-- dump date 20140620_003222 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_659588.1 109896333 4171826 96..1520 1 NC_008228.1 KEGG: vpa:VP0011 chromosomal DNA replication initiator DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator, DnaA-like Chromosomal replication initiator, DnaA; SMART: ATPase; chromosomal replication initiator protein DnaA 1520 4171826 Patl_0001 Pseudoalteromonas atlantica T6c chromosomal replication initiator protein DnaA YP_659588.1 96 D 342610 CDS YP_659589.1 109896334 4171827 1541..2644 1 NC_008228.1 KEGG: ilo:IL0002 DNA polymerase sliding clamp subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; DNA polymerase III subunit beta 2644 4171827 Patl_0002 Pseudoalteromonas atlantica T6c DNA polymerase III subunit beta YP_659589.1 1541 D 342610 CDS YP_659590.1 109896335 4171828 2667..3758 1 NC_008228.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC protein-like; KEGG: vpa:VP0013 RecF protein; DNA replication and repair protein RecF 3758 4171828 Patl_0003 Pseudoalteromonas atlantica T6c DNA replication and repair protein RecF YP_659590.1 2667 D 342610 CDS YP_659591.1 109896336 4171829 3763..6183 1 NC_008228.1 KEGG: ppr:PBPRA0011 putative DNA gyrase, subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B-like ATP-binding region, ATPase-like TOPRIM domain containing protein DNA topoisomerase, type IIA, subunit B, region 2; SMART: DNA topoisomerase, type IIA, subunit B or-like; DNA gyrase subunit B 6183 4171829 Patl_0004 Pseudoalteromonas atlantica T6c DNA gyrase subunit B YP_659591.1 3763 D 342610 CDS YP_659592.1 109896337 4171830 6298..6996 1 NC_008228.1 TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: dps:DP1920 hypothetical protein; aspartate racemase 6996 4171830 Patl_0005 Pseudoalteromonas atlantica T6c aspartate racemase YP_659592.1 6298 D 342610 CDS YP_659593.1 109896338 4171831 complement(7111..8718) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein histidine kinase, HAMP region; KEGG: tdn:Tmden_2088 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); diguanylate cyclase 8718 4171831 Patl_0006 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_659593.1 7111 R 342610 CDS YP_659594.1 109896339 4171832 complement(8792..9232) 1 NC_008228.1 KEGG: hch:HCH_00343 hypothetical protein; hypothetical protein 9232 4171832 Patl_0007 Pseudoalteromonas atlantica T6c hypothetical protein YP_659594.1 8792 R 342610 CDS YP_659595.1 109896340 4171833 complement(9269..11347) 1 NC_008228.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 11347 glyS 4171833 glyS Pseudoalteromonas atlantica T6c glycyl-tRNA synthetase subunit beta YP_659595.1 9269 R 342610 CDS YP_659596.1 109896341 4171834 complement(11351..12256) 1 NC_008228.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 12256 glyQ 4171834 glyQ Pseudoalteromonas atlantica T6c glycyl-tRNA synthetase subunit alpha YP_659596.1 11351 R 342610 CDS YP_659597.1 109896342 4171835 12372..12944 1 NC_008228.1 KEGG: son:SO0016 DNA-3-methyladenine glycosidase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 12944 4171835 Patl_0010 Pseudoalteromonas atlantica T6c DNA-3-methyladenine glycosylase I YP_659597.1 12372 D 342610 CDS YP_659598.1 109896343 4171836 complement(12966..13415) 1 NC_008228.1 KEGG: pha:PSHAa2750 hypothetical protein; hypothetical protein 13415 4171836 Patl_0011 Pseudoalteromonas atlantica T6c hypothetical protein YP_659598.1 12966 R 342610 CDS YP_659599.1 109896344 4171837 complement(13424..13951) 1 NC_008228.1 PFAM: protein of unknown function DUF414; KEGG: pha:PSHAa2751 hypothetical protein; hypothetical protein 13951 4171837 Patl_0012 Pseudoalteromonas atlantica T6c hypothetical protein YP_659599.1 13424 R 342610 CDS YP_659600.1 109896345 4171838 complement(14429..15118) 1 NC_008228.1 PFAM: cytochrome c, class I; KEGG: vfi:VF0076 cytochrome c4; cytochrome c, class I 15118 4171838 Patl_0013 Pseudoalteromonas atlantica T6c cytochrome c, class I YP_659600.1 14429 R 342610 CDS YP_659601.1 109896346 4171839 15261..15881 1 NC_008228.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 15881 engB 4171839 engB Pseudoalteromonas atlantica T6c ribosome biogenesis GTP-binding protein YsxC YP_659601.1 15261 D 342610 CDS YP_659602.1 109896347 4171840 complement(16229..19015) 1 NC_008228.1 KEGG: vfi:VF0074 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase 5'-3' exonuclease 3'-5' exonuclease; SMART: Helix-hairpin-helix motif, class 2; DNA polymerase I 19015 4171840 Patl_0015 Pseudoalteromonas atlantica T6c DNA polymerase I YP_659602.1 16229 R 342610 CDS YP_659603.1 109896348 4171841 19825..21276 1 NC_008228.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: cps:CPS_0015 Trk system potassium uptake protein TrkH; TrkH family potassium uptake protein 21276 4171841 Patl_0016 Pseudoalteromonas atlantica T6c TrkH family potassium uptake protein YP_659603.1 19825 D 342610 CDS YP_659604.1 109896349 4171842 complement(21516..22262) 1 NC_008228.1 PFAM: TraT complement resistance; KEGG: pha:PSHAa0591 complement resistance protein precursor; TraT complement resistance 22262 4171842 Patl_0017 Pseudoalteromonas atlantica T6c TraT complement resistance YP_659604.1 21516 R 342610 CDS YP_659605.1 109896350 4171843 complement(22303..22662) 1 NC_008228.1 KEGG: pha:PSHAa0592 hypothetical protein; hypothetical protein 22662 4171843 Patl_0018 Pseudoalteromonas atlantica T6c hypothetical protein YP_659605.1 22303 R 342610 CDS YP_659606.1 109896351 4171844 complement(22918..23454) 1 NC_008228.1 KEGG: son:SO4561 hypothetical protein; hypothetical protein 23454 4171844 Patl_0019 Pseudoalteromonas atlantica T6c hypothetical protein YP_659606.1 22918 R 342610 CDS YP_659607.1 109896352 4173565 complement(23559..24938) 1 NC_008228.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 24938 trkA 4173565 trkA Pseudoalteromonas atlantica T6c potassium transporter peripheral membrane protein YP_659607.1 23559 R 342610 CDS YP_659608.1 109896353 4173566 complement(24986..26299) 1 NC_008228.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) NusB/RsmB/TIM44; KEGG: vfi:VF2545 16S rRNA m(5)C 967 methyltransferase; sun protein 26299 4173566 Patl_0021 Pseudoalteromonas atlantica T6c sun protein YP_659608.1 24986 R 342610 CDS YP_659609.1 109896354 4173567 complement(26296..27243) 1 NC_008228.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase-like; KEGG: son:SO0031 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 27243 4173567 Patl_0022 Pseudoalteromonas atlantica T6c methionyl-tRNA formyltransferase YP_659609.1 26296 R 342610 CDS YP_659610.1 109896355 4173568 complement(27253..27762) 1 NC_008228.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 27762 def 4173568 def Pseudoalteromonas atlantica T6c peptide deformylase YP_659610.1 27253 R 342610 CDS YP_659611.1 109896356 4173569 28001..29080 1 NC_008228.1 PFAM: Peptidoglycan-binding LysM; KEGG: pha:PSHAa0024 hypothetical protein; peptidoglycan-binding LysM 29080 4173569 Patl_0024 Pseudoalteromonas atlantica T6c peptidoglycan-binding LysM YP_659611.1 28001 D 342610 CDS YP_659612.1 109896357 4173570 29105..30244 1 NC_008228.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF protein; KEGG: ppr:PBPRA3577 hypothetical Smf protein; DNA protecting protein DprA 30244 4173570 Patl_0025 Pseudoalteromonas atlantica T6c DNA protecting protein DprA YP_659612.1 29105 D 342610 CDS YP_659613.1 109896358 4173571 30246..30722 1 NC_008228.1 PFAM: protein of unknown function DUF494; KEGG: cps:CPS_0023 smg protein; hypothetical protein 30722 4173571 Patl_0026 Pseudoalteromonas atlantica T6c hypothetical protein YP_659613.1 30246 D 342610 CDS YP_659614.1 109896359 4173572 30779..31339 1 NC_008228.1 PFAM: DNA topoisomerase, type IA, zn finger; KEGG: vch:VC0050 DNA topoisomerase I-related protein; DNA topoisomerase, type IA, Zn finger 31339 4173572 Patl_0027 Pseudoalteromonas atlantica T6c DNA topoisomerase, type IA, Zn finger YP_659614.1 30779 D 342610 CDS YP_659615.1 109896360 4173573 31408..31971 1 NC_008228.1 PFAM: SUA5/yciO/yrdC-like; KEGG: eca:ECA3996 putative DNA topoisomerase; SUA5/yciO/yrdC-like protein 31971 4173573 Patl_0028 Pseudoalteromonas atlantica T6c SUA5/yciO/yrdC-like protein YP_659615.1 31408 D 342610 CDS YP_659616.1 109896361 4173574 31975..32898 1 NC_008228.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 32898 4173574 Patl_0029 Pseudoalteromonas atlantica T6c coproporphyrinogen III oxidase YP_659616.1 31975 D 342610 CDS YP_659617.1 109896362 4173575 33101..33784 1 NC_008228.1 PFAM: OmpW; KEGG: cps:CPS_0029 outer membrane protein, OmpW family; OmpW protein 33784 4173575 Patl_0030 Pseudoalteromonas atlantica T6c OmpW protein YP_659617.1 33101 D 342610 CDS YP_659618.1 109896363 4173576 33931..34749 1 NC_008228.1 KEGG: vfi:VF2535 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase Shikimate dehydrogenase substrate binding-like; shikimate 5-dehydrogenase 34749 4173576 Patl_0031 Pseudoalteromonas atlantica T6c shikimate 5-dehydrogenase YP_659618.1 33931 D 342610 CDS YP_659619.1 109896364 4173577 34746..34988 1 NC_008228.1 hypothetical protein 34988 4173577 Patl_0032 Pseudoalteromonas atlantica T6c hypothetical protein YP_659619.1 34746 D 342610 CDS YP_659620.1 109896365 4173578 complement(35035..35568) 1 NC_008228.1 KEGG: pha:PSHAa0033 carbonic anhydrase/acetyltransferase; carbonic anhydrase/acetyltransferase 35568 4173578 Patl_0033 Pseudoalteromonas atlantica T6c carbonic anhydrase/acetyltransferase YP_659620.1 35035 R 342610 CDS YP_659621.1 109896366 4172880 complement(45151..46605) 1 NC_008228.1 KEGG: vpa:VP2035 hypothetical protein; hypothetical protein 46605 4172880 Patl_0035 Pseudoalteromonas atlantica T6c hypothetical protein YP_659621.1 45151 R 342610 CDS YP_659622.1 109896367 4172881 complement(46615..47304) 1 NC_008228.1 KEGG: vvy:VV1296 hypothetical protein; hypothetical protein 47304 4172881 Patl_0036 Pseudoalteromonas atlantica T6c hypothetical protein YP_659622.1 46615 R 342610 CDS YP_659623.1 109896368 4172882 47478..47951 1 NC_008228.1 PFAM: protein of unknown function DUF55; KEGG: vpa:VP2976 hypothetical protein; hypothetical protein 47951 4172882 Patl_0037 Pseudoalteromonas atlantica T6c hypothetical protein YP_659623.1 47478 D 342610 CDS YP_659624.1 109896369 4172883 complement(47969..48841) 1 NC_008228.1 hypothetical protein 48841 4172883 Patl_0038 Pseudoalteromonas atlantica T6c hypothetical protein YP_659624.1 47969 R 342610 CDS YP_659625.1 109896370 4172884 complement(48863..49564) 1 NC_008228.1 hypothetical protein 49564 4172884 Patl_0039 Pseudoalteromonas atlantica T6c hypothetical protein YP_659625.1 48863 R 342610 CDS YP_659626.1 109896371 4172885 complement(49808..51577) 1 NC_008228.1 PFAM: protein of unknown function DUF885; KEGG: son:SO4732 hypothetical protein; hypothetical protein 51577 4172885 Patl_0040 Pseudoalteromonas atlantica T6c hypothetical protein YP_659626.1 49808 R 342610 CDS YP_659627.1 109896372 4172886 complement(51625..51948) 1 NC_008228.1 KEGG: eca:ECA4350 hypothetical protein; hypothetical protein 51948 4172886 Patl_0041 Pseudoalteromonas atlantica T6c hypothetical protein YP_659627.1 51625 R 342610 CDS YP_659628.1 109896373 4172887 52248..53906 1 NC_008228.1 PFAM: peptidase M28; KEGG: ilo:IL1029 probable aminopeptidase; peptidase M28 53906 4172887 Patl_0042 Pseudoalteromonas atlantica T6c peptidase M28 YP_659628.1 52248 D 342610 CDS YP_659629.1 109896374 4172888 54077..55933 1 NC_008228.1 PFAM: protein of unknown function DUF885; KEGG: ilo:IL2415 hypothetical protein; hypothetical protein 55933 4172888 Patl_0043 Pseudoalteromonas atlantica T6c hypothetical protein YP_659629.1 54077 D 342610 CDS YP_659630.1 109896375 4172889 complement(56015..56608) 1 NC_008228.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 56608 slmA 4172889 slmA Pseudoalteromonas atlantica T6c nucleoid occlusion protein YP_659630.1 56015 R 342610 CDS YP_659631.1 109896376 4172890 complement(56671..57924) 1 NC_008228.1 KEGG: son:SO4249 DNA/pantothenate metabolism flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein DNA/pantothenate metabolism flavoprotein-like; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 57924 4172890 Patl_0045 Pseudoalteromonas atlantica T6c phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_659631.1 56671 R 342610 CDS YP_659632.1 109896377 4172891 58059..58733 1 NC_008228.1 PFAM: DNA repair protein RadC; KEGG: noc:Noc_0236 DNA repair protein RadC; DNA repair protein RadC 58733 4172891 Patl_0046 Pseudoalteromonas atlantica T6c DNA repair protein RadC YP_659632.1 58059 D 342610 CDS YP_659633.1 109896378 4172892 58861..59673 1 NC_008228.1 PFAM: glycosyl transferase, family 2; KEGG: bth:BT3365 putative glycosyltransferase; glycosyl transferase family protein 59673 4172892 Patl_0047 Pseudoalteromonas atlantica T6c glycosyl transferase family protein YP_659633.1 58861 D 342610 CDS YP_659634.1 109896379 4172893 59813..60049 1 NC_008228.1 PFAM: ribosomal protein L28; KEGG: msu:MS1942 ribosomal protein L28; 50S ribosomal protein L28 60049 4172893 Patl_0048 Pseudoalteromonas atlantica T6c 50S ribosomal protein L28 YP_659634.1 59813 D 342610 CDS YP_659635.1 109896380 4171883 60062..60217 1 NC_008228.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 60217 rpmG 4171883 rpmG Pseudoalteromonas atlantica T6c 50S ribosomal protein L33 YP_659635.1 60062 D 342610 CDS YP_659636.1 109896381 4171884 60368..60898 1 NC_008228.1 hypothetical protein 60898 4171884 Patl_0050 Pseudoalteromonas atlantica T6c hypothetical protein YP_659636.1 60368 D 342610 CDS YP_659637.1 109896382 4171885 60939..61751 1 NC_008228.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 61751 4171885 Patl_0051 Pseudoalteromonas atlantica T6c formamidopyrimidine-DNA glycosylase YP_659637.1 60939 D 342610 CDS YP_659638.1 109896383 4171886 complement(61839..62912) 1 NC_008228.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: son:SO4680 hypothetical protein; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 62912 4171886 Patl_0052 Pseudoalteromonas atlantica T6c CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_659638.1 61839 R 342610 CDS YP_659639.1 109896384 4171887 complement(63017..63499) 1 NC_008228.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 63499 coaD 4171887 coaD Pseudoalteromonas atlantica T6c phosphopantetheine adenylyltransferase YP_659639.1 63017 R 342610 CDS YP_659640.1 109896385 4171888 complement(63548..64951) 1 NC_008228.1 KEGG: cps:CPS_4204 hypothetical protein; hypothetical protein 64951 4171888 Patl_0054 Pseudoalteromonas atlantica T6c hypothetical protein YP_659640.1 63548 R 342610 CDS YP_659641.1 109896386 4171889 complement(65078..65797) 1 NC_008228.1 catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase 65797 4171889 Patl_0055 Pseudoalteromonas atlantica T6c 3-deoxy-D-manno-octulosonic-acid kinase YP_659641.1 65078 R 342610 CDS YP_659642.1 109896387 4171890 65951..67027 1 NC_008228.1 PFAM: glycosyl transferase, group 1; KEGG: cps:CPS_4182 putative lipopolysaccharide core biosynthesis mannosyltransferase; group 1 glycosyl transferase 67027 4171890 Patl_0056 Pseudoalteromonas atlantica T6c group 1 glycosyl transferase YP_659642.1 65951 D 342610 CDS YP_659643.1 109896388 4171891 complement(67034..68350) 1 NC_008228.1 PFAM: glycosyl transferase, group 1 Three-deoxy-D-manno-octulosonic-acid transferase-like; KEGG: pfl:PFL_0536 3-deoxy-D-manno-octulosonic-acid transferase; three-deoxy-D-manno-octulosonic-acid transferase-like protein 68350 4171891 Patl_0057 Pseudoalteromonas atlantica T6c three-deoxy-D-manno-octulosonic-acid transferase-like protein YP_659643.1 67034 R 342610 CDS YP_659644.1 109896389 4171892 68610..69029 1 NC_008228.1 KEGG: noc:Noc_1149 hypothetical protein; hypothetical protein 69029 4171892 Patl_0058 Pseudoalteromonas atlantica T6c hypothetical protein YP_659644.1 68610 D 342610 CDS YP_659645.1 109896390 4171893 69031..70212 1 NC_008228.1 KEGG: cps:CPS_0951 hypothetical protein; hypothetical protein 70212 4171893 Patl_0059 Pseudoalteromonas atlantica T6c hypothetical protein YP_659645.1 69031 D 342610 CDS YP_659646.1 109896391 4171894 70215..72662 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: cps:CPS_0952 GGDEF/EAL domain protein; diguanylate cyclase/phosphodiesterase 72662 4171894 Patl_0060 Pseudoalteromonas atlantica T6c diguanylate cyclase/phosphodiesterase YP_659646.1 70215 D 342610 CDS YP_659647.1 109896392 4171895 72809..74005 1 NC_008228.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 74005 4171895 Patl_0061 Pseudoalteromonas atlantica T6c 2-amino-3-ketobutyrate coenzyme A ligase YP_659647.1 72809 D 342610 CDS YP_659648.1 109896393 4171896 74002..75024 1 NC_008228.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 75024 tdh 4171896 tdh Pseudoalteromonas atlantica T6c L-threonine 3-dehydrogenase YP_659648.1 74002 D 342610 CDS YP_659649.1 109896394 4171897 75040..75360 1 NC_008228.1 PFAM: Rhodanese-like; KEGG: vvy:VV0117 rhodanese-related sulfurtransferase; thiosulfate sulfurtransferase 75360 4171897 Patl_0063 Pseudoalteromonas atlantica T6c thiosulfate sulfurtransferase YP_659649.1 75040 D 342610 CDS YP_659650.1 109896395 4171898 75364..76242 1 NC_008228.1 PFAM: Rhomboid-like protein; KEGG: cps:CPS_0123 putative GlpG protein; rhomboid-like protein 76242 4171898 Patl_0064 Pseudoalteromonas atlantica T6c rhomboid-like protein YP_659650.1 75364 D 342610 CDS YP_659651.1 109896396 4171899 complement(76249..76662) 1 NC_008228.1 PFAM: flagellar basal body-associated protein FliL; KEGG: pha:PSHAa2312 flagellar basal body-associated protein; flagellar basal body-associated protein FliL-like protein 76662 4171899 Patl_0065 Pseudoalteromonas atlantica T6c flagellar basal body-associated protein FliL-like protein YP_659651.1 76249 R 342610 CDS YP_659652.1 109896397 4171900 76790..77368 1 NC_008228.1 PFAM: Chorismate lyase; KEGG: son:SO0131 putative chorismate--pyruvate lyase; chorismate lyase 77368 4171900 Patl_0066 Pseudoalteromonas atlantica T6c chorismate lyase YP_659652.1 76790 D 342610 CDS YP_659653.1 109896398 4171901 77409..78230 1 NC_008228.1 TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: sdy:SDY_4534 4-hydroxybenzoate-octaprenyltransferase; 4-hydroxybenzoate polyprenyltransferase 78230 4171901 Patl_0067 Pseudoalteromonas atlantica T6c 4-hydroxybenzoate polyprenyltransferase YP_659653.1 77409 D 342610 CDS YP_659654.1 109896399 4171768 78268..80214 1 NC_008228.1 PFAM: histidine kinase, HAMP region chemotaxis sensory transducer; KEGG: hch:HCH_01925 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 80214 4171768 Patl_0068 Pseudoalteromonas atlantica T6c methyl-accepting chemotaxis sensory transducer YP_659654.1 78268 D 342610 CDS YP_659655.1 109896400 4171769 complement(80220..80471) 1 NC_008228.1 PFAM: protein of unknown function DUF526; KEGG: pha:PSHAa2763 hypothetical protein; hypothetical protein 80471 4171769 Patl_0069 Pseudoalteromonas atlantica T6c hypothetical protein YP_659655.1 80220 R 342610 CDS YP_659656.1 109896401 4171770 80654..82669 1 NC_008228.1 TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: ppr:PBPRA0091 putative ATP-dependent DNA helicase Rep; ATP-dependent DNA helicase Rep 82669 4171770 Patl_0070 Pseudoalteromonas atlantica T6c ATP-dependent DNA helicase Rep YP_659656.1 80654 D 342610 CDS YP_659657.1 109896402 4171771 complement(82673..85264) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL GAF; KEGG: ilo:IL0206 intracellular signaling protein (GAF,GGDEF,EAL domains); GAF sensor-containing diguanylate cyclase/phosphodiesterase 85264 4171771 Patl_0071 Pseudoalteromonas atlantica T6c GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_659657.1 82673 R 342610 CDS YP_659658.1 109896403 4171772 complement(85401..85811) 1 NC_008228.1 PFAM: cytochrome c, class I; KEGG: vvy:VV0041 cytochrome c5; cytochrome c, class I 85811 4171772 Patl_0072 Pseudoalteromonas atlantica T6c cytochrome c, class I YP_659658.1 85401 R 342610 CDS YP_659659.1 109896404 4171773 complement(85909..86748) 1 NC_008228.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 86748 4171773 Patl_0073 Pseudoalteromonas atlantica T6c DNA ligase YP_659659.1 85909 R 342610 CDS YP_659660.1 109896405 4171774 complement(87003..87830) 1 NC_008228.1 PFAM: alpha/beta hydrolase fold; KEGG: rba:RB13257 probable oxidoreductase-putative hydrolase involved in aromatic ring cleavage; alpha/beta hydrolase fold protein 87830 4171774 Patl_0074 Pseudoalteromonas atlantica T6c alpha/beta hydrolase fold protein YP_659660.1 87003 R 342610 CDS YP_659661.1 109896406 4171776 complement(88840..89112) 1 NC_008228.1 PFAM: Fe(II) trafficking protein YggX; KEGG: ilo:IL1984 hypothetical protein; hypothetical protein 89112 4171776 Patl_0075 Pseudoalteromonas atlantica T6c hypothetical protein YP_659661.1 88840 R 342610 CDS YP_659662.1 109896407 4171777 complement(89226..90290) 1 NC_008228.1 KEGG: son:SO3368 A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif HhH-GPD; SMART: Iron-sulfur cluster loop; A/G-specific adenine glycosylase 90290 4171777 Patl_0076 Pseudoalteromonas atlantica T6c A/G-specific adenine glycosylase YP_659662.1 89226 R 342610 CDS YP_659663.1 109896408 4171778 90367..91098 1 NC_008228.1 PFAM: alpha/beta hydrolase fold; KEGG: bba:Bd0910 putative hydrolase; alpha/beta hydrolase fold protein 91098 4171778 Patl_0077 Pseudoalteromonas atlantica T6c alpha/beta hydrolase fold protein YP_659663.1 90367 D 342610 CDS YP_659664.1 109896409 4171779 91179..91898 1 NC_008228.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 91898 trmB 4171779 trmB Pseudoalteromonas atlantica T6c tRNA (guanine-N(7)-)-methyltransferase YP_659664.1 91179 D 342610 CDS YP_659665.1 109896410 4171780 91898..92929 1 NC_008228.1 PFAM: methyltransferase small Methyltransferase small-like; KEGG: pha:PSHAa0552 ribosomal RNA small subunit methyltransferase C; rRNA (guanine-N(2)-)-methyltransferase 92929 4171780 Patl_0079 Pseudoalteromonas atlantica T6c rRNA (guanine-N(2)-)-methyltransferase YP_659665.1 91898 D 342610 CDS YP_659666.1 109896411 4171781 93048..94478 1 NC_008228.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 94478 glgA 4171781 glgA Pseudoalteromonas atlantica T6c glycogen synthase YP_659666.1 93048 D 342610 CDS YP_659667.1 109896412 4171782 94987..96576 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: ilo:IL0492 signal transduction histidine kinase (contains HAMP domain); histidine kinase 96576 4171782 Patl_0081 Pseudoalteromonas atlantica T6c histidine kinase YP_659667.1 94987 D 342610 CDS YP_659668.1 109896413 4171783 96793..97500 1 NC_008228.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: hit:NTHI1047 aerobic respiration control protein ArcA; two-component response regulator 97500 4171783 Patl_0082 Pseudoalteromonas atlantica T6c two-component response regulator YP_659668.1 96793 D 342610 CDS YP_659669.1 109896414 4171784 complement(97568..98053) 1 NC_008228.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: vpa:VP2862 FxsA protein; FxsA cytoplasmic membrane protein 98053 4171784 Patl_0083 Pseudoalteromonas atlantica T6c FxsA cytoplasmic membrane protein YP_659669.1 97568 R 342610 CDS YP_659670.1 109896415 4171785 98333..100111 1 NC_008228.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein 100111 dipZ 4171785 dipZ Pseudoalteromonas atlantica T6c thiol:disulfide interchange protein YP_659670.1 98333 D 342610 CDS YP_659671.1 109896416 4171786 100158..101012 1 NC_008228.1 KEGG: cac:CAC3665 alpha/beta superfamily hydrolase; hypothetical protein 101012 4171786 Patl_0085 Pseudoalteromonas atlantica T6c hypothetical protein YP_659671.1 100158 D 342610 CDS YP_659672.1 109896417 4172858 complement(101096..101725) 1 NC_008228.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 101725 upp 4172858 upp Pseudoalteromonas atlantica T6c uracil phosphoribosyltransferase YP_659672.1 101096 R 342610 CDS YP_659673.1 109896418 4172859 complement(101751..102350) 1 NC_008228.1 PFAM: protein of unknown function DUF479; KEGG: vch:VCA0769 hypothetical protein; hypothetical protein 102350 4172859 Patl_0087 Pseudoalteromonas atlantica T6c hypothetical protein YP_659673.1 101751 R 342610 CDS YP_659674.1 109896419 4172860 102565..103050 1 NC_008228.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 103050 4172860 Patl_0088 Pseudoalteromonas atlantica T6c 3-dehydroquinate dehydratase YP_659674.1 102565 D 342610 CDS YP_659675.1 109896420 4172861 103110..103556 1 NC_008228.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment; KEGG: vvy:VV3135 biotin carboxyl carrier protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein 103556 4172861 Patl_0089 Pseudoalteromonas atlantica T6c acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_659675.1 103110 D 342610 CDS YP_659676.1 109896421 4172862 103571..104920 1 NC_008228.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding Carbamoyl-phosphate synthetase large chain-like biotin carboxylase-like RimK-like ATP-grasp; KEGG: ppr:PBPRA3406 putative acetyl-CoA carboxylase, biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase 104920 4172862 Patl_0090 Pseudoalteromonas atlantica T6c acetyl-CoA carboxylase, biotin carboxylase YP_659676.1 103571 D 342610 CDS YP_659677.1 109896422 4172863 complement(104987..106351) 1 NC_008228.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cps:CPS_2888 MATE efflux family protein; MATE efflux family protein 106351 4172863 Patl_0091 Pseudoalteromonas atlantica T6c MATE efflux family protein YP_659677.1 104987 R 342610 CDS YP_659678.1 109896423 4172864 106492..107370 1 NC_008228.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 107370 prmA 4172864 prmA Pseudoalteromonas atlantica T6c 50S ribosomal protein L11 methyltransferase YP_659678.1 106492 D 342610 CDS YP_659679.1 109896424 4172865 complement(107394..107906) 1 NC_008228.1 PFAM: helix-turn-helix, HxlR type; KEGG: hch:HCH_00848 predicted transcriptional regulator; HxlR family transcriptional regulator 107906 4172865 Patl_0093 Pseudoalteromonas atlantica T6c HxlR family transcriptional regulator YP_659679.1 107394 R 342610 CDS YP_659680.1 109896425 4172866 108325..108507 1 NC_008228.1 KEGG: cps:CPS_3716 glycosyl hydrolase, family 16; hypothetical protein 108507 4172866 Patl_0094 Pseudoalteromonas atlantica T6c hypothetical protein YP_659680.1 108325 D 342610 CDS YP_659681.1 109896426 4172867 108792..109910 1 NC_008228.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: ath:At2g36310 inosine-uridine preferring nucleoside hydrolase family protein; inosine/uridine-preferring nucleoside hydrolase 109910 4172867 Patl_0095 Pseudoalteromonas atlantica T6c inosine/uridine-preferring nucleoside hydrolase YP_659681.1 108792 D 342610 CDS YP_659682.1 109896427 4172868 complement(110016..111032) 1 NC_008228.1 hypothetical protein 111032 4172868 Patl_0096 Pseudoalteromonas atlantica T6c hypothetical protein YP_659682.1 110016 R 342610 CDS YP_659683.1 109896428 4172869 complement(111033..111287) 1 NC_008228.1 hypothetical protein 111287 4172869 Patl_0097 Pseudoalteromonas atlantica T6c hypothetical protein YP_659683.1 111033 R 342610 CDS YP_659684.1 109896429 4172870 complement(111594..112109) 1 NC_008228.1 PFAM: sodium/calcium exchanger membrane region; KEGG: cef:CE0451 Ca2+:cation antiporter, CaCA family; sodium/calcium exchanger membrane region 112109 4172870 Patl_0098 Pseudoalteromonas atlantica T6c sodium/calcium exchanger membrane region YP_659684.1 111594 R 342610 CDS YP_659685.1 109896430 4172871 112604..114013 1 NC_008228.1 KEGG: cps:CPS_1161 putative lipoprotein; hypothetical protein 114013 4172871 Patl_0099 Pseudoalteromonas atlantica T6c hypothetical protein YP_659685.1 112604 D 342610 CDS YP_659686.1 109896431 4172872 complement(114100..114525) 1 NC_008228.1 PFAM: regulatory protein, MarR; KEGG: pha:PSHAb0179 putative OhrR transcriptional regulator, MarR/EmrR family; MarR family transcriptional regulator 114525 4172872 Patl_0100 Pseudoalteromonas atlantica T6c MarR family transcriptional regulator YP_659686.1 114100 R 342610 CDS YP_659687.1 109896432 4172873 114655..115083 1 NC_008228.1 PFAM: OsmC-like protein; KEGG: pha:PSHAb0180 putative organic hydroperoxide resistance protein; OsmC-like protein 115083 4172873 Patl_0101 Pseudoalteromonas atlantica T6c OsmC-like protein YP_659687.1 114655 D 342610 CDS YP_659688.1 109896433 4172874 115463..116398 1 NC_008228.1 PFAM: ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: bja:blr6138 hypothetical protein; ATPase 116398 4172874 Patl_0102 Pseudoalteromonas atlantica T6c ATPase YP_659688.1 115463 D 342610 CDS YP_659689.1 109896434 4172875 116399..117769 1 NC_008228.1 PFAM: VWA containing CoxE-like; KEGG: rpb:RPB_0718 VWA containing CoxE-like; VWA containing CoxE-like 117769 4172875 Patl_0103 Pseudoalteromonas atlantica T6c VWA containing CoxE-like YP_659689.1 116399 D 342610 CDS YP_659690.1 109896435 4172876 complement(117774..118760) 1 NC_008228.1 PFAM: helix-turn-helix, AraC type; KEGG: pfl:PFL_5085 transcriptional regulator, AraC family; AraC family transcriptional regulator 118760 4172876 Patl_0104 Pseudoalteromonas atlantica T6c AraC family transcriptional regulator YP_659690.1 117774 R 342610 CDS YP_659691.1 109896436 4171787 118957..120147 1 NC_008228.1 PFAM: acyl-CoA dehydrogenase-like; KEGG: ccr:CC1310 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase-like protein 120147 4171787 Patl_0105 Pseudoalteromonas atlantica T6c acyl-CoA dehydrogenase-like protein YP_659691.1 118957 D 342610 CDS YP_659692.1 109896437 4171788 120150..121289 1 NC_008228.1 PFAM: acyl-CoA dehydrogenase-like; KEGG: rpb:RPB_1750 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase-like protein 121289 4171788 Patl_0106 Pseudoalteromonas atlantica T6c acyl-CoA dehydrogenase-like protein YP_659692.1 120150 D 342610 CDS YP_659693.1 109896438 4171789 complement(123037..123513) 1 NC_008228.1 TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB region; KEGG: vpa:VP0152 transcription elongation factor GreB; transcription elongation factor GreB 123513 4171789 Patl_0107 Pseudoalteromonas atlantica T6c transcription elongation factor GreB YP_659693.1 123037 R 342610 CDS YP_659694.1 109896439 4171790 complement(123970..124719) 1 NC_008228.1 PFAM: FKBP-type peptidyl-prolyl isomerase-like peptidylprolyl isomerase, FKBP-type; KEGG: pha:PSHAa2901 periplasmic peptidyl-prolyl cis-trans isomerase; peptidyl-prolyl isomerase 124719 4171790 Patl_0108 Pseudoalteromonas atlantica T6c peptidyl-prolyl isomerase YP_659694.1 123970 R 342610 CDS YP_659695.1 109896440 4171791 124838..125812 1 NC_008228.1 PFAM: WD-40 repeat; KEGG: pha:PSHAa2902 G-protein beta WD-40 repeat; WD-40 repeat-containing protein 125812 4171791 Patl_0109 Pseudoalteromonas atlantica T6c WD-40 repeat-containing protein YP_659695.1 124838 D 342610 CDS YP_659696.1 109896441 4171792 125825..126037 1 NC_008228.1 PFAM: SlyX; KEGG: vpa:VP2780 SlyX protein; SlyX family protein 126037 4171792 Patl_0110 Pseudoalteromonas atlantica T6c SlyX family protein YP_659696.1 125825 D 342610 CDS YP_659697.1 109896442 4171793 complement(126077..126283) 1 NC_008228.1 TIGRFAM: conserved hypothetical protein; KEGG: cps:CPS_0434 conserved hypothetical protein; hypothetical protein 126283 4171793 Patl_0111 Pseudoalteromonas atlantica T6c hypothetical protein YP_659697.1 126077 R 342610 CDS YP_659698.1 109896443 4171794 126363..128315 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: ppr:PBPRA0301 putative ABC transporter, ATP-binding protein; ABC transporter-like protein 128315 4171794 Patl_0112 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_659698.1 126363 D 342610 CDS YP_659699.1 109896444 4171795 128355..128924 1 NC_008228.1 PFAM: GCN5-related N-acetyltransferase; KEGG: reu:Reut_A1932 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 128924 4171795 Patl_0113 Pseudoalteromonas atlantica T6c N-acetyltransferase GCN5 YP_659699.1 128355 D 342610 CDS YP_659700.1 109896445 4171796 complement(128929..129813) 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: cvi:CV0764 probable transcriptional regulator, LysR family; LysR family transcriptional regulator 129813 4171796 Patl_0114 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_659700.1 128929 R 342610 CDS YP_659701.1 109896446 4171797 129932..131038 1 NC_008228.1 PFAM: conserved hypothetical protein 698; KEGG: yps:YPTB1338 hypothetical protein; hypothetical protein 131038 4171797 Patl_0115 Pseudoalteromonas atlantica T6c hypothetical protein YP_659701.1 129932 D 342610 CDS YP_659702.1 109896447 4171798 complement(131145..133427) 1 NC_008228.1 TIGRFAM: putative alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: bfs:BF1814 putative outer membrane protein; putative alpha-1,2-mannosidase 133427 4171798 Patl_0116 Pseudoalteromonas atlantica T6c putative alpha-1,2-mannosidase YP_659702.1 131145 R 342610 CDS YP_659703.1 109896448 4171799 complement(133424..135652) 1 NC_008228.1 TIGRFAM: putative alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: bfr:BF0757 putative alpha-1,2-mannosidase; putative alpha-1,2-mannosidase 135652 4171799 Patl_0117 Pseudoalteromonas atlantica T6c putative alpha-1,2-mannosidase YP_659703.1 133424 R 342610 CDS YP_659704.1 109896449 4171800 complement(135665..136852) 1 NC_008228.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: cps:CPS_2647 hypothetical protein; N-acylglucosamine 2-epimerase 136852 4171800 Patl_0118 Pseudoalteromonas atlantica T6c N-acylglucosamine 2-epimerase YP_659704.1 135665 R 342610 CDS YP_659705.1 109896450 4171801 complement(136932..138209) 1 NC_008228.1 TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_2649 glucose/galactose transporter family protein; glucose/galactose transporter 138209 4171801 Patl_0119 Pseudoalteromonas atlantica T6c glucose/galactose transporter YP_659705.1 136932 R 342610 CDS YP_659706.1 109896451 4171802 complement(138266..140584) 1 NC_008228.1 TIGRFAM: putative alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: bth:BT3962 putative sugar hydrolase; putative alpha-1,2-mannosidase 140584 4171802 Patl_0120 Pseudoalteromonas atlantica T6c putative alpha-1,2-mannosidase YP_659706.1 138266 R 342610 CDS YP_659707.1 109896452 4171803 140937..141944 1 NC_008228.1 PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: vch:VC2677 transcriptional repressor, LacI family; LacI family transcriptional regulator 141944 4171803 Patl_0121 Pseudoalteromonas atlantica T6c LacI family transcriptional regulator YP_659707.1 140937 D 342610 CDS YP_659708.1 109896453 4171804 142237..145131 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAb0165 putative TonB-dependent receptor; outer membrane; TonB-dependent receptor 145131 4171804 Patl_0122 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_659708.1 142237 D 342610 CDS YP_659709.1 109896454 4171805 145201..148035 1 NC_008228.1 PFAM: coagulation factor 5/8 type-like; KEGG: sma:SAV2252 putative ATP/GTP-binding protein; coagulation factor 5/8 type-like protein 148035 4171805 Patl_0123 Pseudoalteromonas atlantica T6c coagulation factor 5/8 type-like protein YP_659709.1 145201 D 342610 CDS YP_659710.1 109896455 4171806 148122..148991 1 NC_008228.1 PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: cps:CPS_1026 BadF/BadG/BcrA/BcrD ATPase family protein; BadF/BadG/BcrA/BcrD type ATPase 148991 4171806 Patl_0124 Pseudoalteromonas atlantica T6c BadF/BadG/BcrA/BcrD type ATPase YP_659710.1 148122 D 342610 CDS YP_659711.1 109896456 4172152 149032..150015 1 NC_008228.1 KEGG: xcb:XC_1195 asparaginase; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: peptidase T2, asparaginase 2; twin-arginine translocation pathway signal protein 150015 4172152 Patl_0125 Pseudoalteromonas atlantica T6c twin-arginine translocation pathway signal protein YP_659711.1 149032 D 342610 CDS YP_659712.1 109896457 4172153 150012..151772 1 NC_008228.1 PFAM: glycoside hydrolase, family 85; KEGG: bha:BH0785 endo-beta-N-acetylglucosaminidase; glycoside hydrolase 151772 4172153 Patl_0126 Pseudoalteromonas atlantica T6c glycoside hydrolase YP_659712.1 150012 D 342610 CDS YP_659713.1 109896458 4172154 151772..152509 1 NC_008228.1 PFAM: CutC; KEGG: hsa:51076 cutC copper transporter homolog (E. coli); CutC protein 152509 4172154 Patl_0127 Pseudoalteromonas atlantica T6c CutC protein YP_659713.1 151772 D 342610 CDS YP_659714.1 109896459 4172155 152568..155183 1 NC_008228.1 PFAM: glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, sugar binding; KEGG: bfr:BF1733 beta-mannosidase; glycoside hydrolase 155183 4172155 Patl_0128 Pseudoalteromonas atlantica T6c glycoside hydrolase YP_659714.1 152568 D 342610 CDS YP_659715.1 109896460 4172156 155186..156976 1 NC_008228.1 PFAM: Na+/solute symporter; KEGG: bth:BT3029 Na+/glucose symporter; Na+/solute symporter 156976 4172156 Patl_0129 Pseudoalteromonas atlantica T6c Na+/solute symporter YP_659715.1 155186 D 342610 CDS YP_659716.1 109896461 4172157 157009..159252 1 NC_008228.1 TIGRFAM: putative alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: bth:BT3773 hypothetical protein; putative alpha-1,2-mannosidase 159252 4172157 Patl_0130 Pseudoalteromonas atlantica T6c putative alpha-1,2-mannosidase YP_659716.1 157009 D 342610 CDS YP_659717.1 109896462 4172158 159319..160314 1 NC_008228.1 PFAM: sugar isomerase (SIS); KEGG: son:SO3506 glucosamine-6-phosphate isomerase; glutamine-fructose-6-phosphate transaminase 160314 4172158 Patl_0131 Pseudoalteromonas atlantica T6c glutamine-fructose-6-phosphate transaminase YP_659717.1 159319 D 342610 CDS YP_659718.1 109896463 4172159 160684..161109 1 NC_008228.1 KEGG: xac:XAC3767 hypothetical protein; hypothetical protein 161109 4172159 Patl_0132 Pseudoalteromonas atlantica T6c hypothetical protein YP_659718.1 160684 D 342610 CDS YP_659719.1 109896464 4172160 161124..162251 1 NC_008228.1 KEGG: hch:HCH_06070 hypothetical protein; hypothetical protein 162251 4172160 Patl_0133 Pseudoalteromonas atlantica T6c hypothetical protein YP_659719.1 161124 D 342610 CDS YP_659720.1 109896465 4172161 162445..163506 1 NC_008228.1 PFAM: alpha/beta hydrolase fold; KEGG: pha:PSHAa2908 enzyme with alpha/beta-hydrolase domain; alpha/beta hydrolase fold protein 163506 4172161 Patl_0134 Pseudoalteromonas atlantica T6c alpha/beta hydrolase fold protein YP_659720.1 162445 D 342610 CDS YP_659721.1 109896466 4172162 163527..163763 1 NC_008228.1 PFAM: protein of unknown function UPF0270; KEGG: sec:SC3397 hypothetical protein; hypothetical protein 163763 4172162 Patl_0135 Pseudoalteromonas atlantica T6c hypothetical protein YP_659721.1 163527 D 342610 CDS YP_659722.1 109896467 4172163 complement(163800..164396) 1 NC_008228.1 PFAM: YceI; KEGG: hch:HCH_00246 hypothetical protein; YceI protein 164396 4172163 Patl_0136 Pseudoalteromonas atlantica T6c YceI protein YP_659722.1 163800 R 342610 CDS YP_659723.1 109896468 4172164 complement(164393..165229) 1 NC_008228.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: ilo:IL0324 3'-phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase; 3'(2'),5'-bisphosphate nucleotidase 165229 4172164 Patl_0137 Pseudoalteromonas atlantica T6c 3'(2'),5'-bisphosphate nucleotidase YP_659723.1 164393 R 342610 CDS YP_659724.1 109896469 4172165 complement(165229..165792) 1 NC_008228.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 165792 nudE 4172165 nudE Pseudoalteromonas atlantica T6c ADP-ribose diphosphatase NudE YP_659724.1 165229 R 342610 CDS YP_659725.1 109896470 4172166 165887..166570 1 NC_008228.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: cps:CPS_0423 HAD-superfamily hydrolase, subfamily IA, variant 3 family protein; HAD family hydrolase 166570 4172166 Patl_0139 Pseudoalteromonas atlantica T6c HAD family hydrolase YP_659725.1 165887 D 342610 CDS YP_659726.1 109896471 4172167 166737..167270 1 NC_008228.1 PFAM: Inorganic pyrophosphatase; KEGG: eca:ECA3593 inorganic pyrophosphatase; inorganic diphosphatase 167270 4172167 Patl_0140 Pseudoalteromonas atlantica T6c inorganic diphosphatase YP_659726.1 166737 D 342610 CDS YP_659727.1 109896472 4172168 167383..168615 1 NC_008228.1 PFAM: major facilitator superfamily MFS_1; KEGG: vfi:VFA0729 transporter, MFS superfamily; major facilitator superfamily transporter 168615 4172168 Patl_0141 Pseudoalteromonas atlantica T6c major facilitator superfamily transporter YP_659727.1 167383 D 342610 CDS YP_659728.1 109896473 4172169 168612..169073 1 NC_008228.1 KEGG: pha:PSHAa0449 hypothetical protein; hypothetical protein 169073 4172169 Patl_0142 Pseudoalteromonas atlantica T6c hypothetical protein YP_659728.1 168612 D 342610 CDS YP_659729.1 109896474 4172170 169158..170777 1 NC_008228.1 PFAM: histidine kinase, HAMP region chemotaxis sensory transducer; KEGG: hch:HCH_06069 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 170777 4172170 Patl_0143 Pseudoalteromonas atlantica T6c methyl-accepting chemotaxis sensory transducer YP_659729.1 169158 D 342610 CDS YP_659730.1 109896475 4172631 complement(170802..171509) 1 NC_008228.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: pha:PSHAa0187 hypothetical protein; 2OG-Fe(II) oxygenase 171509 4172631 Patl_0144 Pseudoalteromonas atlantica T6c 2OG-Fe(II) oxygenase YP_659730.1 170802 R 342610 CDS YP_659731.1 109896476 4172632 complement(171502..171909) 1 NC_008228.1 PFAM: thioesterase superfamily; KEGG: cps:CPS_0929 thioesterase family protein; thioesterase superfamily protein 171909 4172632 Patl_0145 Pseudoalteromonas atlantica T6c thioesterase superfamily protein YP_659731.1 171502 R 342610 CDS YP_659732.1 109896477 4172633 complement(171926..174754) 1 NC_008228.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: ppr:PBPRA3290 putative excinuclease ABC, subunit A; excinuclease ABC subunit A 174754 4172633 Patl_0146 Pseudoalteromonas atlantica T6c excinuclease ABC subunit A YP_659732.1 171926 R 342610 CDS YP_659733.1 109896478 4172634 175046..176389 1 NC_008228.1 PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa2706 transporter (MFS); major facilitator superfamily transporter 176389 4172634 Patl_0147 Pseudoalteromonas atlantica T6c major facilitator superfamily transporter YP_659733.1 175046 D 342610 CDS YP_659734.1 109896479 4172635 176706..177308 1 NC_008228.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: pha:PSHAa2705 single-strand binding protein (ssb) (helix-destabilizing protein); single-strand binding protein 177308 4172635 Patl_0148 Pseudoalteromonas atlantica T6c single-strand binding protein YP_659734.1 176706 D 342610 CDS YP_659735.1 109896480 4172636 177901..180309 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC3461 TonB-dependent receptor; TonB-dependent receptor 180309 4172636 Patl_0149 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_659735.1 177901 D 342610 CDS YP_659736.1 109896481 4172637 180520..180669 1 NC_008228.1 KEGG: vfi:VF1472 zinc finger protein; zinc finger protein 180669 4172637 Patl_0150 Pseudoalteromonas atlantica T6c zinc finger protein YP_659736.1 180520 D 342610 CDS YP_659737.1 109896482 4172638 complement(180712..182199) 1 NC_008228.1 PFAM: DNA photolyase, FAD-binding; KEGG: vch:VC1392 deoxyribodipyrimidine photolyase, putative; deoxyribodipyrimidine photolyase 182199 4172638 Patl_0151 Pseudoalteromonas atlantica T6c deoxyribodipyrimidine photolyase YP_659737.1 180712 R 342610 CDS YP_659738.1 109896483 4172639 complement(182192..183529) 1 NC_008228.1 PFAM: DNA photolyase, FAD-binding DNA photolyase-like; KEGG: ilo:IL0122 deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photolyase 183529 4172639 Patl_0152 Pseudoalteromonas atlantica T6c deoxyribodipyrimidine photolyase YP_659738.1 182192 R 342610 CDS YP_659739.1 109896484 4172640 complement(183672..185084) 1 NC_008228.1 PFAM: aldehyde dehydrogenase; KEGG: reu:Reut_A1459 aldehyde dehydrogenase (NAD+); betaine aldehyde dehydrogenase 185084 4172640 Patl_0153 Pseudoalteromonas atlantica T6c betaine aldehyde dehydrogenase YP_659739.1 183672 R 342610 CDS YP_659740.1 109896485 4172641 complement(185095..186795) 1 NC_008228.1 PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO1971 AMP-binding family protein; AMP-dependent synthetase and ligase 186795 4172641 Patl_0154 Pseudoalteromonas atlantica T6c AMP-dependent synthetase and ligase YP_659740.1 185095 R 342610 CDS YP_659741.1 109896486 4172642 complement(186821..189145) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: nar:Saro_2601 TonB-dependent receptor; TonB-dependent receptor 189145 4172642 Patl_0155 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_659741.1 186821 R 342610 CDS YP_659742.1 109896487 4172643 complement(189179..189631) 1 NC_008228.1 KEGG: nar:Saro_1690 cytochrome c, class I; cytochrome c, class I 189631 4172643 Patl_0156 Pseudoalteromonas atlantica T6c cytochrome c, class I YP_659742.1 189179 R 342610 CDS YP_659743.1 109896488 4172644 complement(189646..190203) 1 NC_008228.1 KEGG: nar:Saro_1688 amine dehydrogenase; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Methylamine dehydrogenase light chain, C terminal; twin-arginine translocation pathway signal protein 190203 4172644 Patl_0157 Pseudoalteromonas atlantica T6c twin-arginine translocation pathway signal protein YP_659743.1 189646 R 342610 CDS YP_659744.1 109896489 4172645 complement(190218..190838) 1 NC_008228.1 PFAM: Redoxin; KEGG: nar:Saro_1687 hypothetical protein; redoxin 190838 4172645 Patl_0158 Pseudoalteromonas atlantica T6c redoxin YP_659744.1 190218 R 342610 CDS YP_659745.1 109896490 4172646 complement(190845..191366) 1 NC_008228.1 KEGG: reu:Reut_B4079 hypothetical protein; hypothetical protein 191366 4172646 Patl_0159 Pseudoalteromonas atlantica T6c hypothetical protein YP_659745.1 190845 R 342610 CDS YP_659746.1 109896491 4172647 complement(191371..192522) 1 NC_008228.1 KEGG: nar:Saro_1685 amine dehydrogenase; amine dehydrogenase 192522 4172647 Patl_0160 Pseudoalteromonas atlantica T6c amine dehydrogenase YP_659746.1 191371 R 342610 CDS YP_659747.1 109896492 4172648 192790..193455 1 NC_008228.1 PFAM: regulatory protein, TetR; KEGG: nar:Saro_1684 transcriptional regulator, TetR family; TetR family transcriptional regulator 193455 4172648 Patl_0161 Pseudoalteromonas atlantica T6c TetR family transcriptional regulator YP_659747.1 192790 D 342610 CDS YP_659748.1 109896493 4172649 complement(193549..193977) 1 NC_008228.1 PFAM: regulatory proteins, AsnC/Lrp Helix-turn-helix, type 11; KEGG: pha:PSHAb0429 putative transcriptional regulator, AsnC family; AsnC family transcriptional regulator 193977 4172649 Patl_0162 Pseudoalteromonas atlantica T6c AsnC family transcriptional regulator YP_659748.1 193549 R 342610 CDS YP_659749.1 109896494 4172650 194129..195334 1 NC_008228.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 195334 argD 4172650 argD Pseudoalteromonas atlantica T6c bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_659749.1 194129 D 342610 CDS YP_659750.1 109896495 4174028 195340..196380 1 NC_008228.1 PFAM: arginine N-succinyltransferase beta subunit; KEGG: pha:PSHAb0427 putative arginine succinyltransferase; arginine N-succinyltransferase 196380 4174028 Patl_0164 Pseudoalteromonas atlantica T6c arginine N-succinyltransferase YP_659750.1 195340 D 342610 CDS YP_659751.1 109896496 4174029 196451..197257 1 NC_008228.1 KEGG: pha:PSHAb0425 hypothetical protein; hypothetical protein 197257 4174029 Patl_0165 Pseudoalteromonas atlantica T6c hypothetical protein YP_659751.1 196451 D 342610 CDS YP_659752.1 109896497 4174030 197510..198442 1 NC_008228.1 KEGG: son:SO4114.2 hypothetical biogenesis protein MshI; hypothetical protein 198442 4174030 Patl_0166 Pseudoalteromonas atlantica T6c hypothetical protein YP_659752.1 197510 D 342610 CDS YP_659753.1 109896498 4174031 198439..199050 1 NC_008228.1 KEGG: vvu:VV11433 MSHA biogenesis protein MshI; hypothetical protein 199050 4174031 Patl_0167 Pseudoalteromonas atlantica T6c hypothetical protein YP_659753.1 198439 D 342610 CDS YP_659754.1 109896499 4174032 199047..199739 1 NC_008228.1 KEGG: son:SO4114 MSHA biogenesis protein MshJ; MSHA biogenesis protein MshJ 199739 4174032 Patl_0168 Pseudoalteromonas atlantica T6c MSHA biogenesis protein MshJ YP_659754.1 199047 D 342610 CDS YP_659755.1 109896500 4174033 199741..200091 1 NC_008228.1 hypothetical protein 200091 4174033 Patl_0169 Pseudoalteromonas atlantica T6c hypothetical protein YP_659755.1 199741 D 342610 CDS YP_659756.1 109896501 4174034 200081..201733 1 NC_008228.1 TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein Secretin-like Secretin/TonB, short N-terminal; KEGG: cps:CPS_4576 MSHA biogenesis protein MshL; pilus (MSHA type) biogenesis protein MshL 201733 4174034 Patl_0170 Pseudoalteromonas atlantica T6c pilus (MSHA type) biogenesis protein MshL YP_659756.1 200081 D 342610 CDS YP_659757.1 109896502 4174035 201738..202646 1 NC_008228.1 KEGG: cps:CPS_4575 MSHA biogenesis protein MshM; MSHA biogenesis protein MshM 202646 4174035 Patl_0171 Pseudoalteromonas atlantica T6c MSHA biogenesis protein MshM YP_659757.1 201738 D 342610 CDS YP_659758.1 109896503 4174036 202643..203764 1 NC_008228.1 KEGG: ilo:IL0369 membrane associated TPR repeats containing protein; hypothetical protein 203764 4174036 Patl_0172 Pseudoalteromonas atlantica T6c hypothetical protein YP_659758.1 202643 D 342610 CDS YP_659759.1 109896504 4174037 203761..205674 1 NC_008228.1 PFAM: type II secretion system protein E General secretory system II, protein E-like; KEGG: pha:PSHAa2692 mannose-sensitive agglutinin (MSHA) biogenesis protein MshE (pilus type IV); type II secretion system protein E 205674 4174037 Patl_0173 Pseudoalteromonas atlantica T6c type II secretion system protein E YP_659759.1 203761 D 342610 CDS YP_659760.1 109896505 4174038 205667..206884 1 NC_008228.1 PFAM: type II secretion system protein; KEGG: ilo:IL0371 type II secretory pathway; type II secretion system protein 206884 4174038 Patl_0174 Pseudoalteromonas atlantica T6c type II secretion system protein YP_659760.1 205667 D 342610 CDS YP_659761.1 109896506 4174039 206888..207400 1 NC_008228.1 KEGG: cps:CPS_4571 hypothetical protein; hypothetical protein 207400 4174039 Patl_0175 Pseudoalteromonas atlantica T6c hypothetical protein YP_659761.1 206888 D 342610 CDS YP_659762.1 109896507 4174040 207418..208056 1 NC_008228.1 PFAM: methylation; KEGG: ilo:IL0373 pilin protein; prepilin-type cleavage/methylation protein 208056 4174040 Patl_0176 Pseudoalteromonas atlantica T6c prepilin-type cleavage/methylation protein YP_659762.1 207418 D 342610 CDS YP_659763.1 109896508 4174041 208160..208720 1 NC_008228.1 PFAM: methylation; KEGG: pha:PSHAa2689 mannose-sensitive agglutinin (MSHA) biogenesis protein MshA (pilus type IV); prepilin-type cleavage/methylation protein 208720 4174041 Patl_0177 Pseudoalteromonas atlantica T6c prepilin-type cleavage/methylation protein YP_659763.1 208160 D 342610 CDS YP_659764.1 109896509 4174042 208803..209369 1 NC_008228.1 PFAM: methylation; KEGG: cps:CPS_4568 MSHA pilin protein MshC; prepilin-type cleavage/methylation protein 209369 4174042 Patl_0178 Pseudoalteromonas atlantica T6c prepilin-type cleavage/methylation protein YP_659764.1 208803 D 342610 CDS YP_659765.1 109896510 4174043 209359..209928 1 NC_008228.1 TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: pha:PSHAa2687 mannose-sensitive agglutinin (MSHA) biogenesis protein MshD (pilus type IV); prepilin-type cleavage/methylation-like protein 209928 4174043 Patl_0179 Pseudoalteromonas atlantica T6c prepilin-type cleavage/methylation-like protein YP_659765.1 209359 D 342610 CDS YP_659766.1 109896511 4174044 209928..210770 1 NC_008228.1 PFAM: methylation; KEGG: cps:CPS_4566 putative MSHA biogenesis protein MshO; prepilin-type cleavage/methylation protein 210770 4174044 Patl_0180 Pseudoalteromonas atlantica T6c prepilin-type cleavage/methylation protein YP_659766.1 209928 D 342610 CDS YP_659767.1 109896512 4174045 210760..211200 1 NC_008228.1 KEGG: ilo:IL0378 type II secretory pathway component; type II secretory pathway component 211200 4174045 Patl_0181 Pseudoalteromonas atlantica T6c type II secretory pathway component YP_659767.1 210760 D 342610 CDS YP_659768.1 109896513 4174046 211200..215813 1 NC_008228.1 PFAM: CUB; KEGG: hch:HCH_06140 hypothetical protein; CUB domain-containing protein 215813 4174046 Patl_0182 Pseudoalteromonas atlantica T6c CUB domain-containing protein YP_659768.1 211200 D 342610 CDS YP_659769.1 109896514 4171729 216079..217122 1 NC_008228.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 217122 4171729 Patl_0183 Pseudoalteromonas atlantica T6c rod shape-determining protein MreB YP_659769.1 216079 D 342610 CDS YP_659770.1 109896515 4171730 217173..218033 1 NC_008228.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 218033 4171730 Patl_0184 Pseudoalteromonas atlantica T6c rod shape-determining protein MreC YP_659770.1 217173 D 342610 CDS YP_659771.1 109896516 4171731 218030..218506 1 NC_008228.1 PFAM: Rod shape-determining protein MreD; KEGG: cps:CPS_4558 rod shape-determining protein MreD; rod shape-determining protein MreD 218506 4171731 Patl_0185 Pseudoalteromonas atlantica T6c rod shape-determining protein MreD YP_659771.1 218030 D 342610 CDS YP_659772.1 109896517 4171732 218526..219104 1 NC_008228.1 TIGRFAM: maf protein; PFAM: Maf-like protein; KEGG: vvy:VV2931 nucleotide-binding protein; maf protein 219104 4171732 Patl_0186 Pseudoalteromonas atlantica T6c maf protein YP_659772.1 218526 D 342610 CDS YP_659773.1 109896518 4171733 219094..220557 1 NC_008228.1 involved in the processing of the 5'end of 16S rRNA; ribonuclease G 220557 4171733 Patl_0187 Pseudoalteromonas atlantica T6c ribonuclease G YP_659773.1 219094 D 342610 CDS YP_659774.1 109896519 4171734 220554..224459 1 NC_008228.1 TIGRFAM: conserved hypothetical protein; KEGG: pha:PSHAa2677 hypothetical protein; hypothetical protein 224459 4171734 Patl_0188 Pseudoalteromonas atlantica T6c hypothetical protein YP_659774.1 220554 D 342610 CDS YP_659775.1 109896520 4171735 224452..225282 1 NC_008228.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ilo:IL0387 predicted amidohydrolase, nitrilase family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 225282 4171735 Patl_0189 Pseudoalteromonas atlantica T6c nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_659775.1 224452 D 342610 CDS YP_659776.1 109896521 4171736 225275..226717 1 NC_008228.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: pha:PSHAa2675 suppressor of CsrA inhibitory activity; peptidase; involved in the control of DNA gyrase; C69 family peptidase 226717 4171736 Patl_0190 Pseudoalteromonas atlantica T6c C69 family peptidase YP_659776.1 225275 D 342610 CDS YP_659777.1 109896522 4171737 complement(226817..229252) 1 NC_008228.1 PFAM: Ig-like, group 1; KEGG: son:SO4080 hypothetical protein; Ig-like protein 229252 4171737 Patl_0191 Pseudoalteromonas atlantica T6c Ig-like protein YP_659777.1 226817 R 342610 CDS YP_659778.1 109896523 4171738 complement(229258..229785) 1 NC_008228.1 PFAM: protein of unknown function DUF615; KEGG: ilo:IL0389 hypothetical protein; hypothetical protein 229785 4171738 Patl_0192 Pseudoalteromonas atlantica T6c hypothetical protein YP_659778.1 229258 R 342610 CDS YP_659779.1 109896524 4171739 229894..231219 1 NC_008228.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: vpa:VP2676 PmbA protein; C69 family peptidase 231219 4171739 Patl_0193 Pseudoalteromonas atlantica T6c C69 family peptidase YP_659779.1 229894 D 342610 CDS YP_659780.1 109896525 4171740 complement(231294..233210) 1 NC_008228.1 PFAM: peptidase S9, prolyl oligopeptidase active site region; KEGG: gvi:glr0176 unknown protein; peptidase S9, prolyl oligopeptidase active site region 233210 4171740 Patl_0194 Pseudoalteromonas atlantica T6c peptidase S9, prolyl oligopeptidase active site region YP_659780.1 231294 R 342610 CDS YP_659781.1 109896526 4171741 complement(233297..234409) 1 NC_008228.1 hypothetical protein 234409 4171741 Patl_0195 Pseudoalteromonas atlantica T6c hypothetical protein YP_659781.1 233297 R 342610 CDS YP_659782.1 109896527 4171742 234578..235192 1 NC_008228.1 PFAM: glutathione S-transferase-like; KEGG: cps:CPS_2495 putative glutathione S-transferase; glutathione S-transferase-like protein 235192 4171742 Patl_0196 Pseudoalteromonas atlantica T6c glutathione S-transferase-like protein YP_659782.1 234578 D 342610 CDS YP_659783.1 109896528 4171743 complement(235224..235679) 1 NC_008228.1 PFAM: protein of unknown function DUF107; KEGG: pha:PSHAb0271 hypothetical protein; hypothetical protein 235679 4171743 Patl_0197 Pseudoalteromonas atlantica T6c hypothetical protein YP_659783.1 235224 R 342610 CDS YP_659784.1 109896529 4171744 complement(235660..236616) 1 NC_008228.1 PFAM: band 7 protein; KEGG: pha:PSHAb0272 hypothetical protein; hypothetical protein 236616 4171744 Patl_0198 Pseudoalteromonas atlantica T6c hypothetical protein YP_659784.1 235660 R 342610 CDS YP_659785.1 109896530 4171745 complement(236751..238082) 1 NC_008228.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 238082 4171745 Patl_0199 Pseudoalteromonas atlantica T6c proline dipeptidase YP_659785.1 236751 R 342610 CDS YP_659786.1 109896531 4171746 complement(238178..240091) 1 NC_008228.1 PFAM: Lytic transglycosylase, catalytic; KEGG: cps:CPS_0011 putative soluble lytic murein transglycosylase; lytic transglycosylase catalytic subunit 240091 4171746 Patl_0200 Pseudoalteromonas atlantica T6c lytic transglycosylase catalytic subunit YP_659786.1 238178 R 342610 CDS YP_659787.1 109896532 4171747 240399..242558 1 NC_008228.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 242558 fadB 4171747 fadB Pseudoalteromonas atlantica T6c multifunctional fatty acid oxidation complex subunit alpha YP_659787.1 240399 D 342610 CDS YP_659788.1 109896533 4171748 242580..243740 1 NC_008228.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 243740 fadA 4171748 fadA Pseudoalteromonas atlantica T6c 3-ketoacyl-CoA thiolase YP_659788.1 242580 D 342610 CDS YP_659789.1 109896534 4171749 complement(243936..246038) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: bfs:BF2697 putative exported TonB-dependent receptor protein; TonB-dependent receptor, plug 246038 4171749 Patl_0203 Pseudoalteromonas atlantica T6c TonB-dependent receptor, plug YP_659789.1 243936 R 342610 CDS YP_659790.1 109896535 4171750 246371..247648 1 NC_008228.1 PFAM: major facilitator superfamily MFS_1; KEGG: noc:Noc_1547 major facilitator superfamily MFS_1; major facilitator superfamily transporter 247648 4171750 Patl_0204 Pseudoalteromonas atlantica T6c major facilitator superfamily transporter YP_659790.1 246371 D 342610 CDS YP_659791.1 109896536 4171751 247723..248220 1 NC_008228.1 KEGG: pha:PSHAa1074 hypothetical protein; hypothetical protein 248220 4171751 Patl_0205 Pseudoalteromonas atlantica T6c hypothetical protein YP_659791.1 247723 D 342610 CDS YP_659792.1 109896537 4171752 complement(248297..250039) 1 NC_008228.1 KEGG: sbo:SBO_1464 hypothetical protein; hypothetical protein 250039 4171752 Patl_0206 Pseudoalteromonas atlantica T6c hypothetical protein YP_659792.1 248297 R 342610 CDS YP_659793.1 109896538 4171753 complement(250329..251219) 1 NC_008228.1 KEGG: vvy:VVA0953 dienelactone hydrolase; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: dienelactone hydrolase; twin-arginine translocation pathway signal protein 251219 4171753 Patl_0207 Pseudoalteromonas atlantica T6c twin-arginine translocation pathway signal protein YP_659793.1 250329 R 342610 CDS YP_659794.1 109896539 4171754 complement(251449..252048) 1 NC_008228.1 PFAM: regulatory protein, TetR; KEGG: cps:CPS_1681 transcriptional regulator, TetR family; TetR family transcriptional regulator 252048 4171754 Patl_0208 Pseudoalteromonas atlantica T6c TetR family transcriptional regulator YP_659794.1 251449 R 342610 CDS YP_659795.1 109896540 4171755 252198..252932 1 NC_008228.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR Male sterility-like; KEGG: rba:RB3632 conserved hypothetical protein-putative short chain dehydrogenase; short chain dehydrogenase 252932 4171755 Patl_0209 Pseudoalteromonas atlantica T6c short chain dehydrogenase YP_659795.1 252198 D 342610 CDS YP_659796.1 109896541 4171756 253297..254175 1 NC_008228.1 PFAM: protein of unknown function DUF344; KEGG: rpa:RPA4569 DUF344; hypothetical protein 254175 4171756 Patl_0210 Pseudoalteromonas atlantica T6c hypothetical protein YP_659796.1 253297 D 342610 CDS YP_659797.1 109896542 4171757 complement(254179..255201) 1 NC_008228.1 PFAM: Patatin; KEGG: wol:WD0565 patatin family protein; patatin 255201 4171757 Patl_0211 Pseudoalteromonas atlantica T6c patatin YP_659797.1 254179 R 342610 CDS YP_659798.1 109896543 4171758 complement(255445..256689) 1 NC_008228.1 PFAM: aminotransferase, class V aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mag:amb2464 serine-pyruvate aminotransferase; class V aminotransferase 256689 4171758 Patl_0212 Pseudoalteromonas atlantica T6c class V aminotransferase YP_659798.1 255445 R 342610 CDS YP_659799.1 109896544 4171759 256999..257700 1 NC_008228.1 PFAM: protein of unknown function DUF161; KEGG: hch:HCH_02915 hypothetical protein; hypothetical protein 257700 4171759 Patl_0213 Pseudoalteromonas atlantica T6c hypothetical protein YP_659799.1 256999 D 342610 CDS YP_659800.1 109896545 4171760 complement(257682..258101) 1 NC_008228.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ilo:IL0221 predicted dioxygenase of extradiol dioxygenase family; glyoxalase/bleomycin resistance protein/dioxygenase 258101 4171760 Patl_0214 Pseudoalteromonas atlantica T6c glyoxalase/bleomycin resistance protein/dioxygenase YP_659800.1 257682 R 342610 CDS YP_659801.1 109896546 4171761 complement(258225..259523) 1 NC_008228.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 259523 4171761 Patl_0215 Pseudoalteromonas atlantica T6c adenylosuccinate synthetase YP_659801.1 258225 R 342610 CDS YP_659802.1 109896547 4171762 complement(259605..259790) 1 NC_008228.1 KEGG: vpa:VP2813 hypothetical protein; hypothetical protein 259790 4171762 Patl_0216 Pseudoalteromonas atlantica T6c hypothetical protein YP_659802.1 259605 R 342610 CDS YP_659803.1 109896548 4171763 complement(259847..261346) 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: cps:CPS_0650 sensor histidine kinase; sensor signal transduction histidine kinase 261346 4171763 Patl_0217 Pseudoalteromonas atlantica T6c sensor signal transduction histidine kinase YP_659803.1 259847 R 342610 CDS YP_659804.1 109896549 4171764 complement(261346..262065) 1 NC_008228.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: cps:CPS_0651 DNA-binding response regulator; two component transcriptional regulator 262065 4171764 Patl_0218 Pseudoalteromonas atlantica T6c two component transcriptional regulator YP_659804.1 261346 R 342610 CDS YP_659805.1 109896550 4171765 complement(262171..262890) 1 NC_008228.1 KEGG: cps:CPS_0652 hypothetical protein; hypothetical protein 262890 4171765 Patl_0219 Pseudoalteromonas atlantica T6c hypothetical protein YP_659805.1 262171 R 342610 CDS YP_659806.1 109896551 4171766 complement(262901..263605) 1 NC_008228.1 KEGG: cps:CPS_0653 hypothetical protein; hypothetical protein 263605 4171766 Patl_0220 Pseudoalteromonas atlantica T6c hypothetical protein YP_659806.1 262901 R 342610 CDS YP_659807.1 109896552 4171767 complement(263790..264875) 1 NC_008228.1 KEGG: pha:PSHAb0433 hypothetical protein; hypothetical protein 264875 4171767 Patl_0221 Pseudoalteromonas atlantica T6c hypothetical protein YP_659807.1 263790 R 342610 CDS YP_659808.1 109896553 4171709 265252..265473 1 NC_008228.1 hypothetical protein 265473 4171709 Patl_0222 Pseudoalteromonas atlantica T6c hypothetical protein YP_659808.1 265252 D 342610 CDS YP_659809.1 109896554 4171710 complement(265559..266632) 1 NC_008228.1 PFAM: peptidase M42; KEGG: tcx:Tcr_0276 hypothetical protein; peptidase M42 266632 4171710 Patl_0223 Pseudoalteromonas atlantica T6c peptidase M42 YP_659809.1 265559 R 342610 CDS YP_659810.1 109896555 4171711 complement(266714..267616) 1 NC_008228.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: ilo:IL2312 phosphoribulokinase; phosphoribulokinase 267616 4171711 Patl_0224 Pseudoalteromonas atlantica T6c phosphoribulokinase YP_659810.1 266714 R 342610 CDS YP_659811.1 109896556 4171712 268013..268735 1 NC_008228.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 268735 ompR 4171712 ompR Pseudoalteromonas atlantica T6c osmolarity response regulator YP_659811.1 268013 D 342610 CDS YP_659812.1 109896557 4171713 268761..270059 1 NC_008228.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 270059 envZ 4171713 envZ Pseudoalteromonas atlantica T6c osmolarity sensor protein YP_659812.1 268761 D 342610 CDS YP_659813.1 109896558 4171714 complement(270114..271007) 1 NC_008228.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 271007 hslO 4171714 hslO Pseudoalteromonas atlantica T6c Hsp33-like chaperonin YP_659813.1 270114 R 342610 CDS YP_659814.1 109896559 4171715 complement(271040..271456) 1 NC_008228.1 PFAM: RNA-binding S4; KEGG: ilo:IL2028 ribosome-associated heat shock protein implicated in the recycling of the 50S subunit; RNA-binding protein S4 271456 4171715 Patl_0228 Pseudoalteromonas atlantica T6c RNA-binding protein S4 YP_659814.1 271040 R 342610 CDS YP_659815.1 109896560 4171716 271615..272310 1 NC_008228.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: neu:NE0658 short-chain dehydrogenase/reductase (SDR) superfamily; short-chain dehydrogenase/reductase SDR 272310 4171716 Patl_0229 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_659815.1 271615 D 342610 CDS YP_659816.1 109896561 4171717 272455..273309 1 NC_008228.1 TIGRFAM: general secretion pathway protein C; KEGG: cps:CPS_4592 general secretion pathway protein C; general secretion pathway protein C 273309 4171717 Patl_0230 Pseudoalteromonas atlantica T6c general secretion pathway protein C YP_659816.1 272455 D 342610 CDS YP_659817.1 109896562 4171718 273315..275384 1 NC_008228.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein NolW-like; KEGG: cps:CPS_4591 general secretion pathway protein D; general secretion pathway protein D 275384 4171718 Patl_0231 Pseudoalteromonas atlantica T6c general secretion pathway protein D YP_659817.1 273315 D 342610 CDS YP_659818.1 109896563 4171719 275387..276964 1 NC_008228.1 KEGG: ilo:IL2025 type II secretory pathway, ATPase PulE-like; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: ATPase; general secretory pathway protein E 276964 4171719 Patl_0232 Pseudoalteromonas atlantica T6c general secretory pathway protein E YP_659818.1 275387 D 342610 CDS YP_659819.1 109896564 4171720 276966..278186 1 NC_008228.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: ppr:PBPRA3479 putative general secretion pathway protein F; general secretion pathway protein F 278186 4171720 Patl_0233 Pseudoalteromonas atlantica T6c general secretion pathway protein F YP_659819.1 276966 D 342610 CDS YP_659820.1 109896565 4171721 278186..278626 1 NC_008228.1 TIGRFAM: general secretion pathway protein G; PFAM: methylation type II secretion system protein G; KEGG: eca:ECA3106 general secretion pathway protein G; general secretion pathway protein G 278626 4171721 Patl_0234 Pseudoalteromonas atlantica T6c general secretion pathway protein G YP_659820.1 278186 D 342610 CDS YP_659821.1 109896566 4171722 278669..279277 1 NC_008228.1 TIGRFAM: general secretion pathway protein H; PFAM: methylation; KEGG: cps:CPS_4587 general secretion pathway protein H; general secretion pathway protein H 279277 4171722 Patl_0235 Pseudoalteromonas atlantica T6c general secretion pathway protein H YP_659821.1 278669 D 342610 CDS YP_659822.1 109896567 4171723 279274..279669 1 NC_008228.1 TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J methylation; KEGG: cps:CPS_4586 general secretion pathway protein I; general secretion pathway protein I 279669 4171723 Patl_0236 Pseudoalteromonas atlantica T6c general secretion pathway protein I YP_659822.1 279274 D 342610 CDS YP_659823.1 109896568 4171724 279656..280354 1 NC_008228.1 TIGRFAM: general secretion pathway protein J; PFAM: methylation; KEGG: cps:CPS_4585 general secretion pathway protein J; general secretion pathway protein J 280354 4171724 Patl_0237 Pseudoalteromonas atlantica T6c general secretion pathway protein J YP_659823.1 279656 D 342610 CDS YP_659824.1 109896569 4171725 280351..281355 1 NC_008228.1 PFAM: General secretion pathway protein K; KEGG: son:SO0173 general secretion pathway protein K; general secretion pathway protein K 281355 4171725 Patl_0238 Pseudoalteromonas atlantica T6c general secretion pathway protein K YP_659824.1 280351 D 342610 CDS YP_659825.1 109896570 4171726 281435..282628 1 NC_008228.1 TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: son:SO0174 general secretion pathway protein L; general secretion pathway protein L 282628 4171726 Patl_0239 Pseudoalteromonas atlantica T6c general secretion pathway protein L YP_659825.1 281435 D 342610 CDS YP_659826.1 109896571 4171727 282630..283109 1 NC_008228.1 PFAM: General secretion pathway M protein; KEGG: son:SO0175 general secretion pathway protein M; general secretion pathway M protein 283109 4171727 Patl_0240 Pseudoalteromonas atlantica T6c general secretion pathway M protein YP_659826.1 282630 D 342610 CDS YP_659827.1 109896572 4171728 283106..283849 1 NC_008228.1 PFAM: type II secretion system protein N; KEGG: pha:PSHAa0242 general secretion pathway protein N; type II secretion system protein N 283849 4171728 Patl_0241 Pseudoalteromonas atlantica T6c type II secretion system protein N YP_659827.1 283106 D 342610 CDS YP_659828.1 109896573 4173989 complement(283943..284914) 1 NC_008228.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 284914 4173989 Patl_0242 Pseudoalteromonas atlantica T6c fructose-1,6-bisphosphatase YP_659828.1 283943 R 342610 CDS YP_659829.1 109896574 4173990 285140..286486 1 NC_008228.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase-like cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; KEGG: vfi:VF0265 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 286486 4173990 Patl_0243 Pseudoalteromonas atlantica T6c UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_659829.1 285140 D 342610 CDS YP_659830.1 109896575 4173991 286546..287316 1 NC_008228.1 PFAM: S1/P1 nuclease; KEGG: pha:PSHAb0342 putative S1/P1 nuclease; S1/P1 nuclease 287316 4173991 Patl_0244 Pseudoalteromonas atlantica T6c S1/P1 nuclease YP_659830.1 286546 D 342610 CDS YP_659831.1 109896576 4173992 complement(287391..288458) 1 NC_008228.1 KEGG: vfi:VF2402 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase 288458 4173992 Patl_0245 Pseudoalteromonas atlantica T6c uroporphyrinogen decarboxylase YP_659831.1 287391 R 342610 CDS YP_659832.1 109896577 4173993 complement(288710..289525) 1 NC_008228.1 PFAM: NUDIX hydrolase; KEGG: ilo:IL2307 NUDIX family pyrophosphohydrolases containing a Zn-finger; NUDIX hydrolase 289525 4173993 Patl_0246 Pseudoalteromonas atlantica T6c NUDIX hydrolase YP_659832.1 288710 R 342610 CDS YP_659833.1 109896578 4173994 289860..290291 1 NC_008228.1 PFAM: ferric-uptake regulator; KEGG: pha:PSHAa0493 zinc uptake regulation protein; ferric uptake regulator family protein 290291 4173994 Patl_0247 Pseudoalteromonas atlantica T6c ferric uptake regulator family protein YP_659833.1 289860 D 342610 CDS YP_659834.1 109896579 4173995 290341..290805 1 NC_008228.1 PFAM: CheC-like protein; KEGG: ilo:IL1932 chemotaxis protein CheX; CheC-like protein 290805 4173995 Patl_0248 Pseudoalteromonas atlantica T6c CheC-like protein YP_659834.1 290341 D 342610 CDS YP_659835.1 109896580 4173996 290795..291232 1 NC_008228.1 PFAM: protein of unknown function UPF0047; KEGG: vpa:VP2732 hypothetical protein; hypothetical protein 291232 4173996 Patl_0249 Pseudoalteromonas atlantica T6c hypothetical protein YP_659835.1 290795 D 342610 CDS YP_659836.1 109896581 4173997 291321..292427 1 NC_008228.1 PFAM: Thrombospondin type 3 repeat OmpA/MotB OmpF; KEGG: cps:CPS_0958 OmpA family protein; OmpA/MotB protein 292427 4173997 Patl_0250 Pseudoalteromonas atlantica T6c OmpA/MotB protein YP_659836.1 291321 D 342610 CDS YP_659837.1 109896582 4173998 complement(292531..293967) 1 NC_008228.1 KEGG: son:SO3917 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB-like helicase-like; SMART: ATPase; replicative DNA helicase 293967 4173998 Patl_0251 Pseudoalteromonas atlantica T6c replicative DNA helicase YP_659837.1 292531 R 342610 CDS YP_659838.1 109896583 4173999 complement(294077..295885) 1 NC_008228.1 TIGRFAM: ATP-dependent DNA helicase, RecQ family ATP-dependent DNA helicase RecQ; PFAM: helicase-like HRDC DEAD/DEAH box helicase-like; KEGG: pha:PSHAa2572 ATP-dependent DNA helicase; ATP-dependent DNA helicase RecQ 295885 4173999 Patl_0252 Pseudoalteromonas atlantica T6c ATP-dependent DNA helicase RecQ YP_659838.1 294077 R 342610 CDS YP_659839.1 109896584 4174000 296014..296487 1 NC_008228.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily; KEGG: pha:PSHAa2571 hypothetical protein; hypothetical protein 296487 4174000 Patl_0253 Pseudoalteromonas atlantica T6c hypothetical protein YP_659839.1 296014 D 342610 CDS YP_659840.1 109896585 4174001 complement(296594..297028) 1 NC_008228.1 PFAM: globin; KEGG: hch:HCH_01422 truncated hemoglobin; globin 297028 4174001 Patl_0254 Pseudoalteromonas atlantica T6c globin YP_659840.1 296594 R 342610 CDS YP_659841.1 109896586 4174002 complement(297028..297876) 1 NC_008228.1 KEGG: hch:HCH_01423 hypothetical protein; hypothetical protein 297876 4174002 Patl_0255 Pseudoalteromonas atlantica T6c hypothetical protein YP_659841.1 297028 R 342610 CDS YP_659842.1 109896587 4174003 complement(297866..300202) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: hch:HCH_01424 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain; diguanylate cyclase/phosphodiesterase 300202 4174003 Patl_0256 Pseudoalteromonas atlantica T6c diguanylate cyclase/phosphodiesterase YP_659842.1 297866 R 342610 CDS YP_659843.1 109896588 4174004 complement(300203..300925) 1 NC_008228.1 KEGG: pha:PSHAa0455 hypothetical protein; hypothetical protein 300925 4174004 Patl_0257 Pseudoalteromonas atlantica T6c hypothetical protein YP_659843.1 300203 R 342610 CDS YP_659844.1 109896589 4174005 301220..301822 1 NC_008228.1 KEGG: pha:PSHAa2575 hypothetical protein; hypothetical protein 301822 4174005 Patl_0258 Pseudoalteromonas atlantica T6c hypothetical protein YP_659844.1 301220 D 342610 CDS YP_659845.1 109896590 4174006 301976..302893 1 NC_008228.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pha:PSHAa0358 hypothetical protein; mechanosensitive ion channel protein MscS 302893 4174006 Patl_0259 Pseudoalteromonas atlantica T6c mechanosensitive ion channel protein MscS YP_659845.1 301976 D 342610 CDS YP_659846.1 109896591 4174007 303017..304756 1 NC_008228.1 PFAM: surface antigen (D15); KEGG: pha:PSHAa1983 outer membrane protein; surface antigen (D15) 304756 4174007 Patl_0260 Pseudoalteromonas atlantica T6c surface antigen (D15) YP_659846.1 303017 D 342610 CDS YP_659847.1 109896592 4171940 304753..308532 1 NC_008228.1 PFAM: protein of unknown function DUF490; KEGG: vvu:VV10711 hypothetical protein; hypothetical protein 308532 4171940 Patl_0261 Pseudoalteromonas atlantica T6c hypothetical protein YP_659847.1 304753 D 342610 CDS YP_659848.1 109896593 4171941 308799..310136 1 NC_008228.1 PFAM: CBS domain containing protein MgtE integral membrane region MgtE intracellular region; KEGG: pha:PSHAa0712 magnesium transporter; MgtE integral membrane protein 310136 4171941 Patl_0262 Pseudoalteromonas atlantica T6c MgtE integral membrane protein YP_659848.1 308799 D 342610 CDS YP_659849.1 109896594 4171942 310347..310526 1 NC_008228.1 PFAM: protein of unknown function DUF1328; KEGG: rru:Rru_A0119 protein of unknown function DUF1328; hypothetical protein 310526 4171942 Patl_0263 Pseudoalteromonas atlantica T6c hypothetical protein YP_659849.1 310347 D 342610 CDS YP_659850.1 109896595 4171943 310695..311258 1 NC_008228.1 PFAM: transport-associated; KEGG: vpa:VP0081 putative hyperosmotically inducible periplasmic protein; transport-associated protein 311258 4171943 Patl_0264 Pseudoalteromonas atlantica T6c transport-associated protein YP_659850.1 310695 D 342610 CDS YP_659851.1 109896596 4171944 311580..312512 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein response regulator receiver; KEGG: hch:HCH_00862 response regulator containing a CheY-like receiver domain and a GGDEF domain; diguanylate cyclase 312512 4171944 Patl_0265 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_659851.1 311580 D 342610 CDS YP_659852.1 109896597 4171945 complement(312664..313947) 1 NC_008228.1 KEGG: vpa:VP2898 phosphoribosylamine-glycine ligase; TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase protein of unknown function DUF201; phosphoribosylamine--glycine ligase 313947 4171945 Patl_0266 Pseudoalteromonas atlantica T6c phosphoribosylamine--glycine ligase YP_659852.1 312664 R 342610 CDS YP_659853.1 109896598 4171946 complement(314049..314855) 1 NC_008228.1 KEGG: pha:PSHAa0344 hypothetical protein; hypothetical protein 314855 4171946 Patl_0267 Pseudoalteromonas atlantica T6c hypothetical protein YP_659853.1 314049 R 342610 CDS YP_659854.1 109896599 4171947 complement(315013..316635) 1 NC_008228.1 KEGG: vpa:VP2896 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme MGS-like; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 316635 4171947 Patl_0268 Pseudoalteromonas atlantica T6c phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_659854.1 315013 R 342610 CDS YP_659855.1 109896600 4171948 complement(316735..317028) 1 NC_008228.1 PFAM: helix-turn-helix, Fis-type; KEGG: pha:PSHAa0346 DNA-binding protein; Fis-type helix-turn-helix domain-containing protein 317028 4171948 Patl_0269 Pseudoalteromonas atlantica T6c Fis-type helix-turn-helix domain-containing protein YP_659855.1 316735 R 342610 CDS YP_659856.1 109896601 4171949 complement(317058..318059) 1 NC_008228.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: pha:PSHAa0347 tRNA-dihydrouridine synthase B; nifR3 family TIM-barrel protein 318059 4171949 Patl_0270 Pseudoalteromonas atlantica T6c nifR3 family TIM-barrel protein YP_659856.1 317058 R 342610 CDS YP_659857.1 109896602 4171950 complement(318371..318676) 1 NC_008228.1 KEGG: pha:PSHAa1272 hypothetical protein; hypothetical protein 318676 4171950 Patl_0271 Pseudoalteromonas atlantica T6c hypothetical protein YP_659857.1 318371 R 342610 CDS YP_659858.1 109896603 4171951 318844..319689 1 NC_008228.1 PFAM: Thioredoxin domain; KEGG: ilo:IL1994 thioredoxin domain-containing protein; thioredoxin domain-containing protein 319689 4171951 Patl_0272 Pseudoalteromonas atlantica T6c thioredoxin domain-containing protein YP_659858.1 318844 D 342610 CDS YP_659859.1 109896604 4171952 complement(319825..320709) 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pha:PSHAa1830 transcriptional regulator with periplasmic binding protein domain (LysR); LysR family transcriptional regulator 320709 4171952 Patl_0273 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_659859.1 319825 R 342610 CDS YP_659860.1 109896605 4171953 320842..321492 1 NC_008228.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: pha:PSHAa1831 AhpC-TSA; redoxin 321492 4171953 Patl_0274 Pseudoalteromonas atlantica T6c redoxin YP_659860.1 320842 D 342610 CDS YP_659861.1 109896606 4171954 321604..322287 1 NC_008228.1 TIGRFAM: haloacid dehalogenase, type II HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like) HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: pha:PSHAa1832 cryptic haloacid dehalogenase 1 (partial); haloacid dehalogenase 322287 4171954 Patl_0275 Pseudoalteromonas atlantica T6c haloacid dehalogenase YP_659861.1 321604 D 342610 CDS YP_659862.1 109896607 4171955 322466..323392 1 NC_008228.1 KEGG: psb:Psyr_4383 esterase/lipase/thioesterase family protein; esterase/lipase/thioesterase family protein 323392 4171955 Patl_0276 Pseudoalteromonas atlantica T6c esterase/lipase/thioesterase family protein YP_659862.1 322466 D 342610 CDS YP_659863.1 109896608 4171956 323423..324010 1 NC_008228.1 PFAM: pentapeptide repeat; KEGG: son:SO4064 mcbg protein, putative; pentapeptide repeat-containing protein 324010 4171956 Patl_0277 Pseudoalteromonas atlantica T6c pentapeptide repeat-containing protein YP_659863.1 323423 D 342610 CDS YP_659864.1 109896609 4171957 324848..325192 1 NC_008228.1 hypothetical protein 325192 4171957 Patl_0278 Pseudoalteromonas atlantica T6c hypothetical protein YP_659864.1 324848 D 342610 CDS YP_659865.1 109896610 4171958 325456..326493 1 NC_008228.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: son:SO1583 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase 326493 4171958 Patl_0279 Pseudoalteromonas atlantica T6c succinylglutamate desuccinylase/aspartoacylase YP_659865.1 325456 D 342610 CDS YP_659866.1 109896611 4171959 326636..327058 1 NC_008228.1 KEGG: dps:DP1414 hypothetical protein; hypothetical protein 327058 4171959 Patl_0280 Pseudoalteromonas atlantica T6c hypothetical protein YP_659866.1 326636 D 342610 CDS YP_659867.1 109896612 4172914 327084..327299 1 NC_008228.1 TIGRFAM: tryptophan-rich Ignore; KEGG: ilo:IL0283 hypothetical protein; hypothetical protein 327299 4172914 Patl_0281 Pseudoalteromonas atlantica T6c hypothetical protein YP_659867.1 327084 D 342610 CDS YP_659868.1 109896613 4172915 327666..329345 1 NC_008228.1 KEGG: xac:XAC1528 toxin secretion ABC transporter ATP-binding protein; toxin secretion ABC transporter ATP-binding protein 329345 4172915 Patl_0282 Pseudoalteromonas atlantica T6c toxin secretion ABC transporter ATP-binding protein YP_659868.1 327666 D 342610 CDS YP_659869.1 109896614 4172916 329338..330366 1 NC_008228.1 KEGG: xcv:XCV1570 membrane fusion protein; membrane fusion protein 330366 4172916 Patl_0283 Pseudoalteromonas atlantica T6c membrane fusion protein YP_659869.1 329338 D 342610 CDS YP_659870.1 109896615 4172917 330366..331781 1 NC_008228.1 KEGG: xcv:XCV1569 outer membrane efflux protein; Outer membrane protein-like 331781 4172917 Patl_0284 Pseudoalteromonas atlantica T6c Outer membrane protein-like YP_659870.1 330366 D 342610 CDS YP_659871.1 109896616 4172918 complement(331820..332266) 1 NC_008228.1 hypothetical protein 332266 4172918 Patl_0285 Pseudoalteromonas atlantica T6c hypothetical protein YP_659871.1 331820 R 342610 CDS YP_659872.1 109896617 4172919 complement(332361..333713) 1 NC_008228.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 333713 4172919 Patl_0286 Pseudoalteromonas atlantica T6c glutamate dehydrogenase YP_659872.1 332361 R 342610 CDS YP_659873.1 109896618 4172920 complement(333758..334144) 1 NC_008228.1 PFAM: transcription elongation factor GreA/GreB region; KEGG: ilo:IL0629 transcription elongation factor family protein; GreA/GreB family elongation factor 334144 4172920 Patl_0287 Pseudoalteromonas atlantica T6c GreA/GreB family elongation factor YP_659873.1 333758 R 342610 CDS YP_659874.1 109896619 4172921 complement(334620..335567) 1 NC_008228.1 hypothetical protein 335567 4172921 Patl_0288 Pseudoalteromonas atlantica T6c hypothetical protein YP_659874.1 334620 R 342610 CDS YP_659875.1 109896620 4172922 complement(335571..337343) 1 NC_008228.1 PFAM: Na+/solute symporter; KEGG: vpa:VPA0087 putative transporter; Na+/solute symporter 337343 4172922 Patl_0289 Pseudoalteromonas atlantica T6c Na+/solute symporter YP_659875.1 335571 R 342610 CDS YP_659876.1 109896621 4172923 complement(337355..338494) 1 NC_008228.1 PFAM: oxidoreductase-like; KEGG: bcl:ABC0577 oxidoreductase; oxidoreductase-like protein 338494 4172923 Patl_0290 Pseudoalteromonas atlantica T6c oxidoreductase-like protein YP_659876.1 337355 R 342610 CDS YP_659877.1 109896622 4172924 complement(338546..339817) 1 NC_008228.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: rspA; starvation sensing protein RspA; mandelate racemase/muconate lactonizing-like protein 339817 4172924 Patl_0291 Pseudoalteromonas atlantica T6c mandelate racemase/muconate lactonizing-like protein YP_659877.1 338546 R 342610 CDS YP_659878.1 109896623 4172925 339963..340988 1 NC_008228.1 PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: bcl:ABC3358 transcriptional regulator, LacI family; LacI family transcriptional regulator 340988 4172925 Patl_0292 Pseudoalteromonas atlantica T6c LacI family transcriptional regulator YP_659878.1 339963 D 342610 CDS YP_659879.1 109896624 4172926 complement(341181..343094) 1 NC_008228.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: hch:HCH_06292 choline-glycine betaine transporter; choline/carnitine/betaine transporter 343094 4172926 Patl_0293 Pseudoalteromonas atlantica T6c choline/carnitine/betaine transporter YP_659879.1 341181 R 342610 CDS YP_659880.1 109896625 4172927 complement(343545..344942) 1 NC_008228.1 KEGG: cps:CPS_1901 putative lipoprotein; putative lipoprotein 344942 4172927 Patl_0294 Pseudoalteromonas atlantica T6c putative lipoprotein YP_659880.1 343545 R 342610 CDS YP_659881.1 109896626 4172928 complement(344976..347369) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_1902 TonB-dependent receptor; TonB-dependent receptor 347369 4172928 Patl_0295 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_659881.1 344976 R 342610 CDS YP_659882.1 109896627 4172929 347587..348264 1 NC_008228.1 KEGG: vvu:VV10717 hypothetical protein; hypothetical protein 348264 4172929 Patl_0296 Pseudoalteromonas atlantica T6c hypothetical protein YP_659882.1 347587 D 342610 CDS YP_659883.1 109896628 4172930 348267..348746 1 NC_008228.1 PFAM: ferric-uptake regulator; KEGG: hch:HCH_01703 Fe2+/Zn2+ uptake regulation protein; ferric uptake regulator family protein 348746 4172930 Patl_0297 Pseudoalteromonas atlantica T6c ferric uptake regulator family protein YP_659883.1 348267 D 342610 CDS YP_659884.1 109896629 4172931 348754..349164 1 NC_008228.1 KEGG: cps:CPS_1818 hypothetical protein; hypothetical protein 349164 4172931 Patl_0298 Pseudoalteromonas atlantica T6c hypothetical protein YP_659884.1 348754 D 342610 CDS YP_659885.1 109896630 4172932 349169..350416 1 NC_008228.1 PFAM: cobalamin synthesis protein, P47K cobalamin synthesis CobW-like; KEGG: cps:CPS_1815 cobalamin synthesis protein/P47K family protein; cobalamin synthesis protein, P47K 350416 4172932 Patl_0299 Pseudoalteromonas atlantica T6c cobalamin synthesis protein, P47K YP_659885.1 349169 D 342610 CDS YP_659886.1 109896631 4172894 350413..351114 1 NC_008228.1 KEGG: cps:CPS_1816 hypothetical protein; hypothetical protein 351114 4172894 Patl_0300 Pseudoalteromonas atlantica T6c hypothetical protein YP_659886.1 350413 D 342610 CDS YP_659887.1 109896632 4172895 351274..352194 1 NC_008228.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; putative GTP cyclohydrolase 352194 4172895 Patl_0301 Pseudoalteromonas atlantica T6c putative GTP cyclohydrolase YP_659887.1 351274 D 342610 CDS YP_659888.1 109896633 4172896 352178..353173 1 NC_008228.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: vvy:VVA0896 hypothetical protein; endonuclease/exonuclease/phosphatase 353173 4172896 Patl_0302 Pseudoalteromonas atlantica T6c endonuclease/exonuclease/phosphatase YP_659888.1 352178 D 342610 CDS YP_659889.1 109896634 4172897 complement(353189..353848) 1 NC_008228.1 KEGG: cps:CPS_1814 hypothetical protein; hypothetical protein 353848 4172897 Patl_0303 Pseudoalteromonas atlantica T6c hypothetical protein YP_659889.1 353189 R 342610 CDS YP_659890.1 109896635 4172898 complement(353934..354473) 1 NC_008228.1 hypothetical protein 354473 4172898 Patl_0304 Pseudoalteromonas atlantica T6c hypothetical protein YP_659890.1 353934 R 342610 CDS YP_659891.1 109896636 4172899 complement(354474..355055) 1 NC_008228.1 KEGG: cps:CPS_1814 hypothetical protein; hypothetical protein 355055 4172899 Patl_0305 Pseudoalteromonas atlantica T6c hypothetical protein YP_659891.1 354474 R 342610 CDS YP_659892.1 109896637 4172900 355161..356015 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: cps:CPS_1813 ABC transporter, ATP-binding protein; ABC transporter-like protein 356015 4172900 Patl_0306 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_659892.1 355161 D 342610 CDS YP_659893.1 109896638 4172901 356009..357241 1 NC_008228.1 PFAM: protein of unknown function DUF214; KEGG: cps:CPS_1812 putative permease; hypothetical protein 357241 4172901 Patl_0307 Pseudoalteromonas atlantica T6c hypothetical protein YP_659893.1 356009 D 342610 CDS YP_659894.1 109896639 4172902 complement(357305..357682) 1 NC_008228.1 KEGG: ilo:IL2128 predicted flavoprotein; flavoprotein 357682 4172902 Patl_0308 Pseudoalteromonas atlantica T6c flavoprotein YP_659894.1 357305 R 342610 CDS YP_659895.1 109896640 4172903 complement(357969..358229) 1 NC_008228.1 KEGG: pha:PSHAa1603 hypothetical protein; hypothetical protein 358229 4172903 Patl_0309 Pseudoalteromonas atlantica T6c hypothetical protein YP_659895.1 357969 R 342610 CDS YP_659896.1 109896641 4172904 358477..359523 1 NC_008228.1 PFAM: beta-lactamase-like; KEGG: bbr:BB4943 metallo-beta-lactamase family protein; beta-lactamase-like protein 359523 4172904 Patl_0310 Pseudoalteromonas atlantica T6c beta-lactamase-like protein YP_659896.1 358477 D 342610 CDS YP_659897.1 109896642 4172905 complement(359646..361739) 1 NC_008228.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: nar:Saro_1823 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 361739 4172905 Patl_0311 Pseudoalteromonas atlantica T6c TonB-dependent siderophore receptor YP_659897.1 359646 R 342610 CDS YP_659898.1 109896643 4172906 362341..362946 1 NC_008228.1 hypothetical protein 362946 4172906 Patl_0312 Pseudoalteromonas atlantica T6c hypothetical protein YP_659898.1 362341 D 342610 CDS YP_659899.1 109896644 4172907 362950..364440 1 NC_008228.1 PFAM: PepSY-associated TM helix; KEGG: pfo:Pfl_0927 aspartate kinase; PepSY-associated TM helix-containing protein 364440 4172907 Patl_0313 Pseudoalteromonas atlantica T6c PepSY-associated TM helix-containing protein YP_659899.1 362950 D 342610 CDS YP_659900.1 109896645 4172908 complement(364502..365470) 1 NC_008228.1 PFAM: helix-turn-helix, AraC type; KEGG: hch:HCH_00884 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; AraC family transcriptional regulator 365470 4172908 Patl_0314 Pseudoalteromonas atlantica T6c AraC family transcriptional regulator YP_659900.1 364502 R 342610 CDS YP_659901.1 109896646 4172909 365581..366756 1 NC_008228.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: pfo:Pfl_3948 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase-like protein 366756 4172909 Patl_0315 Pseudoalteromonas atlantica T6c acyl-CoA dehydrogenase-like protein YP_659901.1 365581 D 342610 CDS YP_659902.1 109896647 4172910 366862..367824 1 NC_008228.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: dar:Daro_1554 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 367824 4172910 Patl_0316 Pseudoalteromonas atlantica T6c 2-nitropropane dioxygenase YP_659902.1 366862 D 342610 CDS YP_659903.1 109896648 4172911 367885..369498 1 NC_008228.1 PFAM: carboxyl transferase; KEGG: pae:PA2888 propionyl-CoA carboxylase beta chain; carboxyl transferase 369498 4172911 Patl_0317 Pseudoalteromonas atlantica T6c carboxyl transferase YP_659903.1 367885 D 342610 CDS YP_659904.1 109896649 4172912 369583..370395 1 NC_008228.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pae:PA2890 probable enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 370395 4172912 Patl_0318 Pseudoalteromonas atlantica T6c enoyl-CoA hydratase/isomerase YP_659904.1 369583 D 342610 CDS YP_659905.1 109896650 4172913 370438..372507 1 NC_008228.1 PFAM: biotin/lipoyl attachment Carbamoyl-phosphate synthase L chain, ATP-binding Carbamoyl-phosphate synthetase large chain-like biotin carboxylase-like; KEGG: hch:HCH_05752 acetyl/propionyl-CoA carboxylase, alpha subunit; carbamoyl-phosphate synthase subunit L 372507 4172913 Patl_0319 Pseudoalteromonas atlantica T6c carbamoyl-phosphate synthase subunit L YP_659905.1 370438 D 342610 CDS YP_659906.1 109896651 4173142 372520..374331 1 NC_008228.1 PFAM: protein of unknown function DUF1446; KEGG: hch:HCH_05745 predicted ATPase; hypothetical protein 374331 4173142 Patl_0320 Pseudoalteromonas atlantica T6c hypothetical protein YP_659906.1 372520 D 342610 CDS YP_659907.1 109896652 4173143 374405..375277 1 NC_008228.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pfl:PFL_4195 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 375277 4173143 Patl_0321 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_659907.1 374405 D 342610 CDS YP_659908.1 109896653 4173144 375310..376905 1 NC_008228.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rpb:RPB_3261 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 376905 4173144 Patl_0322 Pseudoalteromonas atlantica T6c AMP-dependent synthetase and ligase YP_659908.1 375310 D 342610 CDS YP_659909.1 109896654 4173145 complement(377376..378887) 1 NC_008228.1 KEGG: cch:Cag_0738 VCBS; hypothetical protein 378887 4173145 Patl_0323 Pseudoalteromonas atlantica T6c hypothetical protein YP_659909.1 377376 R 342610 CDS YP_659910.1 109896655 4173147 380844..381410 1 NC_008228.1 hypothetical protein 381410 4173147 Patl_0325 Pseudoalteromonas atlantica T6c hypothetical protein YP_659910.1 380844 D 342610 CDS YP_659911.1 109896656 4173148 complement(381516..381950) 1 NC_008228.1 hypothetical protein 381950 4173148 Patl_0326 Pseudoalteromonas atlantica T6c hypothetical protein YP_659911.1 381516 R 342610 CDS YP_659912.1 109896657 4173149 complement(381964..382518) 1 NC_008228.1 TIGRFAM: deoxycytidine triphosphate deaminase; PFAM: deoxyUTP pyrophosphatase; KEGG: mst:Msp_1048 deoxycytidine triphosphate deaminase; deoxycytidine triphosphate deaminase 382518 4173149 Patl_0327 Pseudoalteromonas atlantica T6c deoxycytidine triphosphate deaminase YP_659912.1 381964 R 342610 CDS YP_659913.1 109896658 4173150 complement(382505..383959) 1 NC_008228.1 hypothetical protein 383959 4173150 Patl_0328 Pseudoalteromonas atlantica T6c hypothetical protein YP_659913.1 382505 R 342610 CDS YP_659914.1 109896659 4173151 complement(383970..384455) 1 NC_008228.1 hypothetical protein 384455 4173151 Patl_0329 Pseudoalteromonas atlantica T6c hypothetical protein YP_659914.1 383970 R 342610 CDS YP_659915.1 109896660 4173153 384766..385071 1 NC_008228.1 hypothetical protein 385071 4173153 Patl_0330 Pseudoalteromonas atlantica T6c hypothetical protein YP_659915.1 384766 D 342610 CDS YP_659916.1 109896661 4173154 385210..386595 1 NC_008228.1 PFAM: protein of unknown function DUF839; KEGG: ccr:CC1375 hypothetical protein; hypothetical protein 386595 4173154 Patl_0331 Pseudoalteromonas atlantica T6c hypothetical protein YP_659916.1 385210 D 342610 CDS YP_659917.1 109896662 4173155 complement(386770..387990) 1 NC_008228.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: xcv:XCV1601 hypothetical protein; N-acylglucosamine 2-epimerase 387990 4173155 Patl_0332 Pseudoalteromonas atlantica T6c N-acylglucosamine 2-epimerase YP_659917.1 386770 R 342610 CDS YP_659918.1 109896663 4173156 complement(388003..389298) 1 NC_008228.1 KEGG: tth:TTC0614 hypothetical protein; hypothetical protein 389298 4173156 Patl_0333 Pseudoalteromonas atlantica T6c hypothetical protein YP_659918.1 388003 R 342610 CDS YP_659919.1 109896664 4173157 389502..391949 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3961 TonB-dependent receptor; TonB-dependent receptor 391949 4173157 Patl_0334 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_659919.1 389502 D 342610 CDS YP_659920.1 109896665 4173158 392102..393682 1 NC_008228.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: rba:RB7512 putative integral membrane transport protein; SSS family solute/sodium (Na+) symporter 393682 4173158 Patl_0335 Pseudoalteromonas atlantica T6c SSS family solute/sodium (Na+) symporter YP_659920.1 392102 D 342610 CDS YP_659921.1 109896666 4173159 393692..394930 1 NC_008228.1 PFAM: MOFRL; KEGG: pfl:PFL_1698 hydroxypyruvate reductase, putative; hydroxypyruvate reductase 394930 4173159 Patl_0336 Pseudoalteromonas atlantica T6c hydroxypyruvate reductase YP_659921.1 393692 D 342610 CDS YP_659922.1 109896667 4173160 395040..396245 1 NC_008228.1 PFAM: ROK domain containing protein; KEGG: xcb:XC_4142 transcriptional regulator; ROK domain-containing protein 396245 4173160 Patl_0337 Pseudoalteromonas atlantica T6c ROK domain-containing protein YP_659922.1 395040 D 342610 CDS YP_659923.1 109896668 4173161 complement(396334..397353) 1 NC_008228.1 PFAM: cyclic-AMP phosphodiesterase, class-II; KEGG: vfi:VF1256 3',5'-cyclic-nucleotide phosphodiesterase; cyclic-AMP phosphodiesterase 397353 4173161 Patl_0338 Pseudoalteromonas atlantica T6c cyclic-AMP phosphodiesterase YP_659923.1 396334 R 342610 CDS YP_659924.1 109896669 4173162 complement(397355..398536) 1 NC_008228.1 PFAM: HemY-like; KEGG: vch:VC0117 HemY protein; HemY-like protein 398536 4173162 Patl_0339 Pseudoalteromonas atlantica T6c HemY-like protein YP_659924.1 397355 R 342610 CDS YP_659925.1 109896670 4173163 complement(398533..399909) 1 NC_008228.1 PFAM: protein of unknown function DUF513, hemX; KEGG: ppr:PBPRA3530 hypothetical uroporphyrin-III C-methyltransferase; hypothetical protein 399909 4173163 Patl_0340 Pseudoalteromonas atlantica T6c hypothetical protein YP_659925.1 398533 R 342610 CDS YP_659926.1 109896671 4173164 complement(399910..400632) 1 NC_008228.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: vch:VC0119 uroporphyrinogen-III synthase; uroporphyrinogen III synthase HEM4 400632 4173164 Patl_0341 Pseudoalteromonas atlantica T6c uroporphyrinogen III synthase HEM4 YP_659926.1 399910 R 342610 CDS YP_659927.1 109896672 4173165 complement(400636..401565) 1 NC_008228.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 401565 hemC 4173165 hemC Pseudoalteromonas atlantica T6c porphobilinogen deaminase YP_659927.1 400636 R 342610 CDS YP_659928.1 109896673 4173166 complement(401752..402231) 1 NC_008228.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_06509 histone acetyltransferase HPA2/related acetyltransferase; N-acetyltransferase GCN5 402231 4173166 Patl_0343 Pseudoalteromonas atlantica T6c N-acetyltransferase GCN5 YP_659928.1 401752 R 342610 CDS YP_659929.1 109896674 4173167 complement(402259..402738) 1 NC_008228.1 PFAM: YHS; KEGG: vvy:VV0794 hypothetical protein; YHS domain-containing protein 402738 4173167 Patl_0344 Pseudoalteromonas atlantica T6c YHS domain-containing protein YP_659929.1 402259 R 342610 CDS YP_659930.1 109896675 4173168 complement(402912..403583) 1 NC_008228.1 PFAM: phospholipase/Carboxylesterase; KEGG: pha:PSHAa0096 hypothetical protein; carboxylesterase 403583 4173168 Patl_0345 Pseudoalteromonas atlantica T6c carboxylesterase YP_659930.1 402912 R 342610 CDS YP_659931.1 109896676 4173169 complement(403630..403956) 1 NC_008228.1 PFAM: Frataxin-like; KEGG: pha:PSHAa0095 iron scavenging protein; frataxin family protein 403956 4173169 Patl_0346 Pseudoalteromonas atlantica T6c frataxin family protein YP_659931.1 403630 R 342610 CDS YP_659932.1 109896677 4173170 404076..404723 1 NC_008228.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 404723 gmk 4173170 gmk Pseudoalteromonas atlantica T6c guanylate kinase YP_659932.1 404076 D 342610 CDS YP_659933.1 109896678 4173171 404828..405100 1 NC_008228.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 405100 rpoZ 4173171 rpoZ Pseudoalteromonas atlantica T6c DNA-directed RNA polymerase subunit omega YP_659933.1 404828 D 342610 CDS YP_659934.1 109896679 4173172 405241..407370 1 NC_008228.1 KEGG: cps:CPS_4973 guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: TGS metal-dependent phosphohydrolase, HD subdomain RelA/SpoT; SMART: Metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 407370 4173172 Patl_0349 Pseudoalteromonas atlantica T6c metal dependent phosphohydrolase YP_659934.1 405241 D 342610 CDS YP_659935.1 109896680 4173173 407392..407778 1 NC_008228.1 TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: ilo:IL2379 endoribonuclease L-PSP family protein; putative endoribonuclease L-PSP 407778 4173173 Patl_0350 Pseudoalteromonas atlantica T6c putative endoribonuclease L-PSP YP_659935.1 407392 D 342610 CDS YP_659936.2 162382313 4173174 407972..408724 1 NC_008228.1 specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 408724 4173174 Patl_0351 Pseudoalteromonas atlantica T6c tRNA guanosine-2'-O-methyltransferase YP_659936.2 407972 D 342610 CDS YP_659937.1 109896682 4173175 408761..409405 1 NC_008228.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: son:SO1381 hypothetical protein; redoxin 409405 4173175 Patl_0352 Pseudoalteromonas atlantica T6c redoxin YP_659937.1 408761 D 342610 CDS YP_659938.1 109896683 4173176 409608..411683 1 NC_008228.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 411683 4173176 Patl_0353 Pseudoalteromonas atlantica T6c ATP-dependent DNA helicase RecG YP_659938.1 409608 D 342610 CDS YP_659939.1 109896684 4173177 411676..412524 1 NC_008228.1 PFAM: protein of unknown function DUF548; KEGG: ppr:PBPRA3533 conserved hypothetical protein; hypothetical protein 412524 4173177 Patl_0354 Pseudoalteromonas atlantica T6c hypothetical protein YP_659939.1 411676 D 342610 CDS YP_659940.1 109896685 4173178 412575..412970 1 NC_008228.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vpa:VP1864 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 412970 4173178 Patl_0355 Pseudoalteromonas atlantica T6c glyoxalase/bleomycin resistance protein/dioxygenase YP_659940.1 412575 D 342610 CDS YP_659941.1 109896686 4173179 413007..413486 1 NC_008228.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: vvy:VVA1236 peroxiredoxin; redoxin 413486 4173179 Patl_0356 Pseudoalteromonas atlantica T6c redoxin YP_659941.1 413007 D 342610 CDS YP_659942.1 109896687 4173950 complement(413526..415112) 1 NC_008228.1 KEGG: gvi:glr0437 unknown protein; hypothetical protein 415112 4173950 Patl_0357 Pseudoalteromonas atlantica T6c hypothetical protein YP_659942.1 413526 R 342610 CDS YP_659943.1 109896688 4173951 complement(415114..416025) 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sru:SRU_0147 ABC transporter ATP-binding protein; ABC transporter-like protein 416025 4173951 Patl_0358 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_659943.1 415114 R 342610 CDS YP_659944.1 109896689 4173952 416249..416995 1 NC_008228.1 PFAM: regulatory protein, LuxR Autoinducer-binding; KEGG: nmu:Nmul_A2417 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 416995 4173952 Patl_0359 Pseudoalteromonas atlantica T6c LuxR family transcriptional regulator YP_659944.1 416249 D 342610 CDS YP_659945.1 109896690 4173953 complement(416992..417951) 1 NC_008228.1 hypothetical protein 417951 4173953 Patl_0360 Pseudoalteromonas atlantica T6c hypothetical protein YP_659945.1 416992 R 342610 CDS YP_659946.1 109896691 4173954 418168..418761 1 NC_008228.1 PFAM: autoinducer synthesis protein; KEGG: vfi:VFA0924 LuxI, autoinducer synthesis protein; autoinducer synthesis protein 418761 4173954 Patl_0361 Pseudoalteromonas atlantica T6c autoinducer synthesis protein YP_659946.1 418168 D 342610 CDS YP_659947.1 109896692 4173955 complement(419352..419558) 1 NC_008228.1 hypothetical protein 419558 4173955 Patl_0362 Pseudoalteromonas atlantica T6c hypothetical protein YP_659947.1 419352 R 342610 CDS YP_659948.1 109896693 4173956 complement(419607..419822) 1 NC_008228.1 hypothetical protein 419822 4173956 Patl_0363 Pseudoalteromonas atlantica T6c hypothetical protein YP_659948.1 419607 R 342610 CDS YP_659949.1 109896694 4173957 complement(419849..420064) 1 NC_008228.1 hypothetical protein 420064 4173957 Patl_0364 Pseudoalteromonas atlantica T6c hypothetical protein YP_659949.1 419849 R 342610 CDS YP_659950.1 109896695 4173958 complement(420091..420306) 1 NC_008228.1 hypothetical protein 420306 4173958 Patl_0365 Pseudoalteromonas atlantica T6c hypothetical protein YP_659950.1 420091 R 342610 CDS YP_659951.1 109896696 4173959 complement(420333..420548) 1 NC_008228.1 hypothetical protein 420548 4173959 Patl_0366 Pseudoalteromonas atlantica T6c hypothetical protein YP_659951.1 420333 R 342610 CDS YP_659952.1 109896697 4173960 complement(420575..420790) 1 NC_008228.1 hypothetical protein 420790 4173960 Patl_0367 Pseudoalteromonas atlantica T6c hypothetical protein YP_659952.1 420575 R 342610 CDS YP_659953.1 109896698 4173961 complement(420897..422156) 1 NC_008228.1 hypothetical protein 422156 4173961 Patl_0368 Pseudoalteromonas atlantica T6c hypothetical protein YP_659953.1 420897 R 342610 CDS YP_659954.1 109896699 4173962 422332..423621 1 NC_008228.1 hypothetical protein 423621 4173962 Patl_0369 Pseudoalteromonas atlantica T6c hypothetical protein YP_659954.1 422332 D 342610 CDS YP_659955.1 109896700 4173963 423632..424531 1 NC_008228.1 KEGG: bcl:ABC3232 hypothetical protein; hypothetical protein 424531 4173963 Patl_0370 Pseudoalteromonas atlantica T6c hypothetical protein YP_659955.1 423632 D 342610 CDS YP_659956.1 109896701 4173964 424816..425034 1 NC_008228.1 KEGG: pha:PSHAa1766 hypothetical protein; hypothetical protein 425034 4173964 Patl_0371 Pseudoalteromonas atlantica T6c hypothetical protein YP_659956.1 424816 D 342610 CDS YP_659957.1 109896702 4173965 425166..425966 1 NC_008228.1 KEGG: hch:HCH_05423 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; hypothetical protein 425966 4173965 Patl_0372 Pseudoalteromonas atlantica T6c hypothetical protein YP_659957.1 425166 D 342610 CDS YP_659958.1 109896703 4173966 426068..426940 1 NC_008228.1 putative metalloprotease; heat shock protein HtpX 426940 4173966 Patl_0373 Pseudoalteromonas atlantica T6c heat shock protein HtpX YP_659958.1 426068 D 342610 CDS YP_659959.1 109896704 4173967 complement(426937..427623) 1 NC_008228.1 PFAM: putative cyclase; KEGG: bha:BH0378 hypothetical protein; putative cyclase 427623 4173967 Patl_0374 Pseudoalteromonas atlantica T6c putative cyclase YP_659959.1 426937 R 342610 CDS YP_659960.1 109896705 4173968 427750..428931 1 NC_008228.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like HI0933-like protein FAD dependent oxidoreductase FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: vfi:VF0086 NAD(FAD)-utilizing dehydrogenases; hypothetical protein 428931 4173968 Patl_0375 Pseudoalteromonas atlantica T6c hypothetical protein YP_659960.1 427750 D 342610 CDS YP_659961.1 109896706 4173467 429709..432060 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_2088 TonB-dependent receptor; TonB-dependent receptor 432060 4173467 Patl_0377 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_659961.1 429709 D 342610 CDS YP_659962.1 109896707 4173468 432193..433590 1 NC_008228.1 PFAM: oxidoreductase FAD/NAD(P)-binding Oxidoreductase FAD-binding region FAD-binding 8 Ferric reductase-like transmembrane component-like; KEGG: ade:Adeh_0299 oxidoreductase FAD/NAD(P)-binding protein; oxidoreductase FAD/NAD(P)-binding protein 433590 4173468 Patl_0378 Pseudoalteromonas atlantica T6c oxidoreductase FAD/NAD(P)-binding protein YP_659962.1 432193 D 342610 CDS YP_659963.1 109896708 4173469 433657..435582 1 NC_008228.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like FAD dependent oxidoreductase FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: afu:AF1463 fumarate reductase flavoprotein subunit; twin-arginine translocation pathway signal protein 435582 4173469 Patl_0379 Pseudoalteromonas atlantica T6c twin-arginine translocation pathway signal protein YP_659963.1 433657 D 342610 CDS YP_659964.1 109896709 4173470 435638..435853 1 NC_008228.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: afu:AF1461 iron-sulfur cluster binding protein, putative; 4Fe-4S ferredoxin 435853 4173470 Patl_0380 Pseudoalteromonas atlantica T6c 4Fe-4S ferredoxin YP_659964.1 435638 D 342610 CDS YP_659965.1 109896710 4173471 435956..436861 1 NC_008228.1 PFAM: regulatory proteins, IclR; KEGG: chy:CHY_1273 transcriptional regulator, IclR family; IclR family transcriptional regulator 436861 4173471 Patl_0381 Pseudoalteromonas atlantica T6c IclR family transcriptional regulator YP_659965.1 435956 D 342610 CDS YP_659966.1 109896711 4173472 436875..438056 1 NC_008228.1 KEGG: bja:bll6424 hypothetical protein; hypothetical protein 438056 4173472 Patl_0382 Pseudoalteromonas atlantica T6c hypothetical protein YP_659966.1 436875 D 342610 CDS YP_659967.1 109896712 4173473 438300..439991 1 NC_008228.1 PFAM: sulfatase; KEGG: pfl:PFL_0205 arylsulfatase; sulfatase 439991 4173473 Patl_0383 Pseudoalteromonas atlantica T6c sulfatase YP_659967.1 438300 D 342610 CDS YP_659968.1 109896713 4173474 440605..441546 1 NC_008228.1 KEGG: hch:HCH_06743 hypothetical protein; hypothetical protein 441546 4173474 Patl_0384 Pseudoalteromonas atlantica T6c hypothetical protein YP_659968.1 440605 D 342610 CDS YP_659969.1 109896714 4173475 441601..442029 1 NC_008228.1 PFAM: thioesterase superfamily; KEGG: sil:SPO0440 thioesterase family protein; thioesterase superfamily protein 442029 4173475 Patl_0385 Pseudoalteromonas atlantica T6c thioesterase superfamily protein YP_659969.1 441601 D 342610 CDS YP_659970.1 109896715 4173476 complement(442111..442671) 1 NC_008228.1 KEGG: ilo:IL1417 outer membrane protein, porin family; porin family outer membrane protein 442671 4173476 Patl_0386 Pseudoalteromonas atlantica T6c porin family outer membrane protein YP_659970.1 442111 R 342610 CDS YP_659971.1 109896716 4173477 442956..443183 1 NC_008228.1 hypothetical protein 443183 4173477 Patl_0387 Pseudoalteromonas atlantica T6c hypothetical protein YP_659971.1 442956 D 342610 CDS YP_659972.1 109896717 4173478 complement(443295..444002) 1 NC_008228.1 KEGG: pha:PSHAa2209 hypothetical protein; hypothetical protein 444002 4173478 Patl_0388 Pseudoalteromonas atlantica T6c hypothetical protein YP_659972.1 443295 R 342610 CDS YP_659973.1 109896718 4173479 444125..444964 1 NC_008228.1 PFAM: Sterol desaturase; KEGG: par:Psyc_1393 possible sterol desaturase; sterol desaturase 444964 4173479 Patl_0389 Pseudoalteromonas atlantica T6c sterol desaturase YP_659973.1 444125 D 342610 CDS YP_659974.1 109896719 4173480 complement(444971..445591) 1 NC_008228.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: ilo:IL1156 phosphatidylglycerophosphate synthase; CDP-alcohol phosphatidyltransferase 445591 4173480 Patl_0390 Pseudoalteromonas atlantica T6c CDP-alcohol phosphatidyltransferase YP_659974.1 444971 R 342610 CDS YP_659975.1 109896720 4173481 complement(445651..446331) 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: vvu:VV12861 ABC-type uncharacterized transport system, ATPase component; ABC transporter-like protein 446331 4173481 Patl_0391 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_659975.1 445651 R 342610 CDS YP_659976.1 109896721 4173482 complement(446315..447964) 1 NC_008228.1 KEGG: vch:VC1665 ABC transporter, permease protein, putative; ABC transporter permease 447964 4173482 Patl_0392 Pseudoalteromonas atlantica T6c ABC transporter permease YP_659976.1 446315 R 342610 CDS YP_659977.1 109896722 4173483 complement(447940..449061) 1 NC_008228.1 KEGG: vch:VC1664 ABC transporter, periplasmic substrate-binding protein, putative; putative ABC transporter solute-binding protein 449061 4173483 Patl_0393 Pseudoalteromonas atlantica T6c putative ABC transporter solute-binding protein YP_659977.1 447940 R 342610 CDS YP_659978.1 109896723 4173484 complement(449144..450022) 1 NC_008228.1 KEGG: ilo:IL1167 hypothetical protein; hypothetical protein 450022 4173484 Patl_0394 Pseudoalteromonas atlantica T6c hypothetical protein YP_659978.1 449144 R 342610 CDS YP_659979.1 109896724 4173485 complement(450118..452259) 1 NC_008228.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase glucose-inhibited division protein A pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ilo:IL1160 mercuric reductase, membrane-associated; pyridine nucleotide-disulfide oxidoreductase dimerisation region 452259 4173485 Patl_0395 Pseudoalteromonas atlantica T6c pyridine nucleotide-disulfide oxidoreductase dimerisation region YP_659979.1 450118 R 342610 CDS YP_659980.1 109896725 4173070 complement(452281..454680) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAb0232 putative TonB dependent receptor; TonB-dependent receptor 454680 4173070 Patl_0396 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_659980.1 452281 R 342610 CDS YP_659981.1 109896726 4173071 455020..456267 1 NC_008228.1 PFAM: major facilitator superfamily MFS_1; KEGG: yps:YPTB0668 MFS family transporter, sugar efflux pump; major facilitator superfamily transporter 456267 4173071 Patl_0397 Pseudoalteromonas atlantica T6c major facilitator superfamily transporter YP_659981.1 455020 D 342610 CDS YP_659982.1 109896727 4173072 complement(456257..457240) 1 NC_008228.1 KEGG: son:SO1695 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein; SMART: PAS; PAS/PAC sensor-containing diguanylate cyclase 457240 4173072 Patl_0398 Pseudoalteromonas atlantica T6c PAS/PAC sensor-containing diguanylate cyclase YP_659982.1 456257 R 342610 CDS YP_659983.1 109896728 4173078 465515..467716 1 NC_008228.1 KEGG: pfl:PFL_1302 hypothetical protein; hypothetical protein 467716 4173078 Patl_0399 Pseudoalteromonas atlantica T6c hypothetical protein YP_659983.1 465515 D 342610 CDS YP_659984.1 109896729 4173079 complement(467916..468995) 1 NC_008228.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: vch:VC1061 cysteine synthase/cystathionine beta-synthase family protein; pyridoxal-5'-phosphate-dependent enzyme subunit beta 468995 4173079 Patl_0400 Pseudoalteromonas atlantica T6c pyridoxal-5'-phosphate-dependent enzyme subunit beta YP_659984.1 467916 R 342610 CDS YP_659985.1 109896730 4173080 complement(469395..469790) 1 NC_008228.1 hypothetical protein 469790 4173080 Patl_0401 Pseudoalteromonas atlantica T6c hypothetical protein YP_659985.1 469395 R 342610 CDS YP_659986.1 109896731 4173081 complement(469824..473198) 1 NC_008228.1 PFAM: transcriptional regulatory protein-like; KEGG: son:SO1699 transcriptional regulator; transcriptional regulator CadC 473198 4173081 Patl_0402 Pseudoalteromonas atlantica T6c transcriptional regulator CadC YP_659986.1 469824 R 342610 CDS YP_659987.1 109896732 4173082 complement(473437..476646) 1 NC_008228.1 PFAM: acriflavin resistance protein; KEGG: pha:PSHAa2957 multidrug resistance protein, AcrB/AcrD/AcrF; acriflavin resistance protein 476646 4173082 Patl_0403 Pseudoalteromonas atlantica T6c acriflavin resistance protein YP_659987.1 473437 R 342610 CDS YP_659988.1 109896733 4173083 complement(476655..477818) 1 NC_008228.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: pha:PSHAa2958 multidrug resistance protein; RND family efflux transporter MFP subunit 477818 4173083 Patl_0404 Pseudoalteromonas atlantica T6c RND family efflux transporter MFP subunit YP_659988.1 476655 R 342610 CDS YP_659989.1 109896734 4173794 478069..479721 1 NC_008228.1 PFAM: peptidase M28; KEGG: pha:PSHAa1017 hypothetical protein; peptidase M28 479721 4173794 Patl_0405 Pseudoalteromonas atlantica T6c peptidase M28 YP_659989.1 478069 D 342610 CDS YP_659990.1 109896735 4173795 479793..480335 1 NC_008228.1 KEGG: eli:ELI_10435 hypothetical protein; hypothetical protein 480335 4173795 Patl_0406 Pseudoalteromonas atlantica T6c hypothetical protein YP_659990.1 479793 D 342610 CDS YP_659991.1 109896736 4173796 480642..480914 1 NC_008228.1 TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF167; KEGG: vfi:VF0427 hypothetical protein; hypothetical protein 480914 4173796 Patl_0407 Pseudoalteromonas atlantica T6c hypothetical protein YP_659991.1 480642 D 342610 CDS YP_659992.1 109896737 4173797 481037..481906 1 NC_008228.1 KEGG: lpp:lpp1627 hypothetical protein; hypothetical protein 481906 4173797 Patl_0408 Pseudoalteromonas atlantica T6c hypothetical protein YP_659992.1 481037 D 342610 CDS YP_659993.1 109896738 4173798 complement(481967..482434) 1 NC_008228.1 PFAM: regulatory proteins, AsnC/Lrp; KEGG: ccr:CC2887 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 482434 4173798 Patl_0409 Pseudoalteromonas atlantica T6c AsnC family transcriptional regulator YP_659993.1 481967 R 342610 CDS YP_659994.1 109896739 4173799 482576..483394 1 NC_008228.1 KEGG: plu:plu1434 hypothetical protein; tryptophan 2 3-dioxygenase-like protein 483394 4173799 Patl_0410 Pseudoalteromonas atlantica T6c tryptophan 2 3-dioxygenase-like protein YP_659994.1 482576 D 342610 CDS YP_659995.1 109896740 4173800 483463..484536 1 NC_008228.1 PFAM: aminotransferase, class V; KEGG: pha:PSHAa0055 pyridoxal phosphate dependent enzyme; class V aminotransferase 484536 4173800 Patl_0411 Pseudoalteromonas atlantica T6c class V aminotransferase YP_659995.1 483463 D 342610 CDS YP_659996.1 109896741 4173801 complement(484604..485233) 1 NC_008228.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: pha:PSHAb0059 putative hydrolase/phosphatase protein; HAD family hydrolase 485233 4173801 Patl_0412 Pseudoalteromonas atlantica T6c HAD family hydrolase YP_659996.1 484604 R 342610 CDS YP_659997.1 109896742 4173802 485568..485984 1 NC_008228.1 KEGG: pha:PSHAb0233 hypothetical protein; hypothetical protein 485984 4173802 Patl_0413 Pseudoalteromonas atlantica T6c hypothetical protein YP_659997.1 485568 D 342610 CDS YP_659998.1 109896743 4173803 486270..488621 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ilo:IL2177 outer membrane protein; TonB-dependent receptor 488621 4173803 Patl_0414 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_659998.1 486270 D 342610 CDS YP_659999.1 109896744 4173804 488828..489574 1 NC_008228.1 PFAM: oxidoreductase FAD/NAD(P)-binding Oxidoreductase FAD-binding region FAD-binding 9, siderophore-interacting; KEGG: ppr:PBPRA0238 hypothetical ferredoxin-NADP reductase; oxidoreductase FAD/NAD(P)-binding protein 489574 4173804 Patl_0415 Pseudoalteromonas atlantica T6c oxidoreductase FAD/NAD(P)-binding protein YP_659999.1 488828 D 342610 CDS YP_660000.1 109896745 4173805 489774..490454 1 NC_008228.1 KEGG: tcx:Tcr_1008 hypothetical protein; hypothetical protein 490454 4173805 Patl_0416 Pseudoalteromonas atlantica T6c hypothetical protein YP_660000.1 489774 D 342610 CDS YP_660001.1 109896746 4173806 complement(490492..491880) 1 NC_008228.1 TIGRFAM: uroporphyrin-III C-methyltransferase siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: nmu:Nmul_A2313 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 491880 4173806 Patl_0417 Pseudoalteromonas atlantica T6c uroporphyrin-III C-methyltransferase YP_660001.1 490492 R 342610 CDS YP_660002.1 109896747 4173807 complement(492124..493863) 1 NC_008228.1 PFAM: helicase-like DbpA, RNA-binding DEAD/DEAH box helicase-like; KEGG: tcx:Tcr_2009 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 493863 4173807 Patl_0418 Pseudoalteromonas atlantica T6c DEAD/DEAH box helicase YP_660002.1 492124 R 342610 CDS YP_660003.1 109896748 4173808 494407..497160 1 NC_008228.1 PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: cps:CPS_0309 TPR domain protein; hypothetical protein 497160 4173808 Patl_0419 Pseudoalteromonas atlantica T6c hypothetical protein YP_660003.1 494407 D 342610 CDS YP_660004.1 109896749 4173809 complement(497258..497686) 1 NC_008228.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: cps:CPS_2236 thioredoxin; thioredoxin 497686 4173809 Patl_0420 Pseudoalteromonas atlantica T6c thioredoxin YP_660004.1 497258 R 342610 CDS YP_660005.1 109896750 4173810 complement(497687..498535) 1 NC_008228.1 PFAM: Ion transport protein; KEGG: ilo:IL1436 Kef-type K+ transport system, NAD-binding component; Ion transport protein 498535 4173810 Patl_0421 Pseudoalteromonas atlantica T6c Ion transport protein YP_660005.1 497687 R 342610 CDS YP_660006.1 109896751 4173811 498909..499550 1 NC_008228.1 PFAM: Haem oxygenase; KEGG: dra:DRA0052m heme oxygenase; heme oxygenase 499550 4173811 Patl_0422 Pseudoalteromonas atlantica T6c heme oxygenase YP_660006.1 498909 D 342610 CDS YP_660007.1 109896752 4173812 499547..501946 1 NC_008228.1 PFAM: GAF ATP-binding region, ATPase-like histidine kinase A-like Phytochrome, central region PAS fold-2; KEGG: ana:all2899 phytochrome-like protein, two-component sensor; multi-sensor signal transduction histidine kinase 501946 4173812 Patl_0423 Pseudoalteromonas atlantica T6c multi-sensor signal transduction histidine kinase YP_660007.1 499547 D 342610 CDS YP_660008.1 109896753 4173813 502155..502607 1 NC_008228.1 PFAM: response regulator receiver; KEGG: pha:PSHAa2395 two-component response regulator; response regulator receiver protein 502607 4173813 Patl_0424 Pseudoalteromonas atlantica T6c response regulator receiver protein YP_660008.1 502155 D 342610 CDS YP_660009.1 109896754 4173716 502924..504084 1 NC_008228.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: atc:AGR_pAT_199 hypothetical protein; iron-containing alcohol dehydrogenase 504084 4173716 Patl_0425 Pseudoalteromonas atlantica T6c iron-containing alcohol dehydrogenase YP_660009.1 502924 D 342610 CDS YP_660010.1 109896755 4173717 504223..504690 1 NC_008228.1 PFAM: thioesterase superfamily; KEGG: pfl:PFL_0291 thioesterase family protein domain protein; thioesterase superfamily protein 504690 4173717 Patl_0426 Pseudoalteromonas atlantica T6c thioesterase superfamily protein YP_660010.1 504223 D 342610 CDS YP_660011.1 109896756 4173718 complement(504787..505974) 1 NC_008228.1 PFAM: hydroxymethylglutaryl-coenzyme A reductase; KEGG: nph:NP0368A hydroxymethylglutaryl-CoA reductase (NADPH) 1; hydroxymethylglutaryl-CoA reductase (NADPH) 505974 4173718 Patl_0427 Pseudoalteromonas atlantica T6c hydroxymethylglutaryl-CoA reductase (NADPH) YP_660011.1 504787 R 342610 CDS YP_660012.1 109896757 4173719 complement(506131..506454) 1 NC_008228.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: aci:ACIAD1498 7-Fe ferredoxin; 4Fe-4S ferredoxin 506454 4173719 Patl_0428 Pseudoalteromonas atlantica T6c 4Fe-4S ferredoxin YP_660012.1 506131 R 342610 CDS YP_660013.1 109896758 4173720 506675..508288 1 NC_008228.1 PFAM: FAD dependent oxidoreductase FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pha:PSHAb0412 putative uncharacterized dehydrogenase; FAD dependent oxidoreductase 508288 4173720 Patl_0429 Pseudoalteromonas atlantica T6c FAD dependent oxidoreductase YP_660013.1 506675 D 342610 CDS YP_660014.1 109896759 4173721 complement(508359..509669) 1 NC_008228.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: son:SO3904 outer membrane protein TolC; TolC family type I secretion outer membrane protein 509669 4173721 Patl_0430 Pseudoalteromonas atlantica T6c TolC family type I secretion outer membrane protein YP_660014.1 508359 R 342610 CDS YP_660015.1 109896760 4173722 509893..510513 1 NC_008228.1 KEGG: vfi:VF2232 ADP-ribose pyrophosphatase; TIGRFAM: Nucleoside diphosphate pyrophosphatase; PFAM: NUDIX hydrolase; nucleoside diphosphate pyrophosphatase 510513 4173722 Patl_0431 Pseudoalteromonas atlantica T6c nucleoside diphosphate pyrophosphatase YP_660015.1 509893 D 342610 CDS YP_660016.1 109896761 4173723 510497..510952 1 NC_008228.1 PFAM: protein of unknown function DUF1249; KEGG: yps:YPTB3398 hypothetical protein; hypothetical protein 510952 4173723 Patl_0432 Pseudoalteromonas atlantica T6c hypothetical protein YP_660016.1 510497 D 342610 CDS YP_660017.1 109896762 4173724 510968..511720 1 NC_008228.1 PFAM: metallophosphoesterase; KEGG: pfo:Pfl_0497 metallophosphoesterase; metallophosphoesterase 511720 4173724 Patl_0433 Pseudoalteromonas atlantica T6c metallophosphoesterase YP_660017.1 510968 D 342610 CDS YP_660018.1 109896763 4173725 511731..512324 1 NC_008228.1 PFAM: protein of unknown function UPF0227; KEGG: vpa:VP0429 hypothetical protein; hypothetical protein 512324 4173725 Patl_0434 Pseudoalteromonas atlantica T6c hypothetical protein YP_660018.1 511731 D 342610 CDS YP_660019.1 109896764 4173726 512409..514298 1 NC_008228.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 514298 4173726 Patl_0435 Pseudoalteromonas atlantica T6c DNA topoisomerase IV subunit B YP_660019.1 512409 D 342610 CDS YP_660020.1 109896765 4173727 514351..515640 1 NC_008228.1 KEGG: tbd:Tbd_0773 hypothetical protein; hypothetical protein 515640 4173727 Patl_0436 Pseudoalteromonas atlantica T6c hypothetical protein YP_660020.1 514351 D 342610 CDS YP_660021.1 109896766 4173728 complement(515663..516004) 1 NC_008228.1 PFAM: small multidrug resistance protein; KEGG: reu:Reut_A2364 small multidrug resistance protein; small multidrug resistance protein 516004 4173728 Patl_0437 Pseudoalteromonas atlantica T6c small multidrug resistance protein YP_660021.1 515663 R 342610 CDS YP_660022.1 109896767 4173729 complement(516023..516334) 1 NC_008228.1 KEGG: pha:PSHAa0471 hypothetical protein; hypothetical protein 516334 4173729 Patl_0438 Pseudoalteromonas atlantica T6c hypothetical protein YP_660022.1 516023 R 342610 CDS YP_660023.1 109896768 4173730 516387..516638 1 NC_008228.1 hypothetical protein 516638 4173730 Patl_0439 Pseudoalteromonas atlantica T6c hypothetical protein YP_660023.1 516387 D 342610 CDS YP_660024.1 109896769 4173731 complement(516639..517664) 1 NC_008228.1 TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM; KEGG: vch:VC2661 hypothetical protein; lysine 2,3-aminomutase YodO family protein 517664 4173731 Patl_0440 Pseudoalteromonas atlantica T6c lysine 2,3-aminomutase YodO family protein YP_660024.1 516639 R 342610 CDS YP_660025.1 109896770 4173732 517702..518271 1 NC_008228.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 518271 4173732 Patl_0441 Pseudoalteromonas atlantica T6c elongation factor P YP_660025.1 517702 D 342610 CDS YP_660026.1 109896771 4173733 518341..519324 1 NC_008228.1 TIGRFAM: lysyl-tRNA synthetase-related protein GenX; PFAM: tRNA synthetase, class II (D, K and N); KEGG: spt:SPA4161 lysyl-tRNA synthetase; lysyl-tRNA synthetase-like protein GenX 519324 4173733 Patl_0442 Pseudoalteromonas atlantica T6c lysyl-tRNA synthetase-like protein GenX YP_660026.1 518341 D 342610 CDS YP_660027.1 109896772 4173734 519409..520545 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: ilo:IL2366 signaling protein with a acyltransferase and GGDEF domains; diguanylate cyclase 520545 4173734 Patl_0443 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_660027.1 519409 D 342610 CDS YP_660028.1 109896773 4173217 520668..521117 1 NC_008228.1 KEGG: dar:Daro_0236 hypothetical protein; hypothetical protein 521117 4173217 Patl_0444 Pseudoalteromonas atlantica T6c hypothetical protein YP_660028.1 520668 D 342610 CDS YP_660029.1 109896774 4173218 521125..521655 1 NC_008228.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_04390 acetyltransferase, including N-acetylases of ribosomal protein; N-acetyltransferase GCN5 521655 4173218 Patl_0445 Pseudoalteromonas atlantica T6c N-acetyltransferase GCN5 YP_660029.1 521125 D 342610 CDS YP_660030.1 109896775 4173219 complement(521641..522237) 1 NC_008228.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: ilo:IL1866 peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family; cyclophilin type peptidyl-prolyl cis-trans isomerase 522237 4173219 Patl_0446 Pseudoalteromonas atlantica T6c cyclophilin type peptidyl-prolyl cis-trans isomerase YP_660030.1 521641 R 342610 CDS YP_660031.1 109896776 4173220 complement(522251..523405) 1 NC_008228.1 PFAM: methyltransferase small Methyltransferase type 11; KEGG: pha:PSHAa2245 ribosomal RNA small subunit methyltransferase D; rRNA (guanine-N(2)-)-methyltransferase 523405 4173220 Patl_0447 Pseudoalteromonas atlantica T6c rRNA (guanine-N(2)-)-methyltransferase YP_660031.1 522251 R 342610 CDS YP_660032.1 109896777 4173221 523431..524063 1 NC_008228.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: vvy:VVA0455 alkylated DNA repair protein; 2OG-Fe(II) oxygenase 524063 4173221 Patl_0448 Pseudoalteromonas atlantica T6c 2OG-Fe(II) oxygenase YP_660032.1 523431 D 342610 CDS YP_660033.1 109896778 4173222 524109..524423 1 NC_008228.1 PFAM: BolA-like protein; KEGG: ppr:PBPRA0820 putative cell division protein BolA; BolA-like protein 524423 4173222 Patl_0449 Pseudoalteromonas atlantica T6c BolA-like protein YP_660033.1 524109 D 342610 CDS YP_660034.1 109896779 4173223 524521..524691 1 NC_008228.1 PFAM: protein of unknown function UPF0057; KEGG: dps:DP1039 hypothetical protein; hypothetical protein 524691 4173223 Patl_0450 Pseudoalteromonas atlantica T6c hypothetical protein YP_660034.1 524521 D 342610 CDS YP_660035.1 109896780 4173224 524787..525968 1 NC_008228.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 525968 4173224 Patl_0451 Pseudoalteromonas atlantica T6c trans-2-enoyl-CoA reductase YP_660035.1 524787 D 342610 CDS YP_660036.1 109896781 4173225 526413..527786 1 NC_008228.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 527786 4173225 Patl_0452 Pseudoalteromonas atlantica T6c Na(+)-translocating NADH-quinone reductase subunit A YP_660036.1 526413 D 342610 CDS YP_660037.1 109896782 4173226 527790..529001 1 NC_008228.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 529001 4173226 Patl_0453 Pseudoalteromonas atlantica T6c Na(+)-translocating NADH-quinone reductase subunit B YP_660037.1 527790 D 342610 CDS YP_660038.1 109896783 4173227 528991..529752 1 NC_008228.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 529752 4173227 Patl_0454 Pseudoalteromonas atlantica T6c Na(+)-translocating NADH-quinone reductase subunit C YP_660038.1 528991 D 342610 CDS YP_660039.1 109896784 4173228 529764..530396 1 NC_008228.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 530396 4173228 Patl_0455 Pseudoalteromonas atlantica T6c Na(+)-translocating NADH-quinone reductase subunit D YP_660039.1 529764 D 342610 CDS YP_660040.1 109896785 4173229 530401..531009 1 NC_008228.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 531009 4173229 Patl_0456 Pseudoalteromonas atlantica T6c Na(+)-translocating NADH-quinone reductase subunit E YP_660040.1 530401 D 342610 CDS YP_660041.1 109896786 4173230 531034..532260 1 NC_008228.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 532260 4173230 Patl_0457 Pseudoalteromonas atlantica T6c Na(+)-translocating NADH-quinone reductase subunit F YP_660041.1 531034 D 342610 CDS YP_660042.1 109896787 4173231 532348..533373 1 NC_008228.1 PFAM: ApbE-like lipoprotein; KEGG: vch:VC2289 thiamin biosynthesis lipoprotein ApbE; ApbE-like lipoprotein 533373 4173231 Patl_0458 Pseudoalteromonas atlantica T6c ApbE-like lipoprotein YP_660042.1 532348 D 342610 CDS YP_660043.1 109896788 4173232 533408..533641 1 NC_008228.1 PFAM: protein of unknown function DUF539; KEGG: ilo:IL1043 uncharacterized conserved membrane or secreted protein; hypothetical protein 533641 4173232 Patl_0459 Pseudoalteromonas atlantica T6c hypothetical protein YP_660043.1 533408 D 342610 CDS YP_660044.1 109896789 4173233 533737..534807 1 NC_008228.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 534807 4173233 Patl_0460 Pseudoalteromonas atlantica T6c DNA polymerase IV YP_660044.1 533737 D 342610 CDS YP_660045.1 109896790 4173234 534913..535146 1 NC_008228.1 PFAM: protein of unknown function DUF1653; KEGG: psp:PSPPH_3208 hypothetical protein; hypothetical protein 535146 4173234 Patl_0461 Pseudoalteromonas atlantica T6c hypothetical protein YP_660045.1 534913 D 342610 CDS YP_660046.1 109896791 4173235 535225..536103 1 NC_008228.1 PFAM: beta-lactamase-like; KEGG: ilo:IL0617 Zn-dependent hydrolase, glyoxylase family; beta-lactamase-like protein 536103 4173235 Patl_0462 Pseudoalteromonas atlantica T6c beta-lactamase-like protein YP_660046.1 535225 D 342610 CDS YP_660047.1 109896792 4173236 complement(536200..537858) 1 NC_008228.1 PFAM: Amidohydrolase 3; KEGG: ilo:IL1207 predicted metal-dependent amidohydrolase with the TIM-barrel fold; amidohydrolase 3 537858 4173236 Patl_0463 Pseudoalteromonas atlantica T6c amidohydrolase 3 YP_660047.1 536200 R 342610 CDS YP_660048.1 109896793 4171807 complement(538040..540127) 1 NC_008228.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 540127 4171807 Patl_0464 Pseudoalteromonas atlantica T6c elongation factor G YP_660048.1 538040 R 342610 CDS YP_660049.1 109896794 4171808 complement(540401..541423) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: son:SO2197 GGDEF family protein; diguanylate cyclase 541423 4171808 Patl_0465 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_660049.1 540401 R 342610 CDS YP_660050.1 109896795 4171809 complement(541570..544911) 1 NC_008228.1 PFAM: amidohydrolase WD40-like beta Propeller; KEGG: pha:PSHAa1171 hypothetical protein; amidohydrolase 544911 4171809 Patl_0466 Pseudoalteromonas atlantica T6c amidohydrolase YP_660050.1 541570 R 342610 CDS YP_660051.1 109896796 4171810 complement(545066..547276) 1 NC_008228.1 PFAM: type II secretion system protein E GAF; SMART: ATPase; KEGG: neu:NE2290 bacterial type II secretion system protein E:GAF domain; putative GAF sensor protein 547276 4171810 Patl_0467 Pseudoalteromonas atlantica T6c putative GAF sensor protein YP_660051.1 545066 R 342610 CDS YP_660052.1 109896797 4171811 547635..547946 1 NC_008228.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 547946 rpsJ 4171811 rpsJ Pseudoalteromonas atlantica T6c 30S ribosomal protein S10 YP_660052.1 547635 D 342610 CDS YP_660053.1 109896798 4171812 547965..548603 1 NC_008228.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 548603 rplC 4171812 rplC Pseudoalteromonas atlantica T6c 50S ribosomal protein L3 YP_660053.1 547965 D 342610 CDS YP_660054.1 109896799 4171813 548622..549227 1 NC_008228.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 549227 rplD 4171813 rplD Pseudoalteromonas atlantica T6c 50S ribosomal protein L4 YP_660054.1 548622 D 342610 CDS YP_660055.1 109896800 4171814 549224..549526 1 NC_008228.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 549526 rplW 4171814 rplW Pseudoalteromonas atlantica T6c 50S ribosomal protein L23 YP_660055.1 549224 D 342610 CDS YP_660056.1 109896801 4171815 549541..550365 1 NC_008228.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 550365 rplB 4171815 rplB Pseudoalteromonas atlantica T6c 50S ribosomal protein L2 YP_660056.1 549541 D 342610 CDS YP_660057.1 109896802 4171816 550381..550656 1 NC_008228.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: vpa:VP0261 ribosomal protein S19; 30S ribosomal protein S19 550656 4171816 Patl_0473 Pseudoalteromonas atlantica T6c 30S ribosomal protein S19 YP_660057.1 550381 D 342610 CDS YP_660058.1 109896803 4171817 550667..550999 1 NC_008228.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 550999 rplV 4171817 rplV Pseudoalteromonas atlantica T6c 50S ribosomal protein L22 YP_660058.1 550667 D 342610 CDS YP_660059.1 109896804 4171818 551009..551707 1 NC_008228.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 551707 rpsC 4171818 rpsC Pseudoalteromonas atlantica T6c 30S ribosomal protein S3 YP_660059.1 551009 D 342610 CDS YP_660060.1 109896805 4171819 551710..552120 1 NC_008228.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 552120 rplP 4171819 rplP Pseudoalteromonas atlantica T6c 50S ribosomal protein L16 YP_660060.1 551710 D 342610 CDS YP_660061.1 109896806 4171820 552120..552311 1 NC_008228.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 552311 4171820 Patl_0477 Pseudoalteromonas atlantica T6c 50S ribosomal protein L29 YP_660061.1 552120 D 342610 CDS YP_660062.1 109896807 4171821 552311..552562 1 NC_008228.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 552562 rpsQ 4171821 rpsQ Pseudoalteromonas atlantica T6c 30S ribosomal protein S17 YP_660062.1 552311 D 342610 CDS YP_660063.1 109896808 4171822 complement(552665..554080) 1 NC_008228.1 PFAM: peptidase S41; KEGG: pha:PSHAa0289 hypothetical protein; peptidase S41 554080 4171822 Patl_0479 Pseudoalteromonas atlantica T6c peptidase S41 YP_660063.1 552665 R 342610 CDS YP_660064.1 109896809 4171823 554597..555778 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: rru:Rru_A3374 putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain; diguanylate cyclase 555778 4171823 Patl_0480 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_660064.1 554597 D 342610 CDS YP_660065.1 109896810 4171824 555911..557407 1 NC_008228.1 PFAM: Catalase-like; KEGG: rru:Rru_A2489 catalase; catalase 557407 4171824 Patl_0481 Pseudoalteromonas atlantica T6c catalase YP_660065.1 555911 D 342610 CDS YP_660066.1 109896811 4171825 complement(557538..558083) 1 NC_008228.1 PFAM: Paraquat-inducible protein A; KEGG: son:SO4710 hypothetical protein; paraquat-inducible protein A 558083 4171825 Patl_0482 Pseudoalteromonas atlantica T6c paraquat-inducible protein A YP_660066.1 557538 R 342610 CDS YP_660067.1 109896812 4172710 complement(558138..558566) 1 NC_008228.1 KEGG: xac:XAC3767 hypothetical protein; hypothetical protein 558566 4172710 Patl_0483 Pseudoalteromonas atlantica T6c hypothetical protein YP_660067.1 558138 R 342610 CDS YP_660068.1 109896813 4172711 complement(558568..559836) 1 NC_008228.1 KEGG: vch:VC2456 hypothetical protein; hypothetical protein 559836 4172711 Patl_0484 Pseudoalteromonas atlantica T6c hypothetical protein YP_660068.1 558568 R 342610 CDS YP_660069.1 109896814 4172712 560064..560690 1 NC_008228.1 hypothetical protein 560690 4172712 Patl_0485 Pseudoalteromonas atlantica T6c hypothetical protein YP_660069.1 560064 D 342610 CDS YP_660070.1 109896815 4172713 complement(560733..561587) 1 NC_008228.1 TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase-like amino acid-binding ACT; KEGG: pfl:PFL_4786 formyltetrahydrofolate deformylase; formyltetrahydrofolate deformylase 561587 4172713 Patl_0486 Pseudoalteromonas atlantica T6c formyltetrahydrofolate deformylase YP_660070.1 560733 R 342610 CDS YP_660071.1 109896816 4172714 complement(561691..562221) 1 NC_008228.1 TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: eca:ECA3315 2'-5' RNA ligase; 2'-5' RNA ligase 562221 4172714 Patl_0487 Pseudoalteromonas atlantica T6c 2'-5' RNA ligase YP_660071.1 561691 R 342610 CDS YP_660072.1 109896817 4172715 562332..564803 1 NC_008228.1 TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase-like DEAD/DEAH box helicase-like Helicase ATP-dependent-like; KEGG: hch:HCH_05855 ATP-dependent helicase HrpB; ATP-dependent helicase HrpB 564803 4172715 Patl_0488 Pseudoalteromonas atlantica T6c ATP-dependent helicase HrpB YP_660072.1 562332 D 342610 CDS YP_660073.1 109896818 4172716 564933..567278 1 NC_008228.1 KEGG: cps:CPS_4301 penicillin-binding protein; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase, family 51 penicillin-binding protein, transpeptidase; penicillin-binding protein 1B 567278 4172716 Patl_0489 Pseudoalteromonas atlantica T6c penicillin-binding protein 1B YP_660073.1 564933 D 342610 CDS YP_660074.1 109896819 4172717 complement(567295..568161) 1 NC_008228.1 KEGG: sma:SAV4404 hypothetical protein; hypothetical protein 568161 4172717 Patl_0490 Pseudoalteromonas atlantica T6c hypothetical protein YP_660074.1 567295 R 342610 CDS YP_660075.1 109896820 4172718 568597..568935 1 NC_008228.1 PFAM: nitrogen regulatory protein P-II; KEGG: vvy:VV2748 nitrogen regulatory protein PII; nitrogen regulatory protein P-II 568935 4172718 Patl_0491 Pseudoalteromonas atlantica T6c nitrogen regulatory protein P-II YP_660075.1 568597 D 342610 CDS YP_660076.1 109896821 4172719 568956..570224 1 NC_008228.1 PFAM: Rh-like protein/ammonium transporter; KEGG: cps:CPS_0642 putative ammonium transporter; Rh-like protein/ammonium transporter 570224 4172719 Patl_0492 Pseudoalteromonas atlantica T6c Rh-like protein/ammonium transporter YP_660076.1 568956 D 342610 CDS YP_660077.1 109896822 4172720 570525..571445 1 NC_008228.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: cps:CPS_4479 putative melanin biosynthesis protein TyrA; Dyp-type peroxidase family protein 571445 4172720 Patl_0493 Pseudoalteromonas atlantica T6c Dyp-type peroxidase family protein YP_660077.1 570525 D 342610 CDS YP_660078.1 109896823 4172721 complement(571808..572902) 1 NC_008228.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase Tetratricopeptide TPR_2; KEGG: lic:LIC20094 adenylate/guanylate cyclase; adenylate/guanylate cyclase 572902 4172721 Patl_0494 Pseudoalteromonas atlantica T6c adenylate/guanylate cyclase YP_660078.1 571808 R 342610 CDS YP_660079.1 109896824 4172722 complement(572947..574242) 1 NC_008228.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 574242 4172722 Patl_0495 Pseudoalteromonas atlantica T6c glutamate-1-semialdehyde aminotransferase YP_660079.1 572947 R 342610 CDS YP_660080.1 109896825 4172723 complement(574297..575301) 1 NC_008228.1 Catalyzes the conversion of carbamoyl phosphate and l-aspartate to yield orthophosphate and n-carbamoyl-l-aspartate; aspartate carbamoyltransferase 575301 4172723 Patl_0496 Pseudoalteromonas atlantica T6c aspartate carbamoyltransferase YP_660080.1 574297 R 342610 CDS YP_660081.1 109896826 4172725 complement(576022..576738) 1 NC_008228.1 PFAM: lipolytic enzyme, G-D-S-L; KEGG: bur:Bcep18194_A3328 hypothetical protein; G-D-S-L lipolytic protein 576738 4172725 Patl_0498 Pseudoalteromonas atlantica T6c G-D-S-L lipolytic protein YP_660081.1 576022 R 342610 CDS YP_660082.1 109896827 4172726 complement(576959..578020) 1 NC_008228.1 PFAM: peptidase M12A, astacin peptidase M10A and M12B, matrixin and adamalysin; SMART: Peptidase, metallopeptidases; KEGG: sco:SCO6992 regulatory protein; peptidase M12A, astacin 578020 4172726 Patl_0499 Pseudoalteromonas atlantica T6c peptidase M12A, astacin YP_660082.1 576959 R 342610 CDS YP_660083.1 109896828 4172727 complement(578325..578777) 1 NC_008228.1 PFAM: regulatory proteins, AsnC/Lrp; KEGG: sil:SPO3612 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 578777 4172727 Patl_0500 Pseudoalteromonas atlantica T6c AsnC family transcriptional regulator YP_660083.1 578325 R 342610 CDS YP_660084.1 109896829 4172728 578895..579488 1 NC_008228.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sil:SPO3613 transporter, LysE family; lysine exporter protein LysE/YggA 579488 4172728 Patl_0501 Pseudoalteromonas atlantica T6c lysine exporter protein LysE/YggA YP_660084.1 578895 D 342610 CDS YP_660085.1 109896830 4172729 complement(579605..580024) 1 NC_008228.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: cvi:CV0705 probable FkbP-type peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase 580024 4172729 Patl_0502 Pseudoalteromonas atlantica T6c FKBP-type peptidylprolyl isomerase YP_660085.1 579605 R 342610 CDS YP_660086.1 109896831 4173447 complement(580126..580581) 1 NC_008228.1 KEGG: nar:Saro_0460 hypothetical protein; hypothetical protein 580581 4173447 Patl_0503 Pseudoalteromonas atlantica T6c hypothetical protein YP_660086.1 580126 R 342610 CDS YP_660087.1 109896832 4173448 complement(580890..581420) 1 NC_008228.1 hypothetical protein 581420 4173448 Patl_0504 Pseudoalteromonas atlantica T6c hypothetical protein YP_660087.1 580890 R 342610 CDS YP_660088.1 109896833 4173449 complement(581408..584083) 1 NC_008228.1 KEGG: hch:HCH_04317 PPE-repeat protein; PPE repeat-containing protein 584083 4173449 Patl_0505 Pseudoalteromonas atlantica T6c PPE repeat-containing protein YP_660088.1 581408 R 342610 CDS YP_660089.1 109896834 4173450 584541..585221 1 NC_008228.1 KEGG: son:SO1658 hypothetical protein; hypothetical protein 585221 4173450 Patl_0506 Pseudoalteromonas atlantica T6c hypothetical protein YP_660089.1 584541 D 342610 CDS YP_660090.1 109896835 4173451 complement(585269..588406) 1 NC_008228.1 PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt Diverse 7TM receptor, transmembrane region; KEGG: son:SO3457 sensor histidine kinase/response regulator; multi-sensor hybrid histidine kinase 588406 4173451 Patl_0507 Pseudoalteromonas atlantica T6c multi-sensor hybrid histidine kinase YP_660090.1 585269 R 342610 CDS YP_660091.1 109896836 4173452 588566..589681 1 NC_008228.1 KEGG: pha:PSHAa2586 L-sorbosone dehydrogenase (SNDH); L-sorbosone dehydrogenase (SNDH) 589681 4173452 Patl_0508 Pseudoalteromonas atlantica T6c L-sorbosone dehydrogenase (SNDH) YP_660091.1 588566 D 342610 CDS YP_660092.1 109896837 4173453 589764..592076 1 NC_008228.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 592076 4173453 Patl_0509 Pseudoalteromonas atlantica T6c DNA topoisomerase IV subunit A YP_660092.1 589764 D 342610 CDS YP_660093.1 109896838 4173454 592139..593803 1 NC_008228.1 PFAM: Carboxylesterase, type B; KEGG: sma:SAV433 putative carboxylesterase; carboxylesterase 593803 4173454 Patl_0510 Pseudoalteromonas atlantica T6c carboxylesterase YP_660093.1 592139 D 342610 CDS YP_660094.1 109896839 4173455 593812..594930 1 NC_008228.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: pha:PSHAa0177 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase 594930 4173455 Patl_0511 Pseudoalteromonas atlantica T6c succinylglutamate desuccinylase/aspartoacylase YP_660094.1 593812 D 342610 CDS YP_660095.1 109896840 4173456 complement(594948..595445) 1 NC_008228.1 PFAM: regulatory proteins, AsnC/Lrp; KEGG: cps:CPS_3819 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 595445 4173456 Patl_0512 Pseudoalteromonas atlantica T6c AsnC family transcriptional regulator YP_660095.1 594948 R 342610 CDS YP_660096.1 109896841 4173457 complement(595672..596991) 1 NC_008228.1 PFAM: peptidase M23B Opacity-associated protein A Opacity-associated protein A-like; KEGG: ilo:IL2237 peptidase, M23/M37 family; peptidase M23B 596991 4173457 Patl_0513 Pseudoalteromonas atlantica T6c peptidase M23B YP_660096.1 595672 R 342610 CDS YP_660097.1 109896842 4173458 597181..598380 1 NC_008228.1 TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; KEGG: cps:CPS_4727 tyrosyl-tRNA synthetase; tyrosyl-tRNA synthetase 598380 4173458 Patl_0514 Pseudoalteromonas atlantica T6c tyrosyl-tRNA synthetase YP_660097.1 597181 D 342610 CDS YP_660098.1 109896843 4173459 complement(598424..598840) 1 NC_008228.1 KEGG: son:SO1320 hypothetical protein; hypothetical protein 598840 4173459 Patl_0515 Pseudoalteromonas atlantica T6c hypothetical protein YP_660098.1 598424 R 342610 CDS YP_660099.1 109896844 4173460 complement(598922..599371) 1 NC_008228.1 hypothetical protein 599371 4173460 Patl_0516 Pseudoalteromonas atlantica T6c hypothetical protein YP_660099.1 598922 R 342610 CDS YP_660100.1 109896845 4173461 complement(599546..600442) 1 NC_008228.1 PFAM: cobalamin biosynthesis protein CbiB; KEGG: cps:CPS_4742 CobD/CbiB family protein; cobalamin biosynthesis protein CbiB 600442 4173461 Patl_0517 Pseudoalteromonas atlantica T6c cobalamin biosynthesis protein CbiB YP_660100.1 599546 R 342610 CDS YP_660101.1 109896846 4173462 complement(600524..601231) 1 NC_008228.1 PFAM: purine and other phosphorylases, family 1; KEGG: vpa:VP0479 MTA/SAH nucleosidase; adenosylhomocysteine nucleosidase 601231 4173462 Patl_0518 Pseudoalteromonas atlantica T6c adenosylhomocysteine nucleosidase YP_660101.1 600524 R 342610 CDS YP_660102.1 109896847 4173463 complement(601477..602643) 1 NC_008228.1 KEGG: pha:PSHAa0696 hypothetical protein; hypothetical protein 602643 4173463 Patl_0519 Pseudoalteromonas atlantica T6c hypothetical protein YP_660102.1 601477 R 342610 CDS YP_660103.1 109896848 4173464 complement(602825..604510) 1 NC_008228.1 PFAM: histidine kinase, HAMP region chemotaxis sensory transducer Cache, type 2; KEGG: vpa:VPA0024 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 604510 4173464 Patl_0520 Pseudoalteromonas atlantica T6c methyl-accepting chemotaxis sensory transducer YP_660103.1 602825 R 342610 CDS YP_660104.1 109896849 4173465 604827..606767 1 NC_008228.1 TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: pha:PSHAa0698 acetyl-coenzyme A synthetase (acetate--CoA ligase) (acyl-activating enzyme); acetate--CoA ligase 606767 4173465 Patl_0521 Pseudoalteromonas atlantica T6c acetate--CoA ligase YP_660104.1 604827 D 342610 CDS YP_660105.1 109896850 4173506 606787..607446 1 NC_008228.1 PFAM: regulatory protein, LuxR response regulator receiver; KEGG: pha:PSHAa0699 regulator in two-component regulatory system ; LuxR; two component LuxR family transcriptional regulator 607446 4173506 Patl_0522 Pseudoalteromonas atlantica T6c two component LuxR family transcriptional regulator YP_660105.1 606787 D 342610 CDS YP_660106.1 109896851 4173507 complement(607394..610831) 1 NC_008228.1 TIGRFAM: PAS sensor protein; PFAM: Na+/solute symporter response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: pha:PSHAa0585 sensory box histidine kinase/response regulator; multi-sensor hybrid histidine kinase 610831 4173507 Patl_0523 Pseudoalteromonas atlantica T6c multi-sensor hybrid histidine kinase YP_660106.1 607394 R 342610 CDS YP_660107.1 109896852 4173508 611001..611279 1 NC_008228.1 KEGG: pha:PSHAa0586 hypothetical protein; hypothetical protein 611279 4173508 Patl_0524 Pseudoalteromonas atlantica T6c hypothetical protein YP_660107.1 611001 D 342610 CDS YP_660108.1 109896853 4173509 611290..613011 1 NC_008228.1 PFAM: Na+/solute symporter; KEGG: ilo:IL1178 Na+/solute symporter, Ssf family; Na+/solute symporter 613011 4173509 Patl_0525 Pseudoalteromonas atlantica T6c Na+/solute symporter YP_660108.1 611290 D 342610 CDS YP_660109.1 109896854 4173510 613208..614350 1 NC_008228.1 PFAM: Domain of unknown function DUF1745; KEGG: cps:CPS_0128 hypothetical protein; hypothetical protein 614350 4173510 Patl_0526 Pseudoalteromonas atlantica T6c hypothetical protein YP_660109.1 613208 D 342610 CDS YP_660110.1 109896855 4173511 614383..616209 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: tbd:Tbd_1042 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(s); diguanylate cyclase/phosphodiesterase 616209 4173511 Patl_0527 Pseudoalteromonas atlantica T6c diguanylate cyclase/phosphodiesterase YP_660110.1 614383 D 342610 CDS YP_660111.1 109896856 4173512 616438..618273 1 NC_008228.1 PFAM: CBS domain containing protein protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: pha:PSHAa0588 inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase); signal-transduction protein 618273 4173512 Patl_0528 Pseudoalteromonas atlantica T6c signal-transduction protein YP_660111.1 616438 D 342610 CDS YP_660112.1 109896857 4173513 618306..618980 1 NC_008228.1 PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: cps:CPS_4955 DNA polymerase III epsilon subunit; exonuclease 618980 4173513 Patl_0529 Pseudoalteromonas atlantica T6c exonuclease YP_660112.1 618306 D 342610 CDS YP_660113.1 109896858 4173514 619131..620309 1 NC_008228.1 PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: cps:CPS_2703 TPR domain protein; hypothetical protein 620309 4173514 Patl_0530 Pseudoalteromonas atlantica T6c hypothetical protein YP_660113.1 619131 D 342610 CDS YP_660114.1 109896859 4173515 complement(620372..621211) 1 NC_008228.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: ppr:PBPRB0800 putative oxidoreductase iron/ascorbatefamily; 2OG-Fe(II) oxygenase 621211 4173515 Patl_0531 Pseudoalteromonas atlantica T6c 2OG-Fe(II) oxygenase YP_660114.1 620372 R 342610 CDS YP_660115.1 109896860 4173516 complement(621278..622486) 1 NC_008228.1 TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter nucleoside recognition Na+ dependent nucleoside transporter-like; KEGG: son:SO1214 NupC family protein; nucleoside transporter 622486 4173516 Patl_0532 Pseudoalteromonas atlantica T6c nucleoside transporter YP_660115.1 621278 R 342610 CDS YP_660116.1 109896861 4173517 complement(622532..623155) 1 NC_008228.1 TIGRFAM: uridine kinase; PFAM: phosphoribulokinase/uridine kinase; KEGG: cps:CPS_1974 uridine kinase; uridine kinase 623155 4173517 Patl_0533 Pseudoalteromonas atlantica T6c uridine kinase YP_660116.1 622532 R 342610 CDS YP_660117.1 109896862 4173518 complement(623490..624425) 1 NC_008228.1 KEGG: pha:PSHAb0344 hypothetical protein; hypothetical protein 624425 4173518 Patl_0534 Pseudoalteromonas atlantica T6c hypothetical protein YP_660117.1 623490 R 342610 CDS YP_660118.1 109896863 4173519 complement(624415..625254) 1 NC_008228.1 KEGG: pha:PSHAb0343 hypothetical protein; hypothetical protein 625254 4173519 Patl_0535 Pseudoalteromonas atlantica T6c hypothetical protein YP_660118.1 624415 R 342610 CDS YP_660119.1 109896864 4173520 625702..628728 1 NC_008228.1 KEGG: ilo:IL0583 Oar-like outer membrane protein protein, OmpA family; OmpA family Oar-like outer membrane protein 628728 4173520 Patl_0536 Pseudoalteromonas atlantica T6c OmpA family Oar-like outer membrane protein YP_660119.1 625702 D 342610 CDS YP_660120.1 109896865 4173521 628798..629973 1 NC_008228.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: cps:CPS_1964 endonuclease/exonuclease/phosphatase family protein; endonuclease/exonuclease/phosphatase 629973 4173521 Patl_0537 Pseudoalteromonas atlantica T6c endonuclease/exonuclease/phosphatase YP_660120.1 628798 D 342610 CDS YP_660121.1 109896866 4173522 complement(630064..630528) 1 NC_008228.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 630528 4173522 Patl_0538 Pseudoalteromonas atlantica T6c arginine repressor YP_660121.1 630064 R 342610 CDS YP_660122.1 109896867 4173523 630694..631629 1 NC_008228.1 oxidizes malate to oxaloacetate; malate dehydrogenase 631629 4173523 Patl_0539 Pseudoalteromonas atlantica T6c malate dehydrogenase YP_660122.1 630694 D 342610 CDS YP_660123.1 109896868 4173524 complement(631721..632326) 1 NC_008228.1 KEGG: cps:CPS_4785 hypothetical protein; hypothetical protein 632326 4173524 Patl_0540 Pseudoalteromonas atlantica T6c hypothetical protein YP_660123.1 631721 R 342610 CDS YP_660124.1 109896869 4173525 complement(632464..632910) 1 NC_008228.1 hypothetical protein 632910 4173525 Patl_0541 Pseudoalteromonas atlantica T6c hypothetical protein YP_660124.1 632464 R 342610 CDS YP_660125.1 109896870 4172229 632976..633497 1 NC_008228.1 KEGG: pst:PSPTO3908 hypothetical protein; hypothetical protein 633497 4172229 Patl_0542 Pseudoalteromonas atlantica T6c hypothetical protein YP_660125.1 632976 D 342610 CDS YP_660126.1 109896871 4172230 complement(633647..634747) 1 NC_008228.1 KEGG: hsa:1834 dentin sialophosphoprotein; hypothetical protein 634747 4172230 Patl_0543 Pseudoalteromonas atlantica T6c hypothetical protein YP_660126.1 633647 R 342610 CDS YP_660127.1 109896872 4172231 complement(635057..635401) 1 NC_008228.