAM: major facilitator superfamily MFS_1; KEGG: vfi:VFA0729 transporter, MFS superfamily YP_659728.1 KEGG: pha:PSHAa0449 hypothetical protein YP_659729.1 PFAM: histidine kinase, HAMP region chemotaxis sensory transducer; KEGG: hch:HCH_06069 methyl-accepting chemotaxis protein YP_659730.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: pha:PSHAa0187 hypothetical protein YP_659731.1 PFAM: thioesterase superfamily; KEGG: cps:CPS_0929 thioesterase family protein YP_659732.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: ppr:PBPRA3290 putative excinuclease ABC, subunit A YP_659733.1 PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa2706 transporter (MFS) YP_659734.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: pha:PSHAa2705 single-strand binding protein (ssb) (helix-destabilizing protein) YP_659735.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC3461 TonB-dependent receptor YP_659736.1 KEGG: vfi:VF1472 zinc finger protein YP_659737.1 PFAM: DNA photolyase, FAD-binding; KEGG: vch:VC1392 deoxyribodipyrimidine photolyase, putative YP_659738.1 PFAM: DNA photolyase, FAD-binding DNA photolyase-like; KEGG: ilo:IL0122 deoxyribodipyrimidine photolyase YP_659739.1 PFAM: aldehyde dehydrogenase; KEGG: reu:Reut_A1459 aldehyde dehydrogenase (NAD+) YP_659740.1 PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO1971 AMP-binding family protein YP_659741.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: nar:Saro_2601 TonB-dependent receptor YP_659742.1 KEGG: nar:Saro_1690 cytochrome c, class I YP_659743.1 KEGG: nar:Saro_1688 amine dehydrogenase; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Methylamine dehydrogenase light chain, C terminal YP_659744.1 PFAM: Redoxin; KEGG: nar:Saro_1687 hypothetical protein YP_659745.1 KEGG: reu:Reut_B4079 hypothetical protein YP_659746.1 KEGG: nar:Saro_1685 amine dehydrogenase YP_659747.1 PFAM: regulatory protein, TetR; KEGG: nar:Saro_1684 transcriptional regulator, TetR family YP_659748.1 PFAM: regulatory proteins, AsnC/Lrp Helix-turn-helix, type 11; KEGG: pha:PSHAb0429 putative transcriptional regulator, AsnC family YP_659749.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate YP_659750.1 PFAM: arginine N-succinyltransferase beta subunit; KEGG: pha:PSHAb0427 putative arginine succinyltransferase YP_659751.1 KEGG: pha:PSHAb0425 hypothetical protein YP_659752.1 KEGG: son:SO4114.2 hypothetical biogenesis protein MshI YP_659753.1 KEGG: vvu:VV11433 MSHA biogenesis protein MshI YP_659754.1 KEGG: son:SO4114 MSHA biogenesis protein MshJ YP_659756.1 TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein Secretin-like Secretin/TonB, short N-terminal; KEGG: cps:CPS_4576 MSHA biogenesis protein MshL YP_659757.1 KEGG: cps:CPS_4575 MSHA biogenesis protein MshM YP_659758.1 KEGG: ilo:IL0369 membrane associated TPR repeats containing protein YP_659759.1 PFAM: type II secretion system protein E General secretory system II, protein E-like; KEGG: pha:PSHAa2692 mannose-sensitive agglutinin (MSHA) biogenesis protein MshE (pilus type IV) YP_659760.1 PFAM: type II secretion system protein; KEGG: ilo:IL0371 type II secretory pathway YP_659761.1 KEGG: cps:CPS_4571 hypothetical protein YP_659762.1 PFAM: methylation; KEGG: ilo:IL0373 pilin protein YP_659763.1 PFAM: methylation; KEGG: pha:PSHAa2689 mannose-sensitive agglutinin (MSHA) biogenesis protein MshA (pilus type IV) YP_659764.1 PFAM: methylation; KEGG: cps:CPS_4568 MSHA pilin protein MshC YP_659765.1 TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: pha:PSHAa2687 mannose-sensitive agglutinin (MSHA) biogenesis protein MshD (pilus type IV) YP_659766.1 PFAM: methylation; KEGG: cps:CPS_4566 putative MSHA biogenesis protein MshO YP_659767.1 KEGG: ilo:IL0378 type II secretory pathway component YP_659768.1 PFAM: CUB; KEGG: hch:HCH_06140 hypothetical protein YP_659769.1 functions in MreBCD complex in some organisms YP_659770.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_659771.1 PFAM: Rod shape-determining protein MreD; KEGG: cps:CPS_4558 rod shape-determining protein MreD YP_659772.1 TIGRFAM: maf protein; PFAM: Maf-like protein; KEGG: vvy:VV2931 nucleotide-binding protein YP_659773.1 involved in the processing of the 5'end of 16S rRNA YP_659774.1 TIGRFAM: conserved hypothetical protein; KEGG: pha:PSHAa2677 hypothetical protein YP_659775.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ilo:IL0387 predicted amidohydrolase, nitrilase family YP_659776.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: pha:PSHAa2675 suppressor of CsrA inhibitory activity; peptidase; involved in the control of DNA gyrase YP_659777.1 PFAM: Ig-like, group 1; KEGG: son:SO4080 hypothetical protein YP_659778.1 PFAM: protein of unknown function DUF615; KEGG: ilo:IL0389 hypothetical protein YP_659779.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: vpa:VP2676 PmbA protein YP_659780.1 PFAM: peptidase S9, prolyl oligopeptidase active site region; KEGG: gvi:glr0176 unknown protein YP_659782.1 PFAM: glutathione S-transferase-like; KEGG: cps:CPS_2495 putative glutathione S-transferase YP_659783.1 PFAM: protein of unknown function DUF107; KEGG: pha:PSHAb0271 hypothetical protein YP_659784.1 PFAM: band 7 protein; KEGG: pha:PSHAb0272 hypothetical protein YP_659785.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters YP_659786.1 PFAM: Lytic transglycosylase, catalytic; KEGG: cps:CPS_0011 putative soluble lytic murein transglycosylase YP_659787.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids YP_659788.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids YP_659789.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: bfs:BF2697 putative exported TonB-dependent receptor protein YP_659790.1 PFAM: major facilitator superfamily MFS_1; KEGG: noc:Noc_1547 major facilitator superfamily MFS_1 YP_659791.1 KEGG: pha:PSHAa1074 hypothetical protein YP_659792.1 KEGG: sbo:SBO_1464 hypothetical protein YP_659793.1 KEGG: vvy:VVA0953 dienelactone hydrolase; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: dienelactone hydrolase YP_659794.1 PFAM: regulatory protein, TetR; KEGG: cps:CPS_1681 transcriptional regulator, TetR family YP_659795.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR Male sterility-like; KEGG: rba:RB3632 conserved hypothetical protein-putative short chain dehydrogenase YP_659796.1 PFAM: protein of unknown function DUF344; KEGG: rpa:RPA4569 DUF344 YP_659797.1 PFAM: Patatin; KEGG: wol:WD0565 patatin family protein YP_659798.1 PFAM: aminotransferase, class V aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mag:amb2464 serine-pyruvate aminotransferase YP_659799.1 PFAM: protein of unknown function DUF161; KEGG: hch:HCH_02915 hypothetical protein YP_659800.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ilo:IL0221 predicted dioxygenase of extradiol dioxygenase family YP_659801.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_659802.1 KEGG: vpa:VP2813 hypothetical protein YP_659803.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: cps:CPS_0650 sensor histidine kinase YP_659804.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: cps:CPS_0651 DNA-binding response regulator YP_659805.1 KEGG: cps:CPS_0652 hypothetical protein YP_659806.1 KEGG: cps:CPS_0653 hypothetical protein YP_659807.1 KEGG: pha:PSHAb0433 hypothetical protein YP_659809.1 PFAM: peptidase M42; KEGG: tcx:Tcr_0276 hypothetical protein YP_659810.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: ilo:IL2312 phosphoribulokinase YP_659811.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation YP_659812.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR YP_659813.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_659814.1 PFAM: RNA-binding S4; KEGG: ilo:IL2028 ribosome-associated heat shock protein implicated in the recycling of the 50S subunit YP_659815.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: neu:NE0658 short-chain dehydrogenase/reductase (SDR) superfamily YP_659816.1 TIGRFAM: general secretion pathway protein C; KEGG: cps:CPS_4592 general secretion pathway protein C YP_659817.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein NolW-like; KEGG: cps:CPS_4591 general secretion pathway protein D YP_659818.1 KEGG: ilo:IL2025 type II secretory pathway, ATPase PulE-like; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: ATPase YP_659819.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: ppr:PBPRA3479 putative general secretion pathway protein F YP_659820.1 TIGRFAM: general secretion pathway protein G; PFAM: methylation type II secretion system protein G; KEGG: eca:ECA3106 general secretion pathway protein G YP_659821.1 TIGRFAM: general secretion pathway protein H; PFAM: methylation; KEGG: cps:CPS_4587 general secretion pathway protein H YP_659822.1 TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J methylation; KEGG: cps:CPS_4586 general secretion pathway protein I YP_659823.1 TIGRFAM: general secretion pathway protein J; PFAM: methylation; KEGG: cps:CPS_4585 general secretion pathway protein J YP_659824.1 PFAM: General secretion pathway protein K; KEGG: son:SO0173 general secretion pathway protein K YP_659825.1 TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: son:SO0174 general secretion pathway protein L YP_659826.1 PFAM: General secretion pathway M protein; KEGG: son:SO0175 general secretion pathway protein M YP_659827.1 PFAM: type II secretion system protein N; KEGG: pha:PSHAa0242 general secretion pathway protein N YP_659828.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_659829.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase-like cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; KEGG: vfi:VF0265 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase YP_659830.1 PFAM: S1/P1 nuclease; KEGG: pha:PSHAb0342 putative S1/P1 nuclease YP_659831.1 KEGG: vfi:VF2402 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D) YP_659832.1 PFAM: NUDIX hydrolase; KEGG: ilo:IL2307 NUDIX family pyrophosphohydrolases containing a Zn-finger YP_659833.1 PFAM: ferric-uptake regulator; KEGG: pha:PSHAa0493 zinc uptake regulation protein YP_659834.1 PFAM: CheC-like protein; KEGG: ilo:IL1932 chemotaxis protein CheX YP_659835.1 PFAM: protein of unknown function UPF0047; KEGG: vpa:VP2732 hypothetical protein YP_659836.1 PFAM: Thrombospondin type 3 repeat OmpA/MotB OmpF; KEGG: cps:CPS_0958 OmpA family protein YP_659837.1 KEGG: son:SO3917 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB-like helicase-like; SMART: ATPase YP_659838.1 TIGRFAM: ATP-dependent DNA helicase, RecQ family ATP-dependent DNA helicase RecQ; PFAM: helicase-like HRDC DEAD/DEAH box helicase-like; KEGG: pha:PSHAa2572 ATP-dependent DNA helicase YP_659839.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily; KEGG: pha:PSHAa2571 hypothetical protein YP_659840.1 PFAM: globin; KEGG: hch:HCH_01422 truncated hemoglobin YP_659841.1 KEGG: hch:HCH_01423 hypothetical protein YP_659842.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: hch:HCH_01424 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain YP_659843.1 KEGG: pha:PSHAa0455 hypothetical protein YP_659844.1 KEGG: pha:PSHAa2575 hypothetical protein YP_659845.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pha:PSHAa0358 hypothetical protein YP_659846.1 PFAM: surface antigen (D15); KEGG: pha:PSHAa1983 outer membrane protein YP_659847.1 PFAM: protein of unknown function DUF490; KEGG: vvu:VV10711 hypothetical protein YP_659848.1 PFAM: CBS domain containing protein MgtE integral membrane region MgtE intracellular region; KEGG: pha:PSHAa0712 magnesium transporter YP_659849.1 PFAM: protein of unknown function DUF1328; KEGG: rru:Rru_A0119 protein of unknown function DUF1328 YP_659850.1 PFAM: transport-associated; KEGG: vpa:VP0081 putative hyperosmotically inducible periplasmic protein YP_659851.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein response regulator receiver; KEGG: hch:HCH_00862 response regulator containing a CheY-like receiver domain and a GGDEF domain YP_659852.1 KEGG: vpa:VP2898 phosphoribosylamine-glycine ligase; TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase protein of unknown function DUF201 YP_659853.1 KEGG: pha:PSHAa0344 hypothetical protein YP_659854.1 KEGG: vpa:VP2896 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme MGS-like YP_659855.1 PFAM: helix-turn-helix, Fis-type; KEGG: pha:PSHAa0346 DNA-binding protein YP_659856.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: pha:PSHAa0347 tRNA-dihydrouridine synthase B YP_659857.1 KEGG: pha:PSHAa1272 hypothetical protein YP_659858.1 PFAM: Thioredoxin domain; KEGG: ilo:IL1994 thioredoxin domain-containing protein YP_659859.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pha:PSHAa1830 transcriptional regulator with periplasmic binding protein domain (LysR) YP_659860.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: pha:PSHAa1831 AhpC-TSA YP_659861.1 TIGRFAM: haloacid dehalogenase, type II HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like) HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: pha:PSHAa1832 cryptic haloacid dehalogenase 1 (partial) YP_659862.1 KEGG: psb:Psyr_4383 esterase/lipase/thioesterase family protein YP_659863.1 PFAM: pentapeptide repeat; KEGG: son:SO4064 mcbg protein, putative YP_659865.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: son:SO1583 hypothetical protein YP_659866.1 KEGG: dps:DP1414 hypothetical protein YP_659867.1 TIGRFAM: tryptophan-rich Ignore; KEGG: ilo:IL0283 hypothetical protein YP_659868.1 KEGG: xac:XAC1528 toxin secretion ABC transporter ATP-binding protein YP_659869.1 KEGG: xcv:XCV1570 membrane fusion protein YP_659870.1 KEGG: xcv:XCV1569 outer membrane efflux protein YP_659872.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_659873.1 PFAM: transcription elongation factor GreA/GreB region; KEGG: ilo:IL0629 transcription elongation factor family protein YP_659875.1 PFAM: Na+/solute symporter; KEGG: vpa:VPA0087 putative transporter YP_659876.1 PFAM: oxidoreductase-like; KEGG: bcl:ABC0577 oxidoreductase YP_659877.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: rspA; starvation sensing protein RspA YP_659878.1 PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: bcl:ABC3358 transcriptional regulator, LacI family YP_659879.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: hch:HCH_06292 choline-glycine betaine transporter YP_659880.1 KEGG: cps:CPS_1901 putative lipoprotein YP_659881.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_1902 TonB-dependent receptor YP_659882.1 KEGG: vvu:VV10717 hypothetical protein YP_659883.1 PFAM: ferric-uptake regulator; KEGG: hch:HCH_01703 Fe2+/Zn2+ uptake regulation protein YP_659884.1 KEGG: cps:CPS_1818 hypothetical protein YP_659885.1 PFAM: cobalamin synthesis protein, P47K cobalamin synthesis CobW-like; KEGG: cps:CPS_1815 cobalamin synthesis protein/P47K family protein YP_659886.1 KEGG: cps:CPS_1816 hypothetical protein YP_659887.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis YP_659888.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: vvy:VVA0896 hypothetical protein YP_659889.1 KEGG: cps:CPS_1814 hypothetical protein YP_659891.1 KEGG: cps:CPS_1814 hypothetical protein YP_659892.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: cps:CPS_1813 ABC transporter, ATP-binding protein YP_659893.1 PFAM: protein of unknown function DUF214; KEGG: cps:CPS_1812 putative permease YP_659894.1 KEGG: ilo:IL2128 predicted flavoprotein YP_659895.1 KEGG: pha:PSHAa1603 hypothetical protein YP_659896.1 PFAM: beta-lactamase-like; KEGG: bbr:BB4943 metallo-beta-lactamase family protein YP_659897.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: nar:Saro_1823 TonB-dependent siderophore receptor YP_659899.1 PFAM: PepSY-associated TM helix; KEGG: pfo:Pfl_0927 aspartate kinase YP_659900.1 PFAM: helix-turn-helix, AraC type; KEGG: hch:HCH_00884 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain YP_659901.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: pfo:Pfl_3948 acyl-CoA dehydrogenase-like YP_659902.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: dar:Daro_1554 2-nitropropane dioxygenase, NPD YP_659903.1 PFAM: carboxyl transferase; KEGG: pae:PA2888 propionyl-CoA carboxylase beta chain YP_659904.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pae:PA2890 probable enoyl-CoA hydratase/isomerase YP_659905.1 PFAM: biotin/lipoyl attachment Carbamoyl-phosphate synthase L chain, ATP-binding Carbamoyl-phosphate synthetase large chain-like biotin carboxylase-like; KEGG: hch:HCH_05752 acetyl/propionyl-CoA carboxylase, alpha subunit YP_659906.1 PFAM: protein of unknown function DUF1446; KEGG: hch:HCH_05745 predicted ATPase YP_659907.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pfl:PFL_4195 oxidoreductase, short-chain dehydrogenase/reductase family YP_659908.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rpb:RPB_3261 AMP-dependent synthetase and ligase YP_659909.1 KEGG: cch:Cag_0738 VCBS YP_659912.1 TIGRFAM: deoxycytidine triphosphate deaminase; PFAM: deoxyUTP pyrophosphatase; KEGG: mst:Msp_1048 deoxycytidine triphosphate deaminase YP_659916.1 PFAM: protein of unknown function DUF839; KEGG: ccr:CC1375 hypothetical protein YP_659917.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: xcv:XCV1601 hypothetical protein YP_659918.1 KEGG: tth:TTC0614 hypothetical protein YP_659919.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3961 TonB-dependent receptor YP_659920.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: rba:RB7512 putative integral membrane transport protein YP_659921.1 PFAM: MOFRL; KEGG: pfl:PFL_1698 hydroxypyruvate reductase, putative YP_659922.1 PFAM: ROK domain containing protein; KEGG: xcb:XC_4142 transcriptional regulator YP_659923.1 PFAM: cyclic-AMP phosphodiesterase, class-II; KEGG: vfi:VF1256 3',5'-cyclic-nucleotide phosphodiesterase YP_659924.1 PFAM: HemY-like; KEGG: vch:VC0117 HemY protein YP_659925.1 PFAM: protein of unknown function DUF513, hemX; KEGG: ppr:PBPRA3530 hypothetical uroporphyrin-III C-methyltransferase YP_659926.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: vch:VC0119 uroporphyrinogen-III synthase YP_659927.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_659928.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_06509 histone acetyltransferase HPA2/related acetyltransferase YP_659929.1 PFAM: YHS; KEGG: vvy:VV0794 hypothetical protein YP_659930.1 PFAM: phospholipase/Carboxylesterase; KEGG: pha:PSHAa0096 hypothetical protein YP_659931.1 PFAM: Frataxin-like; KEGG: pha:PSHAa0095 iron scavenging protein YP_659932.1 Essential for recycling GMP and indirectly, cGMP YP_659933.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_659934.1 KEGG: cps:CPS_4973 guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: TGS metal-dependent phosphohydrolase, HD subdomain RelA/SpoT; SMART: Metal-dependent phosphohydrolase, HD region YP_659935.1 TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: ilo:IL2379 endoribonuclease L-PSP family protein YP_659936.2 specifically modifies tRNA at position G18 YP_659937.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: son:SO1381 hypothetical protein YP_659938.1 catalyzes branch migration in Holliday junction intermediates YP_659939.1 PFAM: protein of unknown function DUF548; KEGG: ppr:PBPRA3533 conserved hypothetical protein YP_659940.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vpa:VP1864 hypothetical protein YP_659941.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: vvy:VVA1236 peroxiredoxin YP_659942.1 KEGG: gvi:glr0437 unknown protein YP_659943.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sru:SRU_0147 ABC transporter ATP-binding protein YP_659944.1 PFAM: regulatory protein, LuxR Autoinducer-binding; KEGG: nmu:Nmul_A2417 transcriptional regulator, LuxR family YP_659946.1 PFAM: autoinducer synthesis protein; KEGG: vfi:VFA0924 LuxI, autoinducer synthesis protein YP_659955.1 KEGG: bcl:ABC3232 hypothetical protein YP_659956.1 KEGG: pha:PSHAa1766 hypothetical protein YP_659957.1 KEGG: hch:HCH_05423 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain YP_659958.1 putative metalloprotease YP_659959.1 PFAM: putative cyclase; KEGG: bha:BH0378 hypothetical protein YP_659960.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like HI0933-like protein FAD dependent oxidoreductase FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: vfi:VF0086 NAD(FAD)-utilizing dehydrogenases YP_659961.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_2088 TonB-dependent receptor YP_659962.1 PFAM: oxidoreductase FAD/NAD(P)-binding Oxidoreductase FAD-binding region FAD-binding 8 Ferric reductase-like transmembrane component-like; KEGG: ade:Adeh_0299 oxidoreductase FAD/NAD(P)-binding protein YP_659963.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like FAD dependent oxidoreductase FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: afu:AF1463 fumarate reductase flavoprotein subunit YP_659964.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: afu:AF1461 iron-sulfur cluster binding protein, putative YP_659965.1 PFAM: regulatory proteins, IclR; KEGG: chy:CHY_1273 transcriptional regulator, IclR family YP_659966.1 KEGG: bja:bll6424 hypothetical protein YP_659967.1 PFAM: sulfatase; KEGG: pfl:PFL_0205 arylsulfatase YP_659968.1 KEGG: hch:HCH_06743 hypothetical protein YP_659969.1 PFAM: thioesterase superfamily; KEGG: sil:SPO0440 thioesterase family protein YP_659970.1 KEGG: ilo:IL1417 outer membrane protein, porin family YP_659972.1 KEGG: pha:PSHAa2209 hypothetical protein YP_659973.1 PFAM: Sterol desaturase; KEGG: par:Psyc_1393 possible sterol desaturase YP_659974.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: ilo:IL1156 phosphatidylglycerophosphate synthase YP_659975.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: vvu:VV12861 ABC-type uncharacterized transport system, ATPase component YP_659976.1 KEGG: vch:VC1665 ABC transporter, permease protein, putative YP_659977.1 KEGG: vch:VC1664 ABC transporter, periplasmic substrate-binding protein, putative YP_659978.1 KEGG: ilo:IL1167 hypothetical protein YP_659979.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase glucose-inhibited division protein A pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ilo:IL1160 mercuric reductase, membrane-associated YP_659980.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAb0232 putative TonB dependent receptor YP_659981.1 PFAM: major facilitator superfamily MFS_1; KEGG: yps:YPTB0668 MFS family transporter, sugar efflux pump YP_659982.1 KEGG: son:SO1695 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein; SMART: PAS YP_659983.1 KEGG: pfl:PFL_1302 hypothetical protein YP_659984.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: vch:VC1061 cysteine synthase/cystathionine beta-synthase family protein YP_659986.1 PFAM: transcriptional regulatory protein-like; KEGG: son:SO1699 transcriptional regulator YP_659987.1 PFAM: acriflavin resistance protein; KEGG: pha:PSHAa2957 multidrug resistance protein, AcrB/AcrD/AcrF YP_659988.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: pha:PSHAa2958 multidrug resistance protein YP_659989.1 PFAM: peptidase M28; KEGG: pha:PSHAa1017 hypothetical protein YP_659990.1 KEGG: eli:ELI_10435 hypothetical protein YP_659991.1 TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF167; KEGG: vfi:VF0427 hypothetical protein YP_659992.1 KEGG: lpp:lpp1627 hypothetical protein YP_659993.1 PFAM: regulatory proteins, AsnC/Lrp; KEGG: ccr:CC2887 transcriptional regulator, AsnC family YP_659994.1 KEGG: plu:plu1434 hypothetical protein YP_659995.1 PFAM: aminotransferase, class V; KEGG: pha:PSHAa0055 pyridoxal phosphate dependent enzyme YP_659996.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: pha:PSHAb0059 putative hydrolase/phosphatase protein YP_659997.1 KEGG: pha:PSHAb0233 hypothetical protein YP_659998.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ilo:IL2177 outer membrane protein YP_659999.1 PFAM: oxidoreductase FAD/NAD(P)-binding Oxidoreductase FAD-binding region FAD-binding 9, siderophore-interacting; KEGG: ppr:PBPRA0238 hypothetical ferredoxin-NADP reductase YP_660000.1 KEGG: tcx:Tcr_1008 hypothetical protein YP_660001.1 TIGRFAM: uroporphyrin-III C-methyltransferase siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: nmu:Nmul_A2313 uroporphyrin-III C-methyltransferase YP_660002.1 PFAM: helicase-like DbpA, RNA-binding DEAD/DEAH box helicase-like; KEGG: tcx:Tcr_2009 DEAD/DEAH box helicase-like YP_660003.1 PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: cps:CPS_0309 TPR domain protein YP_660004.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: cps:CPS_2236 thioredoxin YP_660005.1 PFAM: Ion transport protein; KEGG: ilo:IL1436 Kef-type K+ transport system, NAD-binding component YP_660006.1 PFAM: Haem oxygenase; KEGG: dra:DRA0052m heme oxygenase YP_660007.1 PFAM: GAF ATP-binding region, ATPase-like histidine kinase A-like Phytochrome, central region PAS fold-2; KEGG: ana:all2899 phytochrome-like protein, two-component sensor YP_660008.1 PFAM: response regulator receiver; KEGG: pha:PSHAa2395 two-component response regulator YP_660009.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: atc:AGR_pAT_199 hypothetical protein YP_660010.1 PFAM: thioesterase superfamily; KEGG: pfl:PFL_0291 thioesterase family protein domain protein YP_660011.1 PFAM: hydroxymethylglutaryl-coenzyme A reductase; KEGG: nph:NP0368A hydroxymethylglutaryl-CoA reductase (NADPH) 1 YP_660012.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: aci:ACIAD1498 7-Fe ferredoxin YP_660013.1 PFAM: FAD dependent oxidoreductase FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pha:PSHAb0412 putative uncharacterized dehydrogenase YP_660014.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: son:SO3904 outer membrane protein TolC YP_660015.1 KEGG: vfi:VF2232 ADP-ribose pyrophosphatase; TIGRFAM: Nucleoside diphosphate pyrophosphatase; PFAM: NUDIX hydrolase YP_660016.1 PFAM: protein of unknown function DUF1249; KEGG: yps:YPTB3398 hypothetical protein YP_660017.1 PFAM: metallophosphoesterase; KEGG: pfo:Pfl_0497 metallophosphoesterase YP_660018.1 PFAM: protein of unknown function UPF0227; KEGG: vpa:VP0429 hypothetical protein YP_660019.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_660020.1 KEGG: tbd:Tbd_0773 hypothetical protein YP_660021.1 PFAM: small multidrug resistance protein; KEGG: reu:Reut_A2364 small multidrug resistance protein YP_660022.1 KEGG: pha:PSHAa0471 hypothetical protein YP_660024.1 TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM; KEGG: vch:VC2661 hypothetical protein YP_660025.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_660026.1 TIGRFAM: lysyl-tRNA synthetase-related protein GenX; PFAM: tRNA synthetase, class II (D, K and N); KEGG: spt:SPA4161 lysyl-tRNA synthetase YP_660027.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: ilo:IL2366 signaling protein with a acyltransferase and GGDEF domains YP_660028.1 KEGG: dar:Daro_0236 hypothetical protein YP_660029.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_04390 acetyltransferase, including N-acetylases of ribosomal protein YP_660030.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: ilo:IL1866 peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family YP_660031.1 PFAM: methyltransferase small Methyltransferase type 11; KEGG: pha:PSHAa2245 ribosomal RNA small subunit methyltransferase D YP_660032.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: vvy:VVA0455 alkylated DNA repair protein YP_660033.1 PFAM: BolA-like protein; KEGG: ppr:PBPRA0820 putative cell division protein BolA YP_660034.1 PFAM: protein of unknown function UPF0057; KEGG: dps:DP1039 hypothetical protein YP_660035.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity YP_660036.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_660037.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_660038.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_660039.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm YP_660040.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. YP_660041.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_660042.1 PFAM: ApbE-like lipoprotein; KEGG: vch:VC2289 thiamin biosynthesis lipoprotein ApbE YP_660043.1 PFAM: protein of unknown function DUF539; KEGG: ilo:IL1043 uncharacterized conserved membrane or secreted protein YP_660044.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_660045.1 PFAM: protein of unknown function DUF1653; KEGG: psp:PSPPH_3208 hypothetical protein YP_660046.1 PFAM: beta-lactamase-like; KEGG: ilo:IL0617 Zn-dependent hydrolase, glyoxylase family YP_660047.1 PFAM: Amidohydrolase 3; KEGG: ilo:IL1207 predicted metal-dependent amidohydrolase with the TIM-barrel fold YP_660048.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_660049.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: son:SO2197 GGDEF family protein YP_660050.1 PFAM: amidohydrolase WD40-like beta Propeller; KEGG: pha:PSHAa1171 hypothetical protein YP_660051.1 PFAM: type II secretion system protein E GAF; SMART: ATPase; KEGG: neu:NE2290 bacterial type II secretion system protein E:GAF domain YP_660052.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_660053.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_660054.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_660055.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_660056.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_660057.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: vpa:VP0261 ribosomal protein S19 YP_660058.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_660059.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_660060.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_660061.1 one of the stabilizing components for the large ribosomal subunit YP_660062.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_660063.1 PFAM: peptidase S41; KEGG: pha:PSHAa0289 hypothetical protein YP_660064.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: rru:Rru_A3374 putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain YP_660065.1 PFAM: Catalase-like; KEGG: rru:Rru_A2489 catalase YP_660066.1 PFAM: Paraquat-inducible protein A; KEGG: son:SO4710 hypothetical protein YP_660067.1 KEGG: xac:XAC3767 hypothetical protein YP_660068.1 KEGG: vch:VC2456 hypothetical protein YP_660070.1 TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase-like amino acid-binding ACT; KEGG: pfl:PFL_4786 formyltetrahydrofolate deformylase YP_660071.1 TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: eca:ECA3315 2'-5' RNA ligase YP_660072.1 TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase-like DEAD/DEAH box helicase-like Helicase ATP-dependent-like; KEGG: hch:HCH_05855 ATP-dependent helicase HrpB YP_660073.1 KEGG: cps:CPS_4301 penicillin-binding protein; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase, family 51 penicillin-binding protein, transpeptidase YP_660074.1 KEGG: sma:SAV4404 hypothetical protein YP_660075.1 PFAM: nitrogen regulatory protein P-II; KEGG: vvy:VV2748 nitrogen regulatory protein PII YP_660076.1 PFAM: Rh-like protein/ammonium transporter; KEGG: cps:CPS_0642 putative ammonium transporter YP_660077.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: cps:CPS_4479 putative melanin biosynthesis protein TyrA YP_660078.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase Tetratricopeptide TPR_2; KEGG: lic:LIC20094 adenylate/guanylate cyclase YP_660079.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_660080.1 Catalyzes the conversion of carbamoyl phosphate and l-aspartate to yield orthophosphate and n-carbamoyl-l-aspartate YP_660081.1 PFAM: lipolytic enzyme, G-D-S-L; KEGG: bur:Bcep18194_A3328 hypothetical protein YP_660082.1 PFAM: peptidase M12A, astacin peptidase M10A and M12B, matrixin and adamalysin; SMART: Peptidase, metallopeptidases; KEGG: sco:SCO6992 regulatory protein YP_660083.1 PFAM: regulatory proteins, AsnC/Lrp; KEGG: sil:SPO3612 transcriptional regulator, AsnC family YP_660084.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sil:SPO3613 transporter, LysE family YP_660085.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: cvi:CV0705 probable FkbP-type peptidyl-prolyl cis-trans isomerase YP_660086.1 KEGG: nar:Saro_0460 hypothetical protein YP_660088.1 KEGG: hch:HCH_04317 PPE-repeat protein YP_660089.1 KEGG: son:SO1658 hypothetical protein YP_660090.1 PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt Diverse 7TM receptor, transmembrane region; KEGG: son:SO3457 sensor histidine kinase/response regulator YP_660091.1 KEGG: pha:PSHAa2586 L-sorbosone dehydrogenase (SNDH) YP_660092.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_660093.1 PFAM: Carboxylesterase, type B; KEGG: sma:SAV433 putative carboxylesterase YP_660094.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: pha:PSHAa0177 hypothetical protein YP_660095.1 PFAM: regulatory proteins, AsnC/Lrp; KEGG: cps:CPS_3819 transcriptional regulator, AsnC family YP_660096.1 PFAM: peptidase M23B Opacity-associated protein A Opacity-associated protein A-like; KEGG: ilo:IL2237 peptidase, M23/M37 family YP_660097.1 TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; KEGG: cps:CPS_4727 tyrosyl-tRNA synthetase YP_660098.1 KEGG: son:SO1320 hypothetical protein YP_660100.1 PFAM: cobalamin biosynthesis protein CbiB; KEGG: cps:CPS_4742 CobD/CbiB family protein YP_660101.1 PFAM: purine and other phosphorylases, family 1; KEGG: vpa:VP0479 MTA/SAH nucleosidase YP_660102.1 KEGG: pha:PSHAa0696 hypothetical protein YP_660103.1 PFAM: histidine kinase, HAMP region chemotaxis sensory transducer Cache, type 2; KEGG: vpa:VPA0024 methyl-accepting chemotaxis protein YP_660104.1 TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: pha:PSHAa0698 acetyl-coenzyme A synthetase (acetate--CoA ligase) (acyl-activating enzyme) YP_660105.1 PFAM: regulatory protein, LuxR response regulator receiver; KEGG: pha:PSHAa0699 regulator in two-component regulatory system ; LuxR YP_660106.1 TIGRFAM: PAS sensor protein; PFAM: Na+/solute symporter response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: pha:PSHAa0585 sensory box histidine kinase/response regulator YP_660107.1 KEGG: pha:PSHAa0586 hypothetical protein YP_660108.1 PFAM: Na+/solute symporter; KEGG: ilo:IL1178 Na+/solute symporter, Ssf family YP_660109.1 PFAM: Domain of unknown function DUF1745; KEGG: cps:CPS_0128 hypothetical protein YP_660110.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: tbd:Tbd_1042 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(s) YP_660111.1 PFAM: CBS domain containing protein protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: pha:PSHAa0588 inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) YP_660112.1 PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: cps:CPS_4955 DNA polymerase III epsilon subunit YP_660113.1 PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: cps:CPS_2703 TPR domain protein YP_660114.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: ppr:PBPRB0800 putative oxidoreductase iron/ascorbatefamily YP_660115.1 TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter nucleoside recognition Na+ dependent nucleoside transporter-like; KEGG: son:SO1214 NupC family protein YP_660116.1 TIGRFAM: uridine kinase; PFAM: phosphoribulokinase/uridine kinase; KEGG: cps:CPS_1974 uridine kinase YP_660117.1 KEGG: pha:PSHAb0344 hypothetical protein YP_660118.1 KEGG: pha:PSHAb0343 hypothetical protein YP_660119.1 KEGG: ilo:IL0583 Oar-like outer membrane protein protein, OmpA family YP_660120.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: cps:CPS_1964 endonuclease/exonuclease/phosphatase family protein YP_660121.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes YP_660122.1 oxidizes malate to oxaloacetate YP_660123.1 KEGG: cps:CPS_4785 hypothetical protein YP_660125.1 KEGG: pst:PSPTO3908 hypothetical protein YP_660126.1 KEGG: hsa:1834 dentin sialophosphoprotein YP_660127.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF; KEGG: pmu:PM0458 hypothetical HI1723 YP_660128.1 KEGG: ilo:IL2241 uncharacterized conserved membrane or secreted protein YP_660129.1 PFAM: Cl- channel, voltage gated; KEGG: pha:PSHAa2252 voltage-gated ClC-type chloride channel ClcA YP_660130.1 PFAM: conserved hypothetical protein 701; KEGG: ilo:IL2243 hypothetical protein YP_660131.1 PFAM: GTP cyclohydrolase I; KEGG: psp:PSPPH_1071 GTP cyclohydrolase I YP_660132.1 PFAM: purine and other phosphorylases, family 1; KEGG: ccr:CC2266 5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase YP_660133.1 PFAM: protein of unknown function DUF28; KEGG: vch:VCA0006 hypothetical protein YP_660134.1 PFAM: AFG1-like ATPase; KEGG: cps:CPS_4344 ATPase, AFG1 family YP_660135.1 KEGG: ilo:IL0412 hypothetical protein YP_660136.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap PDZ/DHR/GLGF; KEGG: son:SO3942 serine protease, HtrA/DegQ/DegS family YP_660137.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap PDZ/DHR/GLGF; KEGG: cps:CPS_4347 serine protease DegS YP_660138.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_660139.1 PFAM: BolA-like protein; KEGG: sgl:SG0210 hypothetical protein YP_660140.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: vpa:VP2660 putative anti-sigma B factor antagonist YP_660141.1 PFAM: toluene tolerance; KEGG: vpa:VP2661 hypothetical protein YP_660142.1 PFAM: Mammalian cell entry related; KEGG: cps:CPS_4534 mce family protein YP_660143.1 PFAM: protein of unknown function DUF140; KEGG: ilo:IL0404 ABC-type transport system involved in resistance to organic solvents, permease component YP_660144.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: pha:PSHAa2544 transport protein (ABC superfamily, atp-binding) YP_660145.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: pha:PSHAa2545 Na:Ca transport protein (CacA) YP_660146.1 KEGG: pha:PSHAa2546 D-arabinose 5-phosphate isomerase; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein sugar isomerase (SIS) YP_660147.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: cps:CPS_4539 phosphatase, YrbI family YP_660148.1 PFAM: protein of unknown function DUF1239; KEGG: pha:PSHAa2548 hypothetical protein YP_660149.1 PFAM: OstA-like protein; KEGG: ilo:IL0398 hypothetical protein YP_660150.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: ilo:IL0397 unclassified ABC-type transport system, ATPase component YP_660151.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor sigma-54 factor, core-binding region sigma-54, DNA-binding; KEGG: cps:CPS_4543 RNA polymerase sigma-54 factor YP_660152.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: ilo:IL0395 S30EA ribosomal protein YP_660153.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: vfi:VF0385 nitrogen regulatory IIA protein YP_660154.1 PFAM: Uncharacterised P-loop ATPase protein UPF0042; KEGG: cps:CPS_4546 conserved hypothetical protein YP_660155.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: pha:PSHAa2555 phosphocarrier protein NPr (HPr-like), nitrogen-related YP_660156.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: stm:STM1330 putative DNA/RNA non-specific endonuclease YP_660157.1 PFAM: ApbE-like lipoprotein; KEGG: cps:CPS_2787 ApbE family protein YP_660158.1 KEGG: cps:CPS_2788 hypothetical protein YP_660159.1 KEGG: cps:CPS_2789 putative lipoprotein YP_660160.1 PFAM: Redoxin; KEGG: son:SO2100 thioredoxin family protein YP_660161.1 PFAM: peptidase M28 Nicastrin; KEGG: hch:HCH_01980 predicted aminopeptidase YP_660162.1 PFAM: Helix-turn-helix, type 11; KEGG: pha:PSHAb0510 putative transcriptional regulator ArsR family YP_660163.1 PFAM: Lipocalin-like; KEGG: cps:CPS_2173 lipoprotein Blc YP_660164.1 KEGG: cps:CPS_0796 hypothetical protein YP_660165.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: bcz:pE33L466_0444 alkylphosphonate uptake protein YP_660166.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: cps:CPS_0797 putative hemolysin YP_660167.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_660168.1 KEGG: bba:Bd2855 putative ABC amino acid transporter solute binding protein YP_660169.1 KEGG: hch:HCH_05423 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain YP_660170.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_660171.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA YP_660173.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: bha:BH1938 unknown conserved protein in others YP_660174.1 PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase; KEGG: vfi:VFA0509 multidrug resistance ABC transporter ATP-binding and permease protein YP_660175.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: ilo:IL0339 preprotein translocase subunit SecE YP_660176.1 KEGG: cps:CPS_4777 transcription termination/antitermination factor NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG KOW; SMART: NGN KOW (Kyrpides, Ouzounis, Woese) motif YP_660177.1 PFAM: ribosomal protein L11; KEGG: cps:CPS_4773 ribosomal protein L11 YP_660178.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_660179.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_660180.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_660181.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_660182.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_660183.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_660184.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_660185.1 TIGRFAM: translation elongation factor G small GTP-binding protein; PFAM: elongation factor G-like protein synthesis factor, GTP-binding elongation factor Tu, domain 2 elongation factor G, domain IV; KEGG: son:SO0228 elongation factor EF-G YP_660186.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_660187.1 PFAM: histidine kinase, HAMP region chemotaxis sensory transducer; KEGG: son:SO4454 methyl-accepting chemotaxis protein YP_660188.1 PFAM: protein of unknown function UPF0029; KEGG: yps:YPTB0269 hypothetical protein YP_660189.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_660190.1 PFAM: FKBP-type peptidyl-prolyl isomerase-like peptidylprolyl isomerase, FKBP-type; KEGG: pha:PSHAa1414 FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase) YP_660191.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS Xanthine/uracil/vitamin C permease sulphate transporter; KEGG: ppr:PBPRA1185 putative sulfate permease family protein YP_660193.1 PFAM: TrkA-N sodium/hydrogen exchanger; KEGG: cps:CPS_2306 putative glutathione-regulated potassium-efflux system protein YP_660194.1 PFAM: alpha/beta hydrolase fold; KEGG: ilo:IL1807 alpha/beta superfamily hydrolase YP_660195.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: cps:CPS_1844 conserved hypothetical protein TIGR00427 YP_660196.1 TIGRFAM: yecA family protein YP_660197.1 KEGG: vvu:VV12887 hypothetical protein YP_660198.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: pha:PSHAa2463 hypothetical protein YP_660199.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: ssp:SSP0251 O-acetylhomoserine sulfhydrylase YP_660200.1 TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase-like DEAD/DEAH box helicase-like; KEGG: pha:PSHAb0119 putative helicase (RecQ-like) YP_660201.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: cps:CPS_4621 efflux transporter, RND family, MFP subunit YP_660202.1 PFAM: acriflavin resistance protein; KEGG: cps:CPS_4620 AcrB/AcrD/AcrF family protein YP_660203.1 PFAM: glutathione S-transferase-like; KEGG: pha:PSHAa2489 glutathione S-transferase enzyme with thioredoxin-like domain YP_660204.1 PFAM: protein of unknown function DUF1244; KEGG: ppu:PP4633 hypothetical protein YP_660205.1 KEGG: cvi:CV2486 hypothetical protein YP_660206.1 PFAM: protein of unknown function DUF413; KEGG: ilo:IL2294 hypothetical protein YP_660207.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme, central region thiamine pyrophosphate enzyme-like TPP binding region; KEGG: ppr:PBPRA0425 putative acetolactate synthase III, largesubunit YP_660208.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT; KEGG: cps:CPS_3237 acetolactate synthase III, small subunit YP_660209.1 PFAM: thymidine kinase; KEGG: vvy:VV1363 thymidine kinase YP_660210.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: cps:CPS_1138 GGDEF/EAL domain protein YP_660211.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: son:SO2852 transcriptional regulator, GntR family YP_660212.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; KEGG: xac:XAC4292 benzoate transporter YP_660213.1 PFAM: Bile acid:sodium symporter; KEGG: syn:sll1428 P3 protein YP_660214.1 KEGG: mag:amb2748 hypothetical protein YP_660215.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ilo:IL1485 short chain dehydrogenase family protein YP_660216.1 PFAM: Phosphoglycerate mutase; KEGG: aci:ACIAD1884 putative phosphoglycerate mutase related protein YP_660217.1 PFAM: aminoglycoside phosphotransferase; KEGG: ilo:IL1486 predicted aminoglycoside phosphotransferase YP_660218.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: ilo:IL1487 acyl-CoA dehydrogenase YP_660219.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: reu:Reut_A1003 regulatory protein, LysR:LysR, substrate-binding YP_660220.1 PFAM: Rh-like protein/ammonium transporter; KEGG: ppr:PBPRB0379 putative ammonium permease YP_660221.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin putative Ig; KEGG: bja:bll2294 putative alkaline protease YP_660223.1 KEGG: cps:CPS_2782 hypothetical protein YP_660224.1 KEGG: cps:CPS_2783 putative membrane protein YP_660225.1 KEGG: cps:CPS_2784 hypothetical protein YP_660226.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: cps:CPS_2785 sensor histidine kinase YP_660227.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: cps:CPS_2786 response regulator YP_660228.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein MgtE integral membrane region MgtE intracellular region; KEGG: ilo:IL0391 Mg/Co/Ni transporter MgtE (contains CBS domain) YP_660229.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: eba:ebA4464 hypothetical protein YP_660230.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism YP_660231.1 catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P YP_660232.1 PFAM: aldehyde dehydrogenase; KEGG: cps:CPS_0634 succinylglutamic semialdehyde dehydrogenase YP_660233.1 PFAM: arginine N-succinyltransferase beta subunit; KEGG: cps:CPS_0635 arginine N-succinyltransferase YP_660234.