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF; KEGG: pmu:PM0458 hypothetical HI1723; iron-sulfur cluster assembly accessory protein 635401 4172231 Patl_0544 Pseudoalteromonas atlantica T6c iron-sulfur cluster assembly accessory protein YP_660127.1 635057 R 342610 CDS YP_660128.1 109896873 4172232 complement(635516..636214) 1 NC_008228.1 KEGG: ilo:IL2241 uncharacterized conserved membrane or secreted protein; hypothetical protein 636214 4172232 Patl_0545 Pseudoalteromonas atlantica T6c hypothetical protein YP_660128.1 635516 R 342610 CDS YP_660129.1 109896874 4172233 636328..638007 1 NC_008228.1 PFAM: Cl- channel, voltage gated; KEGG: pha:PSHAa2252 voltage-gated ClC-type chloride channel ClcA; VWA containing CoxE-like protein 638007 4172233 Patl_0546 Pseudoalteromonas atlantica T6c VWA containing CoxE-like protein YP_660129.1 636328 D 342610 CDS YP_660130.1 109896875 4172234 638047..638475 1 NC_008228.1 PFAM: conserved hypothetical protein 701; KEGG: ilo:IL2243 hypothetical protein; hypothetical protein 638475 4172234 Patl_0547 Pseudoalteromonas atlantica T6c hypothetical protein YP_660130.1 638047 D 342610 CDS YP_660131.1 109896876 4172235 639081..639635 1 NC_008228.1 PFAM: GTP cyclohydrolase I; KEGG: psp:PSPPH_1071 GTP cyclohydrolase I; GTP cyclohydrolase I 639635 4172235 Patl_0548 Pseudoalteromonas atlantica T6c GTP cyclohydrolase I YP_660131.1 639081 D 342610 CDS YP_660132.1 109896877 4172236 639866..640855 1 NC_008228.1 PFAM: purine and other phosphorylases, family 1; KEGG: ccr:CC2266 5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase; purine phosphorylase family protein 1 640855 4172236 Patl_0549 Pseudoalteromonas atlantica T6c purine phosphorylase family protein 1 YP_660132.1 639866 D 342610 CDS YP_660133.1 109896878 4172237 complement(640941..641672) 1 NC_008228.1 PFAM: protein of unknown function DUF28; KEGG: vch:VCA0006 hypothetical protein; hypothetical protein 641672 4172237 Patl_0550 Pseudoalteromonas atlantica T6c hypothetical protein YP_660133.1 640941 R 342610 CDS YP_660134.1 109896879 4172238 complement(641780..642886) 1 NC_008228.1 PFAM: AFG1-like ATPase; KEGG: cps:CPS_4344 ATPase, AFG1 family; AFG1-like ATPase 642886 4172238 Patl_0551 Pseudoalteromonas atlantica T6c AFG1-like ATPase YP_660134.1 641780 R 342610 CDS YP_660135.1 109896880 4172239 643130..643570 1 NC_008228.1 KEGG: ilo:IL0412 hypothetical protein; hypothetical protein 643570 4172239 Patl_0552 Pseudoalteromonas atlantica T6c hypothetical protein YP_660135.1 643130 D 342610 CDS YP_660136.1 109896881 4172240 643664..645034 1 NC_008228.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap PDZ/DHR/GLGF; KEGG: son:SO3942 serine protease, HtrA/DegQ/DegS family; protease Do 645034 4172240 Patl_0553 Pseudoalteromonas atlantica T6c protease Do YP_660136.1 643664 D 342610 CDS YP_660137.1 109896882 4172241 645212..646198 1 NC_008228.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap PDZ/DHR/GLGF; KEGG: cps:CPS_4347 serine protease DegS; hypothetical protein 646198 4172241 Patl_0554 Pseudoalteromonas atlantica T6c hypothetical protein YP_660137.1 645212 D 342610 CDS YP_660138.1 109896883 4172242 complement(646307..647566) 1 NC_008228.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 647566 4172242 Patl_0555 Pseudoalteromonas atlantica T6c UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_660138.1 646307 R 342610 CDS YP_660139.1 109896884 4172243 complement(647636..647893) 1 NC_008228.1 PFAM: BolA-like protein; KEGG: sgl:SG0210 hypothetical protein; BolA-like protein 647893 4172243 Patl_0556 Pseudoalteromonas atlantica T6c BolA-like protein YP_660139.1 647636 R 342610 CDS YP_660140.1 109896885 4172244 complement(647921..648253) 1 NC_008228.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: vpa:VP2660 putative anti-sigma B factor antagonist; anti-sigma-factor antagonist 648253 4172244 Patl_0557 Pseudoalteromonas atlantica T6c anti-sigma-factor antagonist YP_660140.1 647921 R 342610 CDS YP_660141.1 109896886 4172245 complement(648254..648895) 1 NC_008228.1 PFAM: toluene tolerance; KEGG: vpa:VP2661 hypothetical protein; toluene tolerance 648895 4172245 Patl_0558 Pseudoalteromonas atlantica T6c toluene tolerance YP_660141.1 648254 R 342610 CDS YP_660142.1 109896887 4172246 complement(648927..649391) 1 NC_008228.1 PFAM: Mammalian cell entry related; KEGG: cps:CPS_4534 mce family protein; hypothetical protein 649391 4172246 Patl_0559 Pseudoalteromonas atlantica T6c hypothetical protein YP_660142.1 648927 R 342610 CDS YP_660143.1 109896888 4172247 complement(649405..650184) 1 NC_008228.1 PFAM: protein of unknown function DUF140; KEGG: ilo:IL0404 ABC-type transport system involved in resistance to organic solvents, permease component; hypothetical protein 650184 4172247 Patl_0560 Pseudoalteromonas atlantica T6c hypothetical protein YP_660143.1 649405 R 342610 CDS YP_660144.1 109896889 4174008 complement(650185..650982) 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: pha:PSHAa2544 transport protein (ABC superfamily, atp-binding); ABC transporter-like protein 650982 4174008 Patl_0561 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_660144.1 650185 R 342610 CDS YP_660145.1 109896890 4174009 651314..652276 1 NC_008228.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: pha:PSHAa2545 Na:Ca transport protein (CacA); CaCA family Na(+)/Ca(+) antiporter 652276 4174009 Patl_0562 Pseudoalteromonas atlantica T6c CaCA family Na(+)/Ca(+) antiporter YP_660145.1 651314 D 342610 CDS YP_660146.1 109896891 4174010 652283..653254 1 NC_008228.1 KEGG: pha:PSHAa2546 D-arabinose 5-phosphate isomerase; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein sugar isomerase (SIS); KpsF/GutQ family protein 653254 4174010 Patl_0563 Pseudoalteromonas atlantica T6c KpsF/GutQ family protein YP_660146.1 652283 D 342610 CDS YP_660147.1 109896892 4174011 653254..653808 1 NC_008228.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: cps:CPS_4539 phosphatase, YrbI family; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 653808 4174011 Patl_0564 Pseudoalteromonas atlantica T6c 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_660147.1 653254 D 342610 CDS YP_660148.1 109896893 4174012 653805..654368 1 NC_008228.1 PFAM: protein of unknown function DUF1239; KEGG: pha:PSHAa2548 hypothetical protein; hypothetical protein 654368 4174012 Patl_0565 Pseudoalteromonas atlantica T6c hypothetical protein YP_660148.1 653805 D 342610 CDS YP_660149.1 109896894 4174013 654409..654930 1 NC_008228.1 PFAM: OstA-like protein; KEGG: ilo:IL0398 hypothetical protein; OstA-like protein 654930 4174013 Patl_0566 Pseudoalteromonas atlantica T6c OstA-like protein YP_660149.1 654409 D 342610 CDS YP_660150.1 109896895 4174014 654930..655655 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: ilo:IL0397 unclassified ABC-type transport system, ATPase component; ABC transporter-like protein 655655 4174014 Patl_0567 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_660150.1 654930 D 342610 CDS YP_660151.1 109896896 4174015 655778..657271 1 NC_008228.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor sigma-54 factor, core-binding region sigma-54, DNA-binding; KEGG: cps:CPS_4543 RNA polymerase sigma-54 factor; RNA polymerase sigma-54 subunit RpoN 657271 4174015 Patl_0568 Pseudoalteromonas atlantica T6c RNA polymerase sigma-54 subunit RpoN YP_660151.1 655778 D 342610 CDS YP_660152.1 109896897 4174016 657297..657584 1 NC_008228.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: ilo:IL0395 S30EA ribosomal protein; sigma 54 modulation protein/ribosomal protein S30EA 657584 4174016 Patl_0569 Pseudoalteromonas atlantica T6c sigma 54 modulation protein/ribosomal protein S30EA YP_660152.1 657297 D 342610 CDS YP_660153.1 109896898 4174017 657600..658043 1 NC_008228.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: vfi:VF0385 nitrogen regulatory IIA protein; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 658043 4174017 Patl_0570 Pseudoalteromonas atlantica T6c PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN YP_660153.1 657600 D 342610 CDS YP_660154.1 109896899 4174018 658046..658891 1 NC_008228.1 PFAM: Uncharacterised P-loop ATPase protein UPF0042; KEGG: cps:CPS_4546 conserved hypothetical protein; hypothetical protein 658891 4174018 Patl_0571 Pseudoalteromonas atlantica T6c hypothetical protein YP_660154.1 658046 D 342610 CDS YP_660155.1 109896900 4174019 658888..659166 1 NC_008228.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: pha:PSHAa2555 phosphocarrier protein NPr (HPr-like), nitrogen-related; HPr family phosphocarrier protein 659166 4174019 Patl_0572 Pseudoalteromonas atlantica T6c HPr family phosphocarrier protein YP_660155.1 658888 D 342610 CDS YP_660156.1 109896901 4174020 complement(659267..660037) 1 NC_008228.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: stm:STM1330 putative DNA/RNA non-specific endonuclease; endonuclease 660037 4174020 Patl_0573 Pseudoalteromonas atlantica T6c endonuclease YP_660156.1 659267 R 342610 CDS YP_660157.1 109896902 4174021 complement(660173..661012) 1 NC_008228.1 PFAM: ApbE-like lipoprotein; KEGG: cps:CPS_2787 ApbE family protein; ApbE-like lipoprotein 661012 4174021 Patl_0574 Pseudoalteromonas atlantica T6c ApbE-like lipoprotein YP_660157.1 660173 R 342610 CDS YP_660158.1 109896903 4174022 complement(661158..662456) 1 NC_008228.1 KEGG: cps:CPS_2788 hypothetical protein; hypothetical protein 662456 4174022 Patl_0575 Pseudoalteromonas atlantica T6c hypothetical protein YP_660158.1 661158 R 342610 CDS YP_660159.1 109896904 4174023 complement(662447..662686) 1 NC_008228.1 KEGG: cps:CPS_2789 putative lipoprotein; putative lipoprotein 662686 4174023 Patl_0576 Pseudoalteromonas atlantica T6c putative lipoprotein YP_660159.1 662447 R 342610 CDS YP_660160.1 109896905 4174024 complement(662691..663209) 1 NC_008228.1 PFAM: Redoxin; KEGG: son:SO2100 thioredoxin family protein; redoxin 663209 4174024 Patl_0577 Pseudoalteromonas atlantica T6c redoxin YP_660160.1 662691 R 342610 CDS YP_660161.1 109896906 4174025 663416..664537 1 NC_008228.1 PFAM: peptidase M28 Nicastrin; KEGG: hch:HCH_01980 predicted aminopeptidase; peptidase M28 664537 4174025 Patl_0578 Pseudoalteromonas atlantica T6c peptidase M28 YP_660161.1 663416 D 342610 CDS YP_660162.1 109896907 4174026 complement(664628..665203) 1 NC_008228.1 PFAM: Helix-turn-helix, type 11; KEGG: pha:PSHAb0510 putative transcriptional regulator ArsR family; type 11 helix-turn-helix protein 665203 4174026 Patl_0579 Pseudoalteromonas atlantica T6c type 11 helix-turn-helix protein YP_660162.1 664628 R 342610 CDS YP_660163.1 109896908 4174027 665706..666269 1 NC_008228.1 PFAM: Lipocalin-like; KEGG: cps:CPS_2173 lipoprotein Blc; Lipocalin-like protein 666269 4174027 Patl_0580 Pseudoalteromonas atlantica T6c Lipocalin-like protein YP_660163.1 665706 D 342610 CDS YP_660164.1 109896909 4173237 666360..666881 1 NC_008228.1 KEGG: cps:CPS_0796 hypothetical protein; hypothetical protein 666881 4173237 Patl_0581 Pseudoalteromonas atlantica T6c hypothetical protein YP_660164.1 666360 D 342610 CDS YP_660165.1 109896910 4173238 667007..667345 1 NC_008228.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: bcz:pE33L466_0444 alkylphosphonate uptake protein; alkylphosphonate utilization operon protein PhnA 667345 4173238 Patl_0582 Pseudoalteromonas atlantica T6c alkylphosphonate utilization operon protein PhnA YP_660165.1 667007 D 342610 CDS YP_660166.1 109896911 4173239 complement(667442..669196) 1 NC_008228.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: cps:CPS_0797 putative hemolysin; phospholipid/glycerol acyltransferase 669196 4173239 Patl_0583 Pseudoalteromonas atlantica T6c phospholipid/glycerol acyltransferase YP_660166.1 667442 R 342610 CDS YP_660167.1 109896912 4173240 669385..670419 1 NC_008228.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 670419 4173240 Patl_0584 Pseudoalteromonas atlantica T6c dihydroorotase YP_660167.1 669385 D 342610 CDS YP_660168.1 109896913 4173241 670419..671243 1 NC_008228.1 KEGG: bba:Bd2855 putative ABC amino acid transporter solute binding protein; amino acid ABC transporter periplasmic protein 671243 4173241 Patl_0585 Pseudoalteromonas atlantica T6c amino acid ABC transporter periplasmic protein YP_660168.1 670419 D 342610 CDS YP_660169.1 109896914 4173242 671295..672158 1 NC_008228.1 KEGG: hch:HCH_05423 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; amino acid ABC transporter periplasmic protein 672158 4173242 Patl_0586 Pseudoalteromonas atlantica T6c amino acid ABC transporter periplasmic protein YP_660169.1 671295 D 342610 CDS YP_660170.1 109896915 4173243 672223..672912 1 NC_008228.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 672912 4173243 Patl_0587 Pseudoalteromonas atlantica T6c enoyl-CoA hydratase YP_660170.1 672223 D 342610 CDS YP_660171.1 109896916 4173244 672941..674320 1 NC_008228.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 674320 4173244 Patl_0588 Pseudoalteromonas atlantica T6c ATP-dependent RNA helicase DbpA YP_660171.1 672941 D 342610 CDS YP_660172.1 109896917 4173245 complement(674404..674742) 1 NC_008228.1 hypothetical protein 674742 4173245 Patl_0589 Pseudoalteromonas atlantica T6c hypothetical protein YP_660172.1 674404 R 342610 CDS YP_660173.1 109896918 4173246 675225..675845 1 NC_008228.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: bha:BH1938 unknown conserved protein in others; dimethylmenaquinone methyltransferase 675845 4173246 Patl_0590 Pseudoalteromonas atlantica T6c dimethylmenaquinone methyltransferase YP_660173.1 675225 D 342610 CDS YP_660174.1 109896919 4173247 675868..677709 1 NC_008228.1 PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase; KEGG: vfi:VFA0509 multidrug resistance ABC transporter ATP-binding and permease protein; ABC transporter-like protein 677709 4173247 Patl_0591 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_660174.1 675868 D 342610 CDS YP_660175.1 109896920 4173249 678242..678619 1 NC_008228.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: ilo:IL0339 preprotein translocase subunit SecE; preprotein translocase subunit SecE 678619 4173249 Patl_0592 Pseudoalteromonas atlantica T6c preprotein translocase subunit SecE YP_660175.1 678242 D 342610 CDS YP_660176.1 109896921 4173250 678622..679194 1 NC_008228.1 KEGG: cps:CPS_4777 transcription termination/antitermination factor NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG KOW; SMART: NGN KOW (Kyrpides, Ouzounis, Woese) motif; NusG antitermination factor 679194 4173250 Patl_0593 Pseudoalteromonas atlantica T6c NusG antitermination factor YP_660176.1 678622 D 342610 CDS YP_660177.1 109896922 4173251 679596..680024 1 NC_008228.1 PFAM: ribosomal protein L11; KEGG: cps:CPS_4773 ribosomal protein L11; 50S ribosomal protein L11 680024 4173251 Patl_0594 Pseudoalteromonas atlantica T6c 50S ribosomal protein L11 YP_660177.1 679596 D 342610 CDS YP_660178.1 109896923 4173252 680028..680729 1 NC_008228.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 680729 rplA 4173252 rplA Pseudoalteromonas atlantica T6c 50S ribosomal protein L1 YP_660178.1 680028 D 342610 CDS YP_660179.1 109896924 4173253 681094..681612 1 NC_008228.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 681612 rplJ 4173253 rplJ Pseudoalteromonas atlantica T6c 50S ribosomal protein L10 YP_660179.1 681094 D 342610 CDS YP_660180.1 109896925 4173254 681668..682039 1 NC_008228.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 682039 rplL 4173254 rplL Pseudoalteromonas atlantica T6c 50S ribosomal protein L7/L12 YP_660180.1 681668 D 342610 CDS YP_660181.1 109896926 4174086 682317..686345 1 NC_008228.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 686345 rpoB 4174086 rpoB Pseudoalteromonas atlantica T6c DNA-directed RNA polymerase subunit beta YP_660181.1 682317 D 342610 CDS YP_660182.1 109896927 4174087 686436..690623 1 NC_008228.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 690623 4174087 Patl_0599 Pseudoalteromonas atlantica T6c DNA-directed RNA polymerase subunit beta' YP_660182.1 686436 D 342610 CDS YP_660183.1 109896928 4174088 690833..691207 1 NC_008228.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 691207 rpsL 4174088 rpsL Pseudoalteromonas atlantica T6c 30S ribosomal protein S12 YP_660183.1 690833 D 342610 CDS YP_660184.1 109896929 4174089 691284..691754 1 NC_008228.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 691754 4174089 Patl_0601 Pseudoalteromonas atlantica T6c 30S ribosomal protein S7 YP_660184.1 691284 D 342610 CDS YP_660185.1 109896930 4174090 691767..693872 1 NC_008228.1 TIGRFAM: translation elongation factor G small GTP-binding protein; PFAM: elongation factor G-like protein synthesis factor, GTP-binding elongation factor Tu, domain 2 elongation factor G, domain IV; KEGG: son:SO0228 elongation factor EF-G; translation elongation factor G 693872 4174090 Patl_0602 Pseudoalteromonas atlantica T6c translation elongation factor G YP_660185.1 691767 D 342610 CDS YP_660186.1 109896931 4174091 693936..695120 1 NC_008228.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 695120 4174091 Patl_0603 Pseudoalteromonas atlantica T6c elongation factor Tu YP_660186.1 693936 D 342610 CDS YP_660187.1 109896932 4174092 696007..697932 1 NC_008228.1 PFAM: histidine kinase, HAMP region chemotaxis sensory transducer; KEGG: son:SO4454 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 697932 4174092 Patl_0604 Pseudoalteromonas atlantica T6c methyl-accepting chemotaxis sensory transducer YP_660187.1 696007 D 342610 CDS YP_660188.1 109896933 4174093 complement(697954..698583) 1 NC_008228.1 PFAM: protein of unknown function UPF0029; KEGG: yps:YPTB0269 hypothetical protein; hypothetical protein 698583 4174093 Patl_0605 Pseudoalteromonas atlantica T6c hypothetical protein YP_660188.1 697954 R 342610 CDS YP_660189.1 109896934 4174094 complement(698816..701434) 1 NC_008228.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 701434 4174094 Patl_0606 Pseudoalteromonas atlantica T6c phosphoenolpyruvate carboxylase YP_660189.1 698816 R 342610 CDS YP_660190.1 109896935 4174095 701738..702358 1 NC_008228.1 PFAM: FKBP-type peptidyl-prolyl isomerase-like peptidylprolyl isomerase, FKBP-type; KEGG: pha:PSHAa1414 FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase); FKBP-type peptidylprolyl isomerase 702358 4174095 Patl_0607 Pseudoalteromonas atlantica T6c FKBP-type peptidylprolyl isomerase YP_660190.1 701738 D 342610 CDS YP_660191.1 109896936 4174096 702556..704121 1 NC_008228.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS Xanthine/uracil/vitamin C permease sulphate transporter; KEGG: ppr:PBPRA1185 putative sulfate permease family protein; sulfate transporter 704121 4174096 Patl_0608 Pseudoalteromonas atlantica T6c sulfate transporter YP_660191.1 702556 D 342610 CDS YP_660192.1 109896937 4174097 complement(704196..704366) 1 NC_008228.1 hypothetical protein 704366 4174097 Patl_0609 Pseudoalteromonas atlantica T6c hypothetical protein YP_660192.1 704196 R 342610 CDS YP_660193.1 109896938 4174098 704745..706373 1 NC_008228.1 PFAM: TrkA-N sodium/hydrogen exchanger; KEGG: cps:CPS_2306 putative glutathione-regulated potassium-efflux system protein; sodium/hydrogen exchanger 706373 4174098 Patl_0610 Pseudoalteromonas atlantica T6c sodium/hydrogen exchanger YP_660193.1 704745 D 342610 CDS YP_660194.1 109896939 4174099 706531..707571 1 NC_008228.1 PFAM: alpha/beta hydrolase fold; KEGG: ilo:IL1807 alpha/beta superfamily hydrolase; alpha/beta hydrolase fold protein 707571 4174099 Patl_0611 Pseudoalteromonas atlantica T6c alpha/beta hydrolase fold protein YP_660194.1 706531 D 342610 CDS YP_660195.1 109896940 4174100 complement(707629..708255) 1 NC_008228.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: cps:CPS_1844 conserved hypothetical protein TIGR00427; multiple antibiotic resistance (MarC)-like protein 708255 4174100 Patl_0612 Pseudoalteromonas atlantica T6c multiple antibiotic resistance (MarC)-like protein YP_660195.1 707629 R 342610 CDS YP_660196.1 109896941 4174101 708470..709135 1 NC_008228.1 TIGRFAM: yecA family protein; yecA family protein 709135 4174101 Patl_0613 Pseudoalteromonas atlantica T6c yecA family protein YP_660196.1 708470 D 342610 CDS YP_660197.1 109896942 4174102 complement(709146..709532) 1 NC_008228.1 KEGG: vvu:VV12887 hypothetical protein; hypothetical protein 709532 4174102 Patl_0614 Pseudoalteromonas atlantica T6c hypothetical protein YP_660197.1 709146 R 342610 CDS YP_660198.1 109896943 4174103 complement(709635..710612) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: pha:PSHAa2463 hypothetical protein; diguanylate cyclase 710612 4174103 Patl_0615 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_660198.1 709635 R 342610 CDS YP_660199.1 109896944 4174104 710884..712671 1 NC_008228.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: ssp:SSP0251 O-acetylhomoserine sulfhydrylase; Cys/Met metabolism pyridoxal-phosphate-dependent protein 712671 4174104 Patl_0616 Pseudoalteromonas atlantica T6c Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_660199.1 710884 D 342610 CDS YP_660200.1 109896945 4174105 712878..714923 1 NC_008228.1 TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase-like DEAD/DEAH box helicase-like; KEGG: pha:PSHAb0119 putative helicase (RecQ-like); ATP-dependent DNA helicase RecQ 714923 4174105 Patl_0617 Pseudoalteromonas atlantica T6c ATP-dependent DNA helicase RecQ YP_660200.1 712878 D 342610 CDS YP_660201.1 109896946 4173640 715336..716499 1 NC_008228.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: cps:CPS_4621 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 716499 4173640 Patl_0618 Pseudoalteromonas atlantica T6c RND family efflux transporter MFP subunit YP_660201.1 715336 D 342610 CDS YP_660202.1 109896947 4173641 716499..719636 1 NC_008228.1 PFAM: acriflavin resistance protein; KEGG: cps:CPS_4620 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 719636 4173641 Patl_0619 Pseudoalteromonas atlantica T6c acriflavin resistance protein YP_660202.1 716499 D 342610 CDS YP_660203.1 109896948 4173642 719786..720373 1 NC_008228.1 PFAM: glutathione S-transferase-like; KEGG: pha:PSHAa2489 glutathione S-transferase enzyme with thioredoxin-like domain; glutathione S-transferase-like protein 720373 4173642 Patl_0620 Pseudoalteromonas atlantica T6c glutathione S-transferase-like protein YP_660203.1 719786 D 342610 CDS YP_660204.1 109896949 4173643 720406..720705 1 NC_008228.1 PFAM: protein of unknown function DUF1244; KEGG: ppu:PP4633 hypothetical protein; hypothetical protein 720705 4173643 Patl_0621 Pseudoalteromonas atlantica T6c hypothetical protein YP_660204.1 720406 D 342610 CDS YP_660205.1 109896950 4173644 721027..721515 1 NC_008228.1 KEGG: cvi:CV2486 hypothetical protein; hypothetical protein 721515 4173644 Patl_0622 Pseudoalteromonas atlantica T6c hypothetical protein YP_660205.1 721027 D 342610 CDS YP_660206.1 109896951 4173645 721719..722087 1 NC_008228.1 PFAM: protein of unknown function DUF413; KEGG: ilo:IL2294 hypothetical protein; hypothetical protein 722087 4173645 Patl_0623 Pseudoalteromonas atlantica T6c hypothetical protein YP_660206.1 721719 D 342610 CDS YP_660207.1 109896952 4173646 722308..724026 1 NC_008228.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme, central region thiamine pyrophosphate enzyme-like TPP binding region; KEGG: ppr:PBPRA0425 putative acetolactate synthase III, largesubunit; acetolactate synthase large subunit 724026 4173646 Patl_0624 Pseudoalteromonas atlantica T6c acetolactate synthase large subunit YP_660207.1 722308 D 342610 CDS YP_660208.1 109896953 4173647 724026..724523 1 NC_008228.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT; KEGG: cps:CPS_3237 acetolactate synthase III, small subunit; acetolactate synthase small subunit 724523 4173647 Patl_0625 Pseudoalteromonas atlantica T6c acetolactate synthase small subunit YP_660208.1 724026 D 342610 CDS YP_660209.1 109896954 4173648 complement(724619..725203) 1 NC_008228.1 PFAM: thymidine kinase; KEGG: vvy:VV1363 thymidine kinase; thymidine kinase 725203 4173648 Patl_0626 Pseudoalteromonas atlantica T6c thymidine kinase YP_660209.1 724619 R 342610 CDS YP_660210.1 109896955 4173649 complement(725314..727350) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: cps:CPS_1138 GGDEF/EAL domain protein; diguanylate cyclase/phosphodiesterase 727350 4173649 Patl_0627 Pseudoalteromonas atlantica T6c diguanylate cyclase/phosphodiesterase YP_660210.1 725314 R 342610 CDS YP_660211.1 109896956 4173650 complement(727478..728119) 1 NC_008228.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: son:SO2852 transcriptional regulator, GntR family; GntR family transcriptional regulator 728119 4173650 Patl_0628 Pseudoalteromonas atlantica T6c GntR family transcriptional regulator YP_660211.1 727478 R 342610 CDS YP_660212.1 109896957 4173651 complement(728129..729325) 1 NC_008228.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; KEGG: xac:XAC4292 benzoate transporter; benzoate transporter 729325 4173651 Patl_0629 Pseudoalteromonas atlantica T6c benzoate transporter YP_660212.1 728129 R 342610 CDS YP_660213.1 109896958 4173652 complement(729431..730285) 1 NC_008228.1 PFAM: Bile acid:sodium symporter; KEGG: syn:sll1428 P3 protein; bile acid:sodium symporter 730285 4173652 Patl_0630 Pseudoalteromonas atlantica T6c bile acid:sodium symporter YP_660213.1 729431 R 342610 CDS YP_660214.1 109896959 4173653 complement(730410..731153) 1 NC_008228.1 KEGG: mag:amb2748 hypothetical protein; hypothetical protein 731153 4173653 Patl_0631 Pseudoalteromonas atlantica T6c hypothetical protein YP_660214.1 730410 R 342610 CDS YP_660215.1 109896960 4173654 complement(731253..732002) 1 NC_008228.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ilo:IL1485 short chain dehydrogenase family protein; short chain dehydrogenase 732002 4173654 Patl_0632 Pseudoalteromonas atlantica T6c short chain dehydrogenase YP_660215.1 731253 R 342610 CDS YP_660216.1 109896961 4173655 complement(732080..732784) 1 NC_008228.1 PFAM: Phosphoglycerate mutase; KEGG: aci:ACIAD1884 putative phosphoglycerate mutase related protein; phosphoglycerate mutase 732784 4173655 Patl_0633 Pseudoalteromonas atlantica T6c phosphoglycerate mutase YP_660216.1 732080 R 342610 CDS YP_660217.1 109896962 4173656 complement(732785..733897) 1 NC_008228.1 PFAM: aminoglycoside phosphotransferase; KEGG: ilo:IL1486 predicted aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 733897 4173656 Patl_0634 Pseudoalteromonas atlantica T6c aminoglycoside phosphotransferase YP_660217.1 732785 R 342610 CDS YP_660218.1 109896963 4173657 complement(733899..735119) 1 NC_008228.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: ilo:IL1487 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase-like protein 735119 4173657 Patl_0635 Pseudoalteromonas atlantica T6c acyl-CoA dehydrogenase-like protein YP_660218.1 733899 R 342610 CDS YP_660219.1 109896964 4173658 735248..736156 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: reu:Reut_A1003 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 736156 4173658 Patl_0636 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_660219.1 735248 D 342610 CDS YP_660220.1 109896965 4172991 complement(736215..737423) 1 NC_008228.1 PFAM: Rh-like protein/ammonium transporter; KEGG: ppr:PBPRB0379 putative ammonium permease; Rh-like protein/ammonium transporter 737423 4172991 Patl_0637 Pseudoalteromonas atlantica T6c Rh-like protein/ammonium transporter YP_660220.1 736215 R 342610 CDS YP_660221.1 109896966 4172992 737823..740459 1 NC_008228.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin putative Ig; KEGG: bja:bll2294 putative alkaline protease; peptidase S8/S53 subtilisin kexin sedolisin 740459 4172992 Patl_0638 Pseudoalteromonas atlantica T6c peptidase S8/S53 subtilisin kexin sedolisin YP_660221.1 737823 D 342610 CDS YP_660222.1 109896967 4172993 740951..741589 1 NC_008228.1 hypothetical protein 741589 4172993 Patl_0639 Pseudoalteromonas atlantica T6c hypothetical protein YP_660222.1 740951 D 342610 CDS YP_660223.1 109896968 4172994 complement(741638..742354) 1 NC_008228.1 KEGG: cps:CPS_2782 hypothetical protein; hypothetical protein 742354 4172994 Patl_0640 Pseudoalteromonas atlantica T6c hypothetical protein YP_660223.1 741638 R 342610 CDS YP_660224.1 109896969 4172995 complement(742351..743109) 1 NC_008228.1 KEGG: cps:CPS_2783 putative membrane protein; hypothetical protein 743109 4172995 Patl_0641 Pseudoalteromonas atlantica T6c hypothetical protein YP_660224.1 742351 R 342610 CDS YP_660225.1 109896970 4172996 complement(743099..743452) 1 NC_008228.1 KEGG: cps:CPS_2784 hypothetical protein; hypothetical protein 743452 4172996 Patl_0642 Pseudoalteromonas atlantica T6c hypothetical protein YP_660225.1 743099 R 342610 CDS YP_660226.1 109896971 4172997 complement(743439..744680) 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: cps:CPS_2785 sensor histidine kinase; sensor signal transduction histidine kinase 744680 4172997 Patl_0643 Pseudoalteromonas atlantica T6c sensor signal transduction histidine kinase YP_660226.1 743439 R 342610 CDS YP_660227.1 109896972 4172998 complement(744779..745447) 1 NC_008228.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: cps:CPS_2786 response regulator; two component transcriptional regulator 745447 4172998 Patl_0644 Pseudoalteromonas atlantica T6c two component transcriptional regulator YP_660227.1 744779 R 342610 CDS YP_660228.1 109896973 4172999 745646..747004 1 NC_008228.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein MgtE integral membrane region MgtE intracellular region; KEGG: ilo:IL0391 Mg/Co/Ni transporter MgtE (contains CBS domain); magnesium transporter 747004 4172999 Patl_0645 Pseudoalteromonas atlantica T6c magnesium transporter YP_660228.1 745646 D 342610 CDS YP_660229.1 109896974 4173000 747008..747874 1 NC_008228.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: eba:ebA4464 hypothetical protein; hypothetical protein 747874 4173000 Patl_0646 Pseudoalteromonas atlantica T6c hypothetical protein YP_660229.1 747008 D 342610 CDS YP_660230.1 109896975 4173001 complement(748009..749178) 1 NC_008228.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 749178 4173001 Patl_0647 Pseudoalteromonas atlantica T6c galactokinase YP_660230.1 748009 R 342610 CDS YP_660231.1 109896976 4173002 complement(749183..750232) 1 NC_008228.1 catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase 750232 4173002 Patl_0648 Pseudoalteromonas atlantica T6c galactose-1-phosphate uridylyltransferase YP_660231.1 749183 R 342610 CDS YP_660232.1 109896977 4173003 complement(750430..751902) 1 NC_008228.1 PFAM: aldehyde dehydrogenase; KEGG: cps:CPS_0634 succinylglutamic semialdehyde dehydrogenase; aldehyde dehydrogenase 751902 4173003 Patl_0649 Pseudoalteromonas atlantica T6c aldehyde dehydrogenase YP_660232.1 750430 R 342610 CDS YP_660233.1 109896978 4173004 complement(751906..752940) 1 NC_008228.1 PFAM: arginine N-succinyltransferase beta subunit; KEGG: cps:CPS_0635 arginine N-succinyltransferase; arginine N-succinyltransferase 752940 4173004 Patl_0650 Pseudoalteromonas atlantica T6c arginine N-succinyltransferase YP_660233.1 751906 R 342610 CDS YP_660234.1 109896979 4173005 complement(752962..754167) 1 NC_008228.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 754167 argD 4173005 argD Pseudoalteromonas atlantica T6c bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_660234.1 752962 R 342610 CDS YP_660235.1 109896980 4173006 complement(754436..755590) 1 NC_008228.1 KEGG: pha:PSHAa0193 hypothetical protein; putative signal transduction protein 755590 4173006 Patl_0652 Pseudoalteromonas atlantica T6c putative signal transduction protein YP_660235.1 754436 R 342610 CDS YP_660236.1 109896981 4173007 complement(755670..756314) 1 NC_008228.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: mta:Moth_1341 glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; glutamine amidotransferase of anthranilate synthase 756314 4173007 Patl_0653 Pseudoalteromonas atlantica T6c glutamine amidotransferase of anthranilate synthase YP_660236.1 755670 R 342610 CDS YP_660237.1 109896982 4173008 756762..757511 1 NC_008228.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: hch:HCH_03950 electron transfer flavoprotein, beta subunit; electron transfer flavoprotein subunit beta 757511 4173008 Patl_0654 Pseudoalteromonas atlantica T6c electron transfer flavoprotein subunit beta YP_660237.1 756762 D 342610 CDS YP_660238.1 109896983 4173009 757537..758466 1 NC_008228.1 PFAM: electron transfer flavoprotein beta-subunit electron transfer flavoprotein, alpha subunit; KEGG: psp:PSPPH_1965 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 758466 4173009 Patl_0655 Pseudoalteromonas atlantica T6c electron transfer flavoprotein subunit alpha YP_660238.1 757537 D 342610 CDS YP_660239.1 109896984 4173010 758487..760247 1 NC_008228.1 PFAM: acyl-CoA dehydrogenase-like; KEGG: cvi:CV3816 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase-like protein 760247 4173010 Patl_0656 Pseudoalteromonas atlantica T6c acyl-CoA dehydrogenase-like protein YP_660239.1 758487 D 342610 CDS YP_660240.1 109896985 4173312 760422..761435 1 NC_008228.1 PFAM: helix-turn-helix, AraC type; KEGG: pfl:PFL_4468 transcriptional regulator, AraC family; AraC family transcriptional regulator 761435 4173312 Patl_0657 Pseudoalteromonas atlantica T6c AraC family transcriptional regulator YP_660240.1 760422 D 342610 CDS YP_660241.1 109896986 4173313 complement(761791..762804) 1 NC_008228.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 762804 4173313 Patl_0658 Pseudoalteromonas atlantica T6c tryptophanyl-tRNA synthetase YP_660241.1 761791 R 342610 CDS YP_660242.1 109896987 4173314 complement(762828..763514) 1 NC_008228.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: son:SO0292 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 763514 4173314 Patl_0659 Pseudoalteromonas atlantica T6c ribulose-phosphate 3-epimerase YP_660242.1 762828 R 342610 CDS YP_660243.1 109896988 4173315 763830..764555 1 NC_008228.1 TIGRFAM: conserved hypothetical protein; KEGG: pha:PSHAa2824 hypothetical protein; hypothetical protein 764555 4173315 Patl_0660 Pseudoalteromonas atlantica T6c hypothetical protein YP_660243.1 763830 D 342610 CDS YP_660244.1 109896989 4173316 764793..765098 1 NC_008228.1 KEGG: son:SO0291 hypothetical protein; hypothetical protein 765098 4173316 Patl_0661 Pseudoalteromonas atlantica T6c hypothetical protein YP_660244.1 764793 D 342610 CDS YP_660245.1 109896990 4173317 765104..765301 1 NC_008228.1 KEGG: son:SO0290 hypothetical protein; hypothetical protein 765301 4173317 Patl_0662 Pseudoalteromonas atlantica T6c hypothetical protein YP_660245.1 765104 D 342610 CDS YP_660246.1 109896991 4173318 complement(765348..766181) 1 NC_008228.1 KEGG: vfi:VF2289 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase 766181 4173318 Patl_0663 Pseudoalteromonas atlantica T6c DNA adenine methylase YP_660246.1 765348 R 342610 CDS YP_660247.1 109896992 4173319 complement(766274..767749) 1 NC_008228.1 KEGG: vfi:VF2290 DamX protein; hypothetical protein 767749 4173319 Patl_0664 Pseudoalteromonas atlantica T6c hypothetical protein YP_660247.1 766274 R 342610 CDS YP_660248.1 109896993 4173320 complement(767936..769003) 1 NC_008228.1 PFAM: 3-dehydroquinate synthase; KEGG: cps:CPS_0473 3-dehydroquinate synthase; 3-dehydroquinate synthase 769003 4173320 Patl_0665 Pseudoalteromonas atlantica T6c 3-dehydroquinate synthase YP_660248.1 767936 R 342610 CDS YP_660249.1 109896994 4173321 complement(769036..769551) 1 NC_008228.1 type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I 769551 aroK 4173321 aroK Pseudoalteromonas atlantica T6c shikimate kinase I YP_660249.1 769036 R 342610 CDS YP_660250.1 109896995 4173322 complement(769786..771528) 1 NC_008228.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein NolW-like Secretin/TonB, short N-terminal; KEGG: son:SO0285 type IV pilus biogenesis protein PilQ; type IV pilus secretin PilQ 771528 4173322 Patl_0667 Pseudoalteromonas atlantica T6c type IV pilus secretin PilQ YP_660250.1 769786 R 342610 CDS YP_660251.1 109896996 4173323 complement(771521..772054) 1 NC_008228.1 PFAM: Pilus assembly protein, PilQ; KEGG: cps:CPS_0470 type IV pilus biogenesis protein PilP; pilus assembly protein, PilQ 772054 4173323 Patl_0668 Pseudoalteromonas atlantica T6c pilus assembly protein, PilQ YP_660251.1 771521 R 342610 CDS YP_660252.1 109896997 4173324 complement(772051..772662) 1 NC_008228.1 PFAM: Pilus assembly protein, PilO; KEGG: cps:CPS_0469 type IV pilus biogenesis protein PilO; pilus assembly protein PilO 772662 4173324 Patl_0669 Pseudoalteromonas atlantica T6c pilus assembly protein PilO YP_660252.1 772051 R 342610 CDS YP_660253.1 109896998 4173325 complement(772663..773244) 1 NC_008228.1 PFAM: Fimbrial assembly; KEGG: pha:PSHAa2719 type IV pilus biogenesis protein PilN; fimbrial assembly 773244 4173325 Patl_0670 Pseudoalteromonas atlantica T6c fimbrial assembly YP_660253.1 772663 R 342610 CDS YP_660254.1 109896999 4173326 complement(773232..774362) 1 NC_008228.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: pha:PSHAa2720 type IV pilus biogenesis protein PilM; type IV pilus assembly protein PilM 774362 4173326 Patl_0671 Pseudoalteromonas atlantica T6c type IV pilus assembly protein PilM YP_660254.1 773232 R 342610 CDS YP_660255.1 109897000 4173327 774617..775849 1 NC_008228.1 PFAM: phage integrase; KEGG: vpa:VP0380 putative integrase; phage integrase 775849 4173327 Patl_0672 Pseudoalteromonas atlantica T6c phage integrase YP_660255.1 774617 D 342610 CDS YP_660256.1 109897001 4173328 complement(776394..777047) 1 NC_008228.1 KEGG: gsu:GSU2774 hypothetical protein; hypothetical protein 777047 4173328 Patl_0673 Pseudoalteromonas atlantica T6c hypothetical protein YP_660256.1 776394 R 342610 CDS YP_660257.1 109897002 4173330 complement(777783..778517) 1 NC_008228.1 hypothetical protein 778517 4173330 Patl_0675 Pseudoalteromonas atlantica T6c hypothetical protein YP_660257.1 777783 R 342610 CDS YP_660258.1 109897003 4172651 complement(779075..779485) 1 NC_008228.1 hypothetical protein 779485 4172651 Patl_0676 Pseudoalteromonas atlantica T6c hypothetical protein YP_660258.1 779075 R 342610 CDS YP_660259.1 109897004 4172652 complement(779593..780189) 1 NC_008228.1 KEGG: yps:YPTB1873 hypothetical protein; hypothetical protein 780189 4172652 Patl_0677 Pseudoalteromonas atlantica T6c hypothetical protein YP_660259.1 779593 R 342610 CDS YP_660260.1 109897005 4172653 complement(780204..780797) 1 NC_008228.1 PFAM: helix-turn-helix motif; XRE family transcriptional regulator 780797 4172653 Patl_0678 Pseudoalteromonas atlantica T6c XRE family transcriptional regulator YP_660260.1 780204 R 342610 CDS YP_660261.1 109897006 4172654 781046..781546 1 NC_008228.1 KEGG: son:SO2988 hypothetical protein; hypothetical protein 781546 4172654 Patl_0679 Pseudoalteromonas atlantica T6c hypothetical protein YP_660261.1 781046 D 342610 CDS YP_660262.1 109897007 4172655 781558..781851 1 NC_008228.1 PFAM: Prophage CP4-57 regulatory; phage transcriptional regulator AlpA 781851 4172655 Patl_0680 Pseudoalteromonas atlantica T6c phage transcriptional regulator AlpA YP_660262.1 781558 D 342610 CDS YP_660263.1 109897008 4172656 781919..782467 1 NC_008228.1 hypothetical protein 782467 4172656 Patl_0681 Pseudoalteromonas atlantica T6c hypothetical protein YP_660263.1 781919 D 342610 CDS YP_660264.1 109897009 4172657 782467..783159 1 NC_008228.1 PFAM: DNA methylase N-4/N-6; KEGG: vch:VCA0447 hemagglutinin associated protein; DNA methylase N-4/N-6 783159 4172657 Patl_0682 Pseudoalteromonas atlantica T6c DNA methylase N-4/N-6 YP_660264.1 782467 D 342610 CDS YP_660265.1 109897010 4172658 783170..783427 1 NC_008228.1 hypothetical protein 783427 4172658 Patl_0683 Pseudoalteromonas atlantica T6c hypothetical protein YP_660265.1 783170 D 342610 CDS YP_660266.1 109897011 4172659 783481..783990 1 NC_008228.1 hypothetical protein 783990 4172659 Patl_0684 Pseudoalteromonas atlantica T6c hypothetical protein YP_660266.1 783481 D 342610 CDS YP_660267.1 109897012 4172660 783983..784516 1 NC_008228.1 hypothetical protein 784516 4172660 Patl_0685 Pseudoalteromonas atlantica T6c hypothetical protein YP_660267.1 783983 D 342610 CDS YP_660268.1 109897013 4172661 784516..784758 1 NC_008228.1 KEGG: bce:BC1874 phage protein; phage protein 784758 4172661 Patl_0686 Pseudoalteromonas atlantica T6c phage protein YP_660268.1 784516 D 342610 CDS YP_660269.1 109897014 4172662 784755..785525 1 NC_008228.1 KEGG: tde:TDE1153 hypothetical protein; hypothetical protein 785525 4172662 Patl_0687 Pseudoalteromonas atlantica T6c hypothetical protein YP_660269.1 784755 D 342610 CDS YP_660270.1 109897015 4172663 785528..788209 1 NC_008228.1 PFAM: bacteriophage replication gene A; KEGG: spt:SPA2623 putative phage gene; bacteriophage replication protein A 788209 4172663 Patl_0688 Pseudoalteromonas atlantica T6c bacteriophage replication protein A YP_660270.1 785528 D 342610 CDS YP_660271.1 109897016 4172664 complement(788244..788855) 1 NC_008228.1 hypothetical protein 788855 4172664 Patl_0689 Pseudoalteromonas atlantica T6c hypothetical protein YP_660271.1 788244 R 342610 CDS YP_660272.1 109897017 4172665 789096..789674 1 NC_008228.1 hypothetical protein 789674 4172665 Patl_0690 Pseudoalteromonas atlantica T6c hypothetical protein YP_660272.1 789096 D 342610 CDS YP_660273.1 109897018 4172666 789735..790508 1 NC_008228.1 hypothetical protein 790508 4172666 Patl_0691 Pseudoalteromonas atlantica T6c hypothetical protein YP_660273.1 789735 D 342610 CDS YP_660274.1 109897019 4172667 complement(790563..790808) 1 NC_008228.1 PFAM: phage transcriptional activator, Ogr/delta; KEGG: spt:SPA2622 putative phage gene; phage transcriptional activator, Ogr/delta 790808 4172667 Patl_0692 Pseudoalteromonas atlantica T6c phage transcriptional activator, Ogr/delta YP_660274.1 790563 R 342610 CDS YP_660275.1 109897020 4172668 790979..791593 1 NC_008228.1 hypothetical protein 791593 4172668 Patl_0693 Pseudoalteromonas atlantica T6c hypothetical protein YP_660275.1 790979 D 342610 CDS YP_660276.1 109897021 4172669 complement(791614..792630) 1 NC_008228.1 TIGRFAM: phage portal protein, PBSX family; PFAM: phage portal protein; KEGG: hch:HCH_00397 phage portal protein, PBSX family; PBSX family phage portal protein 792630 4172669 Patl_0694 Pseudoalteromonas atlantica T6c PBSX family phage portal protein YP_660276.1 791614 R 342610 CDS YP_660277.1 109897022 4172670 complement(792631..794364) 1 NC_008228.1 PFAM: protein of unknown function DUF264 putative terminase ATPase subunit; KEGG: hch:HCH_00396 Mu-like prophage FluMu protein GP28; hypothetical protein 794364 4172670 Patl_0695 Pseudoalteromonas atlantica T6c hypothetical protein YP_660277.1 792631 R 342610 CDS YP_660278.1 109897023 4173428 794593..795474 1 NC_008228.1 PFAM: phage capsid scaffolding; KEGG: hch:HCH_00395 flagellar biosynthesis/type III secretory pathway protein; phage capsid scaffolding 795474 4173428 Patl_0696 Pseudoalteromonas atlantica T6c phage capsid scaffolding YP_660278.1 794593 D 342610 CDS YP_660279.1 109897024 4173429 795529..796563 1 NC_008228.1 TIGRFAM: phage major capsid protein, P2 family; PFAM: phage major capsid protein, P2; KEGG: hch:HCH_06766 phage major capsid protein, P2 family; P2 family phage major capsid protein 796563 4173429 Patl_0697 Pseudoalteromonas atlantica T6c P2 family phage major capsid protein YP_660279.1 795529 D 342610 CDS YP_660280.1 109897025 4173430 796658..797503 1 NC_008228.1 KEGG: hch:HCH_00393 probable phage small terminate subunit; hypothetical protein 797503 4173430 Patl_0698 Pseudoalteromonas atlantica T6c hypothetical protein YP_660280.1 796658 D 342610 CDS YP_660281.1 109897026 4173431 797613..798068 1 NC_008228.1 KEGG: psp:PSPPH_4967 prophage PSPPH06, putative head completion/stabilization protein; prophage PSPPH06 head completion/stabilization protein 798068 4173431 Patl_0699 Pseudoalteromonas atlantica T6c prophage PSPPH06 head completion/stabilization protein YP_660281.1 797613 D 342610 CDS YP_660282.1 109897027 4173432 798068..798526 1 NC_008228.1 KEGG: psp:PSPPH_4966 prophage PSPPH06, putative tail protein; prophage PSPPH06 tail protein 798526 4173432 Patl_0700 Pseudoalteromonas atlantica T6c prophage PSPPH06 tail protein YP_660282.1 798068 D 342610 CDS YP_660283.1 109897028 4173433 798519..799208 1 NC_008228.1 KEGG: hch:HCH_00390 probable phage protein; hypothetical protein 799208 4173433 Patl_0701 Pseudoalteromonas atlantica T6c hypothetical protein YP_660283.1 798519 D 342610 CDS YP_660284.1 109897029 4173434 799224..800330 1 NC_008228.1 KEGG: hch:HCH_06772 probable phage protein; hypothetical protein 800330 4173434 Patl_0702 Pseudoalteromonas atlantica T6c hypothetical protein YP_660284.1 799224 D 342610 CDS YP_660285.1 109897030 4173435 800334..800783 1 NC_008228.1 KEGG: psp:PSPPH_4963 prophage PSPPH06, putative tail tube protein; prophage PSPPH06 tail tube protein 800783 4173435 Patl_0703 Pseudoalteromonas atlantica T6c prophage PSPPH06 tail tube protein YP_660285.1 800334 D 342610 CDS YP_660286.1 109897031 4173436 800784..801383 1 NC_008228.1 KEGG: hch:HCH_06774 hypothetical protein; hypothetical protein 801383 4173436 Patl_0704 Pseudoalteromonas atlantica T6c hypothetical protein YP_660286.1 800784 D 342610 CDS YP_660287.1 109897032 4173437 801380..801865 1 NC_008228.1 KEGG: hch:HCH_00385 hypothetical protein; hypothetical protein 801865 4173437 Patl_0705 Pseudoalteromonas atlantica T6c hypothetical protein YP_660287.1 801380 D 342610 CDS YP_660288.1 109897033 4173438 801877..802167 1 NC_008228.1 KEGG: hch:HCH_04562 hypothetical protein; hypothetical protein 802167 4173438 Patl_0706 Pseudoalteromonas atlantica T6c hypothetical protein YP_660288.1 801877 D 342610 CDS YP_660289.1 109897034 4173439 802206..802499 1 NC_008228.1 KEGG: hch:HCH_00383 probable phage protein; hypothetical protein 802499 4173439 Patl_0707 Pseudoalteromonas atlantica T6c hypothetical protein YP_660289.1 802206 D 342610 CDS YP_660290.1 109897035 4173440 802520..802660 1 NC_008228.1 hypothetical protein 802660 4173440 Patl_0708 Pseudoalteromonas atlantica T6c hypothetical protein YP_660290.1 802520 D 342610 CDS YP_660291.1 109897036 4173441 802724..804853 1 NC_008228.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: hch:HCH_00382 probable phage protein; TP901 family phage tail tape measure protein 804853 4173441 Patl_0709 Pseudoalteromonas atlantica T6c TP901 family phage tail tape measure protein YP_660291.1 802724 D 342610 CDS YP_660292.1 109897037 4173442 804853..805188 1 NC_008228.1 hypothetical protein 805188 4173442 Patl_0710 Pseudoalteromonas atlantica T6c hypothetical protein YP_660292.1 804853 D 342610 CDS YP_660293.1 109897038 4173443 805202..805984 1 NC_008228.1 hypothetical protein 805984 4173443 Patl_0711 Pseudoalteromonas atlantica T6c hypothetical protein YP_660293.1 805202 D 342610 CDS YP_660294.1 109897039 4173444 805988..807892 1 NC_008228.1 KEGG: tdn:Tmden_1716 hemolysin-type calcium-binding region; hypothetical protein 807892 4173444 Patl_0712 Pseudoalteromonas atlantica T6c hypothetical protein YP_660294.1 805988 D 342610 CDS YP_660295.1 109897040 4173445 807892..808287 1 NC_008228.1 KEGG: hch:HCH_00381 probable phage protein; hypothetical protein 808287 4173445 Patl_0713 Pseudoalteromonas atlantica T6c hypothetical protein YP_660295.1 807892 D 342610 CDS YP_660296.1 109897041 4173446 808280..809443 1 NC_008228.1 KEGG: hch:HCH_00380 uncharacterized phage Mu protein GP47-like protein; phage Mu protein GP47-like protein 809443 4173446 Patl_0714 Pseudoalteromonas atlantica T6c phage Mu protein GP47-like protein YP_660296.1 808280 D 342610 CDS YP_660297.1 109897042 4172171 809440..809970 1 NC_008228.1 KEGG: yps:YPTB3156 putative bacteriophage protein; putative bacteriophage protein 809970 4172171 Patl_0715 Pseudoalteromonas atlantica T6c putative bacteriophage protein YP_660297.1 809440 D 342610 CDS YP_660298.1 109897043 4172172 809960..810709 1 NC_008228.1 KEGG: pst:PSPTO4006 tail fiber protein H, putative; hypothetical protein 810709 4172172 Patl_0716 Pseudoalteromonas atlantica T6c hypothetical protein YP_660298.1 809960 D 342610 CDS YP_660299.1 109897044 4172173 810706..811911 1 NC_008228.1 hypothetical protein 811911 4172173 Patl_0717 Pseudoalteromonas atlantica T6c hypothetical protein YP_660299.1 810706 D 342610 CDS YP_660300.1 109897045 4172174 811913..812518 1 NC_008228.1 hypothetical protein 812518 4172174 Patl_0718 Pseudoalteromonas atlantica T6c hypothetical protein YP_660300.1 811913 D 342610 CDS YP_660301.1 109897046 4172175 812536..813276 1 NC_008228.1 KEGG: yps:YPTB3159 possible bacteriophage protein; hypothetical protein 813276 4172175 Patl_0719 Pseudoalteromonas atlantica T6c hypothetical protein YP_660301.1 812536 D 342610 CDS YP_660302.1 109897047 4172176 813276..813812 1 NC_008228.1 KEGG: hch:HCH_06785 probable phage protein; hypothetical protein 813812 4172176 Patl_0720 Pseudoalteromonas atlantica T6c hypothetical protein YP_660302.1 813276 D 342610 CDS YP_660303.1 109897048 4172177 813802..814479 1 NC_008228.1 KEGG: hch:HCH_00374 hypothetical protein; hypothetical protein 814479 4172177 Patl_0721 Pseudoalteromonas atlantica T6c hypothetical protein YP_660303.1 813802 D 342610 CDS YP_660304.1 109897049 4172178 814473..815438 1 NC_008228.1 KEGG: hch:HCH_06787 hypothetical protein; hypothetical protein 815438 4172178 Patl_0722 Pseudoalteromonas atlantica T6c hypothetical protein YP_660304.1 814473 D 342610 CDS YP_660305.1 109897050 4172179 816009..818609 1 NC_008228.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51 penicillin-binding protein, transpeptidase; KEGG: vpa:VP2751 penicillin-binding protein 1A; 1A family penicillin-binding protein 818609 4172179 Patl_0723 Pseudoalteromonas atlantica T6c 1A family penicillin-binding protein YP_660305.1 816009 D 342610 CDS YP_660306.1 109897051 4172180 818799..820493 1 NC_008228.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 820493 4172180 Patl_0724 Pseudoalteromonas atlantica T6c malate dehydrogenase YP_660306.1 818799 D 342610 CDS YP_660307.1 109897052 4172182 821162..823021 1 NC_008228.1 PFAM: phage integrase; KEGG: vpa:VP0643 hypothetical protein; phage integrase 823021 4172182 Patl_0725 Pseudoalteromonas atlantica T6c phage integrase YP_660307.1 821162 D 342610 CDS YP_660308.1 109897053 4172183 823247..824323 1 NC_008228.1 type II site-specific deoxyribonuclease 824323 4172183 Patl_0726 Pseudoalteromonas atlantica T6c type II site-specific deoxyribonuclease YP_660308.1 823247 D 342610 CDS YP_660309.1 109897054 4172184 complement(824348..825466) 1 NC_008228.1 KEGG: vch:VCA0198 site-specific DNA-methyltransferase, putative; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase 825466 4172184 Patl_0727 Pseudoalteromonas atlantica T6c DNA-cytosine methyltransferase YP_660309.1 824348 R 342610 CDS YP_660310.1 109897055 4172185 complement(826174..826650) 1 NC_008228.1 KEGG: son:SO3886 hypothetical protein; hypothetical protein 826650 4172185 Patl_0728 Pseudoalteromonas atlantica T6c hypothetical protein YP_660310.1 826174 R 342610 CDS YP_660311.1 109897056 4172186 complement(826668..828674) 1 NC_008228.1 PFAM: AAA ATPase, central region; SMART: ATPase; KEGG: son:SO3885 ATPase, AAA family; ATPase AAA 828674 4172186 Patl_0729 Pseudoalteromonas atlantica T6c ATPase AAA YP_660311.1 826668 R 342610 CDS YP_660312.1 109897057 4172187 complement(828671..829588) 1 NC_008228.1 PFAM: phage integrase; KEGG: son:SO3884 site-specific recombinase, phage integrase family; phage integrase 829588 4172187 Patl_0730 Pseudoalteromonas atlantica T6c phage integrase YP_660312.1 828671 R 342610 CDS YP_660313.1 109897058 4172188 complement(829739..830452) 1 NC_008228.1 hypothetical protein 830452 4172188 Patl_0731 Pseudoalteromonas atlantica T6c hypothetical protein YP_660313.1 829739 R 342610 CDS YP_660314.1 109897059 4172189 830725..833514 1 NC_008228.1 PFAM: UvrD/REP helicase; KEGG: mpn:MPN340 DNA helicase PcrA; UvrD/REP helicase 833514 4172189 Patl_0732 Pseudoalteromonas atlantica T6c UvrD/REP helicase YP_660314.1 830725 D 342610 CDS YP_660315.1 109897060 4173084 833783..835168 1 NC_008228.1 KEGG: cps:CPS_0493 hypothetical protein; hypothetical protein 835168 4173084 Patl_0733 Pseudoalteromonas atlantica T6c hypothetical protein YP_660315.1 833783 D 342610 CDS YP_660316.1 109897061 4173085 835155..835778 1 NC_008228.1 hypothetical protein 835778 4173085 Patl_0734 Pseudoalteromonas atlantica T6c hypothetical protein YP_660316.1 835155 D 342610 CDS YP_660317.1 109897062 4173086 836214..837404 1 NC_008228.1 KEGG: lic:LIC13331 histidine kinase sensor protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold; SMART: PAS PAC motif; PAS/PAC sensor signal transduction histidine kinase 837404 4173086 Patl_0735 Pseudoalteromonas atlantica T6c PAS/PAC sensor signal transduction histidine kinase YP_660317.1 836214 D 342610 CDS YP_660318.1 109897063 4173087 complement(837355..837951) 1 NC_008228.1 PFAM: regulatory protein, TetR; KEGG: hch:HCH_03535 transcriptional regulator; TetR family transcriptional regulator 837951 4173087 Patl_0736 Pseudoalteromonas atlantica T6c TetR family transcriptional regulator YP_660318.1 837355 R 342610 CDS YP_660319.1 109897064 4173088 838095..839189 1 NC_008228.1 KEGG: hch:HCH_03536 predicted Zn-dependent hydrolase of the beta-lactamase fold; Zn-dependent hydrolase 839189 4173088 Patl_0737 Pseudoalteromonas atlantica T6c Zn-dependent hydrolase YP_660319.1 838095 D 342610 CDS YP_660320.1 109897065 4173089 complement(839337..842504) 1 NC_008228.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pca:Pcar_1100 hypothetical protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein 842504 4173089 Patl_0738 Pseudoalteromonas atlantica T6c hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_660320.1 839337 R 342610 CDS YP_660321.1 109897066 4173090 complement(842517..843632) 1 NC_008228.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: lpn:lpg2177 HlyD family secretion protein; RND family efflux transporter MFP subunit 843632 4173090 Patl_0739 Pseudoalteromonas atlantica T6c RND family efflux transporter MFP subunit YP_660321.1 842517 R 342610 CDS YP_660322.1 109897067 4173091 complement(843979..845463) 1 NC_008228.1 KEGG: cps:CPS_0457 hypothetical protein; hypothetical protein 845463 4173091 Patl_0740 Pseudoalteromonas atlantica T6c hypothetical protein YP_660322.1 843979 R 342610 CDS YP_660323.1 109897068 4173092 845676..846164 1 NC_008228.1 KEGG: pha:PSHAb0131 putative thioredoxin family protein; putative thioredoxin family protein 846164 4173092 Patl_0741 Pseudoalteromonas atlantica T6c putative thioredoxin family protein YP_660323.1 845676 D 342610 CDS YP_660324.1 109897069 4173093 complement(846470..846901) 1 NC_008228.1 PFAM: OsmC-like protein; KEGG: eli:ELI_14070 osmotically inducible protein C; OsmC-like protein 846901 4173093 Patl_0742 Pseudoalteromonas atlantica T6c OsmC-like protein YP_660324.1 846470 R 342610 CDS YP_660325.1 109897070 4173094 complement(847294..847944) 1 NC_008228.1 PFAM: regulatory protein, TetR; KEGG: wsu:WS0767 transcription regulator protein; TetR family transcriptional regulator 847944 4173094 Patl_0743 Pseudoalteromonas atlantica T6c TetR family transcriptional regulator YP_660325.1 847294 R 342610 CDS YP_660326.1 109897071 4173095 848078..849169 1 NC_008228.1 PFAM: secretion protein HlyD; KEGG: rru:Rru_A0156 secretion protein HlyD; secretion protein HlyD 849169 4173095 Patl_0744 Pseudoalteromonas atlantica T6c secretion protein HlyD YP_660326.1 848078 D 342610 CDS YP_660327.1 109897072 4173096 849274..850827 1 NC_008228.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: atc:AGR_L_781 multidrug resistance protein B; EmrB/QacA family drug resistance transporter 850827 4173096 Patl_0745 Pseudoalteromonas atlantica T6c EmrB/QacA family drug resistance transporter YP_660327.1 849274 D 342610 CDS YP_660328.1 109897073 4173097 850992..851579 1 NC_008228.1 KEGG: pha:PSHAa1583 peptide methionine sulfoxide reductase MsrA 2 (protein-methionine-S-oxide reductase 2) (peptide Met(O) reductase 2); TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 851579 4173097 Patl_0746 Pseudoalteromonas atlantica T6c peptide methionine sulfoxide reductase YP_660328.1 850992 D 342610 CDS YP_660329.1 109897074 4173098 complement(851672..852799) 1 NC_008228.1 TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: ilo:IL2000 carboxynorspermidine decarboxylase; carboxynorspermidine decarboxylase 852799 4173098 Patl_0747 Pseudoalteromonas atlantica T6c carboxynorspermidine decarboxylase YP_660329.1 851672 R 342610 CDS YP_660330.1 109897075 4173099 complement(852899..854101) 1 NC_008228.1 PFAM: Saccharopine dehydrogenase; KEGG: ilo:IL1999 carboxynorspermidine dehydrogenase; saccharopine dehydrogenase 854101 4173099 Patl_0748 Pseudoalteromonas atlantica T6c saccharopine dehydrogenase YP_660330.1 852899 R 342610 CDS YP_660331.1 109897076 4173100 854375..854626 1 NC_008228.1 KEGG: hch:HCH_06873 predicted membrane protein; membrane protein 854626 4173100 Patl_0749 Pseudoalteromonas atlantica T6c membrane protein YP_660331.1 854375 D 342610 CDS YP_660332.1 109897077 4173101 complement(854956..855519) 1 NC_008228.1 KEGG: hch:HCH_06994 predicted ATPase/kinase involved in NAD metabolism; NAD metabolism ATPase/kinase 855519 4173101 Patl_0750 Pseudoalteromonas atlantica T6c NAD metabolism ATPase/kinase YP_660332.1 854956 R 342610 CDS YP_660333.1 109897078 4173102 complement(855570..856208) 1 NC_008228.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: hch:HCH_06995 nicotinamide mononucleotide transporter; nicotinamide mononucleotide transporter PnuC 856208 4173102 Patl_0751 Pseudoalteromonas atlantica T6c nicotinamide mononucleotide transporter PnuC YP_660333.1 855570 R 342610 CDS YP_660334.1 109897079 4173930 complement(856205..857311) 1 NC_008228.1 PFAM: Kelch repeat Kelch; KEGG: mmu:50868 kelch-like ECH-associated protein 1; kelch repeat-containing protein 857311 4173930 Patl_0752 Pseudoalteromonas atlantica T6c kelch repeat-containing protein YP_660334.1 856205 R 342610 CDS YP_660335.1 109897080 4173931 complement(857399..858355) 1 NC_008228.1 KEGG: pha:PSHAa2700 D-cysteine desulfhydrase, PLP-dependent enzyme; D-cysteine desulfhydrase 858355 4173931 Patl_0753 Pseudoalteromonas atlantica T6c D-cysteine desulfhydrase YP_660335.1 857399 R 342610 CDS YP_660336.1 109897081 4173932 complement(858394..859446) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: rpb:RPB_4536 diguanylate cyclase; diguanylate cyclase 859446 4173932 Patl_0754 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_660336.1 858394 R 342610 CDS YP_660337.1 109897082 4173933 complement(859543..860253) 1 NC_008228.1 KEGG: cps:CPS_2539 ZIP zinc transporter family protein; ZIP zinc transporter family protein 860253 4173933 Patl_0755 Pseudoalteromonas atlantica T6c ZIP zinc transporter family protein YP_660337.1 859543 R 342610 CDS YP_660338.1 109897083 4173934 860506..860895 1 NC_008228.1 KEGG: lpf:lpl2164 hypothetical protein; hypothetical protein 860895 4173934 Patl_0756 Pseudoalteromonas atlantica T6c hypothetical protein YP_660338.1 860506 D 342610 CDS YP_660339.1 109897084 4173935 860913..862352 1 NC_008228.1 PFAM: MscS Mechanosensitive ion channel; KEGG: sil:SPO3437 mechanosensitive ion channel family protein; mechanosensitive ion channel protein MscS 862352 4173935 Patl_0757 Pseudoalteromonas atlantica T6c mechanosensitive ion channel protein MscS YP_660339.1 860913 D 342610 CDS YP_660340.1 109897085 4173936 complement(862411..864144) 1 NC_008228.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 864144 aceK 4173936 aceK Pseudoalteromonas atlantica T6c bifunctional isocitrate dehydrogenase kinase/phosphatase protein YP_660340.1 862411 R 342610 CDS YP_660341.1 109897086 4173937 864453..865283 1 NC_008228.1 KEGG: vfi:VF1334 oxalate/formate antiporter; oxalate/formate antiporter 865283 4173937 Patl_0759 Pseudoalteromonas atlantica T6c oxalate/formate antiporter YP_660341.1 864453 D 342610 CDS YP_660342.1 109897087 4173938 865666..866388 1 NC_008228.1 hypothetical protein 866388 4173938 Patl_0760 Pseudoalteromonas atlantica T6c hypothetical protein YP_660342.1 865666 D 342610 CDS YP_660343.1 109897088 4173939 complement(866410..869055) 1 NC_008228.1 PFAM: regulatory protein, LuxR; KEGG: mlo:mll4526 transcriptional regulatory; LuxR family transcriptional regulator 869055 4173939 Patl_0761 Pseudoalteromonas atlantica T6c LuxR family transcriptional regulator YP_660343.1 866410 R 342610 CDS YP_660344.1 109897089 4173940 869318..869788 1 NC_008228.1 KEGG: rba:RB11490 conserved hypothetical protein-putative transmembrane protein; putative transmembrane protein 869788 4173940 Patl_0762 Pseudoalteromonas atlantica T6c putative transmembrane protein YP_660344.1 869318 D 342610 CDS YP_660345.1 109897090 4173941 869785..870072 1 NC_008228.1 hypothetical protein 870072 4173941 Patl_0763 Pseudoalteromonas atlantica T6c hypothetical protein YP_660345.1 869785 D 342610 CDS YP_660346.1 109897091 4173942 complement(870147..870563) 1 NC_008228.1 PFAM: BLUF domain containing protein; KEGG: tel:tll0078 hypothetical protein; BLUF domain-containing protein 870563 4173942 Patl_0764 Pseudoalteromonas atlantica T6c BLUF domain-containing protein YP_660346.1 870147 R 342610 CDS YP_660347.1 109897092 4173943 870665..872470 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: cps:CPS_3608 sensor histidine kinase; histidine kinase 872470 4173943 Patl_0765 Pseudoalteromonas atlantica T6c histidine kinase YP_660347.1 870665 D 342610 CDS YP_660348.1 109897093 4173944 872901..874967 1 NC_008228.1 PFAM: Catalase-related Catalase-like; KEGG: noc:Noc_1165 catalase; catalase 874967 4173944 Patl_0766 Pseudoalteromonas atlantica T6c catalase YP_660348.1 872901 D 342610 CDS YP_660349.1 109897094 4173945 875474..878125 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: eli:ELI_00460 TonB-dependent receptor; TonB-dependent receptor 878125 4173945 Patl_0767 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_660349.1 875474 D 342610 CDS YP_660350.1 109897095 4173946 878245..880236 1 NC_008228.1 PFAM: sulfotransferase TPR repeat; SMART: Tetratricopeptide region; KEGG: eli:ELI_00455 TPR domain protein; sulfotransferase 880236 4173946 Patl_0768 Pseudoalteromonas atlantica T6c sulfotransferase YP_660350.1 878245 D 342610 CDS YP_660351.1 109897096 4173947 complement(880886..881620) 1 NC_008228.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_CH03352 probable 3-oxoacyl-[acyl-carrier-protein] reductase protein; short-chain dehydrogenase/reductase SDR 881620 4173947 Patl_0769 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_660351.1 880886 R 342610 CDS YP_660352.1 109897097 4173948 882028..883005 1 NC_008228.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:bll6834 probable ABC transporter substrate-binding protein; TRAP dicarboxylate transporter subunit DctP 883005 4173948 Patl_0770 Pseudoalteromonas atlantica T6c TRAP dicarboxylate transporter subunit DctP YP_660352.1 882028 D 342610 CDS YP_660353.1 109897098 4173949 883008..883532 1 NC_008228.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: bja:bll6833 probable ABC transporter permease protein; tripartite ATP-independent periplasmic transporter DctQ 883532 4173949 Patl_0771 Pseudoalteromonas atlantica T6c tripartite ATP-independent periplasmic transporter DctQ YP_660353.1 883008 D 342610 CDS YP_660354.1 109897099 4174106 883535..884815 1 NC_008228.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bja:bll6832 probable ABC transporter permease protein; TRAP dicarboxylate transporter subunit DctM 884815 4174106 Patl_0772 Pseudoalteromonas atlantica T6c TRAP dicarboxylate transporter subunit DctM YP_660354.1 883535 D 342610 CDS YP_660355.1 109897100 4174107 884901..885614 1 NC_008228.1 PFAM: helix-turn-helix, AraC type; KEGG: vvy:VVA1522 AraC-type DNA-binding domain-containing protein; AraC family transcriptional regulator 885614 4174107 Patl_0773 Pseudoalteromonas atlantica T6c AraC family transcriptional regulator YP_660355.1 884901 D 342610 CDS YP_660356.1 109897101 4174108 885726..886691 1 NC_008228.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: vvu:VV21027 permease of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 886691 4174108 Patl_0774 Pseudoalteromonas atlantica T6c hypothetical protein YP_660356.1 885726 D 342610 CDS YP_660357.1 109897102 4174109 887034..888035 1 NC_008228.1 TIGRFAM: PEP motif putative anchor-like; PFAM: protein of unknown function DUF1555; PEP domain-containing protein 888035 4174109 Patl_0775 Pseudoalteromonas atlantica T6c PEP domain-containing protein YP_660357.1 887034 D 342610 CDS YP_660358.1 109897103 4174110 complement(888142..890079) 1 NC_008228.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 890079 4174110 Patl_0776 Pseudoalteromonas atlantica T6c DNA topoisomerase III YP_660358.1 888142 R 342610 CDS YP_660359.1 109897104 4174111 890327..892759 1 NC_008228.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rba:RB1828 hypothetical protein-signal peptide and transmembrane prediction; twin-arginine translocation pathway signal protein 892759 4174111 Patl_0777 Pseudoalteromonas atlantica T6c twin-arginine translocation pathway signal protein YP_660359.1 890327 D 342610 CDS YP_660360.1 109897105 4174112 893269..894993 1 NC_008228.1 KEGG: rba:RB2404 hypothetical protein-transmembrane prediction; transmembrane prediction 894993 4174112 Patl_0778 Pseudoalteromonas atlantica T6c transmembrane prediction YP_660360.1 893269 D 342610 CDS YP_660361.1 109897106 4174113 895003..896505 1 NC_008228.1 PFAM: Mannitol dehydrogenase-like Mannitol dehydrogenase rossman-like; KEGG: rba:RB2403 D-mannonate oxidoreductase; mannitol dehydrogenase-like protein 896505 4174113 Patl_0779 Pseudoalteromonas atlantica T6c mannitol dehydrogenase-like protein YP_660361.1 895003 D 342610 CDS YP_660362.1 109897107 4174114 complement(896649..898076) 1 NC_008228.1 KEGG: son:SO2189 conserved hypothetical protein; hypothetical protein 898076 4174114 Patl_0780 Pseudoalteromonas atlantica T6c hypothetical protein YP_660362.1 896649 R 342610 CDS YP_660363.1 109897108 4174115 898288..899181 1 NC_008228.1 KEGG: aae:aq_1923 putative protein; hypothetical protein 899181 4174115 Patl_0781 Pseudoalteromonas atlantica T6c hypothetical protein YP_660363.1 898288 D 342610 CDS YP_660364.1 109897109 4174116 complement(899207..899818) 1 NC_008228.1 KEGG: pha:PSHAa2197 hypothetical protein; hypothetical protein 899818 4174116 Patl_0782 Pseudoalteromonas atlantica T6c hypothetical protein YP_660364.1 899207 R 342610 CDS YP_660365.1 109897110 4174117 complement(899820..901406) 1 NC_008228.1 KEGG: pha:PSHAa2198 hypothetical protein; hypothetical protein 901406 4174117 Patl_0783 Pseudoalteromonas atlantica T6c hypothetical protein YP_660365.1 899820 R 342610 CDS YP_660366.1 109897111 4174118 complement(901572..903071) 1 NC_008228.1 PFAM: metallophosphoesterase; KEGG: oih:OB0802 hypothetical protein; metallophosphoesterase 903071 4174118 Patl_0784 Pseudoalteromonas atlantica T6c metallophosphoesterase YP_660366.1 901572 R 342610 CDS YP_660367.1 109897112 4174119 complement(903211..905700) 1 NC_008228.1 PFAM: TonB-dependent receptor Secretin/TonB, short N-terminal TonB-dependent receptor, plug; KEGG: nar:Saro_0250 TonB-dependent receptor; TonB-dependent receptor, plug 905700 4174119 Patl_0785 Pseudoalteromonas atlantica T6c TonB-dependent receptor, plug YP_660367.1 903211 R 342610 CDS YP_660368.1 109897113 4174120 complement(905871..907022) 1 NC_008228.1 PFAM: FecR protein; KEGG: ppu:PP0866 transmembrane sensor, putative; putative FecR protein 907022 4174120 Patl_0786 Pseudoalteromonas atlantica T6c putative FecR protein YP_660368.1 905871 R 342610 CDS YP_660369.1 109897114 4174121 complement(907019..907693) 1 NC_008228.1 PFAM: sigma-70 region 2 Sigma-70, region 4 type 2; KEGG: pfo:Pfl_4345 sigma-24 (FecI); ECF subfamily RNA polymerase sigma-24 factor 907693 4174121 Patl_0787 Pseudoalteromonas atlantica T6c ECF subfamily RNA polymerase sigma-24 factor YP_660369.1 907019 R 342610 CDS YP_660370.1 109897115 4174122 complement(907936..908778) 1 NC_008228.1 hypothetical protein 908778 4174122 Patl_0788 Pseudoalteromonas atlantica T6c hypothetical protein YP_660370.1 907936 R 342610 CDS YP_660371.1 109897116 4174123 complement(909153..909995) 1 NC_008228.1 hypothetical protein 909995 4174123 Patl_0789 Pseudoalteromonas atlantica T6c hypothetical protein YP_660371.1 909153 R 342610 CDS YP_660372.1 109897117 4174124 complement(910274..910672) 1 NC_008228.1 TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: ret:RHE_CH00191 cytidine deaminase protein; cytidine deaminase 910672 4174124 Patl_0790 Pseudoalteromonas atlantica T6c cytidine deaminase YP_660372.1 910274 R 342610 CDS YP_660373.1 109897118 4173103 910873..911784 1 NC_008228.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 911784 4173103 Patl_0791 Pseudoalteromonas atlantica T6c lipoprotein NlpI YP_660373.1 910873 D 342610 CDS YP_660374.1 109897119 4173104 911824..913152 1 NC_008228.1 KEGG: pha:PSHAa1003 hypothetical protein; hypothetical protein 913152 4173104 Patl_0792 Pseudoalteromonas atlantica T6c hypothetical protein YP_660374.1 911824 D 342610 CDS YP_660375.1 109897120 4173105 913252..914310 1 NC_008228.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 914310 4173105 Patl_0793 Pseudoalteromonas atlantica T6c quinolinate synthetase YP_660375.1 913252 D 342610 CDS YP_660376.1 109897121 4173106 914423..915016 1 NC_008228.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3 beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: vvy:VVA1076 CbbY family protein; beta-phosphoglucomutase family hydrolase 915016 4173106 Patl_0794 Pseudoalteromonas atlantica T6c beta-phosphoglucomutase family hydrolase YP_660376.1 914423 D 342610 CDS YP_660377.1 109897122 4173108 complement(915921..917570) 1 NC_008228.1 PFAM: sulfatase; KEGG: rba:RB200 mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase); sulfatase 917570 4173108 Patl_0795 Pseudoalteromonas atlantica T6c sulfatase YP_660377.1 915921 R 342610 CDS YP_660378.1 109897123 4173109 917823..918581 1 NC_008228.1 PFAM: Helix-turn-helix, type 11; SMART: regulatory proteins, IclR; KEGG: xcv:XCV4290 transcriptional regulator, IclR family; IclR family transcriptional regulator 918581 4173109 Patl_0796 Pseudoalteromonas atlantica T6c IclR family transcriptional regulator YP_660378.1 917823 D 342610 CDS YP_660379.1 109897124 4173110 919173..920189 1 NC_008228.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: bcl:ABC0438 Zn-dependent alcohol dehydrogenase; alcohol dehydrogenase GroES-like protein 920189 4173110 Patl_0797 Pseudoalteromonas atlantica T6c alcohol dehydrogenase GroES-like protein YP_660379.1 919173 D 342610 CDS YP_660380.1 109897125 4173111 920189..921019 1 NC_008228.1 PFAM: amidohydrolase 2; KEGG: rba:RB9860 hypothetical protein; amidohydrolase 2 921019 4173111 Patl_0798 Pseudoalteromonas atlantica T6c amidohydrolase 2 YP_660380.1 920189 D 342610 CDS YP_660381.1 109897126 4173112 921030..921968 1 NC_008228.1 PFAM: aldo/keto reductase; KEGG: ath:At4g33670 L-galactose dehydrogenase (L-GalDH); aldo/keto reductase 921968 4173112 Patl_0799 Pseudoalteromonas atlantica T6c aldo/keto reductase YP_660381.1 921030 D 342610 CDS YP_660382.1 109897127 4173113 complement(922495..924033) 1 NC_008228.1 PFAM: D-galactarate dehydratase/Altronate hydrolase-like; KEGG: ccr:CC1488 altronate hydrolase; altronate dehydratase 924033 4173113 Patl_0800 Pseudoalteromonas atlantica T6c altronate dehydratase YP_660382.1 922495 R 342610 CDS YP_660383.1 109897128 4173114 924263..925687 1 NC_008228.1 TIGRFAM: L-fucose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: hit:NTHI0865 L-fucose permease; L-fucose transporter 925687 4173114 Patl_0801 Pseudoalteromonas atlantica T6c L-fucose transporter YP_660383.1 924263 D 342610 CDS YP_660384.1 109897129 4173115 926028..927530 1 NC_008228.1 PFAM: tryptophan halogenase; KEGG: eli:ELI_03185 tryptophan halogenase, putative; tryptophan halogenase 927530 4173115 Patl_0802 Pseudoalteromonas atlantica T6c tryptophan halogenase YP_660384.1 926028 D 342610 CDS YP_660385.1 109897130 4173116 927508..929028 1 NC_008228.1 PFAM: FAD dependent oxidoreductase tryptophan halogenase; KEGG: eli:ELI_03185 tryptophan halogenase, putative; tryptophan halogenase 929028 4173116 Patl_0803 Pseudoalteromonas atlantica T6c tryptophan halogenase YP_660385.1 927508 D 342610 CDS YP_660386.1 109897131 4173117 929370..931946 1 NC_008228.1 PFAM: glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, TIM barrel glycoside hydrolase family 2, sugar binding; KEGG: xcv:XCV4356 beta-galactosidase; glycoside hydrolase 931946 4173117 Patl_0804 Pseudoalteromonas atlantica T6c glycoside hydrolase YP_660386.1 929370 D 342610 CDS YP_660387.1 109897132 4173118 931959..932846 1 NC_008228.1 PFAM: glycoside hydrolase, family 16; KEGG: pfo:Pfl_2825 glycoside hydrolase, family 16; glycoside hydrolase 932846 4173118 Patl_0805 Pseudoalteromonas atlantica T6c glycoside hydrolase YP_660387.1 931959 D 342610 CDS YP_660388.1 109897133 4173119 complement(932953..933621) 1 NC_008228.1 hypothetical protein 933621 4173119 Patl_0806 Pseudoalteromonas atlantica T6c hypothetical protein YP_660388.1 932953 R 342610 CDS YP_660389.1 109897134 4173120 complement(933650..935149) 1 NC_008228.1 PFAM: tryptophan halogenase; KEGG: pha:PSHAa1353 tryptophan halogenase; tryptophan halogenase 935149 4173120 Patl_0807 Pseudoalteromonas atlantica T6c tryptophan halogenase YP_660389.1 933650 R 342610 CDS YP_660390.1 109897135 4173121 complement(935240..936940) 1 NC_008228.1 PFAM: Ig-like, group 2; KEGG: ctc:CTC00747 putative surface/cell-adhesion protein, multiple big2 domain; Ig-like protein 936940 4173121 Patl_0808 Pseudoalteromonas atlantica T6c Ig-like protein YP_660390.1 935240 R 342610 CDS YP_660391.1 109897136 4172306 complement(937015..940671) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_2359 TonB-dependent receptor; TonB-dependent receptor 940671 4172306 Patl_0809 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_660391.1 937015 R 342610 CDS YP_660392.1 109897137 4172307 941366..942718 1 NC_008228.1 PFAM: Carbohydrate binding family 6 glycoside hydrolase, family 43; SMART: Cellulose binding, type IV; KEGG: bth:BT1781 xylosidase/arabinosidase; carbohydrate-binding family 6 protein 942718 4172307 Patl_0810 Pseudoalteromonas atlantica T6c carbohydrate-binding family 6 protein YP_660392.1 941366 D 342610 CDS YP_660393.1 109897138 4172308 942763..943677 1 NC_008228.1 PFAM: protein of unknown function DUF1080; KEGG: ccr:CC1082 hypothetical protein; hypothetical protein 943677 4172308 Patl_0811 Pseudoalteromonas atlantica T6c hypothetical protein YP_660393.1 942763 D 342610 CDS YP_660394.1 109897139 4172309 943674..944966 1 NC_008228.1 KEGG: sco:SCO3481 hypothetical protein; hypothetical protein 944966 4172309 Patl_0812 Pseudoalteromonas atlantica T6c hypothetical protein YP_660394.1 943674 D 342610 CDS YP_660395.1 109897140 4172310 945020..945325 1 NC_008228.1 KEGG: ilo:IL1417 outer membrane protein, porin family; porin family outer membrane protein 945325 4172310 Patl_0813 Pseudoalteromonas atlantica T6c porin family outer membrane protein YP_660395.1 945020 D 342610 CDS YP_660396.1 109897141 4172311 complement(945395..946813) 1 NC_008228.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: protein of unknown function DUF1501; KEGG: rba:RB9886 hypothetical protein-putative related to sulfatases; twin-arginine translocation pathway signal protein 946813 4172311 Patl_0814 Pseudoalteromonas atlantica T6c twin-arginine translocation pathway signal protein YP_660396.1 945395 R 342610 CDS YP_660397.1 109897142 4172312 complement(946823..950047) 1 NC_008228.1 PFAM: Planctomycete cytochrome C protein of unknown function DUF1549; KEGG: rba:RB7229 hypothetical protein-signal peptide and transmembrane prediction; hypothetical protein 950047 4172312 Patl_0815 Pseudoalteromonas atlantica T6c hypothetical protein YP_660397.1 946823 R 342610 CDS YP_660398.1 109897143 4172313 complement(950056..951300) 1 NC_008228.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rba:RB9882 similar to peptidylglycine monooxygenase; twin-arginine translocation pathway signal protein 951300 4172313 Patl_0816 Pseudoalteromonas atlantica T6c twin-arginine translocation pathway signal protein YP_660398.1 950056 R 342610 CDS YP_660399.1 109897144 4172314 complement(951300..952697) 1 NC_008228.1 KEGG: rba:RB12097 hypothetical protein-signal peptide prediction; hypothetical protein 952697 4172314 Patl_0817 Pseudoalteromonas atlantica T6c hypothetical protein YP_660399.1 951300 R 342610 CDS YP_660400.1 109897145 4172315 952867..953748 1 NC_008228.1 PFAM: helix-turn-helix, AraC type; KEGG: bth:BT3667 transcriptional regulator; AraC family transcriptional regulator 953748 4172315 Patl_0818 Pseudoalteromonas atlantica T6c AraC family transcriptional regulator YP_660400.1 952867 D 342610 CDS YP_660401.1 109897146 4172316 complement(953886..955457) 1 NC_008228.1 PFAM: sulfatase; KEGG: bth:BT3333 arylsulfatase A precursor (ASA); sulfatase 955457 4172316 Patl_0819 Pseudoalteromonas atlantica T6c sulfatase YP_660401.1 953886 R 342610 CDS YP_660402.1 109897147 4172317 complement(955473..957356) 1 NC_008228.1 PFAM: sulfatase; KEGG: rba:RB198 N-acetylgalactosamine-4-sulfatase precursor; sulfatase 957356 4172317 Patl_0820 Pseudoalteromonas atlantica T6c sulfatase YP_660402.1 955473 R 342610 CDS YP_660403.1 109897148 4172318 complement(957359..960598) 1 NC_008228.1 PFAM: glycoside hydrolase, family 42, domain 5, loop region glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, TIM barrel glycoside hydrolase family 2, sugar binding; KEGG: tma:TM1193 beta-galactosidase; glycoside hydrolase 960598 4172318 Patl_0821 Pseudoalteromonas atlantica T6c glycoside hydrolase YP_660403.1 957359 R 342610 CDS YP_660404.1 109897149 4172319 960764..961120 1 NC_008228.1 KEGG: xoo:XOO0340 hypothetical protein; hypothetical protein 961120 4172319 Patl_0822 Pseudoalteromonas atlantica T6c hypothetical protein YP_660404.1 960764 D 342610 CDS YP_660405.1 109897150 4172320 961282..962886 1 NC_008228.1 PFAM: glycoside hydrolase, family 29 (alpha-L-fucosidase); KEGG: rba:RB5816 alpha-L-fucosidase; alpha-L-fucosidase 962886 4172320 Patl_0823 Pseudoalteromonas atlantica T6c alpha-L-fucosidase YP_660405.1 961282 D 342610 CDS YP_660406.1 109897151 4172321 962928..964292 1 NC_008228.1 PFAM: glycoside hydrolase, family 16; KEGG: sco:SCO3471 extracellular agarase precursor; glycoside hydrolase 964292 4172321 Patl_0824 Pseudoalteromonas atlantica T6c glycoside hydrolase YP_660406.1 962928 D 342610 CDS YP_660407.1 109897152 4172322 complement(964467..966668) 1 NC_008228.1 PFAM: glycoside hydrolase, family 3-like; KEGG: bfs:BF0758 putative glycosyl hydrolase; beta-glucosidase 966668 4172322 Patl_0825 Pseudoalteromonas atlantica T6c beta-glucosidase YP_660407.1 964467 R 342610 CDS YP_660408.1 109897153 4172323 966778..968661 1 NC_008228.1 PFAM: sulfatase Ig-like, group 2; KEGG: rba:RB5305 arylsulphatase A; sulfatase 968661 4172323 Patl_0826 Pseudoalteromonas atlantica T6c sulfatase YP_660408.1 966778 D 342610 CDS YP_660409.1 109897154 4172324 968658..969536 1 NC_008228.1 PFAM: helix-turn-helix, AraC type; KEGG: bld:BLi03167 YtdP; AraC family transcriptional regulator 969536 4172324 Patl_0827 Pseudoalteromonas atlantica T6c AraC family transcriptional regulator YP_660409.1 968658 D 342610 CDS YP_660410.1 109897155 4173969 969541..971043 1 NC_008228.1 PFAM: lipolytic enzyme, G-D-S-L; KEGG: bth:BT4096 hypothetical protein; G-D-S-L lipolytic protein 971043 4173969 Patl_0828 Pseudoalteromonas atlantica T6c G-D-S-L lipolytic protein YP_660410.1 969541 D 342610 CDS YP_660411.1 109897156 4173970 971089..972621 1 NC_008228.1 PFAM: sulfatase; KEGG: rba:RB13148 iduronate-sulfatase or arylsulfatase A; sulfatase 972621 4173970 Patl_0829 Pseudoalteromonas atlantica T6c sulfatase YP_660411.1 971089 D 342610 CDS YP_660412.1 109897157 4173971 complement(972733..974640) 1 NC_008228.1 KEGG: bth:BT3132 sialic acid-specific 9-O-acetylesterase; sialic acid-specific 9-O-acetylesterase 974640 4173971 Patl_0830 Pseudoalteromonas atlantica T6c sialic acid-specific 9-O-acetylesterase YP_660412.1 972733 R 342610 CDS YP_660413.1 109897158 4173972 complement(974691..976304) 1 NC_008228.1 PFAM: glycoside hydrolase, family 29 (alpha-L-fucosidase); KEGG: rba:RB5816 alpha-L-fucosidase; alpha-L-fucosidase 976304 4173972 Patl_0831 Pseudoalteromonas atlantica T6c alpha-L-fucosidase YP_660413.1 974691 R 342610 CDS YP_660414.1 109897159 4173973 976664..979603 1 NC_008228.1 PFAM: glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, TIM barrel glycoside hydrolase family 2, sugar binding; KEGG: bth:BT0983 beta-galactosidase; glycoside hydrolase 979603 4173973 Patl_0832 Pseudoalteromonas atlantica T6c glycoside hydrolase YP_660414.1 976664 D 342610 CDS YP_660415.1 109897160 4173974 979593..981230 1 NC_008228.1 KEGG: rba:RB13259 hypothetical protein; hypothetical protein 981230 4173974 Patl_0833 Pseudoalteromonas atlantica T6c hypothetical protein YP_660415.1 979593 D 342610 CDS YP_660416.1 109897161 4173975 981235..982713 1 NC_008228.1 PFAM: Mannitol dehydrogenase-like Mannitol dehydrogenase rossman-like; KEGG: ccr:CC1487 mannitol 2-dehydrogenase; mannitol dehydrogenase-like protein 982713 4173975 Patl_0834 Pseudoalteromonas atlantica T6c mannitol dehydrogenase-like protein YP_660416.1 981235 D 342610 CDS YP_660417.1 109897162 4173976 982726..984294 1 NC_008228.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pha:PSHAa1768 sodium/hexose cotransport protein; SSS family solute/sodium (Na+) symporter 984294 4173976 Patl_0835 Pseudoalteromonas atlantica T6c SSS family solute/sodium (Na+) symporter YP_660417.1 982726 D 342610 CDS YP_660418.1 109897163 4173977 984317..985264 1 NC_008228.1 PFAM: PfkB; KEGG: pha:PSHAa1745 ketodeoxygluconokinase; PfkB protein 985264 4173977 Patl_0836 Pseudoalteromonas atlantica T6c PfkB protein YP_660418.1 984317 D 342610 CDS YP_660419.1 109897164 4173978 985264..986187 1 NC_008228.1 KEGG: bld:BLi03370 hypothetical protein; dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein 986187 4173978 Patl_0837 Pseudoalteromonas atlantica T6c dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein YP_660419.1 985264 D 342610 CDS YP_660420.1 109897165 4173979 complement(986256..987026) 1 NC_008228.1 hypothetical protein 987026 4173979 Patl_0838 Pseudoalteromonas atlantica T6c hypothetical protein YP_660420.1 986256 R 342610 CDS YP_660421.1 109897166 4173980 987484..990435 1 NC_008228.1 PFAM: Ig-like, group 2; KEGG: rba:RB3421 probable beta-agarase [precursor]; Ig-like protein 990435 4173980 Patl_0839 Pseudoalteromonas atlantica T6c Ig-like protein YP_660421.1 987484 D 342610 CDS YP_660422.1 109897167 4173981 complement(990436..991392) 1 NC_008228.1 PFAM: transposase, IS111A/IS1328/IS1533 transposase IS116/IS110/IS902; KEGG: cps:CPS_2742 ISCps7, transposase; transposase IS116/IS110/IS902 991392 4173981 Patl_0840 Pseudoalteromonas atlantica T6c transposase IS116/IS110/IS902 YP_660422.1 990436 R 342610 CDS YP_660423.1 109897168 4173982 991595..991897 1 NC_008228.1 hypothetical protein 991897 4173982 Patl_0841 Pseudoalteromonas atlantica T6c hypothetical protein YP_660423.1 991595 D 342610 CDS YP_660424.1 109897169 4173983 complement(992448..994088) 1 NC_008228.1 PFAM: glycoside hydrolase, family 43; KEGG: bcl:ABC1148 xylosidase/arabinosidase; alpha-L-arabinofuranosidase 994088 4173983 Patl_0842 Pseudoalteromonas atlantica T6c alpha-L-arabinofuranosidase YP_660424.1 992448 R 342610 CDS YP_660425.1 109897170 4173984 complement(994210..995064) 1 NC_008228.1 PFAM: glycoside hydrolase, family 16; KEGG: rba:RB3123 probable glycosyl hydrolases-putative kappa-carrageenase precursor; glycoside hydrolase 995064 4173984 Patl_0843 Pseudoalteromonas atlantica T6c glycoside hydrolase YP_660425.1 994210 R 342610 CDS YP_660426.1 109897171 4173985 complement(995709..996758) 1 NC_008228.1 PFAM: Rieske [2Fe-2S] region; KEGG: pfl:PFL_3471 vanillate O-demethylase, oxygenase subunit; Rieske (2Fe-2S) domain-containing protein 996758 4173985 Patl_0844 Pseudoalteromonas atlantica T6c Rieske (2Fe-2S) domain-containing protein YP_660426.1 995709 R 342610 CDS YP_660427.1 109897172 4173986 997021..997716 1 NC_008228.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: ppu:PP3738 transcriptional regulator VanR, putative; GntR family transcriptional regulator 997716 4173986 Patl_0845 Pseudoalteromonas atlantica T6c GntR family transcriptional regulator YP_660427.1 997021 D 342610 CDS YP_660428.1 109897173 4173987 complement(997818..998729) 1 NC_008228.1 PFAM: regulatory protein, LysR; KEGG: ppu:PP3196 nodulation protein D1; LysR family transcriptional regulator 998729 4173987 Patl_0846 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_660428.1 997818 R 342610 CDS YP_660429.1 109897174 4173988 998845..999897 1 NC_008228.1 PFAM: amidohydrolase 2; KEGG: sco:SCO6305 hypothetical protein; aminocarboxymuconate-semialdehyde decarboxylase 999897 4173988 Patl_0847 Pseudoalteromonas atlantica T6c aminocarboxymuconate-semialdehyde decarboxylase YP_660429.1 998845 D 342610 CDS YP_660430.1 109897175 4173697 1000097..1001035 1 NC_008228.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sma:SAV565 putative 2,3-dihydroxybiphenyl-1,2-dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1001035 4173697 Patl_0848 Pseudoalteromonas atlantica T6c glyoxalase/bleomycin resistance protein/dioxygenase YP_660430.1 1000097 D 342610 CDS YP_660431.1 109897176 4173698 1001078..1002157 1 NC_008228.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sco:SCO6308 hydrolase; fumarylacetoacetate (FAA) hydrolase 1002157 4173698 Patl_0849 Pseudoalteromonas atlantica T6c fumarylacetoacetate (FAA) hydrolase YP_660431.1 1001078 D 342610 CDS YP_660432.1 109897177 4173699 1002356..1003549 1 NC_008228.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: cps:CPS_4039 putative glutathione-independent formaldehyde dehydrogenase; alcohol dehydrogenase GroES-like protein 1003549 4173699 Patl_0850 Pseudoalteromonas atlantica T6c alcohol dehydrogenase GroES-like protein YP_660432.1 1002356 D 342610 CDS YP_660433.1 109897178 4173700 complement(1003648..1004598) 1 NC_008228.1 PFAM: helix-turn-helix, AraC type; KEGG: mlo:mlr1331 probable transcriptional regulator; AraC family transcriptional regulator 1004598 4173700 Patl_0851 Pseudoalteromonas atlantica T6c AraC family transcriptional regulator YP_660433.1 1003648 R 342610 CDS YP_660434.1 109897179 4173701 1004702..1005769 1 NC_008228.1 PFAM: Rieske [2Fe-2S] region; KEGG: sco:SCO6680 oxidoreductase alpha subunit; Rieske (2Fe-2S) domain-containing protein 1005769 4173701 Patl_0852 Pseudoalteromonas atlantica T6c Rieske (2Fe-2S) domain-containing protein YP_660434.1 1004702 D 342610 CDS YP_660435.1 109897180 4173702 complement(1005941..1006849) 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ppu:PP3196 nodulation protein D1; LysR family transcriptional regulator 1006849 4173702 Patl_0853 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_660435.1 1005941 R 342610 CDS YP_660436.1 109897181 4173703 1007033..1008028 1 NC_008228.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ppu:PP3205 fumarylacetoacetate hydrolase family protein; fumarylacetoacetate (FAA) hydrolase 1008028 4173703 Patl_0854 Pseudoalteromonas atlantica T6c fumarylacetoacetate (FAA) hydrolase YP_660436.1 1007033 D 342610 CDS YP_660437.1 109897182 4173704 1008028..1008816 1 NC_008228.1 PFAM: putative cyclase; KEGG: ppu:PP3207 cyclase, putative; putative cyclase 1008816 4173704 Patl_0855 Pseudoalteromonas atlantica T6c putative cyclase YP_660437.1 1008028 D 342610 CDS YP_660438.1 109897183 4173705 1008873..1010033 1 NC_008228.1 KEGG: ppu:PP3195 hypothetical protein; hypothetical protein 1010033 4173705 Patl_0856 Pseudoalteromonas atlantica T6c hypothetical protein YP_660438.1 1008873 D 342610 CDS YP_660439.1 109897184 4173706 1010044..1010976 1 NC_008228.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:bll6427 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 1010976 4173706 Patl_0857 Pseudoalteromonas atlantica T6c glyoxalase/bleomycin resistance protein/dioxygenase YP_660439.1 1010044 D 342610 CDS YP_660440.1 109897185 4173707 1010982..1011344 1 NC_008228.1 PFAM: Rieske [2Fe-2S] region; KEGG: bja:bll6426 hypothetical protein; Rieske (2Fe-2S) domain-containing protein 1011344 4173707 Patl_0858 Pseudoalteromonas atlantica T6c Rieske (2Fe-2S) domain-containing protein YP_660440.1 1010982 D 342610 CDS YP_660441.1 109897186 4173708 1011341..1012471 1 NC_008228.1 PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: bja:bll6425 hypothetical protein; hypothetical protein 1012471 4173708 Patl_0859 Pseudoalteromonas atlantica T6c hypothetical protein YP_660441.1 1011341 D 342610 CDS YP_660442.1 109897187 4173709 1013094..1013471 1 NC_008228.1 hypothetical protein 1013471 4173709 Patl_0860 Pseudoalteromonas atlantica T6c hypothetical protein YP_660442.1 1013094 D 342610 CDS YP_660443.1 109897188 4173710 1013568..1014245 1 NC_008228.1 hypothetical protein 1014245 4173710 Patl_0861 Pseudoalteromonas atlantica T6c hypothetical protein YP_660443.1 1013568 D 342610 CDS YP_660444.1 109897189 4173711 complement(1014279..1015235) 1 NC_008228.1 PFAM: transposase, IS111A/IS1328/IS1533 transposase IS116/IS110/IS902; KEGG: cps:CPS_2742 ISCps7, transposase; transposase IS116/IS110/IS902 1015235 4173711 Patl_0862 Pseudoalteromonas atlantica T6c transposase IS116/IS110/IS902 YP_660444.1 1014279 R 342610 CDS YP_660445.1 109897190 4173712 complement(1015563..1016771) 1 NC_008228.1 PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase; transposase, IS4 1016771 4173712 Patl_0863 Pseudoalteromonas atlantica T6c transposase, IS4 YP_660445.1 1015563 R 342610 CDS YP_660446.1 109897191 4173713 1016894..1017466 1 NC_008228.1 hypothetical protein 1017466 4173713 Patl_0864 Pseudoalteromonas atlantica T6c hypothetical protein YP_660446.1 1016894 D 342610 CDS YP_660447.1 109897192 4173714 1018873..1021362 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_2088 TonB-dependent receptor; TonB-dependent receptor 1021362 4173714 Patl_0865 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_660447.1 1018873 D 342610 CDS YP_660448.1 109897193 4173715 complement(1021929..1022828) 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ppu:PP3196 nodulation protein D1; LysR family transcriptional regulator 1022828 4173715 Patl_0866 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_660448.1 1021929 R 342610 CDS YP_660449.1 109897194 4171996 1023142..1024215 1 NC_008228.1 PFAM: Rieske [2Fe-2S] region; KEGG: rpb:RPB_1908 Rieske (2Fe-2S) protein; Rieske (2Fe-2S) domain-containing protein 1024215 4171996 Patl_0867 Pseudoalteromonas atlantica T6c Rieske (2Fe-2S) domain-containing protein YP_660449.1 1023142 D 342610 CDS YP_660450.1 109897195 4171997 1024367..1024777 1 NC_008228.1 PFAM: DoxX; KEGG: ret:RHE_CH02231 hypothetical conserved membrane protein; DoxX protein 1024777 4171997 Patl_0868 Pseudoalteromonas atlantica T6c DoxX protein YP_660450.1 1024367 D 342610 CDS YP_660451.1 109897196 4171998 1024823..1025779 1 NC_008228.1 PFAM: ferredoxin oxidoreductase FAD/NAD(P)-binding Oxidoreductase FAD-binding region; KEGG: pfl:PFL_3472 vanillate O-demethylase oxidoreductase; ferredoxin 1025779 4171998 Patl_0869 Pseudoalteromonas atlantica T6c ferredoxin YP_660451.1 1024823 D 342610 CDS YP_660452.1 109897197 4171999 1025986..1027590 1 NC_008228.1 PFAM: sulfatase; KEGG: pfo:Pfl_0208 sulfatase; sulfatase 1027590 4171999 Patl_0870 Pseudoalteromonas atlantica T6c sulfatase YP_660452.1 1025986 D 342610 CDS YP_660453.1 109897198 4172000 complement(1028189..1028932) 1 NC_008228.1 PFAM: Siderophore-interacting protein FAD-binding 9, siderophore-interacting; KEGG: rba:RB11489 vulnibactin utilization protein VIUB; siderophore-interacting protein 1028932 4172000 Patl_0871 Pseudoalteromonas atlantica T6c siderophore-interacting protein YP_660453.1 1028189 R 342610 CDS YP_660454.1 109897199 4172001 complement(1028959..1029636) 1 NC_008228.1 PFAM: glutathione S-transferase-like; KEGG: atc:AGR_C_1527 glutathione S-transferase; glutathione S-transferase-like protein 1029636 4172001 Patl_0872 Pseudoalteromonas atlantica T6c glutathione S-transferase-like protein YP_660454.1 1028959 R 342610 CDS YP_660455.1 109897200 4172003 1030393..1031952 1 NC_008228.1 PFAM: Carboxylesterase, type B; KEGG: tfu:Tfu_2427 putative carboxylesterase; carboxylesterase 1031952 4172003 Patl_0874 Pseudoalteromonas atlantica T6c carboxylesterase YP_660455.1 1030393 D 342610 CDS YP_660456.1 109897201 4172004 complement(1032121..1033332) 1 NC_008228.1 PFAM: major facilitator superfamily MFS_1; KEGG: ppu:PP3203 major facilitator family transporter; major facilitator superfamily transporter 1033332 4172004 Patl_0875 Pseudoalteromonas atlantica T6c major facilitator superfamily transporter YP_660456.1 1032121 R 342610 CDS YP_660457.1 109897202 4172005 1033828..1034814 1 NC_008228.1 PFAM: beta-lactamase-like; KEGG: xac:XAC2994 hydrolase; beta-lactamase-like protein 1034814 4172005 Patl_0876 Pseudoalteromonas atlantica T6c beta-lactamase-like protein YP_660457.1 1033828 D 342610 CDS YP_660458.1 109897203 4172007 1036136..1036765 1 NC_008228.1 hypothetical protein 1036765 4172007 Patl_0878 Pseudoalteromonas atlantica T6c hypothetical protein YP_660458.1 1036136 D 342610 CDS YP_660459.1 109897204 4172008 1036849..1039473 1 NC_008228.1 hypothetical protein 1039473 4172008 Patl_0879 Pseudoalteromonas atlantica T6c hypothetical protein YP_660459.1 1036849 D 342610 CDS YP_660460.1 109897205 4172009 1039675..1040676 1 NC_008228.1 PFAM: glycoside hydrolase, family 16; KEGG: rba:RB3123 probable glycosyl hydrolases-putative kappa-carrageenase precursor; glycoside hydrolase 1040676 4172009 Patl_0880 Pseudoalteromonas atlantica T6c glycoside hydrolase YP_660460.1 1039675 D 342610 CDS YP_660461.1 109897206 4172010 1040699..1042231 1 NC_008228.1 PFAM: sulfatase; KEGG: rba:RB6765 N-acetylgalactosamine 6-sulfate sulfatase (GALNS); sulfatase 1042231 4172010 Patl_0881 Pseudoalteromonas atlantica T6c sulfatase YP_660461.1 1040699 D 342610 CDS YP_660462.1 109897207 4172011 1042701..1043162 1 NC_008228.1 KEGG: pha:PSHAb0050 hypothetical protein; hypothetical protein 1043162 4172011 Patl_0882 Pseudoalteromonas atlantica T6c hypothetical protein YP_660462.1 1042701 D 342610 CDS YP_660463.1 109897208 4172012 1043467..1043730 1 NC_008228.1 KEGG: bld:BLi02834 YrhK; hypothetical protein 1043730 4172012 Patl_0883 Pseudoalteromonas atlantica T6c hypothetical protein YP_660463.1 1043467 D 342610 CDS YP_660464.1 109897209 4172013 complement(1043860..1044639) 1 NC_008228.1 PFAM: protein of unknown function DUF1080; KEGG: ccr:CC1633 hypothetical protein; hypothetical protein 1044639 4172013 Patl_0884 Pseudoalteromonas atlantica T6c hypothetical protein YP_660464.1 1043860 R 342610 CDS YP_660465.1 109897210 4172014 complement(1044832..1047258) 1 NC_008228.1 hypothetical protein 1047258 4172014 Patl_0885 Pseudoalteromonas atlantica T6c hypothetical protein YP_660465.1 1044832 R 342610 CDS YP_660466.1 109897211 4172015 complement(1047358..1049106) 1 NC_008228.1 PFAM: Ig-like, group 2; KEGG: cac:CAC3086 protein containing cell adhesion domain; Ig-like protein 1049106 4172015 Patl_0886 Pseudoalteromonas atlantica T6c Ig-like protein YP_660466.1 1047358 R 342610 CDS YP_660467.1 109897212 4172933 complement(1049213..1052923) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_2359 TonB-dependent receptor; TonB-dependent receptor 1052923 4172933 Patl_0887 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_660467.1 1049213 R 342610 CDS YP_660468.1 109897213 4172934 1054099..1055652 1 NC_008228.1 PFAM: sulfatase; KEGG: sco:SCO7547 sulfatase; sulfatase 1055652 4172934 Patl_0888 Pseudoalteromonas atlantica T6c sulfatase YP_660468.1 1054099 D 342610 CDS YP_660469.1 109897214 4172935 1055728..1057230 1 NC_008228.1 PFAM: sulfatase; KEGG: rba:RB348 arylsulfatase B; sulfatase 1057230 4172935 Patl_0889 Pseudoalteromonas atlantica T6c sulfatase YP_660469.1 1055728 D 342610 CDS YP_660470.1 109897215 4172936 1057378..1059318 1 NC_008228.1 KEGG: rba:RB11088 similar to ASPIC; hypothetical protein 1059318 4172936 Patl_0890 Pseudoalteromonas atlantica T6c hypothetical protein YP_660470.1 1057378 D 342610 CDS YP_660471.1 109897216 4172937 1059484..1061181 1 NC_008228.1 PFAM: sulfatase; KEGG: rba:RB5424 iduronate-2-sulfatase; sulfatase 1061181 4172937 Patl_0891 Pseudoalteromonas atlantica T6c sulfatase YP_660471.1 1059484 D 342610 CDS YP_660472.1 109897217 4172938 1061178..1063103 1 NC_008228.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like; KEGG: bth:BT2458 putative pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein-like protein 1063103 4172938 Patl_0892 Pseudoalteromonas atlantica T6c fumarate reductase/succinate dehydrogenase flavoprotein-like protein YP_660472.1 1061178 D 342610 CDS YP_660473.1 109897218 4172939 1063103..1064368 1 NC_008228.1 hypothetical protein 1064368 4172939 Patl_0893 Pseudoalteromonas atlantica T6c hypothetical protein YP_660473.1 1063103 D 342610 CDS YP_660474.1 109897219 4172940 1064775..1065536 1 NC_008228.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mlo:mll7194 transcriptional regulator; GntR family transcriptional regulator 1065536 4172940 Patl_0894 Pseudoalteromonas atlantica T6c GntR family transcriptional regulator YP_660474.1 1064775 D 342610 CDS YP_660475.1 109897220 4172941 1065590..1067005 1 NC_008228.1 PFAM: sulfatase; KEGG: rba:RB348 arylsulfatase B; sulfatase 1067005 4172941 Patl_0895 Pseudoalteromonas atlantica T6c sulfatase YP_660475.1 1065590 D 342610 CDS YP_660476.1 109897221 4172942 1067420..1068862 1 NC_008228.1 PFAM: aldehyde dehydrogenase; KEGG: lmf:LMOf2365_0935 succinate-semialdehyde dehydrogenase; aldehyde dehydrogenase 1068862 4172942 Patl_0896 Pseudoalteromonas atlantica T6c aldehyde dehydrogenase YP_660476.1 1067420 D 342610 CDS YP_660477.1 109897222 4172943 1068862..1070025 1 NC_008228.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: sil:SPO2414 mandelate racemase/muconate lactonizing enzyme family protein; mandelate racemase/muconate lactonizing-like protein 1070025 4172943 Patl_0897 Pseudoalteromonas atlantica T6c mandelate racemase/muconate lactonizing-like protein YP_660477.1 1068862 D 342610 CDS YP_660478.1 109897223 4172944 1070031..1071092 1 NC_008228.1 PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: xcv:XCV1794 putative 2-oxo-3-deoxygalactonate kinase; 2-keto-3-deoxy-galactonokinase 1071092 4172944 Patl_0898 Pseudoalteromonas atlantica T6c 2-keto-3-deoxy-galactonokinase YP_660478.1 1070031 D 342610 CDS YP_660479.1 109897224 4172945 1071159..1071809 1 NC_008228.1 PFAM: KDPG and KHG aldolase; KEGG: pfo:Pfl_4124 KDPG and KHG aldolase; KDPG and KHG aldolase 1071809 4172945 Patl_0899 Pseudoalteromonas atlantica T6c KDPG and KHG aldolase YP_660479.1 1071159 D 342610 CDS YP_660480.1 109897225 4172946 1071940..1073496 1 NC_008228.1 TIGRFAM: sugar transporter; PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: bth:BT0436 arabinose-proton symporter; sugar transporter 1073496 4172946 Patl_0900 Pseudoalteromonas atlantica T6c sugar transporter YP_660480.1 1071940 D 342610 CDS YP_660481.1 109897226 4172947 1073655..1074395 1 NC_008228.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mlo:mll7194 transcriptional regulator; GntR family transcriptional regulator 1074395 4172947 Patl_0901 Pseudoalteromonas atlantica T6c GntR family transcriptional regulator YP_660481.1 1073655 D 342610 CDS YP_660482.1 109897227 4172948 complement(1074669..1075148) 1 NC_008228.1 hypothetical protein 1075148 4172948 Patl_0902 Pseudoalteromonas atlantica T6c hypothetical protein YP_660482.1 1074669 R 342610 CDS YP_660483.1 109897228 4172949 complement(1075469..1075723) 1 NC_008228.1 KEGG: ppr:PBPRB1708 hypothetical transposase of Tn10; hypothetical protein 1075723 4172949 Patl_0903 Pseudoalteromonas atlantica T6c hypothetical protein YP_660483.1 1075469 R 342610 CDS YP_660484.1 109897229 4172950 complement(1075739..1075894) 1 NC_008228.1 hypothetical protein 1075894 4172950 Patl_0904 Pseudoalteromonas atlantica T6c hypothetical protein YP_660484.1 1075739 R 342610 CDS YP_660485.1 109897230 4172951 1076060..1076413 1 NC_008228.1 PFAM: regulatory protein, MerR; KEGG: hch:HCH_03406 predicted transcriptional regulator; MerR family transcriptional regulator 1076413 4172951 Patl_0905 Pseudoalteromonas atlantica T6c MerR family transcriptional regulator YP_660485.1 1076060 D 342610 CDS YP_660486.1 109897231 4171960 1076474..1077295 1 NC_008228.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ava:Ava_1011 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1077295 4171960 Patl_0906 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_660486.1 1076474 D 342610 CDS YP_660487.1 109897232 4171961 1077475..1078458 1 NC_008228.1 PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAa2057 hypothetical protein; hypothetical protein 1078458 4171961 Patl_0907 Pseudoalteromonas atlantica T6c hypothetical protein YP_660487.1 1077475 D 342610 CDS YP_660488.1 109897233 4171962 complement(1078807..1079130) 1 NC_008228.1 KEGG: vvy:VV1797 hypothetical protein; hypothetical protein 1079130 4171962 Patl_0908 Pseudoalteromonas atlantica T6c hypothetical protein YP_660488.1 1078807 R 342610 CDS YP_660489.1 109897234 4171963 complement(1079279..1079692) 1 NC_008228.1 hypothetical protein 1079692 4171963 Patl_0909 Pseudoalteromonas atlantica T6c hypothetical protein YP_660489.1 1079279 R 342610 CDS YP_660490.1 109897235 4171964 1080397..1082394 1 NC_008228.1 PFAM: protein of unknown function DUF1680; KEGG: rba:RB5313 conserved hypothetical protein-putative ATP binding protein; hypothetical protein 1082394 4171964 Patl_0910 Pseudoalteromonas atlantica T6c hypothetical protein YP_660490.1 1080397 D 342610 CDS YP_660491.1 109897236 4171965 1082683..1084677 1 NC_008228.1 KEGG: bba:Bd0328 rhs family protein; hypothetical protein 1084677 4171965 Patl_0911 Pseudoalteromonas atlantica T6c hypothetical protein YP_660491.1 1082683 D 342610 CDS YP_660492.1 109897237 4171966 complement(1084924..1085823) 1 NC_008228.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xac:XAC1178 oxidoreductase; short-chain dehydrogenase/reductase SDR 1085823 4171966 Patl_0912 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_660492.1 1084924 R 342610 CDS YP_660493.1 109897238 4171967 1086933..1087784 1 NC_008228.1 hypothetical protein 1087784 4171967 Patl_0913 Pseudoalteromonas atlantica T6c hypothetical protein YP_660493.1 1086933 D 342610 CDS YP_660494.1 109897239 4171968 complement(1087832..1088350) 1 NC_008228.1 KEGG: eli:ELI_09215 hypothetical protein; hypothetical protein 1088350 4171968 Patl_0914 Pseudoalteromonas atlantica T6c hypothetical protein YP_660494.1 1087832 R 342610 CDS YP_660495.1 109897240 4171969 complement(1088420..1089460) 1 NC_008228.1 PFAM: protein of unknown function UPF0118; KEGG: xcb:XC_0080 hypothetical protein; hypothetical protein 1089460 4171969 Patl_0915 Pseudoalteromonas atlantica T6c hypothetical protein YP_660495.1 1088420 R 342610 CDS YP_660496.1 109897241 4171970 1090177..1090674 1 NC_008228.1 KEGG: bba:Bd0894 hypothetical protein; hypothetical protein 1090674 4171970 Patl_0916 Pseudoalteromonas atlantica T6c hypothetical protein YP_660496.1 1090177 D 342610 CDS YP_660497.1 109897242 4171971 1091362..1092030 1 NC_008228.1 KEGG: rpb:RPB_1618 hypothetical protein; hypothetical protein 1092030 4171971 Patl_0917 Pseudoalteromonas atlantica T6c hypothetical protein YP_660497.1 1091362 D 342610 CDS YP_660498.1 109897243 4171972 1092023..1092604 1 NC_008228.1 KEGG: rru:Rru_A3045 hypothetical protein; hypothetical protein 1092604 4171972 Patl_0918 Pseudoalteromonas atlantica T6c hypothetical protein YP_660498.1 1092023 D 342610 CDS YP_660499.1 109897244 4171973 1092671..1093237 1 NC_008228.1 KEGG: nmu:Nmul_A2305 hypothetical protein; hypothetical protein 1093237 4171973 Patl_0919 Pseudoalteromonas atlantica T6c hypothetical protein YP_660499.1 1092671 D 342610 CDS YP_660500.1 109897245 4171974 1094567..1095544 1 NC_008228.1 KEGG: vpa:VP1992 hypothetical protein; hypothetical protein 1095544 4171974 Patl_0920 Pseudoalteromonas atlantica T6c hypothetical protein YP_660500.1 1094567 D 342610 CDS YP_660501.1 109897246 4171975 1095674..1096702 1 NC_008228.1 catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 1096702 4171975 Patl_0921 Pseudoalteromonas atlantica T6c 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_660501.1 1095674 D 342610 CDS YP_660502.1 109897247 4171976 complement(1096774..1097733) 1 NC_008228.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: ccr:CC1570 hypothetical protein; 2-nitropropane dioxygenase 1097733 4171976 Patl_0922 Pseudoalteromonas atlantica T6c 2-nitropropane dioxygenase YP_660502.1 1096774 R 342610 CDS YP_660503.1 109897248 4171977 1098092..1098868 1 NC_008228.1 KEGG: pae:PA2095 hypothetical protein; hypothetical protein 1098868 4171977 Patl_0923 Pseudoalteromonas atlantica T6c hypothetical protein YP_660503.1 1098092 D 342610 CDS YP_660504.1 109897249 4171978 1099213..1100481 1 NC_008228.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: fnu:FN1280 endonuclease; DNA/RNA non-specific endonuclease 1100481 4171978 Patl_0924 Pseudoalteromonas atlantica T6c DNA/RNA non-specific endonuclease YP_660504.1 1099213 D 342610 CDS YP_660505.1 109897250 4171979 1100914..1101645 1 NC_008228.1 TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC Septum formation inhibitor MinC-like; KEGG: pst:PSPTO3872 septum site-determining protein MinC; septum site-determining protein MinC 1101645 4171979 Patl_0925 Pseudoalteromonas atlantica T6c septum site-determining protein MinC YP_660505.1 1100914 D 342610 CDS YP_660506.1 109897251 4172133 1101746..1102555 1 NC_008228.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pae:PA3244 cell division inhibitor MinD; septum site-determining protein MinD 1102555 4172133 Patl_0926 Pseudoalteromonas atlantica T6c septum site-determining protein MinD YP_660506.1 1101746 D 342610 CDS YP_660507.1 109897252 4172134 1102555..1102806 1 NC_008228.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1102806 minE 4172134 minE Pseudoalteromonas atlantica T6c cell division topological specificity factor MinE YP_660507.1 1102555 D 342610 CDS YP_660508.1 109897253 4172135 complement(1102963..1103400) 1 NC_008228.1 PFAM: GCN5-related N-acetyltransferase; KEGG: plu:plu3536 unnamed protein product; some similarities with spermidine acetyltransferase; N-acetyltransferase GCN5 1103400 4172135 Patl_0928 Pseudoalteromonas atlantica T6c N-acetyltransferase GCN5 YP_660508.1 1102963 R 342610 CDS YP_660509.1 109897254 4172136 complement(1103486..1104340) 1 NC_008228.1 PFAM: protein of unknown function DUF980; KEGG: cps:CPS_2687 hypothetical protein; hypothetical protein 1104340 4172136 Patl_0929 Pseudoalteromonas atlantica T6c hypothetical protein YP_660509.1 1103486 R 342610 CDS YP_660510.1 109897255 4172137 1104718..1106361 1 NC_008228.1 PFAM: peptidase S15 X-Pro dipeptidyl-peptidase-like; KEGG: lmo:lmo2755 similar to acylase and diesterase; X-Pro dipeptidyl-peptidase-like protein 1106361 4172137 Patl_0930 Pseudoalteromonas atlantica T6c X-Pro dipeptidyl-peptidase-like protein YP_660510.1 1104718 D 342610 CDS YP_660511.1 109897256 4172138 complement(1106804..1108303) 1 NC_008228.1 KEGG: gvi:glr1347 hypothetical protein; hypothetical protein 1108303 4172138 Patl_0931 Pseudoalteromonas atlantica T6c hypothetical protein YP_660511.1 1106804 R 342610 CDS YP_660512.1 109897257 4172139 complement(1108477..1110999) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2973 secreted TonB-dependent receptor; TonB-dependent receptor, plug 1110999 4172139 Patl_0932 Pseudoalteromonas atlantica T6c TonB-dependent receptor, plug YP_660512.1 1108477 R 342610 CDS YP_660513.1 109897258 4172140 complement(1111842..1113746) 1 NC_008228.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ppr:PBPRB0504 hypothetical permease; TRAP transporter, 4TM/12TM fusion protein 1113746 4172140 Patl_0933 Pseudoalteromonas atlantica T6c TRAP transporter, 4TM/12TM fusion protein YP_660513.1 1111842 R 342610 CDS YP_660514.1 109897259 4172141 complement(1113913..1114839) 1 NC_008228.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: ppr:PBPRB0505 hypothetical immunogenic protein; TRAP transporter solute receptor TAXI family protein 1114839 4172141 Patl_0934 Pseudoalteromonas atlantica T6c TRAP transporter solute receptor TAXI family protein YP_660514.1 1113913 R 342610 CDS YP_660515.1 109897260 4172142 complement(1115027..1117912) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2973 secreted TonB-dependent receptor; TonB-dependent receptor, plug 1117912 4172142 Patl_0935 Pseudoalteromonas atlantica T6c TonB-dependent receptor, plug YP_660515.1 1115027 R 342610 CDS YP_660516.1 109897261 4172143 complement(1118029..1119081) 1 NC_008228.1 PFAM: FecR protein; KEGG: cps:CPS_0244 putative regulatory protein; putative FecR protein 1119081 4172143 Patl_0936 Pseudoalteromonas atlantica T6c putative FecR protein YP_660516.1 1118029 R 342610 CDS YP_660517.1 109897262 4172144 complement(1119084..1119704) 1 NC_008228.1 PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: cps:CPS_0243 putative RNA polymerase sigma-70 factor FecI; ECF subfamily RNA polymerase sigma-24 factor 1119704 4172144 Patl_0937 Pseudoalteromonas atlantica T6c ECF subfamily RNA polymerase sigma-24 factor YP_660517.1 1119084 R 342610 CDS YP_660518.1 109897263 4172145 complement(1120076..1120600) 1 NC_008228.1 KEGG: cps:CPS_0903 hypothetical protein; hypothetical protein 1120600 4172145 Patl_0938 Pseudoalteromonas atlantica T6c hypothetical protein YP_660518.1 1120076 R 342610 CDS YP_660519.1 109897264 4172146 complement(1120789..1123080) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC3461 TonB-dependent receptor; TonB-dependent receptor 1123080 4172146 Patl_0939 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_660519.1 1120789 R 342610 CDS YP_660520.1 109897265 4172147 1123645..1125987 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC3436 TonB-dependent receptor; TonB-dependent receptor 1125987 4172147 Patl_0940 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_660520.1 1123645 D 342610 CDS YP_660521.1 109897266 4172148 1125993..1127231 1 NC_008228.1 PFAM: peptidase M19, renal dipeptidase; KEGG: ccr:CC2746 dipeptidase; peptidase M19 1127231 4172148 Patl_0941 Pseudoalteromonas atlantica T6c peptidase M19 YP_660521.1 1125993 D 342610 CDS YP_660522.1 109897267 4172149 complement(1127325..1127867) 1 NC_008228.1 KEGG: pha:PSHAb0144 conserved protein of unknown function ; putative secreted protein; hypothetical protein 1127867 4172149 Patl_0942 Pseudoalteromonas atlantica T6c hypothetical protein YP_660522.1 1127325 R 342610 CDS YP_660523.1 109897268 4172150 1128196..1128711 1 NC_008228.1 KEGG: hch:HCH_01288 hypothetical protein; hypothetical protein 1128711 4172150 Patl_0943 Pseudoalteromonas atlantica T6c hypothetical protein YP_660523.1 1128196 D 342610 CDS YP_660524.1 109897269 4172151 complement(1128966..1129367) 1 NC_008228.1 SMART: Rhodanese-like; KEGG: ilo:IL1695 rhodanese-related sulfurtransferase; rhodanese-like protein 1129367 4172151 Patl_0944 Pseudoalteromonas atlantica T6c rhodanese-like protein YP_660524.1 1128966 R 342610 CDS YP_660525.1 109897270 4173122 complement(1129375..1130169) 1 NC_008228.1 PFAM: protein of unknown function DUF81; KEGG: cef:CE0317 hypothetical protein; hypothetical protein 1130169 4173122 Patl_0945 Pseudoalteromonas atlantica T6c hypothetical protein YP_660525.1 1129375 R 342610 CDS YP_660526.1 109897271 4173123 1130247..1131113 1 NC_008228.1 PFAM: beta-lactamase-like; KEGG: cvi:CV0042 hypothetical protein; beta-lactamase-like protein 1131113 4173123 Patl_0946 Pseudoalteromonas atlantica T6c beta-lactamase-like protein YP_660526.1 1130247 D 342610 CDS YP_660527.1 109897272 4173124 complement(1131124..1132743) 1 NC_008228.1 PFAM: response regulator receiver; KEGG: pha:PSHAa1088 TPR motives; response regulator receiver protein 1132743 4173124 Patl_0947 Pseudoalteromonas atlantica T6c response regulator receiver protein YP_660527.1 1131124 R 342610 CDS YP_660528.1 109897273 4173125 1133011..1134501 1 NC_008228.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: son:SO1678 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 1134501 4173125 Patl_0948 Pseudoalteromonas atlantica T6c methylmalonate-semialdehyde dehydrogenase YP_660528.1 1133011 D 342610 CDS YP_660529.1 109897274 4173126 1134513..1135670 1 NC_008228.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: pha:PSHAa1456 acyl-CoA dehydrogenase protein; acyl-CoA dehydrogenase-like protein 1135670 4173126 Patl_0949 Pseudoalteromonas atlantica T6c acyl-CoA dehydrogenase-like protein YP_660529.1 1134513 D 342610 CDS YP_660530.1 109897275 4173127 1135764..1136894 1 NC_008228.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: cps:CPS_1607 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase 1136894 4173127 Patl_0950 Pseudoalteromonas atlantica T6c enoyl-CoA hydratase/isomerase YP_660530.1 1135764 D 342610 CDS YP_660531.1 109897276 4173128 1136897..1137817 1 NC_008228.1 KEGG: son:SO1682 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase 1137817 4173128 Patl_0951 Pseudoalteromonas atlantica T6c 3-hydroxyisobutyrate dehydrogenase YP_660531.1 1136897 D 342610 CDS YP_660532.1 109897277 4173129 1137877..1138638 1 NC_008228.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1138638 fabG 4173129 fabG Pseudoalteromonas atlantica T6c 3-ketoacyl-ACP reductase YP_660532.1 1137877 D 342610 CDS YP_660533.1 109897278 4173130 1138987..1140543 1 NC_008228.1 KEGG: sth:STH1184 hypothetical protein, aspartate-rich; hypothetical protein 1140543 4173130 Patl_0953 Pseudoalteromonas atlantica T6c hypothetical protein YP_660533.1 1138987 D 342610 CDS YP_660534.1 109897279 4173131 1140679..1141278 1 NC_008228.1 PFAM: Peptidoglycan-binding domain 1; peptidoglycan binding domain-containing protein 1141278 4173131 Patl_0954 Pseudoalteromonas atlantica T6c peptidoglycan binding domain-containing protein YP_660534.1 1140679 D 342610 CDS YP_660535.1 109897280 4173132 complement(1141279..1141542) 1 NC_008228.1 hypothetical protein 1141542 4173132 Patl_0955 Pseudoalteromonas atlantica T6c hypothetical protein YP_660535.1 1141279 R 342610 CDS YP_660536.1 109897281 4173133 complement(1141864..1142643) 1 NC_008228.1 PFAM: glutamine amidotransferase, class-II; KEGG: eca:ECA3472 hypothetical protein; glutamine amidotransferase, class-II 1142643 4173133 Patl_0956 Pseudoalteromonas atlantica T6c glutamine amidotransferase, class-II YP_660536.1 1141864 R 342610 CDS YP_660537.1 109897282 4173134 1142778..1143269 1 NC_008228.1 hypothetical protein 1143269 4173134 Patl_0957 Pseudoalteromonas atlantica T6c hypothetical protein YP_660537.1 1142778 D 342610 CDS YP_660538.1 109897283 4173135 1143550..1145889 1 NC_008228.1 KEGG: cps:CPS_0806 hypothetical protein; hypothetical protein 1145889 4173135 Patl_0958 Pseudoalteromonas atlantica T6c hypothetical protein YP_660538.1 1143550 D 342610 CDS YP_660539.1 109897284 4173136 1145889..1146761 1 NC_008228.1 KEGG: cps:CPS_0806 hypothetical protein; hypothetical protein 1146761 4173136 Patl_0959 Pseudoalteromonas atlantica T6c hypothetical protein YP_660539.1 1145889 D 342610 CDS YP_660540.1 109897285 4173137 1146762..1148213 1 NC_008228.1 KEGG: cps:CPS_0807 hypothetical protein; hypothetical protein 1148213 4173137 Patl_0960 Pseudoalteromonas atlantica T6c hypothetical protein YP_660540.1 1146762 D 342610 CDS YP_660541.1 109897286 4173138 complement(1148224..1150959) 1 NC_008228.1 PFAM: protein of unknown function RIO1 protein kinase TPR repeat Tetratricopeptide TPR_2; SMART: Tyrosine protein kinase Serine/threonine protein kinase Tetratricopeptide region; KEGG: gvi:glr1096 serine/threonine protein kinase; serine/threonin protein kinase 1150959 4173138 Patl_0961 Pseudoalteromonas atlantica T6c serine/threonin protein kinase YP_660541.1 1148224 R 342610 CDS YP_660542.1 109897287 4173139 1151071..1151646 1 NC_008228.1 PFAM: sigma factor, ECF-like; KEGG: hch:HCH_04888 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein; ECF subfamily RNA polymerase sigma-24 factor 1151646 4173139 Patl_0962 Pseudoalteromonas atlantica T6c ECF subfamily RNA polymerase sigma-24 factor YP_660542.1 1151071 D 342610 CDS YP_660543.1 109897288 4173140 complement(1151732..1152067) 1 NC_008228.1 hypothetical protein 1152067 4173140 Patl_0963 Pseudoalteromonas atlantica T6c hypothetical protein YP_660543.1 1151732 R 342610 CDS YP_660544.1 109897289 4173141 1152458..1153468 1 NC_008228.1 PFAM: Rhodanese-like; KEGG: vpa:VPA1597 hypothetical protein; hypothetical protein 1153468 4173141 Patl_0964 Pseudoalteromonas atlantica T6c hypothetical protein YP_660544.1 1152458 D 342610 CDS YP_660545.1 109897290 4173814 1153561..1153809 1 NC_008228.1 PFAM: Calcium-binding EF-hand; KEGG: ath:At2g17890 calcium-dependent protein kinase family protein / CDPK family protein; signal transduction protein 1153809 4173814 Patl_0965 Pseudoalteromonas atlantica T6c signal transduction protein YP_660545.1 1153561 D 342610 CDS YP_660546.1 109897291 4173815 complement(1153897..1155081) 1 NC_008228.1 PFAM: Saccharopine dehydrogenase; KEGG: nwi:Nwi_1410 saccharopine dehydrogenase; saccharopine dehydrogenase 1155081 4173815 Patl_0966 Pseudoalteromonas atlantica T6c saccharopine dehydrogenase YP_660546.1 1153897 R 342610 CDS YP_660547.1 109897292 4173816 complement(1155298..1157907) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa0840 TonB-dependent receptor; TonB-dependent receptor 1157907 4173816 Patl_0967 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_660547.1 1155298 R 342610 CDS YP_660548.1 109897293 4173817 complement(1158364..1159827) 1 NC_008228.1 PFAM: pyruvate kinase; KEGG: son:SO2491 pyruvate kinase II; pyruvate kinase 1159827 4173817 Patl_0968 Pseudoalteromonas atlantica T6c pyruvate kinase YP_660548.1 1158364 R 342610 CDS YP_660549.1 109897294 4173818 complement(1160140..1160994) 1 NC_008228.1 Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 1160994 4173818 Patl_0969 Pseudoalteromonas atlantica T6c DNA-binding transcriptional regulator HexR YP_660549.1 1160140 R 342610 CDS YP_660550.1 109897295 4173819 1161270..1162760 1 NC_008228.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1162760 4173819 Patl_0970 Pseudoalteromonas atlantica T6c glucose-6-phosphate 1-dehydrogenase YP_660550.1 1161270 D 342610 CDS YP_660551.1 109897296 4173820 1162762..1163454 1 NC_008228.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: cps:CPS_2282 6-phosphogluconolactonase; 6-phosphogluconolactonase 1163454 4173820 Patl_0971 Pseudoalteromonas atlantica T6c 6-phosphogluconolactonase YP_660551.1 1162762 D 342610 CDS YP_660552.1 109897297 4173821 1163464..1165287 1 NC_008228.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 1165287 4173821 Patl_0972 Pseudoalteromonas atlantica T6c phosphogluconate dehydratase YP_660552.1 1163464 D 342610 CDS YP_660553.1 109897298 4173822 1165290..1166243 1 NC_008228.1 KEGG: yps:YPTB2700 glucokinase; TIGRFAM: glucokinase; PFAM: Glucokinase; glucokinase 1166243 4173822 Patl_0973 Pseudoalteromonas atlantica T6c glucokinase YP_660553.1 1165290 D 342610 CDS YP_660554.1 109897299 4173823 1166249..1166896 1 NC_008228.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 1166896 4173823 Patl_0974 Pseudoalteromonas atlantica T6c keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_660554.1 1166249 D 342610 CDS YP_660555.1 109897300 4173824 complement(1166966..1167373) 1 NC_008228.1 KEGG: pha:PSHAa1887 hypothetical protein; hypothetical protein 1167373 4173824 Patl_0975 Pseudoalteromonas atlantica T6c hypothetical protein YP_660555.1 1166966 R 342610 CDS YP_660556.1 109897301 4173825 complement(1167439..1167789) 1 NC_008228.1 KEGG: cps:CPS_3290 hypothetical protein; hypothetical protein 1167789 4173825 Patl_0976 Pseudoalteromonas atlantica T6c hypothetical protein YP_660556.1 1167439 R 342610 CDS YP_660557.1 109897302 4173826 complement(1167867..1169177) 1 NC_008228.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 1169177 4173826 Patl_0977 Pseudoalteromonas atlantica T6c N-acetylglutamate synthase YP_660557.1 1167867 R 342610 CDS YP_660558.1 109897303 4173827 complement(1169201..1170577) 1 NC_008228.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 1170577 4173827 Patl_0978 Pseudoalteromonas atlantica T6c argininosuccinate lyase YP_660558.1 1169201 R 342610 CDS YP_660559.1 109897304 4173828 complement(1170577..1171815) 1 NC_008228.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 1171815 4173828 Patl_0979 Pseudoalteromonas atlantica T6c argininosuccinate synthase YP_660559.1 1170577 R 342610 CDS YP_660560.1 109897305 4173829 complement(1171851..1172768) 1 NC_008228.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 1172768 4173829 Patl_0980 Pseudoalteromonas atlantica T6c ornithine carbamoyltransferase YP_660560.1 1171851 R 342610 CDS YP_660561.1 109897306 4173830 complement(1172778..1173551) 1 NC_008228.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 1173551 4173830 Patl_0981 Pseudoalteromonas atlantica T6c acetylglutamate kinase YP_660561.1 1172778 R 342610 CDS YP_660562.1 109897307 4173831 complement(1173548..1174576) 1 NC_008228.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 1174576 argC 4173831 argC Pseudoalteromonas atlantica T6c N-acetyl-gamma-glutamyl-phosphate reductase YP_660562.1 1173548 R 342610 CDS YP_660563.1 109897308 4173832 1174917..1176062 1 NC_008228.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 1176062 4173832 Patl_0983 Pseudoalteromonas atlantica T6c acetylornithine deacetylase YP_660563.1 1174917 D 342610 CDS YP_660564.1 109897309 4173486 1176149..1177225 1 NC_008228.1 PFAM: Kelch repeat; KEGG: cps:CPS_3966 kelch motif domain protein; kelch repeat-containing protein 1177225 4173486 Patl_0984 Pseudoalteromonas atlantica T6c kelch repeat-containing protein YP_660564.1 1176149 D 342610 CDS YP_660565.1 109897310 4173487 1177288..1177695 1 NC_008228.1 catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 1177695 mgsA 4173487 mgsA Pseudoalteromonas atlantica T6c methylglyoxal synthase YP_660565.1 1177288 D 342610 CDS YP_660566.1 109897311 4173488 complement(1177846..1178694) 1 NC_008228.1 KEGG: cps:CPS_1751 hypothetical protein; hypothetical protein 1178694 4173488 Patl_0986 Pseudoalteromonas atlantica T6c hypothetical protein YP_660566.1 1177846 R 342610 CDS YP_660567.1 109897312 4173489 1178871..1179578 1 NC_008228.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: pha:PSHAa0375 transcriptional regulator; two component transcriptional regulator 1179578 4173489 Patl_0987 Pseudoalteromonas atlantica T6c two component transcriptional regulator YP_660567.1 1178871 D 342610 CDS YP_660568.1 109897313 4173490 1179575..1180978 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: pha:PSHAa0374 sensor histidine kinase protein; sensor signal transduction histidine kinase 1180978 4173490 Patl_0988 Pseudoalteromonas atlantica T6c sensor signal transduction histidine kinase YP_660568.1 1179575 D 342610 CDS YP_660569.1 109897314 4173491 1181180..1182088 1 NC_008228.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO4733 lysophospholipase L2; alpha/beta hydrolase fold protein 1182088 4173491 Patl_0989 Pseudoalteromonas atlantica T6c alpha/beta hydrolase fold protein YP_660569.1 1181180 D 342610 CDS YP_660570.1 109897315 4173492 1182154..1182618 1 NC_008228.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pha:PSHAa0371 tRNA/rRNA methyltransferase; RNA methyltransferase 1182618 4173492 Patl_0990 Pseudoalteromonas atlantica T6c RNA methyltransferase YP_660570.1 1182154 D 342610 CDS YP_660571.1 109897316 4173493 complement(1182710..1183423) 1 NC_008228.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 1183423 fre 4173493 fre Pseudoalteromonas atlantica T6c FMN reductase YP_660571.1 1182710 R 342610 CDS YP_660572.1 109897317 4173494 1183936..1184169 1 NC_008228.1 TIGRFAM: conserved hypothetical protein; KEGG: pha:PSHAb0336 hypothetical protein; hypothetical protein 1184169 4173494 Patl_0992 Pseudoalteromonas atlantica T6c hypothetical protein YP_660572.1 1183936 D 342610 CDS YP_660573.1 109897318 4173495 1184240..1184938 1 NC_008228.1 PFAM: Sel1-like repeat; KEGG: vch:VC2601 sodium-type flagellar protein MotX; Sel1 repeat-containing protein 1184938 4173495 Patl_0993 Pseudoalteromonas atlantica T6c Sel1 repeat-containing protein YP_660573.1 1184240 D 342610 CDS YP_660574.1 109897319 4173496 1185078..1187510 1 NC_008228.1 KEGG: ecc:c5263 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases ribonuclease R; PFAM: ribonuclease II RNA binding S1 Ribonuclease B, OB region-like; SMART: Cold shock protein; ribonuclease R 1187510 4173496 Patl_0994 Pseudoalteromonas atlantica T6c ribonuclease R YP_660574.1 1185078 D 342610 CDS YP_660575.1 109897320 4173497 1187513..1188253 1 NC_008228.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 1188253 4173497 Patl_0995 Pseudoalteromonas atlantica T6c 23S rRNA (guanosine-2'-O-)-methyltransferase YP_660575.1 1187513 D 342610 CDS YP_660576.1 109897321 4173498 complement(1188435..1188824) 1 NC_008228.1 KEGG: cps:CPS_3944 hypothetical protein; hypothetical protein 1188824 4173498 Patl_0996 Pseudoalteromonas atlantica T6c hypothetical protein YP_660576.1 1188435 R 342610 CDS YP_660577.1 109897322 4173499 1188877..1189770 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: vpa:VP2427 putative transcriptional regulator, LysR family; LysR family transcriptional regulator 1189770 4173499 Patl_0997 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_660577.1 1188877 D 342610 CDS YP_660578.1 109897323 4173500 1189933..1191573 1 NC_008228.1 PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO0355 AMP-binding protein; AMP-dependent synthetase and ligase 1191573 4173500 Patl_0998 Pseudoalteromonas atlantica T6c AMP-dependent synthetase and ligase YP_660578.1 1189933 D 342610 CDS YP_660579.1 109897324 4173501 1192107..1192472 1 NC_008228.1 TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: ilo:IL1906 ribosomal protein L14; 50S ribosomal protein L14 1192472 4173501 Patl_0999 Pseudoalteromonas atlantica T6c 50S ribosomal protein L14 YP_660579.1 1192107 D 342610 CDS YP_660580.1 109897325 4173502 1192485..1192799 1 NC_008228.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 1192799 rplX 4173502 rplX Pseudoalteromonas atlantica T6c 50S ribosomal protein L24 YP_660580.1 1192485 D 342610 CDS YP_660581.1 109897326 4173503 1192815..1193354 1 NC_008228.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 1193354 rplE 4173503 rplE Pseudoalteromonas atlantica T6c 50S ribosomal protein L5 YP_660581.1 1192815 D 342610 CDS YP_660582.1 109897327 4173504 1193365..1193670 1 NC_008228.1 PFAM: ribosomal protein S14; KEGG: plu:plu4713 30S ribosomal protein S14; 30S ribosomal protein S14 1193670 4173504 Patl_1002 Pseudoalteromonas atlantica T6c 30S ribosomal protein S14 YP_660582.1 1193365 D 342610 CDS YP_660583.1 109897328 4173505 1193683..1194075 1 NC_008228.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 1194075 rpsH 4173505 rpsH Pseudoalteromonas atlantica T6c 30S ribosomal protein S8 YP_660583.1 1193683 D 342610 CDS YP_660584.1 109897329 4171980 1194086..1194619 1 NC_008228.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 1194619 rplF 4171980 rplF Pseudoalteromonas atlantica T6c 50S ribosomal protein L6 YP_660584.1 1194086 D 342610 CDS YP_660585.1 109897330 4171981 1194632..1194985 1 NC_008228.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 1194985 rplR 4171981 rplR Pseudoalteromonas atlantica T6c 50S ribosomal protein L18 YP_660585.1 1194632 D 342610 CDS YP_660586.1 109897331 4171982 1194995..1195498 1 NC_008228.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 1195498 rpsE 4171982 rpsE Pseudoalteromonas atlantica T6c 30S ribosomal protein S5 YP_660586.1 1194995 D 342610 CDS YP_660587.1 109897332 4171983 1195499..1195687 1 NC_008228.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 1195687 rpmD 4171983 rpmD Pseudoalteromonas atlantica T6c 50S ribosomal protein L30 YP_660587.1 1195499 D 342610 CDS YP_660588.1 109897333 4171984 1195691..1196125 1 NC_008228.1 late assembly protein; 50S ribosomal protein L15 1196125 rplO 4171984 rplO Pseudoalteromonas atlantica T6c 50S ribosomal protein L15 YP_660588.1 1195691 D 342610 CDS YP_660589.1 109897334 4171985 1196131..1197450 1 NC_008228.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 1197450 secY 4171985 secY Pseudoalteromonas atlantica T6c preprotein translocase subunit SecY YP_660589.1 1196131 D 342610 CDS YP_660590.1 109897335 4171986 1197475..1197591 1 NC_008228.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 1197591 rpmJ 4171986 rpmJ Pseudoalteromonas atlantica T6c 50S ribosomal protein L36 YP_660590.1 1197475 D 342610 CDS YP_660591.1 109897336 4171987 1197717..1198073 1 NC_008228.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 1198073 rpsM 4171987 rpsM Pseudoalteromonas atlantica T6c 30S ribosomal protein S13 YP_660591.1 1197717 D 342610 CDS YP_660592.1 109897337 4171988 1198086..1198478 1 NC_008228.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 1198478 4171988 Patl_1012 Pseudoalteromonas atlantica T6c 30S ribosomal protein S11 YP_660592.1 1198086 D 342610 CDS YP_660593.1 109897338 4171989 1198503..1199123 1 NC_008228.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1199123 rpsD 4171989 rpsD Pseudoalteromonas atlantica T6c 30S ribosomal protein S4 YP_660593.1 1198503 D 342610 CDS YP_660594.1 109897339 4171990 1199146..1200135 1 NC_008228.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 1200135 4171990 Patl_1014 Pseudoalteromonas atlantica T6c DNA-directed RNA polymerase subunit alpha YP_660594.1 1199146 D 342610 CDS YP_660595.1 109897340 4171991 1200173..1200574 1 NC_008228.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 1200574 rplQ 4171991 rplQ Pseudoalteromonas atlantica T6c 50S ribosomal protein L17 YP_660595.1 1200173 D 342610 CDS YP_660596.1 109897341 4171992 complement(1200965..1201738) 1 NC_008228.1 KEGG: ilo:IL1889 hypothetical protein; hypothetical protein 1201738 4171992 Patl_1016 Pseudoalteromonas atlantica T6c hypothetical protein YP_660596.1 1200965 R 342610 CDS YP_660597.1 109897342 4173296 1208246..1208902 1 NC_008228.1 PFAM: nitroreductase; KEGG: vpa:VPA1108 putative NAD(P)H-flavin reductase; nitroreductase 1208902 4173296 Patl_1017 Pseudoalteromonas atlantica T6c nitroreductase YP_660597.1 1208246 D 342610 CDS YP_660598.1 109897343 4173297 complement(1208973..1209953) 1 NC_008228.1 TIGRFAM: formiminoglutamase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: pae:PA3175 formiminoglutamase; formiminoglutamase 1209953 4173297 Patl_1018 Pseudoalteromonas atlantica T6c formiminoglutamase YP_660598.1 1208973 R 342610 CDS YP_660599.1 109897344 4173298 complement(1209937..1211160) 1 NC_008228.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 1211160 4173298 Patl_1019 Pseudoalteromonas atlantica T6c imidazolonepropionase YP_660599.1 1209937 R 342610 CDS YP_660600.1 109897345 4173299 1211257..1211991 1 NC_008228.1 TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: son:SO0096 histidine utilization repressor; histidine utilization repressor 1211991 4173299 Patl_1020 Pseudoalteromonas atlantica T6c histidine utilization repressor YP_660600.1 1211257 D 342610 CDS YP_660601.1 109897346 4173300 1211975..1213675 1 NC_008228.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 1213675 4173300 Patl_1021 Pseudoalteromonas atlantica T6c urocanate hydratase YP_660601.1 1211975 D 342610 CDS YP_660602.1 109897347 4173301 1213678..1215207 1 NC_008228.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 1215207 4173301 Patl_1022 Pseudoalteromonas atlantica T6c histidine ammonia-lyase YP_660602.1 1213678 D 342610 CDS YP_660603.1 109897348 4173302 1215304..1216086 1 NC_008228.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: pha:PSHAb0347 putative peptidyl-prolyl cis-trans isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase 1216086 4173302 Patl_1023 Pseudoalteromonas atlantica T6c cyclophilin type peptidyl-prolyl cis-trans isomerase YP_660603.1 1215304 D 342610 CDS YP_660604.1 109897349 4173303 complement(1216153..1218024) 1 NC_008228.1 TIGRFAM: small GTP-binding protein GTP-binding protein TypA; PFAM: elongation factor G-like protein synthesis factor, GTP-binding elongation factor Tu, domain 2; KEGG: vpa:VP0122 BipA protein; GTP-binding protein TypA 1218024 4173303 Patl_1024 Pseudoalteromonas atlantica T6c GTP-binding protein TypA YP_660604.1 1216153 R 342610 CDS YP_660605.1 109897350 4173304 1218364..1219773 1 NC_008228.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 1219773 glnA 4173304 glnA Pseudoalteromonas atlantica T6c glutamine synthetase YP_660605.1 1218364 D 342610 CDS YP_660606.1 109897351 4173305 1219943..1220497 1 NC_008228.1 KEGG: son:SO4470 hypothetical protein; hypothetical protein 1220497 4173305 Patl_1026 Pseudoalteromonas atlantica T6c hypothetical protein YP_660606.1 1219943 D 342610 CDS YP_660607.1 109897352 4173306 1220581..1221660 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold; SMART: PAS; KEGG: vvy:VV0197 nitrogen regulation protein NtrB; signal transduction histidine kinase, nitrogen specific, NtrB 1221660 4173306 Patl_1027 Pseudoalteromonas atlantica T6c signal transduction histidine kinase, nitrogen specific, NtrB YP_660607.1 1220581 D 342610 CDS YP_660608.1 109897353 4173307 1221657..1223063 1 NC_008228.1 KEGG: son:SO4472 nitrogen regulation protein NR(I); TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver sigma-54 factor, interaction region helix-turn-helix, Fis-type ATPase associated with various cellular activities, AAA_5; SMART: ATPase; nitrogen metabolism transcriptional regulator, NtrC, Fis family 1223063 4173307 Patl_1028 Pseudoalteromonas atlantica T6c nitrogen metabolism transcriptional regulator, NtrC, Fis family YP_660608.1 1221657 D 342610 CDS YP_660609.1 109897354 4173308 complement(1223130..1224269) 1 NC_008228.1 PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: Hpt; KEGG: hch:HCH_04935 HD-GYP domain; metal dependent phosphohydrolase 1224269 4173308 Patl_1029 Pseudoalteromonas atlantica T6c metal dependent phosphohydrolase YP_660609.1 1223130 R 342610 CDS YP_660610.1 109897355 4173309 1224455..1225174 1 NC_008228.1 KEGG: pha:PSHAa2584 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 1225174 4173309 Patl_1030 Pseudoalteromonas atlantica T6c 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_660610.1 1224455 D 342610 CDS YP_660611.1 109897356 4173310 1225207..1225560 1 NC_008228.1 PFAM: protein of unknown function DUF1260; KEGG: son:SO0568 hypothetical protein; hypothetical protein 1225560 4173310 Patl_1031 Pseudoalteromonas atlantica T6c hypothetical protein YP_660611.1 1225207 D 342610 CDS YP_660612.1 109897357 4173311 1225682..1226419 1 NC_008228.1 KEGG: son:SO4645 hypothetical protein; hypothetical protein 1226419 4173311 Patl_1032 Pseudoalteromonas atlantica T6c hypothetical protein YP_660612.1 1225682 D 342610 CDS YP_660613.1 109897358 4172819 1226869..1231380 1 NC_008228.1 PFAM: Endonuclease/exonuclease/phosphatase Endonuclease I; KEGG: cps:CPS_2634 extracellular ribonuclease/nuclease fusion protein; endonuclease I 1231380 4172819 Patl_1033 Pseudoalteromonas atlantica T6c endonuclease I YP_660613.1 1226869 D 342610 CDS YP_660614.1 109897359 4172820 1231418..1231969 1 NC_008228.1 TIGRFAM: PEP motif putative anchor-like; PFAM: cellulosome anchoring protein, cohesin region; PEP domain-containing protein 1231969 4172820 Patl_1034 Pseudoalteromonas atlantica T6c PEP domain-containing protein YP_660614.1 1231418 D 342610 CDS YP_660615.1 109897360 4172821 1232391..1236815 1 NC_008228.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin protease-associated PA proteinase inhibitor I9, subtilisin propeptide; KEGG: son:SO1915 serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin 1236815 4172821 Patl_1035 Pseudoalteromonas atlantica T6c peptidase S8/S53 subtilisin kexin sedolisin YP_660615.1 1232391 D 342610 CDS YP_660616.1 109897361 4172822 1237190..1238254 1 NC_008228.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: ilo:IL2305 HlyD family secretion protein; RND family efflux transporter MFP subunit 1238254 4172822 Patl_1036 Pseudoalteromonas atlantica T6c RND family efflux transporter MFP subunit YP_660616.1 1237190 D 342610 CDS YP_660617.1 109897362 4172823 1238260..1241370 1 NC_008228.1 PFAM: acriflavin resistance protein; KEGG: ilo:IL2304 RND family efflux transporter; acriflavin resistance protein 1241370 4172823 Patl_1037 Pseudoalteromonas atlantica T6c acriflavin resistance protein YP_660617.1 1238260 D 342610 CDS YP_660618.1 109897363 4172824 complement(1241650..1243491) 1 NC_008228.1 TIGRFAM: RNA polymerase sigma factor RpoD; PFAM: sigma-70 region 1.1 sigma-70 region 3 sigma-70 region 2 sigma-70 region 4 sigma-70, non-essential region sigma-70 region 1.2; KEGG: son:SO1284 RNA polymerase sigma-70 factor; RNA polymerase sigma-70 subunit RpoD 1243491 4172824 Patl_1038 Pseudoalteromonas atlantica T6c RNA polymerase sigma-70 subunit RpoD YP_660618.1 1241650 R 342610 CDS YP_660619.1 109897364 4172825 complement(1243637..1245403) 1 NC_008228.1 KEGG: cps:CPS_4335 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-type TOPRIM domain containing protein DNA primase DnaG, DnaB-binding DNA primase catalytic core-like; SMART: Toprim subdomain; DNA primase 1245403 4172825 Patl_1039 Pseudoalteromonas atlantica T6c DNA primase YP_660619.1 1243637 R 342610 CDS YP_660620.1 109897365 4172826 complement(1245558..1246001) 1 NC_008228.1 PFAM: GatB/Yqey; KEGG: vpa:VP0406 hypothetical protein; hypothetical protein 1246001 4172826 Patl_1040 Pseudoalteromonas atlantica T6c hypothetical protein YP_660620.1 1245558 R 342610 CDS YP_660621.1 109897366 4172827 complement(1246086..1246301) 1 NC_008228.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 1246301 rpsU 4172827 rpsU Pseudoalteromonas atlantica T6c 30S ribosomal protein S21 YP_660621.1 1246086 R 342610 CDS YP_660622.1 109897367 4172828 1246520..1247533 1 NC_008228.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 1247533 4172828 Patl_1042 Pseudoalteromonas atlantica T6c putative DNA-binding/iron metalloprotein/AP endonuclease YP_660622.1 1246520 D 342610 CDS YP_660623.1 109897368 4172829 complement(1247613..1248215) 1 NC_008228.1 PFAM: protein of unknown function DUF205; KEGG: ppr:PBPRA0435 putative membrane protein; hypothetical protein 1248215 4172829 Patl_1043 Pseudoalteromonas atlantica T6c hypothetical protein YP_660623.1 1247613 R 342610 CDS YP_660624.1 109897369 4172830 1248292..1248651 1 NC_008228.1 TIGRFAM: dihydroneopterin aldolase; KEGG: xcb:XC_3887 dihydroneopterin aldolase; dihydroneopterin aldolase 1248651 4172830 Patl_1044 Pseudoalteromonas atlantica T6c dihydroneopterin aldolase YP_660624.1 1248292 D 342610 CDS YP_660625.1 109897370 4172831 1248648..1249166 1 NC_008228.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: son:SO1292 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1249166 4172831 Patl_1045 Pseudoalteromonas atlantica T6c 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_660625.1 1248648 D 342610 CDS YP_660626.1 109897371 4172832 1249163..1249963 1 NC_008228.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 1249963 4172832 Patl_1046 Pseudoalteromonas atlantica T6c undecaprenyl pyrophosphate phosphatase YP_660626.1 1249163 D 342610 CDS YP_660627.1 109897372 4172833 1249988..1250353 1 NC_008228.1 PFAM: histidine triad (HIT) protein; KEGG: hch:HCH_00759 diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; histidine triad (HIT) protein 1250353 4172833 Patl_1047 Pseudoalteromonas atlantica T6c histidine triad (HIT) protein YP_660627.1 1249988 D 342610 CDS YP_660628.1 109897373 4172834 complement(1250458..1252458) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: cps:CPS_1138 GGDEF/EAL domain protein; diguanylate cyclase/phosphodiesterase 1252458 4172834 Patl_1048 Pseudoalteromonas atlantica T6c diguanylate cyclase/phosphodiesterase YP_660628.1 1250458 R 342610 CDS YP_660629.1 109897374 4172835 complement(1252499..1254187) 1 NC_008228.1 KEGG: pha:PSHAa2383 hypothetical protein; hypothetical protein 1254187 4172835 Patl_1049 Pseudoalteromonas atlantica T6c hypothetical protein YP_660629.1 1252499 R 342610 CDS YP_660630.1 109897375 4172836 1254453..1255289 1 NC_008228.1 KEGG: pha:PSHAa2382 signal transduction protein; putative signal transduction protein 1255289 4172836 Patl_1050 Pseudoalteromonas atlantica T6c putative signal transduction protein YP_660630.1 1254453 D 342610 CDS YP_660631.1 109897376 4172837 complement(1255365..1256270) 1 NC_008228.1 Required for efficient pilin antigenic variation; recombination associated protein 1256270 rdgC 4172837 rdgC Pseudoalteromonas atlantica T6c recombination associated protein YP_660631.1 1255365 R 342610 CDS YP_660632.1 109897377 4172838 complement(1256370..1258109) 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: ilo:IL2120 signal transduction histidine kinase; sensor signal transduction histidine kinase 1258109 4172838 Patl_1052 Pseudoalteromonas atlantica T6c sensor signal transduction histidine kinase YP_660632.1 1256370 R 342610 CDS YP_660633.1 109897378 4172839 1258355..1259044 1 NC_008228.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: vfi:VF1988 phosphate regulon transcriptional regulatory protein PhoB; two component transcriptional regulator 1259044 4172839 Patl_1053 Pseudoalteromonas atlantica T6c two component transcriptional regulator YP_660633.1 1258355 D 342610 CDS YP_660634.1 109897379 4172840 1259106..1260416 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold; KEGG: pha:PSHAa0598 phosphate regulon sensor protein PhoR; histidine kinase 1260416 4172840 Patl_1054 Pseudoalteromonas atlantica T6c histidine kinase YP_660634.1 1259106 D 342610 CDS YP_660635.1 109897380 4172841 1260653..1262254 1 NC_008228.1 KEGG: pha:PSHAb0526 hypothetical protein; hypothetical protein 1262254 4172841 Patl_1055 Pseudoalteromonas atlantica T6c hypothetical protein YP_660635.1 1260653 D 342610 CDS YP_660636.1 109897381 4172842 1262322..1264988 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ilo:IL0619 outer membrane protein; TonB-dependent receptor 1264988 4172842 Patl_1056 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_660636.1 1262322 D 342610 CDS YP_660637.1 109897382 4172843 complement(1265043..1265750) 1 NC_008228.1 PFAM: lipase, class 2; KEGG: cel:K12B6.3 Hypothetical protein K12B6.3; lipase, class 2 1265750 4172843 Patl_1057 Pseudoalteromonas atlantica T6c lipase, class 2 YP_660637.1 1265043 R 342610 CDS YP_660638.1 109897383 4172844 1265921..1267972 1 NC_008228.1 PFAM: iron permease FTR1; KEGG: ilo:IL0111 high-affinity Fe2+/Pb2+ permease; iron permease FTR1 1267972 4172844 Patl_1058 Pseudoalteromonas atlantica T6c iron permease FTR1 YP_660638.1 1265921 D 342610 CDS YP_660639.1 109897384 4172845 complement(1268066..1270399) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC1970 TonB-dependent receptor; TonB-dependent receptor 1270399 4172845 Patl_1059 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_660639.1 1268066 R 342610 CDS YP_660640.1 109897385 4172846 1270925..1271695 1 NC_008228.1 KEGG: pha:PSHAb0520 conserved protein of unknown function ; putative secreted protein; hypothetical protein 1271695 4172846 Patl_1060 Pseudoalteromonas atlantica T6c hypothetical protein YP_660640.1 1270925 D 342610 CDS YP_660641.1 109897386 4172847 1271703..1273112 1 NC_008228.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: ilo:IL2118 TonB system biopolymer transport component; MotA/TolQ/ExbB proton channel 1273112 4172847 Patl_1061 Pseudoalteromonas atlantica T6c MotA/TolQ/ExbB proton channel YP_660641.1 1271703 D 342610 CDS YP_660642.1 109897387 4172848 1273124..1273645 1 NC_008228.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: ilo:IL2117 TonB system biopolymer transport component; MotA/TolQ/ExbB proton channel 1273645 4172848 Patl_1062 Pseudoalteromonas atlantica T6c MotA/TolQ/ExbB proton channel YP_660642.1 1273124 D 342610 CDS YP_660643.1 109897388 4172849 1273676..1274083 1 NC_008228.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ilo:IL2116 biopolymer transport protein; biopolymer transport protein ExbD/TolR 1274083 4172849 Patl_1063 Pseudoalteromonas atlantica T6c biopolymer transport protein ExbD/TolR YP_660643.1 1273676 D 342610 CDS YP_660644.1 109897389 4172850 1274087..1274695 1 NC_008228.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pha:PSHAb0524 putative TonB2 protein; TonB family protein 1274695 4172850 Patl_1064 Pseudoalteromonas atlantica T6c TonB family protein YP_660644.1 1274087 D 342610 CDS YP_660645.1 109897390 4172851 1274707..1276050 1 NC_008228.1 PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: pha:PSHAb0525 putative unknown membrane associated protein; hypothetical protein 1276050 4172851 Patl_1065 Pseudoalteromonas atlantica T6c hypothetical protein YP_660645.1 1274707 D 342610 CDS YP_660646.1 109897391 4172852 1276355..1276924 1 NC_008228.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: cps:CPS_4717 alkyl hydroperoxide reductase, subunit C; alkyl hydroperoxide reductase 1276924 4172852 Patl_1066 Pseudoalteromonas atlantica T6c alkyl hydroperoxide reductase YP_660646.1 1276355 D 342610 CDS YP_660647.1 109897392 4172853 1277044..1278651 1 NC_008228.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO0956 alkyl hydroperoxide reductase, F subunit; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1278651 4172853 Patl_1067 Pseudoalteromonas atlantica T6c FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_660647.1 1277044 D 342610 CDS YP_660648.1 109897393 4172854 1279154..1279744 1 NC_008228.1 hypothetical protein 1279744 4172854 Patl_1068 Pseudoalteromonas atlantica T6c hypothetical protein YP_660648.1 1279154 D 342610 CDS YP_660649.1 109897394 4172855 1279741..1282479 1 NC_008228.1 PFAM: glycoside hydrolase, family 8; KEGG: bha:BH2105 xylanase Y; glycoside hydrolase 1282479 4172855 Patl_1069 Pseudoalteromonas atlantica T6c glycoside hydrolase YP_660649.1 1279741 D 342610 CDS YP_660650.1 109897395 4172856 complement(1282626..1284035) 1 NC_008228.1 PFAM: sugar transferase; KEGG: vvu:VV21582 sugar transferase involved in lipopolysaccharide synthesis; sugar transferase 1284035 4172856 Patl_1070 Pseudoalteromonas atlantica T6c sugar transferase YP_660650.1 1282626 R 342610 CDS YP_660651.1 109897396 4172857 1284958..1286100 1 NC_008228.1 KEGG: vch:VC0935 hypothetical protein; hypothetical protein 1286100 4172857 Patl_1071 Pseudoalteromonas atlantica T6c hypothetical protein YP_660651.1 1284958 D 342610 CDS YP_660652.1 109897397 4172611 1286124..1286660 1 NC_008228.1 PFAM: polysaccharide export protein; KEGG: hch:HCH_04680 periplasmic protein involved in polysaccharide export; polysaccharide export protein 1286660 4172611 Patl_1072 Pseudoalteromonas atlantica T6c polysaccharide export protein YP_660652.1 1286124 D 342610 CDS YP_660653.1 109897398 4172612 1286678..1288945 1 NC_008228.1 PFAM: lipopolysaccharide biosynthesis; KEGG: pha:PSHAa1780 exopolysaccharide biosynthesis protein; protein-tyrosine kinase 1288945 4172612 Patl_1073 Pseudoalteromonas atlantica T6c protein-tyrosine kinase YP_660653.1 1286678 D 342610 CDS YP_660654.1 109897399 4172613 1288942..1289670 1 NC_008228.1 PFAM: PHP-like; KEGG: pha:PSHAa1779 capsular polysaccharide biosynthesis, CapC; PHP-like protein 1289670 4172613 Patl_1074 Pseudoalteromonas atlantica T6c PHP-like protein YP_660654.1 1288942 D 342610 CDS YP_660655.1 109897400 4172614 1289661..1290404 1 NC_008228.1 KEGG: vch:VC0938 hypothetical protein; hypothetical protein 1290404 4172614 Patl_1075 Pseudoalteromonas atlantica T6c hypothetical protein YP_660655.1 1289661 D 342610 CDS YP_660656.1 109897401 4172615 complement(1290461..1290865) 1 NC_008228.1 KEGG: vvu:VV12311 hypothetical protein; hypothetical protein 1290865 4172615 Patl_1076 Pseudoalteromonas atlantica T6c hypothetical protein YP_660656.1 1290461 R 342610 CDS YP_660657.1 109897402 4172616 complement(1290862..1292163) 1 NC_008228.1 PFAM: O-antigen polymerase; KEGG: vch:VC0931 hypothetical protein; O-antigen polymerase 1292163 4172616 Patl_1077 Pseudoalteromonas atlantica T6c O-antigen polymerase YP_660657.1 1290862 R 342610 CDS YP_660658.1 109897403 4172617 complement(1292378..1293022) 1 NC_008228.1 KEGG: vch:VC0932 hypothetical protein; hypothetical protein 1293022 4172617 Patl_1078 Pseudoalteromonas atlantica T6c hypothetical protein YP_660658.1 1292378 R 342610 CDS YP_660659.1 109897404 4172618 complement(1293262..1295253) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: tcx:Tcr_0208 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains); diguanylate cyclase/phosphodiesterase 1295253 4172618 Patl_1079 Pseudoalteromonas atlantica T6c diguanylate cyclase/phosphodiesterase YP_660659.1 1293262 R 342610 CDS YP_660660.1 109897405 4172619 complement(1295275..1295922) 1 NC_008228.1 KEGG: hch:HCH_03939 predicted periplasmic protein; hypothetical protein 1295922 4172619 Patl_1080 Pseudoalteromonas atlantica T6c hypothetical protein YP_660660.1 1295275 R 342610 CDS YP_660661.1 109897406 4172620 1296393..1298954 1 NC_008228.1 KEGG: hch:HCH_04697 hypothetical protein; hypothetical protein 1298954 4172620 Patl_1081 Pseudoalteromonas atlantica T6c hypothetical protein YP_660661.1 1296393 D 342610 CDS YP_660662.1 109897407 4172621 1299125..1299760 1 NC_008228.1 hypothetical protein 1299760 4172621 Patl_1082 Pseudoalteromonas atlantica T6c hypothetical protein YP_660662.1 1299125 D 342610 CDS YP_660663.1 109897408 4172622 complement(1299944..1301398) 1 NC_008228.1 PFAM: polysaccharide biosynthesis protein; KEGG: gvi:gll1781 probable polysaccharide transport protein; polysaccharide biosynthesis protein 1301398 4172622 Patl_1083 Pseudoalteromonas atlantica T6c polysaccharide biosynthesis protein YP_660663.1 1299944 R 342610 CDS YP_660664.1 109897409 4172623 1301914..1303821 1 NC_008228.1 PFAM: acyltransferase 3; KEGG: rsp:RSP_2692 acyltransferase domain (LPS); acyltransferase 3 1303821 4172623 Patl_1084 Pseudoalteromonas atlantica T6c acyltransferase 3 YP_660664.1 1301914 D 342610 CDS YP_660665.1 109897410 4172624 complement(1303915..1304985) 1 NC_008228.1 PFAM: glycosyl transferase, group 1; KEGG: sab:SAB0901 probable glycosyl transferase; group 1 glycosyl transferase 1304985 4172624 Patl_1085 Pseudoalteromonas atlantica T6c group 1 glycosyl transferase YP_660665.1 1303915 R 342610 CDS YP_660666.1 109897411 4172625 complement(1305039..1306010) 1 NC_008228.1 KEGG: bfs:BF4300 putative exopolysaccharide biosynthesis protein; hypothetical protein 1306010 4172625 Patl_1086 Pseudoalteromonas atlantica T6c hypothetical protein YP_660666.1 1305039 R 342610 CDS YP_660667.1 109897412 4172626 1306704..1307696 1 NC_008228.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: ppr:PBPRA0207 putative nucleotide sugar epimerase; NAD-dependent epimerase/dehydratase 1307696 4172626 Patl_1087 Pseudoalteromonas atlantica T6c NAD-dependent epimerase/dehydratase YP_660667.1 1306704 D 342610 CDS YP_660668.1 109897413 4172627 1307943..1308770 1 NC_008228.1 TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: hch:HCH_04683 glycosyltransferase; WecB/TagA/CpsF family glycosyl transferase 1308770 4172627 Patl_1088 Pseudoalteromonas atlantica T6c WecB/TagA/CpsF family glycosyl transferase YP_660668.1 1307943 D 342610 CDS YP_660669.1 109897414 4172628 1308780..1309871 1 NC_008228.1 PFAM: glycosyl transferase, group 1; KEGG: hch:HCH_04683 glycosyltransferase; group 1 glycosyl transferase 1309871 4172628 Patl_1089 Pseudoalteromonas atlantica T6c group 1 glycosyl transferase YP_660669.1 1308780 D 342610 CDS YP_660670.1 109897415 4172629 1309875..1311002 1 NC_008228.1 PFAM: glycosyl transferase, group 1; KEGG: hch:HCH_04684 glycosyltransferase; group 1 glycosyl transferase 1311002 4172629 Patl_1090 Pseudoalteromonas atlantica T6c group 1 glycosyl transferase YP_660670.1 1309875 D 342610 CDS YP_660671.1 109897416 4172630 1311017..1312306 1 NC_008228.1 KEGG: hch:HCH_04685 exopolysaccharide production protein; exopolysaccharide production protein 1312306 4172630 Patl_1091 Pseudoalteromonas atlantica T6c exopolysaccharide production protein YP_660671.1 1311017 D 342610 CDS YP_660672.1 109897417 4173621 1312303..1313250 1 NC_008228.1 PFAM: glycosyl transferase, family 2; KEGG: hch:HCH_04693 glycosyltransferase involved in cell wall biogenesis; glycosyl transferase family protein 1313250 4173621 Patl_1092 Pseudoalteromonas atlantica T6c glycosyl transferase family protein YP_660672.1 1312303 D 342610 CDS YP_660673.1 109897418 4173622 complement(1313415..1314410) 1 NC_008228.1 PFAM: acyltransferase 3; KEGG: rpa:RPA0536 acyltransferase 3 family; acyltransferase 3 1314410 4173622 Patl_1093 Pseudoalteromonas atlantica T6c acyltransferase 3 YP_660673.1 1313415 R 342610 CDS YP_660674.1 109897419 4173623 1315152..1315976 1 NC_008228.1 KEGG: xoo:XOO3169 GumL; GumL protein 1315976 4173623 Patl_1094 Pseudoalteromonas atlantica T6c GumL protein YP_660674.1 1315152 D 342610 CDS YP_660675.1 109897420 4173624 1316024..1317169 1 NC_008228.1 PFAM: acyltransferase 3; KEGG: atc:AGR_C_3040 hypothetical protein; acyltransferase 3 1317169 4173624 Patl_1095 Pseudoalteromonas atlantica T6c acyltransferase 3 YP_660675.1 1316024 D 342610 CDS YP_660676.1 109897421 4173625 complement(1317430..1319274) 1 NC_008228.1 PFAM: acyltransferase 3; KEGG: par:Psyc_0638 possible acyltransferase family protein; acyltransferase 3 1319274 4173625 Patl_1096 Pseudoalteromonas atlantica T6c acyltransferase 3 YP_660676.1 1317430 R 342610 CDS YP_660677.1 109897422 4173626 complement(1319374..1320021) 1 NC_008228.1 KEGG: sye:Syncc9902_0044 hypothetical protein; hypothetical protein 1320021 4173626 Patl_1097 Pseudoalteromonas atlantica T6c hypothetical protein YP_660677.1 1319374 R 342610 CDS YP_660678.1 109897423 4173627 1320773..1321690 1 NC_008228.1 hypothetical protein 1321690 4173627 Patl_1098 Pseudoalteromonas atlantica T6c hypothetical protein YP_660678.1 1320773 D 342610 CDS YP_660679.1 109897424 4173628 1321970..1322884 1 NC_008228.1 hypothetical protein 1322884 4173628 Patl_1099 Pseudoalteromonas atlantica T6c hypothetical protein YP_660679.1 1321970 D 342610 CDS YP_660680.1 109897425 4173629 1323322..1324146 1 NC_008228.1 KEGG: xcv:XCV2777 xanthan biosynthesis pyruvyltransferase GumL; xanthan biosynthesis pyruvyltransferase GumL 1324146 4173629 Patl_1100 Pseudoalteromonas atlantica T6c xanthan biosynthesis pyruvyltransferase GumL YP_660680.1 1323322 D 342610 CDS YP_660681.1 109897426 4173630 1324578..1326056 1 NC_008228.1 KEGG: nar:Saro_0670 hypothetical protein; hypothetical protein 1326056 4173630 Patl_1101 Pseudoalteromonas atlantica T6c hypothetical protein YP_660681.1 1324578 D 342610 CDS YP_660682.1 109897427 4173631 1326404..1328806 1 NC_008228.1 KEGG: pha:PSHAa0464 hypothetical protein; hypothetical protein 1328806 4173631 Patl_1102 Pseudoalteromonas atlantica T6c hypothetical protein YP_660682.1 1326404 D 342610 CDS YP_660683.1 109897428 4173632 complement(1329011..1329430) 1 NC_008228.1 KEGG: cps:CPS_4685 hypothetical protein; hypothetical protein 1329430 4173632 Patl_1103 Pseudoalteromonas atlantica T6c hypothetical protein YP_660683.1 1329011 R 342610 CDS YP_660684.1 109897429 4173633 complement(1329512..1330879) 1 NC_008228.