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate YP_660235.1 KEGG: pha:PSHAa0193 hypothetical protein YP_660236.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: mta:Moth_1341 glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase YP_660237.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: hch:HCH_03950 electron transfer flavoprotein, beta subunit YP_660238.1 PFAM: electron transfer flavoprotein beta-subunit electron transfer flavoprotein, alpha subunit; KEGG: psp:PSPPH_1965 electron transfer flavoprotein, alpha subunit YP_660239.1 PFAM: acyl-CoA dehydrogenase-like; KEGG: cvi:CV3816 probable acyl-CoA dehydrogenase YP_660240.1 PFAM: helix-turn-helix, AraC type; KEGG: pfl:PFL_4468 transcriptional regulator, AraC family YP_660241.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_660242.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: son:SO0292 ribulose-phosphate 3-epimerase YP_660243.1 TIGRFAM: conserved hypothetical protein; KEGG: pha:PSHAa2824 hypothetical protein YP_660244.1 KEGG: son:SO0291 hypothetical protein YP_660245.1 KEGG: son:SO0290 hypothetical protein YP_660246.1 KEGG: vfi:VF2289 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase YP_660247.1 KEGG: vfi:VF2290 DamX protein YP_660248.1 PFAM: 3-dehydroquinate synthase; KEGG: cps:CPS_0473 3-dehydroquinate synthase YP_660249.1 type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_660250.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein NolW-like Secretin/TonB, short N-terminal; KEGG: son:SO0285 type IV pilus biogenesis protein PilQ YP_660251.1 PFAM: Pilus assembly protein, PilQ; KEGG: cps:CPS_0470 type IV pilus biogenesis protein PilP YP_660252.1 PFAM: Pilus assembly protein, PilO; KEGG: cps:CPS_0469 type IV pilus biogenesis protein PilO YP_660253.1 PFAM: Fimbrial assembly; KEGG: pha:PSHAa2719 type IV pilus biogenesis protein PilN YP_660254.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: pha:PSHAa2720 type IV pilus biogenesis protein PilM YP_660255.1 PFAM: phage integrase; KEGG: vpa:VP0380 putative integrase YP_660256.1 KEGG: gsu:GSU2774 hypothetical protein YP_660259.1 KEGG: yps:YPTB1873 hypothetical protein YP_660260.1 PFAM: helix-turn-helix motif YP_660261.1 KEGG: son:SO2988 hypothetical protein YP_660262.1 PFAM: Prophage CP4-57 regulatory YP_660264.1 PFAM: DNA methylase N-4/N-6; KEGG: vch:VCA0447 hemagglutinin associated protein YP_660268.1 KEGG: bce:BC1874 phage protein YP_660269.1 KEGG: tde:TDE1153 hypothetical protein YP_660270.1 PFAM: bacteriophage replication gene A; KEGG: spt:SPA2623 putative phage gene YP_660274.1 PFAM: phage transcriptional activator, Ogr/delta; KEGG: spt:SPA2622 putative phage gene YP_660276.1 TIGRFAM: phage portal protein, PBSX family; PFAM: phage portal protein; KEGG: hch:HCH_00397 phage portal protein, PBSX family YP_660277.1 PFAM: protein of unknown function DUF264 putative terminase ATPase subunit; KEGG: hch:HCH_00396 Mu-like prophage FluMu protein GP28 YP_660278.1 PFAM: phage capsid scaffolding; KEGG: hch:HCH_00395 flagellar biosynthesis/type III secretory pathway protein YP_660279.1 TIGRFAM: phage major capsid protein, P2 family; PFAM: phage major capsid protein, P2; KEGG: hch:HCH_06766 phage major capsid protein, P2 family YP_660280.1 KEGG: hch:HCH_00393 probable phage small terminate subunit YP_660281.1 KEGG: psp:PSPPH_4967 prophage PSPPH06, putative head completion/stabilization protein YP_660282.1 KEGG: psp:PSPPH_4966 prophage PSPPH06, putative tail protein YP_660283.1 KEGG: hch:HCH_00390 probable phage protein YP_660284.1 KEGG: hch:HCH_06772 probable phage protein YP_660285.1 KEGG: psp:PSPPH_4963 prophage PSPPH06, putative tail tube protein YP_660286.1 KEGG: hch:HCH_06774 hypothetical protein YP_660287.1 KEGG: hch:HCH_00385 hypothetical protein YP_660288.1 KEGG: hch:HCH_04562 hypothetical protein YP_660289.1 KEGG: hch:HCH_00383 probable phage protein YP_660291.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: hch:HCH_00382 probable phage protein YP_660294.1 KEGG: tdn:Tmden_1716 hemolysin-type calcium-binding region YP_660295.1 KEGG: hch:HCH_00381 probable phage protein YP_660296.1 KEGG: hch:HCH_00380 uncharacterized phage Mu protein GP47-like protein YP_660297.1 KEGG: yps:YPTB3156 putative bacteriophage protein YP_660298.1 KEGG: pst:PSPTO4006 tail fiber protein H, putative YP_660301.1 KEGG: yps:YPTB3159 possible bacteriophage protein YP_660302.1 KEGG: hch:HCH_06785 probable phage protein YP_660303.1 KEGG: hch:HCH_00374 hypothetical protein YP_660304.1 KEGG: hch:HCH_06787 hypothetical protein YP_660305.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51 penicillin-binding protein, transpeptidase; KEGG: vpa:VP2751 penicillin-binding protein 1A YP_660306.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate YP_660307.1 PFAM: phage integrase; KEGG: vpa:VP0643 hypothetical protein YP_660309.1 KEGG: vch:VCA0198 site-specific DNA-methyltransferase, putative; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase YP_660310.1 KEGG: son:SO3886 hypothetical protein YP_660311.1 PFAM: AAA ATPase, central region; SMART: ATPase; KEGG: son:SO3885 ATPase, AAA family YP_660312.1 PFAM: phage integrase; KEGG: son:SO3884 site-specific recombinase, phage integrase family YP_660314.1 PFAM: UvrD/REP helicase; KEGG: mpn:MPN340 DNA helicase PcrA YP_660315.1 KEGG: cps:CPS_0493 hypothetical protein YP_660317.1 KEGG: lic:LIC13331 histidine kinase sensor protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold; SMART: PAS PAC motif YP_660318.1 PFAM: regulatory protein, TetR; KEGG: hch:HCH_03535 transcriptional regulator YP_660319.1 KEGG: hch:HCH_03536 predicted Zn-dependent hydrolase of the beta-lactamase fold YP_660320.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pca:Pcar_1100 hypothetical protein YP_660321.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: lpn:lpg2177 HlyD family secretion protein YP_660322.1 KEGG: cps:CPS_0457 hypothetical protein YP_660323.1 KEGG: pha:PSHAb0131 putative thioredoxin family protein YP_660324.1 PFAM: OsmC-like protein; KEGG: eli:ELI_14070 osmotically inducible protein C YP_660325.1 PFAM: regulatory protein, TetR; KEGG: wsu:WS0767 transcription regulator protein YP_660326.1 PFAM: secretion protein HlyD; KEGG: rru:Rru_A0156 secretion protein HlyD YP_660327.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: atc:AGR_L_781 multidrug resistance protein B YP_660328.1 KEGG: pha:PSHAa1583 peptide methionine sulfoxide reductase MsrA 2 (protein-methionine-S-oxide reductase 2) (peptide Met(O) reductase 2); TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A YP_660329.1 TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: ilo:IL2000 carboxynorspermidine decarboxylase YP_660330.1 PFAM: Saccharopine dehydrogenase; KEGG: ilo:IL1999 carboxynorspermidine dehydrogenase YP_660331.1 KEGG: hch:HCH_06873 predicted membrane protein YP_660332.1 KEGG: hch:HCH_06994 predicted ATPase/kinase involved in NAD metabolism YP_660333.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: hch:HCH_06995 nicotinamide mononucleotide transporter YP_660334.1 PFAM: Kelch repeat Kelch; KEGG: mmu:50868 kelch-like ECH-associated protein 1 YP_660335.1 KEGG: pha:PSHAa2700 D-cysteine desulfhydrase, PLP-dependent enzyme YP_660336.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: rpb:RPB_4536 diguanylate cyclase YP_660337.1 KEGG: cps:CPS_2539 ZIP zinc transporter family protein YP_660338.1 KEGG: lpf:lpl2164 hypothetical protein YP_660339.1 PFAM: MscS Mechanosensitive ion channel; KEGG: sil:SPO3437 mechanosensitive ion channel family protein YP_660340.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol YP_660341.1 KEGG: vfi:VF1334 oxalate/formate antiporter YP_660343.1 PFAM: regulatory protein, LuxR; KEGG: mlo:mll4526 transcriptional regulatory YP_660344.1 KEGG: rba:RB11490 conserved hypothetical protein-putative transmembrane protein YP_660346.1 PFAM: BLUF domain containing protein; KEGG: tel:tll0078 hypothetical protein YP_660347.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: cps:CPS_3608 sensor histidine kinase YP_660348.1 PFAM: Catalase-related Catalase-like; KEGG: noc:Noc_1165 catalase YP_660349.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: eli:ELI_00460 TonB-dependent receptor YP_660350.1 PFAM: sulfotransferase TPR repeat; SMART: Tetratricopeptide region; KEGG: eli:ELI_00455 TPR domain protein YP_660351.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_CH03352 probable 3-oxoacyl-[acyl-carrier-protein] reductase protein YP_660352.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:bll6834 probable ABC transporter substrate-binding protein YP_660353.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: bja:bll6833 probable ABC transporter permease protein YP_660354.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bja:bll6832 probable ABC transporter permease protein YP_660355.1 PFAM: helix-turn-helix, AraC type; KEGG: vvy:VVA1522 AraC-type DNA-binding domain-containing protein YP_660356.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: vvu:VV21027 permease of the drug/metabolite transporter (DMT) superfamily YP_660357.1 TIGRFAM: PEP motif putative anchor-like; PFAM: protein of unknown function DUF1555 YP_660358.1 decatenates replicating daughter chromosomes YP_660359.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rba:RB1828 hypothetical protein-signal peptide and transmembrane prediction YP_660360.1 KEGG: rba:RB2404 hypothetical protein-transmembrane prediction YP_660361.1 PFAM: Mannitol dehydrogenase-like Mannitol dehydrogenase rossman-like; KEGG: rba:RB2403 D-mannonate oxidoreductase YP_660362.1 KEGG: son:SO2189 conserved hypothetical protein YP_660363.1 KEGG: aae:aq_1923 putative protein YP_660364.1 KEGG: pha:PSHAa2197 hypothetical protein YP_660365.1 KEGG: pha:PSHAa2198 hypothetical protein YP_660366.1 PFAM: metallophosphoesterase; KEGG: oih:OB0802 hypothetical protein YP_660367.1 PFAM: TonB-dependent receptor Secretin/TonB, short N-terminal TonB-dependent receptor, plug; KEGG: nar:Saro_0250 TonB-dependent receptor YP_660368.1 PFAM: FecR protein; KEGG: ppu:PP0866 transmembrane sensor, putative YP_660369.1 PFAM: sigma-70 region 2 Sigma-70, region 4 type 2; KEGG: pfo:Pfl_4345 sigma-24 (FecI) YP_660372.1 TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: ret:RHE_CH00191 cytidine deaminase protein YP_660373.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing YP_660374.1 KEGG: pha:PSHAa1003 hypothetical protein YP_660375.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_660376.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3 beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: vvy:VVA1076 CbbY family protein YP_660377.1 PFAM: sulfatase; KEGG: rba:RB200 mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase) YP_660378.1 PFAM: Helix-turn-helix, type 11; SMART: regulatory proteins, IclR; KEGG: xcv:XCV4290 transcriptional regulator, IclR family YP_660379.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: bcl:ABC0438 Zn-dependent alcohol dehydrogenase YP_660380.1 PFAM: amidohydrolase 2; KEGG: rba:RB9860 hypothetical protein YP_660381.1 PFAM: aldo/keto reductase; KEGG: ath:At4g33670 L-galactose dehydrogenase (L-GalDH) YP_660382.1 PFAM: D-galactarate dehydratase/Altronate hydrolase-like; KEGG: ccr:CC1488 altronate hydrolase YP_660383.1 TIGRFAM: L-fucose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: hit:NTHI0865 L-fucose permease YP_660384.1 PFAM: tryptophan halogenase; KEGG: eli:ELI_03185 tryptophan halogenase, putative YP_660385.1 PFAM: FAD dependent oxidoreductase tryptophan halogenase; KEGG: eli:ELI_03185 tryptophan halogenase, putative YP_660386.1 PFAM: glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, TIM barrel glycoside hydrolase family 2, sugar binding; KEGG: xcv:XCV4356 beta-galactosidase YP_660387.1 PFAM: glycoside hydrolase, family 16; KEGG: pfo:Pfl_2825 glycoside hydrolase, family 16 YP_660389.1 PFAM: tryptophan halogenase; KEGG: pha:PSHAa1353 tryptophan halogenase YP_660390.1 PFAM: Ig-like, group 2; KEGG: ctc:CTC00747 putative surface/cell-adhesion protein, multiple big2 domain YP_660391.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_2359 TonB-dependent receptor YP_660392.1 PFAM: Carbohydrate binding family 6 glycoside hydrolase, family 43; SMART: Cellulose binding, type IV; KEGG: bth:BT1781 xylosidase/arabinosidase YP_660393.1 PFAM: protein of unknown function DUF1080; KEGG: ccr:CC1082 hypothetical protein YP_660394.1 KEGG: sco:SCO3481 hypothetical protein YP_660395.1 KEGG: ilo:IL1417 outer membrane protein, porin family YP_660396.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: protein of unknown function DUF1501; KEGG: rba:RB9886 hypothetical protein-putative related to sulfatases YP_660397.1 PFAM: Planctomycete cytochrome C protein of unknown function DUF1549; KEGG: rba:RB7229 hypothetical protein-signal peptide and transmembrane prediction YP_660398.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rba:RB9882 similar to peptidylglycine monooxygenase YP_660399.1 KEGG: rba:RB12097 hypothetical protein-signal peptide prediction YP_660400.1 PFAM: helix-turn-helix, AraC type; KEGG: bth:BT3667 transcriptional regulator YP_660401.1 PFAM: sulfatase; KEGG: bth:BT3333 arylsulfatase A precursor (ASA) YP_660402.1 PFAM: sulfatase; KEGG: rba:RB198 N-acetylgalactosamine-4-sulfatase precursor YP_660403.1 PFAM: glycoside hydrolase, family 42, domain 5, loop region glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, TIM barrel glycoside hydrolase family 2, sugar binding; KEGG: tma:TM1193 beta-galactosidase YP_660404.1 KEGG: xoo:XOO0340 hypothetical protein YP_660405.1 PFAM: glycoside hydrolase, family 29 (alpha-L-fucosidase); KEGG: rba:RB5816 alpha-L-fucosidase YP_660406.1 PFAM: glycoside hydrolase, family 16; KEGG: sco:SCO3471 extracellular agarase precursor YP_660407.1 PFAM: glycoside hydrolase, family 3-like; KEGG: bfs:BF0758 putative glycosyl hydrolase YP_660408.1 PFAM: sulfatase Ig-like, group 2; KEGG: rba:RB5305 arylsulphatase A YP_660409.1 PFAM: helix-turn-helix, AraC type; KEGG: bld:BLi03167 YtdP YP_660410.1 PFAM: lipolytic enzyme, G-D-S-L; KEGG: bth:BT4096 hypothetical protein YP_660411.1 PFAM: sulfatase; KEGG: rba:RB13148 iduronate-sulfatase or arylsulfatase A YP_660412.1 KEGG: bth:BT3132 sialic acid-specific 9-O-acetylesterase YP_660413.1 PFAM: glycoside hydrolase, family 29 (alpha-L-fucosidase); KEGG: rba:RB5816 alpha-L-fucosidase YP_660414.1 PFAM: glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, TIM barrel glycoside hydrolase family 2, sugar binding; KEGG: bth:BT0983 beta-galactosidase YP_660415.1 KEGG: rba:RB13259 hypothetical protein YP_660416.1 PFAM: Mannitol dehydrogenase-like Mannitol dehydrogenase rossman-like; KEGG: ccr:CC1487 mannitol 2-dehydrogenase YP_660417.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pha:PSHAa1768 sodium/hexose cotransport protein YP_660418.1 PFAM: PfkB; KEGG: pha:PSHAa1745 ketodeoxygluconokinase YP_660419.1 KEGG: bld:BLi03370 hypothetical protein YP_660421.1 PFAM: Ig-like, group 2; KEGG: rba:RB3421 probable beta-agarase [precursor] YP_660422.1 PFAM: transposase, IS111A/IS1328/IS1533 transposase IS116/IS110/IS902; KEGG: cps:CPS_2742 ISCps7, transposase YP_660424.1 PFAM: glycoside hydrolase, family 43; KEGG: bcl:ABC1148 xylosidase/arabinosidase YP_660425.1 PFAM: glycoside hydrolase, family 16; KEGG: rba:RB3123 probable glycosyl hydrolases-putative kappa-carrageenase precursor YP_660426.1 PFAM: Rieske [2Fe-2S] region; KEGG: pfl:PFL_3471 vanillate O-demethylase, oxygenase subunit YP_660427.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: ppu:PP3738 transcriptional regulator VanR, putative YP_660428.1 PFAM: regulatory protein, LysR; KEGG: ppu:PP3196 nodulation protein D1 YP_660429.1 PFAM: amidohydrolase 2; KEGG: sco:SCO6305 hypothetical protein YP_660430.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sma:SAV565 putative 2,3-dihydroxybiphenyl-1,2-dioxygenase YP_660431.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sco:SCO6308 hydrolase YP_660432.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: cps:CPS_4039 putative glutathione-independent formaldehyde dehydrogenase YP_660433.1 PFAM: helix-turn-helix, AraC type; KEGG: mlo:mlr1331 probable transcriptional regulator YP_660434.1 PFAM: Rieske [2Fe-2S] region; KEGG: sco:SCO6680 oxidoreductase alpha subunit YP_660435.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ppu:PP3196 nodulation protein D1 YP_660436.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ppu:PP3205 fumarylacetoacetate hydrolase family protein YP_660437.1 PFAM: putative cyclase; KEGG: ppu:PP3207 cyclase, putative YP_660438.1 KEGG: ppu:PP3195 hypothetical protein YP_660439.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:bll6427 hypothetical protein YP_660440.1 PFAM: Rieske [2Fe-2S] region; KEGG: bja:bll6426 hypothetical protein YP_660441.1 PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: bja:bll6425 hypothetical protein YP_660444.1 PFAM: transposase, IS111A/IS1328/IS1533 transposase IS116/IS110/IS902; KEGG: cps:CPS_2742 ISCps7, transposase YP_660445.1 PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase YP_660447.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_2088 TonB-dependent receptor YP_660448.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ppu:PP3196 nodulation protein D1 YP_660449.1 PFAM: Rieske [2Fe-2S] region; KEGG: rpb:RPB_1908 Rieske (2Fe-2S) protein YP_660450.1 PFAM: DoxX; KEGG: ret:RHE_CH02231 hypothetical conserved membrane protein YP_660451.1 PFAM: ferredoxin oxidoreductase FAD/NAD(P)-binding Oxidoreductase FAD-binding region; KEGG: pfl:PFL_3472 vanillate O-demethylase oxidoreductase YP_660452.1 PFAM: sulfatase; KEGG: pfo:Pfl_0208 sulfatase YP_660453.1 PFAM: Siderophore-interacting protein FAD-binding 9, siderophore-interacting; KEGG: rba:RB11489 vulnibactin utilization protein VIUB YP_660454.1 PFAM: glutathione S-transferase-like; KEGG: atc:AGR_C_1527 glutathione S-transferase YP_660455.1 PFAM: Carboxylesterase, type B; KEGG: tfu:Tfu_2427 putative carboxylesterase YP_660456.1 PFAM: major facilitator superfamily MFS_1; KEGG: ppu:PP3203 major facilitator family transporter YP_660457.1 PFAM: beta-lactamase-like; KEGG: xac:XAC2994 hydrolase YP_660460.1 PFAM: glycoside hydrolase, family 16; KEGG: rba:RB3123 probable glycosyl hydrolases-putative kappa-carrageenase precursor YP_660461.1 PFAM: sulfatase; KEGG: rba:RB6765 N-acetylgalactosamine 6-sulfate sulfatase (GALNS) YP_660462.1 KEGG: pha:PSHAb0050 hypothetical protein YP_660463.1 KEGG: bld:BLi02834 YrhK YP_660464.1 PFAM: protein of unknown function DUF1080; KEGG: ccr:CC1633 hypothetical protein YP_660466.1 PFAM: Ig-like, group 2; KEGG: cac:CAC3086 protein containing cell adhesion domain YP_660467.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_2359 TonB-dependent receptor YP_660468.1 PFAM: sulfatase; KEGG: sco:SCO7547 sulfatase YP_660469.1 PFAM: sulfatase; KEGG: rba:RB348 arylsulfatase B YP_660470.1 KEGG: rba:RB11088 similar to ASPIC YP_660471.1 PFAM: sulfatase; KEGG: rba:RB5424 iduronate-2-sulfatase YP_660472.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like; KEGG: bth:BT2458 putative pyridine nucleotide-disulphide oxidoreductase YP_660474.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mlo:mll7194 transcriptional regulator YP_660475.1 PFAM: sulfatase; KEGG: rba:RB348 arylsulfatase B YP_660476.1 PFAM: aldehyde dehydrogenase; KEGG: lmf:LMOf2365_0935 succinate-semialdehyde dehydrogenase YP_660477.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: sil:SPO2414 mandelate racemase/muconate lactonizing enzyme family protein YP_660478.1 PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: xcv:XCV1794 putative 2-oxo-3-deoxygalactonate kinase YP_660479.1 PFAM: KDPG and KHG aldolase; KEGG: pfo:Pfl_4124 KDPG and KHG aldolase YP_660480.1 TIGRFAM: sugar transporter; PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: bth:BT0436 arabinose-proton symporter YP_660481.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mlo:mll7194 transcriptional regulator YP_660483.1 KEGG: ppr:PBPRB1708 hypothetical transposase of Tn10 YP_660485.1 PFAM: regulatory protein, MerR; KEGG: hch:HCH_03406 predicted transcriptional regulator YP_660486.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ava:Ava_1011 short-chain dehydrogenase/reductase SDR YP_660487.1 PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAa2057 hypothetical protein YP_660488.1 KEGG: vvy:VV1797 hypothetical protein YP_660490.1 PFAM: protein of unknown function DUF1680; KEGG: rba:RB5313 conserved hypothetical protein-putative ATP binding protein YP_660491.1 KEGG: bba:Bd0328 rhs family protein YP_660492.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xac:XAC1178 oxidoreductase YP_660494.1 KEGG: eli:ELI_09215 hypothetical protein YP_660495.1 PFAM: protein of unknown function UPF0118; KEGG: xcb:XC_0080 hypothetical protein YP_660496.1 KEGG: bba:Bd0894 hypothetical protein YP_660497.1 KEGG: rpb:RPB_1618 hypothetical protein YP_660498.1 KEGG: rru:Rru_A3045 hypothetical protein YP_660499.1 KEGG: nmu:Nmul_A2305 hypothetical protein YP_660500.1 KEGG: vpa:VP1992 hypothetical protein YP_660501.1 catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate YP_660502.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: ccr:CC1570 hypothetical protein YP_660503.1 KEGG: pae:PA2095 hypothetical protein YP_660504.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: fnu:FN1280 endonuclease YP_660505.1 TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC Septum formation inhibitor MinC-like; KEGG: pst:PSPTO3872 septum site-determining protein MinC YP_660506.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pae:PA3244 cell division inhibitor MinD YP_660507.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_660508.1 PFAM: GCN5-related N-acetyltransferase; KEGG: plu:plu3536 unnamed protein product; some similarities with spermidine acetyltransferase YP_660509.1 PFAM: protein of unknown function DUF980; KEGG: cps:CPS_2687 hypothetical protein YP_660510.1 PFAM: peptidase S15 X-Pro dipeptidyl-peptidase-like; KEGG: lmo:lmo2755 similar to acylase and diesterase YP_660511.1 KEGG: gvi:glr1347 hypothetical protein YP_660512.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2973 secreted TonB-dependent receptor YP_660513.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ppr:PBPRB0504 hypothetical permease YP_660514.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: ppr:PBPRB0505 hypothetical immunogenic protein YP_660515.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2973 secreted TonB-dependent receptor YP_660516.1 PFAM: FecR protein; KEGG: cps:CPS_0244 putative regulatory protein YP_660517.1 PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: cps:CPS_0243 putative RNA polymerase sigma-70 factor FecI YP_660518.1 KEGG: cps:CPS_0903 hypothetical protein YP_660519.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC3461 TonB-dependent receptor YP_660520.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC3436 TonB-dependent receptor YP_660521.1 PFAM: peptidase M19, renal dipeptidase; KEGG: ccr:CC2746 dipeptidase YP_660522.1 KEGG: pha:PSHAb0144 conserved protein of unknown function ; putative secreted protein YP_660523.1 KEGG: hch:HCH_01288 hypothetical protein YP_660524.1 SMART: Rhodanese-like; KEGG: ilo:IL1695 rhodanese-related sulfurtransferase YP_660525.1 PFAM: protein of unknown function DUF81; KEGG: cef:CE0317 hypothetical protein YP_660526.1 PFAM: beta-lactamase-like; KEGG: cvi:CV0042 hypothetical protein YP_660527.1 PFAM: response regulator receiver; KEGG: pha:PSHAa1088 TPR motives YP_660528.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: son:SO1678 methylmalonate-semialdehyde dehydrogenase YP_660529.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: pha:PSHAa1456 acyl-CoA dehydrogenase protein YP_660530.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: cps:CPS_1607 enoyl-CoA hydratase/isomerase family protein YP_660531.1 KEGG: son:SO1682 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent 6-phosphogluconate dehydrogenase, NAD-binding YP_660532.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_660533.1 KEGG: sth:STH1184 hypothetical protein, aspartate-rich YP_660534.1 PFAM: Peptidoglycan-binding domain 1 YP_660536.1 PFAM: glutamine amidotransferase, class-II; KEGG: eca:ECA3472 hypothetical protein YP_660538.1 KEGG: cps:CPS_0806 hypothetical protein YP_660539.1 KEGG: cps:CPS_0806 hypothetical protein YP_660540.1 KEGG: cps:CPS_0807 hypothetical protein YP_660541.1 PFAM: protein of unknown function RIO1 protein kinase TPR repeat Tetratricopeptide TPR_2; SMART: Tyrosine protein kinase Serine/threonine protein kinase Tetratricopeptide region; KEGG: gvi:glr1096 serine/threonine protein kinase YP_660542.1 PFAM: sigma factor, ECF-like; KEGG: hch:HCH_04888 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein YP_660544.1 PFAM: Rhodanese-like; KEGG: vpa:VPA1597 hypothetical protein YP_660545.1 PFAM: Calcium-binding EF-hand; KEGG: ath:At2g17890 calcium-dependent protein kinase family protein / CDPK family protein YP_660546.1 PFAM: Saccharopine dehydrogenase; KEGG: nwi:Nwi_1410 saccharopine dehydrogenase YP_660547.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa0840 TonB-dependent receptor YP_660548.1 PFAM: pyruvate kinase; KEGG: son:SO2491 pyruvate kinase II YP_660549.1 Represses the expression of the zwf, eda, glp and gap YP_660550.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_660551.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: cps:CPS_2282 6-phosphogluconolactonase YP_660552.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_660553.1 KEGG: yps:YPTB2700 glucokinase; TIGRFAM: glucokinase; PFAM: Glucokinase YP_660554.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate YP_660555.1 KEGG: pha:PSHAa1887 hypothetical protein YP_660556.1 KEGG: cps:CPS_3290 hypothetical protein YP_660557.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis YP_660558.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_660559.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_660560.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_660561.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_660562.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_660563.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis YP_660564.1 PFAM: Kelch repeat; KEGG: cps:CPS_3966 kelch motif domain protein YP_660565.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_660566.1 KEGG: cps:CPS_1751 hypothetical protein YP_660567.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: pha:PSHAa0375 transcriptional regulator YP_660568.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: pha:PSHAa0374 sensor histidine kinase protein YP_660569.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO4733 lysophospholipase L2 YP_660570.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pha:PSHAa0371 tRNA/rRNA methyltransferase YP_660571.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin YP_660572.1 TIGRFAM: conserved hypothetical protein; KEGG: pha:PSHAb0336 hypothetical protein YP_660573.1 PFAM: Sel1-like repeat; KEGG: vch:VC2601 sodium-type flagellar protein MotX YP_660574.1 KEGG: ecc:c5263 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases ribonuclease R; PFAM: ribonuclease II RNA binding S1 Ribonuclease B, OB region-like; SMART: Cold shock protein YP_660575.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA YP_660576.1 KEGG: cps:CPS_3944 hypothetical protein YP_660577.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: vpa:VP2427 putative transcriptional regulator, LysR family YP_660578.1 PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO0355 AMP-binding protein YP_660579.1 TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: ilo:IL1906 ribosomal protein L14 YP_660580.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_660581.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_660582.1 PFAM: ribosomal protein S14; KEGG: plu:plu4713 30S ribosomal protein S14 YP_660583.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_660584.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_660585.1 binds 5S rRNA along with protein L5 and L25 YP_660586.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_660587.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_660588.1 late assembly protein YP_660589.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_660590.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_660591.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_660592.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_660593.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_660594.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_660595.1 is a component of the macrolide binding site in the peptidyl transferase center YP_660596.1 KEGG: ilo:IL1889 hypothetical protein YP_660597.1 PFAM: nitroreductase; KEGG: vpa:VPA1108 putative NAD(P)H-flavin reductase YP_660598.1 TIGRFAM: formiminoglutamase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: pae:PA3175 formiminoglutamase YP_660599.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_660600.1 TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: son:SO0096 histidine utilization repressor YP_660601.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_660602.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_660603.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: pha:PSHAb0347 putative peptidyl-prolyl cis-trans isomerase YP_660604.1 TIGRFAM: small GTP-binding protein GTP-binding protein TypA; PFAM: elongation factor G-like protein synthesis factor, GTP-binding elongation factor Tu, domain 2; KEGG: vpa:VP0122 BipA protein YP_660605.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme YP_660606.1 KEGG: son:SO4470 hypothetical protein YP_660607.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold; SMART: PAS; KEGG: vvy:VV0197 nitrogen regulation protein NtrB YP_660608.1 KEGG: son:SO4472 nitrogen regulation protein NR(I); TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver sigma-54 factor, interaction region helix-turn-helix, Fis-type ATPase associated with various cellular activities, AAA_5; SMART: ATPase YP_660609.1 PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: Hpt; KEGG: hch:HCH_04935 HD-GYP domain YP_660610.1 KEGG: pha:PSHAa2584 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: phospholipid/glycerol acyltransferase YP_660611.1 PFAM: protein of unknown function DUF1260; KEGG: son:SO0568 hypothetical protein YP_660612.1 KEGG: son:SO4645 hypothetical protein YP_660613.1 PFAM: Endonuclease/exonuclease/phosphatase Endonuclease I; KEGG: cps:CPS_2634 extracellular ribonuclease/nuclease fusion protein YP_660614.1 TIGRFAM: PEP motif putative anchor-like; PFAM: cellulosome anchoring protein, cohesin region YP_660615.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin protease-associated PA proteinase inhibitor I9, subtilisin propeptide; KEGG: son:SO1915 serine protease, subtilase family YP_660616.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: ilo:IL2305 HlyD family secretion protein YP_660617.1 PFAM: acriflavin resistance protein; KEGG: ilo:IL2304 RND family efflux transporter YP_660618.1 TIGRFAM: RNA polymerase sigma factor RpoD; PFAM: sigma-70 region 1.1 sigma-70 region 3 sigma-70 region 2 sigma-70 region 4 sigma-70, non-essential region sigma-70 region 1.2; KEGG: son:SO1284 RNA polymerase sigma-70 factor YP_660619.1 KEGG: cps:CPS_4335 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-type TOPRIM domain containing protein DNA primase DnaG, DnaB-binding DNA primase catalytic core-like; SMART: Toprim subdomain YP_660620.1 PFAM: GatB/Yqey; KEGG: vpa:VP0406 hypothetical protein YP_660621.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_660622.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_660623.1 PFAM: protein of unknown function DUF205; KEGG: ppr:PBPRA0435 putative membrane protein YP_660624.1 TIGRFAM: dihydroneopterin aldolase; KEGG: xcb:XC_3887 dihydroneopterin aldolase YP_660625.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: son:SO1292 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YP_660626.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_660627.1 PFAM: histidine triad (HIT) protein; KEGG: hch:HCH_00759 diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase YP_660628.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: cps:CPS_1138 GGDEF/EAL domain protein YP_660629.1 KEGG: pha:PSHAa2383 hypothetical protein YP_660630.1 KEGG: pha:PSHAa2382 signal transduction protein YP_660631.1 Required for efficient pilin antigenic variation YP_660632.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: ilo:IL2120 signal transduction histidine kinase YP_660633.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: vfi:VF1988 phosphate regulon transcriptional regulatory protein PhoB YP_660634.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold; KEGG: pha:PSHAa0598 phosphate regulon sensor protein PhoR YP_660635.1 KEGG: pha:PSHAb0526 hypothetical protein YP_660636.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ilo:IL0619 outer membrane protein YP_660637.1 PFAM: lipase, class 2; KEGG: cel:K12B6.3 Hypothetical protein K12B6.3 YP_660638.1 PFAM: iron permease FTR1; KEGG: ilo:IL0111 high-affinity Fe2+/Pb2+ permease YP_660639.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC1970 TonB-dependent receptor YP_660640.1 KEGG: pha:PSHAb0520 conserved protein of unknown function ; putative secreted protein YP_660641.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: ilo:IL2118 TonB system biopolymer transport component YP_660642.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: ilo:IL2117 TonB system biopolymer transport component YP_660643.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ilo:IL2116 biopolymer transport protein YP_660644.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pha:PSHAb0524 putative TonB2 protein YP_660645.1 PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: pha:PSHAb0525 putative unknown membrane associated protein YP_660646.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: cps:CPS_4717 alkyl hydroperoxide reductase, subunit C YP_660647.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO0956 alkyl hydroperoxide reductase, F subunit YP_660649.1 PFAM: glycoside hydrolase, family 8; KEGG: bha:BH2105 xylanase Y YP_660650.1 PFAM: sugar transferase; KEGG: vvu:VV21582 sugar transferase involved in lipopolysaccharide synthesis YP_660651.1 KEGG: vch:VC0935 hypothetical protein YP_660652.1 PFAM: polysaccharide export protein; KEGG: hch:HCH_04680 periplasmic protein involved in polysaccharide export YP_660653.1 PFAM: lipopolysaccharide biosynthesis; KEGG: pha:PSHAa1780 exopolysaccharide biosynthesis protein YP_660654.1 PFAM: PHP-like; KEGG: pha:PSHAa1779 capsular polysaccharide biosynthesis, CapC YP_660655.1 KEGG: vch:VC0938 hypothetical protein YP_660656.1 KEGG: vvu:VV12311 hypothetical protein YP_660657.1 PFAM: O-antigen polymerase; KEGG: vch:VC0931 hypothetical protein YP_660658.1 KEGG: vch:VC0932 hypothetical protein YP_660659.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: tcx:Tcr_0208 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) YP_660660.1 KEGG: hch:HCH_03939 predicted periplasmic protein YP_660661.1 KEGG: hch:HCH_04697 hypothetical protein YP_660663.1 PFAM: polysaccharide biosynthesis protein; KEGG: gvi:gll1781 probable polysaccharide transport protein YP_660664.1 PFAM: acyltransferase 3; KEGG: rsp:RSP_2692 acyltransferase domain (LPS) YP_660665.1 PFAM: glycosyl transferase, group 1; KEGG: sab:SAB0901 probable glycosyl transferase YP_660666.1 KEGG: bfs:BF4300 putative exopolysaccharide biosynthesis protein YP_660667.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: ppr:PBPRA0207 putative nucleotide sugar epimerase YP_660668.1 TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: hch:HCH_04683 glycosyltransferase YP_660669.1 PFAM: glycosyl transferase, group 1; KEGG: hch:HCH_04683 glycosyltransferase YP_660670.1 PFAM: glycosyl transferase, group 1; KEGG: hch:HCH_04684 glycosyltransferase YP_660671.1 KEGG: hch:HCH_04685 exopolysaccharide production protein YP_660672.1 PFAM: glycosyl transferase, family 2; KEGG: hch:HCH_04693 glycosyltransferase involved in cell wall biogenesis YP_660673.1 PFAM: acyltransferase 3; KEGG: rpa:RPA0536 acyltransferase 3 family YP_660674.1 KEGG: xoo:XOO3169 GumL YP_660675.1 PFAM: acyltransferase 3; KEGG: atc:AGR_C_3040 hypothetical protein YP_660676.1 PFAM: acyltransferase 3; KEGG: par:Psyc_0638 possible acyltransferase family protein YP_660677.1 KEGG: sye:Syncc9902_0044 hypothetical protein YP_660680.1 KEGG: xcv:XCV2777 xanthan biosynthesis pyruvyltransferase GumL YP_660681.1 KEGG: nar:Saro_0670 hypothetical protein YP_660682.1 KEGG: pha:PSHAa0464 hypothetical protein YP_660683.1 KEGG: cps:CPS_4685 hypothetical protein YP_660684.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_660685.1 KEGG: dar:Daro_1852 hypothetical protein YP_660686.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: zmo:ZMO1604 phosphodiesterase-nucleotide pyrophosphatase YP_660687.1 PFAM: Catalase-like; KEGG: pae:PA4613 catalase YP_660688.1 PFAM: Ankyrin; KEGG: pfl:PFL_5357 ankyrin domain protein YP_660689.1 KEGG: pha:PSHAb0210 cold-shock regulated carbon starvation protein A YP_660690.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC1750 TonB-dependent receptor YP_660691.1 PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAb0050 hypothetical protein YP_660692.1 PFAM: DSBA oxidoreductase; KEGG: cps:CPS_2425 DsbA-like thioredoxin domain protein YP_660693.1 PFAM: helix-turn-helix, AraC type; KEGG: pae:PA0831 transcriptional regulator OruR YP_660694.1 PFAM: biotin/lipoyl attachment catalytic domain of components of various dehydrogenase complexes E3 binding; KEGG: bur:Bcep18194_A5442 dihydrolipoamide acetyltransferase YP_660695.1 paralogs to the E1 component of pyruvate dehydrogenase subunit E1 YP_660697.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: xcb:XC_1546 TonB-dependent receptor YP_660698.1 PFAM: Citrate carrier protein; KEGG: stm:STM0057 putative citrate-sodium symport YP_660699.1 KEGG: chy:CHY_0583 hypothetical protein YP_660700.1 KEGG: ecs:ECs0759 hypothetical protein YP_660701.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: reu:Reut_A3085 regulatory protein, LysR:LysR, substrate-binding YP_660702.1 PFAM: regulatory protein, MarR; KEGG: bja:blr2331 transcriptional regulatory protein YP_660703.1 KEGG: pha:PSHAa2169 fumarylacetoacetase (fumarylacetoacetate hydrolase) (beta-diketonase)(FAA); TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase YP_660704.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_4358 glyoxalase family protein YP_660705.1 KEGG: nar:Saro_0597 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_660706.1 PFAM: protein of unknown function DUF1348; KEGG: pfo:Pfl_2878 protein of unknown function DUF1348 YP_660707.1 PFAM: ferredoxin oxidoreductase FAD/NAD(P)-binding Oxidoreductase FAD-binding region pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: pfo:Pfl_5689 pyridoxamine 5'-phosphate oxidase-like, FMN-binding YP_660708.1 PFAM: glutathione S-transferase-like; KEGG: ret:RHE_CH01278 glutathione S-transferase protein YP_660709.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: son:SOA0165 transcriptional regulator, LysR family YP_660710.1 PFAM: aminotransferase, class I and II; KEGG: cps:CPS_1142 CobC protein YP_660711.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: cps:CPS_1143 putative cobalamin biosynthesis protein D YP_660712.1 PFAM: Phosphoglycerate mutase; KEGG: cps:CPS_1144 phosphoglycerate mutase family protein YP_660713.1 PFAM: periplasmic binding protein; KEGG: cps:CPS_1163 putative vitamin B12 transport protein BtuF YP_660714.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide YP_660715.1 TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid a,c-diamide synthase CobB/CobQ-like glutamine amidotransferase; KEGG: vpa:VPA0932 cobyric acid synthase YP_660716.1 PFAM: Phosphoglycerate mutase; KEGG: vpa:VP1307 putative alpha-ribazole-5'-phosphate phosphatase CobC YP_660717.1 PFAM: cobalbumin biosynthesis enzyme; KEGG: cps:CPS_3657 bifunctional cobalamin biosynthesis protein CobP YP_660718.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: vvy:VV1475 cobalamin-5-phosphate synthase YP_660719.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: vpa:VP1304 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_660720.1 PFAM: transport system permease protein; KEGG: cps:CPS_1165 putative vitamin B12 transport system permease protein BtuC YP_660721.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: cps:CPS_1166 putative vitamin B12 transport ATP-binding protein BtuD YP_660722.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: xcb:XC_2846 iron receptor YP_660723.1 PFAM: PepSY-associated TM helix; KEGG: ilo:IL2512 uncharacterized iron-regulated membrane protein YP_660724.1 PFAM: Stress responsive alpha-beta barrel; KEGG: ccr:CC2267 hypothetical protein YP_660725.1 KEGG: pha:PSHAa2270 hypothetical protein YP_660727.1 KEGG: cps:CPS_4299 hypothetical protein YP_660728.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: xcb:XC_4327 Oar protein YP_660729.1 PFAM: response regulator receiver LytTr DNA-binding region; KEGG: pha:PSHAa1405 response regulator in two-component regulatory system YP_660730.1 PFAM: histidine kinase internal region; KEGG: pha:PSHAa1404 hypothetical protein YP_660731.1 PFAM: response regulator receiver LytTr DNA-binding region; KEGG: ilo:IL1261 response regulator of the LytR/AlgR family YP_660732.1 KEGG: yps:YPTB3207 glutathione synthetase; TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase-like glutathione synthetase, ATP-binding RimK-like ATP-grasp YP_660733.1 PFAM: protein of unknown function DUF179; KEGG: pha:PSHAa2600 hypothetical protein YP_660734.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase, RNase H-like fold; KEGG: pha:PSHAa2601 Holliday junction resolvase-like protein YP_660735.1 PFAM: Redoxin Thioredoxin domain; KEGG: cps:CPS_3822 putative thioredoxin YP_660736.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_660737.1 PFAM: helix-turn-helix, AraC type PAS fold-4; KEGG: rba:RB9879 probable transcription regulator YP_660738.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: cps:CPS_3701 hypothetical protein YP_660739.1 KEGG: hch:HCH_03840 predicted phosphoribosyltransferase YP_660740.1 PFAM: phosphoribosyltransferase; KEGG: hch:HCH_03840 predicted phosphoribosyltransferase YP_660741.1 PFAM: protein of unknown function DUF480; KEGG: son:SO1867 hypothetical protein YP_660742.1 PFAM: histone deacetylase superfamily; KEGG: cps:CPS_3373 histone deacetylase family protein YP_660743.1 KEGG: pha:PSHAa1267 hypothetical protein YP_660744.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: ade:Adeh_3603 peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_660745.1 KEGG: ppr:PBPRB0391 conserved hypothetical protein YP_660746.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N sodium/hydrogen exchanger; KEGG: son:SO1481 glutathione-regulated potassium-efflux system protein YP_660747.1 KEGG: cps:CPS_5028 hypothetical protein YP_660748.1 KEGG: cps:CPS_5027 putative exopolysaccharide biosynthesis protein YP_660749.1 PFAM: lipopolysaccharide biosynthesis; KEGG: cps:CPS_5026 chain length determinant family protein YP_660750.1 PFAM: polysaccharide export protein; KEGG: cps:CPS_5025 polysaccharide biosynthesis/export protein YP_660751.1 PFAM: sugar transferase; KEGG: cps:CPS_5023 bacterial sugar transferase domain protein YP_660752.1 PFAM: polysaccharide deacetylase; KEGG: eba:ebA4258 polysaccharide deacetylase YP_660753.1 TIGRFAM: eight transmembrane protein EpsH; KEGG: neu:NE1797 hypothetical protein YP_660754.1 TIGRFAM: methyltransferase FkbM family; KEGG: sso:SSO1901 hypothetical protein YP_660755.1 PFAM: acyltransferase 3; KEGG: cps:CPS_5002 acyltransferase family protein YP_660757.1 KEGG: dvu:DVUA0053 hypothetical protein YP_660758.1 PFAM: glycosyl transferase, group 1; KEGG: dar:Daro_2405 glycosyl transferase, group 1 YP_660759.1 PFAM: glycosyl transferase, family 2; KEGG: rru:Rru_A0938 glycosyl transferase, family 2 YP_660760.1 PFAM: sulfotransferase; KEGG: hch:HCH_06158 putative sulfotransferase protein YP_660763.1 KEGG: jan:Jann_4268 FAD dependent oxidoreductase YP_660764.1 PFAM: O-antigen polymerase; KEGG: vpa:VP1464 putative membrane protein of ExoQ family, involved in exopolysaccharide production YP_660765.1 PFAM: acyltransferase 3; KEGG: cps:CPS_5002 acyltransferase family protein YP_660766.1 PFAM: glycosyl transferase, family 2; KEGG: pfu:PF1359 glycosyl transferase YP_660767.1 PFAM: polysaccharide biosynthesis protein; KEGG: noc:Noc_1942 polysaccharide biosynthesis protein YP_660768.1 PFAM: glycosyl transferase, group 1; KEGG: xoo:XOO3172 GumI YP_660770.1 PFAM: polysaccharide biosynthesis protein; KEGG: ret:RHE_CH03216 exopolysaccharide polymerization and/or export protein YP_660771.1 PFAM: glycosyl transferase, group 1; KEGG: tbd:Tbd_0302 glycosyltransferase YP_660772.1 KEGG: noc:Noc_0749 hypothetical protein YP_660773.1 PFAM: glycosyl transferase, group 1; KEGG: neu:NE1796 glycosyl transferase group 1 YP_660774.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II asparagine synthase; KEGG: neu:NE1795 glutamine amidotransferase class-II:asparagine synthase YP_660775.1 KEGG: hch:HCH_02721 hypothetical protein YP_660776.1 KEGG: nar:Saro_1349 hypothetical protein YP_660777.1 PFAM: glycosyl transferase, group 1; KEGG: gme:Gmet_2001 glycosyl transferase, group 1 YP_660778.1 PFAM: glycosyl transferase, family 2; KEGG: pfo:Pfl_2017 glycosyl transferase, family 2 YP_660780.1 KEGG: cps:CPS_5003 hypothetical protein YP_660781.1 PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: cps:CPS_0310 TPR domain protein YP_660782.1 PFAM: FAD linked oxidase-like; KEGG: cps:CPS_4397 FAD-binding protein YP_660784.1 KEGG: cps:CPS_4396 hypothetical protein YP_660785.1 PFAM: Patatin; KEGG: gsu:GSU0310 hypothetical protein YP_660786.1 PFAM: protein of unknown function DUF218; KEGG: cps:CPS_2002 hypothetical protein YP_660787.1 KEGG: eba:ebA1639 predicted nucleoside-diphosphate-sugar epimerase YP_660788.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: cps:CPS_4394 serine protease YP_660791.1 KEGG: tbd:Tbd_2497 HPr kinase YP_660792.1 KEGG: tbd:Tbd_2498 hypothetical protein YP_660793.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA YP_660794.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pha:PSHAa1822 transcriptional regulator YP_660795.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates YP_660796.1 PFAM: Alkaline phosphatase; KEGG: cps:CPS_1963 alkaline phosphatase YP_660797.1 KEGG: vch:VC0807 hypothetical protein YP_660798.1 PFAM: Rhomboid-like protein; KEGG: pha:PSHAa2191 rhomboid protein YP_660799.1 PFAM: glutathionylspermidine synthase; KEGG: hch:HCH_06602 glutathionylspermidine synthase YP_660800.1 KEGG: ppr:PBPRB0051 hypothetical integral membrane protein YP_660801.1 PFAM: protein of unknown function DUF350; KEGG: hch:HCH_06600 predicted membrane protein YP_660802.1 KEGG: hch:HCH_06599 hypothetical protein YP_660803.1 PFAM: Ion transport 2; KEGG: hch:HCH_06598 Kef-type K+ transport system, predicted NAD-binding component YP_660804.1 PFAM: PspA/IM30; KEGG: hch:HCH_06597 phage shock protein A (IM30), suppresses sigma54-dependent transcription YP_660805.1 KEGG: hch:HCH_06595 hypothetical protein YP_660806.1 KEGG: hch:HCH_06594 hypothetical protein YP_660807.1 TIGRFAM: S-adenosylmethionine--tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: son:SO3114 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_660808.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_660809.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_660810.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_660811.1 TIGRFAM: protein-export membrane protein, SecD/SecF family protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: cps:CPS_1123 protein-export membrane protein SecF YP_660812.1 PFAM: inositol monophosphatase; KEGG: cps:CPS_1128 inositol-1-monophosphatase YP_660813.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vch:VCA0890 glyoxylase I family protein YP_660815.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pha:PSHAa2673 tRNA/rRNA methyltransferase YP_660816.1 TIGRFAM: serine O-acetyltransferase; KEGG: cps:CPS_1130 serine O-acetyltransferase YP_660817.1 TIGRFAM: putative transcriptional regulator, Rrf2 family iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: vfi:VF0616 Rrf2 family protein YP_660818.1 TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase, class V aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ppr:PBPRA0750 putative aminotransferase NifS, class V YP_660819.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU-like-like; KEGG: son:SO2265 NifU family protein YP_660820.1 TIGRFAM: iron-sulfur cluster assembly accessory protein iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF; KEGG: eca:ECA3235 iron-sulfur cluster assembly protein YP_660821.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins YP_660822.1 TIGRFAM: Fe-S protein assembly chaperone HscA; PFAM: Heat shock protein 70; KEGG: sdy:SDY_2722 HscA YP_660823.1 TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: pha:PSHAa2666 [2Fe-2S] ferredoxin, electron carrier protein, involved in assembly of Fe-S clusters YP_660824.1 KEGG: son:SO2604 hypothetical protein YP_660825.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO1238 acyltransferase family protein YP_660826.1 PFAM: metallophosphoesterase; KEGG: reu:Reut_A0941 metallophosphoesterase YP_660827.1 KEGG: son:SO1626 protein-P-II uridylyltransferase; TIGRFAM: protein-P-II uridylyltransferase; PFAM: amino acid-binding ACT DNA polymerase, beta-like region metal-dependent phosphohydrolase, HD subdomain GlnD PII-uridylyltransferase; SMART: Metal-dependent phosphohydrolase, HD region YP_660828.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: pha:PSHAa2037 methionine aminopeptidase; contains a divalent metal, usually cobalt YP_660829.1 PFAM: ribosomal protein S2; KEGG: pha:PSHAa2036 30S ribosomal subunit protein S2 YP_660830.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_660831.1 Catalyzes the phosphorylation of UMP to UDP YP_660832.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_660833.1 KEGG: vpa:VP2314 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_660834.1 PFAM: phosphatidate cytidylyltransferase; KEGG: ilo:IL0840 CDP-diglyceride synthetase YP_660835.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_660836.1 KEGG: cps:CPS_1560 membrane-associated zinc metalloprotease EcfE; TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF YP_660837.1 PFAM: surface antigen (D15) surface antigen variable number; KEGG: cps:CPS_1561 outer membrane protein, OMP85 family YP_660838.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: cps:CPS_1562 outer membrane protein, OmpH family YP_660839.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; KEGG: eca:ECA1041 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_660840.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_660841.1 TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: cps:CPS_1565 UDP-N-acetylglucosamine acyltransferase YP_660842.1 KEGG: pha:PSHAa2017 tetraacyldisaccharide-1-P synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase, family 19 YP_660843.1 PFAM: ribonuclease HII/HIII; KEGG: pha:PSHAa2016 RNAse HII YP_660844.1 KEGG: pha:PSHAa2015 DNA polymerase III subunit alpha; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP-like nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: Phosphoesterase PHP-like YP_660845.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_660846.1 TIGRFAM: tRNA(Ile)-lysidine synthetase tRNA(Ile)-lysidine synthetase-like; PFAM: PP-loop; KEGG: sdy:SDY_0206 cell cycle protein YP_660847.1 PFAM: lipase, class 3; KEGG: vpa:VPA0997 lipase-related protein YP_660848.1 PFAM: Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: pha:PSHAa1088 TPR motives YP_660849.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: ppr:PBPRA2946 hypothetical protein YP_660850.1 PFAM: TrkA-N TrkA-C sodium/hydrogen exchanger; KEGG: ilo:IL1685 Kef-type K+ transport system, membrane component YP_660851.1 PFAM: carboxyl transferase biotin/lipoyl attachment; KEGG: ccr:CC3214 carbamoyl-phosphate synthase/carboxyl transferase YP_660852.1 PFAM: helix-turn-helix, AraC type transcription activator, effector binding; KEGG: mca:MCA2158 transcriptional regulator, AraC family YP_660853.1 PFAM: protein of unknown function DUF1456; KEGG: ppr:PBPRA2338 conserved hypothetical protein YP_660854.1 PFAM: Patatin; KEGG: cps:CPS_1594 patatin-like phospholipase family protein YP_660855.1 PFAM: beta-lactamase-like; KEGG: tel:tlr1981 hypothetical protein YP_660856.1 TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S) Anticodon-binding YbaK/prolyl-tRNA synthetase associated region; KEGG: cps:CPS_3230 prolyl-tRNA synthetase YP_660857.1 PFAM: protein of unknown function UPF0066; KEGG: pha:PSHAa1622 hypothetical protein YP_660858.1 KEGG: cps:CPS_1107 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase-like hydrolase Haloacid dehalogenase-like hydrolase, type 3 YP_660859.1 PFAM: type IV pilus assembly PilZ; KEGG: pha:PSHAa0662 hypothetical protein YP_660860.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_660861.1 KEGG: rba:RB356 hypothetical protein YP_660862.1 KEGG: gme:Gmet_1668 putative transmembrane protein YP_660863.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: mag:amb3617 hypothetical protein YddU YP_660864.1 TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase-like; KEGG: pha:PSHAa0159 aconitate hydratase YP_660865.1 KEGG: eba:ebA2078 hypothetical protein YP_660866.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: pha:PSHAa2411 hypothetical protein YP_660867.1 KEGG: pca:Pcar_0146 transporter, NRAMP family YP_660868.1 PFAM: helix-turn-helix, AraC type regulatory protein, TetR; KEGG: reu:Reut_B3613 regulatory protein, TetR YP_660870.1 TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase, subunit II COX aromatic rich; KEGG: pha:PSHAa2231 ubiquinol oxidase polypeptide II (cytochrome o subunit 2) (oxidase BO(3) subunit 2) (cytochrome o ubiquinol oxidase subunit 2) (ubiquinol oxidase chain B) YP_660871.1 PFAM: cytochrome c oxidase, subunit I; KEGG: pha:PSHAa2230 ubiquinol oxidase polypeptide I (cytochrome o subunit 1) (oxidase BO(3) subunit 1) (cytochrome o ubiquinol oxidase subunit 1) (ubiquinol oxidase chain A) YP_660872.1 PFAM: cytochrome c oxidase, subunit III; KEGG: pha:PSHAa2229 cytochrome o ubiquinol oxidase subunit III (ubiquinol oxidase chain C) YP_660873.1 PFAM: cytochrome C oxidase subunit IV; KEGG: pha:PSHAa2228 cytochrome o ubiquinol oxidase protein (ubiquinol oxidase chain D) YP_660874.1 converts protoheme IX and farnesyl diphosphate to heme O YP_660875.1 KEGG: rba:RB641 sensory histidine protein kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif YP_660876.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_660877.1 PFAM: peptidase M20 peptidase dimerisation; KEGG: pha:PSHAb0171 putative hydrolase YP_660878.1 PFAM: oxidoreductase-like Oxidoreductase-like homoserine dehydrogenase, NAD-binding; KEGG: cac:CAC1480 predicted dehydrogenase YP_660879.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_660880.1 KEGG: pha:PSHAa0613 hypothetical protein YP_660883.1 PFAM: Sporulation related; KEGG: eli:ELI_10110 hypothetical protein YP_660884.1 KEGG: eli:ELI_10115 hypothetical protein YP_660888.1 KEGG: pha:PSHAa0755 hypothetical protein YP_660889.1 KEGG: pha:PSHAa0754 hypothetical protein YP_660890.1 TIGRFAM: Ribonucleotide reductase regulator NrdR-like; PFAM: ATP-cone; KEGG: ilo:IL1871 predicted transcriptional regulator YP_660891.1 KEGG: ppr:PBPRA0797 putative pyrimidine deaminase/pyrimidine reductase; TIGRFAM: riboflavin biosynthesis protein RibD Riboflavin-specific deaminase-like; PFAM: CMP/dCMP deaminase, zinc-binding bifunctional deaminase-reductase-like YP_660892.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_660893.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase GTP cyclohydrolase II; KEGG: son:SO3467 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative YP_660894.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_660895.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_660896.1 TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein-like; KEGG: spt:SPA2304 thiamine-monophosphate kinase YP_660897.1 PFAM: phosphatidylglycerophosphatase A; KEGG: son:SO3463 phosphatidylglycerophosphatase A YP_660898.1 PFAM: protein of unknown function DUF188; KEGG: cps:CPS_3584 hypothetical protein YP_660899.1 TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase, central region Transketolase-like; KEGG: vvy:VV0868 deoxyxylulose-5-phosphate synthase YP_660900.1 PFAM: Polyprenyl synthetase; KEGG: vpa:VP0687 geranyltranstransferase YP_660901.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: ppr:PBPRA0807 putative exodeoxyribonuclease, small subunit YP_660902.1 Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. YP_660903.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella YP_660904.1 KEGG: cps:CPS_1374 putative lipoprotein YP_660905.1 KEGG: ilo:IL1381 hypothetical protein YP_660906.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase Methyltransferase type 11 Methyltransferase type 12; KEGG: ilo:IL1383 cyclopropane-fatty-acyl-phospholipid synthase YP_660907.1 PFAM: protein of unknown function DUF1365; KEGG: ilo:IL1384 hypothetical protein YP_660908.1 KEGG: vpa:VP1121 hypothetical protein YP_660909.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ilo:IL1386 short chain dehydrogenase family protein YP_660910.1 PFAM: protein of unknown function DUF1486; KEGG: eca:ECA2216 hypothetical protein YP_660911.1 SMART: Peptidase S16, lon-like; KEGG: vpa:VP2360 hypothetical protein YP_660912.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_660913.1 TIGRFAM: anti-sigma factor, putative, ChrR family; KEGG: ilo:IL1392 transcription negative regulator ChrR YP_660914.1 KEGG: cps:CPS_3916 putative lipoprotein YP_660915.1 KEGG: eca:ECA3347 ribosomal large subunit pseudouridine synthase D; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 pseudouridine synthase YP_660916.1 PFAM: protein of unknown function DUF152; KEGG: mca:MCA0973 conserved hypothetical protein TIGR00726 YP_660917.1 PFAM: AAA ATPase, central region Clp, N terminal ATPase associated with various cellular activities, AAA_5 ATPase AAA-2; SMART: ATPase; KEGG: ilo:IL1181 ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones YP_660918.1 PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: neu:NE1444 TPR repeat YP_660919.1 KEGG: hch:HCH_00502 protein of unknown function (DUF1555) YP_660920.1 KEGG: ilo:IL1180 phosphatidylserine synthase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_660921.1 PFAM: protein of unknown function DUF699, ATPase putative; KEGG: pha:PSHAa0121 hypothetical protein YP_660922.1 PFAM: thioesterase superfamily; KEGG: cps:CPS_1696 thioesterase family protein YP_660923.1 KEGG: pha:PSHAb0433 hypothetical protein YP_660924.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0067 TonB-dependent receptor YP_660925.1 KEGG: pha:PSHAa2432 hypothetical protein YP_660926.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: cps:CPS_0065 putative nicotinamide mononucleotide transporter PnuC YP_660927.1 PFAM: aminoglycoside phosphotransferase; KEGG: ilo:IL2355 choline kinase involved in LPS biosynthesis YP_660929.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: ssn:SSO_4523 acyltransferase for 30S ribosomal subunit protein S18; acetylation of N-terminal alanine YP_660931.1 KEGG: ath:At1g28290 pollen Ole e 1 allergen and extensin family protein YP_660933.1 PFAM: helix-turn-helix motif YP_660934.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rba:RB9586 probable oxidoreductase YP_660935.1 KEGG: pha:PSHAa0191 hypothetical protein YP_660936.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: cps:CPS_2531 transcriptional regulator, LysR family YP_660937.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: rba:RB9584 ripening-induced protein-putative Zn-containing oxidoreductase YP_660938.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_660939.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_660940.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor PCRF; KEGG: ppr:PBPRA0569 putative peptide chain release factor 2 YP_660941.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_660942.1 KEGG: vvu:VV11810 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase-like Ketopantoate reductase ApbA/PanE-like YP_660943.1 TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: ppr:PBPRA2511 putative pseudouridine synthase Rlu family protein YP_660944.1 PFAM: Hpt; KEGG: pha:PSHAa2621 sensory box sensor histidine kinase/response regulator YP_660945.1 PFAM: peptidase M16-like; KEGG: son:SO3560 peptidase, M16 family YP_660946.1 TIGRFAM: glutamate--cysteine ligase; KEGG: cps:CPS_4078 glutamate--cysteine ligase YP_660947.1 KEGG: cps:CPS_4077 putative lipoprotein YP_660948.1 PFAM: AMP-dependent synthetase and ligase; KEGG: reu:Reut_A3057 AMP-dependent synthetase and ligase YP_660949.1 PFAM: regulatory protein, TetR; KEGG: cps:CPS_2448 transcription regulator, TetR family YP_660950.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ccr:CC0353 enoyl-CoA hydratase/isomerase family protein YP_660951.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cps:CPS_2449 2,4-dienoyl-CoA reductase YP_660952.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: cps:CPS_4921 substrate-binding transcriptional regulator, LysR family YP_660953.1 PFAM: aldo/keto reductase; KEGG: pha:PSHAa0541 oxidoreductase, aldo/keto reductase YP_660954.1 KEGG: sfx:S3217 hypothetical protein YP_660955.1 PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: cps:CPS_0985 putative alpha amylase YP_660956.1 PFAM: Na+/H+ antiporter NhaC; KEGG: ilo:IL2378 Na+/H+ antiporter YP_660957.1 PFAM: sodium/hydrogen exchanger; KEGG: pha:PSHAb0496 putative Na+/H+ antiporter YP_660958.1 PFAM: BLUF domain containing protein; KEGG: son:SO3629 expression activator-related protein YP_660959.1 KEGG: cps:CPS_1758 putative alkaline phosphatase YP_660960.1 KEGG: pae:PA0914 hypothetical protein YP_660963.1 PFAM: transposase IS116/IS110/IS902; KEGG: cps:CPS_2742 ISCps7, transposase YP_660964.1 PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAb0050 hypothetical protein YP_660965.1 PFAM: helix-turn-helix motif; KEGG: cps:CPS_2176 hypothetical protein YP_660966.1 PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase YP_660968.1 PFAM: Uncharacterised conserved protein UCP006287; KEGG: son:SO3983 hypothetical protein YP_660969.1 PFAM: protein of unknown function DUF45; KEGG: cps:CPS_3293 conserved hypothetical protein YP_660970.1 KEGG: pha:PSHAb0334 hypothetical protein YP_660971.1 PFAM: SpoVR; KEGG: vpa:VP0985 hypothetical protein YP_660972.1 PFAM: protein of unknown function DUF444; KEGG: pha:PSHAa1213 hypothetical protein YP_660973.1 PFAM: PrkA serine kinase PrkA AAA; KEGG: vch:VC1872 serine protein kinase YP_660974.1 PFAM: manganese and iron superoxide dismutase; KEGG: pha:PSHAa1215 iron superoxide dismutase YP_660975.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: cps:CPS_3475 glutaredoxin, homolog YP_660976.1 PFAM: BFD-like [2Fe-2S]-binding region; KEGG: vvy:VV3028 bacterioferritin-associated ferredoxin YP_660977.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: ilo:IL1803 peroxiredoxin, AhpC/Tsa family YP_660978.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A) YP_660979.1 PFAM: OmpA/MotB; KEGG: cps:CPS_3471 sodium-type flagellar protein MotY YP_660980.1 hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic YP_660981.1 KEGG: pha:PSHAa1091 glyoxalase I, nickel isomerase (lactoylglutathione lyase); TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_660982.1 PFAM: small multidrug resistance protein; KEGG: yps:YPTB0409 putative SugE efflux pump YP_660983.1 PFAM: glycoside hydrolase, family 5 Thrombospondin type 3 repeat Carbohydrate-binding family V/XII; KEGG: hch:HCH_03914 endoglucanase YP_660984.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: bja:blr3973 probable NADP-dependent oxidoreductase YP_660985.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: bja:bll1082 2-deoxy-D-gluconate 3-dehydrogenase YP_660987.1 PFAM: acyl-CoA dehydrogenase-like; KEGG: cps:CPS_2263 acyl-CoA dehydrogenase family protein YP_660992.1 KEGG: vfi:VF1353 virulence gene repressor RsaL YP_660993.1 KEGG: lpn:lpg2572 hypothetical protein YP_660994.1 KEGG: nmu:Nmul_A0921 hypothetical protein YP_660995.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: sdn:Sden_1663 GntR-like protein YP_660996.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate YP_660997.1 KEGG: cps:CPS_2821 putative 2-methylcitrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase YP_660998.1 Catalyzes the conversion of citrate to isocitrate YP_660999.1 TIGRFAM: probable AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: ppu:PP2337 hypothetical protein YP_661000.1 PFAM: major facilitator superfamily MFS_1; KEGG: hch:HCH_06744 permease of the major facilitator superfamily YP_661001.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: hch:HCH_02106 response regulator containing a CheY-like receiver domain and a GGDEF domain YP_661002.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: mca:MCA0639 NADH-dependent flavin oxidoreductase, Oye family YP_661003.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: ilo:IL1440 Zn-dependent alcohol dehydrogenase YP_661004.1 PFAM: Ethanolamine ammonia lyase large subunit; KEGG: psp:PSPPH_4667 ethanolamine ammonia-lyase, heavy subunit YP_661005.1 catalyzes the formation of acetaldehyde from ethanolamine YP_661006.1 KEGG: pha:PSHAa1664 hypothetical protein YP_661007.1 KEGG: cps:CPS_0144 putative lipoprotein YP_661008.1 KEGG: noc:Noc_0277 possible streptogramin lyase, gluconolactonase family YP_661009.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pha:PSHAb0174 putative oxidoreductase, NAD(P)-binding domain YP_661010.1 PFAM: protein of unknown function DUF1212; KEGG: pha:PSHAb0236 hypothetical protein YP_661011.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: lpn:lpg0074 glutamate synthase YP_661012.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_2679 hypothetical protein YP_661013.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: cps:CPS_0816 transcriptional regulator, LysR family YP_661014.1 PFAM: small multidrug resistance protein; KEGG: pha:PSHAa2214 quaternary ammonium compound-resistance protein (Quarternary ammonium determinant F) YP_661015.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: pha:PSHAa2213 alcohol dehydrogenase class III (glutathione-dependent formaldehyde dehydrogenase )(FDH) (FALDH) YP_661016.1 PFAM: putative esterase; KEGG: cps:CPS_0819 putative esterase YP_661017.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: cps:CPS_1392 transcriptional regulator, LysR family YP_661018.1 KEGG: rba:RB12586 hypothetical protein YP_661020.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ana:alr2588 ferrichrome-iron receptor YP_661021.1 PFAM: PepSY-associated TM helix; KEGG: ilo:IL2512 uncharacterized iron-regulated membrane protein YP_661022.1 PFAM: short chain fatty acid transporter; KEGG: son:SO1391 short-chain fatty acids transporter YP_661023.1 PFAM: protein of unknown function UPF0187; KEGG: par:Psyc_1261 hypothetical protein YP_661024.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pst:PSPTO0258 D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_661025.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: glutathione S-transferase-like; KEGG: pha:PSHAb0337 maleylacetoacetate isomerase (MAAI) (glutathione S-transferase zeta 1) (GSTZ1-1) YP_661026.1 PFAM: Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: cps:CPS_2378 TPR domain protein YP_661027.1 KEGG: vvy:VV1819 hypothetical protein YP_661028.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: vpa:VP1379 putative homoserine/homoserine lactone efflux protein YP_661029.1 PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: pha:PSHAa2018 cytochrome d terminal oxidase, polypeptide subunit I YP_661030.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: pha:PSHAa2019 cytochrome d terminal oxidase, polypeptide subunit II YP_661031.1 TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT-like; KEGG: pha:PSHAa2020 hypothetical protein YP_661032.1 PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase; KEGG: pha:PSHAa2021 cysteine transport (export) protein (ABC superfamily, membrane (N-terminal), atp_bind (C-terminal)) YP_661033.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: pha:PSHAa2022 cysteine transport (export) protein (ABC superfamily, membrane (N-terminal), atp_bind (C-terminal)) YP_661034.1 PFAM: OsmC-like protein; KEGG: bba:Bd0909 putative redox protein YP_661035.1 KEGG: cps:CPS_2574 hypothetical protein YP_661036.1 KEGG: xcv:XCV1857 putative glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein YP_661037.1 TIGRFAM: metal dependent phophohydrolase; SMART: Metal-dependent phosphohydrolase, HD region; KEGG: cps:CPS_0287 hypothetical protein YP_661038.1 KEGG: vvy:VVA1407 hypothetical protein YP_661039.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_A0450 enoyl-CoA hydratase/isomerase YP_661040.1 PFAM: regulatory protein, MarR; KEGG: bur:Bcep18194_B1526 transcriptional regulator, MarR family YP_661041.1 KEGG: cps:CPS_0808 hypothetical protein YP_661044.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: ade:Adeh_4242 phospholipase D/transphosphatidylase YP_661045.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bba:Bd1711 hypothetical protein YP_661046.1 PFAM: UspA; KEGG: son:SO3681 universal stress protein family YP_661047.1 KEGG: ilo:IL2066 hypothetical protein YP_661048.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: dps:DP2240 probable methionine aminopeptidase, MAP YP_661049.1 PFAM: zinc/iron permease; KEGG: dar:Daro_1606 zinc transporter ZIP YP_661050.1 KEGG: tcx:Tcr_0865 hypothetical protein YP_661051.1 KEGG: hma:rrnAC0761 hypothetical protein YP_661052.1 PFAM: FG-GAP; KEGG: gvi:gll3447 hypothetical protein YP_661053.1 PFAM: protein of unknown function DUF1486; KEGG: fnu:FN1222 hypothetical protein YP_661054.1 PFAM: Endoribonuclease L-PSP; KEGG: atc:AGR_L_3105 hypothetical protein YP_661055.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aminotransferase, class V; KEGG: xcb:XC_0411 isopenicillin N epimerase YP_661056.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase LeuA allosteric (dimerisation) domain; KEGG: rso:RSp0322 2-isopropylmalate synthase YP_661057.1 PFAM: regulatory proteins, AsnC/Lrp; KEGG: dar:Daro_0512 regulatory proteins, AsnC/Lrp YP_661058.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: ilo:IL0796 alcohol dehydrogenase YP_661060.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: vpa:VP1743 hypothetical protein YP_661061.1 KEGG: mca:MCA0409 lipoprotein, putative YP_661062.1 PFAM: aminotransferase, class I and II; KEGG: blo:BL1741 probable aspartate aminotransferase YP_661063.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: hch:HCH_05457 outer membrane receptor for ferrienterochelin and colicins YP_661064.1 KEGG: hch:HCH_05459 hypothetical protein YP_661065.1 PFAM: periplasmic binding protein; KEGG: ilo:IL0113 ABC-type hemin transport system, periplasmic component YP_661066.1 PFAM: transport system permease protein; KEGG: ilo:IL0114 ABC-type hemin transport system, pemease component YP_661067.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: hch:HCH_05463 ABC-type hemin transport system, ATPase component YP_661068.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: ilo:IL0116 uncharacterized metal-binding protein YP_661069.1 PFAM: glycoside hydrolase, family 24; KEGG: cvi:CV0727 probable phage-related lysozyme YP_661070.1 PFAM: Ion transport 2; KEGG: ppu:PP3293 hypothetical protein YP_661072.1 PFAM: beta-lactamase-like; KEGG: cps:CPS_1284 metallo-beta-lactamase family protein YP_661073.1 PFAM: Abortive infection protein; KEGG: bcz:BCZK2732 CAAX amino terminal protease family YP_661074.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: lpp:lpp0348 hypothetical protein YP_661077.1 PFAM: PKD domain containing protein peptidase-like; KEGG: ade:Adeh_2204 PKD YP_661079.1 PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: dre:337685 O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) YP_661080.1 PFAM: protein of unknown function DUF1330; KEGG: bja:blr8010 hypothetical protein YP_661081.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ana:all5023 probable hydrolase YP_661082.1 PFAM: aldehyde dehydrogenase; KEGG: ana:all5022 aldehyde dehydrogenase YP_661083.1 PFAM: major facilitator superfamily MFS_1; KEGG: bcl:ABC0649 major facilitator (MFS) superfamily protein YP_661084.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity YP_661085.1 PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: reu:Reut_B4699 regulatory protein GntR, HTH:UbiC transcription regulator-associated YP_661086.1 PFAM: MmgE/PrpD; KEGG: pae:PA0881 hypothetical protein YP_661087.1 PFAM: MmgE/PrpD; KEGG: bpe:BP3842 hypothetical protein YP_661088.1 KEGG: bfs:BF1700 putative phenylacetate-coenzyme A ligase YP_661089.1 PFAM: Amidase; KEGG: cpj:CPj0003 Glu tRNA Gln amidotransferae (A subunit) YP_661092.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: mlo:mll1582 probable transcriptional regulator YP_661093.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sme:SMc04442 putative acetyltransferase protein YP_661094.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20 peptidase dimerisation; KEGG: eli:ELI_13895 hypothetical protein YP_661095.1 PFAM: peptidase M14, carboxypeptidase A; KEGG: cps:CPS_2692 zinc carboxypeptidase family protein YP_661096.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ilo:IL1415 outer membrane protein YP_661097.1 PFAM: FecR protein; KEGG: cps:CPS_0244 putative regulatory protein YP_661098.1 PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: pfl:PFL_3156 RNA polymerase sigma-70 factor, ECF subfamily YP_661099.1 PFAM: NUDIX hydrolase; KEGG: vpa:VPA0218 hypothetical protein YP_661100.1 PFAM: thiopurine S-methyltransferase; KEGG: cps:CPS_3096 thiopurine S-methyltransferase family protein YP_661102.1 KEGG: hch:HCH_05761 hypothetical protein YP_661103.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: yps:YPTB2818 two-component system response regulator YP_661104.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: gsu:GSU3119 sensor histidine kinase YP_661105.1 KEGG: pca:Pcar_0362 hypothetical protein YP_661107.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: pae:PA3540 GDP-mannose 6-dehydrogenase AlgD YP_661108.1 PFAM: 4-vinyl reductase, 4VR; KEGG: cps:CPS_3609 hypothetical protein YP_661109.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: cps:CPS_3608 sensor histidine kinase YP_661110.1 PFAM: response regulator receiver; KEGG: son:SO2541 response regulator YP_661111.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: hch:HCH_04025 signal transduction histidine kinase YP_661112.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: vch:VC1089 periplasmic binding protein-related protein YP_661113.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein, MerR response regulator receiver; KEGG: son:SO2540 response regulator YP_661114.1 PFAM: EAL response regulator receiver; KEGG: vvy:VVA0651 GGDEF family protein YP_661115.1 PFAM: Smr protein/MutS2; KEGG: cps:CPS_3153 hypothetical protein YP_661116.1 involved in methylation of ribosomal protein L3 YP_661117.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_661118.1 PFAM: nucleoside:H+ symporter major facilitator superfamily MFS_1; KEGG: cps:CPS_3149 putative membrane protein YP_661119.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: cps:CPS_4529 cold-shock DNA-binding domain family protein YP_661120.1 converts asparagine to aspartate and ammonia YP_661122.1 PFAM: dienelactone hydrolase; KEGG: cps:CPS_4005 carboxymethylenebutenolidase family protein YP_661123.1 PFAM: protein of unknown function DUF1255; KEGG: pfl:PFL_4201 hypothetical protein YP_661124.1 KEGG: cps:CPS_4834 hypothetical protein YP_661125.1 KEGG: cps:CPS_2550 hypothetical protein YP_661126.1 PFAM: protein of unknown function DUF985; KEGG: pfo:Pfl_2733 protein of unknown function DUF985 YP_661127.1 KEGG: cps:CPS_2161 hypothetical protein YP_661128.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: cps:CPS_4968 peptidyl-prolyl cis-trans isomerase, cyclophilin-type YP_661129.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_661130.1 TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: pha:PSHAa1020 lipoate-protein ligase B YP_661131.1 PFAM: protein of unknown function DUF493; KEGG: ilo:IL0958 hypothetical protein YP_661132.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 Penicillin-binding protein 5-like; KEGG: cps:CPS_1712 D-alanyl-D-alanine carboxypeptidase YP_661133.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A Sporulation related; KEGG: cps:CPS_1713 putative rare lipoprotein A YP_661134.1 TIGRFAM: lytic murein transglycosylase B; KEGG: ilo:IL0955 membrane-bound lytic murein transglycosylase B YP_661135.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: cps:CPS_1714 rod shape-determining protein RodA YP_661136.1 PFAM: penicillin-binding protein, transpeptidase Penicillin-binding protein, dimerisation domain; KEGG: cps:CPS_1715 penicillin-binding protein YP_661137.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_661138.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: son:SO1170 iojap domain protein YP_661139.1 KEGG: yps:YPTB1100 nicotinic acid mononucleotide adenyltransferase; TIGRFAM: cytidyltransferase-related domain nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase YP_661140.1 KEGG: pha:PSHAa1029 DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta YP_661141.1 PFAM: Rare lipoprotein B; KEGG: cps:CPS_1721 rare lipoprotein B YP_661142.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_661143.1 PFAM: peptidase S16, lon-like; KEGG: pha:PSHAa1033 ATP-dependent protease YP_661144.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1995 peptidyl-prolyl cis-trans isomerase, FkbP family YP_661145.1 PFAM: protein of unknown function UPF0044; KEGG: ppr:PBPRA0602 putative RNA-binding protein containing KH domain YP_661146.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: vfi:VF0478 23S rRNA Um2552 2'-O-methyltransferase YP_661147.1 KEGG: ppr:PBPRA0604 putative cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41 AAA ATPase, central region peptidase M41, FtsH extracellular ATPase associated with various cellular activities, AAA_5; SMART: ATPase YP_661148.1 KEGG: yps:YPTB0475 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS YP_661149.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_661150.1 PFAM: triosephosphate isomerase; KEGG: tcx:Tcr_0815 triosephosphate isomerase YP_661151.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: pha:PSHAa0874 protein-export membrane protein SecG(general secretory pathway) YP_661152.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMb20630 putative sugar uptake ABC transporter ATP-binding protein YP_661153.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_661154.1 Essential for efficient processing of 16S rRNA YP_661155.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_661156.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_661157.1 KEGG: sil:SPO0313 glyoxalase family protein YP_661158.1 TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: regulatory protein, MerR; KEGG: sil:SPO0314 redox-sensitive transcriptional activator SoxR YP_661159.1 PFAM: protein of unknown function DUF890; KEGG: vfi:VFA1153 methyltransferase YP_661160.1 PFAM: transferase hexapeptide repeat; KEGG: ecc:c0577 maltose O-acetyltransferase YP_661161.1 PFAM: heat shock protein DnaJ-like; KEGG: ilo:IL1722 DnaJ-related protein YP_661162.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: bfs:BF3021 putative peptidyl-dipeptidase YP_661163.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_661164.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis YP_661165.1 PFAM: protein of unknown function DUF1275; KEGG: ilo:IL0299 hypothetical protein YP_661166.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase Chorismate mutase; KEGG: cps:CPS_1221 chorismate mutase / prephenate dehydratase YP_661167.1 PFAM: response regulator receiver; KEGG: son:SO0549 chemotaxis protein CheY/response regulator receiver domain protein YP_661168.1 PFAM: translation initiation factor SUI1; KEGG: vfi:VFA0573 protein translation initiation factor 1 (IF-1) (or SUI1) YP_661169.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pha:PSHAa0953 anti-sigma factor antagonist YP_661170.1 PFAM: response regulator receiver Stage II sporulation E; SMART: Protein phosphatase 2C-like; KEGG: pha:PSHAa0954 response regulator YP_661171.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0920 acetyltransferase, GNAT family YP_661172.1 PFAM: extracellular solute-binding protein, family 1; KEGG: ilo:IL1059 ABC-type Fe3+ transport system, periplasmic component YP_661173.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ilo:IL1060 ABC-type Fe3+ transport system, permease component YP_661174.1 PFAM: ABC transporter related Transport-associated OB; SMART: ATPase; KEGG: nmu:Nmul_A0730 ABC transporter related YP_661175.1 PFAM: protein of unknown function DUF1332; KEGG: pha:PSHAa2887 hypothetical protein YP_661176.1 KEGG: xcb:XC_3869 hypothetical protein YP_661177.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: sbo:SBO_2584 putative 2-component sensor protein YP_661179.1 PFAM: response regulator receiver sigma-54 factor, interaction region helix-turn-helix, Fis-type ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: stm:STM2562 putative transcriptional regulator of two-component regulator protein (EBP familiiy) YP_661180.1 KEGG: sbo:SBO_2355 pseudouridylate synthase I; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase YP_661181.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: cps:CPS_3802 acetyl-CoA carboxylase, carboxyl transferase, beta subunit YP_661182.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; KEGG: sec:SC2367 multifunctional folylpolyglutamate synthase; dihydrofolate synthase, also has formylTHF polyglutamate synthase activity YP_661183.1 PFAM: Sporulation related; KEGG: cps:CPS_3800 DedD protein YP_661184.1 PFAM: Colicin V production protein; KEGG: ilo:IL1013 uncharacterized membrane protein YP_661185.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_661186.1 PFAM: protein of unknown function DUF1282; KEGG: son:SO1787 hypothetical protein YP_661187.1 PFAM: biotin/lipoyl attachment secretion protein HlyD; KEGG: rpb:RPB_0171 secretion protein HlyD YP_661188.1 PFAM: ABC transporter related ABC-2 type transporter; SMART: ATPase; KEGG: pae:PA5231 putative ABC-2 type transport system permease/ATP-binding protein YP_661189.1 PFAM: ABC-2 type transporter; KEGG: spt:SPA3436 putative ABC superfamily (atp_bind/membrane) transport protein YP_661190.1 PFAM: tRNA-hydroxylase; KEGG: pha:PSHAa2068 tRNA-hydroxylase YP_661191.1 KEGG: vpa:VPA0123 putative hydrolase YP_661192.1 PFAM: DoxX; KEGG: son:SO2710 hypothetical protein YP_661193.1 PFAM: nitroreductase; KEGG: pha:PSHAa1411 nitroreductase YP_661194.1 PFAM: helicase-like DEAD/DEAH box helicase-like; KEGG: son:SO2838 ATP-dependent RNA helicase, DEAD box family YP_661195.1 KEGG: pha:PSHAa1446 succinyl-CoA transferase, beta subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase YP_661196.1 KEGG: pha:PSHAa2943 succinyl-CoA transferase, alpha subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase YP_661197.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pae:PA1998 probable transcriptional regulator YP_661198.1 KEGG: cps:CPS_1199 hypothetical protein YP_661199.1 PFAM: ATP-binding region, ATPase-like; KEGG: ilo:IL1710 signal transduction histidine kinase YP_661200.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation YP_661201.1 KEGG: pha:PSHAa1163 L-serine deaminase I; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain serine dehydratase beta chain YP_661202.1 PFAM: NUDIX hydrolase; KEGG: ilo:IL1707 NTP pyrophosphohydrolase, NUDIX family YP_661203.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein Anthranilate synthase component I-like; KEGG: cps:CPS_3614 para-aminobenzoate synthase, component I YP_661204.1 TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: pha:PSHAa1166 fumarate hydratase, class I YP_661205.1 PFAM: protein of unknown function DUF195; KEGG: son:SO2041 hypothetical protein YP_661206.1 PFAM: pseudouridine synthase; KEGG: pha:PSHAa1206 23S rRNA pseudouridylate synthase YP_661207.1 KEGG: neu:NE1699 hypothetical protein YP_661208.1 KEGG: cps:CPS_2207 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease RNA binding S1 KH, type 1; SMART: KH YP_661209.1 PFAM: Aldose 1-epimerase; KEGG: vfi:VF0912 aldose 1-epimerase-like protein YP_661210.1 KEGG: vch:VC2000 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_661211.1 amylomaltase; acts to release glucose from maltodextrins YP_661212.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_661213.1 KEGG: sru:SRU_0849 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13-like alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain YP_661214.1 KEGG: hch:HCH_02302 conserved domain frequently associated with peptide methionine sulfoxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B YP_661215.1 KEGG: pha:PSHAa1901 hypothetical protein YP_661216.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent YP_661217.1 PFAM: peptidase M14, carboxypeptidase A; KEGG: pha:PSHAa1899 zinc carboxypeptidase domain protein YP_661218.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: pha:PSHAa1898 Na(+)-linked D-alanine glycine permease YP_661219.1 KEGG: cps:CPS_2564 hypothetical protein YP_661220.1 PFAM: protein of unknown function DUF1315; KEGG: pha:PSHAa1896 hypothetical protein YP_661221.1 KEGG: cps:CPS_2566 hypothetical protein YP_661222.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 pseudouridine synthase; KEGG: cps:CPS_0916 RNA pseudouridine synthase family protein YP_661223.1 PFAM: Citrate transporter TrkA-C TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: cps:CPS_2144 putative transporter YP_661224.1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ YP_661225.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: pha:PSHAa0208 3',5' adenosine diphosphate 3' phosphatase YP_661226.1 PFAM: adenylylsulfate kinase; KEGG: bcl:ABC0614 adenylylsulfate kinase YP_661227.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_661228.1 PFAM: EAL; KEGG: cps:CPS_3464 EAL domain protein YP_661229.1 TIGRFAM: SSS sodium solute transporter superfamily sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: cps:CPS_3463 proline/sodium symporter YP_661230.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV0076 probable ElaA protein YP_661231.1 KEGG: cps:CPS_3166 hypothetical protein YP_661232.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_661233.1 KEGG: cps:CPS_3164 BatD protein YP_661234.1 PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: cps:CPS_3163 TPR domain protein YP_661235.1 PFAM: von Willebrand factor, type A; KEGG: ilo:IL0998 uncharacterized protein containing a von Willebrand factor type A (vWA) domain YP_661236.1 KEGG: son:SO3092 hypothetical protein YP_661237.1 PFAM: protein of unknown function DUF58; KEGG: cps:CPS_3160 hypothetical protein YP_661238.1 PFAM: ATPase associated with various cellular activities, AAA_3 ATPase associated with various cellular activities, AAA_5; KEGG: ilo:IL0995 MoxR-like ATPase YP_661239.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth YP_661240.1 multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate YP_661241.1 KEGG: son:SO3084 sensory box protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL Two component regulator propeller Two component regulator three Y PAS fold-3 PAS fold-4 PAS fold; SMART: PAC motif YP_661242.1 PFAM: peptidase M16-like; KEGG: son:SO3083 peptidase, M16 family YP_661243.1 TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: vpa:VP2205 phosphohistidine phosphatase YP_661244.1 PFAM: CBS domain containing protein protein of unknown function DUF21 transporter-associated region; KEGG: son:SO1354 hemolysin protein, putative YP_661245.1 PFAM: cytochrome c assembly protein; KEGG: vpa:VP2535 hypothetical protein YP_661246.1 KEGG: cps:CPS_4073 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G-domain Signal peptide binding (SRP54) M-domain; SMART: ATPase YP_661247.1 PFAM: Modulator of Rho-dependent transcription termination; KEGG: vvy:VVA1468 hypothetical protein YP_661248.1 KEGG: dde:Dde_3600 hypothetical protein YP_661249.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pha:PSHAb0014 putative transcriptional regulatory protein (LysR family) YP_661250.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: ilo:IL0315 predicted NADP-dependent oxidoreductases YP_661251.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: son:SO3318 transcriptional regulator, LysR family YP_661252.1 PFAM: Pirin-like Cupin 2, conserved barrel; KEGG: vpa:VPA0042 hypothetical protein YP_661253.1 PFAM: DoxX; KEGG: cps:CPS_1770 DoxD-like family protein YP_661254.1 PFAM: Fibronectin, type III peptidase M28; KEGG: ilo:IL1071 probable aminopeptidase fused to fibronectin type 3 domain YP_661255.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL Two component regulator propeller Two component regulator three Y PAS fold-3; KEGG: cps:CPS_4985 sensory box/GGDEF/EAL domain protein YP_661257.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: tcx:Tcr_1062 diguanylate cyclase (GGDEF domain) YP_661258.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: hch:HCH_03217 protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin YP_661259.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: cps:CPS_3482 peptidyl-prolyl cis-trans isomerase C YP_661260.1 PFAM: class II aldolase/adducin-like; KEGG: pha:PSHAa0286 hypothetical protein YP_661261.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: cps:CPS_1173 mandelate racemase/muconate lactonizing enzyme family protein YP_661262.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aminotransferase, class V; KEGG: pae:PA2394 probable aminotransferase YP_661263.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA YP_661264.1 PFAM: peptidase M23B; KEGG: lic:LIC10721 hypothetical protein YP_661265.1 PFAM: MaoC-like dehydratase; KEGG: hch:HCH_01683 acyl dehydratase YP_661266.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC3194 TonB-dependent receptor YP_661267.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: cya:CYA_1048 putative pterin-4A-carbinolamine dehydratase YP_661268.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_661269.1 KEGG: cps:CPS_2202 transcription termination factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 NusA-like; SMART: KH YP_661270.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_661271.1 PFAM: ribosome-binding factor A; KEGG: cps:CPS_2204 ribosome-binding factor A YP_661272.1 KEGG: vpa:VP2454 tRNA pseudouridine 55 synthase; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB-like YP_661273.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_661275.1 KEGG: cps:CPS_4821 hypothetical protein YP_661276.1 PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase; KEGG: son:SO0754 ABC transporter, ATP-binding protein YP_661277.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: cps:CPS_4684 GGDEF domain protein YP_661278.1 PFAM: protein of unknown function DUF330; KEGG: cps:CPS_3078 putative lipoprotein YP_661279.1 PFAM: Mammalian cell entry related; KEGG: cps:CPS_3077 putative paraquat-inducible protein B YP_661280.1 TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; KEGG: cps:CPS_3076 integral membrane protein, PqiA family YP_661281.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: vch:VC1041 phosphotyrosine protein phosphatase YP_661282.1 KEGG: pha:PSHAb0559 phospho-2-dehydro-3-deoxyheptonate aldolase (phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase); TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase, class II YP_661283.1 PFAM: FeoA YP_661284.1 TIGRFAM: ferrous iron transport protein B; PFAM: GTP-binding protein, HSR1-related nucleoside recognition; KEGG: rso:RSp0251 probable ferrous iron transport B transmembrane protein YP_661285.1 PFAM: protein of unknown function DUF88; KEGG: cps:CPS_0134 hypothetical protein YP_661286.1 KEGG: pha:PSHAa1300 hypothetical protein YP_661287.