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1330879 4173633 Patl_1104 Pseudoalteromonas atlantica T6c coproporphyrinogen III oxidase YP_660684.1 1329512 R 342610 CDS YP_660685.1 109897430 4173634 complement(1331029..1332441) 1 NC_008228.1 KEGG: dar:Daro_1852 hypothetical protein; hypothetical protein 1332441 4173634 Patl_1105 Pseudoalteromonas atlantica T6c hypothetical protein YP_660685.1 1331029 R 342610 CDS YP_660686.1 109897431 4173635 complement(1332556..1333830) 1 NC_008228.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: zmo:ZMO1604 phosphodiesterase-nucleotide pyrophosphatase; phosphodiesterase I 1333830 4173635 Patl_1106 Pseudoalteromonas atlantica T6c phosphodiesterase I YP_660686.1 1332556 R 342610 CDS YP_660687.1 109897432 4173636 1334429..1336039 1 NC_008228.1 PFAM: Catalase-like; KEGG: pae:PA4613 catalase; catalase 1336039 4173636 Patl_1107 Pseudoalteromonas atlantica T6c catalase YP_660687.1 1334429 D 342610 CDS YP_660688.1 109897433 4173637 1336224..1336817 1 NC_008228.1 PFAM: Ankyrin; KEGG: pfl:PFL_5357 ankyrin domain protein; ankyrin 1336817 4173637 Patl_1108 Pseudoalteromonas atlantica T6c ankyrin YP_660688.1 1336224 D 342610 CDS YP_660689.1 109897434 4173638 1337108..1338571 1 NC_008228.1 KEGG: pha:PSHAb0210 cold-shock regulated carbon starvation protein A; cold-shock regulated carbon starvation protein A 1338571 4173638 Patl_1109 Pseudoalteromonas atlantica T6c cold-shock regulated carbon starvation protein A YP_660689.1 1337108 D 342610 CDS YP_660690.1 109897435 4173639 complement(1338748..1340625) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC1750 TonB-dependent receptor; TonB-dependent receptor 1340625 4173639 Patl_1110 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_660690.1 1338748 R 342610 CDS YP_660691.1 109897436 4172286 complement(1341544..1342527) 1 NC_008228.1 PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAb0050 hypothetical protein; hypothetical protein 1342527 4172286 Patl_1111 Pseudoalteromonas atlantica T6c hypothetical protein YP_660691.1 1341544 R 342610 CDS YP_660692.1 109897437 4172287 complement(1342810..1344117) 1 NC_008228.1 PFAM: DSBA oxidoreductase; KEGG: cps:CPS_2425 DsbA-like thioredoxin domain protein; DSBA oxidoreductase 1344117 4172287 Patl_1112 Pseudoalteromonas atlantica T6c DSBA oxidoreductase YP_660692.1 1342810 R 342610 CDS YP_660693.1 109897438 4172288 1344290..1345309 1 NC_008228.1 PFAM: helix-turn-helix, AraC type; KEGG: pae:PA0831 transcriptional regulator OruR; AraC family transcriptional regulator 1345309 4172288 Patl_1113 Pseudoalteromonas atlantica T6c AraC family transcriptional regulator YP_660693.1 1344290 D 342610 CDS YP_660694.1 109897439 4172289 complement(1345397..1346794) 1 NC_008228.1 PFAM: biotin/lipoyl attachment catalytic domain of components of various dehydrogenase complexes E3 binding; KEGG: bur:Bcep18194_A5442 dihydrolipoamide acetyltransferase; dehydrogenase catalytic domain-containing protein 1346794 4172289 Patl_1114 Pseudoalteromonas atlantica T6c dehydrogenase catalytic domain-containing protein YP_660694.1 1345397 R 342610 CDS YP_660695.1 109897440 4172290 complement(1346797..1349496) 1 NC_008228.1 paralogs to the E1 component of pyruvate dehydrogenase subunit E1; 2-oxoacid dehydrogenase subunit E1 1349496 4172290 Patl_1115 Pseudoalteromonas atlantica T6c 2-oxoacid dehydrogenase subunit E1 YP_660695.1 1346797 R 342610 CDS YP_660696.1 109897441 4172291 1350205..1351659 1 NC_008228.1 hypothetical protein 1351659 4172291 Patl_1116 Pseudoalteromonas atlantica T6c hypothetical protein YP_660696.1 1350205 D 342610 CDS YP_660697.1 109897442 4172292 1352175..1354994 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: xcb:XC_1546 TonB-dependent receptor; TonB-dependent receptor 1354994 4172292 Patl_1117 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_660697.1 1352175 D 342610 CDS YP_660698.1 109897443 4172293 1355270..1356508 1 NC_008228.1 PFAM: Citrate carrier protein; KEGG: stm:STM0057 putative citrate-sodium symport; citrate carrier protein 1356508 4172293 Patl_1118 Pseudoalteromonas atlantica T6c citrate carrier protein YP_660698.1 1355270 D 342610 CDS YP_660699.1 109897444 4172294 1356525..1357883 1 NC_008228.1 KEGG: chy:CHY_0583 hypothetical protein; hypothetical protein 1357883 4172294 Patl_1119 Pseudoalteromonas atlantica T6c hypothetical protein YP_660699.1 1356525 D 342610 CDS YP_660700.1 109897445 4172295 1357904..1358227 1 NC_008228.1 KEGG: ecs:ECs0759 hypothetical protein; hypothetical protein 1358227 4172295 Patl_1120 Pseudoalteromonas atlantica T6c hypothetical protein YP_660700.1 1357904 D 342610 CDS YP_660701.1 109897446 4172296 1358477..1359487 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: reu:Reut_A3085 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 1359487 4172296 Patl_1121 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_660701.1 1358477 D 342610 CDS YP_660702.1 109897447 4172297 complement(1359562..1360017) 1 NC_008228.1 PFAM: regulatory protein, MarR; KEGG: bja:blr2331 transcriptional regulatory protein; MarR family transcriptional regulator 1360017 4172297 Patl_1122 Pseudoalteromonas atlantica T6c MarR family transcriptional regulator YP_660702.1 1359562 R 342610 CDS YP_660703.1 109897448 4172298 complement(1360350..1361663) 1 NC_008228.1 KEGG: pha:PSHAa2169 fumarylacetoacetase (fumarylacetoacetate hydrolase) (beta-diketonase)(FAA); TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetase 1361663 4172298 Patl_1123 Pseudoalteromonas atlantica T6c fumarylacetoacetase YP_660703.1 1360350 R 342610 CDS YP_660704.1 109897449 4172299 complement(1361729..1362259) 1 NC_008228.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_4358 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 1362259 4172299 Patl_1124 Pseudoalteromonas atlantica T6c glyoxalase/bleomycin resistance protein/dioxygenase YP_660704.1 1361729 R 342610 CDS YP_660705.1 109897450 4172300 complement(1362333..1363409) 1 NC_008228.1 KEGG: nar:Saro_0597 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 1363409 4172300 Patl_1125 Pseudoalteromonas atlantica T6c 4-hydroxyphenylpyruvate dioxygenase YP_660705.1 1362333 R 342610 CDS YP_660706.1 109897451 4172301 complement(1363771..1364238) 1 NC_008228.1 PFAM: protein of unknown function DUF1348; KEGG: pfo:Pfl_2878 protein of unknown function DUF1348; hypothetical protein 1364238 4172301 Patl_1126 Pseudoalteromonas atlantica T6c hypothetical protein YP_660706.1 1363771 R 342610 CDS YP_660707.1 109897452 4172302 complement(1364347..1366482) 1 NC_008228.1 PFAM: ferredoxin oxidoreductase FAD/NAD(P)-binding Oxidoreductase FAD-binding region pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: pfo:Pfl_5689 pyridoxamine 5'-phosphate oxidase-like, FMN-binding; oxidoreductase FAD-binding region 1366482 4172302 Patl_1127 Pseudoalteromonas atlantica T6c oxidoreductase FAD-binding region YP_660707.1 1364347 R 342610 CDS YP_660708.1 109897453 4172303 complement(1366576..1367196) 1 NC_008228.1 PFAM: glutathione S-transferase-like; KEGG: ret:RHE_CH01278 glutathione S-transferase protein; glutathione S-transferase-like protein 1367196 4172303 Patl_1128 Pseudoalteromonas atlantica T6c glutathione S-transferase-like protein YP_660708.1 1366576 R 342610 CDS YP_660709.1 109897454 4172304 1367374..1368270 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: son:SOA0165 transcriptional regulator, LysR family; LysR family transcriptional regulator 1368270 4172304 Patl_1129 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_660709.1 1367374 D 342610 CDS YP_660710.1 109897455 4172305 complement(1368280..1369332) 1 NC_008228.1 PFAM: aminotransferase, class I and II; KEGG: cps:CPS_1142 CobC protein; class I and II aminotransferase 1369332 4172305 Patl_1130 Pseudoalteromonas atlantica T6c class I and II aminotransferase YP_660710.1 1368280 R 342610 CDS YP_660711.1 109897456 4173180 complement(1369472..1370527) 1 NC_008228.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: cps:CPS_1143 putative cobalamin biosynthesis protein D; cobalamin biosynthesis protein CobD 1370527 4173180 Patl_1131 Pseudoalteromonas atlantica T6c cobalamin biosynthesis protein CobD YP_660711.1 1369472 R 342610 CDS YP_660712.1 109897457 4173181 complement(1370550..1371275) 1 NC_008228.1 PFAM: Phosphoglycerate mutase; KEGG: cps:CPS_1144 phosphoglycerate mutase family protein; phosphoglycerate mutase 1371275 4173181 Patl_1132 Pseudoalteromonas atlantica T6c phosphoglycerate mutase YP_660712.1 1370550 R 342610 CDS YP_660713.1 109897458 4173182 complement(1371290..1372339) 1 NC_008228.1 PFAM: periplasmic binding protein; KEGG: cps:CPS_1163 putative vitamin B12 transport protein BtuF; periplasmic binding protein 1372339 4173182 Patl_1133 Pseudoalteromonas atlantica T6c periplasmic binding protein YP_660713.1 1371290 R 342610 CDS YP_660714.1 109897459 4173183 complement(1372339..1372971) 1 NC_008228.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1372971 4173183 Patl_1134 Pseudoalteromonas atlantica T6c cob(I)yrinic acid a,c-diamide adenosyltransferase YP_660714.1 1372339 R 342610 CDS YP_660715.1 109897460 4173184 complement(1372976..1374580) 1 NC_008228.1 TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid a,c-diamide synthase CobB/CobQ-like glutamine amidotransferase; KEGG: vpa:VPA0932 cobyric acid synthase; cobyric acid synthase CobQ 1374580 4173184 Patl_1135 Pseudoalteromonas atlantica T6c cobyric acid synthase CobQ YP_660715.1 1372976 R 342610 CDS YP_660716.1 109897461 4173185 complement(1374577..1375284) 1 NC_008228.1 PFAM: Phosphoglycerate mutase; KEGG: vpa:VP1307 putative alpha-ribazole-5'-phosphate phosphatase CobC; phosphoglycerate mutase 1375284 4173185 Patl_1136 Pseudoalteromonas atlantica T6c phosphoglycerate mutase YP_660716.1 1374577 R 342610 CDS YP_660717.1 109897462 4173186 complement(1375326..1375880) 1 NC_008228.1 PFAM: cobalbumin biosynthesis enzyme; KEGG: cps:CPS_3657 bifunctional cobalamin biosynthesis protein CobP; cobalbumin biosynthesis protein 1375880 4173186 Patl_1137 Pseudoalteromonas atlantica T6c cobalbumin biosynthesis protein YP_660717.1 1375326 R 342610 CDS YP_660718.1 109897463 4173187 complement(1375966..1376775) 1 NC_008228.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: vvy:VV1475 cobalamin-5-phosphate synthase; cobalamin 5'-phosphate synthase 1376775 4173187 Patl_1138 Pseudoalteromonas atlantica T6c cobalamin 5'-phosphate synthase YP_660718.1 1375966 R 342610 CDS YP_660719.1 109897464 4173188 complement(1376811..1377944) 1 NC_008228.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: vpa:VP1304 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase 1377944 4173188 Patl_1139 Pseudoalteromonas atlantica T6c nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_660719.1 1376811 R 342610 CDS YP_660720.1 109897465 4173189 complement(1378183..1379205) 1 NC_008228.1 PFAM: transport system permease protein; KEGG: cps:CPS_1165 putative vitamin B12 transport system permease protein BtuC; transport system permease 1379205 4173189 Patl_1140 Pseudoalteromonas atlantica T6c transport system permease YP_660720.1 1378183 R 342610 CDS YP_660721.1 109897466 4173190 complement(1379202..1380113) 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: cps:CPS_1166 putative vitamin B12 transport ATP-binding protein BtuD; ABC transporter-like protein 1380113 4173190 Patl_1141 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_660721.1 1379202 R 342610 CDS YP_660722.1 109897467 4173192 1380640..1382775 1 NC_008228.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: xcb:XC_2846 iron receptor; TonB-dependent siderophore receptor 1382775 4173192 Patl_1142 Pseudoalteromonas atlantica T6c TonB-dependent siderophore receptor YP_660722.1 1380640 D 342610 CDS YP_660723.1 109897468 4173193 1382922..1384055 1 NC_008228.1 PFAM: PepSY-associated TM helix; KEGG: ilo:IL2512 uncharacterized iron-regulated membrane protein; PepSY-associated TM helix-containing protein 1384055 4173193 Patl_1143 Pseudoalteromonas atlantica T6c PepSY-associated TM helix-containing protein YP_660723.1 1382922 D 342610 CDS YP_660724.1 109897469 4173194 complement(1384191..1384664) 1 NC_008228.1 PFAM: Stress responsive alpha-beta barrel; KEGG: ccr:CC2267 hypothetical protein; stress responsive alpha-beta barrel 1384664 4173194 Patl_1144 Pseudoalteromonas atlantica T6c stress responsive alpha-beta barrel YP_660724.1 1384191 R 342610 CDS YP_660725.1 109897470 4173196 1385553..1385882 1 NC_008228.1 KEGG: pha:PSHAa2270 hypothetical protein; hypothetical protein 1385882 4173196 Patl_1145 Pseudoalteromonas atlantica T6c hypothetical protein YP_660725.1 1385553 D 342610 CDS YP_660726.1 109897471 4173197 complement(1386000..1386665) 1 NC_008228.1 hypothetical protein 1386665 4173197 Patl_1146 Pseudoalteromonas atlantica T6c hypothetical protein YP_660726.1 1386000 R 342610 CDS YP_660727.1 109897472 4173198 1386943..1387257 1 NC_008228.1 KEGG: cps:CPS_4299 hypothetical protein; hypothetical protein 1387257 4173198 Patl_1147 Pseudoalteromonas atlantica T6c hypothetical protein YP_660727.1 1386943 D 342610 CDS YP_660728.1 109897473 4173199 1387527..1390550 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: xcb:XC_4327 Oar protein; TonB-dependent receptor, plug 1390550 4173199 Patl_1148 Pseudoalteromonas atlantica T6c TonB-dependent receptor, plug YP_660728.1 1387527 D 342610 CDS YP_660729.1 109897474 4173200 1390989..1391708 1 NC_008228.1 PFAM: response regulator receiver LytTr DNA-binding region; KEGG: pha:PSHAa1405 response regulator in two-component regulatory system; response regulator receiver protein 1391708 4173200 Patl_1149 Pseudoalteromonas atlantica T6c response regulator receiver protein YP_660729.1 1390989 D 342610 CDS YP_660730.1 109897475 4173201 1391736..1392875 1 NC_008228.1 PFAM: histidine kinase internal region; KEGG: pha:PSHAa1404 hypothetical protein; signal transduction histidine kinase LytS 1392875 4173201 Patl_1150 Pseudoalteromonas atlantica T6c signal transduction histidine kinase LytS YP_660730.1 1391736 D 342610 CDS YP_660731.1 109897476 4173202 1392872..1393702 1 NC_008228.1 PFAM: response regulator receiver LytTr DNA-binding region; KEGG: ilo:IL1261 response regulator of the LytR/AlgR family; response regulator receiver protein 1393702 4173202 Patl_1151 Pseudoalteromonas atlantica T6c response regulator receiver protein YP_660731.1 1392872 D 342610 CDS YP_660732.1 109897477 4173203 1393935..1394897 1 NC_008228.1 KEGG: yps:YPTB3207 glutathione synthetase; TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase-like glutathione synthetase, ATP-binding RimK-like ATP-grasp; glutathione synthetase 1394897 4173203 Patl_1152 Pseudoalteromonas atlantica T6c glutathione synthetase YP_660732.1 1393935 D 342610 CDS YP_660733.1 109897478 4173204 1394887..1395483 1 NC_008228.1 PFAM: protein of unknown function DUF179; KEGG: pha:PSHAa2600 hypothetical protein; hypothetical protein 1395483 4173204 Patl_1153 Pseudoalteromonas atlantica T6c hypothetical protein YP_660733.1 1394887 D 342610 CDS YP_660734.1 109897479 4173205 1395566..1395997 1 NC_008228.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase, RNase H-like fold; KEGG: pha:PSHAa2601 Holliday junction resolvase-like protein; Holliday junction resolvase YqgF 1395997 4173205 Patl_1154 Pseudoalteromonas atlantica T6c Holliday junction resolvase YqgF YP_660734.1 1395566 D 342610 CDS YP_660735.1 109897480 4173206 1396388..1396801 1 NC_008228.1 PFAM: Redoxin Thioredoxin domain; KEGG: cps:CPS_3822 putative thioredoxin; redoxin 1396801 4173206 Patl_1155 Pseudoalteromonas atlantica T6c redoxin YP_660735.1 1396388 D 342610 CDS YP_660736.1 109897481 4173207 1396935..1398164 1 NC_008228.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 1398164 4173207 Patl_1156 Pseudoalteromonas atlantica T6c D-3-phosphoglycerate dehydrogenase YP_660736.1 1396935 D 342610 CDS YP_660737.1 109897482 4173208 complement(1398289..1399035) 1 NC_008228.1 PFAM: helix-turn-helix, AraC type PAS fold-4; KEGG: rba:RB9879 probable transcription regulator; AraC family transcriptional regulator 1399035 4173208 Patl_1157 Pseudoalteromonas atlantica T6c AraC family transcriptional regulator YP_660737.1 1398289 R 342610 CDS YP_660738.1 109897483 4173209 1399774..1400535 1 NC_008228.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: cps:CPS_3701 hypothetical protein; xylose isomerase-like TIM barrel domain-containing protein 1400535 4173209 Patl_1158 Pseudoalteromonas atlantica T6c xylose isomerase-like TIM barrel domain-containing protein YP_660738.1 1399774 D 342610 CDS YP_660739.1 109897484 4173210 complement(1400604..1401227) 1 NC_008228.1 KEGG: hch:HCH_03840 predicted phosphoribosyltransferase; phosphoribosyltransferase 1401227 4173210 Patl_1159 Pseudoalteromonas atlantica T6c phosphoribosyltransferase YP_660739.1 1400604 R 342610 CDS YP_660740.1 109897485 4173211 1401333..1401899 1 NC_008228.1 PFAM: phosphoribosyltransferase; KEGG: hch:HCH_03840 predicted phosphoribosyltransferase; phosphoribosyltransferase 1401899 4173211 Patl_1160 Pseudoalteromonas atlantica T6c phosphoribosyltransferase YP_660740.1 1401333 D 342610 CDS YP_660741.1 109897486 4173212 complement(1402021..1402713) 1 NC_008228.1 PFAM: protein of unknown function DUF480; KEGG: son:SO1867 hypothetical protein; hypothetical protein 1402713 4173212 Patl_1161 Pseudoalteromonas atlantica T6c hypothetical protein YP_660741.1 1402021 R 342610 CDS YP_660742.1 109897487 4173213 1402816..1403736 1 NC_008228.1 PFAM: histone deacetylase superfamily; KEGG: cps:CPS_3373 histone deacetylase family protein; histone deacetylase superfamily protein 1403736 4173213 Patl_1162 Pseudoalteromonas atlantica T6c histone deacetylase superfamily protein YP_660742.1 1402816 D 342610 CDS YP_660743.1 109897488 4173214 complement(1403750..1403920) 1 NC_008228.1 KEGG: pha:PSHAa1267 hypothetical protein; hypothetical protein 1403920 4173214 Patl_1163 Pseudoalteromonas atlantica T6c hypothetical protein YP_660743.1 1403750 R 342610 CDS YP_660744.1 109897489 4173215 complement(1404126..1404761) 1 NC_008228.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: ade:Adeh_3603 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 1404761 4173215 Patl_1164 Pseudoalteromonas atlantica T6c cyclophilin type peptidyl-prolyl cis-trans isomerase YP_660744.1 1404126 R 342610 CDS YP_660745.1 109897490 4173216 complement(1404989..1405546) 1 NC_008228.1 KEGG: ppr:PBPRB0391 conserved hypothetical protein; hypothetical protein 1405546 4173216 Patl_1165 Pseudoalteromonas atlantica T6c hypothetical protein YP_660745.1 1404989 R 342610 CDS YP_660746.1 109897491 4172572 1405719..1407476 1 NC_008228.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N sodium/hydrogen exchanger; KEGG: son:SO1481 glutathione-regulated potassium-efflux system protein; potassium efflux system protein 1407476 4172572 Patl_1166 Pseudoalteromonas atlantica T6c potassium efflux system protein YP_660746.1 1405719 D 342610 CDS YP_660747.1 109897492 4172573 complement(1407480..1409090) 1 NC_008228.1 KEGG: cps:CPS_5028 hypothetical protein; hypothetical protein 1409090 4172573 Patl_1167 Pseudoalteromonas atlantica T6c hypothetical protein YP_660747.1 1407480 R 342610 CDS YP_660748.1 109897493 4172574 complement(1409090..1409989) 1 NC_008228.1 KEGG: cps:CPS_5027 putative exopolysaccharide biosynthesis protein; protein-tyrosine kinase 1409989 4172574 Patl_1168 Pseudoalteromonas atlantica T6c protein-tyrosine kinase YP_660748.1 1409090 R 342610 CDS YP_660749.1 109897494 4172575 complement(1409986..1411569) 1 NC_008228.1 PFAM: lipopolysaccharide biosynthesis; KEGG: cps:CPS_5026 chain length determinant family protein; lipopolysaccharide biosynthesis protein 1411569 4172575 Patl_1169 Pseudoalteromonas atlantica T6c lipopolysaccharide biosynthesis protein YP_660749.1 1409986 R 342610 CDS YP_660750.1 109897495 4172576 complement(1411599..1412234) 1 NC_008228.1 PFAM: polysaccharide export protein; KEGG: cps:CPS_5025 polysaccharide biosynthesis/export protein; polysaccharide export protein 1412234 4172576 Patl_1170 Pseudoalteromonas atlantica T6c polysaccharide export protein YP_660750.1 1411599 R 342610 CDS YP_660751.1 109897496 4172577 1412408..1413820 1 NC_008228.1 PFAM: sugar transferase; KEGG: cps:CPS_5023 bacterial sugar transferase domain protein; sugar transferase 1413820 4172577 Patl_1171 Pseudoalteromonas atlantica T6c sugar transferase YP_660751.1 1412408 D 342610 CDS YP_660752.1 109897497 4172578 1413823..1414668 1 NC_008228.1 PFAM: polysaccharide deacetylase; KEGG: eba:ebA4258 polysaccharide deacetylase; polysaccharide deacetylase 1414668 4172578 Patl_1172 Pseudoalteromonas atlantica T6c polysaccharide deacetylase YP_660752.1 1413823 D 342610 CDS YP_660753.1 109897498 4172579 1414690..1416183 1 NC_008228.1 TIGRFAM: eight transmembrane protein EpsH; KEGG: neu:NE1797 hypothetical protein; transmembrane protein EpsH 1416183 4172579 Patl_1173 Pseudoalteromonas atlantica T6c transmembrane protein EpsH YP_660753.1 1414690 D 342610 CDS YP_660754.1 109897499 4172580 1416195..1417094 1 NC_008228.1 TIGRFAM: methyltransferase FkbM family; KEGG: sso:SSO1901 hypothetical protein; FkbM family methyltransferase 1417094 4172580 Patl_1174 Pseudoalteromonas atlantica T6c FkbM family methyltransferase YP_660754.1 1416195 D 342610 CDS YP_660755.1 109897500 4172581 1417112..1418128 1 NC_008228.1 PFAM: acyltransferase 3; KEGG: cps:CPS_5002 acyltransferase family protein; acyltransferase 3 1418128 4172581 Patl_1175 Pseudoalteromonas atlantica T6c acyltransferase 3 YP_660755.1 1417112 D 342610 CDS YP_660756.1 109897501 4172582 complement(1418164..1419297) 1 NC_008228.1 hypothetical protein 1419297 4172582 Patl_1176 Pseudoalteromonas atlantica T6c hypothetical protein YP_660756.1 1418164 R 342610 CDS YP_660757.1 109897502 4172583 complement(1419326..1419907) 1 NC_008228.1 KEGG: dvu:DVUA0053 hypothetical protein; hypothetical protein 1419907 4172583 Patl_1177 Pseudoalteromonas atlantica T6c hypothetical protein YP_660757.1 1419326 R 342610 CDS YP_660758.1 109897503 4172584 complement(1419904..1421034) 1 NC_008228.1 PFAM: glycosyl transferase, group 1; KEGG: dar:Daro_2405 glycosyl transferase, group 1; group 1 glycosyl transferase 1421034 4172584 Patl_1178 Pseudoalteromonas atlantica T6c group 1 glycosyl transferase YP_660758.1 1419904 R 342610 CDS YP_660759.1 109897504 4172585 1421533..1422459 1 NC_008228.1 PFAM: glycosyl transferase, family 2; KEGG: rru:Rru_A0938 glycosyl transferase, family 2; glycosyl transferase family protein 1422459 4172585 Patl_1179 Pseudoalteromonas atlantica T6c glycosyl transferase family protein YP_660759.1 1421533 D 342610 CDS YP_660760.1 109897505 4172586 1422592..1423407 1 NC_008228.1 PFAM: sulfotransferase; KEGG: hch:HCH_06158 putative sulfotransferase protein; sulfotransferase 1423407 4172586 Patl_1180 Pseudoalteromonas atlantica T6c sulfotransferase YP_660760.1 1422592 D 342610 CDS YP_660761.1 109897506 4172587 1423440..1424645 1 NC_008228.1 hypothetical protein 1424645 4172587 Patl_1181 Pseudoalteromonas atlantica T6c hypothetical protein YP_660761.1 1423440 D 342610 CDS YP_660762.1 109897507 4172588 complement(1424638..1424982) 1 NC_008228.1 hypothetical protein 1424982 4172588 Patl_1182 Pseudoalteromonas atlantica T6c hypothetical protein YP_660762.1 1424638 R 342610 CDS YP_660763.1 109897508 4172589 complement(1424979..1426571) 1 NC_008228.1 KEGG: jan:Jann_4268 FAD dependent oxidoreductase; choline dehydrogenase-like flavoprotein 1426571 4172589 Patl_1183 Pseudoalteromonas atlantica T6c choline dehydrogenase-like flavoprotein YP_660763.1 1424979 R 342610 CDS YP_660764.1 109897509 4172590 complement(1426568..1427806) 1 NC_008228.1 PFAM: O-antigen polymerase; KEGG: vpa:VP1464 putative membrane protein of ExoQ family, involved in exopolysaccharide production; O-antigen polymerase 1427806 4172590 Patl_1184 Pseudoalteromonas atlantica T6c O-antigen polymerase YP_660764.1 1426568 R 342610 CDS YP_660765.1 109897510 4172591 complement(1427974..1429032) 1 NC_008228.1 PFAM: acyltransferase 3; KEGG: cps:CPS_5002 acyltransferase family protein; acyltransferase 3 1429032 4172591 Patl_1185 Pseudoalteromonas atlantica T6c acyltransferase 3 YP_660765.1 1427974 R 342610 CDS YP_660766.1 109897511 4172592 complement(1429176..1430093) 1 NC_008228.1 PFAM: glycosyl transferase, family 2; KEGG: pfu:PF1359 glycosyl transferase; glycosyl transferase family protein 1430093 4172592 Patl_1186 Pseudoalteromonas atlantica T6c glycosyl transferase family protein YP_660766.1 1429176 R 342610 CDS YP_660767.1 109897512 4172593 complement(1430096..1431562) 1 NC_008228.1 PFAM: polysaccharide biosynthesis protein; KEGG: noc:Noc_1942 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 1431562 4172593 Patl_1187 Pseudoalteromonas atlantica T6c polysaccharide biosynthesis protein YP_660767.1 1430096 R 342610 CDS YP_660768.1 109897513 4172594 complement(1431559..1432641) 1 NC_008228.1 PFAM: glycosyl transferase, group 1; KEGG: xoo:XOO3172 GumI; group 1 glycosyl transferase 1432641 4172594 Patl_1188 Pseudoalteromonas atlantica T6c group 1 glycosyl transferase YP_660768.1 1431559 R 342610 CDS YP_660769.1 109897514 4172595 complement(1432685..1434565) 1 NC_008228.1 hypothetical protein 1434565 4172595 Patl_1189 Pseudoalteromonas atlantica T6c hypothetical protein YP_660769.1 1432685 R 342610 CDS YP_660770.1 109897515 4172596 complement(1434660..1436132) 1 NC_008228.1 PFAM: polysaccharide biosynthesis protein; KEGG: ret:RHE_CH03216 exopolysaccharide polymerization and/or export protein; polysaccharide biosynthesis protein 1436132 4172596 Patl_1190 Pseudoalteromonas atlantica T6c polysaccharide biosynthesis protein YP_660770.1 1434660 R 342610 CDS YP_660771.1 109897516 4172597 complement(1436158..1437312) 1 NC_008228.1 PFAM: glycosyl transferase, group 1; KEGG: tbd:Tbd_0302 glycosyltransferase; group 1 glycosyl transferase 1437312 4172597 Patl_1191 Pseudoalteromonas atlantica T6c group 1 glycosyl transferase YP_660771.1 1436158 R 342610 CDS YP_660772.1 109897517 4172598 complement(1437309..1438358) 1 NC_008228.1 KEGG: noc:Noc_0749 hypothetical protein; hypothetical protein 1438358 4172598 Patl_1192 Pseudoalteromonas atlantica T6c hypothetical protein YP_660772.1 1437309 R 342610 CDS YP_660773.1 109897518 4172599 complement(1438362..1439477) 1 NC_008228.1 PFAM: glycosyl transferase, group 1; KEGG: neu:NE1796 glycosyl transferase group 1; group 1 glycosyl transferase 1439477 4172599 Patl_1193 Pseudoalteromonas atlantica T6c group 1 glycosyl transferase YP_660773.1 1438362 R 342610 CDS YP_660774.1 109897519 4172600 complement(1439491..1441395) 1 NC_008228.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II asparagine synthase; KEGG: neu:NE1795 glutamine amidotransferase class-II:asparagine synthase; asparagine synthase 1441395 4172600 Patl_1194 Pseudoalteromonas atlantica T6c asparagine synthase YP_660774.1 1439491 R 342610 CDS YP_660775.1 109897520 4172601 complement(1441469..1442536) 1 NC_008228.1 KEGG: hch:HCH_02721 hypothetical protein; hypothetical protein 1442536 4172601 Patl_1195 Pseudoalteromonas atlantica T6c hypothetical protein YP_660775.1 1441469 R 342610 CDS YP_660776.1 109897521 4172602 complement(1442533..1443540) 1 NC_008228.1 KEGG: nar:Saro_1349 hypothetical protein; hypothetical protein 1443540 4172602 Patl_1196 Pseudoalteromonas atlantica T6c hypothetical protein YP_660776.1 1442533 R 342610 CDS YP_660777.1 109897522 4172603 complement(1443540..1444664) 1 NC_008228.1 PFAM: glycosyl transferase, group 1; KEGG: gme:Gmet_2001 glycosyl transferase, group 1; group 1 glycosyl transferase 1444664 4172603 Patl_1197 Pseudoalteromonas atlantica T6c group 1 glycosyl transferase YP_660777.1 1443540 R 342610 CDS YP_660778.1 109897523 4172604 complement(1444668..1445624) 1 NC_008228.1 PFAM: glycosyl transferase, family 2; KEGG: pfo:Pfl_2017 glycosyl transferase, family 2; glycosyl transferase family protein 1445624 4172604 Patl_1198 Pseudoalteromonas atlantica T6c glycosyl transferase family protein YP_660778.1 1444668 R 342610 CDS YP_660779.1 109897524 4172605 complement(1445655..1448267) 1 NC_008228.1 hypothetical protein 1448267 4172605 Patl_1199 Pseudoalteromonas atlantica T6c hypothetical protein YP_660779.1 1445655 R 342610 CDS YP_660780.1 109897525 4172606 complement(1448275..1449411) 1 NC_008228.1 KEGG: cps:CPS_5003 hypothetical protein; hypothetical protein 1449411 4172606 Patl_1200 Pseudoalteromonas atlantica T6c hypothetical protein YP_660780.1 1448275 R 342610 CDS YP_660781.1 109897526 4172607 complement(1449448..1452204) 1 NC_008228.1 PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: cps:CPS_0310 TPR domain protein; hypothetical protein 1452204 4172607 Patl_1201 Pseudoalteromonas atlantica T6c hypothetical protein YP_660781.1 1449448 R 342610 CDS YP_660782.1 109897527 4172608 complement(1452356..1453984) 1 NC_008228.1 PFAM: FAD linked oxidase-like; KEGG: cps:CPS_4397 FAD-binding protein; 4-cresol dehydrogenase 1453984 4172608 Patl_1202 Pseudoalteromonas atlantica T6c 4-cresol dehydrogenase YP_660782.1 1452356 R 342610 CDS YP_660783.1 109897528 4172609 complement(1454211..1455047) 1 NC_008228.1 hypothetical protein 1455047 4172609 Patl_1203 Pseudoalteromonas atlantica T6c hypothetical protein YP_660783.1 1454211 R 342610 CDS YP_660784.1 109897529 4172610 complement(1455424..1456233) 1 NC_008228.1 KEGG: cps:CPS_4396 hypothetical protein; hypothetical protein 1456233 4172610 Patl_1204 Pseudoalteromonas atlantica T6c hypothetical protein YP_660784.1 1455424 R 342610 CDS YP_660785.1 109897530 4172671 complement(1456265..1457104) 1 NC_008228.1 PFAM: Patatin; KEGG: gsu:GSU0310 hypothetical protein; patatin 1457104 4172671 Patl_1205 Pseudoalteromonas atlantica T6c patatin YP_660785.1 1456265 R 342610 CDS YP_660786.1 109897531 4172672 complement(1457196..1457951) 1 NC_008228.1 PFAM: protein of unknown function DUF218; KEGG: cps:CPS_2002 hypothetical protein; hypothetical protein 1457951 4172672 Patl_1206 Pseudoalteromonas atlantica T6c hypothetical protein YP_660786.1 1457196 R 342610 CDS YP_660787.1 109897532 4172673 complement(1458025..1458195) 1 NC_008228.1 KEGG: eba:ebA1639 predicted nucleoside-diphosphate-sugar epimerase; hypothetical protein 1458195 4172673 Patl_1207 Pseudoalteromonas atlantica T6c hypothetical protein YP_660787.1 1458025 R 342610 CDS YP_660788.1 109897533 4172674 1458307..1459089 1 NC_008228.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: cps:CPS_4394 serine protease; peptidase S1 and S6, chymotrypsin/Hap 1459089 4172674 Patl_1208 Pseudoalteromonas atlantica T6c peptidase S1 and S6, chymotrypsin/Hap YP_660788.1 1458307 D 342610 CDS YP_660789.1 109897534 4172675 1459233..1459775 1 NC_008228.1 hypothetical protein 1459775 4172675 Patl_1209 Pseudoalteromonas atlantica T6c hypothetical protein YP_660789.1 1459233 D 342610 CDS YP_660790.1 109897535 4172676 1459776..1460060 1 NC_008228.1 hypothetical protein 1460060 4172676 Patl_1210 Pseudoalteromonas atlantica T6c hypothetical protein YP_660790.1 1459776 D 342610 CDS YP_660791.1 109897536 4172677 1460050..1460961 1 NC_008228.1 KEGG: tbd:Tbd_2497 HPr kinase; HPr kinase 1460961 4172677 Patl_1211 Pseudoalteromonas atlantica T6c HPr kinase YP_660791.1 1460050 D 342610 CDS YP_660792.1 109897537 4172678 1460958..1462094 1 NC_008228.1 KEGG: tbd:Tbd_2498 hypothetical protein; hypothetical protein 1462094 4172678 Patl_1212 Pseudoalteromonas atlantica T6c hypothetical protein YP_660792.1 1460958 D 342610 CDS YP_660793.1 109897538 4172679 complement(1462116..1464290) 1 NC_008228.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 1464290 4172679 Patl_1213 Pseudoalteromonas atlantica T6c malate synthase G YP_660793.1 1462116 R 342610 CDS YP_660794.1 109897539 4172680 complement(1464389..1465333) 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pha:PSHAa1822 transcriptional regulator; LysR family transcriptional regulator 1465333 4172680 Patl_1214 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_660794.1 1464389 R 342610 CDS YP_660795.1 109897540 4172681 complement(1465597..1467198) 1 NC_008228.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 1467198 4172681 Patl_1215 Pseudoalteromonas atlantica T6c isocitrate lyase YP_660795.1 1465597 R 342610 CDS YP_660796.1 109897541 4172682 1467633..1468922 1 NC_008228.1 PFAM: Alkaline phosphatase; KEGG: cps:CPS_1963 alkaline phosphatase; alkaline phosphatase 1468922 4172682 Patl_1216 Pseudoalteromonas atlantica T6c alkaline phosphatase YP_660796.1 1467633 D 342610 CDS YP_660797.1 109897542 4172683 complement(1469091..1469789) 1 NC_008228.1 KEGG: vch:VC0807 hypothetical protein; hypothetical protein 1469789 4172683 Patl_1217 Pseudoalteromonas atlantica T6c hypothetical protein YP_660797.1 1469091 R 342610 CDS YP_660798.1 109897543 4172684 complement(1469905..1470483) 1 NC_008228.1 PFAM: Rhomboid-like protein; KEGG: pha:PSHAa2191 rhomboid protein; rhomboid-like protein 1470483 4172684 Patl_1218 Pseudoalteromonas atlantica T6c rhomboid-like protein YP_660798.1 1469905 R 342610 CDS YP_660799.1 109897544 4172685 complement(1470551..1471714) 1 NC_008228.1 PFAM: glutathionylspermidine synthase; KEGG: hch:HCH_06602 glutathionylspermidine synthase; glutathionylspermidine synthase 1471714 4172685 Patl_1219 Pseudoalteromonas atlantica T6c glutathionylspermidine synthase YP_660799.1 1470551 R 342610 CDS YP_660800.1 109897545 4172686 complement(1471723..1472337) 1 NC_008228.1 KEGG: ppr:PBPRB0051 hypothetical integral membrane protein; hypothetical protein 1472337 4172686 Patl_1220 Pseudoalteromonas atlantica T6c hypothetical protein YP_660800.1 1471723 R 342610 CDS YP_660801.1 109897546 4172687 complement(1472346..1472762) 1 NC_008228.1 PFAM: protein of unknown function DUF350; KEGG: hch:HCH_06600 predicted membrane protein; hypothetical protein 1472762 4172687 Patl_1221 Pseudoalteromonas atlantica T6c hypothetical protein YP_660801.1 1472346 R 342610 CDS YP_660802.1 109897547 4172688 complement(1472789..1473436) 1 NC_008228.1 KEGG: hch:HCH_06599 hypothetical protein; hypothetical protein 1473436 4172688 Patl_1222 Pseudoalteromonas atlantica T6c hypothetical protein YP_660802.1 1472789 R 342610 CDS YP_660803.1 109897548 4172689 complement(1473438..1474487) 1 NC_008228.1 PFAM: Ion transport 2; KEGG: hch:HCH_06598 Kef-type K+ transport system, predicted NAD-binding component; Ion transport 2 1474487 4172689 Patl_1223 Pseudoalteromonas atlantica T6c Ion transport 2 YP_660803.1 1473438 R 342610 CDS YP_660804.1 109897549 4172690 complement(1474665..1475345) 1 NC_008228.1 PFAM: PspA/IM30; KEGG: hch:HCH_06597 phage shock protein A (IM30), suppresses sigma54-dependent transcription; phage shock protein A, PspA 1475345 4172690 Patl_1224 Pseudoalteromonas atlantica T6c phage shock protein A, PspA YP_660804.1 1474665 R 342610 CDS YP_660805.1 109897550 4172691 complement(1475361..1475750) 1 NC_008228.1 KEGG: hch:HCH_06595 hypothetical protein; hypothetical protein 1475750 4172691 Patl_1225 Pseudoalteromonas atlantica T6c hypothetical protein YP_660805.1 1475361 R 342610 CDS YP_660806.1 109897551 4172692 1475937..1476245 1 NC_008228.1 KEGG: hch:HCH_06594 hypothetical protein; hypothetical protein 1476245 4172692 Patl_1226 Pseudoalteromonas atlantica T6c hypothetical protein YP_660806.1 1475937 D 342610 CDS YP_660807.1 109897552 4172693 1476482..1477522 1 NC_008228.1 TIGRFAM: S-adenosylmethionine--tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: son:SO3114 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; S-adenosylmethionine--tRNA-ribosyltransferase- isomerase 1477522 4172693 Patl_1227 Pseudoalteromonas atlantica T6c S-adenosylmethionine--tRNA-ribosyltransferase- isomerase YP_660807.1 1476482 D 342610 CDS YP_660808.1 109897553 4172694 1477703..1478815 1 NC_008228.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1478815 tgt 4172694 tgt Pseudoalteromonas atlantica T6c queuine tRNA-ribosyltransferase YP_660808.1 1477703 D 342610 CDS YP_660809.1 109897554 4172695 1478846..1479184 1 NC_008228.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1479184 yajC 4172695 yajC Pseudoalteromonas atlantica T6c preprotein translocase subunit YajC YP_660809.1 1478846 D 342610 CDS YP_660810.1 109897555 4172696 1479262..1481106 1 NC_008228.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1481106 secD 4172696 secD Pseudoalteromonas atlantica T6c preprotein translocase subunit SecD YP_660810.1 1479262 D 342610 CDS YP_660811.1 109897556 4172697 1481117..1482058 1 NC_008228.1 TIGRFAM: protein-export membrane protein, SecD/SecF family protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: cps:CPS_1123 protein-export membrane protein SecF; protein-export membrane protein SecF 1482058 4172697 Patl_1231 Pseudoalteromonas atlantica T6c protein-export membrane protein SecF YP_660811.1 1481117 D 342610 CDS YP_660812.1 109897557 4172698 complement(1482323..1483102) 1 NC_008228.1 PFAM: inositol monophosphatase; KEGG: cps:CPS_1128 inositol-1-monophosphatase; inositol-1(or 4)-monophosphatase 1483102 4172698 Patl_1232 Pseudoalteromonas atlantica T6c inositol-1(or 4)-monophosphatase YP_660812.1 1482323 R 342610 CDS YP_660813.1 109897558 4172699 1483339..1483722 1 NC_008228.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vch:VCA0890 glyoxylase I family protein; glyoxalase/bleomycin resistance protein/dioxygenase 1483722 4172699 Patl_1233 Pseudoalteromonas atlantica T6c glyoxalase/bleomycin resistance protein/dioxygenase YP_660813.1 1483339 D 342610 CDS YP_660814.1 109897559 4172700 1483756..1484073 1 NC_008228.1 hypothetical protein 1484073 4172700 Patl_1234 Pseudoalteromonas atlantica T6c hypothetical protein YP_660814.1 1483756 D 342610 CDS YP_660815.1 109897560 4172701 1484105..1484830 1 NC_008228.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pha:PSHAa2673 tRNA/rRNA methyltransferase; RNA methyltransferase 1484830 4172701 Patl_1235 Pseudoalteromonas atlantica T6c RNA methyltransferase YP_660815.1 1484105 D 342610 CDS YP_660816.1 109897561 4172702 1484833..1485636 1 NC_008228.1 TIGRFAM: serine O-acetyltransferase; KEGG: cps:CPS_1130 serine O-acetyltransferase; serine O-acetyltransferase 1485636 4172702 Patl_1236 Pseudoalteromonas atlantica T6c serine O-acetyltransferase YP_660816.1 1484833 D 342610 CDS YP_660817.1 109897562 4172703 1485762..1486247 1 NC_008228.1 TIGRFAM: putative transcriptional regulator, Rrf2 family iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: vfi:VF0616 Rrf2 family protein; BadM/Rrf2 family transcriptional regulator 1486247 4172703 Patl_1237 Pseudoalteromonas atlantica T6c BadM/Rrf2 family transcriptional regulator YP_660817.1 1485762 D 342610 CDS YP_660818.1 109897563 4172704 1486264..1487487 1 NC_008228.1 TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase, class V aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ppr:PBPRA0750 putative aminotransferase NifS, class V; cysteine desulfurase IscS 1487487 4172704 Patl_1238 Pseudoalteromonas atlantica T6c cysteine desulfurase IscS YP_660818.1 1486264 D 342610 CDS YP_660819.1 109897564 4172705 1487551..1487931 1 NC_008228.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU-like-like; KEGG: son:SO2265 NifU family protein; scaffold protein 1487931 4172705 Patl_1239 Pseudoalteromonas atlantica T6c scaffold protein YP_660819.1 1487551 D 342610 CDS YP_660820.1 109897565 4172706 1487957..1488280 1 NC_008228.1 TIGRFAM: iron-sulfur cluster assembly accessory protein iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF; KEGG: eca:ECA3235 iron-sulfur cluster assembly protein; iron-sulfur cluster assembly protein IscA 1488280 4172706 Patl_1240 Pseudoalteromonas atlantica T6c iron-sulfur cluster assembly protein IscA YP_660820.1 1487957 D 342610 CDS YP_660821.1 109897566 4172707 1488415..1488942 1 NC_008228.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 1488942 hscB 4172707 hscB Pseudoalteromonas atlantica T6c co-chaperone HscB YP_660821.1 1488415 D 342610 CDS YP_660822.1 109897567 4172708 1488963..1490831 1 NC_008228.1 TIGRFAM: Fe-S protein assembly chaperone HscA; PFAM: Heat shock protein 70; KEGG: sdy:SDY_2722 HscA; Fe-S protein assembly chaperone HscA 1490831 4172708 Patl_1242 Pseudoalteromonas atlantica T6c Fe-S protein assembly chaperone HscA YP_660822.1 1488963 D 342610 CDS YP_660823.1 109897568 4172709 1490878..1491216 1 NC_008228.1 TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: pha:PSHAa2666 [2Fe-2S] ferredoxin, electron carrier protein, involved in assembly of Fe-S clusters; ferredoxin, 2Fe-2S type, ISC system 1491216 4172709 Patl_1243 Pseudoalteromonas atlantica T6c ferredoxin, 2Fe-2S type, ISC system YP_660823.1 1490878 D 342610 CDS YP_660824.1 109897569 4173255 1491355..1491645 1 NC_008228.1 KEGG: son:SO2604 hypothetical protein; hypothetical protein 1491645 4173255 Patl_1244 Pseudoalteromonas atlantica T6c hypothetical protein YP_660824.1 1491355 D 342610 CDS YP_660825.1 109897570 4173256 complement(1491804..1493579) 1 NC_008228.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO1238 acyltransferase family protein; phospholipid/glycerol acyltransferase 1493579 4173256 Patl_1245 Pseudoalteromonas atlantica T6c phospholipid/glycerol acyltransferase YP_660825.1 1491804 R 342610 CDS YP_660826.1 109897571 4173257 complement(1493690..1494508) 1 NC_008228.1 PFAM: metallophosphoesterase; KEGG: reu:Reut_A0941 metallophosphoesterase; metallophosphoesterase 1494508 4173257 Patl_1246 Pseudoalteromonas atlantica T6c metallophosphoesterase YP_660826.1 1493690 R 342610 CDS YP_660827.1 109897572 4173258 complement(1494644..1497256) 1 NC_008228.1 KEGG: son:SO1626 protein-P-II uridylyltransferase; TIGRFAM: protein-P-II uridylyltransferase; PFAM: amino acid-binding ACT DNA polymerase, beta-like region metal-dependent phosphohydrolase, HD subdomain GlnD PII-uridylyltransferase; SMART: Metal-dependent phosphohydrolase, HD region; UTP-GlnB uridylyltransferase, GlnD 1497256 4173258 Patl_1247 Pseudoalteromonas atlantica T6c UTP-GlnB uridylyltransferase, GlnD YP_660827.1 1494644 R 342610 CDS YP_660828.1 109897573 4173259 complement(1497404..1498195) 1 NC_008228.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: pha:PSHAa2037 methionine aminopeptidase; contains a divalent metal, usually cobalt; methionine aminopeptidase 1498195 4173259 Patl_1248 Pseudoalteromonas atlantica T6c methionine aminopeptidase YP_660828.1 1497404 R 342610 CDS YP_660829.1 109897574 4173260 1498507..1499238 1 NC_008228.1 PFAM: ribosomal protein S2; KEGG: pha:PSHAa2036 30S ribosomal subunit protein S2; 30S ribosomal protein S2 1499238 4173260 Patl_1249 Pseudoalteromonas atlantica T6c 30S ribosomal protein S2 YP_660829.1 1498507 D 342610 CDS YP_660830.1 109897575 4173261 1499371..1500243 1 NC_008228.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1500243 tsf 4173261 tsf Pseudoalteromonas atlantica T6c elongation factor Ts YP_660830.1 1499371 D 342610 CDS YP_660831.1 109897576 4173262 1500511..1501254 1 NC_008228.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1501254 pyrH 4173262 pyrH Pseudoalteromonas atlantica T6c uridylate kinase YP_660831.1 1500511 D 342610 CDS YP_660832.1 109897577 4173263 1501270..1501827 1 NC_008228.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1501827 frr 4173263 frr Pseudoalteromonas atlantica T6c ribosome recycling factor YP_660832.1 1501270 D 342610 CDS YP_660833.1 109897578 4173264 1501842..1502582 1 NC_008228.1 KEGG: vpa:VP2314 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 1502582 4173264 Patl_1253 Pseudoalteromonas atlantica T6c undecaprenyl diphosphate synthase YP_660833.1 1501842 D 342610 CDS YP_660834.1 109897579 4173265 1502632..1503495 1 NC_008228.1 PFAM: phosphatidate cytidylyltransferase; KEGG: ilo:IL0840 CDP-diglyceride synthetase; phosphatidate cytidylyltransferase 1503495 4173265 Patl_1254 Pseudoalteromonas atlantica T6c phosphatidate cytidylyltransferase YP_660834.1 1502632 D 342610 CDS YP_660835.1 109897580 4173266 1503495..1504688 1 NC_008228.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1504688 4173266 Patl_1255 Pseudoalteromonas atlantica T6c 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_660835.1 1503495 D 342610 CDS YP_660836.1 109897581 4173267 1504688..1506040 1 NC_008228.1 KEGG: cps:CPS_1560 membrane-associated zinc metalloprotease EcfE; TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF; putative membrane-associated zinc metalloprotease 1506040 4173267 Patl_1256 Pseudoalteromonas atlantica T6c putative membrane-associated zinc metalloprotease YP_660836.1 1504688 D 342610 CDS YP_660837.1 109897582 4173268 1506102..1508576 1 NC_008228.1 PFAM: surface antigen (D15) surface antigen variable number; KEGG: cps:CPS_1561 outer membrane protein, OMP85 family; surface antigen (D15) 1508576 4173268 Patl_1257 Pseudoalteromonas atlantica T6c surface antigen (D15) YP_660837.1 1506102 D 342610 CDS YP_660838.1 109897583 4173269 1508631..1509146 1 NC_008228.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: cps:CPS_1562 outer membrane protein, OmpH family; Outer membrane chaperone Skp 1509146 4173269 Patl_1258 Pseudoalteromonas atlantica T6c Outer membrane chaperone Skp YP_660838.1 1508631 D 342610 CDS YP_660839.1 109897584 4173270 1509189..1510223 1 NC_008228.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; KEGG: eca:ECA1041 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 1510223 4173270 Patl_1259 Pseudoalteromonas atlantica T6c UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase YP_660839.1 1509189 D 342610 CDS YP_660840.1 109897585 4173271 1510265..1510711 1 NC_008228.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1510711 fabZ 4173271 fabZ Pseudoalteromonas atlantica T6c (3R)-hydroxymyristoyl-ACP dehydratase YP_660840.1 1510265 D 342610 CDS YP_660841.1 109897586 4173272 1510713..1511483 1 NC_008228.1 TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: cps:CPS_1565 UDP-N-acetylglucosamine acyltransferase; acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase 1511483 4173272 Patl_1261 Pseudoalteromonas atlantica T6c acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase YP_660841.1 1510713 D 342610 CDS YP_660842.1 109897587 4173273 1511487..1512653 1 NC_008228.1 KEGG: pha:PSHAa2017 tetraacyldisaccharide-1-P synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase, family 19; lipid-A-disaccharide synthase 1512653 4173273 Patl_1262 Pseudoalteromonas atlantica T6c lipid-A-disaccharide synthase YP_660842.1 1511487 D 342610 CDS YP_660843.1 109897588 4173274 1512654..1513247 1 NC_008228.1 PFAM: ribonuclease HII/HIII; KEGG: pha:PSHAa2016 RNAse HII; ribonuclease H 1513247 4173274 Patl_1263 Pseudoalteromonas atlantica T6c ribonuclease H YP_660843.1 1512654 D 342610 CDS YP_660844.1 109897589 4173275 1513248..1516715 1 NC_008228.1 KEGG: pha:PSHAa2015 DNA polymerase III subunit alpha; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP-like nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: Phosphoesterase PHP-like; DNA polymerase III subunit alpha 1516715 4173275 Patl_1264 Pseudoalteromonas atlantica T6c DNA polymerase III subunit alpha YP_660844.1 1513248 D 342610 CDS YP_660845.1 109897590 4173276 1516764..1517720 1 NC_008228.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1517720 4173276 Patl_1265 Pseudoalteromonas atlantica T6c acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_660845.1 1516764 D 342610 CDS YP_660846.1 109897591 4173277 1517817..1519211 1 NC_008228.1 TIGRFAM: tRNA(Ile)-lysidine synthetase tRNA(Ile)-lysidine synthetase-like; PFAM: PP-loop; KEGG: sdy:SDY_0206 cell cycle protein; tRNA(Ile)-lysidine synthetase 1519211 4173277 Patl_1266 Pseudoalteromonas atlantica T6c tRNA(Ile)-lysidine synthetase YP_660846.1 1517817 D 342610 CDS YP_660847.1 109897592 4173278 1519371..1520156 1 NC_008228.1 PFAM: lipase, class 3; KEGG: vpa:VPA0997 lipase-related protein; lipase, class 3 1520156 4173278 Patl_1267 Pseudoalteromonas atlantica T6c lipase, class 3 YP_660847.1 1519371 D 342610 CDS YP_660848.1 109897593 4173279 complement(1520383..1521924) 1 NC_008228.1 PFAM: Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: pha:PSHAa1088 TPR motives; response regulator receiver protein 1521924 4173279 Patl_1268 Pseudoalteromonas atlantica T6c response regulator receiver protein YP_660848.1 1520383 R 342610 CDS YP_660849.1 109897594 4173280 complement(1522222..1523085) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: ppr:PBPRA2946 hypothetical protein; diguanylate cyclase 1523085 4173280 Patl_1269 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_660849.1 1522222 R 342610 CDS YP_660850.1 109897595 4173281 1523214..1525187 1 NC_008228.1 PFAM: TrkA-N TrkA-C sodium/hydrogen exchanger; KEGG: ilo:IL1685 Kef-type K+ transport system, membrane component; sodium/hydrogen exchanger 1525187 4173281 Patl_1270 Pseudoalteromonas atlantica T6c sodium/hydrogen exchanger YP_660850.1 1523214 D 342610 CDS YP_660851.1 109897596 4173282 1525296..1527098 1 NC_008228.1 PFAM: carboxyl transferase biotin/lipoyl attachment; KEGG: ccr:CC3214 carbamoyl-phosphate synthase/carboxyl transferase; propionyl-CoA carboxylase 1527098 4173282 Patl_1271 Pseudoalteromonas atlantica T6c propionyl-CoA carboxylase YP_660851.1 1525296 D 342610 CDS YP_660852.1 109897597 4173283 1527170..1528222 1 NC_008228.1 PFAM: helix-turn-helix, AraC type transcription activator, effector binding; KEGG: mca:MCA2158 transcriptional regulator, AraC family; AraC family transcriptional regulator 1528222 4173283 Patl_1272 Pseudoalteromonas atlantica T6c AraC family transcriptional regulator YP_660852.1 1527170 D 342610 CDS YP_660853.1 109897598 4173284 1528327..1528800 1 NC_008228.1 PFAM: protein of unknown function DUF1456; KEGG: ppr:PBPRA2338 conserved hypothetical protein; hypothetical protein 1528800 4173284 Patl_1273 Pseudoalteromonas atlantica T6c hypothetical protein YP_660853.1 1528327 D 342610 CDS YP_660854.1 109897599 4173285 complement(1528848..1529978) 1 NC_008228.1 PFAM: Patatin; KEGG: cps:CPS_1594 patatin-like phospholipase family protein; patatin 1529978 4173285 Patl_1274 Pseudoalteromonas atlantica T6c patatin YP_660854.1 1528848 R 342610 CDS YP_660855.1 109897600 4173286 complement(1530005..1530844) 1 NC_008228.1 PFAM: beta-lactamase-like; KEGG: tel:tlr1981 hypothetical protein; beta-lactamase-like protein 1530844 4173286 Patl_1275 Pseudoalteromonas atlantica T6c beta-lactamase-like protein YP_660855.1 1530005 R 342610 CDS YP_660856.1 109897601 4173287 complement(1531129..1532844) 1 NC_008228.1 TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S) Anticodon-binding YbaK/prolyl-tRNA synthetase associated region; KEGG: cps:CPS_3230 prolyl-tRNA synthetase; prolyl-tRNA synthetase 1532844 4173287 Patl_1276 Pseudoalteromonas atlantica T6c prolyl-tRNA synthetase YP_660856.1 1531129 R 342610 CDS YP_660857.1 109897602 4173288 complement(1532939..1533694) 1 NC_008228.1 PFAM: protein of unknown function UPF0066; KEGG: pha:PSHAa1622 hypothetical protein; hypothetical protein 1533694 4173288 Patl_1277 Pseudoalteromonas atlantica T6c hypothetical protein YP_660857.1 1532939 R 342610 CDS YP_660858.1 109897603 4173289 1533918..1534991 1 NC_008228.1 KEGG: cps:CPS_1107 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase-like hydrolase Haloacid dehalogenase-like hydrolase, type 3; phosphoserine phosphatase SerB 1534991 4173289 Patl_1278 Pseudoalteromonas atlantica T6c phosphoserine phosphatase SerB YP_660858.1 1533918 D 342610 CDS YP_660859.1 109897604 4173290 complement(1535033..1537555) 1 NC_008228.1 PFAM: type IV pilus assembly PilZ; KEGG: pha:PSHAa0662 hypothetical protein; type IV pilus assembly PilZ 1537555 4173290 Patl_1279 Pseudoalteromonas atlantica T6c type IV pilus assembly PilZ YP_660859.1 1535033 R 342610 CDS YP_660860.1 109897605 4173291 1537769..1539133 1 NC_008228.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1539133 4173291 Patl_1280 Pseudoalteromonas atlantica T6c DNA repair protein RadA YP_660860.1 1537769 D 342610 CDS YP_660861.1 109897606 4173292 1539319..1540386 1 NC_008228.1 KEGG: rba:RB356 hypothetical protein; hypothetical protein 1540386 4173292 Patl_1281 Pseudoalteromonas atlantica T6c hypothetical protein YP_660861.1 1539319 D 342610 CDS YP_660862.1 109897607 4173293 1540394..1540954 1 NC_008228.1 KEGG: gme:Gmet_1668 putative transmembrane protein; hypothetical protein 1540954 4173293 Patl_1282 Pseudoalteromonas atlantica T6c hypothetical protein YP_660862.1 1540394 D 342610 CDS YP_660863.1 109897608 4173331 1540954..1543065 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: mag:amb3617 hypothetical protein YddU; diguanylate cyclase/phosphodiesterase 1543065 4173331 Patl_1283 Pseudoalteromonas atlantica T6c diguanylate cyclase/phosphodiesterase YP_660863.1 1540954 D 342610 CDS YP_660864.1 109897609 4173332 complement(1544338..1547061) 1 NC_008228.1 TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase-like; KEGG: pha:PSHAa0159 aconitate hydratase; aconitate hydratase 1 1547061 4173332 Patl_1284 Pseudoalteromonas atlantica T6c aconitate hydratase 1 YP_660864.1 1544338 R 342610 CDS YP_660865.1 109897610 4173333 complement(1547176..1547937) 1 NC_008228.1 KEGG: eba:ebA2078 hypothetical protein; hypothetical protein 1547937 4173333 Patl_1285 Pseudoalteromonas atlantica T6c hypothetical protein YP_660865.1 1547176 R 342610 CDS YP_660866.1 109897611 4173334 complement(1548486..1548896) 1 NC_008228.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: pha:PSHAa2411 hypothetical protein; glutathione-dependent formaldehyde-activating protein 1548896 4173334 Patl_1286 Pseudoalteromonas atlantica T6c glutathione-dependent formaldehyde-activating protein YP_660866.1 1548486 R 342610 CDS YP_660867.1 109897612 4173335 complement(1549032..1550315) 1 NC_008228.1 KEGG: pca:Pcar_0146 transporter, NRAMP family; transporter 1550315 4173335 Patl_1287 Pseudoalteromonas atlantica T6c transporter YP_660867.1 1549032 R 342610 CDS YP_660868.1 109897613 4173336 complement(1550396..1551031) 1 NC_008228.1 PFAM: helix-turn-helix, AraC type regulatory protein, TetR; KEGG: reu:Reut_B3613 regulatory protein, TetR; TetR family transcriptional regulator 1551031 4173336 Patl_1288 Pseudoalteromonas atlantica T6c TetR family transcriptional regulator YP_660868.1 1550396 R 342610 CDS YP_660869.1 109897614 4173337 1551391..1551792 1 NC_008228.1 hypothetical protein 1551792 4173337 Patl_1289 Pseudoalteromonas atlantica T6c hypothetical protein YP_660869.1 1551391 D 342610 CDS YP_660870.1 109897615 4173338 1551977..1552903 1 NC_008228.1 TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase, subunit II COX aromatic rich; KEGG: pha:PSHAa2231 ubiquinol oxidase polypeptide II (cytochrome o subunit 2) (oxidase BO(3) subunit 2) (cytochrome o ubiquinol oxidase subunit 2) (ubiquinol oxidase chain B); ubiquinol oxidase subunit II 1552903 4173338 Patl_1290 Pseudoalteromonas atlantica T6c ubiquinol oxidase subunit II YP_660870.1 1551977 D 342610 CDS YP_660871.1 109897616 4173339 1552906..1554900 1 NC_008228.1 PFAM: cytochrome c oxidase, subunit I; KEGG: pha:PSHAa2230 ubiquinol oxidase polypeptide I (cytochrome o subunit 1) (oxidase BO(3) subunit 1) (cytochrome o ubiquinol oxidase subunit 1) (ubiquinol oxidase chain A); cytochrome-c oxidase 1554900 4173339 Patl_1291 Pseudoalteromonas atlantica T6c cytochrome-c oxidase YP_660871.1 1552906 D 342610 CDS YP_660872.1 109897617 4173340 1554897..1555541 1 NC_008228.1 PFAM: cytochrome c oxidase, subunit III; KEGG: pha:PSHAa2229 cytochrome o ubiquinol oxidase subunit III (ubiquinol oxidase chain C); cytochrome c oxidase subunit III 1555541 4173340 Patl_1292 Pseudoalteromonas atlantica T6c cytochrome c oxidase subunit III YP_660872.1 1554897 D 342610 CDS YP_660873.1 109897618 4173341 1555541..1555858 1 NC_008228.1 PFAM: cytochrome C oxidase subunit IV; KEGG: pha:PSHAa2228 cytochrome o ubiquinol oxidase protein (ubiquinol oxidase chain D); cytochrome C oxidase subunit IV 1555858 4173341 Patl_1293 Pseudoalteromonas atlantica T6c cytochrome C oxidase subunit IV YP_660873.1 1555541 D 342610 CDS YP_660874.1 109897619 4173342 1555872..1556762 1 NC_008228.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 1556762 4173342 Patl_1294 Pseudoalteromonas atlantica T6c protoheme IX farnesyltransferase YP_660874.1 1555872 D 342610 CDS YP_660875.1 109897620 4173343 complement(1556903..1560574) 1 NC_008228.1 KEGG: rba:RB641 sensory histidine protein kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; multi-sensor hybrid histidine kinase 1560574 4173343 Patl_1295 Pseudoalteromonas atlantica T6c multi-sensor hybrid histidine kinase YP_660875.1 1556903 R 342610 CDS YP_660876.1 109897621 4173344 complement(1560749..1562416) 1 NC_008228.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 1562416 4173344 Patl_1296 Pseudoalteromonas atlantica T6c putative ABC transporter ATP-binding protein YP_660876.1 1560749 R 342610 CDS YP_660877.1 109897622 4173345 1562690..1563994 1 NC_008228.1 PFAM: peptidase M20 peptidase dimerisation; KEGG: pha:PSHAb0171 putative hydrolase; peptidase M20 1563994 4173345 Patl_1297 Pseudoalteromonas atlantica T6c peptidase M20 YP_660877.1 1562690 D 342610 CDS YP_660878.1 109897623 4173346 1564018..1565067 1 NC_008228.1 PFAM: oxidoreductase-like Oxidoreductase-like homoserine dehydrogenase, NAD-binding; KEGG: cac:CAC1480 predicted dehydrogenase; oxidoreductase-like protein 1565067 4173346 Patl_1298 Pseudoalteromonas atlantica T6c oxidoreductase-like protein YP_660878.1 1564018 D 342610 CDS YP_660879.1 109897624 4173347 1565337..1566593 1 NC_008228.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1566593 glyA 4173347 glyA Pseudoalteromonas atlantica T6c serine hydroxymethyltransferase YP_660879.1 1565337 D 342610 CDS YP_660880.1 109897625 4173348 1566972..1567613 1 NC_008228.1 KEGG: pha:PSHAa0613 hypothetical protein; hypothetical protein 1567613 4173348 Patl_1300 Pseudoalteromonas atlantica T6c hypothetical protein YP_660880.1 1566972 D 342610 CDS YP_660881.1 109897626 4173349 complement(1567796..1569094) 1 NC_008228.1 hypothetical protein 1569094 4173349 Patl_1301 Pseudoalteromonas atlantica T6c hypothetical protein YP_660881.1 1567796 R 342610 CDS YP_660882.1 109897627 4173350 complement(1569091..1569600) 1 NC_008228.1 hypothetical protein 1569600 4173350 Patl_1302 Pseudoalteromonas atlantica T6c hypothetical protein YP_660882.1 1569091 R 342610 CDS YP_660883.1 109897628 4173351 complement(1569604..1572894) 1 NC_008228.1 PFAM: Sporulation related; KEGG: eli:ELI_10110 hypothetical protein; sporulation related protein 1572894 4173351 Patl_1303 Pseudoalteromonas atlantica T6c sporulation related protein YP_660883.1 1569604 R 342610 CDS YP_660884.1 109897629 4173352 complement(1572908..1573666) 1 NC_008228.1 KEGG: eli:ELI_10115 hypothetical protein; hypothetical protein 1573666 4173352 Patl_1304 Pseudoalteromonas atlantica T6c hypothetical protein YP_660884.1 1572908 R 342610 CDS YP_660885.1 109897630 4173353 complement(1573666..1574430) 1 NC_008228.1 hypothetical protein 1574430 4173353 Patl_1305 Pseudoalteromonas atlantica T6c hypothetical protein YP_660885.1 1573666 R 342610 CDS YP_660886.1 109897631 4173354 complement(1574517..1575158) 1 NC_008228.1 hypothetical protein 1575158 4173354 Patl_1306 Pseudoalteromonas atlantica T6c hypothetical protein YP_660886.1 1574517 R 342610 CDS YP_660887.1 109897632 4173355 complement(1575169..1575876) 1 NC_008228.1 hypothetical protein 1575876 4173355 Patl_1307 Pseudoalteromonas atlantica T6c hypothetical protein YP_660887.1 1575169 R 342610 CDS YP_660888.1 109897633 4173356 complement(1576809..1577585) 1 NC_008228.1 KEGG: pha:PSHAa0755 hypothetical protein; hypothetical protein 1577585 4173356 Patl_1308 Pseudoalteromonas atlantica T6c hypothetical protein YP_660888.1 1576809 R 342610 CDS YP_660889.1 109897634 4173357 complement(1577595..1578191) 1 NC_008228.1 KEGG: pha:PSHAa0754 hypothetical protein; hypothetical protein 1578191 4173357 Patl_1309 Pseudoalteromonas atlantica T6c hypothetical protein YP_660889.1 1577595 R 342610 CDS YP_660890.1 109897635 4173358 1578376..1578825 1 NC_008228.1 TIGRFAM: Ribonucleotide reductase regulator NrdR-like; PFAM: ATP-cone; KEGG: ilo:IL1871 predicted transcriptional regulator; transcriptional regulator NrdR 1578825 nrdR 4173358 nrdR Pseudoalteromonas atlantica T6c transcriptional regulator NrdR YP_660890.1 1578376 D 342610 CDS YP_660891.1 109897636 4173359 1578884..1580002 1 NC_008228.1 KEGG: ppr:PBPRA0797 putative pyrimidine deaminase/pyrimidine reductase; TIGRFAM: riboflavin biosynthesis protein RibD Riboflavin-specific deaminase-like; PFAM: CMP/dCMP deaminase, zinc-binding bifunctional deaminase-reductase-like; riboflavin biosynthesis protein RibD 1580002 4173359 Patl_1311 Pseudoalteromonas atlantica T6c riboflavin biosynthesis protein RibD YP_660891.1 1578884 D 342610 CDS YP_660892.1 109897637 4173360 1580146..1580811 1 NC_008228.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1580811 4173360 Patl_1312 Pseudoalteromonas atlantica T6c riboflavin synthase subunit alpha YP_660892.1 1580146 D 342610 CDS YP_660893.1 109897638 4173361 1580907..1582004 1 NC_008228.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase GTP cyclohydrolase II; KEGG: son:SO3467 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative; GTP cyclohydrolase II 1582004 4173361 Patl_1313 Pseudoalteromonas atlantica T6c GTP cyclohydrolase II YP_660893.1 1580907 D 342610 CDS YP_660894.1 109897639 4173362 1582254..1582730 1 NC_008228.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1582730 ribH 4173362 ribH Pseudoalteromonas atlantica T6c 6,7-dimethyl-8-ribityllumazine synthase YP_660894.1 1582254 D 342610 CDS YP_660895.1 109897640 4173363 1582731..1583153 1 NC_008228.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1583153 nusB 4173363 nusB Pseudoalteromonas atlantica T6c transcription antitermination protein NusB YP_660895.1 1582731 D 342610 CDS YP_660896.1 109897641 4173364 1583226..1584236 1 NC_008228.1 TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein-like; KEGG: spt:SPA2304 thiamine-monophosphate kinase; thiamine-monophosphate kinase 1584236 4173364 Patl_1316 Pseudoalteromonas atlantica T6c thiamine-monophosphate kinase YP_660896.1 1583226 D 342610 CDS YP_660897.1 109897642 4173365 1584236..1584724 1 NC_008228.1 PFAM: phosphatidylglycerophosphatase A; KEGG: son:SO3463 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase 1584724 4173365 Patl_1317 Pseudoalteromonas atlantica T6c phosphatidylglycerophosphatase YP_660897.1 1584236 D 342610 CDS YP_660898.1 109897643 4173366 1584827..1585270 1 NC_008228.1 PFAM: protein of unknown function DUF188; KEGG: cps:CPS_3584 hypothetical protein; hypothetical protein 1585270 4173366 Patl_1318 Pseudoalteromonas atlantica T6c hypothetical protein YP_660898.1 1584827 D 342610 CDS YP_660899.1 109897644 4173367 complement(1585355..1587220) 1 NC_008228.1 TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase, central region Transketolase-like; KEGG: vvy:VV0868 deoxyxylulose-5-phosphate synthase; deoxyxylulose-5-phosphate synthase 1587220 4173367 Patl_1319 Pseudoalteromonas atlantica T6c deoxyxylulose-5-phosphate synthase YP_660899.1 1585355 R 342610 CDS YP_660900.1 109897645 4173368 complement(1587266..1588156) 1 NC_008228.1 PFAM: Polyprenyl synthetase; KEGG: vpa:VP0687 geranyltranstransferase; polyprenyl synthetase 1588156 4173368 Patl_1320 Pseudoalteromonas atlantica T6c polyprenyl synthetase YP_660900.1 1587266 R 342610 CDS YP_660901.1 109897646 4173369 complement(1588156..1588407) 1 NC_008228.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: ppr:PBPRA0807 putative exodeoxyribonuclease, small subunit; exodeoxyribonuclease VII small subunit 1588407 4173369 Patl_1321 Pseudoalteromonas atlantica T6c exodeoxyribonuclease VII small subunit YP_660901.1 1588156 R 342610 CDS YP_660902.1 109897647 4172786 1588745..1589509 1 NC_008228.1 Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein PomA 1589509 4172786 Patl_1322 Pseudoalteromonas atlantica T6c flagellar motor protein PomA YP_660902.1 1588745 D 342610 CDS YP_660903.1 109897648 4172787 1589513..1590430 1 NC_008228.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar motor protein MotB 1590430 motB 4172787 motB Pseudoalteromonas atlantica T6c flagellar motor protein MotB YP_660903.1 1589513 D 342610 CDS YP_660904.1 109897649 4172788 complement(1590544..1591101) 1 NC_008228.1 KEGG: cps:CPS_1374 putative lipoprotein; putative lipoprotein 1591101 4172788 Patl_1324 Pseudoalteromonas atlantica T6c putative lipoprotein YP_660904.1 1590544 R 342610 CDS YP_660905.1 109897650 4172789 complement(1591110..1591634) 1 NC_008228.1 KEGG: ilo:IL1381 hypothetical protein; hypothetical protein 1591634 4172789 Patl_1325 Pseudoalteromonas atlantica T6c hypothetical protein YP_660905.1 1591110 R 342610 CDS YP_660906.1 109897651 4172790 complement(1591638..1592891) 1 NC_008228.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase Methyltransferase type 11 Methyltransferase type 12; KEGG: ilo:IL1383 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 1592891 4172790 Patl_1326 Pseudoalteromonas atlantica T6c cyclopropane-fatty-acyl-phospholipid synthase YP_660906.1 1591638 R 342610 CDS YP_660907.1 109897652 4172791 complement(1592893..1593621) 1 NC_008228.1 PFAM: protein of unknown function DUF1365; KEGG: ilo:IL1384 hypothetical protein; hypothetical protein 1593621 4172791 Patl_1327 Pseudoalteromonas atlantica T6c hypothetical protein YP_660907.1 1592893 R 342610 CDS YP_660908.1 109897653 4172792 complement(1593621..1594892) 1 NC_008228.1 KEGG: vpa:VP1121 hypothetical protein; hypothetical protein 1594892 4172792 Patl_1328 Pseudoalteromonas atlantica T6c hypothetical protein YP_660908.1 1593621 R 342610 CDS YP_660909.1 109897654 4172793 complement(1594909..1595625) 1 NC_008228.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ilo:IL1386 short chain dehydrogenase family protein; short-chain dehydrogenase/reductase SDR 1595625 4172793 Patl_1329 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_660909.1 1594909 R 342610 CDS YP_660910.1 109897655 4172794 complement(1595622..1596044) 1 NC_008228.1 PFAM: protein of unknown function DUF1486; KEGG: eca:ECA2216 hypothetical protein; hypothetical protein 1596044 4172794 Patl_1330 Pseudoalteromonas atlantica T6c hypothetical protein YP_660910.1 1595622 R 342610 CDS YP_660911.1 109897656 4172795 1596207..1596773 1 NC_008228.1 SMART: Peptidase S16, lon-like; KEGG: vpa:VP2360 hypothetical protein; peptidase S16, lon-like 1596773 4172795 Patl_1331 Pseudoalteromonas atlantica T6c peptidase S16, lon-like YP_660911.1 1596207 D 342610 CDS YP_660912.1 109897657 4172796 1596829..1597443 1 NC_008228.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 1597443 4172796 Patl_1332 Pseudoalteromonas atlantica T6c RNA polymerase sigma factor YP_660912.1 1596829 D 342610 CDS YP_660913.1 109897658 4172797 1597436..1598107 1 NC_008228.1 TIGRFAM: anti-sigma factor, putative, ChrR family; KEGG: ilo:IL1392 transcription negative regulator ChrR; anti-ECF sigma factor ChrR 1598107 4172797 Patl_1333 Pseudoalteromonas atlantica T6c anti-ECF sigma factor ChrR YP_660913.1 1597436 D 342610 CDS YP_660914.1 109897659 4172798 complement(1598187..1598954) 1 NC_008228.1 KEGG: cps:CPS_3916 putative lipoprotein; putative lipoprotein 1598954 4172798 Patl_1334 Pseudoalteromonas atlantica T6c putative lipoprotein YP_660914.1 1598187 R 342610 CDS YP_660915.1 109897660 4172799 1599127..1600110 1 NC_008228.1 KEGG: eca:ECA3347 ribosomal large subunit pseudouridine synthase D; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 pseudouridine synthase; RluA family pseudouridine synthase 1600110 4172799 Patl_1335 Pseudoalteromonas atlantica T6c RluA family pseudouridine synthase YP_660915.1 1599127 D 342610 CDS YP_660916.1 109897661 4172800 1600117..1600851 1 NC_008228.1 PFAM: protein of unknown function DUF152; KEGG: mca:MCA0973 conserved hypothetical protein TIGR00726; hypothetical protein 1600851 4172800 Patl_1336 Pseudoalteromonas atlantica T6c hypothetical protein YP_660916.1 1600117 D 342610 CDS YP_660917.1 109897662 4172801 1600972..1603548 1 NC_008228.1 PFAM: AAA ATPase, central region Clp, N terminal ATPase associated with various cellular activities, AAA_5 ATPase AAA-2; SMART: ATPase; KEGG: ilo:IL1181 ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones; ATPase 1603548 4172801 Patl_1337 Pseudoalteromonas atlantica T6c ATPase YP_660917.1 1600972 D 342610 CDS YP_660918.1 109897663 4172802 complement(1603657..1606452) 1 NC_008228.1 PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: neu:NE1444 TPR repeat; hypothetical protein 1606452 4172802 Patl_1338 Pseudoalteromonas atlantica T6c hypothetical protein YP_660918.1 1603657 R 342610 CDS YP_660919.1 109897664 4172803 complement(1606610..1607374) 1 NC_008228.1 KEGG: hch:HCH_00502 protein of unknown function (DUF1555); hypothetical protein 1607374 4172803 Patl_1339 Pseudoalteromonas atlantica T6c hypothetical protein YP_660919.1 1606610 R 342610 CDS YP_660920.1 109897665 4172804 1607753..1608577 1 NC_008228.1 KEGG: ilo:IL1180 phosphatidylserine synthase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 1608577 4172804 Patl_1340 Pseudoalteromonas atlantica T6c CDP-diacylglycerol--serine O-phosphatidyltransferase YP_660920.1 1607753 D 342610 CDS YP_660921.1 109897666 4172810 complement(1615679..1617835) 1 NC_008228.1 PFAM: protein of unknown function DUF699, ATPase putative; KEGG: pha:PSHAa0121 hypothetical protein; hypothetical protein 1617835 4172810 Patl_1341 Pseudoalteromonas atlantica T6c hypothetical protein YP_660921.1 1615679 R 342610 CDS YP_660922.1 109897667 4172811 1617903..1618310 1 NC_008228.1 PFAM: thioesterase superfamily; KEGG: cps:CPS_1696 thioesterase family protein; thioesterase superfamily protein 1618310 4172811 Patl_1342 Pseudoalteromonas atlantica T6c thioesterase superfamily protein YP_660922.1 1617903 D 342610 CDS YP_660923.1 109897668 4172812 1618310..1619215 1 NC_008228.1 KEGG: pha:PSHAb0433 hypothetical protein; hypothetical protein 1619215 4172812 Patl_1343 Pseudoalteromonas atlantica T6c hypothetical protein YP_660923.1 1618310 D 342610 CDS YP_660924.1 109897669 4172814 1619481..1621544 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0067 TonB-dependent receptor; TonB-dependent receptor 1621544 4172814 Patl_1344 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_660924.1 1619481 D 342610 CDS YP_660925.1 109897670 4172815 1621560..1621817 1 NC_008228.1 KEGG: pha:PSHAa2432 hypothetical protein; hypothetical protein 1621817 4172815 Patl_1345 Pseudoalteromonas atlantica T6c hypothetical protein YP_660925.1 1621560 D 342610 CDS YP_660926.1 109897671 4172816 1621817..1622464 1 NC_008228.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: cps:CPS_0065 putative nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC 1622464 4172816 Patl_1346 Pseudoalteromonas atlantica T6c nicotinamide mononucleotide transporter PnuC YP_660926.1 1621817 D 342610 CDS YP_660927.1 109897672 4172817 1622442..1623281 1 NC_008228.1 PFAM: aminoglycoside phosphotransferase; KEGG: ilo:IL2355 choline kinase involved in LPS biosynthesis; aminoglycoside phosphotransferase 1623281 4172817 Patl_1347 Pseudoalteromonas atlantica T6c aminoglycoside phosphotransferase YP_660927.1 1622442 D 342610 CDS YP_660928.1 109897673 4171845 1623851..1624396 1 NC_008228.1 hypothetical protein 1624396 4171845 Patl_1348 Pseudoalteromonas atlantica T6c hypothetical protein YP_660928.1 1623851 D 342610 CDS YP_660929.1 109897674 4171846 1624389..1624835 1 NC_008228.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: ssn:SSO_4523 acyltransferase for 30S ribosomal subunit protein S18; acetylation of N-terminal alanine; ribosomal-protein-alanine acetyltransferase 1624835 4171846 Patl_1349 Pseudoalteromonas atlantica T6c ribosomal-protein-alanine acetyltransferase YP_660929.1 1624389 D 342610 CDS YP_660930.1 109897675 4171847 complement(1624890..1625144) 1 NC_008228.1 XRE family transcriptional regulator 1625144 4171847 Patl_1350 Pseudoalteromonas atlantica T6c XRE family transcriptional regulator YP_660930.1 1624890 R 342610 CDS YP_660931.1 109897676 4171848 complement(1625431..1626216) 1 NC_008228.1 KEGG: ath:At1g28290 pollen Ole e 1 allergen and extensin family protein; hypothetical protein 1626216 4171848 Patl_1351 Pseudoalteromonas atlantica T6c hypothetical protein YP_660931.1 1625431 R 342610 CDS YP_660932.1 109897677 4171849 complement(1626297..1627007) 1 NC_008228.1 hypothetical protein 1627007 4171849 Patl_1352 Pseudoalteromonas atlantica T6c hypothetical protein YP_660932.1 1626297 R 342610 CDS YP_660933.1 109897678 4171850 complement(1627007..1627273) 1 NC_008228.1 PFAM: helix-turn-helix motif; XRE family transcriptional regulator 1627273 4171850 Patl_1353 Pseudoalteromonas atlantica T6c XRE family transcriptional regulator YP_660933.1 1627007 R 342610 CDS YP_660934.1 109897679 4171851 1627867..1628679 1 NC_008228.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rba:RB9586 probable oxidoreductase; short-chain dehydrogenase/reductase SDR 1628679 4171851 Patl_1354 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_660934.1 1627867 D 342610 CDS YP_660935.1 109897680 4171852 complement(1629072..1629317) 1 NC_008228.1 KEGG: pha:PSHAa0191 hypothetical protein; hypothetical protein 1629317 4171852 Patl_1355 Pseudoalteromonas atlantica T6c hypothetical protein YP_660935.1 1629072 R 342610 CDS YP_660936.1 109897681 4171853 complement(1629528..1630433) 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: cps:CPS_2531 transcriptional regulator, LysR family; LysR family transcriptional regulator 1630433 4171853 Patl_1356 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_660936.1 1629528 R 342610 CDS YP_660937.1 109897682 4171854 1630549..1631529 1 NC_008228.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: rba:RB9584 ripening-induced protein-putative Zn-containing oxidoreductase; zinc-binding alcohol dehydrogenase 1631529 4171854 Patl_1357 Pseudoalteromonas atlantica T6c zinc-binding alcohol dehydrogenase YP_660937.1 1630549 D 342610 CDS YP_660938.1 109897683 4171855 1631882..1633468 1 NC_008228.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1633468 prfC 4171855 prfC Pseudoalteromonas atlantica T6c peptide chain release factor 3 YP_660938.1 1631882 D 342610 CDS YP_660939.1 109897684 4171856 1633544..1635280 1 NC_008228.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1635280 argS 4171856 argS Pseudoalteromonas atlantica T6c arginyl-tRNA synthetase YP_660939.1 1633544 D 342610 CDS YP_660940.1 109897685 4171857 1635520..1636566 1 NC_008228.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor PCRF; KEGG: ppr:PBPRA0569 putative peptide chain release factor 2; peptide chain release factor 2 1636566 4171857 Patl_1360 Pseudoalteromonas atlantica T6c peptide chain release factor 2 YP_660940.1 1635520 D 342610 CDS YP_660941.1 109897686 4171858 1636610..1638163 1 NC_008228.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1638163 lysS 4171858 lysS Pseudoalteromonas atlantica T6c lysyl-tRNA synthetase YP_660941.1 1636610 D 342610 CDS YP_660942.1 109897687 4171859 complement(1638319..1639203) 1 NC_008228.1 KEGG: vvu:VV11810 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase-like Ketopantoate reductase ApbA/PanE-like; 2-dehydropantoate 2-reductase 1639203 4171859 Patl_1362 Pseudoalteromonas atlantica T6c 2-dehydropantoate 2-reductase YP_660942.1 1638319 R 342610 CDS YP_660943.1 109897688 4171860 complement(1639221..1639937) 1 NC_008228.1 TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: ppr:PBPRA2511 putative pseudouridine synthase Rlu family protein; pseudouridine synthase Rlu family protein 1639937 4171860 Patl_1363 Pseudoalteromonas atlantica T6c pseudouridine synthase Rlu family protein YP_660943.1 1639221 R 342610 CDS YP_660944.1 109897689 4171861 complement(1639930..1640493) 1 NC_008228.1 PFAM: Hpt; KEGG: pha:PSHAa2621 sensory box sensor histidine kinase/response regulator; Hpt protein 1640493 4171861 Patl_1364 Pseudoalteromonas atlantica T6c Hpt protein YP_660944.1 1639930 R 342610 CDS YP_660945.1 109897690 4171862 1640599..1643475 1 NC_008228.1 PFAM: peptidase M16-like; KEGG: son:SO3560 peptidase, M16 family; peptidase M16-like protein 1643475 4171862 Patl_1365 Pseudoalteromonas atlantica T6c peptidase M16-like protein YP_660945.1 1640599 D 342610 CDS YP_660946.1 109897691 4171863 1643567..1645168 1 NC_008228.1 TIGRFAM: glutamate--cysteine ligase; KEGG: cps:CPS_4078 glutamate--cysteine ligase; glutamate--cysteine ligase 1645168 4171863 Patl_1366 Pseudoalteromonas atlantica T6c glutamate--cysteine ligase YP_660946.1 1643567 D 342610 CDS YP_660947.1 109897692 4171864 1647909..1648565 1 NC_008228.1 KEGG: cps:CPS_4077 putative lipoprotein; putative lipoprotein 1648565 4171864 Patl_1367 Pseudoalteromonas atlantica T6c putative lipoprotein YP_660947.1 1647909 D 342610 CDS YP_660948.1 109897693 4171865 1649245..1650792 1 NC_008228.1 PFAM: AMP-dependent synthetase and ligase; KEGG: reu:Reut_A3057 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1650792 4171865 Patl_1368 Pseudoalteromonas atlantica T6c AMP-dependent synthetase and ligase YP_660948.1 1649245 D 342610 CDS YP_660949.1 109897694 4171866 complement(1650789..1651415) 1 NC_008228.1 PFAM: regulatory protein, TetR; KEGG: cps:CPS_2448 transcription regulator, TetR family; TetR family transcriptional regulator 1651415 4171866 Patl_1369 Pseudoalteromonas atlantica T6c TetR family transcriptional regulator YP_660949.1 1650789 R 342610 CDS YP_660950.1 109897695 4171867 1651550..1652425 1 NC_008228.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ccr:CC0353 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase 1652425 4171867 Patl_1370 Pseudoalteromonas atlantica T6c enoyl-CoA hydratase/isomerase YP_660950.1 1651550 D 342610 CDS YP_660951.1 109897696 4171868 1652457..1654505 1 NC_008228.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cps:CPS_2449 2,4-dienoyl-CoA reductase; NADH:flavin oxidoreductase 1654505 4171868 Patl_1371 Pseudoalteromonas atlantica T6c NADH:flavin oxidoreductase YP_660951.1 1652457 D 342610 CDS YP_660952.1 109897697 4171869 complement(1654602..1655483) 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: cps:CPS_4921 substrate-binding transcriptional regulator, LysR family; LysR family transcriptional regulator 1655483 4171869 Patl_1372 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_660952.1 1654602 R 342610 CDS YP_660953.1 109897698 4171870 1655631..1656608 1 NC_008228.1 PFAM: aldo/keto reductase; KEGG: pha:PSHAa0541 oxidoreductase, aldo/keto reductase; aldo/keto reductase 1656608 4171870 Patl_1373 Pseudoalteromonas atlantica T6c aldo/keto reductase YP_660953.1 1655631 D 342610 CDS YP_660954.1 109897699 4171871 1656696..1657046 1 NC_008228.1 KEGG: sfx:S3217 hypothetical protein; hypothetical protein 1657046 4171871 Patl_1374 Pseudoalteromonas atlantica T6c hypothetical protein YP_660954.1 1656696 D 342610 CDS YP_660955.1 109897700 4171872 1657116..1658897 1 NC_008228.1 PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: cps:CPS_0985 putative alpha amylase; alpha amylase 1658897 4171872 Patl_1375 Pseudoalteromonas atlantica T6c alpha amylase YP_660955.1 1657116 D 342610 CDS YP_660956.1 109897701 4171873 complement(1658989..1660320) 1 NC_008228.1 PFAM: Na+/H+ antiporter NhaC; KEGG: ilo:IL2378 Na+/H+ antiporter; Na+/H+ antiporter NhaC 1660320 4171873 Patl_1376 Pseudoalteromonas atlantica T6c Na+/H+ antiporter NhaC YP_660956.1 1658989 R 342610 CDS YP_660957.1 109897702 4171874 1660746..1662029 1 NC_008228.1 PFAM: sodium/hydrogen exchanger; KEGG: pha:PSHAb0496 putative Na+/H+ antiporter; sodium/hydrogen exchanger 1662029 4171874 Patl_1377 Pseudoalteromonas atlantica T6c sodium/hydrogen exchanger YP_660957.1 1660746 D 342610 CDS YP_660958.1 109897703 4171875 1662178..1662579 1 NC_008228.1 PFAM: BLUF domain containing protein; KEGG: son:SO3629 expression activator-related protein; BLUF domain-containing protein 1662579 4171875 Patl_1378 Pseudoalteromonas atlantica T6c BLUF domain-containing protein YP_660958.1 1662178 D 342610 CDS YP_660959.1 109897704 4171876 complement(1662631..1664499) 1 NC_008228.1 KEGG: cps:CPS_1758 putative alkaline phosphatase; putative alkaline phosphatase 1664499 4171876 Patl_1379 Pseudoalteromonas atlantica T6c putative alkaline phosphatase YP_660959.1 1662631 R 342610 CDS YP_660960.1 109897705 4171878 1666093..1666488 1 NC_008228.1 KEGG: pae:PA0914 hypothetical protein; hypothetical protein 1666488 4171878 Patl_1381 Pseudoalteromonas atlantica T6c hypothetical protein YP_660960.1 1666093 D 342610 CDS YP_660961.1 109897706 4171879 1666567..1666980 1 NC_008228.1 hypothetical protein 1666980 4171879 Patl_1382 Pseudoalteromonas atlantica T6c hypothetical protein YP_660961.1 1666567 D 342610 CDS YP_660962.1 109897707 4171880 1667471..1667896 1 NC_008228.1 hypothetical protein 1667896 4171880 Patl_1383 Pseudoalteromonas atlantica T6c hypothetical protein YP_660962.1 1667471 D 342610 CDS YP_660963.1 109897708 4171881 complement(1668337..1668978) 1 NC_008228.1 PFAM: transposase IS116/IS110/IS902; KEGG: cps:CPS_2742 ISCps7, transposase; transposase IS116/IS110/IS902 1668978 4171881 Patl_1384 Pseudoalteromonas atlantica T6c transposase IS116/IS110/IS902 YP_660963.1 1668337 R 342610 CDS YP_660964.1 109897709 4171882 complement(1670082..1671065) 1 NC_008228.1 PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAb0050 hypothetical protein; hypothetical protein 1671065 4171882 Patl_1385 Pseudoalteromonas atlantica T6c hypothetical protein YP_660964.1 1670082 R 342610 CDS YP_660965.1 109897710 4173526 1671349..1671687 1 NC_008228.1 PFAM: helix-turn-helix motif; KEGG: cps:CPS_2176 hypothetical protein; XRE family transcriptional regulator 1671687 4173526 Patl_1386 Pseudoalteromonas atlantica T6c XRE family transcriptional regulator YP_660965.1 1671349 D 342610 CDS YP_660966.1 109897711 4173527 complement(1671789..1672997) 1 NC_008228.1 PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase; transposase, IS4 1672997 4173527 Patl_1387 Pseudoalteromonas atlantica T6c transposase, IS4 YP_660966.1 1671789 R 342610 CDS YP_660967.1 109897712 4173528 1673219..1673539 1 NC_008228.1 hypothetical protein 1673539 4173528 Patl_1388 Pseudoalteromonas atlantica T6c hypothetical protein YP_660967.1 1673219 D 342610 CDS YP_660968.1 109897713 4173529 complement(1673792..1674160) 1 NC_008228.1 PFAM: Uncharacterised conserved protein UCP006287; KEGG: son:SO3983 hypothetical protein; hypothetical protein 1674160 4173529 Patl_1389 Pseudoalteromonas atlantica T6c hypothetical protein YP_660968.1 1673792 R 342610 CDS YP_660969.1 109897714 4173530 complement(1674182..1674676) 1 NC_008228.1 PFAM: protein of unknown function DUF45; KEGG: cps:CPS_3293 conserved hypothetical protein; hypothetical protein 1674676 4173530 Patl_1390 Pseudoalteromonas atlantica T6c hypothetical protein YP_660969.1 1674182 R 342610 CDS YP_660970.1 109897715 4173531 complement(1674696..1674989) 1 NC_008228.1 KEGG: pha:PSHAb0334 hypothetical protein; hypothetical protein 1674989 4173531 Patl_1391 Pseudoalteromonas atlantica T6c hypothetical protein YP_660970.1 1674696 R 342610 CDS YP_660971.1 109897716 4173532 complement(1675056..1676621) 1 NC_008228.1 PFAM: SpoVR; KEGG: vpa:VP0985 hypothetical protein; SpoVR family protein 1676621 4173532 Patl_1392 Pseudoalteromonas atlantica T6c SpoVR family protein YP_660971.1 1675056 R 342610 CDS YP_660972.1 109897717 4173533 complement(1676625..1677908) 1 NC_008228.1 PFAM: protein of unknown function DUF444; KEGG: pha:PSHAa1213 hypothetical protein; hypothetical protein 1677908 4173533 Patl_1393 Pseudoalteromonas atlantica T6c hypothetical protein YP_660972.1 1676625 R 342610 CDS YP_660973.1 109897718 4173534 complement(1677962..1679884) 1 NC_008228.1 PFAM: PrkA serine kinase PrkA AAA; KEGG: vch:VC1872 serine protein kinase; putative serine protein kinase PrkA 1679884 4173534 Patl_1394 Pseudoalteromonas atlantica T6c putative serine protein kinase PrkA YP_660973.1 1677962 R 342610 CDS YP_660974.1 109897719 4173535 complement(1680172..1680753) 1 NC_008228.1 PFAM: manganese and iron superoxide dismutase; KEGG: pha:PSHAa1215 iron superoxide dismutase; superoxide dismutase 1680753 4173535 Patl_1395 Pseudoalteromonas atlantica T6c superoxide dismutase YP_660974.1 1680172 R 342610 CDS YP_660975.1 109897720 4173536 1681020..1681349 1 NC_008228.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: cps:CPS_3475 glutaredoxin, homolog; glutaredoxin-like protein 1681349 4173536 Patl_1396 Pseudoalteromonas atlantica T6c glutaredoxin-like protein YP_660975.1 1681020 D 342610 CDS YP_660976.1 109897721 4173537 complement(1681535..1681729) 1 NC_008228.1 PFAM: BFD-like [2Fe-2S]-binding region; KEGG: vvy:VV3028 bacterioferritin-associated ferredoxin; BFD-like (2Fe-2S)-binding protein 1681729 4173537 Patl_1397 Pseudoalteromonas atlantica T6c BFD-like (2Fe-2S)-binding protein YP_660976.1 1681535 R 342610 CDS YP_660977.1 109897722 4173538 1681996..1682601 1 NC_008228.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: ilo:IL1803 peroxiredoxin, AhpC/Tsa family; alkyl hydroperoxide reductase 1682601 4173538 Patl_1398 Pseudoalteromonas atlantica T6c alkyl hydroperoxide reductase YP_660977.1 1681996 D 342610 CDS YP_660978.1 109897723 4173539 complement(1682716..1683351) 1 NC_008228.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 1683351 4173539 Patl_1399 Pseudoalteromonas atlantica T6c ribonuclease T YP_660978.1 1682716 R 342610 CDS YP_660979.1 109897724 4173540 1683561..1684424 1 NC_008228.1 PFAM: OmpA/MotB; KEGG: cps:CPS_3471 sodium-type flagellar protein MotY; OmpA/MotB protein 1684424 4173540 Patl_1400 Pseudoalteromonas atlantica T6c OmpA/MotB protein YP_660979.1 1683561 D 342610 CDS YP_660980.1 109897725 4173541 complement(1684559..1685548) 1 NC_008228.1 hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase 1685548 glpQ 4173541 glpQ Pseudoalteromonas atlantica T6c glycerophosphodiester phosphodiesterase YP_660980.1 1684559 R 342610 CDS YP_660981.1 109897726 4173542 complement(1685585..1685968) 1 NC_008228.1 KEGG: pha:PSHAa1091 glyoxalase I, nickel isomerase (lactoylglutathione lyase); TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 1685968 4173542 Patl_1402 Pseudoalteromonas atlantica T6c lactoylglutathione lyase YP_660981.1 1685585 R 342610 CDS YP_660982.1 109897727 4173543 complement(1686071..1686385) 1 NC_008228.1 PFAM: small multidrug resistance protein; KEGG: yps:YPTB0409 putative SugE efflux pump; small multidrug resistance protein 1686385 4173543 Patl_1403 Pseudoalteromonas atlantica T6c small multidrug resistance protein YP_660982.1 1686071 R 342610 CDS YP_660983.1 109897728 4173544 complement(1686808..1688181) 1 NC_008228.1 PFAM: glycoside hydrolase, family 5 Thrombospondin type 3 repeat Carbohydrate-binding family V/XII; KEGG: hch:HCH_03914 endoglucanase; cellulase 1688181 4173544 Patl_1404 Pseudoalteromonas atlantica T6c cellulase YP_660983.1 1686808 R 342610 CDS YP_660984.1 109897729 4173545 complement(1689023..1690048) 1 NC_008228.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: bja:blr3973 probable NADP-dependent oxidoreductase; zinc-binding alcohol dehydrogenase 1690048 4173545 Patl_1405 Pseudoalteromonas atlantica T6c zinc-binding alcohol dehydrogenase YP_660984.1 1689023 R 342610 CDS YP_660985.1 109897730 4173546 complement(1690452..1691222) 1 NC_008228.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: bja:bll1082 2-deoxy-D-gluconate 3-dehydrogenase; short-chain dehydrogenase/reductase SDR 1691222 4173546 Patl_1406 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_660985.1 1690452 R 342610 CDS YP_660986.1 109897731 4173547 complement(1691387..1691638) 1 NC_008228.1 hypothetical protein 1691638 4173547 Patl_1407 Pseudoalteromonas atlantica T6c hypothetical protein YP_660986.1 1691387 R 342610 CDS YP_660987.1 109897732 4173548 1691940..1693760 1 NC_008228.1 PFAM: acyl-CoA dehydrogenase-like; KEGG: cps:CPS_2263 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase-like protein 1693760 4173548 Patl_1408 Pseudoalteromonas atlantica T6c acyl-CoA dehydrogenase-like protein YP_660987.1 1691940 D 342610 CDS YP_660988.1 109897733 4173549 complement(1694036..1694746) 1 NC_008228.1 hypothetical protein 1694746 4173549 Patl_1409 Pseudoalteromonas atlantica T6c hypothetical protein YP_660988.1 1694036 R 342610 CDS YP_660989.1 109897734 4173550 complement(1694830..1695138) 1 NC_008228.1 hypothetical protein 1695138 4173550 Patl_1410 Pseudoalteromonas atlantica T6c hypothetical protein YP_660989.1 1694830 R 342610 CDS YP_660990.1 109897735 4173551 complement(1695482..1695853) 1 NC_008228.1 hypothetical protein 1695853 4173551 Patl_1411 Pseudoalteromonas atlantica T6c hypothetical protein YP_660990.1 1695482 R 342610 CDS YP_660991.1 109897736 4173552 complement(1695942..1696193) 1 NC_008228.1 hypothetical protein 1696193 4173552 Patl_1412 Pseudoalteromonas atlantica T6c hypothetical protein YP_660991.1 1695942 R 342610 CDS YP_660992.1 109897737 4173553 complement(1696542..1696856) 1 NC_008228.1 KEGG: vfi:VF1353 virulence gene repressor RsaL; virulence gene repressor RsaL 1696856 4173553 Patl_1413 Pseudoalteromonas atlantica T6c virulence gene repressor RsaL YP_660992.1 1696542 R 342610 CDS YP_660993.1 109897738 4173555 complement(1698607..1699353) 1 NC_008228.1 KEGG: lpn:lpg2572 hypothetical protein; hypothetical protein 1699353 4173555 Patl_1415 Pseudoalteromonas atlantica T6c hypothetical protein YP_660993.1 1698607 R 342610 CDS YP_660994.1 109897739 4173556 complement(1699407..1700387) 1 NC_008228.1 KEGG: nmu:Nmul_A0921 hypothetical protein; hypothetical protein 1700387 4173556 Patl_1416 Pseudoalteromonas atlantica T6c hypothetical protein YP_660994.1 1699407 R 342610 CDS YP_660995.1 109897740 4173558 1701243..1701911 1 NC_008228.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: sdn:Sden_1663 GntR-like protein; GntR family transcriptional regulator 1701911 4173558 Patl_1418 Pseudoalteromonas atlantica T6c GntR family transcriptional regulator YP_660995.1 1701243 D 342610 CDS YP_660996.1 109897741 4173559 1702016..1702894 1 NC_008228.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 1702894 prpB 4173559 prpB Pseudoalteromonas atlantica T6c 2-methylisocitrate lyase YP_660996.1 1702016 D 342610 CDS YP_660997.1 109897742 4173560 1703010..1704134 1 NC_008228.1 KEGG: cps:CPS_2821 putative 2-methylcitrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; 2-methylcitrate synthase/citrate synthase II 1704134 4173560 Patl_1420 Pseudoalteromonas atlantica T6c 2-methylcitrate synthase/citrate synthase II YP_660997.1 1703010 D 342610 CDS YP_660998.1 109897743 4173561 1704267..1706873 1 NC_008228.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1706873 4173561 Patl_1421 Pseudoalteromonas atlantica T6c aconitate hydratase YP_660998.1 1704267 D 342610 CDS YP_660999.1 109897744 4173562 1706883..1708112 1 NC_008228.1 TIGRFAM: probable AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: ppu:PP2337 hypothetical protein; putative AcnD-accessory protein PrpF 1708112 4173562 Patl_1422 Pseudoalteromonas atlantica T6c putative AcnD-accessory protein PrpF YP_660999.1 1706883 D 342610 CDS YP_661000.1 109897745 4173563 1708330..1709511 1 NC_008228.1 PFAM: major facilitator superfamily MFS_1; KEGG: hch:HCH_06744 permease of the major facilitator superfamily; major facilitator superfamily transporter 1709511 4173563 Patl_1423 Pseudoalteromonas atlantica T6c major facilitator superfamily transporter YP_661000.1 1708330 D 342610 CDS YP_661001.1 109897746 4173564 1709704..1710717 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: hch:HCH_02106 response regulator containing a CheY-like receiver domain and a GGDEF domain; diguanylate cyclase 1710717 4173564 Patl_1424 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_661001.1 1709704 D 342610 CDS YP_661002.1 109897747 4173582 1711212..1712306 1 NC_008228.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: mca:MCA0639 NADH-dependent flavin oxidoreductase, Oye family; NADH:flavin oxidoreductase 1712306 4173582 Patl_1425 Pseudoalteromonas atlantica T6c NADH:flavin oxidoreductase YP_661002.1 1711212 D 342610 CDS YP_661003.1 109897748 4173583 1712484..1713539 1 NC_008228.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: ilo:IL1440 Zn-dependent alcohol dehydrogenase; alcohol dehydrogenase GroES-like protein 1713539 4173583 Patl_1426 Pseudoalteromonas atlantica T6c alcohol dehydrogenase GroES-like protein YP_661003.1 1712484 D 342610 CDS YP_661004.1 109897749 4173584 1714223..1715626 1 NC_008228.1 PFAM: Ethanolamine ammonia lyase large subunit; KEGG: psp:PSPPH_4667 ethanolamine ammonia-lyase, heavy subunit; ethanolamine ammonia lyase large subunit 1715626 4173584 Patl_1427 Pseudoalteromonas atlantica T6c ethanolamine ammonia lyase large subunit YP_661004.1 1714223 D 342610 CDS YP_661005.1 109897750 4173585 1715626..1716534 1 NC_008228.1 catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 1716534 4173585 Patl_1428 Pseudoalteromonas atlantica T6c ethanolamine ammonia-lyase small subunit YP_661005.1 1715626 D 342610 CDS YP_661006.1 109897751 4173586 complement(1716663..1718393) 1 NC_008228.1 KEGG: pha:PSHAa1664 hypothetical protein; hypothetical protein 1718393 4173586 Patl_1429 Pseudoalteromonas atlantica T6c hypothetical protein YP_661006.1 1716663 R 342610 CDS YP_661007.1 109897752 4173587 complement(1718674..1720185) 1 NC_008228.1 KEGG: cps:CPS_0144 putative lipoprotein; putative lipoprotein 1720185 4173587 Patl_1430 Pseudoalteromonas atlantica T6c putative lipoprotein YP_661007.1 1718674 R 342610 CDS YP_661008.1 109897753 4173588 complement(1720632..1721882) 1 NC_008228.1 KEGG: noc:Noc_0277 possible streptogramin lyase, gluconolactonase family; lyase -like protein 1721882 4173588 Patl_1431 Pseudoalteromonas atlantica T6c lyase -like protein YP_661008.1 1720632 R 342610 CDS YP_661009.1 109897754 4173589 complement(1722055..1722735) 1 NC_008228.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pha:PSHAb0174 putative oxidoreductase, NAD(P)-binding domain; short-chain dehydrogenase/reductase SDR 1722735 4173589 Patl_1432 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_661009.1 1722055 R 342610 CDS YP_661010.1 109897755 4173590 1723060..1724295 1 NC_008228.1 PFAM: protein of unknown function DUF1212; KEGG: pha:PSHAb0236 hypothetical protein; hypothetical protein 1724295 4173590 Patl_1433 Pseudoalteromonas atlantica T6c hypothetical protein YP_661010.1 1723060 D 342610 CDS YP_661011.1 109897756 4173591 complement(1724342..1725973) 1 NC_008228.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: lpn:lpg0074 glutamate synthase; ferredoxin-dependent glutamate synthase 1725973 4173591 Patl_1434 Pseudoalteromonas atlantica T6c ferredoxin-dependent glutamate synthase YP_661011.1 1724342 R 342610 CDS YP_661012.1 109897757 4173592 complement(1726151..1726522) 1 NC_008228.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_2679 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 1726522 4173592 Patl_1435 Pseudoalteromonas atlantica T6c glyoxalase/bleomycin resistance protein/dioxygenase YP_661012.1 1726151 R 342610 CDS YP_661013.1 109897758 4173593 complement(1726714..1727601) 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: cps:CPS_0816 transcriptional regulator, LysR family; LysR family transcriptional regulator 1727601 4173593 Patl_1436 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_661013.1 1726714 R 342610 CDS YP_661014.1 109897759 4173594 1727829..1728155 1 NC_008228.1 PFAM: small multidrug resistance protein; KEGG: pha:PSHAa2214 quaternary ammonium compound-resistance protein (Quarternary ammonium determinant F); small multidrug resistance protein 1728155 4173594 Patl_1437 Pseudoalteromonas atlantica T6c small multidrug resistance protein YP_661014.1 1727829 D 342610 CDS YP_661015.1 109897760 4173595 1728300..1729424 1 NC_008228.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: pha:PSHAa2213 alcohol dehydrogenase class III (glutathione-dependent formaldehyde dehydrogenase )(FDH) (FALDH); zinc-binding alcohol dehydrogenase 1729424 4173595 Patl_1438 Pseudoalteromonas atlantica T6c zinc-binding alcohol dehydrogenase YP_661015.1 1728300 D 342610 CDS YP_661016.1 109897761 4173596 1729548..1730405 1 NC_008228.1 PFAM: putative esterase; KEGG: cps:CPS_0819 putative esterase; carboxylesterase 1730405 4173596 Patl_1439 Pseudoalteromonas atlantica T6c carboxylesterase YP_661016.1 1729548 D 342610 CDS YP_661017.1 109897762 4173597 complement(1730483..1731457) 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: cps:CPS_1392 transcriptional regulator, LysR family; LysR family transcriptional regulator 1731457 4173597 Patl_1440 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_661017.1 1730483 R 342610 CDS YP_661018.1 109897763 4173598 1731605..1732456 1 NC_008228.1 KEGG: rba:RB12586 hypothetical protein; hypothetical protein 1732456 4173598 Patl_1441 Pseudoalteromonas atlantica T6c hypothetical protein YP_661018.1 1731605 D 342610 CDS YP_661019.1 109897764 4173599 complement(1732667..1732990) 1 NC_008228.1 hypothetical protein 1732990 4173599 Patl_1442 Pseudoalteromonas atlantica T6c hypothetical protein YP_661019.1 1732667 R 342610 CDS YP_661020.1 109897765 4173600 1733332..1735563 1 NC_008228.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ana:alr2588 ferrichrome-iron receptor; TonB-dependent siderophore receptor 1735563 4173600 Patl_1443 Pseudoalteromonas atlantica T6c TonB-dependent siderophore receptor YP_661020.1 1733332 D 342610 CDS YP_661021.1 109897766 4173601 1735724..1736914 1 NC_008228.1 PFAM: PepSY-associated TM helix; KEGG: ilo:IL2512 uncharacterized iron-regulated membrane protein; PepSY-associated TM helix-containing protein 1736914 4173601 Patl_1444 Pseudoalteromonas atlantica T6c PepSY-associated TM helix-containing protein YP_661021.1 1735724 D 342610 CDS YP_661022.1 109897767 4173602 complement(1737132..1738439) 1 NC_008228.1 PFAM: short chain fatty acid transporter; KEGG: son:SO1391 short-chain fatty acids transporter; short chain fatty acid transporter 1738439 4173602 Patl_1445 Pseudoalteromonas atlantica T6c short chain fatty acid transporter YP_661022.1 1737132 R 342610 CDS YP_661023.1 109897768 4173603 1738740..1739666 1 NC_008228.1 PFAM: protein of unknown function UPF0187; KEGG: par:Psyc_1261 hypothetical protein; hypothetical protein 1739666 4173603 Patl_1446 Pseudoalteromonas atlantica T6c hypothetical protein YP_661023.1 1738740 D 342610 CDS YP_661024.1 109897769 4173604 complement(1740074..1741006) 1 NC_008228.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pst:PSPTO0258 D-isomer specific 2-hydroxyacid dehydrogenase family protein; D-isomer specific 2-hydroxyacid dehydrogenase 1741006 4173604 Patl_1447 Pseudoalteromonas atlantica T6c D-isomer specific 2-hydroxyacid dehydrogenase YP_661024.1 1740074 R 342610 CDS YP_661025.1 109897770 4173605 complement(1741194..1741847) 1 NC_008228.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: glutathione S-transferase-like; KEGG: pha:PSHAb0337 maleylacetoacetate isomerase (MAAI) (glutathione S-transferase zeta 1) (GSTZ1-1); maleylacetoacetate isomerase 1741847 4173605 Patl_1448 Pseudoalteromonas atlantica T6c maleylacetoacetate isomerase YP_661025.1 1741194 R 342610 CDS YP_661026.1 109897771 4173606 1742355..1744754 1 NC_008228.1 PFAM: Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: cps:CPS_2378 TPR domain protein; hypothetical protein 1744754 4173606 Patl_1449 Pseudoalteromonas atlantica T6c hypothetical protein YP_661026.1 1742355 D 342610 CDS YP_661027.1 109897772 4173607 1744842..1745189 1 NC_008228.1 KEGG: vvy:VV1819 hypothetical protein; hypothetical protein 1745189 4173607 Patl_1450 Pseudoalteromonas atlantica T6c hypothetical protein YP_661027.1 1744842 D 342610 CDS YP_661028.1 109897773 4173608 complement(1745240..1745869) 1 NC_008228.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: vpa:VP1379 putative homoserine/homoserine lactone efflux protein; lysine exporter protein LysE/YggA 1745869 4173608 Patl_1451 Pseudoalteromonas atlantica T6c lysine exporter protein LysE/YggA YP_661028.1 1745240 R 342610 CDS YP_661029.1 109897774 4173609 1746252..1747838 1 NC_008228.1 PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: pha:PSHAa2018 cytochrome d terminal oxidase, polypeptide subunit I; cytochrome bd ubiquinol oxidase subunit I 1747838 4173609 Patl_1452 Pseudoalteromonas atlantica T6c cytochrome bd ubiquinol oxidase subunit I YP_661029.1 1746252 D 342610 CDS YP_661030.1 109897775 4173610 1747835..1748974 1 NC_008228.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: pha:PSHAa2019 cytochrome d terminal oxidase, polypeptide subunit II; cytochrome d ubiquinol oxidase subunit II 1748974 4173610 Patl_1453 Pseudoalteromonas atlantica T6c cytochrome d ubiquinol oxidase subunit II YP_661030.1 1747835 D 342610 CDS YP_661031.1 109897776 4173611 1749016..1749198 1 NC_008228.1 TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT-like; KEGG: pha:PSHAa2020 hypothetical protein; cyd operon protein YbgT 1749198 4173611 Patl_1454 Pseudoalteromonas atlantica T6c cyd operon protein YbgT YP_661031.1 1749016 D 342610 CDS YP_661032.1 109897777 4173612 1749224..1750975 1 NC_008228.1 PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase; KEGG: pha:PSHAa2021 cysteine transport (export) protein (ABC superfamily, membrane (N-terminal), atp_bind (C-terminal)); ABC transporter-like protein 1750975 4173612 Patl_1455 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_661032.1 1749224 D 342610 CDS YP_661033.1 109897778 4173613 1750968..1752842 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: pha:PSHAa2022 cysteine transport (export) protein (ABC superfamily, membrane (N-terminal), atp_bind (C-terminal)); ABC transporter-like protein 1752842 4173613 Patl_1456 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_661033.1 1750968 D 342610 CDS YP_661034.1 109897779 4173614 1753148..1753582 1 NC_008228.1 PFAM: OsmC-like protein; KEGG: bba:Bd0909 putative redox protein; OsmC-like protein 1753582 4173614 Patl_1457 Pseudoalteromonas atlantica T6c OsmC-like protein YP_661034.1 1753148 D 342610 CDS YP_661035.1 109897780 4173615 1753742..1753960 1 NC_008228.1 KEGG: cps:CPS_2574 hypothetical protein; hypothetical protein 1753960 4173615 Patl_1458 Pseudoalteromonas atlantica T6c hypothetical protein YP_661035.1 1753742 D 342610 CDS YP_661036.1 109897781 4173616 1754089..1754475 1 NC_008228.1 KEGG: xcv:XCV1857 putative glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein; putative glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein 1754475 4173616 Patl_1459 Pseudoalteromonas atlantica T6c putative glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein YP_661036.1 1754089 D 342610 CDS YP_661037.1 109897782 4173617 1755296..1756450 1 NC_008228.1 TIGRFAM: metal dependent phophohydrolase; SMART: Metal-dependent phosphohydrolase, HD region; KEGG: cps:CPS_0287 hypothetical protein; metal dependent phosphohydrolase 1756450 4173617 Patl_1460 Pseudoalteromonas atlantica T6c metal dependent phosphohydrolase YP_661037.1 1755296 D 342610 CDS YP_661038.1 109897783 4173618 complement(1756496..1756894) 1 NC_008228.1 KEGG: vvy:VVA1407 hypothetical protein; hypothetical protein 1756894 4173618 Patl_1461 Pseudoalteromonas atlantica T6c hypothetical protein YP_661038.1 1756496 R 342610 CDS YP_661039.1 109897784 4173619 complement(1757031..1757792) 1 NC_008228.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_A0450 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1757792 4173619 Patl_1462 Pseudoalteromonas atlantica T6c enoyl-CoA hydratase/isomerase YP_661039.1 1757031 R 342610 CDS YP_661040.1 109897785 4173620 complement(1757832..1758281) 1 NC_008228.1 PFAM: regulatory protein, MarR; KEGG: bur:Bcep18194_B1526 transcriptional regulator, MarR family; MarR family transcriptional regulator 1758281 4173620 Patl_1463 Pseudoalteromonas atlantica T6c MarR family transcriptional regulator YP_661040.1 1757832 R 342610 CDS YP_661041.1 109897786 4172190 1758500..1759486 1 NC_008228.1 KEGG: cps:CPS_0808 hypothetical protein; hypothetical protein 1759486 4172190 Patl_1464 Pseudoalteromonas atlantica T6c hypothetical protein YP_661041.1 1758500 D 342610 CDS YP_661042.1 109897787 4172191 1759667..1759972 1 NC_008228.1 hypothetical protein 1759972 4172191 Patl_1465 Pseudoalteromonas atlantica T6c hypothetical protein YP_661042.1 1759667 D 342610 CDS YP_661043.1 109897788 4172192 complement(1760258..1760716) 1 NC_008228.1 hypothetical protein 1760716 4172192 Patl_1466 Pseudoalteromonas atlantica T6c hypothetical protein YP_661043.1 1760258 R 342610 CDS YP_661044.1 109897789 4172193 1760764..1762218 1 NC_008228.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: ade:Adeh_4242 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 1762218 4172193 Patl_1467 Pseudoalteromonas atlantica T6c phospholipase D/transphosphatidylase YP_661044.1 1760764 D 342610 CDS YP_661045.1 109897790 4172194 1762277..1763050 1 NC_008228.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bba:Bd1711 hypothetical protein; hypothetical protein 1763050 4172194 Patl_1468 Pseudoalteromonas atlantica T6c hypothetical protein YP_661045.1 1762277 D 342610 CDS YP_661046.1 109897791 4172195 1763249..1763680 1 NC_008228.1 PFAM: UspA; KEGG: son:SO3681 universal stress protein family; hypothetical protein 1763680 4172195 Patl_1469 Pseudoalteromonas atlantica T6c hypothetical protein YP_661046.1 1763249 D 342610 CDS YP_661047.1 109897792 4172196 1764156..1764362 1 NC_008228.1 KEGG: ilo:IL2066 hypothetical protein; hypothetical protein 1764362 4172196 Patl_1470 Pseudoalteromonas atlantica T6c hypothetical protein YP_661047.1 1764156 D 342610 CDS YP_661048.1 109897793 4172197 1764364..1765140 1 NC_008228.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: dps:DP2240 probable methionine aminopeptidase, MAP; methionine aminopeptidase 1765140 4172197 Patl_1471 Pseudoalteromonas atlantica T6c methionine aminopeptidase YP_661048.1 1764364 D 342610 CDS YP_661049.1 109897794 4172198 complement(1765588..1766283) 1 NC_008228.1 PFAM: zinc/iron permease; KEGG: dar:Daro_1606 zinc transporter ZIP; zinc/iron permease 1766283 4172198 Patl_1472 Pseudoalteromonas atlantica T6c zinc/iron permease YP_661049.1 1765588 R 342610 CDS YP_661050.1 109897795 4172199 complement(1766713..1768419) 1 NC_008228.1 KEGG: tcx:Tcr_0865 hypothetical protein; hypothetical protein 1768419 4172199 Patl_1473 Pseudoalteromonas atlantica T6c hypothetical protein YP_661050.1 1766713 R 342610 CDS YP_661051.1 109897796 4172200 complement(1768479..1770317) 1 NC_008228.1 KEGG: hma:rrnAC0761 hypothetical protein; hypothetical protein 1770317 4172200 Patl_1474 Pseudoalteromonas atlantica T6c hypothetical protein YP_661051.1 1768479 R 342610 CDS YP_661052.1 109897797 4172201 complement(1770721..1772658) 1 NC_008228.1 PFAM: FG-GAP; KEGG: gvi:gll3447 hypothetical protein; hypothetical protein 1772658 4172201 Patl_1475 Pseudoalteromonas atlantica T6c hypothetical protein YP_661052.1 1770721 R 342610 CDS YP_661053.1 109897798 4172202 complement(1773350..1773733) 1 NC_008228.1 PFAM: protein of unknown function DUF1486; KEGG: fnu:FN1222 hypothetical protein; hypothetical protein 1773733 4172202 Patl_1476 Pseudoalteromonas atlantica T6c hypothetical protein YP_661053.1 1773350 R 342610 CDS YP_661054.1 109897799 4172203 complement(1774569..1775093) 1 NC_008228.1 PFAM: Endoribonuclease L-PSP; KEGG: atc:AGR_L_3105 hypothetical protein; endoribonuclease L-PSP 1775093 4172203 Patl_1477 Pseudoalteromonas atlantica T6c endoribonuclease L-PSP YP_661054.1 1774569 R 342610 CDS YP_661055.1 109897800 4172204 complement(1775157..1776482) 1 NC_008228.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aminotransferase, class V; KEGG: xcb:XC_0411 isopenicillin N epimerase; twin-arginine translocation pathway signal protein 1776482 4172204 Patl_1478 Pseudoalteromonas atlantica T6c twin-arginine translocation pathway signal protein YP_661055.1 1775157 R 342610 CDS YP_661056.1 109897801 4172205 complement(1776910..1778637) 1 NC_008228.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase LeuA allosteric (dimerisation) domain; KEGG: rso:RSp0322 2-isopropylmalate synthase; 2-isopropylmalate synthase 1778637 4172205 Patl_1479 Pseudoalteromonas atlantica T6c 2-isopropylmalate synthase YP_661056.1 1776910 R 342610 CDS YP_661057.1 109897802 4172206 1778794..1779255 1 NC_008228.1 PFAM: regulatory proteins, AsnC/Lrp; KEGG: dar:Daro_0512 regulatory proteins, AsnC/Lrp; AsnC family transcriptional regulator 1779255 4172206 Patl_1480 Pseudoalteromonas atlantica T6c AsnC family transcriptional regulator YP_661057.1 1778794 D 342610 CDS YP_661058.1 109897803 4172207 complement(1779642..1780790) 1 NC_008228.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: ilo:IL0796 alcohol dehydrogenase; iron-containing alcohol dehydrogenase 1780790 4172207 Patl_1481 Pseudoalteromonas atlantica T6c iron-containing alcohol dehydrogenase YP_661058.1 1779642 R 342610 CDS YP_661059.1 109897804 4172208 complement(1781096..1782031) 1 NC_008228.1 hypothetical protein 1782031 4172208 Patl_1482 Pseudoalteromonas atlantica T6c hypothetical protein YP_661059.1 1781096 R 342610 CDS YP_661060.1 109897805 4172209 complement(1782092..1782739) 1 NC_008228.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: vpa:VP1743 hypothetical protein; lysine exporter protein LysE/YggA 1782739 4172209 Patl_1483 Pseudoalteromonas atlantica T6c lysine exporter protein LysE/YggA YP_661060.1 1782092 R 342610 CDS YP_661061.1 109897806 4172210 complement(1782924..1783529) 1 NC_008228.1 KEGG: mca:MCA0409 lipoprotein, putative; hypothetical protein 1783529 4172210 Patl_1484 Pseudoalteromonas atlantica T6c hypothetical protein YP_661061.1 1782924 R 342610 CDS YP_661062.1 109897807 4172211 complement(1783550..1784677) 1 NC_008228.1 PFAM: aminotransferase, class I and II; KEGG: blo:BL1741 probable aspartate aminotransferase; class I and II aminotransferase 1784677 4172211 Patl_1485 Pseudoalteromonas atlantica T6c class I and II aminotransferase YP_661062.1 1783550 R 342610 CDS YP_661063.1 109897808 4172212 1785088..1787121 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: hch:HCH_05457 outer membrane receptor for ferrienterochelin and colicins; TonB-dependent receptor, plug 1787121 4172212 Patl_1486 Pseudoalteromonas atlantica T6c TonB-dependent receptor, plug YP_661063.1 1785088 D 342610 CDS YP_661064.1 109897809 4172213 1787150..1788274 1 NC_008228.1 KEGG: hch:HCH_05459 hypothetical protein; hypothetical protein 1788274 4172213 Patl_1487 Pseudoalteromonas atlantica T6c hypothetical protein YP_661064.1 1787150 D 342610 CDS YP_661065.1 109897810 4172214 1788434..1789366 1 NC_008228.1 PFAM: periplasmic binding protein; KEGG: ilo:IL0113 ABC-type hemin transport system, periplasmic component; periplasmic binding protein 1789366 4172214 Patl_1488 Pseudoalteromonas atlantica T6c periplasmic binding protein YP_661065.1 1788434 D 342610 CDS YP_661066.1 109897811 4172215 1789363..1790484 1 NC_008228.1 PFAM: transport system permease protein; KEGG: ilo:IL0114 ABC-type hemin transport system, pemease component; transport system permease 1790484 4172215 Patl_1489 Pseudoalteromonas atlantica T6c transport system permease YP_661066.1 1789363 D 342610 CDS YP_661067.1 109897812 4172216 1790490..1791326 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: hch:HCH_05463 ABC-type hemin transport system, ATPase component; ABC transporter-like protein 1791326 4172216 Patl_1490 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_661067.1 1790490 D 342610 CDS YP_661068.1 109897813 4172217 1791360..1792094 1 NC_008228.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: ilo:IL0116 uncharacterized metal-binding protein; pyridoxamine 5'-phosphate oxidase-like protein 1792094 4172217 Patl_1491 Pseudoalteromonas atlantica T6c pyridoxamine 5'-phosphate oxidase-like protein YP_661068.1 1791360 D 342610 CDS YP_661069.1 109897814 4172218 complement(1792239..1792799) 1 NC_008228.1 PFAM: glycoside hydrolase, family 24; KEGG: cvi:CV0727 probable phage-related lysozyme; glycoside hydrolase 1792799 4172218 Patl_1492 Pseudoalteromonas atlantica T6c glycoside hydrolase YP_661069.1 1792239 R 342610 CDS YP_661070.1 109897815 4172219 1793100..1793489 1 NC_008228.1 PFAM: Ion transport 2; KEGG: ppu:PP3293 hypothetical protein; Ion transport 2 1793489 4172219 Patl_1493 Pseudoalteromonas atlantica T6c Ion transport 2 YP_661070.1 1793100 D 342610 CDS YP_661071.1 109897816 4172220 1793787..1794311 1 NC_008228.1 hypothetical protein 1794311 4172220 Patl_1494 Pseudoalteromonas atlantica T6c hypothetical protein YP_661071.1 1793787 D 342610 CDS YP_661072.1 109897817 4172221 complement(1794544..1795512) 1 NC_008228.1 PFAM: beta-lactamase-like; KEGG: cps:CPS_1284 metallo-beta-lactamase family protein; beta-lactamase-like protein 1795512 4172221 Patl_1495 Pseudoalteromonas atlantica T6c beta-lactamase-like protein YP_661072.1 1794544 R 342610 CDS YP_661073.1 109897818 4172222 complement(1795698..1796423) 1 NC_008228.1 PFAM: Abortive infection protein; KEGG: bcz:BCZK2732 CAAX amino terminal protease family; abortive infection protein 1796423 4172222 Patl_1496 Pseudoalteromonas atlantica T6c abortive infection protein YP_661073.1 1795698 R 342610 CDS YP_661074.1 109897819 4172223 1796522..1797439 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: lpp:lpp0348 hypothetical protein; LysR family transcriptional regulator 1797439 4172223 Patl_1497 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_661074.1 1796522 D 342610 CDS YP_661075.1 109897820 4172225 1798091..1798948 1 NC_008228.1 hypothetical protein 1798948 4172225 Patl_1499 Pseudoalteromonas atlantica T6c hypothetical protein YP_661075.1 1798091 D 342610 CDS YP_661076.1 109897821 4172226 complement(1799244..1799792) 1 NC_008228.1 hypothetical protein 1799792 4172226 Patl_1500 Pseudoalteromonas atlantica T6c hypothetical protein YP_661076.1 1799244 R 342610 CDS YP_661077.1 109897822 4172227 1800877..1805007 1 NC_008228.1 PFAM: PKD domain containing protein peptidase-like; KEGG: ade:Adeh_2204 PKD; peptidase-like protein 1805007 4172227 Patl_1501 Pseudoalteromonas atlantica T6c peptidase-like protein YP_661077.1 1800877 D 342610 CDS YP_661078.1 109897823 4172228 1805125..1805736 1 NC_008228.1 hypothetical protein 1805736 4172228 Patl_1502 Pseudoalteromonas atlantica T6c hypothetical protein YP_661078.1 1805125 D 342610 CDS YP_661079.1 109897824 4172952 complement(1805833..1808088) 1 NC_008228.1 PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: dre:337685 O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase); hypothetical protein 1808088 4172952 Patl_1503 Pseudoalteromonas atlantica T6c hypothetical protein YP_661079.1 1805833 R 342610 CDS YP_661080.1 109897825 4172953 1808281..1808664 1 NC_008228.1 PFAM: protein of unknown function DUF1330; KEGG: bja:blr8010 hypothetical protein; hypothetical protein 1808664 4172953 Patl_1504 Pseudoalteromonas atlantica T6c hypothetical protein YP_661080.1 1808281 D 342610 CDS YP_661081.1 109897826 4172954 1808668..1809723 1 NC_008228.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ana:all5023 probable hydrolase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1809723 4172954 Patl_1505 Pseudoalteromonas atlantica T6c nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_661081.1 1808668 D 342610 CDS YP_661082.1 109897827 4172955 1809716..1811134 1 NC_008228.1 PFAM: aldehyde dehydrogenase; KEGG: ana:all5022 aldehyde dehydrogenase; aldehyde dehydrogenase 1811134 4172955 Patl_1506 Pseudoalteromonas atlantica T6c aldehyde dehydrogenase YP_661082.1 1809716 D 342610 CDS YP_661083.1 109897828 4172956 complement(1811470..1812735) 1 NC_008228.1 PFAM: major facilitator superfamily MFS_1; KEGG: bcl:ABC0649 major facilitator (MFS) superfamily protein; major facilitator superfamily transporter 1812735 4172956 Patl_1507 Pseudoalteromonas atlantica T6c major facilitator superfamily transporter YP_661083.1 1811470 R 342610 CDS YP_661084.1 109897829 4172957 complement(1812819..1813124) 1 NC_008228.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 1813124 4172957 Patl_1508 Pseudoalteromonas atlantica T6c YciI-like protein YP_661084.1 1812819 R 342610 CDS YP_661085.1 109897830 4172958 complement(1813136..1813891) 1 NC_008228.1 PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: reu:Reut_B4699 regulatory protein GntR, HTH:UbiC transcription regulator-associated; GntR family transcriptional regulator 1813891 4172958 Patl_1509 Pseudoalteromonas atlantica T6c GntR family transcriptional regulator YP_661085.1 1813136 R 342610 CDS YP_661086.1 109897831 4172959 1813984..1815333 1 NC_008228.1 PFAM: MmgE/PrpD; KEGG: pae:PA0881 hypothetical protein; MmgE/PrpD 1815333 4172959 Patl_1510 Pseudoalteromonas atlantica T6c MmgE/PrpD YP_661086.1 1813984 D 342610 CDS YP_661087.1 109897832 4172960 1815337..1816755 1 NC_008228.1 PFAM: MmgE/PrpD; KEGG: bpe:BP3842 hypothetical protein; MmgE/PrpD 1816755 4172960 Patl_1511 Pseudoalteromonas atlantica T6c MmgE/PrpD YP_661087.1 1815337 D 342610 CDS YP_661088.1 109897833 4172961 1816877..1818235 1 NC_008228.1 KEGG: bfs:BF1700 putative phenylacetate-coenzyme A ligase; coenzyme F390 synthetase-like protein 1818235 4172961 Patl_1512 Pseudoalteromonas atlantica T6c coenzyme F390 synthetase-like protein YP_661088.1 1816877 D 342610 CDS YP_661089.1 109897834 4172962 1818235..1819581 1 NC_008228.1 PFAM: Amidase; KEGG: cpj:CPj0003 Glu tRNA Gln amidotransferae (A subunit); amidase 1819581 4172962 Patl_1513 Pseudoalteromonas atlantica T6c amidase YP_661089.1 1818235 D 342610 CDS YP_661090.1 109897835 4172963 complement(1819845..1820228) 1 NC_008228.1 hypothetical protein 1820228 4172963 Patl_1514 Pseudoalteromonas atlantica T6c hypothetical protein YP_661090.1 1819845 R 342610 CDS YP_661091.1 109897836 4172964 complement(1820225..1820539) 1 NC_008228.1 hypothetical protein 1820539 4172964 Patl_1515 Pseudoalteromonas atlantica T6c hypothetical protein YP_661091.1 1820225 R 342610 CDS YP_661092.1 109897837 4172965 1820659..1821555 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: mlo:mll1582 probable transcriptional regulator; LysR family transcriptional regulator 1821555 4172965 Patl_1516 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_661092.1 1820659 D 342610 CDS YP_661093.1 109897838 4172966 complement(1821989..1822453) 1 NC_008228.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sme:SMc04442 putative acetyltransferase protein; N-acetyltransferase GCN5 1822453 4172966 Patl_1517 Pseudoalteromonas atlantica T6c N-acetyltransferase GCN5 YP_661093.1 1821989 R 342610 CDS YP_661094.1 109897839 4172967 complement(1822628..1824100) 1 NC_008228.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20 peptidase dimerisation; KEGG: eli:ELI_13895 hypothetical protein; amidohydrolase 1824100 4172967 Patl_1518 Pseudoalteromonas atlantica T6c amidohydrolase YP_661094.1 1822628 R 342610 CDS YP_661095.1 109897840 4172968 complement(1824159..1825355) 1 NC_008228.1 PFAM: peptidase M14, carboxypeptidase A; KEGG: cps:CPS_2692 zinc carboxypeptidase family protein; peptidase M14, carboxypeptidase A 1825355 4172968 Patl_1519 Pseudoalteromonas atlantica T6c peptidase M14, carboxypeptidase A YP_661095.1 1824159 R 342610 CDS YP_661096.1 109897841 4172969 complement(1825402..1828569) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ilo:IL1415 outer membrane protein; TonB-dependent receptor 1828569 4172969 Patl_1520 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_661096.1 1825402 R 342610 CDS YP_661097.1 109897842 4172970 complement(1828656..1829666) 1 NC_008228.1 PFAM: FecR protein; KEGG: cps:CPS_0244 putative regulatory protein; putative FecR protein 1829666 4172970 Patl_1521 Pseudoalteromonas atlantica T6c putative FecR protein YP_661097.1 1828656 R 342610 CDS YP_661098.1 109897843 4172971 complement(1829663..1830232) 1 NC_008228.1 PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: pfl:PFL_3156 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1830232 4172971 Patl_1522 Pseudoalteromonas atlantica T6c ECF subfamily RNA polymerase sigma-24 factor YP_661098.1 1829663 R 342610 CDS YP_661099.1 109897844 4172972 1830404..1830946 1 NC_008228.1 PFAM: NUDIX hydrolase; KEGG: vpa:VPA0218 hypothetical protein; NUDIX hydrolase 1830946 4172972 Patl_1523 Pseudoalteromonas atlantica T6c NUDIX hydrolase YP_661099.1 1830404 D 342610 CDS YP_661100.1 109897845 4172973 1831169..1831828 1 NC_008228.1 PFAM: thiopurine S-methyltransferase; KEGG: cps:CPS_3096 thiopurine S-methyltransferase family protein; thiopurine S-methyltransferase 1831828 4172973 Patl_1524 Pseudoalteromonas atlantica T6c thiopurine S-methyltransferase YP_661100.1 1831169 D 342610 CDS YP_661101.1 109897846 4172974 complement(1831880..1832203) 1 NC_008228.1 hypothetical protein 1832203 4172974 Patl_1525 Pseudoalteromonas atlantica T6c hypothetical protein YP_661101.1 1831880 R 342610 CDS YP_661102.1 109897847 4172975 complement(1832200..1833231) 1 NC_008228.1 KEGG: hch:HCH_05761 hypothetical protein; hypothetical protein 1833231 4172975 Patl_1526 Pseudoalteromonas atlantica T6c hypothetical protein YP_661102.1 1832200 R 342610 CDS YP_661103.1 109897848 4172976 complement(1833368..1834060) 1 NC_008228.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: yps:YPTB2818 two-component system response regulator; two component transcriptional regulator 1834060 4172976 Patl_1527 Pseudoalteromonas atlantica T6c two component transcriptional regulator YP_661103.1 1833368 R 342610 CDS YP_661104.1 109897849 4172977 complement(1834057..1835508) 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: gsu:GSU3119 sensor histidine kinase; sensor signal transduction histidine kinase 1835508 4172977 Patl_1528 Pseudoalteromonas atlantica T6c sensor signal transduction histidine kinase YP_661104.1 1834057 R 342610 CDS YP_661105.1 109897850 4172978 1835646..1835894 1 NC_008228.1 KEGG: pca:Pcar_0362 hypothetical protein; hypothetical protein 1835894 4172978 Patl_1529 Pseudoalteromonas atlantica T6c hypothetical protein YP_661105.1 1835646 D 342610 CDS YP_661106.1 109897851 4172979 1836011..1836355 1 NC_008228.1 hypothetical protein 1836355 4172979 Patl_1530 Pseudoalteromonas atlantica T6c hypothetical protein YP_661106.1 1836011 D 342610 CDS YP_661107.1 109897852 4172980 complement(1836496..1837269) 1 NC_008228.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: pae:PA3540 GDP-mannose 6-dehydrogenase AlgD; UDP-glucose/GDP-mannose dehydrogenase 1837269 4172980 Patl_1531 Pseudoalteromonas atlantica T6c UDP-glucose/GDP-mannose dehydrogenase YP_661107.1 1836496 R 342610 CDS YP_661108.1 109897853 4172981 1837569..1838114 1 NC_008228.1 PFAM: 4-vinyl reductase, 4VR; KEGG: cps:CPS_3609 hypothetical protein; 4-vinyl reductase, 4VR 1838114 4172981 Patl_1532 Pseudoalteromonas atlantica T6c 4-vinyl reductase, 4VR YP_661108.1 1837569 D 342610 CDS YP_661109.1 109897854 4172982 1838107..1839600 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: cps:CPS_3608 sensor histidine kinase; histidine kinase 1839600 4172982 Patl_1533 Pseudoalteromonas atlantica T6c histidine kinase YP_661109.1 1838107 D 342610 CDS YP_661110.1 109897855 4172983 complement(1839578..1840897) 1 NC_008228.1 PFAM: response regulator receiver; KEGG: son:SO2541 response regulator; response regulator receiver protein 1840897 4172983 Patl_1534 Pseudoalteromonas atlantica T6c response regulator receiver protein YP_661110.1 1839578 R 342610 CDS YP_661111.1 109897856 4172984 complement(1840935..1842635) 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: hch:HCH_04025 signal transduction histidine kinase; sensor signal transduction histidine kinase 1842635 4172984 Patl_1535 Pseudoalteromonas atlantica T6c sensor signal transduction histidine kinase YP_661111.1 1840935 R 342610 CDS YP_661112.1 109897857 4172985 complement(1842674..1843498) 1 NC_008228.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: vch:VC1089 periplasmic binding protein-related protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 1843498 4172985 Patl_1536 Pseudoalteromonas atlantica T6c phosphonate ABC transporter periplasmic phosphonate-binding protein YP_661112.1 1842674 R 342610 CDS YP_661113.1 109897858 4172986 complement(1843573..1844391) 1 NC_008228.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein, MerR response regulator receiver; KEGG: son:SO2540 response regulator; response regulator receiver protein 1844391 4172986 Patl_1537 Pseudoalteromonas atlantica T6c response regulator receiver protein YP_661113.1 1843573 R 342610 CDS YP_661114.1 109897859 4172987 1845413..1847104 1 NC_008228.1 PFAM: EAL response regulator receiver; KEGG: vvy:VVA0651 GGDEF family protein; response regulator receiver modulated diguanylate phosphodiesterase 1847104 4172987 Patl_1538 Pseudoalteromonas atlantica T6c response regulator receiver modulated diguanylate phosphodiesterase YP_661114.1 1845413 D 342610 CDS YP_661115.1 109897860 4172988 complement(1847101..1847661) 1 NC_008228.1 PFAM: Smr protein/MutS2; KEGG: cps:CPS_3153 hypothetical protein; Smr protein/MutS2 1847661 4172988 Patl_1539 Pseudoalteromonas atlantica T6c Smr protein/MutS2 YP_661115.1 1847101 R 342610 CDS YP_661116.1 109897861 4172989 1847774..1848703 1 NC_008228.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1848703 4172989 Patl_1540 Pseudoalteromonas atlantica T6c N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_661116.1 1847774 D 342610 CDS YP_661117.1 109897862 4172990 1848774..1849874 1 NC_008228.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1849874 4172990 Patl_1541 Pseudoalteromonas atlantica T6c chorismate synthase YP_661117.1 1848774 D 342610 CDS YP_661118.1 109897863 4172534 1849925..1851061 1 NC_008228.1 PFAM: nucleoside:H+ symporter major facilitator superfamily MFS_1; KEGG: cps:CPS_3149 putative membrane protein; major facilitator superfamily transporter 1851061 4172534 Patl_1542 Pseudoalteromonas atlantica T6c major facilitator superfamily transporter YP_661118.1 1849925 D 342610 CDS YP_661119.1 109897864 4172535 1851381..1851587 1 NC_008228.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: cps:CPS_4529 cold-shock DNA-binding domain family protein; cold-shock DNA-binding domain-containing protein 1851587 4172535 Patl_1543 Pseudoalteromonas atlantica T6c cold-shock DNA-binding domain-containing protein YP_661119.1 1851381 D 342610 CDS YP_661120.1 109897865 4172536 complement(1851714..1852763) 1 NC_008228.1 converts asparagine to aspartate and ammonia; asparaginase 1852763 ansA 4172536 ansA Pseudoalteromonas atlantica T6c asparaginase YP_661120.1 1851714 R 342610 CDS YP_661121.1 109897866 4172537 complement(1852837..1853823) 1 NC_008228.1 hypothetical protein 1853823 4172537 Patl_1545 Pseudoalteromonas atlantica T6c hypothetical protein YP_661121.1 1852837 R 342610 CDS YP_661122.1 109897867 4172538 complement(1853830..1854567) 1 NC_008228.1 PFAM: dienelactone hydrolase; KEGG: cps:CPS_4005 carboxymethylenebutenolidase family protein; dienelactone hydrolase 1854567 4172538 Patl_1546 Pseudoalteromonas atlantica T6c dienelactone hydrolase YP_661122.1 1853830 R 342610 CDS YP_661123.1 109897868 4172539 1854714..1854995 1 NC_008228.1 PFAM: protein of unknown function DUF1255; KEGG: pfl:PFL_4201 hypothetical protein; hypothetical protein 1854995 4172539 Patl_1547 Pseudoalteromonas atlantica T6c hypothetical protein YP_661123.1 1854714 D 342610 CDS YP_661124.1 109897869 4172540 1855036..1855383 1 NC_008228.1 KEGG: cps:CPS_4834 hypothetical protein; hypothetical protein 1855383 4172540 Patl_1548 Pseudoalteromonas atlantica T6c hypothetical protein YP_661124.1 1855036 D 342610 CDS YP_661125.1 109897870 4172541 1855519..1855803 1 NC_008228.1 KEGG: cps:CPS_2550 hypothetical protein; hypothetical protein 1855803 4172541 Patl_1549 Pseudoalteromonas atlantica T6c hypothetical protein YP_661125.1 1855519 D 342610 CDS YP_661126.1 109897871 4172542 complement(1855822..1856346) 1 NC_008228.1 PFAM: protein of unknown function DUF985; KEGG: pfo:Pfl_2733 protein of unknown function DUF985; hypothetical protein 1856346 4172542 Patl_1550 Pseudoalteromonas atlantica T6c hypothetical protein YP_661126.1 1855822 R 342610 CDS YP_661127.1 109897872 4172543 complement(1856534..1856818) 1 NC_008228.1 KEGG: cps:CPS_2161 hypothetical protein; hypothetical protein 1856818 4172543 Patl_1551 Pseudoalteromonas atlantica T6c hypothetical protein YP_661127.1 1856534 R 342610 CDS YP_661128.1 109897873 4172544 complement(1856918..1857649) 1 NC_008228.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: cps:CPS_4968 peptidyl-prolyl cis-trans isomerase, cyclophilin-type; cyclophilin type peptidyl-prolyl cis-trans isomerase 1857649 4172544 Patl_1552 Pseudoalteromonas atlantica T6c cyclophilin type peptidyl-prolyl cis-trans isomerase YP_661128.1 1856918 R 342610 CDS YP_661129.1 109897874 4172545 complement(1858212..1859174) 1 NC_008228.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 1859174 4172545 Patl_1553 Pseudoalteromonas atlantica T6c lipoyl synthase YP_661129.1 1858212 R 342610 CDS YP_661130.1 109897875 4172546 complement(1859167..1859820) 1 NC_008228.1 TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: pha:PSHAa1020 lipoate-protein ligase B; lipoate-protein ligase B 1859820 4172546 Patl_1554 Pseudoalteromonas atlantica T6c lipoate-protein ligase B YP_661130.1 1859167 R 342610 CDS YP_661131.1 109897876 4172547 complement(1859882..1860145) 1 NC_008228.1 PFAM: protein of unknown function DUF493; KEGG: ilo:IL0958 hypothetical protein; hypothetical protein 1860145 4172547 Patl_1555 Pseudoalteromonas atlantica T6c hypothetical protein YP_661131.1 1859882 R 342610 CDS YP_661132.1 109897877 4172548 complement(1860166..1861338) 1 NC_008228.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 Penicillin-binding protein 5-like; KEGG: cps:CPS_1712 D-alanyl-D-alanine carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 1861338 4172548 Patl_1556 Pseudoalteromonas atlantica T6c serine-type D-Ala-D-Ala carboxypeptidase YP_661132.1 1860166 R 342610 CDS YP_661133.1 109897878 4172549 complement(1861515..1862480) 1 NC_008228.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A Sporulation related; KEGG: cps:CPS_1713 putative rare lipoprotein A; rare lipoprotein A 1862480 4172549 Patl_1557 Pseudoalteromonas atlantica T6c rare lipoprotein A YP_661133.1 1861515 R 342610 CDS YP_661134.1 109897879 4172550 complement(1862470..1863588) 1 NC_008228.1 TIGRFAM: lytic murein transglycosylase B; KEGG: ilo:IL0955 membrane-bound lytic murein transglycosylase B; lytic murein transglycosylase B 1863588 4172550 Patl_1558 Pseudoalteromonas atlantica T6c lytic murein transglycosylase B YP_661134.1 1862470 R 342610 CDS YP_661135.1 109897880 4172551 complement(1863639..1864763) 1 NC_008228.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: cps:CPS_1714 rod shape-determining protein RodA; rod shape-determining protein RodA 1864763 4172551 Patl_1559 Pseudoalteromonas atlantica T6c rod shape-determining protein RodA YP_661135.1 1863639 R 342610 CDS YP_661136.1 109897881 4172552 complement(1864779..1866710) 1 NC_008228.1 PFAM: penicillin-binding protein, transpeptidase Penicillin-binding protein, dimerisation domain; KEGG: cps:CPS_1715 penicillin-binding protein; peptidoglycan glycosyltransferase 1866710 4172552 Patl_1560 Pseudoalteromonas atlantica T6c peptidoglycan glycosyltransferase YP_661136.1 1864779 R 342610 CDS YP_661137.1 109897882 4172553 complement(1866713..1867183) 1 NC_008228.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 1867183 4172553 Patl_1561 Pseudoalteromonas atlantica T6c rRNA large subunit methyltransferase YP_661137.1 1866713 R 342610 CDS YP_661138.1 109897883 4172554 complement(1867230..1867547) 1 NC_008228.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: son:SO1170 iojap domain protein; iojap family protein 1867547 4172554 Patl_1562 Pseudoalteromonas atlantica T6c iojap family protein YP_661138.1 1867230 R 342610 CDS YP_661139.1 109897884 4172555 complement(1867586..1868245) 1 NC_008228.1 KEGG: yps:YPTB1100 nicotinic acid mononucleotide adenyltransferase; TIGRFAM: cytidyltransferase-related domain nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 1868245 4172555 Patl_1563 Pseudoalteromonas atlantica T6c nicotinate (nicotinamide) nucleotide adenylyltransferase YP_661139.1 1867586 R 342610 CDS YP_661140.1 109897885 4172556 complement(1868242..1869264) 1 NC_008228.1 KEGG: pha:PSHAa1029 DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; DNA polymerase III subunit delta 1869264 4172556 Patl_1564 Pseudoalteromonas atlantica T6c DNA polymerase III subunit delta YP_661140.1 1868242 R 342610 CDS YP_661141.1 109897886 4172557 complement(1869264..1869785) 1 NC_008228.1 PFAM: Rare lipoprotein B; KEGG: cps:CPS_1721 rare lipoprotein B; rare lipoprotein B 1869785 4172557 Patl_1565 Pseudoalteromonas atlantica T6c rare lipoprotein B YP_661141.1 1869264 R 342610 CDS YP_661142.1 109897887 4172558 complement(1869801..1872413) 1 NC_008228.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 1872413 leuS 4172558 leuS Pseudoalteromonas atlantica T6c leucyl-tRNA synthetase YP_661142.1 1869801 R 342610 CDS YP_661143.1 109897888 4172559 1873202..1875589 1 NC_008228.1 PFAM: peptidase S16, lon-like; KEGG: pha:PSHAa1033 ATP-dependent protease; peptidase S16, lon-like 1875589 4172559 Patl_1567 Pseudoalteromonas atlantica T6c peptidase S16, lon-like YP_661143.1 1873202 D 342610 CDS YP_661144.1 109897889 4172560 1875674..1876168 1 NC_008228.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1995 peptidyl-prolyl cis-trans isomerase, FkbP family; FKBP-type peptidylprolyl isomerase 1876168 4172560 Patl_1568 Pseudoalteromonas atlantica T6c FKBP-type peptidylprolyl isomerase YP_661144.1 1875674 D 342610 CDS YP_661145.1 109897890 4172561 complement(1876292..1876651) 1 NC_008228.1 PFAM: protein of unknown function UPF0044; KEGG: ppr:PBPRA0602 putative RNA-binding protein containing KH domain; hypothetical protein 1876651 4172561 Patl_1569 Pseudoalteromonas atlantica T6c hypothetical protein YP_661145.1 1876292 R 342610 CDS YP_661146.1 109897891 4172562 1876684..1877313 1 NC_008228.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: vfi:VF0478 23S rRNA Um2552 2'-O-methyltransferase; ribosomal RNA methyltransferase RrmJ/FtsJ 1877313 4172562 Patl_1570 Pseudoalteromonas atlantica T6c ribosomal RNA methyltransferase RrmJ/FtsJ YP_661146.1 1876684 D 342610 CDS YP_661147.1 109897892 4172563 1877366..1879336 1 NC_008228.1 KEGG: ppr:PBPRA0604 putative cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41 AAA ATPase, central region peptidase M41, FtsH extracellular ATPase associated with various cellular activities, AAA_5; SMART: ATPase; ATP-dependent metalloprotease FtsH 1879336 4172563 Patl_1571 Pseudoalteromonas atlantica T6c ATP-dependent metalloprotease FtsH YP_661147.1 1877366 D 342610 CDS YP_661148.1 109897893 4172564 1879422..1880246 1 NC_008228.1 KEGG: yps:YPTB0475 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase 1880246 4172564 Patl_1572 Pseudoalteromonas atlantica T6c dihydropteroate synthase YP_661148.1 1879422 D 342610 CDS YP_661149.1 109897894 4172565 1880249..1881592 1 NC_008228.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1881592 glmM 4172565 glmM Pseudoalteromonas atlantica T6c phosphoglucosamine mutase YP_661149.1 1880249 D 342610 CDS YP_661150.1 109897895 4172566 1881722..1882471 1 NC_008228.1 PFAM: triosephosphate isomerase; KEGG: tcx:Tcr_0815 triosephosphate isomerase; triosephosphate isomerase 1882471 4172566 Patl_1574 Pseudoalteromonas atlantica T6c triosephosphate isomerase YP_661150.1 1881722 D 342610 CDS YP_661151.1 109897896 4172567 1882481..1882852 1 NC_008228.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: pha:PSHAa0874 protein-export membrane protein SecG(general secretory pathway); preprotein translocase subunit SecG 1882852 secG 4172567 secG Pseudoalteromonas atlantica T6c preprotein translocase subunit SecG YP_661151.1 1882481 D 342610 CDS YP_661152.1 109897897 4172569 1883052..1884197 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMb20630 putative sugar uptake ABC transporter ATP-binding protein; ABC transporter-like protein 1884197 4172569 Patl_1576 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_661152.1 1883052 D 342610 CDS YP_661153.1 109897898 4172570 1884691..1884942 1 NC_008228.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1884942 rpsP 4172570 rpsP Pseudoalteromonas atlantica T6c 30S ribosomal protein S16 YP_661153.1 1884691 D 342610 CDS YP_661154.1 109897899 4172571 1884973..1885503 1 NC_008228.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1885503 rimM 4172571 rimM Pseudoalteromonas atlantica T6c 16S rRNA-processing protein RimM YP_661154.1 1884973 D 342610 CDS YP_661155.1 109897900 4173833 1885503..1886300 1 NC_008228.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1886300 trmD 4173833 trmD Pseudoalteromonas atlantica T6c tRNA (guanine-N(1)-)-methyltransferase YP_661155.1 1885503 D 342610 CDS YP_661156.1 109897901 4173834 1886290..1886652 1 NC_008228.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1886652 rplS 4173834 rplS Pseudoalteromonas atlantica T6c 50S ribosomal protein L19 YP_661156.1 1886290 D 342610 CDS YP_661157.1 109897902 4173835 complement(1886721..1887104) 1 NC_008228.1 KEGG: sil:SPO0313 glyoxalase family protein; glyoxalase family protein 1887104 4173835 Patl_1581 Pseudoalteromonas atlantica T6c glyoxalase family protein YP_661157.1 1886721 R 342610 CDS YP_661158.1 109897903 4173836 1887195..1887650 1 NC_008228.1 TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: regulatory protein, MerR; KEGG: sil:SPO0314 redox-sensitive transcriptional activator SoxR; MerR family transcriptional regulator 1887650 4173836 Patl_1582 Pseudoalteromonas atlantica T6c MerR family transcriptional regulator YP_661158.1 1887195 D 342610 CDS YP_661159.1 109897904 4173837 1887686..1888678 1 NC_008228.1 PFAM: protein of unknown function DUF890; KEGG: vfi:VFA1153 methyltransferase; putative SAM-dependent methyltransferase 1888678 4173837 Patl_1583 Pseudoalteromonas atlantica T6c putative SAM-dependent methyltransferase YP_661159.1 1887686 D 342610 CDS YP_661160.1 109897905 4173838 1888849..1889439 1 NC_008228.1 PFAM: transferase hexapeptide repeat; KEGG: ecc:c0577 maltose O-acetyltransferase; hexapaptide repeat-containing transferase 1889439 4173838 Patl_1584 Pseudoalteromonas atlantica T6c hexapaptide repeat-containing transferase YP_661160.1 1888849 D 342610 CDS YP_661161.1 109897906 4173839 1889483..1890241 1 NC_008228.1 PFAM: heat shock protein DnaJ-like; KEGG: ilo:IL1722 DnaJ-related protein; heat shock protein DnaJ-like protein 1890241 4173839 Patl_1585 Pseudoalteromonas atlantica T6c heat shock protein DnaJ-like protein YP_661161.1 1889483 D 342610 CDS YP_661162.1 109897907 4173840 complement(1890308..1892518) 1 NC_008228.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: bfs:BF3021 putative peptidyl-dipeptidase; peptidyl-dipeptidase Dcp 1892518 4173840 Patl_1586 Pseudoalteromonas atlantica T6c peptidyl-dipeptidase Dcp YP_661162.1 1890308 R 342610 CDS YP_661163.1 109897908 4173841 1892943..1894034 1 NC_008228.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1894034 4173841 Patl_1587 Pseudoalteromonas atlantica T6c phospho-2-dehydro-3-deoxyheptonate aldolase YP_661163.1 1892943 D 342610 CDS YP_661164.1 109897909 4173842 1894046..1895173 1 NC_008228.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 1895173 tyrA 4173842 tyrA Pseudoalteromonas atlantica T6c bifunctional chorismate mutase/prephenate dehydrogenase YP_661164.1 1894046 D 342610 CDS YP_661165.1 109897910 4173843 1895203..1895871 1 NC_008228.1 PFAM: protein of unknown function DUF1275; KEGG: ilo:IL0299 hypothetical protein; hypothetical protein 1895871 4173843 Patl_1589 Pseudoalteromonas atlantica T6c hypothetical protein YP_661165.1 1895203 D 342610 CDS YP_661166.1 109897911 4173844 complement(1895927..1897126) 1 NC_008228.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase Chorismate mutase; KEGG: cps:CPS_1221 chorismate mutase / prephenate dehydratase; chorismate mutase 1897126 4173844 Patl_1590 Pseudoalteromonas atlantica T6c chorismate mutase YP_661166.1 1895927 R 342610 CDS YP_661167.1 109897912 4173845 complement(1897335..1898135) 1 NC_008228.1 PFAM: response regulator receiver; KEGG: son:SO0549 chemotaxis protein CheY/response regulator receiver domain protein; response regulator receiver protein 1898135 4173845 Patl_1591 Pseudoalteromonas atlantica T6c response regulator receiver protein YP_661167.1 1897335 R 342610 CDS YP_661168.1 109897913 4173846 complement(1898168..1898488) 1 NC_008228.1 PFAM: translation initiation factor SUI1; KEGG: vfi:VFA0573 protein translation initiation factor 1 (IF-1) (or SUI1); translation initiation factor SUI1 1898488 4173846 Patl_1592 Pseudoalteromonas atlantica T6c translation initiation factor SUI1 YP_661168.1 1898168 R 342610 CDS YP_661169.1 109897914 4173847 1898622..1898927 1 NC_008228.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pha:PSHAa0953 anti-sigma factor antagonist; anti-sigma-factor antagonist 1898927 4173847 Patl_1593 Pseudoalteromonas atlantica T6c anti-sigma-factor antagonist YP_661169.1 1898622 D 342610 CDS YP_661170.1 109897915 4173848 1898961..1900607 1 NC_008228.1 PFAM: response regulator receiver Stage II sporulation E; SMART: Protein phosphatase 2C-like; KEGG: pha:PSHAa0954 response regulator; response regulator receiver protein 1900607 4173848 Patl_1594 Pseudoalteromonas atlantica T6c response regulator receiver protein YP_661170.1 1898961 D 342610 CDS YP_661171.1 109897916 4173849 1900604..1901077 1 NC_008228.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0920 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1901077 4173849 Patl_1595 Pseudoalteromonas atlantica T6c N-acetyltransferase GCN5 YP_661171.1 1900604 D 342610 CDS YP_661172.1 109897917 4173850 1901119..1902174 1 NC_008228.1 PFAM: extracellular solute-binding protein, family 1; KEGG: ilo:IL1059 ABC-type Fe3+ transport system, periplasmic component; extracellular solute-binding protein 1902174 4173850 Patl_1596 Pseudoalteromonas atlantica T6c extracellular solute-binding protein YP_661172.1 1901119 D 342610 CDS YP_661173.1 109897918 4173851 1902274..1903860 1 NC_008228.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ilo:IL1060 ABC-type Fe3+ transport system, permease component; binding-protein-dependent transport system inner membrane protein 1903860 4173851 Patl_1597 Pseudoalteromonas atlantica T6c binding-protein-dependent transport system inner membrane protein YP_661173.1 1902274 D 342610 CDS YP_661174.1 109897919 4173852 1903853..1904899 1 NC_008228.1 PFAM: ABC transporter related Transport-associated OB; SMART: ATPase; KEGG: nmu:Nmul_A0730 ABC transporter related; ABC transporter-like protein 1904899 4173852 Patl_1598 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_661174.1 1903853 D 342610 CDS YP_661175.1 109897920 4173853 1904995..1905444 1 NC_008228.1 PFAM: protein of unknown function DUF1332; KEGG: pha:PSHAa2887 hypothetical protein; hypothetical protein 1905444 4173853 Patl_1599 Pseudoalteromonas atlantica T6c hypothetical protein YP_661175.1 1904995 D 342610 CDS YP_661176.1 109897921 4173854 1905833..1906177 1 NC_008228.1 KEGG: xcb:XC_3869 hypothetical protein; hypothetical protein 1906177 4173854 Patl_1600 Pseudoalteromonas atlantica T6c hypothetical protein YP_661176.1 1905833 D 342610 CDS YP_661177.1 109897922 4173855 1906292..1907695 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: sbo:SBO_2584 putative 2-component sensor protein; sensor signal transduction histidine kinase 1907695 4173855 Patl_1601 Pseudoalteromonas atlantica T6c sensor signal transduction histidine kinase YP_661177.1 1906292 D 342610 CDS YP_661178.1 109897923 4173856 1907695..1908297 1 NC_008228.1 hypothetical protein 1908297 4173856 Patl_1602 Pseudoalteromonas atlantica T6c hypothetical protein YP_661178.1 1907695 D 342610 CDS YP_661179.1 109897924 4173857 1908294..1909643 1 NC_008228.1 PFAM: response regulator receiver sigma-54 factor, interaction region helix-turn-helix, Fis-type ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: stm:STM2562 putative transcriptional regulator of two-component regulator protein (EBP familiiy); two component sigma-54 specific Fis family transcriptional regulator 1909643 4173857 Patl_1603 Pseudoalteromonas atlantica T6c two component sigma-54 specific Fis family transcriptional regulator YP_661179.1 1908294 D 342610 CDS YP_661180.1 109897925 4173858 1909837..1910628 1 NC_008228.1 KEGG: sbo:SBO_2355 pseudouridylate synthase I; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A 1910628 4173858 Patl_1604 Pseudoalteromonas atlantica T6c tRNA pseudouridine synthase A YP_661180.1 1909837 D 342610 CDS YP_661181.1 109897926 4173859 1910766..1911614 1 NC_008228.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: cps:CPS_3802 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; acetyl-CoA carboxylase, carboxyl transferase subunit beta 1911614 4173859 Patl_1605 Pseudoalteromonas atlantica T6c acetyl-CoA carboxylase, carboxyl transferase subunit beta YP_661181.1 1910766 D 342610 CDS YP_661182.1 109897927 4173860 1911630..1912910 1 NC_008228.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; KEGG: sec:SC2367 multifunctional folylpolyglutamate synthase; dihydrofolate synthase, also has formylTHF polyglutamate synthase activity; bifunctional folylpolyglutamate synthase/dihydrofolate synthase 1912910 4173860 Patl_1606 Pseudoalteromonas atlantica T6c bifunctional folylpolyglutamate synthase/dihydrofolate synthase YP_661182.1 1911630 D 342610 CDS YP_661183.1 109897928 4173861 1912907..1913551 1 NC_008228.1 PFAM: Sporulation related; KEGG: cps:CPS_3800 DedD protein; sporulation-like protein 1913551 4173861 Patl_1607 Pseudoalteromonas atlantica T6c sporulation-like protein YP_661183.1 1912907 D 342610 CDS YP_661184.1 109897929 4173862 1913689..1914177 1 NC_008228.1 PFAM: Colicin V production protein; KEGG: ilo:IL1013 uncharacterized membrane protein; colicin V production protein 1914177 4173862 Patl_1608 Pseudoalteromonas atlantica T6c colicin V production protein YP_661184.1 1913689 D 342610 CDS YP_661185.1 109897930 4173863 1914204..1915721 1 NC_008228.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1915721 4173863 Patl_1609 Pseudoalteromonas atlantica T6c amidophosphoribosyltransferase YP_661185.1 1914204 D 342610 CDS YP_661186.1 109897931 4173864 complement(1915888..1916487) 1 NC_008228.1 PFAM: protein of unknown function DUF1282; KEGG: son:SO1787 hypothetical protein; hypothetical protein 1916487 4173864 Patl_1610 Pseudoalteromonas atlantica T6c hypothetical protein YP_661186.1 1915888 R 342610 CDS YP_661187.1 109897932 4173865 1916792..1917817 1 NC_008228.1 PFAM: biotin/lipoyl attachment secretion protein HlyD; KEGG: rpb:RPB_0171 secretion protein HlyD; secretion protein HlyD 1917817 4173865 Patl_1611 Pseudoalteromonas atlantica T6c secretion protein HlyD YP_661187.1 1916792 D 342610 CDS YP_661188.1 109897933 4173866 1917817..1920624 1 NC_008228.1 PFAM: ABC transporter related ABC-2 type transporter; SMART: ATPase; KEGG: pae:PA5231 putative ABC-2 type transport system permease/ATP-binding protein; ABC transporter-like protein 1920624 4173866 Patl_1612 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_661188.1 1917817 D 342610 CDS YP_661189.1 109897934 4173867 1920628..1921752 1 NC_008228.1 PFAM: ABC-2 type transporter; KEGG: spt:SPA3436 putative ABC superfamily (atp_bind/membrane) transport protein; ABC transporter 1921752 4173867 Patl_1613 Pseudoalteromonas atlantica T6c ABC transporter YP_661189.1 1920628 D 342610 CDS YP_661190.1 109897935 4173868 1921934..1922686 1 NC_008228.1 PFAM: tRNA-hydroxylase; KEGG: pha:PSHAa2068 tRNA-hydroxylase; tRNA-hydroxylase 1922686 4173868 Patl_1614 Pseudoalteromonas atlantica T6c tRNA-hydroxylase YP_661190.1 1921934 D 342610 CDS YP_661191.1 109897936 4173869 complement(1922702..1923268) 1 NC_008228.1 KEGG: vpa:VPA0123 putative hydrolase; HAD superfamily hydrolase 1923268 4173869 Patl_1615 Pseudoalteromonas atlantica T6c HAD superfamily hydrolase YP_661191.1 1922702 R 342610 CDS YP_661192.1 109897937 4173870 1923361..1924011 1 NC_008228.1 PFAM: DoxX; KEGG: son:SO2710 hypothetical protein; DoxX protein 1924011 4173870 Patl_1616 Pseudoalteromonas atlantica T6c DoxX protein YP_661192.1 1923361 D 342610 CDS YP_661193.1 109897938 4173871 1924127..1924678 1 NC_008228.1 PFAM: nitroreductase; KEGG: pha:PSHAa1411 nitroreductase; nitroreductase 1924678 4173871 Patl_1617 Pseudoalteromonas atlantica T6c nitroreductase YP_661193.1 1924127 D 342610 CDS YP_661194.1 109897939 4174047 complement(1924785..1926128) 1 NC_008228.1 PFAM: helicase-like DEAD/DEAH box helicase-like; KEGG: son:SO2838 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 1926128 4174047 Patl_1618 Pseudoalteromonas atlantica T6c DEAD/DEAH box helicase YP_661194.1 1924785 R 342610 CDS YP_661195.1 109897940 4174048 complement(1926222..1926878) 1 NC_008228.1 KEGG: pha:PSHAa1446 succinyl-CoA transferase, beta subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 1926878 4174048 Patl_1619 Pseudoalteromonas atlantica T6c 3-oxoacid CoA-transferase subunit B YP_661195.1 1926222 R 342610 CDS YP_661196.1 109897941 4174049 complement(1926888..1927607) 1 NC_008228.1 KEGG: pha:PSHAa2943 succinyl-CoA transferase, alpha subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 1927607 4174049 Patl_1620 Pseudoalteromonas atlantica T6c 3-oxoacid CoA-transferase subunit A YP_661196.1 1926888 R 342610 CDS YP_661197.1 109897942 4174050 1927727..1928620 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pae:PA1998 probable transcriptional regulator; LysR family transcriptional regulator 1928620 4174050 Patl_1621 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_661197.1 1927727 D 342610 CDS YP_661198.1 109897943 4174051 complement(1928666..1929433) 1 NC_008228.1 KEGG: cps:CPS_1199 hypothetical protein; hypothetical protein 1929433 4174051 Patl_1622 Pseudoalteromonas atlantica T6c hypothetical protein YP_661198.1 1928666 R 342610 CDS YP_661199.1 109897944 4174052 complement(1929484..1930179) 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like; KEGG: ilo:IL1710 signal transduction histidine kinase; histidine kinase 1930179 4174052 Patl_1623 Pseudoalteromonas atlantica T6c histidine kinase YP_661199.1 1929484 R 342610 CDS YP_661200.1 109897945 4174053 1930376..1931350 1 NC_008228.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 1931350 cysB 4174053 cysB Pseudoalteromonas atlantica T6c transcriptional regulator CysB YP_661200.1 1930376 D 342610 CDS YP_661201.1 109897946 4174054 complement(1931489..1932862) 1 NC_008228.1 KEGG: pha:PSHAa1163 L-serine deaminase I; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain serine dehydratase beta chain; L-serine dehydratase 1 1932862 4174054 Patl_1625 Pseudoalteromonas atlantica T6c L-serine dehydratase 1 YP_661201.1 1931489 R 342610 CDS YP_661202.1 109897947 4174055 complement(1933100..1933693) 1 NC_008228.1 PFAM: NUDIX hydrolase; KEGG: ilo:IL1707 NTP pyrophosphohydrolase, NUDIX family; NUDIX hydrolase 1933693 4174055 Patl_1626 Pseudoalteromonas atlantica T6c NUDIX hydrolase YP_661202.1 1933100 R 342610 CDS YP_661203.1 109897948 4174056 complement(1933698..1935074) 1 NC_008228.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein Anthranilate synthase component I-like; KEGG: cps:CPS_3614 para-aminobenzoate synthase, component I; para-aminobenzoate synthase subunit I 1935074 4174056 Patl_1627 Pseudoalteromonas atlantica T6c para-aminobenzoate synthase subunit I YP_661203.1 1933698 R 342610 CDS YP_661204.1 109897949 4174057 1935321..1936850 1 NC_008228.1 TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: pha:PSHAa1166 fumarate hydratase, class I; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha 1936850 4174057 Patl_1628 Pseudoalteromonas atlantica T6c tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha YP_661204.1 1935321 D 342610 CDS YP_661205.1 109897950 4174058 1937064..1938620 1 NC_008228.1 PFAM: protein of unknown function DUF195; KEGG: son:SO2041 hypothetical protein; hypothetical protein 1938620 4174058 Patl_1629 Pseudoalteromonas atlantica T6c hypothetical protein YP_661205.1 1937064 D 342610 CDS YP_661206.1 109897951 4174059 1938617..1939288 1 NC_008228.1 PFAM: pseudouridine synthase; KEGG: pha:PSHAa1206 23S rRNA pseudouridylate synthase; pseudouridylate synthase 1939288 4174059 Patl_1630 Pseudoalteromonas atlantica T6c pseudouridylate synthase YP_661206.1 1938617 D 342610 CDS YP_661207.1 109897952 4174060 1939622..1940917 1 NC_008228.1 KEGG: neu:NE1699 hypothetical protein; hypothetical protein 1940917 4174060 Patl_1631 Pseudoalteromonas atlantica T6c hypothetical protein YP_661207.1 1939622 D 342610 CDS YP_661208.1 109897953 4174061 1941283..1943394 1 NC_008228.1 KEGG: cps:CPS_2207 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease RNA binding S1 KH, type 1; SMART: KH; polynucleotide phosphorylase/polyadenylase 1943394 4174061 Patl_1632 Pseudoalteromonas atlantica T6c polynucleotide phosphorylase/polyadenylase YP_661208.1 1941283 D 342610 CDS YP_661209.1 109897954 4174062 complement(1943526..1944365) 1 NC_008228.1 PFAM: Aldose 1-epimerase; KEGG: vfi:VF0912 aldose 1-epimerase-like protein; aldose 1-epimerase 1944365 4174062 Patl_1633 Pseudoalteromonas atlantica T6c aldose 1-epimerase YP_661209.1 1943526 R 342610 CDS YP_661210.1 109897955 4174063 complement(1944442..1945437) 1 NC_008228.1 KEGG: vch:VC2000 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 1945437 4174063 Patl_1634 Pseudoalteromonas atlantica T6c glyceraldehyde-3-phosphate dehydrogenase, type I YP_661210.1 1944442 R 342610 CDS YP_661211.1 109897956 4174064 1945673..1947868 1 NC_008228.1 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 1947868 malQ 4174064 malQ Pseudoalteromonas atlantica T6c 4-alpha-glucanotransferase YP_661211.1 1945673 D 342610 CDS YP_661212.1 109897957 4174065 1947919..1950108 1 NC_008228.