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: ecc:c0906 hypothetical ABC transporter ATP-binding protein YbiT YP_661288.1 PFAM: SmpA/OmlA; KEGG: son:SO1476 small protein A YP_661289.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC protein-like; KEGG: vvu:VV10367 DNA repair protein RecN YP_661290.1 PFAM: ATP-NAD/AcoX kinase; KEGG: pha:PSHAa1220 NAD kinase YP_661291.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides YP_661292.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter Citrate transporter; KEGG: ilo:IL2396 Na+/dicarboxylate symporter YP_661293.1 KEGG: mba:Mbar_A1318 hypothetical protein YP_661294.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: rpb:RPB_0879 transcriptional regulator, LysR family YP_661295.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: amine oxidase; KEGG: par:Psyc_1152 flavin monoamine oxidase related protein YP_661296.1 PFAM: cytochrome c, class I; KEGG: sil:SPOA0151 cytochrome c family protein YP_661297.1 PFAM: Endoribonuclease L-PSP; KEGG: xcb:XC_0888 TdcF protein YP_661298.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC1093 TonB-dependent receptor, putative YP_661299.1 KEGG: ilo:IL1521 hypothetical protein YP_661300.1 TIGRFAM: transcription-repair coupling factor; PFAM: helicase-like transcription factor CarD TRCF type III restriction enzyme, res subunit DEAD/DEAH box helicase-like; KEGG: pha:PSHAa1836 transcription-repair ATP-dependent coupling factor YP_661301.1 KEGG: cps:CPS_3480 hypothetical protein YP_661302.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: ppr:PBPRA2390 putative ABC transporter integral membrane subunit YP_661303.1 KEGG: cps:CPS_3834 putative hypoxanthine phosphoribosyltransferase YP_661304.1 PFAM: YHS; KEGG: cps:CPS_0814 hypothetical protein YP_661305.1 PFAM: protein of unknown function DUF419; KEGG: hch:HCH_06934 hypothetical protein YP_661306.1 PFAM: CsbD-like; KEGG: pha:PSHAa2218 hypothetical protein YP_661307.1 PFAM: protein of unknown function DUF1328; KEGG: pha:PSHAa0537 hypothetical protein YP_661310.1 PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAb0050 hypothetical protein YP_661311.1 KEGG: lmf:LMOf2365_2347 hypothetical protein YP_661313.1 KEGG: eli:ELI_11880 FMN oxidoreductase YP_661314.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_661315.1 PFAM: cyclase/dehydrase; KEGG: vpa:VP0645 hypothetical protein YP_661316.1 PFAM: protein of unknown function UPF0125; KEGG: ilo:IL0896 hypothetical protein YP_661317.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO1579 hypothetical protein YP_661318.1 PFAM: protein of unknown function DUF299; KEGG: cps:CPS_3013 hypothetical protein YP_661319.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_661321.1 PFAM: FAD linked oxidase-like; KEGG: ppr:PBPRA1294 hypothetical Fe-S oxidoreductase YP_661322.1 PFAM: beta-lactamase-like RNA-metabolising metallo-beta-lactamase; KEGG: pae:PA3614 metallo-beta-lactamase family protein YP_661323.1 PFAM: GCN5-related N-acetyltransferase acetyl-CoA hydrolase/transferase; KEGG: ilo:IL2297 4-hydroxybutyrate CoA-transferase (N-terminal) fused to acetyltransferase (C-terminal) domain of GNAT superfamily YP_661324.1 PFAM: histone deacetylase superfamily; KEGG: eba:ebA775 hypothetical protein YP_661325.1 KEGG: nmu:Nmul_A2207 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4 PAS fold; SMART: PAS YP_661326.1 KEGG: cbu:CBU_1950 hypothetical protein YP_661327.1 KEGG: sil:SPO3064 hypothetical protein YP_661328.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: pst:PSPTO0754 alcohol dehydrogenase, zinc-containing YP_661329.1 KEGG: ava:Ava_4197 hypothetical protein YP_661330.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: pha:PSHAa1831 AhpC-TSA YP_661331.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: vvy:VV2615 exonuclease V gamma subunit YP_661332.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: pha:PSHAa1858 exonuclease V, beta chain with RecC and RecD: 5' and 3' nuclease, ATPase, recombinase, helicase YP_661333.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: vpa:VP2373 exodeoxyribonuclease V, 67 kDa subunit YP_661335.1 KEGG: vch:VC1686 hypothetical protein YP_661336.1 KEGG: pha:PSHAb0046 putative orphan protein YP_661337.1 TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V aromatic amino acid beta-eliminating lyase/threonine aldolase Fe-S metabolism associated SufE; KEGG: cps:CPS_2211 putative selenocysteine lyase YP_661338.1 PFAM: isochorismatase hydrolase; KEGG: dps:DP1719 hypothetical protein YP_661339.1 KEGG: rso:RSc0798 putative purine nucleoside permease protein YP_661340.1 KEGG: cps:CPS_0070 hypothetical protein YP_661341.1 KEGG: ilo:IL0571 hypothetical protein YP_661342.1 KEGG: pha:PSHAa1929 hypothetical protein YP_661343.1 KEGG: pha:PSHAa0636 hypothetical protein YP_661344.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: son:SO4457 GGDEF domain protein YP_661345.1 KEGG: pha:PSHAb0237 putative glycosyltransferase YP_661346.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: gsu:GSU2632 GGDEF domain protein YP_661347.1 TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE-like; KEGG: rso:RS03188 2-dehydropantoate 2-reductase YP_661348.1 PFAM: protein of unknown function DUF540; KEGG: son:SO2899 cysZ protein YP_661349.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC protein-like; KEGG: ilo:IL1702 chromosome segregation ATPase, sms YP_661350.1 TIGRFAM: cell division protein ZipA; PFAM: ZipA-like, FtsZ-binding region; KEGG: cps:CPS_3467 putative cell division protein ZipA YP_661351.1 KEGG: pha:PSHAa1083 NAD-dependent DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT NAD-dependent DNA ligase zinc-finger, NAD-dependent DNA ligase C4-type NAD-dependent DNA ligase, OB-fold; SMART: Helix-hairpin-helix DNA-binding, class 1 YP_661352.1 KEGG: ilo:IL1450 hypothetical protein YP_661353.1 KEGG: ilo:IL1515 hypothetical protein YP_661354.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase-like ComEC/Rec2-related protein; KEGG: cps:CPS_2124 DNA internalization-related competence protein ComEC/Rec2 YP_661355.1 KEGG: ilo:IL1513 ABC-type multidrug transport system, ATPase and permease components; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase YP_661356.1 KEGG: hin:HI0059 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase YP_661357.1 PFAM: protein of unknown function DUF343; KEGG: ppr:PBPRA2383 conserved hypothetical protein YP_661358.1 KEGG: ecj:JW0901 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase YP_661359.1 catalyzes the formation of pyruvate from D-cysteine YP_661360.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: vvy:VV1542 GGDEF family protein YP_661361.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ppr:PBPRB0044 hypothetical protein YP_661362.1 KEGG: vch:VC2146 hypothetical protein YP_661364.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ilo:IL1093 transcriptional regulator, LysR family YP_661366.1 PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: vch:VC2311 HesA/MoeB/ThiF family protein YP_661367.1 KEGG: yps:YPTB1011 mannose-1-phosphate guanylyltransferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II Nucleotidyl transferase Cupin 2, conserved barrel YP_661368.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sec:SC2105 phosphomannomutase in colanic acid gene cluster YP_661369.1 KEGG: ilo:IL1508 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase YP_661370.1 PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: pha:PSHAa1651 putative succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhD YP_661371.1 KEGG: pha:PSHAa1650 putative succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhC YP_661372.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_661373.1 TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: yps:YPTB1146 succinate dehydrogenase iron-sulfur protein YP_661374.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_661375.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment catalytic domain of components of various dehydrogenase complexes E3 binding; KEGG: pha:PSHAa1646 dihydrolipoyltranssuccinate transferase, component of the 2-oxoglutarate dehydrogenase complex YP_661376.1 catalyzes the interconversion of succinyl-CoA and succinate YP_661377.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding ATP-citrate lyase/succinyl-CoA ligase; KEGG: ilo:IL1500 succinyl-CoA synthetase, alpha subunit YP_661378.1 PFAM: peptidase S15 peptidase S9, prolyl oligopeptidase active site region; KEGG: xcv:XCV0270 putative aminopeptidase precursor YP_661379.1 PFAM: FAD linked oxidase-like; KEGG: sme:SMb21415 putative oxidoreductase, oxygen dependent, FAD-dependent protein YP_661380.1 PFAM: helix-turn-helix, HxlR type; KEGG: mlo:mlr1855 hypothetical protein YP_661381.1 KEGG: psp:PSPPH_3703 L-sorbosone dehydrogenase YP_661382.1 SMART: extracellular solute-binding protein, family 3; KEGG: mag:amb0186 ABC-type amino acid transport/signal transduction systems YP_661383.1 PFAM: luciferase-like; KEGG: ret:RHE_CH03476 probable oxidoreductase protein YP_661384.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family YP_661385.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC0991 TonB-dependent receptor YP_661386.1 PFAM: Phosphoglycerate mutase; KEGG: bur:Bcep18194_B3039 phosphoglycerate/bisphosphoglycerate mutase YP_661387.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: bja:blr2989 putative acyl-CoA dehydrogenase YP_661388.1 PFAM: aminoglycoside phosphotransferase; KEGG: bur:Bcep18194_B3038 aminoglycoside phosphotransferase YP_661389.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: pfo:Pfl_5445 zinc-containing alcohol dehydrogenase superfamily YP_661390.1 KEGG: son:SO3645 hypothetical protein YP_661391.1 PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: sma:SAV611 putative beta-hydroxylase YP_661392.1 PFAM: protein of unknown function DUF924; KEGG: cps:CPS_2824 hypothetical protein YP_661393.1 PFAM: peptidase S9, prolyl oligopeptidase active site region WD40-like beta Propeller; KEGG: pha:PSHAb0063 putative peptidase YP_661394.1 PFAM: protein of unknown function UPF0153; KEGG: pfo:Pfl_4743 protein of unknown function UPF0153 YP_661395.1 KEGG: hch:HCH_05761 hypothetical protein YP_661396.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0977 TonB-dependent receptor YP_661397.1 PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: cps:CPS_0978 transcription regulator, LacI family YP_661398.1 PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_0981 hypothetical protein YP_661399.1 PFAM: glycoside hydrolase, family 37; KEGG: cbu:CBU_1346 trehalase YP_661400.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0238 TonB-dependent receptor YP_661401.1 SMART: Peptidase M14, carboxypeptidase A; KEGG: ilo:IL0199 conserved secreted Zn-dependent enzyme from deacylase/carboxypeptidase superfamily YP_661402.1 PFAM: putative esterase; KEGG: ppr:PBPRA0783 putative esterase YP_661403.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: nmu:Nmul_A2272 zinc-containing alcohol dehydrogenase superfamily YP_661405.1 PFAM: amidohydrolase 2; KEGG: cps:CPS_1174 conserved hypothetical protein YP_661406.1 PFAM: short-chain dehydrogenase/reductase SDR 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: cps:CPS_1175 oxidoreductase, short-chain dehydrogenase/reductase family YP_661407.1 KEGG: gsu:GSU0250 hypothetical protein YP_661408.1 KEGG: vch:VC2620 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family MiaB-like tRNA modifying enzyme YliG; PFAM: protein of unknown function UPF0004 Radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_661409.1 KEGG: pst:PSPTO3229 filamentous hemagglutinin, intein-containing, putative YP_661410.1 PFAM: helix-turn-helix, AraC type response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: bth:BT3334 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') YP_661411.1 PFAM: L-lactate permease; KEGG: ppr:PBPRA2223 hypothetical L-lactate permease (LctP) YP_661412.1 KEGG: dps:DP1779 hypothetical protein YP_661413.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: xac:XAC1186 excinuclease ABC subunit A YP_661414.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: xcb:XC_2484 TonB-dependent receptor YP_661415.1 PFAM: sulfatase; KEGG: rba:RB2135 heparan N-sulfatase YP_661416.1 PFAM: sulfatase; KEGG: bth:BT3333 arylsulfatase A precursor (ASA) YP_661417.1 TIGRFAM: integron integrase; PFAM: phage integrase; KEGG: pha:PSHAa1461 integrase YP_661419.1 PFAM: transposase, IS111A/IS1328/IS1533 transposase IS116/IS110/IS902; KEGG: cps:CPS_2742 ISCps7, transposase YP_661420.1 PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase YP_661422.1 PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAb0050 hypothetical protein YP_661423.1 KEGG: ppr:PBPRB1699 hypothetical transposase YP_661425.1 PFAM: protein of unknown function DUF1080; KEGG: nar:Saro_0775 protein of unknown function DUF1080 YP_661426.1 PFAM: glycoside hydrolase family 2, sugar binding; KEGG: bfr:BF3493 sialic acid-specific 9-O-acetylesterase YP_661427.1 KEGG: sco:SCO5300 hypothetical protein YP_661428.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity YP_661429.1 PFAM: Pyrrolo-quinoline quinone; KEGG: cps:CPS_1887 quinoprotein alcohol dehydrogenase YP_661430.1 SMART: extracellular solute-binding protein, family 3; KEGG: cps:CPS_1889 hypothetical protein YP_661431.1 KEGG: cps:CPS_1890 cytochrome c550 YP_661432.1 KEGG: cps:CPS_1891 hypothetical protein YP_661433.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: cps:CPS_1892 hypothetical protein YP_661434.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: cps:CPS_1893 ABC transporter, ATP-binding protein YP_661435.1 PFAM: ABC-2 type transporter; KEGG: cps:CPS_1894 putative daunorubicin resistance ABC transporter, permease protein YP_661436.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_1926 TonB-dependent receptor YP_661437.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_1927 TonB dependent receptor YP_661438.1 KEGG: cps:CPS_1928 putative sulfonate ABC transporter, periplasmic sulfonate-binding protein YP_661439.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cps:CPS_1929 putative sulfonate ABC transporter, permease protein YP_661440.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: cps:CPS_1930 putative sulfonate ABC transporter, ATP-binding protein YP_661441.1 KEGG: cps:CPS_1702 hypothetical protein YP_661442.1 KEGG: cps:CPS_1931 hypothetical protein YP_661443.1 PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: pca:Pcar_0984 hypothetical protein YP_661444.1 PFAM: regulatory protein, LuxR response regulator receiver; KEGG: cps:CPS_1932 DNA-binding response regulator YP_661445.1 KEGG: cps:CPS_1882 sensory box sensor histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4; SMART: PAS PAC motif Response regulator receiver YP_661446.1 PFAM: Domain of unknown function DUF1745; KEGG: cps:CPS_1883 hypothetical protein YP_661447.1 PFAM: FMN-binding; KEGG: cps:CPS_1884 putative regulatory protein NosR YP_661448.1 PFAM: aldehyde dehydrogenase; KEGG: cps:CPS_1885 aldehyde dehydrogenase family protein YP_661449.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase Male sterility-like; KEGG: pha:PSHAa2082 hypothetical protein YP_661450.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3403 ribosomal subunit interface protein YP_661451.1 KEGG: pha:PSHAa2212 hypothetical protein YP_661452.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pae:PA2551 probable transcriptional regulator YP_661453.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_661454.1 KEGG: ilo:IL1326 hypothetical protein YP_661456.1 TIGRFAM: cysteine synthases cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: mba:Mbar_A2422 cysteine synthase YP_661457.1 PFAM: regulatory proteins, AsnC/Lrp; KEGG: reu:Reut_A0453 regulatory proteins, AsnC/Lrp YP_661458.1 PFAM: Na+/H+ antiporter NhaC; KEGG: cps:CPS_4723 Na+/H+ antiporter family protein YP_661459.1 KEGG: tcx:Tcr_1715 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_661460.1 TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; KEGG: cps:CPS_3794 UDP-2,3-diacylglucosamine hydrolase YP_661461.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: yps:YPTB1034 peptidyl-prolyl cis-trans isomerase B YP_661462.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_661463.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: pfo:Pfl_1081 filamentation induced by cAMP protein Fic YP_661464.1 KEGG: pha:PSHAa1883 hypothetical protein YP_661465.1 PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAa1474 hypothetical protein YP_661466.1 KEGG: pha:PSHAb0050 hypothetical protein YP_661467.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_1846 glyoxalase family protein YP_661468.1 PFAM: Peptidoglycan-binding LysM Lytic transglycosylase, catalytic; KEGG: cps:CPS_1998 putative membrane-bound lytic murein transglycosylase YP_661469.1 PFAM: beta-lactamase-like; KEGG: neu:NE0138 metallo-beta-lactamase superfamily YP_661470.1 KEGG: cps:CPS_2000 hypothetical protein YP_661471.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_661472.1 KEGG: ppr:PBPRA1169 hypothetical Mrp protein (ATPases involved in chromosome partitioning) YP_661473.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_661474.1 PFAM: helix-turn-helix, AraC type; KEGG: vvy:VVA0468 AraC-type DNA-binding domain-containing protein YP_661475.1 PFAM: YHS; KEGG: cps:CPS_3397 hypothetical protein YP_661476.1 KEGG: son:SO1890 hypothetical protein YP_661477.1 KEGG: rba:RB3421 probable beta-agarase [precursor] YP_661478.1 PFAM: beta-lactamase; KEGG: bca:BCE2294 penicillin-binding protein, putative YP_661479.1 PFAM: Thioredoxin domain; KEGG: ilo:IL2069 thioredoxin related protein YP_661481.1 PFAM: helix-turn-helix, AraC type; KEGG: pha:PSHAa2408 transcriptional regulator (AraC/XylS) YP_661482.1 PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa2409 permease YP_661483.1 PFAM: aldehyde dehydrogenase; KEGG: pha:PSHAa2402 succinate-semialdehyde dehydrogenase YP_661484.1 PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: pha:PSHAa2492 aminopeptidase YP_661485.1 PFAM: AMP-dependent synthetase and ligase; KEGG: reu:Reut_A1398 AMP-dependent synthetase and ligase YP_661486.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bur:Bcep18194_B3036 short-chain dehydrogenase/reductase SDR YP_661487.1 PFAM: alpha/beta hydrolase fold; KEGG: ccr:CC1175 haloalkane dehalogenase, putative YP_661488.1 PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: ccr:CC3189 fatty oxidation complex, alpha subunit YP_661489.1 KEGG: eli:ELI_12090 putative 3-ketoacyl-CoA thiolase/acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase YP_661490.1 PFAM: acyl-CoA dehydrogenase-like; KEGG: hch:HCH_01686 acyl-CoA dehydrogenase YP_661491.1 PFAM: alpha/beta hydrolase fold; KEGG: reu:Reut_A1416 alpha/beta hydrolase fold YP_661492.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: pha:PSHAb0368 putative GGDEF domain membrane protein YP_661493.1 KEGG: son:SO3645 hypothetical protein YP_661494.1 PFAM: Phytanoyl-CoA dioxygenase YP_661495.1 PFAM: regulatory protein, TetR YP_661496.1 KEGG: dvu:DVU0852 extracellular solute-binding protein, putative YP_661499.1 PFAM: major facilitator superfamily MFS_1; KEGG: tth:TTC1722 multidrug resistance protein 2 YP_661500.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pfl:PFL_0942 NADH-dependent flavin oxidoreductase, Oye family YP_661501.1 PFAM: regulatory protein, TetR; KEGG: hch:HCH_05799 transcriptional regulator YP_661502.1 PFAM: RNA-binding region RNP-1 (RNA recognition motif); KEGG: ppr:PBPRB1959 hypothetical protein YP_661503.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_661504.1 PFAM: FAD dependent oxidoreductase; KEGG: tcx:Tcr_0147 FAD dependent oxidoreductase YP_661505.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS; KEGG: pha:PSHAa0482 ThiS protein YP_661506.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_661507.1 KEGG: lpp:lpp1526 thiamine-phosphate pyrophosphorylase / phosphomethylpyrimidine kinase; TIGRFAM: thiamine-phosphate pyrophosphorylase phosphomethylpyrimidine kinase; PFAM: thiamine monophosphate synthase Phosphomethylpyrimidine kinase type-1 YP_661508.1 PFAM: UBA/THIF-type NAD/FAD binding fold MoeZ/MoeB; SMART: Rhodanese-like; KEGG: yps:YPTB0561 putative protein involved in molybdopterin biosynthesis YP_661509.1 KEGG: vch:VCA0645 hypothetical protein YP_661510.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0993 TonB-dependent receptor YP_661511.1 PFAM: tryptophan halogenase; KEGG: eli:ELI_03185 tryptophan halogenase, putative YP_661512.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_1693 TonB-dependent receptor YP_661513.1 KEGG: cps:CPS_1694 putative pullulanase; TIGRFAM: alpha-1,6-glucosidases, pullulanase-type; PFAM: glycoside hydrolase, family 13-like YP_661515.1 PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase YP_661517.1 PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase YP_661520.1 PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAb0050 hypothetical protein YP_661521.1 KEGG: ppr:PBPRB1072 hypothetical transposase YP_661522.1 PFAM: transposase, IS111A/IS1328/IS1533 transposase IS116/IS110/IS902; KEGG: cps:CPS_2742 ISCps7, transposase YP_661526.1 PFAM: protein of unknown function DUF469; KEGG: vpa:VPA0178 hypothetical protein YP_661527.1 KEGG: cps:CPS_1538 hypothetical protein YP_661528.1 KEGG: vch:VCA0414 hypothetical protein YP_661529.1 PFAM: amine oxidase; KEGG: pha:PSHAa1280 hypothetical protein YP_661530.1 KEGG: cps:CPS_1639 hypothetical protein YP_661532.1 PFAM: regulatory proteins, IclR; KEGG: bps:BPSS2127 IclR transcriptional regulator protein YP_661533.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: rba:RB7491 probable L-proline 4-hydroxylase YP_661534.1 KEGG: rba:RB9882 similar to peptidylglycine monooxygenase YP_661535.1 PFAM: SapC; KEGG: cps:CPS_0240 hypothetical protein YP_661536.1 PFAM: tryptophan halogenase; KEGG: cps:CPS_0239 putative tryptophan halogenase YP_661537.1 KEGG: vpa:VPA0953 putative biofilm-associated surface protein YP_661538.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: xac:XAC0144 TonB-dependent receptor YP_661539.1 KEGG: bte:BTH_II1368 hypothetical protein YP_661540.1 PFAM: Glycosyl hydrolases family 32, N terminal; KEGG: sco:SCO3481 hypothetical protein YP_661541.1 PFAM: PfkB; KEGG: pha:PSHAa1745 ketodeoxygluconokinase YP_661542.1 TIGRFAM: sugar transporter; PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: bth:BT0436 arabinose-proton symporter YP_661543.1 KEGG: sco:SCO3487 hydrolase YP_661544.1 PFAM: methylation; KEGG: vfi:VF0366 MshA, mannose-sensitive haemaglutinin YP_661545.1 PFAM: protein kinase leucine-rich repeat; SMART: Serine/threonine protein kinase Leucine-rich repeat, typical subtype; KEGG: ppr:PBPRA2167 conserved hypothetical protein YP_661546.1 KEGG: pha:PSHAa1073 hypothetical protein YP_661547.1 KEGG: ilo:IL1414 catalase; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase YP_661548.1 TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pha:PSHAa2944 3-hydroxybutyrate dehydrogenase YP_661549.1 KEGG: bte:BTH_I2303 polyhydroxybutyrate depolymerase YP_661550.1 catalyzes the formation of O-acetyl -L-homoserine from L-homoserine and acetyl-CoA YP_661551.1 PFAM: Gluconate transporter Citrate transporter TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pha:PSHAa2946 permease YP_661552.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2947 TonB-dependent receptor YP_661553.1 PFAM: regulatory protein, LuxR response regulator receiver Bacterio-opsin activator, HTH Sigma-70, region 4 type 2; KEGG: ilo:IL2153 response regulator, LuxR family (CheY, HTH domains) YP_661554.1 PFAM: sodium/hydrogen exchanger; KEGG: ilo:IL1058 Na+/H+ antiporter YP_661555.1 KEGG: sde:Sde_3410 hypothetical protein YP_661556.1 KEGG: cps:CPS_2742 ISCps7, transposase YP_661557.1 PFAM: Na+/solute symporter response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; SMART: PAS; KEGG: ilo:IL2152 multidomain protein, contains Na+/proline symporter PutP-like domain, sensory histidine kinase and receiver domain YP_661558.1 PFAM: GrpE protein; KEGG: vpa:VP0651 GrpE YP_661559.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_661560.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_661561.1 PFAM: cytochrome c, class II; KEGG: cps:CPS_2799 cytochrome c' YP_661562.1 KEGG: pha:PSHAa1681 hypothetical protein YP_661563.1 KEGG: cps:CPS_2812 hypothetical protein YP_661564.1 affects solute and DNA transport through an unknown mechanism YP_661565.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3 YP_661566.1 PFAM: sodium:neurotransmitter symporter; KEGG: pha:PSHAa0859 sodium-dependent transporter YP_661567.1 PFAM: Na+/H+ antiporter NhaC; KEGG: pha:PSHAa1677 Na+/H+ antiporter NnaC YP_661568.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: eca:ECA2539 aminopeptidase N YP_661569.1 KEGG: pae:PA3051 hypothetical protein YP_661570.1 PFAM: protein of unknown function DUF1302; KEGG: pha:PSHAa1674 hypothetical protein YP_661571.1 PFAM: protein of unknown function DUF1329; KEGG: pha:PSHAa1673 hypothetical protein YP_661572.1 KEGG: cps:CPS_2804 BNR repeat protein YP_661573.1 KEGG: cps:CPS_2803 putative membrane protein YP_661574.1 PFAM: NAD-glutamate dehydrogenase; KEGG: pha:PSHAa1670 glutamate dehydrogenase YP_661575.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_661576.1 PFAM: protein of unknown function DUF1379; KEGG: ppr:PBPRA1768 conserved hypothetical protein YP_661577.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA YP_661578.1 PFAM: SMC protein-like ABC transporter related; SMART: ATPase; KEGG: ppr:PBPRA1771 putative ABC transporter, ATP-binding protein YP_661579.1 KEGG: pha:PSHAa1664 hypothetical protein YP_661580.1 PFAM: ribosome modulation factor; KEGG: cps:CPS_4822 ribosome modulation factor YP_661581.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP YP_661582.1 KEGG: cps:CPS_3273 hypothetical protein YP_661583.1 PFAM: SEC-C motif; KEGG: mca:MCA2786 sec-C motif domain protein YP_661585.1 PFAM: Ferric reductase-like transmembrane component-like; KEGG: cps:CPS_3632 hypothetical protein YP_661586.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_661587.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_661588.1 KEGG: xac:XAC3992 hypothetical protein YP_661589.1 KEGG: eca:ECA3034 putative phosphohydrolase YP_661590.1 PFAM: helix-turn-helix motif; KEGG: pha:PSHAa2249 DNA binding protein YP_661591.1 SMART: Metal-dependent phosphohydrolase, HD region; KEGG: bur:Bcep18194_C6634 metal-dependent phosphohydrolase YP_661592.1 KEGG: ppu:PP1960 hypothetical protein YP_661593.1 KEGG: dre:558622 similar to restin YP_661594.1 PFAM: phage integrase; KEGG: ppu:PP1962 site-specific recombinase, phage integrase family YP_661595.1 KEGG: vvu:VV13176 hypothetical protein YP_661596.1 PFAM: regulatory protein, MerR; KEGG: sde:Sde_1961 putative transcriptional regulator, MerR family YP_661597.1 PFAM: cation efflux protein; KEGG: tcx:Tcr_1855 cation efflux protein YP_661598.1 KEGG: hch:HCH_03108 hypothetical protein YP_661599.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ilo:IL2587 cation efflux system component YP_661600.1 KEGG: cps:CPS_2870 hypothetical protein YP_661601.1 PFAM: outer membrane efflux protein; KEGG: cps:CPS_1957 putative RND efflux system protein YP_661602.1 PFAM: biotin/lipoyl attachment; KEGG: cps:CPS_1958 putative RND efflux system protein, MFP subunit YP_661603.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: cps:CPS_1959 putative RND efflux system protein YP_661604.1 KEGG: cps:CPS_3233 conserved hypothetical protein YP_661605.1 KEGG: sdy:SDY_2487 putative alpha helix protein YP_661606.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor YP_661607.1 KEGG: vvy:VV2864 putative cytochrome c oxidase, subunit I YP_661608.1 PFAM: dehydrogenase, E1 component; KEGG: ilo:IL1680 alpha keto acid dehydrogenase complex, E1 component, alpha subunit YP_661609.1 PFAM: Transketolase, central region Transketolase-like; KEGG: cps:CPS_1583 2-oxoisovalerate dehydrogenase complex, E1 component, beta subunit YP_661610.1 PFAM: biotin/lipoyl attachment catalytic domain of components of various dehydrogenase complexes E3 binding; KEGG: pha:PSHAa1630 lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (Dihydrolipoyllysine-residue(2-methylpropanoyl)transferase E2) (dihydrolipoamide branched chain transacylase) (BCKAD E2 subunit) YP_661611.1 PFAM: protein of unknown function DUF519; KEGG: vvy:VV0066 hypothetical protein YP_661612.1 PFAM: protein kinase; SMART: Serine/threonine protein kinase; KEGG: hch:HCH_03684 serine/threonine protein kinase YP_661613.1 PFAM: acyl-CoA thioesterase; KEGG: pha:PSHAa0141 acyl-CoA thioesterase II YP_661614.1 KEGG: psb:Psyr_1274 transferase hexapeptide repeat YP_661615.1 PFAM: aminotransferase, class V; KEGG: son:SO4343 aminotransferase, class V YP_661617.1 PFAM: regulatory protein, MarR; KEGG: bfs:BF3633 putative MarR-family regulatory protein YP_661618.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: pha:PSHAa2778 anion transport protein (ABC superfamily, ATP-binding protein) YP_661619.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xac:XAC1227 hypothetical protein YP_661620.1 catalyzes the formation of glutamate from glutamine YP_661621.1 KEGG: pfl:PFL_4807 hypothetical protein YP_661622.1 KEGG: DSBH domain containing protein YP_661623.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_661624.1 PFAM: aminotransferase, class V; KEGG: eca:ECA3491 purine catabolism protein YP_661625.1 PFAM: protein of unknown function DUF81; KEGG: pha:PSHAa1469 hypothetical protein YP_661626.1 PFAM: gamma-glutamyltranspeptidase; KEGG: vch:VCA0558 gamma-glutamyltranspeptidase, putative YP_661627.1 PFAM: Amidase; KEGG: rpb:RPB_2085 amidase YP_661628.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_661629.1 PFAM: helix-turn-helix protein RpiR sugar isomerase (SIS); KEGG: eca:ECA3496 putative transcriptional regulator YP_661630.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_661631.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: psb:Psyr_0989 lysine exporter protein (LysE/YggA) YP_661632.1 KEGG: vvu:VV12605 hypothetical protein YP_661633.1 PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; KEGG: son:SO2352 bax protein, putative YP_661634.1 KEGG: son:SO2353 hypothetical protein YP_661635.1 PFAM: Patatin; KEGG: ilo:IL0740 alpha-beta superfamily hydrolase YP_661636.1 PFAM: PP-loop; KEGG: vch:VC1432 hypothetical protein YP_661637.1 with UspC and UspD is involved in resistance to UV irradiation YP_661638.1 KEGG: vfi:VF1307 integral membrane protein YP_661639.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: cps:CPS_1989 cytochrome oxidase maturation protein, cbb3-type YP_661640.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC copper-translocating P-type ATPase heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase-like hydrolase Heavy metal transport/detoxification protein E1-E2 ATPase-associated region; KEGG: vch:VC1437 cation transport ATPase, E1-E2 family YP_661641.1 KEGG: son:SO2360 hypothetical protein YP_661642.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: ilo:IL1300 cytochrome c oxidase, cbb3-type, subunit III YP_661643.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: vvy:VV1673 Cbb3-type cytochrome oxidase, subunit 3 YP_661644.1 CcoO; FixO YP_661645.1 CcoN; FixN YP_661647.1 TIGRFAM: bacterioferritin; PFAM: Ferritin and Dps; KEGG: son:SO1112 bacterioferritin subunit 1 YP_661648.1 TIGRFAM: bacterioferritin; PFAM: Ferritin and Dps; KEGG: son:SO1111 bacterioferritin subunit 2 YP_661650.1 PFAM: Conserved TM helix; KEGG: pfl:PFL_1874 CmpX protein YP_661651.1 PFAM: sigma-70 region 2 Sigma-70, region 4 type 2; KEGG: psb:Psyr_2096 sigma-70 region 2 YP_661652.1 PFAM: Thrombospondin type 3 repeat OmpA/MotB OmpF; KEGG: cps:CPS_0958 OmpA family protein YP_661653.1 PFAM: phospholipase A1; KEGG: ppr:PBPRA1301 putative outer membrane phospholipase A precursor YP_661654.1 PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: dar:Daro_4142 PAS YP_661656.1 TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; KEGG: son:SO1498 glucose-1-phosphate adenylyltransferase YP_661657.1 PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: pmu:PM0668 fumarate (and nitrate) reduction regulatory protein YP_661658.1 PFAM: Rhodanese-like; KEGG: cps:CPS_1238 hypothetical protein YP_661659.1 PFAM: phosphofructokinase; KEGG: sru:SRU_2111 phosphofructokinase subfamily YP_661660.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: ana:alr0058 D-lactate dehydrogenase YP_661661.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein response regulator receiver; KEGG: cvi:CV3504 probable two-component response regulator YP_661662.1 PFAM: regulatory protein, MerR; KEGG: pha:PSHAa1010 transcriptional regulator YP_661663.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC copper-translocating P-type ATPase heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase-like hydrolase Heavy metal transport/detoxification protein E1-E2 ATPase-associated region; KEGG: pha:PSHAa1011 P-type ATPase, copper transporting, phophatase-like domain YP_661664.1 KEGG: pha:PSHAa1012 hypothetical protein YP_661666.1 PFAM: UspA; KEGG: hch:HCH_04760 universal stress protein UspA and related nucleotide-binding protein YP_661667.1 PFAM: response regulator receiver; KEGG: nar:Saro_1578 two component transcriptional regulator, LuxR family YP_661668.1 PFAM: regulatory protein, LuxR response regulator receiver; KEGG: hch:HCH_05220 response regulator YP_661669.1 KEGG: mlo:mll6607 two-component, nitrogen fixation sensor protein FixL; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS YP_661670.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ava:Ava_1002 cation efflux protein YP_661671.1 KEGG: pha:PSHAa2877 hypothetical protein YP_661672.1 PFAM: heat shock protein DnaJ-like chaperone DnaJ-like; KEGG: ppu:PP4848 curved-DNA-binding protein, DnaJ family YP_661673.1 KEGG: cps:CPS_2621 cytochrome c family protein YP_661674.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pfl:PFL_2643 acetyltransferase, GNAT family YP_661675.1 KEGG: son:SO2355 universal stress protein family YP_661676.1 KEGG: pha:PSHAa1624 sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4 PAS fold; SMART: PAS YP_661677.1 PFAM: regulatory protein, ArsR; KEGG: mag:amb2905 predicted transcriptional regulator YP_661678.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: vpa:VPA0945 hypothetical protein YP_661679.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: ppr:PBPRA1422 conserved hypothetical protein YP_661680.1 KEGG: aci:ACIAD2972 hypothetical protein YP_661681.1 PFAM: Redoxin; KEGG: tbd:Tbd_2789 probable thiol:disulfide interchange protein YP_661682.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_661683.1 PFAM: phage integrase; KEGG: son:SO2370 site-specific recombinase, phage integrase family YP_661684.1 PFAM: Pyrrolo-quinoline quinone; KEGG: xcb:XC_2659 glucose dehydrogenase YP_661685.1 PFAM: glycoside hydrolase, family 13-like alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: rba:RB548 1,4-alpha-glucan branching enzyme YP_661686.1 KEGG: hch:HCH_03360 hypothetical protein YP_661687.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: pha:PSHAa1800 putative metallo-dependent hydrolase YP_661688.1 KEGG: mca:MCA1995 DNA polymerase III, delta prime subunit YP_661689.1 PFAM: thymidylate kinase; KEGG: vch:VC2016 dTMP kinase YP_661690.1 PFAM: aminodeoxychorismate lyase; KEGG: vch:VC2017 hypothetical protein YP_661691.1 PFAM: aminotransferase, class IV; KEGG: yps:YPTB2468 4-amino-4-deoxychorismate lyase YP_661692.1 PFAM: beta-ketoacyl synthase; KEGG: ecj:JW1081 3-oxoacyl-[acyl-carrier-protein] synthase II YP_661693.1 carries the fatty acid chain in fatty acid biosynthesis YP_661694.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR Male sterility-like; KEGG: vpa:VP2054 3-oxoacyl-(acyl-carrier-protein) reductase YP_661695.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase region; KEGG: msu:MS1873 (acyl-carrier-protein) S-malonyltransferase YP_661696.1 KEGG: vvy:VV1273 3-oxoacyl-(acyl-carrier-protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_661697.1 TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: cps:CPS_2295 fatty acid/phospholipid synthesis protein PlsX YP_661698.1 TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: vpa:VP2058 ribosomal protein L32 YP_661699.1 PFAM: protein of unknown function DUF177; KEGG: sdy:SDY_2062 hypothetical protein YP_661700.1 TIGRFAM: maf protein; PFAM: Maf-like protein; KEGG: eca:ECA1791 Maf-like protein YP_661701.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase; KEGG: syf:Synpcc7942_2099 dTDP-4-dehydrorhamnose reductase YP_661702.1 KEGG: vvy:VV0303 dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related YP_661703.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: par:Psyc_1214 glucose-1-phosphate thymidylyltransferase YP_661704.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: vpa:VP0222 dTDP-D-glucose 4,6-dehydratase YP_661705.1 KEGG: hdu:HD0645 ribosomal large subunit pseudouridine synthase C; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 pseudouridine synthase YP_661706.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1; KEGG: pha:PSHAa1816 RNase E: endoribonuclease for rRNA processing and mRNA degradation; member of the degradosome; involved in the production of deoxyribonucleotides via the formation of NDPs YP_661707.1 PFAM: helicase-like DEAD/DEAH box helicase-like; KEGG: ppr:PBPRB1232 putative ATP-dependent RNA helicase RhlE YP_661708.1 KEGG: pha:PSHAa2329 hypothetical protein ; signal peptide YP_661709.1 KEGG: pha:PSHAa2328 hypothetical protein YP_661710.1 PFAM: Uncharacterised conserved protein UCP025560; KEGG: pha:PSHAa2327 hypothetical protein YP_661711.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pfo:Pfl_3419 short-chain dehydrogenase/reductase SDR YP_661712.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: hch:HCH_06815 short-chain alcohol dehydrogenase-like protein YP_661713.1 PFAM: acyl-CoA dehydrogenase-like; KEGG: psp:PSPPH_0495 acyl-CoA dehydrogenase family protein YP_661714.1 PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: hch:HCH_00884 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain YP_661715.1 PFAM: glycoside hydrolase, family 13-like; KEGG: dde:Dde_2682 isoamylase protein-like YP_661716.1 PFAM: Glycoside hydrolase, family 42-like Beta-galactosidase trimerisation; KEGG: tma:TM1195 beta-galactosidase YP_661717.1 PFAM: electron transfer flavoprotein beta-subunit electron transfer flavoprotein, alpha subunit; KEGG: cps:CPS_3688 electron transfer flavoprotein, alpha subunit YP_661718.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: cps:CPS_3687 electron transfer flavoprotein, beta subunit YP_661719.1 PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: cps:CPS_3686 electron transfer flavoprotein-ubiquinone oxidoreductase YP_661720.1 PFAM: histone-like nucleoid-structuring protein H-NS; KEGG: son:SO3146 DNA-binding protein, H-NS family YP_661721.1 PFAM: alpha/beta hydrolase fold; KEGG: pha:PSHAa1636 hydrolase YP_661722.1 KEGG: son:SO2332 hypothetical protein YP_661723.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_661724.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer YP_661725.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS1804 molybdenum transport system permease YP_661726.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: rpa:RPA4717 molybdate transport system substrate-binding protein YP_661727.1 PFAM: molybdopterin biosynthesis MoaE; KEGG: son:SO4449 molybdenum cofactor biosynthesis protein E YP_661728.1 PFAM: thiamineS; KEGG: ssn:SSO_0763 molybdopterin biosynthesis YP_661729.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: cps:CPS_4636 molybdenum cofactor biosynthesis protein C YP_661730.1 TIGRFAM: molybdenum cofactor synthesis domain molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: vvy:VV1199 molybdenum cofactor biosynthesis protein B YP_661731.1 KEGG: cps:CPS_4634 putative molybdopterin biosynthesis gene YP_661732.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_661733.1 KEGG: cps:CPS_0521 hypothetical protein YP_661734.1 catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate YP_661735.1 KEGG: hch:HCH_00270 glycosyltransferase involved in cell wall biogenesis YP_661736.1 PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: cps:CPS_0506 putative sucrose phosphorylase YP_661738.1 PFAM: Calcium-binding EF-hand; KEGG: pha:PSHAa0019 calmodulin YP_661739.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: cps:CPS_3289 oxidoreductase, zinc-binding YP_661740.1 SMART: PUA; KEGG: son:SO1149 hypothetical SAM-dependent methyltransferase YP_661741.1 PFAM: type IV pilus assembly PilZ; KEGG: cps:CPS_2244 hypothetical protein YP_661742.1 KEGG: pha:PSHAa1144 helicase, ATP-dependent; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-like helicase-associated region protein of unknown function DUF1605; SMART: ATPase DEAD/DEAH box helicase-like YP_661743.1 PFAM: CBS domain containing protein; KEGG: cps:CPS_2242 CBS domain protein YP_661744.1 PFAM: Exonuclease, RNase T and DNA polymerase III Exonuclease-like; KEGG: pha:PSHAa1255 exodeoxyribonuclease I YP_661745.1 PFAM: protein of unknown function DUF342; KEGG: cps:CPS_3684 hypothetical protein YP_661746.1 KEGG: sdn:Sden_3510 hypothetical protein YP_661747.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase NADP oxidoreductase, coenzyme F420-dependent 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: ret:RHE_CH02433 probable 3-hydroxyisobutyrate dehydrogenase protein YP_661748.1 PFAM: glutathione peroxidase; KEGG: gka:GK1785 glutathione peroxidase YP_661749.1 PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: son:SO0558 smtA protein YP_661750.1 PFAM: protein of unknown function DUF34; KEGG: vvy:VV1026 hypothetical protein YP_661751.1 PFAM: DNA photolyase, FAD-binding DNA photolyase-like; KEGG: pha:PSHAb0453 putative deoxyribodipyrimidine photolyase YP_661752.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAb0299 putative TonB-dependent outer membrane receptor YP_661753.1 SohB; periplasmic protein; member of the peptidase S49 family YP_661754.1 KEGG: pha:PSHAa1344 hypothetical protein YP_661755.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ilo:IL1040 short chain dehydrogenase YP_661756.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_661757.1 PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: son:SO2244 transcriptional regulator, LacI family YP_661758.1 PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: xcb:XC_1648 cyclomaltodextrin glucanotransferase (CGTase) YP_661759.1 PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa1356 sugar transporter YP_661760.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: cvi:CV0239 hypothetical protein YP_661761.1 TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily; KEGG: rso:RSc1773 putative thioesterase protein YP_661762.1 PFAM: Rhomboid-like protein; KEGG: xoo:XOO4627 hypothetical protein YP_661763.1 TIGRFAM: conserved hypothetical protein; PFAM: arsenate reductase and related; KEGG: ppr:PBPRA0845 hypothetical arsenate reductase YP_661764.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_661765.1 PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: ilo:IL1456 D-alanyl-D-alanine carboxypeptidase YP_661766.1 PFAM: protein of unknown function DUF74; KEGG: eca:ECA2666 hypothetical protein YP_661767.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism YP_661768.1 PFAM: conserved hypothetical protein EAL; KEGG: pca:Pcar_2565 sensory box/GGDEF family protein YP_661769.1 KEGG: vfi:VFA0810 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35 YP_661770.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate YP_661771.1 KEGG: ilo:IL1472 negative regulator of replication initiation YP_661772.1 KEGG: yps:YPTB3015 hypothetical protein YP_661773.1 PFAM: protein of unknown function DUF423; KEGG: ppr:PBPRA2988 conserved hypothetical protein YP_661774.1 KEGG: pha:PSHAa1065 hypothetical protein YP_661775.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence YP_661777.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_661778.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_661779.1 PFAM: PhoH-like protein; KEGG: vpa:VP0732 PhoH family protein YP_661780.1 PFAM: protein of unknown function UPF0054; KEGG: sbo:SBO_0523 hypothetical protein YP_661781.1 PFAM: CBS domain containing protein transporter-associated region; KEGG: ilo:IL0944 Mg/Co transporter YP_661782.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: vfi:VF0755 apolipoprotein N-acyltransferase YP_661783.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pha:PSHAa0058 hypothetical protein YP_661784.1 PFAM: ThiJ/PfpI; KEGG: eli:ELI_02220 protease YP_661785.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB region; KEGG: hit:NTHI1658 transcription elongation factor GreA YP_661786.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_661787.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I Carbamoyl-phosphate synthase, small chain; KEGG: vch:VC2390 carbamoyl-phosphate synthase, small subunit YP_661788.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_661789.1 PFAM: regulatory proteins, AsnC/Lrp; KEGG: pha:PSHAa2263 leucine-responsive regulatory protein YP_661790.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the protein from Pseudomonas does not have this domain YP_661791.1 PFAM: cytochrome B561; KEGG: cps:CPS_2796 cytochrome b561 family protein YP_661792.1 PFAM: protein of unknown function DUF541; KEGG: ilo:IL1740 hypothetical protein YP_661793.1 PFAM: Rhodanese-like; KEGG: vch:VCA0620 thiosulfate sulfurtransferase SseA, putative YP_661794.1 PFAM: adenosine/AMP deaminase; KEGG: lpf:lpl0535 hypothetical protein YP_661795.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pfo:Pfl_2573 xanthine/uracil permease YP_661796.1 catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway. YP_661797.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC2660 TonB-dependent receptor YP_661798.1 PFAM: protein of unknown function DUF985 purine nucleoside permease; KEGG: gox:GOX1437 purine nucleoside permease YP_661800.1 PFAM: OmpA-like transmembrane region; KEGG: vpa:VP0636 putative outer membrane protein A YP_661801.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: biotin/lipoyl attachment secretion protein HlyD; KEGG: son:SO1925 HlyD family secretion protein YP_661802.1 PFAM: acriflavin resistance protein; KEGG: son:SO1924 AcrB/AcrD/AcrF family protein YP_661803.1 PFAM: acriflavin resistance protein; KEGG: son:SO1923 AcrB/AcrD/AcrF family protein YP_661804.1 PFAM: aldo/keto reductase; KEGG: atu:Atu1524 hypothetical protein YP_661805.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: vfi:VF0653 23S rRNA methyltransferase YP_661806.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: cps:CPS_0746 efflux transporter, MFP subunit, AcrA/E family YP_661807.1 PFAM: acriflavin resistance protein; KEGG: cps:CPS_0745 AcrB/AcrD/AcrF family protein YP_661808.1 PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region molybdopterin oxidoreductase Fe4S4 region; KEGG: hch:HCH_06645 anaerobic dehydrogenase, typically selenocysteine-containing YP_661809.1 PFAM: protein of unknown function DUF1272; KEGG: bja:blr0341 hypothetical protein YP_661810.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: xcv:XCV3755 membrane fusion protein YP_661811.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: xcb:XC_3665 ABC transporter ATP-binding protein YP_661812.1 PFAM: protein of unknown function DUF214; KEGG: xac:XAC3640 ABC transporter ATP-binding protein YP_661813.1 PFAM: protein of unknown function DUF214; KEGG: xcb:XC_3667 ABC transporter permease YP_661814.1 KEGG: son:SO4005 hypothetical protein YP_661815.1 KEGG: son:SO4006 hypothetical protein YP_661816.1 KEGG: son:SO4007 hypothetical protein YP_661817.1 KEGG: son:SO4008 hypothetical protein YP_661818.1 PFAM: conserved hypothetical protein EAL; KEGG: ilo:IL1784 disrupted signaling protein (xGGDEF and EAL domains) YP_661819.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer PAS fold-3 PAS fold; KEGG: pha:PSHAa0395 aerotaxis sensory transducer YP_661820.1 PFAM: response regulator receiver metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region; KEGG: pha:PSHAa1150 response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase) YP_661821.1 KEGG: pha:PSHAa1151 two-component member protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like MHYT PAS fold-3 PAS fold; SMART: PAS PAC motif YP_661823.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: hch:HCH_04130 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_661824.1 PFAM: histidine kinase, HAMP region histidine kinase A-like; KEGG: hch:HCH_04334 signal transduction histidine kinase YP_661825.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL GAF; KEGG: dar:Daro_3445 PAS:GGDEF YP_661826.1 PFAM: regulatory protein, MarR; KEGG: pha:PSHAb0538 putative transcription regulator YP_661827.1 PFAM: aldo/keto reductase; KEGG: eca:ECA0736 putative aldo/keto reductase YP_661828.1 PFAM: helix-turn-helix, AraC type AraC-type transcriptional regulator-like; KEGG: hch:HCH_03982 AraC-type DNA-binding domain-containing protein YP_661829.1 PFAM: MscS Mechanosensitive ion channel; KEGG: noc:Noc_2151 MscS mechanosensitive ion channel YP_661830.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_1927 TonB dependent receptor YP_661831.1 PFAM: Siderophore-interacting protein FAD-binding 9, siderophore-interacting; KEGG: pha:PSHAb0539 putative protein involved in iron transport YP_661832.1 KEGG: LOC433220; similar to proline-rich antigen YP_661834.1 PFAM: helix-turn-helix motif YP_661835.1 PFAM: TrkA-N sodium/hydrogen exchanger; KEGG: cps:CPS_1761 putative glutathione-regulated potassium-efflux system protein KefB YP_661836.1 KEGG: gvi:gll2743 hypothetical protein YP_661837.1 KEGG: cps:CPS_1415 hypothetical protein YP_661838.1 TIGRFAM: gluconate transporter; PFAM: Gluconate transporter Citrate transporter; KEGG: vvy:VV0061 putative gluconate permease YP_661839.1 PFAM: Endoribonuclease L-PSP; KEGG: vfi:VFA0002 translation initiation inhibitor YP_661840.1 PFAM: UvrD/REP helicase; KEGG: cps:CPS_2454 helicase IV YP_661842.1 KEGG: mma:MM3260 hypothetical protein YP_661843.1 PFAM: protein of unknown function UPF0126; KEGG: pha:PSHAb0445 hypothetical protein YP_661844.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: bur:Bcep18194_C7101 2OG-Fe(II) oxygenase YP_661845.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: nwi:Nwi_0702 FMN-dependent alpha-hydroxy acid dehydrogenase YP_661846.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: rpa:RPA3480 putative outer membrane receptor for iron transport YP_661847.1 TIGRFAM: TonB family protein; KEGG: pst:PSPTO0067 tonB protein YP_661848.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sbo:SBO_2999 ExbD YP_661849.1 KEGG: jan:Jann_2129 biopolymer transport protein ExbD/TolR YP_661850.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: jan:Jann_2130 MotA/TolQ/ExbB proton channel YP_661851.1 KEGG: cps:CPS_2514 hypothetical protein YP_661852.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding protein of unknown function DUF224, cysteine-rich region FAD linked oxidase-like; KEGG: vvy:VVA1265 Fe-S oxidoreductase YP_661853.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_661854.1 PFAM: protein of unknown function DUF1428; KEGG: lpp:lpp2085 hypothetical protein YP_661855.1 PFAM: TrkA-N sodium/hydrogen exchanger; KEGG: hch:HCH_06854 Kef-type K+ transport system, predicted NAD-binding component YP_661856.1 PFAM: UspA; KEGG: noc:Noc_2951 universal stress protein, UspA YP_661857.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase-like Haloacid dehalogenase-like hydrolase E1-E2 ATPase-associated region; KEGG: hch:HCH_06855 cation transport ATPase YP_661858.1 PFAM: oxidoreductase FAD/NAD(P)-binding Oxidoreductase FAD-binding region; KEGG: ilo:IL2501 ferredoxin-NADP reductase YP_661859.1 PFAM: phosphorylase kinase alphabeta; KEGG: syf:Synpcc7942_1650 phosphorylase kinase alpha subunit YP_661860.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cps:CPS_4719 transporter, LysE family YP_661861.1 PFAM: regulatory protein, LuxR response regulator receiver Sigma-70, region 4 type 2; KEGG: cps:CPS_1406 DNA-binding response regulator YP_661862.1 PFAM: ATP-binding region, ATPase-like histidine kinase, dimerisation and phosphoacceptor region Cache, type 2; KEGG: cps:CPS_1405 sensor histidine kinase YP_661863.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: cps:CPS_0129 extracellular solute-binding protein, family 7 YP_661864.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: cps:CPS_0130 C4-dicarboxylate transporter family protein, DctQ subunit YP_661865.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: cps:CPS_0131 C4-dicarboxylate transporter family protein, DctM subunit YP_661868.1 PFAM: superoxide dismutase, copper/zinc binding; KEGG: vpa:VPA1514 superoxide dismutase, Cu-Zn YP_661871.1 PFAM: protein of unknown function, Spy-related; KEGG: cps:CPS_1751 hypothetical protein YP_661872.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: ngo:NGO0177 putative two-component system transcriptional response regulator YP_661873.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: ppu:PP4505 sensor histidine kinase YP_661874.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bbr:BB1107 ferredoxin reductase YP_661875.1 PFAM: ferredoxin; KEGG: bbr:BB3144 putative ferredoxin YP_661876.1 PFAM: cytochrome P450; KEGG: mlo:mlr5876 cytochrome P450 YP_661877.1 PFAM: helix-turn-helix, AraC type; KEGG: vvu:VV21452 AraC-type DNA-binding domain-containing protein YP_661878.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: gka:GK2774 alcohol dehydrogenase YP_661879.1 PFAM: putative esterase; KEGG: bur:Bcep18194_B0523 putative esterase YP_661880.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: pha:PSHAa1310 signal peptidase I protein YP_661881.1 KEGG: ppr:PBPRB0205 hypothetical FOG: GGDEF domain; TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region YP_661882.1 PFAM: Alcohol dehydrogenase GroES-like; KEGG: reu:Reut_A1899 possible NADH oxidoreductase YP_661883.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: vpa:VPA1589 transcriptional regulator, LysR family YP_661884.1 PFAM: transcriptional regulatory protein-like; KEGG: cps:CPS_3214 putative transcriptional regulator YP_661885.1 KEGG: hsa:1834 dentin sialophosphoprotein YP_661886.1 KEGG: cps:CPS_3211 hypothetical protein YP_661887.1 PFAM: peptidase C39, bacteriocin processing; KEGG: cps:CPS_3210 peptidase, C39 family YP_661888.1 KEGG: cps:CPS_3209 hypothetical protein YP_661889.1 KEGG: cps:CPS_3207 hypothetical protein YP_661890.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_2088 TonB-dependent receptor YP_661891.1 PFAM: putative cyclase; KEGG: mbo:Mb1744 hypothetical protein YP_661892.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: bbr:BB1500 putative 3-hydroxybutyryl-CoA dehydrogenase YP_661893.1 PFAM: protein of unknown function DUF849; KEGG: eli:ELI_10685 hypothetical protein YP_661894.1 PFAM: Cupin 2, conserved barrel; KEGG: afu:AF1208 hypothetical protein YP_661895.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mbo:Mb1741 probable oxidoreductase YP_661896.1 PFAM: Na+/solute symporter; KEGG: afu:AF1205 pantothenate permease (PanF-2) YP_661897.1 PFAM: regulatory proteins, IclR; KEGG: mbo:Mb1748 probable transcriptional regulatory protein YP_661898.1 PFAM: DoxX; KEGG: cps:CPS_3329 hypothetical protein YP_661899.1 PFAM: pseudouridine synthase; KEGG: vfi:VFA0485 ribosomal large subunit pseudouridine synthase A YP_661900.1 PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa0442 transport protein (MFS) YP_661901.1 PFAM: helicase-like DEAD/DEAH box helicase-like; KEGG: son:SO1383 ATP-dependent RNA helicase, DEAD box family YP_661902.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: reu:Reut_A1003 regulatory protein, LysR:LysR, substrate-binding YP_661903.1 PFAM: class II aldolase/adducin-like; KEGG: rso:RSc1767 hypothetical protein YP_661904.1 KEGG: pha:PSHAa1891 hypothetical protein YP_661905.1 KEGG: ret:RHE_CH03726 hypothetical protein YP_661906.1 PFAM: metal-dependent phosphohydrolase, HD subdomain; KEGG: pha:PSHAa1148 two-component regulator with metal-dependent phosphohydrolase, HD region YP_661907.1 KEGG: pha:PSHAa1600 cold-shock DNA-binding domain YP_661908.1 SMART: extracellular solute-binding protein, family 3; KEGG: cps:CPS_2474 bacterial extracellular solute-binding protein, family 3 YP_661909.1 PFAM: glycoside hydrolase, family 31; KEGG: cps:CPS_0983 glycosyl hydrolase, family 31 YP_661910.1 PFAM: putative esterase; KEGG: pfu:PF1108 putative alpha-dextrin endo-1,6-alpha-glucosidase YP_661911.1 PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: ppr:PBPRB0415 putative glycosidase YP_661912.1 PFAM: Ig-like, group 2; KEGG: rba:RB3421 probable beta-agarase [precursor] YP_661914.1 PFAM: GAF; KEGG: pfl:PFL_3308 diguanylate cyclase, putative YP_661915.1 PFAM: UMUC-like DNA-repair protein; KEGG: cps:CPS_2682 UmuC protein YP_661916.1 PFAM: peptidase S24, S26A and S26B; KEGG: son:SOA0013 umuD protein YP_661917.1 KEGG: ilo:IL1817 hypothetical protein YP_661918.1 KEGG: pha:PSHAa1996 conserved protein of unknown function; enzyme; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease YP_661919.1 KEGG: noc:Noc_2695 hypothetical protein YP_661920.1 KEGG: hypothetical protein YP_661921.1 PFAM: HPP domain containing protein+B94; KEGG: tcx:Tcr_1929 HPP YP_661923.1 KEGG: pha:PSHAb0153 hypothetical protein YP_661924.1 KEGG: mag:amb4351 hypothetical protein YP_661925.1 KEGG: hch:HCH_01554 hypothetical protein YP_661926.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_661927.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation YP_661928.1 PFAM: Ig-like, group 1; KEGG: yps:YPTB3789 possible bacterial Ig-like domain (group 1) YP_661929.1 PFAM: sodium:dicarboxylate symporter; KEGG: cps:CPS_1194 putative proton/glutamate symporter YP_661930.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: cps:CPS_3477 lipoprotein releasing system transmembrane protein LolE YP_661931.1 KEGG: ecc:c1392 lipoprotein releasing system ATP-binding protein lolD; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase YP_661932.1 PFAM: CBS domain containing protein protein of unknown function DUF21; KEGG: sru:SRU_0924 domain of unknown function domain protein YP_661933.1 KEGG: cps:CPS_2256 hypothetical protein YP_661934.1 KEGG: ilo:IL1693 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease YP_661935.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_661936.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rba:RB3321 hypothetical protein YP_661937.1 TIGRFAM: signal peptide peptidase SppA, 67K type signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: pha:PSHAa1409 protease IV, a signal peptide peptidase YP_661938.1 PFAM: protein of unknown function DUF335, SprT; SMART: Protein of unknown function SprT; KEGG: vfi:VF0438 SprT protein YP_661939.1 PFAM: protein of unknown function DUF412; KEGG: vvy:VV2132 hypothetical protein YP_661940.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pha:PSHAa1720 thioredoxin reductase, FAD/NAD(P)-binding YP_661941.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_661942.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_661943.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_661944.1 KEGG: pha:PSHAa1724 ATP-dependent specificity subunit of ClpA-ClpP serine protease; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central region Clp, N terminal ATPase associated with various cellular activities, AAA_5 ATPase AAA-2; SMART: ATPase YP_661945.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_661946.1 KEGG: ecc:c1017 cold shock-like protein cspD; TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_661947.1 KEGG: eba:ebA832 isocitrate dehydrogenase isozyme 2, monomeric type, NADP-specific; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type YP_661948.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: pseudouridine synthase; KEGG: vch:VC1140 pseudouridine synthase family 1 protein YP_661949.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_661950.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis YP_661951.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_661952.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: ana:all0661 adenylate cyclase YP_661953.1 PFAM: Cupin 4 Transcription factor jumonji; SMART: Transcription factor jumonji/aspartyl beta-hydroxylase; KEGG: stm:STM1229 putative cytoplasmic protein YP_661954.1 KEGG: son:SO2711 hypothetical protein YP_661955.1 PFAM: response regulator receiver LytTr DNA-binding region; KEGG: ilo:IL1261 response regulator of the LytR/AlgR family YP_661956.1 PFAM: ATP-binding region, ATPase-like histidine kinase internal region; KEGG: cps:CPS_2277 sensor histidine kinase YP_661957.1 PFAM: protein of unknown function DUF962; KEGG: lic:LIC11677 hypothetical protein YP_661958.1 PFAM: type IV pilus assembly PilZ; KEGG: ilo:IL2319 predicted glycosyltransferase YP_661959.1 PFAM: peptidase M61; SMART: PDZ/DHR/GLGF; KEGG: noc:Noc_1493 peptidase M61 YP_661960.1 KEGG: spo:SPBC1683.02 putative adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase YP_661961.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: syn:slr1192 zinc-containing alcohol dehydrogenase family YP_661962.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: pha:PSHAa0305 cation efflux system protein YP_661963.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cps:CPS_4857 cation efflux system protein CusB YP_661964.1 KEGG: ilo:IL1224 outer membrane efflux protein YP_661966.1 PFAM: sodium/hydrogen exchanger; KEGG: ftu:FTT0669 sodium/hydrogen exchanger family protein YP_661967.1 TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; PFAM: zinc finger, DksA/TraR C4-type; KEGG: ilo:IL0756 DnaK suppressor protein YP_661968.1 KEGG: pfo:Pfl_3563 hypothetical protein YP_661969.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bur:Bcep18194_A3790 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_661970.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase FAD-dependent pyridine nucleotide-disulphide oxidoreductase HI0933-like protein; KEGG: cps:CPS_0925 2,4-dienoyl-CoA reductase YP_661972.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_4213 putative ferric aerobactin receptor YP_661973.1 PFAM: PepSY-associated TM helix; KEGG: pha:PSHAb0287 putative uncharacterized iron-regulated membrane protein YP_661974.1 KEGG: eli:ELI_05360 general stress protein YP_661975.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO3694 HlyD family secretion protein YP_661976.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: xcb:XC_3665 ABC transporter ATP-binding protein YP_661977.1 PFAM: protein of unknown function DUF214; KEGG: xcb:XC_3666 ABC transporter ATP-binding protein YP_661978.1 PFAM: protein of unknown function DUF214; KEGG: xcb:XC_3667 ABC transporter permease YP_661979.1 PFAM: protein of unknown function UPF0016; KEGG: pha:PSHAb0280 hypothetical protein YP_661980.1 PFAM: glutaredoxin; KEGG: pae:PA1741 hypothetical protein YP_661981.1 KEGG: cps:CPS_3134 hypothetical protein YP_661982.1 PFAM: protein of unknown function DUF541; KEGG: dps:DP0874 hypothetical protein YP_661983.1 KEGG: bcl:ABC1618 hypothetical protein YP_661984.1 KEGG: cps:CPS_3313 putative lipoprotein YP_661985.1 KEGG: tcx:Tcr_1155 nitrate transport ATP-binding subunits C and D; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: ATPase YP_661986.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_06707 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component YP_661987.1 KEGG: vpa:VPA1058 putative nitrate transport protein YP_661988.1 PFAM: protein kinase protein phosphatase 2C-like; SMART: Serine/threonine protein kinase; KEGG: cps:CPS_4949 serine/threonine protein kinase YP_661989.1 PFAM: major facilitator superfamily MFS_1; KEGG: ppr:PBPRA2521 hypothetical nitrate transporter YP_661990.1 KEGG: hch:HCH_01503 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase YP_661991.1 PFAM: Xanthine/uracil/vitamin C permease sulphate transporter; KEGG: mja:MJ0326 hypothetical protein YP_661992.1 PFAM: polysaccharide deacetylase; KEGG: pae:PA1517 hypothetical protein YP_661993.1 PFAM: regulatory protein, TetR Tetracycline transcriptional regulator YcdC-like-like; KEGG: hch:HCH_01108 transcriptional regulator YP_661994.1 PFAM: ferredoxin molybdopterin dehydrogenase, FAD-binding [2Fe-2S]-binding CO dehydrogenase flavoprotein-like; KEGG: ppr:PBPRA2243 putative xanthine dehydrogenase, XdhA subunit YP_661995.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: cps:CPS_4865 xanthine dehydrogenase, molybdopterin binding subunit YP_661996.1 PFAM: protein of unknown function DUF182; KEGG: cps:CPS_4866 putative xanthine dehydrogenase accessory protein XdhC YP_661997.1 KEGG: hch:HCH_01094 hypothetical protein YP_661998.1 PFAM: Transthyretin; KEGG: sme:SMb21285 conserved hypothetical protein, transthyretin-like protein YP_661999.1 Catalyzes the deamination of guanine YP_662000.1 PFAM: protein of unknown function DUF989; KEGG: hch:HCH_01090 predicted membrane protein YP_662001.1 PFAM: Negative transcriptional regulator; KEGG: bha:BH0412 transcriptional repressor of sporulation and degradative enzymes production YP_662002.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ppr:PBPRB0453 hypothetical protein YP_662003.1 KEGG: rpb:RPB_3706 hypothetical protein YP_662004.1 PFAM: protein of unknown function DUF323; KEGG: rsp:RSP_3075 hypothetical protein YP_662005.1 PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase NmrA-like; KEGG: rba:RB4982 conserved hypothetical protein-putative oxidoreductase YP_662006.1 KEGG: dps:DP0735 hypothetical protein YP_662007.1 KEGG: vfi:VFA0619 hypothetical protein YP_662008.1 PFAM: helicase-like DEAD/DEAH box helicase-like; KEGG: dps:DP1413 similar to ATP-dependent RNA helicase YP_662009.1 KEGG: ppr:PBPRB1217 putative TonB2 protein YP_662012.1 KEGG: bja:bll1583 hypothetical protein YP_662013.1 KEGG: pha:PSHAa2889 secreted protein YP_662015.1 PFAM: protein of unknown function UPF0061; KEGG: pmt:PMT1392 conserved hypotheical protein YP_662016.1 KEGG: vch:VCA0237 hypothetical protein YP_662018.1 KEGG: pfl:PFL_3561 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_662019.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_662020.1 PFAM: regulatory protein, LuxR response regulator receiver; KEGG: vfi:VF1627 response regulator YP_662021.1 PFAM: protein of unknown function UPF0005; KEGG: cps:CPS_2350 putative membrane protein YP_662022.1 PFAM: DsrE-like protein; KEGG: plu:plu0426 putative uncharacterized protein involved in oxidation of intracellular sulfur YP_662023.1 PFAM: DsrE-like protein; KEGG: ppr:PBPRA0311 putative uncharacterized protein involved in oxidation of intracellular sulfur YP_662024.1 KEGG: pfl:PFL_3871 DsrH family protein YP_662025.1 PFAM: DsrC-like protein; KEGG: ppr:PBPRA2191 putative sulfite reductase YP_662026.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_662027.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: cps:CPS_2756 CrcB protein YP_662028.1 PFAM: AAA ATPase, central region; SMART: ATPase; KEGG: vfi:VF0907 ATPase, AAA family YP_662029.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: ilo:IL0666 outer membrane lipoprotein-sorting protein YP_662030.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: cps:CPS_2759 cell division protein FtsK YP_662031.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system YP_662032.1 TIGRFAM: alanine dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase alanine dehydrogenase/PNT-like; KEGG: ilo:IL0669 alanine dehydrogenase YP_662033.1 KEGG: vvu:VV12977 orotidine-5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_662034.1 SMART: Tetratricopeptide region; KEGG: vfi:VF1756 tetratricopeptide repeat family protein YP_662035.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_662036.2 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_662037.1 KEGG: cps:CPS_2334 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region YP_662038.1 TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: ppr:PBPRA2452 putative 3-phosphoshikimate 1-carboxyvinyltransferase YP_662039.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_662040.1 TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A DNA gyrase C-terminal repeat, beta-propeller; KEGG: cps:CPS_2331 DNA gyrase, A subunit YP_662041.1 KEGG: eca:ECA1200 3-demethylubiquinone-9 3-methyltransferase; TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: Methyltransferase type 11 Methyltransferase type 12 YP_662042.1 KEGG: ilo:IL1362 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase HAD-superfamily hydrolase, subfamily IA, variant 3 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_662043.1 Catalyzes the rate-limiting step in dNTP synthesis YP_662044.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA YP_662045.1 PFAM: ferredoxin; KEGG: sgl:SG1586 hypothetical protein YP_662046.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_662047.1 PFAM: NlpBDapX lipoprotein; KEGG: son:SO1880 lipoprotein-34 NlpB YP_662048.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: msu:MS0265 dihydrodipicolinate synthase/N-acetylneuraminate lyase YP_662049.1 KEGG: cps:CPS_3185 glycine cleavage system transcriptional repressor YP_662050.1 bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine YP_662051.1 PFAM: protein of unknown function UPF0118; KEGG: vfi:VF1921 transporter YP_662052.1 PFAM: peptidase M48, Ste24p; KEGG: cps:CPS_3190 hypothetical protein YP_662053.1 PFAM: Redoxin; KEGG: ilo:IL1464 thioredoxin related protein YP_662054.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: hch:HCH_01858 arsenate reductase YP_662055.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: rso:RSc1558 probable TRP repressor binding protein YP_662056.1 KEGG: vfi:VF1924 hypothetical protein YP_662057.1 PFAM: Chromosomal replication initiator, DnaA; KEGG: pmu:PM0017 hypothetical HI1225 YP_662058.1 KEGG: pha:PSHAa1906 hypothetical protein YP_662059.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_662060.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase-like; KEGG: cps:CPS_3197 phosphoribosylglycinamide formyltransferase YP_662061.1 KEGG: pha:PSHAa1949 hypothetical protein YP_662062.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA YP_662063.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_662064.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_662065.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_662066.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_662067.1 PFAM: ribosomal protein L35; KEGG: tcx:Tcr_1665 ribosomal protein L35 YP_662068.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: ilo:IL1398 translation initiation factor 3 YP_662069.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_662070.1 KEGG: vvy:VVA0553 hypothetical protein YP_662071.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mca:MCA2986 pteridine reductase YP_662072.1 KEGG: ppr:PBPRA1486 conserved hypothetical protein YP_662073.1 3'-5' exonuclease of DNA polymerase III YP_662074.1 PFAM: cyclic nucleotide-binding CBS domain containing protein protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: ilo:IL1419 signal-transduction protein YP_662075.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: ilo:IL1418 choline-glycine betaine transporter YP_662076.1 KEGG: pha:PSHAa2968 hypothetical protein YP_662077.1 KEGG: pha:PSHAb0546 hypothetical protein YP_662078.1 KEGG: son:SO2239 hypothetical protein YP_662079.1 PFAM: sugar-specific permease, EIIA 1 domain; KEGG: msu:MS1508 phosphotransferase system IIA components YP_662080.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: cps:CPS_0277 isoquinoline 1-oxidoreductase, beta subunit YP_662081.1 PFAM: ferredoxin [2Fe-2S]-binding; KEGG: ccr:CC0022 isoquinoline 1-oxidoreductase, alpha subunit YP_662082.1 KEGG: cps:CPS_0279 conserved hypothetical protein YP_662083.1 PFAM: protein of unknown function DUF182; KEGG: cps:CPS_0280 putative xanthine dehydrogenase accessory factor YP_662084.1 PFAM: RDD domain containing protein; KEGG: son:SO2902 hypothetical protein YP_662085.1 KEGG: cps:CPS_3297 hypothetical protein YP_662086.1 PFAM: AAA ATPase, central region ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: cps:CPS_3298 hypothetical protein YP_662087.1 TIGRFAM: cysteine synthases cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: son:SO2903 cysteine synthase A YP_662088.1 KEGG: cps:CPS_2250 putative lipoprotein YP_662089.1 PFAM: protein of unknown function DUF1006; KEGG: son:SO4332 hypothetical protein YP_662090.1 KEGG: hch:HCH_03108 hypothetical protein YP_662091.1 PFAM: CBS domain containing protein; KEGG: cps:CPS_4877 putative acetoin utilization protein AcuB YP_662092.1 KEGG: cps:CPS_2148 membrane protein, Rhomboid family YP_662093.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: ava:Ava_B0058 glutathione-dependent formaldehyde-activating, GFA YP_662094.1 Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein YP_662095.1 PFAM: peptidase S9, prolyl oligopeptidase active site region peptidase S9B, dipeptidylpeptidase IV-like; KEGG: pha:PSHAa1568 enzymatic protein YP_662096.1 PFAM: glutathione peroxidase; KEGG: reu:Reut_A0042 glutathione peroxidase YP_662097.1 PFAM: NAD(P)H dehydrogenase (quinone) NADPH-dependent FMN reductase; KEGG: bur:Bcep18194_A3615 (acyl-carrier protein) phosphodiesterase YP_662098.1 KEGG: mca:MCA0589 nitrate transporter, putative YP_662099.1 PFAM: response regulator receiver ANTAR; KEGG: mlo:mlr2855 two-component response regulator YP_662100.1 PFAM: glycosyl transferase, family 3; KEGG: pfo:Pfl_3579 glycosyl transferase, family 3 YP_662101.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pae:PA2611 uroporphyrin-III C-methyltransferase / precorrin-2 oxidase / ferrochelatase YP_662102.1 PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region molybdopterin oxidoreductase Fe4S4 region BFD-like [2Fe-2S]-binding region; KEGG: cps:CPS_4945 nitrate reductase YP_662103.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; KEGG: cps:CPS_4946 nitrite reductase [NAD(P)H], small subunit YP_662104.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like nitrite and sulphite reductase 4Fe-4S region BFD-like [2Fe-2S]-binding region; KEGG: cps:CPS_4947 nitrite reductase [NAD(P)H], large subunit YP_662105.1 PFAM: GumN; KEGG: cps:CPS_4737 hypothetical protein YP_662106.1 PFAM: UBA/THIF-type NAD/FAD binding fold MoeZ/MoeB; KEGG: vfi:VF1609 molybdopterin biosynthesis MoeB protein YP_662107.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain MoeA-like, domain I and II MoeA-like, domain IV; KEGG: vpa:VPA1170 molybdopterin biosynthesis MoeA protein YP_662108.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cps:CPS_2915 multidrug resistance protein NorM YP_662109.1 PFAM: beta-lactamase; KEGG: vfi:VF0968 beta-lactamase family protein YP_662110.1 SMART: extracellular solute-binding protein, family 3; KEGG: dvu:DVU0852 extracellular solute-binding protein, putative YP_662111.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: pha:PSHAb0023 hypothetical protein YP_662112.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: vpa:VP1862 putative threonine efflux protein YP_662113.1 KEGG: pae:PA3502 hypothetical protein YP_662114.1 PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: dar:Daro_4086 response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal YP_662115.1 PFAM: SapC; KEGG: cps:CPS_0240 hypothetical protein YP_662116.1 PFAM: tryptophan halogenase; KEGG: cps:CPS_0239 putative tryptophan halogenase YP_662117.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3737 TonB-dependent receptor YP_662119.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: bld:BLi01972 hypothetical protein YP_662120.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: sco:SCO3480 putative racemase YP_662121.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: nfa:nfa30750 putative dehydrogenase YP_662122.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bld:BLi03830 2-keto-3-deoxygluconate oxidoreductase; RBL02950 YP_662123.1 PFAM: aldehyde dehydrogenase; KEGG: gox:GOX1712 aldehyde dehydrogenase YP_662124.1 TIGRFAM: dethiobiotin synthase; KEGG: pfl:PFL_5689 dethiobiotin synthetase YP_662125.1 PFAM: UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: psb:Psyr_4684 biotin synthesis protein BioC YP_662126.1 PFAM: aminotransferase, class I and II aminotransferase class-III; KEGG: pfo:Pfl_5175 8-amino-7-oxononanoate synthase YP_662127.1 KEGG: vpa:VP1113 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB YP_662128.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: stt:t2094 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_662129.1 KEGG: ppr:PBPRA2842 hypothetical protein YP_662130.1 PFAM: Invasion gene expression up-regulator, SirB; KEGG: son:SO3830 hypothetical protein YP_662131.1 PFAM: response regulator receiver metal-dependent phosphohydrolase, HD subdomain; KEGG: dde:Dde_3114 metal dependent phosphohydrolase YP_662132.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: cps:CPS_3551 modification methylase, HemK family YP_662133.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_662134.1 PFAM: glutamyl-tRNA reductase Shikimate/quinate 5-dehydrogenase; KEGG: son:SO3834 glutamyl-tRNA reductase YP_662135.1 PFAM: outer membrane lipoprotein LolB; KEGG: son:SO3835 outer membrane lipoprotein LolB YP_662136.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_662137.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_662138.1 PFAM: MscS Mechanosensitive ion channel; KEGG: gsu:GSU2357 hypothetical protein YP_662139.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_662140.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_662141.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_662142.1 PFAM: extracellular solute-binding protein, family 1; KEGG: hch:HCH_00071 ABC-type sugar transport system, periplasmic component YP_662143.1 KEGG: xcv:XCV0135 hypothetical protein YP_662144.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: pha:PSHAb0545 putative amino acid permease YP_662145.1 PFAM: NAD(P)H dehydrogenase (quinone) NADPH-dependent FMN reductase; KEGG: pcu:pc0973 hypothetical protein YP_662146.1 PFAM: protein of unknown function DUF885; KEGG: cps:CPS_3202 putative lipoprotein YP_662147.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: vfi:VF0760 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_662148.1 PFAM: TPR repeat response regulator receiver Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ilo:IL0829 response regulator with TPR repeat YP_662150.1 KEGG: hch:HCH_00494 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein histidine kinase, HAMP region PAS fold-4; SMART: PAS YP_662151.1 KEGG: eba:ebB54 hypothetical protein YP_662152.1 KEGG: vch:VC2456 hypothetical protein YP_662153.1 KEGG: hma:rrnAC3030 hypothetical protein YP_662154.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_4420 TonB-dependent receptor YP_662155.1 KEGG: pha:PSHAb0417 putative quaternary ammonium permease YP_662156.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine YP_662157.1 catalyzes the formation of betaine from betaine aldehyde YP_662158.1 HTH-type; bet1; Repressor involved in choline regulation of the bet genes YP_662159.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: son:SO2915 acetate kinase YP_662160.1 KEGG: eca:ECA3040 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase DRTGG YP_662161.1 PFAM: phosphofructokinase; KEGG: sru:SRU_0825 6-phosphofructokinase YP_662162.1 KEGG: ath:At1g22170 phosphoglycerate/bisphosphoglycerate mutase family protein; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase YP_662163.1 TIGRFAM: phosphoenolpyruvate synthase; PFAM: PEP-utilizing enzyme pyruvate phosphate dikinase, PEP/pyruvate-binding PEP-utilising enzyme, mobile region; KEGG: mac:MA2667 pyruvate water dikinase YP_662164.1 PFAM: Cl- channel, voltage gated; KEGG: pca:Pcar_1620 putative chloride channel YP_662165.1 KEGG: bte:BTH_I1196 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_662166.1 KEGG: pha:PSHAa1766 hypothetical protein YP_662167.1 PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase YP_662168.1 PFAM: SNF2-related helicase-like; SMART: DEAD/DEAH box helicase-like; KEGG: dps:DP0995 helicase YP_662169.1 KEGG: pha:PSHAa2454 hypothetical protein; membrane protein YP_662170.1 PFAM: ferredoxin [2Fe-2S]-binding; KEGG: mlo:mll3837 isoquinoline 1-oxidoreductase, alpha subunit YP_662171.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: mlo:mll3836 aldehyde dehydrogenase YP_662172.1 KEGG: mlo:mll3835 hypothetical protein YP_662173.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_4488 TonB-dependent receptor YP_662176.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: protein of unknown function DUF839; KEGG: rba:RB8885 conserved hypothetical protein-putative phosphatase YP_662177.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: pub:SAR11_0977 sec-independent protein translocase protein TatC YP_662178.1 KEGG: bpa:BPP4277 Sec-independent protein translocase protein YP_662179.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: mlo:msl1085 sec-independent protein translocase protein tatA/E YP_662181.1 KEGG: ppr:PBPRA0236 putative 5-carboxymethyl-2-hydroxymuconate delta isomerase YP_662182.1 PFAM: Patatin; KEGG: pha:PSHAb0541 putative hydrolase similar to YjjU YP_662184.1 KEGG: nar:Saro_2352 hypothetical protein YP_662185.1 PFAM: beta-lactamase; KEGG: sha:SH0620 hypothetical protein YP_662186.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pha:PSHAb0256 transporter involved in threonine and homoserine efflux YP_662187.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: son:SO1876 NodD transcription activator-related protein YP_662188.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO1873 short chain dehydrogenase YP_662190.1 PFAM: metal-dependent protein hydrolase; KEGG: cps:CPS_2163 hypothetical protein YP_662191.1 PFAM: helix-turn-helix, AraC type; KEGG: cps:CPS_4694 transcriptional regulator, AraC family YP_662192.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: cps:CPS_4693 alkylhydroperoxidase AhpD family core domain protein YP_662193.1 PFAM: Rieske [2Fe-2S] region; KEGG: fra:Francci3_0190 Rieske (2Fe-2S) protein YP_662194.1 PFAM: NUDIX hydrolase; KEGG: ccr:CC2457 hypothetical protein YP_662195.1 KEGG: ilo:IL1489 hypothetical protein YP_662196.1 PFAM: Cold-shock protein, DNA-binding protein of unknown function DUF1294; SMART: Cold shock protein; KEGG: neu:NE0717 cold-shock DNA-binding domain YP_662197.1 KEGG: pca:Pcar_0527 hypothetical protein YP_662198.1 KEGG: pca:Pcar_0528 hypothetical protein YP_662199.1 KEGG: vvy:VV1875 hypothetical protein YP_662200.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: ath:At1g22950 oxidoreductase, 2OG-Fe(II) oxygenase family protein YP_662201.1 KEGG: cps:CPS_0414 hypothetical protein YP_662202.1 KEGG: ilo:IL2633 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_662203.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_4885 acetyltransferase, GNAT family YP_662204.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: bcl:ABC0750 oxidoreductase YP_662205.1 PFAM: regulatory protein, TetR; KEGG: bur:Bcep18194_B0251 transcriptional regulator, TetR family YP_662206.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: pfo:Pfl_2939 zinc-containing alcohol dehydrogenase superfamily YP_662207.1 KEGG: sco:SCO3487 hydrolase YP_662208.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: rba:RB12740 gluconolactonase [precursor] YP_662209.1 KEGG: sco:SCO3487 hydrolase YP_662210.1 PFAM: KDPG and KHG aldolase; KEGG: oih:OB2214 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase YP_662211.1 PFAM: PfkB; KEGG: mta:Moth_0419 PfkB YP_662212.1 PFAM: major facilitator superfamily MFS_1; KEGG: bld:BLi04069 putative galactonate transporter; RBL01028 YP_662213.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: ret:RHE_PE00096 putative galactonate dehydratase protein YP_662214.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: ret:RHE_PE00101 probable transcriptional regulator protein, GntR family YP_662215.1 TIGRFAM: exodeoxyribonuclease III exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ppr:PBPRA2737 putative exodeoxyribonuclease III YP_662216.1 KEGG: ppr:PBPRA2767 hypothetical protein YP_662217.1 PFAM: ThiJ/PfpI; KEGG: tfu:Tfu_2826 intracellular protease/amidase, putative YP_662218.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: vfi:VF0649 transcriptional regulators, LysR family YP_662220.1 PFAM: transposase, IS111A/IS1328/IS1533 transposase IS116/IS110/IS902; KEGG: cps:CPS_2742 ISCps7, transposase YP_662221.1 KEGG: vvu:VV12407 hypothetical protein YP_662222.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_0532 glyoxalase family protein YP_662223.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: cps:CPS_0531 transcriptional regulator, LysR family YP_662224.1 PFAM: glycoside hydrolase, family 10; KEGG: xcb:XC_4207 endo-1,4-beta-xylanase A YP_662225.1 KEGG: par:Psyc_1601 hypothetical protein YP_662226.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: eba:ebA1783 outer membrane protein, ortholog involved in agglutination in some bacteria YP_662227.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: eba:ebA1807 ABC transporter, ATP-binding/permease YP_662228.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD; KEGG: eba:ebA1805 HlyD family secretion protein YP_662229.1 PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: eba:ebA1787 hypothetical protein YP_662230.1 KEGG: eba:ebA1785 hypothetical protein YP_662231.1 PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3; SMART: PAC motif; KEGG: dar:Daro_1614 PAS YP_662232.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: lpf:lpl1176 hypothetical protein YP_662233.1 catalyzes the formation of pyruvate from D-cysteine YP_662234.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like; KEGG: noc:Noc_1416 magnesium and cobalt transport protein CorA YP_662235.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_662236.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_662237.1 TIGRFAM: F0F1-ATPase subunit, putative; KEGG: mba:Mbar_A3104 H(+)-transporting ATP synthase, gene 1 YP_662238.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_662239.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0 YP_662240.1 TIGRFAM: ATP synthase F0, B subunit; PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: mba:Mbar_A3100 hypothetical protein YP_662241.1 produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit YP_662242.1 PFAM: H+-transporting two-sector ATPase, gamma subunit; KEGG: mac:MA2433 H(+)-transporting ATP synthase, subunit gamma YP_662243.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bja:bll5770 hypothetical protein YP_662244.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein GAF; KEGG: dar:Daro_3445 PAS:GGDEF YP_662245.1 PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: pha:PSHAa1771 GalR repressor of contiguous operon, likely to bind a galactoside YP_662246.1 PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_3738 hypothetical protein YP_662247.1 PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: pha:PSHAa1771 GalR repressor of contiguous operon, likely to bind a galactoside YP_662248.1 PFAM: Aldose 1-epimerase; KEGG: rba:RB6537 aldose 1-epimerase YP_662249.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pha:PSHAa1768 sodium/hexose cotransport protein YP_662250.1 PFAM: protein of unknown function DUF1080; KEGG: rba:RB1109 putative multi-domain protein YP_662251.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: atc:AGR_L_978 hypothetical protein YP_662252.1 PFAM: glucose-methanol-choline oxidoreductase; KEGG: atc:AGR_L_980 hypothetical protein YP_662253.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Xylose isomerase-like TIM barrel; KEGG: rba:RB12073 hypothetical protein YP_662254.1 PFAM: proton/sugar symporter, LacY nucleoside:H+ symporter major facilitator superfamily MFS_1; KEGG: ecs:ECs2901 putative nucleoside permease protein YP_662255.1 PFAM: AP endonuclease 2-like Xylose isomerase-like TIM barrel; KEGG: atc:AGR_L_986 hypothetical protein YP_662256.1 PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: ccr:CC1630 oxidoreductase, Gfo/Idh/MocA family YP_662257.1 PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: ppr:PBPRA0256 putative transcriptional repressor, LacI family YP_662258.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Xylose isomerase-like TIM barrel; KEGG: bja:bll7636 hypothetical protein YP_662259.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: ret:RHE_PE00101 probable transcriptional regulator protein, GntR family YP_662260.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3737 TonB-dependent receptor YP_662261.1 PFAM: sulfatase; KEGG: rba:RB5295 heparan N-sulfatase YP_662262.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vvu:VV20941 histone acetyltransferase HPA2 YP_662264.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_662265.1 PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: mag:amb4369 transcriptional activatory protein AadR YP_662266.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_662267.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2138 TonB-dependent receptor YP_662268.1 PFAM: Alkaline phosphatase; KEGG: pfo:Pfl_0461 phosphodiesterase/alkaline phosphatase D-like YP_662269.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: pha:PSHAb0368 putative GGDEF domain membrane protein YP_662270.1 PFAM: AFG1-like ATPase; KEGG: son:SO3756 hypothetical ATPase YP_662271.1 PFAM: alpha/beta hydrolase fold; KEGG: rpa:RPA3731 alpha/beta hydrolase fold:esterase/lipase/thioesterase, active site YP_662272.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily; KEGG: eli:ELI_05475 hypothetical protein YP_662273.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: rso:RS05452 putative transmembrane protein YP_662274.1 PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: cvi:CV0244 hypothetical protein YP_662276.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: amine oxidase FAD dependent oxidoreductase; KEGG: baa:BA_2428 flavin containing amine oxidase YP_662277.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_2088 TonB-dependent receptor YP_662278.1 PFAM: protein of unknown function DUF1001; KEGG: cya:CYA_2044 CpeT protein YP_662279.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: oih:OB2671 hypothetical protein YP_662280.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bpm:BURPS1710b_0637 CaiB/BaiF family protein YP_662281.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: fra:Francci3_2430 acyl-CoA dehydrogenase-like YP_662282.1 PFAM: MaoC-like dehydratase; KEGG: yps:YPTB1925 putative transcription regulatory protein YP_662283.1 PFAM: HpcH/HpaI aldolase; KEGG: hma:rrnB0257 citrate lyase beta chain YP_662284.1 PFAM: polysaccharide deacetylase; KEGG: pfl:PFL_4366 polysaccharide deacetylase family protein YP_662285.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mac:MA0415 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase YP_662287.1 TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin, Txe/YoeB; KEGG: ilo:IL0286 RelE-like protein YP_662289.1 TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: pae:PA3242 probable lauroyl acyltransferase YP_662290.1 PFAM: sulfatase; KEGG: rba:RB695 N-acetyl-galactosamine-6-sulfatase (GALNS) YP_662291.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: ppr:PBPRA0124 putative MadN protein YP_662292.1 KEGG: sil:SPO2303 hypothetical protein YP_662293.1 KEGG: cps:CPS_2637 hypothetical protein YP_662295.1 PFAM: putative methyltransferase UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: syf:Synpcc7942_2054 hypothetical protein YP_662297.1 PFAM: isochorismatase hydrolase; KEGG: nph:NP6214A homolog 1 to N-carbamoylsarcosine amidase YP_662298.1 PFAM: polysaccharide deacetylase; KEGG: cyb:CYB_1488 polysaccharide deacetylase family protein YP_662299.1 PFAM: polysaccharide deacetylase; KEGG: reu:Reut_B4195 polysaccharide deacetylase YP_662300.1 KEGG: gsu:GSU0198 hypothetical protein YP_662301.