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 1950108 4174065 Patl_1636 Pseudoalteromonas atlantica T6c glycogen branching protein YP_661212.1 1947919 D 342610 CDS YP_661213.1 109897958 4174066 1950112..1952187 1 NC_008228.1 KEGG: sru:SRU_0849 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13-like alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; glycogen debranching protein GlgX 1952187 4174066 Patl_1637 Pseudoalteromonas atlantica T6c glycogen debranching protein GlgX YP_661213.1 1950112 D 342610 CDS YP_661214.1 109897959 4174067 1952316..1952699 1 NC_008228.1 KEGG: hch:HCH_02302 conserved domain frequently associated with peptide methionine sulfoxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; methionine-R-sulfoxide reductase 1952699 4174067 Patl_1638 Pseudoalteromonas atlantica T6c methionine-R-sulfoxide reductase YP_661214.1 1952316 D 342610 CDS YP_661215.1 109897960 4174068 complement(1952834..1953619) 1 NC_008228.1 KEGG: pha:PSHAa1901 hypothetical protein; hypothetical protein 1953619 4174068 Patl_1639 Pseudoalteromonas atlantica T6c hypothetical protein YP_661215.1 1952834 R 342610 CDS YP_661216.1 109897961 4174069 1953807..1955267 1 NC_008228.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 1955267 4174069 Patl_1640 Pseudoalteromonas atlantica T6c glyceraldehyde-3-phosphate dehydrogenase YP_661216.1 1953807 D 342610 CDS YP_661217.1 109897962 4174070 1955560..1956687 1 NC_008228.1 PFAM: peptidase M14, carboxypeptidase A; KEGG: pha:PSHAa1899 zinc carboxypeptidase domain protein; peptidase M14, carboxypeptidase A 1956687 4174070 Patl_1641 Pseudoalteromonas atlantica T6c peptidase M14, carboxypeptidase A YP_661217.1 1955560 D 342610 CDS YP_661218.1 109897963 4174071 1956775..1958448 1 NC_008228.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: pha:PSHAa1898 Na(+)-linked D-alanine glycine permease; amino acid carrier protein 1958448 4174071 Patl_1642 Pseudoalteromonas atlantica T6c amino acid carrier protein YP_661218.1 1956775 D 342610 CDS YP_661219.1 109897964 4174072 1958543..1958869 1 NC_008228.1 KEGG: cps:CPS_2564 hypothetical protein; hypothetical protein 1958869 4174072 Patl_1643 Pseudoalteromonas atlantica T6c hypothetical protein YP_661219.1 1958543 D 342610 CDS YP_661220.1 109897965 4174073 1958869..1959150 1 NC_008228.1 PFAM: protein of unknown function DUF1315; KEGG: pha:PSHAa1896 hypothetical protein; hypothetical protein 1959150 4174073 Patl_1644 Pseudoalteromonas atlantica T6c hypothetical protein YP_661220.1 1958869 D 342610 CDS YP_661221.1 109897966 4174074 1959140..1961938 1 NC_008228.1 KEGG: cps:CPS_2566 hypothetical protein; hypothetical protein 1961938 4174074 Patl_1645 Pseudoalteromonas atlantica T6c hypothetical protein YP_661221.1 1959140 D 342610 CDS YP_661222.1 109897967 4174075 1962017..1962970 1 NC_008228.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 pseudouridine synthase; KEGG: cps:CPS_0916 RNA pseudouridine synthase family protein; pseudouridine synthase Rsu 1962970 4174075 Patl_1646 Pseudoalteromonas atlantica T6c pseudouridine synthase Rsu YP_661222.1 1962017 D 342610 CDS YP_661223.1 109897968 4174076 complement(1963181..1964908) 1 NC_008228.1 PFAM: Citrate transporter TrkA-C TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: cps:CPS_2144 putative transporter; hypothetical protein 1964908 4174076 Patl_1647 Pseudoalteromonas atlantica T6c hypothetical protein YP_661223.1 1963181 R 342610 CDS YP_661224.1 109897969 4174077 complement(1964927..1966336) 1 NC_008228.1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 1966336 cysN 4174077 cysN Pseudoalteromonas atlantica T6c sulfate adenylyltransferase subunit 1 YP_661224.1 1964927 R 342610 CDS YP_661225.1 109897970 4174078 complement(1966339..1967127) 1 NC_008228.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: pha:PSHAa0208 3',5' adenosine diphosphate 3' phosphatase; 3'(2'),5'-bisphosphate nucleotidase 1967127 4174078 Patl_1649 Pseudoalteromonas atlantica T6c 3'(2'),5'-bisphosphate nucleotidase YP_661225.1 1966339 R 342610 CDS YP_661226.1 109897971 4174079 complement(1967127..1967723) 1 NC_008228.1 PFAM: adenylylsulfate kinase; KEGG: bcl:ABC0614 adenylylsulfate kinase; adenylylsulfate kinase 1967723 4174079 Patl_1650 Pseudoalteromonas atlantica T6c adenylylsulfate kinase YP_661226.1 1967127 R 342610 CDS YP_661227.1 109897972 4174080 complement(1967723..1968637) 1 NC_008228.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 1968637 4174080 Patl_1651 Pseudoalteromonas atlantica T6c sulfate adenylyltransferase subunit 2 YP_661227.1 1967723 R 342610 CDS YP_661228.1 109897973 4174081 complement(1968769..1969989) 1 NC_008228.1 PFAM: EAL; KEGG: cps:CPS_3464 EAL domain protein; diguanylate phosphodiesterase 1969989 4174081 Patl_1652 Pseudoalteromonas atlantica T6c diguanylate phosphodiesterase YP_661228.1 1968769 R 342610 CDS YP_661229.1 109897974 4174082 complement(1970010..1971545) 1 NC_008228.1 TIGRFAM: SSS sodium solute transporter superfamily sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: cps:CPS_3463 proline/sodium symporter; sodium/proline symporter 1971545 4174082 Patl_1653 Pseudoalteromonas atlantica T6c sodium/proline symporter YP_661229.1 1970010 R 342610 CDS YP_661230.1 109897975 4174083 1971652..1972110 1 NC_008228.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV0076 probable ElaA protein; N-acetyltransferase GCN5 1972110 4174083 Patl_1654 Pseudoalteromonas atlantica T6c N-acetyltransferase GCN5 YP_661230.1 1971652 D 342610 CDS YP_661231.1 109897976 4174084 complement(1972221..1972928) 1 NC_008228.1 KEGG: cps:CPS_3166 hypothetical protein; hypothetical protein 1972928 4174084 Patl_1655 Pseudoalteromonas atlantica T6c hypothetical protein YP_661231.1 1972221 R 342610 CDS YP_661232.1 109897977 4174085 complement(1972921..1973478) 1 NC_008228.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 1973478 4174085 Patl_1656 Pseudoalteromonas atlantica T6c RNA polymerase sigma factor YP_661232.1 1972921 R 342610 CDS YP_661233.1 109897978 4172248 complement(1973665..1975419) 1 NC_008228.1 KEGG: cps:CPS_3164 BatD protein; BatD protein 1975419 4172248 Patl_1657 Pseudoalteromonas atlantica T6c BatD protein YP_661233.1 1973665 R 342610 CDS YP_661234.1 109897979 4172249 complement(1975424..1977367) 1 NC_008228.1 PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: cps:CPS_3163 TPR domain protein; hypothetical protein 1977367 4172249 Patl_1658 Pseudoalteromonas atlantica T6c hypothetical protein YP_661234.1 1975424 R 342610 CDS YP_661235.1 109897980 4172250 complement(1977360..1978391) 1 NC_008228.1 PFAM: von Willebrand factor, type A; KEGG: ilo:IL0998 uncharacterized protein containing a von Willebrand factor type A (vWA) domain; von Willebrand factor type A domain-containing protein 1978391 4172250 Patl_1659 Pseudoalteromonas atlantica T6c von Willebrand factor type A domain-containing protein YP_661235.1 1977360 R 342610 CDS YP_661236.1 109897981 4172251 complement(1978384..1978887) 1 NC_008228.1 KEGG: son:SO3092 hypothetical protein; hypothetical protein 1978887 4172251 Patl_1660 Pseudoalteromonas atlantica T6c hypothetical protein YP_661236.1 1978384 R 342610 CDS YP_661237.1 109897982 4172252 complement(1978884..1979855) 1 NC_008228.1 PFAM: protein of unknown function DUF58; KEGG: cps:CPS_3160 hypothetical protein; hypothetical protein 1979855 4172252 Patl_1661 Pseudoalteromonas atlantica T6c hypothetical protein YP_661237.1 1978884 R 342610 CDS YP_661238.1 109897983 4172253 complement(1979867..1980823) 1 NC_008228.1 PFAM: ATPase associated with various cellular activities, AAA_3 ATPase associated with various cellular activities, AAA_5; KEGG: ilo:IL0995 MoxR-like ATPase; ATPase 1980823 4172253 Patl_1662 Pseudoalteromonas atlantica T6c ATPase YP_661238.1 1979867 R 342610 CDS YP_661239.1 109897984 4172254 1981222..1982532 1 NC_008228.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 1982532 fadI 4172254 fadI Pseudoalteromonas atlantica T6c 3-ketoacyl-CoA thiolase YP_661239.1 1981222 D 342610 CDS YP_661240.1 109897985 4172255 1982543..1984696 1 NC_008228.1 multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha 1984696 fadJ 4172255 fadJ Pseudoalteromonas atlantica T6c multifunctional fatty acid oxidation complex subunit alpha YP_661240.1 1982543 D 342610 CDS YP_661241.1 109897986 4172256 complement(1985405..1989922) 1 NC_008228.1 KEGG: son:SO3084 sensory box protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL Two component regulator propeller Two component regulator three Y PAS fold-3 PAS fold-4 PAS fold; SMART: PAC motif; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1989922 4172256 Patl_1665 Pseudoalteromonas atlantica T6c PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_661241.1 1985405 R 342610 CDS YP_661242.1 109897987 4172257 complement(1990112..1992949) 1 NC_008228.1 PFAM: peptidase M16-like; KEGG: son:SO3083 peptidase, M16 family; peptidase M16-like protein 1992949 4172257 Patl_1666 Pseudoalteromonas atlantica T6c peptidase M16-like protein YP_661242.1 1990112 R 342610 CDS YP_661243.1 109897988 4172258 1993002..1993475 1 NC_008228.1 TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: vpa:VP2205 phosphohistidine phosphatase; phosphohistidine phosphatase SixA 1993475 4172258 Patl_1667 Pseudoalteromonas atlantica T6c phosphohistidine phosphatase SixA YP_661243.1 1993002 D 342610 CDS YP_661244.1 109897989 4172259 complement(1993765..1995054) 1 NC_008228.1 PFAM: CBS domain containing protein protein of unknown function DUF21 transporter-associated region; KEGG: son:SO1354 hemolysin protein, putative; hypothetical protein 1995054 4172259 Patl_1668 Pseudoalteromonas atlantica T6c hypothetical protein YP_661244.1 1993765 R 342610 CDS YP_661245.1 109897990 4172260 complement(1995158..1995946) 1 NC_008228.1 PFAM: cytochrome c assembly protein; KEGG: vpa:VP2535 hypothetical protein; cytochrome c assembly protein 1995946 4172260 Patl_1669 Pseudoalteromonas atlantica T6c cytochrome c assembly protein YP_661245.1 1995158 R 342610 CDS YP_661246.1 109897991 4172261 1996180..1997556 1 NC_008228.1 KEGG: cps:CPS_4073 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G-domain Signal peptide binding (SRP54) M-domain; SMART: ATPase; signal recognition particle protein 1997556 4172261 Patl_1670 Pseudoalteromonas atlantica T6c signal recognition particle protein YP_661246.1 1996180 D 342610 CDS YP_661247.1 109897992 4172262 1997673..1997945 1 NC_008228.1 PFAM: Modulator of Rho-dependent transcription termination; KEGG: vvy:VVA1468 hypothetical protein; transcriptional antiterminator Rof 1997945 4172262 Patl_1671 Pseudoalteromonas atlantica T6c transcriptional antiterminator Rof YP_661247.1 1997673 D 342610 CDS YP_661248.1 109897993 4172263 1998099..1999316 1 NC_008228.1 KEGG: dde:Dde_3600 hypothetical protein; hypothetical protein 1999316 4172263 Patl_1672 Pseudoalteromonas atlantica T6c hypothetical protein YP_661248.1 1998099 D 342610 CDS YP_661249.1 109897994 4172264 complement(1999338..2000246) 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pha:PSHAb0014 putative transcriptional regulatory protein (LysR family); LysR family transcriptional regulator 2000246 4172264 Patl_1673 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_661249.1 1999338 R 342610 CDS YP_661250.1 109897995 4172265 2000404..2001402 1 NC_008228.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: ilo:IL0315 predicted NADP-dependent oxidoreductases; zinc-binding alcohol dehydrogenase 2001402 4172265 Patl_1674 Pseudoalteromonas atlantica T6c zinc-binding alcohol dehydrogenase YP_661250.1 2000404 D 342610 CDS YP_661251.1 109897996 4172266 complement(2001601..2002503) 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: son:SO3318 transcriptional regulator, LysR family; LysR family transcriptional regulator 2002503 4172266 Patl_1675 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_661251.1 2001601 R 342610 CDS YP_661252.1 109897997 4172267 complement(2002606..2003301) 1 NC_008228.1 PFAM: Pirin-like Cupin 2, conserved barrel; KEGG: vpa:VPA0042 hypothetical protein; pirin-like protein 2003301 4172267 Patl_1676 Pseudoalteromonas atlantica T6c pirin-like protein YP_661252.1 2002606 R 342610 CDS YP_661253.1 109897998 4172268 complement(2003325..2003774) 1 NC_008228.1 PFAM: DoxX; KEGG: cps:CPS_1770 DoxD-like family protein; DoxX protein 2003774 4172268 Patl_1677 Pseudoalteromonas atlantica T6c DoxX protein YP_661253.1 2003325 R 342610 CDS YP_661254.1 109897999 4172270 complement(2004547..2005926) 1 NC_008228.1 PFAM: Fibronectin, type III peptidase M28; KEGG: ilo:IL1071 probable aminopeptidase fused to fibronectin type 3 domain; peptidase M28 2005926 4172270 Patl_1679 Pseudoalteromonas atlantica T6c peptidase M28 YP_661254.1 2004547 R 342610 CDS YP_661255.1 109898000 4172271 2006155..2010729 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL Two component regulator propeller Two component regulator three Y PAS fold-3; KEGG: cps:CPS_4985 sensory box/GGDEF/EAL domain protein; diguanylate cyclase/phosphodiesterase 2010729 4172271 Patl_1680 Pseudoalteromonas atlantica T6c diguanylate cyclase/phosphodiesterase YP_661255.1 2006155 D 342610 CDS YP_661256.1 109898001 4172272 complement(2010852..2011472) 1 NC_008228.1 hypothetical protein 2011472 4172272 Patl_1681 Pseudoalteromonas atlantica T6c hypothetical protein YP_661256.1 2010852 R 342610 CDS YP_661257.1 109898002 4172273 2011704..2013386 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: tcx:Tcr_1062 diguanylate cyclase (GGDEF domain); diguanylate cyclase 2013386 4172273 Patl_1682 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_661257.1 2011704 D 342610 CDS YP_661258.1 109898003 4172274 2013447..2014274 1 NC_008228.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: hch:HCH_03217 protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin; phytanoyl-CoA dioxygenase 2014274 4172274 Patl_1683 Pseudoalteromonas atlantica T6c phytanoyl-CoA dioxygenase YP_661258.1 2013447 D 342610 CDS YP_661259.1 109898004 4172275 complement(2014283..2014558) 1 NC_008228.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: cps:CPS_3482 peptidyl-prolyl cis-trans isomerase C; PpiC-type peptidyl-prolyl cis-trans isomerase 2014558 4172275 Patl_1684 Pseudoalteromonas atlantica T6c PpiC-type peptidyl-prolyl cis-trans isomerase YP_661259.1 2014283 R 342610 CDS YP_661260.1 109898005 4172276 2014905..2015672 1 NC_008228.1 PFAM: class II aldolase/adducin-like; KEGG: pha:PSHAa0286 hypothetical protein; class II aldolase/adducin-like protein 2015672 4172276 Patl_1685 Pseudoalteromonas atlantica T6c class II aldolase/adducin-like protein YP_661260.1 2014905 D 342610 CDS YP_661261.1 109898006 4172277 2015721..2016896 1 NC_008228.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: cps:CPS_1173 mandelate racemase/muconate lactonizing enzyme family protein; mandelate racemase/muconate lactonizing-like protein 2016896 4172277 Patl_1686 Pseudoalteromonas atlantica T6c mandelate racemase/muconate lactonizing-like protein YP_661261.1 2015721 D 342610 CDS YP_661262.1 109898007 4172278 2017199..2018521 1 NC_008228.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aminotransferase, class V; KEGG: pae:PA2394 probable aminotransferase; twin-arginine translocation pathway signal protein 2018521 4172278 Patl_1687 Pseudoalteromonas atlantica T6c twin-arginine translocation pathway signal protein YP_661262.1 2017199 D 342610 CDS YP_661263.1 109898008 4172279 complement(2018626..2020881) 1 NC_008228.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2020881 4172279 Patl_1688 Pseudoalteromonas atlantica T6c acyl-CoA dehydrogenase YP_661263.1 2018626 R 342610 CDS YP_661264.1 109898009 4172280 complement(2021162..2021947) 1 NC_008228.1 PFAM: peptidase M23B; KEGG: lic:LIC10721 hypothetical protein; peptidase M23B 2021947 4172280 Patl_1689 Pseudoalteromonas atlantica T6c peptidase M23B YP_661264.1 2021162 R 342610 CDS YP_661265.1 109898010 4172281 2022245..2022691 1 NC_008228.1 PFAM: MaoC-like dehydratase; KEGG: hch:HCH_01683 acyl dehydratase; MaoC-like dehydratase 2022691 4172281 Patl_1690 Pseudoalteromonas atlantica T6c MaoC-like dehydratase YP_661265.1 2022245 D 342610 CDS YP_661266.1 109898011 4172282 2022973..2025657 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC3194 TonB-dependent receptor; TonB-dependent receptor 2025657 4172282 Patl_1691 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_661266.1 2022973 D 342610 CDS YP_661267.1 109898012 4172283 2025808..2026137 1 NC_008228.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: cya:CYA_1048 putative pterin-4A-carbinolamine dehydratase; transcriptional coactivator/pterin dehydratase 2026137 4172283 Patl_1692 Pseudoalteromonas atlantica T6c transcriptional coactivator/pterin dehydratase YP_661267.1 2025808 D 342610 CDS YP_661268.1 109898013 4172285 2026570..2027028 1 NC_008228.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 2027028 4172285 Patl_1693 Pseudoalteromonas atlantica T6c hypothetical protein YP_661268.1 2026570 D 342610 CDS YP_661269.1 109898014 4171902 2027077..2028570 1 NC_008228.1 KEGG: cps:CPS_2202 transcription termination factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 NusA-like; SMART: KH; NusA antitermination factor 2028570 4171902 Patl_1694 Pseudoalteromonas atlantica T6c NusA antitermination factor YP_661269.1 2027077 D 342610 CDS YP_661270.1 109898015 4171903 2028594..2031203 1 NC_008228.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 2031203 infB 4171903 infB Pseudoalteromonas atlantica T6c translation initiation factor IF-2 YP_661270.1 2028594 D 342610 CDS YP_661271.1 109898016 4171904 2031311..2031727 1 NC_008228.1 PFAM: ribosome-binding factor A; KEGG: cps:CPS_2204 ribosome-binding factor A; ribosome-binding factor A 2031727 4171904 Patl_1696 Pseudoalteromonas atlantica T6c ribosome-binding factor A YP_661271.1 2031311 D 342610 CDS YP_661272.1 109898017 4171905 2031731..2032684 1 NC_008228.1 KEGG: vpa:VP2454 tRNA pseudouridine 55 synthase; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB-like; tRNA pseudouridine synthase B 2032684 4171905 Patl_1697 Pseudoalteromonas atlantica T6c tRNA pseudouridine synthase B YP_661272.1 2031731 D 342610 CDS YP_661273.1 109898018 4171907 2032794..2033063 1 NC_008228.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 2033063 rpsO 4171907 rpsO Pseudoalteromonas atlantica T6c 30S ribosomal protein S15 YP_661273.1 2032794 D 342610 CDS YP_661274.1 109898019 4171908 complement(2033252..2033632) 1 NC_008228.1 hypothetical protein 2033632 4171908 Patl_1699 Pseudoalteromonas atlantica T6c hypothetical protein YP_661274.1 2033252 R 342610 CDS YP_661275.1 109898020 4171909 complement(2033632..2033850) 1 NC_008228.1 KEGG: cps:CPS_4821 hypothetical protein; hypothetical protein 2033850 4171909 Patl_1700 Pseudoalteromonas atlantica T6c hypothetical protein YP_661275.1 2033632 R 342610 CDS YP_661276.1 109898021 4171910 complement(2033843..2035639) 1 NC_008228.1 PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase; KEGG: son:SO0754 ABC transporter, ATP-binding protein; ABC transporter-like protein 2035639 4171910 Patl_1701 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_661276.1 2033843 R 342610 CDS YP_661277.1 109898022 4171911 complement(2035663..2036775) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: cps:CPS_4684 GGDEF domain protein; diguanylate cyclase 2036775 4171911 Patl_1702 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_661277.1 2035663 R 342610 CDS YP_661278.1 109898023 4171912 complement(2036798..2037391) 1 NC_008228.1 PFAM: protein of unknown function DUF330; KEGG: cps:CPS_3078 putative lipoprotein; hypothetical protein 2037391 4171912 Patl_1703 Pseudoalteromonas atlantica T6c hypothetical protein YP_661278.1 2036798 R 342610 CDS YP_661279.1 109898024 4171913 complement(2037393..2039057) 1 NC_008228.1 PFAM: Mammalian cell entry related; KEGG: cps:CPS_3077 putative paraquat-inducible protein B; hypothetical protein 2039057 4171913 Patl_1704 Pseudoalteromonas atlantica T6c hypothetical protein YP_661279.1 2037393 R 342610 CDS YP_661280.1 109898025 4171914 complement(2039060..2040268) 1 NC_008228.1 TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; KEGG: cps:CPS_3076 integral membrane protein, PqiA family; PqiA family integral membrane protein 2040268 4171914 Patl_1705 Pseudoalteromonas atlantica T6c PqiA family integral membrane protein YP_661280.1 2039060 R 342610 CDS YP_661281.1 109898026 4171915 2040339..2040830 1 NC_008228.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: vch:VC1041 phosphotyrosine protein phosphatase; protein tyrosine phosphatase 2040830 4171915 Patl_1706 Pseudoalteromonas atlantica T6c protein tyrosine phosphatase YP_661281.1 2040339 D 342610 CDS YP_661282.1 109898027 4171916 2041131..2042474 1 NC_008228.1 KEGG: pha:PSHAb0559 phospho-2-dehydro-3-deoxyheptonate aldolase (phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase); TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase, class II; phospho-2-dehydro-3-deoxyheptonate aldolase 2042474 4171916 Patl_1707 Pseudoalteromonas atlantica T6c phospho-2-dehydro-3-deoxyheptonate aldolase YP_661282.1 2041131 D 342610 CDS YP_661283.1 109898028 4171917 2042540..2042791 1 NC_008228.1 PFAM: FeoA; hypothetical protein 2042791 4171917 Patl_1708 Pseudoalteromonas atlantica T6c hypothetical protein YP_661283.1 2042540 D 342610 CDS YP_661284.1 109898029 4171918 2042867..2044723 1 NC_008228.1 TIGRFAM: ferrous iron transport protein B; PFAM: GTP-binding protein, HSR1-related nucleoside recognition; KEGG: rso:RSp0251 probable ferrous iron transport B transmembrane protein; ferrous iron transport protein B 2044723 4171918 Patl_1709 Pseudoalteromonas atlantica T6c ferrous iron transport protein B YP_661284.1 2042867 D 342610 CDS YP_661285.1 109898030 4171919 complement(2044795..2045271) 1 NC_008228.1 PFAM: protein of unknown function DUF88; KEGG: cps:CPS_0134 hypothetical protein; hypothetical protein 2045271 4171919 Patl_1710 Pseudoalteromonas atlantica T6c hypothetical protein YP_661285.1 2044795 R 342610 CDS YP_661286.1 109898031 4171920 2045622..2045807 1 NC_008228.1 KEGG: pha:PSHAa1300 hypothetical protein; hypothetical protein 2045807 4171920 Patl_1711 Pseudoalteromonas atlantica T6c hypothetical protein YP_661286.1 2045622 D 342610 CDS YP_661287.1 109898032 4171921 complement(2045922..2047484) 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: ecc:c0906 hypothetical ABC transporter ATP-binding protein YbiT; ABC transporter-like protein 2047484 4171921 Patl_1712 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_661287.1 2045922 R 342610 CDS YP_661288.1 109898033 4171922 complement(2047951..2048307) 1 NC_008228.1 PFAM: SmpA/OmlA; KEGG: son:SO1476 small protein A; SmpA/OmlA protein 2048307 4171922 Patl_1713 Pseudoalteromonas atlantica T6c SmpA/OmlA protein YP_661288.1 2047951 R 342610 CDS YP_661289.1 109898034 4171923 complement(2048421..2050094) 1 NC_008228.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC protein-like; KEGG: vvu:VV10367 DNA repair protein RecN; DNA repair protein RecN 2050094 4171923 Patl_1714 Pseudoalteromonas atlantica T6c DNA repair protein RecN YP_661289.1 2048421 R 342610 CDS YP_661290.1 109898035 4171924 complement(2050187..2051062) 1 NC_008228.1 PFAM: ATP-NAD/AcoX kinase; KEGG: pha:PSHAa1220 NAD kinase; NAD(+) kinase 2051062 4171924 Patl_1715 Pseudoalteromonas atlantica T6c NAD(+) kinase YP_661290.1 2050187 R 342610 CDS YP_661291.1 109898036 4171925 2051327..2052325 1 NC_008228.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 2052325 4171925 Patl_1716 Pseudoalteromonas atlantica T6c beta-hexosaminidase YP_661291.1 2051327 D 342610 CDS YP_661292.1 109898037 4171926 2052442..2053818 1 NC_008228.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter Citrate transporter; KEGG: ilo:IL2396 Na+/dicarboxylate symporter; anion transporter 2053818 4171926 Patl_1717 Pseudoalteromonas atlantica T6c anion transporter YP_661292.1 2052442 D 342610 CDS YP_661293.1 109898038 4171927 2054086..2054412 1 NC_008228.1 KEGG: mba:Mbar_A1318 hypothetical protein; hypothetical protein 2054412 4171927 Patl_1718 Pseudoalteromonas atlantica T6c hypothetical protein YP_661293.1 2054086 D 342610 CDS YP_661294.1 109898039 4171928 complement(2054459..2055457) 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: rpb:RPB_0879 transcriptional regulator, LysR family; LysR family transcriptional regulator 2055457 4171928 Patl_1719 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_661294.1 2054459 R 342610 CDS YP_661295.1 109898040 4171929 2055873..2057462 1 NC_008228.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: amine oxidase; KEGG: par:Psyc_1152 flavin monoamine oxidase related protein; twin-arginine translocation pathway signal protein 2057462 4171929 Patl_1720 Pseudoalteromonas atlantica T6c twin-arginine translocation pathway signal protein YP_661295.1 2055873 D 342610 CDS YP_661296.1 109898041 4171930 2057452..2058066 1 NC_008228.1 PFAM: cytochrome c, class I; KEGG: sil:SPOA0151 cytochrome c family protein; cytochrome c, class I 2058066 4171930 Patl_1721 Pseudoalteromonas atlantica T6c cytochrome c, class I YP_661296.1 2057452 D 342610 CDS YP_661297.1 109898042 4171931 2058085..2058597 1 NC_008228.1 PFAM: Endoribonuclease L-PSP; KEGG: xcb:XC_0888 TdcF protein; endoribonuclease L-PSP 2058597 4171931 Patl_1722 Pseudoalteromonas atlantica T6c endoribonuclease L-PSP YP_661297.1 2058085 D 342610 CDS YP_661298.1 109898043 4171932 2058701..2061307 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC1093 TonB-dependent receptor, putative; TonB-dependent receptor 2061307 4171932 Patl_1723 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_661298.1 2058701 D 342610 CDS YP_661299.1 109898044 4171933 complement(2061402..2062829) 1 NC_008228.1 KEGG: ilo:IL1521 hypothetical protein; hypothetical protein 2062829 4171933 Patl_1724 Pseudoalteromonas atlantica T6c hypothetical protein YP_661299.1 2061402 R 342610 CDS YP_661300.1 109898045 4171934 complement(2062829..2066311) 1 NC_008228.1 TIGRFAM: transcription-repair coupling factor; PFAM: helicase-like transcription factor CarD TRCF type III restriction enzyme, res subunit DEAD/DEAH box helicase-like; KEGG: pha:PSHAa1836 transcription-repair ATP-dependent coupling factor; transcription-repair coupling factor 2066311 4171934 Patl_1725 Pseudoalteromonas atlantica T6c transcription-repair coupling factor YP_661300.1 2062829 R 342610 CDS YP_661301.1 109898046 4171935 complement(2066317..2066913) 1 NC_008228.1 KEGG: cps:CPS_3480 hypothetical protein; hypothetical protein 2066913 4171935 Patl_1726 Pseudoalteromonas atlantica T6c hypothetical protein YP_661301.1 2066317 R 342610 CDS YP_661302.1 109898047 4171936 2067274..2068485 1 NC_008228.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: ppr:PBPRA2390 putative ABC transporter integral membrane subunit; LolC/E family lipoprotein releasing system, transmembrane protein 2068485 4171936 Patl_1727 Pseudoalteromonas atlantica T6c LolC/E family lipoprotein releasing system, transmembrane protein YP_661302.1 2067274 D 342610 CDS YP_661303.1 109898048 4171937 2068641..2069198 1 NC_008228.1 KEGG: cps:CPS_3834 putative hypoxanthine phosphoribosyltransferase; putative hypoxanthine phosphoribosyltransferase 2069198 4171937 Patl_1728 Pseudoalteromonas atlantica T6c putative hypoxanthine phosphoribosyltransferase YP_661303.1 2068641 D 342610 CDS YP_661304.1 109898049 4171938 complement(2069432..2069965) 1 NC_008228.1 PFAM: YHS; KEGG: cps:CPS_0814 hypothetical protein; hypothetical protein 2069965 4171938 Patl_1729 Pseudoalteromonas atlantica T6c hypothetical protein YP_661304.1 2069432 R 342610 CDS YP_661305.1 109898050 4171939 2070330..2070836 1 NC_008228.1 PFAM: protein of unknown function DUF419; KEGG: hch:HCH_06934 hypothetical protein; hypothetical protein 2070836 4171939 Patl_1730 Pseudoalteromonas atlantica T6c hypothetical protein YP_661305.1 2070330 D 342610 CDS YP_661306.1 109898051 4173659 2071100..2071297 1 NC_008228.1 PFAM: CsbD-like; KEGG: pha:PSHAa2218 hypothetical protein; CsbD-like protein 2071297 4173659 Patl_1731 Pseudoalteromonas atlantica T6c CsbD-like protein YP_661306.1 2071100 D 342610 CDS YP_661307.1 109898052 4173660 2071648..2071809 1 NC_008228.1 PFAM: protein of unknown function DUF1328; KEGG: pha:PSHAa0537 hypothetical protein; hypothetical protein 2071809 4173660 Patl_1732 Pseudoalteromonas atlantica T6c hypothetical protein YP_661307.1 2071648 D 342610 CDS YP_661308.1 109898053 4173661 complement(2072358..2072969) 1 NC_008228.1 hypothetical protein 2072969 4173661 Patl_1733 Pseudoalteromonas atlantica T6c hypothetical protein YP_661308.1 2072358 R 342610 CDS YP_661309.1 109898054 4173662 complement(2072951..2073967) 1 NC_008228.1 hypothetical protein 2073967 4173662 Patl_1734 Pseudoalteromonas atlantica T6c hypothetical protein YP_661309.1 2072951 R 342610 CDS YP_661310.1 109898055 4173663 complement(2074186..2075169) 1 NC_008228.1 PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAb0050 hypothetical protein; hypothetical protein 2075169 4173663 Patl_1735 Pseudoalteromonas atlantica T6c hypothetical protein YP_661310.1 2074186 R 342610 CDS YP_661311.1 109898056 4173664 2076094..2077383 1 NC_008228.1 KEGG: lmf:LMOf2365_2347 hypothetical protein; hypothetical protein 2077383 4173664 Patl_1736 Pseudoalteromonas atlantica T6c hypothetical protein YP_661311.1 2076094 D 342610 CDS YP_661312.1 109898057 4173665 2077666..2078073 1 NC_008228.1 hypothetical protein 2078073 4173665 Patl_1737 Pseudoalteromonas atlantica T6c hypothetical protein YP_661312.1 2077666 D 342610 CDS YP_661313.1 109898058 4173667 2079168..2079488 1 NC_008228.1 KEGG: eli:ELI_11880 FMN oxidoreductase; hypothetical protein 2079488 4173667 Patl_1738 Pseudoalteromonas atlantica T6c hypothetical protein YP_661313.1 2079168 D 342610 CDS YP_661314.1 109898059 4173668 complement(2079646..2080122) 1 NC_008228.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2080122 smpB 4173668 smpB Pseudoalteromonas atlantica T6c SsrA-binding protein YP_661314.1 2079646 R 342610 CDS YP_661315.1 109898060 4173669 2080248..2080679 1 NC_008228.1 PFAM: cyclase/dehydrase; KEGG: vpa:VP0645 hypothetical protein; cyclase/dehydrase 2080679 4173669 Patl_1740 Pseudoalteromonas atlantica T6c cyclase/dehydrase YP_661315.1 2080248 D 342610 CDS YP_661316.1 109898061 4173670 2080676..2081002 1 NC_008228.1 PFAM: protein of unknown function UPF0125; KEGG: ilo:IL0896 hypothetical protein; hypothetical protein 2081002 4173670 Patl_1741 Pseudoalteromonas atlantica T6c hypothetical protein YP_661316.1 2080676 D 342610 CDS YP_661317.1 109898062 4173671 complement(2081043..2081726) 1 NC_008228.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO1579 hypothetical protein; hypothetical protein 2081726 4173671 Patl_1742 Pseudoalteromonas atlantica T6c hypothetical protein YP_661317.1 2081043 R 342610 CDS YP_661318.1 109898063 4173672 complement(2081924..2082736) 1 NC_008228.1 PFAM: protein of unknown function DUF299; KEGG: cps:CPS_3013 hypothetical protein; hypothetical protein 2082736 4173672 Patl_1743 Pseudoalteromonas atlantica T6c hypothetical protein YP_661318.1 2081924 R 342610 CDS YP_661319.1 109898064 4173673 2082948..2085323 1 NC_008228.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2085323 4173673 Patl_1744 Pseudoalteromonas atlantica T6c phosphoenolpyruvate synthase YP_661319.1 2082948 D 342610 CDS YP_661320.1 109898065 4173674 complement(2085491..2085739) 1 NC_008228.1 hypothetical protein 2085739 4173674 Patl_1745 Pseudoalteromonas atlantica T6c hypothetical protein YP_661320.1 2085491 R 342610 CDS YP_661321.1 109898066 4173675 2085974..2089015 1 NC_008228.1 PFAM: FAD linked oxidase-like; KEGG: ppr:PBPRA1294 hypothetical Fe-S oxidoreductase; FAD linked oxidase-like protein 2089015 4173675 Patl_1746 Pseudoalteromonas atlantica T6c FAD linked oxidase-like protein YP_661321.1 2085974 D 342610 CDS YP_661322.1 109898067 4173676 complement(2089239..2090642) 1 NC_008228.1 PFAM: beta-lactamase-like RNA-metabolising metallo-beta-lactamase; KEGG: pae:PA3614 metallo-beta-lactamase family protein; RNA-metabolising metallo-beta-lactamase 2090642 4173676 Patl_1747 Pseudoalteromonas atlantica T6c RNA-metabolising metallo-beta-lactamase YP_661322.1 2089239 R 342610 CDS YP_661323.1 109898068 4173677 2090904..2092739 1 NC_008228.1 PFAM: GCN5-related N-acetyltransferase acetyl-CoA hydrolase/transferase; KEGG: ilo:IL2297 4-hydroxybutyrate CoA-transferase (N-terminal) fused to acetyltransferase (C-terminal) domain of GNAT superfamily; acetyl-CoA hydrolase/transferase 2092739 4173677 Patl_1748 Pseudoalteromonas atlantica T6c acetyl-CoA hydrolase/transferase YP_661323.1 2090904 D 342610 CDS YP_661324.1 109898069 4173678 2092742..2093659 1 NC_008228.1 PFAM: histone deacetylase superfamily; KEGG: eba:ebA775 hypothetical protein; histone deacetylase superfamily protein 2093659 4173678 Patl_1749 Pseudoalteromonas atlantica T6c histone deacetylase superfamily protein YP_661324.1 2092742 D 342610 CDS YP_661325.1 109898070 4173679 complement(2093787..2095769) 1 NC_008228.1 KEGG: nmu:Nmul_A2207 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4 PAS fold; SMART: PAS; PAS/PAC sensor hybrid histidine kinase 2095769 4173679 Patl_1750 Pseudoalteromonas atlantica T6c PAS/PAC sensor hybrid histidine kinase YP_661325.1 2093787 R 342610 CDS YP_661326.1 109898071 4173680 2096116..2096619 1 NC_008228.1 KEGG: cbu:CBU_1950 hypothetical protein; hypothetical protein 2096619 4173680 Patl_1751 Pseudoalteromonas atlantica T6c hypothetical protein YP_661326.1 2096116 D 342610 CDS YP_661327.1 109898072 4173681 complement(2096910..2097086) 1 NC_008228.1 KEGG: sil:SPO3064 hypothetical protein; hypothetical protein 2097086 4173681 Patl_1752 Pseudoalteromonas atlantica T6c hypothetical protein YP_661327.1 2096910 R 342610 CDS YP_661328.1 109898073 4173682 2097332..2098333 1 NC_008228.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: pst:PSPTO0754 alcohol dehydrogenase, zinc-containing; NADPH:quinone reductase 2098333 4173682 Patl_1753 Pseudoalteromonas atlantica T6c NADPH:quinone reductase YP_661328.1 2097332 D 342610 CDS YP_661329.1 109898074 4173683 2098564..2099724 1 NC_008228.1 KEGG: ava:Ava_4197 hypothetical protein; hypothetical protein 2099724 4173683 Patl_1754 Pseudoalteromonas atlantica T6c hypothetical protein YP_661329.1 2098564 D 342610 CDS YP_661330.1 109898075 4173684 2099975..2100631 1 NC_008228.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: pha:PSHAa1831 AhpC-TSA; redoxin 2100631 4173684 Patl_1755 Pseudoalteromonas atlantica T6c redoxin YP_661330.1 2099975 D 342610 CDS YP_661331.1 109898076 4173685 2100863..2104363 1 NC_008228.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: vvy:VV2615 exonuclease V gamma subunit; exodeoxyribonuclease V subunit gamma 2104363 4173685 Patl_1756 Pseudoalteromonas atlantica T6c exodeoxyribonuclease V subunit gamma YP_661331.1 2100863 D 342610 CDS YP_661332.1 109898077 4173686 2104360..2108322 1 NC_008228.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: pha:PSHAa1858 exonuclease V, beta chain with RecC and RecD: 5' and 3' nuclease, ATPase, recombinase, helicase; exodeoxyribonuclease V subunit beta 2108322 4173686 Patl_1757 Pseudoalteromonas atlantica T6c exodeoxyribonuclease V subunit beta YP_661332.1 2104360 D 342610 CDS YP_661333.1 109898078 4173687 2108316..2110529 1 NC_008228.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: vpa:VP2373 exodeoxyribonuclease V, 67 kDa subunit; exodeoxyribonuclease V subunit alpha 2110529 4173687 Patl_1758 Pseudoalteromonas atlantica T6c exodeoxyribonuclease V subunit alpha YP_661333.1 2108316 D 342610 CDS YP_661334.1 109898079 4173688 complement(2110518..2115323) 1 NC_008228.1 hypothetical protein 2115323 4173688 Patl_1759 Pseudoalteromonas atlantica T6c hypothetical protein YP_661334.1 2110518 R 342610 CDS YP_661335.1 109898080 4173689 2115488..2115880 1 NC_008228.1 KEGG: vch:VC1686 hypothetical protein; hypothetical protein 2115880 4173689 Patl_1760 Pseudoalteromonas atlantica T6c hypothetical protein YP_661335.1 2115488 D 342610 CDS YP_661336.1 109898081 4173690 2116000..2116494 1 NC_008228.1 KEGG: pha:PSHAb0046 putative orphan protein; hypothetical protein 2116494 4173690 Patl_1761 Pseudoalteromonas atlantica T6c hypothetical protein YP_661336.1 2116000 D 342610 CDS YP_661337.1 109898082 4173691 2116612..2118330 1 NC_008228.1 TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V aromatic amino acid beta-eliminating lyase/threonine aldolase Fe-S metabolism associated SufE; KEGG: cps:CPS_2211 putative selenocysteine lyase; SufS subfamily cysteine desulfurase 2118330 4173691 Patl_1762 Pseudoalteromonas atlantica T6c SufS subfamily cysteine desulfurase YP_661337.1 2116612 D 342610 CDS YP_661338.1 109898083 4173692 complement(2118399..2118938) 1 NC_008228.1 PFAM: isochorismatase hydrolase; KEGG: dps:DP1719 hypothetical protein; isochorismatase hydrolase 2118938 4173692 Patl_1763 Pseudoalteromonas atlantica T6c isochorismatase hydrolase YP_661338.1 2118399 R 342610 CDS YP_661339.1 109898084 4173693 2119189..2120223 1 NC_008228.1 KEGG: rso:RSc0798 putative purine nucleoside permease protein; putative purine nucleoside permease 2120223 4173693 Patl_1764 Pseudoalteromonas atlantica T6c putative purine nucleoside permease YP_661339.1 2119189 D 342610 CDS YP_661340.1 109898085 4173694 complement(2120291..2120515) 1 NC_008228.1 KEGG: cps:CPS_0070 hypothetical protein; hypothetical protein 2120515 4173694 Patl_1765 Pseudoalteromonas atlantica T6c hypothetical protein YP_661340.1 2120291 R 342610 CDS YP_661341.1 109898086 4173695 2120761..2121393 1 NC_008228.1 KEGG: ilo:IL0571 hypothetical protein; hypothetical protein 2121393 4173695 Patl_1766 Pseudoalteromonas atlantica T6c hypothetical protein YP_661341.1 2120761 D 342610 CDS YP_661342.1 109898087 4173696 2121393..2122112 1 NC_008228.1 KEGG: pha:PSHAa1929 hypothetical protein; hypothetical protein 2122112 4173696 Patl_1767 Pseudoalteromonas atlantica T6c hypothetical protein YP_661342.1 2121393 D 342610 CDS YP_661343.1 109898088 4172016 complement(2122155..2122454) 1 NC_008228.1 KEGG: pha:PSHAa0636 hypothetical protein; hypothetical protein 2122454 4172016 Patl_1768 Pseudoalteromonas atlantica T6c hypothetical protein YP_661343.1 2122155 R 342610 CDS YP_661344.1 109898089 4172017 complement(2122548..2123942) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: son:SO4457 GGDEF domain protein; diguanylate cyclase 2123942 4172017 Patl_1769 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_661344.1 2122548 R 342610 CDS YP_661345.1 109898090 4172018 complement(2124107..2125366) 1 NC_008228.1 KEGG: pha:PSHAb0237 putative glycosyltransferase; putative glycosyltransferase 2125366 4172018 Patl_1770 Pseudoalteromonas atlantica T6c putative glycosyltransferase YP_661345.1 2124107 R 342610 CDS YP_661346.1 109898091 4172019 complement(2125371..2126459) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: gsu:GSU2632 GGDEF domain protein; diguanylate cyclase 2126459 4172019 Patl_1771 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_661346.1 2125371 R 342610 CDS YP_661347.1 109898092 4172020 2126733..2127800 1 NC_008228.1 TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE-like; KEGG: rso:RS03188 2-dehydropantoate 2-reductase; 2-dehydropantoate 2-reductase 2127800 4172020 Patl_1772 Pseudoalteromonas atlantica T6c 2-dehydropantoate 2-reductase YP_661347.1 2126733 D 342610 CDS YP_661348.1 109898093 4172021 complement(2127805..2128539) 1 NC_008228.1 PFAM: protein of unknown function DUF540; KEGG: son:SO2899 cysZ protein; hypothetical protein 2128539 4172021 Patl_1773 Pseudoalteromonas atlantica T6c hypothetical protein YP_661348.1 2127805 R 342610 CDS YP_661349.1 109898094 4172022 2128778..2132272 1 NC_008228.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC protein-like; KEGG: ilo:IL1702 chromosome segregation ATPase, sms; chromosome segregation protein SMC 2132272 4172022 Patl_1774 Pseudoalteromonas atlantica T6c chromosome segregation protein SMC YP_661349.1 2128778 D 342610 CDS YP_661350.1 109898095 4172023 2132297..2133631 1 NC_008228.1 TIGRFAM: cell division protein ZipA; PFAM: ZipA-like, FtsZ-binding region; KEGG: cps:CPS_3467 putative cell division protein ZipA; cell division protein ZipA 2133631 4172023 Patl_1775 Pseudoalteromonas atlantica T6c cell division protein ZipA YP_661350.1 2132297 D 342610 CDS YP_661351.1 109898096 4172024 2133682..2135715 1 NC_008228.1 KEGG: pha:PSHAa1083 NAD-dependent DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT NAD-dependent DNA ligase zinc-finger, NAD-dependent DNA ligase C4-type NAD-dependent DNA ligase, OB-fold; SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase 2135715 4172024 Patl_1776 Pseudoalteromonas atlantica T6c NAD-dependent DNA ligase YP_661351.1 2133682 D 342610 CDS YP_661352.1 109898097 4172025 2135719..2136057 1 NC_008228.1 KEGG: ilo:IL1450 hypothetical protein; hypothetical protein 2136057 4172025 Patl_1777 Pseudoalteromonas atlantica T6c hypothetical protein YP_661352.1 2135719 D 342610 CDS YP_661353.1 109898098 4172026 complement(2136119..2136661) 1 NC_008228.1 KEGG: ilo:IL1515 hypothetical protein; hypothetical protein 2136661 4172026 Patl_1778 Pseudoalteromonas atlantica T6c hypothetical protein YP_661353.1 2136119 R 342610 CDS YP_661354.1 109898099 4172027 2136711..2138999 1 NC_008228.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase-like ComEC/Rec2-related protein; KEGG: cps:CPS_2124 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-related competence protein ComEC/Rec2 2138999 4172027 Patl_1779 Pseudoalteromonas atlantica T6c DNA internalization-related competence protein ComEC/Rec2 YP_661354.1 2136711 D 342610 CDS YP_661355.1 109898100 4172028 2139095..2140852 1 NC_008228.1 KEGG: ilo:IL1513 ABC-type multidrug transport system, ATPase and permease components; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 2140852 4172028 Patl_1780 Pseudoalteromonas atlantica T6c lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA YP_661355.1 2139095 D 342610 CDS YP_661356.1 109898101 4172029 2140915..2141832 1 NC_008228.1 KEGG: hin:HI0059 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase 2141832 4172029 Patl_1781 Pseudoalteromonas atlantica T6c tetraacyldisaccharide 4'-kinase YP_661356.1 2140915 D 342610 CDS YP_661357.1 109898102 4172030 2141841..2142044 1 NC_008228.1 PFAM: protein of unknown function DUF343; KEGG: ppr:PBPRA2383 conserved hypothetical protein; hypothetical protein 2142044 4172030 Patl_1782 Pseudoalteromonas atlantica T6c hypothetical protein YP_661357.1 2141841 D 342610 CDS YP_661358.1 109898103 4172031 2142057..2142821 1 NC_008228.1 KEGG: ecj:JW0901 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase 2142821 4172031 Patl_1783 Pseudoalteromonas atlantica T6c 3-deoxy-D-manno-octulosonate cytidylyltransferase YP_661358.1 2142057 D 342610 CDS YP_661359.1 109898104 4172032 2142878..2143876 1 NC_008228.1 catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase 2143876 4172032 Patl_1784 Pseudoalteromonas atlantica T6c D-cysteine desulfhydrase YP_661359.1 2142878 D 342610 CDS YP_661360.1 109898105 4172033 2144035..2145813 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: vvy:VV1542 GGDEF family protein; diguanylate cyclase 2145813 4172033 Patl_1785 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_661360.1 2144035 D 342610 CDS YP_661361.1 109898106 4172034 2145818..2146246 1 NC_008228.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ppr:PBPRB0044 hypothetical protein; N-acetyltransferase GCN5 2146246 4172034 Patl_1786 Pseudoalteromonas atlantica T6c N-acetyltransferase GCN5 YP_661361.1 2145818 D 342610 CDS YP_661362.1 109898107 4172035 2146266..2146766 1 NC_008228.1 KEGG: vch:VC2146 hypothetical protein; hypothetical protein 2146766 4172035 Patl_1787 Pseudoalteromonas atlantica T6c hypothetical protein YP_661362.1 2146266 D 342610 CDS YP_661363.1 109898108 4172036 complement(2146933..2147346) 1 NC_008228.1 hypothetical protein 2147346 4172036 Patl_1788 Pseudoalteromonas atlantica T6c hypothetical protein YP_661363.1 2146933 R 342610 CDS YP_661364.1 109898109 4172037 complement(2147370..2148311) 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ilo:IL1093 transcriptional regulator, LysR family; LysR family transcriptional regulator 2148311 4172037 Patl_1789 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_661364.1 2147370 R 342610 CDS YP_661365.1 109898110 4172038 2148436..2149173 1 NC_008228.1 hypothetical protein 2149173 4172038 Patl_1790 Pseudoalteromonas atlantica T6c hypothetical protein YP_661365.1 2148436 D 342610 CDS YP_661366.1 109898111 4172039 complement(2149198..2149989) 1 NC_008228.1 PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: vch:VC2311 HesA/MoeB/ThiF family protein; UBA/THIF-type NAD/FAD binding domain-containing protein 2149989 4172039 Patl_1791 Pseudoalteromonas atlantica T6c UBA/THIF-type NAD/FAD binding domain-containing protein YP_661366.1 2149198 R 342610 CDS YP_661367.1 109898112 4172040 2150274..2151695 1 NC_008228.1 KEGG: yps:YPTB1011 mannose-1-phosphate guanylyltransferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II Nucleotidyl transferase Cupin 2, conserved barrel; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 2151695 4172040 Patl_1792 Pseudoalteromonas atlantica T6c mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_661367.1 2150274 D 342610 CDS YP_661368.1 109898113 4172041 2151724..2153169 1 NC_008228.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sec:SC2105 phosphomannomutase in colanic acid gene cluster; phosphomannomutase 2153169 4172041 Patl_1793 Pseudoalteromonas atlantica T6c phosphomannomutase YP_661368.1 2151724 D 342610 CDS YP_661369.1 109898114 4172042 complement(2153263..2154543) 1 NC_008228.1 KEGG: ilo:IL1508 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; citrate synthase I 2154543 4172042 Patl_1794 Pseudoalteromonas atlantica T6c citrate synthase I YP_661369.1 2153263 R 342610 CDS YP_661370.1 109898115 4172043 2154956..2155330 1 NC_008228.1 PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: pha:PSHAa1651 putative succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhD; succinate dehydrogenase, cytochrome b subunit 2155330 4172043 Patl_1795 Pseudoalteromonas atlantica T6c succinate dehydrogenase, cytochrome b subunit YP_661370.1 2154956 D 342610 CDS YP_661371.1 109898116 4172044 2155324..2155671 1 NC_008228.1 KEGG: pha:PSHAa1650 putative succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhC; putative succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhC 2155671 4172044 Patl_1796 Pseudoalteromonas atlantica T6c putative succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhC YP_661371.1 2155324 D 342610 CDS YP_661372.1 109898117 4172045 2155672..2157441 1 NC_008228.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 2157441 sdhA 4172045 sdhA Pseudoalteromonas atlantica T6c succinate dehydrogenase flavoprotein subunit YP_661372.1 2155672 D 342610 CDS YP_661373.1 109898118 4172046 2157456..2158166 1 NC_008228.1 TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: yps:YPTB1146 succinate dehydrogenase iron-sulfur protein; succinate dehydrogenase and fumarate reductase iron-sulfur protein 2158166 4172046 Patl_1798 Pseudoalteromonas atlantica T6c succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_661373.1 2157456 D 342610 CDS YP_661374.1 109898119 4172047 2158344..2161166 1 NC_008228.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 2161166 sucA 4172047 sucA Pseudoalteromonas atlantica T6c 2-oxoglutarate dehydrogenase E1 component YP_661374.1 2158344 D 342610 CDS YP_661375.1 109898120 4172048 2161176..2162663 1 NC_008228.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment catalytic domain of components of various dehydrogenase complexes E3 binding; KEGG: pha:PSHAa1646 dihydrolipoyltranssuccinate transferase, component of the 2-oxoglutarate dehydrogenase complex; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 2162663 4172048 Patl_1800 Pseudoalteromonas atlantica T6c 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase YP_661375.1 2161176 D 342610 CDS YP_661376.1 109898121 4172049 2162787..2163956 1 NC_008228.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 2163956 sucC 4172049 sucC Pseudoalteromonas atlantica T6c succinyl-CoA synthetase subunit beta YP_661376.1 2162787 D 342610 CDS YP_661377.1 109898122 4172050 2163953..2164825 1 NC_008228.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding ATP-citrate lyase/succinyl-CoA ligase; KEGG: ilo:IL1500 succinyl-CoA synthetase, alpha subunit; succinyl-CoA synthetase subunit alpha 2164825 4172050 Patl_1802 Pseudoalteromonas atlantica T6c succinyl-CoA synthetase subunit alpha YP_661377.1 2163953 D 342610 CDS YP_661378.1 109898123 4172051 complement(2165345..2167540) 1 NC_008228.1 PFAM: peptidase S15 peptidase S9, prolyl oligopeptidase active site region; KEGG: xcv:XCV0270 putative aminopeptidase precursor; peptidase S9, prolyl oligopeptidase active site region 2167540 4172051 Patl_1803 Pseudoalteromonas atlantica T6c peptidase S9, prolyl oligopeptidase active site region YP_661378.1 2165345 R 342610 CDS YP_661379.1 109898124 4172052 complement(2167608..2169029) 1 NC_008228.1 PFAM: FAD linked oxidase-like; KEGG: sme:SMb21415 putative oxidoreductase, oxygen dependent, FAD-dependent protein; FAD linked oxidase-like protein 2169029 4172052 Patl_1804 Pseudoalteromonas atlantica T6c FAD linked oxidase-like protein YP_661379.1 2167608 R 342610 CDS YP_661380.1 109898125 4172053 2169191..2169901 1 NC_008228.1 PFAM: helix-turn-helix, HxlR type; KEGG: mlo:mlr1855 hypothetical protein; HxlR family transcriptional regulator 2169901 4172053 Patl_1805 Pseudoalteromonas atlantica T6c HxlR family transcriptional regulator YP_661380.1 2169191 D 342610 CDS YP_661381.1 109898126 4172054 complement(2169917..2171314) 1 NC_008228.1 KEGG: psp:PSPPH_3703 L-sorbosone dehydrogenase; L-sorbosone dehydrogenase 2171314 4172054 Patl_1806 Pseudoalteromonas atlantica T6c L-sorbosone dehydrogenase YP_661381.1 2169917 R 342610 CDS YP_661382.1 109898127 4172055 complement(2171621..2172403) 1 NC_008228.1 SMART: extracellular solute-binding protein, family 3; KEGG: mag:amb0186 ABC-type amino acid transport/signal transduction systems; extracellular solute-binding protein 2172403 4172055 Patl_1807 Pseudoalteromonas atlantica T6c extracellular solute-binding protein YP_661382.1 2171621 R 342610 CDS YP_661383.1 109898128 4172056 complement(2172537..2173541) 1 NC_008228.1 PFAM: luciferase-like; KEGG: ret:RHE_CH03476 probable oxidoreductase protein; luciferase-like protein 2173541 4172056 Patl_1808 Pseudoalteromonas atlantica T6c luciferase-like protein YP_661383.1 2172537 R 342610 CDS YP_661384.1 109898129 4172057 complement(2173646..2174341) 1 NC_008228.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 2174341 4172057 Patl_1809 Pseudoalteromonas atlantica T6c peptidase E YP_661384.1 2173646 R 342610 CDS YP_661385.1 109898130 4172058 complement(2174484..2177072) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC0991 TonB-dependent receptor; TonB-dependent receptor 2177072 4172058 Patl_1810 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_661385.1 2174484 R 342610 CDS YP_661386.1 109898131 4172059 2177408..2178085 1 NC_008228.1 PFAM: Phosphoglycerate mutase; KEGG: bur:Bcep18194_B3039 phosphoglycerate/bisphosphoglycerate mutase; phosphoglycerate mutase 2178085 4172059 Patl_1811 Pseudoalteromonas atlantica T6c phosphoglycerate mutase YP_661386.1 2177408 D 342610 CDS YP_661387.1 109898132 4172060 2178101..2179327 1 NC_008228.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: bja:blr2989 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase-like protein 2179327 4172060 Patl_1812 Pseudoalteromonas atlantica T6c acyl-CoA dehydrogenase-like protein YP_661387.1 2178101 D 342610 CDS YP_661388.1 109898133 4172061 2179342..2180376 1 NC_008228.1 PFAM: aminoglycoside phosphotransferase; KEGG: bur:Bcep18194_B3038 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 2180376 4172061 Patl_1813 Pseudoalteromonas atlantica T6c aminoglycoside phosphotransferase YP_661388.1 2179342 D 342610 CDS YP_661389.1 109898134 4172062 2180434..2181408 1 NC_008228.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: pfo:Pfl_5445 zinc-containing alcohol dehydrogenase superfamily; zinc-binding alcohol dehydrogenase 2181408 4172062 Patl_1814 Pseudoalteromonas atlantica T6c zinc-binding alcohol dehydrogenase YP_661389.1 2180434 D 342610 CDS YP_661390.1 109898135 4172063 complement(2181636..2182031) 1 NC_008228.1 KEGG: son:SO3645 hypothetical protein; hypothetical protein 2182031 4172063 Patl_1815 Pseudoalteromonas atlantica T6c hypothetical protein YP_661390.1 2181636 R 342610 CDS YP_661391.1 109898136 4172064 complement(2182608..2183774) 1 NC_008228.1 PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: sma:SAV611 putative beta-hydroxylase; aspartyl/asparaginyl beta-hydroxylase 2183774 4172064 Patl_1816 Pseudoalteromonas atlantica T6c aspartyl/asparaginyl beta-hydroxylase YP_661391.1 2182608 R 342610 CDS YP_661392.1 109898137 4172065 2183924..2184463 1 NC_008228.1 PFAM: protein of unknown function DUF924; KEGG: cps:CPS_2824 hypothetical protein; hypothetical protein 2184463 4172065 Patl_1817 Pseudoalteromonas atlantica T6c hypothetical protein YP_661392.1 2183924 D 342610 CDS YP_661393.1 109898138 4172066 complement(2184581..2186659) 1 NC_008228.1 PFAM: peptidase S9, prolyl oligopeptidase active site region WD40-like beta Propeller; KEGG: pha:PSHAb0063 putative peptidase; peptidase S9, prolyl oligopeptidase active site region 2186659 4172066 Patl_1818 Pseudoalteromonas atlantica T6c peptidase S9, prolyl oligopeptidase active site region YP_661393.1 2184581 R 342610 CDS YP_661394.1 109898139 4172067 2186895..2187197 1 NC_008228.1 PFAM: protein of unknown function UPF0153; KEGG: pfo:Pfl_4743 protein of unknown function UPF0153; hypothetical protein 2187197 4172067 Patl_1819 Pseudoalteromonas atlantica T6c hypothetical protein YP_661394.1 2186895 D 342610 CDS YP_661395.1 109898140 4172068 complement(2187292..2188608) 1 NC_008228.1 KEGG: hch:HCH_05761 hypothetical protein; hypothetical protein 2188608 4172068 Patl_1820 Pseudoalteromonas atlantica T6c hypothetical protein YP_661395.1 2187292 R 342610 CDS YP_661396.1 109898141 4172070 complement(2189984..2192254) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0977 TonB-dependent receptor; TonB-dependent receptor, plug 2192254 4172070 Patl_1822 Pseudoalteromonas atlantica T6c TonB-dependent receptor, plug YP_661396.1 2189984 R 342610 CDS YP_661397.1 109898142 4172071 2192680..2193705 1 NC_008228.1 PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: cps:CPS_0978 transcription regulator, LacI family; LacI family transcriptional regulator 2193705 4172071 Patl_1823 Pseudoalteromonas atlantica T6c LacI family transcriptional regulator YP_661397.1 2192680 D 342610 CDS YP_661398.1 109898143 4172072 2193807..2195054 1 NC_008228.1 PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_0981 hypothetical protein; major facilitator superfamily transporter 2195054 4172072 Patl_1824 Pseudoalteromonas atlantica T6c major facilitator superfamily transporter YP_661398.1 2193807 D 342610 CDS YP_661399.1 109898144 4172073 2195059..2196588 1 NC_008228.1 PFAM: glycoside hydrolase, family 37; KEGG: cbu:CBU_1346 trehalase; alpha,alpha-trehalase 2196588 4172073 Patl_1825 Pseudoalteromonas atlantica T6c alpha,alpha-trehalase YP_661399.1 2195059 D 342610 CDS YP_661400.1 109898145 4173011 complement(2196716..2199601) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0238 TonB-dependent receptor; TonB-dependent receptor 2199601 4173011 Patl_1826 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_661400.1 2196716 R 342610 CDS YP_661401.1 109898146 4173012 2200054..2202789 1 NC_008228.1 SMART: Peptidase M14, carboxypeptidase A; KEGG: ilo:IL0199 conserved secreted Zn-dependent enzyme from deacylase/carboxypeptidase superfamily; peptidase M14, carboxypeptidase A 2202789 4173012 Patl_1827 Pseudoalteromonas atlantica T6c peptidase M14, carboxypeptidase A YP_661401.1 2200054 D 342610 CDS YP_661402.1 109898147 4173013 complement(2202982..2203878) 1 NC_008228.1 PFAM: putative esterase; KEGG: ppr:PBPRA0783 putative esterase; carboxylesterase 2203878 4173013 Patl_1828 Pseudoalteromonas atlantica T6c carboxylesterase YP_661402.1 2202982 R 342610 CDS YP_661403.1 109898148 4173014 complement(2203878..2204996) 1 NC_008228.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: nmu:Nmul_A2272 zinc-containing alcohol dehydrogenase superfamily; alcohol dehydrogenase GroES-like protein 2204996 4173014 Patl_1829 Pseudoalteromonas atlantica T6c alcohol dehydrogenase GroES-like protein YP_661403.1 2203878 R 342610 CDS YP_661404.1 109898149 4173015 complement(2205100..2205549) 1 NC_008228.1 hypothetical protein 2205549 4173015 Patl_1830 Pseudoalteromonas atlantica T6c hypothetical protein YP_661404.1 2205100 R 342610 CDS YP_661405.1 109898150 4173016 complement(2205665..2206564) 1 NC_008228.1 PFAM: amidohydrolase 2; KEGG: cps:CPS_1174 conserved hypothetical protein; amidohydrolase 2 2206564 4173016 Patl_1831 Pseudoalteromonas atlantica T6c amidohydrolase 2 YP_661405.1 2205665 R 342610 CDS YP_661406.1 109898151 4173017 complement(2206622..2207374) 1 NC_008228.1 PFAM: short-chain dehydrogenase/reductase SDR 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: cps:CPS_1175 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 2207374 4173017 Patl_1832 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_661406.1 2206622 R 342610 CDS YP_661407.1 109898152 4173018 complement(2207450..2207899) 1 NC_008228.1 KEGG: gsu:GSU0250 hypothetical protein; hypothetical protein 2207899 4173018 Patl_1833 Pseudoalteromonas atlantica T6c hypothetical protein YP_661407.1 2207450 R 342610 CDS YP_661408.1 109898153 4173019 complement(2207902..2209323) 1 NC_008228.1 KEGG: vch:VC2620 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family MiaB-like tRNA modifying enzyme YliG; PFAM: protein of unknown function UPF0004 Radical SAM; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying enzyme YliG 2209323 4173019 Patl_1834 Pseudoalteromonas atlantica T6c MiaB-like tRNA modifying enzyme YliG YP_661408.1 2207902 R 342610 CDS YP_661409.1 109898154 4173020 complement(2209662..2215199) 1 NC_008228.1 KEGG: pst:PSPTO3229 filamentous hemagglutinin, intein-containing, putative; hypothetical protein 2215199 4173020 Patl_1835 Pseudoalteromonas atlantica T6c hypothetical protein YP_661409.1 2209662 R 342610 CDS YP_661410.1 109898155 4173021 complement(2215620..2219645) 1 NC_008228.1 PFAM: helix-turn-helix, AraC type response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: bth:BT3334 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system'); two component AraC family transcriptional regulator 2219645 4173021 Patl_1836 Pseudoalteromonas atlantica T6c two component AraC family transcriptional regulator YP_661410.1 2215620 R 342610 CDS YP_661411.1 109898156 4173022 complement(2220064..2221656) 1 NC_008228.1 PFAM: L-lactate permease; KEGG: ppr:PBPRA2223 hypothetical L-lactate permease (LctP); L-lactate permease 2221656 4173022 Patl_1837 Pseudoalteromonas atlantica T6c L-lactate permease YP_661411.1 2220064 R 342610 CDS YP_661412.1 109898157 4173023 2222121..2222408 1 NC_008228.1 KEGG: dps:DP1779 hypothetical protein; hypothetical protein 2222408 4173023 Patl_1838 Pseudoalteromonas atlantica T6c hypothetical protein YP_661412.1 2222121 D 342610 CDS YP_661413.1 109898158 4173024 2222670..2225138 1 NC_008228.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: xac:XAC1186 excinuclease ABC subunit A; excinuclease ABC subunit A 2225138 4173024 Patl_1839 Pseudoalteromonas atlantica T6c excinuclease ABC subunit A YP_661413.1 2222670 D 342610 CDS YP_661414.1 109898159 4173025 2225731..2228373 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: xcb:XC_2484 TonB-dependent receptor; TonB-dependent receptor 2228373 4173025 Patl_1840 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_661414.1 2225731 D 342610 CDS YP_661415.1 109898160 4173026 2228429..2230093 1 NC_008228.1 PFAM: sulfatase; KEGG: rba:RB2135 heparan N-sulfatase; sulfatase 2230093 4173026 Patl_1841 Pseudoalteromonas atlantica T6c sulfatase YP_661415.1 2228429 D 342610 CDS YP_661416.1 109898161 4173027 2230172..2231752 1 NC_008228.1 PFAM: sulfatase; KEGG: bth:BT3333 arylsulfatase A precursor (ASA); sulfatase 2231752 4173027 Patl_1842 Pseudoalteromonas atlantica T6c sulfatase YP_661416.1 2230172 D 342610 CDS YP_661417.1 109898162 4173028 complement(2232104..2232943) 1 NC_008228.1 TIGRFAM: integron integrase; PFAM: phage integrase; KEGG: pha:PSHAa1461 integrase; integron integrase 2232943 4173028 Patl_1843 Pseudoalteromonas atlantica T6c integron integrase YP_661417.1 2232104 R 342610 CDS YP_661418.1 109898163 4173029 2233243..2233686 1 NC_008228.1 hypothetical protein 2233686 4173029 Patl_1844 Pseudoalteromonas atlantica T6c hypothetical protein YP_661418.1 2233243 D 342610 CDS YP_661419.1 109898164 4173030 complement(2233717..2234673) 1 NC_008228.1 PFAM: transposase, IS111A/IS1328/IS1533 transposase IS116/IS110/IS902; KEGG: cps:CPS_2742 ISCps7, transposase; transposase IS116/IS110/IS902 2234673 4173030 Patl_1845 Pseudoalteromonas atlantica T6c transposase IS116/IS110/IS902 YP_661419.1 2233717 R 342610 CDS YP_661420.1 109898165 4173031 complement(2235002..2236210) 1 NC_008228.1 PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase; transposase, IS4 2236210 4173031 Patl_1846 Pseudoalteromonas atlantica T6c transposase, IS4 YP_661420.1 2235002 R 342610 CDS YP_661421.1 109898166 4173032 2236333..2236671 1 NC_008228.1 hypothetical protein 2236671 4173032 Patl_1847 Pseudoalteromonas atlantica T6c hypothetical protein YP_661421.1 2236333 D 342610 CDS YP_661422.1 109898167 4173033 complement(2237053..2238036) 1 NC_008228.1 PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAb0050 hypothetical protein; hypothetical protein 2238036 4173033 Patl_1848 Pseudoalteromonas atlantica T6c hypothetical protein YP_661422.1 2237053 R 342610 CDS YP_661423.1 109898168 4173034 complement(2238080..2238532) 1 NC_008228.1 KEGG: ppr:PBPRB1699 hypothetical transposase; putative transposase 2238532 4173034 Patl_1849 Pseudoalteromonas atlantica T6c putative transposase YP_661423.1 2238080 R 342610 CDS YP_661424.1 109898169 4173035 2238594..2238938 1 NC_008228.1 hypothetical protein 2238938 4173035 Patl_1850 Pseudoalteromonas atlantica T6c hypothetical protein YP_661424.1 2238594 D 342610 CDS YP_661425.1 109898170 4173036 2239658..2240572 1 NC_008228.1 PFAM: protein of unknown function DUF1080; KEGG: nar:Saro_0775 protein of unknown function DUF1080; hypothetical protein 2240572 4173036 Patl_1851 Pseudoalteromonas atlantica T6c hypothetical protein YP_661425.1 2239658 D 342610 CDS YP_661426.1 109898171 4173037 complement(2240904..2242820) 1 NC_008228.1 PFAM: glycoside hydrolase family 2, sugar binding; KEGG: bfr:BF3493 sialic acid-specific 9-O-acetylesterase; glycoside hydrolase 2242820 4173037 Patl_1852 Pseudoalteromonas atlantica T6c glycoside hydrolase YP_661426.1 2240904 R 342610 CDS YP_661427.1 109898172 4173038 complement(2242955..2243422) 1 NC_008228.1 KEGG: sco:SCO5300 hypothetical protein; hypothetical protein 2243422 4173038 Patl_1853 Pseudoalteromonas atlantica T6c hypothetical protein YP_661427.1 2242955 R 342610 CDS YP_661428.1 109898173 4173039 complement(2243493..2243783) 1 NC_008228.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 2243783 4173039 Patl_1854 Pseudoalteromonas atlantica T6c YciI-like protein YP_661428.1 2243493 R 342610 CDS YP_661429.1 109898174 4173040 complement(2244095..2245858) 1 NC_008228.1 PFAM: Pyrrolo-quinoline quinone; KEGG: cps:CPS_1887 quinoprotein alcohol dehydrogenase; Pyrrolo-quinoline quinone 2245858 4173040 Patl_1855 Pseudoalteromonas atlantica T6c Pyrrolo-quinoline quinone YP_661429.1 2244095 R 342610 CDS YP_661430.1 109898175 4173041 complement(2246056..2246940) 1 NC_008228.1 SMART: extracellular solute-binding protein, family 3; KEGG: cps:CPS_1889 hypothetical protein; extracellular solute-binding protein 2246940 4173041 Patl_1856 Pseudoalteromonas atlantica T6c extracellular solute-binding protein YP_661430.1 2246056 R 342610 CDS YP_661431.1 109898176 4173042 complement(2246927..2247367) 1 NC_008228.1 KEGG: cps:CPS_1890 cytochrome c550; cytochrome c550 2247367 4173042 Patl_1857 Pseudoalteromonas atlantica T6c cytochrome c550 YP_661431.1 2246927 R 342610 CDS YP_661432.1 109898177 4173043 2247667..2248884 1 NC_008228.1 KEGG: cps:CPS_1891 hypothetical protein; hypothetical protein 2248884 4173043 Patl_1858 Pseudoalteromonas atlantica T6c hypothetical protein YP_661432.1 2247667 D 342610 CDS YP_661433.1 109898178 4173044 2248911..2249900 1 NC_008228.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: cps:CPS_1892 hypothetical protein; hypothetical protein 2249900 4173044 Patl_1859 Pseudoalteromonas atlantica T6c hypothetical protein YP_661433.1 2248911 D 342610 CDS YP_661434.1 109898179 4173045 2249897..2250754 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: cps:CPS_1893 ABC transporter, ATP-binding protein; ABC transporter-like protein 2250754 4173045 Patl_1860 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_661434.1 2249897 D 342610 CDS YP_661435.1 109898180 4173046 2250751..2251527 1 NC_008228.1 PFAM: ABC-2 type transporter; KEGG: cps:CPS_1894 putative daunorubicin resistance ABC transporter, permease protein; ABC transporter 2251527 4173046 Patl_1861 Pseudoalteromonas atlantica T6c ABC transporter YP_661435.1 2250751 D 342610 CDS YP_661436.1 109898181 4173047 2251723..2254044 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_1926 TonB-dependent receptor; TonB-dependent receptor 2254044 4173047 Patl_1862 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_661436.1 2251723 D 342610 CDS YP_661437.1 109898182 4173048 2254044..2256389 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_1927 TonB dependent receptor; TonB-dependent receptor 2256389 4173048 Patl_1863 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_661437.1 2254044 D 342610 CDS YP_661438.1 109898183 4173049 2256483..2257523 1 NC_008228.1 KEGG: cps:CPS_1928 putative sulfonate ABC transporter, periplasmic sulfonate-binding protein; putative sulfonate ABC transporter, periplasmic sulfonate-binding protein 2257523 4173049 Patl_1864 Pseudoalteromonas atlantica T6c putative sulfonate ABC transporter, periplasmic sulfonate-binding protein YP_661438.1 2256483 D 342610 CDS YP_661439.1 109898184 4173050 2257576..2258346 1 NC_008228.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cps:CPS_1929 putative sulfonate ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2258346 4173050 Patl_1865 Pseudoalteromonas atlantica T6c binding-protein-dependent transport system inner membrane protein YP_661439.1 2257576 D 342610 CDS YP_661440.1 109898185 4173051 2258339..2259079 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: cps:CPS_1930 putative sulfonate ABC transporter, ATP-binding protein; ABC transporter-like protein 2259079 4173051 Patl_1866 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_661440.1 2258339 D 342610 CDS YP_661441.1 109898186 4173052 2259115..2260461 1 NC_008228.1 KEGG: cps:CPS_1702 hypothetical protein; hypothetical protein 2260461 4173052 Patl_1867 Pseudoalteromonas atlantica T6c hypothetical protein YP_661441.1 2259115 D 342610 CDS YP_661442.1 109898187 4173053 2260647..2261804 1 NC_008228.1 KEGG: cps:CPS_1931 hypothetical protein; hypothetical protein 2261804 4173053 Patl_1868 Pseudoalteromonas atlantica T6c hypothetical protein YP_661442.1 2260647 D 342610 CDS YP_661443.1 109898188 4173054 2261841..2262161 1 NC_008228.1 PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: pca:Pcar_0984 hypothetical protein; ethyl tert-butyl ether degradation EthD 2262161 4173054 Patl_1869 Pseudoalteromonas atlantica T6c ethyl tert-butyl ether degradation EthD YP_661443.1 2261841 D 342610 CDS YP_661444.1 109898189 4173055 2262298..2262954 1 NC_008228.1 PFAM: regulatory protein, LuxR response regulator receiver; KEGG: cps:CPS_1932 DNA-binding response regulator; two component LuxR family transcriptional regulator 2262954 4173055 Patl_1870 Pseudoalteromonas atlantica T6c two component LuxR family transcriptional regulator YP_661444.1 2262298 D 342610 CDS YP_661445.1 109898190 4173056 complement(2262951..2265521) 1 NC_008228.1 KEGG: cps:CPS_1882 sensory box sensor histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4; SMART: PAS PAC motif Response regulator receiver; PAS/PAC sensor hybrid histidine kinase 2265521 4173056 Patl_1871 Pseudoalteromonas atlantica T6c PAS/PAC sensor hybrid histidine kinase YP_661445.1 2262951 R 342610 CDS YP_661446.1 109898191 4173057 complement(2265518..2266663) 1 NC_008228.1 PFAM: Domain of unknown function DUF1745; KEGG: cps:CPS_1883 hypothetical protein; hypothetical protein 2266663 4173057 Patl_1872 Pseudoalteromonas atlantica T6c hypothetical protein YP_661446.1 2265518 R 342610 CDS YP_661447.1 109898192 4173058 complement(2266877..2268955) 1 NC_008228.1 PFAM: FMN-binding; KEGG: cps:CPS_1884 putative regulatory protein NosR; FMN-binding protein 2268955 4173058 Patl_1873 Pseudoalteromonas atlantica T6c FMN-binding protein YP_661447.1 2266877 R 342610 CDS YP_661448.1 109898193 4173059 complement(2269022..2270542) 1 NC_008228.1 PFAM: aldehyde dehydrogenase; KEGG: cps:CPS_1885 aldehyde dehydrogenase family protein; aldehyde dehydrogenase 2270542 4173059 Patl_1874 Pseudoalteromonas atlantica T6c aldehyde dehydrogenase YP_661448.1 2269022 R 342610 CDS YP_661449.1 109898194 4173060 complement(2270838..2271473) 1 NC_008228.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase Male sterility-like; KEGG: pha:PSHAa2082 hypothetical protein; NAD-dependent epimerase/dehydratase 2271473 4173060 Patl_1875 Pseudoalteromonas atlantica T6c NAD-dependent epimerase/dehydratase YP_661449.1 2270838 R 342610 CDS YP_661450.1 109898195 4173061 2271868..2272224 1 NC_008228.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3403 ribosomal subunit interface protein; sigma 54 modulation protein/ribosomal protein S30EA 2272224 4173061 Patl_1876 Pseudoalteromonas atlantica T6c sigma 54 modulation protein/ribosomal protein S30EA YP_661450.1 2271868 D 342610 CDS YP_661451.1 109898196 4173062 2272426..2272656 1 NC_008228.1 KEGG: pha:PSHAa2212 hypothetical protein; hypothetical protein 2272656 4173062 Patl_1877 Pseudoalteromonas atlantica T6c hypothetical protein YP_661451.1 2272426 D 342610 CDS YP_661452.1 109898197 4173063 complement(2272764..2273681) 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pae:PA2551 probable transcriptional regulator; LysR family transcriptional regulator 2273681 4173063 Patl_1878 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_661452.1 2272764 R 342610 CDS YP_661453.1 109898198 4173064 complement(2273919..2275316) 1 NC_008228.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2275316 asnC 4173064 asnC Pseudoalteromonas atlantica T6c asparaginyl-tRNA synthetase YP_661453.1 2273919 R 342610 CDS YP_661454.1 109898199 4173065 2275574..2275960 1 NC_008228.1 KEGG: ilo:IL1326 hypothetical protein; hypothetical protein 2275960 4173065 Patl_1880 Pseudoalteromonas atlantica T6c hypothetical protein YP_661454.1 2275574 D 342610 CDS YP_661455.1 109898200 4173066 2276150..2276461 1 NC_008228.1 hypothetical protein 2276461 4173066 Patl_1881 Pseudoalteromonas atlantica T6c hypothetical protein YP_661455.1 2276150 D 342610 CDS YP_661456.1 109898201 4173067 complement(2276605..2277636) 1 NC_008228.1 TIGRFAM: cysteine synthases cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: mba:Mbar_A2422 cysteine synthase; cysteine synthase-like protein 2277636 4173067 Patl_1882 Pseudoalteromonas atlantica T6c cysteine synthase-like protein YP_661456.1 2276605 R 342610 CDS YP_661457.1 109898202 4173068 2277778..2278230 1 NC_008228.1 PFAM: regulatory proteins, AsnC/Lrp; KEGG: reu:Reut_A0453 regulatory proteins, AsnC/Lrp; AsnC family transcriptional regulator 2278230 4173068 Patl_1883 Pseudoalteromonas atlantica T6c AsnC family transcriptional regulator YP_661457.1 2277778 D 342610 CDS YP_661458.1 109898203 4173069 2278396..2279769 1 NC_008228.1 PFAM: Na+/H+ antiporter NhaC; KEGG: cps:CPS_4723 Na+/H+ antiporter family protein; Na+/H+ antiporter NhaC 2279769 4173069 Patl_1884 Pseudoalteromonas atlantica T6c Na+/H+ antiporter NhaC YP_661458.1 2278396 D 342610 CDS YP_661459.1 109898204 4172730 2279874..2281577 1 NC_008228.1 KEGG: tcx:Tcr_1715 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 2281577 4172730 Patl_1885 Pseudoalteromonas atlantica T6c gamma-glutamyltransferase YP_661459.1 2279874 D 342610 CDS YP_661460.1 109898205 4172731 complement(2281737..2282477) 1 NC_008228.1 TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; KEGG: cps:CPS_3794 UDP-2,3-diacylglucosamine hydrolase; UDP-2,3-diacylglucosamine hydrolase 2282477 4172731 Patl_1886 Pseudoalteromonas atlantica T6c UDP-2,3-diacylglucosamine hydrolase YP_661460.1 2281737 R 342610 CDS YP_661461.1 109898206 4172732 complement(2282531..2283025) 1 NC_008228.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: yps:YPTB1034 peptidyl-prolyl cis-trans isomerase B; peptidyl-prolyl isomerase 2283025 4172732 Patl_1887 Pseudoalteromonas atlantica T6c peptidyl-prolyl isomerase YP_661461.1 2282531 R 342610 CDS YP_661462.1 109898207 4172733 2283211..2284605 1 NC_008228.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2284605 cysS 4172733 cysS Pseudoalteromonas atlantica T6c cysteinyl-tRNA synthetase YP_661462.1 2283211 D 342610 CDS YP_661463.1 109898208 4172734 2285138..2286502 1 NC_008228.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: pfo:Pfl_1081 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 2286502 4172734 Patl_1889 Pseudoalteromonas atlantica T6c filamentation induced by cAMP protein fic YP_661463.1 2285138 D 342610 CDS YP_661464.1 109898209 4172735 complement(2287170..2287613) 1 NC_008228.1 KEGG: pha:PSHAa1883 hypothetical protein; hypothetical protein 2287613 4172735 Patl_1890 Pseudoalteromonas atlantica T6c hypothetical protein YP_661464.1 2287170 R 342610 CDS YP_661465.1 109898210 4172736 complement(2287692..2287973) 1 NC_008228.1 PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAa1474 hypothetical protein; hypothetical protein 2287973 4172736 Patl_1891 Pseudoalteromonas atlantica T6c hypothetical protein YP_661465.1 2287692 R 342610 CDS YP_661466.1 109898211 4172737 complement(2288083..2288232) 1 NC_008228.1 KEGG: pha:PSHAb0050 hypothetical protein; hypothetical protein 2288232 4172737 Patl_1892 Pseudoalteromonas atlantica T6c hypothetical protein YP_661466.1 2288083 R 342610 CDS YP_661467.1 109898212 4172738 2289471..2289971 1 NC_008228.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_1846 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 2289971 4172738 Patl_1893 Pseudoalteromonas atlantica T6c glyoxalase/bleomycin resistance protein/dioxygenase YP_661467.1 2289471 D 342610 CDS YP_661468.1 109898213 4172739 complement(2290228..2291889) 1 NC_008228.1 PFAM: Peptidoglycan-binding LysM Lytic transglycosylase, catalytic; KEGG: cps:CPS_1998 putative membrane-bound lytic murein transglycosylase; lytic transglycosylase catalytic subunit 2291889 4172739 Patl_1894 Pseudoalteromonas atlantica T6c lytic transglycosylase catalytic subunit YP_661468.1 2290228 R 342610 CDS YP_661469.1 109898214 4172740 complement(2291918..2292691) 1 NC_008228.1 PFAM: beta-lactamase-like; KEGG: neu:NE0138 metallo-beta-lactamase superfamily; hydroxyacylglutathione hydrolase 2292691 4172740 Patl_1895 Pseudoalteromonas atlantica T6c hydroxyacylglutathione hydrolase YP_661469.1 2291918 R 342610 CDS YP_661470.1 109898215 4172741 2292849..2293598 1 NC_008228.1 KEGG: cps:CPS_2000 hypothetical protein; hypothetical protein 2293598 4172741 Patl_1896 Pseudoalteromonas atlantica T6c hypothetical protein YP_661470.1 2292849 D 342610 CDS YP_661471.1 109898216 4172742 complement(2293695..2295722) 1 NC_008228.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2295722 metG 4172742 metG Pseudoalteromonas atlantica T6c methionyl-tRNA synthetase YP_661471.1 2293695 R 342610 CDS YP_661472.1 109898217 4172743 2295841..2296905 1 NC_008228.1 KEGG: ppr:PBPRA1169 hypothetical Mrp protein (ATPases involved in chromosome partitioning); MRP family ATP-binding protein 2296905 4172743 Patl_1898 Pseudoalteromonas atlantica T6c MRP family ATP-binding protein YP_661472.1 2295841 D 342610 CDS YP_661473.1 109898218 4172744 2297011..2297610 1 NC_008228.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 2297610 dcd 4172744 dcd Pseudoalteromonas atlantica T6c deoxycytidine triphosphate deaminase YP_661473.1 2297011 D 342610 CDS YP_661474.1 109898219 4172745 complement(2297708..2298658) 1 NC_008228.1 PFAM: helix-turn-helix, AraC type; KEGG: vvy:VVA0468 AraC-type DNA-binding domain-containing protein; AraC family transcriptional regulator 2298658 4172745 Patl_1900 Pseudoalteromonas atlantica T6c AraC family transcriptional regulator YP_661474.1 2297708 R 342610 CDS YP_661475.1 109898220 4172746 2298773..2299240 1 NC_008228.1 PFAM: YHS; KEGG: cps:CPS_3397 hypothetical protein; hypothetical protein 2299240 4172746 Patl_1901 Pseudoalteromonas atlantica T6c hypothetical protein YP_661475.1 2298773 D 342610 CDS YP_661476.1 109898221 4172748 complement(2300730..2301173) 1 NC_008228.1 KEGG: son:SO1890 hypothetical protein; hypothetical protein 2301173 4172748 Patl_1902 Pseudoalteromonas atlantica T6c hypothetical protein YP_661476.1 2300730 R 342610 CDS YP_661477.1 109898222 4172750 2302176..2304242 1 NC_008228.1 KEGG: rba:RB3421 probable beta-agarase [precursor]; agarase 2304242 4172750 Patl_1904 Pseudoalteromonas atlantica T6c agarase YP_661477.1 2302176 D 342610 CDS YP_661478.1 109898223 4172752 2305171..2306280 1 NC_008228.1 PFAM: beta-lactamase; KEGG: bca:BCE2294 penicillin-binding protein, putative; beta-lactamase 2306280 4172752 Patl_1906 Pseudoalteromonas atlantica T6c beta-lactamase YP_661478.1 2305171 D 342610 CDS YP_661479.1 109898224 4172753 2307306..2307635 1 NC_008228.1 PFAM: Thioredoxin domain; KEGG: ilo:IL2069 thioredoxin related protein; thioredoxin domain-containing protein 2307635 4172753 Patl_1907 Pseudoalteromonas atlantica T6c thioredoxin domain-containing protein YP_661479.1 2307306 D 342610 CDS YP_661480.1 109898225 4172754 2307700..2309031 1 NC_008228.1 hypothetical protein 2309031 4172754 Patl_1908 Pseudoalteromonas atlantica T6c hypothetical protein YP_661480.1 2307700 D 342610 CDS YP_661481.1 109898226 4172755 complement(2309153..2309944) 1 NC_008228.1 PFAM: helix-turn-helix, AraC type; KEGG: pha:PSHAa2408 transcriptional regulator (AraC/XylS); AraC family transcriptional regulator 2309944 4172755 Patl_1909 Pseudoalteromonas atlantica T6c AraC family transcriptional regulator YP_661481.1 2309153 R 342610 CDS YP_661482.1 109898227 4172756 2310185..2311489 1 NC_008228.1 PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa2409 permease; major facilitator superfamily transporter 2311489 4172756 Patl_1910 Pseudoalteromonas atlantica T6c major facilitator superfamily transporter YP_661482.1 2310185 D 342610 CDS YP_661483.1 109898228 4172757 2311767..2313143 1 NC_008228.1 PFAM: aldehyde dehydrogenase; KEGG: pha:PSHAa2402 succinate-semialdehyde dehydrogenase; aldehyde dehydrogenase 2313143 4172757 Patl_1911 Pseudoalteromonas atlantica T6c aldehyde dehydrogenase YP_661483.1 2311767 D 342610 CDS YP_661484.1 109898229 4172758 complement(2313351..2315942) 1 NC_008228.1 PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: pha:PSHAa2492 aminopeptidase; peptidase M1, membrane alanine aminopeptidase 2315942 4172758 Patl_1912 Pseudoalteromonas atlantica T6c peptidase M1, membrane alanine aminopeptidase YP_661484.1 2313351 R 342610 CDS YP_661485.1 109898230 4172759 complement(2316179..2317828) 1 NC_008228.1 PFAM: AMP-dependent synthetase and ligase; KEGG: reu:Reut_A1398 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2317828 4172759 Patl_1913 Pseudoalteromonas atlantica T6c AMP-dependent synthetase and ligase YP_661485.1 2316179 R 342610 CDS YP_661486.1 109898231 4172760 complement(2317906..2318673) 1 NC_008228.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bur:Bcep18194_B3036 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2318673 4172760 Patl_1914 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_661486.1 2317906 R 342610 CDS YP_661487.1 109898232 4172761 complement(2318688..2319608) 1 NC_008228.1 PFAM: alpha/beta hydrolase fold; KEGG: ccr:CC1175 haloalkane dehalogenase, putative; haloalkane dehalogenase 2319608 4172761 Patl_1915 Pseudoalteromonas atlantica T6c haloalkane dehalogenase YP_661487.1 2318688 R 342610 CDS YP_661488.1 109898233 4172762 2319872..2321980 1 NC_008228.1 PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: ccr:CC3189 fatty oxidation complex, alpha subunit; 3-hydroxyacyl-CoA dehydrogenase 2321980 4172762 Patl_1916 Pseudoalteromonas atlantica T6c 3-hydroxyacyl-CoA dehydrogenase YP_661488.1 2319872 D 342610 CDS YP_661489.1 109898234 4172763 2322012..2323196 1 NC_008228.1 KEGG: eli:ELI_12090 putative 3-ketoacyl-CoA thiolase/acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 2323196 4172763 Patl_1917 Pseudoalteromonas atlantica T6c acetyl-CoA acetyltransferase YP_661489.1 2322012 D 342610 CDS YP_661490.1 109898235 4172764 2323244..2325046 1 NC_008228.1 PFAM: acyl-CoA dehydrogenase-like; KEGG: hch:HCH_01686 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase-like protein 2325046 4172764 Patl_1918 Pseudoalteromonas atlantica T6c acyl-CoA dehydrogenase-like protein YP_661490.1 2323244 D 342610 CDS YP_661491.1 109898236 4172765 2325128..2326057 1 NC_008228.1 PFAM: alpha/beta hydrolase fold; KEGG: reu:Reut_A1416 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2326057 4172765 Patl_1919 Pseudoalteromonas atlantica T6c alpha/beta hydrolase fold protein YP_661491.1 2325128 D 342610 CDS YP_661492.1 109898237 4172766 complement(2326160..2327200) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: pha:PSHAb0368 putative GGDEF domain membrane protein; diguanylate cyclase 2327200 4172766 Patl_1920 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_661492.1 2326160 R 342610 CDS YP_661493.1 109898238 4172767 complement(2327535..2327930) 1 NC_008228.1 KEGG: son:SO3645 hypothetical protein; hypothetical protein 2327930 4172767 Patl_1921 Pseudoalteromonas atlantica T6c hypothetical protein YP_661493.1 2327535 R 342610 CDS YP_661494.1 109898239 4172768 complement(2328219..2329391) 1 NC_008228.1 PFAM: Phytanoyl-CoA dioxygenase; phytanoyl-CoA dioxygenase 2329391 4172768 Patl_1922 Pseudoalteromonas atlantica T6c phytanoyl-CoA dioxygenase YP_661494.1 2328219 R 342610 CDS YP_661495.1 109898240 4172769 2329515..2330186 1 NC_008228.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 2330186 4172769 Patl_1923 Pseudoalteromonas atlantica T6c TetR family transcriptional regulator YP_661495.1 2329515 D 342610 CDS YP_661496.1 109898241 4172770 2330428..2331174 1 NC_008228.1 KEGG: dvu:DVU0852 extracellular solute-binding protein, putative; hypothetical protein 2331174 4172770 Patl_1924 Pseudoalteromonas atlantica T6c hypothetical protein YP_661496.1 2330428 D 342610 CDS YP_661497.1 109898242 4172771 2331263..2331676 1 NC_008228.1 hypothetical protein 2331676 4172771 Patl_1925 Pseudoalteromonas atlantica T6c hypothetical protein YP_661497.1 2331263 D 342610 CDS YP_661498.1 109898243 4172772 2331753..2332709 1 NC_008228.1 hypothetical protein 2332709 4172772 Patl_1926 Pseudoalteromonas atlantica T6c hypothetical protein YP_661498.1 2331753 D 342610 CDS YP_661499.1 109898244 4172773 complement(2332720..2333946) 1 NC_008228.1 PFAM: major facilitator superfamily MFS_1; KEGG: tth:TTC1722 multidrug resistance protein 2; major facilitator superfamily transporter 2333946 4172773 Patl_1927 Pseudoalteromonas atlantica T6c major facilitator superfamily transporter YP_661499.1 2332720 R 342610 CDS YP_661500.1 109898245 4172774 complement(2334071..2335174) 1 NC_008228.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pfl:PFL_0942 NADH-dependent flavin oxidoreductase, Oye family; NADH:flavin oxidoreductase 2335174 4172774 Patl_1928 Pseudoalteromonas atlantica T6c NADH:flavin oxidoreductase YP_661500.1 2334071 R 342610 CDS YP_661501.1 109898246 4172775 complement(2335266..2335886) 1 NC_008228.1 PFAM: regulatory protein, TetR; KEGG: hch:HCH_05799 transcriptional regulator; TetR family transcriptional regulator 2335886 4172775 Patl_1929 Pseudoalteromonas atlantica T6c TetR family transcriptional regulator YP_661501.1 2335266 R 342610 CDS YP_661502.1 109898247 4172776 complement(2336793..2337062) 1 NC_008228.1 PFAM: RNA-binding region RNP-1 (RNA recognition motif); KEGG: ppr:PBPRB1959 hypothetical protein; RNA-binding region RNP-1 2337062 4172776 Patl_1930 Pseudoalteromonas atlantica T6c RNA-binding region RNP-1 YP_661502.1 2336793 R 342610 CDS YP_661503.1 109898248 4172778 2337720..2339606 1 NC_008228.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2339606 4172778 Patl_1931 Pseudoalteromonas atlantica T6c thiamine biosynthesis protein ThiC YP_661503.1 2337720 D 342610 CDS YP_661504.1 109898249 4172779 2339611..2340843 1 NC_008228.1 PFAM: FAD dependent oxidoreductase; KEGG: tcx:Tcr_0147 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2340843 4172779 Patl_1932 Pseudoalteromonas atlantica T6c FAD dependent oxidoreductase YP_661504.1 2339611 D 342610 CDS YP_661505.1 109898250 4172780 2340837..2341034 1 NC_008228.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS; KEGG: pha:PSHAa0482 ThiS protein; thiamine biosynthesis protein ThiS 2341034 4172780 Patl_1933 Pseudoalteromonas atlantica T6c thiamine biosynthesis protein ThiS YP_661505.1 2340837 D 342610 CDS YP_661506.1 109898251 4172781 2341036..2341836 1 NC_008228.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 2341836 thiG 4172781 thiG Pseudoalteromonas atlantica T6c thiazole synthase YP_661506.1 2341036 D 342610 CDS YP_661507.1 109898252 4172782 2341839..2343677 1 NC_008228.1 KEGG: lpp:lpp1526 thiamine-phosphate pyrophosphorylase / phosphomethylpyrimidine kinase; TIGRFAM: thiamine-phosphate pyrophosphorylase phosphomethylpyrimidine kinase; PFAM: thiamine monophosphate synthase Phosphomethylpyrimidine kinase type-1; thiamine-phosphate pyrophosphorylase 2343677 4172782 Patl_1935 Pseudoalteromonas atlantica T6c thiamine-phosphate pyrophosphorylase YP_661507.1 2341839 D 342610 CDS YP_661508.1 109898253 4172783 2343674..2344897 1 NC_008228.1 PFAM: UBA/THIF-type NAD/FAD binding fold MoeZ/MoeB; SMART: Rhodanese-like; KEGG: yps:YPTB0561 putative protein involved in molybdopterin biosynthesis; UBA/THIF-type NAD/FAD binding domain-containing protein 2344897 4172783 Patl_1936 Pseudoalteromonas atlantica T6c UBA/THIF-type NAD/FAD binding domain-containing protein YP_661508.1 2343674 D 342610 CDS YP_661509.1 109898254 4172784 2345055..2345432 1 NC_008228.1 KEGG: vch:VCA0645 hypothetical protein; hypothetical protein 2345432 4172784 Patl_1937 Pseudoalteromonas atlantica T6c hypothetical protein YP_661509.1 2345055 D 342610 CDS YP_661510.1 109898255 4172785 2346243..2349158 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0993 TonB-dependent receptor; TonB-dependent receptor 2349158 4172785 Patl_1938 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_661510.1 2346243 D 342610 CDS YP_661511.1 109898256 4172074 2349296..2350849 1 NC_008228.1 PFAM: tryptophan halogenase; KEGG: eli:ELI_03185 tryptophan halogenase, putative; tryptophan halogenase 2350849 4172074 Patl_1939 Pseudoalteromonas atlantica T6c tryptophan halogenase YP_661511.1 2349296 D 342610 CDS YP_661512.1 109898257 4172075 2351338..2354370 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_1693 TonB-dependent receptor; TonB-dependent receptor 2354370 4172075 Patl_1940 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_661512.1 2351338 D 342610 CDS YP_661513.1 109898258 4172076 2354466..2358818 1 NC_008228.1 KEGG: cps:CPS_1694 putative pullulanase; TIGRFAM: alpha-1,6-glucosidases, pullulanase-type; PFAM: glycoside hydrolase, family 13-like; pullulanase-type alpha-1,6-glucosidase 2358818 4172076 Patl_1941 Pseudoalteromonas atlantica T6c pullulanase-type alpha-1,6-glucosidase YP_661513.1 2354466 D 342610 CDS YP_661514.1 109898259 4172077 2359737..2360270 1 NC_008228.1 hypothetical protein 2360270 4172077 Patl_1942 Pseudoalteromonas atlantica T6c hypothetical protein YP_661514.1 2359737 D 342610 CDS YP_661515.1 109898260 4172078 complement(2360378..2361640) 1 NC_008228.1 PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase; transposase, IS4 2361640 4172078 Patl_1943 Pseudoalteromonas atlantica T6c transposase, IS4 YP_661515.1 2360378 R 342610 CDS YP_661516.1 109898261 4172079 2361714..2362145 1 NC_008228.1 hypothetical protein 2362145 4172079 Patl_1944 Pseudoalteromonas atlantica T6c hypothetical protein YP_661516.1 2361714 D 342610 CDS YP_661517.1 109898262 4172080 complement(2362261..2363523) 1 NC_008228.1 PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase; transposase, IS4 2363523 4172080 Patl_1945 Pseudoalteromonas atlantica T6c transposase, IS4 YP_661517.1 2362261 R 342610 CDS YP_661518.1 109898263 4172081 2363610..2363864 1 NC_008228.1 hypothetical protein 2363864 4172081 Patl_1946 Pseudoalteromonas atlantica T6c hypothetical protein YP_661518.1 2363610 D 342610 CDS YP_661519.1 109898264 4172082 2363952..2364404 1 NC_008228.1 hypothetical protein 2364404 4172082 Patl_1947 Pseudoalteromonas atlantica T6c hypothetical protein YP_661519.1 2363952 D 342610 CDS YP_661520.1 109898265 4172083 complement(2364536..2365519) 1 NC_008228.1 PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAb0050 hypothetical protein; hypothetical protein 2365519 4172083 Patl_1948 Pseudoalteromonas atlantica T6c hypothetical protein YP_661520.1 2364536 R 342610 CDS YP_661521.1 109898266 4172084 complement(2365562..2366236) 1 NC_008228.1 KEGG: ppr:PBPRB1072 hypothetical transposase; putative transposase 2366236 4172084 Patl_1949 Pseudoalteromonas atlantica T6c putative transposase YP_661521.1 2365562 R 342610 CDS YP_661522.1 109898267 4172085 complement(2366890..2367846) 1 NC_008228.1 PFAM: transposase, IS111A/IS1328/IS1533 transposase IS116/IS110/IS902; KEGG: cps:CPS_2742 ISCps7, transposase; transposase IS116/IS110/IS902 2367846 4172085 Patl_1950 Pseudoalteromonas atlantica T6c transposase IS116/IS110/IS902 YP_661522.1 2366890 R 342610 CDS YP_661523.1 109898268 4172086 2368697..2369143 1 NC_008228.1 hypothetical protein 2369143 4172086 Patl_1951 Pseudoalteromonas atlantica T6c hypothetical protein YP_661523.1 2368697 D 342610 CDS YP_661524.1 109898269 4172087 2369226..2369747 1 NC_008228.1 hypothetical protein 2369747 4172087 Patl_1952 Pseudoalteromonas atlantica T6c hypothetical protein YP_661524.1 2369226 D 342610 CDS YP_661525.1 109898270 4172088 2370584..2371141 1 NC_008228.1 hypothetical protein 2371141 4172088 Patl_1953 Pseudoalteromonas atlantica T6c hypothetical protein YP_661525.1 2370584 D 342610 CDS YP_661526.1 109898271 4172089 complement(2371246..2371584) 1 NC_008228.1 PFAM: protein of unknown function DUF469; KEGG: vpa:VPA0178 hypothetical protein; hypothetical protein 2371584 4172089 Patl_1954 Pseudoalteromonas atlantica T6c hypothetical protein YP_661526.1 2371246 R 342610 CDS YP_661527.1 109898272 4172090 2371941..2372099 1 NC_008228.1 KEGG: cps:CPS_1538 hypothetical protein; hypothetical protein 2372099 4172090 Patl_1955 Pseudoalteromonas atlantica T6c hypothetical protein YP_661527.1 2371941 D 342610 CDS YP_661528.1 109898273 4172091 2372202..2372597 1 NC_008228.1 KEGG: vch:VCA0414 hypothetical protein; hypothetical protein 2372597 4172091 Patl_1956 Pseudoalteromonas atlantica T6c hypothetical protein YP_661528.1 2372202 D 342610 CDS YP_661529.1 109898274 4172092 complement(2372742..2374013) 1 NC_008228.1 PFAM: amine oxidase; KEGG: pha:PSHAa1280 hypothetical protein; amine oxidase 2374013 4172092 Patl_1957 Pseudoalteromonas atlantica T6c amine oxidase YP_661529.1 2372742 R 342610 CDS YP_661530.1 109898275 4172093 2374217..2374837 1 NC_008228.1 KEGG: cps:CPS_1639 hypothetical protein; hypothetical protein 2374837 4172093 Patl_1958 Pseudoalteromonas atlantica T6c hypothetical protein YP_661530.1 2374217 D 342610 CDS YP_661531.1 109898276 4172094 complement(2375086..2375868) 1 NC_008228.1 hypothetical protein 2375868 4172094 Patl_1959 Pseudoalteromonas atlantica T6c hypothetical protein YP_661531.1 2375086 R 342610 CDS YP_661532.1 109898277 4172095 complement(2376031..2376801) 1 NC_008228.1 PFAM: regulatory proteins, IclR; KEGG: bps:BPSS2127 IclR transcriptional regulator protein; IclR family transcriptional regulator 2376801 4172095 Patl_1960 Pseudoalteromonas atlantica T6c IclR family transcriptional regulator YP_661532.1 2376031 R 342610 CDS YP_661533.1 109898278 4172096 2377004..2377786 1 NC_008228.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: rba:RB7491 probable L-proline 4-hydroxylase; phytanoyl-CoA dioxygenase 2377786 4172096 Patl_1961 Pseudoalteromonas atlantica T6c phytanoyl-CoA dioxygenase YP_661533.1 2377004 D 342610 CDS YP_661534.1 109898279 4172097 2377787..2378914 1 NC_008228.1 KEGG: rba:RB9882 similar to peptidylglycine monooxygenase; peptidylglycine monooxygenase-like protein 2378914 4172097 Patl_1962 Pseudoalteromonas atlantica T6c peptidylglycine monooxygenase-like protein YP_661534.1 2377787 D 342610 CDS YP_661535.1 109898280 4172098 complement(2379175..2379912) 1 NC_008228.1 PFAM: SapC; KEGG: cps:CPS_0240 hypothetical protein; protein SapC protein 2379912 4172098 Patl_1963 Pseudoalteromonas atlantica T6c protein SapC protein YP_661535.1 2379175 R 342610 CDS YP_661536.1 109898281 4172099 complement(2379965..2381560) 1 NC_008228.1 PFAM: tryptophan halogenase; KEGG: cps:CPS_0239 putative tryptophan halogenase; tryptophan halogenase 2381560 4172099 Patl_1964 Pseudoalteromonas atlantica T6c tryptophan halogenase YP_661536.1 2379965 R 342610 CDS YP_661537.1 109898282 4172100 complement(2381708..2383843) 1 NC_008228.1 KEGG: vpa:VPA0953 putative biofilm-associated surface protein; hypothetical protein 2383843 4172100 Patl_1965 Pseudoalteromonas atlantica T6c hypothetical protein YP_661537.1 2381708 R 342610 CDS YP_661538.1 109898283 4172101 complement(2383917..2387639) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: xac:XAC0144 TonB-dependent receptor; TonB-dependent receptor 2387639 4172101 Patl_1966 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_661538.1 2383917 R 342610 CDS YP_661539.1 109898284 4172102 complement(2388517..2388786) 1 NC_008228.1 KEGG: bte:BTH_II1368 hypothetical protein; hypothetical protein 2388786 4172102 Patl_1967 Pseudoalteromonas atlantica T6c hypothetical protein YP_661539.1 2388517 R 342610 CDS YP_661540.1 109898285 4172103 complement(2388901..2389986) 1 NC_008228.1 PFAM: Glycosyl hydrolases family 32, N terminal; KEGG: sco:SCO3481 hypothetical protein; hypothetical protein 2389986 4172103 Patl_1968 Pseudoalteromonas atlantica T6c hypothetical protein YP_661540.1 2388901 R 342610 CDS YP_661541.1 109898286 4172104 complement(2390025..2390981) 1 NC_008228.1 PFAM: PfkB; KEGG: pha:PSHAa1745 ketodeoxygluconokinase; PfkB protein 2390981 4172104 Patl_1969 Pseudoalteromonas atlantica T6c PfkB protein YP_661541.1 2390025 R 342610 CDS YP_661542.1 109898287 4172105 complement(2390983..2392572) 1 NC_008228.1 TIGRFAM: sugar transporter; PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: bth:BT0436 arabinose-proton symporter; sugar transporter 2392572 4172105 Patl_1970 Pseudoalteromonas atlantica T6c sugar transporter YP_661542.1 2390983 R 342610 CDS YP_661543.1 109898288 4172106 2393044..2395425 1 NC_008228.1 KEGG: sco:SCO3487 hydrolase; agarase 2395425 4172106 Patl_1971 Pseudoalteromonas atlantica T6c agarase YP_661543.1 2393044 D 342610 CDS YP_661544.1 109898289 4172107 2395790..2396323 1 NC_008228.1 PFAM: methylation; KEGG: vfi:VF0366 MshA, mannose-sensitive haemaglutinin; prepilin-type cleavage/methylation protein 2396323 4172107 Patl_1972 Pseudoalteromonas atlantica T6c prepilin-type cleavage/methylation protein YP_661544.1 2395790 D 342610 CDS YP_661545.1 109898290 4172108 2396475..2397740 1 NC_008228.1 PFAM: protein kinase leucine-rich repeat; SMART: Serine/threonine protein kinase Leucine-rich repeat, typical subtype; KEGG: ppr:PBPRA2167 conserved hypothetical protein; serine/threonine protein kinase 2397740 4172108 Patl_1973 Pseudoalteromonas atlantica T6c serine/threonine protein kinase YP_661545.1 2396475 D 342610 CDS YP_661546.1 109898291 4172109 complement(2397767..2397937) 1 NC_008228.1 KEGG: pha:PSHAa1073 hypothetical protein; hypothetical protein 2397937 4172109 Patl_1974 Pseudoalteromonas atlantica T6c hypothetical protein YP_661546.1 2397767 R 342610 CDS YP_661547.1 109898292 4172110 2398166..2400427 1 NC_008228.1 KEGG: ilo:IL1414 catalase; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; catalase/peroxidase HPI 2400427 4172110 Patl_1975 Pseudoalteromonas atlantica T6c catalase/peroxidase HPI YP_661547.1 2398166 D 342610 CDS YP_661548.1 109898293 4172111 complement(2400552..2401337) 1 NC_008228.1 TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pha:PSHAa2944 3-hydroxybutyrate dehydrogenase; 3-hydroxybutyrate dehydrogenase 2401337 4172111 Patl_1976 Pseudoalteromonas atlantica T6c 3-hydroxybutyrate dehydrogenase YP_661548.1 2400552 R 342610 CDS YP_661549.1 109898294 4172112 complement(2401334..2402443) 1 NC_008228.1 KEGG: bte:BTH_I2303 polyhydroxybutyrate depolymerase; polyhydroxybutyrate depolymerase 2402443 4172112 Patl_1977 Pseudoalteromonas atlantica T6c polyhydroxybutyrate depolymerase YP_661549.1 2401334 R 342610 CDS YP_661550.1 109898295 4172113 complement(2402470..2403672) 1 NC_008228.1 catalyzes the formation of O-acetyl -L-homoserine from L-homoserine and acetyl-CoA; homoserine O-acetyltransferase 2403672 4172113 Patl_1978 Pseudoalteromonas atlantica T6c homoserine O-acetyltransferase YP_661550.1 2402470 R 342610 CDS YP_661551.1 109898296 4172114 complement(2403704..2404999) 1 NC_008228.1 PFAM: Gluconate transporter Citrate transporter TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pha:PSHAa2946 permease; citrate transporter 2404999 4172114 Patl_1979 Pseudoalteromonas atlantica T6c citrate transporter YP_661551.1 2403704 R 342610 CDS YP_661552.1 109898297 4172115 2405193..2407517 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2947 TonB-dependent receptor; TonB-dependent receptor 2407517 4172115 Patl_1980 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_661552.1 2405193 D 342610 CDS YP_661553.1 109898298 4172116 2407827..2408468 1 NC_008228.1 PFAM: regulatory protein, LuxR response regulator receiver Bacterio-opsin activator, HTH Sigma-70, region 4 type 2; KEGG: ilo:IL2153 response regulator, LuxR family (CheY, HTH domains); two component LuxR family transcriptional regulator 2408468 4172116 Patl_1981 Pseudoalteromonas atlantica T6c two component LuxR family transcriptional regulator YP_661553.1 2407827 D 342610 CDS YP_661554.1 109898299 4172117 complement(2408544..2410403) 1 NC_008228.1 PFAM: sodium/hydrogen exchanger; KEGG: ilo:IL1058 Na+/H+ antiporter; sodium/hydrogen exchanger 2410403 4172117 Patl_1982 Pseudoalteromonas atlantica T6c sodium/hydrogen exchanger YP_661554.1 2408544 R 342610 CDS YP_661555.1 109898300 4172118 2410879..2411313 1 NC_008228.1 KEGG: sde:Sde_3410 hypothetical protein; hypothetical protein 2411313 4172118 Patl_1983 Pseudoalteromonas atlantica T6c hypothetical protein YP_661555.1 2410879 D 342610 CDS YP_661556.1 109898301 4172119 complement(2411329..2411631) 1 NC_008228.1 KEGG: cps:CPS_2742 ISCps7, transposase; ISCps7, transposase 2411631 4172119 Patl_1984 Pseudoalteromonas atlantica T6c ISCps7, transposase YP_661556.1 2411329 R 342610 CDS YP_661557.1 109898302 4172120 complement(2412004..2415420) 1 NC_008228.1 PFAM: Na+/solute symporter response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; SMART: PAS; KEGG: ilo:IL2152 multidomain protein, contains Na+/proline symporter PutP-like domain, sensory histidine kinase and receiver domain; multi-sensor hybrid histidine kinase 2415420 4172120 Patl_1985 Pseudoalteromonas atlantica T6c multi-sensor hybrid histidine kinase YP_661557.1 2412004 R 342610 CDS YP_661558.1 109898303 4172121 2415612..2416226 1 NC_008228.1 PFAM: GrpE protein; KEGG: vpa:VP0651 GrpE; GrpE protein HSP-70 cofactor 2416226 4172121 Patl_1986 Pseudoalteromonas atlantica T6c GrpE protein HSP-70 cofactor YP_661558.1 2415612 D 342610 CDS YP_661559.1 109898304 4172122 2416360..2418279 1 NC_008228.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 2418279 dnaK 4172122 dnaK Pseudoalteromonas atlantica T6c molecular chaperone DnaK YP_661559.1 2416360 D 342610 CDS YP_661560.1 109898305 4172123 2418479..2419618 1 NC_008228.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 2419618 4172123 Patl_1988 Pseudoalteromonas atlantica T6c chaperone protein DnaJ YP_661560.1 2418479 D 342610 CDS YP_661561.1 109898306 4172124 2419975..2420442 1 NC_008228.1 PFAM: cytochrome c, class II; KEGG: cps:CPS_2799 cytochrome c'; cytochrome c, class II 2420442 4172124 Patl_1989 Pseudoalteromonas atlantica T6c cytochrome c, class II YP_661561.1 2419975 D 342610 CDS YP_661562.1 109898307 4172125 2420721..2421185 1 NC_008228.1 KEGG: pha:PSHAa1681 hypothetical protein; putative GAF sensor protein 2421185 4172125 Patl_1990 Pseudoalteromonas atlantica T6c putative GAF sensor protein YP_661562.1 2420721 D 342610 CDS YP_661563.1 109898308 4172126 2421182..2421469 1 NC_008228.1 KEGG: cps:CPS_2812 hypothetical protein; hypothetical protein 2421469 4172126 Patl_1991 Pseudoalteromonas atlantica T6c hypothetical protein YP_661563.1 2421182 D 342610 CDS YP_661564.1 109898309 4172127 2421492..2422142 1 NC_008228.1 affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector 2422142 4172127 Patl_1992 Pseudoalteromonas atlantica T6c putative solute/DNA competence effector YP_661564.1 2421492 D 342610 CDS YP_661565.1 109898310 4172128 2422147..2424186 1 NC_008228.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 2424186 4172128 Patl_1993 Pseudoalteromonas atlantica T6c carboxy-terminal protease YP_661565.1 2422147 D 342610 CDS YP_661566.1 109898311 4172129 2424388..2425734 1 NC_008228.1 PFAM: sodium:neurotransmitter symporter; KEGG: pha:PSHAa0859 sodium-dependent transporter; sodium:neurotransmitter symporter 2425734 4172129 Patl_1994 Pseudoalteromonas atlantica T6c sodium:neurotransmitter symporter YP_661566.1 2424388 D 342610 CDS YP_661567.1 109898312 4172130 2425734..2427254 1 NC_008228.1 PFAM: Na+/H+ antiporter NhaC; KEGG: pha:PSHAa1677 Na+/H+ antiporter NnaC; Na+/H+ antiporter NhaC 2427254 4172130 Patl_1995 Pseudoalteromonas atlantica T6c Na+/H+ antiporter NhaC YP_661567.1 2425734 D 342610 CDS YP_661568.1 109898313 4172131 2427354..2429978 1 NC_008228.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: eca:ECA2539 aminopeptidase N; aminopeptidase N 2429978 pepN 4172131 pepN Pseudoalteromonas atlantica T6c aminopeptidase N YP_661568.1 2427354 D 342610 CDS YP_661569.1 109898314 4172132 2429978..2430199 1 NC_008228.1 KEGG: pae:PA3051 hypothetical protein; hypothetical protein 2430199 4172132 Patl_1997 Pseudoalteromonas atlantica T6c hypothetical protein YP_661569.1 2429978 D 342610 CDS YP_661570.1 109898315 4173872 2430380..2432446 1 NC_008228.1 PFAM: protein of unknown function DUF1302; KEGG: pha:PSHAa1674 hypothetical protein; hypothetical protein 2432446 4173872 Patl_1998 Pseudoalteromonas atlantica T6c hypothetical protein YP_661570.1 2430380 D 342610 CDS YP_661571.1 109898316 4173873 2432457..2433824 1 NC_008228.1 PFAM: protein of unknown function DUF1329; KEGG: pha:PSHAa1673 hypothetical protein; hypothetical protein 2433824 4173873 Patl_1999 Pseudoalteromonas atlantica T6c hypothetical protein YP_661571.1 2432457 D 342610 CDS YP_661572.1 109898317 4173874 2433883..2434881 1 NC_008228.1 KEGG: cps:CPS_2804 BNR repeat protein; BNR repeat-containing protein 2434881 4173874 Patl_2000 Pseudoalteromonas atlantica T6c BNR repeat-containing protein YP_661572.1 2433883 D 342610 CDS YP_661573.1 109898318 4173875 2434888..2437203 1 NC_008228.1 KEGG: cps:CPS_2803 putative membrane protein; hypothetical protein 2437203 4173875 Patl_2001 Pseudoalteromonas atlantica T6c hypothetical protein YP_661573.1 2434888 D 342610 CDS YP_661574.1 109898319 4173876 2437488..2442326 1 NC_008228.1 PFAM: NAD-glutamate dehydrogenase; KEGG: pha:PSHAa1670 glutamate dehydrogenase; NAD-glutamate dehydrogenase 2442326 4173876 Patl_2002 Pseudoalteromonas atlantica T6c NAD-glutamate dehydrogenase YP_661574.1 2437488 D 342610 CDS YP_661575.1 109898320 4173877 2442397..2443404 1 NC_008228.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2443404 4173877 Patl_2003 Pseudoalteromonas atlantica T6c dihydroorotate dehydrogenase 2 YP_661575.1 2442397 D 342610 CDS YP_661576.1 109898321 4173878 2443520..2444056 1 NC_008228.1 PFAM: protein of unknown function DUF1379; KEGG: ppr:PBPRA1768 conserved hypothetical protein; hypothetical protein 2444056 4173878 Patl_2004 Pseudoalteromonas atlantica T6c hypothetical protein YP_661576.1 2443520 D 342610 CDS YP_661577.1 109898322 4173879 2444192..2446297 1 NC_008228.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 2446297 rlmL 4173879 rlmL Pseudoalteromonas atlantica T6c 23S rRNA m(2)G2445 methyltransferase YP_661577.1 2444192 D 342610 CDS YP_661578.1 109898323 4173880 2446484..2448427 1 NC_008228.1 PFAM: SMC protein-like ABC transporter related; SMART: ATPase; KEGG: ppr:PBPRA1771 putative ABC transporter, ATP-binding protein; ABC transporter-like protein 2448427 4173880 Patl_2006 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_661578.1 2446484 D 342610 CDS YP_661579.1 109898324 4173881 2448458..2450155 1 NC_008228.1 KEGG: pha:PSHAa1664 hypothetical protein; hypothetical protein 2450155 4173881 Patl_2007 Pseudoalteromonas atlantica T6c hypothetical protein YP_661579.1 2448458 D 342610 CDS YP_661580.1 109898325 4173882 2450420..2450593 1 NC_008228.1 PFAM: ribosome modulation factor; KEGG: cps:CPS_4822 ribosome modulation factor; ribosome modulation factor 2450593 4173882 Patl_2008 Pseudoalteromonas atlantica T6c ribosome modulation factor YP_661580.1 2450420 D 342610 CDS YP_661581.1 109898326 4173883 complement(2450700..2451218) 1 NC_008228.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 2451218 4173883 Patl_2009 Pseudoalteromonas atlantica T6c 3-hydroxydecanoyl-ACP dehydratase YP_661581.1 2450700 R 342610 CDS YP_661582.1 109898327 4173884 2451353..2451622 1 NC_008228.1 KEGG: cps:CPS_3273 hypothetical protein; hypothetical protein 2451622 4173884 Patl_2010 Pseudoalteromonas atlantica T6c hypothetical protein YP_661582.1 2451353 D 342610 CDS YP_661583.1 109898328 4173885 complement(2451920..2452396) 1 NC_008228.1 PFAM: SEC-C motif; KEGG: mca:MCA2786 sec-C motif domain protein; SecC motif-containing protein 2452396 4173885 Patl_2011 Pseudoalteromonas atlantica T6c SecC motif-containing protein YP_661583.1 2451920 R 342610 CDS YP_661584.1 109898329 4173886 complement(2452605..2452988) 1 NC_008228.1 hypothetical protein 2452988 4173886 Patl_2012 Pseudoalteromonas atlantica T6c hypothetical protein YP_661584.1 2452605 R 342610 CDS YP_661585.1 109898330 4173887 complement(2453056..2453703) 1 NC_008228.1 PFAM: Ferric reductase-like transmembrane component-like; KEGG: cps:CPS_3632 hypothetical protein; ferric reductase-like transmembrane protein 2453703 4173887 Patl_2013 Pseudoalteromonas atlantica T6c ferric reductase-like transmembrane protein YP_661585.1 2453056 R 342610 CDS YP_661586.1 109898331 4173888 complement(2453703..2454701) 1 NC_008228.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 2454701 4173888 Patl_2014 Pseudoalteromonas atlantica T6c putative sulfite oxidase subunit YedY YP_661586.1 2453703 R 342610 CDS YP_661587.1 109898332 4173889 complement(2454789..2456192) 1 NC_008228.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 2456192 4173889 Patl_2015 Pseudoalteromonas atlantica T6c deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_661587.1 2454789 R 342610 CDS YP_661588.1 109898333 4173890 complement(2456213..2457040) 1 NC_008228.1 KEGG: xac:XAC3992 hypothetical protein; hypothetical protein 2457040 4173890 Patl_2016 Pseudoalteromonas atlantica T6c hypothetical protein YP_661588.1 2456213 R 342610 CDS YP_661589.1 109898334 4173891 complement(2457170..2457604) 1 NC_008228.1 KEGG: eca:ECA3034 putative phosphohydrolase; putative phosphohydrolase 2457604 4173891 Patl_2017 Pseudoalteromonas atlantica T6c putative phosphohydrolase YP_661589.1 2457170 R 342610 CDS YP_661590.1 109898335 4173892 complement(2457836..2458087) 1 NC_008228.1 PFAM: helix-turn-helix motif; KEGG: pha:PSHAa2249 DNA binding protein; XRE family transcriptional regulator 2458087 4173892 Patl_2018 Pseudoalteromonas atlantica T6c XRE family transcriptional regulator YP_661590.1 2457836 R 342610 CDS YP_661591.1 109898336 4173893 complement(2458967..2459800) 1 NC_008228.1 SMART: Metal-dependent phosphohydrolase, HD region; KEGG: bur:Bcep18194_C6634 metal-dependent phosphohydrolase; metal dependent phosphohydrolase 2459800 4173893 Patl_2019 Pseudoalteromonas atlantica T6c metal dependent phosphohydrolase YP_661591.1 2458967 R 342610 CDS YP_661592.1 109898337 4173894 complement(2460187..2461440) 1 NC_008228.1 KEGG: ppu:PP1960 hypothetical protein; hypothetical protein 2461440 4173894 Patl_2020 Pseudoalteromonas atlantica T6c hypothetical protein YP_661592.1 2460187 R 342610 CDS YP_661593.1 109898338 4173895 complement(2461443..2462561) 1 NC_008228.1 KEGG: dre:558622 similar to restin; hypothetical protein 2462561 4173895 Patl_2021 Pseudoalteromonas atlantica T6c hypothetical protein YP_661593.1 2461443 R 342610 CDS YP_661594.1 109898339 4173896 complement(2462554..2464506) 1 NC_008228.1 PFAM: phage integrase; KEGG: ppu:PP1962 site-specific recombinase, phage integrase family; phage integrase 2464506 4173896 Patl_2022 Pseudoalteromonas atlantica T6c phage integrase YP_661594.1 2462554 R 342610 CDS YP_661595.1 109898340 4173897 complement(2464506..2466335) 1 NC_008228.1 KEGG: vvu:VV13176 hypothetical protein; hypothetical protein 2466335 4173897 Patl_2023 Pseudoalteromonas atlantica T6c hypothetical protein YP_661595.1 2464506 R 342610 CDS YP_661596.1 109898341 4173898 complement(2467200..2467589) 1 NC_008228.1 PFAM: regulatory protein, MerR; KEGG: sde:Sde_1961 putative transcriptional regulator, MerR family; MerR family transcriptional regulator 2467589 4173898 Patl_2024 Pseudoalteromonas atlantica T6c MerR family transcriptional regulator YP_661596.1 2467200 R 342610 CDS YP_661597.1 109898342 4173899 2467671..2468306 1 NC_008228.1 PFAM: cation efflux protein; KEGG: tcx:Tcr_1855 cation efflux protein; cation efflux protein 2468306 4173899 Patl_2025 Pseudoalteromonas atlantica T6c cation efflux protein YP_661597.1 2467671 D 342610 CDS YP_661598.1 109898343 4173900 2468303..2468662 1 NC_008228.1 KEGG: hch:HCH_03108 hypothetical protein; hypothetical protein 2468662 4173900 Patl_2026 Pseudoalteromonas atlantica T6c hypothetical protein YP_661598.1 2468303 D 342610 CDS YP_661599.1 109898344 4173901 2468655..2469539 1 NC_008228.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ilo:IL2587 cation efflux system component; cation diffusion facilitator family transporter 2469539 4173901 Patl_2027 Pseudoalteromonas atlantica T6c cation diffusion facilitator family transporter YP_661599.1 2468655 D 342610 CDS YP_661600.1 109898345 4173902 2469627..2470022 1 NC_008228.1 KEGG: cps:CPS_2870 hypothetical protein; hypothetical protein 2470022 4173902 Patl_2028 Pseudoalteromonas atlantica T6c hypothetical protein YP_661600.1 2469627 D 342610 CDS YP_661601.1 109898346 4173903 2470148..2471416 1 NC_008228.1 PFAM: outer membrane efflux protein; KEGG: cps:CPS_1957 putative RND efflux system protein; outer membrane efflux protein 2471416 4173903 Patl_2029 Pseudoalteromonas atlantica T6c outer membrane efflux protein YP_661601.1 2470148 D 342610 CDS YP_661602.1 109898347 4173904 2471413..2472351 1 NC_008228.1 PFAM: biotin/lipoyl attachment; KEGG: cps:CPS_1958 putative RND efflux system protein, MFP subunit; biotin/lipoyl attachment 2472351 4173904 Patl_2030 Pseudoalteromonas atlantica T6c biotin/lipoyl attachment YP_661602.1 2471413 D 342610 CDS YP_661603.1 109898348 4173905 2472405..2475518 1 NC_008228.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: cps:CPS_1959 putative RND efflux system protein; CzcA family heavy metal efflux protein 2475518 4173905 Patl_2031 Pseudoalteromonas atlantica T6c CzcA family heavy metal efflux protein YP_661603.1 2472405 D 342610 CDS YP_661604.1 109898349 4173906 complement(2476051..2476644) 1 NC_008228.1 KEGG: cps:CPS_3233 conserved hypothetical protein; hypothetical protein 2476644 4173906 Patl_2032 Pseudoalteromonas atlantica T6c hypothetical protein YP_661604.1 2476051 R 342610 CDS YP_661605.1 109898350 4173907 complement(2476647..2476973) 1 NC_008228.1 KEGG: sdy:SDY_2487 putative alpha helix protein; putative alpha helix protein 2476973 4173907 Patl_2033 Pseudoalteromonas atlantica T6c putative alpha helix protein YP_661605.1 2476647 R 342610 CDS YP_661606.1 109898351 4173908 complement(2476970..2478199) 1 NC_008228.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 2478199 4173908 Patl_2034 Pseudoalteromonas atlantica T6c aminotransferase AlaT YP_661606.1 2476970 R 342610 CDS YP_661607.1 109898352 4173909 2478525..2479319 1 NC_008228.1 KEGG: vvy:VV2864 putative cytochrome c oxidase, subunit I; putative cytochrome c oxidase subunit I 2479319 4173909 Patl_2035 Pseudoalteromonas atlantica T6c putative cytochrome c oxidase subunit I YP_661607.1 2478525 D 342610 CDS YP_661608.1 109898353 4173910 2479780..2480976 1 NC_008228.1 PFAM: dehydrogenase, E1 component; KEGG: ilo:IL1680 alpha keto acid dehydrogenase complex, E1 component, alpha subunit; 3-methyl-2-oxobutanoate dehydrogenase 2480976 4173910 Patl_2036 Pseudoalteromonas atlantica T6c 3-methyl-2-oxobutanoate dehydrogenase YP_661608.1 2479780 D 342610 CDS YP_661609.1 109898354 4173911 2480969..2481946 1 NC_008228.1 PFAM: Transketolase, central region Transketolase-like; KEGG: cps:CPS_1583 2-oxoisovalerate dehydrogenase complex, E1 component, beta subunit; transketolase, central region 2481946 4173911 Patl_2037 Pseudoalteromonas atlantica T6c transketolase, central region YP_661609.1 2480969 D 342610 CDS YP_661610.1 109898355 4173912 2481970..2483637 1 NC_008228.1 PFAM: biotin/lipoyl attachment catalytic domain of components of various dehydrogenase complexes E3 binding; KEGG: pha:PSHAa1630 lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (Dihydrolipoyllysine-residue(2-methylpropanoyl)transferase E2) (dihydrolipoamide branched chain transacylase) (BCKAD E2 subunit); dihydrolipoamide acetyltransferase 2483637 4173912 Patl_2038 Pseudoalteromonas atlantica T6c dihydrolipoamide acetyltransferase YP_661610.1 2481970 D 342610 CDS YP_661611.1 109898356 4173913 2483805..2484686 1 NC_008228.1 PFAM: protein of unknown function DUF519; KEGG: vvy:VV0066 hypothetical protein; hypothetical protein 2484686 4173913 Patl_2039 Pseudoalteromonas atlantica T6c hypothetical protein YP_661611.1 2483805 D 342610 CDS YP_661612.1 109898357 4173914 2484711..2486561 1 NC_008228.1 PFAM: protein kinase; SMART: Serine/threonine protein kinase; KEGG: hch:HCH_03684 serine/threonine protein kinase; serine/threonine protein kinase 2486561 4173914 Patl_2040 Pseudoalteromonas atlantica T6c serine/threonine protein kinase YP_661612.1 2484711 D 342610 CDS YP_661613.1 109898358 4173915 2486604..2487458 1 NC_008228.1 PFAM: acyl-CoA thioesterase; KEGG: pha:PSHAa0141 acyl-CoA thioesterase II; palmitoyl-CoA hydrolase 2487458 4173915 Patl_2041 Pseudoalteromonas atlantica T6c palmitoyl-CoA hydrolase YP_661613.1 2486604 D 342610 CDS YP_661614.1 109898359 4173916 2487473..2488000 1 NC_008228.1 KEGG: psb:Psyr_1274 transferase hexapeptide repeat; hexapaptide repeat-containing transferase 2488000 4173916 Patl_2042 Pseudoalteromonas atlantica T6c hexapaptide repeat-containing transferase YP_661614.1 2487473 D 342610 CDS YP_661615.1 109898360 4173917 2488370..2489497 1 NC_008228.1 PFAM: aminotransferase, class V; KEGG: son:SO4343 aminotransferase, class V; serine--pyruvate transaminase 2489497 4173917 Patl_2043 Pseudoalteromonas atlantica T6c serine--pyruvate transaminase YP_661615.1 2488370 D 342610 CDS YP_661616.1 109898361 4173918 complement(2489583..2490419) 1 NC_008228.1 hypothetical protein 2490419 4173918 Patl_2044 Pseudoalteromonas atlantica T6c hypothetical protein YP_661616.1 2489583 R 342610 CDS YP_661617.1 109898362 4173919 2490785..2491207 1 NC_008228.1 PFAM: regulatory protein, MarR; KEGG: bfs:BF3633 putative MarR-family regulatory protein; MarR family transcriptional regulator 2491207 4173919 Patl_2045 Pseudoalteromonas atlantica T6c MarR family transcriptional regulator YP_661617.1 2490785 D 342610 CDS YP_661618.1 109898363 4173920 2491280..2492755 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: pha:PSHAa2778 anion transport protein (ABC superfamily, ATP-binding protein); ABC transporter-like protein 2492755 4173920 Patl_2046 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_661618.1 2491280 D 342610 CDS YP_661619.1 109898364 4173921 2492934..2493488 1 NC_008228.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xac:XAC1227 hypothetical protein; N-acetyltransferase GCN5 2493488 4173921 Patl_2047 Pseudoalteromonas atlantica T6c N-acetyltransferase GCN5 YP_661619.1 2492934 D 342610 CDS YP_661620.1 109898365 4173922 2493650..2494570 1 NC_008228.1 catalyzes the formation of glutamate from glutamine; glutaminase 2494570 4173922 Patl_2048 Pseudoalteromonas atlantica T6c glutaminase YP_661620.1 2493650 D 342610 CDS YP_661621.1 109898366 4173923 2494675..2495292 1 NC_008228.1 KEGG: pfl:PFL_4807 hypothetical protein; hypothetical protein 2495292 4173923 Patl_2049 Pseudoalteromonas atlantica T6c hypothetical protein YP_661621.1 2494675 D 342610 CDS YP_661622.1 109898367 4173924 2495329..2495640 1 NC_008228.1 KEGG: DSBH domain containing protein; DSBH domain-containing protein 2495640 4173924 Patl_2050 Pseudoalteromonas atlantica T6c DSBH domain-containing protein YP_661622.1 2495329 D 342610 CDS YP_661623.1 109898368 4173925 complement(2495696..2496922) 1 NC_008228.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 2496922 4173925 Patl_2051 Pseudoalteromonas atlantica T6c allantoate amidohydrolase YP_661623.1 2495696 R 342610 CDS YP_661624.1 109898369 4173926 complement(2496922..2498142) 1 NC_008228.1 PFAM: aminotransferase, class V; KEGG: eca:ECA3491 purine catabolism protein; class V aminotransferase 2498142 4173926 Patl_2052 Pseudoalteromonas atlantica T6c class V aminotransferase YP_661624.1 2496922 R 342610 CDS YP_661625.1 109898370 4173927 complement(2498206..2499030) 1 NC_008228.1 PFAM: protein of unknown function DUF81; KEGG: pha:PSHAa1469 hypothetical protein; hypothetical protein 2499030 4173927 Patl_2053 Pseudoalteromonas atlantica T6c hypothetical protein YP_661625.1 2498206 R 342610 CDS YP_661626.1 109898371 4173928 complement(2499089..2500675) 1 NC_008228.1 PFAM: gamma-glutamyltranspeptidase; KEGG: vch:VCA0558 gamma-glutamyltranspeptidase, putative; gamma-glutamyltransferase 2500675 4173928 Patl_2054 Pseudoalteromonas atlantica T6c gamma-glutamyltransferase YP_661626.1 2499089 R 342610 CDS YP_661627.1 109898372 4173929 complement(2500678..2501895) 1 NC_008228.1 PFAM: Amidase; KEGG: rpb:RPB_2085 amidase; amidase 2501895 4173929 Patl_2055 Pseudoalteromonas atlantica T6c amidase YP_661627.1 2500678 R 342610 CDS YP_661628.1 109898373 4173735 complement(2502246..2503655) 1 NC_008228.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 2503655 fumC 4173735 fumC Pseudoalteromonas atlantica T6c fumarate hydratase YP_661628.1 2502246 R 342610 CDS YP_661629.1 109898374 4173736 complement(2503799..2504617) 1 NC_008228.1 PFAM: helix-turn-helix protein RpiR sugar isomerase (SIS); KEGG: eca:ECA3496 putative transcriptional regulator; RpiR family transcriptional regulator 2504617 4173736 Patl_2057 Pseudoalteromonas atlantica T6c RpiR family transcriptional regulator YP_661629.1 2503799 R 342610 CDS YP_661630.1 109898375 4173737 2504938..2505666 1 NC_008228.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 2505666 4173737 Patl_2058 Pseudoalteromonas atlantica T6c NAD-dependent deacetylase YP_661630.1 2504938 D 342610 CDS YP_661631.1 109898376 4173738 2505657..2506292 1 NC_008228.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: psb:Psyr_0989 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 2506292 4173738 Patl_2059 Pseudoalteromonas atlantica T6c lysine exporter protein LysE/YggA YP_661631.1 2505657 D 342610 CDS YP_661632.1 109898377 4173739 2506396..2507139 1 NC_008228.1 KEGG: vvu:VV12605 hypothetical protein; hypothetical protein 2507139 4173739 Patl_2060 Pseudoalteromonas atlantica T6c hypothetical protein YP_661632.1 2506396 D 342610 CDS YP_661633.1 109898378 4173740 2507132..2507992 1 NC_008228.1 PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; KEGG: son:SO2352 bax protein, putative; mannosyl-glycoprotein endo-beta-N-acetylglucosamidase 2507992 4173740 Patl_2061 Pseudoalteromonas atlantica T6c mannosyl-glycoprotein endo-beta-N-acetylglucosamidase YP_661633.1 2507132 D 342610 CDS YP_661634.1 109898379 4173741 2507989..2508660 1 NC_008228.1 KEGG: son:SO2353 hypothetical protein; hypothetical protein 2508660 4173741 Patl_2062 Pseudoalteromonas atlantica T6c hypothetical protein YP_661634.1 2507989 D 342610 CDS YP_661635.1 109898380 4173742 complement(2508880..2509863) 1 NC_008228.1 PFAM: Patatin; KEGG: ilo:IL0740 alpha-beta superfamily hydrolase; patatin 2509863 4173742 Patl_2063 Pseudoalteromonas atlantica T6c patatin YP_661635.1 2508880 R 342610 CDS YP_661636.1 109898381 4173743 complement(2509874..2510830) 1 NC_008228.1 PFAM: PP-loop; KEGG: vch:VC1432 hypothetical protein; PP-loop superfamily ATPase 2510830 4173743 Patl_2064 Pseudoalteromonas atlantica T6c PP-loop superfamily ATPase YP_661636.1 2509874 R 342610 CDS YP_661637.1 109898382 4173744 complement(2511184..2512119) 1 NC_008228.1 with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 2512119 4173744 Patl_2065 Pseudoalteromonas atlantica T6c universal stress protein UspE YP_661637.1 2511184 R 342610 CDS YP_661638.1 109898383 4173745 complement(2512282..2512944) 1 NC_008228.1 KEGG: vfi:VF1307 integral membrane protein; integral membrane protein 2512944 4173745 Patl_2066 Pseudoalteromonas atlantica T6c integral membrane protein YP_661638.1 2512282 R 342610 CDS YP_661639.1 109898384 4173746 complement(2512931..2513179) 1 NC_008228.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: cps:CPS_1989 cytochrome oxidase maturation protein, cbb3-type; cbb3-type cytochrome oxidase maturation protein 2513179 4173746 Patl_2067 Pseudoalteromonas atlantica T6c cbb3-type cytochrome oxidase maturation protein YP_661639.1 2512931 R 342610 CDS YP_661640.1 109898385 4173747 complement(2513197..2515572) 1 NC_008228.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC copper-translocating P-type ATPase heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase-like hydrolase Heavy metal transport/detoxification protein E1-E2 ATPase-associated region; KEGG: vch:VC1437 cation transport ATPase, E1-E2 family; heavy metal translocating P-type ATPase 2515572 4173747 Patl_2068 Pseudoalteromonas atlantica T6c heavy metal translocating P-type ATPase YP_661640.1 2513197 R 342610 CDS YP_661641.1 109898386 4173748 complement(2515572..2516081) 1 NC_008228.1 KEGG: son:SO2360 hypothetical protein; hypothetical protein 2516081 4173748 Patl_2069 Pseudoalteromonas atlantica T6c hypothetical protein YP_661641.1 2515572 R 342610 CDS YP_661642.1 109898387 4173749 complement(2516153..2517106) 1 NC_008228.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: ilo:IL1300 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III 2517106 4173749 Patl_2070 Pseudoalteromonas atlantica T6c cytochrome c oxidase, cbb3-type subunit III YP_661642.1 2516153 R 342610 CDS YP_661643.1 109898388 4173750 complement(2517099..2517272) 1 NC_008228.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: vvy:VV1673 Cbb3-type cytochrome oxidase, subunit 3; cbb3-type cytochrome oxidase subunit 2517272 4173750 Patl_2071 Pseudoalteromonas atlantica T6c cbb3-type cytochrome oxidase subunit YP_661643.1 2517099 R 342610 CDS YP_661644.1 109898389 4173751 complement(2517274..2517879) 1 NC_008228.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 2517879 4173751 Patl_2072 Pseudoalteromonas atlantica T6c cbb3-type cytochrome c oxidase subunit II YP_661644.1 2517274 R 342610 CDS YP_661645.1 109898390 4173752 complement(2517891..2519330) 1 NC_008228.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 2519330 4173752 Patl_2073 Pseudoalteromonas atlantica T6c cbb3-type cytochrome c oxidase subunit I YP_661645.1 2517891 R 342610 CDS YP_661646.1 109898391 4173753 2519579..2520031 1 NC_008228.1 hypothetical protein 2520031 4173753 Patl_2074 Pseudoalteromonas atlantica T6c hypothetical protein YP_661646.1 2519579 D 342610 CDS YP_661647.1 109898392 4173754 complement(2520199..2520666) 1 NC_008228.1 TIGRFAM: bacterioferritin; PFAM: Ferritin and Dps; KEGG: son:SO1112 bacterioferritin subunit 1; bacterioferritin 2520666 4173754 Patl_2075 Pseudoalteromonas atlantica T6c bacterioferritin YP_661647.1 2520199 R 342610 CDS YP_661648.1 109898393 4173755 complement(2520666..2521145) 1 NC_008228.1 TIGRFAM: bacterioferritin; PFAM: Ferritin and Dps; KEGG: son:SO1111 bacterioferritin subunit 2; bacterioferritin 2521145 4173755 Patl_2076 Pseudoalteromonas atlantica T6c bacterioferritin YP_661648.1 2520666 R 342610 CDS YP_661649.1 109898394 4173756 2521619..2521852 1 NC_008228.1 hypothetical protein 2521852 4173756 Patl_2077 Pseudoalteromonas atlantica T6c hypothetical protein YP_661649.1 2521619 D 342610 CDS YP_661650.1 109898395 4173757 2521849..2522679 1 NC_008228.1 PFAM: Conserved TM helix; KEGG: pfl:PFL_1874 CmpX protein; hypothetical protein 2522679 4173757 Patl_2078 Pseudoalteromonas atlantica T6c hypothetical protein YP_661650.1 2521849 D 342610 CDS YP_661651.1 109898396 4173758 2522703..2523233 1 NC_008228.1 PFAM: sigma-70 region 2 Sigma-70, region 4 type 2; KEGG: psb:Psyr_2096 sigma-70 region 2; ECF subfamily RNA polymerase sigma-24 factor 2523233 4173758 Patl_2079 Pseudoalteromonas atlantica T6c ECF subfamily RNA polymerase sigma-24 factor YP_661651.1 2522703 D 342610 CDS YP_661652.1 109898397 4173759 2523825..2524925 1 NC_008228.1 PFAM: Thrombospondin type 3 repeat OmpA/MotB OmpF; KEGG: cps:CPS_0958 OmpA family protein; OmpA/MotB protein 2524925 4173759 Patl_2080 Pseudoalteromonas atlantica T6c OmpA/MotB protein YP_661652.1 2523825 D 342610 CDS YP_661653.1 109898398 4173760 2525209..2526099 1 NC_008228.1 PFAM: phospholipase A1; KEGG: ppr:PBPRA1301 putative outer membrane phospholipase A precursor; phospholipase A1 2526099 4173760 Patl_2081 Pseudoalteromonas atlantica T6c phospholipase A1 YP_661653.1 2525209 D 342610 CDS YP_661654.1 109898399 4173761 complement(2526184..2528328) 1 NC_008228.1 PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: dar:Daro_4142 PAS; histidine kinase 2528328 4173761 Patl_2082 Pseudoalteromonas atlantica T6c histidine kinase YP_661654.1 2526184 R 342610 CDS YP_661655.1 109898400 4173762 complement(2528450..2528965) 1 NC_008228.1 hypothetical protein 2528965 4173762 Patl_2083 Pseudoalteromonas atlantica T6c hypothetical protein YP_661655.1 2528450 R 342610 CDS YP_661656.1 109898401 4173763 2529319..2530638 1 NC_008228.1 TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; KEGG: son:SO1498 glucose-1-phosphate adenylyltransferase; glucose-1-phosphate adenylyltransferase 2530638 4173763 Patl_2084 Pseudoalteromonas atlantica T6c glucose-1-phosphate adenylyltransferase YP_661656.1 2529319 D 342610 CDS YP_661657.1 109898402 4173764 2530846..2531640 1 NC_008228.1 PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: pmu:PM0668 fumarate (and nitrate) reduction regulatory protein; Crp/FNR family transcriptional regulator 2531640 4173764 Patl_2085 Pseudoalteromonas atlantica T6c Crp/FNR family transcriptional regulator YP_661657.1 2530846 D 342610 CDS YP_661658.1 109898403 4173765 2531701..2532066 1 NC_008228.1 PFAM: Rhodanese-like; KEGG: cps:CPS_1238 hypothetical protein; rhodanese-like protein 2532066 4173765 Patl_2086 Pseudoalteromonas atlantica T6c rhodanese-like protein YP_661658.1 2531701 D 342610 CDS YP_661659.1 109898404 4173766 complement(2532086..2533204) 1 NC_008228.1 PFAM: phosphofructokinase; KEGG: sru:SRU_2111 phosphofructokinase subfamily; 6-phosphofructokinase 2533204 4173766 Patl_2087 Pseudoalteromonas atlantica T6c 6-phosphofructokinase YP_661659.1 2532086 R 342610 CDS YP_661660.1 109898405 4173767 complement(2533182..2534180) 1 NC_008228.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: ana:alr0058 D-lactate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 2534180 4173767 Patl_2088 Pseudoalteromonas atlantica T6c D-isomer specific 2-hydroxyacid dehydrogenase YP_661660.1 2533182 R 342610 CDS YP_661661.1 109898406 4173768 2534536..2535456 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein response regulator receiver; KEGG: cvi:CV3504 probable two-component response regulator; diguanylate cyclase 2535456 4173768 Patl_2089 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_661661.1 2534536 D 342610 CDS YP_661662.1 109898407 4173769 2535679..2536110 1 NC_008228.1 PFAM: regulatory protein, MerR; KEGG: pha:PSHAa1010 transcriptional regulator; MerR family transcriptional regulator 2536110 4173769 Patl_2090 Pseudoalteromonas atlantica T6c MerR family transcriptional regulator YP_661662.1 2535679 D 342610 CDS YP_661663.1 109898408 4173770 2536100..2538352 1 NC_008228.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC copper-translocating P-type ATPase heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase-like hydrolase Heavy metal transport/detoxification protein E1-E2 ATPase-associated region; KEGG: pha:PSHAa1011 P-type ATPase, copper transporting, phophatase-like domain; copper-translocating P-type ATPase 2538352 4173770 Patl_2091 Pseudoalteromonas atlantica T6c copper-translocating P-type ATPase YP_661663.1 2536100 D 342610 CDS YP_661664.1 109898409 4173771 2538388..2538741 1 NC_008228.1 KEGG: pha:PSHAa1012 hypothetical protein; hypothetical protein 2538741 4173771 Patl_2092 Pseudoalteromonas atlantica T6c hypothetical protein YP_661664.1 2538388 D 342610 CDS YP_661665.1 109898410 4173772 2539333..2539578 1 NC_008228.1 hypothetical protein 2539578 4173772 Patl_2093 Pseudoalteromonas atlantica T6c hypothetical protein YP_661665.1 2539333 D 342610 CDS YP_661666.1 109898411 4173773 2539618..2540040 1 NC_008228.1 PFAM: UspA; KEGG: hch:HCH_04760 universal stress protein UspA and related nucleotide-binding protein; hypothetical protein 2540040 4173773 Patl_2094 Pseudoalteromonas atlantica T6c hypothetical protein YP_661666.1 2539618 D 342610 CDS YP_661667.1 109898412 4173774 complement(2540220..2540627) 1 NC_008228.1 PFAM: response regulator receiver; KEGG: nar:Saro_1578 two component transcriptional regulator, LuxR family; response regulator receiver protein 2540627 4173774 Patl_2095 Pseudoalteromonas atlantica T6c response regulator receiver protein YP_661667.1 2540220 R 342610 CDS YP_661668.1 109898413 4173775 complement(2540765..2541403) 1 NC_008228.1 PFAM: regulatory protein, LuxR response regulator receiver; KEGG: hch:HCH_05220 response regulator; two component LuxR family transcriptional regulator 2541403 4173775 Patl_2096 Pseudoalteromonas atlantica T6c two component LuxR family transcriptional regulator YP_661668.1 2540765 R 342610 CDS YP_661669.1 109898414 4173776 complement(2541393..2542589) 1 NC_008228.1 KEGG: mlo:mll6607 two-component, nitrogen fixation sensor protein FixL; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS; PAS/PAC sensor signal transduction histidine kinase 2542589 4173776 Patl_2097 Pseudoalteromonas atlantica T6c PAS/PAC sensor signal transduction histidine kinase YP_661669.1 2541393 R 342610 CDS YP_661670.1 109898415 4173777 2542792..2543649 1 NC_008228.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ava:Ava_1002 cation efflux protein; cation diffusion facilitator family transporter 2543649 4173777 Patl_2098 Pseudoalteromonas atlantica T6c cation diffusion facilitator family transporter YP_661670.1 2542792 D 342610 CDS YP_661671.1 109898416 4173778 complement(2543683..2543988) 1 NC_008228.1 KEGG: pha:PSHAa2877 hypothetical protein; hypothetical protein 2543988 4173778 Patl_2099 Pseudoalteromonas atlantica T6c hypothetical protein YP_661671.1 2543683 R 342610 CDS YP_661672.1 109898417 4173779 complement(2543993..2544955) 1 NC_008228.1 PFAM: heat shock protein DnaJ-like chaperone DnaJ-like; KEGG: ppu:PP4848 curved-DNA-binding protein, DnaJ family; heat shock protein DnaJ-like protein 2544955 4173779 Patl_2100 Pseudoalteromonas atlantica T6c heat shock protein DnaJ-like protein YP_661672.1 2543993 R 342610 CDS YP_661673.1 109898418 4173780 complement(2545112..2545576) 1 NC_008228.1 KEGG: cps:CPS_2621 cytochrome c family protein; cytochrome c family protein 2545576 4173780 Patl_2101 Pseudoalteromonas atlantica T6c cytochrome c family protein YP_661673.1 2545112 R 342610 CDS YP_661674.1 109898419 4173781 2545959..2546543 1 NC_008228.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pfl:PFL_2643 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2546543 4173781 Patl_2102 Pseudoalteromonas atlantica T6c N-acetyltransferase GCN5 YP_661674.1 2545959 D 342610 CDS YP_661675.1 109898420 4173782 complement(2546805..2547686) 1 NC_008228.1 KEGG: son:SO2355 universal stress protein family; hypothetical protein 2547686 4173782 Patl_2103 Pseudoalteromonas atlantica T6c hypothetical protein YP_661675.1 2546805 R 342610 CDS YP_661676.1 109898421 4173783 2548103..2551231 1 NC_008228.1 KEGG: pha:PSHAa1624 sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4 PAS fold; SMART: PAS; multi-sensor hybrid histidine kinase 2551231 4173783 Patl_2104 Pseudoalteromonas atlantica T6c multi-sensor hybrid histidine kinase YP_661676.1 2548103 D 342610 CDS YP_661677.1 109898422 4173784 complement(2551326..2551628) 1 NC_008228.1 PFAM: regulatory protein, ArsR; KEGG: mag:amb2905 predicted transcriptional regulator; ArsR family transcriptional regulator 2551628 4173784 Patl_2105 Pseudoalteromonas atlantica T6c ArsR family transcriptional regulator YP_661677.1 2551326 R 342610 CDS YP_661678.1 109898423 4173785 complement(2551634..2552107) 1 NC_008228.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: vpa:VPA0945 hypothetical protein; hypothetical protein 2552107 4173785 Patl_2106 Pseudoalteromonas atlantica T6c hypothetical protein YP_661678.1 2551634 R 342610 CDS YP_661679.1 109898424 4173786 complement(2552107..2552586) 1 NC_008228.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: ppr:PBPRA1422 conserved hypothetical protein; hypothetical protein 2552586 4173786 Patl_2107 Pseudoalteromonas atlantica T6c hypothetical protein YP_661679.1 2552107 R 342610 CDS YP_661680.1 109898425 4173787 2553550..2553825 1 NC_008228.1 KEGG: aci:ACIAD2972 hypothetical protein; hypothetical protein 2553825 4173787 Patl_2108 Pseudoalteromonas atlantica T6c hypothetical protein YP_661680.1 2553550 D 342610 CDS YP_661681.1 109898426 4173788 complement(2553834..2554649) 1 NC_008228.1 PFAM: Redoxin; KEGG: tbd:Tbd_2789 probable thiol:disulfide interchange protein; redoxin 2554649 4173788 Patl_2109 Pseudoalteromonas atlantica T6c redoxin YP_661681.1 2553834 R 342610 CDS YP_661682.1 109898427 4173789 complement(2555257..2556726) 1 NC_008228.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 2556726 4173789 Patl_2110 Pseudoalteromonas atlantica T6c 6-phosphogluconate dehydrogenase YP_661682.1 2555257 R 342610 CDS YP_661683.1 109898428 4173790 2557218..2558453 1 NC_008228.1 PFAM: phage integrase; KEGG: son:SO2370 site-specific recombinase, phage integrase family; phage integrase 2558453 4173790 Patl_2111 Pseudoalteromonas atlantica T6c phage integrase YP_661683.1 2557218 D 342610 CDS YP_661684.1 109898429 4173791 complement(2558550..2560994) 1 NC_008228.1 PFAM: Pyrrolo-quinoline quinone; KEGG: xcb:XC_2659 glucose dehydrogenase; Pyrrolo-quinoline quinone 2560994 4173791 Patl_2112 Pseudoalteromonas atlantica T6c Pyrrolo-quinoline quinone YP_661684.1 2558550 R 342610 CDS YP_661685.1 109898430 4173792 complement(2561287..2563059) 1 NC_008228.1 PFAM: glycoside hydrolase, family 13-like alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: rba:RB548 1,4-alpha-glucan branching enzyme; alpha amylase 2563059 4173792 Patl_2113 Pseudoalteromonas atlantica T6c alpha amylase YP_661685.1 2561287 R 342610 CDS YP_661686.1 109898431 4173793 2563473..2563985 1 NC_008228.1 KEGG: hch:HCH_03360 hypothetical protein; hypothetical protein 2563985 4173793 Patl_2114 Pseudoalteromonas atlantica T6c hypothetical protein YP_661686.1 2563473 D 342610 CDS YP_661687.1 109898432 4173370 complement(2564158..2564931) 1 NC_008228.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: pha:PSHAa1800 putative metallo-dependent hydrolase; TatD family hydrolase 2564931 4173370 Patl_2115 Pseudoalteromonas atlantica T6c TatD family hydrolase YP_661687.1 2564158 R 342610 CDS YP_661688.1 109898433 4173371 complement(2564994..2565896) 1 NC_008228.1 KEGG: mca:MCA1995 DNA polymerase III, delta prime subunit; DNA-directed DNA polymerase 2565896 4173371 Patl_2116 Pseudoalteromonas atlantica T6c DNA-directed DNA polymerase YP_661688.1 2564994 R 342610 CDS YP_661689.1 109898434 4173372 complement(2565898..2566527) 1 NC_008228.1 PFAM: thymidylate kinase; KEGG: vch:VC2016 dTMP kinase; thymidylate kinase 2566527 4173372 Patl_2117 Pseudoalteromonas atlantica T6c thymidylate kinase YP_661689.1 2565898 R 342610 CDS YP_661690.1 109898435 4173373 complement(2566595..2567533) 1 NC_008228.1 PFAM: aminodeoxychorismate lyase; KEGG: vch:VC2017 hypothetical protein; aminodeoxychorismate lyase 2567533 4173373 Patl_2118 Pseudoalteromonas atlantica T6c aminodeoxychorismate lyase YP_661690.1 2566595 R 342610 CDS YP_661691.1 109898436 4173374 complement(2567618..2568433) 1 NC_008228.1 PFAM: aminotransferase, class IV; KEGG: yps:YPTB2468 4-amino-4-deoxychorismate lyase; class IV aminotransferase 2568433 4173374 Patl_2119 Pseudoalteromonas atlantica T6c class IV aminotransferase YP_661691.1 2567618 R 342610 CDS YP_661692.1 109898437 4173375 complement(2568566..2569804) 1 NC_008228.1 PFAM: beta-ketoacyl synthase; KEGG: ecj:JW1081 3-oxoacyl-[acyl-carrier-protein] synthase II; beta-ketoacyl synthase 2569804 4173375 Patl_2120 Pseudoalteromonas atlantica T6c beta-ketoacyl synthase YP_661692.1 2568566 R 342610 CDS YP_661693.1 109898438 4173376 complement(2569883..2570122) 1 NC_008228.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 2570122 acpP 4173376 acpP Pseudoalteromonas atlantica T6c acyl carrier protein YP_661693.1 2569883 R 342610 CDS YP_661694.1 109898439 4173377 complement(2570306..2571043) 1 NC_008228.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR Male sterility-like; KEGG: vpa:VP2054 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 2571043 4173377 Patl_2122 Pseudoalteromonas atlantica T6c 3-oxoacyl-(acyl-carrier-protein) reductase YP_661694.1 2570306 R 342610 CDS YP_661695.1 109898440 4173378 complement(2571058..2571987) 1 NC_008228.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase region; KEGG: msu:MS1873 (acyl-carrier-protein) S-malonyltransferase; malonyl CoA-acyl carrier protein transacylase 2571987 4173378 Patl_2123 Pseudoalteromonas atlantica T6c malonyl CoA-acyl carrier protein transacylase YP_661695.1 2571058 R 342610 CDS YP_661696.1 109898441 4173379 complement(2572049..2573008) 1 NC_008228.1 KEGG: vvy:VV1273 3-oxoacyl-(acyl-carrier-protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-(acyl-carrier-protein) synthase III 2573008 4173379 Patl_2124 Pseudoalteromonas atlantica T6c 3-oxoacyl-(acyl-carrier-protein) synthase III YP_661696.1 2572049 R 342610 CDS YP_661697.1 109898442 4173380 complement(2573012..2574037) 1 NC_008228.1 TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: cps:CPS_2295 fatty acid/phospholipid synthesis protein PlsX; fatty acid/phospholipid synthesis protein PlsX 2574037 4173380 Patl_2125 Pseudoalteromonas atlantica T6c fatty acid/phospholipid synthesis protein PlsX YP_661697.1 2573012 R 342610 CDS YP_661698.1 109898443 4173381 complement(2574050..2574220) 1 NC_008228.1 TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: vpa:VP2058 ribosomal protein L32; 50S ribosomal protein L32 2574220 4173381 Patl_2126 Pseudoalteromonas atlantica T6c 50S ribosomal protein L32 YP_661698.1 2574050 R 342610 CDS YP_661699.1 109898444 4173382 complement(2574231..2574758) 1 NC_008228.1 PFAM: protein of unknown function DUF177; KEGG: sdy:SDY_2062 hypothetical protein; hypothetical protein 2574758 4173382 Patl_2127 Pseudoalteromonas atlantica T6c hypothetical protein YP_661699.1 2574231 R 342610 CDS YP_661700.1 109898445 4173383 2574882..2575466 1 NC_008228.1 TIGRFAM: maf protein; PFAM: Maf-like protein; KEGG: eca:ECA1791 Maf-like protein; maf protein 2575466 4173383 Patl_2128 Pseudoalteromonas atlantica T6c maf protein YP_661700.1 2574882 D 342610 CDS YP_661701.1 109898446 4173384 complement(2575532..2576392) 1 NC_008228.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase; KEGG: syf:Synpcc7942_2099 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 2576392 4173384 Patl_2129 Pseudoalteromonas atlantica T6c dTDP-4-dehydrorhamnose reductase YP_661701.1 2575532 R 342610 CDS YP_661702.1 109898447 4173385 complement(2576439..2576987) 1 NC_008228.1 KEGG: vvy:VV0303 dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 2576987 4173385 Patl_2130 Pseudoalteromonas atlantica T6c dTDP-4-dehydrorhamnose 3,5-epimerase YP_661702.1 2576439 R 342610 CDS YP_661703.1 109898448 4173386 complement(2577015..2577908) 1 NC_008228.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: par:Psyc_1214 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 2577908 4173386 Patl_2131 Pseudoalteromonas atlantica T6c glucose-1-phosphate thymidylyltransferase YP_661703.1 2577015 R 342610 CDS YP_661704.1 109898449 4173387 complement(2577911..2579002) 1 NC_008228.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: vpa:VP0222 dTDP-D-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 2579002 4173387 Patl_2132 Pseudoalteromonas atlantica T6c dTDP-glucose 4,6-dehydratase YP_661704.1 2577911 R 342610 CDS YP_661705.1 109898450 4173388 complement(2579054..2580010) 1 NC_008228.1 KEGG: hdu:HD0645 ribosomal large subunit pseudouridine synthase C; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 pseudouridine synthase; RluA family pseudouridine synthase 2580010 4173388 Patl_2133 Pseudoalteromonas atlantica T6c RluA family pseudouridine synthase YP_661705.1 2579054 R 342610 CDS YP_661706.1 109898451 4173389 2580531..2583743 1 NC_008228.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1; KEGG: pha:PSHAa1816 RNase E: endoribonuclease for rRNA processing and mRNA degradation; member of the degradosome; involved in the production of deoxyribonucleotides via the formation of NDPs; ribonuclease 2583743 4173389 Patl_2134 Pseudoalteromonas atlantica T6c ribonuclease YP_661706.1 2580531 D 342610 CDS YP_661707.1 109898452 4173390 2583926..2585233 1 NC_008228.1 PFAM: helicase-like DEAD/DEAH box helicase-like; KEGG: ppr:PBPRB1232 putative ATP-dependent RNA helicase RhlE; DEAD/DEAH box helicase 2585233 4173390 Patl_2135 Pseudoalteromonas atlantica T6c DEAD/DEAH box helicase YP_661707.1 2583926 D 342610 CDS YP_661708.1 109898453 4173391 2585365..2587956 1 NC_008228.1 KEGG: pha:PSHAa2329 hypothetical protein ; signal peptide; hypothetical protein 2587956 4173391 Patl_2136 Pseudoalteromonas atlantica T6c hypothetical protein YP_661708.1 2585365 D 342610 CDS YP_661709.1 109898454 4173392 2587959..2588132 1 NC_008228.1 KEGG: pha:PSHAa2328 hypothetical protein; hypothetical protein 2588132 4173392 Patl_2137 Pseudoalteromonas atlantica T6c hypothetical protein YP_661709.1 2587959 D 342610 CDS YP_661710.1 109898455 4173393 2588142..2588471 1 NC_008228.1 PFAM: Uncharacterised conserved protein UCP025560; KEGG: pha:PSHAa2327 hypothetical protein; hypothetical protein 2588471 4173393 Patl_2138 Pseudoalteromonas atlantica T6c hypothetical protein YP_661710.1 2588142 D 342610 CDS YP_661711.1 109898456 4173394 complement(2588568..2589332) 1 NC_008228.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pfo:Pfl_3419 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 2589332 4173394 Patl_2139 Pseudoalteromonas atlantica T6c short chain dehydrogenase YP_661711.1 2588568 R 342610 CDS YP_661712.1 109898457 4173395 complement(2589360..2590124) 1 NC_008228.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: hch:HCH_06815 short-chain alcohol dehydrogenase-like protein; short-chain dehydrogenase/reductase SDR 2590124 4173395 Patl_2140 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_661712.1 2589360 R 342610 CDS YP_661713.1 109898458 4173396 complement(2590282..2592132) 1 NC_008228.1 PFAM: acyl-CoA dehydrogenase-like; KEGG: psp:PSPPH_0495 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase-like protein 2592132 4173396 Patl_2141 Pseudoalteromonas atlantica T6c acyl-CoA dehydrogenase-like protein YP_661713.1 2590282 R 342610 CDS YP_661714.1 109898459 4173397 2592313..2593287 1 NC_008228.1 PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: hch:HCH_00884 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; AraC family transcriptional regulator 2593287 4173397 Patl_2142 Pseudoalteromonas atlantica T6c AraC family transcriptional regulator YP_661714.1 2592313 D 342610 CDS YP_661715.1 109898460 4173398 2593868..2594176 1 NC_008228.1 PFAM: glycoside hydrolase, family 13-like; KEGG: dde:Dde_2682 isoamylase protein-like; glycoside hydrolase 2594176 4173398 Patl_2143 Pseudoalteromonas atlantica T6c glycoside hydrolase YP_661715.1 2593868 D 342610 CDS YP_661716.1 109898461 4173399 complement(2594233..2596191) 1 NC_008228.1 PFAM: Glycoside hydrolase, family 42-like Beta-galactosidase trimerisation; KEGG: tma:TM1195 beta-galactosidase; beta-galactosidase 2596191 4173399 Patl_2144 Pseudoalteromonas atlantica T6c beta-galactosidase YP_661716.1 2594233 R 342610 CDS YP_661717.1 109898462 4173400 complement(2596540..2597466) 1 NC_008228.1 PFAM: electron transfer flavoprotein beta-subunit electron transfer flavoprotein, alpha subunit; KEGG: cps:CPS_3688 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 2597466 4173400 Patl_2145 Pseudoalteromonas atlantica T6c electron transfer flavoprotein subunit alpha YP_661717.1 2596540 R 342610 CDS YP_661718.1 109898463 4173401 complement(2597466..2598281) 1 NC_008228.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: cps:CPS_3687 electron transfer flavoprotein, beta subunit; electron transfer flavoprotein subunit beta 2598281 4173401 Patl_2146 Pseudoalteromonas atlantica T6c electron transfer flavoprotein subunit beta YP_661718.1 2597466 R 342610 CDS YP_661719.1 109898464 4173402 2598644..2600293 1 NC_008228.1 PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: cps:CPS_3686 electron transfer flavoprotein-ubiquinone oxidoreductase; electron-transferring-flavoprotein dehydrogenase 2600293 4173402 Patl_2147 Pseudoalteromonas atlantica T6c electron-transferring-flavoprotein dehydrogenase YP_661719.1 2598644 D 342610 CDS YP_661720.1 109898465 4173403 2600475..2600876 1 NC_008228.1 PFAM: histone-like nucleoid-structuring protein H-NS; KEGG: son:SO3146 DNA-binding protein, H-NS family; histone-like nucleoid-structuring protein H-NS 2600876 4173403 Patl_2148 Pseudoalteromonas atlantica T6c histone-like nucleoid-structuring protein H-NS YP_661720.1 2600475 D 342610 CDS YP_661721.1 109898466 4173404 2601063..2601746 1 NC_008228.1 PFAM: alpha/beta hydrolase fold; KEGG: pha:PSHAa1636 hydrolase; alpha/beta hydrolase fold protein 2601746 4173404 Patl_2149 Pseudoalteromonas atlantica T6c alpha/beta hydrolase fold protein YP_661721.1 2601063 D 342610 CDS YP_661722.1 109898467 4173405 2601808..2602020 1 NC_008228.1 KEGG: son:SO2332 hypothetical protein; hypothetical protein 2602020 4173405 Patl_2150 Pseudoalteromonas atlantica T6c hypothetical protein YP_661722.1 2601808 D 342610 CDS YP_661723.1 109898468 4173406 2602075..2602599 1 NC_008228.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 2602599 4173406 Patl_2151 Pseudoalteromonas atlantica T6c flavodoxin FldA YP_661723.1 2602075 D 342610 CDS YP_661724.1 109898469 4173407 2602822..2603244 1 NC_008228.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 2603244 fur 4173407 fur Pseudoalteromonas atlantica T6c ferric uptake regulator YP_661724.1 2602822 D 342610 CDS YP_661725.1 109898470 4173408 complement(2603549..2604241) 1 NC_008228.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS1804 molybdenum transport system permease; molybdate ABC transporter inner membrane subunit 2604241 4173408 Patl_2153 Pseudoalteromonas atlantica T6c molybdate ABC transporter inner membrane subunit YP_661725.1 2603549 R 342610 CDS YP_661726.1 109898471 4173409 complement(2604231..2605025) 1 NC_008228.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: rpa:RPA4717 molybdate transport system substrate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 2605025 4173409 Patl_2154 Pseudoalteromonas atlantica T6c molybdenum ABC transporter periplasmic molybdate-binding protein YP_661726.1 2604231 R 342610 CDS YP_661727.1 109898472 4173410 complement(2605018..2605482) 1 NC_008228.1 PFAM: molybdopterin biosynthesis MoaE; KEGG: son:SO4449 molybdenum cofactor biosynthesis protein E; molybdopterin biosynthesis MoaE 2605482 4173410 Patl_2155 Pseudoalteromonas atlantica T6c molybdopterin biosynthesis MoaE YP_661727.1 2605018 R 342610 CDS YP_661728.1 109898473 4173411 complement(2605486..2605731) 1 NC_008228.1 PFAM: thiamineS; KEGG: ssn:SSO_0763 molybdopterin biosynthesis; sulfur transfer protein ThiS 2605731 4173411 Patl_2156 Pseudoalteromonas atlantica T6c sulfur transfer protein ThiS YP_661728.1 2605486 R 342610 CDS YP_661729.1 109898474 4173412 complement(2605728..2606228) 1 NC_008228.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: cps:CPS_4636 molybdenum cofactor biosynthesis protein C; molybdenum cofactor biosynthesis protein C 2606228 4173412 Patl_2157 Pseudoalteromonas atlantica T6c molybdenum cofactor biosynthesis protein C YP_661729.1 2605728 R 342610 CDS YP_661730.1 109898475 4173413 complement(2606232..2606777) 1 NC_008228.1 TIGRFAM: molybdenum cofactor synthesis domain molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: vvy:VV1199 molybdenum cofactor biosynthesis protein B; molybdenum cofactor biosynthesis protein B 2606777 4173413 Patl_2158 Pseudoalteromonas atlantica T6c molybdenum cofactor biosynthesis protein B YP_661730.1 2606232 R 342610 CDS YP_661731.1 109898476 4173414 complement(2606892..2607584) 1 NC_008228.1 KEGG: cps:CPS_4634 putative molybdopterin biosynthesis gene; putative molybdopterin biosynthesis gene 2607584 4173414 Patl_2159 Pseudoalteromonas atlantica T6c putative molybdopterin biosynthesis gene YP_661731.1 2606892 R 342610 CDS YP_661732.1 109898477 4173415 complement(2607601..2608569) 1 NC_008228.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 2608569 moaA 4173415 moaA Pseudoalteromonas atlantica T6c molybdenum cofactor biosynthesis protein A YP_661732.1 2607601 R 342610 CDS YP_661733.1 109898478 4173416 2609119..2610009 1 NC_008228.1 KEGG: cps:CPS_0521 hypothetical protein; hypothetical protein 2610009 4173416 Patl_2161 Pseudoalteromonas atlantica T6c hypothetical protein YP_661733.1 2609119 D 342610 CDS YP_661734.1 109898479 4173417 2610002..2610826 1 NC_008228.1 catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 2610826 4173417 Patl_2162 Pseudoalteromonas atlantica T6c mannosyl-3-phosphoglycerate phosphatase YP_661734.1 2610002 D 342610 CDS YP_661735.1 109898480 4173418 2610888..2612117 1 NC_008228.1 KEGG: hch:HCH_00270 glycosyltransferase involved in cell wall biogenesis; cell wall biosynthesis glycosyltransferase 2612117 4173418 Patl_2163 Pseudoalteromonas atlantica T6c cell wall biosynthesis glycosyltransferase YP_661735.1 2610888 D 342610 CDS YP_661736.1 109898481 4173419 2612143..2613903 1 NC_008228.1 PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: cps:CPS_0506 putative sucrose phosphorylase; alpha amylase 2613903 4173419 Patl_2164 Pseudoalteromonas atlantica T6c alpha amylase YP_661736.1 2612143 D 342610 CDS YP_661737.1 109898482 4173420 2614339..2614545 1 NC_008228.1 hypothetical protein 2614545 4173420 Patl_2165 Pseudoalteromonas atlantica T6c hypothetical protein YP_661737.1 2614339 D 342610 CDS YP_661738.1 109898483 4173421 2614657..2614875 1 NC_008228.1 PFAM: Calcium-binding EF-hand; KEGG: pha:PSHAa0019 calmodulin; calcium-binding EF-hand 2614875 4173421 Patl_2166 Pseudoalteromonas atlantica T6c calcium-binding EF-hand YP_661738.1 2614657 D 342610 CDS YP_661739.1 109898484 4173422 complement(2615075..2616058) 1 NC_008228.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: cps:CPS_3289 oxidoreductase, zinc-binding; zinc-binding alcohol dehydrogenase 2616058 4173422 Patl_2167 Pseudoalteromonas atlantica T6c zinc-binding alcohol dehydrogenase YP_661739.1 2615075 R 342610 CDS YP_661740.1 109898485 4173423 2616159..2617346 1 NC_008228.1 SMART: PUA; KEGG: son:SO1149 hypothetical SAM-dependent methyltransferase; PUA domain-containing protein 2617346 4173423 Patl_2168 Pseudoalteromonas atlantica T6c PUA domain-containing protein YP_661740.1 2616159 D 342610 CDS YP_661741.1 109898486 4173424 complement(2617479..2617781) 1 NC_008228.1 PFAM: type IV pilus assembly PilZ; KEGG: cps:CPS_2244 hypothetical protein; type IV pilus assembly PilZ 2617781 4173424 Patl_2169 Pseudoalteromonas atlantica T6c type IV pilus assembly PilZ YP_661741.1 2617479 R 342610 CDS YP_661742.1 109898487 4173425 complement(2617897..2621745) 1 NC_008228.1 KEGG: pha:PSHAa1144 helicase, ATP-dependent; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-like helicase-associated region protein of unknown function DUF1605; SMART: ATPase DEAD/DEAH box helicase-like; ATP-dependent helicase HrpA 2621745 4173425 Patl_2170 Pseudoalteromonas atlantica T6c ATP-dependent helicase HrpA YP_661742.1 2617897 R 342610 CDS YP_661743.1 109898488 4173426 complement(2621919..2622338) 1 NC_008228.1 PFAM: CBS domain containing protein; KEGG: cps:CPS_2242 CBS domain protein; hypothetical protein 2622338 4173426 Patl_2171 Pseudoalteromonas atlantica T6c hypothetical protein YP_661743.1 2621919 R 342610 CDS YP_661744.1 109898489 4173427 2622570..2624000 1 NC_008228.1 PFAM: Exonuclease, RNase T and DNA polymerase III Exonuclease-like; KEGG: pha:PSHAa1255 exodeoxyribonuclease I; exodeoxyribonuclease I 2624000 4173427 Patl_2172 Pseudoalteromonas atlantica T6c exodeoxyribonuclease I YP_661744.1 2622570 D 342610 CDS YP_661745.1 109898490 4172325 2624151..2625809 1 NC_008228.1 PFAM: protein of unknown function DUF342; KEGG: cps:CPS_3684 hypothetical protein; hypothetical protein 2625809 4172325 Patl_2173 Pseudoalteromonas atlantica T6c hypothetical protein YP_661745.1 2624151 D 342610 CDS YP_661746.1 109898491 4172326 complement(2625905..2626141) 1 NC_008228.1 KEGG: sdn:Sden_3510 hypothetical protein; hypothetical protein 2626141 4172326 Patl_2174 Pseudoalteromonas atlantica T6c hypothetical protein YP_661746.1 2625905 R 342610 CDS YP_661747.1 109898492 4172327 complement(2626295..2627167) 1 NC_008228.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase NADP oxidoreductase, coenzyme F420-dependent 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: ret:RHE_CH02433 probable 3-hydroxyisobutyrate dehydrogenase protein; 3-hydroxyisobutyrate dehydrogenase 2627167 4172327 Patl_2175 Pseudoalteromonas atlantica T6c 3-hydroxyisobutyrate dehydrogenase YP_661747.1 2626295 R 342610 CDS YP_661748.1 109898493 4172328 2627298..2627729 1 NC_008228.1 PFAM: glutathione peroxidase; KEGG: gka:GK1785 glutathione peroxidase; glutathione peroxidase 2627729 4172328 Patl_2176 Pseudoalteromonas atlantica T6c glutathione peroxidase YP_661748.1 2627298 D 342610 CDS YP_661749.1 109898494 4172329 complement(2627744..2628502) 1 NC_008228.1 PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: son:SO0558 smtA protein; type 11 methyltransferase 2628502 4172329 Patl_2177 Pseudoalteromonas atlantica T6c type 11 methyltransferase YP_661749.1 2627744 R 342610 CDS YP_661750.1 109898495 4172330 complement(2628540..2629301) 1 NC_008228.1 PFAM: protein of unknown function DUF34; KEGG: vvy:VV1026 hypothetical protein; hypothetical protein 2629301 4172330 Patl_2178 Pseudoalteromonas atlantica T6c hypothetical protein YP_661750.1 2628540 R 342610 CDS YP_661751.1 109898496 4172331 complement(2629462..2630907) 1 NC_008228.1 PFAM: DNA photolyase, FAD-binding DNA photolyase-like; KEGG: pha:PSHAb0453 putative deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photolyase 2630907 4172331 Patl_2179 Pseudoalteromonas atlantica T6c deoxyribodipyrimidine photolyase YP_661751.1 2629462 R 342610 CDS YP_661752.1 109898497 4172332 complement(2631132..2633741) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAb0299 putative TonB-dependent outer membrane receptor; TonB-dependent receptor 2633741 4172332 Patl_2180 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_661752.1 2631132 R 342610 CDS YP_661753.1 109898498 4172333 complement(2634108..2635142) 1 NC_008228.1 SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease 2635142 4172333 Patl_2181 Pseudoalteromonas atlantica T6c putative periplasmic protease YP_661753.1 2634108 R 342610 CDS YP_661754.1 109898499 4172334 complement(2635239..2637857) 1 NC_008228.1 KEGG: pha:PSHAa1344 hypothetical protein; hypothetical protein 2637857 4172334 Patl_2182 Pseudoalteromonas atlantica T6c hypothetical protein YP_661754.1 2635239 R 342610 CDS YP_661755.1 109898500 4172335 2638116..2638859 1 NC_008228.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ilo:IL1040 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2638859 4172335 Patl_2183 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_661755.1 2638116 D 342610 CDS YP_661756.1 109898501 4172336 complement(2638971..2640647) 1 NC_008228.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 2640647 4172336 Patl_2184 Pseudoalteromonas atlantica T6c glutaminyl-tRNA synthetase YP_661756.1 2638971 R 342610 CDS YP_661757.1 109898502 4172337 2640933..2641952 1 NC_008228.1 PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: son:SO2244 transcriptional regulator, LacI family; LacI family transcriptional regulator 2641952 4172337 Patl_2185 Pseudoalteromonas atlantica T6c LacI family transcriptional regulator YP_661757.1 2640933 D 342610 CDS YP_661758.1 109898503 4172338 complement(2641997..2643727) 1 NC_008228.1 PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: xcb:XC_1648 cyclomaltodextrin glucanotransferase (CGTase); alpha amylase 2643727 4172338 Patl_2186 Pseudoalteromonas atlantica T6c alpha amylase YP_661758.1 2641997 R 342610 CDS YP_661759.1 109898504 4172339 complement(2643750..2645258) 1 NC_008228.1 PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa1356 sugar transporter; major facilitator superfamily transporter 2645258 4172339 Patl_2187 Pseudoalteromonas atlantica T6c major facilitator superfamily transporter YP_661759.1 2643750 R 342610 CDS YP_661760.1 109898505 4172340 complement(2645619..2646707) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: cvi:CV0239 hypothetical protein; diguanylate cyclase 2646707 4172340 Patl_2188 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_661760.1 2645619 R 342610 CDS YP_661761.1 109898506 4172341 complement(2646920..2647366) 1 NC_008228.1 TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily; KEGG: rso:RSc1773 putative thioesterase protein; 4-hydroxybenzoyl-CoA thioesterase 2647366 4172341 Patl_2189 Pseudoalteromonas atlantica T6c 4-hydroxybenzoyl-CoA thioesterase YP_661761.1 2646920 R 342610 CDS YP_661762.1 109898507 4172342 complement(2647569..2648339) 1 NC_008228.1 PFAM: Rhomboid-like protein; KEGG: xoo:XOO4627 hypothetical protein; rhomboid-like protein 2648339 4172342 Patl_2190 Pseudoalteromonas atlantica T6c rhomboid-like protein YP_661762.1 2647569 R 342610 CDS YP_661763.1 109898508 4172343 2648548..2648913 1 NC_008228.1 TIGRFAM: conserved hypothetical protein; PFAM: arsenate reductase and related; KEGG: ppr:PBPRA0845 hypothetical arsenate reductase; hypothetical protein 2648913 4172343 Patl_2191 Pseudoalteromonas atlantica T6c hypothetical protein YP_661763.1 2648548 D 342610 CDS YP_661764.1 109898509 4172344 2648910..2650040 1 NC_008228.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2650040 4172344 Patl_2192 Pseudoalteromonas atlantica T6c succinyl-diaminopimelate desuccinylase YP_661764.1 2648910 D 342610 CDS YP_661765.1 109898510 4172345 2650037..2650738 1 NC_008228.1 PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: ilo:IL1456 D-alanyl-D-alanine carboxypeptidase; peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins 2650738 4172345 Patl_2193 Pseudoalteromonas atlantica T6c peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins YP_661765.1 2650037 D 342610 CDS YP_661766.1 109898511 4172346 complement(2650965..2651291) 1 NC_008228.1 PFAM: protein of unknown function DUF74; KEGG: eca:ECA2666 hypothetical protein; hypothetical protein 2651291 4172346 Patl_2194 Pseudoalteromonas atlantica T6c hypothetical protein YP_661766.1 2650965 R 342610 CDS YP_661767.1 109898512 4172347 complement(2651408..2652460) 1 NC_008228.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 2652460 4172347 Patl_2195 Pseudoalteromonas atlantica T6c succinylglutamate desuccinylase YP_661767.1 2651408 R 342610 CDS YP_661768.1 109898513 4172348 complement(2652565..2653887) 1 NC_008228.1 PFAM: conserved hypothetical protein EAL; KEGG: pca:Pcar_2565 sensory box/GGDEF family protein; diguanylate cyclase/phosphodiesterase 2653887 4172348 Patl_2196 Pseudoalteromonas atlantica T6c diguanylate cyclase/phosphodiesterase YP_661768.1 2652565 R 342610 CDS YP_661769.1 109898514 4172349 complement(2654049..2656544) 1 NC_008228.1 KEGG: vfi:VFA0810 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35; glycogen/starch/alpha-glucan phosphorylase 2656544 4172349 Patl_2197 Pseudoalteromonas atlantica T6c glycogen/starch/alpha-glucan phosphorylase YP_661769.1 2654049 R 342610 CDS YP_661770.1 109898515 4172350 complement(2656797..2658446) 1 NC_008228.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 2658446 4172350 Patl_2198 Pseudoalteromonas atlantica T6c phosphoglucomutase YP_661770.1 2656797 R 342610 CDS YP_661771.1 109898516 4172351 complement(2658460..2658984) 1 NC_008228.1 KEGG: ilo:IL1472 negative regulator of replication initiation; negative regulator of replication initiation 2658984 4172351 Patl_2199 Pseudoalteromonas atlantica T6c negative regulator of replication initiation YP_661771.1 2658460 R 342610 CDS YP_661772.1 109898517 4172352 complement(2659148..2660218) 1 NC_008228.1 KEGG: yps:YPTB3015 hypothetical protein; putative RNA 2'-O-ribose methyltransferase 2660218 4172352 Patl_2200 Pseudoalteromonas atlantica T6c putative RNA 2'-O-ribose methyltransferase YP_661772.1 2659148 R 342610 CDS YP_661773.1 109898518 4172353 complement(2660222..2660593) 1 NC_008228.1 PFAM: protein of unknown function DUF423; KEGG: ppr:PBPRA2988 conserved hypothetical protein; hypothetical protein 2660593 4172353 Patl_2201 Pseudoalteromonas atlantica T6c hypothetical protein YP_661773.1 2660222 R 342610 CDS YP_661774.1 109898519 4172354 complement(2660695..2661318) 1 NC_008228.1 KEGG: pha:PSHAa1065 hypothetical protein; hypothetical protein 2661318 4172354 Patl_2202 Pseudoalteromonas atlantica T6c hypothetical protein YP_661774.1 2660695 R 342610 CDS YP_661775.1 109898520 4172355 complement(2661302..2662213) 1 NC_008228.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 2662213 4172355 Patl_2203 Pseudoalteromonas atlantica T6c DNA-binding transcriptional activator GcvA YP_661775.1 2661302 R 342610 CDS YP_661776.1 109898521 4172356 2662433..2662717 1 NC_008228.1 hypothetical protein 2662717 4172356 Patl_2204 Pseudoalteromonas atlantica T6c hypothetical protein YP_661776.1 2662433 D 342610 CDS YP_661777.1 109898522 4172357 complement(2662859..2663710) 1 NC_008228.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 2663710 4172357 Patl_2205 Pseudoalteromonas atlantica T6c 2-dehydro-3-deoxyphosphooctonate aldolase YP_661777.1 2662859 R 342610 CDS YP_661778.1 109898523 4172358 2664143..2665576 1 NC_008228.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 2665576 4172358 Patl_2206 Pseudoalteromonas atlantica T6c (dimethylallyl)adenosine tRNA methylthiotransferase YP_661778.1 2664143 D 342610 CDS YP_661779.1 109898524 4172359 2665605..2666642 1 NC_008228.1 PFAM: PhoH-like protein; KEGG: vpa:VP0732 PhoH family protein; PhoH-like protein 2666642 4172359 Patl_2207 Pseudoalteromonas atlantica T6c PhoH-like protein YP_661779.1 2665605 D 342610 CDS YP_661780.1 109898525 4172360 2666639..2667097 1 NC_008228.1 PFAM: protein of unknown function UPF0054; KEGG: sbo:SBO_0523 hypothetical protein; hypothetical protein 2667097 4172360 Patl_2208 Pseudoalteromonas atlantica T6c hypothetical protein YP_661780.1 2666639 D 342610 CDS YP_661781.1 109898526 4172361 2667131..2667991 1 NC_008228.1 PFAM: CBS domain containing protein transporter-associated region; KEGG: ilo:IL0944 Mg/Co transporter; hypothetical protein 2667991 4172361 Patl_2209 Pseudoalteromonas atlantica T6c hypothetical protein YP_661781.1 2667131 D 342610 CDS YP_661782.1 109898527 4172362 2668006..2669499 1 NC_008228.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: vfi:VF0755 apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 2669499 4172362 Patl_2210 Pseudoalteromonas atlantica T6c apolipoprotein N-acyltransferase YP_661782.1 2668006 D 342610 CDS YP_661783.1 109898528 4172363 complement(2669616..2670497) 1 NC_008228.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pha:PSHAa0058 hypothetical protein; hypothetical protein 2670497 4172363 Patl_2211 Pseudoalteromonas atlantica T6c hypothetical protein YP_661783.1 2669616 R 342610 CDS YP_661784.1 109898529 4172364 2671058..2671618 1 NC_008228.1 PFAM: ThiJ/PfpI; KEGG: eli:ELI_02220 protease; ThiJ/PfpI 2671618 4172364 Patl_2212 Pseudoalteromonas atlantica T6c ThiJ/PfpI YP_661784.1 2671058 D 342610 CDS YP_661785.1 109898530 4172365 complement(2671778..2672254) 1 NC_008228.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB region; KEGG: hit:NTHI1658 transcription elongation factor GreA; transcription elongation factor GreA 2672254 4172365 Patl_2213 Pseudoalteromonas atlantica T6c transcription elongation factor GreA YP_661785.1 2671778 R 342610 CDS YP_661786.1 109898531 4172366 complement(2672354..2675572) 1 NC_008228.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 2675572 carB 4172366 carB Pseudoalteromonas atlantica T6c carbamoyl phosphate synthase large subunit YP_661786.1 2672354 R 342610 CDS YP_661787.1 109898532 4172367 complement(2675611..2676756) 1 NC_008228.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I Carbamoyl-phosphate synthase, small chain; KEGG: vch:VC2390 carbamoyl-phosphate synthase, small subunit; carbamoyl-phosphate synthase small subunit 2676756 4172367 Patl_2215 Pseudoalteromonas atlantica T6c carbamoyl-phosphate synthase small subunit YP_661787.1 2675611 R 342610 CDS YP_661788.1 109898533 4172368 complement(2677047..2677850) 1 NC_008228.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 2677850 4172368 Patl_2216 Pseudoalteromonas atlantica T6c dihydrodipicolinate reductase YP_661788.1 2677047 R 342610 CDS YP_661789.1 109898534 4172369 complement(2677940..2678413) 1 NC_008228.1 PFAM: regulatory proteins, AsnC/Lrp; KEGG: pha:PSHAa2263 leucine-responsive regulatory protein; AsnC family transcriptional regulator 2678413 4172369 Patl_2217 Pseudoalteromonas atlantica T6c AsnC family transcriptional regulator YP_661789.1 2677940 R 342610 CDS YP_661790.1 109898535 4172370 complement(2678590..2682396) 1 NC_008228.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the protein from Pseudomonas does not have this domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 2682396 4172370 Patl_2218 Pseudoalteromonas atlantica T6c bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_661790.1 2678590 R 342610 CDS YP_661791.1 109898536 4172371 2682815..2683504 1 NC_008228.1 PFAM: cytochrome B561; KEGG: cps:CPS_2796 cytochrome b561 family protein; cytochrome B561 2683504 4172371 Patl_2219 Pseudoalteromonas atlantica T6c cytochrome B561 YP_661791.1 2682815 D 342610 CDS YP_661792.1 109898537 4172372 complement(2683689..2684390) 1 NC_008228.1 PFAM: protein of unknown function DUF541; KEGG: ilo:IL1740 hypothetical protein; hypothetical protein 2684390 4172372 Patl_2220 Pseudoalteromonas atlantica T6c hypothetical protein YP_661792.1 2683689 R 342610 CDS YP_661793.1 109898538 4172373 complement(2684534..2685385) 1 NC_008228.1 PFAM: Rhodanese-like; KEGG: vch:VCA0620 thiosulfate sulfurtransferase SseA, putative; 3-mercaptopyruvate sulfurtransferase 2685385 4172373 Patl_2221 Pseudoalteromonas atlantica T6c 3-mercaptopyruvate sulfurtransferase YP_661793.1 2684534 R 342610 CDS YP_661794.1 109898539 4172374 2685730..2687343 1 NC_008228.1 PFAM: adenosine/AMP deaminase; KEGG: lpf:lpl0535 hypothetical protein; adenosine deaminase 2687343 4172374 Patl_2222 Pseudoalteromonas atlantica T6c adenosine deaminase YP_661794.1 2685730 D 342610 CDS YP_661795.1 109898540 4172375 2687391..2688851 1 NC_008228.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pfo:Pfl_2573 xanthine/uracil permease; uracil-xanthine permease 2688851 4172375 Patl_2223 Pseudoalteromonas atlantica T6c uracil-xanthine permease YP_661795.1 2687391 D 342610 CDS YP_661796.1 109898541 4172376 2689001..2690380 1 NC_008228.1 catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.; hydroxydechloroatrazine ethylaminohydrolase 2690380 4172376 Patl_2224 Pseudoalteromonas atlantica T6c hydroxydechloroatrazine ethylaminohydrolase YP_661796.1 2689001 D 342610 CDS YP_661797.1 109898542 4172377 2690697..2693135 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ccr:CC2660 TonB-dependent receptor; TonB-dependent receptor 2693135 4172377 Patl_2225 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_661797.1 2690697 D 342610 CDS YP_661798.1 109898543 4172378 2693219..2694946 1 NC_008228.1 PFAM: protein of unknown function DUF985 purine nucleoside permease; KEGG: gox:GOX1437 purine nucleoside permease; purine nucleoside permease 2694946 4172378 Patl_2226 Pseudoalteromonas atlantica T6c purine nucleoside permease YP_661798.1 2693219 D 342610 CDS YP_661799.1 109898544 4172379 2695242..2695547 1 NC_008228.1 hypothetical protein 2695547 4172379 Patl_2227 Pseudoalteromonas atlantica T6c hypothetical protein YP_661799.1 2695242 D 342610 CDS YP_661800.1 109898545 4172380 complement(2695641..2696222) 1 NC_008228.1 PFAM: OmpA-like transmembrane region; KEGG: vpa:VP0636 putative outer membrane protein A; OmpA-like transmembrane region 2696222 4172380 Patl_2228 Pseudoalteromonas atlantica T6c OmpA-like transmembrane region YP_661800.1 2695641 R 342610 CDS YP_661801.1 109898546 4172381 2696765..2697982 1 NC_008228.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: biotin/lipoyl attachment secretion protein HlyD; KEGG: son:SO1925 HlyD family secretion protein; RND family efflux transporter MFP subunit 2697982 4172381 Patl_2229 Pseudoalteromonas atlantica T6c RND family efflux transporter MFP subunit YP_661801.1 2696765 D 342610 CDS YP_661802.1 109898547 4172382 2697998..2701468 1 NC_008228.1 PFAM: acriflavin resistance protein; KEGG: son:SO1924 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 2701468 4172382 Patl_2230 Pseudoalteromonas atlantica T6c acriflavin resistance protein YP_661802.1 2697998 D 342610 CDS YP_661803.1 109898548 4172383 2701461..2704583 1 NC_008228.1 PFAM: acriflavin resistance protein; KEGG: son:SO1923 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 2704583 4172383 Patl_2231 Pseudoalteromonas atlantica T6c acriflavin resistance protein YP_661803.1 2701461 D 342610 CDS YP_661804.1 109898549 4172384 2704675..2705691 1 NC_008228.1 PFAM: aldo/keto reductase; KEGG: atu:Atu1524 hypothetical protein; aldo/keto reductase 2705691 4172384 Patl_2232 Pseudoalteromonas atlantica T6c aldo/keto reductase YP_661804.1 2704675 D 342610 CDS YP_661805.1 109898550 4172385 2705709..2706305 1 NC_008228.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: vfi:VF0653 23S rRNA methyltransferase; tRNA/rRNA methyltransferase SpoU 2706305 4172385 Patl_2233 Pseudoalteromonas atlantica T6c tRNA/rRNA methyltransferase SpoU YP_661805.1 2705709 D 342610 CDS YP_661806.1 109898551 4172386 2706560..2707783 1 NC_008228.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: cps:CPS_0746 efflux transporter, MFP subunit, AcrA/E family; RND family efflux transporter MFP subunit 2707783 4172386 Patl_2234 Pseudoalteromonas atlantica T6c RND family efflux transporter MFP subunit YP_661806.1 2706560 D 342610 CDS YP_661807.1 109898552 4172387 2707796..2710864 1 NC_008228.1 PFAM: acriflavin resistance protein; KEGG: cps:CPS_0745 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 2710864 4172387 Patl_2235 Pseudoalteromonas atlantica T6c acriflavin resistance protein YP_661807.1 2707796 D 342610 CDS YP_661808.1 109898553 4172388 complement(2710968..2713148) 1 NC_008228.1 PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region molybdopterin oxidoreductase Fe4S4 region; KEGG: hch:HCH_06645 anaerobic dehydrogenase, typically selenocysteine-containing; formate dehydrogenase 2713148 4172388 Patl_2236 Pseudoalteromonas atlantica T6c formate dehydrogenase YP_661808.1 2710968 R 342610 CDS YP_661809.1 109898554 4172389 complement(2713261..2713584) 1 NC_008228.1 PFAM: protein of unknown function DUF1272; KEGG: bja:blr0341 hypothetical protein; hypothetical protein 2713584 4172389 Patl_2237 Pseudoalteromonas atlantica T6c hypothetical protein YP_661809.1 2713261 R 342610 CDS YP_661810.1 109898555 4172390 2713761..2715026 1 NC_008228.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: xcv:XCV3755 membrane fusion protein; RND family efflux transporter MFP subunit 2715026 4172390 Patl_2238 Pseudoalteromonas atlantica T6c RND family efflux transporter MFP subunit YP_661810.1 2713761 D 342610 CDS YP_661811.1 109898556 4172391 2715099..2715800 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: xcb:XC_3665 ABC transporter ATP-binding protein; ABC transporter-like protein 2715800 4172391 Patl_2239 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_661811.1 2715099 D 342610 CDS YP_661812.1 109898557 4172392 2715793..2717100 1 NC_008228.1 PFAM: protein of unknown function DUF214; KEGG: xac:XAC3640 ABC transporter ATP-binding protein; hypothetical protein 2717100 4172392 Patl_2240 Pseudoalteromonas atlantica T6c hypothetical protein YP_661812.1 2715793 D 342610 CDS YP_661813.1 109898558 4172393 2717114..2718340 1 NC_008228.1 PFAM: protein of unknown function DUF214; KEGG: xcb:XC_3667 ABC transporter permease; hypothetical protein 2718340 4172393 Patl_2241 Pseudoalteromonas atlantica T6c hypothetical protein YP_661813.1 2717114 D 342610 CDS YP_661814.1 109898559 4172394 complement(2718367..2719275) 1 NC_008228.1 KEGG: son:SO4005 hypothetical protein; hypothetical protein 2719275 4172394 Patl_2242 Pseudoalteromonas atlantica T6c hypothetical protein YP_661814.1 2718367 R 342610 CDS YP_661815.1 109898560 4172395 complement(2719281..2720555) 1 NC_008228.1 KEGG: son:SO4006 hypothetical protein; hypothetical protein 2720555 4172395 Patl_2243 Pseudoalteromonas atlantica T6c hypothetical protein YP_661815.1 2719281 R 342610 CDS YP_661816.1 109898561 4172396 complement(2720552..2721175) 1 NC_008228.1 KEGG: son:SO4007 hypothetical protein; hypothetical protein 2721175 4172396 Patl_2244 Pseudoalteromonas atlantica T6c hypothetical protein YP_661816.1 2720552 R 342610 CDS YP_661817.1 109898562 4172397 complement(2721172..2724873) 1 NC_008228.1 KEGG: son:SO4008 hypothetical protein; hypothetical protein 2724873 4172397 Patl_2245 Pseudoalteromonas atlantica T6c hypothetical protein YP_661817.1 2721172 R 342610 CDS YP_661818.1 109898563 4172400 2726999..2729290 1 NC_008228.1 PFAM: conserved hypothetical protein EAL; KEGG: ilo:IL1784 disrupted signaling protein (xGGDEF and EAL domains); diguanylate cyclase/phosphodiesterase 2729290 4172400 Patl_2246 Pseudoalteromonas atlantica T6c diguanylate cyclase/phosphodiesterase YP_661818.1 2726999 D 342610 CDS YP_661819.1 109898564 4172401 complement(2729490..2731025) 1 NC_008228.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer PAS fold-3 PAS fold; KEGG: pha:PSHAa0395 aerotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 2731025 4172401 Patl_2247 Pseudoalteromonas atlantica T6c methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_661819.1 2729490 R 342610 CDS YP_661820.1 109898565 4172402 complement(2731316..2732311) 1 NC_008228.1 PFAM: response regulator receiver metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region; KEGG: pha:PSHAa1150 response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase); response regulator receiver modulated metal dependent phosphohydrolase 2732311 4172402 Patl_2248 Pseudoalteromonas atlantica T6c response regulator receiver modulated metal dependent phosphohydrolase YP_661820.1 2731316 R 342610 CDS YP_661821.1 109898566 4172403 complement(2732348..2735779) 1 NC_008228.1 KEGG: pha:PSHAa1151 two-component member protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like MHYT PAS fold-3 PAS fold; SMART: PAS PAC motif; multi-sensor hybrid histidine kinase 2735779 4172403 Patl_2249 Pseudoalteromonas atlantica T6c multi-sensor hybrid histidine kinase YP_661821.1 2732348 R 342610 CDS YP_661822.1 109898567 4172404 2735920..2736387 1 NC_008228.1 hypothetical protein 2736387 4172404 Patl_2250 Pseudoalteromonas atlantica T6c hypothetical protein YP_661822.1 2735920 D 342610 CDS YP_661823.1 109898568 4172405 2736527..2737249 1 NC_008228.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: hch:HCH_04130 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two component transcriptional regulator 2737249 4172405 Patl_2251 Pseudoalteromonas atlantica T6c two component transcriptional regulator YP_661823.1 2736527 D 342610 CDS YP_661824.1 109898569 4172406 2737324..2738556 1 NC_008228.1 PFAM: histidine kinase, HAMP region histidine kinase A-like; KEGG: hch:HCH_04334 signal transduction histidine kinase; histidine kinase 2738556 4172406 Patl_2252 Pseudoalteromonas atlantica T6c histidine kinase YP_661824.1 2737324 D 342610 CDS YP_661825.1 109898570 4172407 2738649..2740991 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL GAF; KEGG: dar:Daro_3445 PAS:GGDEF; GAF sensor-containing diguanylate cyclase/phosphodiesterase 2740991 4172407 Patl_2253 Pseudoalteromonas atlantica T6c GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_661825.1 2738649 D 342610 CDS YP_661826.1 109898571 4172408 2741107..2741541 1 NC_008228.1 PFAM: regulatory protein, MarR; KEGG: pha:PSHAb0538 putative transcription regulator; MarR family transcriptional regulator 2741541 4172408 Patl_2254 Pseudoalteromonas atlantica T6c MarR family transcriptional regulator YP_661826.1 2741107 D 342610 CDS YP_661827.1 109898572 4172409 complement(2741552..2742547) 1 NC_008228.1 PFAM: aldo/keto reductase; KEGG: eca:ECA0736 putative aldo/keto reductase; aldo/keto reductase 2742547 4172409 Patl_2255 Pseudoalteromonas atlantica T6c aldo/keto reductase YP_661827.1 2741552 R 342610 CDS YP_661828.1 109898573 4172410 2742736..2743641 1 NC_008228.1 PFAM: helix-turn-helix, AraC type AraC-type transcriptional regulator-like; KEGG: hch:HCH_03982 AraC-type DNA-binding domain-containing protein; AraC family transcriptional regulator 2743641 4172410 Patl_2256 Pseudoalteromonas atlantica T6c AraC family transcriptional regulator YP_661828.1 2742736 D 342610 CDS YP_661829.1 109898574 4172411 2743669..2747001 1 NC_008228.1 PFAM: MscS Mechanosensitive ion channel; KEGG: noc:Noc_2151 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 2747001 4172411 Patl_2257 Pseudoalteromonas atlantica T6c mechanosensitive ion channel protein MscS YP_661829.1 2743669 D 342610 CDS YP_661830.1 109898575 4172412 2747216..2749342 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_1927 TonB dependent receptor; TonB-dependent receptor 2749342 4172412 Patl_2258 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_661830.1 2747216 D 342610 CDS YP_661831.1 109898576 4172413 complement(2749403..2750167) 1 NC_008228.1 PFAM: Siderophore-interacting protein FAD-binding 9, siderophore-interacting; KEGG: pha:PSHAb0539 putative protein involved in iron transport; FAD-binding siderophore-interacting protein 2750167 4172413 Patl_2259 Pseudoalteromonas atlantica T6c FAD-binding siderophore-interacting protein YP_661831.1 2749403 R 342610 CDS YP_661832.1 109898577 4172414 complement(2750349..2751179) 1 NC_008228.1 KEGG: LOC433220; similar to proline-rich antigen; hypothetical protein 2751179 4172414 Patl_2260 Pseudoalteromonas atlantica T6c hypothetical protein YP_661832.1 2750349 R 342610 CDS YP_661833.1 109898578 4172415 complement(2751309..2752019) 1 NC_008228.1 hypothetical protein 2752019 4172415 Patl_2261 Pseudoalteromonas atlantica T6c hypothetical protein YP_661833.1 2751309 R 342610 CDS YP_661834.1 109898579 4172416 complement(2752026..2752298) 1 NC_008228.1 PFAM: helix-turn-helix motif; XRE family transcriptional regulator 2752298 4172416 Patl_2262 Pseudoalteromonas atlantica T6c XRE family transcriptional regulator YP_661834.1 2752026 R 342610 CDS YP_661835.1 109898580 4172417 complement(2752487..2754121) 1 NC_008228.1 PFAM: TrkA-N sodium/hydrogen exchanger; KEGG: cps:CPS_1761 putative glutathione-regulated potassium-efflux system protein KefB; sodium/hydrogen exchanger 2754121 4172417 Patl_2263 Pseudoalteromonas atlantica T6c sodium/hydrogen exchanger YP_661835.1 2752487 R 342610 CDS YP_661836.1 109898581 4172418 2754457..2756322 1 NC_008228.1 KEGG: gvi:gll2743 hypothetical protein; hypothetical protein 2756322 4172418 Patl_2264 Pseudoalteromonas atlantica T6c hypothetical protein YP_661836.1 2754457 D 342610 CDS YP_661837.1 109898582 4172419 2756484..2756843 1 NC_008228.1 KEGG: cps:CPS_1415 hypothetical protein; hypothetical protein 2756843 4172419 Patl_2265 Pseudoalteromonas atlantica T6c hypothetical protein YP_661837.1 2756484 D 342610 CDS YP_661838.1 109898583 4172421 complement(2757377..2758762) 1 NC_008228.1 TIGRFAM: gluconate transporter; PFAM: Gluconate transporter Citrate transporter; KEGG: vvy:VV0061 putative gluconate permease; gluconate transporter 2758762 4172421 Patl_2267 Pseudoalteromonas atlantica T6c gluconate transporter YP_661838.1 2757377 R 342610 CDS YP_661839.1 109898584 4172422 complement(2758996..2759349) 1 NC_008228.1 PFAM: Endoribonuclease L-PSP; KEGG: vfi:VFA0002 translation initiation inhibitor; endoribonuclease L-PSP 2759349 4172422 Patl_2268 Pseudoalteromonas atlantica T6c endoribonuclease L-PSP YP_661839.1 2758996 R 342610 CDS YP_661840.1 109898585 4172423 complement(2759545..2762418) 1 NC_008228.1 PFAM: UvrD/REP helicase; KEGG: cps:CPS_2454 helicase IV; UvrD/REP helicase 2762418 4172423 Patl_2269 Pseudoalteromonas atlantica T6c UvrD/REP helicase YP_661840.1 2759545 R 342610 CDS YP_661841.1 109898586 4172424 complement(2762637..2763257) 1 NC_008228.1 hypothetical protein 2763257 4172424 Patl_2270 Pseudoalteromonas atlantica T6c hypothetical protein YP_661841.1 2762637 R 342610 CDS YP_661842.1 109898587 4172425 2764211..2764723 1 NC_008228.1 KEGG: mma:MM3260 hypothetical protein; hypothetical protein 2764723 4172425 Patl_2271 Pseudoalteromonas atlantica T6c hypothetical protein YP_661842.1 2764211 D 342610 CDS YP_661843.1 109898588 4172426 2764799..2765425 1 NC_008228.1 PFAM: protein of unknown function UPF0126; KEGG: pha:PSHAb0445 hypothetical protein; hypothetical protein 2765425 4172426 Patl_2272 Pseudoalteromonas atlantica T6c hypothetical protein YP_661843.1 2764799 D 342610 CDS YP_661844.1 109898589 4172427 complement(2765464..2766147) 1 NC_008228.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: bur:Bcep18194_C7101 2OG-Fe(II) oxygenase; putative hydroxylase 2766147 4172427 Patl_2273 Pseudoalteromonas atlantica T6c putative hydroxylase YP_661844.1 2765464 R 342610 CDS YP_661845.1 109898590 4172428 complement(2766266..2767375) 1 NC_008228.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: nwi:Nwi_0702 FMN-dependent alpha-hydroxy acid dehydrogenase; (S)-2-hydroxy-acid oxidase 2767375 4172428 Patl_2274 Pseudoalteromonas atlantica T6c (S)-2-hydroxy-acid oxidase YP_661845.1 2766266 R 342610 CDS YP_661846.1 109898591 4172429 complement(2767476..2769815) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: rpa:RPA3480 putative outer membrane receptor for iron transport; TonB-dependent receptor 2769815 4172429 Patl_2275 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_661846.1 2767476 R 342610 CDS YP_661847.1 109898592 4172430 complement(2769822..2770832) 1 NC_008228.1 TIGRFAM: TonB family protein; KEGG: pst:PSPTO0067 tonB protein; TonB family protein 2770832 4172430 Patl_2276 Pseudoalteromonas atlantica T6c TonB family protein YP_661847.1 2769822 R 342610 CDS YP_661848.1 109898593 4172431 complement(2770832..2771251) 1 NC_008228.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sbo:SBO_2999 ExbD; biopolymer transport protein ExbD/TolR 2771251 4172431 Patl_2277 Pseudoalteromonas atlantica T6c biopolymer transport protein ExbD/TolR YP_661848.1 2770832 R 342610 CDS YP_661849.1 109898594 4172432 complement(2771248..2771673) 1 NC_008228.1 KEGG: jan:Jann_2129 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 2771673 4172432 Patl_2278 Pseudoalteromonas atlantica T6c biopolymer transport protein ExbD/TolR YP_661849.1 2771248 R 342610 CDS YP_661850.1 109898595 4172433 complement(2771679..2772380) 1 NC_008228.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: jan:Jann_2130 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2772380 4172433 Patl_2279 Pseudoalteromonas atlantica T6c MotA/TolQ/ExbB proton channel YP_661850.1 2771679 R 342610 CDS YP_661851.1 109898596 4172434 complement(2772868..2773893) 1 NC_008228.1 KEGG: cps:CPS_2514 hypothetical protein; hypothetical protein 2773893 4172434 Patl_2280 Pseudoalteromonas atlantica T6c hypothetical protein YP_661851.1 2772868 R 342610 CDS YP_661852.1 109898597 4172435 complement(2773921..2776770) 1 NC_008228.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding protein of unknown function DUF224, cysteine-rich region FAD linked oxidase-like; KEGG: vvy:VVA1265 Fe-S oxidoreductase; FAD linked oxidase-like protein 2776770 4172435 Patl_2281 Pseudoalteromonas atlantica T6c FAD linked oxidase-like protein YP_661852.1 2773921 R 342610 CDS YP_661853.1 109898598 4172436 2777770..2779401 1 NC_008228.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 2779401 4172436 Patl_2282 Pseudoalteromonas atlantica T6c phosphoenolpyruvate carboxykinase YP_661853.1 2777770 D 342610 CDS YP_661854.1 109898599 4172437 2779649..2780005 1 NC_008228.1 PFAM: protein of unknown function DUF1428; KEGG: lpp:lpp2085 hypothetical protein; hypothetical protein 2780005 4172437 Patl_2283 Pseudoalteromonas atlantica T6c hypothetical protein YP_661854.1 2779649 D 342610 CDS YP_661855.1 109898600 4172438 2780382..2782100 1 NC_008228.1 PFAM: TrkA-N sodium/hydrogen exchanger; KEGG: hch:HCH_06854 Kef-type K+ transport system, predicted NAD-binding component; sodium/hydrogen exchanger 2782100 4172438 Patl_2284 Pseudoalteromonas atlantica T6c sodium/hydrogen exchanger YP_661855.1 2780382 D 342610 CDS YP_661856.1 109898601 4172439 2782102..2783073 1 NC_008228.1 PFAM: UspA; KEGG: noc:Noc_2951 universal stress protein, UspA; hypothetical protein 2783073 4172439 Patl_2285 Pseudoalteromonas atlantica T6c hypothetical protein YP_661856.1 2782102 D 342610 CDS YP_661857.1 109898602 4172440 2783347..2786061 1 NC_008228.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase-like Haloacid dehalogenase-like hydrolase E1-E2 ATPase-associated region; KEGG: hch:HCH_06855 cation transport ATPase; P-type HAD superfamily ATPase 2786061 4172440 Patl_2286 Pseudoalteromonas atlantica T6c P-type HAD superfamily ATPase YP_661857.1 2783347 D 342610 CDS YP_661858.1 109898603 4172441 complement(2786213..2787022) 1 NC_008228.1 PFAM: oxidoreductase FAD/NAD(P)-binding Oxidoreductase FAD-binding region; KEGG: ilo:IL2501 ferredoxin-NADP reductase; ferredoxin--NADP(+) reductase 2787022 4172441 Patl_2287 Pseudoalteromonas atlantica T6c ferredoxin--NADP(+) reductase YP_661858.1 2786213 R 342610 CDS YP_661859.1 109898604 4172442 2787537..2790827 1 NC_008228.1 PFAM: phosphorylase kinase alphabeta; KEGG: syf:Synpcc7942_1650 phosphorylase kinase alpha subunit; phosphorylase kinase alphabeta 2790827 4172442 Patl_2288 Pseudoalteromonas atlantica T6c phosphorylase kinase alphabeta YP_661859.1 2787537 D 342610 CDS YP_661860.1 109898605 4172443 2791181..2791795 1 NC_008228.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cps:CPS_4719 transporter, LysE family; lysine exporter protein LysE/YggA 2791795 4172443 Patl_2289 Pseudoalteromonas atlantica T6c lysine exporter protein LysE/YggA YP_661860.1 2791181 D 342610 CDS YP_661861.1 109898606 4172444 complement(2791889..2792536) 1 NC_008228.1 PFAM: regulatory protein, LuxR response regulator receiver Sigma-70, region 4 type 2; KEGG: cps:CPS_1406 DNA-binding response regulator; two component LuxR family transcriptional regulator 2792536 4172444 Patl_2290 Pseudoalteromonas atlantica T6c two component LuxR family transcriptional regulator YP_661861.1 2791889 R 342610 CDS YP_661862.1 109898607 4172445 complement(2792533..2793927) 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like histidine kinase, dimerisation and phosphoacceptor region Cache, type 2; KEGG: cps:CPS_1405 sensor histidine kinase; sensor signal transduction histidine kinase 2793927 4172445 Patl_2291 Pseudoalteromonas atlantica T6c sensor signal transduction histidine kinase YP_661862.1 2792533 R 342610 CDS YP_661863.1 109898608 4172446 2794171..2795244 1 NC_008228.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: cps:CPS_0129 extracellular solute-binding protein, family 7; TRAP dicarboxylate transporter subunit DctP 2795244 4172446 Patl_2292 Pseudoalteromonas atlantica T6c TRAP dicarboxylate transporter subunit DctP YP_661863.1 2794171 D 342610 CDS YP_661864.1 109898609 4172447 2795386..2795916 1 NC_008228.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: cps:CPS_0130 C4-dicarboxylate transporter family protein, DctQ subunit; tripartite ATP-independent periplasmic transporter DctQ 2795916 4172447 Patl_2293 Pseudoalteromonas atlantica T6c tripartite ATP-independent periplasmic transporter DctQ YP_661864.1 2795386 D 342610 CDS YP_661865.1 109898610 4172448 2795916..2797196 1 NC_008228.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: cps:CPS_0131 C4-dicarboxylate transporter family protein, DctM subunit; TRAP dicarboxylate transporter subunit DctM 2797196 4172448 Patl_2294 Pseudoalteromonas atlantica T6c TRAP dicarboxylate transporter subunit DctM YP_661865.1 2795916 D 342610 CDS YP_661866.1 109898611 4172449 2797215..2798246 1 NC_008228.1 hypothetical protein 2798246 4172449 Patl_2295 Pseudoalteromonas atlantica T6c hypothetical protein YP_661866.1 2797215 D 342610 CDS YP_661867.1 109898612 4172450 2798350..2798730 1 NC_008228.1 hypothetical protein 2798730 4172450 Patl_2296 Pseudoalteromonas atlantica T6c hypothetical protein YP_661867.1 2798350 D 342610 CDS YP_661868.1 109898613 4172451 complement(2798796..2799338) 1 NC_008228.1 PFAM: superoxide dismutase, copper/zinc binding; KEGG: vpa:VPA1514 superoxide dismutase, Cu-Zn; superoxide dismutase, copper/zinc binding 2799338 4172451 Patl_2297 Pseudoalteromonas atlantica T6c superoxide dismutase, copper/zinc binding YP_661868.1 2798796 R 342610 CDS YP_661869.1 109898614 4172452 2799741..2800136 1 NC_008228.1 hypothetical protein 2800136 4172452 Patl_2298 Pseudoalteromonas atlantica T6c hypothetical protein YP_661869.1 2799741 D 342610 CDS YP_661870.1 109898615 4172453 2800292..2800537 1 NC_008228.1 hypothetical protein 2800537 4172453 Patl_2299 Pseudoalteromonas atlantica T6c hypothetical protein YP_661870.1 2800292 D 342610 CDS YP_661871.1 109898616 4172454 complement(2800762..2801205) 1 NC_008228.1 PFAM: protein of unknown function, Spy-related; KEGG: cps:CPS_1751 hypothetical protein; hypothetical protein 2801205 4172454 Patl_2300 Pseudoalteromonas atlantica T6c hypothetical protein YP_661871.1 2800762 R 342610 CDS YP_661872.1 109898617 4172455 2801373..2802107 1 NC_008228.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: ngo:NGO0177 putative two-component system transcriptional response regulator; two component transcriptional regulator 2802107 4172455 Patl_2301 Pseudoalteromonas atlantica T6c two component transcriptional regulator YP_661872.1 2801373 D 342610 CDS YP_661873.1 109898618 4172456 2802110..2803462 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: ppu:PP4505 sensor histidine kinase; sensor signal transduction histidine kinase 2803462 4172456 Patl_2302 Pseudoalteromonas atlantica T6c sensor signal transduction histidine kinase YP_661873.1 2802110 D 342610 CDS YP_661874.1 109898619 4172457 complement(2803538..2804794) 1 NC_008228.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bbr:BB1107 ferredoxin reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2804794 4172457 Patl_2303 Pseudoalteromonas atlantica T6c FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_661874.1 2803538 R 342610 CDS YP_661875.1 109898620 4172458 complement(2804883..2805191) 1 NC_008228.1 PFAM: ferredoxin; KEGG: bbr:BB3144 putative ferredoxin; ferredoxin 2805191 4172458 Patl_2304 Pseudoalteromonas atlantica T6c ferredoxin YP_661875.1 2804883 R 342610 CDS YP_661876.1 109898621 4172459 complement(2805288..2806445) 1 NC_008228.1 PFAM: cytochrome P450; KEGG: mlo:mlr5876 cytochrome P450; cytochrome P450 2806445 4172459 Patl_2305 Pseudoalteromonas atlantica T6c cytochrome P450 YP_661876.1 2805288 R 342610 CDS YP_661877.1 109898622 4172460 complement(2806652..2807527) 1 NC_008228.1 PFAM: helix-turn-helix, AraC type; KEGG: vvu:VV21452 AraC-type DNA-binding domain-containing protein; AraC family transcriptional regulator 2807527 4172460 Patl_2306 Pseudoalteromonas atlantica T6c AraC family transcriptional regulator YP_661877.1 2806652 R 342610 CDS YP_661878.1 109898623 4172461 2807682..2808800 1 NC_008228.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: gka:GK2774 alcohol dehydrogenase; zinc-binding alcohol dehydrogenase 2808800 4172461 Patl_2307 Pseudoalteromonas atlantica T6c zinc-binding alcohol dehydrogenase YP_661878.1 2807682 D 342610 CDS YP_661879.1 109898624 4172462 2808814..2809626 1 NC_008228.1 PFAM: putative esterase; KEGG: bur:Bcep18194_B0523 putative esterase; putative esterase 2809626 4172462 Patl_2308 Pseudoalteromonas atlantica T6c putative esterase YP_661879.1 2808814 D 342610 CDS YP_661880.1 109898625 4172463 complement(2809739..2810389) 1 NC_008228.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: pha:PSHAa1310 signal peptidase I protein; signal peptidase I 2810389 4172463 Patl_2309 Pseudoalteromonas atlantica T6c signal peptidase I YP_661880.1 2809739 R 342610 CDS YP_661881.1 109898626 4172464 2810713..2812869 1 NC_008228.1 KEGG: ppr:PBPRB0205 hypothetical FOG: GGDEF domain; TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; diguanylate cyclase 2812869 4172464 Patl_2310 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_661881.1 2810713 D 342610 CDS YP_661882.1 109898627 4172465 2813027..2814148 1 NC_008228.1 PFAM: Alcohol dehydrogenase GroES-like; KEGG: reu:Reut_A1899 possible NADH oxidoreductase; alcohol dehydrogenase GroES-like protein 2814148 4172465 Patl_2311 Pseudoalteromonas atlantica T6c alcohol dehydrogenase GroES-like protein YP_661882.1 2813027 D 342610 CDS YP_661883.1 109898628 4172466 2814356..2815264 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: vpa:VPA1589 transcriptional regulator, LysR family; LysR family transcriptional regulator 2815264 4172466 Patl_2312 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_661883.1 2814356 D 342610 CDS YP_661884.1 109898629 4172467 complement(2815323..2816150) 1 NC_008228.1 PFAM: transcriptional regulatory protein-like; KEGG: cps:CPS_3214 putative transcriptional regulator; response regulator receiver protein 2816150 4172467 Patl_2313 Pseudoalteromonas atlantica T6c response regulator receiver protein YP_661884.1 2815323 R 342610 CDS YP_661885.1 109898630 4172468 2816775..2818733 1 NC_008228.1 KEGG: hsa:1834 dentin sialophosphoprotein; dentin sialophosphoprotein 2818733 4172468 Patl_2314 Pseudoalteromonas atlantica T6c dentin sialophosphoprotein YP_661885.1 2816775 D 342610 CDS YP_661886.1 109898631 4172469 2818815..2819162 1 NC_008228.1 KEGG: cps:CPS_3211 hypothetical protein; hypothetical protein 2819162 4172469 Patl_2315 Pseudoalteromonas atlantica T6c hypothetical protein YP_661886.1 2818815 D 342610 CDS YP_661887.1 109898632 4172470 2819182..2819853 1 NC_008228.1 PFAM: peptidase C39, bacteriocin processing; KEGG: cps:CPS_3210 peptidase, C39 family; peptidase C39, bacteriocin processing 2819853 4172470 Patl_2316 Pseudoalteromonas atlantica T6c peptidase C39, bacteriocin processing YP_661887.1 2819182 D 342610 CDS YP_661888.1 109898633 4172471 2819869..2820351 1 NC_008228.1 KEGG: cps:CPS_3209 hypothetical protein; hypothetical protein 2820351 4172471 Patl_2317 Pseudoalteromonas atlantica T6c hypothetical protein YP_661888.1 2819869 D 342610 CDS YP_661889.1 109898634 4172472 complement(2820497..2821822) 1 NC_008228.1 KEGG: cps:CPS_3207 hypothetical protein; hypothetical protein 2821822 4172472 Patl_2318 Pseudoalteromonas atlantica T6c hypothetical protein YP_661889.1 2820497 R 342610 CDS YP_661890.1 109898635 4172473 complement(2822118..2824415) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_2088 TonB-dependent receptor; TonB-dependent receptor 2824415 4172473 Patl_2319 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_661890.1 2822118 R 342610 CDS YP_661891.1 109898636 4172474 2824739..2825614 1 NC_008228.1 PFAM: putative cyclase; KEGG: mbo:Mb1744 hypothetical protein; putative cyclase 2825614 4172474 Patl_2320 Pseudoalteromonas atlantica T6c putative cyclase YP_661891.1 2824739 D 342610 CDS YP_661892.1 109898637 4172475 2825740..2826651 1 NC_008228.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: bbr:BB1500 putative 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase 2826651 4172475 Patl_2321 Pseudoalteromonas atlantica T6c 3-hydroxyacyl-CoA dehydrogenase YP_661892.1 2825740 D 342610 CDS YP_661893.1 109898638 4172476 2826655..2827587 1 NC_008228.1 PFAM: protein of unknown function DUF849; KEGG: eli:ELI_10685 hypothetical protein; hypothetical protein 2827587 4172476 Patl_2322 Pseudoalteromonas atlantica T6c hypothetical protein YP_661893.1 2826655 D 342610 CDS YP_661894.1 109898639 4172477 2827679..2828023 1 NC_008228.1 PFAM: Cupin 2, conserved barrel; KEGG: afu:AF1208 hypothetical protein; cupin 2 barrel domain-containing protein 2828023 4172477 Patl_2323 Pseudoalteromonas atlantica T6c cupin 2 barrel domain-containing protein YP_661894.1 2827679 D 342610 CDS YP_661895.1 109898640 4172478 2828023..2828823 1 NC_008228.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mbo:Mb1741 probable oxidoreductase; short-chain dehydrogenase/reductase SDR 2828823 4172478 Patl_2324 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_661895.1 2828023 D 342610 CDS YP_661896.1 109898641 4172479 2828902..2830371 1 NC_008228.1 PFAM: Na+/solute symporter; KEGG: afu:AF1205 pantothenate permease (PanF-2); Na+/solute symporter 2830371 4172479 Patl_2325 Pseudoalteromonas atlantica T6c Na+/solute symporter YP_661896.1 2828902 D 342610 CDS YP_661897.1 109898642 4172480 complement(2830702..2831475) 1 NC_008228.1 PFAM: regulatory proteins, IclR; KEGG: mbo:Mb1748 probable transcriptional regulatory protein; IclR family transcriptional regulator 2831475 4172480 Patl_2326 Pseudoalteromonas atlantica T6c IclR family transcriptional regulator YP_661897.1 2830702 R 342610 CDS YP_661898.1 109898643 4172481 complement(2831609..2832016) 1 NC_008228.1 PFAM: DoxX; KEGG: cps:CPS_3329 hypothetical protein; DoxX protein 2832016 4172481 Patl_2327 Pseudoalteromonas atlantica T6c DoxX protein YP_661898.1 2831609 R 342610 CDS YP_661899.1 109898644 4172482 2832309..2834012 1 NC_008228.1 PFAM: pseudouridine synthase; KEGG: vfi:VFA0485 ribosomal large subunit pseudouridine synthase A; pseudouridine synthase 2834012 4172482 Patl_2328 Pseudoalteromonas atlantica T6c pseudouridine synthase YP_661899.1 2832309 D 342610 CDS YP_661900.1 109898645 4172483 2834121..2835560 1 NC_008228.1 PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa0442 transport protein (MFS); major facilitator superfamily transporter 2835560 4172483 Patl_2329 Pseudoalteromonas atlantica T6c major facilitator superfamily transporter YP_661900.1 2834121 D 342610 CDS YP_661901.1 109898646 4172484 complement(2835661..2836941) 1 NC_008228.1 PFAM: helicase-like DEAD/DEAH box helicase-like; KEGG: son:SO1383 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 2836941 4172484 Patl_2330 Pseudoalteromonas atlantica T6c DEAD/DEAH box helicase YP_661901.1 2835661 R 342610 CDS YP_661902.1 109898647 4172485 complement(2837508..2838431) 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: reu:Reut_A1003 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 2838431 4172485 Patl_2331 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_661902.1 2837508 R 342610 CDS YP_661903.1 109898648 4172486 2838513..2839319 1 NC_008228.1 PFAM: class II aldolase/adducin-like; KEGG: rso:RSc1767 hypothetical protein; hypothetical protein 2839319 4172486 Patl_2332 Pseudoalteromonas atlantica T6c hypothetical protein YP_661903.1 2838513 D 342610 CDS YP_661904.1 109898649 4172487 complement(2839388..2840308) 1 NC_008228.1 KEGG: pha:PSHAa1891 hypothetical protein; hypothetical protein 2840308 4172487 Patl_2333 Pseudoalteromonas atlantica T6c hypothetical protein YP_661904.1 2839388 R 342610 CDS YP_661905.1 109898650 4172488 complement(2840532..2840918) 1 NC_008228.1 KEGG: ret:RHE_CH03726 hypothetical protein; hypothetical protein 2840918 4172488 Patl_2334 Pseudoalteromonas atlantica T6c hypothetical protein YP_661905.1 2840532 R 342610 CDS YP_661906.1 109898651 4172489 complement(2841058..2841696) 1 NC_008228.1 PFAM: metal-dependent phosphohydrolase, HD subdomain; KEGG: pha:PSHAa1148 two-component regulator with metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 2841696 4172489 Patl_2335 Pseudoalteromonas atlantica T6c metal dependent phosphohydrolase YP_661906.1 2841058 R 342610 CDS YP_661907.1 109898652 4172490 complement(2841871..2842206) 1 NC_008228.1 KEGG: pha:PSHAa1600 cold-shock DNA-binding domain; hypothetical protein 2842206 4172490 Patl_2336 Pseudoalteromonas atlantica T6c hypothetical protein YP_661907.1 2841871 R 342610 CDS YP_661908.1 109898653 4172491 complement(2842332..2843108) 1 NC_008228.1 SMART: extracellular solute-binding protein, family 3; KEGG: cps:CPS_2474 bacterial extracellular solute-binding protein, family 3; extracellular solute-binding protein 2843108 4172491 Patl_2337 Pseudoalteromonas atlantica T6c extracellular solute-binding protein YP_661908.1 2842332 R 342610 CDS YP_661909.1 109898654 4172492 complement(2843349..2845868) 1 NC_008228.1 PFAM: glycoside hydrolase, family 31; KEGG: cps:CPS_0983 glycosyl hydrolase, family 31; alpha-glucosidase 2845868 4172492 Patl_2338 Pseudoalteromonas atlantica T6c alpha-glucosidase YP_661909.1 2843349 R 342610 CDS YP_661910.1 109898655 4172493 complement(2845918..2846784) 1 NC_008228.1 PFAM: putative esterase; KEGG: pfu:PF1108 putative alpha-dextrin endo-1,6-alpha-glucosidase; putative esterase 2846784 4172493 Patl_2339 Pseudoalteromonas atlantica T6c putative esterase YP_661910.1 2845918 R 342610 CDS YP_661911.1 109898656 4172494 complement(2846832..2848784) 1 NC_008228.1 PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: ppr:PBPRB0415 putative glycosidase; alpha amylase 2848784 4172494 Patl_2340 Pseudoalteromonas atlantica T6c alpha amylase YP_661911.1 2846832 R 342610 CDS YP_661912.1 109898657 4172495 2849088..2852603 1 NC_008228.1 PFAM: Ig-like, group 2; KEGG: rba:RB3421 probable beta-agarase [precursor]; agarase 2852603 4172495 Patl_2341 Pseudoalteromonas atlantica T6c agarase YP_661912.1 2849088 D 342610 CDS YP_661913.1 109898658 4172496 2852635..2853162 1 NC_008228.1 hypothetical protein 2853162 4172496 Patl_2342 Pseudoalteromonas atlantica T6c hypothetical protein YP_661913.1 2852635 D 342610 CDS YP_661914.1 109898659 4172497 2853440..2853937 1 NC_008228.1 PFAM: GAF; KEGG: pfl:PFL_3308 diguanylate cyclase, putative; putative GAF sensor protein 2853937 4172497 Patl_2343 Pseudoalteromonas atlantica T6c putative GAF sensor protein YP_661914.1 2853440 D 342610 CDS YP_661915.1 109898660 4172498 complement(2854044..2855309) 1 NC_008228.1 PFAM: UMUC-like DNA-repair protein; KEGG: cps:CPS_2682 UmuC protein; DNA-directed DNA polymerase 2855309 4172498 Patl_2344 Pseudoalteromonas atlantica T6c DNA-directed DNA polymerase YP_661915.1 2854044 R 342610 CDS YP_661916.1 109898661 4172499 complement(2855309..2855713) 1 NC_008228.1 PFAM: peptidase S24, S26A and S26B; KEGG: son:SOA0013 umuD protein; putative prophage repressor 2855713 4172499 Patl_2345 Pseudoalteromonas atlantica T6c putative prophage repressor YP_661916.1 2855309 R 342610 CDS YP_661917.1 109898662 4172501 2856590..2856994 1 NC_008228.1 KEGG: ilo:IL1817 hypothetical protein; hypothetical protein 2856994 4172501 Patl_2347 Pseudoalteromonas atlantica T6c hypothetical protein YP_661917.1 2856590 D 342610 CDS YP_661918.1 109898663 4172502 complement(2857084..2859393) 1 NC_008228.1 KEGG: pha:PSHAa1996 conserved protein of unknown function; enzyme; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 2859393 4172502 Patl_2348 Pseudoalteromonas atlantica T6c DNA polymerase III subunit epsilon YP_661918.1 2857084 R 342610 CDS YP_661919.1 109898664 4172503 complement(2859440..2859925) 1 NC_008228.1 KEGG: noc:Noc_2695 hypothetical protein; hypothetical protein 2859925 4172503 Patl_2349 Pseudoalteromonas atlantica T6c hypothetical protein YP_661919.1 2859440 R 342610 CDS YP_661920.1 109898665 4172504 2860297..2861403 1 NC_008228.1 KEGG: hypothetical protein; hypothetical protein 2861403 4172504 Patl_2350 Pseudoalteromonas atlantica T6c hypothetical protein YP_661920.1 2860297 D 342610 CDS YP_661921.1 109898666 4172505 complement(2861567..2862541) 1 NC_008228.1 PFAM: HPP domain containing protein+B94; KEGG: tcx:Tcr_1929 HPP; HPP domain-containing protein 2862541 4172505 Patl_2351 Pseudoalteromonas atlantica T6c HPP domain-containing protein YP_661921.1 2861567 R 342610 CDS YP_661922.1 109898667 4172506 complement(2862771..2863430) 1 NC_008228.1 hypothetical protein 2863430 4172506 Patl_2352 Pseudoalteromonas atlantica T6c hypothetical protein YP_661922.1 2862771 R 342610 CDS YP_661923.1 109898668 4172507 2863774..2864739 1 NC_008228.1 KEGG: pha:PSHAb0153 hypothetical protein; hypothetical protein 2864739 4172507 Patl_2353 Pseudoalteromonas atlantica T6c hypothetical protein YP_661923.1 2863774 D 342610 CDS YP_661924.1 109898669 4172508 2864861..2865148 1 NC_008228.1 KEGG: mag:amb4351 hypothetical protein; hypothetical protein 2865148 4172508 Patl_2354 Pseudoalteromonas atlantica T6c hypothetical protein YP_661924.1 2864861 D 342610 CDS YP_661925.1 109898670 4172509 complement(2865348..2865932) 1 NC_008228.1 KEGG: hch:HCH_01554 hypothetical protein; hypothetical protein 2865932 4172509 Patl_2355 Pseudoalteromonas atlantica T6c hypothetical protein YP_661925.1 2865348 R 342610 CDS YP_661926.1 109898671 4172510 complement(2866018..2868657) 1 NC_008228.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 2868657 4172510 Patl_2356 Pseudoalteromonas atlantica T6c DNA topoisomerase I YP_661926.1 2866018 R 342610 CDS YP_661927.1 109898672 4172511 2868973..2870313 1 NC_008228.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 2870313 4172511 Patl_2357 Pseudoalteromonas atlantica T6c succinylarginine dihydrolase YP_661927.1 2868973 D 342610 CDS YP_661928.1 109898673 4172512 complement(2870436..2872619) 1 NC_008228.1 PFAM: Ig-like, group 1; KEGG: yps:YPTB3789 possible bacterial Ig-like domain (group 1); Ig-like protein 2872619 4172512 Patl_2358 Pseudoalteromonas atlantica T6c Ig-like protein YP_661928.1 2870436 R 342610 CDS YP_661929.1 109898674 4172513 2872745..2874094 1 NC_008228.1 PFAM: sodium:dicarboxylate symporter; KEGG: cps:CPS_1194 putative proton/glutamate symporter; sodium:dicarboxylate symporter 2874094 4172513 Patl_2359 Pseudoalteromonas atlantica T6c sodium:dicarboxylate symporter YP_661929.1 2872745 D 342610 CDS YP_661930.1 109898675 4172514 complement(2874212..2875447) 1 NC_008228.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: cps:CPS_3477 lipoprotein releasing system transmembrane protein LolE; LolC/E family lipoprotein releasing system, transmembrane protein 2875447 4172514 Patl_2360 Pseudoalteromonas atlantica T6c LolC/E family lipoprotein releasing system, transmembrane protein YP_661930.1 2874212 R 342610 CDS YP_661931.1 109898676 4172515 complement(2875461..2876144) 1 NC_008228.1 KEGG: ecc:c1392 lipoprotein releasing system ATP-binding protein lolD; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase; lipoprotein releasing system, ATP-binding protein 2876144 4172515 Patl_2361 Pseudoalteromonas atlantica T6c lipoprotein releasing system, ATP-binding protein YP_661931.1 2875461 R 342610 CDS YP_661932.1 109898677 4172516 complement(2876185..2877234) 1 NC_008228.1 PFAM: CBS domain containing protein protein of unknown function DUF21; KEGG: sru:SRU_0924 domain of unknown function domain protein; hypothetical protein 2877234 4172516 Patl_2362 Pseudoalteromonas atlantica T6c hypothetical protein YP_661932.1 2876185 R 342610 CDS YP_661933.1 109898678 4172520 complement(2877929..2879374) 1 NC_008228.1 KEGG: cps:CPS_2256 hypothetical protein; hypothetical protein 2879374 4172520 Patl_2363 Pseudoalteromonas atlantica T6c hypothetical protein YP_661933.1 2877929 R 342610 CDS YP_661934.1 109898679 4172521 complement(2879404..2880111) 1 NC_008228.1 KEGG: ilo:IL1693 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 2880111 4172521 Patl_2364 Pseudoalteromonas atlantica T6c DNA polymerase III subunit epsilon YP_661934.1 2879404 R 342610 CDS YP_661935.1 109898680 4172522 2880192..2880653 1 NC_008228.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 2880653 rnhA 4172522 rnhA Pseudoalteromonas atlantica T6c ribonuclease H YP_661935.1 2880192 D 342610 CDS YP_661936.1 109898681 4172523 complement(2880709..2881065) 1 NC_008228.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rba:RB3321 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 2881065 4172523 Patl_2366 Pseudoalteromonas atlantica T6c glyoxalase/bleomycin resistance protein/dioxygenase YP_661936.1 2880709 R 342610 CDS YP_661937.1 109898682 4172524 2881294..2883156 1 NC_008228.1 TIGRFAM: signal peptide peptidase SppA, 67K type signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: pha:PSHAa1409 protease IV, a signal peptide peptidase; signal peptide peptidase SppA, 67K type 2883156 4172524 Patl_2367 Pseudoalteromonas atlantica T6c signal peptide peptidase SppA, 67K type YP_661937.1 2881294 D 342610 CDS YP_661938.1 109898683 4172525 2883264..2883794 1 NC_008228.1 PFAM: protein of unknown function DUF335, SprT; SMART: Protein of unknown function SprT; KEGG: vfi:VF0438 SprT protein; hypothetical protein 2883794 4172525 Patl_2368 Pseudoalteromonas atlantica T6c hypothetical protein YP_661938.1 2883264 D 342610 CDS YP_661939.1 109898684 4172526 complement(2883791..2884237) 1 NC_008228.1 PFAM: protein of unknown function DUF412; KEGG: vvy:VV2132 hypothetical protein; hypothetical protein 2884237 4172526 Patl_2369 Pseudoalteromonas atlantica T6c hypothetical protein YP_661939.1 2883791 R 342610 CDS YP_661940.1 109898685 4172527 2884496..2885446 1 NC_008228.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pha:PSHAa1720 thioredoxin reductase, FAD/NAD(P)-binding; thioredoxin reductase 2885446 4172527 Patl_2370 Pseudoalteromonas atlantica T6c thioredoxin reductase YP_661940.1 2884496 D 342610 CDS YP_661941.1 109898686 4172528 2885498..2886202 1 NC_008228.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2886202 aat 4172528 aat Pseudoalteromonas atlantica T6c leucyl/phenylalanyl-tRNA--protein transferase YP_661941.1 2885498 D 342610 CDS YP_661942.1 109898687 4172529 2886202..2886897 1 NC_008228.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 2886897 4172529 Patl_2372 Pseudoalteromonas atlantica T6c arginyl-tRNA-protein transferase YP_661942.1 2886202 D 342610 CDS YP_661943.1 109898688 4172530 2886978..2887196 1 NC_008228.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2887196 infA 4172530 infA Pseudoalteromonas atlantica T6c translation initiation factor IF-1 YP_661943.1 2886978 D 342610 CDS YP_661944.1 109898689 4172531 complement(2887305..2889572) 1 NC_008228.1 KEGG: pha:PSHAa1724 ATP-dependent specificity subunit of ClpA-ClpP serine protease; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central region Clp, N terminal ATPase associated with various cellular activities, AAA_5 ATPase AAA-2; SMART: ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 2889572 4172531 Patl_2374 Pseudoalteromonas atlantica T6c ATP-dependent Clp protease ATP-binding protein ClpA YP_661944.1 2887305 R 342610 CDS YP_661945.1 109898690 4172532 complement(2889593..2889913) 1 NC_008228.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2889913 clpS 4172532 clpS Pseudoalteromonas atlantica T6c ATP-dependent Clp protease adaptor protein ClpS YP_661945.1 2889593 R 342610 CDS YP_661946.1 109898691 4172533 2890079..2890333 1 NC_008228.1 KEGG: ecc:c1017 cold shock-like protein cspD; TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 2890333 4172533 Patl_2376 Pseudoalteromonas atlantica T6c cold-shock DNA-binding domain-containing protein YP_661946.1 2890079 D 342610 CDS YP_661947.1 109898692 4174125 complement(2890395..2892626) 1 NC_008228.1 KEGG: eba:ebA832 isocitrate dehydrogenase isozyme 2, monomeric type, NADP-specific; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; isocitrate dehydrogenase 2892626 4174125 Patl_2377 Pseudoalteromonas atlantica T6c isocitrate dehydrogenase YP_661947.1 2890395 R 342610 CDS YP_661948.1 109898693 4174126 2892853..2893431 1 NC_008228.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: pseudouridine synthase; KEGG: vch:VC1140 pseudouridine synthase family 1 protein; pseudouridine synthase Rsu 2893431 4174126 Patl_2378 Pseudoalteromonas atlantica T6c pseudouridine synthase Rsu YP_661948.1 2892853 D 342610 CDS YP_661949.1 109898694 4174127 2893484..2894674 1 NC_008228.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2894674 mnmA 4174127 mnmA Pseudoalteromonas atlantica T6c tRNA-specific 2-thiouridylase MnmA YP_661949.1 2893484 D 342610 CDS YP_661950.1 109898695 4174128 2894674..2895333 1 NC_008228.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 2895333 4174128 Patl_2380 Pseudoalteromonas atlantica T6c hypothetical protein YP_661950.1 2894674 D 342610 CDS YP_661951.1 109898696 4174129 2895347..2896714 1 NC_008228.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2896714 4174129 Patl_2381 Pseudoalteromonas atlantica T6c adenylosuccinate lyase YP_661951.1 2895347 D 342610 CDS YP_661952.1 109898697 4174130 2896848..2898071 1 NC_008228.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: ana:all0661 adenylate cyclase; adenylate/guanylate cyclase 2898071 4174130 Patl_2382 Pseudoalteromonas atlantica T6c adenylate/guanylate cyclase YP_661952.1 2896848 D 342610 CDS YP_661953.1 109898698 4174131 2898138..2899307 1 NC_008228.1 PFAM: Cupin 4 Transcription factor jumonji; SMART: Transcription factor jumonji/aspartyl beta-hydroxylase; KEGG: stm:STM1229 putative cytoplasmic protein; cupin 4 2899307 4174131 Patl_2383 Pseudoalteromonas atlantica T6c cupin 4 YP_661953.1 2898138 D 342610 CDS YP_661954.1 109898699 4174132 complement(2899458..2900300) 1 NC_008228.1 KEGG: son:SO2711 hypothetical protein; hypothetical protein 2900300 4174132 Patl_2384 Pseudoalteromonas atlantica T6c hypothetical protein YP_661954.1 2899458 R 342610 CDS YP_661955.1 109898700 4174133 complement(2900406..2901224) 1 NC_008228.1 PFAM: response regulator receiver LytTr DNA-binding region; KEGG: ilo:IL1261 response regulator of the LytR/AlgR family; response regulator receiver protein 2901224 4174133 Patl_2385 Pseudoalteromonas atlantica T6c response regulator receiver protein YP_661955.1 2900406 R 342610 CDS YP_661956.1 109898701 4174134 complement(2901214..2902296) 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like histidine kinase internal region; KEGG: cps:CPS_2277 sensor histidine kinase; signal transduction histidine kinase LytS 2902296 4174134 Patl_2386 Pseudoalteromonas atlantica T6c signal transduction histidine kinase LytS YP_661956.1 2901214 R 342610 CDS YP_661957.1 109898702 4174135 complement(2902433..2902894) 1 NC_008228.1 PFAM: protein of unknown function DUF962; KEGG: lic:LIC11677 hypothetical protein; hypothetical protein 2902894 4174135 Patl_2387 Pseudoalteromonas atlantica T6c hypothetical protein YP_661957.1 2902433 R 342610 CDS YP_661958.1 109898703 4174136 complement(2902987..2903613) 1 NC_008228.1 PFAM: type IV pilus assembly PilZ; KEGG: ilo:IL2319 predicted glycosyltransferase; type IV pilus assembly PilZ 2903613 4174136 Patl_2388 Pseudoalteromonas atlantica T6c type IV pilus assembly PilZ YP_661958.1 2902987 R 342610 CDS YP_661959.1 109898704 4174137 2903830..2905680 1 NC_008228.1 PFAM: peptidase M61; SMART: PDZ/DHR/GLGF; KEGG: noc:Noc_1493 peptidase M61; peptidase M61 2905680 4174137 Patl_2389 Pseudoalteromonas atlantica T6c peptidase M61 YP_661959.1 2903830 D 342610 CDS YP_661960.1 109898705 4174138 2905949..2906989 1 NC_008228.1 KEGG: spo:SPBC1683.02 putative adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; adenosine deaminase 2906989 4174138 Patl_2390 Pseudoalteromonas atlantica T6c adenosine deaminase YP_661960.1 2905949 D 342610 CDS YP_661961.1 109898706 4174139 2907223..2908224 1 NC_008228.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: syn:slr1192 zinc-containing alcohol dehydrogenase family; zinc-binding alcohol dehydrogenase 2908224 4174139 Patl_2391 Pseudoalteromonas atlantica T6c zinc-binding alcohol dehydrogenase YP_661961.1 2907223 D 342610 CDS YP_661962.1 109898707 4174140 complement(2908298..2911435) 1 NC_008228.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: pha:PSHAa0305 cation efflux system protein; CzcA family heavy metal efflux protein 2911435 4174140 Patl_2392 Pseudoalteromonas atlantica T6c CzcA family heavy metal efflux protein YP_661962.1 2908298 R 342610 CDS YP_661963.1 109898708 4174141 complement(2911432..2913009) 1 NC_008228.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cps:CPS_4857 cation efflux system protein CusB; RND family efflux transporter MFP subunit 2913009 4174141 Patl_2393 Pseudoalteromonas atlantica T6c RND family efflux transporter MFP subunit YP_661963.1 2911432 R 342610 CDS YP_661964.1 109898709 4174142 complement(2913006..2914469) 1 NC_008228.1 KEGG: ilo:IL1224 outer membrane efflux protein; outer membrane efflux protein 2914469 4174142 Patl_2394 Pseudoalteromonas atlantica T6c outer membrane efflux protein YP_661964.1 2913006 R 342610 CDS YP_661965.1 109898710 4174143 complement(2914684..2915178) 1 NC_008228.1 hypothetical protein 2915178 4174143 Patl_2395 Pseudoalteromonas atlantica T6c hypothetical protein YP_661965.1 2914684 R 342610 CDS YP_661966.1 109898711 4174144 complement(2915504..2916571) 1 NC_008228.1 PFAM: sodium/hydrogen exchanger; KEGG: ftu:FTT0669 sodium/hydrogen exchanger family protein; sodium/hydrogen exchanger 2916571 4174144 Patl_2396 Pseudoalteromonas atlantica T6c sodium/hydrogen exchanger YP_661966.1 2915504 R 342610 CDS YP_661967.1 109898712 4174145 2917252..2917518 1 NC_008228.1 TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; PFAM: zinc finger, DksA/TraR C4-type; KEGG: ilo:IL0756 DnaK suppressor protein; hypothetical protein 2917518 4174145 Patl_2397 Pseudoalteromonas atlantica T6c hypothetical protein YP_661967.1 2917252 D 342610 CDS YP_661968.1 109898713 4174146 2918061..2918672 1 NC_008228.1 KEGG: pfo:Pfl_3563 hypothetical protein; hypothetical protein 2918672 4174146 Patl_2398 Pseudoalteromonas atlantica T6c hypothetical protein YP_661968.1 2918061 D 342610 CDS YP_661969.1 109898714 4174147 complement(2918743..2919714) 1 NC_008228.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bur:Bcep18194_A3790 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 2919714 4174147 Patl_2399 Pseudoalteromonas atlantica T6c nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_661969.1 2918743 R 342610 CDS YP_661970.1 109898715 4174148 2919822..2921900 1 NC_008228.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase FAD-dependent pyridine nucleotide-disulphide oxidoreductase HI0933-like protein; KEGG: cps:CPS_0925 2,4-dienoyl-CoA reductase; NADH:flavin oxidoreductase 2921900 4174148 Patl_2400 Pseudoalteromonas atlantica T6c NADH:flavin oxidoreductase YP_661970.1 2919822 D 342610 CDS YP_661971.1 109898716 4174149 complement(2922027..2923004) 1 NC_008228.1 hypothetical protein 2923004 4174149 Patl_2401 Pseudoalteromonas atlantica T6c hypothetical protein YP_661971.1 2922027 R 342610 CDS YP_661972.1 109898717 4174150 2923229..2925403 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_4213 putative ferric aerobactin receptor; TonB-dependent receptor, plug 2925403 4174150 Patl_2402 Pseudoalteromonas atlantica T6c TonB-dependent receptor, plug YP_661972.1 2923229 D 342610 CDS YP_661973.1 109898718 4174151 2925493..2926674 1 NC_008228.1 PFAM: PepSY-associated TM helix; KEGG: pha:PSHAb0287 putative uncharacterized iron-regulated membrane protein; PepSY-associated TM helix-containing protein 2926674 4174151 Patl_2403 Pseudoalteromonas atlantica T6c PepSY-associated TM helix-containing protein YP_661973.1 2925493 D 342610 CDS YP_661974.1 109898719 4174152 2926936..2927400 1 NC_008228.1 KEGG: eli:ELI_05360 general stress protein; general stress protein 2927400 4174152 Patl_2404 Pseudoalteromonas atlantica T6c general stress protein YP_661974.1 2926936 D 342610 CDS YP_661975.1 109898720 4174153 2927780..2929111 1 NC_008228.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO3694 HlyD family secretion protein; RND family efflux transporter MFP subunit 2929111 4174153 Patl_2405 Pseudoalteromonas atlantica T6c RND family efflux transporter MFP subunit YP_661975.1 2927780 D 342610 CDS YP_661976.1 109898721 4174154 2929306..2930049 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: xcb:XC_3665 ABC transporter ATP-binding protein; ABC transporter-like protein 2930049 4174154 Patl_2406 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_661976.1 2929306 D 342610 CDS YP_661977.1 109898722 4174155 2930059..2931375 1 NC_008228.1 PFAM: protein of unknown function DUF214; KEGG: xcb:XC_3666 ABC transporter ATP-binding protein; hypothetical protein 2931375 4174155 Patl_2407 Pseudoalteromonas atlantica T6c hypothetical protein YP_661977.1 2930059 D 342610 CDS YP_661978.1 109898723 4174156 2931383..2932636 1 NC_008228.1 PFAM: protein of unknown function DUF214; KEGG: xcb:XC_3667 ABC transporter permease; hypothetical protein 2932636 4174156 Patl_2408 Pseudoalteromonas atlantica T6c hypothetical protein YP_661978.1 2931383 D 342610 CDS YP_661979.1 109898724 4174158 2932887..2933438 1 NC_008228.1 PFAM: protein of unknown function UPF0016; KEGG: pha:PSHAb0280 hypothetical protein; hypothetical protein 2933438 4174158 Patl_2409 Pseudoalteromonas atlantica T6c hypothetical protein YP_661979.1 2932887 D 342610 CDS YP_661980.1 109898725 4174159 2933657..2934028 1 NC_008228.1 PFAM: glutaredoxin; KEGG: pae:PA1741 hypothetical protein; glutaredoxin 2934028 4174159 Patl_2410 Pseudoalteromonas atlantica T6c glutaredoxin YP_661980.1 2933657 D 342610 CDS YP_661981.1 109898726 4174160 2934165..2934608 1 NC_008228.1 KEGG: cps:CPS_3134 hypothetical protein; hypothetical protein 2934608 4174160 Patl_2411 Pseudoalteromonas atlantica T6c hypothetical protein YP_661981.1 2934165 D 342610 CDS YP_661982.1 109898727 4174161 complement(2934804..2935541) 1 NC_008228.1 PFAM: protein of unknown function DUF541; KEGG: dps:DP0874 hypothetical protein; hypothetical protein 2935541 4174161 Patl_2412 Pseudoalteromonas atlantica T6c hypothetical protein YP_661982.1 2934804 R 342610 CDS YP_661983.1 109898728 4174162 complement(2935548..2935745) 1 NC_008228.1 KEGG: bcl:ABC1618 hypothetical protein; hypothetical protein 2935745 4174162 Patl_2413 Pseudoalteromonas atlantica T6c hypothetical protein YP_661983.1 2935548 R 342610 CDS YP_661984.1 109898729 4174163 complement(2935998..2937230) 1 NC_008228.1 KEGG: cps:CPS_3313 putative lipoprotein; putative lipoprotein 2937230 4174163 Patl_2414 Pseudoalteromonas atlantica T6c putative lipoprotein YP_661984.1 2935998 R 342610 CDS YP_661985.1 109898730 4174164 complement(2937424..2938278) 1 NC_008228.1 KEGG: tcx:Tcr_1155 nitrate transport ATP-binding subunits C and D; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: ATPase; nitrate ABC transporter ATPases C and D 2938278 4174164 Patl_2415 Pseudoalteromonas atlantica T6c nitrate ABC transporter ATPases C and D YP_661985.1 2937424 R 342610 CDS YP_661986.1 109898731 4174165 complement(2938361..2939350) 1 NC_008228.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_06707 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; binding-protein-dependent transport system inner membrane protein 2939350 4174165 Patl_2416 Pseudoalteromonas atlantica T6c binding-protein-dependent transport system inner membrane protein YP_661986.1 2938361 R 342610 CDS YP_661987.1 109898732 4174166 complement(2939403..2940803) 1 NC_008228.1 KEGG: vpa:VPA1058 putative nitrate transport protein; putative nitrate transport protein 2940803 4174166 Patl_2417 Pseudoalteromonas atlantica T6c putative nitrate transport protein YP_661987.1 2939403 R 342610 CDS YP_661988.1 109898733 4174167 complement(2941290..2943002) 1 NC_008228.1 PFAM: protein kinase protein phosphatase 2C-like; SMART: Serine/threonine protein kinase; KEGG: cps:CPS_4949 serine/threonine protein kinase; serine/threonine protein kinase 2943002 4174167 Patl_2418 Pseudoalteromonas atlantica T6c serine/threonine protein kinase YP_661988.1 2941290 R 342610 CDS YP_661989.1 109898734 4174168 complement(2943043..2944509) 1 NC_008228.1 PFAM: major facilitator superfamily MFS_1; KEGG: ppr:PBPRA2521 hypothetical nitrate transporter; major facilitator superfamily transporter 2944509 4174168 Patl_2419 Pseudoalteromonas atlantica T6c major facilitator superfamily transporter YP_661989.1 2943043 R 342610 CDS YP_661990.1 109898735 4174169 complement(2945062..2946078) 1 NC_008228.1 KEGG: hch:HCH_01503 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; adenosine deaminase 2946078 4174169 Patl_2420 Pseudoalteromonas atlantica T6c adenosine deaminase YP_661990.1 2945062 R 342610 CDS YP_661991.1 109898736 4174170 2946668..2947999 1 NC_008228.1 PFAM: Xanthine/uracil/vitamin C permease sulphate transporter; KEGG: mja:MJ0326 hypothetical protein; xanthine/uracil/vitamin C permease 2947999 4174170 Patl_2421 Pseudoalteromonas atlantica T6c xanthine/uracil/vitamin C permease YP_661991.1 2946668 D 342610 CDS YP_661992.1 109898737 4174171 complement(2948154..2949059) 1 NC_008228.1 PFAM: polysaccharide deacetylase; KEGG: pae:PA1517 hypothetical protein; polysaccharide deacetylase 2949059 4174171 Patl_2422 Pseudoalteromonas atlantica T6c polysaccharide deacetylase YP_661992.1 2948154 R 342610 CDS YP_661993.1 109898738 4174172 complement(2949073..2949717) 1 NC_008228.1 PFAM: regulatory protein, TetR Tetracycline transcriptional regulator YcdC-like-like; KEGG: hch:HCH_01108 transcriptional regulator; TetR family transcriptional regulator 2949717 4174172 Patl_2423 Pseudoalteromonas atlantica T6c TetR family transcriptional regulator YP_661993.1 2949073 R 342610 CDS YP_661994.1 109898739 4174173 2950031..2951473 1 NC_008228.1 PFAM: ferredoxin molybdopterin dehydrogenase, FAD-binding [2Fe-2S]-binding CO dehydrogenase flavoprotein-like; KEGG: ppr:PBPRA2243 putative xanthine dehydrogenase, XdhA subunit; molybdopterin dehydrogenase 2951473 4174173 Patl_2424 Pseudoalteromonas atlantica T6c molybdopterin dehydrogenase YP_661994.1 2950031 D 342610 CDS YP_661995.1 109898740 4174174 2951572..2953926 1 NC_008228.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: cps:CPS_4865 xanthine dehydrogenase, molybdopterin binding subunit; xanthine dehydrogenase 2953926 4174174 Patl_2425 Pseudoalteromonas atlantica T6c xanthine dehydrogenase YP_661995.1 2951572 D 342610 CDS YP_661996.1 109898741 4174175 2953928..2954857 1 NC_008228.1 PFAM: protein of unknown function DUF182; KEGG: cps:CPS_4866 putative xanthine dehydrogenase accessory protein XdhC; hypothetical protein 2954857 4174175 Patl_2426 Pseudoalteromonas atlantica T6c hypothetical protein YP_661996.1 2953928 D 342610 CDS YP_661997.1 109898742 4174176 2954944..2955363 1 NC_008228.1 KEGG: hch:HCH_01094 hypothetical protein; hypothetical protein 2955363 4174176 Patl_2427 Pseudoalteromonas atlantica T6c hypothetical protein YP_661997.1 2954944 D 342610 CDS YP_661998.1 109898743 4174177 2955356..2955688 1 NC_008228.1 PFAM: Transthyretin; KEGG: sme:SMb21285 conserved hypothetical protein, transthyretin-like protein; transthyretin 2955688 4174177 Patl_2428 Pseudoalteromonas atlantica T6c transthyretin YP_661998.1 2955356 D 342610 CDS YP_661999.1 109898744 4174178 2955705..2957000 1 NC_008228.1 Catalyzes the deamination of guanine; guanine deaminase 2957000 4174178 Patl_2429 Pseudoalteromonas atlantica T6c guanine deaminase YP_661999.1 2955705 D 342610 CDS YP_662000.1 109898745 4174179 2957041..2958255 1 NC_008228.1 PFAM: protein of unknown function DUF989; KEGG: hch:HCH_01090 predicted membrane protein; hypothetical protein 2958255 4174179 Patl_2430 Pseudoalteromonas atlantica T6c hypothetical protein YP_662000.1 2957041 D 342610 CDS YP_662001.1 109898746 4174180 complement(2958476..2959096) 1 NC_008228.1 PFAM: Negative transcriptional regulator; KEGG: bha:BH0412 transcriptional repressor of sporulation and degradative enzymes production; negative transcriptional regulator 2959096 4174180 Patl_2431 Pseudoalteromonas atlantica T6c negative transcriptional regulator YP_662001.1 2958476 R 342610 CDS YP_662002.1 109898747 4174181 complement(2959421..2959798) 1 NC_008228.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ppr:PBPRB0453 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 2959798 4174181 Patl_2432 Pseudoalteromonas atlantica T6c glyoxalase/bleomycin resistance protein/dioxygenase YP_662002.1 2959421 R 342610 CDS YP_662003.1 109898748 4174182 complement(2960019..2961023) 1 NC_008228.1 KEGG: rpb:RPB_3706 hypothetical protein; hypothetical protein 2961023 4174182 Patl_2433 Pseudoalteromonas atlantica T6c hypothetical protein YP_662003.1 2960019 R 342610 CDS YP_662004.1 109898749 4174183 complement(2961025..2962302) 1 NC_008228.1 PFAM: protein of unknown function DUF323; KEGG: rsp:RSP_3075 hypothetical protein; hypothetical protein 2962302 4174183 Patl_2434 Pseudoalteromonas atlantica T6c hypothetical protein YP_662004.1 2961025 R 342610 CDS YP_662005.1 109898750 4174184 complement(2962400..2963248) 1 NC_008228.1 PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase NmrA-like; KEGG: rba:RB4982 conserved hypothetical protein-putative oxidoreductase; 3-beta hydroxysteroid dehydrogenase/isomerase 2963248 4174184 Patl_2435 Pseudoalteromonas atlantica T6c 3-beta hydroxysteroid dehydrogenase/isomerase YP_662005.1 2962400 R 342610 CDS YP_662006.1 109898751 4174185 complement(2963432..2963677) 1 NC_008228.1 KEGG: dps:DP0735 hypothetical protein; hypothetical protein 2963677 4174185 Patl_2436 Pseudoalteromonas atlantica T6c hypothetical protein YP_662006.1 2963432 R 342610 CDS YP_662007.1 109898752 4174186 complement(2964028..2964276) 1 NC_008228.1 KEGG: vfi:VFA0619 hypothetical protein; hypothetical protein 2964276 4174186 Patl_2437 Pseudoalteromonas atlantica T6c hypothetical protein YP_662007.1 2964028 R 342610 CDS YP_662008.1 109898753 4174187 complement(2964439..2965815) 1 NC_008228.1 PFAM: helicase-like DEAD/DEAH box helicase-like; KEGG: dps:DP1413 similar to ATP-dependent RNA helicase; DEAD/DEAH box helicase 2965815 4174187 Patl_2438 Pseudoalteromonas atlantica T6c DEAD/DEAH box helicase YP_662008.1 2964439 R 342610 CDS YP_662009.1 109898754 4174188 complement(2965991..2966416) 1 NC_008228.1 KEGG: ppr:PBPRB1217 putative TonB2 protein; hypothetical protein 2966416 4174188 Patl_2439 Pseudoalteromonas atlantica T6c hypothetical protein YP_662009.1 2965991 R 342610 CDS YP_662010.1 109898755 4174189 2966748..2967575 1 NC_008228.1 hypothetical protein 2967575 4174189 Patl_2440 Pseudoalteromonas atlantica T6c hypothetical protein YP_662010.1 2966748 D 342610 CDS YP_662011.1 109898756 4174190 2967634..2968848 1 NC_008228.1 hypothetical protein 2968848 4174190 Patl_2441 Pseudoalteromonas atlantica T6c hypothetical protein YP_662011.1 2967634 D 342610 CDS YP_662012.1 109898757 4174191 2968845..2970503 1 NC_008228.1 KEGG: bja:bll1583 hypothetical protein; hypothetical protein 2970503 4174191 Patl_2442 Pseudoalteromonas atlantica T6c hypothetical protein YP_662012.1 2968845 D 342610 CDS YP_662013.1 109898758 4174192 2970557..2971168 1 NC_008228.1 KEGG: pha:PSHAa2889 secreted protein; secreted protein 2971168 4174192 Patl_2443 Pseudoalteromonas atlantica T6c secreted protein YP_662013.1 2970557 D 342610 CDS YP_662014.1 109898759 4174193 2971923..2972333 1 NC_008228.1 hypothetical protein 2972333 4174193 Patl_2444 Pseudoalteromonas atlantica T6c hypothetical protein YP_662014.1 2971923 D 342610 CDS YP_662015.1 109898760 4174194 complement(2972541..2974244) 1 NC_008228.1 PFAM: protein of unknown function UPF0061; KEGG: pmt:PMT1392 conserved hypotheical protein; hypothetical protein 2974244 4174194 Patl_2445 Pseudoalteromonas atlantica T6c hypothetical protein YP_662015.1 2972541 R 342610 CDS YP_662016.1 109898761 4174195 complement(2974682..2975146) 1 NC_008228.1 KEGG: vch:VCA0237 hypothetical protein; hypothetical protein 2975146 4174195 Patl_2446 Pseudoalteromonas atlantica T6c hypothetical protein YP_662016.1 2974682 R 342610 CDS YP_662017.1 109898762 4174196 complement(2975744..2976064) 1 NC_008228.1 hypothetical protein 2976064 4174196 Patl_2447 Pseudoalteromonas atlantica T6c hypothetical protein YP_662017.1 2975744 R 342610 CDS YP_662018.1 109898763 4174200 complement(2977132..2977704) 1 NC_008228.1 KEGG: pfl:PFL_3561 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2977704 4174200 Patl_2448 Pseudoalteromonas atlantica T6c CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_662018.1 2977132 R 342610 CDS YP_662019.1 109898764 4174201 complement(2977774..2979600) 1 NC_008228.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2979600 uvrC 4174201 uvrC Pseudoalteromonas atlantica T6c excinuclease ABC subunit C YP_662019.1 2977774 R 342610 CDS YP_662020.1 109898765 4174202 complement(2979604..2980248) 1 NC_008228.1 PFAM: regulatory protein, LuxR response regulator receiver; KEGG: vfi:VF1627 response regulator; two component LuxR family transcriptional regulator 2980248 4174202 Patl_2450 Pseudoalteromonas atlantica T6c two component LuxR family transcriptional regulator YP_662020.1 2979604 R 342610 CDS YP_662021.1 109898766 4174205 2982284..2982952 1 NC_008228.1 PFAM: protein of unknown function UPF0005; KEGG: cps:CPS_2350 putative membrane protein; hypothetical protein 2982952 4174205 Patl_2451 Pseudoalteromonas atlantica T6c hypothetical protein YP_662021.1 2982284 D 342610 CDS YP_662022.1 109898767 4174206 2983028..2983417 1 NC_008228.1 PFAM: DsrE-like protein; KEGG: plu:plu0426 putative uncharacterized protein involved in oxidation of intracellular sulfur; DsrE-like protein 2983417 4174206 Patl_2452 Pseudoalteromonas atlantica T6c DsrE-like protein YP_662022.1 2983028 D 342610 CDS YP_662023.1 109898768 4174207 2983420..2983776 1 NC_008228.1 PFAM: DsrE-like protein; KEGG: ppr:PBPRA0311 putative uncharacterized protein involved in oxidation of intracellular sulfur; DsrE-like protein 2983776 4174207 Patl_2453 Pseudoalteromonas atlantica T6c DsrE-like protein YP_662023.1 2983420 D 342610 CDS YP_662024.1 109898769 4174208 2983777..2984091 1 NC_008228.1 KEGG: pfl:PFL_3871 DsrH family protein; DsrH family protein 2984091 4174208 Patl_2454 Pseudoalteromonas atlantica T6c DsrH family protein YP_662024.1 2983777 D 342610 CDS YP_662025.1 109898770 4174209 2984169..2984513 1 NC_008228.1 PFAM: DsrC-like protein; KEGG: ppr:PBPRA2191 putative sulfite reductase; DsrC-like protein 2984513 4174209 Patl_2455 Pseudoalteromonas atlantica T6c DsrC-like protein YP_662025.1 2984169 D 342610 CDS YP_662026.1 109898771 4174210 complement(2984605..2985903) 1 NC_008228.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2985903 4174210 Patl_2456 Pseudoalteromonas atlantica T6c seryl-tRNA synthetase YP_662026.1 2984605 R 342610 CDS YP_662027.1 109898772 4174211 complement(2985914..2986297) 1 NC_008228.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: cps:CPS_2756 CrcB protein; CrcB protein 2986297 4174211 Patl_2457 Pseudoalteromonas atlantica T6c CrcB protein YP_662027.1 2985914 R 342610 CDS YP_662028.1 109898773 4174212 complement(2986298..2987635) 1 NC_008228.1 PFAM: AAA ATPase, central region; SMART: ATPase; KEGG: vfi:VF0907 ATPase, AAA family; recombination factor protein RarA 2987635 4174212 Patl_2458 Pseudoalteromonas atlantica T6c recombination factor protein RarA YP_662028.1 2986298 R 342610 CDS YP_662029.1 109898774 4174213 complement(2987635..2988276) 1 NC_008228.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: ilo:IL0666 outer membrane lipoprotein-sorting protein; outer membrane lipoprotein carrier protein LolA 2988276 4174213 Patl_2459 Pseudoalteromonas atlantica T6c outer membrane lipoprotein carrier protein LolA YP_662029.1 2987635 R 342610 CDS YP_662030.1 109898775 4174214 complement(2988301..2990814) 1 NC_008228.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: cps:CPS_2759 cell division protein FtsK; cell division protein FtsK 2990814 4174214 Patl_2460 Pseudoalteromonas atlantica T6c cell division protein FtsK YP_662030.1 2988301 R 342610 CDS YP_662031.1 109898776 4174215 complement(2990939..2991424) 1 NC_008228.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 2991424 4174215 Patl_2461 Pseudoalteromonas atlantica T6c leucine-responsive transcriptional regulator YP_662031.1 2990939 R 342610 CDS YP_662032.1 109898777 4174216 2991575..2992705 1 NC_008228.1 TIGRFAM: alanine dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase alanine dehydrogenase/PNT-like; KEGG: ilo:IL0669 alanine dehydrogenase; alanine dehydrogenase 2992705 4174216 Patl_2462 Pseudoalteromonas atlantica T6c alanine dehydrogenase YP_662032.1 2991575 D 342610 CDS YP_662033.1 109898778 4174217 complement(2992813..2993508) 1 NC_008228.1 KEGG: vvu:VV12977 orotidine-5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 2993508 4174217 Patl_2463 Pseudoalteromonas atlantica T6c orotidine 5'-phosphate decarboxylase YP_662033.1 2992813 R 342610 CDS YP_662034.1 109898779 4174218 complement(2993515..2994684) 1 NC_008228.1 SMART: Tetratricopeptide region; KEGG: vfi:VF1756 tetratricopeptide repeat family protein; hypothetical protein 2994684 4174218 Patl_2464 Pseudoalteromonas atlantica T6c hypothetical protein YP_662034.1 2993515 R 342610 CDS YP_662035.1 109898780 4174219 complement(2995156..2995446) 1 NC_008228.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 2995446 ihfB 4174219 ihfB Pseudoalteromonas atlantica T6c integration host factor subunit beta YP_662035.1 2995156 R 342610 CDS YP_662036.2 162382312 4174220 complement(2995517..2997190) 1 NC_008228.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2997190 rpsA 4174220 rpsA Pseudoalteromonas atlantica T6c 30S ribosomal protein S1 YP_662036.2 2995517 R 342610 CDS YP_662037.1 109898782 4174221 complement(2997314..2997991) 1 NC_008228.1 KEGG: cps:CPS_2334 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; cytidylate kinase 2997991 4174221 Patl_2467 Pseudoalteromonas atlantica T6c cytidylate kinase YP_662037.1 2997314 R 342610 CDS YP_662038.1 109898783 4174222 complement(2998117..2999406) 1 NC_008228.1 TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: ppr:PBPRA2452 putative 3-phosphoshikimate 1-carboxyvinyltransferase; 3-phosphoshikimate 1-carboxyvinyltransferase 2999406 4174222 Patl_2468 Pseudoalteromonas atlantica T6c 3-phosphoshikimate 1-carboxyvinyltransferase YP_662038.1 2998117 R 342610 CDS YP_662039.1 109898784 4174223 complement(2999408..3000493) 1 NC_008228.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 3000493 4174223 Patl_2469 Pseudoalteromonas atlantica T6c phosphoserine aminotransferase YP_662039.1 2999408 R 342610 CDS YP_662040.1 109898785 4174224 complement(3000593..3003286) 1 NC_008228.1 TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A DNA gyrase C-terminal repeat, beta-propeller; KEGG: cps:CPS_2331 DNA gyrase, A subunit; DNA gyrase subunit A 3003286 4174224 Patl_2470 Pseudoalteromonas atlantica T6c DNA gyrase subunit A YP_662040.1 3000593 R 342610 CDS YP_662041.1 109898786 4174225 3003525..3004286 1 NC_008228.1 KEGG: eca:ECA1200 3-demethylubiquinone-9 3-methyltransferase; TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: Methyltransferase type 11 Methyltransferase type 12; ubiquinone biosynthesis O-methyltransferase 3004286 4174225 Patl_2471 Pseudoalteromonas atlantica T6c ubiquinone biosynthesis O-methyltransferase YP_662041.1 3003525 D 342610 CDS YP_662042.1 109898787 4174226 3004288..3004944 1 NC_008228.1 KEGG: ilo:IL1362 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase HAD-superfamily hydrolase, subfamily IA, variant 3 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; phosphoglycolate phosphatase 3004944 4174226 Patl_2472 Pseudoalteromonas atlantica T6c phosphoglycolate phosphatase YP_662042.1 3004288 D 342610 CDS YP_662043.1 109898788 4174227 3005327..3007642 1 NC_008228.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 3007642 4174227 Patl_2473 Pseudoalteromonas atlantica T6c ribonucleotide-diphosphate reductase subunit alpha YP_662043.1 3005327 D 342610 CDS YP_662044.1 109898789 4174228 3007708..3008838 1 NC_008228.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 3008838 nrdB 4174228 nrdB Pseudoalteromonas atlantica T6c ribonucleotide-diphosphate reductase subunit beta YP_662044.1 3007708 D 342610 CDS YP_662045.1 109898790 4174229 3008838..3009110 1 NC_008228.1 PFAM: ferredoxin; KEGG: sgl:SG1586 hypothetical protein; ferredoxin 3009110 4174229 Patl_2475 Pseudoalteromonas atlantica T6c ferredoxin YP_662045.1 3008838 D 342610 CDS YP_662046.1 109898791 4174230 complement(3009242..3010345) 1 NC_008228.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 3010345 4174230 Patl_2476 Pseudoalteromonas atlantica T6c phosphoribosylaminoimidazolesuccinocarboxamide synthase YP_662046.1 3009242 R 342610 CDS YP_662047.1 109898792 4174231 complement(3010424..3011530) 1 NC_008228.1 PFAM: NlpBDapX lipoprotein; KEGG: son:SO1880 lipoprotein-34 NlpB; NlpBDapX lipoprotein 3011530 4174231 Patl_2477 Pseudoalteromonas atlantica T6c NlpBDapX lipoprotein YP_662047.1 3010424 R 342610 CDS YP_662048.1 109898793 4174232 complement(3011540..3012421) 1 NC_008228.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: msu:MS0265 dihydrodipicolinate synthase/N-acetylneuraminate lyase; dihydrodipicolinate synthase 3012421 4174232 Patl_2478 Pseudoalteromonas atlantica T6c dihydrodipicolinate synthase YP_662048.1 3011540 R 342610 CDS YP_662049.1 109898794 4174233 3012583..3013110 1 NC_008228.1 KEGG: cps:CPS_3185 glycine cleavage system transcriptional repressor; glycine cleavage system transcriptional repressor 3013110 4174233 Patl_2479 Pseudoalteromonas atlantica T6c glycine cleavage system transcriptional repressor YP_662049.1 3012583 D 342610 CDS YP_662050.1 109898795 4174234 3013167..3013631 1 NC_008228.1 bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 3013631 bcp 4174234 bcp Pseudoalteromonas atlantica T6c thioredoxin-dependent thiol peroxidase YP_662050.1 3013167 D 342610 CDS YP_662051.1 109898796 4174235 complement(3013697..3014767) 1 NC_008228.1 PFAM: protein of unknown function UPF0118; KEGG: vfi:VF1921 transporter; hypothetical protein 3014767 4174235 Patl_2481 Pseudoalteromonas atlantica T6c hypothetical protein YP_662051.1 3013697 R 342610 CDS YP_662052.1 109898797 4174236 3015105..3016571 1 NC_008228.1 PFAM: peptidase M48, Ste24p; KEGG: cps:CPS_3190 hypothetical protein; peptidase M48, Ste24p 3016571 4174236 Patl_2482 Pseudoalteromonas atlantica T6c peptidase M48, Ste24p YP_662052.1 3015105 D 342610 CDS YP_662053.1 109898798 4174237 complement(3016557..3017027) 1 NC_008228.1 PFAM: Redoxin; KEGG: ilo:IL1464 thioredoxin related protein; redoxin 3017027 4174237 Patl_2483 Pseudoalteromonas atlantica T6c redoxin YP_662053.1 3016557 R 342610 CDS YP_662054.1 109898799 4174238 3017106..3017477 1 NC_008228.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: hch:HCH_01858 arsenate reductase; arsenate reductase 3017477 4174238 Patl_2484 Pseudoalteromonas atlantica T6c arsenate reductase YP_662054.1 3017106 D 342610 CDS YP_662055.1 109898800 4174239 3017474..3018070 1 NC_008228.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: rso:RSc1558 probable TRP repressor binding protein; flavodoxin/nitric oxide synthase 3018070 4174239 Patl_2485 Pseudoalteromonas atlantica T6c flavodoxin/nitric oxide synthase YP_662055.1 3017474 D 342610 CDS YP_662056.1 109898801 4174240 3018092..3018520 1 NC_008228.1 KEGG: vfi:VF1924 hypothetical protein; hypothetical protein 3018520 4174240 Patl_2486 Pseudoalteromonas atlantica T6c hypothetical protein YP_662056.1 3018092 D 342610 CDS YP_662057.1 109898802 4174241 complement(3018517..3019230) 1 NC_008228.1 PFAM: Chromosomal replication initiator, DnaA; KEGG: pmu:PM0017 hypothetical HI1225; chromosomal replication initiator DnaA 3019230 4174241 Patl_2487 Pseudoalteromonas atlantica T6c chromosomal replication initiator DnaA YP_662057.1 3018517 R 342610 CDS YP_662058.1 109898803 4174242 complement(3019230..3020342) 1 NC_008228.1 KEGG: pha:PSHAa1906 hypothetical protein; hypothetical protein 3020342 4174242 Patl_2488 Pseudoalteromonas atlantica T6c hypothetical protein YP_662058.1 3019230 R 342610 CDS YP_662059.1 109898804 4174243 3020529..3021566 1 NC_008228.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 3021566 4174243 Patl_2489 Pseudoalteromonas atlantica T6c phosphoribosylaminoimidazole synthetase YP_662059.1 3020529 D 342610 CDS YP_662060.1 109898805 4174244 3021566..3022222 1 NC_008228.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase-like; KEGG: cps:CPS_3197 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase 3022222 4174244 Patl_2490 Pseudoalteromonas atlantica T6c phosphoribosylglycinamide formyltransferase YP_662060.1 3021566 D 342610 CDS YP_662061.1 109898806 4174245 3022236..3022907 1 NC_008228.1 KEGG: pha:PSHAa1949 hypothetical protein; hypothetical protein 3022907 4174245 Patl_2491 Pseudoalteromonas atlantica T6c hypothetical protein YP_662061.1 3022236 D 342610 CDS YP_662062.1 109898807 4174246 3023111..3025576 1 NC_008228.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 3025576 fadE 4174246 fadE Pseudoalteromonas atlantica T6c acyl-CoA dehydrogenase YP_662062.1 3023111 D 342610 CDS YP_662063.1 109898808 4174247 complement(3025779..3026075) 1 NC_008228.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 3026075 ihfA 4174247 ihfA Pseudoalteromonas atlantica T6c integration host factor subunit alpha YP_662063.1 3025779 R 342610 CDS YP_662064.1 109898809 4174248 complement(3026081..3028468) 1 NC_008228.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 3028468 pheT 4174248 pheT Pseudoalteromonas atlantica T6c phenylalanyl-tRNA synthetase subunit beta YP_662064.1 3026081 R 342610 CDS YP_662065.1 109898810 4174249 complement(3028481..3029461) 1 NC_008228.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 3029461 pheS 4174249 pheS Pseudoalteromonas atlantica T6c phenylalanyl-tRNA synthetase subunit alpha YP_662065.1 3028481 R 342610 CDS YP_662066.1 109898811 4174250 complement(3029759..3030115) 1 NC_008228.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 3030115 rplT 4174250 rplT Pseudoalteromonas atlantica T6c 50S ribosomal protein L20 YP_662066.1 3029759 R 342610 CDS YP_662067.1 109898812 4174251 complement(3030131..3030328) 1 NC_008228.1 PFAM: ribosomal protein L35; KEGG: tcx:Tcr_1665 ribosomal protein L35; 50S ribosomal protein L35 3030328 rpmI 4174251 rpmI Pseudoalteromonas atlantica T6c 50S ribosomal protein L35 YP_662067.1 3030131 R 342610 CDS YP_662068.1 109898813 4174252 complement(3030446..3030910) 1 NC_008228.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: ilo:IL1398 translation initiation factor 3; translation initiation factor IF-3 3030910 4174252 Patl_2498 Pseudoalteromonas atlantica T6c translation initiation factor IF-3 YP_662068.1 3030446 R 342610 CDS YP_662069.1 109898814 4174253 complement(3031009..3032925) 1 NC_008228.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 3032925 4174253 Patl_2499 Pseudoalteromonas atlantica T6c threonyl-tRNA synthetase YP_662069.1 3031009 R 342610 CDS YP_662070.1 109898815 4174254 3033089..3033736 1 NC_008228.1 KEGG: vvy:VVA0553 hypothetical protein; hypothetical protein 3033736 4174254 Patl_2500 Pseudoalteromonas atlantica T6c hypothetical protein YP_662070.1 3033089 D 342610 CDS YP_662071.1 109898816 4174255 3033865..3034608 1 NC_008228.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mca:MCA2986 pteridine reductase; short-chain dehydrogenase/reductase SDR 3034608 4174255 Patl_2501 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_662071.1 3033865 D 342610 CDS YP_662072.1 109898817 4174256 3034618..3035658 1 NC_008228.1 KEGG: ppr:PBPRA1486 conserved hypothetical protein; hypothetical protein 3035658 4174256 Patl_2502 Pseudoalteromonas atlantica T6c hypothetical protein YP_662072.1 3034618 D 342610 CDS YP_662073.1 109898818 4174257 complement(3035655..3036410) 1 NC_008228.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 3036410 4174257 Patl_2503 Pseudoalteromonas atlantica T6c DNA polymerase III subunit epsilon YP_662073.1 3035655 R 342610 CDS YP_662074.1 109898819 4174258 complement(3036427..3038313) 1 NC_008228.1 PFAM: cyclic nucleotide-binding CBS domain containing protein protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: ilo:IL1419 signal-transduction protein; cyclic nucleotide-binding protein 3038313 4174258 Patl_2504 Pseudoalteromonas atlantica T6c cyclic nucleotide-binding protein YP_662074.1 3036427 R 342610 CDS YP_662075.1 109898820 4174259 complement(3038444..3040069) 1 NC_008228.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: ilo:IL1418 choline-glycine betaine transporter; choline/carnitine/betaine transporter 3040069 4174259 Patl_2505 Pseudoalteromonas atlantica T6c choline/carnitine/betaine transporter YP_662075.1 3038444 R 342610 CDS YP_662076.1 109898821 4174260 complement(3040226..3041578) 1 NC_008228.1 KEGG: pha:PSHAa2968 hypothetical protein; hypothetical protein 3041578 4174260 Patl_2506 Pseudoalteromonas atlantica T6c hypothetical protein YP_662076.1 3040226 R 342610 CDS YP_662077.1 109898822 4174262 3042922..3043971 1 NC_008228.1 KEGG: pha:PSHAb0546 hypothetical protein; hypothetical protein 3043971 4174262 Patl_2507 Pseudoalteromonas atlantica T6c hypothetical protein YP_662077.1 3042922 D 342610 CDS YP_662078.1 109898823 4174263 3044463..3044846 1 NC_008228.1 KEGG: son:SO2239 hypothetical protein; hypothetical protein 3044846 4174263 Patl_2508 Pseudoalteromonas atlantica T6c hypothetical protein YP_662078.1 3044463 D 342610 CDS YP_662079.1 109898824 4174264 3044851..3045351 1 NC_008228.1 PFAM: sugar-specific permease, EIIA 1 domain; KEGG: msu:MS1508 phosphotransferase system IIA components; sugar-specific permease EIIA 3045351 4174264 Patl_2509 Pseudoalteromonas atlantica T6c sugar-specific permease EIIA YP_662079.1 3044851 D 342610 CDS YP_662080.1 109898825 4174265 complement(3045359..3047614) 1 NC_008228.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: cps:CPS_0277 isoquinoline 1-oxidoreductase, beta subunit; twin-arginine translocation pathway signal protein 3047614 4174265 Patl_2510 Pseudoalteromonas atlantica T6c twin-arginine translocation pathway signal protein YP_662080.1 3045359 R 342610 CDS YP_662081.1 109898826 4174266 complement(3047611..3048111) 1 NC_008228.1 PFAM: ferredoxin [2Fe-2S]-binding; KEGG: ccr:CC0022 isoquinoline 1-oxidoreductase, alpha subunit; (2Fe-2S)-binding protein 3048111 4174266 Patl_2511 Pseudoalteromonas atlantica T6c (2Fe-2S)-binding protein YP_662081.1 3047611 R 342610 CDS YP_662082.1 109898827 4174267 complement(3048142..3048807) 1 NC_008228.1 KEGG: cps:CPS_0279 conserved hypothetical protein; hypothetical protein 3048807 4174267 Patl_2512 Pseudoalteromonas atlantica T6c hypothetical protein YP_662082.1 3048142 R 342610 CDS YP_662083.1 109898828 4174268 complement(3048804..3049850) 1 NC_008228.1 PFAM: protein of unknown function DUF182; KEGG: cps:CPS_0280 putative xanthine dehydrogenase accessory factor; hypothetical protein 3049850 4174268 Patl_2513 Pseudoalteromonas atlantica T6c hypothetical protein YP_662083.1 3048804 R 342610 CDS YP_662084.1 109898829 4174269 complement(3049855..3051216) 1 NC_008228.1 PFAM: RDD domain containing protein; KEGG: son:SO2902 hypothetical protein; RDD domain-containing protein 3051216 4174269 Patl_2514 Pseudoalteromonas atlantica T6c RDD domain-containing protein YP_662084.1 3049855 R 342610 CDS YP_662085.1 109898830 4174270 complement(3051230..3052408) 1 NC_008228.1 KEGG: cps:CPS_3297 hypothetical protein; hypothetical protein 3052408 4174270 Patl_2515 Pseudoalteromonas atlantica T6c hypothetical protein YP_662085.1 3051230 R 342610 CDS YP_662086.1 109898831 4174271 complement(3052408..3053244) 1 NC_008228.1 PFAM: AAA ATPase, central region ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: cps:CPS_3298 hypothetical protein; ATPase 3053244 4174271 Patl_2516 Pseudoalteromonas atlantica T6c ATPase YP_662086.1 3052408 R 342610 CDS YP_662087.1 109898832 4174272 3053657..3054622 1 NC_008228.1 TIGRFAM: cysteine synthases cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: son:SO2903 cysteine synthase A; cysteine synthase A 3054622 4174272 Patl_2517 Pseudoalteromonas atlantica T6c cysteine synthase A YP_662087.1 3053657 D 342610 CDS YP_662088.1 109898833 4174273 3054749..3055201 1 NC_008228.1 KEGG: cps:CPS_2250 putative lipoprotein; putative lipoprotein 3055201 4174273 Patl_2518 Pseudoalteromonas atlantica T6c putative lipoprotein YP_662088.1 3054749 D 342610 CDS YP_662089.1 109898834 4174274 3055302..3056471 1 NC_008228.1 PFAM: protein of unknown function DUF1006; KEGG: son:SO4332 hypothetical protein; hypothetical protein 3056471 4174274 Patl_2519 Pseudoalteromonas atlantica T6c hypothetical protein YP_662089.1 3055302 D 342610 CDS YP_662090.1 109898835 4174275 3056508..3056876 1 NC_008228.1 KEGG: hch:HCH_03108 hypothetical protein; hypothetical protein 3056876 4174275 Patl_2520 Pseudoalteromonas atlantica T6c hypothetical protein YP_662090.1 3056508 D 342610 CDS YP_662091.1 109898836 4174276 complement(3056904..3057335) 1 NC_008228.1 PFAM: CBS domain containing protein; KEGG: cps:CPS_4877 putative acetoin utilization protein AcuB; signal transduction protein 3057335 4174276 Patl_2521 Pseudoalteromonas atlantica T6c signal transduction protein YP_662091.1 3056904 R 342610 CDS YP_662092.1 109898837 4174277 3057722..3058309 1 NC_008228.1 KEGG: cps:CPS_2148 membrane protein, Rhomboid family; rhomboid family membrane protein 3058309 4174277 Patl_2522 Pseudoalteromonas atlantica T6c rhomboid family membrane protein YP_662092.1 3057722 D 342610 CDS YP_662093.1 109898838 4174278 3058374..3058805 1 NC_008228.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: ava:Ava_B0058 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 3058805 4174278 Patl_2523 Pseudoalteromonas atlantica T6c glutathione-dependent formaldehyde-activating protein YP_662093.1 3058374 D 342610 CDS YP_662094.1 109898839 4174279 complement(3058933..3059505) 1 NC_008228.1 Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; elongation factor P 3059505 4174279 Patl_2524 Pseudoalteromonas atlantica T6c elongation factor P YP_662094.1 3058933 R 342610 CDS YP_662095.1 109898840 4174280 complement(3059716..3062268) 1 NC_008228.1 PFAM: peptidase S9, prolyl oligopeptidase active site region peptidase S9B, dipeptidylpeptidase IV-like; KEGG: pha:PSHAa1568 enzymatic protein; peptidase S9, prolyl oligopeptidase active site region 3062268 4174280 Patl_2525 Pseudoalteromonas atlantica T6c peptidase S9, prolyl oligopeptidase active site region YP_662095.1 3059716 R 342610 CDS YP_662096.1 109898841 4174281 3062452..3062994 1 NC_008228.1 PFAM: glutathione peroxidase; KEGG: reu:Reut_A0042 glutathione peroxidase; glutathione peroxidase 3062994 4174281 Patl_2526 Pseudoalteromonas atlantica T6c glutathione peroxidase YP_662096.1 3062452 D 342610 CDS YP_662097.1 109898842 4174282 complement(3063055..3063663) 1 NC_008228.1 PFAM: NAD(P)H dehydrogenase (quinone) NADPH-dependent FMN reductase; KEGG: bur:Bcep18194_A3615 (acyl-carrier protein) phosphodiesterase; (acyl-carrier protein) phosphodiesterase 3063663 4174282 Patl_2527 Pseudoalteromonas atlantica T6c (acyl-carrier protein) phosphodiesterase YP_662097.1 3063055 R 342610 CDS YP_662098.1 109898843 4174283 complement(3063765..3064877) 1 NC_008228.1 KEGG: mca:MCA0589 nitrate transporter, putative; nitrate transporter 3064877 4174283 Patl_2528 Pseudoalteromonas atlantica T6c nitrate transporter YP_662098.1 3063765 R 342610 CDS YP_662099.1 109898844 4174284 complement(3064870..3065508) 1 NC_008228.1 PFAM: response regulator receiver ANTAR; KEGG: mlo:mlr2855 two-component response regulator; response regulator receiver/ANTAR domain-containing protein 3065508 4174284 Patl_2529 Pseudoalteromonas atlantica T6c response regulator receiver/ANTAR domain-containing protein YP_662099.1 3064870 R 342610 CDS YP_662100.1 109898845 4174285 complement(3065943..3067028) 1 NC_008228.1 PFAM: glycosyl transferase, family 3; KEGG: pfo:Pfl_3579 glycosyl transferase, family 3; hypothetical protein 3067028 4174285 Patl_2530 Pseudoalteromonas atlantica T6c hypothetical protein YP_662100.1 3065943 R 342610 CDS YP_662101.1 109898846 4174286 complement(3067192..3068220) 1 NC_008228.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pae:PA2611 uroporphyrin-III C-methyltransferase / precorrin-2 oxidase / ferrochelatase; uroporphyrin-III C-methyltransferase 3068220 4174286 Patl_2531 Pseudoalteromonas atlantica T6c uroporphyrin-III C-methyltransferase YP_662101.1 3067192 R 342610 CDS YP_662102.1 109898847 4174287 complement(3068217..3071120) 1 NC_008228.1 PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region molybdopterin oxidoreductase Fe4S4 region BFD-like [2Fe-2S]-binding region; KEGG: cps:CPS_4945 nitrate reductase; molybdopterin oxidoreductase 3071120 4174287 Patl_2532 Pseudoalteromonas atlantica T6c molybdopterin oxidoreductase YP_662102.1 3068217 R 342610 CDS YP_662103.1 109898848 4174288 complement(3071170..3071514) 1 NC_008228.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; KEGG: cps:CPS_4946 nitrite reductase [NAD(P)H], small subunit; nitrite reductase (NAD(P)H) small subunit 3071514 4174288 Patl_2533 Pseudoalteromonas atlantica T6c nitrite reductase (NAD(P)H) small subunit YP_662103.1 3071170 R 342610 CDS YP_662104.1 109898849 4174289 complement(3071525..3074110) 1 NC_008228.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like nitrite and sulphite reductase 4Fe-4S region BFD-like [2Fe-2S]-binding region; KEGG: cps:CPS_4947 nitrite reductase [NAD(P)H], large subunit; nitrite reductase (NAD(P)H) large subunit 3074110 4174289 Patl_2534 Pseudoalteromonas atlantica T6c nitrite reductase (NAD(P)H) large subunit YP_662104.1 3071525 R 342610 CDS YP_662105.1 109898850 4174290 3074687..3075568 1 NC_008228.1 PFAM: GumN; KEGG: cps:CPS_4737 hypothetical protein; GumN protein 3075568 4174290 Patl_2535 Pseudoalteromonas atlantica T6c GumN protein YP_662105.1 3074687 D 342610 CDS YP_662106.1 109898851 4174291 3075604..3076374 1 NC_008228.1 PFAM: UBA/THIF-type NAD/FAD binding fold MoeZ/MoeB; KEGG: vfi:VF1609 molybdopterin biosynthesis MoeB protein; UBA/THIF-type NAD/FAD binding domain-containing protein 3076374 4174291 Patl_2536 Pseudoalteromonas atlantica T6c UBA/THIF-type NAD/FAD binding domain-containing protein YP_662106.1 3075604 D 342610 CDS YP_662107.1 109898852 4174292 3076514..3077761 1 NC_008228.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain MoeA-like, domain I and II MoeA-like, domain IV; KEGG: vpa:VPA1170 molybdopterin biosynthesis MoeA protein; molybdenum cofactor synthesis domain-containing protein 3077761 4174292 Patl_2537 Pseudoalteromonas atlantica T6c molybdenum cofactor synthesis domain-containing protein YP_662107.1 3076514 D 342610 CDS YP_662108.1 109898853 4174293 3077762..3079126 1 NC_008228.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cps:CPS_2915 multidrug resistance protein NorM; MATE efflux family protein 3079126 4174293 Patl_2538 Pseudoalteromonas atlantica T6c MATE efflux family protein YP_662108.1 3077762 D 342610 CDS YP_662109.1 109898854 4174294 3079273..3080610 1 NC_008228.1 PFAM: beta-lactamase; KEGG: vfi:VF0968 beta-lactamase family protein; serine-type D-Ala-D-Ala carboxypeptidase 3080610 4174294 Patl_2539 Pseudoalteromonas atlantica T6c serine-type D-Ala-D-Ala carboxypeptidase YP_662109.1 3079273 D 342610 CDS YP_662110.1 109898855 4174295 complement(3080657..3081454) 1 NC_008228.1 SMART: extracellular solute-binding protein, family 3; KEGG: dvu:DVU0852 extracellular solute-binding protein, putative; extracellular solute-binding protein 3081454 4174295 Patl_2540 Pseudoalteromonas atlantica T6c extracellular solute-binding protein YP_662110.1 3080657 R 342610 CDS YP_662111.1 109898856 4174296 complement(3081735..3083252) 1 NC_008228.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: pha:PSHAb0023 hypothetical protein; xanthine/uracil/vitamin C permease 3083252 4174296 Patl_2541 Pseudoalteromonas atlantica T6c xanthine/uracil/vitamin C permease YP_662111.1 3081735 R 342610 CDS YP_662112.1 109898857 4174297 3083417..3084037 1 NC_008228.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: vpa:VP1862 putative threonine efflux protein; lysine exporter protein LysE/YggA 3084037 4174297 Patl_2542 Pseudoalteromonas atlantica T6c lysine exporter protein LysE/YggA YP_662112.1 3083417 D 342610 CDS YP_662113.1 109898858 4174298 complement(3084125..3084508) 1 NC_008228.1 KEGG: pae:PA3502 hypothetical protein; hypothetical protein 3084508 4174298 Patl_2543 Pseudoalteromonas atlantica T6c hypothetical protein YP_662113.1 3084125 R 342610 CDS YP_662114.1 109898859 4174299 3084705..3086423 1 NC_008228.1 PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: dar:Daro_4086 response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal; periplasmic sensor hybrid histidine kinase 3086423 4174299 Patl_2544 Pseudoalteromonas atlantica T6c periplasmic sensor hybrid histidine kinase YP_662114.1 3084705 D 342610 CDS YP_662115.1 109898860 4174300 complement(3086533..3087249) 1 NC_008228.1 PFAM: SapC; KEGG: cps:CPS_0240 hypothetical protein; protein SapC protein 3087249 4174300 Patl_2545 Pseudoalteromonas atlantica T6c protein SapC protein YP_662115.1 3086533 R 342610 CDS YP_662116.1 109898861 4174301 complement(3087311..3088864) 1 NC_008228.1 PFAM: tryptophan halogenase; KEGG: cps:CPS_0239 putative tryptophan halogenase; tryptophan halogenase 3088864 4174301 Patl_2546 Pseudoalteromonas atlantica T6c tryptophan halogenase YP_662116.1 3087311 R 342610 CDS YP_662117.1 109898862 4174302 complement(3089048..3091822) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3737 TonB-dependent receptor; TonB-dependent receptor 3091822 4174302 Patl_2547 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_662117.1 3089048 R 342610 CDS YP_662118.1 109898863 4174303 3092215..3092316 1 NC_008228.1 hypothetical protein 3092316 4174303 Patl_2548 Pseudoalteromonas atlantica T6c hypothetical protein YP_662118.1 3092215 D 342610 CDS YP_662119.1 109898864 4174304 complement(3092399..3093010) 1 NC_008228.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: bld:BLi01972 hypothetical protein; GntR family transcriptional regulator 3093010 4174304 Patl_2549 Pseudoalteromonas atlantica T6c GntR family transcriptional regulator YP_662119.1 3092399 R 342610 CDS YP_662120.1 109898865 4174305 3093175..3094311 1 NC_008228.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: sco:SCO3480 putative racemase; mandelate racemase/muconate lactonizing-like protein 3094311 4174305 Patl_2550 Pseudoalteromonas atlantica T6c mandelate racemase/muconate lactonizing-like protein YP_662120.1 3093175 D 342610 CDS YP_662121.1 109898866 4174306 3094321..3095346 1 NC_008228.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: nfa:nfa30750 putative dehydrogenase; alcohol dehydrogenase GroES-like protein 3095346 4174306 Patl_2551 Pseudoalteromonas atlantica T6c alcohol dehydrogenase GroES-like protein YP_662121.1 3094321 D 342610 CDS YP_662122.1 109898867 4174307 3095373..3096137 1 NC_008228.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bld:BLi03830 2-keto-3-deoxygluconate oxidoreductase; RBL02950; short-chain dehydrogenase/reductase SDR 3096137 4174307 Patl_2552 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_662122.1 3095373 D 342610 CDS YP_662123.1 109898868 4174308 3096143..3097606 1 NC_008228.1 PFAM: aldehyde dehydrogenase; KEGG: gox:GOX1712 aldehyde dehydrogenase; betaine aldehyde dehydrogenase 3097606 4174308 Patl_2553 Pseudoalteromonas atlantica T6c betaine aldehyde dehydrogenase YP_662123.1 3096143 D 342610 CDS YP_662124.1 109898869 4174309 complement(3097836..3098699) 1 NC_008228.1 TIGRFAM: dethiobiotin synthase; KEGG: pfl:PFL_5689 dethiobiotin synthetase; dethiobiotin synthase 3098699 4174309 Patl_2554 Pseudoalteromonas atlantica T6c dethiobiotin synthase YP_662124.1 3097836 R 342610 CDS YP_662125.1 109898870 4174310 complement(3098767..3099714) 1 NC_008228.1 PFAM: UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: psb:Psyr_4684 biotin synthesis protein BioC; type 11 methyltransferase 3099714 4174310 Patl_2555 Pseudoalteromonas atlantica T6c type 11 methyltransferase YP_662125.1 3098767 R 342610 CDS YP_662126.1 109898871 4174311 complement(3099728..3100960) 1 NC_008228.1 PFAM: aminotransferase, class I and II aminotransferase class-III; KEGG: pfo:Pfl_5175 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase 3100960 4174311 Patl_2556 Pseudoalteromonas atlantica T6c 8-amino-7-oxononanoate synthase YP_662126.1 3099728 R 342610 CDS YP_662127.1 109898872 4174312 complement(3100960..3102069) 1 NC_008228.1 KEGG: vpa:VP1113 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 3102069 4174312 Patl_2557 Pseudoalteromonas atlantica T6c biotin synthase YP_662127.1 3100960 R 342610 CDS YP_662128.1 109898873 4174313 3102168..3103448 1 NC_008228.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: stt:t2094 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 3103448 4174313 Patl_2558 Pseudoalteromonas atlantica T6c adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_662128.1 3102168 D 342610 CDS YP_662129.1 109898874 4174314 complement(3103496..3104410) 1 NC_008228.1 KEGG: ppr:PBPRA2842 hypothetical protein; hypothetical protein 3104410 4174314 Patl_2559 Pseudoalteromonas atlantica T6c hypothetical protein YP_662129.1 3103496 R 342610 CDS YP_662130.1 109898875 4174315 complement(3104709..3105086) 1 NC_008228.1 PFAM: Invasion gene expression up-regulator, SirB; KEGG: son:SO3830 hypothetical protein; invasion gene expression up-regulator SirB 3105086 4174315 Patl_2560 Pseudoalteromonas atlantica T6c invasion gene expression up-regulator SirB YP_662130.1 3104709 R 342610 CDS YP_662131.1 109898876 4174316 complement(3105172..3106725) 1 NC_008228.1 PFAM: response regulator receiver metal-dependent phosphohydrolase, HD subdomain; KEGG: dde:Dde_3114 metal dependent phosphohydrolase; response regulator receiver modulated metal dependent phosphohydrolase 3106725 4174316 Patl_2561 Pseudoalteromonas atlantica T6c response regulator receiver modulated metal dependent phosphohydrolase YP_662131.1 3105172 R 342610 CDS YP_662132.1 109898877 4174317 complement(3106831..3107727) 1 NC_008228.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: cps:CPS_3551 modification methylase, HemK family; HemK family modification methylase 3107727 4174317 Patl_2562 Pseudoalteromonas atlantica T6c HemK family modification methylase YP_662132.1 3106831 R 342610 CDS YP_662133.1 109898878 4174318 complement(3107733..3108821) 1 NC_008228.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 3108821 prfA 4174318 prfA Pseudoalteromonas atlantica T6c peptide chain release factor 1 YP_662133.1 3107733 R 342610 CDS YP_662134.1 109898879 4174319 complement(3108923..3110194) 1 NC_008228.1 PFAM: glutamyl-tRNA reductase Shikimate/quinate 5-dehydrogenase; KEGG: son:SO3834 glutamyl-tRNA reductase; shikimate/quinate 5-dehydrogenase 3110194 4174319 Patl_2564 Pseudoalteromonas atlantica T6c shikimate/quinate 5-dehydrogenase YP_662134.1 3108923 R 342610 CDS YP_662135.1 109898880 4174320 3110284..3110940 1 NC_008228.1 PFAM: outer membrane lipoprotein LolB; KEGG: son:SO3835 outer membrane lipoprotein LolB; outer membrane lipoprotein LolB 3110940 4174320 Patl_2565 Pseudoalteromonas atlantica T6c outer membrane lipoprotein LolB YP_662135.1 3110284 D 342610 CDS YP_662136.1 109898881 4174321 3110925..3111785 1 NC_008228.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 3111785 ipk 4174321 ipk Pseudoalteromonas atlantica T6c 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_662136.1 3110925 D 342610 CDS YP_662137.1 109898882 4174323 3111946..3112893 1 NC_008228.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 3112893 4174323 Patl_2567 Pseudoalteromonas atlantica T6c ribose-phosphate pyrophosphokinase YP_662137.1 3111946 D 342610 CDS YP_662138.1 109898883 4174324 3113044..3114120 1 NC_008228.1 PFAM: MscS Mechanosensitive ion channel; KEGG: gsu:GSU2357 hypothetical protein; mechanosensitive ion channel protein MscS 3114120 4174324 Patl_2568 Pseudoalteromonas atlantica T6c mechanosensitive ion channel protein MscS YP_662138.1 3113044 D 342610 CDS YP_662139.1 109898884 4174325 3114367..3115008 1 NC_008228.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 3115008 4174325 Patl_2569 Pseudoalteromonas atlantica T6c 50S ribosomal protein L25/general stress protein Ctc YP_662139.1 3114367 D 342610 CDS YP_662140.1 109898885 4174326 3115014..3115598 1 NC_008228.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 3115598 4174326 Patl_2570 Pseudoalteromonas atlantica T6c peptidyl-tRNA hydrolase YP_662140.1 3115014 D 342610 CDS YP_662141.1 109898886 4174327 3115643..3116734 1 NC_008228.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 3116734 4174327 Patl_2571 Pseudoalteromonas atlantica T6c GTP-dependent nucleic acid-binding protein EngD YP_662141.1 3115643 D 342610 CDS YP_662142.1 109898887 4174328 3117012..3118256 1 NC_008228.1 PFAM: extracellular solute-binding protein, family 1; KEGG: hch:HCH_00071 ABC-type sugar transport system, periplasmic component; extracellular solute-binding protein 3118256 4174328 Patl_2572 Pseudoalteromonas atlantica T6c extracellular solute-binding protein YP_662142.1 3117012 D 342610 CDS YP_662143.1 109898888 4174329 3118449..3118892 1 NC_008228.1 KEGG: xcv:XCV0135 hypothetical protein; hypothetical protein 3118892 4174329 Patl_2573 Pseudoalteromonas atlantica T6c hypothetical protein YP_662143.1 3118449 D 342610 CDS YP_662144.1 109898889 4174335 3120677..3122092 1 NC_008228.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: pha:PSHAb0545 putative amino acid permease; amino acid carrier protein 3122092 4174335 Patl_2575 Pseudoalteromonas atlantica T6c amino acid carrier protein YP_662144.1 3120677 D 342610 CDS YP_662145.1 109898890 4174336 complement(3122222..3122791) 1 NC_008228.1 PFAM: NAD(P)H dehydrogenase (quinone) NADPH-dependent FMN reductase; KEGG: pcu:pc0973 hypothetical protein; NADPH-dependent FMN reductase 3122791 4174336 Patl_2576 Pseudoalteromonas atlantica T6c NADPH-dependent FMN reductase YP_662145.1 3122222 R 342610 CDS YP_662146.1 109898891 4174337 complement(3123109..3125001) 1 NC_008228.1 PFAM: protein of unknown function DUF885; KEGG: cps:CPS_3202 putative lipoprotein; hypothetical protein 3125001 4174337 Patl_2577 Pseudoalteromonas atlantica T6c hypothetical protein YP_662146.1 3123109 R 342610 CDS YP_662147.1 109898892 4174338 complement(3125056..3126201) 1 NC_008228.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: vfi:VF0760 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 3126201 4174338 Patl_2578 Pseudoalteromonas atlantica T6c UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase YP_662147.1 3125056 R 342610 CDS YP_662148.1 109898893 4174339 3126506..3128149 1 NC_008228.1 PFAM: TPR repeat response regulator receiver Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ilo:IL0829 response regulator with TPR repeat; response regulator receiver protein 3128149 4174339 Patl_2579 Pseudoalteromonas atlantica T6c response regulator receiver protein YP_662148.1 3126506 D 342610 CDS YP_662149.1 109898894 4174340 3128146..3128430 1 NC_008228.1 hypothetical protein 3128430 4174340 Patl_2580 Pseudoalteromonas atlantica T6c hypothetical protein YP_662149.1 3128146 D 342610 CDS YP_662150.1 109898895 4174341 complement(3128554..3130200) 1 NC_008228.1 KEGG: hch:HCH_00494 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein histidine kinase, HAMP region PAS fold-4; SMART: PAS; PAS/PAC sensor-containing diguanylate cyclase 3130200 4174341 Patl_2581 Pseudoalteromonas atlantica T6c PAS/PAC sensor-containing diguanylate cyclase YP_662150.1 3128554 R 342610 CDS YP_662151.1 109898896 4174342 complement(3130197..3130643) 1 NC_008228.1 KEGG: eba:ebB54 hypothetical protein; hypothetical protein 3130643 4174342 Patl_2582 Pseudoalteromonas atlantica T6c hypothetical protein YP_662151.1 3130197 R 342610 CDS YP_662152.1 109898897 4174343 complement(3130640..3131938) 1 NC_008228.1 KEGG: vch:VC2456 hypothetical protein; hypothetical protein 3131938 4174343 Patl_2583 Pseudoalteromonas atlantica T6c hypothetical protein YP_662152.1 3130640 R 342610 CDS YP_662153.1 109898898 4174344 complement(3132500..3134833) 1 NC_008228.1 KEGG: hma:rrnAC3030 hypothetical protein; hypothetical protein 3134833 4174344 Patl_2584 Pseudoalteromonas atlantica T6c hypothetical protein YP_662153.1 3132500 R 342610 CDS YP_662154.1 109898899 4174345 complement(3135083..3137455) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_4420 TonB-dependent receptor; TonB-dependent receptor 3137455 4174345 Patl_2585 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_662154.1 3135083 R 342610 CDS YP_662155.1 109898900 4174346 complement(3137547..3138764) 1 NC_008228.1 KEGG: pha:PSHAb0417 putative quaternary ammonium permease; putative quaternary ammonium permease 3138764 4174346 Patl_2586 Pseudoalteromonas atlantica T6c putative quaternary ammonium permease YP_662155.1 3137547 R 342610 CDS YP_662156.1 109898901 4174347 complement(3138869..3140539) 1 NC_008228.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 3140539 4174347 Patl_2587 Pseudoalteromonas atlantica T6c choline dehydrogenase YP_662156.1 3138869 R 342610 CDS YP_662157.1 109898902 4174348 complement(3140539..3142014) 1 NC_008228.1 catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase 3142014 4174348 Patl_2588 Pseudoalteromonas atlantica T6c betaine aldehyde dehydrogenase YP_662157.1 3140539 R 342610 CDS YP_662158.1 109898903 4174349 complement(3142004..3142594) 1 NC_008228.1 HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI 3142594 4174349 Patl_2589 Pseudoalteromonas atlantica T6c transcriptional regulator BetI YP_662158.1 3142004 R 342610 CDS YP_662159.1 109898904 4174350 3143163..3144359 1 NC_008228.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: son:SO2915 acetate kinase; acetate kinase 3144359 4174350 Patl_2590 Pseudoalteromonas atlantica T6c acetate kinase YP_662159.1 3143163 D 342610 CDS YP_662160.1 109898905 4174351 3144369..3146513 1 NC_008228.1 KEGG: eca:ECA3040 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase DRTGG; phosphate acetyltransferase 3146513 4174351 Patl_2591 Pseudoalteromonas atlantica T6c phosphate acetyltransferase YP_662160.1 3144369 D 342610 CDS YP_662161.1 109898906 4174352 complement(3146680..3147651) 1 NC_008228.1 PFAM: phosphofructokinase; KEGG: sru:SRU_0825 6-phosphofructokinase; 6-phosphofructokinase 3147651 4174352 Patl_2592 Pseudoalteromonas atlantica T6c 6-phosphofructokinase YP_662161.1 3146680 R 342610 CDS YP_662162.1 109898907 4174353 complement(3147691..3148374) 1 NC_008228.1 KEGG: ath:At1g22170 phosphoglycerate/bisphosphoglycerate mutase family protein; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 3148374 4174353 Patl_2593 Pseudoalteromonas atlantica T6c phosphoglycerate mutase YP_662162.1 3147691 R 342610 CDS YP_662163.1 109898908 4174354 3149083..3151521 1 NC_008228.1 TIGRFAM: phosphoenolpyruvate synthase; PFAM: PEP-utilizing enzyme pyruvate phosphate dikinase, PEP/pyruvate-binding PEP-utilising enzyme, mobile region; KEGG: mac:MA2667 pyruvate water dikinase; phosphoenolpyruvate synthase 3151521 4174354 Patl_2594 Pseudoalteromonas atlantica T6c phosphoenolpyruvate synthase YP_662163.1 3149083 D 342610 CDS YP_662164.1 109898909 4174355 3151913..3153547 1 NC_008228.1 PFAM: Cl- channel, voltage gated; KEGG: pca:Pcar_1620 putative chloride channel; VWA containing CoxE-like protein 3153547 4174355 Patl_2595 Pseudoalteromonas atlantica T6c VWA containing CoxE-like protein YP_662164.1 3151913 D 342610 CDS YP_662165.1 109898910 4174356 complement(3153601..3154614) 1 NC_008228.1 KEGG: bte:BTH_I1196 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 3154614 4174356 Patl_2596 Pseudoalteromonas atlantica T6c glyceraldehyde-3-phosphate dehydrogenase, type I YP_662165.1 3153601 R 342610 CDS YP_662166.1 109898911 4174357 3155331..3155552 1 NC_008228.1 KEGG: pha:PSHAa1766 hypothetical protein; hypothetical protein 3155552 4174357 Patl_2597 Pseudoalteromonas atlantica T6c hypothetical protein YP_662166.1 3155331 D 342610 CDS YP_662167.1 109898912 4174358 complement(3155628..3156836) 1 NC_008228.1 PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase; transposase, IS4 3156836 4174358 Patl_2598 Pseudoalteromonas atlantica T6c transposase, IS4 YP_662167.1 3155628 R 342610 CDS YP_662168.1 109898913 4174359 complement(3157083..3161396) 1 NC_008228.1 PFAM: SNF2-related helicase-like; SMART: DEAD/DEAH box helicase-like; KEGG: dps:DP0995 helicase; hypothetical protein 3161396 4174359 Patl_2599 Pseudoalteromonas atlantica T6c hypothetical protein YP_662168.1 3157083 R 342610 CDS YP_662169.1 109898914 4174360 complement(3161674..3162447) 1 NC_008228.1 KEGG: pha:PSHAa2454 hypothetical protein; membrane protein; hypothetical protein 3162447 4174360 Patl_2600 Pseudoalteromonas atlantica T6c hypothetical protein YP_662169.1 3161674 R 342610 CDS YP_662170.1 109898915 4174361 3162875..3163339 1 NC_008228.1 PFAM: ferredoxin [2Fe-2S]-binding; KEGG: mlo:mll3837 isoquinoline 1-oxidoreductase, alpha subunit; (2Fe-2S)-binding protein 3163339 4174361 Patl_2601 Pseudoalteromonas atlantica T6c (2Fe-2S)-binding protein YP_662170.1 3162875 D 342610 CDS YP_662171.1 109898916 4174362 3163336..3165585 1 NC_008228.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: mlo:mll3836 aldehyde dehydrogenase; aldehyde oxidase and xanthine dehydrogenase 3165585 4174362 Patl_2602 Pseudoalteromonas atlantica T6c aldehyde oxidase and xanthine dehydrogenase YP_662171.1 3163336 D 342610 CDS YP_662172.1 109898917 4174363 3165596..3166216 1 NC_008228.1 KEGG: mlo:mll3835 hypothetical protein; hypothetical protein 3166216 4174363 Patl_2603 Pseudoalteromonas atlantica T6c hypothetical protein YP_662172.1 3165596 D 342610 CDS YP_662173.1 109898918 4174364 complement(3166306..3168426) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_4488 TonB-dependent receptor; TonB-dependent receptor 3168426 4174364 Patl_2604 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_662173.1 3166306 R 342610 CDS YP_662174.1 109898919 4174365 complement(3168502..3168813) 1 NC_008228.1 hypothetical protein 3168813 4174365 Patl_2605 Pseudoalteromonas atlantica T6c hypothetical protein YP_662174.1 3168502 R 342610 CDS YP_662175.1 109898920 4174366 complement(3169218..3169778) 1 NC_008228.1 hypothetical protein 3169778 4174366 Patl_2606 Pseudoalteromonas atlantica T6c hypothetical protein YP_662175.1 3169218 R 342610 CDS YP_662176.1 109898921 4174367 complement(3169916..3171370) 1 NC_008228.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: protein of unknown function DUF839; KEGG: rba:RB8885 conserved hypothetical protein-putative phosphatase; twin-arginine translocation pathway signal protein 3171370 4174367 Patl_2607 Pseudoalteromonas atlantica T6c twin-arginine translocation pathway signal protein YP_662176.1 3169916 R 342610 CDS YP_662177.1 109898922 4174368 complement(3171554..3172345) 1 NC_008228.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: pub:SAR11_0977 sec-independent protein translocase protein TatC; Sec-independent protein translocase subunit TatC 3172345 4174368 Patl_2608 Pseudoalteromonas atlantica T6c Sec-independent protein translocase subunit TatC YP_662177.1 3171554 R 342610 CDS YP_662178.1 109898923 4174369 complement(3172342..3172770) 1 NC_008228.1 KEGG: bpa:BPP4277 Sec-independent protein translocase protein; hypothetical protein 3172770 4174369 Patl_2609 Pseudoalteromonas atlantica T6c hypothetical protein YP_662178.1 3172342 R 342610 CDS YP_662179.1 109898924 4174370 complement(3172824..3173105) 1 NC_008228.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: mlo:msl1085 sec-independent protein translocase protein tatA/E; twin arginine-targeting protein translocase 3173105 4174370 Patl_2610 Pseudoalteromonas atlantica T6c twin arginine-targeting protein translocase YP_662179.1 3172824 R 342610 CDS YP_662180.1 109898925 4174371 3173290..3173835 1 NC_008228.1 hypothetical protein 3173835 4174371 Patl_2611 Pseudoalteromonas atlantica T6c hypothetical protein YP_662180.1 3173290 D 342610 CDS YP_662181.1 109898926 4174372 3173898..3174239 1 NC_008228.1 KEGG: ppr:PBPRA0236 putative 5-carboxymethyl-2-hydroxymuconate delta isomerase; putative 5-carboxymethyl-2-hydroxymuconate delta isomerase 3174239 4174372 Patl_2612 Pseudoalteromonas atlantica T6c putative 5-carboxymethyl-2-hydroxymuconate delta isomerase YP_662181.1 3173898 D 342610 CDS YP_662182.1 109898927 4174373 3174839..3176086 1 NC_008228.1 PFAM: Patatin; KEGG: pha:PSHAb0541 putative hydrolase similar to YjjU; patatin 3176086 4174373 Patl_2613 Pseudoalteromonas atlantica T6c patatin YP_662182.1 3174839 D 342610 CDS YP_662183.1 109898928 4174374 complement(3176455..3177342) 1 NC_008228.1 hypothetical protein 3177342 4174374 Patl_2614 Pseudoalteromonas atlantica T6c hypothetical protein YP_662183.1 3176455 R 342610 CDS YP_662184.1 109898929 4174375 complement(3177867..3178376) 1 NC_008228.1 KEGG: nar:Saro_2352 hypothetical protein; hypothetical protein 3178376 4174375 Patl_2615 Pseudoalteromonas atlantica T6c hypothetical protein YP_662184.1 3177867 R 342610 CDS YP_662185.1 109898930 4174376 complement(3178609..3179670) 1 NC_008228.1 PFAM: beta-lactamase; KEGG: sha:SH0620 hypothetical protein; beta-lactamase 3179670 4174376 Patl_2616 Pseudoalteromonas atlantica T6c beta-lactamase YP_662185.1 3178609 R 342610 CDS YP_662186.1 109898931 4174377 3180605..3181474 1 NC_008228.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pha:PSHAb0256 transporter involved in threonine and homoserine efflux; hypothetical protein 3181474 4174377 Patl_2617 Pseudoalteromonas atlantica T6c hypothetical protein YP_662186.1 3180605 D 342610 CDS YP_662187.1 109898932 4174378 complement(3181690..3182610) 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: son:SO1876 NodD transcription activator-related protein; LysR family transcriptional regulator 3182610 4174378 Patl_2618 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_662187.1 3181690 R 342610 CDS YP_662188.1 109898933 4174379 3182773..3183378 1 NC_008228.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO1873 short chain dehydrogenase; short chain dehydrogenase 3183378 4174379 Patl_2619 Pseudoalteromonas atlantica T6c short chain dehydrogenase YP_662188.1 3182773 D 342610 CDS YP_662189.1 109898934 4174380 complement(3183929..3184147) 1 NC_008228.1 hypothetical protein 3184147 4174380 Patl_2620 Pseudoalteromonas atlantica T6c hypothetical protein YP_662189.1 3183929 R 342610 CDS YP_662190.1 109898935 4174381 3184537..3185418 1 NC_008228.1 PFAM: metal-dependent protein hydrolase; KEGG: cps:CPS_2163 hypothetical protein; metal-dependent protein hydrolase 3185418 4174381 Patl_2621 Pseudoalteromonas atlantica T6c metal-dependent protein hydrolase YP_662190.1 3184537 D 342610 CDS YP_662191.1 109898936 4174382 complement(3185878..3186564) 1 NC_008228.1 PFAM: helix-turn-helix, AraC type; KEGG: cps:CPS_4694 transcriptional regulator, AraC family; AraC family transcriptional regulator 3186564 4174382 Patl_2622 Pseudoalteromonas atlantica T6c AraC family transcriptional regulator YP_662191.1 3185878 R 342610 CDS YP_662192.1 109898937 4174383 complement(3186635..3187096) 1 NC_008228.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: cps:CPS_4693 alkylhydroperoxidase AhpD family core domain protein; alkylhydroperoxidase 3187096 4174383 Patl_2623 Pseudoalteromonas atlantica T6c alkylhydroperoxidase YP_662192.1 3186635 R 342610 CDS YP_662193.1 109898938 4174384 3187786..3188940 1 NC_008228.1 PFAM: Rieske [2Fe-2S] region; KEGG: fra:Francci3_0190 Rieske (2Fe-2S) protein; Rieske (2Fe-2S) domain-containing protein 3188940 4174384 Patl_2624 Pseudoalteromonas atlantica T6c Rieske (2Fe-2S) domain-containing protein YP_662193.1 3187786 D 342610 CDS YP_662194.1 109898939 4174385 3189038..3189772 1 NC_008228.1 PFAM: NUDIX hydrolase; KEGG: ccr:CC2457 hypothetical protein; NUDIX hydrolase 3189772 4174385 Patl_2625 Pseudoalteromonas atlantica T6c NUDIX hydrolase YP_662194.1 3189038 D 342610 CDS YP_662195.1 109898940 4174386 complement(3189960..3190409) 1 NC_008228.1 KEGG: ilo:IL1489 hypothetical protein; hypothetical protein 3190409 4174386 Patl_2626 Pseudoalteromonas atlantica T6c hypothetical protein YP_662195.1 3189960 R 342610 CDS YP_662196.1 109898941 4174388 complement(3191560..3192273) 1 NC_008228.1 PFAM: Cold-shock protein, DNA-binding protein of unknown function DUF1294; SMART: Cold shock protein; KEGG: neu:NE0717 cold-shock DNA-binding domain; cold-shock DNA-binding domain-containing protein 3192273 4174388 Patl_2628 Pseudoalteromonas atlantica T6c cold-shock DNA-binding domain-containing protein YP_662196.1 3191560 R 342610 CDS YP_662197.1 109898942 4174389 3192536..3192760 1 NC_008228.1 KEGG: pca:Pcar_0527 hypothetical protein; hypothetical protein 3192760 4174389 Patl_2629 Pseudoalteromonas atlantica T6c hypothetical protein YP_662197.1 3192536 D 342610 CDS YP_662198.1 109898943 4174390 3192753..3193043 1 NC_008228.1 KEGG: pca:Pcar_0528 hypothetical protein; hypothetical protein 3193043 4174390 Patl_2630 Pseudoalteromonas atlantica T6c hypothetical protein YP_662198.1 3192753 D 342610 CDS YP_662199.1 109898944 4174391 complement(3193926..3194204) 1 NC_008228.1 KEGG: vvy:VV1875 hypothetical protein; hypothetical protein 3194204 4174391 Patl_2631 Pseudoalteromonas atlantica T6c hypothetical protein YP_662199.1 3193926 R 342610 CDS YP_662200.1 109898945 4174393 complement(3195308..3196228) 1 NC_008228.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: ath:At1g22950 oxidoreductase, 2OG-Fe(II) oxygenase family protein; 2OG-Fe(II) oxygenase 3196228 4174393 Patl_2633 Pseudoalteromonas atlantica T6c 2OG-Fe(II) oxygenase YP_662200.1 3195308 R 342610 CDS YP_662201.1 109898946 4174394 3196655..3198028 1 NC_008228.1 KEGG: cps:CPS_0414 hypothetical protein; hypothetical protein 3198028 4174394 Patl_2634 Pseudoalteromonas atlantica T6c hypothetical protein YP_662201.1 3196655 D 342610 CDS YP_662202.1 109898947 4174395 complement(3198138..3198680) 1 NC_008228.1 KEGG: ilo:IL2633 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 3198680 4174395 Patl_2635 Pseudoalteromonas atlantica T6c lactoylglutathione lyase YP_662202.1 3198138 R 342610 CDS YP_662203.1 109898948 4174396 complement(3198784..3199197) 1 NC_008228.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_4885 acetyltransferase, GNAT family; N-acetyltransferase GCN5 3199197 4174396 Patl_2636 Pseudoalteromonas atlantica T6c N-acetyltransferase GCN5 YP_662203.1 3198784 R 342610 CDS YP_662204.1 109898949 4174397 3199461..3200486 1 NC_008228.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: bcl:ABC0750 oxidoreductase; zinc-binding alcohol dehydrogenase 3200486 4174397 Patl_2637 Pseudoalteromonas atlantica T6c zinc-binding alcohol dehydrogenase YP_662204.1 3199461 D 342610 CDS YP_662205.1 109898950 4174398 3200754..3201386 1 NC_008228.1 PFAM: regulatory protein, TetR; KEGG: bur:Bcep18194_B0251 transcriptional regulator, TetR family; TetR family transcriptional regulator 3201386 4174398 Patl_2638 Pseudoalteromonas atlantica T6c TetR family transcriptional regulator YP_662205.1 3200754 D 342610 CDS YP_662206.1 109898951 4174399 3201444..3202481 1 NC_008228.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: pfo:Pfl_2939 zinc-containing alcohol dehydrogenase superfamily; zinc-binding alcohol dehydrogenase 3202481 4174399 Patl_2639 Pseudoalteromonas atlantica T6c zinc-binding alcohol dehydrogenase YP_662206.1 3201444 D 342610 CDS YP_662207.1 109898952 4174400 complement(3202543..3204984) 1 NC_008228.1 KEGG: sco:SCO3487 hydrolase; agarase 3204984 4174400 Patl_2640 Pseudoalteromonas atlantica T6c agarase YP_662207.1 3202543 R 342610 CDS YP_662208.1 109898953 4174401 complement(3205055..3206251) 1 NC_008228.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: rba:RB12740 gluconolactonase [precursor]; gluconolactonase 3206251 4174401 Patl_2641 Pseudoalteromonas atlantica T6c gluconolactonase YP_662208.1 3205055 R 342610 CDS YP_662209.1 109898954 4174402 complement(3206286..3208634) 1 NC_008228.1 KEGG: sco:SCO3487 hydrolase; agarase 3208634 4174402 Patl_2642 Pseudoalteromonas atlantica T6c agarase YP_662209.1 3206286 R 342610 CDS YP_662210.1 109898955 4174403 complement(3208631..3209317) 1 NC_008228.1 PFAM: KDPG and KHG aldolase; KEGG: oih:OB2214 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase; KDPG and KHG aldolase 3209317 4174403 Patl_2643 Pseudoalteromonas atlantica T6c KDPG and KHG aldolase YP_662210.1 3208631 R 342610 CDS YP_662211.1 109898956 4174404 complement(3209418..3210422) 1 NC_008228.1 PFAM: PfkB; KEGG: mta:Moth_0419 PfkB; PfkB protein 3210422 4174404 Patl_2644 Pseudoalteromonas atlantica T6c PfkB protein YP_662211.1 3209418 R 342610 CDS YP_662212.1 109898957 4174405 complement(3210419..3211819) 1 NC_008228.1 PFAM: major facilitator superfamily MFS_1; KEGG: bld:BLi04069 putative galactonate transporter; RBL01028; major facilitator superfamily transporter 3211819 4174405 Patl_2645 Pseudoalteromonas atlantica T6c major facilitator superfamily transporter YP_662212.1 3210419 R 342610 CDS YP_662213.1 109898958 4174406 complement(3211833..3212987) 1 NC_008228.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: ret:RHE_PE00096 putative galactonate dehydratase protein; mandelate racemase/muconate lactonizing-like protein 3212987 4174406 Patl_2646 Pseudoalteromonas atlantica T6c mandelate racemase/muconate lactonizing-like protein YP_662213.1 3211833 R 342610 CDS YP_662214.1 109898959 4174407 complement(3212984..3213679) 1 NC_008228.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: ret:RHE_PE00101 probable transcriptional regulator protein, GntR family; GntR family transcriptional regulator 3213679 4174407 Patl_2647 Pseudoalteromonas atlantica T6c GntR family transcriptional regulator YP_662214.1 3212984 R 342610 CDS YP_662215.1 109898960 4174408 3213983..3214792 1 NC_008228.1 TIGRFAM: exodeoxyribonuclease III exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ppr:PBPRA2737 putative exodeoxyribonuclease III; exodeoxyribonuclease III 3214792 4174408 Patl_2648 Pseudoalteromonas atlantica T6c exodeoxyribonuclease III YP_662215.1 3213983 D 342610 CDS YP_662216.1 109898961 4174409 3214807..3215463 1 NC_008228.1 KEGG: ppr:PBPRA2767 hypothetical protein; hypothetical protein 3215463 4174409 Patl_2649 Pseudoalteromonas atlantica T6c hypothetical protein YP_662216.1 3214807 D 342610 CDS YP_662217.1 109898962 4174410 complement(3215580..3216254) 1 NC_008228.1 PFAM: ThiJ/PfpI; KEGG: tfu:Tfu_2826 intracellular protease/amidase, putative; ThiJ/PfpI 3216254 4174410 Patl_2650 Pseudoalteromonas atlantica T6c ThiJ/PfpI YP_662217.1 3215580 R 342610 CDS YP_662218.1 109898963 4174411 3216382..3217287 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: vfi:VF0649 transcriptional regulators, LysR family; LysR family transcriptional regulator 3217287 4174411 Patl_2651 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_662218.1 3216382 D 342610 CDS YP_662219.1 109898964 4174412 complement(3217631..3217891) 1 NC_008228.1 hypothetical protein 3217891 4174412 Patl_2652 Pseudoalteromonas atlantica T6c hypothetical protein YP_662219.1 3217631 R 342610 CDS YP_662220.1 109898965 4174413 3218230..3219186 1 NC_008228.1 PFAM: transposase, IS111A/IS1328/IS1533 transposase IS116/IS110/IS902; KEGG: cps:CPS_2742 ISCps7, transposase; transposase IS116/IS110/IS902 3219186 4174413 Patl_2653 Pseudoalteromonas atlantica T6c transposase IS116/IS110/IS902 YP_662220.1 3218230 D 342610 CDS YP_662221.1 109898966 4174414 complement(3219218..3220060) 1 NC_008228.1 KEGG: vvu:VV12407 hypothetical protein; hypothetical protein 3220060 4174414 Patl_2654 Pseudoalteromonas atlantica T6c hypothetical protein YP_662221.1 3219218 R 342610 CDS YP_662222.1 109898967 4174415 complement(3220900..3221400) 1 NC_008228.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_0532 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 3221400 4174415 Patl_2655 Pseudoalteromonas atlantica T6c glyoxalase/bleomycin resistance protein/dioxygenase YP_662222.1 3220900 R 342610 CDS YP_662223.1 109898968 4174416 3221563..3222444 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: cps:CPS_0531 transcriptional regulator, LysR family; LysR family transcriptional regulator 3222444 4174416 Patl_2656 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_662223.1 3221563 D 342610 CDS YP_662224.1 109898969 4174417 3222537..3223808 1 NC_008228.1 PFAM: glycoside hydrolase, family 10; KEGG: xcb:XC_4207 endo-1,4-beta-xylanase A; endo-1,4-beta-xylanase 3223808 4174417 Patl_2657 Pseudoalteromonas atlantica T6c endo-1,4-beta-xylanase YP_662224.1 3222537 D 342610 CDS YP_662225.1 109898970 4174418 complement(3223859..3237928) 1 NC_008228.1 KEGG: par:Psyc_1601 hypothetical protein; hypothetical protein 3237928 4174418 Patl_2658 Pseudoalteromonas atlantica T6c hypothetical protein YP_662225.1 3223859 R 342610 CDS YP_662226.1 109898971 4174419 3238198..3239553 1 NC_008228.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: eba:ebA1783 outer membrane protein, ortholog involved in agglutination in some bacteria; TolC family type I secretion outer membrane protein 3239553 4174419 Patl_2659 Pseudoalteromonas atlantica T6c TolC family type I secretion outer membrane protein YP_662226.1 3238198 D 342610 CDS YP_662227.1 109898972 4174420 3239780..3241843 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: eba:ebA1807 ABC transporter, ATP-binding/permease; ABC transporter-like protein 3241843 4174420 Patl_2660 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_662227.1 3239780 D 342610 CDS YP_662228.1 109898973 4174421 3241840..3243261 1 NC_008228.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD; KEGG: eba:ebA1805 HlyD family secretion protein; HlyD family type I secretion membrane fusion protein 3243261 4174421 Patl_2661 Pseudoalteromonas atlantica T6c HlyD family type I secretion membrane fusion protein YP_662228.1 3241840 D 342610 CDS YP_662229.1 109898974 4174422 complement(3243369..3245291) 1 NC_008228.1 PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: eba:ebA1787 hypothetical protein; diguanylate cyclase/phosphodiesterase 3245291 4174422 Patl_2662 Pseudoalteromonas atlantica T6c diguanylate cyclase/phosphodiesterase YP_662229.1 3243369 R 342610 CDS YP_662230.1 109898975 4174423 complement(3245323..3246084) 1 NC_008228.1 KEGG: eba:ebA1785 hypothetical protein; hypothetical protein 3246084 4174423 Patl_2663 Pseudoalteromonas atlantica T6c hypothetical protein YP_662230.1 3245323 R 342610 CDS YP_662231.1 109898976 4174424 complement(3246230..3248218) 1 NC_008228.1 PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3; SMART: PAC motif; KEGG: dar:Daro_1614 PAS; GAF sensor hybrid histidine kinase 3248218 4174424 Patl_2664 Pseudoalteromonas atlantica T6c GAF sensor hybrid histidine kinase YP_662231.1 3246230 R 342610 CDS YP_662232.1 109898977 4174425 complement(3248574..3250619) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: lpf:lpl1176 hypothetical protein; diguanylate cyclase/phosphodiesterase 3250619 4174425 Patl_2665 Pseudoalteromonas atlantica T6c diguanylate cyclase/phosphodiesterase YP_662232.1 3248574 R 342610 CDS YP_662233.1 109898978 4174426 complement(3250931..3251923) 1 NC_008228.1 catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase 3251923 4174426 Patl_2666 Pseudoalteromonas atlantica T6c D-cysteine desulfhydrase YP_662233.1 3250931 R 342610 CDS YP_662234.1 109898979 4174427 3252109..3253176 1 NC_008228.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like; KEGG: noc:Noc_1416 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 3253176 4174427 Patl_2667 Pseudoalteromonas atlantica T6c magnesium and cobalt transport protein CorA YP_662234.1 3252109 D 342610 CDS YP_662235.1 109898980 4174428 3253372..3254985 1 NC_008228.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 3254985 4174428 Patl_2668 Pseudoalteromonas atlantica T6c F0F1 ATP synthase subunit beta YP_662235.1 3253372 D 342610 CDS YP_662236.1 109898981 4174429 3254975..3255364 1 NC_008228.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 3255364 4174429 Patl_2669 Pseudoalteromonas atlantica T6c F0F1 ATP synthase subunit epsilon YP_662236.1 3254975 D 342610 CDS YP_662237.1 109898982 4174430 3255369..3255761 1 NC_008228.1 TIGRFAM: F0F1-ATPase subunit, putative; KEGG: mba:Mbar_A3104 H(+)-transporting ATP synthase, gene 1; F0F1-ATPase subunit 3255761 4174430 Patl_2670 Pseudoalteromonas atlantica T6c F0F1-ATPase subunit YP_662237.1 3255369 D 342610 CDS YP_662238.1 109898983 4174432 3256067..3256786 1 NC_008228.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 3256786 4174432 Patl_2672 Pseudoalteromonas atlantica T6c F0F1 ATP synthase subunit A YP_662238.1 3256067 D 342610 CDS YP_662239.1 109898984 4174433 3256786..3257064 1 NC_008228.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 3257064 4174433 Patl_2673 Pseudoalteromonas atlantica T6c F0F1 ATP synthase subunit C YP_662239.1 3256786 D 342610 CDS YP_662240.1 109898985 4174434 3257068..3257976 1 NC_008228.1 TIGRFAM: ATP synthase F0, B subunit; PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: mba:Mbar_A3100 hypothetical protein; ATP synthase F0 subunit B 3257976 4174434 Patl_2674 Pseudoalteromonas atlantica T6c ATP synthase F0 subunit B YP_662240.1 3257068 D 342610 CDS YP_662241.1 109898986 4174435 3258045..3259631 1 NC_008228.1 produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 3259631 4174435 Patl_2675 Pseudoalteromonas atlantica T6c F0F1 ATP synthase subunit alpha YP_662241.1 3258045 D 342610 CDS YP_662242.1 109898987 4174436 3259615..3260523 1 NC_008228.1 PFAM: H+-transporting two-sector ATPase, gamma subunit; KEGG: mac:MA2433 H(+)-transporting ATP synthase, subunit gamma; H+-transporting two-sector ATPase subunit gamma 3260523 4174436 Patl_2676 Pseudoalteromonas atlantica T6c H+-transporting two-sector ATPase subunit gamma YP_662242.1 3259615 D 342610 CDS YP_662243.1 109898988 4174437 3260762..3261124 1 NC_008228.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bja:bll5770 hypothetical protein; alkylhydroperoxidase 3261124 4174437 Patl_2677 Pseudoalteromonas atlantica T6c alkylhydroperoxidase YP_662243.1 3260762 D 342610 CDS YP_662244.1 109898989 4174438 3261566..3263113 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein GAF; KEGG: dar:Daro_3445 PAS:GGDEF; GAF sensor-containing diguanylate cyclase 3263113 4174438 Patl_2678 Pseudoalteromonas atlantica T6c GAF sensor-containing diguanylate cyclase YP_662244.1 3261566 D 342610 CDS YP_662245.1 109898990 4174439 complement(3263133..3264146) 1 NC_008228.1 PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: pha:PSHAa1771 GalR repressor of contiguous operon, likely to bind a galactoside; LacI family transcriptional regulator 3264146 4174439 Patl_2679 Pseudoalteromonas atlantica T6c LacI family transcriptional regulator YP_662245.1 3263133 R 342610 CDS YP_662246.1 109898991 4174440 complement(3264161..3265588) 1 NC_008228.1 PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_3738 hypothetical protein; major facilitator superfamily transporter 3265588 4174440 Patl_2680 Pseudoalteromonas atlantica T6c major facilitator superfamily transporter YP_662246.1 3264161 R 342610 CDS YP_662247.1 109898992 4174441 complement(3265604..3266611) 1 NC_008228.1 PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: pha:PSHAa1771 GalR repressor of contiguous operon, likely to bind a galactoside; LacI family transcriptional regulator 3266611 4174441 Patl_2681 Pseudoalteromonas atlantica T6c LacI family transcriptional regulator YP_662247.1 3265604 R 342610 CDS YP_662248.1 109898993 4174442 complement(3266618..3267838) 1 NC_008228.1 PFAM: Aldose 1-epimerase; KEGG: rba:RB6537 aldose 1-epimerase; aldose 1-epimerase 3267838 4174442 Patl_2682 Pseudoalteromonas atlantica T6c aldose 1-epimerase YP_662248.1 3266618 R 342610 CDS YP_662249.1 109898994 4174443 complement(3268064..3269632) 1 NC_008228.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pha:PSHAa1768 sodium/hexose cotransport protein; SSS family solute/sodium (Na+) symporter 3269632 4174443 Patl_2683 Pseudoalteromonas atlantica T6c SSS family solute/sodium (Na+) symporter YP_662249.1 3268064 R 342610 CDS YP_662250.1 109898995 4174444 complement(3269938..3270702) 1 NC_008228.1 PFAM: protein of unknown function DUF1080; KEGG: rba:RB1109 putative multi-domain protein; hypothetical protein 3270702 4174444 Patl_2684 Pseudoalteromonas atlantica T6c hypothetical protein YP_662250.1 3269938 R 342610 CDS YP_662251.1 109898996 4174445 complement(3270772..3271371) 1 NC_008228.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: atc:AGR_L_978 hypothetical protein; twin-arginine translocation pathway signal protein 3271371 4174445 Patl_2685 Pseudoalteromonas atlantica T6c twin-arginine translocation pathway signal protein YP_662251.1 3270772 R 342610 CDS YP_662252.1 109898997 4174446 complement(3271374..3273059) 1 NC_008228.1 PFAM: glucose-methanol-choline oxidoreductase; KEGG: atc:AGR_L_980 hypothetical protein; glucose-methanol-choline oxidoreductase 3273059 4174446 Patl_2686 Pseudoalteromonas atlantica T6c glucose-methanol-choline oxidoreductase YP_662252.1 3271374 R 342610 CDS YP_662253.1 109898998 4174447 complement(3273127..3274032) 1 NC_008228.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Xylose isomerase-like TIM barrel; KEGG: rba:RB12073 hypothetical protein; twin-arginine translocation pathway signal protein 3274032 4174447 Patl_2687 Pseudoalteromonas atlantica T6c twin-arginine translocation pathway signal protein YP_662253.1 3273127 R 342610 CDS YP_662254.1 109898999 4174448 complement(3274025..3275245) 1 NC_008228.1 PFAM: proton/sugar symporter, LacY nucleoside:H+ symporter major facilitator superfamily MFS_1; KEGG: ecs:ECs2901 putative nucleoside permease protein; nucleoside:H+ symporter 3275245 4174448 Patl_2688 Pseudoalteromonas atlantica T6c nucleoside:H+ symporter YP_662254.1 3274025 R 342610 CDS YP_662255.1 109899000 4174449 complement(3275368..3276420) 1 NC_008228.1 PFAM: AP endonuclease 2-like Xylose isomerase-like TIM barrel; KEGG: atc:AGR_L_986 hypothetical protein; xylose isomerase-like TIM barrel domain-containing protein 3276420 4174449 Patl_2689 Pseudoalteromonas atlantica T6c xylose isomerase-like TIM barrel domain-containing protein YP_662255.1 3275368 R 342610 CDS YP_662256.1 109899001 4174450 complement(3276575..3277762) 1 NC_008228.1 PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: ccr:CC1630 oxidoreductase, Gfo/Idh/MocA family; oxidoreductase-like protein 3277762 4174450 Patl_2690 Pseudoalteromonas atlantica T6c oxidoreductase-like protein YP_662256.1 3276575 R 342610 CDS YP_662257.1 109899002 4174451 3278058..3279065 1 NC_008228.1 PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: ppr:PBPRA0256 putative transcriptional repressor, LacI family; LacI family transcriptional regulator 3279065 4174451 Patl_2691 Pseudoalteromonas atlantica T6c LacI family transcriptional regulator YP_662257.1 3278058 D 342610 CDS YP_662258.1 109899003 4174452 3279114..3280016 1 NC_008228.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Xylose isomerase-like TIM barrel; KEGG: bja:bll7636 hypothetical protein; twin-arginine translocation pathway signal protein 3280016 4174452 Patl_2692 Pseudoalteromonas atlantica T6c twin-arginine translocation pathway signal protein YP_662258.1 3279114 D 342610 CDS YP_662259.1 109899004 4174453 complement(3280154..3280840) 1 NC_008228.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: ret:RHE_PE00101 probable transcriptional regulator protein, GntR family; GntR family transcriptional regulator 3280840 4174453 Patl_2693 Pseudoalteromonas atlantica T6c GntR family transcriptional regulator YP_662259.1 3280154 R 342610 CDS YP_662260.1 109899005 4174454 3281367..3284204 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3737 TonB-dependent receptor; TonB-dependent receptor 3284204 4174454 Patl_2694 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_662260.1 3281367 D 342610 CDS YP_662261.1 109899006 4174455 3284278..3285738 1 NC_008228.1 PFAM: sulfatase; KEGG: rba:RB5295 heparan N-sulfatase; sulfatase 3285738 4174455 Patl_2695 Pseudoalteromonas atlantica T6c sulfatase YP_662261.1 3284278 D 342610 CDS YP_662262.1 109899007 4174456 complement(3285837..3286307) 1 NC_008228.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vvu:VV20941 histone acetyltransferase HPA2; N-acetyltransferase GCN5 3286307 4174456 Patl_2696 Pseudoalteromonas atlantica T6c N-acetyltransferase GCN5 YP_662262.1 3285837 R 342610 CDS YP_662263.1 109899008 4174457 3286684..3287847 1 NC_008228.1 hypothetical protein 3287847 4174457 Patl_2697 Pseudoalteromonas atlantica T6c hypothetical protein YP_662263.1 3286684 D 342610 CDS YP_662264.1 109899009 4174458 3287847..3288890 1 NC_008228.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3288890 4174458 Patl_2698 Pseudoalteromonas atlantica T6c glyoxalase/bleomycin resistance protein/dioxygenase YP_662264.1 3287847 D 342610 CDS YP_662265.1 109899010 4174459 3288916..3289614 1 NC_008228.1 PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: mag:amb4369 transcriptional activatory protein AadR; Crp/FNR family transcriptional regulator 3289614 4174459 Patl_2699 Pseudoalteromonas atlantica T6c Crp/FNR family transcriptional regulator YP_662265.1 3288916 D 342610 CDS YP_662266.1 109899011 4174460 3289752..3290318 1 NC_008228.