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_03985 histone acetyltransferase HPA2/related acetyltransferase YP_662303.1 KEGG: lla:L130023 unknown protein YP_662305.1 PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase YP_662307.1 KEGG: ana:all2200 unknown protein YP_662308.1 KEGG: rso:RSc2612 hypothetical protein YP_662309.1 PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase YP_662312.1 KEGG: ftu:FTT0496 hypothetical protein YP_662313.1 KEGG: ade:Adeh_2330 hypothetical protein YP_662315.1 KEGG: syn:sll1378 periplasmic protein, function unknown YP_662316.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily; KEGG: gme:Gmet_2234 thioesterase superfamily YP_662317.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: tte:TTE0544 Enoyl-CoA hydratase/carnithine racemase YP_662319.1 KEGG: ana:all5013 unknown protein YP_662320.1 KEGG: bha:BH2279 hypothetical protein YP_662321.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0936 TonB-dependent receptor YP_662322.1 KEGG: lxx:Lxx11970 hemagglutinin/hemolysin-related protein YP_662323.1 TIGRFAM: PEP motif putative anchor-like; KEGG: dar:Daro_2686 protein of unknown function DUF1555 YP_662324.1 PFAM: Alcohol dehydrogenase, zinc-binding; KEGG: vvu:VV20507 putative NADP-dependent oxidoreductase YP_662325.1 PFAM: glutathione S-transferase-like; KEGG: ava:Ava_5011 glutathione S-transferase-like YP_662326.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: rba:RB8432 probable fusion protein YP_662327.1 PFAM: pyruvate carboxyltransferase; KEGG: aci:ACIAD2820 putative hydroxymethylglutaryl-CoA lyase YP_662328.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ppu:PP3393 CaiB/BaiF family protein YP_662329.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase-like; KEGG: bja:blr0495 3-isopropylmalate dehydratase small subunit YP_662330.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_662331.1 PFAM: alpha/beta hydrolase fold; KEGG: bbr:BB1247 putative hydrolase YP_662332.1 PFAM: FAD linked oxidase-like; KEGG: bur:Bcep18194_A3821 FAD linked oxidase-like YP_662333.1 PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: bbr:BB4084 putative GntR-family transcriptional regulator YP_662335.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ilo:IL2079 protein containing acetyltransferase (GNAT family) domain YP_662336.1 PFAM: protein of unknown function DUF606; KEGG: ilo:IL2078 hypothetical protein YP_662337.1 PFAM: nitroreductase; KEGG: bba:Bd1162 nitroreductase YP_662338.1 PFAM: cyclic nucleotide-binding; KEGG: ilo:IL2076 catabolite gene activator protein YP_662340.1 PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_3036 protein of unknown function DUF214 YP_662341.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: gme:Gmet_3037 ABC transporter-related protein YP_662342.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: ade:Adeh_2972 secretion protein HlyD YP_662343.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: noc:Noc_1548 succinylglutamate desuccinylase/aspartoacylase YP_662344.1 TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201 RimK-like ATP-grasp; KEGG: vvy:VVA1311 ribosomal protein S6 modification protein YP_662346.1 PFAM: glucose-methanol-choline oxidoreductase GMC oxidoreductase; KEGG: ppr:PBPRA2212 hypothetical alcohol dehydrogenase YP_662347.1 PFAM: peptidase S9, prolyl oligopeptidase active site region peptidase S9A, prolyl oligopeptidase-like beta-propeller; KEGG: ilo:IL0145 prolyl endopeptidase YP_662349.1 KEGG: tbd:Tbd_2342 hypothetical protein YP_662350.1 PFAM: Auxin Efflux Carrier; KEGG: vch:VCA0024 hypothetical protein YP_662351.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: son:SO3564 peptidyl-dipeptidase Dcp YP_662352.1 KEGG: cps:CPS_0854 amidohydrolase family protein; TIGRFAM: amidohydrolase; PFAM: peptidase M20 peptidase dimerisation YP_662353.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: cps:CPS_2699 transcription regulator, LysR family YP_662354.1 PFAM: protein of unknown function DUF1611; KEGG: rru:Rru_A2557 protein of unknown function DUF1611 YP_662355.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: sil:SPO3606 mandelate racemase/muconate lactonizing enzyme family protein YP_662356.1 KEGG: pha:PSHAb0327 hypothetical protein YP_662357.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space YP_662358.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan YP_662359.1 Multifunctional regulator of fatty acid metabolism YP_662360.1 involved in regulation of intracellular pH under alkaline conditions YP_662361.1 PFAM: Disulphide bond formation protein DsbB; KEGG: cps:CPS_3513 disulfide bond formation protein B YP_662362.1 PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: pmm:PMM0425 hypothetical protein YP_662363.1 PFAM: protein of unknown function UPF0153; KEGG: cps:CPS_3515 hypothetical protein YP_662365.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ecj:JW1169 predicted isomerase/hydrolase YP_662366.1 TIGRFAM: lytic murein transglycosylase; KEGG: pha:PSHAb0509 putative periplasmic lytic murein transglycosylase YP_662367.1 PFAM: protein of unknown function DUF709; KEGG: sfx:S1256 hypothetical protein YP_662368.1 TIGRFAM: ribonuclease D; PFAM: HRDC 3'-5' exonuclease; KEGG: yps:YPTB2058 ribonuclease D YP_662369.1 PFAM: AMP-dependent synthetase and ligase; KEGG: stm:STM1818 acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) YP_662370.1 PFAM: alpha/beta hydrolase fold PGAP1-like; KEGG: son:SO2582 hydrolase, alpha/beta fold family YP_662371.1 TIGRFAM: outer membrane lipoprotein, Slp family; PFAM: outer membrane lipoprotein Slp; KEGG: ilo:IL1829 starvation-inducible outer membrane lipoprotein YP_662373.1 PFAM: peptidase M22, glycoprotease; KEGG: pha:PSHAb0498 putative protease YP_662374.1 SMART: Helicase c2 DEAD/DEAH box helicase-like; KEGG: ppr:PBPRA1070 putative ATP-dependent helicase, DinG family YP_662375.1 PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: eli:ELI_03145 alpha-amylase, putative YP_662376.1 KEGG: ddi:DDB0168484 hypothetical protein YP_662377.1 PFAM: flagellar L-ring protein; KEGG: vfi:VF1871 flagellar L-ring protein FlgH YP_662378.1 KEGG: cps:CPS_1468 putative lipoprotein YP_662379.1 PFAM: SEC-C motif; KEGG: tde:TDE1898 preprotein translocase, SecA subunit YP_662380.1 PFAM: homocysteine S-methyltransferase; KEGG: mlo:mlr1281 putative betaine-homocysteine S-methyltransferase YP_662383.1 PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: vch:VC1349 sensory box sensor histidine kinase/response regulator YP_662384.1 KEGG: ilo:IL1417 outer membrane protein, porin family YP_662385.1 KEGG: xcb:XC_1692 hypothetical protein YP_662386.1 KEGG: pca:Pcar_2559 hypothetical protein YP_662387.1 PFAM: protein of unknown function DUF1568; KEGG: son:SO4547 hypothetical protein YP_662388.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 pseudouridine synthase; KEGG: eca:ECA2291 putative RNA pseudouridylate synthase YP_662389.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: pha:PSHAa1341 hypothetical protein YP_662390.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: son:SO3015 putative segregation and condensation protein A YP_662391.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC-like; KEGG: yps:YPTB2134 hypothetical protein YP_662392.1 PFAM: PHP-like; SMART: Phosphoesterase PHP-like; KEGG: cps:CPS_3521 PHP domain protein YP_662393.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_662394.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: yps:YPTB2129 anthranilate synthase component II YP_662395.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_662396.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate YP_662397.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_662398.1 KEGG: vpa:VP1961 tryptophan synthase, alpha subunit; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase, alpha chain YP_662399.1 PFAM: YCII-related; KEGG: ppr:PBPRA2508 conserved hypothetical protein YP_662400.1 PFAM: Class I peptide chain release factor; KEGG: pae:PA0868 hypothetical protein YP_662401.1 KEGG: hch:HCH_02073 rhs family protein YP_662402.1 PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: neu:NE1444 TPR repeat YP_662403.1 PFAM: Propeptide, PepSY amd peptidase M4 YP_662404.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: pha:PSHAa1283 response regulator in two-component regulatory system with PhoQ YP_662405.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region; KEGG: pha:PSHAa1282 sensory histidine kinase in two-component regulatory system with PhoP YP_662406.1 PFAM: MscS Mechanosensitive ion channel; KEGG: dps:DP2962 hypothetical protein YP_662407.1 KEGG: ilo:IL0094 TPR repeats containing protein YP_662408.1 KEGG: tfu:Tfu_1737 oxidoreductase alpha (molybdopterin) subunit; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region YP_662409.1 PFAM: formate dehydrogenase, subunit FdhD; KEGG: pub:SAR11_0681 formate dehydrogenase chain D YP_662410.1 PFAM: protein of unknown function DUF81; KEGG: cps:CPS_1011 hypothetical protein YP_662411.1 KEGG: hch:HCH_01348 integral membrane protein YP_662412.1 KEGG: bja:bll1370 hypothetical protein YP_662413.1 PFAM: beta-lactamase-like; KEGG: pmu:PM0039 arylsulfatase precursor YP_662414.1 KEGG: ppu:PP1756 hypothetical protein YP_662415.1 KEGG: ppu:PP3831 hypothetical protein YP_662416.1 PFAM: regulatory protein, TetR; KEGG: ppr:PBPRB1080 hypothetical protein YP_662417.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: ppr:PBPRB1079 hypothetical oxidoreductase protein YP_662419.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_2464 acetyltransferase, GNAT family YP_662420.1 KEGG: pst:PSPTO1001 hypothetical protein YP_662421.1 KEGG: dme:CG18730-PA CG18730 gene product from transcript CG18730-RA; PFAM: alpha amylase, catalytic region alpha amylase, C-terminal all-beta; SMART: Alpha amylase, catalytic subdomain YP_662422.1 PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: reu:Reut_B3533 regulatory protein GntR, HTH:UbiC transcription regulator-associated YP_662423.1 PFAM: glycoside hydrolase, family 31; KEGG: tfu:Tfu_1613 putative alpha-glucosidase YP_662424.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: bcl:ABC4045 TRAP-type transport system permease small protein YP_662425.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bcl:ABC4044 TRAP-type transport system permease large protein YP_662426.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: chy:CHY_1301 TRAP dicarboxylate transporter, DctP subunit YP_662427.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: nar:Saro_2447 TonB-dependent receptor YP_662429.1 PFAM: cation efflux protein; KEGG: ilo:IL0774 Co/Zn/Cd efflux system component YP_662430.1 PFAM: regulatory protein, MerR; KEGG: cps:CPS_1955 transcriptional regulator, MerR family YP_662431.1 PFAM: acriflavin resistance protein; KEGG: vpa:VPA0809 transporter, AcrB/D/F family YP_662432.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: vpa:VPA0808 putative periplasmic linker protein YP_662433.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: vpa:VPA0807 putative multidrug resistance protein YP_662434.1 PFAM: regulatory protein, TetR; KEGG: vch:VCA0767 transcriptional regulator, TetR family YP_662435.1 KEGG: cjr:CJE0004 hypothetical protein YP_662436.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: oxidoreductase, molybdopterin binding Mo-co oxidoreductase dimerisation domain; KEGG: vpa:VPA1143 putative molybdenum containing oxidoreductase YP_662437.1 PFAM: conserved hypothetical protein 698; KEGG: cte:CT0845 hypothetical protein YP_662438.1 KEGG: eli:ELI_03725 SyrP protein, putative YP_662439.1 PFAM: aldo/keto reductase; KEGG: eli:ELI_03720 aldehyde reductase YP_662440.1 KEGG: tbd:Tbd_0063 hypothetical protein YP_662442.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_662443.1 PFAM: histidinol dehydrogenase; KEGG: vpa:VP1138 histidinol dehydrogenase YP_662444.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_662445.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate YP_662446.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_662447.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_662448.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_662449.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_662450.1 PFAM: phosphoribosyl-AMP cyclohydrolase phosphoribosyl-ATP pyrophosphohydrolase; KEGG: yps:YPTB1555 histidine biosynthesis bifunctional protein YP_662451.1 PFAM: cytochrome B561; KEGG: ppr:PBPRB0400 putative cytochrome b561 YP_662452.1 PFAM: YceI; KEGG: pha:PSHAa1298 periplasmic protein YP_662453.1 PFAM: heat shock protein Hsp20; KEGG: pha:PSHAa0993 small heat shock protein YP_662454.1 KEGG: mag:amb2570 uncharacterized relative of glutathione S-transferase YP_662455.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_662456.1 molecular chaperone YP_662457.1 KEGG: ssn:SSO_0459 recombination and repair; TIGRFAM: recombination protein RecR; PFAM: RecR protein TOPRIM domain containing protein; SMART: Toprim subdomain YP_662458.1 PFAM: conserved hypothetical protein 103; KEGG: ilo:IL1848 hypothetical protein YP_662459.1 KEGG: pha:PSHAa1201 DnaX, DNA polymerase III, gamma/tau subunits; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central region; SMART: ATPase YP_662460.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_662461.1 KEGG: pha:PSHAa1198 hypothetical protein YP_662462.1 PFAM: protein of unknown function DUF692; KEGG: pha:PSHAa1197 hypothetical protein YP_662463.1 KEGG: pha:PSHAa1196 hypothetical protein YP_662464.1 PFAM: beta-lactamase; KEGG: nar:Saro_2025 beta-lactamase YP_662465.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_662466.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3760 TonB-dependent receptor YP_662467.1 KEGG: cps:CPS_1442 hypothetical protein YP_662469.1 KEGG: hch:HCH_05761 hypothetical protein YP_662470.1 PFAM: cobalamin synthesis protein, P47K; KEGG: cps:CPS_1300 cobalamin synthesis protein/P47K family protein YP_662471.1 PFAM: protein of unknown function UPF0118; KEGG: son:SO2920 hypothetical protein YP_662472.1 catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate YP_662473.1 TIGRFAM: conserved hypothetical protein; PFAM: NAD-dependent epimerase/dehydratase Domain of unknown function DUF1731; KEGG: eca:ECA3046 hypothetical protein YP_662474.1 PFAM: protein of unknown function DUF214; KEGG: ilo:IL1766 ABC-type transport system, permease component YP_662475.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: cps:CPS_2309 ABC transporter, ATP-binding domain YP_662476.1 PFAM: lipolytic enzyme, G-D-S-L; KEGG: son:SO2928 acyl-CoA thioesterase I, putative YP_662477.1 PFAM: dihydrouridine synthase, DuS; KEGG: son:SO2006 NifR3/Smm1 family protein YP_662478.1 PFAM: protein of unknown function DUF898, transmembrane; KEGG: sme:SMc00782 hypothetical protein YP_662479.1 PFAM: peptidase M48, Ste24p; KEGG: rso:RSc0644 putative transmembrane protein YP_662481.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_662482.1 PFAM: response regulator receiver; SMART: Tetratricopeptide region; KEGG: pha:PSHAa1088 TPR motives YP_662483.1 TIGRFAM: kynureninase; PFAM: aminotransferase, class V; KEGG: ilo:IL2179 kynureninase YP_662484.1 KEGG: ilo:IL2178 putative lipase/esterase YP_662485.1 KEGG: pha:PSHAa1454 acetyl-CoA acetyltransferase with thiolase domain; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YP_662486.1 PFAM: regulatory protein, MerR; KEGG: ilo:IL0873 transcriptional regulator, MerR family YP_662487.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: son:SO1897 isovaleryl-CoA dehydrogenase YP_662488.1 PFAM: carboxyl transferase; KEGG: cps:CPS_1602 methylcrotonyl CoA carboxylase, beta subunit YP_662489.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gme:Gmet_3291 enoyl-CoA hydratase/isomerase YP_662490.1 PFAM: biotin/lipoyl attachment Carbamoyl-phosphate synthase L chain, ATP-binding Carbamoyl-phosphate synthetase large chain-like biotin carboxylase-like; KEGG: cps:CPS_1600 methylcrotonyl-CoA carboxylase, alpha subunit YP_662491.1 PFAM: pyruvate carboxyltransferase; KEGG: cps:CPS_1599 hydroxymethylglutaryl-CoA lyase YP_662492.1 KEGG: cps:CPS_4304 hypothetical protein YP_662493.1 KEGG: jan:Jann_0111 hypothetical protein YP_662494.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_662495.1 PFAM: alpha/beta hydrolase fold; KEGG: cps:CPS_4105 hypothetical protein YP_662496.1 PFAM: major facilitator superfamily MFS_1; KEGG: ccr:CC2486 major facilitator family transporter YP_662497.1 KEGG: pha:PSHAb0355 putative acyl-CoA thioesterase, TesB family YP_662498.1 KEGG: cps:CPS_4407 hypothetical protein YP_662499.1 PFAM: Tetratricopeptide TPR_2; KEGG: ilo:IL1078 uncharacterized conserved protein, contains TPR repeats YP_662500.1 PFAM: OmpA/MotB; KEGG: pha:PSHAa1870 required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA YP_662501.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_662502.1 PFAM: TolA; KEGG: son:SO2749 tolA protein YP_662503.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ilo:IL1082 biopolymer transport protein YP_662504.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: cps:CPS_1728 TolQ protein YP_662505.1 TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily; KEGG: cps:CPS_1727 conserved hypothetical protein YP_662506.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_662507.1 KEGG: vfi:VF0951 holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein, RuvA RuvA-like; SMART: Helix-hairpin-helix DNA-binding, class 1 YP_662508.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_662509.1 converts dATP to dAMP and pyrophosphate YP_662510.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_662511.1 PFAM: protein of unknown function DUF72; KEGG: pha:PSHAa1939 hypothetical protein YP_662512.1 KEGG: pha:PSHAa1625 ABC-type Na+ efflux pump, permease component YP_662513.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: pha:PSHAa1626 sodium ABC exporter ATP-binding protein YP_662514.1 KEGG: pha:PSHAa2825 hypothetical protein YP_662515.1 KEGG: pha:PSHAa1627 hypothetical protein YP_662516.1 PFAM: peptidase M28; KEGG: pha:PSHAa1628 glutamate carboxypeptidase II YP_662517.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP YP_662518.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: lpl:lp_0060 short-chain dehydrogenase/oxidoreductase YP_662519.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: par:Psyc_0011 probable zinc-containing alcohol dehydrogenase YP_662520.1 KEGG: hch:HCH_06743 hypothetical protein YP_662522.1 PFAM: Radical SAM; KEGG: cps:CPS_2883 radical SAM domain protein YP_662523.1 TIGRFAM: exsB protein; PFAM: ExsB; KEGG: pha:PSHAa1116 regulator protein YP_662524.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pfl:PFL_0732 transcriptional regulator, LysR family YP_662525.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_662526.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cps:CPS_2888 MATE efflux family protein YP_662527.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: ppr:PBPRA2560 putative RnfA-related protein (RnfA, Predicted NADH:ubiquinone oxidoreductase, subunit RnfA) YP_662528.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen YP_662529.1 TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: pha:PSHAa1103 electron transport complex protein RnfC YP_662530.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents YP_662531.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding; KEGG: vch:VC1013 RnfG-related protein YP_662532.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase YP_662533.1 KEGG: vpa:VP2108 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif HhH-GPD; SMART: Iron-sulfur cluster loop YP_662534.1 PFAM: DoxX; KEGG: jan:Jann_0759 hypothetical protein YP_662535.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: son:SO1907 transcriptional regulator, LysR family YP_662536.1 SMART: Iron-sulfur cluster loop; KEGG: ppr:PBPRA2566 putative endonuclease III YP_662537.1 KEGG: sil:SPO0890 lipase, putative YP_662538.1 TIGRFAM: Fibrobacter succinogenes major paralogous domain; KEGG: cte:CT0060 hypothetical protein YP_662539.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rba:RB4725 probable oxidoreductase yajO1 YP_662540.1 PFAM: helix-turn-helix, AraC type AraC-type transcriptional regulator-like; KEGG: bte:BTH_I0153 transcriptional regulator, AraC family YP_662541.1 SMART: Iron-sulfur cluster loop; KEGG: ilo:IL1800 endonuclease III YP_662542.1 KEGG: btk:BT9727_4273 hypothetical protein YP_662543.1 PFAM: protein of unknown function DUF81; KEGG: oih:OB0991 hypothetical protein YP_662544.1 KEGG: pha:PSHAa0525 hypothetical protein YP_662545.1 KEGG: cps:CPS_4835 putative heat shock protein 70 family protein YP_662546.1 KEGG: mag:amb2868 hypothetical protein YP_662547.1 PFAM: TPR repeat; SMART: Tetratricopeptide region; KEGG: cps:CPS_3751 TPR domain protein YP_662548.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pha:PSHAa1191 TonB2 protein; iron acquisition via a siderophore-mediated active transport YP_662549.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ilo:IL1856 biopolymer transport protein YP_662550.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: cps:CPS_3754 biopolymer transport ExbB protein YP_662551.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: ilo:IL1858 TonB system biopolymer transport component YP_662552.1 KEGG: cps:CPS_3756 hypothetical protein YP_662553.1 PFAM: Methyltransferase type 11; KEGG: pha:PSHAa1988 S-adenosyl-L-methionine-dependent methyltransferase YP_662554.1 PFAM: TPR repeat Sel1-like repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: aae:aq_1088 hypothetical protein YP_662555.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: zmo:ZMO1522 hypothetical protein YP_662556.1 KEGG: cps:CPS_3759 hypothetical protein YP_662557.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: son:SO2638 leucine dehydrogenase YP_662558.1 PFAM: regulatory proteins, AsnC/Lrp; KEGG: ppu:PP4595 transcriptional regulator, AsnC family YP_662559.1 KEGG: vpa:VP1349 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_662560.1 PFAM: sigma-54 factor, interaction region amino acid-binding ACT; SMART: PAS ATPase; KEGG: pha:PSHAa2157 transcriptional regulatory protein TyrR YP_662561.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin YP_662562.1 PFAM: conserved hypothetical protein 1620; KEGG: vfi:VFA0315 hypothetical protein YP_662563.1 PFAM: protein of unknown function DUF463, YcjX-like protein; KEGG: yps:YPTB2266 hypothetical protein YP_662564.1 PFAM: PspC; KEGG: pha:PSHAa2047 transcriptional activator of the psp operon with PspB, phage shock protein YP_662565.1 acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding YP_662566.1 PFAM: PspA/IM30; KEGG: cps:CPS_3772 phage shock protein A YP_662567.1 PFAM: sigma-54 factor, interaction region helix-turn-helix, Fis-type ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: cps:CPS_3774 sigma-54 depedent transcriptional activator PspF YP_662568.1 PFAM: extracellular solute-binding protein, family 5; KEGG: pha:PSHAa2051 ABC transporter periplasmic peptide-binding protein YP_662569.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pha:PSHAa2052 peptide transport protein (ABC superfamily, membrane) YP_662570.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pha:PSHAa2053 peptide transport protein (ABC superfamily, membrane) YP_662571.1 KEGG: ppr:PBPRA2444 putative peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase YP_662572.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: son:SO1801 peptide ABC transporter, ATP-binding protein YP_662573.1 KEGG: pha:PSHAa0540 oxaloacetate decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit YP_662574.1 catalyzes the formation of pyruvate from oxaloacetate YP_662575.1 TIGRFAM: sodium pump decarboxylases, gamma subunit; PFAM: sodium pump decarboxylase, gamma subunit; KEGG: mca:MCA2481 oxaloacetate decarboxylase, gamma subunit YP_662576.1 PFAM: carbon storage regulator; KEGG: vpa:VP2546 carbon storage regulator YP_662577.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_662578.1 PFAM: regulatory protein RecX; KEGG: vpa:VP2549 regulatory protein RecX YP_662579.1 PFAM: protein of unknown function DUF482; KEGG: cps:CPS_0679 hypothetical protein YP_662580.1 PFAM: protein of unknown function DUF938; KEGG: tbd:Tbd_0032 hypothetical protein YP_662581.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis YP_662582.1 KEGG: son:SO3200 hypothetical protein YP_662583.1 PFAM: CheW-like protein; KEGG: pha:PSHAa0818 purine-binding chemotaxis protein YP_662584.1 PFAM: CheW-like protein; KEGG: pha:PSHAa0817 conserved protein of unknown function; putative CheW-like protein YP_662585.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pha:PSHAa0816 partitioning protein A YP_662586.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_662587.1 PFAM: CheW-like protein ATP-binding region, ATPase-like Signal transducing histidine kinase, homodimeric Hpt; KEGG: son:SO3207 chemotaxis protein YP_662588.1 PFAM: Chemotaxis phosphatase, CheZ; KEGG: pha:PSHAa0811 chemotaxis protein CheZ YP_662589.1 PFAM: response regulator receiver; KEGG: son:SO3209 chemotaxis protein CheY YP_662590.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes YP_662591.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pha:PSHAa0808 flagellar biosynthetic protein FlhG YP_662592.1 PFAM: GTP-binding signal recognition particle SRP54, G-domain; SMART: ATPase; KEGG: pha:PSHAa0807 flagellar biosynthesis protein YP_662593.1 membrane protein involved in the flagellar export apparatus YP_662594.1 TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: pha:PSHAa0805 flagellar biosynthesis protein YP_662595.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus YP_662596.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: son:SO3217 flagellar biosynthetic protein FliQ YP_662597.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_662598.1 PFAM: flagellar biosynthesis protein, FliO; KEGG: pha:PSHAa0801 flagellar protein YP_662599.1 One of three proteins involved in switching the direction of the flagellar rotation YP_662600.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation YP_662601.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring YP_662602.1 PFAM: flagellar hook-length control protein; KEGG: cps:CPS_1507 putative flagellar hook-length control protein YP_662603.1 TIGRFAM: flagellar export protein FliJ; KEGG: ilo:IL1196 flagellar biosynthesis chaperone YP_662604.1 involved in type III protein export during flagellum assembly YP_662605.1 binds to and inhibits the function of flagella specific ATPase FliI YP_662606.1 One of three proteins involved in switching the direction of the flagellar rotation YP_662607.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_662608.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: cps:CPS_1501 flagellar hook-basal body complex protein FliE YP_662609.1 PFAM: response regulator receiver sigma-54 factor, interaction region helix-turn-helix, Fis-type; SMART: ATPase; KEGG: cps:CPS_1500 flagellar regulatory protein C YP_662610.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: pha:PSHAa0789 sensory box sensor histidine kinase in two-component regulatory system YP_662611.1 PFAM: sigma-54 factor, interaction region helix-turn-helix, Fis-type ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: pha:PSHAa0787 flagellar regulatory protein A (polar flagellae) YP_662612.1 PFAM: flagellin-like; KEGG: pha:PSHAa0781 flagellin YP_662613.1 PFAM: protein of unknown function DUF115; KEGG: hch:HCH_04821 hypothetical protein YP_662615.1 PFAM: Cephalosporin hydroxylase; KEGG: sme:SMb21425 hypothetical protein YP_662616.1 KEGG: mhu:Mhun_3120 hypothetical protein YP_662617.1 PFAM: formyl transferase-like; KEGG: sye:Syncc9902_1100 phosphoribosylglycinamide formyltransferase YP_662618.1 PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: bte:BTH_I3213 hypothetical protein YP_662619.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: syn:slr1615 perosamine synthetase YP_662620.1 PFAM: Methyltransferase type 11 Methyltransferase type 12 Methyltransferase hyptothetical C-methyltransferase; KEGG: syn:slr1610 hypothetical protein YP_662621.1 PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; KEGG: syn:slr0985 dTDP-4-dehydrorhamnose 3,5-epimerase YP_662622.1 TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: syn:slr0984 CDP-glucose 4,6-dehydratase YP_662623.1 TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: syn:slr0983 alpha-D-glucose-1-phosphate cytidylyltransferase YP_662624.1 PFAM: glycosyl transferase, family 2; KEGG: syn:slr1063 hypothetical protein YP_662625.1 PFAM: glycosyl transferase, family 2; KEGG: cpe:CPE0501 capsular polysaccharide biosynthsis protein YP_662626.1 PFAM: glycosyl transferase, family 2; KEGG: pho:PH0430 hypothetical protein YP_662627.1 PFAM: UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: pfl:PFL_3447 hypothetical protein YP_662628.1 PFAM: Capsule polysaccharide biosynthesis; KEGG: tcx:Tcr_1514 capsule polysaccharide biosynthesis YP_662629.1 PFAM: UDP-galactopyranose mutase; KEGG: gka:GK3316 UDP-galactopyranose mutase YP_662630.1 PFAM: glycosyl transferase, family 2; KEGG: ftu:FTT1452c glycosyltransferase YP_662631.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: rpa:RPA4596 putative 3-oxoacyl-acyl carrier protein reductase YP_662632.1 KEGG: bja:bll7783 hypothetical protein YP_662633.1 KEGG: bja:bsr6286 hypothetical protein YP_662634.1 KEGG: ccr:CC1456 flagellin modification protein FlmH YP_662635.1 KEGG: cac:CAC2186 glycosyltransferase YP_662636.1 PFAM: N-acetylneuraminic acid synthase-like; KEGG: pfl:PFL_1625 NeuB family protein YP_662638.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: ppr:PBPRA2709 putative NeuA YP_662639.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: pfo:Pfl_1519 DegT/DnrJ/EryC1/StrS aminotransferase YP_662640.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: son:SO3271 polysaccharide biosynthesis protein YP_662642.1 PFAM: flagellar protein FliS; KEGG: ilo:IL1133 flagellin-specific chaperone FliS YP_662643.1 PFAM: flagellar hook-associated protein 2-like flagellar hook-associated 2-like flagellin hook IN; KEGG: ilo:IL1134 flagellar capping protein YP_662644.1 PFAM: flagellar protein FlaG protein; KEGG: ppr:PBPRA0914 hypothetical flagellin FlaG YP_662645.1 PFAM: flagellin-like; KEGG: pha:PSHAa0781 flagellin YP_662647.1 PFAM: flagellin-like; KEGG: pha:PSHAa0781 flagellin YP_662648.1 PFAM: flagellin-like; KEGG: pha:PSHAa0781 flagellin YP_662649.1 KEGG: rba:RB12630 hypothetical protein-signal peptide prediction YP_662650.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes. YP_662651.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein protein of unknown function DUF1078-like; KEGG: pha:PSHAa0778 flagellar hook-associated YP_662652.1 KEGG: pha:PSHAa0777 flagellar biosynthesis; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2 YP_662653.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_662654.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod YP_662655.1 makes up the distal portion of the flagellar basal body rod YP_662656.1 TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein protein of unknown function DUF1078-like; KEGG: cps:CPS_1481 flagellar basal-body rod protein FlgF YP_662657.1 the hook connects flagellar basal body to the flagellar filament YP_662658.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production YP_662659.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein protein of unknown function DUF1078-like; KEGG: pha:PSHAa0770 flagellar biosynthesis; cell-proximal portion of basal-body rod YP_662660.1 TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: ilo:IL1147 flagellar basal body protein YP_662661.1 PFAM: MCP methyltransferase, CheR-type; KEGG: son:SO3251 chemotaxis protein methyltransferase CheR YP_662662.1 PFAM: response regulator receiver CheW-like protein; KEGG: pha:PSHAa0766 chemotaxis protein YP_662663.1 required for the assembly of the flagellar basal body P-ring YP_662664.1 PFAM: Anti-sigma-28 factor, FlgM; KEGG: cps:CPS_1472 negative regulator of flagellin synthesis FlgM YP_662665.1 PFAM: FlgN; KEGG: cps:CPS_1471 putative flagellar protein FlgN YP_662666.1 PFAM: protein of unknown function DUF400; KEGG: pha:PSHAa0762 hypothetical protein YP_662667.1 KEGG: cps:CPS_1468 putative lipoprotein YP_662668.1 KEGG: nfa:nfa20300 hypothetical protein YP_662669.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: eli:ELI_04405 putative outer membrane receptor protein YP_662670.1 KEGG: sso:SSO1256 microtubule binding protein, putative YP_662671.1 PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: cps:CPS_3470 neutral zinc metallopeptidase, M1 family YP_662672.1 PFAM: Smr protein/MutS2; KEGG: son:SO2495 Smr domain protein YP_662673.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_662674.1 PFAM: extracellular solute-binding protein, family 3 Lytic transglycosylase, catalytic; KEGG: cps:CPS_3674 transglycosylase, SLT family YP_662675.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: pha:PSHAa2333 tRNA-specific adenosine deaminase YP_662677.1 KEGG: vch:VCA0921 hypothetical protein YP_662678.1 PFAM: YaeQ; KEGG: dps:DP1290 hypothetical protein YP_662679.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_662680.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_662681.1 KEGG: vpa:VP0615 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit nucleic acid binding, OB-fold, tRNA/helicase-type YP_662682.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_662683.1 with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis YP_662684.1 KEGG: pha:PSHAb0136 putative membrane-associated protein with TPR-like domain YP_662685.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_662686.1 KEGG: vch:VC0759 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG protein YP_662687.1 SMART: Helix-turn-helix type 3; KEGG: ilo:IL2035 predicted transcriptional regulator, contains N-terminal xre-type HTH domain YP_662688.1 KEGG: son:SO3314 fimbrial biogenesis and twitching motility protein, putative; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat Peptidoglycan-binding LysM Tetratricopeptide TPR_2; SMART: Tetratricopeptide region YP_662689.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_662690.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_662691.1 KEGG: ilo:IL1733 predicted membrane protein YP_662692.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO1798 peptidyl-prolyl cis-trans isomerase D YP_662693.1 PFAM: histone-like DNA-binding protein; KEGG: ilo:IL1002 bacterial nucleoid DNA-binding protein HU-beta YP_662694.1 KEGG: pha:PSHAa2060 DNA-binding ATP-dependent protease La; heat shock K-protein; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon-like AAA ATPase, central region ATPase associated with various cellular activities, AAA_5; SMART: ATPase YP_662695.1 binds and unfolds substrates as part of the ClpXP protease YP_662696.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_662697.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_662698.1 KEGG: ppr:PBPRA0653 hypothetical protein YP_662699.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_662700.1 PFAM: protein of unknown function DUF1415; KEGG: ilo:IL2495 hypothetical protein YP_662701.1 KEGG: mca:MCA1564 hypothetical protein YP_662702.1 KEGG: mca:MCA1563 hypothetical protein YP_662703.1 PFAM: ABC-2 type transporter; KEGG: pae:PA3671 putative ABC-2 type transport system permease protein YP_662704.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: pae:PA3672 putative ABC-2 type transport system ATP-binding protein YP_662705.1 KEGG: ilo:IL1877 uncharacterized conserved membrane protein, smp family YP_662706.1 PFAM: TatD-related deoxyribonuclease; KEGG: ilo:IL1878 Mg-dependent DNase homolog YP_662707.1 KEGG: pha:PSHAa0658 pyridoxine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_662708.1 TIGRFAM: small GTP-binding protein GTP-binding GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related KH, type 2; KEGG: pha:PSHAa0733 GTP-binding protein era YP_662709.1 PFAM: ribonuclease III double-stranded RNA binding; KEGG: cps:CPS_4122 ribonuclease III YP_662710.1 KEGG: ilo:IL0811 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B YP_662711.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_662712.1 PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: vpa:VP2575 sigma-E factor regulatory protein RseC YP_662713.1 PFAM: MucB/RseB; KEGG: cps:CPS_4127 sigma-E factor regulatory protein RseB YP_662714.1 KEGG: son:SO1343 sigma-E factor negative regulatory protein YP_662715.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_662716.1 KEGG: vpa:VP2580 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like FAD dependent oxidoreductase YP_662717.1 PFAM: MaoC-like dehydratase; KEGG: son:SO0559 MaoC domain protein YP_662719.1 PFAM: protein of unknown function DUF339; KEGG: ilo:IL0819 hypothetical protein YP_662720.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: ppr:PBPRA3100 hypothetical protein YP_662721.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pha:PSHAa0721 FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) YP_662722.1 PFAM: nitrogen regulatory protein P-II; KEGG: ilo:IL1185 nitrogen regulatory protein PII YP_662723.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_662724.1 TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: tbd:Tbd_1861 hypothetical protein YP_662725.1 KEGG: tbd:Tbd_1862 hypothetical protein YP_662726.1 TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: eba:ebA5111 hypothetical protein YP_662727.1 KEGG: eba:ebA5112 fimbrial protein pilin similar to FimU YP_662728.1 PFAM: methylation; KEGG: tbd:Tbd_1865 pilus assembly protein YP_662729.1 PFAM: methylation; KEGG: xoo:XOO3202 pre-pilin like leader sequence YP_662730.1 PFAM: methylation; KEGG: noc:Noc_2275 general secretion pathway protein H YP_662731.1 KEGG: son:SO3525 type IV pilin biogenesis protein, putative YP_662733.1 TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: reu:Reut_A0785 putative Tfp pilus assembly protein PilW YP_662735.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_662736.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pha:PSHAa0920 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) YP_662737.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_662738.1 TIGRFAM: isoleucyl-tRNA synthetase; KEGG: vvy:VV0687 isoleucyl-tRNA synthetase YP_662739.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: vpa:VP0533 riboflavin kinase/FMN adenylyltransferase YP_662740.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN-like; KEGG: son:SO3534 MviN protein YP_662741.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_662742.1 PFAM: peptidase M20 protease-associated PA peptidase M28; KEGG: son:SO3539 peptidase, M28D family YP_662743.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: ppr:PBPRA2972 hypothetical protein YP_662744.1 PFAM: pseudouridine synthase; KEGG: vfi:VF0613 tRNA pseudouridine synthase C YP_662745.1 KEGG: cps:CPS_3650 hypothetical protein YP_662746.1 KEGG: pha:PSHAa1972 hypothetical protein YP_662747.1 KEGG: ilo:IL0852 hypothetical protein YP_662748.1 KEGG: cps:CPS_3529 hypothetical protein YP_662749.1 KEGG: pfo:Pfl_0169 hypothetical protein YP_662750.1 KEGG: son:SO1612 hypothetical protein YP_662752.1 putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function YP_662753.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis YP_662754.1 PFAM: conserved hypothetical protein 730; KEGG: cps:CPS_3537 lysine decarboxylase family protein YP_662755.1 KEGG: ilo:IL0859 SmpA/OmlA family lipoprotein YP_662757.1 catalyzes the formation of 2-oxoglutarate from isocitrate YP_662758.1 KEGG: pha:PSHAa0835 competence protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding, class 1 YP_662759.1 KEGG: ppr:PBPRA2674 putative UTP-glucose-1-phosphateuridylyltransferase, galU; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase YP_662760.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: hch:HCH_04682 UDP-glucose dehydrogenase YP_662761.1 KEGG: ilo:IL0566 hypothetical protein YP_662762.1 KEGG: sdy:SDY_0962 putative regulator YP_662763.1 PFAM: protein of unknown function DUF1017; KEGG: son:SO3158 polysaccharide synthesis-related protein YP_662764.1 PFAM: protein of unknown function DUF940, membrane lipoprotein putative; KEGG: sfx:S3555 hypothetical protein YP_662765.1 KEGG: noc:Noc_2177 rhamnosyltransferase YP_662766.1 KEGG: vfi:VF0175 glycosyltransferase YP_662767.1 PFAM: glycosyl transferase, family 2; KEGG: pst:PSPTO1074 glycosyl transferase, group 2 family protein YP_662769.1 KEGG: mca:MCA0624 hypothetical protein YP_662770.1 KEGG: syd:Syncc9605_2166 hypothetical protein YP_662771.1 TIGRFAM: cytidyltransferase-related domain; PFAM: Riboflavin kinase / FAD synthetase cytidylyltransferase; KEGG: cps:CPS_4205 glycerol-3-phosphate cytidyltransferase YP_662772.1 PFAM: coagulation factor 5/8 type-like; KEGG: jan:Jann_0820 hypothetical protein YP_662773.1 KEGG: jan:Jann_0820 hypothetical protein YP_662775.1 KEGG: psp:PSPPH_0971 hypothetical protein YP_662776.1 PFAM: glycosyl transferase, group 1; KEGG: sme:SMb21308 putative glycosyltransferase, forming alpha glycosyl linkages protein YP_662777.1 PFAM: glycosyl transferase, family 2; KEGG: sme:SMb21313 putative bifunctional glycosyltransferase, forming alpha-glycosyl and beta-glycosyl linkages protein YP_662778.1 PFAM: glycosyl transferase, family 2 glycosyl transferase, group 1; KEGG: xcc:XCC2933 glycosyl transferase YP_662780.1 PFAM: glycosyl transferase, group 1; KEGG: rsp:RSP_3985 hypothetical protein YP_662781.1 KEGG: sye:Syncc9902_0124 hypothetical protein YP_662783.1 KEGG: sye:Syncc9902_0128 hypothetical protein YP_662785.1 KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein YP_662787.1 PFAM: methylation YP_662788.1 PFAM: methylation YP_662789.1 PFAM: methylation YP_662790.1 TIGRFAM: general secretion pathway protein G; PFAM: methylation type II secretion system protein G; KEGG: pae:PA2675 probable type II secretion system protein YP_662791.1 PFAM: type II secretion system protein; KEGG: pae:PA2676 probable type II secretion system protein YP_662792.1 PFAM: type II secretion system protein E; SMART: ATPase; KEGG: pae:PA2677 probable type II secretion protein YP_662796.1 PFAM: type II and III secretion system protein NolW-like; KEGG: pae:PA1382 probable type II secretion system protein YP_662798.1 PFAM: lipopolysaccharide biosynthesis; KEGG: ecc:c3687 kpsE; putative capsule polysaccharide export transport system permease protein YP_662799.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: cjr:CJE1620 capsular polysaccharide ABC transporter, ATP-binding protein YP_662800.1 PFAM: ABC-2 type transporter; KEGG: ecc:c3698 kpsM protein YP_662801.1 PFAM: polysaccharide export protein; KEGG: dvu:DVU3140 capsular polysaccharide transport protein, putative YP_662803.1 TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase, family 4; KEGG: cps:CPS_2091 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase YP_662804.1 TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region major facilitator superfamily MFS_1; KEGG: ilo:IL1430 dipeptide/tripeptide permease YP_662805.1 KEGG: ilo:IL1095 hypothetical protein YP_662806.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: son:SO1664 UDP-glucose 4-epimerase YP_662807.1 PFAM: VacJ-like lipoprotein; KEGG: cps:CPS_1530 VacJ lipoprotein YP_662808.1 PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: pha:PSHAa0830 cytochrome c-type biogenesis protein YP_662809.1 PFAM: cytochrome C biogenesis protein; KEGG: pha:PSHAa0829 cytochrome c-type biogenesis protein CcmH YP_662810.1 TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin; KEGG: pha:PSHAa0828 thiol:disulfide interchange protein DsbE (cytochrome c biogenesis protein CcmG) YP_662811.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: ilo:IL1101 cytochrome c biogenesis factor YP_662812.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane YP_662813.1 PFAM: Heme exporter protein D (CcmD); KEGG: msu:MS0604 heme exporter protein D YP_662814.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: vfi:VF1822 heme chaperone heme-lyase YP_662815.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: son:SO0262 heme exporter protein CcmB YP_662816.1 TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; KEGG: pha:PSHAa0822 heme exporter protein A, ABC superfamily (cytochrome c-type biogenesis ATP-binding protein CcmA) YP_662817.1 KEGG: sha:SH0326 hypothetical protein YP_662818.1 KEGG: son:SO3199 FlhB domain protein YP_662819.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_662820.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: dde:Dde_3339 hypothetical protein YP_662821.1 KEGG: son:SO1590 hypothetical protein YP_662822.1 PFAM: CinA-like; KEGG: stt:t2731 competence/damage-inducible protein CinA C-terminal domain YP_662823.1 TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS-like MutS III MutS II MutS IV; KEGG: stm:STM2909 DNA mismatch repair protein mutS YP_662824.1 PFAM: response regulator receiver; KEGG: pha:PSHAa0913 chemotaxis protein YP_662825.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_662826.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_662827.1 KEGG: ilo:IL0771 hypothetical protein YP_662828.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_662829.1 KEGG: son:SO4235 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_662830.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_662831.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_662832.1 PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: ppr:PBPRA0256 putative transcriptional repressor, LacI family YP_662833.1 PFAM: CreA; KEGG: vch:VCA0800 putative CreA protein YP_662834.1 PFAM: glycosyltransferase 36 glycosyltransferase 36 associated; KEGG: tma:TM1848 cellobiose-phosphorylase YP_662835.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: cps:CPS_3707 sugar:cation symporter family protein YP_662836.1 PFAM: tryptophan halogenase; KEGG: cps:CPS_3699 putative tryptophan halogenase YP_662837.1 PFAM: tryptophan halogenase; KEGG: cps:CPS_3700 putative tryptophan halogenase YP_662838.