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3290318 4174460 Patl_2700 Pseudoalteromonas atlantica T6c glyoxalase/bleomycin resistance protein/dioxygenase YP_662266.1 3289752 D 342610 CDS YP_662267.1 109899012 4174461 3290570..3293038 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2138 TonB-dependent receptor; TonB-dependent receptor, plug 3293038 4174461 Patl_2701 Pseudoalteromonas atlantica T6c TonB-dependent receptor, plug YP_662267.1 3290570 D 342610 CDS YP_662268.1 109899013 4174462 complement(3293181..3294563) 1 NC_008228.1 PFAM: Alkaline phosphatase; KEGG: pfo:Pfl_0461 phosphodiesterase/alkaline phosphatase D-like; alkaline phosphatase 3294563 4174462 Patl_2702 Pseudoalteromonas atlantica T6c alkaline phosphatase YP_662268.1 3293181 R 342610 CDS YP_662269.1 109899014 4174463 3294938..3295957 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: pha:PSHAb0368 putative GGDEF domain membrane protein; diguanylate cyclase 3295957 4174463 Patl_2703 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_662269.1 3294938 D 342610 CDS YP_662270.1 109899015 4174464 complement(3296032..3297270) 1 NC_008228.1 PFAM: AFG1-like ATPase; KEGG: son:SO3756 hypothetical ATPase; AFG1-like ATPase 3297270 4174464 Patl_2704 Pseudoalteromonas atlantica T6c AFG1-like ATPase YP_662270.1 3296032 R 342610 CDS YP_662271.1 109899016 4174465 complement(3297402..3298319) 1 NC_008228.1 PFAM: alpha/beta hydrolase fold; KEGG: rpa:RPA3731 alpha/beta hydrolase fold:esterase/lipase/thioesterase, active site; alpha/beta hydrolase fold protein 3298319 4174465 Patl_2705 Pseudoalteromonas atlantica T6c alpha/beta hydrolase fold protein YP_662271.1 3297402 R 342610 CDS YP_662272.1 109899017 4174466 complement(3298418..3298855) 1 NC_008228.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily; KEGG: eli:ELI_05475 hypothetical protein; hypothetical protein 3298855 4174466 Patl_2706 Pseudoalteromonas atlantica T6c hypothetical protein YP_662272.1 3298418 R 342610 CDS YP_662273.1 109899018 4174467 3299350..3300297 1 NC_008228.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: rso:RS05452 putative transmembrane protein; 2-nitropropane dioxygenase 3300297 4174467 Patl_2707 Pseudoalteromonas atlantica T6c 2-nitropropane dioxygenase YP_662273.1 3299350 D 342610 CDS YP_662274.1 109899019 4174468 complement(3300337..3300648) 1 NC_008228.1 PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: cvi:CV0244 hypothetical protein; ethyl tert-butyl ether degradation EthD 3300648 4174468 Patl_2708 Pseudoalteromonas atlantica T6c ethyl tert-butyl ether degradation EthD YP_662274.1 3300337 R 342610 CDS YP_662275.1 109899020 4174469 complement(3300876..3301226) 1 NC_008228.1 hypothetical protein 3301226 4174469 Patl_2709 Pseudoalteromonas atlantica T6c hypothetical protein YP_662275.1 3300876 R 342610 CDS YP_662276.1 109899021 4174470 complement(3301284..3302693) 1 NC_008228.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: amine oxidase FAD dependent oxidoreductase; KEGG: baa:BA_2428 flavin containing amine oxidase; twin-arginine translocation pathway signal protein 3302693 4174470 Patl_2710 Pseudoalteromonas atlantica T6c twin-arginine translocation pathway signal protein YP_662276.1 3301284 R 342610 CDS YP_662277.1 109899022 4174471 complement(3302821..3305109) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_2088 TonB-dependent receptor; TonB-dependent receptor, plug 3305109 4174471 Patl_2711 Pseudoalteromonas atlantica T6c TonB-dependent receptor, plug YP_662277.1 3302821 R 342610 CDS YP_662278.1 109899023 4174472 complement(3305413..3306477) 1 NC_008228.1 PFAM: protein of unknown function DUF1001; KEGG: cya:CYA_2044 CpeT protein; hypothetical protein 3306477 4174472 Patl_2712 Pseudoalteromonas atlantica T6c hypothetical protein YP_662278.1 3305413 R 342610 CDS YP_662279.1 109899024 4174473 complement(3306493..3307653) 1 NC_008228.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: oih:OB2671 hypothetical protein; alpha-methylacyl-CoA racemase 3307653 4174473 Patl_2713 Pseudoalteromonas atlantica T6c alpha-methylacyl-CoA racemase YP_662279.1 3306493 R 342610 CDS YP_662280.1 109899025 4174474 complement(3307704..3308894) 1 NC_008228.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bpm:BURPS1710b_0637 CaiB/BaiF family protein; L-carnitine dehydratase/bile acid-inducible protein F 3308894 4174474 Patl_2714 Pseudoalteromonas atlantica T6c L-carnitine dehydratase/bile acid-inducible protein F YP_662280.1 3307704 R 342610 CDS YP_662281.1 109899026 4174475 complement(3308993..3310168) 1 NC_008228.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: fra:Francci3_2430 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase-like protein 3310168 4174475 Patl_2715 Pseudoalteromonas atlantica T6c acyl-CoA dehydrogenase-like protein YP_662281.1 3308993 R 342610 CDS YP_662282.1 109899027 4174476 complement(3310185..3310703) 1 NC_008228.1 PFAM: MaoC-like dehydratase; KEGG: yps:YPTB1925 putative transcription regulatory protein; MaoC-like dehydratase 3310703 4174476 Patl_2716 Pseudoalteromonas atlantica T6c MaoC-like dehydratase YP_662282.1 3310185 R 342610 CDS YP_662283.1 109899028 4174477 complement(3310723..3311550) 1 NC_008228.1 PFAM: HpcH/HpaI aldolase; KEGG: hma:rrnB0257 citrate lyase beta chain; citrate lyase 3311550 4174477 Patl_2717 Pseudoalteromonas atlantica T6c citrate lyase YP_662283.1 3310723 R 342610 CDS YP_662284.1 109899029 4174478 complement(3311547..3312443) 1 NC_008228.1 PFAM: polysaccharide deacetylase; KEGG: pfl:PFL_4366 polysaccharide deacetylase family protein; polysaccharide deacetylase 3312443 4174478 Patl_2718 Pseudoalteromonas atlantica T6c polysaccharide deacetylase YP_662284.1 3311547 R 342610 CDS YP_662285.1 109899030 4174479 complement(3312521..3313363) 1 NC_008228.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mac:MA0415 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase; short-chain dehydrogenase/reductase SDR 3313363 4174479 Patl_2719 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_662285.1 3312521 R 342610 CDS YP_662286.1 109899031 4174480 complement(3313372..3313680) 1 NC_008228.1 hypothetical protein 3313680 4174480 Patl_2720 Pseudoalteromonas atlantica T6c hypothetical protein YP_662286.1 3313372 R 342610 CDS YP_662287.1 109899032 4174481 complement(3314007..3314195) 1 NC_008228.1 TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin, Txe/YoeB; KEGG: ilo:IL0286 RelE-like protein; addiction module antitoxin 3314195 4174481 Patl_2721 Pseudoalteromonas atlantica T6c addiction module antitoxin YP_662287.1 3314007 R 342610 CDS YP_662288.1 109899033 4174482 complement(3314568..3315020) 1 NC_008228.1 hypothetical protein 3315020 4174482 Patl_2722 Pseudoalteromonas atlantica T6c hypothetical protein YP_662288.1 3314568 R 342610 CDS YP_662289.1 109899034 4174483 3315264..3316163 1 NC_008228.1 TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: pae:PA3242 probable lauroyl acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 3316163 4174483 Patl_2723 Pseudoalteromonas atlantica T6c lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YP_662289.1 3315264 D 342610 CDS YP_662290.1 109899035 4174485 complement(3316948..3319122) 1 NC_008228.1 PFAM: sulfatase; KEGG: rba:RB695 N-acetyl-galactosamine-6-sulfatase (GALNS); sulfatase 3319122 4174485 Patl_2725 Pseudoalteromonas atlantica T6c sulfatase YP_662290.1 3316948 R 342610 CDS YP_662291.1 109899036 4174486 3319805..3320665 1 NC_008228.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: ppr:PBPRA0124 putative MadN protein; hypothetical protein 3320665 4174486 Patl_2726 Pseudoalteromonas atlantica T6c hypothetical protein YP_662291.1 3319805 D 342610 CDS YP_662292.1 109899037 4174487 complement(3320724..3321206) 1 NC_008228.1 KEGG: sil:SPO2303 hypothetical protein; hypothetical protein 3321206 4174487 Patl_2727 Pseudoalteromonas atlantica T6c hypothetical protein YP_662292.1 3320724 R 342610 CDS YP_662293.1 109899038 4174488 complement(3321371..3323257) 1 NC_008228.1 KEGG: cps:CPS_2637 hypothetical protein; hypothetical protein 3323257 4174488 Patl_2728 Pseudoalteromonas atlantica T6c hypothetical protein YP_662293.1 3321371 R 342610 CDS YP_662294.1 109899039 4174489 complement(3323774..3324151) 1 NC_008228.1 hypothetical protein 3324151 4174489 Patl_2729 Pseudoalteromonas atlantica T6c hypothetical protein YP_662294.1 3323774 R 342610 CDS YP_662295.1 109899040 4174490 complement(3324148..3325416) 1 NC_008228.1 PFAM: putative methyltransferase UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: syf:Synpcc7942_2054 hypothetical protein; type 12 methyltransferase 3325416 4174490 Patl_2730 Pseudoalteromonas atlantica T6c type 12 methyltransferase YP_662295.1 3324148 R 342610 CDS YP_662296.1 109899041 4174491 complement(3325416..3326144) 1 NC_008228.1 hypothetical protein 3326144 4174491 Patl_2731 Pseudoalteromonas atlantica T6c hypothetical protein YP_662296.1 3325416 R 342610 CDS YP_662297.1 109899042 4174492 3326478..3327137 1 NC_008228.1 PFAM: isochorismatase hydrolase; KEGG: nph:NP6214A homolog 1 to N-carbamoylsarcosine amidase; isochorismatase hydrolase 3327137 4174492 Patl_2732 Pseudoalteromonas atlantica T6c isochorismatase hydrolase YP_662297.1 3326478 D 342610 CDS YP_662298.1 109899043 4174493 3327340..3328353 1 NC_008228.1 PFAM: polysaccharide deacetylase; KEGG: cyb:CYB_1488 polysaccharide deacetylase family protein; polysaccharide deacetylase 3328353 4174493 Patl_2733 Pseudoalteromonas atlantica T6c polysaccharide deacetylase YP_662298.1 3327340 D 342610 CDS YP_662299.1 109899044 4174494 3328353..3329276 1 NC_008228.1 PFAM: polysaccharide deacetylase; KEGG: reu:Reut_B4195 polysaccharide deacetylase; polysaccharide deacetylase 3329276 4174494 Patl_2734 Pseudoalteromonas atlantica T6c polysaccharide deacetylase YP_662299.1 3328353 D 342610 CDS YP_662300.1 109899045 4174495 complement(3329433..3329960) 1 NC_008228.1 KEGG: gsu:GSU0198 hypothetical protein; hypothetical protein 3329960 4174495 Patl_2735 Pseudoalteromonas atlantica T6c hypothetical protein YP_662300.1 3329433 R 342610 CDS YP_662301.1 109899046 4174496 3330182..3330622 1 NC_008228.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_03985 histone acetyltransferase HPA2/related acetyltransferase; N-acetyltransferase GCN5 3330622 4174496 Patl_2736 Pseudoalteromonas atlantica T6c N-acetyltransferase GCN5 YP_662301.1 3330182 D 342610 CDS YP_662302.1 109899047 4174497 3330619..3330873 1 NC_008228.1 hypothetical protein 3330873 4174497 Patl_2737 Pseudoalteromonas atlantica T6c hypothetical protein YP_662302.1 3330619 D 342610 CDS YP_662303.1 109899048 4174498 complement(3331581..3332135) 1 NC_008228.1 KEGG: lla:L130023 unknown protein; hypothetical protein 3332135 4174498 Patl_2738 Pseudoalteromonas atlantica T6c hypothetical protein YP_662303.1 3331581 R 342610 CDS YP_662304.1 109899049 4174499 complement(3332220..3332648) 1 NC_008228.1 hypothetical protein 3332648 4174499 Patl_2739 Pseudoalteromonas atlantica T6c hypothetical protein YP_662304.1 3332220 R 342610 CDS YP_662305.1 109899050 4174500 3332780..3333988 1 NC_008228.1 PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase; transposase, IS4 3333988 4174500 Patl_2740 Pseudoalteromonas atlantica T6c transposase, IS4 YP_662305.1 3332780 D 342610 CDS YP_662306.1 109899051 4174501 complement(3334101..3334400) 1 NC_008228.1 hypothetical protein 3334400 4174501 Patl_2741 Pseudoalteromonas atlantica T6c hypothetical protein YP_662306.1 3334101 R 342610 CDS YP_662307.1 109899052 4174502 complement(3334527..3335096) 1 NC_008228.1 KEGG: ana:all2200 unknown protein; hypothetical protein 3335096 4174502 Patl_2742 Pseudoalteromonas atlantica T6c hypothetical protein YP_662307.1 3334527 R 342610 CDS YP_662308.1 109899053 4174503 complement(3335138..3335974) 1 NC_008228.1 KEGG: rso:RSc2612 hypothetical protein; hypothetical protein 3335974 4174503 Patl_2743 Pseudoalteromonas atlantica T6c hypothetical protein YP_662308.1 3335138 R 342610 CDS YP_662309.1 109899054 4174504 3336143..3337351 1 NC_008228.1 PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase; transposase, IS4 3337351 4174504 Patl_2744 Pseudoalteromonas atlantica T6c transposase, IS4 YP_662309.1 3336143 D 342610 CDS YP_662310.1 109899055 4174505 complement(3337431..3337745) 1 NC_008228.1 hypothetical protein 3337745 4174505 Patl_2745 Pseudoalteromonas atlantica T6c hypothetical protein YP_662310.1 3337431 R 342610 CDS YP_662311.1 109899056 4174506 complement(3337926..3338465) 1 NC_008228.1 hypothetical protein 3338465 4174506 Patl_2746 Pseudoalteromonas atlantica T6c hypothetical protein YP_662311.1 3337926 R 342610 CDS YP_662312.1 109899057 4174507 complement(3338573..3339400) 1 NC_008228.1 KEGG: ftu:FTT0496 hypothetical protein; hypothetical protein 3339400 4174507 Patl_2747 Pseudoalteromonas atlantica T6c hypothetical protein YP_662312.1 3338573 R 342610 CDS YP_662313.1 109899058 4174508 complement(3339519..3340361) 1 NC_008228.1 KEGG: ade:Adeh_2330 hypothetical protein; hypothetical protein 3340361 4174508 Patl_2748 Pseudoalteromonas atlantica T6c hypothetical protein YP_662313.1 3339519 R 342610 CDS YP_662314.1 109899059 4174509 3340461..3340700 1 NC_008228.1 hypothetical protein 3340700 4174509 Patl_2749 Pseudoalteromonas atlantica T6c hypothetical protein YP_662314.1 3340461 D 342610 CDS YP_662315.1 109899060 4174510 complement(3340947..3341930) 1 NC_008228.1 KEGG: syn:sll1378 periplasmic protein, function unknown; hypothetical protein 3341930 4174510 Patl_2750 Pseudoalteromonas atlantica T6c hypothetical protein YP_662315.1 3340947 R 342610 CDS YP_662316.1 109899061 4174511 complement(3341927..3342343) 1 NC_008228.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily; KEGG: gme:Gmet_2234 thioesterase superfamily; hypothetical protein 3342343 4174511 Patl_2751 Pseudoalteromonas atlantica T6c hypothetical protein YP_662316.1 3341927 R 342610 CDS YP_662317.1 109899062 4174512 complement(3342343..3343125) 1 NC_008228.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: tte:TTE0544 Enoyl-CoA hydratase/carnithine racemase; enoyl-CoA hydratase/isomerase 3343125 4174512 Patl_2752 Pseudoalteromonas atlantica T6c enoyl-CoA hydratase/isomerase YP_662317.1 3342343 R 342610 CDS YP_662318.1 109899063 4174513 3343247..3344143 1 NC_008228.1 hypothetical protein 3344143 4174513 Patl_2753 Pseudoalteromonas atlantica T6c hypothetical protein YP_662318.1 3343247 D 342610 CDS YP_662319.1 109899064 4174514 complement(3344270..3344716) 1 NC_008228.1 KEGG: ana:all5013 unknown protein; hypothetical protein 3344716 4174514 Patl_2754 Pseudoalteromonas atlantica T6c hypothetical protein YP_662319.1 3344270 R 342610 CDS YP_662320.1 109899065 4174515 complement(3344890..3345699) 1 NC_008228.1 KEGG: bha:BH2279 hypothetical protein; hypothetical protein 3345699 4174515 Patl_2755 Pseudoalteromonas atlantica T6c hypothetical protein YP_662320.1 3344890 R 342610 CDS YP_662321.1 109899066 4174516 complement(3345789..3348014) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0936 TonB-dependent receptor; TonB-dependent receptor, plug 3348014 4174516 Patl_2756 Pseudoalteromonas atlantica T6c TonB-dependent receptor, plug YP_662321.1 3345789 R 342610 CDS YP_662322.1 109899067 4174517 3348762..3350633 1 NC_008228.1 KEGG: lxx:Lxx11970 hemagglutinin/hemolysin-related protein; hypothetical protein 3350633 4174517 Patl_2757 Pseudoalteromonas atlantica T6c hypothetical protein YP_662322.1 3348762 D 342610 CDS YP_662323.1 109899068 4174518 3350683..3351270 1 NC_008228.1 TIGRFAM: PEP motif putative anchor-like; KEGG: dar:Daro_2686 protein of unknown function DUF1555; PEP domain-containing protein 3351270 4174518 Patl_2758 Pseudoalteromonas atlantica T6c PEP domain-containing protein YP_662323.1 3350683 D 342610 CDS YP_662324.1 109899069 4174519 complement(3351350..3352342) 1 NC_008228.1 PFAM: Alcohol dehydrogenase, zinc-binding; KEGG: vvu:VV20507 putative NADP-dependent oxidoreductase; zinc-binding alcohol dehydrogenase 3352342 4174519 Patl_2759 Pseudoalteromonas atlantica T6c zinc-binding alcohol dehydrogenase YP_662324.1 3351350 R 342610 CDS YP_662325.1 109899070 4174520 complement(3352383..3353030) 1 NC_008228.1 PFAM: glutathione S-transferase-like; KEGG: ava:Ava_5011 glutathione S-transferase-like; glutathione S-transferase-like protein 3353030 4174520 Patl_2760 Pseudoalteromonas atlantica T6c glutathione S-transferase-like protein YP_662325.1 3352383 R 342610 CDS YP_662326.1 109899071 4174521 complement(3353124..3353690) 1 NC_008228.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: rba:RB8432 probable fusion protein; carboxymuconolactone decarboxylase 3353690 4174521 Patl_2761 Pseudoalteromonas atlantica T6c carboxymuconolactone decarboxylase YP_662326.1 3353124 R 342610 CDS YP_662327.1 109899072 4174522 complement(3353762..3354751) 1 NC_008228.1 PFAM: pyruvate carboxyltransferase; KEGG: aci:ACIAD2820 putative hydroxymethylglutaryl-CoA lyase; pyruvate carboxyltransferase 3354751 4174522 Patl_2762 Pseudoalteromonas atlantica T6c pyruvate carboxyltransferase YP_662327.1 3353762 R 342610 CDS YP_662328.1 109899073 4174523 3355078..3356277 1 NC_008228.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ppu:PP3393 CaiB/BaiF family protein; L-carnitine dehydratase/bile acid-inducible protein F 3356277 4174523 Patl_2763 Pseudoalteromonas atlantica T6c L-carnitine dehydratase/bile acid-inducible protein F YP_662328.1 3355078 D 342610 CDS YP_662329.1 109899074 4174524 complement(3356551..3357216) 1 NC_008228.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase-like; KEGG: bja:blr0495 3-isopropylmalate dehydratase small subunit; 3-isopropylmalate dehydratase small subunit 3357216 4174524 Patl_2764 Pseudoalteromonas atlantica T6c 3-isopropylmalate dehydratase small subunit YP_662329.1 3356551 R 342610 CDS YP_662330.1 109899075 4174525 complement(3357216..3358619) 1 NC_008228.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 3358619 4174525 Patl_2765 Pseudoalteromonas atlantica T6c isopropylmalate isomerase large subunit YP_662330.1 3357216 R 342610 CDS YP_662331.1 109899076 4174526 complement(3358624..3359562) 1 NC_008228.1 PFAM: alpha/beta hydrolase fold; KEGG: bbr:BB1247 putative hydrolase; alpha/beta hydrolase fold protein 3359562 4174526 Patl_2766 Pseudoalteromonas atlantica T6c alpha/beta hydrolase fold protein YP_662331.1 3358624 R 342610 CDS YP_662332.1 109899077 4174527 complement(3359567..3361153) 1 NC_008228.1 PFAM: FAD linked oxidase-like; KEGG: bur:Bcep18194_A3821 FAD linked oxidase-like; FAD linked oxidase-like protein 3361153 4174527 Patl_2767 Pseudoalteromonas atlantica T6c FAD linked oxidase-like protein YP_662332.1 3359567 R 342610 CDS YP_662333.1 109899078 4174528 3361380..3362153 1 NC_008228.1 PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: bbr:BB4084 putative GntR-family transcriptional regulator; GntR family transcriptional regulator 3362153 4174528 Patl_2768 Pseudoalteromonas atlantica T6c GntR family transcriptional regulator YP_662333.1 3361380 D 342610 CDS YP_662334.1 109899079 4174529 complement(3362305..3362994) 1 NC_008228.1 hypothetical protein 3362994 4174529 Patl_2769 Pseudoalteromonas atlantica T6c hypothetical protein YP_662334.1 3362305 R 342610 CDS YP_662335.1 109899080 4174530 complement(3363671..3364372) 1 NC_008228.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ilo:IL2079 protein containing acetyltransferase (GNAT family) domain; N-acetyltransferase GCN5 3364372 4174530 Patl_2770 Pseudoalteromonas atlantica T6c N-acetyltransferase GCN5 YP_662335.1 3363671 R 342610 CDS YP_662336.1 109899081 4174531 complement(3364376..3364801) 1 NC_008228.1 PFAM: protein of unknown function DUF606; KEGG: ilo:IL2078 hypothetical protein; hypothetical protein 3364801 4174531 Patl_2771 Pseudoalteromonas atlantica T6c hypothetical protein YP_662336.1 3364376 R 342610 CDS YP_662337.1 109899082 4174532 complement(3364846..3365520) 1 NC_008228.1 PFAM: nitroreductase; KEGG: bba:Bd1162 nitroreductase; nitroreductase 3365520 4174532 Patl_2772 Pseudoalteromonas atlantica T6c nitroreductase YP_662337.1 3364846 R 342610 CDS YP_662338.1 109899083 4174533 complement(3365617..3366213) 1 NC_008228.1 PFAM: cyclic nucleotide-binding; KEGG: ilo:IL2076 catabolite gene activator protein; cyclic nucleotide-binding protein 3366213 4174533 Patl_2773 Pseudoalteromonas atlantica T6c cyclic nucleotide-binding protein YP_662338.1 3365617 R 342610 CDS YP_662339.1 109899084 4174534 complement(3366468..3366731) 1 NC_008228.1 hypothetical protein 3366731 4174534 Patl_2774 Pseudoalteromonas atlantica T6c hypothetical protein YP_662339.1 3366468 R 342610 CDS YP_662340.1 109899085 4174535 complement(3367607..3368836) 1 NC_008228.1 PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_3036 protein of unknown function DUF214; hypothetical protein 3368836 4174535 Patl_2775 Pseudoalteromonas atlantica T6c hypothetical protein YP_662340.1 3367607 R 342610 CDS YP_662341.1 109899086 4174536 complement(3368833..3369555) 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: gme:Gmet_3037 ABC transporter-related protein; ABC transporter-like protein 3369555 4174536 Patl_2776 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_662341.1 3368833 R 342610 CDS YP_662342.1 109899087 4174537 complement(3369555..3371024) 1 NC_008228.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: ade:Adeh_2972 secretion protein HlyD; RND family efflux transporter MFP subunit 3371024 4174537 Patl_2777 Pseudoalteromonas atlantica T6c RND family efflux transporter MFP subunit YP_662342.1 3369555 R 342610 CDS YP_662343.1 109899088 4174538 complement(3371259..3372299) 1 NC_008228.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: noc:Noc_1548 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase 3372299 4174538 Patl_2778 Pseudoalteromonas atlantica T6c succinylglutamate desuccinylase/aspartoacylase YP_662343.1 3371259 R 342610 CDS YP_662344.1 109899089 4174539 complement(3372302..3373210) 1 NC_008228.1 TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201 RimK-like ATP-grasp; KEGG: vvy:VVA1311 ribosomal protein S6 modification protein; alpha-L-glutamate ligase 3373210 4174539 Patl_2779 Pseudoalteromonas atlantica T6c alpha-L-glutamate ligase YP_662344.1 3372302 R 342610 CDS YP_662345.1 109899090 4174540 3373364..3374272 1 NC_008228.1 hypothetical protein 3374272 4174540 Patl_2780 Pseudoalteromonas atlantica T6c hypothetical protein YP_662345.1 3373364 D 342610 CDS YP_662346.1 109899091 4174541 complement(3374277..3375893) 1 NC_008228.1 PFAM: glucose-methanol-choline oxidoreductase GMC oxidoreductase; KEGG: ppr:PBPRA2212 hypothetical alcohol dehydrogenase; glucose-methanol-choline oxidoreductase 3375893 4174541 Patl_2781 Pseudoalteromonas atlantica T6c glucose-methanol-choline oxidoreductase YP_662346.1 3374277 R 342610 CDS YP_662347.1 109899092 4174542 3376235..3378409 1 NC_008228.1 PFAM: peptidase S9, prolyl oligopeptidase active site region peptidase S9A, prolyl oligopeptidase-like beta-propeller; KEGG: ilo:IL0145 prolyl endopeptidase; prolyl oligopeptidase 3378409 4174542 Patl_2782 Pseudoalteromonas atlantica T6c prolyl oligopeptidase YP_662347.1 3376235 D 342610 CDS YP_662348.1 109899093 4174543 complement(3378504..3378839) 1 NC_008228.1 hypothetical protein 3378839 4174543 Patl_2783 Pseudoalteromonas atlantica T6c hypothetical protein YP_662348.1 3378504 R 342610 CDS YP_662349.1 109899094 4174544 3379058..3379660 1 NC_008228.1 KEGG: tbd:Tbd_2342 hypothetical protein; hypothetical protein 3379660 4174544 Patl_2784 Pseudoalteromonas atlantica T6c hypothetical protein YP_662349.1 3379058 D 342610 CDS YP_662350.1 109899095 4174545 complement(3379691..3380629) 1 NC_008228.1 PFAM: Auxin Efflux Carrier; KEGG: vch:VCA0024 hypothetical protein; auxin efflux carrier 3380629 4174545 Patl_2785 Pseudoalteromonas atlantica T6c auxin efflux carrier YP_662350.1 3379691 R 342610 CDS YP_662351.1 109899096 4174546 3380954..3383092 1 NC_008228.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: son:SO3564 peptidyl-dipeptidase Dcp; peptidyl-dipeptidase Dcp 3383092 4174546 Patl_2786 Pseudoalteromonas atlantica T6c peptidyl-dipeptidase Dcp YP_662351.1 3380954 D 342610 CDS YP_662352.1 109899097 4174547 complement(3383276..3384610) 1 NC_008228.1 KEGG: cps:CPS_0854 amidohydrolase family protein; TIGRFAM: amidohydrolase; PFAM: peptidase M20 peptidase dimerisation; amidohydrolase 3384610 4174547 Patl_2787 Pseudoalteromonas atlantica T6c amidohydrolase YP_662352.1 3383276 R 342610 CDS YP_662353.1 109899098 4174548 3384872..3385750 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: cps:CPS_2699 transcription regulator, LysR family; LysR family transcriptional regulator 3385750 4174548 Patl_2788 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_662353.1 3384872 D 342610 CDS YP_662354.1 109899099 4174549 3385938..3386939 1 NC_008228.1 PFAM: protein of unknown function DUF1611; KEGG: rru:Rru_A2557 protein of unknown function DUF1611; hypothetical protein 3386939 4174549 Patl_2789 Pseudoalteromonas atlantica T6c hypothetical protein YP_662354.1 3385938 D 342610 CDS YP_662355.1 109899100 4174550 3387027..3388052 1 NC_008228.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: sil:SPO3606 mandelate racemase/muconate lactonizing enzyme family protein; mandelate racemase/muconate lactonizing-like protein 3388052 4174550 Patl_2790 Pseudoalteromonas atlantica T6c mandelate racemase/muconate lactonizing-like protein YP_662355.1 3387027 D 342610 CDS YP_662356.1 109899101 4174551 complement(3388132..3389250) 1 NC_008228.1 KEGG: pha:PSHAb0327 hypothetical protein; hypothetical protein 3389250 4174551 Patl_2791 Pseudoalteromonas atlantica T6c hypothetical protein YP_662356.1 3388132 R 342610 CDS YP_662357.1 109899102 4174552 complement(3389497..3391422) 1 NC_008228.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 3391422 4174552 Patl_2792 Pseudoalteromonas atlantica T6c glucosyltransferase MdoH YP_662357.1 3389497 R 342610 CDS YP_662358.1 109899103 4174553 complement(3391466..3393106) 1 NC_008228.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 3393106 mdoG 4174553 mdoG Pseudoalteromonas atlantica T6c glucan biosynthesis protein G YP_662358.1 3391466 R 342610 CDS YP_662359.1 109899104 4174554 complement(3394112..3394822) 1 NC_008228.1 Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 3394822 4174554 Patl_2794 Pseudoalteromonas atlantica T6c fatty acid metabolism regulator YP_662359.1 3394112 R 342610 CDS YP_662360.1 109899105 4174555 3395069..3396649 1 NC_008228.1 involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 3396649 nhaB 4174555 nhaB Pseudoalteromonas atlantica T6c sodium/proton antiporter YP_662360.1 3395069 D 342610 CDS YP_662361.1 109899106 4174556 3396731..3397246 1 NC_008228.1 PFAM: Disulphide bond formation protein DsbB; KEGG: cps:CPS_3513 disulfide bond formation protein B; disulfide bond formation protein DsbB 3397246 4174556 Patl_2796 Pseudoalteromonas atlantica T6c disulfide bond formation protein DsbB YP_662361.1 3396731 D 342610 CDS YP_662362.1 109899107 4174557 3397555..3399066 1 NC_008228.1 PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: pmm:PMM0425 hypothetical protein; deoxyribodipyrimidine photolyase-like protein 3399066 4174557 Patl_2797 Pseudoalteromonas atlantica T6c deoxyribodipyrimidine photolyase-like protein YP_662362.1 3397555 D 342610 CDS YP_662363.1 109899108 4174558 complement(3399242..3399736) 1 NC_008228.1 PFAM: protein of unknown function UPF0153; KEGG: cps:CPS_3515 hypothetical protein; hypothetical protein 3399736 4174558 Patl_2798 Pseudoalteromonas atlantica T6c hypothetical protein YP_662363.1 3399242 R 342610 CDS YP_662364.1 109899109 4174559 complement(3399729..3400115) 1 NC_008228.1 hypothetical protein 3400115 4174559 Patl_2799 Pseudoalteromonas atlantica T6c hypothetical protein YP_662364.1 3399729 R 342610 CDS YP_662365.1 109899110 4174560 complement(3400200..3400859) 1 NC_008228.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ecj:JW1169 predicted isomerase/hydrolase; fumarylacetoacetate (FAA) hydrolase 3400859 4174560 Patl_2800 Pseudoalteromonas atlantica T6c fumarylacetoacetate (FAA) hydrolase YP_662365.1 3400200 R 342610 CDS YP_662366.1 109899111 4174561 complement(3400860..3401855) 1 NC_008228.1 TIGRFAM: lytic murein transglycosylase; KEGG: pha:PSHAb0509 putative periplasmic lytic murein transglycosylase; lytic murein transglycosylase 3401855 4174561 Patl_2801 Pseudoalteromonas atlantica T6c lytic murein transglycosylase YP_662366.1 3400860 R 342610 CDS YP_662367.1 109899112 4174562 complement(3401919..3402206) 1 NC_008228.1 PFAM: protein of unknown function DUF709; KEGG: sfx:S1256 hypothetical protein; hypothetical protein 3402206 4174562 Patl_2802 Pseudoalteromonas atlantica T6c hypothetical protein YP_662367.1 3401919 R 342610 CDS YP_662368.1 109899113 4174563 complement(3402199..3403401) 1 NC_008228.1 TIGRFAM: ribonuclease D; PFAM: HRDC 3'-5' exonuclease; KEGG: yps:YPTB2058 ribonuclease D; ribonuclease D 3403401 4174563 Patl_2803 Pseudoalteromonas atlantica T6c ribonuclease D YP_662368.1 3402199 R 342610 CDS YP_662369.1 109899114 4174564 complement(3403450..3405108) 1 NC_008228.1 PFAM: AMP-dependent synthetase and ligase; KEGG: stm:STM1818 acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase); AMP-dependent synthetase and ligase 3405108 4174564 Patl_2804 Pseudoalteromonas atlantica T6c AMP-dependent synthetase and ligase YP_662369.1 3403450 R 342610 CDS YP_662370.1 109899115 4174565 complement(3405260..3406207) 1 NC_008228.1 PFAM: alpha/beta hydrolase fold PGAP1-like; KEGG: son:SO2582 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold protein 3406207 4174565 Patl_2805 Pseudoalteromonas atlantica T6c alpha/beta hydrolase fold protein YP_662370.1 3405260 R 342610 CDS YP_662371.1 109899116 4174566 complement(3406323..3406919) 1 NC_008228.1 TIGRFAM: outer membrane lipoprotein, Slp family; PFAM: outer membrane lipoprotein Slp; KEGG: ilo:IL1829 starvation-inducible outer membrane lipoprotein; Slp family outer membrane lipoprotein 3406919 4174566 Patl_2806 Pseudoalteromonas atlantica T6c Slp family outer membrane lipoprotein YP_662371.1 3406323 R 342610 CDS YP_662372.1 109899117 4174567 complement(3407117..3407428) 1 NC_008228.1 hypothetical protein 3407428 4174567 Patl_2807 Pseudoalteromonas atlantica T6c hypothetical protein YP_662372.1 3407117 R 342610 CDS YP_662373.1 109899118 4174568 complement(3407660..3408364) 1 NC_008228.1 PFAM: peptidase M22, glycoprotease; KEGG: pha:PSHAb0498 putative protease; peptidase M22, glycoprotease 3408364 4174568 Patl_2808 Pseudoalteromonas atlantica T6c peptidase M22, glycoprotease YP_662373.1 3407660 R 342610 CDS YP_662374.1 109899119 4174569 complement(3408361..3410484) 1 NC_008228.1 SMART: Helicase c2 DEAD/DEAH box helicase-like; KEGG: ppr:PBPRA1070 putative ATP-dependent helicase, DinG family; helicase c2 3410484 4174569 Patl_2809 Pseudoalteromonas atlantica T6c helicase c2 YP_662374.1 3408361 R 342610 CDS YP_662375.1 109899120 4174570 complement(3410618..3411970) 1 NC_008228.1 PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: eli:ELI_03145 alpha-amylase, putative; alpha amylase 3411970 4174570 Patl_2810 Pseudoalteromonas atlantica T6c alpha amylase YP_662375.1 3410618 R 342610 CDS YP_662376.1 109899121 4174571 complement(3412090..3413235) 1 NC_008228.1 KEGG: ddi:DDB0168484 hypothetical protein; hypothetical protein 3413235 4174571 Patl_2811 Pseudoalteromonas atlantica T6c hypothetical protein YP_662376.1 3412090 R 342610 CDS YP_662377.1 109899122 4174572 3413432..3414175 1 NC_008228.1 PFAM: flagellar L-ring protein; KEGG: vfi:VF1871 flagellar L-ring protein FlgH; flagellar L-ring protein 3414175 4174572 Patl_2812 Pseudoalteromonas atlantica T6c flagellar L-ring protein YP_662377.1 3413432 D 342610 CDS YP_662378.1 109899123 4174573 3414176..3415366 1 NC_008228.1 KEGG: cps:CPS_1468 putative lipoprotein; hypothetical protein 3415366 4174573 Patl_2813 Pseudoalteromonas atlantica T6c hypothetical protein YP_662378.1 3414176 D 342610 CDS YP_662379.1 109899124 4174574 complement(3415819..3416004) 1 NC_008228.1 PFAM: SEC-C motif; KEGG: tde:TDE1898 preprotein translocase, SecA subunit; SecC motif-containing protein 3416004 4174574 Patl_2814 Pseudoalteromonas atlantica T6c SecC motif-containing protein YP_662379.1 3415819 R 342610 CDS YP_662380.1 109899125 4174575 3416382..3417296 1 NC_008228.1 PFAM: homocysteine S-methyltransferase; KEGG: mlo:mlr1281 putative betaine-homocysteine S-methyltransferase; homocysteine S-methyltransferase 3417296 4174575 Patl_2815 Pseudoalteromonas atlantica T6c homocysteine S-methyltransferase YP_662380.1 3416382 D 342610 CDS YP_662381.1 109899126 4174576 complement(3417457..3417831) 1 NC_008228.1 hypothetical protein 3417831 4174576 Patl_2816 Pseudoalteromonas atlantica T6c hypothetical protein YP_662381.1 3417457 R 342610 CDS YP_662382.1 109899127 4174577 3418128..3418943 1 NC_008228.1 hypothetical protein 3418943 4174577 Patl_2817 Pseudoalteromonas atlantica T6c hypothetical protein YP_662382.1 3418128 D 342610 CDS YP_662383.1 109899128 4174578 3419195..3421357 1 NC_008228.1 PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: vch:VC1349 sensory box sensor histidine kinase/response regulator; periplasmic sensor hybrid histidine kinase 3421357 4174578 Patl_2818 Pseudoalteromonas atlantica T6c periplasmic sensor hybrid histidine kinase YP_662383.1 3419195 D 342610 CDS YP_662384.1 109899129 4174579 complement(3421492..3422076) 1 NC_008228.1 KEGG: ilo:IL1417 outer membrane protein, porin family; porin family outer membrane protein 3422076 4174579 Patl_2819 Pseudoalteromonas atlantica T6c porin family outer membrane protein YP_662384.1 3421492 R 342610 CDS YP_662385.1 109899130 4174580 3422370..3422870 1 NC_008228.1 KEGG: xcb:XC_1692 hypothetical protein; hypothetical protein 3422870 4174580 Patl_2820 Pseudoalteromonas atlantica T6c hypothetical protein YP_662385.1 3422370 D 342610 CDS YP_662386.1 109899131 4174581 complement(3423016..3423618) 1 NC_008228.1 KEGG: pca:Pcar_2559 hypothetical protein; hypothetical protein 3423618 4174581 Patl_2821 Pseudoalteromonas atlantica T6c hypothetical protein YP_662386.1 3423016 R 342610 CDS YP_662387.1 109899132 4174583 complement(3424746..3425015) 1 NC_008228.1 PFAM: protein of unknown function DUF1568; KEGG: son:SO4547 hypothetical protein; hypothetical protein 3425015 4174583 Patl_2823 Pseudoalteromonas atlantica T6c hypothetical protein YP_662387.1 3424746 R 342610 CDS YP_662388.1 109899133 4174584 complement(3425888..3426757) 1 NC_008228.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 pseudouridine synthase; KEGG: eca:ECA2291 putative RNA pseudouridylate synthase; pseudouridine synthase Rsu 3426757 4174584 Patl_2824 Pseudoalteromonas atlantica T6c pseudouridine synthase Rsu YP_662388.1 3425888 R 342610 CDS YP_662389.1 109899134 4174585 complement(3426757..3427509) 1 NC_008228.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: pha:PSHAa1341 hypothetical protein; putative transcriptional regulator 3427509 4174585 Patl_2825 Pseudoalteromonas atlantica T6c putative transcriptional regulator YP_662389.1 3426757 R 342610 CDS YP_662390.1 109899135 4174586 complement(3427510..3428367) 1 NC_008228.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: son:SO3015 putative segregation and condensation protein A; chromosome segregation and condensation protein ScpA 3428367 4174586 Patl_2826 Pseudoalteromonas atlantica T6c chromosome segregation and condensation protein ScpA YP_662390.1 3427510 R 342610 CDS YP_662391.1 109899136 4174587 complement(3428385..3429005) 1 NC_008228.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC-like; KEGG: yps:YPTB2134 hypothetical protein; Sua5/YciO/YrdC/YwlC family protein 3429005 4174587 Patl_2827 Pseudoalteromonas atlantica T6c Sua5/YciO/YrdC/YwlC family protein YP_662391.1 3428385 R 342610 CDS YP_662392.1 109899137 4174588 complement(3429038..3429904) 1 NC_008228.1 PFAM: PHP-like; SMART: Phosphoesterase PHP-like; KEGG: cps:CPS_3521 PHP domain protein; PHP-like protein 3429904 4174588 Patl_2828 Pseudoalteromonas atlantica T6c PHP-like protein YP_662392.1 3429038 R 342610 CDS YP_662393.1 109899138 4174589 3430347..3431981 1 NC_008228.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 3431981 4174589 Patl_2829 Pseudoalteromonas atlantica T6c anthranilate synthase component I YP_662393.1 3430347 D 342610 CDS YP_662394.1 109899139 4174590 3431981..3432661 1 NC_008228.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: yps:YPTB2129 anthranilate synthase component II; glutamine amidotransferase of anthranilate synthase 3432661 4174590 Patl_2830 Pseudoalteromonas atlantica T6c glutamine amidotransferase of anthranilate synthase YP_662394.1 3431981 D 342610 CDS YP_662395.1 109899140 4174591 3432671..3433693 1 NC_008228.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 3433693 trpD 4174591 trpD Pseudoalteromonas atlantica T6c anthranilate phosphoribosyltransferase YP_662395.1 3432671 D 342610 CDS YP_662396.1 109899141 4174592 3433704..3435110 1 NC_008228.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 3435110 4174592 Patl_2832 Pseudoalteromonas atlantica T6c bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_662396.1 3433704 D 342610 CDS YP_662397.1 109899142 4174593 3435165..3436352 1 NC_008228.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 3436352 4174593 Patl_2833 Pseudoalteromonas atlantica T6c tryptophan synthase subunit beta YP_662397.1 3435165 D 342610 CDS YP_662398.1 109899143 4174594 3436345..3437187 1 NC_008228.1 KEGG: vpa:VP1961 tryptophan synthase, alpha subunit; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase, alpha chain; tryptophan synthase subunit alpha 3437187 4174594 Patl_2834 Pseudoalteromonas atlantica T6c tryptophan synthase subunit alpha YP_662398.1 3436345 D 342610 CDS YP_662399.1 109899144 4174595 3437197..3437496 1 NC_008228.1 PFAM: YCII-related; KEGG: ppr:PBPRA2508 conserved hypothetical protein; hypothetical protein 3437496 4174595 Patl_2835 Pseudoalteromonas atlantica T6c hypothetical protein YP_662399.1 3437197 D 342610 CDS YP_662400.1 109899145 4174596 3437619..3438032 1 NC_008228.1 PFAM: Class I peptide chain release factor; KEGG: pae:PA0868 hypothetical protein; class I peptide chain release factor 3438032 4174596 Patl_2836 Pseudoalteromonas atlantica T6c class I peptide chain release factor YP_662400.1 3437619 D 342610 CDS YP_662401.1 109899146 4174597 3438192..3439154 1 NC_008228.1 KEGG: hch:HCH_02073 rhs family protein; hypothetical protein 3439154 4174597 Patl_2837 Pseudoalteromonas atlantica T6c hypothetical protein YP_662401.1 3438192 D 342610 CDS YP_662402.1 109899147 4174598 3439257..3442079 1 NC_008228.1 PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: neu:NE1444 TPR repeat; hypothetical protein 3442079 4174598 Patl_2838 Pseudoalteromonas atlantica T6c hypothetical protein YP_662402.1 3439257 D 342610 CDS YP_662403.1 109899148 4174599 3442258..3442533 1 NC_008228.1 PFAM: Propeptide, PepSY amd peptidase M4; peptidase 3442533 4174599 Patl_2839 Pseudoalteromonas atlantica T6c peptidase YP_662403.1 3442258 D 342610 CDS YP_662404.1 109899149 4174600 3442533..3443213 1 NC_008228.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: pha:PSHAa1283 response regulator in two-component regulatory system with PhoQ; two component transcriptional regulator 3443213 4174600 Patl_2840 Pseudoalteromonas atlantica T6c two component transcriptional regulator YP_662404.1 3442533 D 342610 CDS YP_662405.1 109899150 4174601 3443217..3444554 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region; KEGG: pha:PSHAa1282 sensory histidine kinase in two-component regulatory system with PhoP; sensor signal transduction histidine kinase 3444554 4174601 Patl_2841 Pseudoalteromonas atlantica T6c sensor signal transduction histidine kinase YP_662405.1 3443217 D 342610 CDS YP_662406.1 109899151 4174602 complement(3444617..3445726) 1 NC_008228.1 PFAM: MscS Mechanosensitive ion channel; KEGG: dps:DP2962 hypothetical protein; mechanosensitive ion channel protein MscS 3445726 4174602 Patl_2842 Pseudoalteromonas atlantica T6c mechanosensitive ion channel protein MscS YP_662406.1 3444617 R 342610 CDS YP_662407.1 109899152 4174603 complement(3446136..3446906) 1 NC_008228.1 KEGG: ilo:IL0094 TPR repeats containing protein; hypothetical protein 3446906 4174603 Patl_2843 Pseudoalteromonas atlantica T6c hypothetical protein YP_662407.1 3446136 R 342610 CDS YP_662408.1 109899153 4174604 complement(3447140..3449449) 1 NC_008228.1 KEGG: tfu:Tfu_1737 oxidoreductase alpha (molybdopterin) subunit; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region; oxidoreductase alpha (molybdopterin) subunit 3449449 4174604 Patl_2844 Pseudoalteromonas atlantica T6c oxidoreductase alpha (molybdopterin) subunit YP_662408.1 3447140 R 342610 CDS YP_662409.1 109899154 4174605 complement(3449524..3450387) 1 NC_008228.1 PFAM: formate dehydrogenase, subunit FdhD; KEGG: pub:SAR11_0681 formate dehydrogenase chain D; formate dehydrogenase subunit FdhD 3450387 4174605 Patl_2845 Pseudoalteromonas atlantica T6c formate dehydrogenase subunit FdhD YP_662409.1 3449524 R 342610 CDS YP_662410.1 109899155 4174606 complement(3450720..3451727) 1 NC_008228.1 PFAM: protein of unknown function DUF81; KEGG: cps:CPS_1011 hypothetical protein; hypothetical protein 3451727 4174606 Patl_2846 Pseudoalteromonas atlantica T6c hypothetical protein YP_662410.1 3450720 R 342610 CDS YP_662411.1 109899156 4174607 3451879..3452376 1 NC_008228.1 KEGG: hch:HCH_01348 integral membrane protein; hypothetical protein 3452376 4174607 Patl_2847 Pseudoalteromonas atlantica T6c hypothetical protein YP_662411.1 3451879 D 342610 CDS YP_662412.1 109899157 4174608 complement(3452408..3453529) 1 NC_008228.1 KEGG: bja:bll1370 hypothetical protein; hypothetical protein 3453529 4174608 Patl_2848 Pseudoalteromonas atlantica T6c hypothetical protein YP_662412.1 3452408 R 342610 CDS YP_662413.1 109899158 4174609 3453686..3454642 1 NC_008228.1 PFAM: beta-lactamase-like; KEGG: pmu:PM0039 arylsulfatase precursor; beta-lactamase-like protein 3454642 4174609 Patl_2849 Pseudoalteromonas atlantica T6c beta-lactamase-like protein YP_662413.1 3453686 D 342610 CDS YP_662414.1 109899159 4174610 complement(3454851..3455354) 1 NC_008228.1 KEGG: ppu:PP1756 hypothetical protein; hypothetical protein 3455354 4174610 Patl_2850 Pseudoalteromonas atlantica T6c hypothetical protein YP_662414.1 3454851 R 342610 CDS YP_662415.1 109899160 4174612 complement(3459320..3460303) 1 NC_008228.1 KEGG: ppu:PP3831 hypothetical protein; hypothetical protein 3460303 4174612 Patl_2853 Pseudoalteromonas atlantica T6c hypothetical protein YP_662415.1 3459320 R 342610 CDS YP_662416.1 109899161 4174613 3460510..3461055 1 NC_008228.1 PFAM: regulatory protein, TetR; KEGG: ppr:PBPRB1080 hypothetical protein; TetR family transcriptional regulator 3461055 4174613 Patl_2854 Pseudoalteromonas atlantica T6c TetR family transcriptional regulator YP_662416.1 3460510 D 342610 CDS YP_662417.1 109899162 4174614 3461042..3462124 1 NC_008228.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: ppr:PBPRB1079 hypothetical oxidoreductase protein; zinc-binding alcohol dehydrogenase 3462124 4174614 Patl_2855 Pseudoalteromonas atlantica T6c zinc-binding alcohol dehydrogenase YP_662417.1 3461042 D 342610 CDS YP_662418.1 109899163 4174615 complement(3462220..3463617) 1 NC_008228.1 hypothetical protein 3463617 4174615 Patl_2856 Pseudoalteromonas atlantica T6c hypothetical protein YP_662418.1 3462220 R 342610 CDS YP_662419.1 109899164 4174616 3463850..3464353 1 NC_008228.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_2464 acetyltransferase, GNAT family; N-acetyltransferase GCN5 3464353 4174616 Patl_2857 Pseudoalteromonas atlantica T6c N-acetyltransferase GCN5 YP_662419.1 3463850 D 342610 CDS YP_662420.1 109899165 4174617 3464503..3466470 1 NC_008228.1 KEGG: pst:PSPTO1001 hypothetical protein; hypothetical protein 3466470 4174617 Patl_2858 Pseudoalteromonas atlantica T6c hypothetical protein YP_662420.1 3464503 D 342610 CDS YP_662421.1 109899166 4174618 3466633..3468618 1 NC_008228.1 KEGG: dme:CG18730-PA CG18730 gene product from transcript CG18730-RA; PFAM: alpha amylase, catalytic region alpha amylase, C-terminal all-beta; SMART: Alpha amylase, catalytic subdomain; alpha-amylase 3468618 4174618 Patl_2859 Pseudoalteromonas atlantica T6c alpha-amylase YP_662421.1 3466633 D 342610 CDS YP_662422.1 109899167 4174619 complement(3468730..3469479) 1 NC_008228.1 PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: reu:Reut_B3533 regulatory protein GntR, HTH:UbiC transcription regulator-associated; GntR family transcriptional regulator 3469479 4174619 Patl_2860 Pseudoalteromonas atlantica T6c GntR family transcriptional regulator YP_662422.1 3468730 R 342610 CDS YP_662423.1 109899168 4174620 3469829..3471916 1 NC_008228.1 PFAM: glycoside hydrolase, family 31; KEGG: tfu:Tfu_1613 putative alpha-glucosidase; glycoside hydrolase 3471916 4174620 Patl_2861 Pseudoalteromonas atlantica T6c glycoside hydrolase YP_662423.1 3469829 D 342610 CDS YP_662424.1 109899169 4174621 3471944..3472495 1 NC_008228.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: bcl:ABC4045 TRAP-type transport system permease small protein; tripartite ATP-independent periplasmic transporter DctQ 3472495 4174621 Patl_2862 Pseudoalteromonas atlantica T6c tripartite ATP-independent periplasmic transporter DctQ YP_662424.1 3471944 D 342610 CDS YP_662425.1 109899170 4174622 3472497..3473783 1 NC_008228.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bcl:ABC4044 TRAP-type transport system permease large protein; TRAP dicarboxylate transporter subunit DctM 3473783 4174622 Patl_2863 Pseudoalteromonas atlantica T6c TRAP dicarboxylate transporter subunit DctM YP_662425.1 3472497 D 342610 CDS YP_662426.1 109899171 4174623 3473785..3474825 1 NC_008228.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: chy:CHY_1301 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 3474825 4174623 Patl_2864 Pseudoalteromonas atlantica T6c TRAP dicarboxylate transporter subunit DctP YP_662426.1 3473785 D 342610 CDS YP_662427.1 109899172 4174624 3475211..3477607 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: nar:Saro_2447 TonB-dependent receptor; TonB-dependent receptor 3477607 4174624 Patl_2865 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_662427.1 3475211 D 342610 CDS YP_662428.1 109899173 4174625 3477914..3478255 1 NC_008228.1 hypothetical protein 3478255 4174625 Patl_2866 Pseudoalteromonas atlantica T6c hypothetical protein YP_662428.1 3477914 D 342610 CDS YP_662429.1 109899174 4174626 complement(3478387..3479085) 1 NC_008228.1 PFAM: cation efflux protein; KEGG: ilo:IL0774 Co/Zn/Cd efflux system component; cation efflux protein 3479085 4174626 Patl_2867 Pseudoalteromonas atlantica T6c cation efflux protein YP_662429.1 3478387 R 342610 CDS YP_662430.1 109899175 4174627 3479152..3479541 1 NC_008228.1 PFAM: regulatory protein, MerR; KEGG: cps:CPS_1955 transcriptional regulator, MerR family; MerR family transcriptional regulator 3479541 4174627 Patl_2868 Pseudoalteromonas atlantica T6c MerR family transcriptional regulator YP_662430.1 3479152 D 342610 CDS YP_662431.1 109899176 4174628 complement(3479649..3482723) 1 NC_008228.1 PFAM: acriflavin resistance protein; KEGG: vpa:VPA0809 transporter, AcrB/D/F family; acriflavin resistance protein 3482723 4174628 Patl_2869 Pseudoalteromonas atlantica T6c acriflavin resistance protein YP_662431.1 3479649 R 342610 CDS YP_662432.1 109899177 4174629 complement(3482720..3483775) 1 NC_008228.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: vpa:VPA0808 putative periplasmic linker protein; RND family efflux transporter MFP subunit 3483775 4174629 Patl_2870 Pseudoalteromonas atlantica T6c RND family efflux transporter MFP subunit YP_662432.1 3482720 R 342610 CDS YP_662433.1 109899178 4174630 complement(3483775..3484848) 1 NC_008228.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: vpa:VPA0807 putative multidrug resistance protein; RND family efflux transporter MFP subunit 3484848 4174630 Patl_2871 Pseudoalteromonas atlantica T6c RND family efflux transporter MFP subunit YP_662433.1 3483775 R 342610 CDS YP_662434.1 109899179 4174631 3485020..3485739 1 NC_008228.1 PFAM: regulatory protein, TetR; KEGG: vch:VCA0767 transcriptional regulator, TetR family; TetR family transcriptional regulator 3485739 4174631 Patl_2872 Pseudoalteromonas atlantica T6c TetR family transcriptional regulator YP_662434.1 3485020 D 342610 CDS YP_662435.1 109899180 4174632 complement(3485818..3486213) 1 NC_008228.1 KEGG: cjr:CJE0004 hypothetical protein; hypothetical protein 3486213 4174632 Patl_2873 Pseudoalteromonas atlantica T6c hypothetical protein YP_662435.1 3485818 R 342610 CDS YP_662436.1 109899181 4174633 complement(3486216..3487589) 1 NC_008228.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: oxidoreductase, molybdopterin binding Mo-co oxidoreductase dimerisation domain; KEGG: vpa:VPA1143 putative molybdenum containing oxidoreductase; twin-arginine translocation pathway signal protein 3487589 4174633 Patl_2874 Pseudoalteromonas atlantica T6c twin-arginine translocation pathway signal protein YP_662436.1 3486216 R 342610 CDS YP_662437.1 109899182 4174634 complement(3487612..3488607) 1 NC_008228.1 PFAM: conserved hypothetical protein 698; KEGG: cte:CT0845 hypothetical protein; hypothetical protein 3488607 4174634 Patl_2875 Pseudoalteromonas atlantica T6c hypothetical protein YP_662437.1 3487612 R 342610 CDS YP_662438.1 109899183 4174635 complement(3488674..3489663) 1 NC_008228.1 KEGG: eli:ELI_03725 SyrP protein, putative; SyrP protein 3489663 4174635 Patl_2876 Pseudoalteromonas atlantica T6c SyrP protein YP_662438.1 3488674 R 342610 CDS YP_662439.1 109899184 4174636 complement(3489673..3490638) 1 NC_008228.1 PFAM: aldo/keto reductase; KEGG: eli:ELI_03720 aldehyde reductase; aldehyde reductase 3490638 4174636 Patl_2877 Pseudoalteromonas atlantica T6c aldehyde reductase YP_662439.1 3489673 R 342610 CDS YP_662440.1 109899185 4174637 complement(3490924..3491376) 1 NC_008228.1 KEGG: tbd:Tbd_0063 hypothetical protein; hypothetical protein 3491376 4174637 Patl_2878 Pseudoalteromonas atlantica T6c hypothetical protein YP_662440.1 3490924 R 342610 CDS YP_662441.1 109899186 4174638 complement(3491380..3491724) 1 NC_008228.1 hypothetical protein 3491724 4174638 Patl_2879 Pseudoalteromonas atlantica T6c hypothetical protein YP_662441.1 3491380 R 342610 CDS YP_662442.1 109899187 4174639 3492356..3493255 1 NC_008228.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 3493255 hisG 4174639 hisG Pseudoalteromonas atlantica T6c ATP phosphoribosyltransferase YP_662442.1 3492356 D 342610 CDS YP_662443.1 109899188 4174640 3493336..3494652 1 NC_008228.1 PFAM: histidinol dehydrogenase; KEGG: vpa:VP1138 histidinol dehydrogenase; histidinol dehydrogenase 3494652 4174640 Patl_2881 Pseudoalteromonas atlantica T6c histidinol dehydrogenase YP_662443.1 3493336 D 342610 CDS YP_662444.1 109899189 4174641 3494645..3495760 1 NC_008228.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 3495760 4174641 Patl_2882 Pseudoalteromonas atlantica T6c histidinol-phosphate aminotransferase YP_662444.1 3494645 D 342610 CDS YP_662445.1 109899190 4174642 3495762..3496838 1 NC_008228.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 3496838 4174642 Patl_2883 Pseudoalteromonas atlantica T6c imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_662445.1 3495762 D 342610 CDS YP_662446.1 109899191 4174643 3496838..3497467 1 NC_008228.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 3497467 hisH 4174643 hisH Pseudoalteromonas atlantica T6c imidazole glycerol phosphate synthase subunit HisH YP_662446.1 3496838 D 342610 CDS YP_662447.1 109899192 4174644 3497476..3498210 1 NC_008228.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 3498210 4174644 Patl_2885 Pseudoalteromonas atlantica T6c 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_662447.1 3497476 D 342610 CDS YP_662448.1 109899193 4174645 3498398..3499396 1 NC_008228.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 3499396 4174645 Patl_2886 Pseudoalteromonas atlantica T6c branched-chain amino acid aminotransferase YP_662448.1 3498398 D 342610 CDS YP_662449.1 109899194 4174646 3499473..3500246 1 NC_008228.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 3500246 4174646 Patl_2887 Pseudoalteromonas atlantica T6c imidazole glycerol phosphate synthase subunit HisF YP_662449.1 3499473 D 342610 CDS YP_662450.1 109899195 4174647 3500308..3500928 1 NC_008228.1 PFAM: phosphoribosyl-AMP cyclohydrolase phosphoribosyl-ATP pyrophosphohydrolase; KEGG: yps:YPTB1555 histidine biosynthesis bifunctional protein; phosphoribosyl-ATP pyrophosphohydrolase 3500928 4174647 Patl_2888 Pseudoalteromonas atlantica T6c phosphoribosyl-ATP pyrophosphohydrolase YP_662450.1 3500308 D 342610 CDS YP_662451.1 109899196 4174648 3501258..3501809 1 NC_008228.1 PFAM: cytochrome B561; KEGG: ppr:PBPRB0400 putative cytochrome b561; cytochrome B561 3501809 4174648 Patl_2889 Pseudoalteromonas atlantica T6c cytochrome B561 YP_662451.1 3501258 D 342610 CDS YP_662452.1 109899197 4174649 3501812..3502381 1 NC_008228.1 PFAM: YceI; KEGG: pha:PSHAa1298 periplasmic protein; hypothetical protein 3502381 4174649 Patl_2890 Pseudoalteromonas atlantica T6c hypothetical protein YP_662452.1 3501812 D 342610 CDS YP_662453.1 109899198 4174650 3502701..3503165 1 NC_008228.1 PFAM: heat shock protein Hsp20; KEGG: pha:PSHAa0993 small heat shock protein; heat shock protein Hsp20 3503165 4174650 Patl_2891 Pseudoalteromonas atlantica T6c heat shock protein Hsp20 YP_662453.1 3502701 D 342610 CDS YP_662454.1 109899199 4174651 complement(3503281..3503670) 1 NC_008228.1 KEGG: mag:amb2570 uncharacterized relative of glutathione S-transferase; glutathione S-transferase-like protein 3503670 4174651 Patl_2892 Pseudoalteromonas atlantica T6c glutathione S-transferase-like protein YP_662454.1 3503281 R 342610 CDS YP_662455.1 109899200 4174652 complement(3503801..3504445) 1 NC_008228.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 3504445 adk 4174652 adk Pseudoalteromonas atlantica T6c adenylate kinase YP_662455.1 3503801 R 342610 CDS YP_662456.1 109899201 4174653 complement(3504634..3506556) 1 NC_008228.1 molecular chaperone; heat shock protein 90 3506556 4174653 Patl_2894 Pseudoalteromonas atlantica T6c heat shock protein 90 YP_662456.1 3504634 R 342610 CDS YP_662457.1 109899202 4174654 complement(3506713..3507315) 1 NC_008228.1 KEGG: ssn:SSO_0459 recombination and repair; TIGRFAM: recombination protein RecR; PFAM: RecR protein TOPRIM domain containing protein; SMART: Toprim subdomain; recombination protein RecR 3507315 4174654 Patl_2895 Pseudoalteromonas atlantica T6c recombination protein RecR YP_662457.1 3506713 R 342610 CDS YP_662458.1 109899203 4174655 complement(3507354..3507653) 1 NC_008228.1 PFAM: conserved hypothetical protein 103; KEGG: ilo:IL1848 hypothetical protein; hypothetical protein 3507653 4174655 Patl_2896 Pseudoalteromonas atlantica T6c hypothetical protein YP_662458.1 3507354 R 342610 CDS YP_662459.1 109899204 4174656 complement(3507711..3510455) 1 NC_008228.1 KEGG: pha:PSHAa1201 DnaX, DNA polymerase III, gamma/tau subunits; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central region; SMART: ATPase; DNA polymerase III subunits gamma and tau 3510455 4174656 Patl_2897 Pseudoalteromonas atlantica T6c DNA polymerase III subunits gamma and tau YP_662459.1 3507711 R 342610 CDS YP_662460.1 109899205 4174657 complement(3510465..3511001) 1 NC_008228.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 3511001 4174657 Patl_2898 Pseudoalteromonas atlantica T6c adenine phosphoribosyltransferase YP_662460.1 3510465 R 342610 CDS YP_662461.1 109899206 4174658 complement(3511242..3511991) 1 NC_008228.1 KEGG: pha:PSHAa1198 hypothetical protein; hypothetical protein 3511991 4174658 Patl_2899 Pseudoalteromonas atlantica T6c hypothetical protein YP_662461.1 3511242 R 342610 CDS YP_662462.1 109899207 4174659 complement(3511992..3512840) 1 NC_008228.1 PFAM: protein of unknown function DUF692; KEGG: pha:PSHAa1197 hypothetical protein; hypothetical protein 3512840 4174659 Patl_2900 Pseudoalteromonas atlantica T6c hypothetical protein YP_662462.1 3511992 R 342610 CDS YP_662463.1 109899208 4174660 complement(3512956..3513429) 1 NC_008228.1 KEGG: pha:PSHAa1196 hypothetical protein; hypothetical protein 3513429 4174660 Patl_2901 Pseudoalteromonas atlantica T6c hypothetical protein YP_662463.1 3512956 R 342610 CDS YP_662464.1 109899209 4174661 complement(3513966..3515207) 1 NC_008228.1 PFAM: beta-lactamase; KEGG: nar:Saro_2025 beta-lactamase; beta-lactamase 3515207 4174661 Patl_2902 Pseudoalteromonas atlantica T6c beta-lactamase YP_662464.1 3513966 R 342610 CDS YP_662465.1 109899210 4174662 complement(3515668..3516873) 1 NC_008228.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 3516873 anmK 4174662 anmK Pseudoalteromonas atlantica T6c anhydro-N-acetylmuramic acid kinase YP_662465.1 3515668 R 342610 CDS YP_662466.1 109899211 4174663 3517075..3519819 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3760 TonB-dependent receptor; TonB-dependent receptor 3519819 4174663 Patl_2904 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_662466.1 3517075 D 342610 CDS YP_662467.1 109899212 4174664 3520112..3520435 1 NC_008228.1 KEGG: cps:CPS_1442 hypothetical protein; hypothetical protein 3520435 4174664 Patl_2905 Pseudoalteromonas atlantica T6c hypothetical protein YP_662467.1 3520112 D 342610 CDS YP_662468.1 109899213 4174665 complement(3521010..3521351) 1 NC_008228.1 hypothetical protein 3521351 4174665 Patl_2906 Pseudoalteromonas atlantica T6c hypothetical protein YP_662468.1 3521010 R 342610 CDS YP_662469.1 109899214 4174666 complement(3521352..3522431) 1 NC_008228.1 KEGG: hch:HCH_05761 hypothetical protein; hypothetical protein 3522431 4174666 Patl_2907 Pseudoalteromonas atlantica T6c hypothetical protein YP_662469.1 3521352 R 342610 CDS YP_662470.1 109899215 4174667 3522801..3523823 1 NC_008228.1 PFAM: cobalamin synthesis protein, P47K; KEGG: cps:CPS_1300 cobalamin synthesis protein/P47K family protein; cobalamin synthesis protein, P47K 3523823 4174667 Patl_2908 Pseudoalteromonas atlantica T6c cobalamin synthesis protein, P47K YP_662470.1 3522801 D 342610 CDS YP_662471.1 109899216 4174668 complement(3524245..3525363) 1 NC_008228.1 PFAM: protein of unknown function UPF0118; KEGG: son:SO2920 hypothetical protein; hypothetical protein 3525363 4174668 Patl_2909 Pseudoalteromonas atlantica T6c hypothetical protein YP_662471.1 3524245 R 342610 CDS YP_662472.1 109899217 4174669 3525557..3525922 1 NC_008228.1 catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 3525922 folX 4174669 folX Pseudoalteromonas atlantica T6c D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase YP_662472.1 3525557 D 342610 CDS YP_662473.1 109899218 4174670 3525940..3526833 1 NC_008228.1 TIGRFAM: conserved hypothetical protein; PFAM: NAD-dependent epimerase/dehydratase Domain of unknown function DUF1731; KEGG: eca:ECA3046 hypothetical protein; hypothetical protein 3526833 4174670 Patl_2911 Pseudoalteromonas atlantica T6c hypothetical protein YP_662473.1 3525940 D 342610 CDS YP_662474.1 109899219 4174671 complement(3526973..3529501) 1 NC_008228.1 PFAM: protein of unknown function DUF214; KEGG: ilo:IL1766 ABC-type transport system, permease component; hypothetical protein 3529501 4174671 Patl_2912 Pseudoalteromonas atlantica T6c hypothetical protein YP_662474.1 3526973 R 342610 CDS YP_662475.1 109899220 4174672 complement(3529505..3530230) 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: cps:CPS_2309 ABC transporter, ATP-binding domain; ABC transporter-like protein 3530230 4174672 Patl_2913 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_662475.1 3529505 R 342610 CDS YP_662476.1 109899221 4174673 3530247..3530885 1 NC_008228.1 PFAM: lipolytic enzyme, G-D-S-L; KEGG: son:SO2928 acyl-CoA thioesterase I, putative; arylesterase 3530885 4174673 Patl_2914 Pseudoalteromonas atlantica T6c arylesterase YP_662476.1 3530247 D 342610 CDS YP_662477.1 109899222 4174674 complement(3531332..3532264) 1 NC_008228.1 PFAM: dihydrouridine synthase, DuS; KEGG: son:SO2006 NifR3/Smm1 family protein; dihydrouridine synthase, DuS 3532264 4174674 Patl_2915 Pseudoalteromonas atlantica T6c dihydrouridine synthase, DuS YP_662477.1 3531332 R 342610 CDS YP_662478.1 109899223 4174675 3532769..3533974 1 NC_008228.1 PFAM: protein of unknown function DUF898, transmembrane; KEGG: sme:SMc00782 hypothetical protein; hypothetical protein 3533974 4174675 Patl_2916 Pseudoalteromonas atlantica T6c hypothetical protein YP_662478.1 3532769 D 342610 CDS YP_662479.1 109899224 4174676 3533979..3534986 1 NC_008228.1 PFAM: peptidase M48, Ste24p; KEGG: rso:RSc0644 putative transmembrane protein; peptidase M48, Ste24p 3534986 4174676 Patl_2917 Pseudoalteromonas atlantica T6c peptidase M48, Ste24p YP_662479.1 3533979 D 342610 CDS YP_662480.1 109899225 4174677 complement(3535033..3535431) 1 NC_008228.1 hypothetical protein 3535431 4174677 Patl_2918 Pseudoalteromonas atlantica T6c hypothetical protein YP_662480.1 3535033 R 342610 CDS YP_662481.1 109899226 4174682 complement(3536654..3538063) 1 NC_008228.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 3538063 gltX 4174682 gltX Pseudoalteromonas atlantica T6c glutamyl-tRNA synthetase YP_662481.1 3536654 R 342610 CDS YP_662482.1 109899227 4174686 3539802..3541418 1 NC_008228.1 PFAM: response regulator receiver; SMART: Tetratricopeptide region; KEGG: pha:PSHAa1088 TPR motives; response regulator receiver protein 3541418 4174686 Patl_2920 Pseudoalteromonas atlantica T6c response regulator receiver protein YP_662482.1 3539802 D 342610 CDS YP_662483.1 109899228 4174687 complement(3541734..3542978) 1 NC_008228.1 TIGRFAM: kynureninase; PFAM: aminotransferase, class V; KEGG: ilo:IL2179 kynureninase; kynureninase 3542978 4174687 Patl_2921 Pseudoalteromonas atlantica T6c kynureninase YP_662483.1 3541734 R 342610 CDS YP_662484.1 109899229 4174688 complement(3542978..3543901) 1 NC_008228.1 KEGG: ilo:IL2178 putative lipase/esterase; putative lipase/esterase 3543901 4174688 Patl_2922 Pseudoalteromonas atlantica T6c putative lipase/esterase YP_662484.1 3542978 R 342610 CDS YP_662485.1 109899230 4174689 complement(3544078..3545262) 1 NC_008228.1 KEGG: pha:PSHAa1454 acetyl-CoA acetyltransferase with thiolase domain; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; acetyl-CoA acetyltransferase 3545262 4174689 Patl_2923 Pseudoalteromonas atlantica T6c acetyl-CoA acetyltransferase YP_662485.1 3544078 R 342610 CDS YP_662486.1 109899231 4174690 3545542..3545937 1 NC_008228.1 PFAM: regulatory protein, MerR; KEGG: ilo:IL0873 transcriptional regulator, MerR family; MerR family transcriptional regulator 3545937 4174690 Patl_2924 Pseudoalteromonas atlantica T6c MerR family transcriptional regulator YP_662486.1 3545542 D 342610 CDS YP_662487.1 109899232 4174691 3545934..3547103 1 NC_008228.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: son:SO1897 isovaleryl-CoA dehydrogenase; isovaleryl-CoA dehydrogenase 3547103 4174691 Patl_2925 Pseudoalteromonas atlantica T6c isovaleryl-CoA dehydrogenase YP_662487.1 3545934 D 342610 CDS YP_662488.1 109899233 4174692 3547194..3548801 1 NC_008228.1 PFAM: carboxyl transferase; KEGG: cps:CPS_1602 methylcrotonyl CoA carboxylase, beta subunit; propionyl-CoA carboxylase 3548801 4174692 Patl_2926 Pseudoalteromonas atlantica T6c propionyl-CoA carboxylase YP_662488.1 3547194 D 342610 CDS YP_662489.1 109899234 4174693 3548814..3549635 1 NC_008228.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gme:Gmet_3291 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 3549635 4174693 Patl_2927 Pseudoalteromonas atlantica T6c enoyl-CoA hydratase/isomerase YP_662489.1 3548814 D 342610 CDS YP_662490.1 109899235 4174694 3549632..3551659 1 NC_008228.1 PFAM: biotin/lipoyl attachment Carbamoyl-phosphate synthase L chain, ATP-binding Carbamoyl-phosphate synthetase large chain-like biotin carboxylase-like; KEGG: cps:CPS_1600 methylcrotonyl-CoA carboxylase, alpha subunit; carbamoyl-phosphate synthase subunit L 3551659 4174694 Patl_2928 Pseudoalteromonas atlantica T6c carbamoyl-phosphate synthase subunit L YP_662490.1 3549632 D 342610 CDS YP_662491.1 109899236 4174695 3551656..3552573 1 NC_008228.1 PFAM: pyruvate carboxyltransferase; KEGG: cps:CPS_1599 hydroxymethylglutaryl-CoA lyase; pyruvate carboxyltransferase 3552573 4174695 Patl_2929 Pseudoalteromonas atlantica T6c pyruvate carboxyltransferase YP_662491.1 3551656 D 342610 CDS YP_662492.1 109899237 4174696 complement(3552613..3553023) 1 NC_008228.1 KEGG: cps:CPS_4304 hypothetical protein; hypothetical protein 3553023 4174696 Patl_2930 Pseudoalteromonas atlantica T6c hypothetical protein YP_662492.1 3552613 R 342610 CDS YP_662493.1 109899238 4174697 complement(3553169..3553708) 1 NC_008228.1 KEGG: jan:Jann_0111 hypothetical protein; hypothetical protein 3553708 4174697 Patl_2931 Pseudoalteromonas atlantica T6c hypothetical protein YP_662493.1 3553169 R 342610 CDS YP_662494.1 109899239 4174698 3554161..3555423 1 NC_008228.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 3555423 glgC 4174698 glgC Pseudoalteromonas atlantica T6c glucose-1-phosphate adenylyltransferase YP_662494.1 3554161 D 342610 CDS YP_662495.1 109899240 4174699 complement(3555489..3556328) 1 NC_008228.1 PFAM: alpha/beta hydrolase fold; KEGG: cps:CPS_4105 hypothetical protein; alpha/beta hydrolase fold protein 3556328 4174699 Patl_2933 Pseudoalteromonas atlantica T6c alpha/beta hydrolase fold protein YP_662495.1 3555489 R 342610 CDS YP_662496.1 109899241 4174700 complement(3556356..3557681) 1 NC_008228.1 PFAM: major facilitator superfamily MFS_1; KEGG: ccr:CC2486 major facilitator family transporter; major facilitator superfamily transporter 3557681 4174700 Patl_2934 Pseudoalteromonas atlantica T6c major facilitator superfamily transporter YP_662496.1 3556356 R 342610 CDS YP_662497.1 109899242 4174701 3557938..3558750 1 NC_008228.1 KEGG: pha:PSHAb0355 putative acyl-CoA thioesterase, TesB family; TesB family acyl-CoA thioesterase 3558750 4174701 Patl_2935 Pseudoalteromonas atlantica T6c TesB family acyl-CoA thioesterase YP_662497.1 3557938 D 342610 CDS YP_662498.1 109899243 4174702 complement(3558857..3559702) 1 NC_008228.1 KEGG: cps:CPS_4407 hypothetical protein; putative signal transduction protein 3559702 4174702 Patl_2936 Pseudoalteromonas atlantica T6c putative signal transduction protein YP_662498.1 3558857 R 342610 CDS YP_662499.1 109899244 4174705 complement(3560531..3561286) 1 NC_008228.1 PFAM: Tetratricopeptide TPR_2; KEGG: ilo:IL1078 uncharacterized conserved protein, contains TPR repeats; hypothetical protein 3561286 4174705 Patl_2937 Pseudoalteromonas atlantica T6c hypothetical protein YP_662499.1 3560531 R 342610 CDS YP_662500.1 109899245 4174706 complement(3561298..3561858) 1 NC_008228.1 PFAM: OmpA/MotB; KEGG: pha:PSHAa1870 required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA; OmpA/MotB protein 3561858 4174706 Patl_2938 Pseudoalteromonas atlantica T6c OmpA/MotB protein YP_662500.1 3561298 R 342610 CDS YP_662501.1 109899246 4174707 complement(3561905..3563260) 1 NC_008228.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 3563260 tolB 4174707 tolB Pseudoalteromonas atlantica T6c translocation protein TolB YP_662501.1 3561905 R 342610 CDS YP_662502.1 109899247 4174708 complement(3563260..3564156) 1 NC_008228.1 PFAM: TolA; KEGG: son:SO2749 tolA protein; hypothetical protein 3564156 4174708 Patl_2940 Pseudoalteromonas atlantica T6c hypothetical protein YP_662502.1 3563260 R 342610 CDS YP_662503.1 109899248 4174709 complement(3564170..3564592) 1 NC_008228.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ilo:IL1082 biopolymer transport protein; biopolymer transport protein ExbD/TolR 3564592 4174709 Patl_2941 Pseudoalteromonas atlantica T6c biopolymer transport protein ExbD/TolR YP_662503.1 3564170 R 342610 CDS YP_662504.1 109899249 4174710 complement(3564605..3565315) 1 NC_008228.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: cps:CPS_1728 TolQ protein; MotA/TolQ/ExbB proton channel 3565315 4174710 Patl_2942 Pseudoalteromonas atlantica T6c MotA/TolQ/ExbB proton channel YP_662504.1 3564605 R 342610 CDS YP_662505.1 109899250 4174711 complement(3565305..3565727) 1 NC_008228.1 TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily; KEGG: cps:CPS_1727 conserved hypothetical protein; 4-hydroxybenzoyl-CoA thioesterase 3565727 4174711 Patl_2943 Pseudoalteromonas atlantica T6c 4-hydroxybenzoyl-CoA thioesterase YP_662505.1 3565305 R 342610 CDS YP_662506.1 109899251 4174712 complement(3566331..3567338) 1 NC_008228.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 3567338 ruvB 4174712 ruvB Pseudoalteromonas atlantica T6c Holliday junction DNA helicase RuvB YP_662506.1 3566331 R 342610 CDS YP_662507.1 109899252 4174713 complement(3567469..3568098) 1 NC_008228.1 KEGG: vfi:VF0951 holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein, RuvA RuvA-like; SMART: Helix-hairpin-helix DNA-binding, class 1; Holliday junction DNA helicase RuvA 3568098 4174713 Patl_2945 Pseudoalteromonas atlantica T6c Holliday junction DNA helicase RuvA YP_662507.1 3567469 R 342610 CDS YP_662508.1 109899253 4174714 complement(3568115..3568636) 1 NC_008228.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 3568636 ruvC 4174714 ruvC Pseudoalteromonas atlantica T6c Holliday junction resolvase YP_662508.1 3568115 R 342610 CDS YP_662509.1 109899254 4174715 complement(3568673..3569056) 1 NC_008228.1 converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase 3569056 ntpA 4174715 ntpA Pseudoalteromonas atlantica T6c dATP pyrophosphohydrolase YP_662509.1 3568673 R 342610 CDS YP_662510.1 109899255 4174716 complement(3569143..3570921) 1 NC_008228.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 3570921 aspS 4174716 aspS Pseudoalteromonas atlantica T6c aspartyl-tRNA synthetase YP_662510.1 3569143 R 342610 CDS YP_662511.1 109899256 4174717 3571223..3572125 1 NC_008228.1 PFAM: protein of unknown function DUF72; KEGG: pha:PSHAa1939 hypothetical protein; hypothetical protein 3572125 4174717 Patl_2949 Pseudoalteromonas atlantica T6c hypothetical protein YP_662511.1 3571223 D 342610 CDS YP_662512.1 109899257 4174718 complement(3572273..3573466) 1 NC_008228.1 KEGG: pha:PSHAa1625 ABC-type Na+ efflux pump, permease component; Na+ efflux pump ABC transporter permease 3573466 4174718 Patl_2950 Pseudoalteromonas atlantica T6c Na+ efflux pump ABC transporter permease YP_662512.1 3572273 R 342610 CDS YP_662513.1 109899258 4174719 complement(3573481..3574263) 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: pha:PSHAa1626 sodium ABC exporter ATP-binding protein; ABC transporter-like protein 3574263 4174719 Patl_2951 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_662513.1 3573481 R 342610 CDS YP_662514.1 109899259 4174720 3574507..3575214 1 NC_008228.1 KEGG: pha:PSHAa2825 hypothetical protein; hypothetical protein 3575214 4174720 Patl_2952 Pseudoalteromonas atlantica T6c hypothetical protein YP_662514.1 3574507 D 342610 CDS YP_662515.1 109899260 4174721 complement(3575253..3576107) 1 NC_008228.1 KEGG: pha:PSHAa1627 hypothetical protein; hypothetical protein 3576107 4174721 Patl_2953 Pseudoalteromonas atlantica T6c hypothetical protein YP_662515.1 3575253 R 342610 CDS YP_662516.1 109899261 4174722 3576185..3577828 1 NC_008228.1 PFAM: peptidase M28; KEGG: pha:PSHAa1628 glutamate carboxypeptidase II; peptidase M28 3577828 4174722 Patl_2954 Pseudoalteromonas atlantica T6c peptidase M28 YP_662516.1 3576185 D 342610 CDS YP_662517.1 109899262 4174723 3578144..3579814 1 NC_008228.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 3579814 asnB 4174723 asnB Pseudoalteromonas atlantica T6c asparagine synthetase B YP_662517.1 3578144 D 342610 CDS YP_662518.1 109899263 4174724 complement(3580005..3580892) 1 NC_008228.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: lpl:lp_0060 short-chain dehydrogenase/oxidoreductase; short-chain dehydrogenase/reductase SDR 3580892 4174724 Patl_2956 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_662518.1 3580005 R 342610 CDS YP_662519.1 109899264 4174725 3581278..3582285 1 NC_008228.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: par:Psyc_0011 probable zinc-containing alcohol dehydrogenase; zinc-binding alcohol dehydrogenase 3582285 4174725 Patl_2957 Pseudoalteromonas atlantica T6c zinc-binding alcohol dehydrogenase YP_662519.1 3581278 D 342610 CDS YP_662520.1 109899265 4174726 complement(3582458..3583330) 1 NC_008228.1 KEGG: hch:HCH_06743 hypothetical protein; hypothetical protein 3583330 4174726 Patl_2958 Pseudoalteromonas atlantica T6c hypothetical protein YP_662520.1 3582458 R 342610 CDS YP_662521.1 109899266 4174727 complement(3583323..3583757) 1 NC_008228.1 hypothetical protein 3583757 4174727 Patl_2959 Pseudoalteromonas atlantica T6c hypothetical protein YP_662521.1 3583323 R 342610 CDS YP_662522.1 109899267 4174728 complement(3583772..3584518) 1 NC_008228.1 PFAM: Radical SAM; KEGG: cps:CPS_2883 radical SAM domain protein; radical SAM family protein 3584518 4174728 Patl_2960 Pseudoalteromonas atlantica T6c radical SAM family protein YP_662522.1 3583772 R 342610 CDS YP_662523.1 109899268 4174729 3584552..3585208 1 NC_008228.1 TIGRFAM: exsB protein; PFAM: ExsB; KEGG: pha:PSHAa1116 regulator protein; exsB protein 3585208 4174729 Patl_2961 Pseudoalteromonas atlantica T6c exsB protein YP_662523.1 3584552 D 342610 CDS YP_662524.1 109899269 4174730 complement(3585380..3586300) 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pfl:PFL_0732 transcriptional regulator, LysR family; LysR family transcriptional regulator 3586300 4174730 Patl_2962 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_662524.1 3585380 R 342610 CDS YP_662525.1 109899270 4174731 complement(3586509..3588518) 1 NC_008228.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 3588518 4174731 Patl_2963 Pseudoalteromonas atlantica T6c excinuclease ABC subunit B YP_662525.1 3586509 R 342610 CDS YP_662526.1 109899271 4174732 complement(3588554..3589915) 1 NC_008228.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cps:CPS_2888 MATE efflux family protein; MATE efflux family protein 3589915 4174732 Patl_2964 Pseudoalteromonas atlantica T6c MATE efflux family protein YP_662526.1 3588554 R 342610 CDS YP_662527.1 109899272 4174735 3591647..3592228 1 NC_008228.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: ppr:PBPRA2560 putative RnfA-related protein (RnfA, Predicted NADH:ubiquinone oxidoreductase, subunit RnfA); RnfABCDGE type electron transport complex subunit A 3592228 4174735 Patl_2965 Pseudoalteromonas atlantica T6c RnfABCDGE type electron transport complex subunit A YP_662527.1 3591647 D 342610 CDS YP_662528.1 109899273 4174736 3592228..3592794 1 NC_008228.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 3592794 4174736 Patl_2966 Pseudoalteromonas atlantica T6c electron transport complex protein RnfB YP_662528.1 3592228 D 342610 CDS YP_662529.1 109899274 4174737 3592794..3595466 1 NC_008228.1 TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: pha:PSHAa1103 electron transport complex protein RnfC; RnfABCDGE type electron transport complex subunit C 3595466 4174737 Patl_2967 Pseudoalteromonas atlantica T6c RnfABCDGE type electron transport complex subunit C YP_662529.1 3592794 D 342610 CDS YP_662530.1 109899275 4174738 3595475..3596548 1 NC_008228.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 3596548 rnfD 4174738 rnfD Pseudoalteromonas atlantica T6c electron transport complex protein RnfD YP_662530.1 3595475 D 342610 CDS YP_662531.1 109899276 4174739 3596545..3597192 1 NC_008228.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding; KEGG: vch:VC1013 RnfG-related protein; RnfABCDGE type electron transport complex subunit G 3597192 4174739 Patl_2969 Pseudoalteromonas atlantica T6c RnfABCDGE type electron transport complex subunit G YP_662531.1 3596545 D 342610 CDS YP_662532.1 109899277 4174740 3597199..3597897 1 NC_008228.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 3597897 4174740 Patl_2970 Pseudoalteromonas atlantica T6c electron transport complex protein RsxE YP_662532.1 3597199 D 342610 CDS YP_662533.1 109899278 4174741 3597932..3598564 1 NC_008228.1 KEGG: vpa:VP2108 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif HhH-GPD; SMART: Iron-sulfur cluster loop; endonuclease III 3598564 4174741 Patl_2971 Pseudoalteromonas atlantica T6c endonuclease III YP_662533.1 3597932 D 342610 CDS YP_662534.1 109899279 4174742 complement(3598721..3599077) 1 NC_008228.1 PFAM: DoxX; KEGG: jan:Jann_0759 hypothetical protein; DoxX protein 3599077 4174742 Patl_2972 Pseudoalteromonas atlantica T6c DoxX protein YP_662534.1 3598721 R 342610 CDS YP_662535.1 109899280 4174743 3599177..3600070 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: son:SO1907 transcriptional regulator, LysR family; LysR family transcriptional regulator 3600070 4174743 Patl_2973 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_662535.1 3599177 D 342610 CDS YP_662536.1 109899281 4174744 3600175..3600426 1 NC_008228.1 SMART: Iron-sulfur cluster loop; KEGG: ppr:PBPRA2566 putative endonuclease III; iron-sulfur cluster protein 3600426 4174744 Patl_2974 Pseudoalteromonas atlantica T6c iron-sulfur cluster protein YP_662536.1 3600175 D 342610 CDS YP_662537.1 109899282 4174745 complement(3600513..3601277) 1 NC_008228.1 KEGG: sil:SPO0890 lipase, putative; lipase 3601277 4174745 Patl_2975 Pseudoalteromonas atlantica T6c lipase YP_662537.1 3600513 R 342610 CDS YP_662538.1 109899283 4174746 complement(3601262..3601948) 1 NC_008228.1 TIGRFAM: Fibrobacter succinogenes major paralogous domain; KEGG: cte:CT0060 hypothetical protein; hypothetical protein 3601948 4174746 Patl_2976 Pseudoalteromonas atlantica T6c hypothetical protein YP_662538.1 3601262 R 342610 CDS YP_662539.1 109899284 4174747 complement(3602009..3602959) 1 NC_008228.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rba:RB4725 probable oxidoreductase yajO1; short-chain dehydrogenase/reductase SDR 3602959 4174747 Patl_2977 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_662539.1 3602009 R 342610 CDS YP_662540.1 109899285 4174748 3603170..3604063 1 NC_008228.1 PFAM: helix-turn-helix, AraC type AraC-type transcriptional regulator-like; KEGG: bte:BTH_I0153 transcriptional regulator, AraC family; AraC family transcriptional regulator 3604063 4174748 Patl_2978 Pseudoalteromonas atlantica T6c AraC family transcriptional regulator YP_662540.1 3603170 D 342610 CDS YP_662541.1 109899286 4174749 3604280..3604447 1 NC_008228.1 SMART: Iron-sulfur cluster loop; KEGG: ilo:IL1800 endonuclease III; iron-sulfur cluster protein 3604447 4174749 Patl_2979 Pseudoalteromonas atlantica T6c iron-sulfur cluster protein YP_662541.1 3604280 D 342610 CDS YP_662542.1 109899287 4174750 3604481..3604675 1 NC_008228.1 KEGG: btk:BT9727_4273 hypothetical protein; hypothetical protein 3604675 4174750 Patl_2980 Pseudoalteromonas atlantica T6c hypothetical protein YP_662542.1 3604481 D 342610 CDS YP_662543.1 109899288 4174751 3604749..3605501 1 NC_008228.1 PFAM: protein of unknown function DUF81; KEGG: oih:OB0991 hypothetical protein; hypothetical protein 3605501 4174751 Patl_2981 Pseudoalteromonas atlantica T6c hypothetical protein YP_662543.1 3604749 D 342610 CDS YP_662544.1 109899289 4174752 complement(3605580..3606086) 1 NC_008228.1 KEGG: pha:PSHAa0525 hypothetical protein; hypothetical protein 3606086 4174752 Patl_2982 Pseudoalteromonas atlantica T6c hypothetical protein YP_662544.1 3605580 R 342610 CDS YP_662545.1 109899290 4174753 complement(3606148..3607653) 1 NC_008228.1 KEGG: cps:CPS_4835 putative heat shock protein 70 family protein; putative heat shock protein 70 family protein 3607653 4174753 Patl_2983 Pseudoalteromonas atlantica T6c putative heat shock protein 70 family protein YP_662545.1 3606148 R 342610 CDS YP_662546.1 109899291 4174754 complement(3607927..3608709) 1 NC_008228.1 KEGG: mag:amb2868 hypothetical protein; hypothetical protein 3608709 4174754 Patl_2984 Pseudoalteromonas atlantica T6c hypothetical protein YP_662546.1 3607927 R 342610 CDS YP_662547.1 109899292 4174755 complement(3608909..3610168) 1 NC_008228.1 PFAM: TPR repeat; SMART: Tetratricopeptide region; KEGG: cps:CPS_3751 TPR domain protein; hypothetical protein 3610168 4174755 Patl_2985 Pseudoalteromonas atlantica T6c hypothetical protein YP_662547.1 3608909 R 342610 CDS YP_662548.1 109899293 4174756 complement(3610168..3610782) 1 NC_008228.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pha:PSHAa1191 TonB2 protein; iron acquisition via a siderophore-mediated active transport; TonB family protein 3610782 4174756 Patl_2986 Pseudoalteromonas atlantica T6c TonB family protein YP_662548.1 3610168 R 342610 CDS YP_662549.1 109899294 4174757 complement(3610784..3611185) 1 NC_008228.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ilo:IL1856 biopolymer transport protein; biopolymer transport protein ExbD/TolR 3611185 4174757 Patl_2987 Pseudoalteromonas atlantica T6c biopolymer transport protein ExbD/TolR YP_662549.1 3610784 R 342610 CDS YP_662550.1 109899295 4174758 complement(3611198..3611722) 1 NC_008228.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: cps:CPS_3754 biopolymer transport ExbB protein; MotA/TolQ/ExbB proton channel 3611722 4174758 Patl_2988 Pseudoalteromonas atlantica T6c MotA/TolQ/ExbB proton channel YP_662550.1 3611198 R 342610 CDS YP_662551.1 109899296 4174759 complement(3611724..3613076) 1 NC_008228.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: ilo:IL1858 TonB system biopolymer transport component; MotA/TolQ/ExbB proton channel 3613076 4174759 Patl_2989 Pseudoalteromonas atlantica T6c MotA/TolQ/ExbB proton channel YP_662551.1 3611724 R 342610 CDS YP_662552.1 109899297 4174760 complement(3613082..3613846) 1 NC_008228.1 KEGG: cps:CPS_3756 hypothetical protein; hypothetical protein 3613846 4174760 Patl_2990 Pseudoalteromonas atlantica T6c hypothetical protein YP_662552.1 3613082 R 342610 CDS YP_662553.1 109899298 4174761 3614365..3615339 1 NC_008228.1 PFAM: Methyltransferase type 11; KEGG: pha:PSHAa1988 S-adenosyl-L-methionine-dependent methyltransferase; type 11 methyltransferase 3615339 4174761 Patl_2991 Pseudoalteromonas atlantica T6c type 11 methyltransferase YP_662553.1 3614365 D 342610 CDS YP_662554.1 109899299 4174762 complement(3615946..3617592) 1 NC_008228.1 PFAM: TPR repeat Sel1-like repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: aae:aq_1088 hypothetical protein; hypothetical protein 3617592 4174762 Patl_2992 Pseudoalteromonas atlantica T6c hypothetical protein YP_662554.1 3615946 R 342610 CDS YP_662555.1 109899300 4174763 complement(3617682..3620582) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: zmo:ZMO1522 hypothetical protein; TonB-dependent receptor 3620582 4174763 Patl_2993 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_662555.1 3617682 R 342610 CDS YP_662556.1 109899301 4174764 3621079..3621345 1 NC_008228.1 KEGG: cps:CPS_3759 hypothetical protein; hypothetical protein 3621345 4174764 Patl_2994 Pseudoalteromonas atlantica T6c hypothetical protein YP_662556.1 3621079 D 342610 CDS YP_662557.1 109899302 4174765 complement(3621586..3622701) 1 NC_008228.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: son:SO2638 leucine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase 3622701 4174765 Patl_2995 Pseudoalteromonas atlantica T6c Glu/Leu/Phe/Val dehydrogenase YP_662557.1 3621586 R 342610 CDS YP_662558.1 109899303 4174766 3622858..3623328 1 NC_008228.1 PFAM: regulatory proteins, AsnC/Lrp; KEGG: ppu:PP4595 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 3623328 4174766 Patl_2996 Pseudoalteromonas atlantica T6c AsnC family transcriptional regulator YP_662558.1 3622858 D 342610 CDS YP_662559.1 109899304 4174767 complement(3623460..3624542) 1 NC_008228.1 KEGG: vpa:VP1349 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 3624542 4174767 Patl_2997 Pseudoalteromonas atlantica T6c 4-hydroxyphenylpyruvate dioxygenase YP_662559.1 3623460 R 342610 CDS YP_662560.1 109899305 4174768 complement(3624746..3626302) 1 NC_008228.1 PFAM: sigma-54 factor, interaction region amino acid-binding ACT; SMART: PAS ATPase; KEGG: pha:PSHAa2157 transcriptional regulatory protein TyrR; transcriptional regulator TyrR 3626302 4174768 Patl_2998 Pseudoalteromonas atlantica T6c transcriptional regulator TyrR YP_662560.1 3624746 R 342610 CDS YP_662561.1 109899306 4174769 complement(3626435..3627235) 1 NC_008228.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 3627235 phhA 4174769 phhA Pseudoalteromonas atlantica T6c phenylalanine 4-monooxygenase YP_662561.1 3626435 R 342610 CDS YP_662562.1 109899307 4174770 complement(3627662..3628738) 1 NC_008228.1 PFAM: conserved hypothetical protein 1620; KEGG: vfi:VFA0315 hypothetical protein; hypothetical protein 3628738 4174770 Patl_3000 Pseudoalteromonas atlantica T6c hypothetical protein YP_662562.1 3627662 R 342610 CDS YP_662563.1 109899308 4174771 complement(3628735..3630159) 1 NC_008228.1 PFAM: protein of unknown function DUF463, YcjX-like protein; KEGG: yps:YPTB2266 hypothetical protein; hypothetical protein 3630159 4174771 Patl_3001 Pseudoalteromonas atlantica T6c hypothetical protein YP_662563.1 3628735 R 342610 CDS YP_662564.1 109899309 4174772 complement(3630322..3630783) 1 NC_008228.1 PFAM: PspC; KEGG: pha:PSHAa2047 transcriptional activator of the psp operon with PspB, phage shock protein; phage shock protein C, PspC 3630783 4174772 Patl_3002 Pseudoalteromonas atlantica T6c phage shock protein C, PspC YP_662564.1 3630322 R 342610 CDS YP_662565.1 109899310 4174773 complement(3630780..3631016) 1 NC_008228.1 acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B 3631016 pspB 4174773 pspB Pseudoalteromonas atlantica T6c phage shock protein B YP_662565.1 3630780 R 342610 CDS YP_662566.1 109899311 4174774 complement(3631039..3631722) 1 NC_008228.1 PFAM: PspA/IM30; KEGG: cps:CPS_3772 phage shock protein A; phage shock protein A, PspA 3631722 4174774 Patl_3004 Pseudoalteromonas atlantica T6c phage shock protein A, PspA YP_662566.1 3631039 R 342610 CDS YP_662567.1 109899312 4174775 3631939..3633051 1 NC_008228.1 PFAM: sigma-54 factor, interaction region helix-turn-helix, Fis-type ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: cps:CPS_3774 sigma-54 depedent transcriptional activator PspF; sigma-54 dependent trancsriptional regulator 3633051 4174775 Patl_3005 Pseudoalteromonas atlantica T6c sigma-54 dependent trancsriptional regulator YP_662567.1 3631939 D 342610 CDS YP_662568.1 109899313 4174776 3633057..3634691 1 NC_008228.1 PFAM: extracellular solute-binding protein, family 5; KEGG: pha:PSHAa2051 ABC transporter periplasmic peptide-binding protein; extracellular solute-binding protein 3634691 4174776 Patl_3006 Pseudoalteromonas atlantica T6c extracellular solute-binding protein YP_662568.1 3633057 D 342610 CDS YP_662569.1 109899314 4174777 3634691..3635722 1 NC_008228.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pha:PSHAa2052 peptide transport protein (ABC superfamily, membrane); binding-protein-dependent transport system inner membrane protein 3635722 4174777 Patl_3007 Pseudoalteromonas atlantica T6c binding-protein-dependent transport system inner membrane protein YP_662569.1 3634691 D 342610 CDS YP_662570.1 109899315 4174778 3635709..3636602 1 NC_008228.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pha:PSHAa2053 peptide transport protein (ABC superfamily, membrane); binding-protein-dependent transport system inner membrane protein 3636602 4174778 Patl_3008 Pseudoalteromonas atlantica T6c binding-protein-dependent transport system inner membrane protein YP_662570.1 3635709 D 342610 CDS YP_662571.1 109899316 4174779 3636602..3637597 1 NC_008228.1 KEGG: ppr:PBPRA2444 putative peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; oligopeptide/dipeptide ABC transporter ATPase 3637597 4174779 Patl_3009 Pseudoalteromonas atlantica T6c oligopeptide/dipeptide ABC transporter ATPase YP_662571.1 3636602 D 342610 CDS YP_662572.1 109899317 4174780 3637594..3638379 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: son:SO1801 peptide ABC transporter, ATP-binding protein; ABC transporter-like protein 3638379 4174780 Patl_3010 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_662572.1 3637594 D 342610 CDS YP_662573.1 109899318 4174781 complement(3638482..3639612) 1 NC_008228.1 KEGG: pha:PSHAa0540 oxaloacetate decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; sodium ion-translocating decarboxylase subunit beta 3639612 4174781 Patl_3011 Pseudoalteromonas atlantica T6c sodium ion-translocating decarboxylase subunit beta YP_662573.1 3638482 R 342610 CDS YP_662574.1 109899319 4174782 complement(3639622..3641412) 1 NC_008228.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 3641412 4174782 Patl_3012 Pseudoalteromonas atlantica T6c oxaloacetate decarboxylase YP_662574.1 3639622 R 342610 CDS YP_662575.1 109899320 4174783 complement(3641443..3641772) 1 NC_008228.1 TIGRFAM: sodium pump decarboxylases, gamma subunit; PFAM: sodium pump decarboxylase, gamma subunit; KEGG: mca:MCA2481 oxaloacetate decarboxylase, gamma subunit; sodium pump decarboxylase subunit gamma 3641772 4174783 Patl_3013 Pseudoalteromonas atlantica T6c sodium pump decarboxylase subunit gamma YP_662575.1 3641443 R 342610 CDS YP_662576.1 109899321 4174787 complement(3642770..3642985) 1 NC_008228.1 PFAM: carbon storage regulator; KEGG: vpa:VP2546 carbon storage regulator; carbon storage regulator CsrA 3642985 4174787 Patl_3014 Pseudoalteromonas atlantica T6c carbon storage regulator CsrA YP_662576.1 3642770 R 342610 CDS YP_662577.1 109899322 4174788 complement(3643121..3645718) 1 NC_008228.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 3645718 alaS 4174788 alaS Pseudoalteromonas atlantica T6c alanyl-tRNA synthetase YP_662577.1 3643121 R 342610 CDS YP_662578.1 109899323 4174789 complement(3645844..3646311) 1 NC_008228.1 PFAM: regulatory protein RecX; KEGG: vpa:VP2549 regulatory protein RecX; regulatory protein RecX 3646311 4174789 Patl_3016 Pseudoalteromonas atlantica T6c regulatory protein RecX YP_662578.1 3645844 R 342610 CDS YP_662579.1 109899324 4174790 3646338..3647492 1 NC_008228.1 PFAM: protein of unknown function DUF482; KEGG: cps:CPS_0679 hypothetical protein; hypothetical protein 3647492 4174790 Patl_3017 Pseudoalteromonas atlantica T6c hypothetical protein YP_662579.1 3646338 D 342610 CDS YP_662580.1 109899325 4174791 complement(3647546..3648175) 1 NC_008228.1 PFAM: protein of unknown function DUF938; KEGG: tbd:Tbd_0032 hypothetical protein; hypothetical protein 3648175 4174791 Patl_3018 Pseudoalteromonas atlantica T6c hypothetical protein YP_662580.1 3647546 R 342610 CDS YP_662581.1 109899326 4174793 complement(3652013..3652939) 1 NC_008228.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 3652939 4174793 Patl_3021 Pseudoalteromonas atlantica T6c homoserine O-succinyltransferase YP_662581.1 3652013 R 342610 CDS YP_662582.1 109899327 4174794 complement(3653253..3653657) 1 NC_008228.1 KEGG: son:SO3200 hypothetical protein; hypothetical protein 3653657 4174794 Patl_3022 Pseudoalteromonas atlantica T6c hypothetical protein YP_662582.1 3653253 R 342610 CDS YP_662583.1 109899328 4174795 complement(3653694..3654188) 1 NC_008228.1 PFAM: CheW-like protein; KEGG: pha:PSHAa0818 purine-binding chemotaxis protein; CheW protein 3654188 4174795 Patl_3023 Pseudoalteromonas atlantica T6c CheW protein YP_662583.1 3653694 R 342610 CDS YP_662584.1 109899329 4174796 complement(3654212..3655075) 1 NC_008228.1 PFAM: CheW-like protein; KEGG: pha:PSHAa0817 conserved protein of unknown function; putative CheW-like protein; CheW protein 3655075 4174796 Patl_3024 Pseudoalteromonas atlantica T6c CheW protein YP_662584.1 3654212 R 342610 CDS YP_662585.1 109899330 4174797 complement(3655072..3655851) 1 NC_008228.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pha:PSHAa0816 partitioning protein A; cobyrinic acid a,c-diamide synthase 3655851 4174797 Patl_3025 Pseudoalteromonas atlantica T6c cobyrinic acid a,c-diamide synthase YP_662585.1 3655072 R 342610 CDS YP_662586.1 109899331 4174798 complement(3655920..3657059) 1 NC_008228.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 3657059 4174798 Patl_3026 Pseudoalteromonas atlantica T6c chemotaxis-specific methylesterase YP_662586.1 3655920 R 342610 CDS YP_662587.1 109899332 4174799 complement(3657084..3659348) 1 NC_008228.1 PFAM: CheW-like protein ATP-binding region, ATPase-like Signal transducing histidine kinase, homodimeric Hpt; KEGG: son:SO3207 chemotaxis protein; CheA signal transduction histidine kinase 3659348 4174799 Patl_3027 Pseudoalteromonas atlantica T6c CheA signal transduction histidine kinase YP_662587.1 3657084 R 342610 CDS YP_662588.1 109899333 4174800 complement(3659361..3660104) 1 NC_008228.1 PFAM: Chemotaxis phosphatase, CheZ; KEGG: pha:PSHAa0811 chemotaxis protein CheZ; chemotaxis phosphatase, CheZ 3660104 4174800 Patl_3028 Pseudoalteromonas atlantica T6c chemotaxis phosphatase, CheZ YP_662588.1 3659361 R 342610 CDS YP_662589.1 109899334 4174801 complement(3660136..3660519) 1 NC_008228.1 PFAM: response regulator receiver; KEGG: son:SO3209 chemotaxis protein CheY; response regulator receiver protein 3660519 4174801 Patl_3029 Pseudoalteromonas atlantica T6c response regulator receiver protein YP_662589.1 3660136 R 342610 CDS YP_662590.1 109899335 4174802 complement(3660567..3661295) 1 NC_008228.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 3661295 fliA 4174802 fliA Pseudoalteromonas atlantica T6c flagellar biosynthesis sigma factor YP_662590.1 3660567 R 342610 CDS YP_662591.1 109899336 4174803 complement(3661292..3662158) 1 NC_008228.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pha:PSHAa0808 flagellar biosynthetic protein FlhG; cobyrinic acid a,c-diamide synthase 3662158 4174803 Patl_3031 Pseudoalteromonas atlantica T6c cobyrinic acid a,c-diamide synthase YP_662591.1 3661292 R 342610 CDS YP_662592.1 109899337 4174804 complement(3662155..3663486) 1 NC_008228.1 PFAM: GTP-binding signal recognition particle SRP54, G-domain; SMART: ATPase; KEGG: pha:PSHAa0807 flagellar biosynthesis protein; GTP-binding signal recognition particle 3663486 4174804 Patl_3032 Pseudoalteromonas atlantica T6c GTP-binding signal recognition particle YP_662592.1 3662155 R 342610 CDS YP_662593.1 109899338 4174805 complement(3663521..3665623) 1 NC_008228.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 3665623 flhA 4174805 flhA Pseudoalteromonas atlantica T6c flagellar biosynthesis protein FlhA YP_662593.1 3663521 R 342610 CDS YP_662594.1 109899339 4174806 complement(3665745..3666869) 1 NC_008228.1 TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: pha:PSHAa0805 flagellar biosynthesis protein; flagellar biosynthetic protein FlhB 3666869 4174806 Patl_3034 Pseudoalteromonas atlantica T6c flagellar biosynthetic protein FlhB YP_662594.1 3665745 R 342610 CDS YP_662595.1 109899340 4174807 complement(3666882..3667661) 1 NC_008228.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 3667661 fliR 4174807 fliR Pseudoalteromonas atlantica T6c flagellar biosynthesis protein FliR YP_662595.1 3666882 R 342610 CDS YP_662596.1 109899341 4174808 complement(3667663..3667932) 1 NC_008228.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: son:SO3217 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ 3667932 4174808 Patl_3036 Pseudoalteromonas atlantica T6c flagellar biosynthetic protein FliQ YP_662596.1 3667663 R 342610 CDS YP_662597.1 109899342 4174809 complement(3667935..3668690) 1 NC_008228.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 3668690 fliP 4174809 fliP Pseudoalteromonas atlantica T6c flagellar biosynthesis protein FliP YP_662597.1 3667935 R 342610 CDS YP_662598.1 109899343 4174810 complement(3668683..3669183) 1 NC_008228.1 PFAM: flagellar biosynthesis protein, FliO; KEGG: pha:PSHAa0801 flagellar protein; flagellar biosynthesis protein, FliO 3669183 4174810 Patl_3038 Pseudoalteromonas atlantica T6c flagellar biosynthesis protein, FliO YP_662598.1 3668683 R 342610 CDS YP_662599.1 109899344 4174811 complement(3669143..3669538) 1 NC_008228.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 3669538 fliN 4174811 fliN Pseudoalteromonas atlantica T6c flagellar motor switch protein YP_662599.1 3669143 R 342610 CDS YP_662600.1 109899345 4174812 complement(3669559..3670617) 1 NC_008228.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 3670617 fliM 4174812 fliM Pseudoalteromonas atlantica T6c flagellar motor switch protein FliM YP_662600.1 3669559 R 342610 CDS YP_662601.1 109899346 4174813 complement(3670636..3671163) 1 NC_008228.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 3671163 fliL 4174813 fliL Pseudoalteromonas atlantica T6c flagellar basal body-associated protein FliL YP_662601.1 3670636 R 342610 CDS YP_662602.1 109899347 4174814 complement(3671242..3673413) 1 NC_008228.1 PFAM: flagellar hook-length control protein; KEGG: cps:CPS_1507 putative flagellar hook-length control protein; flagellar hook-length control protein 3673413 4174814 Patl_3042 Pseudoalteromonas atlantica T6c flagellar hook-length control protein YP_662602.1 3671242 R 342610 CDS YP_662603.1 109899348 4174815 complement(3673771..3674211) 1 NC_008228.1 TIGRFAM: flagellar export protein FliJ; KEGG: ilo:IL1196 flagellar biosynthesis chaperone; flagellar export protein FliJ 3674211 4174815 Patl_3043 Pseudoalteromonas atlantica T6c flagellar export protein FliJ YP_662603.1 3673771 R 342610 CDS YP_662604.1 109899349 4174816 complement(3674296..3675630) 1 NC_008228.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 3675630 fliI 4174816 fliI Pseudoalteromonas atlantica T6c flagellum-specific ATP synthase YP_662604.1 3674296 R 342610 CDS YP_662605.1 109899350 4174817 complement(3675637..3676437) 1 NC_008228.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 3676437 fliH 4174817 fliH Pseudoalteromonas atlantica T6c flagellar assembly protein H YP_662605.1 3675637 R 342610 CDS YP_662606.1 109899351 4174818 complement(3676465..3677520) 1 NC_008228.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 3677520 fliG 4174818 fliG Pseudoalteromonas atlantica T6c flagellar motor switch protein G YP_662606.1 3676465 R 342610 CDS YP_662607.1 109899352 4174819 complement(3677564..3679270) 1 NC_008228.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 3679270 fliF 4174819 fliF Pseudoalteromonas atlantica T6c flagellar MS-ring protein YP_662607.1 3677564 R 342610 CDS YP_662608.1 109899353 4174820 complement(3679281..3679622) 1 NC_008228.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: cps:CPS_1501 flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex subunit FliE 3679622 4174820 Patl_3048 Pseudoalteromonas atlantica T6c flagellar hook-basal body complex subunit FliE YP_662608.1 3679281 R 342610 CDS YP_662609.1 109899354 4174821 complement(3679949..3681292) 1 NC_008228.1 PFAM: response regulator receiver sigma-54 factor, interaction region helix-turn-helix, Fis-type; SMART: ATPase; KEGG: cps:CPS_1500 flagellar regulatory protein C; two component sigma-54 specific Fis family transcriptional regulator 3681292 4174821 Patl_3049 Pseudoalteromonas atlantica T6c two component sigma-54 specific Fis family transcriptional regulator YP_662609.1 3679949 R 342610 CDS YP_662610.1 109899355 4174822 complement(3681297..3682493) 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: pha:PSHAa0789 sensory box sensor histidine kinase in two-component regulatory system; histidine kinase 3682493 4174822 Patl_3050 Pseudoalteromonas atlantica T6c histidine kinase YP_662610.1 3681297 R 342610 CDS YP_662611.1 109899356 4174823 complement(3682648..3684081) 1 NC_008228.1 PFAM: sigma-54 factor, interaction region helix-turn-helix, Fis-type ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: pha:PSHAa0787 flagellar regulatory protein A (polar flagellae); sigma-54 dependent trancsriptional regulator 3684081 4174823 Patl_3051 Pseudoalteromonas atlantica T6c sigma-54 dependent trancsriptional regulator YP_662611.1 3682648 R 342610 CDS YP_662612.1 109899357 4174824 complement(3684334..3685137) 1 NC_008228.1 PFAM: flagellin-like; KEGG: pha:PSHAa0781 flagellin; flagellin-like protein 3685137 4174824 Patl_3052 Pseudoalteromonas atlantica T6c flagellin-like protein YP_662612.1 3684334 R 342610 CDS YP_662613.1 109899358 4174825 3685539..3689078 1 NC_008228.1 PFAM: protein of unknown function DUF115; KEGG: hch:HCH_04821 hypothetical protein; hypothetical protein 3689078 4174825 Patl_3053 Pseudoalteromonas atlantica T6c hypothetical protein YP_662613.1 3685539 D 342610 CDS YP_662614.1 109899359 4174826 3689153..3689950 1 NC_008228.1 hypothetical protein 3689950 4174826 Patl_3054 Pseudoalteromonas atlantica T6c hypothetical protein YP_662614.1 3689153 D 342610 CDS YP_662615.1 109899360 4174827 complement(3689985..3690764) 1 NC_008228.1 PFAM: Cephalosporin hydroxylase; KEGG: sme:SMb21425 hypothetical protein; cephalosporin hydroxylase 3690764 4174827 Patl_3055 Pseudoalteromonas atlantica T6c cephalosporin hydroxylase YP_662615.1 3689985 R 342610 CDS YP_662616.1 109899361 4174828 complement(3690757..3691467) 1 NC_008228.1 KEGG: mhu:Mhun_3120 hypothetical protein; hypothetical protein 3691467 4174828 Patl_3056 Pseudoalteromonas atlantica T6c hypothetical protein YP_662616.1 3690757 R 342610 CDS YP_662617.1 109899362 4174829 complement(3691468..3692163) 1 NC_008228.1 PFAM: formyl transferase-like; KEGG: sye:Syncc9902_1100 phosphoribosylglycinamide formyltransferase; formyl transferase-like protein 3692163 4174829 Patl_3057 Pseudoalteromonas atlantica T6c formyl transferase-like protein YP_662617.1 3691468 R 342610 CDS YP_662618.1 109899363 4174830 complement(3692166..3692792) 1 NC_008228.1 PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: bte:BTH_I3213 hypothetical protein; type 12 methyltransferase 3692792 4174830 Patl_3058 Pseudoalteromonas atlantica T6c type 12 methyltransferase YP_662618.1 3692166 R 342610 CDS YP_662619.1 109899364 4174831 complement(3692981..3694093) 1 NC_008228.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: syn:slr1615 perosamine synthetase; DegT/DnrJ/EryC1/StrS aminotransferase 3694093 4174831 Patl_3059 Pseudoalteromonas atlantica T6c DegT/DnrJ/EryC1/StrS aminotransferase YP_662619.1 3692981 R 342610 CDS YP_662620.1 109899365 4174832 complement(3694090..3695310) 1 NC_008228.1 PFAM: Methyltransferase type 11 Methyltransferase type 12 Methyltransferase hyptothetical C-methyltransferase; KEGG: syn:slr1610 hypothetical protein; C-methyltransferase 3695310 4174832 Patl_3060 Pseudoalteromonas atlantica T6c C-methyltransferase YP_662620.1 3694090 R 342610 CDS YP_662621.1 109899366 4174833 complement(3695307..3695870) 1 NC_008228.1 PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; KEGG: syn:slr0985 dTDP-4-dehydrorhamnose 3,5-epimerase; dTDP-4-dehydrorhamnose 3,5-epimerase 3695870 4174833 Patl_3061 Pseudoalteromonas atlantica T6c dTDP-4-dehydrorhamnose 3,5-epimerase YP_662621.1 3695307 R 342610 CDS YP_662622.1 109899367 4174834 complement(3695867..3696925) 1 NC_008228.1 TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: syn:slr0984 CDP-glucose 4,6-dehydratase; CDP-glucose 4,6-dehydratase 3696925 4174834 Patl_3062 Pseudoalteromonas atlantica T6c CDP-glucose 4,6-dehydratase YP_662622.1 3695867 R 342610 CDS YP_662623.1 109899368 4174835 complement(3696925..3697692) 1 NC_008228.1 TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: syn:slr0983 alpha-D-glucose-1-phosphate cytidylyltransferase; glucose-1-phosphate cytidylyltransferase 3697692 4174835 Patl_3063 Pseudoalteromonas atlantica T6c glucose-1-phosphate cytidylyltransferase YP_662623.1 3696925 R 342610 CDS YP_662624.1 109899369 4174836 complement(3697689..3699005) 1 NC_008228.1 PFAM: glycosyl transferase, family 2; KEGG: syn:slr1063 hypothetical protein; glycosyl transferase family protein 3699005 4174836 Patl_3064 Pseudoalteromonas atlantica T6c glycosyl transferase family protein YP_662624.1 3697689 R 342610 CDS YP_662625.1 109899370 4174837 complement(3699060..3699929) 1 NC_008228.1 PFAM: glycosyl transferase, family 2; KEGG: cpe:CPE0501 capsular polysaccharide biosynthsis protein; glycosyl transferase family protein 3699929 4174837 Patl_3065 Pseudoalteromonas atlantica T6c glycosyl transferase family protein YP_662625.1 3699060 R 342610 CDS YP_662626.1 109899371 4174838 complement(3700069..3701277) 1 NC_008228.1 PFAM: glycosyl transferase, family 2; KEGG: pho:PH0430 hypothetical protein; glycosyl transferase family protein 3701277 4174838 Patl_3066 Pseudoalteromonas atlantica T6c glycosyl transferase family protein YP_662626.1 3700069 R 342610 CDS YP_662627.1 109899372 4174839 complement(3701279..3702388) 1 NC_008228.1 PFAM: UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: pfl:PFL_3447 hypothetical protein; type 11 methyltransferase 3702388 4174839 Patl_3067 Pseudoalteromonas atlantica T6c type 11 methyltransferase YP_662627.1 3701279 R 342610 CDS YP_662628.1 109899373 4174840 complement(3702385..3703686) 1 NC_008228.1 PFAM: Capsule polysaccharide biosynthesis; KEGG: tcx:Tcr_1514 capsule polysaccharide biosynthesis; capsule polysaccharide biosynthesis 3703686 4174840 Patl_3068 Pseudoalteromonas atlantica T6c capsule polysaccharide biosynthesis YP_662628.1 3702385 R 342610 CDS YP_662629.1 109899374 4174841 complement(3703688..3704863) 1 NC_008228.1 PFAM: UDP-galactopyranose mutase; KEGG: gka:GK3316 UDP-galactopyranose mutase; UDP-galactopyranose mutase 3704863 4174841 Patl_3069 Pseudoalteromonas atlantica T6c UDP-galactopyranose mutase YP_662629.1 3703688 R 342610 CDS YP_662630.1 109899375 4174842 complement(3704864..3705817) 1 NC_008228.1 PFAM: glycosyl transferase, family 2; KEGG: ftu:FTT1452c glycosyltransferase; glycosyl transferase family protein 3705817 4174842 Patl_3070 Pseudoalteromonas atlantica T6c glycosyl transferase family protein YP_662630.1 3704864 R 342610 CDS YP_662631.1 109899376 4174843 complement(3705903..3706628) 1 NC_008228.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: rpa:RPA4596 putative 3-oxoacyl-acyl carrier protein reductase; short-chain dehydrogenase/reductase SDR 3706628 4174843 Patl_3071 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_662631.1 3705903 R 342610 CDS YP_662632.1 109899377 4174844 complement(3706621..3707967) 1 NC_008228.1 KEGG: bja:bll7783 hypothetical protein; hypothetical protein 3707967 4174844 Patl_3072 Pseudoalteromonas atlantica T6c hypothetical protein YP_662632.1 3706621 R 342610 CDS YP_662633.1 109899378 4174845 complement(3707967..3708227) 1 NC_008228.1 KEGG: bja:bsr6286 hypothetical protein; hypothetical protein 3708227 4174845 Patl_3073 Pseudoalteromonas atlantica T6c hypothetical protein YP_662633.1 3707967 R 342610 CDS YP_662634.1 109899379 4174846 complement(3708230..3708835) 1 NC_008228.1 KEGG: ccr:CC1456 flagellin modification protein FlmH; hypothetical protein 3708835 4174846 Patl_3074 Pseudoalteromonas atlantica T6c hypothetical protein YP_662634.1 3708230 R 342610 CDS YP_662635.1 109899380 4174847 complement(3708832..3709953) 1 NC_008228.1 KEGG: cac:CAC2186 glycosyltransferase; spore coat polysaccharide biosynthesis protein glycosyltransferase-like protein 3709953 4174847 Patl_3075 Pseudoalteromonas atlantica T6c spore coat polysaccharide biosynthesis protein glycosyltransferase-like protein YP_662635.1 3708832 R 342610 CDS YP_662636.1 109899381 4174848 complement(3709943..3711010) 1 NC_008228.1 PFAM: N-acetylneuraminic acid synthase-like; KEGG: pfl:PFL_1625 NeuB family protein; N-acylneuraminate-9-phosphate synthase 3711010 4174848 Patl_3076 Pseudoalteromonas atlantica T6c N-acylneuraminate-9-phosphate synthase YP_662636.1 3709943 R 342610 CDS YP_662637.1 109899382 4174849 complement(3711049..3712125) 1 NC_008228.1 hypothetical protein 3712125 4174849 Patl_3077 Pseudoalteromonas atlantica T6c hypothetical protein YP_662637.1 3711049 R 342610 CDS YP_662638.1 109899383 4174850 complement(3712127..3712828) 1 NC_008228.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: ppr:PBPRA2709 putative NeuA; acylneuraminate cytidylyltransferase 3712828 4174850 Patl_3078 Pseudoalteromonas atlantica T6c acylneuraminate cytidylyltransferase YP_662638.1 3712127 R 342610 CDS YP_662639.1 109899384 4174851 complement(3712839..3713975) 1 NC_008228.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: pfo:Pfl_1519 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 3713975 4174851 Patl_3079 Pseudoalteromonas atlantica T6c DegT/DnrJ/EryC1/StrS aminotransferase YP_662639.1 3712839 R 342610 CDS YP_662640.1 109899385 4174852 complement(3713984..3714982) 1 NC_008228.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: son:SO3271 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein CapD 3714982 4174852 Patl_3080 Pseudoalteromonas atlantica T6c polysaccharide biosynthesis protein CapD YP_662640.1 3713984 R 342610 CDS YP_662641.1 109899386 4174853 complement(3715114..3715422) 1 NC_008228.1 hypothetical protein 3715422 4174853 Patl_3081 Pseudoalteromonas atlantica T6c hypothetical protein YP_662641.1 3715114 R 342610 CDS YP_662642.1 109899387 4174854 complement(3715419..3715850) 1 NC_008228.1 PFAM: flagellar protein FliS; KEGG: ilo:IL1133 flagellin-specific chaperone FliS; flagellar protein FliS 3715850 4174854 Patl_3082 Pseudoalteromonas atlantica T6c flagellar protein FliS YP_662642.1 3715419 R 342610 CDS YP_662643.1 109899388 4174855 complement(3715870..3717330) 1 NC_008228.1 PFAM: flagellar hook-associated protein 2-like flagellar hook-associated 2-like flagellin hook IN; KEGG: ilo:IL1134 flagellar capping protein; flagellar hook-associated 2-like protein 3717330 4174855 Patl_3083 Pseudoalteromonas atlantica T6c flagellar hook-associated 2-like protein YP_662643.1 3715870 R 342610 CDS YP_662644.1 109899389 4174856 complement(3717355..3717795) 1 NC_008228.1 PFAM: flagellar protein FlaG protein; KEGG: ppr:PBPRA0914 hypothetical flagellin FlaG; flagellar protein FlaG protein 3717795 4174856 Patl_3084 Pseudoalteromonas atlantica T6c flagellar protein FlaG protein YP_662644.1 3717355 R 342610 CDS YP_662645.1 109899390 4174857 complement(3717919..3718743) 1 NC_008228.1 PFAM: flagellin-like; KEGG: pha:PSHAa0781 flagellin; flagellin-like protein 3718743 4174857 Patl_3085 Pseudoalteromonas atlantica T6c flagellin-like protein YP_662645.1 3717919 R 342610 CDS YP_662646.1 109899391 4174858 3718777..3719160 1 NC_008228.1 hypothetical protein 3719160 4174858 Patl_3086 Pseudoalteromonas atlantica T6c hypothetical protein YP_662646.1 3718777 D 342610 CDS YP_662647.1 109899392 4174859 complement(3720147..3720977) 1 NC_008228.1 PFAM: flagellin-like; KEGG: pha:PSHAa0781 flagellin; flagellin-like protein 3720977 4174859 Patl_3087 Pseudoalteromonas atlantica T6c flagellin-like protein YP_662647.1 3720147 R 342610 CDS YP_662648.1 109899393 4174860 complement(3721373..3722197) 1 NC_008228.1 PFAM: flagellin-like; KEGG: pha:PSHAa0781 flagellin; flagellin-like protein 3722197 4174860 Patl_3088 Pseudoalteromonas atlantica T6c flagellin-like protein YP_662648.1 3721373 R 342610 CDS YP_662649.1 109899394 4174861 3722422..3723393 1 NC_008228.1 KEGG: rba:RB12630 hypothetical protein-signal peptide prediction; signal peptide prediction 3723393 4174861 Patl_3089 Pseudoalteromonas atlantica T6c signal peptide prediction YP_662649.1 3722422 D 342610 CDS YP_662650.1 109899395 4174862 complement(3723453..3724679) 1 NC_008228.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL 3724679 flgL 4174862 flgL Pseudoalteromonas atlantica T6c flagellar hook-associated protein FlgL YP_662650.1 3723453 R 342610 CDS YP_662651.1 109899396 4174863 complement(3724702..3726831) 1 NC_008228.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein protein of unknown function DUF1078-like; KEGG: pha:PSHAa0778 flagellar hook-associated; flagellar hook-associated protein FlgK 3726831 4174863 Patl_3091 Pseudoalteromonas atlantica T6c flagellar hook-associated protein FlgK YP_662651.1 3724702 R 342610 CDS YP_662652.1 109899397 4174864 complement(3726859..3727668) 1 NC_008228.1 KEGG: pha:PSHAa0777 flagellar biosynthesis; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; flagellar rod assembly protein/muramidase FlgJ 3727668 4174864 Patl_3092 Pseudoalteromonas atlantica T6c flagellar rod assembly protein/muramidase FlgJ YP_662652.1 3726859 R 342610 CDS YP_662653.1 109899398 4174865 complement(3727859..3728971) 1 NC_008228.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 3728971 flgI 4174865 flgI Pseudoalteromonas atlantica T6c flagellar basal body P-ring protein YP_662653.1 3727859 R 342610 CDS YP_662654.1 109899399 4174866 complement(3728985..3729677) 1 NC_008228.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein 3729677 flgH 4174866 flgH Pseudoalteromonas atlantica T6c flagellar basal body L-ring protein YP_662654.1 3728985 R 342610 CDS YP_662655.1 109899400 4174867 complement(3729677..3730465) 1 NC_008228.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 3730465 flgG 4174867 flgG Pseudoalteromonas atlantica T6c flagellar basal body rod protein FlgG YP_662655.1 3729677 R 342610 CDS YP_662656.1 109899401 4174868 complement(3730527..3731270) 1 NC_008228.1 TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein protein of unknown function DUF1078-like; KEGG: cps:CPS_1481 flagellar basal-body rod protein FlgF; flagellar basal-body rod protein FlgF 3731270 4174868 Patl_3096 Pseudoalteromonas atlantica T6c flagellar basal-body rod protein FlgF YP_662656.1 3730527 R 342610 CDS YP_662657.1 109899402 4174869 complement(3731448..3732824) 1 NC_008228.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 3732824 flgE 4174869 flgE Pseudoalteromonas atlantica T6c flagellar hook protein FlgE YP_662657.1 3731448 R 342610 CDS YP_662658.1 109899403 4174870 complement(3732839..3733525) 1 NC_008228.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 3733525 flgD 4174870 flgD Pseudoalteromonas atlantica T6c flagellar basal body rod modification protein YP_662658.1 3732839 R 342610 CDS YP_662659.1 109899404 4174871 complement(3733560..3733982) 1 NC_008228.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein protein of unknown function DUF1078-like; KEGG: pha:PSHAa0770 flagellar biosynthesis; cell-proximal portion of basal-body rod; flagellar basal-body rod protein FlgC 3733982 4174871 Patl_3099 Pseudoalteromonas atlantica T6c flagellar basal-body rod protein FlgC YP_662659.1 3733560 R 342610 CDS YP_662660.1 109899405 4174872 complement(3733982..3734383) 1 NC_008228.1 TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: ilo:IL1147 flagellar basal body protein; flagellar basal-body rod protein FlgB 3734383 4174872 Patl_3100 Pseudoalteromonas atlantica T6c flagellar basal-body rod protein FlgB YP_662660.1 3733982 R 342610 CDS YP_662661.1 109899406 4174873 complement(3734476..3735312) 1 NC_008228.1 PFAM: MCP methyltransferase, CheR-type; KEGG: son:SO3251 chemotaxis protein methyltransferase CheR; chemotaxis protein CheR 3735312 4174873 Patl_3101 Pseudoalteromonas atlantica T6c chemotaxis protein CheR YP_662661.1 3734476 R 342610 CDS YP_662662.1 109899407 4174874 complement(3735329..3736249) 1 NC_008228.1 PFAM: response regulator receiver CheW-like protein; KEGG: pha:PSHAa0766 chemotaxis protein; response regulator receiver modulated CheW protein 3736249 4174874 Patl_3102 Pseudoalteromonas atlantica T6c response regulator receiver modulated CheW protein YP_662662.1 3735329 R 342610 CDS YP_662663.1 109899408 4174875 3736403..3737113 1 NC_008228.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 3737113 flgA 4174875 flgA Pseudoalteromonas atlantica T6c flagellar basal body P-ring biosynthesis protein FlgA YP_662663.1 3736403 D 342610 CDS YP_662664.1 109899409 4174876 3737242..3737568 1 NC_008228.1 PFAM: Anti-sigma-28 factor, FlgM; KEGG: cps:CPS_1472 negative regulator of flagellin synthesis FlgM; anti-sigma-28 factor FlgM 3737568 4174876 Patl_3104 Pseudoalteromonas atlantica T6c anti-sigma-28 factor FlgM YP_662664.1 3737242 D 342610 CDS YP_662665.1 109899410 4174877 3737612..3738040 1 NC_008228.1 PFAM: FlgN; KEGG: cps:CPS_1471 putative flagellar protein FlgN; FlgN protein 3738040 4174877 Patl_3105 Pseudoalteromonas atlantica T6c FlgN protein YP_662665.1 3737612 D 342610 CDS YP_662666.1 109899411 4174878 complement(3738337..3738804) 1 NC_008228.1 PFAM: protein of unknown function DUF400; KEGG: pha:PSHAa0762 hypothetical protein; hypothetical protein 3738804 4174878 Patl_3106 Pseudoalteromonas atlantica T6c hypothetical protein YP_662666.1 3738337 R 342610 CDS YP_662667.1 109899412 4174879 3739147..3740253 1 NC_008228.1 KEGG: cps:CPS_1468 putative lipoprotein; putative lipoprotein 3740253 4174879 Patl_3107 Pseudoalteromonas atlantica T6c putative lipoprotein YP_662667.1 3739147 D 342610 CDS YP_662668.1 109899413 4174881 complement(3740624..3741580) 1 NC_008228.1 KEGG: nfa:nfa20300 hypothetical protein; hypothetical protein 3741580 4174881 Patl_3108 Pseudoalteromonas atlantica T6c hypothetical protein YP_662668.1 3740624 R 342610 CDS YP_662669.1 109899414 4174882 3742197..3744413 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: eli:ELI_04405 putative outer membrane receptor protein; TonB-dependent receptor 3744413 4174882 Patl_3109 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_662669.1 3742197 D 342610 CDS YP_662670.1 109899415 4174883 3744696..3745529 1 NC_008228.1 KEGG: sso:SSO1256 microtubule binding protein, putative; hypothetical protein 3745529 4174883 Patl_3110 Pseudoalteromonas atlantica T6c hypothetical protein YP_662670.1 3744696 D 342610 CDS YP_662671.1 109899416 4174884 complement(3745648..3747549) 1 NC_008228.1 PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: cps:CPS_3470 neutral zinc metallopeptidase, M1 family; peptidase M1, membrane alanine aminopeptidase 3747549 4174884 Patl_3111 Pseudoalteromonas atlantica T6c peptidase M1, membrane alanine aminopeptidase YP_662671.1 3745648 R 342610 CDS YP_662672.1 109899417 4174885 3747724..3748308 1 NC_008228.1 PFAM: Smr protein/MutS2; KEGG: son:SO2495 Smr domain protein; Smr protein/MutS2 3748308 4174885 Patl_3112 Pseudoalteromonas atlantica T6c Smr protein/MutS2 YP_662672.1 3747724 D 342610 CDS YP_662673.1 109899418 4174886 complement(3748949..3752836) 1 NC_008228.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 3752836 4174886 Patl_3113 Pseudoalteromonas atlantica T6c phosphoribosylformylglycinamidine synthase YP_662673.1 3748949 R 342610 CDS YP_662674.1 109899419 4174887 3753171..3754742 1 NC_008228.1 PFAM: extracellular solute-binding protein, family 3 Lytic transglycosylase, catalytic; KEGG: cps:CPS_3674 transglycosylase, SLT family; lytic transglycosylase catalytic subunit 3754742 4174887 Patl_3114 Pseudoalteromonas atlantica T6c lytic transglycosylase catalytic subunit YP_662674.1 3753171 D 342610 CDS YP_662675.1 109899420 4174888 complement(3755301..3755789) 1 NC_008228.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: pha:PSHAa2333 tRNA-specific adenosine deaminase; zinc-binding CMP/dCMP deaminase 3755789 4174888 Patl_3115 Pseudoalteromonas atlantica T6c zinc-binding CMP/dCMP deaminase YP_662675.1 3755301 R 342610 CDS YP_662676.1 109899421 4174889 3755996..3756229 1 NC_008228.1 hypothetical protein 3756229 4174889 Patl_3116 Pseudoalteromonas atlantica T6c hypothetical protein YP_662676.1 3755996 D 342610 CDS YP_662677.1 109899422 4174890 complement(3756309..3757436) 1 NC_008228.1 KEGG: vch:VCA0921 hypothetical protein; hypothetical protein 3757436 4174890 Patl_3117 Pseudoalteromonas atlantica T6c hypothetical protein YP_662677.1 3756309 R 342610 CDS YP_662678.1 109899423 4174891 complement(3757574..3758107) 1 NC_008228.1 PFAM: YaeQ; KEGG: dps:DP1290 hypothetical protein; YaeQ protein 3758107 4174891 Patl_3118 Pseudoalteromonas atlantica T6c YaeQ protein YP_662678.1 3757574 R 342610 CDS YP_662679.1 109899424 4174892 complement(3758182..3759759) 1 NC_008228.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 3759759 guaA 4174892 guaA Pseudoalteromonas atlantica T6c GMP synthase YP_662679.1 3758182 R 342610 CDS YP_662680.1 109899425 4174893 complement(3759837..3761306) 1 NC_008228.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 3761306 4174893 Patl_3120 Pseudoalteromonas atlantica T6c inosine 5'-monophosphate dehydrogenase YP_662680.1 3759837 R 342610 CDS YP_662681.1 109899426 4174894 3761410..3762744 1 NC_008228.1 KEGG: vpa:VP0615 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit nucleic acid binding, OB-fold, tRNA/helicase-type; exodeoxyribonuclease VII large subunit 3762744 4174894 Patl_3121 Pseudoalteromonas atlantica T6c exodeoxyribonuclease VII large subunit YP_662681.1 3761410 D 342610 CDS YP_662682.1 109899427 4174895 complement(3762867..3764315) 1 NC_008228.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 3764315 engA 4174895 engA Pseudoalteromonas atlantica T6c GTP-binding protein EngA YP_662682.1 3762867 R 342610 CDS YP_662683.1 109899428 4174896 complement(3764403..3765650) 1 NC_008228.1 with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 3765650 4174896 Patl_3123 Pseudoalteromonas atlantica T6c outer membrane protein assembly complex subunit YfgL YP_662683.1 3764403 R 342610 CDS YP_662684.1 109899429 4174897 complement(3765643..3766266) 1 NC_008228.1 KEGG: pha:PSHAb0136 putative membrane-associated protein with TPR-like domain; TPR-like domain-containing protein 3766266 4174897 Patl_3124 Pseudoalteromonas atlantica T6c TPR-like domain-containing protein YP_662684.1 3765643 R 342610 CDS YP_662685.1 109899430 4174898 complement(3766334..3767614) 1 NC_008228.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 3767614 hisS 4174898 hisS Pseudoalteromonas atlantica T6c histidyl-tRNA synthetase YP_662685.1 3766334 R 342610 CDS YP_662686.1 109899431 4174899 complement(3767728..3768846) 1 NC_008228.1 KEGG: vch:VC0759 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG protein; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 3768846 4174899 Patl_3126 Pseudoalteromonas atlantica T6c 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_662686.1 3767728 R 342610 CDS YP_662687.1 109899432 4174900 complement(3768925..3769962) 1 NC_008228.1 SMART: Helix-turn-helix type 3; KEGG: ilo:IL2035 predicted transcriptional regulator, contains N-terminal xre-type HTH domain; XRE family transcriptional regulator 3769962 4174900 Patl_3127 Pseudoalteromonas atlantica T6c XRE family transcriptional regulator YP_662687.1 3768925 R 342610 CDS YP_662688.1 109899433 4174901 complement(3769999..3770997) 1 NC_008228.1 KEGG: son:SO3314 fimbrial biogenesis and twitching motility protein, putative; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat Peptidoglycan-binding LysM Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; type IV pilus biogenesis/stability protein PilW 3770997 4174901 Patl_3128 Pseudoalteromonas atlantica T6c type IV pilus biogenesis/stability protein PilW YP_662688.1 3769999 R 342610 CDS YP_662689.1 109899434 4174902 complement(3771009..3772151) 1 NC_008228.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 3772151 4174902 Patl_3129 Pseudoalteromonas atlantica T6c ribosomal RNA large subunit methyltransferase N YP_662689.1 3771009 R 342610 CDS YP_662690.1 109899435 4174903 complement(3772284..3772715) 1 NC_008228.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 3772715 ndk 4174903 ndk Pseudoalteromonas atlantica T6c nucleoside diphosphate kinase YP_662690.1 3772284 R 342610 CDS YP_662691.1 109899436 4174904 3772931..3773104 1 NC_008228.1 KEGG: ilo:IL1733 predicted membrane protein; membrane protein 3773104 4174904 Patl_3131 Pseudoalteromonas atlantica T6c membrane protein YP_662691.1 3772931 D 342610 CDS YP_662692.1 109899437 4174905 complement(3773178..3775061) 1 NC_008228.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO1798 peptidyl-prolyl cis-trans isomerase D; PpiC-type peptidyl-prolyl cis-trans isomerase 3775061 4174905 Patl_3132 Pseudoalteromonas atlantica T6c PpiC-type peptidyl-prolyl cis-trans isomerase YP_662692.1 3773178 R 342610 CDS YP_662693.1 109899438 4174906 complement(3775231..3775503) 1 NC_008228.1 PFAM: histone-like DNA-binding protein; KEGG: ilo:IL1002 bacterial nucleoid DNA-binding protein HU-beta; histone-like DNA-binding protein 3775503 4174906 Patl_3133 Pseudoalteromonas atlantica T6c histone-like DNA-binding protein YP_662693.1 3775231 R 342610 CDS YP_662694.1 109899439 4174907 complement(3775742..3778108) 1 NC_008228.1 KEGG: pha:PSHAa2060 DNA-binding ATP-dependent protease La; heat shock K-protein; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon-like AAA ATPase, central region ATPase associated with various cellular activities, AAA_5; SMART: ATPase; ATP-dependent protease La 3778108 4174907 Patl_3134 Pseudoalteromonas atlantica T6c ATP-dependent protease La YP_662694.1 3775742 R 342610 CDS YP_662695.1 109899440 4174908 complement(3778354..3779631) 1 NC_008228.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 3779631 clpX 4174908 clpX Pseudoalteromonas atlantica T6c ATP-dependent protease ATP-binding subunit ClpX YP_662695.1 3778354 R 342610 CDS YP_662696.1 109899441 4174909 complement(3779722..3780360) 1 NC_008228.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 3780360 clpP 4174909 clpP Pseudoalteromonas atlantica T6c ATP-dependent Clp protease proteolytic subunit YP_662696.1 3779722 R 342610 CDS YP_662697.1 109899442 4174910 complement(3780448..3781758) 1 NC_008228.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 3781758 tig 4174910 tig Pseudoalteromonas atlantica T6c trigger factor YP_662697.1 3780448 R 342610 CDS YP_662698.1 109899443 4174915 complement(3782671..3783303) 1 NC_008228.1 KEGG: ppr:PBPRA0653 hypothetical protein; hypothetical protein 3783303 4174915 Patl_3138 Pseudoalteromonas atlantica T6c hypothetical protein YP_662698.1 3782671 R 342610 CDS YP_662699.1 109899444 4174916 3783473..3784330 1 NC_008228.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 3784330 4174916 Patl_3139 Pseudoalteromonas atlantica T6c bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_662699.1 3783473 D 342610 CDS YP_662700.1 109899445 4174917 3784347..3784907 1 NC_008228.1 PFAM: protein of unknown function DUF1415; KEGG: ilo:IL2495 hypothetical protein; hypothetical protein 3784907 4174917 Patl_3140 Pseudoalteromonas atlantica T6c hypothetical protein YP_662700.1 3784347 D 342610 CDS YP_662701.1 109899446 4174918 complement(3784956..3785996) 1 NC_008228.1 KEGG: mca:MCA1564 hypothetical protein; hypothetical protein 3785996 4174918 Patl_3141 Pseudoalteromonas atlantica T6c hypothetical protein YP_662701.1 3784956 R 342610 CDS YP_662702.1 109899447 4174919 complement(3785993..3787873) 1 NC_008228.1 KEGG: mca:MCA1563 hypothetical protein; hypothetical protein 3787873 4174919 Patl_3142 Pseudoalteromonas atlantica T6c hypothetical protein YP_662702.1 3785993 R 342610 CDS YP_662703.1 109899448 4174920 complement(3787876..3788610) 1 NC_008228.1 PFAM: ABC-2 type transporter; KEGG: pae:PA3671 putative ABC-2 type transport system permease protein; ABC transporter 3788610 4174920 Patl_3143 Pseudoalteromonas atlantica T6c ABC transporter YP_662703.1 3787876 R 342610 CDS YP_662704.1 109899449 4174921 complement(3788613..3789533) 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: pae:PA3672 putative ABC-2 type transport system ATP-binding protein; ABC transporter-like protein 3789533 4174921 Patl_3144 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_662704.1 3788613 R 342610 CDS YP_662705.1 109899450 4174922 3789674..3790387 1 NC_008228.1 KEGG: ilo:IL1877 uncharacterized conserved membrane protein, smp family; hypothetical protein 3790387 4174922 Patl_3145 Pseudoalteromonas atlantica T6c hypothetical protein YP_662705.1 3789674 D 342610 CDS YP_662706.1 109899451 4174923 complement(3790384..3791154) 1 NC_008228.1 PFAM: TatD-related deoxyribonuclease; KEGG: ilo:IL1878 Mg-dependent DNase homolog; TatD-related deoxyribonuclease 3791154 4174923 Patl_3146 Pseudoalteromonas atlantica T6c TatD-related deoxyribonuclease YP_662706.1 3790384 R 342610 CDS YP_662707.1 109899452 4174924 complement(3791167..3791808) 1 NC_008228.1 KEGG: pha:PSHAa0658 pyridoxine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase 3791808 4174924 Patl_3147 Pseudoalteromonas atlantica T6c pyridoxamine 5'-phosphate oxidase YP_662707.1 3791167 R 342610 CDS YP_662708.1 109899453 4174925 complement(3791886..3792788) 1 NC_008228.1 TIGRFAM: small GTP-binding protein GTP-binding GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related KH, type 2; KEGG: pha:PSHAa0733 GTP-binding protein era; GTP-binding protein Era 3792788 4174925 Patl_3148 Pseudoalteromonas atlantica T6c GTP-binding protein Era YP_662708.1 3791886 R 342610 CDS YP_662709.1 109899454 4174926 complement(3792781..3793464) 1 NC_008228.1 PFAM: ribonuclease III double-stranded RNA binding; KEGG: cps:CPS_4122 ribonuclease III; ribonuclease III 3793464 4174926 Patl_3149 Pseudoalteromonas atlantica T6c ribonuclease III YP_662709.1 3792781 R 342610 CDS YP_662710.1 109899455 4174927 complement(3793465..3794370) 1 NC_008228.1 KEGG: ilo:IL0811 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I 3794370 4174927 Patl_3150 Pseudoalteromonas atlantica T6c signal peptidase I YP_662710.1 3793465 R 342610 CDS YP_662711.1 109899456 4174928 complement(3794371..3796167) 1 NC_008228.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 3796167 4174928 Patl_3151 Pseudoalteromonas atlantica T6c GTP-binding protein LepA YP_662711.1 3794371 R 342610 CDS YP_662712.1 109899457 4174929 complement(3796351..3796854) 1 NC_008228.1 PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: vpa:VP2575 sigma-E factor regulatory protein RseC; sigma E positive regulator RseC/MucC 3796854 4174929 Patl_3152 Pseudoalteromonas atlantica T6c sigma E positive regulator RseC/MucC YP_662712.1 3796351 R 342610 CDS YP_662713.1 109899458 4174930 complement(3796856..3797857) 1 NC_008228.1 PFAM: MucB/RseB; KEGG: cps:CPS_4127 sigma-E factor regulatory protein RseB; sigma E regulatory protein MucB/RseB 3797857 4174930 Patl_3153 Pseudoalteromonas atlantica T6c sigma E regulatory protein MucB/RseB YP_662713.1 3796856 R 342610 CDS YP_662714.1 109899459 4174931 complement(3797898..3798500) 1 NC_008228.1 KEGG: son:SO1343 sigma-E factor negative regulatory protein; sigma-E factor negative regulatory protein 3798500 4174931 Patl_3154 Pseudoalteromonas atlantica T6c sigma-E factor negative regulatory protein YP_662714.1 3797898 R 342610 CDS YP_662715.1 109899460 4174932 complement(3798637..3799215) 1 NC_008228.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 3799215 4174932 Patl_3155 Pseudoalteromonas atlantica T6c RNA polymerase sigma factor RpoE YP_662715.1 3798637 R 342610 CDS YP_662716.1 109899461 4174933 3799456..3801060 1 NC_008228.1 KEGG: vpa:VP2580 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like FAD dependent oxidoreductase; L-aspartate oxidase 3801060 4174933 Patl_3156 Pseudoalteromonas atlantica T6c L-aspartate oxidase YP_662716.1 3799456 D 342610 CDS YP_662717.1 109899462 4174934 complement(3801063..3802025) 1 NC_008228.1 PFAM: MaoC-like dehydratase; KEGG: son:SO0559 MaoC domain protein; MaoC-like dehydratase 3802025 4174934 Patl_3157 Pseudoalteromonas atlantica T6c MaoC-like dehydratase YP_662717.1 3801063 R 342610 CDS YP_662718.1 109899463 4174935 complement(3802048..3802467) 1 NC_008228.1 hypothetical protein 3802467 4174935 Patl_3158 Pseudoalteromonas atlantica T6c hypothetical protein YP_662718.1 3802048 R 342610 CDS YP_662719.1 109899464 4174936 complement(3802490..3802741) 1 NC_008228.1 PFAM: protein of unknown function DUF339; KEGG: ilo:IL0819 hypothetical protein; hypothetical protein 3802741 4174936 Patl_3159 Pseudoalteromonas atlantica T6c hypothetical protein YP_662719.1 3802490 R 342610 CDS YP_662720.1 109899465 4174937 3802899..3803858 1 NC_008228.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: ppr:PBPRA3100 hypothetical protein; glycine cleavage T protein (aminomethyl transferase) 3803858 4174937 Patl_3160 Pseudoalteromonas atlantica T6c glycine cleavage T protein (aminomethyl transferase) YP_662720.1 3802899 D 342610 CDS YP_662721.1 109899466 4174938 3803927..3804412 1 NC_008228.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pha:PSHAa0721 FKBP-type peptidyl prolyl cis-trans isomerase (rotamase); FKBP-type peptidylprolyl isomerase 3804412 4174938 Patl_3161 Pseudoalteromonas atlantica T6c FKBP-type peptidylprolyl isomerase YP_662721.1 3803927 D 342610 CDS YP_662722.1 109899467 4174939 complement(3804517..3804855) 1 NC_008228.1 PFAM: nitrogen regulatory protein P-II; KEGG: ilo:IL1185 nitrogen regulatory protein PII; nitrogen regulatory protein P-II 3804855 4174939 Patl_3162 Pseudoalteromonas atlantica T6c nitrogen regulatory protein P-II YP_662722.1 3804517 R 342610 CDS YP_662723.1 109899468 4174940 complement(3804880..3805710) 1 NC_008228.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 3805710 nadE 4174940 nadE Pseudoalteromonas atlantica T6c NAD synthetase YP_662723.1 3804880 R 342610 CDS YP_662724.1 109899469 4174941 complement(3805809..3807473) 1 NC_008228.1 TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: tbd:Tbd_1861 hypothetical protein; prepilin-type cleavage/methylation-like protein 3807473 4174941 Patl_3164 Pseudoalteromonas atlantica T6c prepilin-type cleavage/methylation-like protein YP_662724.1 3805809 R 342610 CDS YP_662725.1 109899470 4174942 complement(3807474..3808610) 1 NC_008228.1 KEGG: tbd:Tbd_1862 hypothetical protein; hypothetical protein 3808610 4174942 Patl_3165 Pseudoalteromonas atlantica T6c hypothetical protein YP_662725.1 3807474 R 342610 CDS YP_662726.1 109899471 4174943 complement(3808600..3809232) 1 NC_008228.1 TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: eba:ebA5111 hypothetical protein; prepilin-type cleavage/methylation-like protein 3809232 4174943 Patl_3166 Pseudoalteromonas atlantica T6c prepilin-type cleavage/methylation-like protein YP_662726.1 3808600 R 342610 CDS YP_662727.1 109899472 4174944 complement(3809226..3809687) 1 NC_008228.1 KEGG: eba:ebA5112 fimbrial protein pilin similar to FimU; hypothetical protein 3809687 4174944 Patl_3167 Pseudoalteromonas atlantica T6c hypothetical protein YP_662727.1 3809226 R 342610 CDS YP_662728.1 109899473 4174945 3809971..3810363 1 NC_008228.1 PFAM: methylation; KEGG: tbd:Tbd_1865 pilus assembly protein; prepilin-type cleavage/methylation protein 3810363 4174945 Patl_3168 Pseudoalteromonas atlantica T6c prepilin-type cleavage/methylation protein YP_662728.1 3809971 D 342610 CDS YP_662729.1 109899474 4174946 3810459..3811031 1 NC_008228.1 PFAM: methylation; KEGG: xoo:XOO3202 pre-pilin like leader sequence; prepilin-type cleavage/methylation protein 3811031 4174946 Patl_3169 Pseudoalteromonas atlantica T6c prepilin-type cleavage/methylation protein YP_662729.1 3810459 D 342610 CDS YP_662730.1 109899475 4174947 complement(3811056..3811523) 1 NC_008228.1 PFAM: methylation; KEGG: noc:Noc_2275 general secretion pathway protein H; prepilin-type cleavage/methylation protein 3811523 4174947 Patl_3170 Pseudoalteromonas atlantica T6c prepilin-type cleavage/methylation protein YP_662730.1 3811056 R 342610 CDS YP_662731.1 109899476 4174948 complement(3811531..3815625) 1 NC_008228.1 KEGG: son:SO3525 type IV pilin biogenesis protein, putative; Tfp pilus assembly protein tip-associated adhesin PilY1-like protein 3815625 4174948 Patl_3171 Pseudoalteromonas atlantica T6c Tfp pilus assembly protein tip-associated adhesin PilY1-like protein YP_662731.1 3811531 R 342610 CDS YP_662732.1 109899477 4174949 complement(3815622..3816224) 1 NC_008228.1 hypothetical protein 3816224 4174949 Patl_3172 Pseudoalteromonas atlantica T6c hypothetical protein YP_662732.1 3815622 R 342610 CDS YP_662733.1 109899478 4174950 complement(3816221..3817087) 1 NC_008228.1 TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: reu:Reut_A0785 putative Tfp pilus assembly protein PilW; prepilin-type cleavage/methylation-like protein 3817087 4174950 Patl_3173 Pseudoalteromonas atlantica T6c prepilin-type cleavage/methylation-like protein YP_662733.1 3816221 R 342610 CDS YP_662734.1 109899479 4174951 complement(3817099..3817674) 1 NC_008228.1 hypothetical protein 3817674 4174951 Patl_3174 Pseudoalteromonas atlantica T6c hypothetical protein YP_662734.1 3817099 R 342610 CDS YP_662735.1 109899480 4174952 complement(3817973..3818917) 1 NC_008228.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 3818917 ispH 4174952 ispH Pseudoalteromonas atlantica T6c 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_662735.1 3817973 R 342610 CDS YP_662736.1 109899481 4174953 complement(3818963..3819406) 1 NC_008228.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pha:PSHAa0920 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase); FKBP-type peptidylprolyl isomerase 3819406 4174953 Patl_3176 Pseudoalteromonas atlantica T6c FKBP-type peptidylprolyl isomerase YP_662736.1 3818963 R 342610 CDS YP_662737.1 109899482 4174954 complement(3819399..3819893) 1 NC_008228.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 3819893 lspA 4174954 lspA Pseudoalteromonas atlantica T6c lipoprotein signal peptidase YP_662737.1 3819399 R 342610 CDS YP_662738.1 109899483 4174955 complement(3819886..3822714) 1 NC_008228.1 TIGRFAM: isoleucyl-tRNA synthetase; KEGG: vvy:VV0687 isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase 3822714 4174955 Patl_3178 Pseudoalteromonas atlantica T6c isoleucyl-tRNA synthetase YP_662738.1 3819886 R 342610 CDS YP_662739.1 109899484 4174956 complement(3822756..3823682) 1 NC_008228.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: vpa:VP0533 riboflavin kinase/FMN adenylyltransferase; riboflavin biosynthesis protein RibF 3823682 4174956 Patl_3179 Pseudoalteromonas atlantica T6c riboflavin biosynthesis protein RibF YP_662739.1 3822756 R 342610 CDS YP_662740.1 109899485 4174957 complement(3823878..3825449) 1 NC_008228.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN-like; KEGG: son:SO3534 MviN protein; integral membrane protein MviN 3825449 4174957 Patl_3180 Pseudoalteromonas atlantica T6c integral membrane protein MviN YP_662740.1 3823878 R 342610 CDS YP_662741.1 109899486 4174958 3825927..3826190 1 NC_008228.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 3826190 rpsT 4174958 rpsT Pseudoalteromonas atlantica T6c 30S ribosomal protein S20 YP_662741.1 3825927 D 342610 CDS YP_662742.1 109899487 4174959 3826705..3828123 1 NC_008228.1 PFAM: peptidase M20 protease-associated PA peptidase M28; KEGG: son:SO3539 peptidase, M28D family; peptidase M28 3828123 4174959 Patl_3182 Pseudoalteromonas atlantica T6c peptidase M28 YP_662742.1 3826705 D 342610 CDS YP_662743.1 109899488 4174960 complement(3828225..3828671) 1 NC_008228.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: ppr:PBPRA2972 hypothetical protein; flavodoxin/nitric oxide synthase 3828671 4174960 Patl_3183 Pseudoalteromonas atlantica T6c flavodoxin/nitric oxide synthase YP_662743.1 3828225 R 342610 CDS YP_662744.1 109899489 4174961 complement(3828705..3829463) 1 NC_008228.1 PFAM: pseudouridine synthase; KEGG: vfi:VF0613 tRNA pseudouridine synthase C; pseudouridylate synthase 3829463 4174961 Patl_3184 Pseudoalteromonas atlantica T6c pseudouridylate synthase YP_662744.1 3828705 R 342610 CDS YP_662745.1 109899490 4174962 complement(3829463..3829819) 1 NC_008228.1 KEGG: cps:CPS_3650 hypothetical protein; hypothetical protein 3829819 4174962 Patl_3185 Pseudoalteromonas atlantica T6c hypothetical protein YP_662745.1 3829463 R 342610 CDS YP_662746.1 109899491 4174963 3829879..3830904 1 NC_008228.1 KEGG: pha:PSHAa1972 hypothetical protein; hypothetical protein 3830904 4174963 Patl_3186 Pseudoalteromonas atlantica T6c hypothetical protein YP_662746.1 3829879 D 342610 CDS YP_662747.1 109899492 4174964 3830901..3831206 1 NC_008228.1 KEGG: ilo:IL0852 hypothetical protein; hypothetical protein 3831206 4174964 Patl_3187 Pseudoalteromonas atlantica T6c hypothetical protein YP_662747.1 3830901 D 342610 CDS YP_662748.1 109899493 4174965 complement(3832165..3832809) 1 NC_008228.1 KEGG: cps:CPS_3529 hypothetical protein; hypothetical protein 3832809 4174965 Patl_3188 Pseudoalteromonas atlantica T6c hypothetical protein YP_662748.1 3832165 R 342610 CDS YP_662749.1 109899494 4174966 3832923..3833153 1 NC_008228.1 KEGG: pfo:Pfl_0169 hypothetical protein; hypothetical protein 3833153 4174966 Patl_3189 Pseudoalteromonas atlantica T6c hypothetical protein YP_662749.1 3832923 D 342610 CDS YP_662750.1 109899495 4174967 complement(3833229..3833597) 1 NC_008228.1 KEGG: son:SO1612 hypothetical protein; hypothetical protein 3833597 4174967 Patl_3190 Pseudoalteromonas atlantica T6c hypothetical protein YP_662750.1 3833229 R 342610 CDS YP_662751.1 109899496 4174968 3833788..3834078 1 NC_008228.1 hypothetical protein 3834078 4174968 Patl_3191 Pseudoalteromonas atlantica T6c hypothetical protein YP_662751.1 3833788 D 342610 CDS YP_662752.1 109899497 4174969 complement(3834083..3834643) 1 NC_008228.1 putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 3834643 4174969 Patl_3192 Pseudoalteromonas atlantica T6c SecY interacting protein Syd YP_662752.1 3834083 R 342610 CDS YP_662753.1 109899498 4174970 3834770..3835609 1 NC_008228.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3835609 queF 4174970 queF Pseudoalteromonas atlantica T6c 7-cyano-7-deazaguanine reductase YP_662753.1 3834770 D 342610 CDS YP_662754.1 109899499 4174971 3835682..3837037 1 NC_008228.1 PFAM: conserved hypothetical protein 730; KEGG: cps:CPS_3537 lysine decarboxylase family protein; hypothetical protein 3837037 4174971 Patl_3194 Pseudoalteromonas atlantica T6c hypothetical protein YP_662754.1 3835682 D 342610 CDS YP_662755.1 109899500 4174972 3837125..3837499 1 NC_008228.1 KEGG: ilo:IL0859 SmpA/OmlA family lipoprotein; SmpA/OmlA family lipoprotein 3837499 4174972 Patl_3195 Pseudoalteromonas atlantica T6c SmpA/OmlA family lipoprotein YP_662755.1 3837125 D 342610 CDS YP_662756.1 109899501 4174973 3837514..3839271 1 NC_008228.1 putative signal transduction protein 3839271 4174973 Patl_3196 Pseudoalteromonas atlantica T6c putative signal transduction protein YP_662756.1 3837514 D 342610 CDS YP_662757.1 109899502 4174974 3839447..3840454 1 NC_008228.1 catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 3840454 4174974 Patl_3197 Pseudoalteromonas atlantica T6c isocitrate dehydrogenase YP_662757.1 3839447 D 342610 CDS YP_662758.1 109899503 4174975 3840613..3840921 1 NC_008228.1 KEGG: pha:PSHAa0835 competence protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding, class 1; helix-hairpin-helix repeat-containing competence protein ComEA 3840921 4174975 Patl_3198 Pseudoalteromonas atlantica T6c helix-hairpin-helix repeat-containing competence protein ComEA YP_662758.1 3840613 D 342610 CDS YP_662759.1 109899504 4174976 complement(3841002..3841895) 1 NC_008228.1 KEGG: ppr:PBPRA2674 putative UTP-glucose-1-phosphateuridylyltransferase, galU; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase 3841895 4174976 Patl_3199 Pseudoalteromonas atlantica T6c UTP-glucose-1-phosphate uridylyltransferase YP_662759.1 3841002 R 342610 CDS YP_662760.1 109899505 4174977 complement(3841897..3843237) 1 NC_008228.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: hch:HCH_04682 UDP-glucose dehydrogenase; UDP-glucose 6-dehydrogenase 3843237 4174977 Patl_3200 Pseudoalteromonas atlantica T6c UDP-glucose 6-dehydrogenase YP_662760.1 3841897 R 342610 CDS YP_662761.1 109899506 4174978 3843668..3844024 1 NC_008228.1 KEGG: ilo:IL0566 hypothetical protein; hypothetical protein 3844024 4174978 Patl_3201 Pseudoalteromonas atlantica T6c hypothetical protein YP_662761.1 3843668 D 342610 CDS YP_662762.1 109899507 4174979 3844112..3844786 1 NC_008228.1 KEGG: sdy:SDY_0962 putative regulator; hypothetical protein 3844786 4174979 Patl_3202 Pseudoalteromonas atlantica T6c hypothetical protein YP_662762.1 3844112 D 342610 CDS YP_662763.1 109899508 4174980 3844805..3845548 1 NC_008228.1 PFAM: protein of unknown function DUF1017; KEGG: son:SO3158 polysaccharide synthesis-related protein; hypothetical protein 3845548 4174980 Patl_3203 Pseudoalteromonas atlantica T6c hypothetical protein YP_662763.1 3844805 D 342610 CDS YP_662764.1 109899509 4174981 3845545..3847674 1 NC_008228.1 PFAM: protein of unknown function DUF940, membrane lipoprotein putative; KEGG: sfx:S3555 hypothetical protein; hypothetical protein 3847674 4174981 Patl_3204 Pseudoalteromonas atlantica T6c hypothetical protein YP_662764.1 3845545 D 342610 CDS YP_662765.1 109899510 4174982 complement(3847863..3848729) 1 NC_008228.1 KEGG: noc:Noc_2177 rhamnosyltransferase; rhamnosyltransferase 3848729 4174982 Patl_3205 Pseudoalteromonas atlantica T6c rhamnosyltransferase YP_662765.1 3847863 R 342610 CDS YP_662766.1 109899511 4174983 complement(3848726..3849502) 1 NC_008228.1 KEGG: vfi:VF0175 glycosyltransferase; glycosyltransferase 3849502 4174983 Patl_3206 Pseudoalteromonas atlantica T6c glycosyltransferase YP_662766.1 3848726 R 342610 CDS YP_662767.1 109899512 4174984 complement(3849839..3851569) 1 NC_008228.1 PFAM: glycosyl transferase, family 2; KEGG: pst:PSPTO1074 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 3851569 4174984 Patl_3207 Pseudoalteromonas atlantica T6c glycosyl transferase family protein YP_662767.1 3849839 R 342610 CDS YP_662768.1 109899513 4174985 complement(3851639..3852736) 1 NC_008228.1 hypothetical protein 3852736 4174985 Patl_3208 Pseudoalteromonas atlantica T6c hypothetical protein YP_662768.1 3851639 R 342610 CDS YP_662769.1 109899514 4174986 complement(3852928..3854097) 1 NC_008228.1 KEGG: mca:MCA0624 hypothetical protein; hypothetical protein 3854097 4174986 Patl_3209 Pseudoalteromonas atlantica T6c hypothetical protein YP_662769.1 3852928 R 342610 CDS YP_662770.1 109899515 4174987 complement(3854192..3855277) 1 NC_008228.1 KEGG: syd:Syncc9605_2166 hypothetical protein; hypothetical protein 3855277 4174987 Patl_3210 Pseudoalteromonas atlantica T6c hypothetical protein YP_662770.1 3854192 R 342610 CDS YP_662771.1 109899516 4174988 complement(3855288..3855686) 1 NC_008228.1 TIGRFAM: cytidyltransferase-related domain; PFAM: Riboflavin kinase / FAD synthetase cytidylyltransferase; KEGG: cps:CPS_4205 glycerol-3-phosphate cytidyltransferase; cytidyltransferase-like protein 3855686 4174988 Patl_3211 Pseudoalteromonas atlantica T6c cytidyltransferase-like protein YP_662771.1 3855288 R 342610 CDS YP_662772.1 109899517 4174989 complement(3855702..3856979) 1 NC_008228.1 PFAM: coagulation factor 5/8 type-like; KEGG: jan:Jann_0820 hypothetical protein; coagulation factor 5/8 type-like protein 3856979 4174989 Patl_3212 Pseudoalteromonas atlantica T6c coagulation factor 5/8 type-like protein YP_662772.1 3855702 R 342610 CDS YP_662773.1 109899518 4174990 complement(3857007..3858962) 1 NC_008228.1 KEGG: jan:Jann_0820 hypothetical protein; hypothetical protein 3858962 4174990 Patl_3213 Pseudoalteromonas atlantica T6c hypothetical protein YP_662773.1 3857007 R 342610 CDS YP_662774.1 109899519 4174991 complement(3859108..3860157) 1 NC_008228.1 hypothetical protein 3860157 4174991 Patl_3214 Pseudoalteromonas atlantica T6c hypothetical protein YP_662774.1 3859108 R 342610 CDS YP_662775.1 109899520 4174992 complement(3860382..3861755) 1 NC_008228.1 KEGG: psp:PSPPH_0971 hypothetical protein; hypothetical protein 3861755 4174992 Patl_3215 Pseudoalteromonas atlantica T6c hypothetical protein YP_662775.1 3860382 R 342610 CDS YP_662776.1 109899521 4174993 complement(3861801..3863045) 1 NC_008228.1 PFAM: glycosyl transferase, group 1; KEGG: sme:SMb21308 putative glycosyltransferase, forming alpha glycosyl linkages protein; group 1 glycosyl transferase 3863045 4174993 Patl_3216 Pseudoalteromonas atlantica T6c group 1 glycosyl transferase YP_662776.1 3861801 R 342610 CDS YP_662777.1 109899522 4174994 complement(3863042..3864493) 1 NC_008228.1 PFAM: glycosyl transferase, family 2; KEGG: sme:SMb21313 putative bifunctional glycosyltransferase, forming alpha-glycosyl and beta-glycosyl linkages protein; glycosyl transferase family protein 3864493 4174994 Patl_3217 Pseudoalteromonas atlantica T6c glycosyl transferase family protein YP_662777.1 3863042 R 342610 CDS YP_662778.1 109899523 4174995 3864632..3867340 1 NC_008228.1 PFAM: glycosyl transferase, family 2 glycosyl transferase, group 1; KEGG: xcc:XCC2933 glycosyl transferase; glycosyl transferase family protein 3867340 4174995 Patl_3218 Pseudoalteromonas atlantica T6c glycosyl transferase family protein YP_662778.1 3864632 D 342610 CDS YP_662779.1 109899524 4174996 3867372..3868361 1 NC_008228.1 hypothetical protein 3868361 4174996 Patl_3219 Pseudoalteromonas atlantica T6c hypothetical protein YP_662779.1 3867372 D 342610 CDS YP_662780.1 109899525 4174997 complement(3868384..3870405) 1 NC_008228.1 PFAM: glycosyl transferase, group 1; KEGG: rsp:RSP_3985 hypothetical protein; group 1 glycosyl transferase 3870405 4174997 Patl_3220 Pseudoalteromonas atlantica T6c group 1 glycosyl transferase YP_662780.1 3868384 R 342610 CDS YP_662781.1 109899526 4174998 complement(3870405..3871286) 1 NC_008228.1 KEGG: sye:Syncc9902_0124 hypothetical protein; hypothetical protein 3871286 4174998 Patl_3221 Pseudoalteromonas atlantica T6c hypothetical protein YP_662781.1 3870405 R 342610 CDS YP_662782.1 109899527 4174999 complement(3871373..3872293) 1 NC_008228.1 hypothetical protein 3872293 4174999 Patl_3222 Pseudoalteromonas atlantica T6c hypothetical protein YP_662782.1 3871373 R 342610 CDS YP_662783.1 109899528 4175000 3872446..3873228 1 NC_008228.1 KEGG: sye:Syncc9902_0128 hypothetical protein; hypothetical protein 3873228 4175000 Patl_3223 Pseudoalteromonas atlantica T6c hypothetical protein YP_662783.1 3872446 D 342610 CDS YP_662784.1 109899529 4175001 complement(3873350..3874237) 1 NC_008228.1 hypothetical protein 3874237 4175001 Patl_3224 Pseudoalteromonas atlantica T6c hypothetical protein YP_662784.1 3873350 R 342610 CDS YP_662785.1 109899530 4175002 complement(3874320..3875657) 1 NC_008228.1 KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein; hypothetical protein 3875657 4175002 Patl_3225 Pseudoalteromonas atlantica T6c hypothetical protein YP_662785.1 3874320 R 342610 CDS YP_662786.1 109899531 4175003 complement(3876057..3877016) 1 NC_008228.1 hypothetical protein 3877016 4175003 Patl_3226 Pseudoalteromonas atlantica T6c hypothetical protein YP_662786.1 3876057 R 342610 CDS YP_662787.1 109899532 4175004 complement(3877013..3877666) 1 NC_008228.1 PFAM: methylation; prepilin-type cleavage/methylation protein 3877666 4175004 Patl_3227 Pseudoalteromonas atlantica T6c prepilin-type cleavage/methylation protein YP_662787.1 3877013 R 342610 CDS YP_662788.1 109899533 4175005 complement(3877673..3878089) 1 NC_008228.1 PFAM: methylation; prepilin-type cleavage/methylation protein 3878089 4175005 Patl_3228 Pseudoalteromonas atlantica T6c prepilin-type cleavage/methylation protein YP_662788.1 3877673 R 342610 CDS YP_662789.1 109899534 4175006 complement(3878076..3878504) 1 NC_008228.1 PFAM: methylation; prepilin-type cleavage/methylation protein 3878504 4175006 Patl_3229 Pseudoalteromonas atlantica T6c prepilin-type cleavage/methylation protein YP_662789.1 3878076 R 342610 CDS YP_662790.1 109899535 4175007 complement(3878506..3878925) 1 NC_008228.1 TIGRFAM: general secretion pathway protein G; PFAM: methylation type II secretion system protein G; KEGG: pae:PA2675 probable type II secretion system protein; general secretion pathway protein G 3878925 4175007 Patl_3230 Pseudoalteromonas atlantica T6c general secretion pathway protein G YP_662790.1 3878506 R 342610 CDS YP_662791.1 109899536 4175008 complement(3879049..3880239) 1 NC_008228.1 PFAM: type II secretion system protein; KEGG: pae:PA2676 probable type II secretion system protein; type II secretion system protein 3880239 4175008 Patl_3231 Pseudoalteromonas atlantica T6c type II secretion system protein YP_662791.1 3879049 R 342610 CDS YP_662792.1 109899537 4175009 complement(3880236..3881873) 1 NC_008228.1 PFAM: type II secretion system protein E; SMART: ATPase; KEGG: pae:PA2677 probable type II secretion protein; type II secretion system protein E 3881873 4175009 Patl_3232 Pseudoalteromonas atlantica T6c type II secretion system protein E YP_662792.1 3880236 R 342610 CDS YP_662793.1 109899538 4175010 3882081..3883031 1 NC_008228.1 hypothetical protein 3883031 4175010 Patl_3233 Pseudoalteromonas atlantica T6c hypothetical protein YP_662793.1 3882081 D 342610 CDS YP_662794.1 109899539 4175011 3883028..3883609 1 NC_008228.1 hypothetical protein 3883609 4175011 Patl_3234 Pseudoalteromonas atlantica T6c hypothetical protein YP_662794.1 3883028 D 342610 CDS YP_662795.1 109899540 4175012 3883602..3884063 1 NC_008228.1 hypothetical protein 3884063 4175012 Patl_3235 Pseudoalteromonas atlantica T6c hypothetical protein YP_662795.1 3883602 D 342610 CDS YP_662796.1 109899541 4175013 3884106..3886241 1 NC_008228.1 PFAM: type II and III secretion system protein NolW-like; KEGG: pae:PA1382 probable type II secretion system protein; type II and III secretion system protein 3886241 4175013 Patl_3236 Pseudoalteromonas atlantica T6c type II and III secretion system protein YP_662796.1 3884106 D 342610 CDS YP_662797.1 109899542 4175014 complement(3886380..3886871) 1 NC_008228.1 hypothetical protein 3886871 4175014 Patl_3237 Pseudoalteromonas atlantica T6c hypothetical protein YP_662797.1 3886380 R 342610 CDS YP_662798.1 109899543 4175015 complement(3887354..3888805) 1 NC_008228.1 PFAM: lipopolysaccharide biosynthesis; KEGG: ecc:c3687 kpsE; putative capsule polysaccharide export transport system permease protein; lipopolysaccharide biosynthesis protein 3888805 4175015 Patl_3238 Pseudoalteromonas atlantica T6c lipopolysaccharide biosynthesis protein YP_662798.1 3887354 R 342610 CDS YP_662799.1 109899544 4175016 complement(3888808..3889458) 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: cjr:CJE1620 capsular polysaccharide ABC transporter, ATP-binding protein; ABC transporter-like protein 3889458 4175016 Patl_3239 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_662799.1 3888808 R 342610 CDS YP_662800.1 109899545 4175017 complement(3889455..3890051) 1 NC_008228.1 PFAM: ABC-2 type transporter; KEGG: ecc:c3698 kpsM protein; ABC transporter 3890051 4175017 Patl_3240 Pseudoalteromonas atlantica T6c ABC transporter YP_662800.1 3889455 R 342610 CDS YP_662801.1 109899546 4175018 complement(3890259..3892022) 1 NC_008228.1 PFAM: polysaccharide export protein; KEGG: dvu:DVU3140 capsular polysaccharide transport protein, putative; polysaccharide export protein 3892022 4175018 Patl_3241 Pseudoalteromonas atlantica T6c polysaccharide export protein YP_662801.1 3890259 R 342610 CDS YP_662802.1 109899547 4175019 complement(3892019..3892384) 1 NC_008228.1 hypothetical protein 3892384 4175019 Patl_3242 Pseudoalteromonas atlantica T6c hypothetical protein YP_662802.1 3892019 R 342610 CDS YP_662803.1 109899548 4175020 complement(3892486..3893550) 1 NC_008228.1 TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase, family 4; KEGG: cps:CPS_2091 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 3893550 4175020 Patl_3243 Pseudoalteromonas atlantica T6c undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YP_662803.1 3892486 R 342610 CDS YP_662804.1 109899549 4175021 3894106..3895593 1 NC_008228.1 TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region major facilitator superfamily MFS_1; KEGG: ilo:IL1430 dipeptide/tripeptide permease; amino acid/peptide transporter 3895593 4175021 Patl_3244 Pseudoalteromonas atlantica T6c amino acid/peptide transporter YP_662804.1 3894106 D 342610 CDS YP_662805.1 109899550 4175022 3895730..3896029 1 NC_008228.1 KEGG: ilo:IL1095 hypothetical protein; hypothetical protein 3896029 4175022 Patl_3245 Pseudoalteromonas atlantica T6c hypothetical protein YP_662805.1 3895730 D 342610 CDS YP_662806.1 109899551 4175023 3896034..3897050 1 NC_008228.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: son:SO1664 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 3897050 4175023 Patl_3246 Pseudoalteromonas atlantica T6c UDP-glucose 4-epimerase YP_662806.1 3896034 D 342610 CDS YP_662807.1 109899552 4175024 complement(3897176..3897943) 1 NC_008228.1 PFAM: VacJ-like lipoprotein; KEGG: cps:CPS_1530 VacJ lipoprotein; VacJ-like lipoprotein 3897943 4175024 Patl_3247 Pseudoalteromonas atlantica T6c VacJ-like lipoprotein YP_662807.1 3897176 R 342610 CDS YP_662808.1 109899553 4175025 complement(3897940..3899241) 1 NC_008228.1 PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: pha:PSHAa0830 cytochrome c-type biogenesis protein; hypothetical protein 3899241 4175025 Patl_3248 Pseudoalteromonas atlantica T6c hypothetical protein YP_662808.1 3897940 R 342610 CDS YP_662809.1 109899554 4175026 complement(3899238..3899687) 1 NC_008228.1 PFAM: cytochrome C biogenesis protein; KEGG: pha:PSHAa0829 cytochrome c-type biogenesis protein CcmH; cytochrome C biogenesis protein 3899687 4175026 Patl_3249 Pseudoalteromonas atlantica T6c cytochrome C biogenesis protein YP_662809.1 3899238 R 342610 CDS YP_662810.1 109899555 4175027 complement(3899684..3900256) 1 NC_008228.1 TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin; KEGG: pha:PSHAa0828 thiol:disulfide interchange protein DsbE (cytochrome c biogenesis protein CcmG); periplasmic protein thiol--disulfide oxidoreductase DsbE 3900256 4175027 Patl_3250 Pseudoalteromonas atlantica T6c periplasmic protein thiol--disulfide oxidoreductase DsbE YP_662810.1 3899684 R 342610 CDS YP_662811.1 109899556 4175028 complement(3900253..3902286) 1 NC_008228.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: ilo:IL1101 cytochrome c biogenesis factor; cytochrome c-type biogenesis protein CcmF 3902286 4175028 Patl_3251 Pseudoalteromonas atlantica T6c cytochrome c-type biogenesis protein CcmF YP_662811.1 3900253 R 342610 CDS YP_662812.1 109899557 4175029 complement(3902288..3902782) 1 NC_008228.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 3902782 4175029 Patl_3252 Pseudoalteromonas atlantica T6c cytochrome c-type biogenesis protein CcmE YP_662812.1 3902288 R 342610 CDS YP_662813.1 109899558 4175030 complement(3902779..3903015) 1 NC_008228.1 PFAM: Heme exporter protein D (CcmD); KEGG: msu:MS0604 heme exporter protein D; heme exporter protein CcmD 3903015 4175030 Patl_3253 Pseudoalteromonas atlantica T6c heme exporter protein CcmD YP_662813.1 3902779 R 342610 CDS YP_662814.1 109899559 4175031 complement(3903019..3903765) 1 NC_008228.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: vfi:VF1822 heme chaperone heme-lyase; heme exporter protein CcmC 3903765 4175031 Patl_3254 Pseudoalteromonas atlantica T6c heme exporter protein CcmC YP_662814.1 3903019 R 342610 CDS YP_662815.1 109899560 4175032 complement(3903765..3904433) 1 NC_008228.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: son:SO0262 heme exporter protein CcmB; heme exporter protein CcmB 3904433 4175032 Patl_3255 Pseudoalteromonas atlantica T6c heme exporter protein CcmB YP_662815.1 3903765 R 342610 CDS YP_662816.1 109899561 4175033 complement(3904430..3904966) 1 NC_008228.1 TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; KEGG: pha:PSHAa0822 heme exporter protein A, ABC superfamily (cytochrome c-type biogenesis ATP-binding protein CcmA); heme exporter protein CcmA 3904966 4175033 Patl_3256 Pseudoalteromonas atlantica T6c heme exporter protein CcmA YP_662816.1 3904430 R 342610 CDS YP_662817.1 109899562 4175034 3905693..3908299 1 NC_008228.1 KEGG: sha:SH0326 hypothetical protein; hypothetical protein 3908299 4175034 Patl_3257 Pseudoalteromonas atlantica T6c hypothetical protein YP_662817.1 3905693 D 342610 CDS YP_662818.1 109899563 4175035 3908331..3908663 1 NC_008228.1 KEGG: son:SO3199 FlhB domain protein; FlhB domain-containing protein 3908663 4175035 Patl_3258 Pseudoalteromonas atlantica T6c FlhB domain-containing protein YP_662818.1 3908331 D 342610 CDS YP_662819.1 109899564 4175036 complement(3908741..3909772) 1 NC_008228.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 3909772 recA 4175036 recA Pseudoalteromonas atlantica T6c recombinase A YP_662819.1 3908741 R 342610 CDS YP_662820.1 109899565 4175037 complement(3910110..3910514) 1 NC_008228.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: dde:Dde_3339 hypothetical protein; glutathione-dependent formaldehyde-activating protein 3910514 4175037 Patl_3260 Pseudoalteromonas atlantica T6c glutathione-dependent formaldehyde-activating protein YP_662820.1 3910110 R 342610 CDS YP_662821.1 109899566 4175038 complement(3910563..3910934) 1 NC_008228.1 KEGG: son:SO1590 hypothetical protein; hypothetical protein 3910934 4175038 Patl_3261 Pseudoalteromonas atlantica T6c hypothetical protein YP_662821.1 3910563 R 342610 CDS YP_662822.1 109899567 4175039 complement(3911039..3911551) 1 NC_008228.1 PFAM: CinA-like; KEGG: stt:t2731 competence/damage-inducible protein CinA C-terminal domain; CinA-like protein 3911551 4175039 Patl_3262 Pseudoalteromonas atlantica T6c CinA-like protein YP_662822.1 3911039 R 342610 CDS YP_662823.1 109899568 4175040 3911681..3914350 1 NC_008228.1 TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS-like MutS III MutS II MutS IV; KEGG: stm:STM2909 DNA mismatch repair protein mutS; DNA mismatch repair protein MutS 3914350 4175040 Patl_3263 Pseudoalteromonas atlantica T6c DNA mismatch repair protein MutS YP_662823.1 3911681 D 342610 CDS YP_662824.1 109899569 4175041 complement(3914651..3915013) 1 NC_008228.1 PFAM: response regulator receiver; KEGG: pha:PSHAa0913 chemotaxis protein; response regulator receiver protein 3915013 4175041 Patl_3264 Pseudoalteromonas atlantica T6c response regulator receiver protein YP_662824.1 3914651 R 342610 CDS YP_662825.1 109899570 4175042 3915234..3916865 1 NC_008228.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 3916865 pyrG 4175042 pyrG Pseudoalteromonas atlantica T6c CTP synthetase YP_662825.1 3915234 D 342610 CDS YP_662826.1 109899571 4175043 3916984..3918276 1 NC_008228.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 3918276 eno 4175043 eno Pseudoalteromonas atlantica T6c phosphopyruvate hydratase YP_662826.1 3916984 D 342610 CDS YP_662827.1 109899572 4175044 3918355..3919038 1 NC_008228.1 KEGG: ilo:IL0771 hypothetical protein; hypothetical protein 3919038 4175044 Patl_3267 Pseudoalteromonas atlantica T6c hypothetical protein YP_662827.1 3918355 D 342610 CDS YP_662828.1 109899573 4175045 3919367..3920926 1 NC_008228.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 3920926 4175045 Patl_3268 Pseudoalteromonas atlantica T6c 2-isopropylmalate synthase YP_662828.1 3919367 D 342610 CDS YP_662829.1 109899574 4175046 3920934..3922034 1 NC_008228.1 KEGG: son:SO4235 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 3922034 4175046 Patl_3269 Pseudoalteromonas atlantica T6c 3-isopropylmalate dehydrogenase YP_662829.1 3920934 D 342610 CDS YP_662830.1 109899575 4175047 3922047..3923453 1 NC_008228.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 3923453 4175047 Patl_3270 Pseudoalteromonas atlantica T6c isopropylmalate isomerase large subunit YP_662830.1 3922047 D 342610 CDS YP_662831.1 109899576 4175048 3923469..3924095 1 NC_008228.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 3924095 leuD 4175048 leuD Pseudoalteromonas atlantica T6c isopropylmalate isomerase small subunit YP_662831.1 3923469 D 342610 CDS YP_662832.1 109899577 4175049 3924326..3925384 1 NC_008228.1 PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: ppr:PBPRA0256 putative transcriptional repressor, LacI family; LacI family transcriptional regulator 3925384 4175049 Patl_3272 Pseudoalteromonas atlantica T6c LacI family transcriptional regulator YP_662832.1 3924326 D 342610 CDS YP_662833.1 109899578 4175050 3925448..3925912 1 NC_008228.1 PFAM: CreA; KEGG: vch:VCA0800 putative CreA protein; CreA family protein 3925912 4175050 Patl_3273 Pseudoalteromonas atlantica T6c CreA family protein YP_662833.1 3925448 D 342610 CDS YP_662834.1 109899579 4175051 complement(3926007..3928475) 1 NC_008228.1 PFAM: glycosyltransferase 36 glycosyltransferase 36 associated; KEGG: tma:TM1848 cellobiose-phosphorylase; glycosyltransferase 3928475 4175051 Patl_3274 Pseudoalteromonas atlantica T6c glycosyltransferase YP_662834.1 3926007 R 342610 CDS YP_662835.1 109899580 4175052 complement(3928521..3930062) 1 NC_008228.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: cps:CPS_3707 sugar:cation symporter family protein; sugar (glycoside-Pentoside-hexuronide) transporter 3930062 4175052 Patl_3275 Pseudoalteromonas atlantica T6c sugar (glycoside-Pentoside-hexuronide) transporter YP_662835.1 3928521 R 342610 CDS YP_662836.1 109899581 4175053 complement(3930442..3932004) 1 NC_008228.1 PFAM: tryptophan halogenase; KEGG: cps:CPS_3699 putative tryptophan halogenase; tryptophan halogenase 3932004 4175053 Patl_3276 Pseudoalteromonas atlantica T6c tryptophan halogenase YP_662836.1 3930442 R 342610 CDS YP_662837.1 109899582 4175054 complement(3932161..3933693) 1 NC_008228.1 PFAM: tryptophan halogenase; KEGG: cps:CPS_3700 putative tryptophan halogenase; tryptophan halogenase 3933693 4175054 Patl_3277 Pseudoalteromonas atlantica T6c tryptophan halogenase YP_662837.1 3932161 R 342610 CDS YP_662838.1 109899583 4175055 complement(3933837..3936857) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3698 TonB-dependent receptor; TonB-dependent receptor 3936857 4175055 Patl_3278 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_662838.1 3933837 R 342610 CDS YP_662839.1 109899584 4175056 complement(3937945..3938859) 1 NC_008228.1 KEGG: hch:HCH_01476 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; hypothetical protein 3938859 4175056 Patl_3279 Pseudoalteromonas atlantica T6c hypothetical protein YP_662839.1 3937945 R 342610 CDS YP_662840.1 109899585 4175057 complement(3938993..3940138) 1 NC_008228.1 KEGG: ppr:PBPRA0441 putative general secretion pathway protein B; hypothetical protein 3940138 4175057 Patl_3280 Pseudoalteromonas atlantica T6c hypothetical protein YP_662840.1 3938993 R 342610 CDS YP_662841.1 109899586 4175058 complement(3940131..3941042) 1 NC_008228.1 SMART: ATPase; KEGG: pha:PSHAa2267 ATPase and membrane protein; ATPase 3941042 4175058 Patl_3281 Pseudoalteromonas atlantica T6c ATPase YP_662841.1 3940131 R 342610 CDS YP_662842.1 109899587 4175059 3941306..3942523 1 NC_008228.1 PFAM: Polynucleotide adenylyltransferase region metal-dependent phosphohydrolase, HD subdomain; KEGG: pmu:PM0247 tRNA nucleotidyltransferase (CCA-adding enzyme); metal dependent phosphohydrolase 3942523 4175059 Patl_3282 Pseudoalteromonas atlantica T6c metal dependent phosphohydrolase YP_662842.1 3941306 D 342610 CDS YP_662843.1 109899588 4175060 3942578..3943234 1 NC_008228.1 KEGG: pha:PSHAa0125 hypothetical protein; hypothetical protein 3943234 4175060 Patl_3283 Pseudoalteromonas atlantica T6c hypothetical protein YP_662843.1 3942578 D 342610 CDS YP_662844.1 109899589 4175061 3943322..3944560 1 NC_008228.1 facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 3944560 4175061 Patl_3284 Pseudoalteromonas atlantica T6c ATP-dependent RNA helicase SrmB YP_662844.1 3943322 D 342610 CDS YP_662845.1 109899590 4175062 complement(3944751..3945215) 1 NC_008228.1 hypothetical protein 3945215 4175062 Patl_3285 Pseudoalteromonas atlantica T6c hypothetical protein YP_662845.1 3944751 R 342610 CDS YP_662846.1 109899591 4175063 complement(3945297..3946403) 1 NC_008228.1 TIGRFAM: TonB family protein; KEGG: cps:CPS_4804 TonB domain protein; TonB family protein 3946403 4175063 Patl_3286 Pseudoalteromonas atlantica T6c TonB family protein YP_662846.1 3945297 R 342610 CDS YP_662847.1 109899592 4175064 3946633..3947259 1 NC_008228.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 3947259 4175064 Patl_3287 Pseudoalteromonas atlantica T6c putative deoxyribonucleotide triphosphate pyrophosphatase YP_662847.1 3946633 D 342610 CDS YP_662848.1 109899593 4175065 3947264..3948454 1 NC_008228.1 KEGG: eca:ECA3632 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM HemN-like; SMART: Elongator protein 3/MiaB/NifB; putative oxygen-independent coproporphyrinogen III oxidase 3948454 4175065 Patl_3288 Pseudoalteromonas atlantica T6c putative oxygen-independent coproporphyrinogen III oxidase YP_662848.1 3947264 D 342610 CDS YP_662849.1 109899594 4175066 complement(3948513..3949169) 1 NC_008228.1 PFAM: DNA methylase N-4/N-6; KEGG: vpa:VP0394 hemagglutinin associated protein; DNA methylase N-4/N-6 3949169 4175066 Patl_3289 Pseudoalteromonas atlantica T6c DNA methylase N-4/N-6 YP_662849.1 3948513 R 342610 CDS YP_662850.1 109899595 4175067 complement(3949237..3950016) 1 NC_008228.1 KEGG: pha:PSHAa0465 hypothetical protein; hypothetical protein 3950016 4175067 Patl_3290 Pseudoalteromonas atlantica T6c hypothetical protein YP_662850.1 3949237 R 342610 CDS YP_662851.1 109899596 4175068 complement(3950107..3950604) 1 NC_008228.1 PFAM: protein of unknown function DUF1566; KEGG: pha:PSHAa2268 Fimh-like protein; hypothetical protein 3950604 4175068 Patl_3291 Pseudoalteromonas atlantica T6c hypothetical protein YP_662851.1 3950107 R 342610 CDS YP_662852.1 109899597 4175069 complement(3950606..3952321) 1 NC_008228.1 PFAM: protein of unknown function DUF1566; KEGG: pha:PSHAa2269 hypothetical protein; hypothetical protein 3952321 4175069 Patl_3292 Pseudoalteromonas atlantica T6c hypothetical protein YP_662852.1 3950606 R 342610 CDS YP_662853.1 109899598 4175070 complement(3952408..3953121) 1 NC_008228.1 PFAM: LrgB-like protein; KEGG: gme:Gmet_1204 LrgB-like protein; LrgB-like protein 3953121 4175070 Patl_3293 Pseudoalteromonas atlantica T6c LrgB-like protein YP_662853.1 3952408 R 342610 CDS YP_662854.1 109899599 4175071 complement(3953164..3953541) 1 NC_008228.1 PFAM: LrgA; KEGG: dar:Daro_3105 LrgA; LrgA protein 3953541 4175071 Patl_3294 Pseudoalteromonas atlantica T6c LrgA protein YP_662854.1 3953164 R 342610 CDS YP_662855.1 109899600 4175072 complement(3953606..3954964) 1 NC_008228.1 PFAM: response regulator receiver sigma-54 factor, interaction region helix-turn-helix, Fis-type; SMART: ATPase; KEGG: cps:CPS_5030 sigma-54 dependent DNA-binding response regulator, Fis family; two component sigma-54 specific Fis family transcriptional regulator 3954964 4175072 Patl_3295 Pseudoalteromonas atlantica T6c two component sigma-54 specific Fis family transcriptional regulator YP_662855.1 3953606 R 342610 CDS YP_662856.1 109899601 4175073 complement(3954990..3957008) 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like; KEGG: cps:CPS_5031 sensor histidine kinase; sensor signal transduction histidine kinase 3957008 4175073 Patl_3296 Pseudoalteromonas atlantica T6c sensor signal transduction histidine kinase YP_662856.1 3954990 R 342610 CDS YP_662857.1 109899602 4175074 complement(3957069..3958193) 1 NC_008228.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 3958193 4175074 Patl_3297 Pseudoalteromonas atlantica T6c 3-oxoacyl-ACP synthase YP_662857.1 3957069 R 342610 CDS YP_662858.1 109899603 4175075 complement(3958617..3959990) 1 NC_008228.1 catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter 3959990 glpT 4175075 glpT Pseudoalteromonas atlantica T6c sn-glycerol-3-phosphate transporter YP_662858.1 3958617 R 342610 CDS YP_662859.1 109899604 4175076 complement(3960138..3961439) 1 NC_008228.1 PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B2836 major facilitator superfamily (MFS_1) transporter; major facilitator superfamily transporter 3961439 4175076 Patl_3299 Pseudoalteromonas atlantica T6c major facilitator superfamily transporter YP_662859.1 3960138 R 342610 CDS YP_662860.1 109899605 4175077 3961693..3964089 1 NC_008228.1 PFAM: fatty acid cistrans isomerase; KEGG: vpa:VPA0677 fatty acid cis/trans isomerase; fatty acid cistrans isomerase 3964089 4175077 Patl_3300 Pseudoalteromonas atlantica T6c fatty acid cistrans isomerase YP_662860.1 3961693 D 342610 CDS YP_662861.1 109899606 4175078 complement(3964180..3964989) 1 NC_008228.1 hypothetical protein 3964989 4175078 Patl_3301 Pseudoalteromonas atlantica T6c hypothetical protein YP_662861.1 3964180 R 342610 CDS YP_662862.1 109899607 4175079 complement(3965225..3965473) 1 NC_008228.1 hypothetical protein 3965473 4175079 Patl_3302 Pseudoalteromonas atlantica T6c hypothetical protein YP_662862.1 3965225 R 342610 CDS YP_662863.1 109899608 4175080 complement(3965555..3966451) 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: vch:VCA1055 transcriptional regulator, LysR family; LysR family transcriptional regulator 3966451 4175080 Patl_3303 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_662863.1 3965555 R 342610 CDS YP_662864.1 109899609 4175081 3966567..3967199 1 NC_008228.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: vch:VCA1054 hypothetical protein; NAD-dependent epimerase/dehydratase 3967199 4175081 Patl_3304 Pseudoalteromonas atlantica T6c NAD-dependent epimerase/dehydratase YP_662864.1 3966567 D 342610 CDS YP_662865.1 109899610 4175082 complement(3967304..3967834) 1 NC_008228.1 KEGG: ccr:CC1285 hypothetical protein; hypothetical protein 3967834 4175082 Patl_3305 Pseudoalteromonas atlantica T6c hypothetical protein YP_662865.1 3967304 R 342610 CDS YP_662866.1 109899611 4175083 complement(3968167..3968640) 1 NC_008228.1 PFAM: MgtC/SapB transporter; KEGG: pha:PSHAa1383 transporter; MgtC/SapB transporter 3968640 4175083 Patl_3306 Pseudoalteromonas atlantica T6c MgtC/SapB transporter YP_662866.1 3968167 R 342610 CDS YP_662867.1 109899612 4175084 complement(3969095..3970444) 1 NC_008228.1 KEGG: pfl:PFL_5409 hypothetical protein; dienelactone hydrolase-like protein 3970444 4175084 Patl_3307 Pseudoalteromonas atlantica T6c dienelactone hydrolase-like protein YP_662867.1 3969095 R 342610 CDS YP_662868.1 109899613 4175085 complement(3970549..3970992) 1 NC_008228.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily; KEGG: bte:BTH_I2491 uncharacterized domain 1, putative; hypothetical protein 3970992 4175085 Patl_3308 Pseudoalteromonas atlantica T6c hypothetical protein YP_662868.1 3970549 R 342610 CDS YP_662869.1 109899614 4175086 complement(3971333..3972256) 1 NC_008228.1 KEGG: cps:CPS_3850 hypothetical protein; hypothetical protein 3972256 4175086 Patl_3309 Pseudoalteromonas atlantica T6c hypothetical protein YP_662869.1 3971333 R 342610 CDS YP_662870.1 109899615 4175087 complement(3972267..3972917) 1 NC_008228.1 KEGG: cps:CPS_3851 hypothetical protein; hypothetical protein 3972917 4175087 Patl_3310 Pseudoalteromonas atlantica T6c hypothetical protein YP_662870.1 3972267 R 342610 CDS YP_662871.1 109899616 4175088 complement(3972904..3973452) 1 NC_008228.1 PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: cps:CPS_3852 RNA polymerase sigma factor, sigma-70 family; ECF subfamily RNA polymerase sigma-24 factor 3973452 4175088 Patl_3311 Pseudoalteromonas atlantica T6c ECF subfamily RNA polymerase sigma-24 factor YP_662871.1 3972904 R 342610 CDS YP_662872.1 109899617 4175089 complement(3973527..3974438) 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ilo:IL2577 transcriptional regulator of LysR family; LysR family transcriptional regulator 3974438 4175089 Patl_3312 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_662872.1 3973527 R 342610 CDS YP_662873.1 109899618 4175090 complement(3974674..3976062) 1 NC_008228.1 PFAM: phosphate-selective porin O and P; KEGG: eli:ELI_11870 hypothetical protein; phosphate-selective porin O and P 3976062 4175090 Patl_3313 Pseudoalteromonas atlantica T6c phosphate-selective porin O and P YP_662873.1 3974674 R 342610 CDS YP_662874.1 109899619 4175091 complement(3976456..3977157) 1 NC_008228.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU; KEGG: pae:PA5365 phosphate transport system regulatory protein; phosphate uptake regulator PhoU 3977157 4175091 Patl_3314 Pseudoalteromonas atlantica T6c phosphate uptake regulator PhoU YP_662874.1 3976456 R 342610 CDS YP_662875.1 109899620 4175092 complement(3977173..3978045) 1 NC_008228.1 KEGG: mca:MCA1074 phosphate ABC transporter, ATP-binding protein; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: ATPase; phosphate ABC transporter ATPase 3978045 4175092 Patl_3315 Pseudoalteromonas atlantica T6c phosphate ABC transporter ATPase YP_662875.1 3977173 R 342610 CDS YP_662876.1 109899621 4175093 complement(3978058..3979383) 1 NC_008228.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA1073 phosphate ABC transporter, permease protein; phosphate ABC transporter permease 3979383 4175093 Patl_3316 Pseudoalteromonas atlantica T6c phosphate ABC transporter permease YP_662876.1 3978058 R 342610 CDS YP_662877.1 109899622 4175094 complement(3979386..3980780) 1 NC_008228.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA1072 phosphate ABC transporter, permease protein; phosphate ABC transporter permease 3980780 4175094 Patl_3317 Pseudoalteromonas atlantica T6c phosphate ABC transporter permease YP_662877.1 3979386 R 342610 CDS YP_662878.1 109899623 4175095 complement(3980797..3981882) 1 NC_008228.1 KEGG: mca:MCA0949 phosphate binding protein, putative; phosphate binding protein 3981882 4175095 Patl_3318 Pseudoalteromonas atlantica T6c phosphate binding protein YP_662878.1 3980797 R 342610 CDS YP_662879.1 109899624 4175096 complement(3982096..3983364) 1 NC_008228.1 PFAM: phosphate transporter; KEGG: ilo:IL2207 phosphate permease; phosphate transporter 3983364 4175096 Patl_3319 Pseudoalteromonas atlantica T6c phosphate transporter YP_662879.1 3982096 R 342610 CDS YP_662880.1 109899625 4175097 complement(3983377..3984054) 1 NC_008228.1 PFAM: protein of unknown function DUF47; KEGG: pha:PSHAa0313 hypothetical protein; hypothetical protein 3984054 4175097 Patl_3320 Pseudoalteromonas atlantica T6c hypothetical protein YP_662880.1 3983377 R 342610 CDS YP_662881.1 109899626 4175098 3984364..3984876 1 NC_008228.1 PFAM: amino acid-binding ACT; KEGG: ppr:PBPRA0727 hypothetical protein; amino acid-binding protein 3984876 4175098 Patl_3321 Pseudoalteromonas atlantica T6c amino acid-binding protein YP_662881.1 3984364 D 342610 CDS YP_662882.1 109899627 4175099 3985021..3987105 1 NC_008228.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 3987105 4175099 Patl_3322 Pseudoalteromonas atlantica T6c polyphosphate kinase YP_662882.1 3985021 D 342610 CDS YP_662883.1 109899628 4175100 3987095..3988624 1 NC_008228.1 PFAM: Ppx/GppA phosphatase; KEGG: vvy:VV0726 exopolyphosphatase; Ppx/GppA phosphatase 3988624 4175100 Patl_3323 Pseudoalteromonas atlantica T6c Ppx/GppA phosphatase YP_662883.1 3987095 D 342610 CDS YP_662884.1 109899629 4175101 3988791..3989051 1 NC_008228.1 KEGG: pha:PSHAb0247 hypothetical protein; hypothetical protein 3989051 4175101 Patl_3324 Pseudoalteromonas atlantica T6c hypothetical protein YP_662884.1 3988791 D 342610 CDS YP_662885.1 109899630 4175102 3989114..3989707 1 NC_008228.1 KEGG: ftu:FTT0911 hypothetical protein; hypothetical protein 3989707 4175102 Patl_3325 Pseudoalteromonas atlantica T6c hypothetical protein YP_662885.1 3989114 D 342610 CDS YP_662886.1 109899631 4175103 complement(3989704..3990042) 1 NC_008228.1 KEGG: pha:PSHAb0085 putative orphan protein; hypothetical protein 3990042 4175103 Patl_3326 Pseudoalteromonas atlantica T6c hypothetical protein YP_662886.1 3989704 R 342610 CDS YP_662887.1 109899632 4175104 complement(3990250..3991149) 1 NC_008228.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis; fructose-1,6-bisphosphate aldolase 3991149 4175104 Patl_3327 Pseudoalteromonas atlantica T6c fructose-1,6-bisphosphate aldolase YP_662887.1 3990250 R 342610 CDS YP_662888.1 109899633 4175105 complement(3991307..3992482) 1 NC_008228.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 3992482 pgk 4175105 pgk Pseudoalteromonas atlantica T6c phosphoglycerate kinase YP_662888.1 3991307 R 342610 CDS YP_662889.1 109899634 4175106 complement(3992605..3993633) 1 NC_008228.1 KEGG: pha:PSHAa0594 D-erythrose 4-phosphate dehydrogenase; TIGRFAM: D-erythrose-4-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase dihydrodipicolinate reductase; D-erythrose-4-phosphate dehydrogenase 3993633 4175106 Patl_3329 Pseudoalteromonas atlantica T6c D-erythrose-4-phosphate dehydrogenase YP_662889.1 3992605 R 342610 CDS YP_662890.1 109899635 4175107 complement(3993777..3995777) 1 NC_008228.1 TIGRFAM: transketolase; PFAM: Transketolase-like Transketolase, central region; KEGG: son:SO0930 transketolase; transketolase 3995777 4175107 Patl_3330 Pseudoalteromonas atlantica T6c transketolase YP_662890.1 3993777 R 342610 CDS YP_662891.1 109899636 4175108 3996057..3997208 1 NC_008228.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3997208 4175108 Patl_3331 Pseudoalteromonas atlantica T6c S-adenosylmethionine synthetase YP_662891.1 3996057 D 342610 CDS YP_662892.1 109899637 4175109 3997397..3998203 1 NC_008228.1 PFAM: peptidase M48, Ste24p; KEGG: vvy:VVA0755 Zn-dependent protease with chaperone function; peptidase M48, Ste24p 3998203 4175109 Patl_3332 Pseudoalteromonas atlantica T6c peptidase M48, Ste24p YP_662892.1 3997397 D 342610 CDS YP_662893.1 109899638 4175110 complement(3998276..3999103) 1 NC_008228.1 PFAM: MscS Mechanosensitive ion channel; KEGG: tcx:Tcr_1584 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 3999103 4175110 Patl_3333 Pseudoalteromonas atlantica T6c mechanosensitive ion channel protein MscS YP_662893.1 3998276 R 342610 CDS YP_662894.1 109899639 4175111 3999764..4000492 1 NC_008228.1 PFAM: protein of unknown function DUF558; KEGG: pha:PSHAa2598 RNA methyltransferase with a deep trefoil knot, RrmA and YibK are structural paralogs; hypothetical protein 4000492 4175111 Patl_3334 Pseudoalteromonas atlantica T6c hypothetical protein YP_662894.1 3999764 D 342610 CDS YP_662895.1 109899640 4175112 4000685..4002079 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: dvu:DVU0721 sensory box histidine kinase; histidine kinase 4002079 4175112 Patl_3335 Pseudoalteromonas atlantica T6c histidine kinase YP_662895.1 4000685 D 342610 CDS YP_662896.1 109899641 4175113 complement(4002171..4003259) 1 NC_008228.1 KEGG: eli:ELI_11930 glutathione S-transferase; glutathione S-transferase 4003259 4175113 Patl_3336 Pseudoalteromonas atlantica T6c glutathione S-transferase YP_662896.1 4002171 R 342610 CDS YP_662897.1 109899642 4175114 complement(4003416..4004453) 1 NC_008228.1 PFAM: phospholipase/Carboxylesterase; KEGG: hch:HCH_03321 putative esterase/lipase; phospholipase/carboxylesterase 4004453 4175114 Patl_3337 Pseudoalteromonas atlantica T6c phospholipase/carboxylesterase YP_662897.1 4003416 R 342610 CDS YP_662898.1 109899643 4175115 complement(4004589..4005332) 1 NC_008228.1 TIGRFAM: Glutaredoxin-family domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen glutaredoxin Redoxin; KEGG: pha:PSHAa0759 peroxiredoxin/glutaredoxin protein; glutaredoxin family protein 4005332 4175115 Patl_3338 Pseudoalteromonas atlantica T6c glutaredoxin family protein YP_662898.1 4004589 R 342610 CDS YP_662899.1 109899644 4175116 complement(4005482..4005712) 1 NC_008228.1 PFAM: protein of unknown function DUF329; KEGG: pha:PSHAa0377 hypothetical protein; hypothetical protein 4005712 4175116 Patl_3339 Pseudoalteromonas atlantica T6c hypothetical protein YP_662899.1 4005482 R 342610 CDS YP_662900.1 109899645 4175117 complement(4005749..4006582) 1 NC_008228.1 PFAM: protein of unknown function DUF1342; KEGG: ppr:PBPRA3205 conserved hypothetical protein; hypothetical protein 4006582 4175117 Patl_3340 Pseudoalteromonas atlantica T6c hypothetical protein YP_662900.1 4005749 R 342610 CDS YP_662901.1 109899646 4175118 complement(4006632..4007246) 1 NC_008228.1 KEGG: yps:YPTB0702 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase 4007246 4175118 Patl_3341 Pseudoalteromonas atlantica T6c dephospho-CoA kinase YP_662901.1 4006632 R 342610 CDS YP_662902.1 109899647 4175119 complement(4007281..4008183) 1 NC_008228.1 PFAM: peptidase A24A, prepilin type IV peptidase A24A-like; KEGG: pha:PSHAa0380 leader peptide processing enzyme; prepilin peptidase 4008183 4175119 Patl_3342 Pseudoalteromonas atlantica T6c prepilin peptidase YP_662902.1 4007281 R 342610 CDS YP_662903.1 109899648 4175120 complement(4008290..4009495) 1 NC_008228.1 PFAM: type II secretion system protein; KEGG: cps:CPS_4448 type IV pilus biogenesis protein PilC; type II secretion system protein 4009495 4175120 Patl_3343 Pseudoalteromonas atlantica T6c type II secretion system protein YP_662903.1 4008290 R 342610 CDS YP_662904.1 109899649 4175121 complement(4009560..4010006) 1 NC_008228.1 PFAM: methylation; KEGG: cps:CPS_4444 type IV pilin; prepilin-type cleavage/methylation protein 4010006 4175121 Patl_3344 Pseudoalteromonas atlantica T6c prepilin-type cleavage/methylation protein YP_662904.1 4009560 R 342610 CDS YP_662905.1 109899650 4175122 complement(4010211..4011053) 1 NC_008228.1 KEGG: ilo:IL0454 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 4011053 4175122 Patl_3345 Pseudoalteromonas atlantica T6c nicotinate-nucleotide pyrophosphorylase YP_662905.1 4010211 R 342610 CDS YP_662906.1 109899651 4175123 complement(4011101..4011577) 1 NC_008228.1 TIGRFAM: conserved hypothetical protein; KEGG: pfl:PFL_0547 Retroviral aspartyl protease domain protein; hypothetical protein 4011577 4175123 Patl_3346 Pseudoalteromonas atlantica T6c hypothetical protein YP_662906.1 4011101 R 342610 CDS YP_662907.1 109899652 4175124 4011705..4012289 1 NC_008228.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: hit:NTHI0411 AmpD; N-acetyl-anhydromuranmyl-L-alanine amidase 4012289 4175124 Patl_3347 Pseudoalteromonas atlantica T6c N-acetyl-anhydromuranmyl-L-alanine amidase YP_662907.1 4011705 D 342610 CDS YP_662908.1 109899653 4175125 4012349..4013161 1 NC_008228.1 involved in regulation of beta-lactamase; putative signaling protein; regulatory protein AmpE 4013161 4175125 Patl_3348 Pseudoalteromonas atlantica T6c regulatory protein AmpE YP_662908.1 4012349 D 342610 CDS YP_662909.1 109899654 4175126 4013379..4014134 1 NC_008228.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: son:SO0423 pyruvate dehydrogenase complex repressor; regulatory protein GntR 4014134 4175126 Patl_3349 Pseudoalteromonas atlantica T6c regulatory protein GntR YP_662909.1 4013379 D 342610 CDS YP_662910.1 109899655 4175127 4014241..4016913 1 NC_008228.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 4016913 aceE 4175127 aceE Pseudoalteromonas atlantica T6c pyruvate dehydrogenase subunit E1 YP_662910.1 4014241 D 342610 CDS YP_662911.1 109899656 4175128 4016934..4018928 1 NC_008228.1 KEGG: son:SO0425 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase); TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment catalytic domain of components of various dehydrogenase complexes E3 binding; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 4018928 4175128 Patl_3351 Pseudoalteromonas atlantica T6c pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase YP_662911.1 4016934 D 342610 CDS YP_662912.1 109899657 4175129 4019041..4020465 1 NC_008228.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 4020465 4175129 Patl_3352 Pseudoalteromonas atlantica T6c dihydrolipoamide dehydrogenase YP_662912.1 4019041 D 342610 CDS YP_662913.1 109899658 4175130 4020808..4022889 1 NC_008228.1 PFAM: peptidase M13, neprilysin peptidase M13; KEGG: ilo:IL0461 secreted zinc metalloproteinase; endothelin-converting protein 1 4022889 4175130 Patl_3353 Pseudoalteromonas atlantica T6c endothelin-converting protein 1 YP_662913.1 4020808 D 342610 CDS YP_662914.1 109899659 4175131 4022973..4023293 1 NC_008228.1 PFAM: protein of unknown function DUF1289; KEGG: plu:plu2601 hypothetical protein; hypothetical protein 4023293 4175131 Patl_3354 Pseudoalteromonas atlantica T6c hypothetical protein YP_662914.1 4022973 D 342610 CDS YP_662915.1 109899660 4175132 complement(4023290..4024231) 1 NC_008228.1 PFAM: alpha/beta hydrolase fold; KEGG: cac:CAP0097 carboxyl esterase, a/b hydrolase; alpha/beta hydrolase fold protein 4024231 4175132 Patl_3355 Pseudoalteromonas atlantica T6c alpha/beta hydrolase fold protein YP_662915.1 4023290 R 342610 CDS YP_662916.1 109899661 4175133 4024357..4025187 1 NC_008228.1 KEGG: cps:CPS_4407 hypothetical protein; putative signal transduction protein 4025187 4175133 Patl_3356 Pseudoalteromonas atlantica T6c putative signal transduction protein YP_662916.1 4024357 D 342610 CDS YP_662917.1 109899662 4175134 4025291..4026097 1 NC_008228.1 KEGG: ilo:IL2210 putative salt-induced outer membrane protein; putative salt-induced outer membrane protein 4026097 4175134 Patl_3357 Pseudoalteromonas atlantica T6c putative salt-induced outer membrane protein YP_662917.1 4025291 D 342610 CDS YP_662918.1 109899663 4175135 4026147..4026884 1 NC_008228.1 PFAM: protein of unknown function DUF481; KEGG: pha:PSHAa0397 hypothetical protein; hypothetical protein 4026884 4175135 Patl_3358 Pseudoalteromonas atlantica T6c hypothetical protein YP_662918.1 4026147 D 342610 CDS YP_662919.1 109899664 4175136 complement(4026947..4028179) 1 NC_008228.1 KEGG: cps:CPS_0914 hypothetical protein; hypothetical protein 4028179 4175136 Patl_3359 Pseudoalteromonas atlantica T6c hypothetical protein YP_662919.1 4026947 R 342610 CDS YP_662920.1 109899665 4175137 complement(4028176..4030533) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: cps:CPS_0913 sensory box sensor/GGDEF/EAL domain protein; diguanylate cyclase/phosphodiesterase 4030533 4175137 Patl_3360 Pseudoalteromonas atlantica T6c diguanylate cyclase/phosphodiesterase YP_662920.1 4028176 R 342610 CDS YP_662921.1 109899666 4175138 complement(4030526..4031134) 1 NC_008228.1 KEGG: psp:PSPPH_3940 hypothetical protein; hypothetical protein 4031134 4175138 Patl_3361 Pseudoalteromonas atlantica T6c hypothetical protein YP_662921.1 4030526 R 342610 CDS YP_662922.1 109899667 4175139 complement(4031294..4035037) 1 NC_008228.1 KEGG: pha:PSHAa2076 hypothetical protein ; membrane protein; ATPase 4035037 4175139 Patl_3362 Pseudoalteromonas atlantica T6c ATPase YP_662922.1 4031294 R 342610 CDS YP_662923.1 109899668 4175140 complement(4035445..4036461) 1 NC_008228.1 KEGG: ilo:IL1019 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding Semialdehyde dehydrogenase, dimerisation region; aspartate-semialdehyde dehydrogenase 4036461 4175140 Patl_3363 Pseudoalteromonas atlantica T6c aspartate-semialdehyde dehydrogenase YP_662923.1 4035445 R 342610 CDS YP_662924.1 109899669 4175141 complement(4036502..4037626) 1 NC_008228.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: cps:CPS_3806 erythronate-4-phosphate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 4037626 4175141 Patl_3364 Pseudoalteromonas atlantica T6c D-isomer specific 2-hydroxyacid dehydrogenase YP_662924.1 4036502 R 342610 CDS YP_662925.1 109899670 4175142 complement(4037857..4038750) 1 NC_008228.1 PFAM: alpha/beta hydrolase fold; KEGG: pae:PA3429 probable epoxide hydrolase; alpha/beta hydrolase fold protein 4038750 4175142 Patl_3365 Pseudoalteromonas atlantica T6c alpha/beta hydrolase fold protein YP_662925.1 4037857 R 342610 CDS YP_662926.1 109899671 4175143 complement(4038750..4039502) 1 NC_008228.1 PFAM: class II aldolase/adducin-like; KEGG: pae:PA3430 probable aldolase; class II aldolase/adducin-like protein 4039502 4175143 Patl_3366 Pseudoalteromonas atlantica T6c class II aldolase/adducin-like protein YP_662926.1 4038750 R 342610 CDS YP_662927.1 109899672 4175144 4039599..4040291 1 NC_008228.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: pfo:Pfl_0199 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator 4040291 4175144 Patl_3367 Pseudoalteromonas atlantica T6c Crp/FNR family transcriptional regulator YP_662927.1 4039599 D 342610 CDS YP_662928.1 109899673 4175145 4040427..4042580 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: son:SO4077 TonB-dependent receptor, putative; TonB-dependent receptor 4042580 4175145 Patl_3368 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_662928.1 4040427 D 342610 CDS YP_662929.1 109899674 4175146 4042616..4043689 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like; KEGG: ilo:IL0167 signal transduction histidine kinase; sensor signal transduction histidine kinase 4043689 4175146 Patl_3369 Pseudoalteromonas atlantica T6c sensor signal transduction histidine kinase YP_662929.1 4042616 D 342610 CDS YP_662930.1 109899675 4175147 4043682..4044209 1 NC_008228.1 PFAM: response regulator receiver helix-turn-helix, Fis-type; KEGG: ilo:IL0166 response regulator with a fis-type DNA-binding domain (CheY, fis domains); response regulator receiver protein 4044209 4175147 Patl_3370 Pseudoalteromonas atlantica T6c response regulator receiver protein YP_662930.1 4043682 D 342610 CDS YP_662931.1 109899676 4175148 4044583..4045599 1 NC_008228.1 hypothetical protein 4045599 4175148 Patl_3371 Pseudoalteromonas atlantica T6c hypothetical protein YP_662931.1 4044583 D 342610 CDS YP_662932.1 109899677 4175149 4045599..4046228 1 NC_008228.1 hypothetical protein 4046228 4175149 Patl_3372 Pseudoalteromonas atlantica T6c hypothetical protein YP_662932.1 4045599 D 342610 CDS YP_662933.1 109899678 4175150 4046237..4048237 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: noc:Noc_0226 PAS sensor diguanylate cyclase and phophodiesterase; diguanylate cyclase/phosphodiesterase 4048237 4175150 Patl_3373 Pseudoalteromonas atlantica T6c diguanylate cyclase/phosphodiesterase YP_662933.1 4046237 D 342610 CDS YP_662934.1 109899679 4175151 4048628..4049557 1 NC_008228.1 KEGG: rru:Rru_A1207 exopolyphosphatase-related protein; exopolyphosphatase-like protein 4049557 4175151 Patl_3374 Pseudoalteromonas atlantica T6c exopolyphosphatase-like protein YP_662934.1 4048628 D 342610 CDS YP_662935.1 109899680 4175152 complement(4049602..4050135) 1 NC_008228.1 hypothetical protein 4050135 4175152 Patl_3375 Pseudoalteromonas atlantica T6c hypothetical protein YP_662935.1 4049602 R 342610 CDS YP_662936.1 109899681 4175153 complement(4050312..4051121) 1 NC_008228.1 PFAM: peptidase M23B; KEGG: hch:HCH_05221 membrane protein related to metalloendopeptidase; peptidase M23B 4051121 4175153 Patl_3376 Pseudoalteromonas atlantica T6c peptidase M23B YP_662936.1 4050312 R 342610 CDS YP_662937.1 109899682 4175154 complement(4051114..4051989) 1 NC_008228.1 KEGG: son:SO2179 hypothetical protein; hypothetical protein 4051989 4175154 Patl_3377 Pseudoalteromonas atlantica T6c hypothetical protein YP_662937.1 4051114 R 342610 CDS YP_662938.1 109899683 4175155 complement(4052138..4053187) 1 NC_008228.1 PFAM: 37 kDa nucleoid-associated protein; KEGG: pha:PSHAa1817 nucleoid-associated protein NdpA; 37 kDa nucleoid-associated protein 4053187 4175155 Patl_3378 Pseudoalteromonas atlantica T6c 37 kDa nucleoid-associated protein YP_662938.1 4052138 R 342610 CDS YP_662939.1 109899684 4175156 4053374..4053592 1 NC_008228.1 PFAM: protein of unknown function DUF1414; KEGG: pmu:PM1884 hypothetical HI0840; hypothetical protein 4053592 4175156 Patl_3379 Pseudoalteromonas atlantica T6c hypothetical protein YP_662939.1 4053374 D 342610 CDS YP_662940.1 109899685 4175157 4053601..4055130 1 NC_008228.1 KEGG: ilo:IL0678 membrane-associated hydrolase of alkaline phosphatase superfamily; alkaline phosphatase superfamily hydrolase 4055130 4175157 Patl_3380 Pseudoalteromonas atlantica T6c alkaline phosphatase superfamily hydrolase YP_662940.1 4053601 D 342610 CDS YP_662941.1 109899686 4175158 complement(4055183..4056031) 1 NC_008228.1 KEGG: vpa:VP2160 rRNA (guanine-N1-)-methyltransferase; rRNA (guanine-N(1)-)-methyltransferase 4056031 4175158 Patl_3381 Pseudoalteromonas atlantica T6c rRNA (guanine-N(1)-)-methyltransferase YP_662941.1 4055183 R 342610 CDS YP_662942.1 109899687 4175159 complement(4056106..4057302) 1 NC_008228.1 PFAM: major facilitator superfamily MFS_1; KEGG: bsu:BG13075 glucose/mannose:H+ symporter; major facilitator superfamily transporter 4057302 4175159 Patl_3382 Pseudoalteromonas atlantica T6c major facilitator superfamily transporter YP_662942.1 4056106 R 342610 CDS YP_662943.1 109899688 4175160 complement(4057660..4058874) 1 NC_008228.1 PFAM: beta-ketoacyl synthase; KEGG: pha:PSHAa2080 3-oxoacyl-[acyl-carrier-protein] synthase I; beta-ketoacyl synthase 4058874 4175160 Patl_3383 Pseudoalteromonas atlantica T6c beta-ketoacyl synthase YP_662943.1 4057660 R 342610 CDS YP_662944.1 109899689 4175161 4059136..4061253 1 NC_008228.1 PFAM: FAD dependent oxidoreductase protein of unknown function DUF752; KEGG: plu:plu3185 hypothetical protein; hypothetical protein 4061253 4175161 Patl_3384 Pseudoalteromonas atlantica T6c hypothetical protein YP_662944.1 4059136 D 342610 CDS YP_662945.1 109899690 4175162 complement(4061275..4061586) 1 NC_008228.1 KEGG: sdy:SDY_2524 hypothetical protein; hypothetical protein 4061586 4175162 Patl_3385 Pseudoalteromonas atlantica T6c hypothetical protein YP_662945.1 4061275 R 342610 CDS YP_662946.1 109899691 4175163 complement(4061620..4062756) 1 NC_008228.1 PFAM: ATP-NAD/AcoX kinase; KEGG: pha:PSHAa0987 hypothetical protein; ATP-NAD/AcoX kinase 4062756 4175163 Patl_3386 Pseudoalteromonas atlantica T6c ATP-NAD/AcoX kinase YP_662946.1 4061620 R 342610 CDS YP_662947.1 109899692 4175164 complement(4062756..4063388) 1 NC_008228.1 PFAM: protein of unknown function DUF462; KEGG: cps:CPS_3812 hypothetical protein; hypothetical protein 4063388 4175164 Patl_3387 Pseudoalteromonas atlantica T6c hypothetical protein YP_662947.1 4062756 R 342610 CDS YP_662948.1 109899693 4175165 4063537..4064274 1 NC_008228.1 KEGG: cps:CPS_3694 hypothetical protein; hypothetical protein 4064274 4175165 Patl_3388 Pseudoalteromonas atlantica T6c hypothetical protein YP_662948.1 4063537 D 342610 CDS YP_662949.1 109899694 4175166 4064344..4065171 1 NC_008228.1 KEGG: hch:HCH_01084 hypothetical protein; hypothetical protein 4065171 4175166 Patl_3389 Pseudoalteromonas atlantica T6c hypothetical protein YP_662949.1 4064344 D 342610 CDS YP_662950.1 109899695 4175167 4065178..4065642 1 NC_008228.1 PFAM: thioesterase superfamily; KEGG: pae:PA3130 hypothetical protein; thioesterase superfamily protein 4065642 4175167 Patl_3390 Pseudoalteromonas atlantica T6c thioesterase superfamily protein YP_662950.1 4065178 D 342610 CDS YP_662951.1 109899696 4175168 4065656..4066933 1 NC_008228.1 PFAM: peptidase A2A, retrovirus, catalytic; KEGG: bja:bll8127 hypothetical protein; putative peptidase A2A 4066933 4175168 Patl_3391 Pseudoalteromonas atlantica T6c putative peptidase A2A YP_662951.1 4065656 D 342610 CDS YP_662952.1 109899697 4175169 complement(4067039..4067896) 1 NC_008228.1 PFAM: protein of unknown function RIO1; KEGG: cps:CPS_4795 RIO1/ZK632.3/MJ0444 family protein; hypothetical protein 4067896 4175169 Patl_3392 Pseudoalteromonas atlantica T6c hypothetical protein YP_662952.1 4067039 R 342610 CDS YP_662953.1 109899698 4175170 4068348..4069184 1 NC_008228.1 hypothetical protein 4069184 4175170 Patl_3393 Pseudoalteromonas atlantica T6c hypothetical protein YP_662953.1 4068348 D 342610 CDS YP_662954.1 109899699 4175171 4069317..4070213 1 NC_008228.1 KEGG: sma:SAV6339 putative 2,3,4, 5-tetrahydropyridine-2-carboxylate N-succinyltransferase; putative 2,3,4, 5-tetrahydropyridine-2-carboxylate N-succinyltransferase 4070213 4175171 Patl_3394 Pseudoalteromonas atlantica T6c putative 2,3,4, 5-tetrahydropyridine-2-carboxylate N-succinyltransferase YP_662954.1 4069317 D 342610 CDS YP_662955.1 109899700 4175172 complement(4070358..4071413) 1 NC_008228.1 PFAM: Bile acid:sodium symporter; KEGG: son:SO0534 arsenical pump membrane protein, putative; bile acid:sodium symporter 4071413 4175172 Patl_3395 Pseudoalteromonas atlantica T6c bile acid:sodium symporter YP_662955.1 4070358 R 342610 CDS YP_662956.1 109899701 4175173 complement(4071428..4072162) 1 NC_008228.1 PFAM: NADPH-dependent FMN reductase; KEGG: bur:Bcep18194_C6565 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 4072162 4175173 Patl_3396 Pseudoalteromonas atlantica T6c NADPH-dependent FMN reductase YP_662956.1 4071428 R 342610 CDS YP_662957.1 109899702 4175174 complement(4072162..4072686) 1 NC_008228.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: ppu:PP1928 arsenate reductase; protein tyrosine phosphatase 4072686 4175174 Patl_3397 Pseudoalteromonas atlantica T6c protein tyrosine phosphatase YP_662957.1 4072162 R 342610 CDS YP_662958.1 109899703 4175175 complement(4072775..4073119) 1 NC_008228.1 PFAM: regulatory protein, ArsR; KEGG: pha:PSHAb0181 putative arsenic resistance operon regulator; ArsR family transcriptional regulator 4073119 4175175 Patl_3398 Pseudoalteromonas atlantica T6c ArsR family transcriptional regulator YP_662958.1 4072775 R 342610 CDS YP_662959.1 109899704 4175176 4073360..4074397 1 NC_008228.1 PFAM: MscS Mechanosensitive ion channel; KEGG: mma:MM2091 putative transport channel protein; mechanosensitive ion channel protein MscS 4074397 4175176 Patl_3399 Pseudoalteromonas atlantica T6c mechanosensitive ion channel protein MscS YP_662959.1 4073360 D 342610 CDS YP_662960.1 109899705 4175177 complement(4074405..4074896) 1 NC_008228.1 PFAM: ribonuclease H; KEGG: pca:Pcar_2273 hypothetical protein; ribonuclease H 4074896 4175177 Patl_3400 Pseudoalteromonas atlantica T6c ribonuclease H YP_662960.1 4074405 R 342610 CDS YP_662961.1 109899706 4175178 4075022..4075519 1 NC_008228.1 KEGG: cps:CPS_1010 hypothetical protein; hypothetical protein 4075519 4175178 Patl_3401 Pseudoalteromonas atlantica T6c hypothetical protein YP_662961.1 4075022 D 342610 CDS YP_662962.1 109899707 4175179 complement(4075532..4075906) 1 NC_008228.1 hypothetical protein 4075906 4175179 Patl_3402 Pseudoalteromonas atlantica T6c hypothetical protein YP_662962.1 4075532 R 342610 CDS YP_662963.1 109899708 4175180 complement(4076082..4076441) 1 NC_008228.1 hypothetical protein 4076441 4175180 Patl_3403 Pseudoalteromonas atlantica T6c hypothetical protein YP_662963.1 4076082 R 342610 CDS YP_662964.1 109899709 4175181 complement(4076893..4077741) 1 NC_008228.1 PFAM: MltA-interacting MipA; KEGG: bur:Bcep18194_B2733 outer membrane protein; MltA-interacting MipA 4077741 4175181 Patl_3404 Pseudoalteromonas atlantica T6c MltA-interacting MipA YP_662964.1 4076893 R 342610 CDS YP_662965.1 109899710 4175182 complement(4077938..4078351) 1 NC_008228.1 KEGG: hch:HCH_06947 hypothetical protein; hypothetical protein 4078351 4175182 Patl_3405 Pseudoalteromonas atlantica T6c hypothetical protein YP_662965.1 4077938 R 342610 CDS YP_662966.1 109899711 4175183 4078721..4079992 1 NC_008228.1 KEGG: ppr:PBPRB1415 putative homocysteine synthase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes DegT/DnrJ/EryC1/StrS aminotransferase aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase 4079992 4175183 Patl_3406 Pseudoalteromonas atlantica T6c O-acetylhomoserine/O-acetylserine sulfhydrylase YP_662966.1 4078721 D 342610 CDS YP_662967.1 109899712 4175184 4080148..4080534 1 NC_008228.1 KEGG: atc:AGR_C_3952 hypothetical protein; hypothetical protein 4080534 4175184 Patl_3407 Pseudoalteromonas atlantica T6c hypothetical protein YP_662967.1 4080148 D 342610 CDS YP_662968.1 109899713 4175185 complement(4080643..4081755) 1 NC_008228.1 KEGG: cps:CPS_4422 alkaline phosphatase D domain protein; alkaline phosphatase D domain-containing protein 4081755 4175185 Patl_3408 Pseudoalteromonas atlantica T6c alkaline phosphatase D domain-containing protein YP_662968.1 4080643 R 342610 CDS YP_662969.1 109899714 4175186 complement(4081736..4082935) 1 NC_008228.1 KEGG: cps:CPS_4421 hypothetical protein; hypothetical protein 4082935 4175186 Patl_3409 Pseudoalteromonas atlantica T6c hypothetical protein YP_662969.1 4081736 R 342610 CDS YP_662970.1 109899715 4175187 complement(4083105..4085450) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_4420 TonB-dependent receptor; TonB-dependent receptor 4085450 4175187 Patl_3410 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_662970.1 4083105 R 342610 CDS YP_662971.1 109899716 4175188 4085752..4086441 1 NC_008228.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: pfo:Pfl_4221 two component transcriptional regulator, winged helix family; two component transcriptional regulator 4086441 4175188 Patl_3411 Pseudoalteromonas atlantica T6c two component transcriptional regulator YP_662971.1 4085752 D 342610 CDS YP_662972.1 109899717 4175189 4086438..4087853 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: ppu:PP1652 sensor histidine kinase; sensor signal transduction histidine kinase 4087853 4175189 Patl_3412 Pseudoalteromonas atlantica T6c sensor signal transduction histidine kinase YP_662972.1 4086438 D 342610 CDS YP_662973.1 109899718 4175190 complement(4087855..4088997) 1 NC_008228.1 KEGG: cps:CPS_4883 hypothetical protein; hypothetical protein 4088997 4175190 Patl_3413 Pseudoalteromonas atlantica T6c hypothetical protein YP_662973.1 4087855 R 342610 CDS YP_662974.1 109899719 4175191 complement(4089018..4091081) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: ilo:IL0069 outer membrane protein; TonB-dependent receptor 4091081 4175191 Patl_3414 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_662974.1 4089018 R 342610 CDS YP_662975.1 109899720 4175192 complement(4091328..4092182) 1 NC_008228.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 4092182 djlA 4175192 djlA Pseudoalteromonas atlantica T6c Dna-J like membrane chaperone protein YP_662975.1 4091328 R 342610 CDS YP_662976.1 109899721 4175193 complement(4092224..4092976) 1 NC_008228.1 PFAM: Nucleotidyl transferase; KEGG: son:SO3634 nucleotidyltransferase family protein; nucleotidyl transferase 4092976 4175193 Patl_3416 Pseudoalteromonas atlantica T6c nucleotidyl transferase YP_662976.1 4092224 R 342610 CDS YP_662977.1 109899722 4175194 complement(4093047..4094084) 1 NC_008228.1 PFAM: aminoglycoside phosphotransferase; KEGG: ilo:IL2228 predicted phosphotransferase related to Ser/Thr protein kinases; aminoglycoside phosphotransferase 4094084 4175194 Patl_3417 Pseudoalteromonas atlantica T6c aminoglycoside phosphotransferase YP_662977.1 4093047 R 342610 CDS YP_662978.1 109899723 4175195 4094239..4096446 1 NC_008228.1 PFAM: OstA-like protein Organic solvent tolerance protein; KEGG: cps:CPS_4523 organic solvent tolerance protein; organic solvent tolerance protein 4096446 4175195 Patl_3418 Pseudoalteromonas atlantica T6c organic solvent tolerance protein YP_662978.1 4094239 D 342610 CDS YP_662979.1 109899724 4175196 4096514..4097809 1 NC_008228.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pha:PSHAa2633 peptidyl-prolyl cis-trans isomerase (PPIase); PpiC-type peptidyl-prolyl cis-trans isomerase 4097809 4175196 Patl_3419 Pseudoalteromonas atlantica T6c PpiC-type peptidyl-prolyl cis-trans isomerase YP_662979.1 4096514 D 342610 CDS YP_662980.1 109899725 4175197 4097813..4098793 1 NC_008228.1 KEGG: pha:PSHAa2634 4-hydroxythreonine-4-phosphate dehydrogenase,(4-(phosphohydroxy)-L-threonine dehydrogenase); TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 4098793 4175197 Patl_3420 Pseudoalteromonas atlantica T6c 4-hydroxythreonine-4-phosphate dehydrogenase YP_662980.1 4097813 D 342610 CDS YP_662981.1 109899726 4175198 4098790..4099596 1 NC_008228.1 TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: vfi:VF0286 dimethyladenosine transferase; dimethyladenosine transferase 4099596 4175198 Patl_3421 Pseudoalteromonas atlantica T6c dimethyladenosine transferase YP_662981.1 4098790 D 342610 CDS YP_662982.1 109899727 4175199 4099597..4099998 1 NC_008228.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 4099998 apaG 4175199 apaG Pseudoalteromonas atlantica T6c ApaG protein YP_662982.1 4099597 D 342610 CDS YP_662983.1 109899728 4175200 4100013..4100813 1 NC_008228.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 4100813 apaH 4175200 apaH Pseudoalteromonas atlantica T6c diadenosine tetraphosphatase YP_662983.1 4100013 D 342610 CDS YP_662984.1 109899729 4175201 4101210..4103234 1 NC_008228.1 PFAM: histidine kinase, HAMP region chemotaxis sensory transducer; KEGG: cps:CPS_4528 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4103234 4175201 Patl_3424 Pseudoalteromonas atlantica T6c methyl-accepting chemotaxis sensory transducer YP_662984.1 4101210 D 342610 CDS YP_662985.1 109899730 4175202 complement(4103318..4104676) 1 NC_008228.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III 4104676 4175202 Patl_3425 Pseudoalteromonas atlantica T6c aspartate kinase III YP_662985.1 4103318 R 342610 CDS YP_662986.1 109899731 4175203 4104915..4106477 1 NC_008228.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 4106477 4175203 Patl_3426 Pseudoalteromonas atlantica T6c amidase YP_662986.1 4104915 D 342610 CDS YP_662987.1 109899732 4175204 complement(4106593..4107057) 1 NC_008228.1 PFAM: protein of unknown function DUF192; KEGG: rso:RSc2494 hypothetical signal peptide protein; hypothetical protein 4107057 4175204 Patl_3427 Pseudoalteromonas atlantica T6c hypothetical protein YP_662987.1 4106593 R 342610 CDS YP_662988.1 109899733 4175205 complement(4107334..4109946) 1 NC_008228.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 4109946 4175205 Patl_3428 Pseudoalteromonas atlantica T6c bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_662988.1 4107334 R 342610 CDS YP_662989.1 109899734 4175206 4110367..4111443 1 NC_008228.1 PFAM: Strictosidine synthase; KEGG: pae:PA1293 hypothetical protein; strictosidine synthase 4111443 4175206 Patl_3429 Pseudoalteromonas atlantica T6c strictosidine synthase YP_662989.1 4110367 D 342610 CDS YP_662990.1 109899735 4175207 4111791..4112336 1 NC_008228.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI; KEGG: xcv:XCV3076 DJ-1/PfpI family protein; PfpI family intracellular peptidase 4112336 4175207 Patl_3430 Pseudoalteromonas atlantica T6c PfpI family intracellular peptidase YP_662990.1 4111791 D 342610 CDS YP_662991.1 109899736 4175208 complement(4112396..4114750) 1 NC_008228.1 PFAM: Radical SAM Radical SAM-like; SMART: Elongator protein 3/MiaB/NifB; KEGG: pha:PSHAa0508 hypothetical protein; radical SAM protein 4114750 4175208 Patl_3431 Pseudoalteromonas atlantica T6c radical SAM protein YP_662991.1 4112396 R 342610 CDS YP_662992.1 109899737 4175209 complement(4114966..4116252) 1 NC_008228.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1; KEGG: son:SO1994 membrane-bound lytic transglycolase-related protein; lytic murein transglycosylase 4116252 4175209 Patl_3432 Pseudoalteromonas atlantica T6c lytic murein transglycosylase YP_662992.1 4114966 R 342610 CDS YP_662993.1 109899738 4175210 complement(4116453..4117019) 1 NC_008228.1 KEGG: ava:Ava_5067 formylmethionine deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 4117019 4175210 Patl_3433 Pseudoalteromonas atlantica T6c peptide deformylase YP_662993.1 4116453 R 342610 CDS YP_662994.1 109899739 4175211 complement(4117046..4118794) 1 NC_008228.1 KEGG: son:SO3665 ABC transporter, ATP-binding/permease protein, putative; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase; lipid ABC transporter ATPase/inner membrane protein 4118794 4175211 Patl_3434 Pseudoalteromonas atlantica T6c lipid ABC transporter ATPase/inner membrane protein YP_662994.1 4117046 R 342610 CDS YP_662995.1 109899740 4175212 4118991..4120673 1 NC_008228.1 PFAM: sulfatase protein of unknown function DUF1705; KEGG: par:Psyc_1161 probable integral membrane protein; sulfatase 4120673 4175212 Patl_3435 Pseudoalteromonas atlantica T6c sulfatase YP_662995.1 4118991 D 342610 CDS YP_662996.1 109899741 4175213 4120933..4121865 1 NC_008228.1 TIGRFAM: PEP motif putative anchor-like; PFAM: lipolytic enzyme, G-D-S-L; KEGG: nmu:Nmul_A1186 lipolytic enzyme, G-D-S-L; PEP domain-containing protein 4121865 4175213 Patl_3436 Pseudoalteromonas atlantica T6c PEP domain-containing protein YP_662996.1 4120933 D 342610 CDS YP_662997.1 109899742 4175214 complement(4122052..4124106) 1 NC_008228.1 KEGG: cps:CPS_1933 sensory box/GGDEF/EAL domain protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL PAS fold-3 PAS fold-4 PAS fold; SMART: PAS; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4124106 4175214 Patl_3437 Pseudoalteromonas atlantica T6c PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_662997.1 4122052 R 342610 CDS YP_662998.1 109899743 4175215 complement(4124602..4125276) 1 NC_008228.1 KEGG: ehi:19.t00025 hypothetical protein; hypothetical protein 4125276 4175215 Patl_3438 Pseudoalteromonas atlantica T6c hypothetical protein YP_662998.1 4124602 R 342610 CDS YP_662999.1 109899744 4175216 complement(4125488..4126507) 1 NC_008228.1 KEGG: vpa:VPA1488 hypothetical protein; hypothetical protein 4126507 4175216 Patl_3439 Pseudoalteromonas atlantica T6c hypothetical protein YP_662999.1 4125488 R 342610 CDS YP_663000.1 109899745 4175217 4126663..4127505 1 NC_008228.1 KEGG: pha:PSHAa0339 hypothetical protein; hypothetical protein 4127505 4175217 Patl_3440 Pseudoalteromonas atlantica T6c hypothetical protein YP_663000.1 4126663 D 342610 CDS YP_663001.1 109899746 4175218 complement(4127662..4130193) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa1271 TonB-dependent receptor; TonB-dependent receptor 4130193 4175218 Patl_3441 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_663001.1 4127662 R 342610 CDS YP_663002.1 109899747 4175219 4130693..4132144 1 NC_008228.1 with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; exonuclease subunit SbcD 4132144 4175219 Patl_3442 Pseudoalteromonas atlantica T6c exonuclease subunit SbcD YP_663002.1 4130693 D 342610 CDS YP_663003.1 109899748 4175220 4132144..4135842 1 NC_008228.1 PFAM: SMC protein-like; KEGG: vfi:VF1168 exonuclease SbcC; SMC protein-like protein 4135842 4175220 Patl_3443 Pseudoalteromonas atlantica T6c SMC protein-like protein YP_663003.1 4132144 D 342610 CDS YP_663004.1 109899749 4175223 4137367..4137651 1 NC_008228.1 PFAM: helix-turn-helix motif; KEGG: ecc:c5477 hypothetical protein; XRE family transcriptional regulator 4137651 4175223 Patl_3446 Pseudoalteromonas atlantica T6c XRE family transcriptional regulator YP_663004.1 4137367 D 342610 CDS YP_663005.1 109899750 4175225 4138629..4139237 1 NC_008228.1 KEGG: eli:ELI_05275 hypothetical protein; hypothetical protein 4139237 4175225 Patl_3448 Pseudoalteromonas atlantica T6c hypothetical protein YP_663005.1 4138629 D 342610 CDS YP_663006.1 109899751 4175227 complement(4140711..4140992) 1 NC_008228.1 hypothetical protein 4140992 4175227 Patl_3450 Pseudoalteromonas atlantica T6c hypothetical protein YP_663006.1 4140711 R 342610 CDS YP_663007.1 109899752 4175228 4141105..4142313 1 NC_008228.1 PFAM: transposase, IS4; KEGG: ppr:PBPRB1072 hypothetical transposase; transposase, IS4 4142313 4175228 Patl_3451 Pseudoalteromonas atlantica T6c transposase, IS4 YP_663007.1 4141105 D 342610 CDS YP_663008.1 109899753 4175229 complement(4142276..4143835) 1 NC_008228.1 KEGG: pst:PSPTO3650 hypothetical protein; hypothetical protein 4143835 4175229 Patl_3452 Pseudoalteromonas atlantica T6c hypothetical protein YP_663008.1 4142276 R 342610 CDS YP_663009.1 109899754 4175230 complement(4143957..4144598) 1 NC_008228.1 KEGG: psb:Psyr_2348 hypothetical protein; hypothetical protein 4144598 4175230 Patl_3453 Pseudoalteromonas atlantica T6c hypothetical protein YP_663009.1 4143957 R 342610 CDS YP_663010.1 109899755 4175231 complement(4144869..4145486) 1 NC_008228.1 hypothetical protein 4145486 4175231 Patl_3454 Pseudoalteromonas atlantica T6c hypothetical protein YP_663010.1 4144869 R 342610 CDS YP_663011.1 109899756 4175232 4145801..4147093 1 NC_008228.1 PFAM: major facilitator superfamily MFS_1; KEGG: ccr:CC2485 major facilitator family transporter; major facilitator superfamily transporter 4147093 4175232 Patl_3455 Pseudoalteromonas atlantica T6c major facilitator superfamily transporter YP_663011.1 4145801 D 342610 CDS YP_663012.1 109899757 4175233 complement(4147128..4148921) 1 NC_008228.1 PFAM: helicase-like type III restriction enzyme, res subunit DEAD/DEAH box helicase-like; KEGG: spt:SPA0627 putative helicase; type III restriction enzyme, res subunit 4148921 4175233 Patl_3456 Pseudoalteromonas atlantica T6c type III restriction enzyme, res subunit YP_663012.1 4147128 R 342610 CDS YP_663013.1 109899758 4175234 complement(4148999..4150171) 1 NC_008228.1 PFAM: nucleoside phosphatase GDA1/CD39; KEGG: hsa:954 ectonucleoside triphosphate diphosphohydrolase 2; nucleoside phosphatase GDA1/CD39 4150171 4175234 Patl_3457 Pseudoalteromonas atlantica T6c nucleoside phosphatase GDA1/CD39 YP_663013.1 4148999 R 342610 CDS YP_663014.1 109899759 4175235 complement(4150342..4151037) 1 NC_008228.1 TIGRFAM: Glutaredoxin, GrxB family; PFAM: glutaredoxin 2-like; KEGG: stm:STM1165 glutaredoxin 2; GrxB family glutaredoxin 4151037 4175235 Patl_3458 Pseudoalteromonas atlantica T6c GrxB family glutaredoxin YP_663014.1 4150342 R 342610 CDS YP_663015.1 109899760 4175236 4151323..4153071 1 NC_008228.1 PFAM: gamma-glutamyltranspeptidase; KEGG: ccr:CC0531 gamma-glutamyltransferase; gamma-glutamyltransferase 4153071 4175236 Patl_3459 Pseudoalteromonas atlantica T6c gamma-glutamyltransferase YP_663015.1 4151323 D 342610 CDS YP_663016.1 109899761 4175237 complement(4153428..4153706) 1 NC_008228.1 hypothetical protein 4153706 4175237 Patl_3460 Pseudoalteromonas atlantica T6c hypothetical protein YP_663016.1 4153428 R 342610 CDS YP_663017.1 109899762 4175238 complement(4153740..4154228) 1 NC_008228.1 hypothetical protein 4154228 4175238 Patl_3461 Pseudoalteromonas atlantica T6c hypothetical protein YP_663017.1 4153740 R 342610 CDS YP_663018.1 109899763 4175239 complement(4154233..4154538) 1 NC_008228.1 KEGG: pha:PSHAa2514 hypothetical protein; hypothetical protein 4154538 4175239 Patl_3462 Pseudoalteromonas atlantica T6c hypothetical protein YP_663018.1 4154233 R 342610 CDS YP_663019.1 109899764 4175240 complement(4154948..4155550) 1 NC_008228.1 PFAM: protein of unknown function DUF502; KEGG: pca:Pcar_2706 hypothetical protein; hypothetical protein 4155550 4175240 Patl_3463 Pseudoalteromonas atlantica T6c hypothetical protein YP_663019.1 4154948 R 342610 CDS YP_663020.1 109899765 4175241 complement(4155942..4157519) 1 NC_008228.1 PFAM: histidine kinase, HAMP region chemotaxis sensory transducer; KEGG: pfl:PFL_4544 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 4157519 4175241 Patl_3464 Pseudoalteromonas atlantica T6c methyl-accepting chemotaxis sensory transducer YP_663020.1 4155942 R 342610 CDS YP_663021.1 109899766 4175242 complement(4157733..4158242) 1 NC_008228.1 PFAM: regulatory proteins, AsnC/Lrp; KEGG: mlo:mlr8310 transcriptional regulator; AsnC family transcriptional regulator 4158242 4175242 Patl_3465 Pseudoalteromonas atlantica T6c AsnC family transcriptional regulator YP_663021.1 4157733 R 342610 CDS YP_663022.1 109899767 4175243 4158456..4160612 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: dde:Dde_1600 receptor precursor-mostly Fe transport; TonB-dependent receptor 4160612 4175243 Patl_3466 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_663022.1 4158456 D 342610 CDS YP_663023.1 109899768 4175244 4160699..4162018 1 NC_008228.1 PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: bha:BH1882 cytosine permease; cytosine/purines uracil thiamine allantoin permease 4162018 4175244 Patl_3467 Pseudoalteromonas atlantica T6c cytosine/purines uracil thiamine allantoin permease YP_663023.1 4160699 D 342610 CDS YP_663024.1 109899769 4175245 4162182..4163303 1 NC_008228.1 PFAM: protein of unknown function DUF917; KEGG: chy:CHY_1336 hypothetical protein; hypothetical protein 4163303 4175245 Patl_3468 Pseudoalteromonas atlantica T6c hypothetical protein YP_663024.1 4162182 D 342610 CDS YP_663025.1 109899770 4175246 complement(4163410..4164135) 1 NC_008228.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 pseudouridine synthase; KEGG: ccr:CC1838 ribosomal small subunit pseudouridine synthase A; pseudouridine synthase Rsu 4164135 4175246 Patl_3469 Pseudoalteromonas atlantica T6c pseudouridine synthase Rsu YP_663025.1 4163410 R 342610 CDS YP_663026.1 109899771 4175247 complement(4164228..4165826) 1 NC_008228.1 PFAM: sulfotransferase TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: pha:PSHAb0253 putative orphan protein ; putative tetratricopeptide repeat domain; sulfotransferase 4165826 4175247 Patl_3470 Pseudoalteromonas atlantica T6c sulfotransferase YP_663026.1 4164228 R 342610 CDS YP_663027.1 109899772 4175248 complement(4165924..4168290) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAb0254 putative outer membrane TonB-dependent receptor; TonB-dependent receptor 4168290 4175248 Patl_3471 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_663027.1 4165924 R 342610 CDS YP_663028.1 109899773 4175249 complement(4168942..4170132) 1 NC_008228.1 PFAM: globin oxidoreductase FAD/NAD(P)-binding Oxidoreductase FAD-binding region; KEGG: pha:PSHAa2880 two-domains flavohemoprotein: one is a heme-containing oxygen binding domain in the N-terminal region and the other is an FAD-containing reductase domain found in the C-terminal region; globin 4170132 4175249 Patl_3472 Pseudoalteromonas atlantica T6c globin YP_663028.1 4168942 R 342610 CDS YP_663029.1 109899774 4175250 complement(4170228..4171496) 1 NC_008228.1 PFAM: NnrS; KEGG: pha:PSHAa2881 integral inner membrane permease; protein NnrS 4171496 4175250 Patl_3473 Pseudoalteromonas atlantica T6c protein NnrS YP_663029.1 4170228 R 342610 CDS YP_663030.1 109899775 4175251 complement(4171497..4171826) 1 NC_008228.1 KEGG: pha:PSHAa2882 hypothetical protein ; membrane protein; hypothetical protein 4171826 4175251 Patl_3474 Pseudoalteromonas atlantica T6c hypothetical protein YP_663030.1 4171497 R 342610 CDS YP_663031.1 109899776 4175252 4172076..4173665 1 NC_008228.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 4173665 4175252 Patl_3475 Pseudoalteromonas atlantica T6c anaerobic nitric oxide reductase transcriptional regulator YP_663031.1 4172076 D 342610 CDS YP_663032.1 109899777 4175253 complement(4173723..4174688) 1 NC_008228.1 PFAM: beta-lactamase-like; KEGG: dar:Daro_2878 beta-lactamase-like; beta-lactamase-like protein 4174688 4175253 Patl_3476 Pseudoalteromonas atlantica T6c beta-lactamase-like protein YP_663032.1 4173723 R 342610 CDS YP_663033.1 109899778 4175254 4175011..4176312 1 NC_008228.1 KEGG: hch:HCH_03096 FOG: PAS/PAC domain; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer PAS fold-3 PAS fold-4 PAS fold; SMART: PAC motif; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 4176312 4175254 Patl_3477 Pseudoalteromonas atlantica T6c methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_663033.1 4175011 D 342610 CDS YP_663034.1 109899779 4175255 complement(4176354..4176800) 1 NC_008228.1 catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide; cyanate hydratase 4176800 4175255 Patl_3478 Pseudoalteromonas atlantica T6c cyanate hydratase YP_663034.1 4176354 R 342610 CDS YP_663035.1 109899780 4175256 complement(4176859..4178601) 1 NC_008228.1 PFAM: protein kinase protein phosphatase 2C-like; SMART: Tyrosine protein kinase Serine/threonine protein kinase; KEGG: hch:HCH_03181 serine/threonine protein kinase; protein serine/threonine phosphatase-like protein 4178601 4175256 Patl_3479 Pseudoalteromonas atlantica T6c protein serine/threonine phosphatase-like protein YP_663035.1 4176859 R 342610 CDS YP_663036.1 109899781 4175257 complement(4178588..4179454) 1 NC_008228.1 PFAM: formate/nitrite transporter; KEGG: tbd:Tbd_1943 putativel formate transporter; formate/nitrite transporter 4179454 4175257 Patl_3480 Pseudoalteromonas atlantica T6c formate/nitrite transporter YP_663036.1 4178588 R 342610 CDS YP_663037.1 109899782 4175260 complement(4180581..4181126) 1 NC_008228.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 4181126 4175260 Patl_3481 Pseudoalteromonas atlantica T6c oligoribonuclease YP_663037.1 4180581 R 342610 CDS YP_663038.1 109899783 4175261 4181239..4182267 1 NC_008228.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 4182267 4175261 Patl_3482 Pseudoalteromonas atlantica T6c ribosome-associated GTPase YP_663038.1 4181239 D 342610 CDS YP_663039.1 109899784 4175262 4182428..4183288 1 NC_008228.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 4183288 psd 4175262 psd Pseudoalteromonas atlantica T6c phosphatidylserine decarboxylase YP_663039.1 4182428 D 342610 CDS YP_663040.1 109899785 4175263 4183291..4184157 1 NC_008228.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: cps:CPS_3514 membrane protein; hypothetical protein 4184157 4175263 Patl_3484 Pseudoalteromonas atlantica T6c hypothetical protein YP_663040.1 4183291 D 342610 CDS YP_663041.1 109899786 4175264 4184167..4184892 1 NC_008228.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cps:CPS_0915 glycerophosphoryl diester phosphodiesterase family protein; glycerophosphoryl diester phosphodiesterase 4184892 4175264 Patl_3485 Pseudoalteromonas atlantica T6c glycerophosphoryl diester phosphodiesterase YP_663041.1 4184167 D 342610 CDS YP_663042.1 109899787 4175265 complement(4184958..4185368) 1 NC_008228.1 KEGG: cps:CPS_0396 hypothetical protein; hypothetical protein 4185368 4175265 Patl_3486 Pseudoalteromonas atlantica T6c hypothetical protein YP_663042.1 4184958 R 342610 CDS YP_663043.1 109899788 4175266 complement(4185529..4186809) 1 NC_008228.1 KEGG: ppr:PBPRA2469 conserved hypothetical protein; hypothetical protein 4186809 4175266 Patl_3487 Pseudoalteromonas atlantica T6c hypothetical protein YP_663043.1 4185529 R 342610 CDS YP_663044.1 109899789 4175267 4187062..4188423 1 NC_008228.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: peptidase M24; KEGG: pha:PSHAb0215 putative metal-dependent dipeptidase; twin-arginine translocation pathway signal protein 4188423 4175267 Patl_3488 Pseudoalteromonas atlantica T6c twin-arginine translocation pathway signal protein YP_663044.1 4187062 D 342610 CDS YP_663045.1 109899790 4175268 4188439..4190199 1 NC_008228.1 PFAM: protein of unknown function DUF885; KEGG: pha:PSHAb0132 conserved periplasmic protein of unknown function; hypothetical protein 4190199 4175268 Patl_3489 Pseudoalteromonas atlantica T6c hypothetical protein YP_663045.1 4188439 D 342610 CDS YP_663046.1 109899791 4175269 4190417..4192045 1 NC_008228.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: peptidase U62, modulator of DNA gyrase; KEGG: ccr:CC2823 TldD/PmbA family protein; twin-arginine translocation pathway signal protein 4192045 4175269 Patl_3490 Pseudoalteromonas atlantica T6c twin-arginine translocation pathway signal protein YP_663046.1 4190417 D 342610 CDS YP_663047.1 109899792 4175270 4192072..4193406 1 NC_008228.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: xcb:XC_0094 TldD protein; C69 family peptidase 4193406 4175270 Patl_3491 Pseudoalteromonas atlantica T6c C69 family peptidase YP_663047.1 4192072 D 342610 CDS YP_663048.1 109899793 4175271 4193497..4194207 1 NC_008228.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: ccr:CC2825 hypothetical protein; twin-arginine translocation pathway signal protein 4194207 4175271 Patl_3492 Pseudoalteromonas atlantica T6c twin-arginine translocation pathway signal protein YP_663048.1 4193497 D 342610 CDS YP_663049.1 109899794 4175272 4194257..4195327 1 NC_008228.1 PFAM: ATPase associated with various cellular activities, AAA_3 ATPase associated with various cellular activities, AAA_5; KEGG: xcv:XCV0089 MoxR-like ATPase; ATPase 4195327 4175272 Patl_3493 Pseudoalteromonas atlantica T6c ATPase YP_663049.1 4194257 D 342610 CDS YP_663050.1 109899795 4175273 4195330..4196232 1 NC_008228.1 KEGG: xcb:XC_0091 hypothetical protein; hypothetical protein 4196232 4175273 Patl_3494 Pseudoalteromonas atlantica T6c hypothetical protein YP_663050.1 4195330 D 342610 CDS YP_663051.1 109899796 4175274 4196235..4197740 1 NC_008228.1 TIGRFAM: conserved hypothetical membrane protein; hypothetical protein 4197740 4175274 Patl_3495 Pseudoalteromonas atlantica T6c hypothetical protein YP_663051.1 4196235 D 342610 CDS YP_663052.1 109899797 4175275 4197740..4200142 1 NC_008228.1 KEGG: xcb:XC_0089 hypothetical protein; hypothetical protein 4200142 4175275 Patl_3496 Pseudoalteromonas atlantica T6c hypothetical protein YP_663052.1 4197740 D 342610 CDS YP_663053.1 109899798 4175276 4200139..4202292 1 NC_008228.1 KEGG: ccr:CC2830 hypothetical protein; hypothetical protein 4202292 4175276 Patl_3497 Pseudoalteromonas atlantica T6c hypothetical protein YP_663053.1 4200139 D 342610 CDS YP_663054.1 109899799 4175277 complement(4202361..4202969) 1 NC_008228.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: hch:HCH_01701 multiple antibiotic transporter; multiple antibiotic resistance (MarC)-like protein 4202969 4175277 Patl_3498 Pseudoalteromonas atlantica T6c multiple antibiotic resistance (MarC)-like protein YP_663054.1 4202361 R 342610 CDS YP_663055.1 109899800 4175278 complement(4203269..4203727) 1 NC_008228.1 KEGG: vfi:VF1386 acetyltransferase, GNAT family; acetyltransferase 4203727 4175278 Patl_3499 Pseudoalteromonas atlantica T6c acetyltransferase YP_663055.1 4203269 R 342610 CDS YP_663056.1 109899801 4175279 complement(4203804..4204271) 1 NC_008228.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: cps:CPS_3090 YbaK/EbsC protein; ybaK/ebsC protein 4204271 4175279 Patl_3500 Pseudoalteromonas atlantica T6c ybaK/ebsC protein YP_663056.1 4203804 R 342610 CDS YP_663057.1 109899802 4175280 complement(4204304..4205530) 1 NC_008228.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: vvu:VV11553 hypothetical protein; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 4205530 4175280 Patl_3501 Pseudoalteromonas atlantica T6c UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase YP_663057.1 4204304 R 342610 CDS YP_663058.1 109899803 4175281 complement(4205570..4206901) 1 NC_008228.1 PFAM: peptidase M24 peptidase M24B, X-Pro dipeptidase/aminopeptidase-like; KEGG: pha:PSHAa0562 proline aminopeptidase P II; peptidase M24 4206901 4175281 Patl_3502 Pseudoalteromonas atlantica T6c peptidase M24 YP_663058.1 4205570 R 342610 CDS YP_663059.1 109899804 4175282 complement(4206914..4207483) 1 NC_008228.1 TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: pha:PSHAa0561 hypothetical protein; yecA family protein 4207483 4175282 Patl_3503 Pseudoalteromonas atlantica T6c yecA family protein YP_663059.1 4206914 R 342610 CDS YP_663060.1 109899805 4175283 4208026..4208436 1 NC_008228.1 hypothetical protein 4208436 4175283 Patl_3504 Pseudoalteromonas atlantica T6c hypothetical protein YP_663060.1 4208026 D 342610 CDS YP_663061.1 109899806 4175284 4208531..4209427 1 NC_008228.1 PFAM: PfkB; KEGG: hch:HCH_02313 sugar kinase, ribokinase family; PfkB protein 4209427 4175284 Patl_3505 Pseudoalteromonas atlantica T6c PfkB protein YP_663061.1 4208531 D 342610 CDS YP_663062.1 109899807 4175285 4209449..4210384 1 NC_008228.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: hch:HCH_02314 inosine-uridine nucleoside N-ribohydrolase; inosine/uridine-preferring nucleoside hydrolase 4210384 4175285 Patl_3506 Pseudoalteromonas atlantica T6c inosine/uridine-preferring nucleoside hydrolase YP_663062.1 4209449 D 342610 CDS YP_663063.1 109899808 4175286 4210540..4211136 1 NC_008228.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: vch:VC2479 hypothetical protein; 5-formyltetrahydrofolate cyclo-ligase 4211136 4175286 Patl_3507 Pseudoalteromonas atlantica T6c 5-formyltetrahydrofolate cyclo-ligase YP_663063.1 4210540 D 342610 CDS YP_663064.1 109899809 4175287 4211277..4211933 1 NC_008228.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 4211933 4175287 Patl_3508 Pseudoalteromonas atlantica T6c ribose-5-phosphate isomerase A YP_663064.1 4211277 D 342610 CDS YP_663065.1 109899810 4175288 4212136..4213173 1 NC_008228.1 KEGG: ilo:IL1776 methyl-accepting chemotaxis protein (CHASE3,HAMP,MCP domains); hypothetical protein 4213173 4175288 Patl_3509 Pseudoalteromonas atlantica T6c hypothetical protein YP_663065.1 4212136 D 342610 CDS YP_663066.1 109899811 4175289 complement(4213184..4213576) 1 NC_008228.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: pha:PSHAa2744 7,8-dihydro-8-oxoguanine-triphosphatase; mutator MutT protein 4213576 4175289 Patl_3510 Pseudoalteromonas atlantica T6c mutator MutT protein YP_663066.1 4213184 R 342610 CDS YP_663067.1 109899812 4175290 complement(4213670..4216399) 1 NC_008228.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 4216399 4175290 Patl_3511 Pseudoalteromonas atlantica T6c preprotein translocase subunit SecA YP_663067.1 4213670 R 342610 CDS YP_663068.1 109899813 4175291 complement(4216574..4217473) 1 NC_008228.1 PFAM: peptidase M23B; KEGG: cps:CPS_4455 M23/M37 peptidase domain protein; peptidase M23B 4217473 4175291 Patl_3512 Pseudoalteromonas atlantica T6c peptidase M23B YP_663068.1 4216574 R 342610 CDS YP_663069.1 109899814 4175292 complement(4217612..4218526) 1 NC_008228.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 4218526 lpxC 4175292 lpxC Pseudoalteromonas atlantica T6c UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_663069.1 4217612 R 342610 CDS YP_663070.1 109899815 4175293 complement(4218703..4219875) 1 NC_008228.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase Tubulin/FtsZ-like; KEGG: cps:CPS_4459 cell division protein FtsZ; cell division protein FtsZ 4219875 4175293 Patl_3514 Pseudoalteromonas atlantica T6c cell division protein FtsZ YP_663070.1 4218703 R 342610 CDS YP_663071.1 109899816 4175294 complement(4219959..4221188) 1 NC_008228.1 PFAM: cell division protein FtsA; KEGG: cps:CPS_4461 cell division protein FtsA; cell division protein FtsA 4221188 4175294 Patl_3515 Pseudoalteromonas atlantica T6c cell division protein FtsA YP_663071.1 4219959 R 342610 CDS YP_663072.1 109899817 4175295 complement(4221210..4221971) 1 NC_008228.1 PFAM: cell division protein FtsQ Polypeptide-transport-associated, FtsQ-type; KEGG: cps:CPS_4462 cell division protein FtsQ; cell division protein FtsQ 4221971 4175295 Patl_3516 Pseudoalteromonas atlantica T6c cell division protein FtsQ YP_663072.1 4221210 R 342610 CDS YP_663073.1 109899818 4175296 complement(4221977..4222933) 1 NC_008228.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 4222933 ddl 4175296 ddl Pseudoalteromonas atlantica T6c D-alanine--D-alanine ligase YP_663073.1 4221977 R 342610 CDS YP_663074.1 109899819 4175297 complement(4222930..4224384) 1 NC_008228.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 4224384 murC 4175297 murC Pseudoalteromonas atlantica T6c UDP-N-acetylmuramate--L-alanine ligase YP_663074.1 4222930 R 342610 CDS YP_663075.1 109899820 4175298 complement(4224381..4225529) 1 NC_008228.1 KEGG: son:SO4219 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase, family 28 glycosyltransferase 28-like; UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase 4225529 4175298 Patl_3519 Pseudoalteromonas atlantica T6c UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase YP_663075.1 4224381 R 342610 CDS YP_663076.1 109899821 4175299 complement(4225522..4226985) 1 NC_008228.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: cps:CPS_4466 cell division protein FtsW; cell division protein FtsW 4226985 4175299 Patl_3520 Pseudoalteromonas atlantica T6c cell division protein FtsW YP_663076.1 4225522 R 342610 CDS YP_663077.1 109899822 4175300 complement(4226982..4228307) 1 NC_008228.1 TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; KEGG: hin:HI1136 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; UDP-N-acetylmuramoylalanine--D-glutamate ligase 4228307 4175300 Patl_3521 Pseudoalteromonas atlantica T6c UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_663077.1 4226982 R 342610 CDS YP_663078.1 109899823 4175301 complement(4228323..4229399) 1 NC_008228.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 4229399 mraY 4175301 mraY Pseudoalteromonas atlantica T6c phospho-N-acetylmuramoyl-pentapeptide- transferase YP_663078.1 4228323 R 342610 CDS YP_663079.1 109899824 4175302 complement(4229399..4230814) 1 NC_008228.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase-like cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; KEGG: pha:PSHAa2508 D-alanine:D-alanine-adding enzyme; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 4230814 4175302 Patl_3523 Pseudoalteromonas atlantica T6c UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase YP_663079.1 4229399 R 342610 CDS YP_663080.1 109899825 4175303 complement(4230811..4232403) 1 NC_008228.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetases; PFAM: cytoplasmic peptidoglycan synthetase-like cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; KEGG: pmu:PM0137 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; UDP-N-acetylmuramyl-tripeptide synthetases 4232403 4175303 Patl_3524 Pseudoalteromonas atlantica T6c UDP-N-acetylmuramyl-tripeptide synthetases YP_663080.1 4230811 R 342610 CDS YP_663081.1 109899826 4175304 complement(4232393..4234153) 1 NC_008228.1 PFAM: penicillin-binding protein, transpeptidase Penicillin-binding protein, dimerisation domain; KEGG: cps:CPS_4471 peptidoglycan synthetase FtsI; peptidoglycan glycosyltransferase 4234153 4175304 Patl_3525 Pseudoalteromonas atlantica T6c peptidoglycan glycosyltransferase YP_663081.1 4232393 R 342610 CDS YP_663082.1 109899827 4175305 complement(4234150..4234470) 1 NC_008228.1 PFAM: cell division protein FtsL; KEGG: vvy:VV0607 cell division protein FtsL; cell division protein FtsL 4234470 4175305 Patl_3526 Pseudoalteromonas atlantica T6c cell division protein FtsL YP_663082.1 4234150 R 342610 CDS YP_663083.1 109899828 4175306 complement(4234467..4235402) 1 NC_008228.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: pha:PSHAa2512 S-adenosyl-methyltransferase; S-adenosyl-methyltransferase MraW 4235402 mraW 4175306 mraW Pseudoalteromonas atlantica T6c S-adenosyl-methyltransferase MraW YP_663083.1 4234467 R 342610 CDS YP_663084.1 109899829 4175307 complement(4235402..4235860) 1 NC_008228.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 4235860 4175307 Patl_3528 Pseudoalteromonas atlantica T6c cell division protein MraZ YP_663084.1 4235402 R 342610 CDS YP_663085.1 109899830 4175308 4236284..4237096 1 NC_008228.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mll7191 putative oxidoreductase; short-chain dehydrogenase/reductase SDR 4237096 4175308 Patl_3529 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_663085.1 4236284 D 342610 CDS YP_663086.1 109899831 4175309 4237096..4238052 1 NC_008228.1 PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: ccr:CC0785 2-dehydro-3-deoxygalactonokinase; 2-keto-3-deoxy-galactonokinase 4238052 4175309 Patl_3530 Pseudoalteromonas atlantica T6c 2-keto-3-deoxy-galactonokinase YP_663086.1 4237096 D 342610 CDS YP_663087.1 109899832 4175310 4238054..4238983 1 NC_008228.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: pfo:Pfl_3453 senescence marker protein-30 (SMP-30); SMP-30/gluconolaconase/LRE-like region 4238983 4175310 Patl_3531 Pseudoalteromonas atlantica T6c SMP-30/gluconolaconase/LRE-like region YP_663087.1 4238054 D 342610 CDS YP_663088.1 109899833 4175311 4239051..4239785 1 NC_008228.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: ccr:CC0783 transcriptional regulator, GntR family; GntR family transcriptional regulator 4239785 4175311 Patl_3532 Pseudoalteromonas atlantica T6c GntR family transcriptional regulator YP_663088.1 4239051 D 342610 CDS YP_663089.1 109899834 4175312 4239824..4241317 1 NC_008228.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: gox:GOX2090 glycerol kinase; glycerol kinase 4241317 4175312 Patl_3533 Pseudoalteromonas atlantica T6c glycerol kinase YP_663089.1 4239824 D 342610 CDS YP_663090.1 109899835 4175313 4241314..4242396 1 NC_008228.1 PFAM: Aldose 1-epimerase; KEGG: sco:SCO2407 putative aldose 1-epimerase; aldose 1-epimerase 4242396 4175313 Patl_3534 Pseudoalteromonas atlantica T6c aldose 1-epimerase YP_663090.1 4241314 D 342610 CDS YP_663091.1 109899836 4175314 complement(4242477..4243469) 1 NC_008228.1 KEGG: pfl:PFL_1898 hypothetical protein; hypothetical protein 4243469 4175314 Patl_3535 Pseudoalteromonas atlantica T6c hypothetical protein YP_663091.1 4242477 R 342610 CDS YP_663092.1 109899837 4175315 complement(4243715..4244347) 1 NC_008228.1 PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 4244347 4175315 Patl_3536 Pseudoalteromonas atlantica T6c antibiotic biosynthesis monooxygenase YP_663092.1 4243715 R 342610 CDS YP_663093.1 109899838 4175316 complement(4244525..4245151) 1 NC_008228.1 hypothetical protein 4245151 4175316 Patl_3537 Pseudoalteromonas atlantica T6c hypothetical protein YP_663093.1 4244525 R 342610 CDS YP_663094.1 109899839 4175317 complement(4245144..4245653) 1 NC_008228.1 PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: pfl:PFL_0173 RNA polymerase sigma-70 factor, ECF subfamily, putative; ECF subfamily RNA polymerase sigma-24 factor 4245653 4175317 Patl_3538 Pseudoalteromonas atlantica T6c ECF subfamily RNA polymerase sigma-24 factor YP_663094.1 4245144 R 342610 CDS YP_663095.1 109899840 4175318 complement(4245779..4246438) 1 NC_008228.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pha:PSHAa1191 TonB2 protein; iron acquisition via a siderophore-mediated active transport; TonB family protein 4246438 4175318 Patl_3539 Pseudoalteromonas atlantica T6c TonB family protein YP_663095.1 4245779 R 342610 CDS YP_663096.1 109899841 4175319 complement(4246624..4248060) 1 NC_008228.1 KEGG: bfs:BF1809 sialate O-acetylesterase; hypothetical protein 4248060 4175319 Patl_3540 Pseudoalteromonas atlantica T6c hypothetical protein YP_663096.1 4246624 R 342610 CDS YP_663097.1 109899842 4175320 complement(4248496..4251525) 1 NC_008228.1 KEGG: pfl:PFL_4888 sigma-54 dependent DNA-binding response regulator; TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein sigma-54 factor, interaction region; SMART: ATPase; response regulator receiver protein 4251525 4175320 Patl_3541 Pseudoalteromonas atlantica T6c response regulator receiver protein YP_663097.1 4248496 R 342610 CDS YP_663098.1 109899843 4175321 complement(4251522..4253294) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL response regulator receiver; KEGG: noc:Noc_1271 hybrid signal transduction histidine kinase and diguanylate cyclase/phosphodiesterase; response regulator receiver modulated diguanylate cyclase/phosphodiesterase 4253294 4175321 Patl_3542 Pseudoalteromonas atlantica T6c response regulator receiver modulated diguanylate cyclase/phosphodiesterase YP_663098.1 4251522 R 342610 CDS YP_663099.1 109899844 4175322 complement(4253284..4257780) 1 NC_008228.1 PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt Two component regulator propeller Two component regulator three Y; KEGG: cps:CPS_0755 GGDEF domain protein; Hpt sensor hybrid histidine kinase 4257780 4175322 Patl_3543 Pseudoalteromonas atlantica T6c Hpt sensor hybrid histidine kinase YP_663099.1 4253284 R 342610 CDS YP_663100.1 109899845 4175323 complement(4258041..4260176) 1 NC_008228.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: cps:CPS_0754 alkaline serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin 4260176 4175323 Patl_3544 Pseudoalteromonas atlantica T6c peptidase S8/S53 subtilisin kexin sedolisin YP_663100.1 4258041 R 342610 CDS YP_663101.1 109899846 4175324 complement(4260675..4262384) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL response regulator receiver; KEGG: cps:CPS_3950 response regulator/GGDEF domain protein; response regulator receiver modulated diguanylate cyclase/phosphodiesterase 4262384 4175324 Patl_3545 Pseudoalteromonas atlantica T6c response regulator receiver modulated diguanylate cyclase/phosphodiesterase YP_663101.1 4260675 R 342610 CDS YP_663102.1 109899847 4175325 complement(4262437..4263993) 1 NC_008228.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4; KEGG: cps:CPS_3952 sensor histidine kinase; PAS/PAC sensor signal transduction histidine kinase 4263993 4175325 Patl_3546 Pseudoalteromonas atlantica T6c PAS/PAC sensor signal transduction histidine kinase YP_663102.1 4262437 R 342610 CDS YP_663103.1 109899848 4175326 complement(4264023..4264439) 1 NC_008228.1 PFAM: response regulator receiver; KEGG: lic:LIC12088 response regulator; response regulator receiver protein 4264439 4175326 Patl_3547 Pseudoalteromonas atlantica T6c response regulator receiver protein YP_663103.1 4264023 R 342610 CDS YP_663104.1 109899849 4175327 complement(4264442..4265902) 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: noc:Noc_1703 PAS sensor, signal transduction histidine kinase; sensor signal transduction histidine kinase 4265902 4175327 Patl_3548 Pseudoalteromonas atlantica T6c sensor signal transduction histidine kinase YP_663104.1 4264442 R 342610 CDS YP_663105.1 109899850 4175328 4266100..4266270 1 NC_008228.1 KEGG: pha:PSHAa1740 TonB-dependent receptor; TonB-dependent receptor 4266270 4175328 Patl_3549 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_663105.1 4266100 D 342610 CDS YP_663106.1 109899851 4175329 complement(4266405..4269629) 1 NC_008228.1 PFAM: protein of unknown function DUF748; KEGG: son:SO2796 hypothetical protein; hypothetical protein 4269629 4175329 Patl_3550 Pseudoalteromonas atlantica T6c hypothetical protein YP_663106.1 4266405 R 342610 CDS YP_663107.1 109899852 4175330 complement(4269712..4270311) 1 NC_008228.1 KEGG: son:SO4561 hypothetical protein; hypothetical protein 4270311 4175330 Patl_3551 Pseudoalteromonas atlantica T6c hypothetical protein YP_663107.1 4269712 R 342610 CDS YP_663108.1 109899853 4175331 complement(4270741..4271127) 1 NC_008228.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: eli:ELI_11905 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 4271127 4175331 Patl_3552 Pseudoalteromonas atlantica T6c glyoxalase/bleomycin resistance protein/dioxygenase YP_663108.1 4270741 R 342610 CDS YP_663109.1 109899854 4175332 4271250..4271966 1 NC_008228.1 PFAM: Helix-turn-helix, type 11; KEGG: bmb:BruAb1_1719 hypothetical transcriptional regulator; type 11 helix-turn-helix protein 4271966 4175332 Patl_3553 Pseudoalteromonas atlantica T6c type 11 helix-turn-helix protein YP_663109.1 4271250 D 342610 CDS YP_663110.1 109899855 4175333 complement(4272077..4272598) 1 NC_008228.1 hypothetical protein 4272598 4175333 Patl_3554 Pseudoalteromonas atlantica T6c hypothetical protein YP_663110.1 4272077 R 342610 CDS YP_663111.1 109899856 4175334 complement(4272618..4273124) 1 NC_008228.1 KEGG: gox:GOX0247 hypothetical protein; hypothetical protein 4273124 4175334 Patl_3555 Pseudoalteromonas atlantica T6c hypothetical protein YP_663111.1 4272618 R 342610 CDS YP_663112.1 109899857 4175335 complement(4273136..4273696) 1 NC_008228.1 KEGG: cch:Cag_1238 hypothetical protein; hypothetical protein 4273696 4175335 Patl_3556 Pseudoalteromonas atlantica T6c hypothetical protein YP_663112.1 4273136 R 342610 CDS YP_663113.1 109899858 4175336 4274310..4275128 1 NC_008228.1 KEGG: nmu:Nmul_A1721 hypothetical protein; hypothetical protein 4275128 4175336 Patl_3557 Pseudoalteromonas atlantica T6c hypothetical protein YP_663113.1 4274310 D 342610 CDS YP_663114.1 109899859 4175337 4275156..4277927 1 NC_008228.1 KEGG: rpb:RPB_3790 hypothetical protein; hypothetical protein 4277927 4175337 Patl_3558 Pseudoalteromonas atlantica T6c hypothetical protein YP_663114.1 4275156 D 342610 CDS YP_663115.1 109899860 4175339 4278819..4279325 1 NC_008228.1 PFAM: RDD domain containing protein; KEGG: son:SO1371 hypothetical protein; RDD domain-containing protein 4279325 4175339 Patl_3559 Pseudoalteromonas atlantica T6c RDD domain-containing protein YP_663115.1 4278819 D 342610 CDS YP_663116.1 109899861 4175340 complement(4279352..4280413) 1 NC_008228.1 PFAM: permease YjgP/YjgQ; KEGG: ilo:IL1946 predicted permease; permease YjgP/YjgQ 4280413 4175340 Patl_3560 Pseudoalteromonas atlantica T6c permease YjgP/YjgQ YP_663116.1 4279352 R 342610 CDS YP_663117.1 109899862 4175341 complement(4280410..4281516) 1 NC_008228.1 PFAM: permease YjgP/YjgQ; KEGG: ilo:IL1947 predicted permease; permease YjgP/YjgQ 4281516 4175341 Patl_3561 Pseudoalteromonas atlantica T6c permease YjgP/YjgQ YP_663117.1 4280410 R 342610 CDS YP_663118.1 109899863 4175342 4281804..4283309 1 NC_008228.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 4283309 4175342 Patl_3562 Pseudoalteromonas atlantica T6c leucyl aminopeptidase YP_663118.1 4281804 D 342610 CDS YP_663119.1 109899864 4175343 4283336..4283806 1 NC_008228.1 PFAM: DNA polymerase III chi subunit, HolC; KEGG: plu:plu4482 DNA polymerase III, chi subunit; DNA polymerase III chi subunit, HolC 4283806 4175343 Patl_3563 Pseudoalteromonas atlantica T6c DNA polymerase III chi subunit, HolC YP_663119.1 4283336 D 342610 CDS YP_663120.1 109899865 4175344 4283833..4286598 1 NC_008228.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 4286598 valS 4175344 valS Pseudoalteromonas atlantica T6c valyl-tRNA synthetase YP_663120.1 4283833 D 342610 CDS YP_663121.1 109899866 4175345 4286964..4288439 1 NC_008228.1 PFAM: 5'-Nucleotidase-like; KEGG: mag:amb3606 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterase; 5'-nucleotidase 4288439 4175345 Patl_3565 Pseudoalteromonas atlantica T6c 5'-nucleotidase YP_663121.1 4286964 D 342610 CDS YP_663122.1 109899867 4175346 4288432..4290117 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein histidine kinase, HAMP region; KEGG: mag:amb4000 response regulator containing a CheY-like receiver domain and a GGDEF domain; diguanylate cyclase 4290117 4175346 Patl_3566 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_663122.1 4288432 D 342610 CDS YP_663123.1 109899868 4175347 complement(4290160..4290693) 1 NC_008228.1 KEGG: cps:CPS_0968 hypothetical protein; hypothetical protein 4290693 4175347 Patl_3567 Pseudoalteromonas atlantica T6c hypothetical protein YP_663123.1 4290160 R 342610 CDS YP_663124.1 109899869 4175348 complement(4291096..4292466) 1 NC_008228.1 KEGG: son:SO4018 hypothetical protein; hypothetical protein 4292466 4175348 Patl_3568 Pseudoalteromonas atlantica T6c hypothetical protein YP_663124.1 4291096 R 342610 CDS YP_663125.1 109899870 4175349 4292717..4293595 1 NC_008228.1 PFAM: MltA-interacting MipA; KEGG: son:SO3592 putative outer membrane protein; MltA-interacting MipA 4293595 4175349 Patl_3569 Pseudoalteromonas atlantica T6c MltA-interacting MipA YP_663125.1 4292717 D 342610 CDS YP_663126.1 109899871 4175350 4293635..4294015 1 NC_008228.1 hypothetical protein 4294015 4175350 Patl_3570 Pseudoalteromonas atlantica T6c hypothetical protein YP_663126.1 4293635 D 342610 CDS YP_663127.1 109899872 4175351 4294015..4294713 1 NC_008228.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: cps:CPS_3172 DNA-binding response regulator; two component transcriptional regulator 4294713 4175351 Patl_3571 Pseudoalteromonas atlantica T6c two component transcriptional regulator YP_663127.1 4294015 D 342610 CDS YP_663128.1 109899873 4175352 4294723..4295976 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: cps:CPS_3170 sensor histidine kinase; sensor signal transduction histidine kinase 4295976 4175352 Patl_3572 Pseudoalteromonas atlantica T6c sensor signal transduction histidine kinase YP_663128.1 4294723 D 342610 CDS YP_663129.1 109899874 4175353 4296136..4297563 1 NC_008228.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: ilo:IL2573 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 4297563 4175353 Patl_3573 Pseudoalteromonas atlantica T6c 4Fe-4S ferredoxin YP_663129.1 4296136 D 342610 CDS YP_663130.1 109899875 4175354 4297563..4298528 1 NC_008228.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 4298528 4175354 Patl_3574 Pseudoalteromonas atlantica T6c serine/threonine protein kinase YP_663130.1 4297563 D 342610 CDS YP_663131.1 109899876 4175355 4298662..4299285 1 NC_008228.1 PFAM: DSBA oxidoreductase; KEGG: cps:CPS_4348 thiol:disulfide interchange protein DsbA; DSBA oxidoreductase 4299285 4175355 Patl_3575 Pseudoalteromonas atlantica T6c DSBA oxidoreductase YP_663131.1 4298662 D 342610 CDS YP_663132.1 109899877 4175356 4299616..4301070 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: tdn:Tmden_0836 diguanylate cyclase (GGDEF domain); diguanylate cyclase 4301070 4175356 Patl_3576 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_663132.1 4299616 D 342610 CDS YP_663133.1 109899878 4175357 complement(4301054..4301722) 1 NC_008228.1 TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; KEGG: vpa:VP0500 uracil-DNA glycosylase; uracil-DNA glycosylase 4301722 4175357 Patl_3577 Pseudoalteromonas atlantica T6c uracil-DNA glycosylase YP_663133.1 4301054 R 342610 CDS YP_663134.1 109899879 4175358 complement(4301753..4303036) 1 NC_008228.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 4303036 4175358 Patl_3578 Pseudoalteromonas atlantica T6c threonine synthase YP_663134.1 4301753 R 342610 CDS YP_663135.1 109899880 4175359 complement(4303085..4304080) 1 NC_008228.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 4304080 4175359 Patl_3579 Pseudoalteromonas atlantica T6c homoserine kinase YP_663135.1 4303085 R 342610 CDS YP_663136.1 109899881 4175360 complement(4304080..4306542) 1 NC_008228.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 4306542 thrA 4175360 thrA Pseudoalteromonas atlantica T6c bifunctional aspartokinase I/homoserine dehydrogenase I YP_663136.1 4304080 R 342610 CDS YP_663137.1 109899882 4175361 complement(4307236..4308621) 1 NC_008228.1 PFAM: Nucleotidyl transferase; KEGG: son:SO1498 glucose-1-phosphate adenylyltransferase; glucose-1-phosphate adenylyltransferase 4308621 4175361 Patl_3581 Pseudoalteromonas atlantica T6c glucose-1-phosphate adenylyltransferase YP_663137.1 4307236 R 342610 CDS YP_663138.1 109899883 4175362 complement(4308709..4309209) 1 NC_008228.1 PFAM: heat shock protein Hsp20; KEGG: bja:blr7961 probable HspC2 heat shock protein; heat shock protein Hsp20 4309209 4175362 Patl_3582 Pseudoalteromonas atlantica T6c heat shock protein Hsp20 YP_663138.1 4308709 R 342610 CDS YP_663139.1 109899884 4175363 4309943..4311136 1 NC_008228.1 PFAM: GAF ATP-binding region, ATPase-like histidine kinase A-like; KEGG: psb:Psyr_3773 GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal; GAF sensor signal transduction histidine kinase 4311136 4175363 Patl_3583 Pseudoalteromonas atlantica T6c GAF sensor signal transduction histidine kinase YP_663139.1 4309943 D 342610 CDS YP_663140.1 109899885 4175364 4312079..4313320 1 NC_008228.1 PFAM: Radical SAM; KEGG: xcb:XC_3736 hypothetical protein; radical SAM family protein 4313320 4175364 Patl_3584 Pseudoalteromonas atlantica T6c radical SAM family protein YP_663140.1 4312079 D 342610 CDS YP_663141.1 109899886 4175365 4313337..4314131 1 NC_008228.1 KEGG: rba:RB3915 putative DNA polymerase related protein; putative DNA polymerase-like protein 4314131 4175365 Patl_3585 Pseudoalteromonas atlantica T6c putative DNA polymerase-like protein YP_663141.1 4313337 D 342610 CDS YP_663142.1 109899887 4175366 complement(4314183..4314929) 1 NC_008228.1 hypothetical protein 4314929 4175366 Patl_3586 Pseudoalteromonas atlantica T6c hypothetical protein YP_663142.1 4314183 R 342610 CDS YP_663143.1 109899888 4175367 complement(4315354..4316658) 1 NC_008228.1 hypothetical protein 4316658 4175367 Patl_3587 Pseudoalteromonas atlantica T6c hypothetical protein YP_663143.1 4315354 R 342610 CDS YP_663144.1 109899889 4175368 4317862..4318146 1 NC_008228.1 hypothetical protein 4318146 4175368 Patl_3588 Pseudoalteromonas atlantica T6c hypothetical protein YP_663144.1 4317862 D 342610 CDS YP_663145.1 109899890 4175369 4318553..4320739 1 NC_008228.1 KEGG: hpy:HP1520 hypothetical protein; hypothetical protein 4320739 4175369 Patl_3589 Pseudoalteromonas atlantica T6c hypothetical protein YP_663145.1 4318553 D 342610 CDS YP_663146.1 109899891 4175370 complement(4321406..4324315) 1 NC_008228.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 4324315 4175370 Patl_3590 Pseudoalteromonas atlantica T6c glycine dehydrogenase YP_663146.1 4321406 R 342610 CDS YP_663147.1 109899892 4175371 complement(4324520..4324909) 1 NC_008228.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 4324909 4175371 Patl_3591 Pseudoalteromonas atlantica T6c glycine cleavage system protein H YP_663147.1 4324520 R 342610 CDS YP_663148.1 109899893 4175372 complement(4324982..4326061) 1 NC_008228.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 4326061 gcvT 4175372 gcvT Pseudoalteromonas atlantica T6c glycine cleavage system aminomethyltransferase T YP_663148.1 4324982 R 342610 CDS YP_663149.1 109899894 4175373 4326203..4327054 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pha:PSHAa2477 bacterial regulatory protein; LysR family transcriptional regulator 4327054 4175373 Patl_3593 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_663149.1 4326203 D 342610 CDS YP_663150.1 109899895 4175374 complement(4327750..4328823) 1 NC_008228.1 KEGG: cps:CPS_5029 putative general secretion pathway protein A; putative general secretion pathway protein A 4328823 4175374 Patl_3594 Pseudoalteromonas atlantica T6c putative general secretion pathway protein A YP_663150.1 4327750 R 342610 CDS YP_663151.1 109899896 4175375 complement(4329049..4329699) 1 NC_008228.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III related proteins; KEGG: vvu:VV11043 hemolysin; hemolysin III family channel protein 4329699 4175375 Patl_3595 Pseudoalteromonas atlantica T6c hemolysin III family channel protein YP_663151.1 4329049 R 342610 CDS YP_663152.1 109899897 4175376 complement(4329783..4330649) 1 NC_008228.1 KEGG: noc:Noc_0660 hypothetical protein; hypothetical protein 4330649 4175376 Patl_3596 Pseudoalteromonas atlantica T6c hypothetical protein YP_663152.1 4329783 R 342610 CDS YP_663153.1 109899898 4175377 complement(4330795..4334001) 1 NC_008228.1 PFAM: acriflavin resistance protein; KEGG: hch:HCH_04131 cation/multidrug efflux pump; acriflavin resistance protein 4334001 4175377 Patl_3597 Pseudoalteromonas atlantica T6c acriflavin resistance protein YP_663153.1 4330795 R 342610 CDS YP_663154.1 109899899 4175378 complement(4333998..4335239) 1 NC_008228.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: hch:HCH_04132 membrane-fusion protein; RND family efflux transporter MFP subunit 4335239 4175378 Patl_3598 Pseudoalteromonas atlantica T6c RND family efflux transporter MFP subunit YP_663154.1 4333998 R 342610 CDS YP_663155.1 109899900 4175379 complement(4335236..4336594) 1 NC_008228.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: hch:HCH_04133 outer membrane protein; RND efflux system outer membrane lipoprotein 4336594 4175379 Patl_3599 Pseudoalteromonas atlantica T6c RND efflux system outer membrane lipoprotein YP_663155.1 4335236 R 342610 CDS YP_663156.1 109899901 4175380 4336676..4337155 1 NC_008228.1 PFAM: Excinuclease ABC, C subunit-like; KEGG: son:SO0145 hypothetical URI domain endonuclease; excinuclease ABC subunit C 4337155 4175380 Patl_3600 Pseudoalteromonas atlantica T6c excinuclease ABC subunit C YP_663156.1 4336676 D 342610 CDS YP_663157.1 109899902 4175381 4337214..4340114 1 NC_008228.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 4340114 4175381 Patl_3601 Pseudoalteromonas atlantica T6c bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_663157.1 4337214 D 342610 CDS YP_663158.1 109899903 4175382 complement(4340125..4340742) 1 NC_008228.1 KEGG: pha:PSHAa2594 hypothetical protein; hypothetical protein 4340742 4175382 Patl_3602 Pseudoalteromonas atlantica T6c hypothetical protein YP_663158.1 4340125 R 342610 CDS YP_663159.1 109899904 4175383 complement(4340833..4341765) 1 NC_008228.1 TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: cps:CPS_4183 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 4341765 4175383 Patl_3603 Pseudoalteromonas atlantica T6c lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YP_663159.1 4340833 R 342610 CDS YP_663160.1 109899905 4175384 4342028..4345546 1 NC_008228.1 KEGG: hch:HCH_00794 FOG: PAS/PAC domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; PAS/PAC sensor hybrid histidine kinase 4345546 4175384 Patl_3604 Pseudoalteromonas atlantica T6c PAS/PAC sensor hybrid histidine kinase YP_663160.1 4342028 D 342610 CDS YP_663161.1 109899906 4175385 complement(4345570..4345827) 1 NC_008228.1 KEGG: pha:PSHAb0423 hypothetical protein; hypothetical protein 4345827 4175385 Patl_3605 Pseudoalteromonas atlantica T6c hypothetical protein YP_663161.1 4345570 R 342610 CDS YP_663162.1 109899907 4175386 complement(4346165..4347424) 1 NC_008228.1 PFAM: beta-lactamase; KEGG: ccr:CC1568 hypothetical protein; beta-lactamase 4347424 4175386 Patl_3606 Pseudoalteromonas atlantica T6c beta-lactamase YP_663162.1 4346165 R 342610 CDS YP_663163.1 109899908 4175387 complement(4347602..4347832) 1 NC_008228.1 PFAM: ChaB; KEGG: nmu:Nmul_A2443 ChaB; ChaB protein 4347832 4175387 Patl_3607 Pseudoalteromonas atlantica T6c ChaB protein YP_663163.1 4347602 R 342610 CDS YP_663164.1 109899909 4175388 complement(4348039..4348983) 1 NC_008228.1 PFAM: protein of unknown function DUF808; KEGG: pfo:Pfl_1601 protein of unknown function DUF808; hypothetical protein 4348983 4175388 Patl_3608 Pseudoalteromonas atlantica T6c hypothetical protein YP_663164.1 4348039 R 342610 CDS YP_663165.1 109899910 4175389 complement(4349036..4349803) 1 NC_008228.1 PFAM: protein of unknown function DUF610, YibQ; KEGG: son:SO0046 hypothetical protein; hypothetical protein 4349803 4175389 Patl_3609 Pseudoalteromonas atlantica T6c hypothetical protein YP_663165.1 4349036 R 342610 CDS YP_663166.1 109899911 4175390 complement(4349820..4350911) 1 NC_008228.1 PFAM: peptidase M23B; KEGG: pha:PSHAa0365 protease; peptidase M23B 4350911 4175390 Patl_3610 Pseudoalteromonas atlantica T6c peptidase M23B YP_663166.1 4349820 R 342610 CDS YP_663167.1 109899912 4175391 complement(4350974..4352509) 1 NC_008228.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 4352509 4175391 Patl_3611 Pseudoalteromonas atlantica T6c phosphoglyceromutase YP_663167.1 4350974 R 342610 CDS YP_663168.1 109899913 4175392 4352780..4353205 1 NC_008228.1 PFAM: Rhodanese-like; KEGG: cps:CPS_4390 rhodanese domain protein; rhodanese-like protein 4353205 4175392 Patl_3612 Pseudoalteromonas atlantica T6c rhodanese-like protein YP_663168.1 4352780 D 342610 CDS YP_663169.1 109899914 4175393 4353224..4353481 1 NC_008228.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: pha:PSHAa0368 glutaredoxin; glutaredoxin 3 4353481 4175393 Patl_3613 Pseudoalteromonas atlantica T6c glutaredoxin 3 YP_663169.1 4353224 D 342610 CDS YP_663170.1 109899915 4175394 4353504..4354013 1 NC_008228.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 4354013 4175394 Patl_3614 Pseudoalteromonas atlantica T6c preprotein translocase subunit SecB YP_663170.1 4353504 D 342610 CDS YP_663171.1 109899916 4175395 4354025..4355023 1 NC_008228.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase-like Ketopantoate reductase ApbA/PanE-like; KEGG: pha:PSHAa0370 glycerol-3-phosphate dehydrogenase (NAD+); glycerol-3-phosphate dehydrogenase (NAD(P)+) 4355023 4175395 Patl_3615 Pseudoalteromonas atlantica T6c glycerol-3-phosphate dehydrogenase (NAD(P)+) YP_663171.1 4354025 D 342610 CDS YP_663172.1 109899917 4175396 complement(4355160..4355603) 1 NC_008228.1 PFAM: YiaAB two helix; KEGG: xoo:XOO4114 membrane protein; hypothetical protein 4355603 4175396 Patl_3616 Pseudoalteromonas atlantica T6c hypothetical protein YP_663172.1 4355160 R 342610 CDS YP_663173.1 109899918 4175397 complement(4355808..4356665) 1 NC_008228.1 KEGG: hch:HCH_01598 hypothetical protein; hypothetical protein 4356665 4175397 Patl_3617 Pseudoalteromonas atlantica T6c hypothetical protein YP_663173.1 4355808 R 342610 CDS YP_663174.1 109899919 4175398 complement(4356665..4356898) 1 NC_008228.1 hypothetical protein 4356898 4175398 Patl_3618 Pseudoalteromonas atlantica T6c hypothetical protein YP_663174.1 4356665 R 342610 CDS YP_663175.1 109899920 4175399 4357223..4357990 1 NC_008228.1 SMART: Helix-turn-helix type 3; KEGG: hch:HCH_00179 protein containing HTH domain; XRE family transcriptional regulator 4357990 4175399 Patl_3619 Pseudoalteromonas atlantica T6c XRE family transcriptional regulator YP_663175.1 4357223 D 342610 CDS YP_663176.1 109899921 4175400 complement(4358103..4358876) 1 NC_008228.1 PFAM: protein of unknown function DUF328; KEGG: vpa:VP0504 hypothetical protein; hypothetical protein 4358876 4175400 Patl_3620 Pseudoalteromonas atlantica T6c hypothetical protein YP_663176.1 4358103 R 342610 CDS YP_663177.1 109899922 4175401 complement(4359099..4359596) 1 NC_008228.1 hypothetical protein 4359596 4175401 Patl_3621 Pseudoalteromonas atlantica T6c hypothetical protein YP_663177.1 4359099 R 342610 CDS YP_663178.1 109899923 4175402 4359823..4360776 1 NC_008228.1 KEGG: son:SO3546 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B 4360776 4175402 Patl_3622 Pseudoalteromonas atlantica T6c transaldolase B YP_663178.1 4359823 D 342610 CDS YP_663179.1 109899924 4175403 4360858..4362501 1 NC_008228.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 4362501 pgi 4175403 pgi Pseudoalteromonas atlantica T6c glucose-6-phosphate isomerase YP_663179.1 4360858 D 342610 CDS YP_663180.1 109899925 4175404 complement(4362600..4363691) 1 NC_008228.1 KEGG: pha:PSHAb0037 hypothetical protein; hypothetical protein 4363691 4175404 Patl_3624 Pseudoalteromonas atlantica T6c hypothetical protein YP_663180.1 4362600 R 342610 CDS YP_663181.1 109899926 4175405 complement(4363701..4364765) 1 NC_008228.1 PFAM: secretion protein HlyD; KEGG: pae:PA3360 probable secretion protein; secretion protein HlyD 4364765 4175405 Patl_3625 Pseudoalteromonas atlantica T6c secretion protein HlyD YP_663181.1 4363701 R 342610 CDS YP_663182.1 109899927 4175406 complement(4364768..4365250) 1 NC_008228.1 PFAM: regulatory protein, MarR; KEGG: pha:PSHAb0035 putative transcriptional regulator (MarR family); MarR family transcriptional regulator 4365250 4175406 Patl_3626 Pseudoalteromonas atlantica T6c MarR family transcriptional regulator YP_663182.1 4364768 R 342610 CDS YP_663183.1 109899928 4175407 4365763..4367997 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_4488 TonB-dependent receptor; TonB-dependent receptor 4367997 4175407 Patl_3627 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_663183.1 4365763 D 342610 CDS YP_663184.1 109899929 4175408 complement(4368142..4369269) 1 NC_008228.1 PFAM: aminotransferase, class I and II; KEGG: pca:Pcar_3031 putative aminotransferase; class I and II aminotransferase 4369269 4175408 Patl_3628 Pseudoalteromonas atlantica T6c class I and II aminotransferase YP_663184.1 4368142 R 342610 CDS YP_663185.1 109899930 4175409 complement(4369289..4369678) 1 NC_008228.1 PFAM: response regulator receiver; KEGG: ppu:PP5324 response regulator; response regulator receiver protein 4369678 4175409 Patl_3629 Pseudoalteromonas atlantica T6c response regulator receiver protein YP_663185.1 4369289 R 342610 CDS YP_663186.1 109899931 4175410 complement(4369732..4372092) 1 NC_008228.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 4372092 4175410 Patl_3630 Pseudoalteromonas atlantica T6c DNA polymerase II YP_663186.1 4369732 R 342610 CDS YP_663187.1 109899932 4175411 complement(4372109..4373995) 1 NC_008228.1 KEGG: bba:Bd3766 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; diguanylate cyclase 4373995 4175411 Patl_3631 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_663187.1 4372109 R 342610 CDS YP_663188.1 109899933 4175412 complement(4374453..4374848) 1 NC_008228.1 KEGG: son:SO3645 hypothetical protein; hypothetical protein 4374848 4175412 Patl_3632 Pseudoalteromonas atlantica T6c hypothetical protein YP_663188.1 4374453 R 342610 CDS YP_663189.1 109899934 4175413 4375084..4376163 1 NC_008228.1 PFAM: Semialdehyde dehydrogenase, NAD - binding oxidoreductase-like; KEGG: hch:HCH_02553 predicted dehydrogenase and related protein; oxidoreductase-like protein 4376163 4175413 Patl_3633 Pseudoalteromonas atlantica T6c oxidoreductase-like protein YP_663189.1 4375084 D 342610 CDS YP_663190.1 109899935 4175414 complement(4376168..4377172) 1 NC_008228.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 4377172 rbgA 4175414 rbgA Pseudoalteromonas atlantica T6c ribosomal biogenesis GTPase YP_663190.1 4376168 R 342610 CDS YP_663191.1 109899936 4175415 4377530..4379785 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2119 TonB-dependent receptor; TonB-dependent receptor, plug 4379785 4175415 Patl_3635 Pseudoalteromonas atlantica T6c TonB-dependent receptor, plug YP_663191.1 4377530 D 342610 CDS YP_663192.1 109899937 4175416 4379994..4380395 1 NC_008228.1 hypothetical protein 4380395 4175416 Patl_3636 Pseudoalteromonas atlantica T6c hypothetical protein YP_663192.1 4379994 D 342610 CDS YP_663193.1 109899938 4175417 4380469..4381527 1 NC_008228.1 KEGG: rba:RB356 hypothetical protein; hypothetical protein 4381527 4175417 Patl_3637 Pseudoalteromonas atlantica T6c hypothetical protein YP_663193.1 4380469 D 342610 CDS YP_663194.1 109899939 4175418 4382227..4385208 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2457 TonB-dependent receptor; TonB-dependent receptor 4385208 4175418 Patl_3638 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_663194.1 4382227 D 342610 CDS YP_663195.1 109899940 4175419 4385393..4386520 1 NC_008228.1 KEGG: pha:PSHAa0571 alginate lyase; poly(beta-D-mannuronate) lyase 4386520 4175419 Patl_3639 Pseudoalteromonas atlantica T6c poly(beta-D-mannuronate) lyase YP_663195.1 4385393 D 342610 CDS YP_663196.1 109899941 4175420 4386604..4388874 1 NC_008228.1 KEGG: pha:PSHAa1749 alginate lyase precursor; poly(beta-D-mannuronate) lyase 4388874 4175420 Patl_3640 Pseudoalteromonas atlantica T6c poly(beta-D-mannuronate) lyase YP_663196.1 4386604 D 342610 CDS YP_663197.1 109899942 4175421 4389008..4389769 1 NC_008228.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mta:Moth_0426 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 4389769 4175421 Patl_3641 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_663197.1 4389008 D 342610 CDS YP_663198.1 109899943 4175422 4389803..4390237 1 NC_008228.1 PFAM: RbsD or FucU transport; KEGG: rba:RB3237 fucose operon fucU protein; transporter 4390237 4175422 Patl_3642 Pseudoalteromonas atlantica T6c transporter YP_663198.1 4389803 D 342610 CDS YP_663199.1 109899944 4175423 4390339..4391577 1 NC_008228.1 PFAM: natural resistance-associated macrophage protein; KEGG: ssp:SSP2176 putative Mn2+ Fe2+ transporter; natural resistance-associated macrophage protein 4391577 4175423 Patl_3643 Pseudoalteromonas atlantica T6c natural resistance-associated macrophage protein YP_663199.1 4390339 D 342610 CDS YP_663200.1 109899945 4175424 4391600..4392088 1 NC_008228.1 TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: ana:alr3086 gluconokinase; carbohydrate kinase 4392088 4175424 Patl_3644 Pseudoalteromonas atlantica T6c carbohydrate kinase YP_663200.1 4391600 D 342610 CDS YP_663201.1 109899946 4175425 4392160..4393233 1 NC_008228.1 KEGG: pha:PSHAa0571 alginate lyase; alginate lyase 4393233 4175425 Patl_3645 Pseudoalteromonas atlantica T6c alginate lyase YP_663201.1 4392160 D 342610 CDS YP_663202.1 109899947 4175426 complement(4393404..4394525) 1 NC_008228.1 KEGG: tte:TTE1751 phosphomannose isomerase; phosphomannose isomerase-like protein 4394525 4175426 Patl_3646 Pseudoalteromonas atlantica T6c phosphomannose isomerase-like protein YP_663202.1 4393404 R 342610 CDS YP_663203.1 109899948 4175427 complement(4394633..4395889) 1 NC_008228.1 PFAM: natural resistance-associated macrophage protein; KEGG: ssp:SSP2176 putative Mn2+ Fe2+ transporter; natural resistance-associated macrophage protein 4395889 4175427 Patl_3647 Pseudoalteromonas atlantica T6c natural resistance-associated macrophage protein YP_663203.1 4394633 R 342610 CDS YP_663204.1 109899949 4175428 complement(4396010..4397209) 1 NC_008228.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 4397209 4175428 Patl_3648 Pseudoalteromonas atlantica T6c mannonate dehydratase YP_663204.1 4396010 R 342610 CDS YP_663205.1 109899950 4175429 complement(4397252..4398709) 1 NC_008228.1 PFAM: Mannitol dehydrogenase-like Mannitol dehydrogenase rossman-like; KEGG: xac:XAC4232 mannitol dehydrogenase; mannitol dehydrogenase Rossman-like protein 4398709 4175429 Patl_3649 Pseudoalteromonas atlantica T6c mannitol dehydrogenase Rossman-like protein YP_663205.1 4397252 R 342610 CDS YP_663206.1 109899951 4175430 4399376..4402414 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3737 TonB-dependent receptor; TonB-dependent receptor 4402414 4175430 Patl_3650 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_663206.1 4399376 D 342610 CDS YP_663207.1 109899952 4175431 4402691..4404937 1 NC_008228.1 PFAM: Heparinase II/III-like; KEGG: pha:PSHAa1748 chondroitin AC/alginate lyase; heparinase II/III-like protein 4404937 4175431 Patl_3651 Pseudoalteromonas atlantica T6c heparinase II/III-like protein YP_663207.1 4402691 D 342610 CDS YP_663208.1 109899953 4175432 complement(4405076..4406230) 1 NC_008228.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ilo:IL2587 cation efflux system component; cation diffusion facilitator family transporter 4406230 4175432 Patl_3652 Pseudoalteromonas atlantica T6c cation diffusion facilitator family transporter YP_663208.1 4405076 R 342610 CDS YP_663209.1 109899954 4175433 4406248..4406658 1 NC_008228.1 hypothetical protein 4406658 4175433 Patl_3653 Pseudoalteromonas atlantica T6c hypothetical protein YP_663209.1 4406248 D 342610 CDS YP_663210.1 109899955 4175434 complement(4406812..4408197) 1 NC_008228.1 PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: rba:RB12290 NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunit beta 4408197 4175434 Patl_3654 Pseudoalteromonas atlantica T6c NAD(P) transhydrogenase subunit beta YP_663210.1 4406812 R 342610 CDS YP_663211.1 109899956 4175435 complement(4408210..4408491) 1 NC_008228.1 KEGG: rba:RB12291 probable NAD(P) transhydrogenase subunit alpha; putative NAD(P) transhydrogenase subunit alpha 4408491 4175435 Patl_3655 Pseudoalteromonas atlantica T6c putative NAD(P) transhydrogenase subunit alpha YP_663211.1 4408210 R 342610 CDS YP_663212.1 109899957 4175436 complement(4408491..4409660) 1 NC_008228.1 PFAM: alanine dehydrogenase/PNT-like; KEGG: rba:RB12292 NAD(P) transhydrogenase subunit alpha; alanine dehydrogenase/PNT-like protein 4409660 4175436 Patl_3656 Pseudoalteromonas atlantica T6c alanine dehydrogenase/PNT-like protein YP_663212.1 4408491 R 342610 CDS YP_663213.1 109899958 4175437 complement(4409816..4410739) 1 NC_008228.1 PFAM: PfkB; KEGG: pha:PSHAa1745 ketodeoxygluconokinase; PfkB protein 4410739 4175437 Patl_3657 Pseudoalteromonas atlantica T6c PfkB protein YP_663213.1 4409816 R 342610 CDS YP_663214.1 109899959 4175438 complement(4410804..4412102) 1 NC_008228.1 PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa1746 putative hexuronate transport protein (MFS family); major facilitator superfamily transporter 4412102 4175438 Patl_3658 Pseudoalteromonas atlantica T6c major facilitator superfamily transporter YP_663214.1 4410804 R 342610 CDS YP_663215.1 109899960 4175439 complement(4412160..4414424) 1 NC_008228.1 KEGG: pha:PSHAa1749 alginate lyase precursor; poly(beta-D-mannuronate) lyase 4414424 4175439 Patl_3659 Pseudoalteromonas atlantica T6c poly(beta-D-mannuronate) lyase YP_663215.1 4412160 R 342610 CDS YP_663216.1 109899961 4175440 4414948..4415685 1 NC_008228.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: pha:PSHAa1739 regulatory protein, GntR; GntR family transcriptional regulator 4415685 4175440 Patl_3660 Pseudoalteromonas atlantica T6c GntR family transcriptional regulator YP_663216.1 4414948 D 342610 CDS YP_663217.1 109899962 4175441 complement(4415783..4416529) 1 NC_008228.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: atc:AGR_L_3556 hypothetical protein; short-chain dehydrogenase/reductase SDR 4416529 4175441 Patl_3661 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_663217.1 4415783 R 342610 CDS YP_663218.1 109899963 4175442 complement(4416901..4418088) 1 NC_008228.1 PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: bbr:BB2778 putative monooxygenase; monooxygenase 4418088 4175442 Patl_3662 Pseudoalteromonas atlantica T6c monooxygenase YP_663218.1 4416901 R 342610 CDS YP_663219.1 109899964 4175443 complement(4418284..4420452) 1 NC_008228.1 PFAM: protein of unknown function DUF323 Methyltransferase type 11 Methyltransferase type 12; KEGG: son:SO4465 hypothetical protein; hypothetical protein 4420452 4175443 Patl_3663 Pseudoalteromonas atlantica T6c hypothetical protein YP_663219.1 4418284 R 342610 CDS YP_663220.1 109899965 4175444 complement(4420470..4421597) 1 NC_008228.1 KEGG: cps:CPS_0604 hypothetical protein; hypothetical protein 4421597 4175444 Patl_3664 Pseudoalteromonas atlantica T6c hypothetical protein YP_663220.1 4420470 R 342610 CDS YP_663221.1 109899966 4175445 complement(4421790..4422779) 1 NC_008228.1 PFAM: Mg2+ transporter protein, CorA-like; KEGG: tcx:Tcr_0935 Mg2+ transporter protein, CorA-like; CorA-like Mg2+ transporter protein 4422779 4175445 Patl_3665 Pseudoalteromonas atlantica T6c CorA-like Mg2+ transporter protein YP_663221.1 4421790 R 342610 CDS YP_663222.1 109899967 4175446 4423032..4423937 1 NC_008228.1 TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201 RimK-like ATP-grasp; KEGG: vpa:VPA0173 ribosomal protein S6 modification protein; alpha-L-glutamate ligase 4423937 4175446 Patl_3666 Pseudoalteromonas atlantica T6c alpha-L-glutamate ligase YP_663222.1 4423032 D 342610 CDS YP_663223.1 109899968 4175447 4424009..4424458 1 NC_008228.1 PFAM: protein of unknown function DUF785; KEGG: vpa:VPA0172 hypothetical protein; hypothetical protein 4424458 4175447 Patl_3667 Pseudoalteromonas atlantica T6c hypothetical protein YP_663223.1 4424009 D 342610 CDS YP_663224.1 109899969 4175448 4424721..4425263 1 NC_008228.1 KEGG: pha:PSHAb0144 conserved protein of unknown function ; putative secreted protein; hypothetical protein 4425263 4175448 Patl_3668 Pseudoalteromonas atlantica T6c hypothetical protein YP_663224.1 4424721 D 342610 CDS YP_663225.1 109899970 4175449 complement(4425328..4426230) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein response regulator receiver; KEGG: cvi:CV3504 probable two-component response regulator; diguanylate cyclase 4426230 4175449 Patl_3669 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_663225.1 4425328 R 342610 CDS YP_663226.1 109899971 4175450 4426818..4427411 1 NC_008228.1 PFAM: regulatory protein, TetR; KEGG: vfi:VF1081 transcriptional regulator, TetR family; TetR family transcriptional regulator 4427411 4175450 Patl_3670 Pseudoalteromonas atlantica T6c TetR family transcriptional regulator YP_663226.1 4426818 D 342610 CDS YP_663227.1 109899972 4175451 4427713..4428546 1 NC_008228.1 PFAM: MscS Mechanosensitive ion channel; KEGG: hch:HCH_00764 small-conductance mechanosensitive channel; mechanosensitive ion channel protein MscS 4428546 4175451 Patl_3671 Pseudoalteromonas atlantica T6c mechanosensitive ion channel protein MscS YP_663227.1 4427713 D 342610 CDS YP_663228.1 109899973 4175452 complement(4428761..4429906) 1 NC_008228.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: pha:PSHAa0574 alcohol dehydrogenase with dehydroquinate synthase-like domain; iron-containing alcohol dehydrogenase 4429906 4175452 Patl_3672 Pseudoalteromonas atlantica T6c iron-containing alcohol dehydrogenase YP_663228.1 4428761 R 342610 CDS YP_663229.1 109899974 4175453 4430094..4430984 1 NC_008228.1 PFAM: helix-turn-helix, AraC type AraC-type transcriptional regulator-like; KEGG: pha:PSHAa0573 transcriptional regulator; AraC family transcriptional regulator 4430984 4175453 Patl_3673 Pseudoalteromonas atlantica T6c AraC family transcriptional regulator YP_663229.1 4430094 D 342610 CDS YP_663230.1 109899975 4175454 complement(4430970..4432727) 1 NC_008228.1 PFAM: glycosyl transferase, family 39; KEGG: son:SO4690 hypothetical protein; glycosyl transferase family protein 4432727 4175454 Patl_3674 Pseudoalteromonas atlantica T6c glycosyl transferase family protein YP_663230.1 4430970 R 342610 CDS YP_663231.1 109899976 4175455 complement(4432752..4433471) 1 NC_008228.1 KEGG: mag:amb4206 hypothetical protein; hypothetical protein 4433471 4175455 Patl_3675 Pseudoalteromonas atlantica T6c hypothetical protein YP_663231.1 4432752 R 342610 CDS YP_663232.1 109899977 4175456 complement(4433475..4434191) 1 NC_008228.1 PFAM: glycosyl transferase, family 2; KEGG: son:SO4688 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 4434191 4175456 Patl_3676 Pseudoalteromonas atlantica T6c glycosyl transferase family protein YP_663232.1 4433475 R 342610 CDS YP_663233.1 109899978 4175457 complement(4434361..4435308) 1 NC_008228.1 PFAM: response regulator receiver; KEGG: mac:MA3068 chemotaxis response regulator; response regulator receiver protein 4435308 4175457 Patl_3677 Pseudoalteromonas atlantica T6c response regulator receiver protein YP_663233.1 4434361 R 342610 CDS YP_663234.1 109899979 4175458 complement(4435550..4437838) 1 NC_008228.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: gox:GOX0587 membrane-bound aldehyde dehydrogenase, large subunit; aldehyde oxidase and xanthine dehydrogenase 4437838 4175458 Patl_3678 Pseudoalteromonas atlantica T6c aldehyde oxidase and xanthine dehydrogenase YP_663234.1 4435550 R 342610 CDS YP_663235.1 109899980 4175459 complement(4437840..4438337) 1 NC_008228.1 PFAM: ferredoxin [2Fe-2S]-binding; KEGG: bja:blr0840 putative aldehyde dehydrogenase subunit III; (2Fe-2S)-binding protein 4438337 4175459 Patl_3679 Pseudoalteromonas atlantica T6c (2Fe-2S)-binding protein YP_663235.1 4437840 R 342610 CDS YP_663236.1 109899981 4175460 complement(4438651..4439499) 1 NC_008228.1 YghU; B2989; one of eight putative glutathione transferase proteins from E. coli; putative glutathione S-transferase YghU 4439499 4175460 Patl_3680 Pseudoalteromonas atlantica T6c putative glutathione S-transferase YghU YP_663236.1 4438651 R 342610 CDS YP_663237.1 109899982 4175461 complement(4439677..4440453) 1 NC_008228.1 PFAM: SapC; KEGG: cps:CPS_0151 hypothetical protein; protein SapC protein 4440453 4175461 Patl_3681 Pseudoalteromonas atlantica T6c protein SapC protein YP_663237.1 4439677 R 342610 CDS YP_663238.1 109899983 4175462 complement(4440756..4442396) 1 NC_008228.1 PFAM: FAD dependent oxidoreductase; KEGG: pha:PSHAb0547 putative oxygen-dependent membrane associated glycerol-3-phosphate dehydrogenase; FAD dependent oxidoreductase 4442396 4175462 Patl_3682 Pseudoalteromonas atlantica T6c FAD dependent oxidoreductase YP_663238.1 4440756 R 342610 CDS YP_663239.1 109899984 4175463 complement(4442429..4443889) 1 NC_008228.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: eli:ELI_03520 putative sodium/myo-inositol cotransporter; SSS family solute/sodium (Na+) symporter 4443889 4175463 Patl_3683 Pseudoalteromonas atlantica T6c SSS family solute/sodium (Na+) symporter YP_663239.1 4442429 R 342610 CDS YP_663240.1 109899985 4175464 complement(4444001..4444765) 1 NC_008228.1 KEGG: cps:CPS_0240 hypothetical protein; hypothetical protein 4444765 4175464 Patl_3684 Pseudoalteromonas atlantica T6c hypothetical protein YP_663240.1 4444001 R 342610 CDS YP_663241.1 109899986 4175465 complement(4444768..4446351) 1 NC_008228.1 PFAM: tryptophan halogenase; KEGG: cps:CPS_0239 putative tryptophan halogenase; tryptophan halogenase 4446351 4175465 Patl_3685 Pseudoalteromonas atlantica T6c tryptophan halogenase YP_663241.1 4444768 R 342610 CDS YP_663242.1 109899987 4175466 complement(4446550..4449309) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0238 TonB-dependent receptor; TonB-dependent receptor 4449309 4175466 Patl_3686 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_663242.1 4446550 R 342610 CDS YP_663243.1 109899988 4175467 4449848..4452004 1 NC_008228.1 PFAM: glycoside hydrolase, clan GH-D; KEGG: eli:ELI_03515 alpha-galactosidase; glycoside hydrolase 4452004 4175467 Patl_3687 Pseudoalteromonas atlantica T6c glycoside hydrolase YP_663243.1 4449848 D 342610 CDS YP_663244.1 109899989 4175468 4452315..4453514 1 NC_008228.1 PFAM: peptidase M19, renal dipeptidase; KEGG: pha:PSHAa2910 periplasmic dipeptidase; membrane dipeptidase 4453514 4175468 Patl_3688 Pseudoalteromonas atlantica T6c membrane dipeptidase YP_663244.1 4452315 D 342610 CDS YP_663245.1 109899990 4175469 complement(4453618..4454910) 1 NC_008228.1 PFAM: Platelet-activating factor acetylhydrolase, plasma/intracellular isoform II; KEGG: syf:Synpcc7942_0391 hypothetical protein; platelet-activating factor acetylhydrolase, plasma/intracellular isoform II 4454910 4175469 Patl_3689 Pseudoalteromonas atlantica T6c platelet-activating factor acetylhydrolase, plasma/intracellular isoform II YP_663245.1 4453618 R 342610 CDS YP_663246.1 109899991 4175470 complement(4455022..4455675) 1 NC_008228.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: cps:CPS_4923 oxidoreductase, 2OG-Fe(II) oxygenase family; 2OG-Fe(II) oxygenase 4455675 4175470 Patl_3690 Pseudoalteromonas atlantica T6c 2OG-Fe(II) oxygenase YP_663246.1 4455022 R 342610 CDS YP_663247.1 109899992 4175471 complement(4455751..4456248) 1 NC_008228.1 KEGG: dar:Daro_4065 hypothetical protein; hypothetical protein 4456248 4175471 Patl_3691 Pseudoalteromonas atlantica T6c hypothetical protein YP_663247.1 4455751 R 342610 CDS YP_663248.1 109899993 4175472 complement(4456317..4457162) 1 NC_008228.1 TIGRFAM: Protein of unknown function UPF0011; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ppr:PBPRA3226 putative methyltransferase; hypothetical protein 4457162 4175472 Patl_3692 Pseudoalteromonas atlantica T6c hypothetical protein YP_663248.1 4456317 R 342610 CDS YP_663249.1 109899994 4175473 4457315..4459291 1 NC_008228.1 PFAM: LppC putative lipoprotein; KEGG: cps:CPS_4432 conserved hypothetical protein; LppC putative lipoprotein 4459291 4175473 Patl_3693 Pseudoalteromonas atlantica T6c LppC putative lipoprotein YP_663249.1 4457315 D 342610 CDS YP_663250.1 109899995 4175474 4459308..4459652 1 NC_008228.1 PFAM: protein of unknown function UPF0102; KEGG: lpn:lpg2994 predicted endonuclease; hypothetical protein 4459652 4175474 Patl_3694 Pseudoalteromonas atlantica T6c hypothetical protein YP_663250.1 4459308 D 342610 CDS YP_663251.1 109899996 4175475 4459676..4460269 1 NC_008228.1 TIGRFAM: phosphoheptose isomerase; KEGG: son:SO0298 phosphoheptose isomerase; phosphoheptose isomerase 4460269 4175475 Patl_3695 Pseudoalteromonas atlantica T6c phosphoheptose isomerase YP_663251.1 4459676 D 342610 CDS YP_663252.1 109899997 4175476 4460274..4460852 1 NC_008228.1 PFAM: transport-associated; KEGG: pha:PSHAa2525 hypothetical protein; transport-associated protein 4460852 4175476 Patl_3696 Pseudoalteromonas atlantica T6c transport-associated protein YP_663252.1 4460274 D 342610 CDS YP_663253.1 109899998 4175477 complement(4461144..4461569) 1 NC_008228.1 PFAM: Stringent starvation protein B; KEGG: vvy:VV0600 stringent starvation protein B; stringent starvation protein B 4461569 4175477 Patl_3697 Pseudoalteromonas atlantica T6c stringent starvation protein B YP_663253.1 4461144 R 342610 CDS YP_663254.1 109899999 4175478 complement(4461584..4462216) 1 NC_008228.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A 4462216 sspA 4175478 sspA Pseudoalteromonas atlantica T6c stringent starvation protein A YP_663254.1 4461584 R 342610 CDS YP_663255.1 109900000 4175479 complement(4462410..4463144) 1 NC_008228.1 PFAM: cytochrome c1; KEGG: ilo:IL0418 cytochrome c1; cytochrome c1 4463144 4175479 Patl_3699 Pseudoalteromonas atlantica T6c cytochrome c1 YP_663255.1 4462410 R 342610 CDS YP_663256.1 109900001 4175480 complement(4463141..4464409) 1 NC_008228.1 PFAM: cytochrome b/b6-like; KEGG: pha:PSHAa2529 ubiquinol-cytochrome c reductase, cytochrome b; cytochrome b/b6-like protein 4464409 4175480 Patl_3700 Pseudoalteromonas atlantica T6c cytochrome b/b6-like protein YP_663256.1 4463141 R 342610 CDS YP_663257.1 109900002 4175481 complement(4464411..4465043) 1 NC_008228.1 KEGG: ilo:IL0416 ubiquinol-cytochrome C reductase iron-sulfur subunit; TIGRFAM: Twin-arginine translocation pathway signal ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] region; ubiquinol-cytochrome c reductase, iron-sulfur subunit 4465043 4175481 Patl_3701 Pseudoalteromonas atlantica T6c ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_663257.1 4464411 R 342610 CDS YP_663258.1 109900003 4175482 complement(4465301..4465693) 1 NC_008228.1 PFAM: ribosomal protein S9; KEGG: son:SO3939 ribosomal protein S9; 30S ribosomal protein S9 4465693 4175482 Patl_3702 Pseudoalteromonas atlantica T6c 30S ribosomal protein S9 YP_663258.1 4465301 R 342610 CDS YP_663259.1 109900004 4175483 complement(4465706..4466134) 1 NC_008228.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 4466134 rplM 4175483 rplM Pseudoalteromonas atlantica T6c 50S ribosomal protein L13 YP_663259.1 4465706 R 342610 CDS YP_663260.1 109900005 4175484 complement(4466453..4467040) 1 NC_008228.1 PFAM: CBS domain containing protein; KEGG: cps:CPS_1349 CBS domain protein; signal transduction protein 4467040 4175484 Patl_3704 Pseudoalteromonas atlantica T6c signal transduction protein YP_663260.1 4466453 R 342610 CDS YP_663261.1 109900006 4175485 complement(4467148..4467450) 1 NC_008228.1 hypothetical protein 4467450 4175485 Patl_3705 Pseudoalteromonas atlantica T6c hypothetical protein YP_663261.1 4467148 R 342610 CDS YP_663262.1 109900007 4175486 complement(4467624..4468478) 1 NC_008228.1 TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: hch:HCH_01808 predicted pyrophosphatase; MazG family protein 4468478 4175486 Patl_3706 Pseudoalteromonas atlantica T6c MazG family protein YP_663262.1 4467624 R 342610 CDS YP_663263.1 109900008 4175487 complement(4468478..4470640) 1 NC_008228.1 KEGG: son:SO3455 GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT TGS RelA/SpoT; (p)ppGpp synthetase SpoT/RelA 4470640 4175487 Patl_3707 Pseudoalteromonas atlantica T6c (p)ppGpp synthetase SpoT/RelA YP_663263.1 4468478 R 342610 CDS YP_663264.1 109900009 4175488 complement(4470916..4471296) 1 NC_008228.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 4471296 acpS 4175488 acpS Pseudoalteromonas atlantica T6c 4'-phosphopantetheinyl transferase YP_663264.1 4470916 R 342610 CDS YP_663265.1 109900010 4175489 complement(4471311..4472048) 1 NC_008228.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 4472048 4175489 Patl_3709 Pseudoalteromonas atlantica T6c pyridoxine 5'-phosphate synthase YP_663265.1 4471311 R 342610 CDS YP_663266.1 109900011 4175490 complement(4472045..4472767) 1 NC_008228.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: vch:VC2459 DNA repair protein RecO; DNA repair protein RecO 4472767 4175490 Patl_3710 Pseudoalteromonas atlantica T6c DNA repair protein RecO YP_663266.1 4472045 R 342610 CDS YP_663267.1 109900012 4175491 complement(4472815..4473099) 1 NC_008228.1 KEGG: vfi:VF0709 hypothetical protein; hypothetical protein 4473099 4175491 Patl_3711 Pseudoalteromonas atlantica T6c hypothetical protein YP_663267.1 4472815 R 342610 CDS YP_663268.1 109900013 4175492 complement(4473196..4474914) 1 NC_008228.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ-like phosphoesterase, DHHA1; KEGG: ssn:SSO_3045 ssDNA exonuclease; single-stranded-DNA-specific exonuclease RecJ 4474914 4175492 Patl_3712 Pseudoalteromonas atlantica T6c single-stranded-DNA-specific exonuclease RecJ YP_663268.1 4473196 R 342610 CDS YP_663269.1 109900014 4175493 complement(4474995..4475780) 1 NC_008228.1 KEGG: son:SO0951 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC 4475780 4175493 Patl_3713 Pseudoalteromonas atlantica T6c thiol:disulfide interchange protein DsbC YP_663269.1 4474995 R 342610 CDS YP_663270.1 109900015 4175494 complement(4475869..4476774) 1 NC_008228.1 TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase phage integrase-like SAM-like; KEGG: pha:PSHAa0514 site-specific tyrosine recombinase XerD; tyrosine recombinase XerD 4476774 4175494 Patl_3714 Pseudoalteromonas atlantica T6c tyrosine recombinase XerD YP_663270.1 4475869 R 342610 CDS YP_663271.1 109900016 4175495 complement(4476764..4477075) 1 NC_008228.1 KEGG: ilo:IL0757 uncharacterized conserved protein containing predicted Zn-ribbon like domain; Zn-ribbon like domain-containing protein 4477075 4175495 Patl_3715 Pseudoalteromonas atlantica T6c Zn-ribbon like domain-containing protein YP_663271.1 4476764 R 342610 CDS YP_663272.1 109900017 4175496 complement(4477159..4478271) 1 NC_008228.1 KEGG: pha:PSHAa2602 twitching motility protein PilU (type IV pili); TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: ATPase; twitching motility protein 4478271 4175496 Patl_3716 Pseudoalteromonas atlantica T6c twitching motility protein YP_663272.1 4477159 R 342610 CDS YP_663273.1 109900018 4175497 complement(4478304..4479347) 1 NC_008228.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: cps:CPS_3662 twitching motility protein PilT; twitching motility protein 4479347 4175497 Patl_3717 Pseudoalteromonas atlantica T6c twitching motility protein YP_663273.1 4478304 R 342610 CDS YP_663274.1 109900019 4175498 4479376..4480059 1 NC_008228.1 TIGRFAM: Protein of unknown function UPF0001; PFAM: alanine racemase-like; KEGG: son:SO3352 conserved hypothetical protein TIGR00044; hypothetical protein 4480059 4175498 Patl_3718 Pseudoalteromonas atlantica T6c hypothetical protein YP_663274.1 4479376 D 342610 CDS YP_663275.1 109900020 4175499 4480196..4481017 1 NC_008228.1 KEGG: ppr:PBPRA3144 putative pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent NAD-dependent glycerol-3-phosphate dehydrogenase-like; pyrroline-5-carboxylate reductase 4481017 4175499 Patl_3719 Pseudoalteromonas atlantica T6c pyrroline-5-carboxylate reductase YP_663275.1 4480196 D 342610 CDS YP_663276.1 109900021 4175500 4481043..4481585 1 NC_008228.1 PFAM: protein of unknown function YGGT; KEGG: son:SO3355 hypothetical protein; hypothetical protein 4481585 4175500 Patl_3720 Pseudoalteromonas atlantica T6c hypothetical protein YP_663276.1 4481043 D 342610 CDS YP_663277.1 109900022 4175501 4481611..4482015 1 NC_008228.1 KEGG: cps:CPS_3666 hypothetical protein; hypothetical protein 4482015 4175501 Patl_3721 Pseudoalteromonas atlantica T6c hypothetical protein YP_663277.1 4481611 D 342610 CDS YP_663278.1 109900023 4175502 4482102..4483409 1 NC_008228.1 KEGG: rba:RB2547 signal peptide prediction; signal peptide prediction 4483409 4175502 Patl_3722 Pseudoalteromonas atlantica T6c signal peptide prediction YP_663278.1 4482102 D 342610 CDS YP_663279.1 109900024 4175503 4483430..4486141 1 NC_008228.1 PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: vvy:VVA1472 sensory box sensor histidine kinase/response regulator; periplasmic sensor hybrid histidine kinase 4486141 4175503 Patl_3723 Pseudoalteromonas atlantica T6c periplasmic sensor hybrid histidine kinase YP_663279.1 4483430 D 342610 CDS YP_663280.1 109900025 4175504 complement(4486204..4487376) 1 NC_008228.1 PFAM: helix-turn-helix, AraC type; KEGG: eca:ECA0101 xylose operon regulatory protein; AraC family transcriptional regulator 4487376 4175504 Patl_3724 Pseudoalteromonas atlantica T6c AraC family transcriptional regulator YP_663280.1 4486204 R 342610 CDS YP_663281.1 109900026 4175505 4487559..4489037 1 NC_008228.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: yps:YPTB3892 xylulose kinase; xylulokinase 4489037 4175505 Patl_3725 Pseudoalteromonas atlantica T6c xylulokinase YP_663281.1 4487559 D 342610 CDS YP_663282.1 109900027 4175506 4489191..4490510 1 NC_008228.1 catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 4490510 4175506 Patl_3726 Pseudoalteromonas atlantica T6c xylose isomerase YP_663282.1 4489191 D 342610 CDS YP_663283.1 109900028 4175507 complement(4491062..4492462) 1 NC_008228.1 TIGRFAM: sugar transporter; PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: xac:XAC1777 MFS transporter; sugar transporter 4492462 4175507 Patl_3727 Pseudoalteromonas atlantica T6c sugar transporter YP_663283.1 4491062 R 342610 CDS YP_663284.1 109900029 4175508 complement(4492590..4493741) 1 NC_008228.1 PFAM: glycoside hydrolase, family 43; KEGG: xcb:XC_4214 xylosidase/arabinosidase; alpha-L-arabinofuranosidase 4493741 4175508 Patl_3728 Pseudoalteromonas atlantica T6c alpha-L-arabinofuranosidase YP_663284.1 4492590 R 342610 CDS YP_663285.1 109900030 4175509 complement(4493876..4494604) 1 NC_008228.1 PFAM: NUDIX hydrolase; KEGG: bth:BT0354 hypothetical protein; NUDIX hydrolase 4494604 4175509 Patl_3729 Pseudoalteromonas atlantica T6c NUDIX hydrolase YP_663285.1 4493876 R 342610 CDS YP_663286.1 109900031 4175510 4494867..4497284 1 NC_008228.1 PFAM: glycoside hydrolase, family 3-like; KEGG: ccr:CC3054 xylosidase/arabinosidase; glycoside hydrolase 4497284 4175510 Patl_3730 Pseudoalteromonas atlantica T6c glycoside hydrolase YP_663286.1 4494867 D 342610 CDS YP_663287.1 109900032 4175511 complement(4497460..4498191) 1 NC_008228.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rru:Rru_A0201 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 4498191 4175511 Patl_3731 Pseudoalteromonas atlantica T6c endonuclease/exonuclease/phosphatase YP_663287.1 4497460 R 342610 CDS YP_663288.1 109900033 4175512 complement(4498197..4500359) 1 NC_008228.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: noc:Noc_1912 phospholipase D/transphosphatidylase; phospholipase D 4500359 4175512 Patl_3732 Pseudoalteromonas atlantica T6c phospholipase D YP_663288.1 4498197 R 342610 CDS YP_663289.1 109900034 4175513 4500742..4500948 1 NC_008228.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: cps:CPS_0718 cold-shock DNA-binding domain family protein; cold-shock DNA-binding domain-containing protein 4500948 4175513 Patl_3733 Pseudoalteromonas atlantica T6c cold-shock DNA-binding domain-containing protein YP_663289.1 4500742 D 342610 CDS YP_663290.1 109900035 4175514 complement(4501061..4501555) 1 NC_008228.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: hch:HCH_01604 peroxiredoxin; redoxin 4501555 4175514 Patl_3734 Pseudoalteromonas atlantica T6c redoxin YP_663290.1 4501061 R 342610 CDS YP_663291.1 109900036 4175515 complement(4501891..4502406) 1 NC_008228.1 PFAM: dihydrofolate reductase region; KEGG: cps:CPS_4505 dihydrofolate reductase; dihydrofolate reductase 4502406 4175515 Patl_3735 Pseudoalteromonas atlantica T6c dihydrofolate reductase YP_663291.1 4501891 R 342610 CDS YP_663292.1 109900037 4175516 complement(4502525..4503718) 1 NC_008228.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 4503718 obgE 4175516 obgE Pseudoalteromonas atlantica T6c GTPase ObgE YP_663292.1 4502525 R 342610 CDS YP_663293.1 109900038 4175517 complement(4503892..4504149) 1 NC_008228.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 4504149 rpmA 4175517 rpmA Pseudoalteromonas atlantica T6c 50S ribosomal protein L27 YP_663293.1 4503892 R 342610 CDS YP_663294.1 109900039 4175518 complement(4504165..4504476) 1 NC_008228.1 PFAM: ribosomal protein L21; KEGG: pmu:PM0347 50S ribosomal protein L21; 50S ribosomal protein L21 4504476 rplU 4175518 rplU Pseudoalteromonas atlantica T6c 50S ribosomal protein L21 YP_663294.1 4504165 R 342610 CDS YP_663295.1 109900040 4175519 4504716..4505687 1 NC_008228.1 PFAM: Polyprenyl synthetase; KEGG: ilo:IL0474 geranylgeranyl pyrophosphate synthase; trans-hexaprenyltranstransferase 4505687 4175519 Patl_3739 Pseudoalteromonas atlantica T6c trans-hexaprenyltranstransferase YP_663295.1 4504716 D 342610 CDS YP_663296.1 109900041 4175520 complement(4505749..4506714) 1 NC_008228.1 KEGG: pha:PSHAa2436 hypothetical protein; hypothetical protein 4506714 4175520 Patl_3740 Pseudoalteromonas atlantica T6c hypothetical protein YP_663296.1 4505749 R 342610 CDS YP_663297.1 109900042 4175521 complement(4506736..4507269) 1 NC_008228.1 KEGG: pha:PSHAa2437 hypothetical protein; hypothetical protein 4507269 4175521 Patl_3741 Pseudoalteromonas atlantica T6c hypothetical protein YP_663297.1 4506736 R 342610 CDS YP_663298.1 109900043 4175522 complement(4507262..4507828) 1 NC_008228.1 PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: cps:CPS_4364 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 4507828 4175522 Patl_3742 Pseudoalteromonas atlantica T6c ECF subfamily RNA polymerase sigma-24 factor YP_663298.1 4507262 R 342610 CDS YP_663299.1 109900044 4175523 4507858..4508589 1 NC_008228.1 PFAM: MOSC domain containing protein; KEGG: dar:Daro_0036 MOSC; MOSC domain-containing protein 4508589 4175523 Patl_3743 Pseudoalteromonas atlantica T6c MOSC domain-containing protein YP_663299.1 4507858 D 342610 CDS YP_663300.1 109900045 4175524 complement(4508663..4509115) 1 NC_008228.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 4509115 rplI 4175524 rplI Pseudoalteromonas atlantica T6c 50S ribosomal protein L9 YP_663300.1 4508663 R 342610 CDS YP_663301.1 109900046 4175525 complement(4509142..4509369) 1 NC_008228.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 4509369 rpsR 4175525 rpsR Pseudoalteromonas atlantica T6c 30S ribosomal protein S18 YP_663301.1 4509142 R 342610 CDS YP_663302.1 109900047 4175526 complement(4509381..4509788) 1 NC_008228.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 4509788 rpsF 4175526 rpsF Pseudoalteromonas atlantica T6c 30S ribosomal protein S6 YP_663302.1 4509381 R 342610 CDS YP_663303.1 109900048 4175527 complement(4510002..4512347) 1 NC_008228.1 sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor protein ArcB 4512347 4175527 Patl_3747 Pseudoalteromonas atlantica T6c aerobic respiration control sensor protein ArcB YP_663303.1 4510002 R 342610 CDS YP_663304.1 109900049 4175528 4512978..4517444 1 NC_008228.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 4517444 gltB 4175528 gltB Pseudoalteromonas atlantica T6c glutamate synthase subunit alpha YP_663304.1 4512978 D 342610 CDS YP_663305.1 109900050 4175529 4517464..4518879 1 NC_008228.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 4518879 gltD 4175529 gltD Pseudoalteromonas atlantica T6c glutamate synthase subunit beta YP_663305.1 4517464 D 342610 CDS YP_663306.1 109900051 4175530 4519114..4520280 1 NC_008228.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: cps:CPS_1431 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 4520280 4175530 Patl_3750 Pseudoalteromonas atlantica T6c iron-containing alcohol dehydrogenase YP_663306.1 4519114 D 342610 CDS YP_663307.1 109900052 4175531 complement(4520449..4521117) 1 NC_008228.1 PFAM: DSBA oxidoreductase; KEGG: psp:PSPPH_3908 2-hydroxychromene-2-carboxylate isomerase family protein; DSBA oxidoreductase 4521117 4175531 Patl_3751 Pseudoalteromonas atlantica T6c DSBA oxidoreductase YP_663307.1 4520449 R 342610 CDS YP_663308.1 109900053 4175532 4521533..4521823 1 NC_008228.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 4521823 groES 4175532 groES Pseudoalteromonas atlantica T6c co-chaperonin GroES YP_663308.1 4521533 D 342610 CDS YP_663309.1 109900054 4175533 4521858..4523504 1 NC_008228.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 4523504 groEL 4175533 groEL Pseudoalteromonas atlantica T6c chaperonin GroEL YP_663309.1 4521858 D 342610 CDS YP_663310.1 109900055 4175535 4524185..4525468 1 NC_008228.1 KEGG: lpp:lpp2401 hypothetical protein; hypothetical protein 4525468 4175535 Patl_3755 Pseudoalteromonas atlantica T6c hypothetical protein YP_663310.1 4524185 D 342610 CDS YP_663311.1 109900056 4175536 complement(4525491..4526447) 1 NC_008228.1 PFAM: transposase, IS111A/IS1328/IS1533 transposase IS116/IS110/IS902; KEGG: cps:CPS_2742 ISCps7, transposase; transposase IS116/IS110/IS902 4526447 4175536 Patl_3756 Pseudoalteromonas atlantica T6c transposase IS116/IS110/IS902 YP_663311.1 4525491 R 342610 CDS YP_663312.1 109900057 4175537 4527152..4527340 1 NC_008228.1 KEGG: pha:PSHAa1585 hypothetical protein; hypothetical protein 4527340 4175537 Patl_3757 Pseudoalteromonas atlantica T6c hypothetical protein YP_663312.1 4527152 D 342610 CDS YP_663313.1 109900058 4175539 4528253..4529266 1 NC_008228.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: ret:RHE_PF00156 putative zinc-dependent alcohol dehydrogenase protein; zinc-binding alcohol dehydrogenase 4529266 4175539 Patl_3759 Pseudoalteromonas atlantica T6c zinc-binding alcohol dehydrogenase YP_663313.1 4528253 D 342610 CDS YP_663314.1 109900059 4175540 4529366..4530841 1 NC_008228.1 PFAM: aldehyde dehydrogenase; KEGG: eba:ebA3161 P-hydroxybenzaldehyde dehydrogenase; betaine aldehyde dehydrogenase 4530841 4175540 Patl_3760 Pseudoalteromonas atlantica T6c betaine aldehyde dehydrogenase YP_663314.1 4529366 D 342610 CDS YP_663315.1 109900060 4175541 4530893..4531510 1 NC_008228.1 PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 4531510 4175541 Patl_3761 Pseudoalteromonas atlantica T6c antibiotic biosynthesis monooxygenase YP_663315.1 4530893 D 342610 CDS YP_663316.1 109900061 4175542 4531557..4532375 1 NC_008228.1 PFAM: alpha-acetolactate decarboxylase; KEGG: mma:MM0639 alpha-acetolactate decarboxylase; acetolactate decarboxylase 4532375 4175542 Patl_3762 Pseudoalteromonas atlantica T6c acetolactate decarboxylase YP_663316.1 4531557 D 342610 CDS YP_663317.1 109900062 4175543 4532443..4533573 1 NC_008228.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: nmu:Nmul_A1473 zinc-containing alcohol dehydrogenase superfamily; zinc-binding alcohol dehydrogenase 4533573 4175543 Patl_3763 Pseudoalteromonas atlantica T6c zinc-binding alcohol dehydrogenase YP_663317.1 4532443 D 342610 CDS YP_663318.1 109900063 4175544 4533999..4534184 1 NC_008228.1 PFAM: plasmid maintenance system killer; KEGG: ilo:IL2055 RelE/ParE family protein, cytotoxic translational repressor of toxin-antitoxin stability system; plasmid maintenance system killer protein 4534184 4175544 Patl_3764 Pseudoalteromonas atlantica T6c plasmid maintenance system killer protein YP_663318.1 4533999 D 342610 CDS YP_663319.1 109900064 4175545 4534184..4534477 1 NC_008228.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix motif; KEGG: noc:Noc_0437 plasmid maintenance system antidote protein; XRE family plasmid maintenance system antidote protein 4534477 4175545 Patl_3765 Pseudoalteromonas atlantica T6c XRE family plasmid maintenance system antidote protein YP_663319.1 4534184 D 342610 CDS YP_663320.1 109900065 4175546 complement(4535353..4536000) 1 NC_008228.1 hypothetical protein 4536000 4175546 Patl_3766 Pseudoalteromonas atlantica T6c hypothetical protein YP_663320.1 4535353 R 342610 CDS YP_663321.1 109900066 4175547 complement(4536005..4536514) 1 NC_008228.1 hypothetical protein 4536514 4175547 Patl_3767 Pseudoalteromonas atlantica T6c hypothetical protein YP_663321.1 4536005 R 342610 CDS YP_663322.1 109900067 4175548 complement(4536615..4537367) 1 NC_008228.1 hypothetical protein 4537367 4175548 Patl_3768 Pseudoalteromonas atlantica T6c hypothetical protein YP_663322.1 4536615 R 342610 CDS YP_663323.1 109900068 4175549 complement(4537842..4540112) 1 NC_008228.1 PFAM: transcriptional regulatory protein-like; KEGG: ilo:IL1819 N-terminal winged-HTH domain fused to TolB-like domain; transcriptional regulator CadC 4540112 4175549 Patl_3769 Pseudoalteromonas atlantica T6c transcriptional regulator CadC YP_663323.1 4537842 R 342610 CDS YP_663324.1 109900069 4175550 4540393..4541679 1 NC_008228.1 PFAM: beta-lactamase; KEGG: bat:BAS2564 hypothetical protein; beta-lactamase 4541679 4175550 Patl_3770 Pseudoalteromonas atlantica T6c beta-lactamase YP_663324.1 4540393 D 342610 CDS YP_663325.1 109900070 4175551 complement(4541892..4542488) 1 NC_008228.1 PFAM: regulatory protein, TetR; KEGG: nfa:nfa35010 putative transcriptional regulator; TetR family transcriptional regulator 4542488 4175551 Patl_3771 Pseudoalteromonas atlantica T6c TetR family transcriptional regulator YP_663325.1 4541892 R 342610 CDS YP_663326.1 109900071 4175552 complement(4542488..4543345) 1 NC_008228.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: nfa:nfa35020 hypothetical protein; phytanoyl-CoA dioxygenase 4543345 4175552 Patl_3772 Pseudoalteromonas atlantica T6c phytanoyl-CoA dioxygenase YP_663326.1 4542488 R 342610 CDS YP_663327.1 109900072 4175553 4543813..4544550 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: ccr:CC1518 ABC transporter, ATP-binding protein; ABC transporter-like protein 4544550 4175553 Patl_3773 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_663327.1 4543813 D 342610 CDS YP_663328.1 109900073 4175554 4544568..4546010 1 NC_008228.1 KEGG: ccr:CC1519 hypothetical protein; hypothetical protein 4546010 4175554 Patl_3774 Pseudoalteromonas atlantica T6c hypothetical protein YP_663328.1 4544568 D 342610 CDS YP_663329.1 109900074 4175555 4546007..4547317 1 NC_008228.1 KEGG: ccr:CC1520 hypothetical protein; hypothetical protein 4547317 4175555 Patl_3775 Pseudoalteromonas atlantica T6c hypothetical protein YP_663329.1 4546007 D 342610 CDS YP_663330.1 109900075 4175556 4547345..4549468 1 NC_008228.