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3698 TonB-dependent receptor YP_662839.1 KEGG: hch:HCH_01476 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain YP_662840.1 KEGG: ppr:PBPRA0441 putative general secretion pathway protein B YP_662841.1 SMART: ATPase; KEGG: pha:PSHAa2267 ATPase and membrane protein YP_662842.1 PFAM: Polynucleotide adenylyltransferase region metal-dependent phosphohydrolase, HD subdomain; KEGG: pmu:PM0247 tRNA nucleotidyltransferase (CCA-adding enzyme) YP_662843.1 KEGG: pha:PSHAa0125 hypothetical protein YP_662844.1 facilitates an early step in the assembly of the 50S subunit of the ribosome YP_662846.1 TIGRFAM: TonB family protein; KEGG: cps:CPS_4804 TonB domain protein YP_662847.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_662848.1 KEGG: eca:ECA3632 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM HemN-like; SMART: Elongator protein 3/MiaB/NifB YP_662849.1 PFAM: DNA methylase N-4/N-6; KEGG: vpa:VP0394 hemagglutinin associated protein YP_662850.1 KEGG: pha:PSHAa0465 hypothetical protein YP_662851.1 PFAM: protein of unknown function DUF1566; KEGG: pha:PSHAa2268 Fimh-like protein YP_662852.1 PFAM: protein of unknown function DUF1566; KEGG: pha:PSHAa2269 hypothetical protein YP_662853.1 PFAM: LrgB-like protein; KEGG: gme:Gmet_1204 LrgB-like protein YP_662854.1 PFAM: LrgA; KEGG: dar:Daro_3105 LrgA YP_662855.1 PFAM: response regulator receiver sigma-54 factor, interaction region helix-turn-helix, Fis-type; SMART: ATPase; KEGG: cps:CPS_5030 sigma-54 dependent DNA-binding response regulator, Fis family YP_662856.1 PFAM: ATP-binding region, ATPase-like; KEGG: cps:CPS_5031 sensor histidine kinase YP_662857.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_662858.1 catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell YP_662859.1 PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B2836 major facilitator superfamily (MFS_1) transporter YP_662860.1 PFAM: fatty acid cistrans isomerase; KEGG: vpa:VPA0677 fatty acid cis/trans isomerase YP_662863.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: vch:VCA1055 transcriptional regulator, LysR family YP_662864.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: vch:VCA1054 hypothetical protein YP_662865.1 KEGG: ccr:CC1285 hypothetical protein YP_662866.1 PFAM: MgtC/SapB transporter; KEGG: pha:PSHAa1383 transporter YP_662867.1 KEGG: pfl:PFL_5409 hypothetical protein YP_662868.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily; KEGG: bte:BTH_I2491 uncharacterized domain 1, putative YP_662869.1 KEGG: cps:CPS_3850 hypothetical protein YP_662870.1 KEGG: cps:CPS_3851 hypothetical protein YP_662871.1 PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: cps:CPS_3852 RNA polymerase sigma factor, sigma-70 family YP_662872.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ilo:IL2577 transcriptional regulator of LysR family YP_662873.1 PFAM: phosphate-selective porin O and P; KEGG: eli:ELI_11870 hypothetical protein YP_662874.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU; KEGG: pae:PA5365 phosphate transport system regulatory protein YP_662875.1 KEGG: mca:MCA1074 phosphate ABC transporter, ATP-binding protein; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: ATPase YP_662876.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA1073 phosphate ABC transporter, permease protein YP_662877.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA1072 phosphate ABC transporter, permease protein YP_662878.1 KEGG: mca:MCA0949 phosphate binding protein, putative YP_662879.1 PFAM: phosphate transporter; KEGG: ilo:IL2207 phosphate permease YP_662880.1 PFAM: protein of unknown function DUF47; KEGG: pha:PSHAa0313 hypothetical protein YP_662881.1 PFAM: amino acid-binding ACT; KEGG: ppr:PBPRA0727 hypothetical protein YP_662882.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_662883.1 PFAM: Ppx/GppA phosphatase; KEGG: vvy:VV0726 exopolyphosphatase YP_662884.1 KEGG: pha:PSHAb0247 hypothetical protein YP_662885.1 KEGG: ftu:FTT0911 hypothetical protein YP_662886.1 KEGG: pha:PSHAb0085 putative orphan protein YP_662887.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis YP_662888.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_662889.1 KEGG: pha:PSHAa0594 D-erythrose 4-phosphate dehydrogenase; TIGRFAM: D-erythrose-4-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase dihydrodipicolinate reductase YP_662890.1 TIGRFAM: transketolase; PFAM: Transketolase-like Transketolase, central region; KEGG: son:SO0930 transketolase YP_662891.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_662892.1 PFAM: peptidase M48, Ste24p; KEGG: vvy:VVA0755 Zn-dependent protease with chaperone function YP_662893.1 PFAM: MscS Mechanosensitive ion channel; KEGG: tcx:Tcr_1584 MscS mechanosensitive ion channel YP_662894.1 PFAM: protein of unknown function DUF558; KEGG: pha:PSHAa2598 RNA methyltransferase with a deep trefoil knot, RrmA and YibK are structural paralogs YP_662895.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: dvu:DVU0721 sensory box histidine kinase YP_662896.1 KEGG: eli:ELI_11930 glutathione S-transferase YP_662897.1 PFAM: phospholipase/Carboxylesterase; KEGG: hch:HCH_03321 putative esterase/lipase YP_662898.1 TIGRFAM: Glutaredoxin-family domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen glutaredoxin Redoxin; KEGG: pha:PSHAa0759 peroxiredoxin/glutaredoxin protein YP_662899.1 PFAM: protein of unknown function DUF329; KEGG: pha:PSHAa0377 hypothetical protein YP_662900.1 PFAM: protein of unknown function DUF1342; KEGG: ppr:PBPRA3205 conserved hypothetical protein YP_662901.1 KEGG: yps:YPTB0702 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_662902.1 PFAM: peptidase A24A, prepilin type IV peptidase A24A-like; KEGG: pha:PSHAa0380 leader peptide processing enzyme YP_662903.1 PFAM: type II secretion system protein; KEGG: cps:CPS_4448 type IV pilus biogenesis protein PilC YP_662904.1 PFAM: methylation; KEGG: cps:CPS_4444 type IV pilin YP_662905.1 KEGG: ilo:IL0454 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_662906.1 TIGRFAM: conserved hypothetical protein; KEGG: pfl:PFL_0547 Retroviral aspartyl protease domain protein YP_662907.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: hit:NTHI0411 AmpD YP_662908.1 involved in regulation of beta-lactamase; putative signaling protein YP_662909.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: son:SO0423 pyruvate dehydrogenase complex repressor YP_662910.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_662911.1 KEGG: son:SO0425 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase); TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment catalytic domain of components of various dehydrogenase complexes E3 binding YP_662912.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_662913.1 PFAM: peptidase M13, neprilysin peptidase M13; KEGG: ilo:IL0461 secreted zinc metalloproteinase YP_662914.1 PFAM: protein of unknown function DUF1289; KEGG: plu:plu2601 hypothetical protein YP_662915.1 PFAM: alpha/beta hydrolase fold; KEGG: cac:CAP0097 carboxyl esterase, a/b hydrolase YP_662916.1 KEGG: cps:CPS_4407 hypothetical protein YP_662917.1 KEGG: ilo:IL2210 putative salt-induced outer membrane protein YP_662918.1 PFAM: protein of unknown function DUF481; KEGG: pha:PSHAa0397 hypothetical protein YP_662919.1 KEGG: cps:CPS_0914 hypothetical protein YP_662920.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: cps:CPS_0913 sensory box sensor/GGDEF/EAL domain protein YP_662921.1 KEGG: psp:PSPPH_3940 hypothetical protein YP_662922.1 KEGG: pha:PSHAa2076 hypothetical protein ; membrane protein YP_662923.1 KEGG: ilo:IL1019 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding Semialdehyde dehydrogenase, dimerisation region YP_662924.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: cps:CPS_3806 erythronate-4-phosphate dehydrogenase YP_662925.1 PFAM: alpha/beta hydrolase fold; KEGG: pae:PA3429 probable epoxide hydrolase YP_662926.1 PFAM: class II aldolase/adducin-like; KEGG: pae:PA3430 probable aldolase YP_662927.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: pfo:Pfl_0199 transcriptional regulator, Crp/Fnr family YP_662928.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: son:SO4077 TonB-dependent receptor, putative YP_662929.1 PFAM: ATP-binding region, ATPase-like; KEGG: ilo:IL0167 signal transduction histidine kinase YP_662930.1 PFAM: response regulator receiver helix-turn-helix, Fis-type; KEGG: ilo:IL0166 response regulator with a fis-type DNA-binding domain (CheY, fis domains) YP_662933.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: noc:Noc_0226 PAS sensor diguanylate cyclase and phophodiesterase YP_662934.1 KEGG: rru:Rru_A1207 exopolyphosphatase-related protein YP_662936.1 PFAM: peptidase M23B; KEGG: hch:HCH_05221 membrane protein related to metalloendopeptidase YP_662937.1 KEGG: son:SO2179 hypothetical protein YP_662938.1 PFAM: 37 kDa nucleoid-associated protein; KEGG: pha:PSHAa1817 nucleoid-associated protein NdpA YP_662939.1 PFAM: protein of unknown function DUF1414; KEGG: pmu:PM1884 hypothetical HI0840 YP_662940.1 KEGG: ilo:IL0678 membrane-associated hydrolase of alkaline phosphatase superfamily YP_662941.1 KEGG: vpa:VP2160 rRNA (guanine-N1-)-methyltransferase YP_662942.1 PFAM: major facilitator superfamily MFS_1; KEGG: bsu:BG13075 glucose/mannose:H+ symporter YP_662943.1 PFAM: beta-ketoacyl synthase; KEGG: pha:PSHAa2080 3-oxoacyl-[acyl-carrier-protein] synthase I YP_662944.1 PFAM: FAD dependent oxidoreductase protein of unknown function DUF752; KEGG: plu:plu3185 hypothetical protein YP_662945.1 KEGG: sdy:SDY_2524 hypothetical protein YP_662946.1 PFAM: ATP-NAD/AcoX kinase; KEGG: pha:PSHAa0987 hypothetical protein YP_662947.1 PFAM: protein of unknown function DUF462; KEGG: cps:CPS_3812 hypothetical protein YP_662948.1 KEGG: cps:CPS_3694 hypothetical protein YP_662949.1 KEGG: hch:HCH_01084 hypothetical protein YP_662950.1 PFAM: thioesterase superfamily; KEGG: pae:PA3130 hypothetical protein YP_662951.1 PFAM: peptidase A2A, retrovirus, catalytic; KEGG: bja:bll8127 hypothetical protein YP_662952.1 PFAM: protein of unknown function RIO1; KEGG: cps:CPS_4795 RIO1/ZK632.3/MJ0444 family protein YP_662954.1 KEGG: sma:SAV6339 putative 2,3,4, 5-tetrahydropyridine-2-carboxylate N-succinyltransferase YP_662955.1 PFAM: Bile acid:sodium symporter; KEGG: son:SO0534 arsenical pump membrane protein, putative YP_662956.1 PFAM: NADPH-dependent FMN reductase; KEGG: bur:Bcep18194_C6565 NADPH-dependent FMN reductase YP_662957.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: ppu:PP1928 arsenate reductase YP_662958.1 PFAM: regulatory protein, ArsR; KEGG: pha:PSHAb0181 putative arsenic resistance operon regulator YP_662959.1 PFAM: MscS Mechanosensitive ion channel; KEGG: mma:MM2091 putative transport channel protein YP_662960.1 PFAM: ribonuclease H; KEGG: pca:Pcar_2273 hypothetical protein YP_662961.1 KEGG: cps:CPS_1010 hypothetical protein YP_662964.1 PFAM: MltA-interacting MipA; KEGG: bur:Bcep18194_B2733 outer membrane protein YP_662965.1 KEGG: hch:HCH_06947 hypothetical protein YP_662966.1 KEGG: ppr:PBPRB1415 putative homocysteine synthase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes DegT/DnrJ/EryC1/StrS aminotransferase aromatic amino acid beta-eliminating lyase/threonine aldolase YP_662967.1 KEGG: atc:AGR_C_3952 hypothetical protein YP_662968.1 KEGG: cps:CPS_4422 alkaline phosphatase D domain protein YP_662969.1 KEGG: cps:CPS_4421 hypothetical protein YP_662970.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_4420 TonB-dependent receptor YP_662971.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: pfo:Pfl_4221 two component transcriptional regulator, winged helix family YP_662972.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: ppu:PP1652 sensor histidine kinase YP_662973.1 KEGG: cps:CPS_4883 hypothetical protein YP_662974.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ilo:IL0069 outer membrane protein YP_662975.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system YP_662976.1 PFAM: Nucleotidyl transferase; KEGG: son:SO3634 nucleotidyltransferase family protein YP_662977.1 PFAM: aminoglycoside phosphotransferase; KEGG: ilo:IL2228 predicted phosphotransferase related to Ser/Thr protein kinases YP_662978.1 PFAM: OstA-like protein Organic solvent tolerance protein; KEGG: cps:CPS_4523 organic solvent tolerance protein YP_662979.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pha:PSHAa2633 peptidyl-prolyl cis-trans isomerase (PPIase) YP_662980.1 KEGG: pha:PSHAa2634 4-hydroxythreonine-4-phosphate dehydrogenase,(4-(phosphohydroxy)-L-threonine dehydrogenase); TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA YP_662981.1 TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: vfi:VF0286 dimethyladenosine transferase YP_662982.1 protein associated with Co2+ and Mg2+ efflux YP_662983.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP YP_662984.1 PFAM: histidine kinase, HAMP region chemotaxis sensory transducer; KEGG: cps:CPS_4528 methyl-accepting chemotaxis protein YP_662985.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive YP_662986.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_662987.1 PFAM: protein of unknown function DUF192; KEGG: rso:RSc2494 hypothetical signal peptide protein YP_662988.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_662989.1 PFAM: Strictosidine synthase; KEGG: pae:PA1293 hypothetical protein YP_662990.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI; KEGG: xcv:XCV3076 DJ-1/PfpI family protein YP_662991.1 PFAM: Radical SAM Radical SAM-like; SMART: Elongator protein 3/MiaB/NifB; KEGG: pha:PSHAa0508 hypothetical protein YP_662992.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1; KEGG: son:SO1994 membrane-bound lytic transglycolase-related protein YP_662993.1 KEGG: ava:Ava_5067 formylmethionine deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_662994.1 KEGG: son:SO3665 ABC transporter, ATP-binding/permease protein, putative; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase YP_662995.1 PFAM: sulfatase protein of unknown function DUF1705; KEGG: par:Psyc_1161 probable integral membrane protein YP_662996.1 TIGRFAM: PEP motif putative anchor-like; PFAM: lipolytic enzyme, G-D-S-L; KEGG: nmu:Nmul_A1186 lipolytic enzyme, G-D-S-L YP_662997.1 KEGG: cps:CPS_1933 sensory box/GGDEF/EAL domain protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL PAS fold-3 PAS fold-4 PAS fold; SMART: PAS YP_662998.1 KEGG: ehi:19.t00025 hypothetical protein YP_662999.1 KEGG: vpa:VPA1488 hypothetical protein YP_663000.1 KEGG: pha:PSHAa0339 hypothetical protein YP_663001.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa1271 TonB-dependent receptor YP_663002.1 with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity YP_663003.1 PFAM: SMC protein-like; KEGG: vfi:VF1168 exonuclease SbcC YP_663004.1 PFAM: helix-turn-helix motif; KEGG: ecc:c5477 hypothetical protein YP_663005.1 KEGG: eli:ELI_05275 hypothetical protein YP_663007.1 PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase YP_663008.1 KEGG: pst:PSPTO3650 hypothetical protein YP_663009.1 KEGG: psb:Psyr_2348 hypothetical protein YP_663011.1 PFAM: major facilitator superfamily MFS_1; KEGG: ccr:CC2485 major facilitator family transporter YP_663012.1 PFAM: helicase-like type III restriction enzyme, res subunit DEAD/DEAH box helicase-like; KEGG: spt:SPA0627 putative helicase YP_663013.1 PFAM: nucleoside phosphatase GDA1/CD39; KEGG: hsa:954 ectonucleoside triphosphate diphosphohydrolase 2 YP_663014.1 TIGRFAM: Glutaredoxin, GrxB family; PFAM: glutaredoxin 2-like; KEGG: stm:STM1165 glutaredoxin 2 YP_663015.1 PFAM: gamma-glutamyltranspeptidase; KEGG: ccr:CC0531 gamma-glutamyltransferase YP_663018.1 KEGG: pha:PSHAa2514 hypothetical protein YP_663019.1 PFAM: protein of unknown function DUF502; KEGG: pca:Pcar_2706 hypothetical protein YP_663020.1 PFAM: histidine kinase, HAMP region chemotaxis sensory transducer; KEGG: pfl:PFL_4544 methyl-accepting chemotaxis transducer YP_663021.1 PFAM: regulatory proteins, AsnC/Lrp; KEGG: mlo:mlr8310 transcriptional regulator YP_663022.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: dde:Dde_1600 receptor precursor-mostly Fe transport YP_663023.1 PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: bha:BH1882 cytosine permease YP_663024.1 PFAM: protein of unknown function DUF917; KEGG: chy:CHY_1336 hypothetical protein YP_663025.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 pseudouridine synthase; KEGG: ccr:CC1838 ribosomal small subunit pseudouridine synthase A YP_663026.1 PFAM: sulfotransferase TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: pha:PSHAb0253 putative orphan protein ; putative tetratricopeptide repeat domain YP_663027.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAb0254 putative outer membrane TonB-dependent receptor YP_663028.1 PFAM: globin oxidoreductase FAD/NAD(P)-binding Oxidoreductase FAD-binding region; KEGG: pha:PSHAa2880 two-domains flavohemoprotein: one is a heme-containing oxygen binding domain in the N-terminal region and the other is an FAD-containing reductase domain found in the C-terminal region YP_663029.1 PFAM: NnrS; KEGG: pha:PSHAa2881 integral inner membrane permease YP_663030.1 KEGG: pha:PSHAa2882 hypothetical protein ; membrane protein YP_663031.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon YP_663032.1 PFAM: beta-lactamase-like; KEGG: dar:Daro_2878 beta-lactamase-like YP_663033.1 KEGG: hch:HCH_03096 FOG: PAS/PAC domain; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer PAS fold-3 PAS fold-4 PAS fold; SMART: PAC motif YP_663034.1 catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide YP_663035.1 PFAM: protein kinase protein phosphatase 2C-like; SMART: Tyrosine protein kinase Serine/threonine protein kinase; KEGG: hch:HCH_03181 serine/threonine protein kinase YP_663036.1 PFAM: formate/nitrite transporter; KEGG: tbd:Tbd_1943 putativel formate transporter YP_663037.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_663038.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_663039.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine YP_663040.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: cps:CPS_3514 membrane protein YP_663041.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cps:CPS_0915 glycerophosphoryl diester phosphodiesterase family protein YP_663042.1 KEGG: cps:CPS_0396 hypothetical protein YP_663043.1 KEGG: ppr:PBPRA2469 conserved hypothetical protein YP_663044.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: peptidase M24; KEGG: pha:PSHAb0215 putative metal-dependent dipeptidase YP_663045.1 PFAM: protein of unknown function DUF885; KEGG: pha:PSHAb0132 conserved periplasmic protein of unknown function YP_663046.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: peptidase U62, modulator of DNA gyrase; KEGG: ccr:CC2823 TldD/PmbA family protein YP_663047.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: xcb:XC_0094 TldD protein YP_663048.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: ccr:CC2825 hypothetical protein YP_663049.1 PFAM: ATPase associated with various cellular activities, AAA_3 ATPase associated with various cellular activities, AAA_5; KEGG: xcv:XCV0089 MoxR-like ATPase YP_663050.1 KEGG: xcb:XC_0091 hypothetical protein YP_663051.1 TIGRFAM: conserved hypothetical membrane protein YP_663052.1 KEGG: xcb:XC_0089 hypothetical protein YP_663053.1 KEGG: ccr:CC2830 hypothetical protein YP_663054.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: hch:HCH_01701 multiple antibiotic transporter YP_663055.1 KEGG: vfi:VF1386 acetyltransferase, GNAT family YP_663056.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: cps:CPS_3090 YbaK/EbsC protein YP_663057.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: vvu:VV11553 hypothetical protein YP_663058.1 PFAM: peptidase M24 peptidase M24B, X-Pro dipeptidase/aminopeptidase-like; KEGG: pha:PSHAa0562 proline aminopeptidase P II YP_663059.1 TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: pha:PSHAa0561 hypothetical protein YP_663061.1 PFAM: PfkB; KEGG: hch:HCH_02313 sugar kinase, ribokinase family YP_663062.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: hch:HCH_02314 inosine-uridine nucleoside N-ribohydrolase YP_663063.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: vch:VC2479 hypothetical protein YP_663064.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_663065.1 KEGG: ilo:IL1776 methyl-accepting chemotaxis protein (CHASE3,HAMP,MCP domains) YP_663066.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: pha:PSHAa2744 7,8-dihydro-8-oxoguanine-triphosphatase YP_663067.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_663068.1 PFAM: peptidase M23B; KEGG: cps:CPS_4455 M23/M37 peptidase domain protein YP_663069.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_663070.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase Tubulin/FtsZ-like; KEGG: cps:CPS_4459 cell division protein FtsZ YP_663071.1 PFAM: cell division protein FtsA; KEGG: cps:CPS_4461 cell division protein FtsA YP_663072.1 PFAM: cell division protein FtsQ Polypeptide-transport-associated, FtsQ-type; KEGG: cps:CPS_4462 cell division protein FtsQ YP_663073.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_663074.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_663075.1 KEGG: son:SO4219 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase, family 28 glycosyltransferase 28-like YP_663076.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: cps:CPS_4466 cell division protein FtsW YP_663077.1 TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; KEGG: hin:HI1136 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_663078.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_663079.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase-like cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; KEGG: pha:PSHAa2508 D-alanine:D-alanine-adding enzyme YP_663080.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetases; PFAM: cytoplasmic peptidoglycan synthetase-like cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; KEGG: pmu:PM0137 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_663081.1 PFAM: penicillin-binding protein, transpeptidase Penicillin-binding protein, dimerisation domain; KEGG: cps:CPS_4471 peptidoglycan synthetase FtsI YP_663082.1 PFAM: cell division protein FtsL; KEGG: vvy:VV0607 cell division protein FtsL YP_663083.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: pha:PSHAa2512 S-adenosyl-methyltransferase YP_663084.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_663085.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mll7191 putative oxidoreductase YP_663086.1 PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: ccr:CC0785 2-dehydro-3-deoxygalactonokinase YP_663087.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: pfo:Pfl_3453 senescence marker protein-30 (SMP-30) YP_663088.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: ccr:CC0783 transcriptional regulator, GntR family YP_663089.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: gox:GOX2090 glycerol kinase YP_663090.1 PFAM: Aldose 1-epimerase; KEGG: sco:SCO2407 putative aldose 1-epimerase YP_663091.1 KEGG: pfl:PFL_1898 hypothetical protein YP_663092.1 PFAM: Antibiotic biosynthesis monooxygenase YP_663094.1 PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: pfl:PFL_0173 RNA polymerase sigma-70 factor, ECF subfamily, putative YP_663095.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pha:PSHAa1191 TonB2 protein; iron acquisition via a siderophore-mediated active transport YP_663096.1 KEGG: bfs:BF1809 sialate O-acetylesterase YP_663097.1 KEGG: pfl:PFL_4888 sigma-54 dependent DNA-binding response regulator; TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein sigma-54 factor, interaction region; SMART: ATPase YP_663098.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL response regulator receiver; KEGG: noc:Noc_1271 hybrid signal transduction histidine kinase and diguanylate cyclase/phosphodiesterase YP_663099.1 PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt Two component regulator propeller Two component regulator three Y; KEGG: cps:CPS_0755 GGDEF domain protein YP_663100.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: cps:CPS_0754 alkaline serine protease, subtilase family YP_663101.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL response regulator receiver; KEGG: cps:CPS_3950 response regulator/GGDEF domain protein YP_663102.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4; KEGG: cps:CPS_3952 sensor histidine kinase YP_663103.1 PFAM: response regulator receiver; KEGG: lic:LIC12088 response regulator YP_663104.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: noc:Noc_1703 PAS sensor, signal transduction histidine kinase YP_663105.1 KEGG: pha:PSHAa1740 TonB-dependent receptor YP_663106.1 PFAM: protein of unknown function DUF748; KEGG: son:SO2796 hypothetical protein YP_663107.1 KEGG: son:SO4561 hypothetical protein YP_663108.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: eli:ELI_11905 hypothetical protein YP_663109.1 PFAM: Helix-turn-helix, type 11; KEGG: bmb:BruAb1_1719 hypothetical transcriptional regulator YP_663111.1 KEGG: gox:GOX0247 hypothetical protein YP_663112.1 KEGG: cch:Cag_1238 hypothetical protein YP_663113.1 KEGG: nmu:Nmul_A1721 hypothetical protein YP_663114.1 KEGG: rpb:RPB_3790 hypothetical protein YP_663115.1 PFAM: RDD domain containing protein; KEGG: son:SO1371 hypothetical protein YP_663116.1 PFAM: permease YjgP/YjgQ; KEGG: ilo:IL1946 predicted permease YP_663117.1 PFAM: permease YjgP/YjgQ; KEGG: ilo:IL1947 predicted permease YP_663118.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_663119.1 PFAM: DNA polymerase III chi subunit, HolC; KEGG: plu:plu4482 DNA polymerase III, chi subunit YP_663120.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_663121.1 PFAM: 5'-Nucleotidase-like; KEGG: mag:amb3606 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterase YP_663122.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein histidine kinase, HAMP region; KEGG: mag:amb4000 response regulator containing a CheY-like receiver domain and a GGDEF domain YP_663123.1 KEGG: cps:CPS_0968 hypothetical protein YP_663124.1 KEGG: son:SO4018 hypothetical protein YP_663125.1 PFAM: MltA-interacting MipA; KEGG: son:SO3592 putative outer membrane protein YP_663127.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: cps:CPS_3172 DNA-binding response regulator YP_663128.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: cps:CPS_3170 sensor histidine kinase YP_663129.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: ilo:IL2573 iron-sulfur cluster-binding protein YP_663130.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages YP_663131.1 PFAM: DSBA oxidoreductase; KEGG: cps:CPS_4348 thiol:disulfide interchange protein DsbA YP_663132.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: tdn:Tmden_0836 diguanylate cyclase (GGDEF domain) YP_663133.1 TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; KEGG: vpa:VP0500 uracil-DNA glycosylase YP_663134.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_663135.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_663136.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways YP_663137.1 PFAM: Nucleotidyl transferase; KEGG: son:SO1498 glucose-1-phosphate adenylyltransferase YP_663138.1 PFAM: heat shock protein Hsp20; KEGG: bja:blr7961 probable HspC2 heat shock protein YP_663139.1 PFAM: GAF ATP-binding region, ATPase-like histidine kinase A-like; KEGG: psb:Psyr_3773 GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal YP_663140.1 PFAM: Radical SAM; KEGG: xcb:XC_3736 hypothetical protein YP_663141.1 KEGG: rba:RB3915 putative DNA polymerase related protein YP_663145.1 KEGG: hpy:HP1520 hypothetical protein YP_663146.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_663147.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_663148.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_663149.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pha:PSHAa2477 bacterial regulatory protein YP_663150.1 KEGG: cps:CPS_5029 putative general secretion pathway protein A YP_663151.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III related proteins; KEGG: vvu:VV11043 hemolysin YP_663152.1 KEGG: noc:Noc_0660 hypothetical protein YP_663153.1 PFAM: acriflavin resistance protein; KEGG: hch:HCH_04131 cation/multidrug efflux pump YP_663154.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: hch:HCH_04132 membrane-fusion protein YP_663155.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: hch:HCH_04133 outer membrane protein YP_663156.1 PFAM: Excinuclease ABC, C subunit-like; KEGG: son:SO0145 hypothetical URI domain endonuclease YP_663157.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme YP_663158.1 KEGG: pha:PSHAa2594 hypothetical protein YP_663159.1 TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: cps:CPS_4183 lipid A biosynthesis lauroyl acyltransferase YP_663160.1 KEGG: hch:HCH_00794 FOG: PAS/PAC domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif YP_663161.1 KEGG: pha:PSHAb0423 hypothetical protein YP_663162.1 PFAM: beta-lactamase; KEGG: ccr:CC1568 hypothetical protein YP_663163.1 PFAM: ChaB; KEGG: nmu:Nmul_A2443 ChaB YP_663164.1 PFAM: protein of unknown function DUF808; KEGG: pfo:Pfl_1601 protein of unknown function DUF808 YP_663165.1 PFAM: protein of unknown function DUF610, YibQ; KEGG: son:SO0046 hypothetical protein YP_663166.1 PFAM: peptidase M23B; KEGG: pha:PSHAa0365 protease YP_663167.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_663168.1 PFAM: Rhodanese-like; KEGG: cps:CPS_4390 rhodanese domain protein YP_663169.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: pha:PSHAa0368 glutaredoxin YP_663170.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_663171.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase-like Ketopantoate reductase ApbA/PanE-like; KEGG: pha:PSHAa0370 glycerol-3-phosphate dehydrogenase (NAD+) YP_663172.1 PFAM: YiaAB two helix; KEGG: xoo:XOO4114 membrane protein YP_663173.1 KEGG: hch:HCH_01598 hypothetical protein YP_663175.1 SMART: Helix-turn-helix type 3; KEGG: hch:HCH_00179 protein containing HTH domain YP_663176.1 PFAM: protein of unknown function DUF328; KEGG: vpa:VP0504 hypothetical protein YP_663178.1 KEGG: son:SO3546 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase YP_663179.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_663180.1 KEGG: pha:PSHAb0037 hypothetical protein YP_663181.1 PFAM: secretion protein HlyD; KEGG: pae:PA3360 probable secretion protein YP_663182.1 PFAM: regulatory protein, MarR; KEGG: pha:PSHAb0035 putative transcriptional regulator (MarR family) YP_663183.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_4488 TonB-dependent receptor YP_663184.1 PFAM: aminotransferase, class I and II; KEGG: pca:Pcar_3031 putative aminotransferase YP_663185.1 PFAM: response regulator receiver; KEGG: ppu:PP5324 response regulator YP_663186.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C YP_663187.1 KEGG: bba:Bd3766 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region YP_663188.1 KEGG: son:SO3645 hypothetical protein YP_663189.1 PFAM: Semialdehyde dehydrogenase, NAD - binding oxidoreductase-like; KEGG: hch:HCH_02553 predicted dehydrogenase and related protein YP_663190.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc) YP_663191.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2119 TonB-dependent receptor YP_663193.1 KEGG: rba:RB356 hypothetical protein YP_663194.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2457 TonB-dependent receptor YP_663195.1 KEGG: pha:PSHAa0571 alginate lyase YP_663196.1 KEGG: pha:PSHAa1749 alginate lyase precursor YP_663197.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mta:Moth_0426 short-chain dehydrogenase/reductase SDR YP_663198.1 PFAM: RbsD or FucU transport; KEGG: rba:RB3237 fucose operon fucU protein YP_663199.1 PFAM: natural resistance-associated macrophage protein; KEGG: ssp:SSP2176 putative Mn2+ Fe2+ transporter YP_663200.1 TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: ana:alr3086 gluconokinase YP_663201.1 KEGG: pha:PSHAa0571 alginate lyase YP_663202.1 KEGG: tte:TTE1751 phosphomannose isomerase YP_663203.1 PFAM: natural resistance-associated macrophage protein; KEGG: ssp:SSP2176 putative Mn2+ Fe2+ transporter YP_663204.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate YP_663205.1 PFAM: Mannitol dehydrogenase-like Mannitol dehydrogenase rossman-like; KEGG: xac:XAC4232 mannitol dehydrogenase YP_663206.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3737 TonB-dependent receptor YP_663207.1 PFAM: Heparinase II/III-like; KEGG: pha:PSHAa1748 chondroitin AC/alginate lyase YP_663208.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ilo:IL2587 cation efflux system component YP_663210.1 PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: rba:RB12290 NAD(P) transhydrogenase subunit beta YP_663211.1 KEGG: rba:RB12291 probable NAD(P) transhydrogenase subunit alpha YP_663212.1 PFAM: alanine dehydrogenase/PNT-like; KEGG: rba:RB12292 NAD(P) transhydrogenase subunit alpha YP_663213.1 PFAM: PfkB; KEGG: pha:PSHAa1745 ketodeoxygluconokinase YP_663214.1 PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa1746 putative hexuronate transport protein (MFS family) YP_663215.1 KEGG: pha:PSHAa1749 alginate lyase precursor YP_663216.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: pha:PSHAa1739 regulatory protein, GntR YP_663217.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: atc:AGR_L_3556 hypothetical protein YP_663218.1 PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: bbr:BB2778 putative monooxygenase YP_663219.1 PFAM: protein of unknown function DUF323 Methyltransferase type 11 Methyltransferase type 12; KEGG: son:SO4465 hypothetical protein YP_663220.1 KEGG: cps:CPS_0604 hypothetical protein YP_663221.1 PFAM: Mg2+ transporter protein, CorA-like; KEGG: tcx:Tcr_0935 Mg2+ transporter protein, CorA-like YP_663222.1 TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201 RimK-like ATP-grasp; KEGG: vpa:VPA0173 ribosomal protein S6 modification protein YP_663223.1 PFAM: protein of unknown function DUF785; KEGG: vpa:VPA0172 hypothetical protein YP_663224.1 KEGG: pha:PSHAb0144 conserved protein of unknown function ; putative secreted protein YP_663225.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein response regulator receiver; KEGG: cvi:CV3504 probable two-component response regulator YP_663226.1 PFAM: regulatory protein, TetR; KEGG: vfi:VF1081 transcriptional regulator, TetR family YP_663227.1 PFAM: MscS Mechanosensitive ion channel; KEGG: hch:HCH_00764 small-conductance mechanosensitive channel YP_663228.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: pha:PSHAa0574 alcohol dehydrogenase with dehydroquinate synthase-like domain YP_663229.1 PFAM: helix-turn-helix, AraC type AraC-type transcriptional regulator-like; KEGG: pha:PSHAa0573 transcriptional regulator YP_663230.1 PFAM: glycosyl transferase, family 39; KEGG: son:SO4690 hypothetical protein YP_663231.1 KEGG: mag:amb4206 hypothetical protein YP_663232.1 PFAM: glycosyl transferase, family 2; KEGG: son:SO4688 glycosyl transferase, group 2 family protein YP_663233.1 PFAM: response regulator receiver; KEGG: mac:MA3068 chemotaxis response regulator YP_663234.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: gox:GOX0587 membrane-bound aldehyde dehydrogenase, large subunit YP_663235.1 PFAM: ferredoxin [2Fe-2S]-binding; KEGG: bja:blr0840 putative aldehyde dehydrogenase subunit III YP_663236.1 YghU; B2989; one of eight putative glutathione transferase proteins from E. coli YP_663237.1 PFAM: SapC; KEGG: cps:CPS_0151 hypothetical protein YP_663238.1 PFAM: FAD dependent oxidoreductase; KEGG: pha:PSHAb0547 putative oxygen-dependent membrane associated glycerol-3-phosphate dehydrogenase YP_663239.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: eli:ELI_03520 putative sodium/myo-inositol cotransporter YP_663240.1 KEGG: cps:CPS_0240 hypothetical protein YP_663241.1 PFAM: tryptophan halogenase; KEGG: cps:CPS_0239 putative tryptophan halogenase YP_663242.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0238 TonB-dependent receptor YP_663243.1 PFAM: glycoside hydrolase, clan GH-D; KEGG: eli:ELI_03515 alpha-galactosidase YP_663244.1 PFAM: peptidase M19, renal dipeptidase; KEGG: pha:PSHAa2910 periplasmic dipeptidase YP_663245.1 PFAM: Platelet-activating factor acetylhydrolase, plasma/intracellular isoform II; KEGG: syf:Synpcc7942_0391 hypothetical protein YP_663246.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: cps:CPS_4923 oxidoreductase, 2OG-Fe(II) oxygenase family YP_663247.1 KEGG: dar:Daro_4065 hypothetical protein YP_663248.1 TIGRFAM: Protein of unknown function UPF0011; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ppr:PBPRA3226 putative methyltransferase YP_663249.1 PFAM: LppC putative lipoprotein; KEGG: cps:CPS_4432 conserved hypothetical protein YP_663250.1 PFAM: protein of unknown function UPF0102; KEGG: lpn:lpg2994 predicted endonuclease YP_663251.1 TIGRFAM: phosphoheptose isomerase; KEGG: son:SO0298 phosphoheptose isomerase YP_663252.1 PFAM: transport-associated; KEGG: pha:PSHAa2525 hypothetical protein YP_663253.1 PFAM: Stringent starvation protein B; KEGG: vvy:VV0600 stringent starvation protein B YP_663254.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation YP_663255.1 PFAM: cytochrome c1; KEGG: ilo:IL0418 cytochrome c1 YP_663256.1 PFAM: cytochrome b/b6-like; KEGG: pha:PSHAa2529 ubiquinol-cytochrome c reductase, cytochrome b YP_663257.1 KEGG: ilo:IL0416 ubiquinol-cytochrome C reductase iron-sulfur subunit; TIGRFAM: Twin-arginine translocation pathway signal ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] region YP_663258.1 PFAM: ribosomal protein S9; KEGG: son:SO3939 ribosomal protein S9 YP_663259.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_663260.1 PFAM: CBS domain containing protein; KEGG: cps:CPS_1349 CBS domain protein YP_663262.1 TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: hch:HCH_01808 predicted pyrophosphatase YP_663263.1 KEGG: son:SO3455 GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT TGS RelA/SpoT YP_663264.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_663265.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_663266.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: vch:VC2459 DNA repair protein RecO YP_663267.1 KEGG: vfi:VF0709 hypothetical protein YP_663268.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ-like phosphoesterase, DHHA1; KEGG: ssn:SSO_3045 ssDNA exonuclease YP_663269.1 KEGG: son:SO0951 thiol:disulfide interchange protein DsbC YP_663270.1 TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase phage integrase-like SAM-like; KEGG: pha:PSHAa0514 site-specific tyrosine recombinase XerD YP_663271.1 KEGG: ilo:IL0757 uncharacterized conserved protein containing predicted Zn-ribbon like domain YP_663272.1 KEGG: pha:PSHAa2602 twitching motility protein PilU (type IV pili); TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: ATPase YP_663273.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: cps:CPS_3662 twitching motility protein PilT YP_663274.1 TIGRFAM: Protein of unknown function UPF0001; PFAM: alanine racemase-like; KEGG: son:SO3352 conserved hypothetical protein TIGR00044 YP_663275.1 KEGG: ppr:PBPRA3144 putative pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent NAD-dependent glycerol-3-phosphate dehydrogenase-like YP_663276.1 PFAM: protein of unknown function YGGT; KEGG: son:SO3355 hypothetical protein YP_663277.1 KEGG: cps:CPS_3666 hypothetical protein YP_663278.1 KEGG: rba:RB2547 signal peptide prediction YP_663279.1 PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: vvy:VVA1472 sensory box sensor histidine kinase/response regulator YP_663280.1 PFAM: helix-turn-helix, AraC type; KEGG: eca:ECA0101 xylose operon regulatory protein YP_663281.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: yps:YPTB3892 xylulose kinase YP_663282.1 catalyzes the interconversion of D-xylose to D-xylulose YP_663283.1 TIGRFAM: sugar transporter; PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: xac:XAC1777 MFS transporter YP_663284.1 PFAM: glycoside hydrolase, family 43; KEGG: xcb:XC_4214 xylosidase/arabinosidase YP_663285.1 PFAM: NUDIX hydrolase; KEGG: bth:BT0354 hypothetical protein YP_663286.1 PFAM: glycoside hydrolase, family 3-like; KEGG: ccr:CC3054 xylosidase/arabinosidase YP_663287.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rru:Rru_A0201 endonuclease/exonuclease/phosphatase YP_663288.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: noc:Noc_1912 phospholipase D/transphosphatidylase YP_663289.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: cps:CPS_0718 cold-shock DNA-binding domain family protein YP_663290.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: hch:HCH_01604 peroxiredoxin YP_663291.1 PFAM: dihydrofolate reductase region; KEGG: cps:CPS_4505 dihydrofolate reductase YP_663292.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_663293.1 involved in the peptidyltransferase reaction during translation YP_663294.1 PFAM: ribosomal protein L21; KEGG: pmu:PM0347 50S ribosomal protein L21 YP_663295.1 PFAM: Polyprenyl synthetase; KEGG: ilo:IL0474 geranylgeranyl pyrophosphate synthase YP_663296.1 KEGG: pha:PSHAa2436 hypothetical protein YP_663297.1 KEGG: pha:PSHAa2437 hypothetical protein YP_663298.1 PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: cps:CPS_4364 RNA polymerase sigma-70 factor, ECF subfamily YP_663299.1 PFAM: MOSC domain containing protein; KEGG: dar:Daro_0036 MOSC YP_663300.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_663301.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_663302.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_663303.1 sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA YP_663304.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate YP_663305.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_663306.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: cps:CPS_1431 alcohol dehydrogenase, iron-containing YP_663307.1 PFAM: DSBA oxidoreductase; KEGG: psp:PSPPH_3908 2-hydroxychromene-2-carboxylate isomerase family protein YP_663308.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_663309.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_663310.1 KEGG: lpp:lpp2401 hypothetical protein YP_663311.1 PFAM: transposase, IS111A/IS1328/IS1533 transposase IS116/IS110/IS902; KEGG: cps:CPS_2742 ISCps7, transposase YP_663312.1 KEGG: pha:PSHAa1585 hypothetical protein YP_663313.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: ret:RHE_PF00156 putative zinc-dependent alcohol dehydrogenase protein YP_663314.1 PFAM: aldehyde dehydrogenase; KEGG: eba:ebA3161 P-hydroxybenzaldehyde dehydrogenase YP_663315.1 PFAM: Antibiotic biosynthesis monooxygenase YP_663316.1 PFAM: alpha-acetolactate decarboxylase; KEGG: mma:MM0639 alpha-acetolactate decarboxylase YP_663317.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: nmu:Nmul_A1473 zinc-containing alcohol dehydrogenase superfamily YP_663318.1 PFAM: plasmid maintenance system killer; KEGG: ilo:IL2055 RelE/ParE family protein, cytotoxic translational repressor of toxin-antitoxin stability system YP_663319.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix motif; KEGG: noc:Noc_0437 plasmid maintenance system antidote protein YP_663323.1 PFAM: transcriptional regulatory protein-like; KEGG: ilo:IL1819 N-terminal winged-HTH domain fused to TolB-like domain YP_663324.1 PFAM: beta-lactamase; KEGG: bat:BAS2564 hypothetical protein YP_663325.1 PFAM: regulatory protein, TetR; KEGG: nfa:nfa35010 putative transcriptional regulator YP_663326.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: nfa:nfa35020 hypothetical protein YP_663327.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: ccr:CC1518 ABC transporter, ATP-binding protein YP_663328.1 KEGG: ccr:CC1519 hypothetical protein YP_663329.1 KEGG: ccr:CC1520 hypothetical protein YP_663330.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa1584 TonB-dependent receptor for ferrichrome transport YP_663331.1 PFAM: peptidase M24; KEGG: pha:PSHAb0215 putative metal-dependent dipeptidase YP_663332.1 PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: pha:PSHAa1381 transcriptional regulator YP_663333.1 PFAM: beta-ketoacyl synthase; KEGG: pae:PA5174 probable beta-ketoacyl synthase YP_663334.1 PFAM: lipolytic enzyme, G-D-S-L; KEGG: rba:RB973 mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase) YP_663335.1 KEGG: rba:RB3005 hypothetical protein YP_663337.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: rpb:RPB_1146 acyl-CoA dehydrogenase-like YP_663338.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pha:PSHAa2980 cold shock-like protein CspE, RNA chaperone, transcription antiterminator, affects expression of RpoS and UspA YP_663339.1 KEGG: pha:PSHAa2981 cold-shock RNAse R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases ribonuclease R; PFAM: ribonuclease II Ribonuclease B, OB region-like; SMART: Cold shock protein YP_663340.1 KEGG: bbr:BB3073 putative integral membrane protein YP_663342.1 PFAM: protein of unknown function DUF465; KEGG: cps:CPS_0008 hypothetical protein YP_663343.1 KEGG: cps:CPS_0942 putative lipoprotein YP_663344.1 KEGG: vch:VCA0893 hypothetical protein YP_663345.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: dar:Daro_2807 acetyl-CoA hydrolase/transferase YP_663346.1 KEGG: ppr:PBPRA1285 hypothetical protein YP_663347.1 forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate YP_663349.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: nar:Saro_2541 TonB-dependent receptor YP_663350.1 PFAM: TPR repeat Sel1-like repeat Tetratricopeptide TPR_3 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: noc:Noc_0166 TPR repeat protein YP_663351.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: vpa:VPA0609 hypothetical protein YP_663352.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: yps:YPTB0493 probable outer membrane multidrug efflux lipoprotein, OMF family YP_663353.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: yps:YPTB0492 multidrug efflux protein, RND family YP_663354.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: gsu:GSU2697 multidrug resistance protein YP_663355.1 KEGG: pfl:PFL_0986 PepSY-associated membrane protein YP_663357.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: son:SO1482 TonB-dependent receptor, putative YP_663358.1 KEGG: cps:CPS_2861 hypothetical protein YP_663359.1 KEGG: cps:CPS_2797 hypothetical protein YP_663361.1 PFAM: phage integrase; KEGG: neu:NE0588 phage integrase:chain length determinant protein YP_663362.1 KEGG: neu:NE0588 phage integrase:chain length determinant protein YP_663363.1 PFAM: FAD dependent oxidoreductase; KEGG: sco:SCO6740 D-amino acid oxidase YP_663364.1 PFAM: alpha/beta hydrolase fold; KEGG: pae:PA3301 hypothetical protein YP_663365.1 PFAM: AMP-dependent synthetase and ligase; KEGG: cps:CPS_0675 AMP-binding protein YP_663366.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: nar:Saro_1897 enoyl-CoA hydratase/isomerase YP_663367.1 KEGG: sil:SPOA0348 hypothetical protein YP_663368.1 PFAM: Hydantoinase/oxoprolinase Hydantoinase B/oxoprolinase Hydantoinaseoxoprolinase-like; KEGG: ret:RHE_PE00300 probable N-methylhydantoinase (ATP-hydrolyzing)/5-oxoprolinase protein YP_663369.1 PFAM: natural resistance-associated macrophage protein; KEGG: ilo:IL2296 Mn2+/Fe2+ transporter, NRAMP family YP_663370.1 KEGG: tcx:Tcr_0556 hypothetical protein YP_663371.1 PFAM: tryptophan halogenase; KEGG: cps:CPS_0992 putative tryptophan halogenase YP_663372.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0993 TonB-dependent receptor YP_663373.1 PFAM: major facilitator superfamily MFS_1; KEGG: ccr:CC1133 transporter, putative YP_663374.1 PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: noc:Noc_0218 alpha amylase, catalytic region YP_663375.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein, LacI; KEGG: hch:HCH_04796 transcriptional regulator YP_663376.1 TIGRFAM: sugar transporter; PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: rba:RB10309 xylose transporter YP_663377.1 KEGG: bsu:BG10320 levanase; PFAM: Glycosyl hydrolases family 32, N terminal Glycosyl hydrolase family 32-like; SMART: Glycoside hydrolase, family 32 YP_663378.1 PFAM: glutathione S-transferase-like; KEGG: pfo:Pfl_5490 glutathione S-transferase-like YP_663379.1 KEGG: ilo:IL1293 Zn-ribbon protein YP_663381.1 KEGG: cps:CPS_4478 hypothetical protein YP_663383.1 PFAM: PhoH-like protein; SMART: ATPase Nucleotide binding protein, PINc; KEGG: cps:CPS_4518 PhoH family protein YP_663384.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA YP_663385.1 PFAM: pseudouridine synthase; KEGG: pha:PSHAa2627 pseudouridylate synthase for 23S rRNA (position 746) and tRNAphe(position 32), dual specificity YP_663386.1 KEGG: pha:PSHAa2628 hypothetical protein YP_663387.1 KEGG: son:SO3813 hypothetical protein YP_663388.1 PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_0706 putative AmpG protein YP_663389.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: pha:PSHAa1211 sensory box/GGDEF protein YP_663390.1 PFAM: response regulator receiver; KEGG: ilo:IL0510 chemotaxis response regulator YP_663391.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_663392.1 KEGG: vfi:VFA0707 transporter, drug/metabolite exporter family YP_663393.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: cps:CPS_0698 long-chain fatty acid transport protein YP_663394.1 PFAM: Abortive infection protein; KEGG: ava:Ava_C0052 abortive infection protein YP_663395.1 PFAM: Ferritin and Dps; KEGG: tcx:Tcr_1226 ferritin and Dps YP_663396.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pfo:Pfl_1187 short-chain dehydrogenase/reductase SDR YP_663397.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_663398.1 PFAM: protein of unknown function DUF81; KEGG: ppr:PBPRA0579 conserved hypothetical protein YP_663399.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme GAF PEP-utilising enzyme, mobile region PEP-utilising enzyme-like; KEGG: cps:CPS_3624 phosphoenolpyruvate-protein phosphotransferase PtsP YP_663400.1 hydrolyzes diadenosine polyphosphate YP_663401.1 PFAM: YhhN-like; KEGG: lpp:lpp1972 hypothetical protein YP_663402.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair YP_663403.1 PFAM: aldehyde dehydrogenase; KEGG: bte:BTH_II0498 aldehyde dehydrogenase YP_663404.1 catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis YP_663405.1 PFAM: adenylate cyclase; KEGG: ppr:PBPRA0445 conserved hypothetical protein YP_663406.1 PFAM: SH3, type 3; SMART: SH3-like region; KEGG: vvy:VV0573 SH3 domain protein YP_663407.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dra:DR1999 hypothetical protein YP_663408.1 KEGG: cps:CPS_4101 hypothetical protein YP_663409.1 KEGG: ilo:IL2158 hypothetical protein YP_663410.1 PFAM: Septum formation initiator; KEGG: cps:CPS_1071 septum formation initiator family protein YP_663411.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: stt:t2831 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_663412.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_663413.1 PFAM: tRNA pseudouridine synthase D, TruD; KEGG: son:SO3436 tRNA pseudouridine synthase D YP_663414.1 KEGG: pha:PSHAa0687 acid phosphatase SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE YP_663415.1 KEGG: cps:CPS_1076 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_663416.1 PFAM: protein of unknown function DUF368; KEGG: hch:HCH_01875 predicted membrane protein YP_663417.1 PFAM: Peptidoglycan-binding LysM peptidase M23B; KEGG: cps:CPS_1078 putative lipoprotein NlpD YP_663418.1 TIGRFAM: RNA polymerase sigma factor RpoS; PFAM: sigma-70 region 3 sigma-70 region 2 sigma-70 region 4 sigma-70 region 1.2; KEGG: ppr:PBPRA3071 putative RNA polymerase sigma-38 factor YP_663419.1 PFAM: Late embryogenesis abundant protein; KEGG: cel:K08H10.1 Hypothetical protein K08H10.1 YP_663420.1 KEGG: nmu:Nmul_A0564 possible transmembrane protein YP_663421.1 PFAM: SEC-C motif; KEGG: vfi:VF1407 hypothetical protein YP_663422.1 PFAM: PHP-like; SMART: Phosphoesterase PHP-like; KEGG: ppr:PBPRB2022 conserved hypothetical protein YP_663423.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: psp:PSPPH_1477 cytosine deaminase YP_663425.1 PFAM: helix-turn-helix motif; KEGG: tko:TK1339 predicted transcription regulator, containing DNA-binding HTH domain YP_663426.1 PFAM: GCN5-related N-acetyltransferase Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: hch:HCH_04040 predicted amidohydrolase YP_663427.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis YP_663428.1 PFAM: beta-lactamase; KEGG: cps:CPS_1414 putative beta-lactamase YP_663429.1 PFAM: helix-turn-helix, AraC type Ada, metal-binding AlkA-like; KEGG: vpa:VPA0045 ada regulatory protein YP_663430.1 KEGG: vvu:VV21209 methylated DNA-protein cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase YP_663431.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: rso:RSc2507 probable transmembrane protein YP_663432.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: son:SO4457 GGDEF domain protein YP_663433.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat Nucleotidyl transferase; KEGG: pha:PSHAa3006 bifunctional: N-acetyl glucosamine-1-phosphate uridyltransferase (N-terminal); glucosamine-1-phosphate acetyl transferase (C-terminal) YP_663434.1 PFAM: regulatory protein, DeoR Helix-turn-helix, type 11; KEGG: son:SO4742 transcriptional regulator, DeoR family YP_663435.1 TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase, class-II sugar isomerase (SIS); KEGG: ilo:IL2616 glucosamine-fructose-6-phosphate aminotransferase YP_663436.1 PFAM: phosphate-selective porin O and P; KEGG: xcb:XC_1529 polyphosphate-selective porin O YP_663437.1 PFAM: aldo/keto reductase; KEGG: mag:amb0256 predicted oxidoreductase YP_663438.1 PFAM: oxidoreductase-like; KEGG: rpa:RPA4703 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase YP_663439.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway YP_663440.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway YP_663441.1 PFAM: amidohydrolase 2; KEGG: rpb:RPB_0874 amidohydrolase 2 YP_663442.1 PFAM: amidohydrolase 2; KEGG: xcb:XC_4121 4-oxalomesaconate hydratase YP_663443.1 PFAM: protein of unknown function DUF453; KEGG: ppu:PP2513 hypothetical protein YP_663444.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: ppu:PP2514 hypothetical protein YP_663445.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: xoo:XOO4566 transcriptional regulator YP_663446.1 PFAM: helix-turn-helix, AraC type AraC protein, arabinose-binding/dimerisation; KEGG: bja:bll3668 transcriptional regulatory protein YP_663447.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate YP_663449.1 PFAM: aldehyde dehydrogenase; KEGG: gme:Gmet_2131 aldehyde dehydrogenase YP_663451.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: bur:Bcep18194_C7575 transcriptional regulator, LysR family YP_663452.1 PFAM: sigma-54 factor, interaction region helix-turn-helix, Fis-type 4-vinyl reductase, 4VR Activator of aromatic catabolism; SMART: ATPase; KEGG: reu:Reut_B5673 helix-turn-helix, fis-type YP_663453.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: ccr:CC2396 benzyl-alcohol dehydrogenase YP_663454.1 KEGG: stt:t1449 hypothetical protein YP_663455.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: aci:ACIAD1534 putative TonB-dependent receptor protein (outer membrane salicin receptor) YP_663456.1 PFAM: beta-lactamase-like; KEGG: ctc:CTC00902 putative hydrolase YP_663457.1 PFAM: sulfatase type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: cps:CPS_2368 putative N-acetylglucosamine-6-sulfatase YP_663458.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2138 TonB-dependent receptor YP_663459.1 PFAM: regulatory protein, TetR; KEGG: cps:CPS_4876 transcriptional regulator, TetR family YP_663460.1 PFAM: beta-lactamase-like; KEGG: ctc:CTC00902 putative hydrolase YP_663461.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: FAD linked oxidase-like; KEGG: yps:YPTB1469 putative oxidoreductase YP_663462.1 PFAM: cytochrome c, class I; KEGG: hch:HCH_04415 cytochrome c553 YP_663464.1 KEGG: cps:CPS_1881 hypothetical protein YP_663465.1 PFAM: PaaX-like-like; KEGG: bpm:BURPS1710b_0283 putative phenylacetic acid degradation operon negative regulatory protein YP_663466.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: pae:PA3972 probable acyl-CoA dehydrogenase YP_663467.1 KEGG: son:SO2794 hypothetical protein YP_663468.1 TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: noc:Noc_0226 PAS sensor diguanylate cyclase and phophodiesterase YP_663469.1 PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: vch:VC1349 sensory box sensor histidine kinase/response regulator YP_663470.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pha:PSHAa1468 transcriptional activator protein, LysR YP_663471.1 PFAM: beta-lactamase-like; KEGG: vpa:VPA0171 hypothetical protein YP_663472.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog YP_663473.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: pha:PSHAa0627 sensor histidine kinase YP_663474.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: cps:CPS_3982 DNA-binding response regulator YP_663475.1 PFAM: OmpA/MotB; KEGG: ppr:PBPRB0759 hypothetical OmpA family protein YP_663476.1 PFAM: von Willebrand factor, type A Vault protein inter-alpha-trypsin; SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: ret:RHE_CH03000 hypothetical protein YP_663477.1 TIGRFAM: sortase family protein; PFAM: peptidase C60, sortase A and B; KEGG: son:SO2196 LPXTG-site transpeptidase family protein YP_663479.1 PFAM: putative esterase; KEGG: ilo:IL2088 predicted hydrolase of the alpha/beta superfamily YP_663480.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: rba:RB8432 probable fusion protein YP_663481.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: son:SO3802 ABC transporter, ATP-binding protein YP_663482.1 PFAM: ABC-2 type transporter; KEGG: pha:PSHAa2296 ABC-type transport system, permease component YP_663483.1 PFAM: putative methyltransferase; KEGG: pha:PSHAa2295 methyltransferase SAM dependent YP_663484.1 PFAM: EAL; KEGG: pha:PSHAa2294 hypothetical protein YP_663485.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: cps:CPS_1007 putative decarboxylase YP_663486.1 KEGG: son:SO0869 pantoate--beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase cytidyltransferase-related domain; PFAM: Pantoate-beta-alanine ligase YP_663487.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_663488.1 KEGG: vvy:VV2762 7;8-dihydro-6-hydroxymethylpterin- pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YP_663489.1 TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: eca:ECA3319 poly(A) polymerase YP_663490.1 PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: vvy:VV2760 glutamyl-tRNA synthetase YP_663491.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: ilo:IL2250 DnaK YP_663492.1 PFAM: sugar fermentation stimulation protein; KEGG: sgl:SG0493 sugar fermentation stimulation protein YP_663493.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide YP_663495.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: son:SO0129 conserved hypothetical protein TIGR00427 YP_663496.1 PFAM: protein of unknown function DUF416; KEGG: cps:CPS_0153 hypothetical protein YP_663497.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: pha:PSHAa0353 enzyme with N-6 adenine-specific DNA methylase domain YP_663498.1 KEGG: sbo:SBO_3461 cell division membrane protein; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G-domain; SMART: ATPase YP_663499.1 KEGG: ilo:IL0227 FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: ATPase YP_663500.1 PFAM: protein of unknown function DUF214; KEGG: pha:PSHAa0356 cell division protein YP_663501.1 PFAM: EAL; KEGG: cps:CPS_3464 EAL domain protein YP_663502.1 TIGRFAM: RNA polymerase sigma factor RpoH; PFAM: sigma-70 region 2 sigma-70 region 4; KEGG: cps:CPS_0161 RNA polymerase sigma-32 factor YP_663503.1 TIGRFAM: thioesterase domain, putative; PFAM: GCN5-related N-acetyltransferase; KEGG: ilo:IL2449 acetyltransferase, GNAT family fused to PaaI related uncharacterized conserved domain YP_663504.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_663505.1 KEGG: pfo:Pfl_0371 peptidase S33, proline iminopeptidase 1; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold YP_663506.1 KEGG: pha:PSHAa0123 hypothetical protein YP_663507.1 KEGG: son:SO4403 hypothetical protein YP_663508.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease YP_663509.1 KEGG: hin:HI1444 510 methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_663510.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis YP_663511.1 PFAM: glutathione S-transferase-like; KEGG: bur:Bcep18194_B2249 glutathione S-transferase-like YP_663512.1 PFAM: cytochrome c, class I; KEGG: cps:CPS_0313 cytochrome c552 YP_663513.1 PFAM: protein of unknown function UPF0061; KEGG: vpa:VP0909 hypothetical protein YP_663514.1 TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: hch:HCH_05755 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain YP_663515.1 PFAM: GTP cyclohydrolase II; KEGG: vpa:VPA0006 GTP cyclohydrolase II YP_663516.1 KEGG: son:SO4649 hypothetical protein YP_663518.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: pca:Pcar_1018 peptidylarginine deiminase-related protein YP_663519.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bfs:BF2465 putative hydrolase YP_663520.1 catalyzes the formation of 2-oxobutanoate from L-threonine YP_663521.1 PFAM: protein of unknown function DUF1696; KEGG: son:SO3796 hypothetical protein YP_663522.1 PFAM: peptidase S15 peptidase S9, prolyl oligopeptidase active site region peptidase S9B, dipeptidylpeptidase IV-like; KEGG: pha:PSHAa2386 dipeptidyl peptidase IV YP_663523.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: gka:GK0979 semialdehyde dehydrogenase YP_663524.1 PFAM: methyltransferase small Methyltransferase type 12; KEGG: bth:BT0838 putative RNA methyltransferase YP_663526.1 TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding Domain of unknown function DUF1730; KEGG: pha:PSHAa2485 4Fe-4S ferredoxin YP_663527.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031 YjeF-related protein-like; KEGG: ppr:PBPRA3355 hypothetical protein YP_663528.1 PFAM: protein of unknown function UPF0079; KEGG: ppr:PBPRA3354 putative nucleotide-binding protein YP_663529.1 PFAM: Peptidoglycan-binding LysM cell wall hydrolase/autolysin; KEGG: pha:PSHAa0268 N-acetylmuramoyl-L-alanine amidase II YP_663530.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region, ATPase-like DNA mismatch repair protein-like; KEGG: vvy:VV3073 DNA mismatch repair enzyme YP_663531.1 KEGG: son:SO0602 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_663532.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: eca:ECA3934 putative phage-related protein (host factor-I protein) YP_663533.1 PFAM: GTP-binding protein, HSR1-related; KEGG: vpa:VP2816 GTP-binding protein HflX YP_663534.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: pha:PSHAa0273 hypothetical protein YP_663535.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: pha:PSHAa0274 hypothetical protein YP_663536.1 KEGG: pha:PSHAa1486 hypothetical protein YP_663537.1 PFAM: glutathione S-transferase-like; KEGG: hch:HCH_06415 glutathione S-transferase YP_663538.1 PFAM: glutathione S-transferase-like; KEGG: hch:HCH_06414 glutathione S-transferase YP_663539.1 PFAM: extracellular solute-binding protein, family 1; KEGG: hch:HCH_00071 ABC-type sugar transport system, periplasmic component YP_663540.1 KEGG: rba:RB9087 hypothetical protein-transmembrane prediction YP_663541.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_663542.1 PFAM: C4-dicarboxylate anaerobic carrier AbgT putative transporter; KEGG: pha:PSHAa0700 p-aminobenzoyl-glutamate transport protein (AbgT) YP_663543.1 KEGG: ana:all3032 hypothetical protein YP_663544.1 PFAM: OmpA/MotB; KEGG: ana:all3031 OmpA-OmpF porin, OOP family YP_663545.1 KEGG: ana:all3030 similar to Ras family protein; TIGRFAM: small GTP-binding protein; PFAM: Miro-like Ras; SMART: Ras small GTPase, Ras type Ras small GTPase, Rab type YP_663546.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: psb:Psyr_4770 PAS:GGDEF YP_663547.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: ilo:IL0178 glutaryl-CoA dehydrogenase YP_663548.1 PFAM: aldo/keto reductase; KEGG: vfi:VFA0836 Tas protein YP_663550.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_663551.1 TIGRFAM: putative transcriptional activator, Baf family; KEGG: aci:ACIAD0840 putative transcriptional regulator YP_663552.1 KEGG: vpa:VP2931 BirA bifunctional protein; TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase-like biotin/lipoate A/B protein ligase Helix-turn-helix, type 11 YP_663553.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_663554.1 PFAM: lipopolysaccharide biosynthesis; KEGG: vch:VC0937 exopolysaccharide biosynthesis protein, putative YP_663555.1 PFAM: polysaccharide export protein; KEGG: hch:HCH_04680 periplasmic protein involved in polysaccharide export YP_663556.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: plu:plu4809 WblM protein YP_663557.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: nma:NMA0638 pilin glycosylation protein YP_663558.1 KEGG: dps:DP0029 pilin glycosylation protein YP_663559.1 PFAM: sugar transferase; KEGG: eli:ELI_13365 putative UDP-galactose phosphate transferase YP_663560.1 PFAM: glycosyl transferase, group 1; KEGG: bja:bll3648 probable glycosyl transferase YP_663561.1 PFAM: glycosyl transferase, group 1; KEGG: pca:Pcar_1798 glycosyltransferase-like YP_663563.1 PFAM: glycosyl transferase, group 1; KEGG: fra:Francci3_1310 glycosyl transferase, group 1 YP_663564.1 KEGG: cef:CE0378 hypothetical protein YP_663566.1 PFAM: carbonic anhydrase; KEGG: psb:Psyr_0288 carbonate dehydratase YP_663567.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: eli:ELI_02280 hydrogen peroxide-inducible genes activator protein YP_663568.1 PFAM: RNA-binding region RNP-1 (RNA recognition motif); KEGG: pha:PSHAa0253 hypothetical protein YP_663569.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_663570.1 PFAM: protein of unknown function DUF833; KEGG: gsu:GSU0792 hypothetical protein YP_663571.1 PFAM: Forkhead-associated; KEGG: cps:CPS_0481 FHA domain protein YP_663572.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: cps:CPS_0482 serine protease YP_663573.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: ilo:IL2144 acyltransferase family protein YP_663574.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: bbr:BB1977 hypothetical protein YP_663575.1 PFAM: OsmC-like protein; KEGG: neu:NE1136 putative redox protein YP_663576.1 KEGG: bth:BT2505 hypothetical protein YP_663577.1 PFAM: aminotransferase, class IV; KEGG: noc:Noc_2631 D-alanine transaminase YP_663578.1 KEGG: pae:PA4930 biosynthetic alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase-like YP_663579.1 TIGRFAM: putative methyltransferase; PFAM: methyltransferase, putative Methyltransferase type 11 Methyltransferase type 12; KEGG: pha:PSHAa1946 methyltransferase with S-adenosyl-L-methionine-dependent methyltransferase domain YP_663580.1 TIGRFAM: putative methyltransferase; PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: pha:PSHAa1945 methyltransferase with S-adenosyl-L-methionine-dependent methyltransferase domain YP_663581.1 PFAM: regulatory protein, LuxR response regulator receiver Bacterio-opsin activator, HTH Sigma-70, region 4 type 2; KEGG: pha:PSHAa0699 regulator in two-component regulatory system ; LuxR YP_663582.1 KEGG: pha:PSHAa0251 hypothetical protein YP_663583.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs YP_663584.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis YP_663585.1 PFAM: fatty acid desaturase; KEGG: ppr:PBPRB0742 hypothetical putative delta-9 fatty acid desaturase YP_663587.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: vvy:VV3149 uracil-DNA glycosylase YP_663588.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL response regulator receiver; KEGG: cps:CPS_0394 response regulator/GGDEF/EAL domain protein YP_663589.1 KEGG: cps:CPS_0395 hypothetical protein YP_663590.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: vch:VC0386 phosphoadenosine phosphosulfate reductase YP_663591.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide YP_663592.1 TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: oxidoreductase FAD/NAD(P)-binding FAD-binding flavodoxin/nitric oxide synthase; KEGG: cps:CPS_4759 sulfite reductase (NADPH) flavoprotein alpha-component YP_663593.1 KEGG: pha:PSHAa0505 hypothetical protein YP_663594.1 KEGG: pha:PSHAa0504 hypothetical protein YP_663595.1 PFAM: protein of unknown function DUF461; KEGG: tcx:Tcr_1566 protein of unknown function DUF461 YP_663596.1 KEGG: cps:CPS_4753 hypothetical protein YP_663597.1 PFAM: PspA/IM30; KEGG: son:SO1807 phage shock protein A YP_663598.1 KEGG: hhe:HH0093 hypothetical protein YP_663599.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: rsp:RSP_3062 3-oxoacyl-(acyl-carrier-protein) reductase YP_663600.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rsp:RSP_3063 AMP-dependent synthetase and ligase YP_663601.1 KEGG: dvu:DVUA0053 hypothetical protein YP_663604.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: vpa:VP2727 NifR3/Smm1 family protein YP_663605.1 KEGG: pha:PSHAb0186 hypothetical protein YP_663606.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: ava:Ava_1669 pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_663607.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: hch:HCH_05505 restriction endonuclease YP_663608.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0348 acyltransferase family protein YP_663609.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: vch:VC0033 hypothetical protein YP_663610.1 PFAM: MscS Mechanosensitive ion channel; KEGG: bfs:BF0722 putative transmembrane transport protein YP_663611.1 KEGG: cps:CPS_1542 hypothetical protein YP_663612.1 PFAM: NAD-dependent epimerase/dehydratase dTDP-4-dehydrorhamnose reductase; KEGG: ppr:PBPRA2429 hypothetical enzyme of sugar metabolism YP_663613.1 PFAM: sodium:neurotransmitter symporter; KEGG: pha:PSHAa1286 sodium-dependent transporter YP_663614.1 KEGG: cps:CPS_0516 oxidoreductase, short-chain dehydrogenase/reductase family YP_663615.1 PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: ilo:IL2053 potential redox protein YP_663616.1 KEGG: cps:CPS_4817 peptide methionine sulfoxide reductase MsrA; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A YP_663618.1 PFAM: glycoside hydrolase, family 42, domain 5, loop region glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, TIM barrel glycoside hydrolase family 2, sugar binding; KEGG: tma:TM1193 beta-galactosidase YP_663620.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic YP_663621.1 KEGG: pha:PSHAa1320 hypothetical protein YP_663622.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: son:SO1827 TonB system transport protein ExbD2 YP_663623.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_663624.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: vch:VC2488 hypothetical protein YP_663625.1 TIGRFAM: conserved hypothetical protein; KEGG: vch:VC2487 hypothetical protein YP_663626.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pha:PSHAa0093 diaminopimelate decarboxylase YP_663627.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_663628.1 PFAM: protein of unknown function DUF484; KEGG: ilo:IL2554 uncharacterized conserved protein, YigA-like YP_663629.1 PFAM: phage integrase phage integrase-like SAM-like; KEGG: ppr:PBPRA3520 putative integrase/recombinase XerC YP_663630.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: vpa:VP2980 hypothetical protein YP_663631.1 KEGG: pha:PSHAa0645 serine acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat serine acetyltransferase-like YP_663632.1 TIGRFAM: DNA helicase II; PFAM: UvrD/REP helicase; KEGG: sec:SC3850 DNA-dependent ATPase I and helicase II YP_663633.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein response regulator receiver; KEGG: hch:HCH_06018 response regulator containing a CheY-like receiver domain and a GGDEF domain YP_663634.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: ilo:IL2549 conserved membrane protein RarD YP_663636.1 KEGG: pha:PSHAa0583 hypothetical protein YP_663637.1 PFAM: formate/nitrite transporter; KEGG: par:Psyc_1851 formate/nitrite transporter family (FNT) YP_663638.1 KEGG: pfo:Pfl_1447 hypothetical protein YP_663639.1 PFAM: Hemerythrin HHE cation binding region; KEGG: vpa:VP0084 hypothetical protein YP_663640.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: vfi:VFA0032 thioredoxin peroxidase YP_663641.1 PFAM: Dual specificity protein phosphatase diacylglycerol kinase, catalytic region; SMART: Protein tyrosine phosphatase, catalytic region; KEGG: vpa:VP0085 methylglyoxal synthase YP_663642.1 KEGG: ccr:CC1285 hypothetical protein YP_663643.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pha:PSHAa2557 mechanosensitive channel protein YP_663644.1 TIGRFAM: conserved hypothetical protein; KEGG: pha:PSHAa1823 hypothetical protein YP_663647.1 PFAM: conserved hypothetical protein; KEGG: cps:CPS_3577 GGDEF domain protein YP_663648.1 KEGG: pha:PSHAa1701 hypothetical protein YP_663649.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: eba:ebA6339 modification methylase (cytosine-specific methyltransferase YP_663650.1 KEGG: hpj:jhp1287 rod shape-determining protein YP_663652.1 PFAM: NERD; KEGG: mca:MCA0729 hypothetical protein YP_663653.1 KEGG: hch:HCH_05713 hypothetical protein YP_663654.1 PFAM: helicase-like; KEGG: sth:STH1306 putative DNA helicase YP_663655.1 KEGG: neu:NE0093 ATP-dependent DNA helicase YP_663656.1 PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: vpa:VP0880 hypothetical protein YP_663658.1 PFAM: protein of unknown function DUF81; KEGG: pha:PSHAa2083 hypothetical protein ; membrane protein YP_663659.1 KEGG: hch:HCH_06070 hypothetical protein YP_663660.1 KEGG: vch:VC2455 hypothetical protein YP_663661.1 KEGG: hch:HCH_06070 hypothetical protein YP_663662.1 KEGG: eba:ebB54 hypothetical protein YP_663663.1 KEGG: hch:HCH_06070 hypothetical protein YP_663664.1 KEGG: vvy:VV2825 hypothetical protein YP_663665.1 KEGG: hch:HCH_06070 hypothetical protein YP_663666.1 KEGG: eba:ebB54 hypothetical protein YP_663667.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: gsu:GSU2016 sensory box/GGDEF family protein YP_663668.1 KEGG: sru:SRU_1464 hypothetical protein YP_663669.1 PFAM: extracellular solute-binding protein, family 1; KEGG: sme:SMc01496 probable sorbitol-binding periplasmic protein YP_663670.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01497 probable sorbitol/mannitol transport inner membrane transmembrane protein YP_663671.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01498 probable sorbitol/mannitol transport inner membrane protein YP_663672.1 PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; KEGG: ret:RHE_CH03679 sorbitol/mannitol ABC transporter, ATP-binding protein YP_663673.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: pha:PSHAb0206 putative unknown enzyme YP_663674.1 PFAM: putative sugar-binding region; KEGG: pha:PSHAa1504 transcriptional regulator YP_663675.1 PFAM: PfkB; KEGG: bsu:BG12796 fructokinase YP_663676.1 PFAM: regulatory protein, TetR; KEGG: son:SO3494 transcriptional regulator, TetR family YP_663677.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: son:SO3493 RND multidrug efflux membrane fusion protein MexE YP_663678.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: son:SO3492 RND multidrug efflux transporter MexF YP_663679.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: psp:PSPPH_2271 outer membrane efflux protein YP_663680.1 PFAM: regulatory protein, TetR; KEGG: bja:blr7984 transcriptional regulatory protein YP_663681.1 PFAM: glutathione S-transferase-like; KEGG: sce:YLL060C Glutathione S-transferase capable of homodimerization; functional overlap with Gtt2p, Grx1p, and Grx2p YP_663682.1 KEGG: pha:PSHAb0211 hypothetical protein YP_663685.1 PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAb0050 hypothetical protein YP_663686.1 PFAM: transport-associated; KEGG: pha:PSHAa0325 hypothetical protein YP_663687.1 PFAM: aldo/keto reductase; KEGG: rso:RSc1154 putative reductase oxidoreductase protein YP_663688.1 KEGG: ana:alr5319 hypothetical protein YP_663689.1 KEGG: pha:PSHAa0536 hypothetical protein YP_663690.1 PFAM: protein of unknown function DUF1328; KEGG: pha:PSHAa0537 hypothetical protein YP_663691.1 KEGG: ilo:IL1677 hypothetical protein YP_663692.1 KEGG: pae:PA2708 hypothetical protein YP_663693.1 PFAM: protein of unknown function UPF0057; KEGG: dde:Dde_1753 Pmp3 family protein YP_663694.1 TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: noc:Noc_1073 ribonuclease BN YP_663695.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pha:PSHAa2520 mechanosensitive channel protein YP_663696.1 KEGG: ilo:IL2354 permease of the major facilitator superfamily YP_663697.1 PFAM: Na+/H+ antiporter NhaA; KEGG: tdn:Tmden_1784 Na+/H+ antiporter NhaA YP_663698.1 TIGRFAM: gamma-glutamyl phosphate reductase; KEGG: pha:PSHAa0280 gamma-glutamyl phosphate reductase YP_663699.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_663700.1 TIGRFAM: SSS sodium solute transporter superfamily sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: cps:CPS_3463 proline/sodium symporter YP_663701.1 PFAM: regulatory protein, MarR; KEGG: cps:CPS_1337 transcriptional regulator, MarR family YP_663702.1 KEGG: pha:PSHAb0553 putative lipoprotein YP_663703.1 PFAM: VacJ-like lipoprotein; KEGG: pca:Pcar_0450 surface lipoprotein-like YP_663704.1 KEGG: tdn:Tmden_1281 hypothetical protein YP_663705.1 PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: pha:PSHAa2394 two-component sensor histidine kinase and response regulator hybrid YP_663706.1 PFAM: response regulator receiver; KEGG: pha:PSHAa2395 two-component response regulator YP_663707.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like CHASE3; KEGG: pha:PSHAa2396 two-component sensor histidine kinase YP_663708.1 KEGG: pha:PSHAa2397 hypothetical protein YP_663709.1 PFAM: response regulator receiver sigma-54 factor, interaction region helix-turn-helix, Fis-type; SMART: ATPase; KEGG: pha:PSHAa2398 sigma-54 interacting response regulator protein YP_663710.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pha:PSHAa1378 hypothetical protein YP_663711.1 PFAM: RimK-like ATP-grasp; KEGG: pha:PSHAa1377 hypothetical protein YP_663712.1 PFAM: beta-lactamase; KEGG: xcv:XCV2967 beta-lactamase precursor YP_663713.1 PFAM: beta-lactamase Peptidoglycan-binding domain 1 N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: pha:PSHAa0522 hypothetical protein YP_663714.1 KEGG: ilo:IL2339 outer membrane protein YP_663715.1 PFAM: glycoside hydrolase, family 3-like; KEGG: pha:PSHAb0065 beta-hexosaminidase A precursor (N-acetyl-beta-glucosaminidase) (beta-N-acetylhexosaminidase) (Chitobiase) YP_663716.1 PFAM: NUDIX hydrolase; KEGG: son:SO0464 MutT/nudix family protein YP_663717.1 PFAM: helix-turn-helix protein RpiR sugar isomerase (SIS); KEGG: yps:YPTB2884 putative RpiR-family transcriptional regulatory protein YP_663718.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: xcv:XCV2894 TonB-dependent outer membrane receptor YP_663720.1 PFAM: Uncharacterised conserved protein UCP016719; KEGG: pha:PSHAa0521 hypothetical protein YP_663721.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway YP_663722.1 PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: cvi:CV2896 probable N-acetylglucosamine kinase YP_663723.1 PFAM: Na+/solute symporter; KEGG: tdn:Tmden_2070 Na+/solute symporter YP_663724.1 PFAM: NLP/P60; KEGG: xcb:XC_3878 hypothetical protein YP_663725.1 PFAM: protein of unknown function DUF819; KEGG: bha:BH3005 hypothetical protein YP_663726.1 PFAM: sugar isomerase (SIS); KEGG: son:SO3506 glucosamine-6-phosphate isomerase YP_663727.1 KEGG: son:SO3505 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase YP_663728.1 TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: tdn:Tmden_2077 glucose/galactose transporter YP_663729.1 PFAM: peptidase U61, LD-carboxypeptidase A; KEGG: ava:Ava_4926 twin-arginine translocation pathway signal YP_663730.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein response regulator receiver; KEGG: tdn:Tmden_0218 diguanylate cyclase (GGDEF domain) YP_663731.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: fra:Francci3_0673 filamentation induced by cAMP protein Fic YP_663733.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: son:SO2525 ABC transporter, ATP-binding protein YP_663734.1 PFAM: chemotaxis sensory transducer; KEGG: pha:PSHAb0277 putative methyl-accepting chemotaxis protein YP_663735.1 KEGG: ilo:IL1545 secreted protein, containing thioredoxin-like domain YP_663736.1 PFAM: chemotaxis sensory transducer; KEGG: pha:PSHAb0277 putative methyl-accepting chemotaxis protein YP_663737.1 KEGG: bja:bll1370 hypothetical protein YP_663738.1 KEGG: mbo:Mb2023 hypothetical protein YP_663739.1 PFAM: regulatory protein, TetR; KEGG: pfl:PFL_2966 transcriptional regulator, TetR family YP_663740.1 PFAM: malic enzyme-like malic enzyme, NAD-binding; KEGG: ilo:IL2463 NADP-dependent malic enzyme YP_663741.1 PFAM: ribosomal protein L31; KEGG: pmu:PM1142 50S ribosomal protein L31 YP_663742.1 TIGRFAM: primosomal protein N'; PFAM: helicase-like type III restriction enzyme, res subunit DEAD/DEAH box helicase-like; KEGG: ppr:PBPRA0257 primosomal protein N' YP_663743.1 PFAM: Sporulation related; KEGG: vfi:VF2276 cell division protein FtsN YP_663744.1 heat shock protein involved in degradation of misfolded proteins YP_663745.1 heat shock protein involved in degradation of misfolded proteins YP_663746.1 PFAM: beta-lactamase; KEGG: sma:SAV1304 putative esterase YP_663747.1 KEGG: tcx:Tcr_0271 hypothetical protein YP_663748.1 KEGG: pae:PA2779 hypothetical protein YP_663750.1 PFAM: Na+/H+ antiporter NhaA; KEGG: pfo:Pfl_1234 Na+/H+ antiporter NhaA YP_663751.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: psb:Psyr_2422 regulatory protein, LysR:LysR, substrate-binding YP_663752.1 PFAM: SH3, type 3; SMART: SH3-like region; KEGG: btk:BT9727_1787 NLP/P60 family protein YP_663753.1 KEGG: hch:HCH_04563 hypothetical protein YP_663754.1 PFAM: glutamine synthetase, catalytic region; KEGG: syn:slr0288 glutamate-ammonia ligase, glutamine synthetase type III YP_663755.1 KEGG: pha:PSHAa1373 hypothetical protein YP_663756.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_663757.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_663758.1 PFAM: protein of unknown function DUF155; KEGG: wsu:WS1725 hypothetical protein YP_663759.1 TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: vfi:VF2489 glutathione reductase YP_663760.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: vpa:VP0070 oligopeptidase A YP_663761.1 KEGG: pha:PSHAa0181 hypothetical protein YP_663762.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: yps:YPTB0255 ubiquinone/menaquinone biosynthesis methyltransferase YP_663763.1 PFAM: protein of unknown function DUF1243; KEGG: ppr:PBPRA0117 conserved hypothetical protein YP_663764.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1; KEGG: pha:PSHAa2928 2-octaprenylphenol hydroxylase; ubiquinone biosynthesis YP_663765.1 KEGG: cps:CPS_1665 hypothetical protein YP_663766.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: hit:NTHI0279 sec-independent protein translocase protein TatA/E YP_663767.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: ppr:PBPRA0120 sec-independent protein translocase protein TatB YP_663768.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: cps:CPS_0165 Sec-independent periplasmic protein translocation protein TatC YP_663769.1 KEGG: son:SO4205 hypothetical protein YP_663770.1 PFAM: TatD-related deoxyribonuclease; KEGG: ilo:IL2367 Mg-dependent DNase YP_663771.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein Diverse 7TM receptor, transmembrane region; KEGG: son:SO4207 GGDEF domain protein YP_663772.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_663773.1 PFAM: Ppx/GppA phosphatase; KEGG: pha:PSHAa0115 guanosine pentaphosphate phosphohydrolase YP_663774.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation YP_663775.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: vpa:VP3001 thioredoxin YP_663776.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_663777.1 KEGG: vvy:VV3218 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_663778.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_663779.1 PFAM: RNA binding S1; SMART: Resolvase, RNase H-like fold; KEGG: pha:PSHAa2854 conserved protein with nucleic acid-binding protein-like domain (transcriptional accessory protein) YP_663780.1 KEGG: son:SO2799 lipoprotein, putative YP_663781.1 KEGG: pha:PSHAa2855 hypothetical protein YP_663782.1 KEGG: ilo:IL0279 hypothetical protein YP_663783.1 TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; KEGG: vpa:VP0148 BioH protein YP_663784.1 KEGG: ssn:SSO_3544 hypothetical protein YP_663785.1 SMART: Peptidase M14, carboxypeptidase A; KEGG: pha:PSHAa2859 hypothetical protein YP_663786.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source YP_663787.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: ppr:PBPRA0175 putative DNA-damage-inducible protein F YP_663788.1 PFAM: polysaccharide deacetylase; KEGG: ilo:IL0251 polysaccharide deacetylase family protein YP_663789.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tte:TTE0581 acetyltransferase YP_663790.1 PFAM: electron transport protein SCO1/SenC; KEGG: pha:PSHAa2864 SCO1/SenC protein (copper-binding protein) YP_663791.1 converts protoheme IX and farnesyl diphosphate to heme O YP_663792.1 PFAM: cytochrome oxidase assembly; KEGG: ilo:IL0254 uncharacterized protein required for cytochrome oxidase assembly YP_663793.1 KEGG: ppr:PBPRA0172 conserved hypothetical protein YP_663794.1 KEGG: cps:CPS_0232 hypothetical protein YP_663795.1 KEGG: vpa:VPA0541 hypothetical protein YP_663796.1 PFAM: cytochrome c oxidase, subunit III; KEGG: ilo:IL0257 cytochrome c oxidase subunit III YP_663797.1 involved in the insertion of copper into subunit I of cytochrome C oxidase YP_663798.1 PFAM: cytochrome c oxidase, subunit I; KEGG: son:SO4607 cytochrome c oxidase, subunit I YP_663799.1 PFAM: cytochrome c oxidase, subunit II cytochrome c, class I cytochrome C oxidase subunit II, transmembrane region; KEGG: ilo:IL0260 cytochrome c oxidase, subunit II YP_663800.1 Represses a number of genes involved in the response to DNA damage YP_663801.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO4602 glycerol-3-phosphate acyltransferase YP_663802.1 TIGRFAM: threonine dehydratase, biosynthetic; PFAM: Threonine dehydratase-like Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: vfi:VF2560 threonine dehydratase YP_663803.1 KEGG: son:SO4345 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_663804.1 PFAM: protein of unknown function UPF0126; KEGG: ilo:IL2151 hypothetical protein YP_663805.1 KEGG: cps:CPS_4841 competence protein ComM; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit ATPase associated with various cellular activities, AAA_5; SMART: ATPase YP_663806.1 PFAM: PepSY-associated TM helix; KEGG: ccr:CC1782 hypothetical protein YP_663807.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate YP_663808.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_663809.1 KEGG: cps:CPS_1368 hypothetical protein YP_663810.1 PFAM: OmpA/MotB 17 kDa surface antigen; KEGG: ilo:IL1565 outer membrane protein and related peptidoglycan-associated (LipO)proteins YP_663811.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rba:RB11273 bicyclomycin resistance protein YP_663812.1 PFAM: Phosphoglycerate mutase; KEGG: ilo:IL1582 broad specificity phosphatase, PhoE-like YP_663813.1 PFAM: carbonic anhydrase; KEGG: son:SO2474 carbonic anhydrase family protein YP_663814.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: cps:CPS_4613 membrane protein YP_663815.1 PFAM: peptidase M20 peptidase dimerisation; KEGG: rpa:RPA0412 hypothetical protein YP_663816.1 KEGG: pha:PSHAa0702 hypothetical protein ; membrane protein YP_663817.1 PFAM: Invasion associated locus B; KEGG: bja:bll3901 hypothetical protein YP_663818.1 PFAM: Nidogen, extracellular region; KEGG: cch:Cag_1897 nidogen, extracellular region YP_663819.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pha:PSHAb0118 respiratory NADH dehydrogenase II YP_663821.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_663822.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_663823.1 KEGG: pha:PSHAb0057 putative Zn-dependent aminopeptidase YP_663824.1 KEGG: pha:PSHAb0058 putative orphan protein YP_663825.1 PFAM: protein of unknown function UPF0118; KEGG: vpa:VP0091 putative permease protein YP_663827.1 KEGG: pfo:Pfl_5467 hypothetical protein YP_663828.1 KEGG: ilo:IL2145 hypothetical protein YP_663829.1 PFAM: protein of unknown function DUF1285; KEGG: pfl:PFL_1807 hypothetical protein YP_663830.1 PFAM: amidohydrolase Amidohydrolase 3; KEGG: ilo:IL2390 Xaa-Pro dipeptidase family enzyme YP_663831.1 KEGG: pha:PSHAa0344 hypothetical protein YP_663832.1 KEGG: hch:HCH_03971 hypothetical protein YP_663833.1 PFAM: SirA-like; KEGG: pha:PSHAa0009 small ubiquitous RNA-binding protein YP_663834.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_663835.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_663836.1 TIGRFAM: conserved hypothetical protein; PFAM: YicC-like-like Domain of unknown function DUF1732; KEGG: cps:CPS_0107 conserved hypothetical protein TIGR00255 YP_663837.1 KEGG: rba:RB3703 probable transcriptional regulator YP_663838.1 KEGG: pha:PSHAa2265 metal-dependent phosphohydrolase domain; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region YP_663839.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3737 TonB-dependent receptor YP_663840.1 PFAM: SapC; KEGG: cps:CPS_3736 hypothetical protein YP_663841.1 SMART: Transcription factor jumonji/aspartyl beta-hydroxylase; KEGG: xcb:XC_4055 Pass1-related protein YP_663842.1 PFAM: tryptophan halogenase; KEGG: cps:CPS_3734 putative tryptophan halogenase YP_663843.1 KEGG: cps:CPS_0241 hypothetical protein YP_663844.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: cps:CPS_3583 putative methylated-DNA binding protein YP_663845.1 PFAM: DTW domain containing protein; KEGG: son:SO4554 hypothetical protein YP_663846.1 PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt Diverse 7TM receptor, transmembrane region; KEGG: cps:CPS_4481 sensor histidine kinase/response regulator YP_663847.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_663848.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_663849.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_663850.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_663851.1 TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+-transporting two-sector ATPase, delta (OSCP) subunit; KEGG: son:SO4750 ATP synthase F1, delta subunit YP_663852.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_663853.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_663854.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_663855.1 PFAM: ATP synthase I chain; KEGG: vch:VC2771 ATP synthase protein I YP_663856.1 TIGRFAM: parB-like partition proteins; PFAM: ParB-like nuclease; KEGG: pha:PSHAa3016 partitioning protein B YP_663857.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO4756 ParA family protein YP_663858.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: ppr:PBPRA3614 putative glucose inhibited division protein B YP_663859.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_663860.1 KEGG: ppu:PP1552 phage replication protein, putative YP_663862.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: sdy:SDY_4006 initiation of chromosome replication YP_663863.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_663864.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_663865.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: pha:PSHAa3022 preprotein translocase ; inner membrane protein (IMP) integration factor; binds TM regions of nascent IMPs; required for sec-independent IMP integration; associated with the with SecYEG and SecDFyajC translocase YP_663866.1 PFAM: protein of unknown function DUF37; KEGG: bld:BLi03210 hypothetical protein YP_663867.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: pmu:PM1163 ribonuclease P YP_663868.1 PFAM: ribosomal protein L34; KEGG: cps:CPS_5053 ribosomal protein L34