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa1584 TonB-dependent receptor for ferrichrome transport; TonB-dependent siderophore receptor 4549468 4175556 Patl_3776 Pseudoalteromonas atlantica T6c TonB-dependent siderophore receptor YP_663330.1 4547345 D 342610 CDS YP_663331.1 109900076 4175557 complement(4549620..4550882) 1 NC_008228.1 PFAM: peptidase M24; KEGG: pha:PSHAb0215 putative metal-dependent dipeptidase; peptidase M24 4550882 4175557 Patl_3777 Pseudoalteromonas atlantica T6c peptidase M24 YP_663331.1 4549620 R 342610 CDS YP_663332.1 109900077 4175558 complement(4551126..4552115) 1 NC_008228.1 PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: pha:PSHAa1381 transcriptional regulator; AraC family transcriptional regulator 4552115 4175558 Patl_3778 Pseudoalteromonas atlantica T6c AraC family transcriptional regulator YP_663332.1 4551126 R 342610 CDS YP_663333.1 109900078 4175559 4552259..4554175 1 NC_008228.1 PFAM: beta-ketoacyl synthase; KEGG: pae:PA5174 probable beta-ketoacyl synthase; beta-ketoacyl synthase 4554175 4175559 Patl_3779 Pseudoalteromonas atlantica T6c beta-ketoacyl synthase YP_663333.1 4552259 D 342610 CDS YP_663334.1 109900079 4175560 4554397..4555062 1 NC_008228.1 PFAM: lipolytic enzyme, G-D-S-L; KEGG: rba:RB973 mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase); G-D-S-L lipolytic protein 4555062 4175560 Patl_3780 Pseudoalteromonas atlantica T6c G-D-S-L lipolytic protein YP_663334.1 4554397 D 342610 CDS YP_663335.1 109900080 4175561 4555764..4556369 1 NC_008228.1 KEGG: rba:RB3005 hypothetical protein; hypothetical protein 4556369 4175561 Patl_3781 Pseudoalteromonas atlantica T6c hypothetical protein YP_663335.1 4555764 D 342610 CDS YP_663336.1 109900081 4175562 complement(4556525..4556797) 1 NC_008228.1 hypothetical protein 4556797 4175562 Patl_3782 Pseudoalteromonas atlantica T6c hypothetical protein YP_663336.1 4556525 R 342610 CDS YP_663337.1 109900082 4175563 complement(4556839..4558086) 1 NC_008228.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: rpb:RPB_1146 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase-like protein 4558086 4175563 Patl_3783 Pseudoalteromonas atlantica T6c acyl-CoA dehydrogenase-like protein YP_663337.1 4556839 R 342610 CDS YP_663338.1 109900083 4175564 4558711..4558920 1 NC_008228.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pha:PSHAa2980 cold shock-like protein CspE, RNA chaperone, transcription antiterminator, affects expression of RpoS and UspA; cold-shock DNA-binding domain-containing protein 4558920 4175564 Patl_3784 Pseudoalteromonas atlantica T6c cold-shock DNA-binding domain-containing protein YP_663338.1 4558711 D 342610 CDS YP_663339.1 109900084 4175565 4559193..4561439 1 NC_008228.1 KEGG: pha:PSHAa2981 cold-shock RNAse R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases ribonuclease R; PFAM: ribonuclease II Ribonuclease B, OB region-like; SMART: Cold shock protein; ribonuclease R 4561439 4175565 Patl_3785 Pseudoalteromonas atlantica T6c ribonuclease R YP_663339.1 4559193 D 342610 CDS YP_663340.1 109900085 4175566 complement(4561557..4562192) 1 NC_008228.1 KEGG: bbr:BB3073 putative integral membrane protein; hypothetical protein 4562192 4175566 Patl_3786 Pseudoalteromonas atlantica T6c hypothetical protein YP_663340.1 4561557 R 342610 CDS YP_663341.1 109900086 4175567 complement(4562262..4562735) 1 NC_008228.1 hypothetical protein 4562735 4175567 Patl_3787 Pseudoalteromonas atlantica T6c hypothetical protein YP_663341.1 4562262 R 342610 CDS YP_663342.1 109900087 4175568 complement(4562781..4563035) 1 NC_008228.1 PFAM: protein of unknown function DUF465; KEGG: cps:CPS_0008 hypothetical protein; hypothetical protein 4563035 4175568 Patl_3788 Pseudoalteromonas atlantica T6c hypothetical protein YP_663342.1 4562781 R 342610 CDS YP_663343.1 109900088 4175569 4563405..4563908 1 NC_008228.1 KEGG: cps:CPS_0942 putative lipoprotein; putative lipoprotein 4563908 4175569 Patl_3789 Pseudoalteromonas atlantica T6c putative lipoprotein YP_663343.1 4563405 D 342610 CDS YP_663344.1 109900089 4175570 4564027..4564464 1 NC_008228.1 KEGG: vch:VCA0893 hypothetical protein; hypothetical protein 4564464 4175570 Patl_3790 Pseudoalteromonas atlantica T6c hypothetical protein YP_663344.1 4564027 D 342610 CDS YP_663345.1 109900090 4175571 4564671..4566182 1 NC_008228.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: dar:Daro_2807 acetyl-CoA hydrolase/transferase; Acetyl-CoA hydrolase 4566182 4175571 Patl_3791 Pseudoalteromonas atlantica T6c Acetyl-CoA hydrolase YP_663345.1 4564671 D 342610 CDS YP_663346.1 109900091 4175572 4566275..4566601 1 NC_008228.1 KEGG: ppr:PBPRA1285 hypothetical protein; hypothetical protein 4566601 4175572 Patl_3792 Pseudoalteromonas atlantica T6c hypothetical protein YP_663346.1 4566275 D 342610 CDS YP_663347.1 109900092 4175573 complement(4566705..4568153) 1 NC_008228.1 forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase 4568153 dgt 4175573 dgt Pseudoalteromonas atlantica T6c deoxyguanosinetriphosphate triphosphohydrolase YP_663347.1 4566705 R 342610 CDS YP_663348.1 109900093 4175574 complement(4568310..4569122) 1 NC_008228.1 hypothetical protein 4569122 4175574 Patl_3794 Pseudoalteromonas atlantica T6c hypothetical protein YP_663348.1 4568310 R 342610 CDS YP_663349.1 109900094 4175575 4569680..4572322 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: nar:Saro_2541 TonB-dependent receptor; TonB-dependent receptor 4572322 4175575 Patl_3795 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_663349.1 4569680 D 342610 CDS YP_663350.1 109900095 4175576 complement(4572390..4575512) 1 NC_008228.1 PFAM: TPR repeat Sel1-like repeat Tetratricopeptide TPR_3 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: noc:Noc_0166 TPR repeat protein; hypothetical protein 4575512 4175576 Patl_3796 Pseudoalteromonas atlantica T6c hypothetical protein YP_663350.1 4572390 R 342610 CDS YP_663351.1 109900096 4175577 complement(4575912..4577534) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: vpa:VPA0609 hypothetical protein; diguanylate cyclase/phosphodiesterase 4577534 4175577 Patl_3797 Pseudoalteromonas atlantica T6c diguanylate cyclase/phosphodiesterase YP_663351.1 4575912 R 342610 CDS YP_663352.1 109900097 4175578 complement(4577790..4579178) 1 NC_008228.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: yps:YPTB0493 probable outer membrane multidrug efflux lipoprotein, OMF family; RND efflux system outer membrane lipoprotein 4579178 4175578 Patl_3798 Pseudoalteromonas atlantica T6c RND efflux system outer membrane lipoprotein YP_663352.1 4577790 R 342610 CDS YP_663353.1 109900098 4175579 complement(4579252..4582413) 1 NC_008228.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: yps:YPTB0492 multidrug efflux protein, RND family; hydrophobe/amphiphile efflux-1 (HAE1) family protein 4582413 4175579 Patl_3799 Pseudoalteromonas atlantica T6c hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_663353.1 4579252 R 342610 CDS YP_663354.1 109900099 4175580 complement(4582417..4583631) 1 NC_008228.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: gsu:GSU2697 multidrug resistance protein; RND family efflux transporter MFP subunit 4583631 4175580 Patl_3800 Pseudoalteromonas atlantica T6c RND family efflux transporter MFP subunit YP_663354.1 4582417 R 342610 CDS YP_663355.1 109900100 4175581 complement(4584113..4585702) 1 NC_008228.1 KEGG: pfl:PFL_0986 PepSY-associated membrane protein; PepSY-associated membrane protein 4585702 4175581 Patl_3801 Pseudoalteromonas atlantica T6c PepSY-associated membrane protein YP_663355.1 4584113 R 342610 CDS YP_663356.1 109900101 4175582 complement(4585699..4585980) 1 NC_008228.1 hypothetical protein 4585980 4175582 Patl_3802 Pseudoalteromonas atlantica T6c hypothetical protein YP_663356.1 4585699 R 342610 CDS YP_663357.1 109900102 4175583 complement(4586003..4588426) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: son:SO1482 TonB-dependent receptor, putative; TonB-dependent receptor, plug 4588426 4175583 Patl_3803 Pseudoalteromonas atlantica T6c TonB-dependent receptor, plug YP_663357.1 4586003 R 342610 CDS YP_663358.1 109900103 4175584 complement(4588568..4589194) 1 NC_008228.1 KEGG: cps:CPS_2861 hypothetical protein; hypothetical protein 4589194 4175584 Patl_3804 Pseudoalteromonas atlantica T6c hypothetical protein YP_663358.1 4588568 R 342610 CDS YP_663359.1 109900104 4175585 complement(4589280..4591127) 1 NC_008228.1 KEGG: cps:CPS_2797 hypothetical protein; hypothetical protein 4591127 4175585 Patl_3805 Pseudoalteromonas atlantica T6c hypothetical protein YP_663359.1 4589280 R 342610 CDS YP_663360.1 109900105 4175586 complement(4591160..4591690) 1 NC_008228.1 hypothetical protein 4591690 4175586 Patl_3806 Pseudoalteromonas atlantica T6c hypothetical protein YP_663360.1 4591160 R 342610 CDS YP_663361.1 109900106 4175587 complement(4591867..4592907) 1 NC_008228.1 PFAM: phage integrase; KEGG: neu:NE0588 phage integrase:chain length determinant protein; phage integrase 4592907 4175587 Patl_3807 Pseudoalteromonas atlantica T6c phage integrase YP_663361.1 4591867 R 342610 CDS YP_663362.1 109900107 4175588 complement(4592926..4593903) 1 NC_008228.1 KEGG: neu:NE0588 phage integrase:chain length determinant protein; hypothetical protein 4593903 4175588 Patl_3808 Pseudoalteromonas atlantica T6c hypothetical protein YP_663362.1 4592926 R 342610 CDS YP_663363.1 109900108 4175589 complement(4594309..4595130) 1 NC_008228.1 PFAM: FAD dependent oxidoreductase; KEGG: sco:SCO6740 D-amino acid oxidase; FAD dependent oxidoreductase 4595130 4175589 Patl_3809 Pseudoalteromonas atlantica T6c FAD dependent oxidoreductase YP_663363.1 4594309 R 342610 CDS YP_663364.1 109900109 4175590 complement(4595584..4596564) 1 NC_008228.1 PFAM: alpha/beta hydrolase fold; KEGG: pae:PA3301 hypothetical protein; alpha/beta hydrolase fold protein 4596564 4175590 Patl_3810 Pseudoalteromonas atlantica T6c alpha/beta hydrolase fold protein YP_663364.1 4595584 R 342610 CDS YP_663365.1 109900110 4175591 complement(4596675..4598318) 1 NC_008228.1 PFAM: AMP-dependent synthetase and ligase; KEGG: cps:CPS_0675 AMP-binding protein; AMP-dependent synthetase and ligase 4598318 4175591 Patl_3811 Pseudoalteromonas atlantica T6c AMP-dependent synthetase and ligase YP_663365.1 4596675 R 342610 CDS YP_663366.1 109900111 4175592 complement(4598397..4599179) 1 NC_008228.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: nar:Saro_1897 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 4599179 4175592 Patl_3812 Pseudoalteromonas atlantica T6c enoyl-CoA hydratase/isomerase YP_663366.1 4598397 R 342610 CDS YP_663367.1 109900112 4175593 complement(4599438..4600034) 1 NC_008228.1 KEGG: sil:SPOA0348 hypothetical protein; putative transcriptional regulator 4600034 4175593 Patl_3813 Pseudoalteromonas atlantica T6c putative transcriptional regulator YP_663367.1 4599438 R 342610 CDS YP_663368.1 109900113 4175594 complement(4600037..4603918) 1 NC_008228.1 PFAM: Hydantoinase/oxoprolinase Hydantoinase B/oxoprolinase Hydantoinaseoxoprolinase-like; KEGG: ret:RHE_PE00300 probable N-methylhydantoinase (ATP-hydrolyzing)/5-oxoprolinase protein; 5-oxoprolinase 4603918 4175594 Patl_3814 Pseudoalteromonas atlantica T6c 5-oxoprolinase YP_663368.1 4600037 R 342610 CDS YP_663369.1 109900114 4175595 4604136..4605362 1 NC_008228.1 PFAM: natural resistance-associated macrophage protein; KEGG: ilo:IL2296 Mn2+/Fe2+ transporter, NRAMP family; natural resistance-associated macrophage protein 4605362 4175595 Patl_3815 Pseudoalteromonas atlantica T6c natural resistance-associated macrophage protein YP_663369.1 4604136 D 342610 CDS YP_663370.1 109900115 4175596 complement(4605450..4605896) 1 NC_008228.1 KEGG: tcx:Tcr_0556 hypothetical protein; hypothetical protein 4605896 4175596 Patl_3816 Pseudoalteromonas atlantica T6c hypothetical protein YP_663370.1 4605450 R 342610 CDS YP_663371.1 109900116 4175597 complement(4605949..4607442) 1 NC_008228.1 PFAM: tryptophan halogenase; KEGG: cps:CPS_0992 putative tryptophan halogenase; tryptophan halogenase 4607442 4175597 Patl_3817 Pseudoalteromonas atlantica T6c tryptophan halogenase YP_663371.1 4605949 R 342610 CDS YP_663372.1 109900117 4175598 complement(4607623..4610547) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_0993 TonB-dependent receptor; TonB-dependent receptor 4610547 4175598 Patl_3818 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_663372.1 4607623 R 342610 CDS YP_663373.1 109900118 4175599 complement(4610753..4612030) 1 NC_008228.1 PFAM: major facilitator superfamily MFS_1; KEGG: ccr:CC1133 transporter, putative; major facilitator superfamily transporter 4612030 4175599 Patl_3819 Pseudoalteromonas atlantica T6c major facilitator superfamily transporter YP_663373.1 4610753 R 342610 CDS YP_663374.1 109900119 4175600 4612317..4614254 1 NC_008228.1 PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: noc:Noc_0218 alpha amylase, catalytic region; alpha amylase 4614254 4175600 Patl_3820 Pseudoalteromonas atlantica T6c alpha amylase YP_663374.1 4612317 D 342610 CDS YP_663375.1 109900120 4175601 complement(4614280..4615254) 1 NC_008228.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein, LacI; KEGG: hch:HCH_04796 transcriptional regulator; LacI family transcriptional regulator 4615254 4175601 Patl_3821 Pseudoalteromonas atlantica T6c LacI family transcriptional regulator YP_663375.1 4614280 R 342610 CDS YP_663376.1 109900121 4175602 4615767..4617098 1 NC_008228.1 TIGRFAM: sugar transporter; PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: rba:RB10309 xylose transporter; sugar transporter 4617098 4175602 Patl_3822 Pseudoalteromonas atlantica T6c sugar transporter YP_663376.1 4615767 D 342610 CDS YP_663377.1 109900122 4175603 4617095..4618690 1 NC_008228.1 KEGG: bsu:BG10320 levanase; PFAM: Glycosyl hydrolases family 32, N terminal Glycosyl hydrolase family 32-like; SMART: Glycoside hydrolase, family 32; levanase 4618690 4175603 Patl_3823 Pseudoalteromonas atlantica T6c levanase YP_663377.1 4617095 D 342610 CDS YP_663378.1 109900123 4175604 4618884..4619558 1 NC_008228.1 PFAM: glutathione S-transferase-like; KEGG: pfo:Pfl_5490 glutathione S-transferase-like; glutathione S-transferase-like protein 4619558 4175604 Patl_3824 Pseudoalteromonas atlantica T6c glutathione S-transferase-like protein YP_663378.1 4618884 D 342610 CDS YP_663379.1 109900124 4175605 4619628..4619822 1 NC_008228.1 KEGG: ilo:IL1293 Zn-ribbon protein; Zn-ribbon protein 4619822 4175605 Patl_3825 Pseudoalteromonas atlantica T6c Zn-ribbon protein YP_663379.1 4619628 D 342610 CDS YP_663380.1 109900125 4175606 4619849..4620205 1 NC_008228.1 hypothetical protein 4620205 4175606 Patl_3826 Pseudoalteromonas atlantica T6c hypothetical protein YP_663380.1 4619849 D 342610 CDS YP_663381.1 109900126 4175607 4620288..4621217 1 NC_008228.1 KEGG: cps:CPS_4478 hypothetical protein; hypothetical protein 4621217 4175607 Patl_3827 Pseudoalteromonas atlantica T6c hypothetical protein YP_663381.1 4620288 D 342610 CDS YP_663382.1 109900127 4175608 4621353..4622021 1 NC_008228.1 hypothetical protein 4622021 4175608 Patl_3828 Pseudoalteromonas atlantica T6c hypothetical protein YP_663382.1 4621353 D 342610 CDS YP_663383.1 109900128 4175609 complement(4622099..4623496) 1 NC_008228.1 PFAM: PhoH-like protein; SMART: ATPase Nucleotide binding protein, PINc; KEGG: cps:CPS_4518 PhoH family protein; PhoH-like protein 4623496 4175609 Patl_3829 Pseudoalteromonas atlantica T6c PhoH-like protein YP_663383.1 4622099 R 342610 CDS YP_663384.1 109900129 4175610 4623847..4626678 1 NC_008228.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 4626678 4175610 Patl_3830 Pseudoalteromonas atlantica T6c ATP-dependent helicase HepA YP_663384.1 4623847 D 342610 CDS YP_663385.1 109900130 4175611 4626693..4627349 1 NC_008228.1 PFAM: pseudouridine synthase; KEGG: pha:PSHAa2627 pseudouridylate synthase for 23S rRNA (position 746) and tRNAphe(position 32), dual specificity; pseudouridylate synthase 4627349 4175611 Patl_3831 Pseudoalteromonas atlantica T6c pseudouridylate synthase YP_663385.1 4626693 D 342610 CDS YP_663386.1 109900131 4175612 4627419..4628399 1 NC_008228.1 KEGG: pha:PSHAa2628 hypothetical protein; hypothetical protein 4628399 4175612 Patl_3832 Pseudoalteromonas atlantica T6c hypothetical protein YP_663386.1 4627419 D 342610 CDS YP_663387.1 109900132 4175613 4628554..4628886 1 NC_008228.1 KEGG: son:SO3813 hypothetical protein; hypothetical protein 4628886 4175613 Patl_3833 Pseudoalteromonas atlantica T6c hypothetical protein YP_663387.1 4628554 D 342610 CDS YP_663388.1 109900133 4175614 complement(4628897..4630150) 1 NC_008228.1 PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_0706 putative AmpG protein; major facilitator superfamily transporter 4630150 4175614 Patl_3834 Pseudoalteromonas atlantica T6c major facilitator superfamily transporter YP_663388.1 4628897 R 342610 CDS YP_663389.1 109900134 4175615 complement(4630197..4631147) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: pha:PSHAa1211 sensory box/GGDEF protein; diguanylate cyclase 4631147 4175615 Patl_3835 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_663389.1 4630197 R 342610 CDS YP_663390.1 109900135 4175616 complement(4631159..4632175) 1 NC_008228.1 PFAM: response regulator receiver; KEGG: ilo:IL0510 chemotaxis response regulator; response regulator receiver protein 4632175 4175616 Patl_3836 Pseudoalteromonas atlantica T6c response regulator receiver protein YP_663390.1 4631159 R 342610 CDS YP_663391.1 109900136 4175617 4632419..4633270 1 NC_008228.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 4633270 thyA 4175617 thyA Pseudoalteromonas atlantica T6c thymidylate synthase YP_663391.1 4632419 D 342610 CDS YP_663392.1 109900137 4175618 4633398..4634276 1 NC_008228.1 KEGG: vfi:VFA0707 transporter, drug/metabolite exporter family; drug/metabolite exporter family protein 4634276 4175618 Patl_3838 Pseudoalteromonas atlantica T6c drug/metabolite exporter family protein YP_663392.1 4633398 D 342610 CDS YP_663393.1 109900138 4175619 complement(4634346..4635638) 1 NC_008228.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: cps:CPS_0698 long-chain fatty acid transport protein; aromatic hydrocarbon degradation membrane protein 4635638 4175619 Patl_3839 Pseudoalteromonas atlantica T6c aromatic hydrocarbon degradation membrane protein YP_663393.1 4634346 R 342610 CDS YP_663394.1 109900139 4175620 complement(4635914..4636576) 1 NC_008228.1 PFAM: Abortive infection protein; KEGG: ava:Ava_C0052 abortive infection protein; abortive infection protein 4636576 4175620 Patl_3840 Pseudoalteromonas atlantica T6c abortive infection protein YP_663394.1 4635914 R 342610 CDS YP_663395.1 109900140 4175621 4636821..4637291 1 NC_008228.1 PFAM: Ferritin and Dps; KEGG: tcx:Tcr_1226 ferritin and Dps; Ferritin and Dps 4637291 4175621 Patl_3841 Pseudoalteromonas atlantica T6c Ferritin and Dps YP_663395.1 4636821 D 342610 CDS YP_663396.1 109900141 4175622 complement(4637381..4638163) 1 NC_008228.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pfo:Pfl_1187 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 4638163 4175622 Patl_3842 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_663396.1 4637381 R 342610 CDS YP_663397.1 109900142 4175623 complement(4638324..4639166) 1 NC_008228.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 4639166 4175623 Patl_3843 Pseudoalteromonas atlantica T6c prolipoprotein diacylglyceryl transferase YP_663397.1 4638324 R 342610 CDS YP_663398.1 109900143 4175624 complement(4639176..4639976) 1 NC_008228.1 PFAM: protein of unknown function DUF81; KEGG: ppr:PBPRA0579 conserved hypothetical protein; hypothetical protein 4639976 4175624 Patl_3844 Pseudoalteromonas atlantica T6c hypothetical protein YP_663398.1 4639176 R 342610 CDS YP_663399.1 109900144 4175625 complement(4639991..4642279) 1 NC_008228.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme GAF PEP-utilising enzyme, mobile region PEP-utilising enzyme-like; KEGG: cps:CPS_3624 phosphoenolpyruvate-protein phosphotransferase PtsP; phosphoenolpyruvate-protein phosphotransferase PtsP 4642279 4175625 Patl_3845 Pseudoalteromonas atlantica T6c phosphoenolpyruvate-protein phosphotransferase PtsP YP_663399.1 4639991 R 342610 CDS YP_663400.1 109900145 4175626 complement(4642289..4642813) 1 NC_008228.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 4642813 4175626 Patl_3846 Pseudoalteromonas atlantica T6c dinucleoside polyphosphate hydrolase YP_663400.1 4642289 R 342610 CDS YP_663401.1 109900146 4175627 4642873..4643523 1 NC_008228.1 PFAM: YhhN-like; KEGG: lpp:lpp1972 hypothetical protein; YjeF-like protein 4643523 4175627 Patl_3847 Pseudoalteromonas atlantica T6c YjeF-like protein YP_663401.1 4642873 D 342610 CDS YP_663402.1 109900147 4175628 4643516..4644202 1 NC_008228.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 4644202 4175628 Patl_3848 Pseudoalteromonas atlantica T6c DNA mismatch repair protein YP_663402.1 4643516 D 342610 CDS YP_663403.1 109900148 4175629 complement(4644275..4645705) 1 NC_008228.1 PFAM: aldehyde dehydrogenase; KEGG: bte:BTH_II0498 aldehyde dehydrogenase; aldehyde dehydrogenase 4645705 4175629 Patl_3849 Pseudoalteromonas atlantica T6c aldehyde dehydrogenase YP_663403.1 4644275 R 342610 CDS YP_663404.1 109900149 4175630 complement(4645716..4647356) 1 NC_008228.1 catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase 4647356 4175630 Patl_3850 Pseudoalteromonas atlantica T6c acetolactate synthase YP_663404.1 4645716 R 342610 CDS YP_663405.1 109900150 4175631 complement(4647517..4649004) 1 NC_008228.1 PFAM: adenylate cyclase; KEGG: ppr:PBPRA0445 conserved hypothetical protein; adenylate cyclase 4649004 4175631 Patl_3851 Pseudoalteromonas atlantica T6c adenylate cyclase YP_663405.1 4647517 R 342610 CDS YP_663406.1 109900151 4175632 4649149..4649748 1 NC_008228.1 PFAM: SH3, type 3; SMART: SH3-like region; KEGG: vvy:VV0573 SH3 domain protein; hypothetical protein 4649748 4175632 Patl_3852 Pseudoalteromonas atlantica T6c hypothetical protein YP_663406.1 4649149 D 342610 CDS YP_663407.1 109900152 4175633 4649830..4650471 1 NC_008228.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dra:DR1999 hypothetical protein; lysine exporter protein LysE/YggA 4650471 4175633 Patl_3853 Pseudoalteromonas atlantica T6c lysine exporter protein LysE/YggA YP_663407.1 4649830 D 342610 CDS YP_663408.1 109900153 4175634 4650512..4651015 1 NC_008228.1 KEGG: cps:CPS_4101 hypothetical protein; hypothetical protein 4651015 4175634 Patl_3854 Pseudoalteromonas atlantica T6c hypothetical protein YP_663408.1 4650512 D 342610 CDS YP_663409.1 109900154 4175635 4651017..4652780 1 NC_008228.1 KEGG: ilo:IL2158 hypothetical protein; hypothetical protein 4652780 4175635 Patl_3855 Pseudoalteromonas atlantica T6c hypothetical protein YP_663409.1 4651017 D 342610 CDS YP_663410.1 109900155 4175636 4652929..4653207 1 NC_008228.1 PFAM: Septum formation initiator; KEGG: cps:CPS_1071 septum formation initiator family protein; septum formation initiator 4653207 4175636 Patl_3856 Pseudoalteromonas atlantica T6c septum formation initiator YP_663410.1 4652929 D 342610 CDS YP_663411.1 109900156 4175637 4653214..4653909 1 NC_008228.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: stt:t2831 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 4653909 4175637 Patl_3857 Pseudoalteromonas atlantica T6c 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_663411.1 4653214 D 342610 CDS YP_663412.1 109900157 4175638 4653906..4654394 1 NC_008228.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 4654394 ispF 4175638 ispF Pseudoalteromonas atlantica T6c 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase YP_663412.1 4653906 D 342610 CDS YP_663413.1 109900158 4175639 4654399..4655451 1 NC_008228.1 PFAM: tRNA pseudouridine synthase D, TruD; KEGG: son:SO3436 tRNA pseudouridine synthase D; pseudouridylate synthase 4655451 4175639 Patl_3859 Pseudoalteromonas atlantica T6c pseudouridylate synthase YP_663413.1 4654399 D 342610 CDS YP_663414.1 109900159 4175640 4655448..4656194 1 NC_008228.1 KEGG: pha:PSHAa0687 acid phosphatase SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; stationary-phase survival protein SurE 4656194 4175640 Patl_3860 Pseudoalteromonas atlantica T6c stationary-phase survival protein SurE YP_663414.1 4655448 D 342610 CDS YP_663415.1 109900160 4175641 4656283..4656921 1 NC_008228.1 KEGG: cps:CPS_1076 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 4656921 4175641 Patl_3861 Pseudoalteromonas atlantica T6c protein-L-isoaspartate O-methyltransferase YP_663415.1 4656283 D 342610 CDS YP_663416.1 109900161 4175642 4657088..4657972 1 NC_008228.1 PFAM: protein of unknown function DUF368; KEGG: hch:HCH_01875 predicted membrane protein; hypothetical protein 4657972 4175642 Patl_3862 Pseudoalteromonas atlantica T6c hypothetical protein YP_663416.1 4657088 D 342610 CDS YP_663417.1 109900162 4175643 4658013..4658831 1 NC_008228.1 PFAM: Peptidoglycan-binding LysM peptidase M23B; KEGG: cps:CPS_1078 putative lipoprotein NlpD; peptidase M23B 4658831 4175643 Patl_3863 Pseudoalteromonas atlantica T6c peptidase M23B YP_663417.1 4658013 D 342610 CDS YP_663418.1 109900163 4175644 4658897..4659880 1 NC_008228.1 TIGRFAM: RNA polymerase sigma factor RpoS; PFAM: sigma-70 region 3 sigma-70 region 2 sigma-70 region 4 sigma-70 region 1.2; KEGG: ppr:PBPRA3071 putative RNA polymerase sigma-38 factor; RNA polymerase subunit sigma 28 4659880 4175644 Patl_3864 Pseudoalteromonas atlantica T6c RNA polymerase subunit sigma 28 YP_663418.1 4658897 D 342610 CDS YP_663419.1 109900164 4175645 complement(4659969..4660379) 1 NC_008228.1 PFAM: Late embryogenesis abundant protein; KEGG: cel:K08H10.1 Hypothetical protein K08H10.1; late embryogenesis abundant protein 4660379 4175645 Patl_3865 Pseudoalteromonas atlantica T6c late embryogenesis abundant protein YP_663419.1 4659969 R 342610 CDS YP_663420.1 109900165 4175646 4661058..4661654 1 NC_008228.1 KEGG: nmu:Nmul_A0564 possible transmembrane protein; putative transmembrane protein 4661654 4175646 Patl_3866 Pseudoalteromonas atlantica T6c putative transmembrane protein YP_663420.1 4661058 D 342610 CDS YP_663421.1 109900166 4175647 4661821..4662153 1 NC_008228.1 PFAM: SEC-C motif; KEGG: vfi:VF1407 hypothetical protein; SecC motif-containing protein 4662153 4175647 Patl_3867 Pseudoalteromonas atlantica T6c SecC motif-containing protein YP_663421.1 4661821 D 342610 CDS YP_663422.1 109900167 4175648 complement(4662204..4662956) 1 NC_008228.1 PFAM: PHP-like; SMART: Phosphoesterase PHP-like; KEGG: ppr:PBPRB2022 conserved hypothetical protein; putative hydrolase 4662956 4175648 Patl_3868 Pseudoalteromonas atlantica T6c putative hydrolase YP_663422.1 4662204 R 342610 CDS YP_663423.1 109900168 4175649 4663366..4663803 1 NC_008228.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: psp:PSPPH_1477 cytosine deaminase; cytosine deaminase 4663803 4175649 Patl_3869 Pseudoalteromonas atlantica T6c cytosine deaminase YP_663423.1 4663366 D 342610 CDS YP_663424.1 109900169 4175650 4663917..4664381 1 NC_008228.1 hypothetical protein 4664381 4175650 Patl_3870 Pseudoalteromonas atlantica T6c hypothetical protein YP_663424.1 4663917 D 342610 CDS YP_663425.1 109900170 4175651 4664383..4664595 1 NC_008228.1 PFAM: helix-turn-helix motif; KEGG: tko:TK1339 predicted transcription regulator, containing DNA-binding HTH domain; XRE family transcriptional regulator 4664595 4175651 Patl_3871 Pseudoalteromonas atlantica T6c XRE family transcriptional regulator YP_663425.1 4664383 D 342610 CDS YP_663426.1 109900171 4175652 complement(4664747..4666309) 1 NC_008228.1 PFAM: GCN5-related N-acetyltransferase Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: hch:HCH_04040 predicted amidohydrolase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 4666309 4175652 Patl_3872 Pseudoalteromonas atlantica T6c nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_663426.1 4664747 R 342610 CDS YP_663427.1 109900172 4175653 4666842..4668770 1 NC_008228.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 4668770 4175653 Patl_3873 Pseudoalteromonas atlantica T6c arginine decarboxylase YP_663427.1 4666842 D 342610 CDS YP_663428.1 109900173 4175654 complement(4668845..4669924) 1 NC_008228.1 PFAM: beta-lactamase; KEGG: cps:CPS_1414 putative beta-lactamase; beta-lactamase 4669924 4175654 Patl_3874 Pseudoalteromonas atlantica T6c beta-lactamase YP_663428.1 4668845 R 342610 CDS YP_663429.1 109900174 4175655 4670287..4671660 1 NC_008228.1 PFAM: helix-turn-helix, AraC type Ada, metal-binding AlkA-like; KEGG: vpa:VPA0045 ada regulatory protein; AraC family transcriptional regulator 4671660 4175655 Patl_3875 Pseudoalteromonas atlantica T6c AraC family transcriptional regulator YP_663429.1 4670287 D 342610 CDS YP_663430.1 109900175 4175656 4671660..4672163 1 NC_008228.1 KEGG: vvu:VV21209 methylated DNA-protein cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase 4672163 4175656 Patl_3876 Pseudoalteromonas atlantica T6c methylated-DNA--protein-cysteine methyltransferase YP_663430.1 4671660 D 342610 CDS YP_663431.1 109900176 4175657 4672182..4673084 1 NC_008228.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: rso:RSc2507 probable transmembrane protein; hypothetical protein 4673084 4175657 Patl_3877 Pseudoalteromonas atlantica T6c hypothetical protein YP_663431.1 4672182 D 342610 CDS YP_663432.1 109900177 4175658 complement(4673172..4674596) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: son:SO4457 GGDEF domain protein; diguanylate cyclase 4674596 4175658 Patl_3878 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_663432.1 4673172 R 342610 CDS YP_663433.1 109900178 4175659 4674986..4676347 1 NC_008228.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat Nucleotidyl transferase; KEGG: pha:PSHAa3006 bifunctional: N-acetyl glucosamine-1-phosphate uridyltransferase (N-terminal); glucosamine-1-phosphate acetyl transferase (C-terminal); UDP-N-acetylglucosamine pyrophosphorylase 4676347 4175659 Patl_3879 Pseudoalteromonas atlantica T6c UDP-N-acetylglucosamine pyrophosphorylase YP_663433.1 4674986 D 342610 CDS YP_663434.1 109900179 4175660 4676420..4677250 1 NC_008228.1 PFAM: regulatory protein, DeoR Helix-turn-helix, type 11; KEGG: son:SO4742 transcriptional regulator, DeoR family; DeoR family transcriptional regulator 4677250 4175660 Patl_3880 Pseudoalteromonas atlantica T6c DeoR family transcriptional regulator YP_663434.1 4676420 D 342610 CDS YP_663435.1 109900180 4175661 4677254..4679086 1 NC_008228.1 TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase, class-II sugar isomerase (SIS); KEGG: ilo:IL2616 glucosamine-fructose-6-phosphate aminotransferase; glucosamine--fructose-6-phosphate aminotransferase 4679086 4175661 Patl_3881 Pseudoalteromonas atlantica T6c glucosamine--fructose-6-phosphate aminotransferase YP_663435.1 4677254 D 342610 CDS YP_663436.1 109900181 4175662 complement(4679431..4680504) 1 NC_008228.1 PFAM: phosphate-selective porin O and P; KEGG: xcb:XC_1529 polyphosphate-selective porin O; phosphate-selective porin O and P 4680504 4175662 Patl_3882 Pseudoalteromonas atlantica T6c phosphate-selective porin O and P YP_663436.1 4679431 R 342610 CDS YP_663437.1 109900182 4175663 complement(4680524..4681510) 1 NC_008228.1 PFAM: aldo/keto reductase; KEGG: mag:amb0256 predicted oxidoreductase; aldo/keto reductase 4681510 4175663 Patl_3883 Pseudoalteromonas atlantica T6c aldo/keto reductase YP_663437.1 4680524 R 342610 CDS YP_663438.1 109900183 4175664 complement(4681539..4682477) 1 NC_008228.1 PFAM: oxidoreductase-like; KEGG: rpa:RPA4703 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase; oxidoreductase-like protein 4682477 4175664 Patl_3884 Pseudoalteromonas atlantica T6c oxidoreductase-like protein YP_663438.1 4681539 R 342610 CDS YP_663439.1 109900184 4175665 complement(4682487..4683326) 1 NC_008228.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit beta 4683326 4175665 Patl_3885 Pseudoalteromonas atlantica T6c protocatechuate 4,5-dioxygenase subunit beta YP_663439.1 4682487 R 342610 CDS YP_663440.1 109900185 4175666 complement(4683326..4683712) 1 NC_008228.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit alpha 4683712 4175666 Patl_3886 Pseudoalteromonas atlantica T6c protocatechuate 4,5-dioxygenase subunit alpha YP_663440.1 4683326 R 342610 CDS YP_663441.1 109900186 4175667 complement(4683722..4684630) 1 NC_008228.1 PFAM: amidohydrolase 2; KEGG: rpb:RPB_0874 amidohydrolase 2; amidohydrolase 2 4684630 4175667 Patl_3887 Pseudoalteromonas atlantica T6c amidohydrolase 2 YP_663441.1 4683722 R 342610 CDS YP_663442.1 109900187 4175668 complement(4684627..4685646) 1 NC_008228.1 PFAM: amidohydrolase 2; KEGG: xcb:XC_4121 4-oxalomesaconate hydratase; amidohydrolase 2 4685646 4175668 Patl_3888 Pseudoalteromonas atlantica T6c amidohydrolase 2 YP_663442.1 4684627 R 342610 CDS YP_663443.1 109900188 4175669 complement(4685714..4686811) 1 NC_008228.1 PFAM: protein of unknown function DUF453; KEGG: ppu:PP2513 hypothetical protein; hypothetical protein 4686811 4175669 Patl_3889 Pseudoalteromonas atlantica T6c hypothetical protein YP_663443.1 4685714 R 342610 CDS YP_663444.1 109900189 4175670 complement(4686814..4687500) 1 NC_008228.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: ppu:PP2514 hypothetical protein; hypothetical protein 4687500 4175670 Patl_3890 Pseudoalteromonas atlantica T6c hypothetical protein YP_663444.1 4686814 R 342610 CDS YP_663445.1 109900190 4175671 4687629..4688831 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: xoo:XOO4566 transcriptional regulator; LysR family transcriptional regulator 4688831 4175671 Patl_3891 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_663445.1 4687629 D 342610 CDS YP_663446.1 109900191 4175672 complement(4688845..4689726) 1 NC_008228.1 PFAM: helix-turn-helix, AraC type AraC protein, arabinose-binding/dimerisation; KEGG: bja:bll3668 transcriptional regulatory protein; AraC family transcriptional regulator 4689726 4175672 Patl_3892 Pseudoalteromonas atlantica T6c AraC family transcriptional regulator YP_663446.1 4688845 R 342610 CDS YP_663447.1 109900192 4175673 4689867..4691081 1 NC_008228.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase 4691081 4175673 Patl_3893 Pseudoalteromonas atlantica T6c 4-hydroxybenzoate 3-monooxygenase YP_663447.1 4689867 D 342610 CDS YP_663448.1 109900193 4175674 complement(4691875..4692963) 1 NC_008228.1 hypothetical protein 4692963 4175674 Patl_3894 Pseudoalteromonas atlantica T6c hypothetical protein YP_663448.1 4691875 R 342610 CDS YP_663449.1 109900194 4175675 complement(4693000..4694442) 1 NC_008228.1 PFAM: aldehyde dehydrogenase; KEGG: gme:Gmet_2131 aldehyde dehydrogenase; betaine aldehyde dehydrogenase 4694442 4175675 Patl_3895 Pseudoalteromonas atlantica T6c betaine aldehyde dehydrogenase YP_663449.1 4693000 R 342610 CDS YP_663450.1 109900195 4175676 4694531..4694776 1 NC_008228.1 hypothetical protein 4694776 4175676 Patl_3896 Pseudoalteromonas atlantica T6c hypothetical protein YP_663450.1 4694531 D 342610 CDS YP_663451.1 109900196 4175677 4694882..4696126 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: bur:Bcep18194_C7575 transcriptional regulator, LysR family; LysR family transcriptional regulator 4696126 4175677 Patl_3897 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_663451.1 4694882 D 342610 CDS YP_663452.1 109900197 4175678 complement(4696338..4698110) 1 NC_008228.1 PFAM: sigma-54 factor, interaction region helix-turn-helix, Fis-type 4-vinyl reductase, 4VR Activator of aromatic catabolism; SMART: ATPase; KEGG: reu:Reut_B5673 helix-turn-helix, fis-type; Fis family transcriptional regulator 4698110 4175678 Patl_3898 Pseudoalteromonas atlantica T6c Fis family transcriptional regulator YP_663452.1 4696338 R 342610 CDS YP_663453.1 109900198 4175679 4698619..4699737 1 NC_008228.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: ccr:CC2396 benzyl-alcohol dehydrogenase; zinc-binding alcohol dehydrogenase 4699737 4175679 Patl_3899 Pseudoalteromonas atlantica T6c zinc-binding alcohol dehydrogenase YP_663453.1 4698619 D 342610 CDS YP_663454.1 109900199 4175680 4699844..4700320 1 NC_008228.1 KEGG: stt:t1449 hypothetical protein; hypothetical protein 4700320 4175680 Patl_3900 Pseudoalteromonas atlantica T6c hypothetical protein YP_663454.1 4699844 D 342610 CDS YP_663455.1 109900200 4175681 4700925..4703318 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: aci:ACIAD1534 putative TonB-dependent receptor protein (outer membrane salicin receptor); TonB-dependent receptor, plug 4703318 4175681 Patl_3901 Pseudoalteromonas atlantica T6c TonB-dependent receptor, plug YP_663455.1 4700925 D 342610 CDS YP_663456.1 109900201 4175682 4703334..4704272 1 NC_008228.1 PFAM: beta-lactamase-like; KEGG: ctc:CTC00902 putative hydrolase; beta-lactamase-like protein 4704272 4175682 Patl_3902 Pseudoalteromonas atlantica T6c beta-lactamase-like protein YP_663456.1 4703334 D 342610 CDS YP_663457.1 109900202 4175683 complement(4705190..4706650) 1 NC_008228.1 PFAM: sulfatase type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: cps:CPS_2368 putative N-acetylglucosamine-6-sulfatase; sulfatase 4706650 4175683 Patl_3903 Pseudoalteromonas atlantica T6c sulfatase YP_663457.1 4705190 R 342610 CDS YP_663458.1 109900203 4175684 complement(4706736..4709024) 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: pha:PSHAa2138 TonB-dependent receptor; TonB-dependent receptor 4709024 4175684 Patl_3904 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_663458.1 4706736 R 342610 CDS YP_663459.1 109900204 4175685 4709833..4710468 1 NC_008228.1 PFAM: regulatory protein, TetR; KEGG: cps:CPS_4876 transcriptional regulator, TetR family; TetR family transcriptional regulator 4710468 4175685 Patl_3905 Pseudoalteromonas atlantica T6c TetR family transcriptional regulator YP_663459.1 4709833 D 342610 CDS YP_663460.1 109900205 4175686 4710919..4711848 1 NC_008228.1 PFAM: beta-lactamase-like; KEGG: ctc:CTC00902 putative hydrolase; beta-lactamase-like protein 4711848 4175686 Patl_3906 Pseudoalteromonas atlantica T6c beta-lactamase-like protein YP_663460.1 4710919 D 342610 CDS YP_663461.1 109900206 4175687 4712685..4714154 1 NC_008228.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: FAD linked oxidase-like; KEGG: yps:YPTB1469 putative oxidoreductase; twin-arginine translocation pathway signal protein 4714154 4175687 Patl_3907 Pseudoalteromonas atlantica T6c twin-arginine translocation pathway signal protein YP_663461.1 4712685 D 342610 CDS YP_663462.1 109900207 4175688 4714192..4714515 1 NC_008228.1 PFAM: cytochrome c, class I; KEGG: hch:HCH_04415 cytochrome c553; cytochrome c, class I 4714515 4175688 Patl_3908 Pseudoalteromonas atlantica T6c cytochrome c, class I YP_663462.1 4714192 D 342610 CDS YP_663463.1 109900208 4175689 4714577..4715029 1 NC_008228.1 hypothetical protein 4715029 4175689 Patl_3909 Pseudoalteromonas atlantica T6c hypothetical protein YP_663463.1 4714577 D 342610 CDS YP_663464.1 109900209 4175690 complement(4715548..4716150) 1 NC_008228.1 KEGG: cps:CPS_1881 hypothetical protein; hypothetical protein 4716150 4175690 Patl_3910 Pseudoalteromonas atlantica T6c hypothetical protein YP_663464.1 4715548 R 342610 CDS YP_663465.1 109900210 4175691 complement(4716400..4717119) 1 NC_008228.1 PFAM: PaaX-like-like; KEGG: bpm:BURPS1710b_0283 putative phenylacetic acid degradation operon negative regulatory protein; PaaX-like protein 4717119 4175691 Patl_3911 Pseudoalteromonas atlantica T6c PaaX-like protein YP_663465.1 4716400 R 342610 CDS YP_663466.1 109900211 4175692 4717545..4719191 1 NC_008228.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: pae:PA3972 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase-like protein 4719191 4175692 Patl_3912 Pseudoalteromonas atlantica T6c acyl-CoA dehydrogenase-like protein YP_663466.1 4717545 D 342610 CDS YP_663467.1 109900212 4175693 4719461..4720165 1 NC_008228.1 KEGG: son:SO2794 hypothetical protein; hypothetical protein 4720165 4175693 Patl_3913 Pseudoalteromonas atlantica T6c hypothetical protein YP_663467.1 4719461 D 342610 CDS YP_663468.1 109900213 4175694 complement(4720203..4722959) 1 NC_008228.1 TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: noc:Noc_0226 PAS sensor diguanylate cyclase and phophodiesterase; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4722959 4175694 Patl_3914 Pseudoalteromonas atlantica T6c PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_663468.1 4720203 R 342610 CDS YP_663469.1 109900214 4175695 4723477..4725996 1 NC_008228.1 PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: vch:VC1349 sensory box sensor histidine kinase/response regulator; periplasmic sensor hybrid histidine kinase 4725996 4175695 Patl_3915 Pseudoalteromonas atlantica T6c periplasmic sensor hybrid histidine kinase YP_663469.1 4723477 D 342610 CDS YP_663470.1 109900215 4175696 complement(4726066..4726959) 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pha:PSHAa1468 transcriptional activator protein, LysR; LysR family transcriptional regulator 4726959 4175696 Patl_3916 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_663470.1 4726066 R 342610 CDS YP_663471.1 109900216 4175697 complement(4727087..4727905) 1 NC_008228.1 PFAM: beta-lactamase-like; KEGG: vpa:VPA0171 hypothetical protein; beta-lactamase-like protein 4727905 4175697 Patl_3917 Pseudoalteromonas atlantica T6c beta-lactamase-like protein YP_663471.1 4727087 R 342610 CDS YP_663472.1 109900217 4175698 4728101..4728697 1 NC_008228.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase 4728697 4175698 Patl_3918 Pseudoalteromonas atlantica T6c NTPase YP_663472.1 4728101 D 342610 CDS YP_663473.1 109900218 4175699 complement(4728746..4730998) 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: pha:PSHAa0627 sensor histidine kinase; sensor signal transduction histidine kinase 4730998 4175699 Patl_3919 Pseudoalteromonas atlantica T6c sensor signal transduction histidine kinase YP_663473.1 4728746 R 342610 CDS YP_663474.1 109900219 4175700 complement(4731004..4731717) 1 NC_008228.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: cps:CPS_3982 DNA-binding response regulator; two component transcriptional regulator 4731717 4175700 Patl_3920 Pseudoalteromonas atlantica T6c two component transcriptional regulator YP_663474.1 4731004 R 342610 CDS YP_663475.1 109900220 4175701 4731949..4732773 1 NC_008228.1 PFAM: OmpA/MotB; KEGG: ppr:PBPRB0759 hypothetical OmpA family protein; OmpA/MotB protein 4732773 4175701 Patl_3921 Pseudoalteromonas atlantica T6c OmpA/MotB protein YP_663475.1 4731949 D 342610 CDS YP_663476.1 109900221 4175702 4733082..4735187 1 NC_008228.1 PFAM: von Willebrand factor, type A Vault protein inter-alpha-trypsin; SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: ret:RHE_CH03000 hypothetical protein; vault protein inter-alpha-trypsin 4735187 4175702 Patl_3922 Pseudoalteromonas atlantica T6c vault protein inter-alpha-trypsin YP_663476.1 4733082 D 342610 CDS YP_663477.1 109900222 4175703 4735184..4735900 1 NC_008228.1 TIGRFAM: sortase family protein; PFAM: peptidase C60, sortase A and B; KEGG: son:SO2196 LPXTG-site transpeptidase family protein; sortase family protein 4735900 4175703 Patl_3923 Pseudoalteromonas atlantica T6c sortase family protein YP_663477.1 4735184 D 342610 CDS YP_663478.1 109900223 4175704 4736112..4736573 1 NC_008228.1 hypothetical protein 4736573 4175704 Patl_3924 Pseudoalteromonas atlantica T6c hypothetical protein YP_663478.1 4736112 D 342610 CDS YP_663479.1 109900224 4175705 4736705..4738138 1 NC_008228.1 PFAM: putative esterase; KEGG: ilo:IL2088 predicted hydrolase of the alpha/beta superfamily; putative esterase 4738138 4175705 Patl_3925 Pseudoalteromonas atlantica T6c putative esterase YP_663479.1 4736705 D 342610 CDS YP_663480.1 109900225 4175706 complement(4738169..4738759) 1 NC_008228.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: rba:RB8432 probable fusion protein; carboxymuconolactone decarboxylase 4738759 4175706 Patl_3926 Pseudoalteromonas atlantica T6c carboxymuconolactone decarboxylase YP_663480.1 4738169 R 342610 CDS YP_663481.1 109900226 4175707 4739036..4739995 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: son:SO3802 ABC transporter, ATP-binding protein; ABC transporter-like protein 4739995 4175707 Patl_3927 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_663481.1 4739036 D 342610 CDS YP_663482.1 109900227 4175708 4739988..4740758 1 NC_008228.1 PFAM: ABC-2 type transporter; KEGG: pha:PSHAa2296 ABC-type transport system, permease component; ABC transporter 4740758 4175708 Patl_3928 Pseudoalteromonas atlantica T6c ABC transporter YP_663482.1 4739988 D 342610 CDS YP_663483.1 109900228 4175709 4740773..4741450 1 NC_008228.1 PFAM: putative methyltransferase; KEGG: pha:PSHAa2295 methyltransferase SAM dependent; putative methyltransferase 4741450 4175709 Patl_3929 Pseudoalteromonas atlantica T6c putative methyltransferase YP_663483.1 4740773 D 342610 CDS YP_663484.1 109900229 4175710 complement(4741496..4742221) 1 NC_008228.1 PFAM: EAL; KEGG: pha:PSHAa2294 hypothetical protein; diguanylate phosphodiesterase 4742221 4175710 Patl_3930 Pseudoalteromonas atlantica T6c diguanylate phosphodiesterase YP_663484.1 4741496 R 342610 CDS YP_663485.1 109900230 4175711 4742442..4744052 1 NC_008228.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: cps:CPS_1007 putative decarboxylase; pyridoxal-dependent decarboxylase 4744052 4175711 Patl_3931 Pseudoalteromonas atlantica T6c pyridoxal-dependent decarboxylase YP_663485.1 4742442 D 342610 CDS YP_663486.1 109900231 4175712 complement(4744134..4744985) 1 NC_008228.1 KEGG: son:SO0869 pantoate--beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase cytidyltransferase-related domain; PFAM: Pantoate-beta-alanine ligase; pantoate--beta-alanine ligase 4744985 4175712 Patl_3932 Pseudoalteromonas atlantica T6c pantoate--beta-alanine ligase YP_663486.1 4744134 R 342610 CDS YP_663487.1 109900232 4175713 complement(4744993..4745790) 1 NC_008228.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 4745790 panB 4175713 panB Pseudoalteromonas atlantica T6c 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_663487.1 4744993 R 342610 CDS YP_663488.1 109900233 4175714 complement(4745877..4746365) 1 NC_008228.1 KEGG: vvy:VV2762 7;8-dihydro-6-hydroxymethylpterin- pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 4746365 4175714 Patl_3934 Pseudoalteromonas atlantica T6c 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_663488.1 4745877 R 342610 CDS YP_663489.1 109900234 4175715 complement(4746362..4747609) 1 NC_008228.1 TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: eca:ECA3319 poly(A) polymerase; poly(A) polymerase 4747609 4175715 Patl_3935 Pseudoalteromonas atlantica T6c poly(A) polymerase YP_663489.1 4746362 R 342610 CDS YP_663490.1 109900235 4175716 complement(4747817..4748734) 1 NC_008228.1 PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: vvy:VV2760 glutamyl-tRNA synthetase; glutamate--tRNA ligase 4748734 4175716 Patl_3936 Pseudoalteromonas atlantica T6c glutamate--tRNA ligase YP_663490.1 4747817 R 342610 CDS YP_663491.1 109900236 4175717 complement(4748799..4749248) 1 NC_008228.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: ilo:IL2250 DnaK; TraR/DksA family transcriptional regulator 4749248 4175717 Patl_3937 Pseudoalteromonas atlantica T6c TraR/DksA family transcriptional regulator YP_663491.1 4748799 R 342610 CDS YP_663492.1 109900237 4175718 complement(4749415..4750119) 1 NC_008228.1 PFAM: sugar fermentation stimulation protein; KEGG: sgl:SG0493 sugar fermentation stimulation protein; sugar fermentation stimulation protein 4750119 4175718 Patl_3938 Pseudoalteromonas atlantica T6c sugar fermentation stimulation protein YP_663492.1 4749415 R 342610 CDS YP_663493.1 109900238 4175719 4750187..4751470 1 NC_008228.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B 4751470 4175719 Patl_3939 Pseudoalteromonas atlantica T6c aminopeptidase B YP_663493.1 4750187 D 342610 CDS YP_663494.1 109900239 4175720 complement(4751570..4751752) 1 NC_008228.1 hypothetical protein 4751752 4175720 Patl_3940 Pseudoalteromonas atlantica T6c hypothetical protein YP_663494.1 4751570 R 342610 CDS YP_663495.1 109900240 4175721 4751982..4752572 1 NC_008228.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: son:SO0129 conserved hypothetical protein TIGR00427; multiple antibiotic resistance (MarC)-like protein 4752572 4175721 Patl_3941 Pseudoalteromonas atlantica T6c multiple antibiotic resistance (MarC)-like protein YP_663495.1 4751982 D 342610 CDS YP_663496.1 109900241 4175722 4752595..4753185 1 NC_008228.1 PFAM: protein of unknown function DUF416; KEGG: cps:CPS_0153 hypothetical protein; hypothetical protein 4753185 4175722 Patl_3942 Pseudoalteromonas atlantica T6c hypothetical protein YP_663496.1 4752595 D 342610 CDS YP_663497.1 109900242 4175723 complement(4753232..4753816) 1 NC_008228.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: pha:PSHAa0353 enzyme with N-6 adenine-specific DNA methylase domain; putative methyltransferase 4753816 4175723 Patl_3943 Pseudoalteromonas atlantica T6c putative methyltransferase YP_663497.1 4753232 R 342610 CDS YP_663498.1 109900243 4175724 4753901..4755358 1 NC_008228.1 KEGG: sbo:SBO_3461 cell division membrane protein; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G-domain; SMART: ATPase; signal recognition particle-docking protein FtsY 4755358 4175724 Patl_3944 Pseudoalteromonas atlantica T6c signal recognition particle-docking protein FtsY YP_663498.1 4753901 D 342610 CDS YP_663499.1 109900244 4175725 4755430..4756104 1 NC_008228.1 KEGG: ilo:IL0227 FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: ATPase; cell division ATP-binding protein FtsE 4756104 4175725 Patl_3945 Pseudoalteromonas atlantica T6c cell division ATP-binding protein FtsE YP_663499.1 4755430 D 342610 CDS YP_663500.1 109900245 4175726 4756175..4757155 1 NC_008228.1 PFAM: protein of unknown function DUF214; KEGG: pha:PSHAa0356 cell division protein; hypothetical protein 4757155 4175726 Patl_3946 Pseudoalteromonas atlantica T6c hypothetical protein YP_663500.1 4756175 D 342610 CDS YP_663501.1 109900246 4175727 complement(4757226..4758467) 1 NC_008228.1 PFAM: EAL; KEGG: cps:CPS_3464 EAL domain protein; diguanylate phosphodiesterase 4758467 4175727 Patl_3947 Pseudoalteromonas atlantica T6c diguanylate phosphodiesterase YP_663501.1 4757226 R 342610 CDS YP_663502.1 109900247 4175728 4758981..4759850 1 NC_008228.1 TIGRFAM: RNA polymerase sigma factor RpoH; PFAM: sigma-70 region 2 sigma-70 region 4; KEGG: cps:CPS_0161 RNA polymerase sigma-32 factor; RNA polymerase sigma-32 subunit RpoH 4759850 4175728 Patl_3948 Pseudoalteromonas atlantica T6c RNA polymerase sigma-32 subunit RpoH YP_663502.1 4758981 D 342610 CDS YP_663503.1 109900248 4175729 complement(4759935..4760861) 1 NC_008228.1 TIGRFAM: thioesterase domain, putative; PFAM: GCN5-related N-acetyltransferase; KEGG: ilo:IL2449 acetyltransferase, GNAT family fused to PaaI related uncharacterized conserved domain; thioesterase domain-containing protein 4760861 4175729 Patl_3949 Pseudoalteromonas atlantica T6c thioesterase domain-containing protein YP_663503.1 4759935 R 342610 CDS YP_663504.1 109900249 4175730 complement(4760957..4761394) 1 NC_008228.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 4761394 4175730 Patl_3950 Pseudoalteromonas atlantica T6c D-tyrosyl-tRNA(Tyr) deacylase YP_663504.1 4760957 R 342610 CDS YP_663505.1 109900250 4175731 complement(4761391..4762359) 1 NC_008228.1 KEGG: pfo:Pfl_0371 peptidase S33, proline iminopeptidase 1; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase 4762359 4175731 Patl_3951 Pseudoalteromonas atlantica T6c proline iminopeptidase YP_663505.1 4761391 R 342610 CDS YP_663506.1 109900251 4175732 4762454..4762681 1 NC_008228.1 KEGG: pha:PSHAa0123 hypothetical protein; hypothetical protein 4762681 4175732 Patl_3952 Pseudoalteromonas atlantica T6c hypothetical protein YP_663506.1 4762454 D 342610 CDS YP_663507.1 109900252 4175733 4762702..4763340 1 NC_008228.1 KEGG: son:SO4403 hypothetical protein; hypothetical protein 4763340 4175733 Patl_3953 Pseudoalteromonas atlantica T6c hypothetical protein YP_663507.1 4762702 D 342610 CDS YP_663508.1 109900253 4175734 complement(4763354..4764256) 1 NC_008228.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 4764256 rbn 4175734 rbn Pseudoalteromonas atlantica T6c ribonuclease BN YP_663508.1 4763354 R 342610 CDS YP_663509.1 109900254 4175735 complement(4764293..4765177) 1 NC_008228.1 KEGG: hin:HI1444 510 methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 4765177 4175735 Patl_3955 Pseudoalteromonas atlantica T6c 5,10-methylenetetrahydrofolate reductase YP_663509.1 4764293 R 342610 CDS YP_663510.1 109900255 4175736 4765324..4765647 1 NC_008228.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 4765647 4175736 Patl_3956 Pseudoalteromonas atlantica T6c transcriptional repressor protein MetJ YP_663510.1 4765324 D 342610 CDS YP_663511.1 109900256 4175737 complement(4765751..4766416) 1 NC_008228.1 PFAM: glutathione S-transferase-like; KEGG: bur:Bcep18194_B2249 glutathione S-transferase-like; glutathione S-transferase-like protein 4766416 4175737 Patl_3957 Pseudoalteromonas atlantica T6c glutathione S-transferase-like protein YP_663511.1 4765751 R 342610 CDS YP_663512.1 109900257 4175738 complement(4766572..4766898) 1 NC_008228.1 PFAM: cytochrome c, class I; KEGG: cps:CPS_0313 cytochrome c552; cytochrome c, class I 4766898 4175738 Patl_3958 Pseudoalteromonas atlantica T6c cytochrome c, class I YP_663512.1 4766572 R 342610 CDS YP_663513.1 109900258 4175739 4766965..4768407 1 NC_008228.1 PFAM: protein of unknown function UPF0061; KEGG: vpa:VP0909 hypothetical protein; hypothetical protein 4768407 4175739 Patl_3959 Pseudoalteromonas atlantica T6c hypothetical protein YP_663513.1 4766965 D 342610 CDS YP_663514.1 109900259 4175740 4768536..4771433 1 NC_008228.1 TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: hch:HCH_05755 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4771433 4175740 Patl_3960 Pseudoalteromonas atlantica T6c PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_663514.1 4768536 D 342610 CDS YP_663515.1 109900260 4175741 4771522..4772136 1 NC_008228.1 PFAM: GTP cyclohydrolase II; KEGG: vpa:VPA0006 GTP cyclohydrolase II; GTP cyclohydrolase II 4772136 4175741 Patl_3961 Pseudoalteromonas atlantica T6c GTP cyclohydrolase II YP_663515.1 4771522 D 342610 CDS YP_663516.1 109900261 4175742 4772305..4773633 1 NC_008228.1 KEGG: son:SO4649 hypothetical protein; hypothetical protein 4773633 4175742 Patl_3962 Pseudoalteromonas atlantica T6c hypothetical protein YP_663516.1 4772305 D 342610 CDS YP_663517.1 109900262 4175743 complement(4773736..4774068) 1 NC_008228.1 hypothetical protein 4774068 4175743 Patl_3963 Pseudoalteromonas atlantica T6c hypothetical protein YP_663517.1 4773736 R 342610 CDS YP_663518.1 109900263 4175744 4774574..4775626 1 NC_008228.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: pca:Pcar_1018 peptidylarginine deiminase-related protein; peptidyl-arginine deiminase 4775626 4175744 Patl_3964 Pseudoalteromonas atlantica T6c peptidyl-arginine deiminase YP_663518.1 4774574 D 342610 CDS YP_663519.1 109900264 4175745 4775623..4776531 1 NC_008228.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bfs:BF2465 putative hydrolase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 4776531 4175745 Patl_3965 Pseudoalteromonas atlantica T6c nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_663519.1 4775623 D 342610 CDS YP_663520.1 109900265 4175746 complement(4776657..4777673) 1 NC_008228.1 catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 4777673 4175746 Patl_3966 Pseudoalteromonas atlantica T6c threonine dehydratase YP_663520.1 4776657 R 342610 CDS YP_663521.1 109900266 4175747 4777795..4778169 1 NC_008228.1 PFAM: protein of unknown function DUF1696; KEGG: son:SO3796 hypothetical protein; hypothetical protein 4778169 4175747 Patl_3967 Pseudoalteromonas atlantica T6c hypothetical protein YP_663521.1 4777795 D 342610 CDS YP_663522.1 109900267 4175748 complement(4778260..4780467) 1 NC_008228.1 PFAM: peptidase S15 peptidase S9, prolyl oligopeptidase active site region peptidase S9B, dipeptidylpeptidase IV-like; KEGG: pha:PSHAa2386 dipeptidyl peptidase IV; peptidase S9B, dipeptidylpeptidase IV-like 4780467 4175748 Patl_3968 Pseudoalteromonas atlantica T6c peptidase S9B, dipeptidylpeptidase IV-like YP_663522.1 4778260 R 342610 CDS YP_663523.1 109900268 4175749 4780531..4781181 1 NC_008228.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: gka:GK0979 semialdehyde dehydrogenase; NAD-dependent epimerase/dehydratase 4781181 4175749 Patl_3969 Pseudoalteromonas atlantica T6c NAD-dependent epimerase/dehydratase YP_663523.1 4780531 D 342610 CDS YP_663524.1 109900269 4175750 4781225..4782016 1 NC_008228.1 PFAM: methyltransferase small Methyltransferase type 12; KEGG: bth:BT0838 putative RNA methyltransferase; methyltransferase small 4782016 4175750 Patl_3970 Pseudoalteromonas atlantica T6c methyltransferase small YP_663524.1 4781225 D 342610 CDS YP_663525.1 109900270 4175751 4782130..4782507 1 NC_008228.1 hypothetical protein 4782507 4175751 Patl_3971 Pseudoalteromonas atlantica T6c hypothetical protein YP_663525.1 4782130 D 342610 CDS YP_663526.1 109900271 4175752 complement(4782584..4783777) 1 NC_008228.1 TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding Domain of unknown function DUF1730; KEGG: pha:PSHAa2485 4Fe-4S ferredoxin; putative iron-sulfur cluster binding protein 4783777 4175752 Patl_3972 Pseudoalteromonas atlantica T6c putative iron-sulfur cluster binding protein YP_663526.1 4782584 R 342610 CDS YP_663527.1 109900272 4175753 4783786..4785300 1 NC_008228.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031 YjeF-related protein-like; KEGG: ppr:PBPRA3355 hypothetical protein; carbohydrate kinase 4785300 4175753 Patl_3973 Pseudoalteromonas atlantica T6c carbohydrate kinase YP_663527.1 4783786 D 342610 CDS YP_663528.1 109900273 4175754 4785297..4785758 1 NC_008228.1 PFAM: protein of unknown function UPF0079; KEGG: ppr:PBPRA3354 putative nucleotide-binding protein; hypothetical protein 4785758 4175754 Patl_3974 Pseudoalteromonas atlantica T6c hypothetical protein YP_663528.1 4785297 D 342610 CDS YP_663529.1 109900274 4175755 4785800..4787092 1 NC_008228.1 PFAM: Peptidoglycan-binding LysM cell wall hydrolase/autolysin; KEGG: pha:PSHAa0268 N-acetylmuramoyl-L-alanine amidase II; N-acetylmuramoyl-L-alanine amidase 4787092 4175755 Patl_3975 Pseudoalteromonas atlantica T6c N-acetylmuramoyl-L-alanine amidase YP_663529.1 4785800 D 342610 CDS YP_663530.1 109900275 4175756 4787142..4789061 1 NC_008228.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region, ATPase-like DNA mismatch repair protein-like; KEGG: vvy:VV3073 DNA mismatch repair enzyme; DNA mismatch repair protein MutL 4789061 4175756 Patl_3976 Pseudoalteromonas atlantica T6c DNA mismatch repair protein MutL YP_663530.1 4787142 D 342610 CDS YP_663531.1 109900276 4175757 4789045..4789992 1 NC_008228.1 KEGG: son:SO0602 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 4789992 4175757 Patl_3977 Pseudoalteromonas atlantica T6c tRNA delta(2)-isopentenylpyrophosphate transferase YP_663531.1 4789045 D 342610 CDS YP_663532.1 109900277 4175758 4790072..4790323 1 NC_008228.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: eca:ECA3934 putative phage-related protein (host factor-I protein); RNA chaperone Hfq 4790323 4175758 Patl_3978 Pseudoalteromonas atlantica T6c RNA chaperone Hfq YP_663532.1 4790072 D 342610 CDS YP_663533.1 109900278 4175759 4790349..4791647 1 NC_008228.1 PFAM: GTP-binding protein, HSR1-related; KEGG: vpa:VP2816 GTP-binding protein HflX; HSR1-like GTP-binding protein 4791647 4175759 Patl_3979 Pseudoalteromonas atlantica T6c HSR1-like GTP-binding protein YP_663533.1 4790349 D 342610 CDS YP_663534.1 109900279 4175760 4791711..4792859 1 NC_008228.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: pha:PSHAa0273 hypothetical protein; HflK protein 4792859 4175760 Patl_3980 Pseudoalteromonas atlantica T6c HflK protein YP_663534.1 4791711 D 342610 CDS YP_663535.1 109900280 4175761 4792863..4793747 1 NC_008228.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: pha:PSHAa0274 hypothetical protein; HflC protein 4793747 4175761 Patl_3981 Pseudoalteromonas atlantica T6c HflC protein YP_663535.1 4792863 D 342610 CDS YP_663536.1 109900281 4175762 complement(4794102..4794533) 1 NC_008228.1 KEGG: pha:PSHAa1486 hypothetical protein; hypothetical protein 4794533 4175762 Patl_3982 Pseudoalteromonas atlantica T6c hypothetical protein YP_663536.1 4794102 R 342610 CDS YP_663537.1 109900282 4175763 complement(4794587..4795246) 1 NC_008228.1 PFAM: glutathione S-transferase-like; KEGG: hch:HCH_06415 glutathione S-transferase; glutathione S-transferase-like protein 4795246 4175763 Patl_3983 Pseudoalteromonas atlantica T6c glutathione S-transferase-like protein YP_663537.1 4794587 R 342610 CDS YP_663538.1 109900283 4175764 complement(4795260..4795868) 1 NC_008228.1 PFAM: glutathione S-transferase-like; KEGG: hch:HCH_06414 glutathione S-transferase; glutathione S-transferase-like protein 4795868 4175764 Patl_3984 Pseudoalteromonas atlantica T6c glutathione S-transferase-like protein YP_663538.1 4795260 R 342610 CDS YP_663539.1 109900284 4175765 complement(4795917..4797812) 1 NC_008228.1 PFAM: extracellular solute-binding protein, family 1; KEGG: hch:HCH_00071 ABC-type sugar transport system, periplasmic component; extracellular solute-binding protein 4797812 4175765 Patl_3985 Pseudoalteromonas atlantica T6c extracellular solute-binding protein YP_663539.1 4795917 R 342610 CDS YP_663540.1 109900285 4175766 complement(4798006..4798425) 1 NC_008228.1 KEGG: rba:RB9087 hypothetical protein-transmembrane prediction; hypothetical protein 4798425 4175766 Patl_3986 Pseudoalteromonas atlantica T6c hypothetical protein YP_663540.1 4798006 R 342610 CDS YP_663541.1 109900286 4175767 complement(4798425..4799507) 1 NC_008228.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 4799507 hemH 4175767 hemH Pseudoalteromonas atlantica T6c ferrochelatase YP_663541.1 4798425 R 342610 CDS YP_663542.1 109900287 4175768 complement(4799610..4801208) 1 NC_008228.1 PFAM: C4-dicarboxylate anaerobic carrier AbgT putative transporter; KEGG: pha:PSHAa0700 p-aminobenzoyl-glutamate transport protein (AbgT); AbgT transporter 4801208 4175768 Patl_3988 Pseudoalteromonas atlantica T6c AbgT transporter YP_663542.1 4799610 R 342610 CDS YP_663543.1 109900288 4175769 4801430..4801963 1 NC_008228.1 KEGG: ana:all3032 hypothetical protein; hypothetical protein 4801963 4175769 Patl_3989 Pseudoalteromonas atlantica T6c hypothetical protein YP_663543.1 4801430 D 342610 CDS YP_663544.1 109900289 4175770 4801972..4803729 1 NC_008228.1 PFAM: OmpA/MotB; KEGG: ana:all3031 OmpA-OmpF porin, OOP family; OmpA/MotB protein 4803729 4175770 Patl_3990 Pseudoalteromonas atlantica T6c OmpA/MotB protein YP_663544.1 4801972 D 342610 CDS YP_663545.1 109900290 4175771 4803747..4804250 1 NC_008228.1 KEGG: ana:all3030 similar to Ras family protein; TIGRFAM: small GTP-binding protein; PFAM: Miro-like Ras; SMART: Ras small GTPase, Ras type Ras small GTPase, Rab type; small GTP-binding protein 4804250 4175771 Patl_3991 Pseudoalteromonas atlantica T6c small GTP-binding protein YP_663545.1 4803747 D 342610 CDS YP_663546.1 109900291 4175772 4804247..4806403 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: psb:Psyr_4770 PAS:GGDEF; diguanylate cyclase/phosphodiesterase 4806403 4175772 Patl_3992 Pseudoalteromonas atlantica T6c diguanylate cyclase/phosphodiesterase YP_663546.1 4804247 D 342610 CDS YP_663547.1 109900292 4175773 complement(4806360..4807544) 1 NC_008228.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: ilo:IL0178 glutaryl-CoA dehydrogenase; glutaryl-CoA dehydrogenase 4807544 4175773 Patl_3993 Pseudoalteromonas atlantica T6c glutaryl-CoA dehydrogenase YP_663547.1 4806360 R 342610 CDS YP_663548.1 109900293 4175774 complement(4807609..4808661) 1 NC_008228.1 PFAM: aldo/keto reductase; KEGG: vfi:VFA0836 Tas protein; aldo/keto reductase 4808661 4175774 Patl_3994 Pseudoalteromonas atlantica T6c aldo/keto reductase YP_663548.1 4807609 R 342610 CDS YP_663549.1 109900294 4175775 complement(4808715..4809128) 1 NC_008228.1 hypothetical protein 4809128 4175775 Patl_3995 Pseudoalteromonas atlantica T6c hypothetical protein YP_663549.1 4808715 R 342610 CDS YP_663550.1 109900295 4175776 complement(4809741..4810925) 1 NC_008228.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 4810925 4175776 Patl_3996 Pseudoalteromonas atlantica T6c elongation factor Tu YP_663550.1 4809741 R 342610 CDS YP_663551.1 109900296 4175781 complement(4811511..4812251) 1 NC_008228.1 TIGRFAM: putative transcriptional activator, Baf family; KEGG: aci:ACIAD0840 putative transcriptional regulator; Baf family transcriptional activator 4812251 4175781 Patl_3997 Pseudoalteromonas atlantica T6c Baf family transcriptional activator YP_663551.1 4811511 R 342610 CDS YP_663552.1 109900297 4175782 complement(4812235..4813221) 1 NC_008228.1 KEGG: vpa:VP2931 BirA bifunctional protein; TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase-like biotin/lipoate A/B protein ligase Helix-turn-helix, type 11; biotin--acetyl-CoA-carboxylase ligase 4813221 4175782 Patl_3998 Pseudoalteromonas atlantica T6c biotin--acetyl-CoA-carboxylase ligase YP_663552.1 4812235 R 342610 CDS YP_663553.1 109900298 4175783 complement(4813218..4814255) 1 NC_008228.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 4814255 murB 4175783 murB Pseudoalteromonas atlantica T6c UDP-N-acetylenolpyruvoylglucosamine reductase YP_663553.1 4813218 R 342610 CDS YP_663554.1 109900299 4175784 complement(4814303..4816429) 1 NC_008228.1 PFAM: lipopolysaccharide biosynthesis; KEGG: vch:VC0937 exopolysaccharide biosynthesis protein, putative; protein-tyrosine kinase 4816429 4175784 Patl_4000 Pseudoalteromonas atlantica T6c protein-tyrosine kinase YP_663554.1 4814303 R 342610 CDS YP_663555.1 109900300 4175785 complement(4816432..4817010) 1 NC_008228.1 PFAM: polysaccharide export protein; KEGG: hch:HCH_04680 periplasmic protein involved in polysaccharide export; polysaccharide export protein 4817010 4175785 Patl_4001 Pseudoalteromonas atlantica T6c polysaccharide export protein YP_663555.1 4816432 R 342610 CDS YP_663556.1 109900301 4175786 complement(4817020..4818867) 1 NC_008228.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: plu:plu4809 WblM protein; polysaccharide biosynthesis protein CapD 4818867 4175786 Patl_4002 Pseudoalteromonas atlantica T6c polysaccharide biosynthesis protein CapD YP_663556.1 4817020 R 342610 CDS YP_663557.1 109900302 4175787 complement(4818864..4820042) 1 NC_008228.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: nma:NMA0638 pilin glycosylation protein; DegT/DnrJ/EryC1/StrS aminotransferase 4820042 4175787 Patl_4003 Pseudoalteromonas atlantica T6c DegT/DnrJ/EryC1/StrS aminotransferase YP_663557.1 4818864 R 342610 CDS YP_663558.1 109900303 4175788 complement(4820070..4820705) 1 NC_008228.1 KEGG: dps:DP0029 pilin glycosylation protein; pilin glycosylation protein 4820705 4175788 Patl_4004 Pseudoalteromonas atlantica T6c pilin glycosylation protein YP_663558.1 4820070 R 342610 CDS YP_663559.1 109900304 4175789 complement(4820695..4821315) 1 NC_008228.1 PFAM: sugar transferase; KEGG: eli:ELI_13365 putative UDP-galactose phosphate transferase; sugar transferase 4821315 4175789 Patl_4005 Pseudoalteromonas atlantica T6c sugar transferase YP_663559.1 4820695 R 342610 CDS YP_663560.1 109900305 4175790 complement(4821308..4822492) 1 NC_008228.1 PFAM: glycosyl transferase, group 1; KEGG: bja:bll3648 probable glycosyl transferase; group 1 glycosyl transferase 4822492 4175790 Patl_4006 Pseudoalteromonas atlantica T6c group 1 glycosyl transferase YP_663560.1 4821308 R 342610 CDS YP_663561.1 109900306 4175791 complement(4822489..4823661) 1 NC_008228.1 PFAM: glycosyl transferase, group 1; KEGG: pca:Pcar_1798 glycosyltransferase-like; group 1 glycosyl transferase 4823661 4175791 Patl_4007 Pseudoalteromonas atlantica T6c group 1 glycosyl transferase YP_663561.1 4822489 R 342610 CDS YP_663562.1 109900307 4175792 complement(4823667..4825025) 1 NC_008228.1 hypothetical protein 4825025 4175792 Patl_4008 Pseudoalteromonas atlantica T6c hypothetical protein YP_663562.1 4823667 R 342610 CDS YP_663563.1 109900308 4175793 complement(4825009..4826106) 1 NC_008228.1 PFAM: glycosyl transferase, group 1; KEGG: fra:Francci3_1310 glycosyl transferase, group 1; group 1 glycosyl transferase 4826106 4175793 Patl_4009 Pseudoalteromonas atlantica T6c group 1 glycosyl transferase YP_663563.1 4825009 R 342610 CDS YP_663564.1 109900309 4175794 complement(4826099..4827361) 1 NC_008228.1 KEGG: cef:CE0378 hypothetical protein; hypothetical protein 4827361 4175794 Patl_4010 Pseudoalteromonas atlantica T6c hypothetical protein YP_663564.1 4826099 R 342610 CDS YP_663565.1 109900310 4175795 complement(4827808..4828515) 1 NC_008228.1 hypothetical protein 4828515 4175795 Patl_4011 Pseudoalteromonas atlantica T6c hypothetical protein YP_663565.1 4827808 R 342610 CDS YP_663566.1 109900311 4175797 complement(4830363..4831019) 1 NC_008228.1 PFAM: carbonic anhydrase; KEGG: psb:Psyr_0288 carbonate dehydratase; carbonate dehydratase 4831019 4175797 Patl_4013 Pseudoalteromonas atlantica T6c carbonate dehydratase YP_663566.1 4830363 R 342610 CDS YP_663567.1 109900312 4175798 4831158..4832102 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: eli:ELI_02280 hydrogen peroxide-inducible genes activator protein; LysR family transcriptional regulator 4832102 4175798 Patl_4014 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_663567.1 4831158 D 342610 CDS YP_663568.1 109900313 4175804 4839129..4839584 1 NC_008228.1 PFAM: RNA-binding region RNP-1 (RNA recognition motif); KEGG: pha:PSHAa0253 hypothetical protein; RNA-binding region RNP-1 4839584 4175804 Patl_4015 Pseudoalteromonas atlantica T6c RNA-binding region RNP-1 YP_663568.1 4839129 D 342610 CDS YP_663569.1 109900314 4175805 complement(4839668..4840858) 1 NC_008228.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 4840858 4175805 Patl_4016 Pseudoalteromonas atlantica T6c aromatic amino acid aminotransferase YP_663569.1 4839668 R 342610 CDS YP_663570.1 109900315 4175806 complement(4840942..4841709) 1 NC_008228.1 PFAM: protein of unknown function DUF833; KEGG: gsu:GSU0792 hypothetical protein; hypothetical protein 4841709 4175806 Patl_4017 Pseudoalteromonas atlantica T6c hypothetical protein YP_663570.1 4840942 R 342610 CDS YP_663571.1 109900316 4175807 complement(4841735..4842721) 1 NC_008228.1 PFAM: Forkhead-associated; KEGG: cps:CPS_0481 FHA domain protein; FHA domain-containing protein 4842721 4175807 Patl_4018 Pseudoalteromonas atlantica T6c FHA domain-containing protein YP_663571.1 4841735 R 342610 CDS YP_663572.1 109900317 4175808 complement(4842712..4844049) 1 NC_008228.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: cps:CPS_0482 serine protease; peptidase S1 and S6, chymotrypsin/Hap 4844049 4175808 Patl_4019 Pseudoalteromonas atlantica T6c peptidase S1 and S6, chymotrypsin/Hap YP_663572.1 4842712 R 342610 CDS YP_663573.1 109900318 4175809 4844094..4844726 1 NC_008228.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: ilo:IL2144 acyltransferase family protein; phospholipid/glycerol acyltransferase 4844726 4175809 Patl_4020 Pseudoalteromonas atlantica T6c phospholipid/glycerol acyltransferase YP_663573.1 4844094 D 342610 CDS YP_663574.1 109900319 4175810 4844723..4845964 1 NC_008228.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: bbr:BB1977 hypothetical protein; hypothetical protein 4845964 4175810 Patl_4021 Pseudoalteromonas atlantica T6c hypothetical protein YP_663574.1 4844723 D 342610 CDS YP_663575.1 109900320 4175811 complement(4846057..4846452) 1 NC_008228.1 PFAM: OsmC-like protein; KEGG: neu:NE1136 putative redox protein; OsmC-like protein 4846452 4175811 Patl_4022 Pseudoalteromonas atlantica T6c OsmC-like protein YP_663575.1 4846057 R 342610 CDS YP_663576.1 109900321 4175812 complement(4846488..4847321) 1 NC_008228.1 KEGG: bth:BT2505 hypothetical protein; hypothetical protein 4847321 4175812 Patl_4023 Pseudoalteromonas atlantica T6c hypothetical protein YP_663576.1 4846488 R 342610 CDS YP_663577.1 109900322 4175813 4847494..4848351 1 NC_008228.1 PFAM: aminotransferase, class IV; KEGG: noc:Noc_2631 D-alanine transaminase; class IV aminotransferase 4848351 4175813 Patl_4024 Pseudoalteromonas atlantica T6c class IV aminotransferase YP_663577.1 4847494 D 342610 CDS YP_663578.1 109900323 4175814 4848361..4849488 1 NC_008228.1 KEGG: pae:PA4930 biosynthetic alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase-like; alanine racemase 4849488 4175814 Patl_4025 Pseudoalteromonas atlantica T6c alanine racemase YP_663578.1 4848361 D 342610 CDS YP_663579.1 109900324 4175815 complement(4849503..4850474) 1 NC_008228.1 TIGRFAM: putative methyltransferase; PFAM: methyltransferase, putative Methyltransferase type 11 Methyltransferase type 12; KEGG: pha:PSHAa1946 methyltransferase with S-adenosyl-L-methionine-dependent methyltransferase domain; putative methyltransferase 4850474 4175815 Patl_4026 Pseudoalteromonas atlantica T6c putative methyltransferase YP_663579.1 4849503 R 342610 CDS YP_663580.1 109900325 4175816 complement(4850510..4851241) 1 NC_008228.1 TIGRFAM: putative methyltransferase; PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: pha:PSHAa1945 methyltransferase with S-adenosyl-L-methionine-dependent methyltransferase domain; putative methyltransferase 4851241 4175816 Patl_4027 Pseudoalteromonas atlantica T6c putative methyltransferase YP_663580.1 4850510 R 342610 CDS YP_663581.1 109900326 4175817 4851513..4852151 1 NC_008228.1 PFAM: regulatory protein, LuxR response regulator receiver Bacterio-opsin activator, HTH Sigma-70, region 4 type 2; KEGG: pha:PSHAa0699 regulator in two-component regulatory system ; LuxR; two component LuxR family transcriptional regulator 4852151 4175817 Patl_4028 Pseudoalteromonas atlantica T6c two component LuxR family transcriptional regulator YP_663581.1 4851513 D 342610 CDS YP_663582.1 109900327 4175818 complement(4852228..4853727) 1 NC_008228.1 KEGG: pha:PSHAa0251 hypothetical protein; putative CheA signal transduction histidine kinase 4853727 4175818 Patl_4029 Pseudoalteromonas atlantica T6c putative CheA signal transduction histidine kinase YP_663582.1 4852228 R 342610 CDS YP_663583.1 109900328 4175819 4853810..4854907 1 NC_008228.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 4854907 4175819 Patl_4030 Pseudoalteromonas atlantica T6c tRNA (uracil-5-)-methyltransferase YP_663583.1 4853810 D 342610 CDS YP_663584.1 109900329 4175820 complement(4854904..4855503) 1 NC_008228.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 4855503 4175820 Patl_4031 Pseudoalteromonas atlantica T6c DNA-binding transcriptional repressor FabR YP_663584.1 4854904 R 342610 CDS YP_663585.1 109900330 4175821 4855663..4856790 1 NC_008228.1 PFAM: fatty acid desaturase; KEGG: ppr:PBPRB0742 hypothetical putative delta-9 fatty acid desaturase; stearoyl-CoA 9-desaturase 4856790 4175821 Patl_4032 Pseudoalteromonas atlantica T6c stearoyl-CoA 9-desaturase YP_663585.1 4855663 D 342610 CDS YP_663586.1 109900331 4175822 complement(4856980..4857306) 1 NC_008228.1 hypothetical protein 4857306 4175822 Patl_4033 Pseudoalteromonas atlantica T6c hypothetical protein YP_663586.1 4856980 R 342610 CDS YP_663587.1 109900332 4175823 4857485..4857994 1 NC_008228.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: vvy:VV3149 uracil-DNA glycosylase; uracil-DNA glycosylase superfamily protein 4857994 4175823 Patl_4034 Pseudoalteromonas atlantica T6c uracil-DNA glycosylase superfamily protein YP_663587.1 4857485 D 342610 CDS YP_663588.1 109900333 4175824 complement(4857998..4860238) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL response regulator receiver; KEGG: cps:CPS_0394 response regulator/GGDEF/EAL domain protein; response regulator receiver modulated diguanylate cyclase/phosphodiesterase 4860238 4175824 Patl_4035 Pseudoalteromonas atlantica T6c response regulator receiver modulated diguanylate cyclase/phosphodiesterase YP_663588.1 4857998 R 342610 CDS YP_663589.1 109900334 4175825 4860416..4861315 1 NC_008228.1 KEGG: cps:CPS_0395 hypothetical protein; hypothetical protein 4861315 4175825 Patl_4036 Pseudoalteromonas atlantica T6c hypothetical protein YP_663589.1 4860416 D 342610 CDS YP_663590.1 109900335 4175826 complement(4861312..4862082) 1 NC_008228.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: vch:VC0386 phosphoadenosine phosphosulfate reductase; phosphoadenosine phosphosulfate reductase 4862082 4175826 Patl_4037 Pseudoalteromonas atlantica T6c phosphoadenosine phosphosulfate reductase YP_663590.1 4861312 R 342610 CDS YP_663591.1 109900336 4175827 complement(4862075..4863784) 1 NC_008228.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 4863784 4175827 Patl_4038 Pseudoalteromonas atlantica T6c sulfite reductase subunit beta YP_663591.1 4862075 R 342610 CDS YP_663592.1 109900337 4175828 complement(4863784..4865616) 1 NC_008228.1 TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: oxidoreductase FAD/NAD(P)-binding FAD-binding flavodoxin/nitric oxide synthase; KEGG: cps:CPS_4759 sulfite reductase (NADPH) flavoprotein alpha-component; sulfite reductase (NADPH) flavoprotein subunit alpha 4865616 4175828 Patl_4039 Pseudoalteromonas atlantica T6c sulfite reductase (NADPH) flavoprotein subunit alpha YP_663592.1 4863784 R 342610 CDS YP_663593.1 109900338 4175829 complement(4865748..4866506) 1 NC_008228.1 KEGG: pha:PSHAa0505 hypothetical protein; hypothetical protein 4866506 4175829 Patl_4040 Pseudoalteromonas atlantica T6c hypothetical protein YP_663593.1 4865748 R 342610 CDS YP_663594.1 109900339 4175830 complement(4866510..4867496) 1 NC_008228.1 KEGG: pha:PSHAa0504 hypothetical protein; hypothetical protein 4867496 4175830 Patl_4041 Pseudoalteromonas atlantica T6c hypothetical protein YP_663594.1 4866510 R 342610 CDS YP_663595.1 109900340 4175831 complement(4867506..4867949) 1 NC_008228.1 PFAM: protein of unknown function DUF461; KEGG: tcx:Tcr_1566 protein of unknown function DUF461; hypothetical protein 4867949 4175831 Patl_4042 Pseudoalteromonas atlantica T6c hypothetical protein YP_663595.1 4867506 R 342610 CDS YP_663596.1 109900341 4175832 complement(4868065..4868544) 1 NC_008228.1 KEGG: cps:CPS_4753 hypothetical protein; hypothetical protein 4868544 4175832 Patl_4043 Pseudoalteromonas atlantica T6c hypothetical protein YP_663596.1 4868065 R 342610 CDS YP_663597.1 109900342 4175833 complement(4868685..4869344) 1 NC_008228.1 PFAM: PspA/IM30; KEGG: son:SO1807 phage shock protein A; phage shock protein A, PspA 4869344 4175833 Patl_4044 Pseudoalteromonas atlantica T6c phage shock protein A, PspA YP_663597.1 4868685 R 342610 CDS YP_663598.1 109900343 4175834 4869696..4869989 1 NC_008228.1 KEGG: hhe:HH0093 hypothetical protein; hypothetical protein 4869989 4175834 Patl_4045 Pseudoalteromonas atlantica T6c hypothetical protein YP_663598.1 4869696 D 342610 CDS YP_663599.1 109900344 4175835 4869994..4870689 1 NC_008228.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: rsp:RSP_3062 3-oxoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase SDR 4870689 4175835 Patl_4046 Pseudoalteromonas atlantica T6c short-chain dehydrogenase/reductase SDR YP_663599.1 4869994 D 342610 CDS YP_663600.1 109900345 4175836 4870686..4872029 1 NC_008228.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rsp:RSP_3063 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 4872029 4175836 Patl_4047 Pseudoalteromonas atlantica T6c AMP-dependent synthetase and ligase YP_663600.1 4870686 D 342610 CDS YP_663601.1 109900346 4175837 4872077..4872721 1 NC_008228.1 KEGG: dvu:DVUA0053 hypothetical protein; acetyltransferase 4872721 4175837 Patl_4048 Pseudoalteromonas atlantica T6c acetyltransferase YP_663601.1 4872077 D 342610 CDS YP_663602.1 109900347 4175838 4872739..4873791 1 NC_008228.1 hypothetical protein 4873791 4175838 Patl_4049 Pseudoalteromonas atlantica T6c hypothetical protein YP_663602.1 4872739 D 342610 CDS YP_663603.1 109900348 4175839 complement(4873981..4874259) 1 NC_008228.1 hypothetical protein 4874259 4175839 Patl_4050 Pseudoalteromonas atlantica T6c hypothetical protein YP_663603.1 4873981 R 342610 CDS YP_663604.1 109900349 4175840 complement(4874473..4875510) 1 NC_008228.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: vpa:VP2727 NifR3/Smm1 family protein; tRNA-dihydrouridine synthase A 4875510 4175840 Patl_4051 Pseudoalteromonas atlantica T6c tRNA-dihydrouridine synthase A YP_663604.1 4874473 R 342610 CDS YP_663605.1 109900350 4175841 complement(4875715..4876260) 1 NC_008228.1 KEGG: pha:PSHAb0186 hypothetical protein; hypothetical protein 4876260 4175841 Patl_4052 Pseudoalteromonas atlantica T6c hypothetical protein YP_663605.1 4875715 R 342610 CDS YP_663606.1 109900351 4175842 4876561..4877115 1 NC_008228.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: ava:Ava_1669 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like protein 4877115 4175842 Patl_4053 Pseudoalteromonas atlantica T6c pyridoxamine 5'-phosphate oxidase-like protein YP_663606.1 4876561 D 342610 CDS YP_663607.1 109900352 4175843 4877298..4877873 1 NC_008228.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: hch:HCH_05505 restriction endonuclease; HNH endonuclease 4877873 4175843 Patl_4054 Pseudoalteromonas atlantica T6c HNH endonuclease YP_663607.1 4877298 D 342610 CDS YP_663608.1 109900353 4175844 4877986..4878888 1 NC_008228.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0348 acyltransferase family protein; putative acyltransferase 4878888 4175844 Patl_4055 Pseudoalteromonas atlantica T6c putative acyltransferase YP_663608.1 4877986 D 342610 CDS YP_663609.1 109900354 4175845 4878892..4879788 1 NC_008228.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: vch:VC0033 hypothetical protein; putative acyltransferase 4879788 4175845 Patl_4056 Pseudoalteromonas atlantica T6c putative acyltransferase YP_663609.1 4878892 D 342610 CDS YP_663610.1 109900355 4175846 4879789..4881033 1 NC_008228.1 PFAM: MscS Mechanosensitive ion channel; KEGG: bfs:BF0722 putative transmembrane transport protein; mechanosensitive ion channel protein MscS 4881033 4175846 Patl_4057 Pseudoalteromonas atlantica T6c mechanosensitive ion channel protein MscS YP_663610.1 4879789 D 342610 CDS YP_663611.1 109900356 4175847 4881574..4882353 1 NC_008228.1 KEGG: cps:CPS_1542 hypothetical protein; hypothetical protein 4882353 4175847 Patl_4058 Pseudoalteromonas atlantica T6c hypothetical protein YP_663611.1 4881574 D 342610 CDS YP_663612.1 109900357 4175848 4882440..4883291 1 NC_008228.1 PFAM: NAD-dependent epimerase/dehydratase dTDP-4-dehydrorhamnose reductase; KEGG: ppr:PBPRA2429 hypothetical enzyme of sugar metabolism; dTDP-4-dehydrorhamnose reductase 4883291 4175848 Patl_4059 Pseudoalteromonas atlantica T6c dTDP-4-dehydrorhamnose reductase YP_663612.1 4882440 D 342610 CDS YP_663613.1 109900358 4175849 complement(4883361..4884782) 1 NC_008228.1 PFAM: sodium:neurotransmitter symporter; KEGG: pha:PSHAa1286 sodium-dependent transporter; sodium:neurotransmitter symporter 4884782 4175849 Patl_4060 Pseudoalteromonas atlantica T6c sodium:neurotransmitter symporter YP_663613.1 4883361 R 342610 CDS YP_663614.1 109900359 4175850 complement(4884923..4885684) 1 NC_008228.1 KEGG: cps:CPS_0516 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase/reductase family oxidoreductase 4885684 4175850 Patl_4061 Pseudoalteromonas atlantica T6c short chain dehydrogenase/reductase family oxidoreductase YP_663614.1 4884923 R 342610 CDS YP_663615.1 109900360 4175851 complement(4885681..4886106) 1 NC_008228.1 PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: ilo:IL2053 potential redox protein; putative thiol-disulfide oxidoreductase DCC 4886106 4175851 Patl_4062 Pseudoalteromonas atlantica T6c putative thiol-disulfide oxidoreductase DCC YP_663615.1 4885681 R 342610 CDS YP_663616.1 109900361 4175852 4886275..4886817 1 NC_008228.1 KEGG: cps:CPS_4817 peptide methionine sulfoxide reductase MsrA; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 4886817 4175852 Patl_4063 Pseudoalteromonas atlantica T6c peptide methionine sulfoxide reductase YP_663616.1 4886275 D 342610 CDS YP_663617.1 109900362 4175853 complement(4886814..4887992) 1 NC_008228.1 hypothetical protein 4887992 4175853 Patl_4064 Pseudoalteromonas atlantica T6c hypothetical protein YP_663617.1 4886814 R 342610 CDS YP_663618.1 109900363 4175854 complement(4888127..4891264) 1 NC_008228.1 PFAM: glycoside hydrolase, family 42, domain 5, loop region glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, TIM barrel glycoside hydrolase family 2, sugar binding; KEGG: tma:TM1193 beta-galactosidase; glycoside hydrolase 4891264 4175854 Patl_4065 Pseudoalteromonas atlantica T6c glycoside hydrolase YP_663618.1 4888127 R 342610 CDS YP_663619.1 109900364 4175855 4891556..4892017 1 NC_008228.1 hypothetical protein 4892017 4175855 Patl_4066 Pseudoalteromonas atlantica T6c hypothetical protein YP_663619.1 4891556 D 342610 CDS YP_663620.1 109900365 4175856 4892146..4892694 1 NC_008228.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic; flavodoxin FldB 4892694 4175856 Patl_4067 Pseudoalteromonas atlantica T6c flavodoxin FldB YP_663620.1 4892146 D 342610 CDS YP_663621.1 109900366 4175857 4892691..4893491 1 NC_008228.1 KEGG: pha:PSHAa1320 hypothetical protein; hypothetical protein 4893491 4175857 Patl_4068 Pseudoalteromonas atlantica T6c hypothetical protein YP_663621.1 4892691 D 342610 CDS YP_663622.1 109900367 4175858 4893888..4894295 1 NC_008228.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: son:SO1827 TonB system transport protein ExbD2; biopolymer transport protein ExbD/TolR 4894295 4175858 Patl_4069 Pseudoalteromonas atlantica T6c biopolymer transport protein ExbD/TolR YP_663622.1 4893888 D 342610 CDS YP_663623.1 109900368 4175859 complement(4894456..4894941) 1 NC_008228.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 4894941 4175859 Patl_4070 Pseudoalteromonas atlantica T6c ribonuclease activity regulator protein RraA YP_663623.1 4894456 R 342610 CDS YP_663624.1 109900369 4175860 4895148..4895657 1 NC_008228.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: vch:VC2488 hypothetical protein; PA-phosphatase-like phosphoesterase 4895657 4175860 Patl_4071 Pseudoalteromonas atlantica T6c PA-phosphatase-like phosphoesterase YP_663624.1 4895148 D 342610 CDS YP_663625.1 109900370 4175861 4895741..4896817 1 NC_008228.1 TIGRFAM: conserved hypothetical protein; KEGG: vch:VC2487 hypothetical protein; hypothetical protein 4896817 4175861 Patl_4072 Pseudoalteromonas atlantica T6c hypothetical protein YP_663625.1 4895741 D 342610 CDS YP_663626.1 109900371 4175862 4897152..4898399 1 NC_008228.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pha:PSHAa0093 diaminopimelate decarboxylase; diaminopimelate decarboxylase 4898399 4175862 Patl_4073 Pseudoalteromonas atlantica T6c diaminopimelate decarboxylase YP_663626.1 4897152 D 342610 CDS YP_663627.1 109900372 4175863 4898586..4899416 1 NC_008228.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 4899416 dapF 4175863 dapF Pseudoalteromonas atlantica T6c diaminopimelate epimerase YP_663627.1 4898586 D 342610 CDS YP_663628.1 109900373 4175864 4899413..4900111 1 NC_008228.1 PFAM: protein of unknown function DUF484; KEGG: ilo:IL2554 uncharacterized conserved protein, YigA-like; hypothetical protein 4900111 4175864 Patl_4075 Pseudoalteromonas atlantica T6c hypothetical protein YP_663628.1 4899413 D 342610 CDS YP_663629.1 109900374 4175865 4900127..4901023 1 NC_008228.1 PFAM: phage integrase phage integrase-like SAM-like; KEGG: ppr:PBPRA3520 putative integrase/recombinase XerC; phage integrase 4901023 4175865 Patl_4076 Pseudoalteromonas atlantica T6c phage integrase YP_663629.1 4900127 D 342610 CDS YP_663630.1 109900375 4175866 4901071..4901787 1 NC_008228.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: vpa:VP2980 hypothetical protein; HAD family hydrolase 4901787 4175866 Patl_4077 Pseudoalteromonas atlantica T6c HAD family hydrolase YP_663630.1 4901071 D 342610 CDS YP_663631.1 109900376 4175867 complement(4901884..4902663) 1 NC_008228.1 KEGG: pha:PSHAa0645 serine acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat serine acetyltransferase-like; serine O-acetyltransferase 4902663 4175867 Patl_4078 Pseudoalteromonas atlantica T6c serine O-acetyltransferase YP_663631.1 4901884 R 342610 CDS YP_663632.1 109900377 4175868 4902812..4904986 1 NC_008228.1 TIGRFAM: DNA helicase II; PFAM: UvrD/REP helicase; KEGG: sec:SC3850 DNA-dependent ATPase I and helicase II; DNA helicase II 4904986 4175868 Patl_4079 Pseudoalteromonas atlantica T6c DNA helicase II YP_663632.1 4902812 D 342610 CDS YP_663633.1 109900378 4175869 4905076..4906332 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein response regulator receiver; KEGG: hch:HCH_06018 response regulator containing a CheY-like receiver domain and a GGDEF domain; diguanylate cyclase 4906332 4175869 Patl_4080 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_663633.1 4905076 D 342610 CDS YP_663634.1 109900379 4175870 complement(4906352..4907272) 1 NC_008228.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: ilo:IL2549 conserved membrane protein RarD; transporter DMT superfamily protein 4907272 4175870 Patl_4081 Pseudoalteromonas atlantica T6c transporter DMT superfamily protein YP_663634.1 4906352 R 342610 CDS YP_663635.1 109900380 4175871 4907430..4907687 1 NC_008228.1 hypothetical protein 4907687 4175871 Patl_4082 Pseudoalteromonas atlantica T6c hypothetical protein YP_663635.1 4907430 D 342610 CDS YP_663636.1 109900381 4175872 4908063..4908635 1 NC_008228.1 KEGG: pha:PSHAa0583 hypothetical protein; hypothetical protein 4908635 4175872 Patl_4083 Pseudoalteromonas atlantica T6c hypothetical protein YP_663636.1 4908063 D 342610 CDS YP_663637.1 109900382 4175873 4908649..4909572 1 NC_008228.1 PFAM: formate/nitrite transporter; KEGG: par:Psyc_1851 formate/nitrite transporter family (FNT); formate/nitrite transporter 4909572 4175873 Patl_4084 Pseudoalteromonas atlantica T6c formate/nitrite transporter YP_663637.1 4908649 D 342610 CDS YP_663638.1 109900383 4175874 complement(4909660..4910055) 1 NC_008228.1 KEGG: pfo:Pfl_1447 hypothetical protein; hypothetical protein 4910055 4175874 Patl_4085 Pseudoalteromonas atlantica T6c hypothetical protein YP_663638.1 4909660 R 342610 CDS YP_663639.1 109900384 4175875 4910437..4910877 1 NC_008228.1 PFAM: Hemerythrin HHE cation binding region; KEGG: vpa:VP0084 hypothetical protein; hemerythrin HHE cation binding protein 4910877 4175875 Patl_4086 Pseudoalteromonas atlantica T6c hemerythrin HHE cation binding protein YP_663639.1 4910437 D 342610 CDS YP_663640.1 109900385 4175876 4910906..4911487 1 NC_008228.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: vfi:VFA0032 thioredoxin peroxidase; redoxin 4911487 4175876 Patl_4087 Pseudoalteromonas atlantica T6c redoxin YP_663640.1 4910906 D 342610 CDS YP_663641.1 109900386 4175877 4911731..4913353 1 NC_008228.1 PFAM: Dual specificity protein phosphatase diacylglycerol kinase, catalytic region; SMART: Protein tyrosine phosphatase, catalytic region; KEGG: vpa:VP0085 methylglyoxal synthase; hypothetical protein 4913353 4175877 Patl_4088 Pseudoalteromonas atlantica T6c hypothetical protein YP_663641.1 4911731 D 342610 CDS YP_663642.1 109900387 4175878 4913734..4914279 1 NC_008228.1 KEGG: ccr:CC1285 hypothetical protein; hypothetical protein 4914279 4175878 Patl_4089 Pseudoalteromonas atlantica T6c hypothetical protein YP_663642.1 4913734 D 342610 CDS YP_663643.1 109900388 4175879 4914379..4915428 1 NC_008228.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pha:PSHAa2557 mechanosensitive channel protein; mechanosensitive ion channel protein MscS 4915428 4175879 Patl_4090 Pseudoalteromonas atlantica T6c mechanosensitive ion channel protein MscS YP_663643.1 4914379 D 342610 CDS YP_663644.1 109900389 4175880 4915875..4916318 1 NC_008228.1 TIGRFAM: conserved hypothetical protein; KEGG: pha:PSHAa1823 hypothetical protein; hypothetical protein 4916318 4175880 Patl_4091 Pseudoalteromonas atlantica T6c hypothetical protein YP_663644.1 4915875 D 342610 CDS YP_663645.1 109900390 4175881 complement(4916543..4916842) 1 NC_008228.1 hypothetical protein 4916842 4175881 Patl_4092 Pseudoalteromonas atlantica T6c hypothetical protein YP_663645.1 4916543 R 342610 CDS YP_663646.1 109900391 4175882 complement(4917027..4918118) 1 NC_008228.1 hypothetical protein 4918118 4175882 Patl_4093 Pseudoalteromonas atlantica T6c hypothetical protein YP_663646.1 4917027 R 342610 CDS YP_663647.1 109900392 4175883 4918214..4918546 1 NC_008228.1 PFAM: conserved hypothetical protein; KEGG: cps:CPS_3577 GGDEF domain protein; diguanylate cyclase 4918546 4175883 Patl_4094 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_663647.1 4918214 D 342610 CDS YP_663648.1 109900393 4175884 complement(4918626..4919042) 1 NC_008228.1 KEGG: pha:PSHAa1701 hypothetical protein; hypothetical protein 4919042 4175884 Patl_4095 Pseudoalteromonas atlantica T6c hypothetical protein YP_663648.1 4918626 R 342610 CDS YP_663649.1 109900394 4175885 4919598..4921205 1 NC_008228.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: eba:ebA6339 modification methylase (cytosine-specific methyltransferase; DNA-cytosine methyltransferase 4921205 4175885 Patl_4096 Pseudoalteromonas atlantica T6c DNA-cytosine methyltransferase YP_663649.1 4919598 D 342610 CDS YP_663650.1 109900395 4175886 complement(4921386..4923176) 1 NC_008228.1 KEGG: hpj:jhp1287 rod shape-determining protein; hypothetical protein 4923176 4175886 Patl_4097 Pseudoalteromonas atlantica T6c hypothetical protein YP_663650.1 4921386 R 342610 CDS YP_663651.1 109900396 4175887 complement(4923198..4924622) 1 NC_008228.1 hypothetical protein 4924622 4175887 Patl_4098 Pseudoalteromonas atlantica T6c hypothetical protein YP_663651.1 4923198 R 342610 CDS YP_663652.1 109900397 4175888 complement(4924775..4926595) 1 NC_008228.1 PFAM: NERD; KEGG: mca:MCA0729 hypothetical protein; NERD domain-contain protein 4926595 4175888 Patl_4099 Pseudoalteromonas atlantica T6c NERD domain-contain protein YP_663652.1 4924775 R 342610 CDS YP_663653.1 109900398 4175889 complement(4926595..4928490) 1 NC_008228.1 KEGG: hch:HCH_05713 hypothetical protein; hypothetical protein 4928490 4175889 Patl_4100 Pseudoalteromonas atlantica T6c hypothetical protein YP_663653.1 4926595 R 342610 CDS YP_663654.1 109900399 4175890 complement(4928538..4931753) 1 NC_008228.1 PFAM: helicase-like; KEGG: sth:STH1306 putative DNA helicase; helicase-like protein 4931753 4175890 Patl_4101 Pseudoalteromonas atlantica T6c helicase-like protein YP_663654.1 4928538 R 342610 CDS YP_663655.1 109900400 4175891 complement(4931760..4934045) 1 NC_008228.1 KEGG: neu:NE0093 ATP-dependent DNA helicase; superfamily I DNA/RNA helicase-like protein 4934045 4175891 Patl_4102 Pseudoalteromonas atlantica T6c superfamily I DNA/RNA helicase-like protein YP_663655.1 4931760 R 342610 CDS YP_663656.1 109900401 4175892 complement(4934467..4936227) 1 NC_008228.1 PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: vpa:VP0880 hypothetical protein; type 12 methyltransferase 4936227 4175892 Patl_4103 Pseudoalteromonas atlantica T6c type 12 methyltransferase YP_663656.1 4934467 R 342610 CDS YP_663657.1 109900402 4175893 4936717..4937601 1 NC_008228.1 hypothetical protein 4937601 4175893 Patl_4104 Pseudoalteromonas atlantica T6c hypothetical protein YP_663657.1 4936717 D 342610 CDS YP_663658.1 109900403 4175894 complement(4937651..4938391) 1 NC_008228.1 PFAM: protein of unknown function DUF81; KEGG: pha:PSHAa2083 hypothetical protein ; membrane protein; hypothetical protein 4938391 4175894 Patl_4105 Pseudoalteromonas atlantica T6c hypothetical protein YP_663658.1 4937651 R 342610 CDS YP_663659.1 109900404 4175895 4938883..4940073 1 NC_008228.1 KEGG: hch:HCH_06070 hypothetical protein; hypothetical protein 4940073 4175895 Patl_4106 Pseudoalteromonas atlantica T6c hypothetical protein YP_663659.1 4938883 D 342610 CDS YP_663660.1 109900405 4175896 4940073..4940492 1 NC_008228.1 KEGG: vch:VC2455 hypothetical protein; hypothetical protein 4940492 4175896 Patl_4107 Pseudoalteromonas atlantica T6c hypothetical protein YP_663660.1 4940073 D 342610 CDS YP_663661.1 109900406 4175897 4940699..4941898 1 NC_008228.1 KEGG: hch:HCH_06070 hypothetical protein; hypothetical protein 4941898 4175897 Patl_4108 Pseudoalteromonas atlantica T6c hypothetical protein YP_663661.1 4940699 D 342610 CDS YP_663662.1 109900407 4175898 4941898..4942317 1 NC_008228.1 KEGG: eba:ebB54 hypothetical protein; hypothetical protein 4942317 4175898 Patl_4109 Pseudoalteromonas atlantica T6c hypothetical protein YP_663662.1 4941898 D 342610 CDS YP_663663.1 109900408 4175899 4942583..4943782 1 NC_008228.1 KEGG: hch:HCH_06070 hypothetical protein; hypothetical protein 4943782 4175899 Patl_4110 Pseudoalteromonas atlantica T6c hypothetical protein YP_663663.1 4942583 D 342610 CDS YP_663664.1 109900409 4175900 4943779..4944198 1 NC_008228.1 KEGG: vvy:VV2825 hypothetical protein; hypothetical protein 4944198 4175900 Patl_4111 Pseudoalteromonas atlantica T6c hypothetical protein YP_663664.1 4943779 D 342610 CDS YP_663665.1 109900410 4175901 4944296..4945498 1 NC_008228.1 KEGG: hch:HCH_06070 hypothetical protein; hypothetical protein 4945498 4175901 Patl_4112 Pseudoalteromonas atlantica T6c hypothetical protein YP_663665.1 4944296 D 342610 CDS YP_663666.1 109900411 4175902 4945498..4945914 1 NC_008228.1 KEGG: eba:ebB54 hypothetical protein; hypothetical protein 4945914 4175902 Patl_4113 Pseudoalteromonas atlantica T6c hypothetical protein YP_663666.1 4945498 D 342610 CDS YP_663667.1 109900412 4175903 complement(4945940..4947985) 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL histidine kinase, HAMP region; KEGG: gsu:GSU2016 sensory box/GGDEF family protein; diguanylate cyclase/phosphodiesterase 4947985 4175903 Patl_4114 Pseudoalteromonas atlantica T6c diguanylate cyclase/phosphodiesterase YP_663667.1 4945940 R 342610 CDS YP_663668.1 109900413 4175904 4948630..4950048 1 NC_008228.1 KEGG: sru:SRU_1464 hypothetical protein; hypothetical protein 4950048 4175904 Patl_4115 Pseudoalteromonas atlantica T6c hypothetical protein YP_663668.1 4948630 D 342610 CDS YP_663669.1 109900414 4175905 4950158..4951501 1 NC_008228.1 PFAM: extracellular solute-binding protein, family 1; KEGG: sme:SMc01496 probable sorbitol-binding periplasmic protein; extracellular solute-binding protein 4951501 4175905 Patl_4116 Pseudoalteromonas atlantica T6c extracellular solute-binding protein YP_663669.1 4950158 D 342610 CDS YP_663670.1 109900415 4175906 4951570..4952442 1 NC_008228.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01497 probable sorbitol/mannitol transport inner membrane transmembrane protein; binding-protein-dependent transport system inner membrane protein 4952442 4175906 Patl_4117 Pseudoalteromonas atlantica T6c binding-protein-dependent transport system inner membrane protein YP_663670.1 4951570 D 342610 CDS YP_663671.1 109900416 4175907 4952445..4953275 1 NC_008228.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01498 probable sorbitol/mannitol transport inner membrane protein; binding-protein-dependent transport system inner membrane protein 4953275 4175907 Patl_4118 Pseudoalteromonas atlantica T6c binding-protein-dependent transport system inner membrane protein YP_663671.1 4952445 D 342610 CDS YP_663672.1 109900417 4175908 4953286..4954302 1 NC_008228.1 PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; KEGG: ret:RHE_CH03679 sorbitol/mannitol ABC transporter, ATP-binding protein; ABC transporter-like protein 4954302 4175908 Patl_4119 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_663672.1 4953286 D 342610 CDS YP_663673.1 109900418 4175909 4954583..4955296 1 NC_008228.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: pha:PSHAb0206 putative unknown enzyme; HAD family hydrolase 4955296 4175909 Patl_4120 Pseudoalteromonas atlantica T6c HAD family hydrolase YP_663673.1 4954583 D 342610 CDS YP_663674.1 109900419 4175910 4955299..4956258 1 NC_008228.1 PFAM: putative sugar-binding region; KEGG: pha:PSHAa1504 transcriptional regulator; DeoR family transcriptional regulator 4956258 4175910 Patl_4121 Pseudoalteromonas atlantica T6c DeoR family transcriptional regulator YP_663674.1 4955299 D 342610 CDS YP_663675.1 109900420 4175911 complement(4956359..4957321) 1 NC_008228.1 PFAM: PfkB; KEGG: bsu:BG12796 fructokinase; PfkB protein 4957321 4175911 Patl_4122 Pseudoalteromonas atlantica T6c PfkB protein YP_663675.1 4956359 R 342610 CDS YP_663676.1 109900421 4175912 complement(4957892..4958506) 1 NC_008228.1 PFAM: regulatory protein, TetR; KEGG: son:SO3494 transcriptional regulator, TetR family; TetR family transcriptional regulator 4958506 4175912 Patl_4123 Pseudoalteromonas atlantica T6c TetR family transcriptional regulator YP_663676.1 4957892 R 342610 CDS YP_663677.1 109900422 4175913 4958925..4960172 1 NC_008228.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: son:SO3493 RND multidrug efflux membrane fusion protein MexE; RND family efflux transporter MFP subunit 4960172 4175913 Patl_4124 Pseudoalteromonas atlantica T6c RND family efflux transporter MFP subunit YP_663677.1 4958925 D 342610 CDS YP_663678.1 109900423 4175914 4960184..4963360 1 NC_008228.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: son:SO3492 RND multidrug efflux transporter MexF; hydrophobe/amphiphile efflux-1 (HAE1) family protein 4963360 4175914 Patl_4125 Pseudoalteromonas atlantica T6c hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_663678.1 4960184 D 342610 CDS YP_663679.1 109900424 4175915 4963353..4964735 1 NC_008228.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: psp:PSPPH_2271 outer membrane efflux protein; RND efflux system outer membrane lipoprotein 4964735 4175915 Patl_4126 Pseudoalteromonas atlantica T6c RND efflux system outer membrane lipoprotein YP_663679.1 4963353 D 342610 CDS YP_663680.1 109900425 4175916 complement(4964994..4965539) 1 NC_008228.1 PFAM: regulatory protein, TetR; KEGG: bja:blr7984 transcriptional regulatory protein; TetR family transcriptional regulator 4965539 4175916 Patl_4127 Pseudoalteromonas atlantica T6c TetR family transcriptional regulator YP_663680.1 4964994 R 342610 CDS YP_663681.1 109900426 4175917 4965941..4966561 1 NC_008228.1 PFAM: glutathione S-transferase-like; KEGG: sce:YLL060C Glutathione S-transferase capable of homodimerization; functional overlap with Gtt2p, Grx1p, and Grx2p; glutathione S-transferase-like protein 4966561 4175917 Patl_4128 Pseudoalteromonas atlantica T6c glutathione S-transferase-like protein YP_663681.1 4965941 D 342610 CDS YP_663682.1 109900427 4175918 4966606..4967313 1 NC_008228.1 KEGG: pha:PSHAb0211 hypothetical protein; anti-ECF sigma factor ChrR 4967313 4175918 Patl_4129 Pseudoalteromonas atlantica T6c anti-ECF sigma factor ChrR YP_663682.1 4966606 D 342610 CDS YP_663683.1 109900428 4175919 complement(4967479..4967781) 1 NC_008228.1 hypothetical protein 4967781 4175919 Patl_4130 Pseudoalteromonas atlantica T6c hypothetical protein YP_663683.1 4967479 R 342610 CDS YP_663684.1 109900429 4175920 complement(4968186..4968698) 1 NC_008228.1 hypothetical protein 4968698 4175920 Patl_4131 Pseudoalteromonas atlantica T6c hypothetical protein YP_663684.1 4968186 R 342610 CDS YP_663685.1 109900430 4175921 4968959..4969942 1 NC_008228.1 PFAM: protein of unknown function DUF1568; KEGG: pha:PSHAb0050 hypothetical protein; hypothetical protein 4969942 4175921 Patl_4132 Pseudoalteromonas atlantica T6c hypothetical protein YP_663685.1 4968959 D 342610 CDS YP_663686.1 109900431 4175922 complement(4970368..4970934) 1 NC_008228.1 PFAM: transport-associated; KEGG: pha:PSHAa0325 hypothetical protein; transport-associated protein 4970934 4175922 Patl_4133 Pseudoalteromonas atlantica T6c transport-associated protein YP_663686.1 4970368 R 342610 CDS YP_663687.1 109900432 4175923 complement(4971324..4972145) 1 NC_008228.1 PFAM: aldo/keto reductase; KEGG: rso:RSc1154 putative reductase oxidoreductase protein; aldo/keto reductase 4972145 4175923 Patl_4134 Pseudoalteromonas atlantica T6c aldo/keto reductase YP_663687.1 4971324 R 342610 CDS YP_663688.1 109900433 4175924 complement(4972388..4973743) 1 NC_008228.1 KEGG: ana:alr5319 hypothetical protein; hypothetical protein 4973743 4175924 Patl_4135 Pseudoalteromonas atlantica T6c hypothetical protein YP_663688.1 4972388 R 342610 CDS YP_663689.1 109900434 4175925 complement(4974206..4974400) 1 NC_008228.1 KEGG: pha:PSHAa0536 hypothetical protein; hypothetical protein 4974400 4175925 Patl_4136 Pseudoalteromonas atlantica T6c hypothetical protein YP_663689.1 4974206 R 342610 CDS YP_663690.1 109900435 4175926 complement(4974447..4974623) 1 NC_008228.1 PFAM: protein of unknown function DUF1328; KEGG: pha:PSHAa0537 hypothetical protein; hypothetical protein 4974623 4175926 Patl_4137 Pseudoalteromonas atlantica T6c hypothetical protein YP_663690.1 4974447 R 342610 CDS YP_663691.1 109900436 4175927 complement(4974841..4975818) 1 NC_008228.1 KEGG: ilo:IL1677 hypothetical protein; hypothetical protein 4975818 4175927 Patl_4138 Pseudoalteromonas atlantica T6c hypothetical protein YP_663691.1 4974841 R 342610 CDS YP_663692.1 109900437 4175928 complement(4975880..4977010) 1 NC_008228.1 KEGG: pae:PA2708 hypothetical protein; hypothetical protein 4977010 4175928 Patl_4139 Pseudoalteromonas atlantica T6c hypothetical protein YP_663692.1 4975880 R 342610 CDS YP_663693.1 109900438 4175929 complement(4977132..4977290) 1 NC_008228.1 PFAM: protein of unknown function UPF0057; KEGG: dde:Dde_1753 Pmp3 family protein; hypothetical protein 4977290 4175929 Patl_4140 Pseudoalteromonas atlantica T6c hypothetical protein YP_663693.1 4977132 R 342610 CDS YP_663694.1 109900439 4175930 complement(4977412..4978374) 1 NC_008228.1 TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: noc:Noc_1073 ribonuclease BN; putative ribonuclease BN 4978374 4175930 Patl_4141 Pseudoalteromonas atlantica T6c putative ribonuclease BN YP_663694.1 4977412 R 342610 CDS YP_663695.1 109900440 4175931 4978485..4979639 1 NC_008228.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pha:PSHAa2520 mechanosensitive channel protein; mechanosensitive ion channel protein MscS 4979639 4175931 Patl_4142 Pseudoalteromonas atlantica T6c mechanosensitive ion channel protein MscS YP_663695.1 4978485 D 342610 CDS YP_663696.1 109900441 4175932 complement(4979662..4980795) 1 NC_008228.1 KEGG: ilo:IL2354 permease of the major facilitator superfamily; major facilitator superfamily permease 4980795 4175932 Patl_4143 Pseudoalteromonas atlantica T6c major facilitator superfamily permease YP_663696.1 4979662 R 342610 CDS YP_663697.1 109900442 4175933 complement(4980914..4982332) 1 NC_008228.1 PFAM: Na+/H+ antiporter NhaA; KEGG: tdn:Tmden_1784 Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA 4982332 4175933 Patl_4144 Pseudoalteromonas atlantica T6c Na+/H+ antiporter NhaA YP_663697.1 4980914 R 342610 CDS YP_663698.1 109900443 4175934 complement(4982600..4983841) 1 NC_008228.1 TIGRFAM: gamma-glutamyl phosphate reductase; KEGG: pha:PSHAa0280 gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase 4983841 4175934 Patl_4145 Pseudoalteromonas atlantica T6c gamma-glutamyl phosphate reductase YP_663698.1 4982600 R 342610 CDS YP_663699.1 109900444 4175935 complement(4983844..4984950) 1 NC_008228.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 4984950 4175935 Patl_4146 Pseudoalteromonas atlantica T6c gamma-glutamyl kinase YP_663699.1 4983844 R 342610 CDS YP_663700.1 109900445 4175936 complement(4984962..4986455) 1 NC_008228.1 TIGRFAM: SSS sodium solute transporter superfamily sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: cps:CPS_3463 proline/sodium symporter; sodium/proline symporter 4986455 4175936 Patl_4147 Pseudoalteromonas atlantica T6c sodium/proline symporter YP_663700.1 4984962 R 342610 CDS YP_663701.1 109900446 4175937 4986926..4987471 1 NC_008228.1 PFAM: regulatory protein, MarR; KEGG: cps:CPS_1337 transcriptional regulator, MarR family; MarR family transcriptional regulator 4987471 4175937 Patl_4148 Pseudoalteromonas atlantica T6c MarR family transcriptional regulator YP_663701.1 4986926 D 342610 CDS YP_663702.1 109900447 4175938 complement(4987494..4988066) 1 NC_008228.1 KEGG: pha:PSHAb0553 putative lipoprotein; putative lipoprotein 4988066 4175938 Patl_4149 Pseudoalteromonas atlantica T6c putative lipoprotein YP_663702.1 4987494 R 342610 CDS YP_663703.1 109900448 4175939 4988453..4989343 1 NC_008228.1 PFAM: VacJ-like lipoprotein; KEGG: pca:Pcar_0450 surface lipoprotein-like; VacJ-like lipoprotein 4989343 4175939 Patl_4150 Pseudoalteromonas atlantica T6c VacJ-like lipoprotein YP_663703.1 4988453 D 342610 CDS YP_663704.1 109900449 4175940 4989351..4991774 1 NC_008228.1 KEGG: tdn:Tmden_1281 hypothetical protein; hypothetical protein 4991774 4175940 Patl_4151 Pseudoalteromonas atlantica T6c hypothetical protein YP_663704.1 4989351 D 342610 CDS YP_663705.1 109900450 4175941 complement(4992428..4994416) 1 NC_008228.1 PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: pha:PSHAa2394 two-component sensor histidine kinase and response regulator hybrid; histidine kinase 4994416 4175941 Patl_4152 Pseudoalteromonas atlantica T6c histidine kinase YP_663705.1 4992428 R 342610 CDS YP_663706.1 109900451 4175942 complement(4994432..4994890) 1 NC_008228.1 PFAM: response regulator receiver; KEGG: pha:PSHAa2395 two-component response regulator; response regulator receiver protein 4994890 4175942 Patl_4153 Pseudoalteromonas atlantica T6c response regulator receiver protein YP_663706.1 4994432 R 342610 CDS YP_663707.1 109900452 4175943 complement(4994892..4996373) 1 NC_008228.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like CHASE3; KEGG: pha:PSHAa2396 two-component sensor histidine kinase; multi-sensor signal transduction histidine kinase 4996373 4175943 Patl_4154 Pseudoalteromonas atlantica T6c multi-sensor signal transduction histidine kinase YP_663707.1 4994892 R 342610 CDS YP_663708.1 109900453 4175944 complement(4996426..4996659) 1 NC_008228.1 KEGG: pha:PSHAa2397 hypothetical protein; hypothetical protein 4996659 4175944 Patl_4155 Pseudoalteromonas atlantica T6c hypothetical protein YP_663708.1 4996426 R 342610 CDS YP_663709.1 109900454 4175945 complement(4996663..4997994) 1 NC_008228.1 PFAM: response regulator receiver sigma-54 factor, interaction region helix-turn-helix, Fis-type; SMART: ATPase; KEGG: pha:PSHAa2398 sigma-54 interacting response regulator protein; two component sigma-54 specific Fis family transcriptional regulator 4997994 4175945 Patl_4156 Pseudoalteromonas atlantica T6c two component sigma-54 specific Fis family transcriptional regulator YP_663709.1 4996663 R 342610 CDS YP_663710.1 109900455 4175946 complement(4998397..4999587) 1 NC_008228.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pha:PSHAa1378 hypothetical protein; N-acetyltransferase GCN5 4999587 4175946 Patl_4157 Pseudoalteromonas atlantica T6c N-acetyltransferase GCN5 YP_663710.1 4998397 R 342610 CDS YP_663711.1 109900456 4175947 complement(4999589..5001055) 1 NC_008228.1 PFAM: RimK-like ATP-grasp; KEGG: pha:PSHAa1377 hypothetical protein; RimK-like ATP-grasp 5001055 4175947 Patl_4158 Pseudoalteromonas atlantica T6c RimK-like ATP-grasp YP_663711.1 4999589 R 342610 CDS YP_663712.1 109900457 4175948 complement(5001319..5002953) 1 NC_008228.1 PFAM: beta-lactamase; KEGG: xcv:XCV2967 beta-lactamase precursor; beta-lactamase 5002953 4175948 Patl_4159 Pseudoalteromonas atlantica T6c beta-lactamase YP_663712.1 5001319 R 342610 CDS YP_663713.1 109900458 4175949 complement(5003054..5005510) 1 NC_008228.1 PFAM: beta-lactamase Peptidoglycan-binding domain 1 N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: pha:PSHAa0522 hypothetical protein; hypothetical protein 5005510 4175949 Patl_4160 Pseudoalteromonas atlantica T6c hypothetical protein YP_663713.1 5003054 R 342610 CDS YP_663714.1 109900459 4175950 5006000..5009026 1 NC_008228.1 KEGG: ilo:IL2339 outer membrane protein; hypothetical protein 5009026 4175950 Patl_4161 Pseudoalteromonas atlantica T6c hypothetical protein YP_663714.1 5006000 D 342610 CDS YP_663715.1 109900460 4175951 5009172..5011073 1 NC_008228.1 PFAM: glycoside hydrolase, family 3-like; KEGG: pha:PSHAb0065 beta-hexosaminidase A precursor (N-acetyl-beta-glucosaminidase) (beta-N-acetylhexosaminidase) (Chitobiase); glycoside hydrolase 5011073 4175951 Patl_4162 Pseudoalteromonas atlantica T6c glycoside hydrolase YP_663715.1 5009172 D 342610 CDS YP_663716.1 109900461 4175952 5011197..5011598 1 NC_008228.1 PFAM: NUDIX hydrolase; KEGG: son:SO0464 MutT/nudix family protein; NUDIX hydrolase 5011598 4175952 Patl_4163 Pseudoalteromonas atlantica T6c NUDIX hydrolase YP_663716.1 5011197 D 342610 CDS YP_663717.1 109900462 4175953 5011843..5012691 1 NC_008228.1 PFAM: helix-turn-helix protein RpiR sugar isomerase (SIS); KEGG: yps:YPTB2884 putative RpiR-family transcriptional regulatory protein; RpiR family transcriptional regulator 5012691 4175953 Patl_4164 Pseudoalteromonas atlantica T6c RpiR family transcriptional regulator YP_663717.1 5011843 D 342610 CDS YP_663718.1 109900463 4175954 5013050..5015893 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: xcv:XCV2894 TonB-dependent outer membrane receptor; TonB-dependent receptor 5015893 4175954 Patl_4165 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_663718.1 5013050 D 342610 CDS YP_663719.1 109900464 4175955 complement(5016066..5016584) 1 NC_008228.1 hypothetical protein 5016584 4175955 Patl_4166 Pseudoalteromonas atlantica T6c hypothetical protein YP_663719.1 5016066 R 342610 CDS YP_663720.1 109900465 4175956 complement(5016747..5017922) 1 NC_008228.1 PFAM: Uncharacterised conserved protein UCP016719; KEGG: pha:PSHAa0521 hypothetical protein; hypothetical protein 5017922 4175956 Patl_4167 Pseudoalteromonas atlantica T6c hypothetical protein YP_663720.1 5016747 R 342610 CDS YP_663721.1 109900466 4175957 complement(5017919..5018842) 1 NC_008228.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase 5018842 murQ 4175957 murQ Pseudoalteromonas atlantica T6c N-acetylmuramic acid 6-phosphate etherase YP_663721.1 5017919 R 342610 CDS YP_663722.1 109900467 4175958 complement(5018860..5019747) 1 NC_008228.1 PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: cvi:CV2896 probable N-acetylglucosamine kinase; BadF/BadG/BcrA/BcrD type ATPase 5019747 4175958 Patl_4169 Pseudoalteromonas atlantica T6c BadF/BadG/BcrA/BcrD type ATPase YP_663722.1 5018860 R 342610 CDS YP_663723.1 109900468 4175959 complement(5019744..5021324) 1 NC_008228.1 PFAM: Na+/solute symporter; KEGG: tdn:Tmden_2070 Na+/solute symporter; Na+/solute symporter 5021324 4175959 Patl_4170 Pseudoalteromonas atlantica T6c Na+/solute symporter YP_663723.1 5019744 R 342610 CDS YP_663724.1 109900469 4175960 complement(5021331..5022743) 1 NC_008228.1 PFAM: NLP/P60; KEGG: xcb:XC_3878 hypothetical protein; NLP/P60 5022743 4175960 Patl_4171 Pseudoalteromonas atlantica T6c NLP/P60 YP_663724.1 5021331 R 342610 CDS YP_663725.1 109900470 4175961 complement(5022756..5023922) 1 NC_008228.1 PFAM: protein of unknown function DUF819; KEGG: bha:BH3005 hypothetical protein; hypothetical protein 5023922 4175961 Patl_4172 Pseudoalteromonas atlantica T6c hypothetical protein YP_663725.1 5022756 R 342610 CDS YP_663726.1 109900471 4175962 5024078..5025061 1 NC_008228.1 PFAM: sugar isomerase (SIS); KEGG: son:SO3506 glucosamine-6-phosphate isomerase; glutamine-fructose-6-phosphate transaminase 5025061 4175962 Patl_4173 Pseudoalteromonas atlantica T6c glutamine-fructose-6-phosphate transaminase YP_663726.1 5024078 D 342610 CDS YP_663727.1 109900472 4175963 5025063..5026193 1 NC_008228.1 KEGG: son:SO3505 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase 5026193 4175963 Patl_4174 Pseudoalteromonas atlantica T6c N-acetylglucosamine-6-phosphate deacetylase YP_663727.1 5025063 D 342610 CDS YP_663728.1 109900473 4175964 5026210..5027550 1 NC_008228.1 TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: tdn:Tmden_2077 glucose/galactose transporter; glucose/galactose transporter 5027550 4175964 Patl_4175 Pseudoalteromonas atlantica T6c glucose/galactose transporter YP_663728.1 5026210 D 342610 CDS YP_663729.1 109900474 4175965 complement(5027603..5028676) 1 NC_008228.1 PFAM: peptidase U61, LD-carboxypeptidase A; KEGG: ava:Ava_4926 twin-arginine translocation pathway signal; peptidase U61, LD-carboxypeptidase A 5028676 4175965 Patl_4176 Pseudoalteromonas atlantica T6c peptidase U61, LD-carboxypeptidase A YP_663729.1 5027603 R 342610 CDS YP_663730.1 109900475 4175966 5028969..5030012 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein response regulator receiver; KEGG: tdn:Tmden_0218 diguanylate cyclase (GGDEF domain); diguanylate cyclase 5030012 4175966 Patl_4177 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_663730.1 5028969 D 342610 CDS YP_663731.1 109900476 4175967 complement(5030240..5031346) 1 NC_008228.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: fra:Francci3_0673 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 5031346 4175967 Patl_4178 Pseudoalteromonas atlantica T6c filamentation induced by cAMP protein fic YP_663731.1 5030240 R 342610 CDS YP_663732.1 109900477 4175968 complement(5031398..5033572) 1 NC_008228.1 hypothetical protein 5033572 4175968 Patl_4179 Pseudoalteromonas atlantica T6c hypothetical protein YP_663732.1 5031398 R 342610 CDS YP_663733.1 109900478 4175969 complement(5033969..5035573) 1 NC_008228.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: son:SO2525 ABC transporter, ATP-binding protein; ABC transporter-like protein 5035573 4175969 Patl_4180 Pseudoalteromonas atlantica T6c ABC transporter-like protein YP_663733.1 5033969 R 342610 CDS YP_663734.1 109900479 4175970 complement(5035787..5037283) 1 NC_008228.1 PFAM: chemotaxis sensory transducer; KEGG: pha:PSHAb0277 putative methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 5037283 4175970 Patl_4181 Pseudoalteromonas atlantica T6c methyl-accepting chemotaxis sensory transducer YP_663734.1 5035787 R 342610 CDS YP_663735.1 109900480 4175971 complement(5037510..5038070) 1 NC_008228.1 KEGG: ilo:IL1545 secreted protein, containing thioredoxin-like domain; hypothetical protein 5038070 4175971 Patl_4182 Pseudoalteromonas atlantica T6c hypothetical protein YP_663735.1 5037510 R 342610 CDS YP_663736.1 109900481 4175972 complement(5038143..5039588) 1 NC_008228.1 PFAM: chemotaxis sensory transducer; KEGG: pha:PSHAb0277 putative methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 5039588 4175972 Patl_4183 Pseudoalteromonas atlantica T6c methyl-accepting chemotaxis sensory transducer YP_663736.1 5038143 R 342610 CDS YP_663737.1 109900482 4175973 complement(5039777..5040862) 1 NC_008228.1 KEGG: bja:bll1370 hypothetical protein; hypothetical protein 5040862 4175973 Patl_4184 Pseudoalteromonas atlantica T6c hypothetical protein YP_663737.1 5039777 R 342610 CDS YP_663738.1 109900483 4175974 complement(5040864..5042282) 1 NC_008228.1 KEGG: mbo:Mb2023 hypothetical protein; hypothetical protein 5042282 4175974 Patl_4185 Pseudoalteromonas atlantica T6c hypothetical protein YP_663738.1 5040864 R 342610 CDS YP_663739.1 109900484 4175975 5042438..5043025 1 NC_008228.1 PFAM: regulatory protein, TetR; KEGG: pfl:PFL_2966 transcriptional regulator, TetR family; TetR family transcriptional regulator 5043025 4175975 Patl_4186 Pseudoalteromonas atlantica T6c TetR family transcriptional regulator YP_663739.1 5042438 D 342610 CDS YP_663740.1 109900485 4175976 complement(5043102..5044349) 1 NC_008228.1 PFAM: malic enzyme-like malic enzyme, NAD-binding; KEGG: ilo:IL2463 NADP-dependent malic enzyme; malate dehydrogenase 5044349 4175976 Patl_4187 Pseudoalteromonas atlantica T6c malate dehydrogenase YP_663740.1 5043102 R 342610 CDS YP_663741.1 109900486 4175977 complement(5044957..5045172) 1 NC_008228.1 PFAM: ribosomal protein L31; KEGG: pmu:PM1142 50S ribosomal protein L31; 50S ribosomal protein L31 5045172 4175977 Patl_4188 Pseudoalteromonas atlantica T6c 50S ribosomal protein L31 YP_663741.1 5044957 R 342610 CDS YP_663742.1 109900487 4175978 5045398..5047575 1 NC_008228.1 TIGRFAM: primosomal protein N'; PFAM: helicase-like type III restriction enzyme, res subunit DEAD/DEAH box helicase-like; KEGG: ppr:PBPRA0257 primosomal protein N'; primosomal protein N' 5047575 4175978 Patl_4189 Pseudoalteromonas atlantica T6c primosomal protein N' YP_663742.1 5045398 D 342610 CDS YP_663743.1 109900488 4175979 5047707..5048237 1 NC_008228.1 PFAM: Sporulation related; KEGG: vfi:VF2276 cell division protein FtsN; sporulation-like protein 5048237 4175979 Patl_4190 Pseudoalteromonas atlantica T6c sporulation-like protein YP_663743.1 5047707 D 342610 CDS YP_663744.1 109900489 4175980 5048444..5048968 1 NC_008228.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 5048968 4175980 Patl_4191 Pseudoalteromonas atlantica T6c ATP-dependent protease peptidase subunit YP_663744.1 5048444 D 342610 CDS YP_663745.1 109900490 4175981 5049047..5050378 1 NC_008228.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 5050378 hslU 4175981 hslU Pseudoalteromonas atlantica T6c ATP-dependent protease ATP-binding subunit HslU YP_663745.1 5049047 D 342610 CDS YP_663746.1 109900491 4175982 complement(5050495..5051628) 1 NC_008228.1 PFAM: beta-lactamase; KEGG: sma:SAV1304 putative esterase; beta-lactamase 5051628 4175982 Patl_4193 Pseudoalteromonas atlantica T6c beta-lactamase YP_663746.1 5050495 R 342610 CDS YP_663747.1 109900492 4175983 complement(5052256..5053299) 1 NC_008228.1 KEGG: tcx:Tcr_0271 hypothetical protein; hypothetical protein 5053299 4175983 Patl_4194 Pseudoalteromonas atlantica T6c hypothetical protein YP_663747.1 5052256 R 342610 CDS YP_663748.1 109900493 4175984 complement(5053327..5053779) 1 NC_008228.1 KEGG: pae:PA2779 hypothetical protein; hypothetical protein 5053779 4175984 Patl_4195 Pseudoalteromonas atlantica T6c hypothetical protein YP_663748.1 5053327 R 342610 CDS YP_663749.1 109900494 4175985 complement(5053989..5054498) 1 NC_008228.1 hypothetical protein 5054498 4175985 Patl_4196 Pseudoalteromonas atlantica T6c hypothetical protein YP_663749.1 5053989 R 342610 CDS YP_663750.1 109900495 4175986 complement(5054612..5055817) 1 NC_008228.1 PFAM: Na+/H+ antiporter NhaA; KEGG: pfo:Pfl_1234 Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA 5055817 4175986 Patl_4197 Pseudoalteromonas atlantica T6c Na+/H+ antiporter NhaA YP_663750.1 5054612 R 342610 CDS YP_663751.1 109900496 4175987 5055940..5056827 1 NC_008228.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: psb:Psyr_2422 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 5056827 4175987 Patl_4198 Pseudoalteromonas atlantica T6c LysR family transcriptional regulator YP_663751.1 5055940 D 342610 CDS YP_663752.1 109900497 4175988 5057098..5058477 1 NC_008228.1 PFAM: SH3, type 3; SMART: SH3-like region; KEGG: btk:BT9727_1787 NLP/P60 family protein; hypothetical protein 5058477 4175988 Patl_4199 Pseudoalteromonas atlantica T6c hypothetical protein YP_663752.1 5057098 D 342610 CDS YP_663753.1 109900498 4175989 5058525..5058956 1 NC_008228.1 KEGG: hch:HCH_04563 hypothetical protein; hypothetical protein 5058956 4175989 Patl_4200 Pseudoalteromonas atlantica T6c hypothetical protein YP_663753.1 5058525 D 342610 CDS YP_663754.1 109900499 4175990 5059420..5061594 1 NC_008228.1 PFAM: glutamine synthetase, catalytic region; KEGG: syn:slr0288 glutamate-ammonia ligase, glutamine synthetase type III; glutamine synthetase 5061594 4175990 Patl_4201 Pseudoalteromonas atlantica T6c glutamine synthetase YP_663754.1 5059420 D 342610 CDS YP_663755.1 109900500 4175991 5061692..5062375 1 NC_008228.1 KEGG: pha:PSHAa1373 hypothetical protein; hypothetical protein 5062375 4175991 Patl_4202 Pseudoalteromonas atlantica T6c hypothetical protein YP_663755.1 5061692 D 342610 CDS YP_663756.1 109900501 4175992 5062544..5064370 1 NC_008228.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 5064370 secD 4175992 secD Pseudoalteromonas atlantica T6c preprotein translocase subunit SecD YP_663756.1 5062544 D 342610 CDS YP_663757.1 109900502 4175993 5064367..5065353 1 NC_008228.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 5065353 secF 4175993 secF Pseudoalteromonas atlantica T6c preprotein translocase subunit SecF YP_663757.1 5064367 D 342610 CDS YP_663758.1 109900503 4175994 complement(5065467..5066267) 1 NC_008228.1 PFAM: protein of unknown function DUF155; KEGG: wsu:WS1725 hypothetical protein; hypothetical protein 5066267 4175994 Patl_4205 Pseudoalteromonas atlantica T6c hypothetical protein YP_663758.1 5065467 R 342610 CDS YP_663759.1 109900504 4175995 complement(5066595..5067944) 1 NC_008228.1 TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: vfi:VF2489 glutathione reductase; glutathione-disulfide reductase 5067944 4175995 Patl_4206 Pseudoalteromonas atlantica T6c glutathione-disulfide reductase YP_663759.1 5066595 R 342610 CDS YP_663760.1 109900505 4175996 5068212..5070254 1 NC_008228.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: vpa:VP0070 oligopeptidase A; oligopeptidase A 5070254 4175996 Patl_4207 Pseudoalteromonas atlantica T6c oligopeptidase A YP_663760.1 5068212 D 342610 CDS YP_663761.1 109900506 4175997 5070285..5070992 1 NC_008228.1 KEGG: pha:PSHAa0181 hypothetical protein; hypothetical protein 5070992 4175997 Patl_4208 Pseudoalteromonas atlantica T6c hypothetical protein YP_663761.1 5070285 D 342610 CDS YP_663762.1 109900507 4175998 5071138..5071938 1 NC_008228.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: yps:YPTB0255 ubiquinone/menaquinone biosynthesis methyltransferase; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase LpxD 5071938 4175998 Patl_4209 Pseudoalteromonas atlantica T6c UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase LpxD YP_663762.1 5071138 D 342610 CDS YP_663763.1 109900508 4175999 5071939..5072580 1 NC_008228.1 PFAM: protein of unknown function DUF1243; KEGG: ppr:PBPRA0117 conserved hypothetical protein; hypothetical protein 5072580 4175999 Patl_4210 Pseudoalteromonas atlantica T6c hypothetical protein YP_663763.1 5071939 D 342610 CDS YP_663764.1 109900509 4176000 5072584..5074218 1 NC_008228.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1; KEGG: pha:PSHAa2928 2-octaprenylphenol hydroxylase; ubiquinone biosynthesis; 2-polyprenylphenol 6-hydroxylase 5074218 4176000 Patl_4211 Pseudoalteromonas atlantica T6c 2-polyprenylphenol 6-hydroxylase YP_663764.1 5072584 D 342610 CDS YP_663765.1 109900510 4176001 complement(5074281..5075201) 1 NC_008228.1 KEGG: cps:CPS_1665 hypothetical protein; hypothetical protein 5075201 4176001 Patl_4212 Pseudoalteromonas atlantica T6c hypothetical protein YP_663765.1 5074281 R 342610 CDS YP_663766.1 109900511 4176002 5075347..5075601 1 NC_008228.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: hit:NTHI0279 sec-independent protein translocase protein TatA/E; twin arginine-targeting protein translocase 5075601 4176002 Patl_4213 Pseudoalteromonas atlantica T6c twin arginine-targeting protein translocase YP_663766.1 5075347 D 342610 CDS YP_663767.1 109900512 4176003 5075616..5075915 1 NC_008228.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: ppr:PBPRA0120 sec-independent protein translocase protein TatB; twin-arginine translocation protein subunit TatB 5075915 4176003 Patl_4214 Pseudoalteromonas atlantica T6c twin-arginine translocation protein subunit TatB YP_663767.1 5075616 D 342610 CDS YP_663768.1 109900513 4176004 5075922..5076731 1 NC_008228.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: cps:CPS_0165 Sec-independent periplasmic protein translocation protein TatC; Sec-independent protein translocase subunit TatC 5076731 4176004 Patl_4215 Pseudoalteromonas atlantica T6c Sec-independent protein translocase subunit TatC YP_663768.1 5075922 D 342610 CDS YP_663769.1 109900514 4176005 5076728..5077312 1 NC_008228.1 KEGG: son:SO4205 hypothetical protein; hypothetical protein 5077312 4176005 Patl_4216 Pseudoalteromonas atlantica T6c hypothetical protein YP_663769.1 5076728 D 342610 CDS YP_663770.1 109900515 4176006 5077314..5078102 1 NC_008228.1 PFAM: TatD-related deoxyribonuclease; KEGG: ilo:IL2367 Mg-dependent DNase; TatD-related deoxyribonuclease 5078102 4176006 Patl_4217 Pseudoalteromonas atlantica T6c TatD-related deoxyribonuclease YP_663770.1 5077314 D 342610 CDS YP_663771.1 109900516 4176007 5078106..5080001 1 NC_008228.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein Diverse 7TM receptor, transmembrane region; KEGG: son:SO4207 GGDEF domain protein; diguanylate cyclase 5080001 4176007 Patl_4218 Pseudoalteromonas atlantica T6c diguanylate cyclase YP_663771.1 5078106 D 342610 CDS YP_663772.1 109900517 4176008 5080051..5081052 1 NC_008228.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 5081052 4176008 Patl_4219 Pseudoalteromonas atlantica T6c delta-aminolevulinic acid dehydratase YP_663772.1 5080051 D 342610 CDS YP_663773.1 109900518 4176009 complement(5081249..5082760) 1 NC_008228.1 PFAM: Ppx/GppA phosphatase; KEGG: pha:PSHAa0115 guanosine pentaphosphate phosphohydrolase; Ppx/GppA phosphatase 5082760 4176009 Patl_4220 Pseudoalteromonas atlantica T6c Ppx/GppA phosphatase YP_663773.1 5081249 R 342610 CDS YP_663774.1 109900519 4176010 complement(5082757..5084022) 1 NC_008228.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 5084022 4176010 Patl_4221 Pseudoalteromonas atlantica T6c ATP-dependent RNA helicase RhlB YP_663774.1 5082757 R 342610 CDS YP_663775.1 109900520 4176011 5084124..5084450 1 NC_008228.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: vpa:VP3001 thioredoxin; thioredoxin 5084450 4176011 Patl_4222 Pseudoalteromonas atlantica T6c thioredoxin YP_663775.1 5084124 D 342610 CDS YP_663776.1 109900521 4176012 5084682..5085983 1 NC_008228.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 5085983 rho 4176012 rho Pseudoalteromonas atlantica T6c transcription termination factor Rho YP_663776.1 5084682 D 342610 CDS YP_663777.1 109900522 4176013 5086259..5086750 1 NC_008228.1 KEGG: vvy:VV3218 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 5086750 4176013 Patl_4224 Pseudoalteromonas atlantica T6c phosphoribosylaminoimidazole carboxylase catalytic subunit YP_663777.1 5086259 D 342610 CDS YP_663778.1 109900523 4176014 5086747..5087889 1 NC_008228.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 5087889 4176014 Patl_4225 Pseudoalteromonas atlantica T6c phosphoribosylaminoimidazole carboxylase ATPase subunit YP_663778.1 5086747 D 342610 CDS YP_663779.1 109900524 4176016 5088632..5090959 1 NC_008228.1 PFAM: RNA binding S1; SMART: Resolvase, RNase H-like fold; KEGG: pha:PSHAa2854 conserved protein with nucleic acid-binding protein-like domain (transcriptional accessory protein); RNA binding S1 5090959 4176016 Patl_4226 Pseudoalteromonas atlantica T6c RNA binding S1 YP_663779.1 5088632 D 342610 CDS YP_663780.1 109900525 4176017 5091166..5091606 1 NC_008228.1 KEGG: son:SO2799 lipoprotein, putative; putative lipoprotein 5091606 4176017 Patl_4227 Pseudoalteromonas atlantica T6c putative lipoprotein YP_663780.1 5091166 D 342610 CDS YP_663781.1 109900526 4176018 complement(5091678..5092679) 1 NC_008228.1 KEGG: pha:PSHAa2855 hypothetical protein; hypothetical protein 5092679 4176018 Patl_4228 Pseudoalteromonas atlantica T6c hypothetical protein YP_663781.1 5091678 R 342610 CDS YP_663782.1 109900527 4176019 complement(5092714..5092977) 1 NC_008228.1 KEGG: ilo:IL0279 hypothetical protein; hypothetical protein 5092977 4176019 Patl_4229 Pseudoalteromonas atlantica T6c hypothetical protein YP_663782.1 5092714 R 342610 CDS YP_663783.1 109900528 4176020 complement(5093046..5093822) 1 NC_008228.1 TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; KEGG: vpa:VP0148 BioH protein; bioH protein 5093822 4176020 Patl_4230 Pseudoalteromonas atlantica T6c bioH protein YP_663783.1 5093046 R 342610 CDS YP_663784.1 109900529 4176021 5093883..5094605 1 NC_008228.1 KEGG: ssn:SSO_3544 hypothetical protein; amidophosphoribosyltransferases-like protein 5094605 4176021 Patl_4231 Pseudoalteromonas atlantica T6c amidophosphoribosyltransferases-like protein YP_663784.1 5093883 D 342610 CDS YP_663785.1 109900530 4176022 complement(5094589..5097147) 1 NC_008228.1 SMART: Peptidase M14, carboxypeptidase A; KEGG: pha:PSHAa2859 hypothetical protein; peptidase M14, carboxypeptidase A 5097147 4176022 Patl_4232 Pseudoalteromonas atlantica T6c peptidase M14, carboxypeptidase A YP_663785.1 5094589 R 342610 CDS YP_663786.1 109900531 4176023 5097307..5097885 1 NC_008228.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein 5097885 4176023 Patl_4233 Pseudoalteromonas atlantica T6c putative DNA uptake protein YP_663786.1 5097307 D 342610 CDS YP_663787.1 109900532 4176024 complement(5098121..5099464) 1 NC_008228.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: ppr:PBPRA0175 putative DNA-damage-inducible protein F; MATE efflux family protein 5099464 4176024 Patl_4234 Pseudoalteromonas atlantica T6c MATE efflux family protein YP_663787.1 5098121 R 342610 CDS YP_663788.1 109900533 4176025 5099579..5100628 1 NC_008228.1 PFAM: polysaccharide deacetylase; KEGG: ilo:IL0251 polysaccharide deacetylase family protein; polysaccharide deacetylase 5100628 4176025 Patl_4235 Pseudoalteromonas atlantica T6c polysaccharide deacetylase YP_663788.1 5099579 D 342610 CDS YP_663789.1 109900534 4176026 complement(5100625..5101242) 1 NC_008228.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tte:TTE0581 acetyltransferase; N-acetyltransferase GCN5 5101242 4176026 Patl_4236 Pseudoalteromonas atlantica T6c N-acetyltransferase GCN5 YP_663789.1 5100625 R 342610 CDS YP_663790.1 109900535 4176027 complement(5101245..5101883) 1 NC_008228.1 PFAM: electron transport protein SCO1/SenC; KEGG: pha:PSHAa2864 SCO1/SenC protein (copper-binding protein); electron transport protein SCO1/SenC 5101883 4176027 Patl_4237 Pseudoalteromonas atlantica T6c electron transport protein SCO1/SenC YP_663790.1 5101245 R 342610 CDS YP_663791.1 109900536 4176028 complement(5101880..5102797) 1 NC_008228.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 5102797 4176028 Patl_4238 Pseudoalteromonas atlantica T6c protoheme IX farnesyltransferase YP_663791.1 5101880 R 342610 CDS YP_663792.1 109900537 4176029 complement(5102807..5103784) 1 NC_008228.1 PFAM: cytochrome oxidase assembly; KEGG: ilo:IL0254 uncharacterized protein required for cytochrome oxidase assembly; cytochrome oxidase assembly 5103784 4176029 Patl_4239 Pseudoalteromonas atlantica T6c cytochrome oxidase assembly YP_663792.1 5102807 R 342610 CDS YP_663793.1 109900538 4176030 complement(5103795..5104355) 1 NC_008228.1 KEGG: ppr:PBPRA0172 conserved hypothetical protein; hypothetical protein 5104355 4176030 Patl_4240 Pseudoalteromonas atlantica T6c hypothetical protein YP_663793.1 5103795 R 342610 CDS YP_663794.1 109900539 4176031 complement(5104339..5105079) 1 NC_008228.1 KEGG: cps:CPS_0232 hypothetical protein; hypothetical protein 5105079 4176031 Patl_4241 Pseudoalteromonas atlantica T6c hypothetical protein YP_663794.1 5104339 R 342610 CDS YP_663795.1 109900540 4176032 5105122..5105331 1 NC_008228.1 KEGG: vpa:VPA0541 hypothetical protein; hypothetical protein 5105331 4176032 Patl_4242 Pseudoalteromonas atlantica T6c hypothetical protein YP_663795.1 5105122 D 342610 CDS YP_663796.1 109900541 4176033 complement(5105393..5106274) 1 NC_008228.1 PFAM: cytochrome c oxidase, subunit III; KEGG: ilo:IL0257 cytochrome c oxidase subunit III; cytochrome c oxidase subunit III 5106274 4176033 Patl_4243 Pseudoalteromonas atlantica T6c cytochrome c oxidase subunit III YP_663796.1 5105393 R 342610 CDS YP_663797.1 109900542 4176034 complement(5106286..5106888) 1 NC_008228.1 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 5106888 4176034 Patl_4244 Pseudoalteromonas atlantica T6c cytochrome C oxidase assembly protein YP_663797.1 5106286 R 342610 CDS YP_663798.1 109900543 4176035 complement(5107131..5108729) 1 NC_008228.1 PFAM: cytochrome c oxidase, subunit I; KEGG: son:SO4607 cytochrome c oxidase, subunit I; cytochrome-c oxidase 5108729 4176035 Patl_4245 Pseudoalteromonas atlantica T6c cytochrome-c oxidase YP_663798.1 5107131 R 342610 CDS YP_663799.1 109900544 4176036 complement(5108740..5109894) 1 NC_008228.1 PFAM: cytochrome c oxidase, subunit II cytochrome c, class I cytochrome C oxidase subunit II, transmembrane region; KEGG: ilo:IL0260 cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II 5109894 4176036 Patl_4246 Pseudoalteromonas atlantica T6c cytochrome c oxidase subunit II YP_663799.1 5108740 R 342610 CDS YP_663800.1 109900545 4176037 complement(5110273..5110896) 1 NC_008228.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 5110896 4176037 Patl_4247 Pseudoalteromonas atlantica T6c LexA repressor YP_663800.1 5110273 R 342610 CDS YP_663801.1 109900546 4176038 5111090..5113525 1 NC_008228.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO4602 glycerol-3-phosphate acyltransferase; glycerol-3-phosphate O-acyltransferase 5113525 4176038 Patl_4248 Pseudoalteromonas atlantica T6c glycerol-3-phosphate O-acyltransferase YP_663801.1 5111090 D 342610 CDS YP_663802.1 109900547 4176039 complement(5113618..5115168) 1 NC_008228.1 TIGRFAM: threonine dehydratase, biosynthetic; PFAM: Threonine dehydratase-like Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: vfi:VF2560 threonine dehydratase; threonine dehydratase, biosynthetic 5115168 4176039 Patl_4249 Pseudoalteromonas atlantica T6c threonine dehydratase, biosynthetic YP_663802.1 5113618 R 342610 CDS YP_663803.1 109900548 4176040 complement(5115168..5117015) 1 NC_008228.1 KEGG: son:SO4345 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxy-acid dehydratase 5117015 4176040 Patl_4250 Pseudoalteromonas atlantica T6c dihydroxy-acid dehydratase YP_663803.1 5115168 R 342610 CDS YP_663804.1 109900549 4176041 5117465..5118085 1 NC_008228.1 PFAM: protein of unknown function UPF0126; KEGG: ilo:IL2151 hypothetical protein; hypothetical protein 5118085 4176041 Patl_4251 Pseudoalteromonas atlantica T6c hypothetical protein YP_663804.1 5117465 D 342610 CDS YP_663805.1 109900550 4176042 5118147..5119697 1 NC_008228.1 KEGG: cps:CPS_4841 competence protein ComM; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit ATPase associated with various cellular activities, AAA_5; SMART: ATPase; Mg chelatase subunit ChlI 5119697 4176042 Patl_4252 Pseudoalteromonas atlantica T6c Mg chelatase subunit ChlI YP_663805.1 5118147 D 342610 CDS YP_663806.1 109900551 4176043 5119825..5121051 1 NC_008228.1 PFAM: PepSY-associated TM helix; KEGG: ccr:CC1782 hypothetical protein; PepSY-associated TM helix-containing protein 5121051 4176043 Patl_4253 Pseudoalteromonas atlantica T6c PepSY-associated TM helix-containing protein YP_663806.1 5119825 D 342610 CDS YP_663807.1 109900552 4176044 complement(5121048..5121902) 1 NC_008228.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 5121902 4176044 Patl_4254 Pseudoalteromonas atlantica T6c DNA-binding transcriptional regulator IlvY YP_663807.1 5121048 R 342610 CDS YP_663808.1 109900553 4176045 5122047..5123531 1 NC_008228.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 5123531 4176045 Patl_4255 Pseudoalteromonas atlantica T6c ketol-acid reductoisomerase YP_663808.1 5122047 D 342610 CDS YP_663809.1 109900554 4176046 5124087..5124419 1 NC_008228.1 KEGG: cps:CPS_1368 hypothetical protein; hypothetical protein 5124419 4176046 Patl_4256 Pseudoalteromonas atlantica T6c hypothetical protein YP_663809.1 5124087 D 342610 CDS YP_663810.1 109900555 4176047 complement(5124576..5125223) 1 NC_008228.1 PFAM: OmpA/MotB 17 kDa surface antigen; KEGG: ilo:IL1565 outer membrane protein and related peptidoglycan-associated (LipO)proteins; OmpA/MotB protein 5125223 4176047 Patl_4257 Pseudoalteromonas atlantica T6c OmpA/MotB protein YP_663810.1 5124576 R 342610 CDS YP_663811.1 109900556 4176048 complement(5125422..5126654) 1 NC_008228.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rba:RB11273 bicyclomycin resistance protein; Bcr/CflA subfamily drug resistance transporter 5126654 4176048 Patl_4258 Pseudoalteromonas atlantica T6c Bcr/CflA subfamily drug resistance transporter YP_663811.1 5125422 R 342610 CDS YP_663812.1 109900557 4176049 complement(5126826..5127365) 1 NC_008228.1 PFAM: Phosphoglycerate mutase; KEGG: ilo:IL1582 broad specificity phosphatase, PhoE-like; phosphoglycerate mutase 5127365 4176049 Patl_4259 Pseudoalteromonas atlantica T6c phosphoglycerate mutase YP_663812.1 5126826 R 342610 CDS YP_663813.1 109900558 4176050 complement(5127365..5127955) 1 NC_008228.1 PFAM: carbonic anhydrase; KEGG: son:SO2474 carbonic anhydrase family protein; carbonate dehydratase 5127955 4176050 Patl_4260 Pseudoalteromonas atlantica T6c carbonate dehydratase YP_663813.1 5127365 R 342610 CDS YP_663814.1 109900559 4176051 complement(5127952..5128848) 1 NC_008228.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: cps:CPS_4613 membrane protein; hypothetical protein 5128848 4176051 Patl_4261 Pseudoalteromonas atlantica T6c hypothetical protein YP_663814.1 5127952 R 342610 CDS YP_663815.1 109900560 4176052 5128922..5130385 1 NC_008228.1 PFAM: peptidase M20 peptidase dimerisation; KEGG: rpa:RPA0412 hypothetical protein; hypothetical protein 5130385 4176052 Patl_4262 Pseudoalteromonas atlantica T6c hypothetical protein YP_663815.1 5128922 D 342610 CDS YP_663816.1 109900561 4176053 complement(5130415..5132310) 1 NC_008228.1 KEGG: pha:PSHAa0702 hypothetical protein ; membrane protein; hypothetical protein 5132310 4176053 Patl_4263 Pseudoalteromonas atlantica T6c hypothetical protein YP_663816.1 5130415 R 342610 CDS YP_663817.1 109900562 4176054 complement(5132552..5133040) 1 NC_008228.1 PFAM: Invasion associated locus B; KEGG: bja:bll3901 hypothetical protein; invasion associated locus B 5133040 4176054 Patl_4264 Pseudoalteromonas atlantica T6c invasion associated locus B YP_663817.1 5132552 R 342610 CDS YP_663818.1 109900563 4176055 complement(5133104..5134528) 1 NC_008228.1 PFAM: Nidogen, extracellular region; KEGG: cch:Cag_1897 nidogen, extracellular region; Nidogen, extracellular region 5134528 4176055 Patl_4265 Pseudoalteromonas atlantica T6c Nidogen, extracellular region YP_663818.1 5133104 R 342610 CDS YP_663819.1 109900564 4176056 complement(5134771..5135976) 1 NC_008228.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pha:PSHAb0118 respiratory NADH dehydrogenase II; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 5135976 4176056 Patl_4266 Pseudoalteromonas atlantica T6c FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_663819.1 5134771 R 342610 CDS YP_663820.1 109900565 4176057 complement(5136020..5136478) 1 NC_008228.1 hypothetical protein 5136478 4176057 Patl_4267 Pseudoalteromonas atlantica T6c hypothetical protein YP_663820.1 5136020 R 342610 CDS YP_663821.1 109900566 4176058 complement(5136552..5137802) 1 NC_008228.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 5137802 proA 4176058 proA Pseudoalteromonas atlantica T6c gamma-glutamyl phosphate reductase YP_663821.1 5136552 R 342610 CDS YP_663822.1 109900567 4176059 complement(5137851..5138948) 1 NC_008228.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 5138948 4176059 Patl_4269 Pseudoalteromonas atlantica T6c gamma-glutamyl kinase YP_663822.1 5137851 R 342610 CDS YP_663823.1 109900568 4176060 5139250..5141700 1 NC_008228.1 KEGG: pha:PSHAb0057 putative Zn-dependent aminopeptidase; putative Zn-dependent aminopeptidase 5141700 4176060 Patl_4270 Pseudoalteromonas atlantica T6c putative Zn-dependent aminopeptidase YP_663823.1 5139250 D 342610 CDS YP_663824.1 109900569 4176061 5141703..5142209 1 NC_008228.1 KEGG: pha:PSHAb0058 putative orphan protein; hypothetical protein 5142209 4176061 Patl_4271 Pseudoalteromonas atlantica T6c hypothetical protein YP_663824.1 5141703 D 342610 CDS YP_663825.1 109900570 4176062 5142333..5143457 1 NC_008228.1 PFAM: protein of unknown function UPF0118; KEGG: vpa:VP0091 putative permease protein; hypothetical protein 5143457 4176062 Patl_4272 Pseudoalteromonas atlantica T6c hypothetical protein YP_663825.1 5142333 D 342610 CDS YP_663826.1 109900571 4176063 complement(5143672..5144010) 1 NC_008228.1 hypothetical protein 5144010 4176063 Patl_4273 Pseudoalteromonas atlantica T6c hypothetical protein YP_663826.1 5143672 R 342610 CDS YP_663827.1 109900572 4176064 complement(5144067..5145305) 1 NC_008228.1 KEGG: pfo:Pfl_5467 hypothetical protein; hypothetical protein 5145305 4176064 Patl_4274 Pseudoalteromonas atlantica T6c hypothetical protein YP_663827.1 5144067 R 342610 CDS YP_663828.1 109900573 4176065 5145666..5146505 1 NC_008228.1 KEGG: ilo:IL2145 hypothetical protein; hypothetical protein 5146505 4176065 Patl_4275 Pseudoalteromonas atlantica T6c hypothetical protein YP_663828.1 5145666 D 342610 CDS YP_663829.1 109900574 4176066 5146518..5147042 1 NC_008228.1 PFAM: protein of unknown function DUF1285; KEGG: pfl:PFL_1807 hypothetical protein; hypothetical protein 5147042 4176066 Patl_4276 Pseudoalteromonas atlantica T6c hypothetical protein YP_663829.1 5146518 D 342610 CDS YP_663830.1 109900575 4176067 5147213..5148508 1 NC_008228.1 PFAM: amidohydrolase Amidohydrolase 3; KEGG: ilo:IL2390 Xaa-Pro dipeptidase family enzyme; amidohydrolase 5148508 4176067 Patl_4277 Pseudoalteromonas atlantica T6c amidohydrolase YP_663830.1 5147213 D 342610 CDS YP_663831.1 109900576 4176068 5148626..5149390 1 NC_008228.1 KEGG: pha:PSHAa0344 hypothetical protein; hypothetical protein 5149390 4176068 Patl_4278 Pseudoalteromonas atlantica T6c hypothetical protein YP_663831.1 5148626 D 342610 CDS YP_663832.1 109900577 4176069 5149569..5150021 1 NC_008228.1 KEGG: hch:HCH_03971 hypothetical protein; hypothetical protein 5150021 4176069 Patl_4279 Pseudoalteromonas atlantica T6c hypothetical protein YP_663832.1 5149569 D 342610 CDS YP_663833.1 109900578 4176070 complement(5150279..5150530) 1 NC_008228.1 PFAM: SirA-like; KEGG: pha:PSHAa0009 small ubiquitous RNA-binding protein; hypothetical protein 5150530 4176070 Patl_4280 Pseudoalteromonas atlantica T6c hypothetical protein YP_663833.1 5150279 R 342610 CDS YP_663834.1 109900579 4176071 complement(5150532..5151185) 1 NC_008228.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 5151185 pyrE 4176071 pyrE Pseudoalteromonas atlantica T6c orotate phosphoribosyltransferase YP_663834.1 5150532 R 342610 CDS YP_663835.1 109900580 4176072 complement(5151224..5151937) 1 NC_008228.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 5151937 rph 4176072 rph Pseudoalteromonas atlantica T6c ribonuclease PH YP_663835.1 5151224 R 342610 CDS YP_663836.1 109900581 4176073 5152108..5152980 1 NC_008228.1 TIGRFAM: conserved hypothetical protein; PFAM: YicC-like-like Domain of unknown function DUF1732; KEGG: cps:CPS_0107 conserved hypothetical protein TIGR00255; hypothetical protein 5152980 4176073 Patl_4283 Pseudoalteromonas atlantica T6c hypothetical protein YP_663836.1 5152108 D 342610 CDS YP_663837.1 109900582 4176074 5153025..5153366 1 NC_008228.1 KEGG: rba:RB3703 probable transcriptional regulator; hypothetical protein 5153366 4176074 Patl_4284 Pseudoalteromonas atlantica T6c hypothetical protein YP_663837.1 5153025 D 342610 CDS YP_663838.1 109900583 4176075 complement(5154012..5155178) 1 NC_008228.1 KEGG: pha:PSHAa2265 metal-dependent phosphohydrolase domain; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 5155178 4176075 Patl_4285 Pseudoalteromonas atlantica T6c metal dependent phosphohydrolase YP_663838.1 5154012 R 342610 CDS YP_663839.1 109900584 4176076 5155545..5158586 1 NC_008228.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: cps:CPS_3737 TonB-dependent receptor; TonB-dependent receptor 5158586 4176076 Patl_4286 Pseudoalteromonas atlantica T6c TonB-dependent receptor YP_663839.1 5155545 D 342610 CDS YP_663840.1 109900585 4176077 5158750..5159484 1 NC_008228.1 PFAM: SapC; KEGG: cps:CPS_3736 hypothetical protein; protein SapC protein 5159484 4176077 Patl_4287 Pseudoalteromonas atlantica T6c protein SapC protein YP_663840.1 5158750 D 342610 CDS YP_663841.1 109900586 4176078 5159500..5160531 1 NC_008228.1 SMART: Transcription factor jumonji/aspartyl beta-hydroxylase; KEGG: xcb:XC_4055 Pass1-related protein; transcription factor jumonji/aspartyl beta-hydroxylase 5160531 4176078 Patl_4288 Pseudoalteromonas atlantica T6c transcription factor jumonji/aspartyl beta-hydroxylase YP_663841.1 5159500 D 342610 CDS YP_663842.1 109900587 4176079 5160559..5162037 1 NC_008228.1 PFAM: tryptophan halogenase; KEGG: cps:CPS_3734 putative tryptophan halogenase; tryptophan halogenase 5162037 4176079 Patl_4289 Pseudoalteromonas atlantica T6c tryptophan halogenase YP_663842.1 5160559 D 342610 CDS YP_663843.1 109900588 4176080 5162053..5162778 1 NC_008228.1 KEGG: cps:CPS_0241 hypothetical protein; hypothetical protein 5162778 4176080 Patl_4290 Pseudoalteromonas atlantica T6c hypothetical protein YP_663843.1 5162053 D 342610 CDS YP_663844.1 109900589 4176081 complement(5162805..5163149) 1 NC_008228.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: cps:CPS_3583 putative methylated-DNA binding protein; methylated-DNA--protein-cysteine methyltransferase 5163149 4176081 Patl_4291 Pseudoalteromonas atlantica T6c methylated-DNA--protein-cysteine methyltransferase YP_663844.1 5162805 R 342610 CDS YP_663845.1 109900590 4176082 5163529..5164119 1 NC_008228.1 PFAM: DTW domain containing protein; KEGG: son:SO4554 hypothetical protein; DTW domain-containing protein 5164119 4176082 Patl_4292 Pseudoalteromonas atlantica T6c DTW domain-containing protein YP_663845.1 5163529 D 342610 CDS YP_663846.1 109900591 4176083 5164343..5167378 1 NC_008228.1 PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt Diverse 7TM receptor, transmembrane region; KEGG: cps:CPS_4481 sensor histidine kinase/response regulator; multi-sensor hybrid histidine kinase 5167378 4176083 Patl_4293 Pseudoalteromonas atlantica T6c multi-sensor hybrid histidine kinase YP_663846.1 5164343 D 342610 CDS YP_663847.1 109900592 4176084 complement(5167459..5167872) 1 NC_008228.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 5167872 atpC 4176084 atpC Pseudoalteromonas atlantica T6c F0F1 ATP synthase subunit epsilon YP_663847.1 5167459 R 342610 CDS YP_663848.1 109900593 4176085 complement(5167916..5169301) 1 NC_008228.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 5169301 4176085 Patl_4295 Pseudoalteromonas atlantica T6c F0F1 ATP synthase subunit beta YP_663848.1 5167916 R 342610 CDS YP_663849.1 109900594 4176086 complement(5169333..5170193) 1 NC_008228.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 5170193 4176086 Patl_4296 Pseudoalteromonas atlantica T6c F0F1 ATP synthase subunit gamma YP_663849.1 5169333 R 342610 CDS YP_663850.1 109900595 4176087 complement(5170249..5171790) 1 NC_008228.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 5171790 4176087 Patl_4297 Pseudoalteromonas atlantica T6c F0F1 ATP synthase subunit alpha YP_663850.1 5170249 R 342610 CDS YP_663851.1 109900596 4176088 complement(5171804..5172337) 1 NC_008228.1 TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+-transporting two-sector ATPase, delta (OSCP) subunit; KEGG: son:SO4750 ATP synthase F1, delta subunit; ATP synthase F1 subunit delta 5172337 4176088 Patl_4298 Pseudoalteromonas atlantica T6c ATP synthase F1 subunit delta YP_663851.1 5171804 R 342610 CDS YP_663852.1 109900597 4176089 complement(5172352..5172822) 1 NC_008228.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 5172822 4176089 Patl_4299 Pseudoalteromonas atlantica T6c F0F1 ATP synthase subunit B YP_663852.1 5172352 R 342610 CDS YP_663853.1 109900598 4176090 complement(5172862..5173110) 1 NC_008228.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 5173110 4176090 Patl_4300 Pseudoalteromonas atlantica T6c F0F1 ATP synthase subunit C YP_663853.1 5172862 R 342610 CDS YP_663854.1 109900599 4176091 complement(5173164..5173976) 1 NC_008228.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 5173976 4176091 Patl_4301 Pseudoalteromonas atlantica T6c F0F1 ATP synthase subunit A YP_663854.1 5173164 R 342610 CDS YP_663855.1 109900600 4176092 complement(5174025..5174411) 1 NC_008228.1 PFAM: ATP synthase I chain; KEGG: vch:VC2771 ATP synthase protein I; ATP synthase I chain 5174411 4176092 Patl_4302 Pseudoalteromonas atlantica T6c ATP synthase I chain YP_663855.1 5174025 R 342610 CDS YP_663856.1 109900601 4176093 complement(5174513..5175385) 1 NC_008228.1 TIGRFAM: parB-like partition proteins; PFAM: ParB-like nuclease; KEGG: pha:PSHAa3016 partitioning protein B; parB-like partition proteins 5175385 4176093 Patl_4303 Pseudoalteromonas atlantica T6c parB-like partition proteins YP_663856.1 5174513 R 342610 CDS YP_663857.1 109900602 4176094 complement(5175419..5176255) 1 NC_008228.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO4756 ParA family protein; cobyrinic acid a,c-diamide synthase 5176255 4176094 Patl_4304 Pseudoalteromonas atlantica T6c cobyrinic acid a,c-diamide synthase YP_663857.1 5175419 R 342610 CDS YP_663858.1 109900603 4176095 complement(5176319..5176957) 1 NC_008228.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: ppr:PBPRA3614 putative glucose inhibited division protein B; methyltransferase GidB 5176957 4176095 Patl_4305 Pseudoalteromonas atlantica T6c methyltransferase GidB YP_663858.1 5176319 R 342610 CDS YP_663859.1 109900604 4176096 complement(5176957..5178858) 1 NC_008228.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 5178858 4176096 Patl_4306 Pseudoalteromonas atlantica T6c tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_663859.1 5176957 R 342610 CDS YP_663860.1 109900605 4176097 complement(5179915..5180730) 1 NC_008228.1 KEGG: ppu:PP1552 phage replication protein, putative; hypothetical protein 5180730 4176097 Patl_4307 Pseudoalteromonas atlantica T6c hypothetical protein YP_663860.1 5179915 R 342610 CDS YP_663861.1 109900606 4176098 complement(5180750..5181424) 1 NC_008228.1 hypothetical protein 5181424 4176098 Patl_4308 Pseudoalteromonas atlantica T6c hypothetical protein YP_663861.1 5180750 R 342610 CDS YP_663862.1 109900607 4176099 complement(5181428..5181865) 1 NC_008228.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: sdy:SDY_4006 initiation of chromosome replication; flavodoxin/nitric oxide synthase 5181865 4176099 Patl_4309 Pseudoalteromonas atlantica T6c flavodoxin/nitric oxide synthase YP_663862.1 5181428 R 342610 CDS YP_663863.1 109900608 4176100 complement(5182145..5183527) 1 NC_008228.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 5183527 trmE 4176100 trmE Pseudoalteromonas atlantica T6c tRNA modification GTPase TrmE YP_663863.1 5182145 R 342610 CDS YP_663864.1 109900609 4176101 complement(5183536..5184018) 1 NC_008228.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 5184018 4176101 Patl_4311 Pseudoalteromonas atlantica T6c putative nucleotide-binding protein YP_663864.1 5183536 R 342610 CDS YP_663865.1 109900610 4176102 complement(5184129..5185760) 1 NC_008228.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: pha:PSHAa3022 preprotein translocase ; inner membrane protein (IMP) integration factor; binds TM regions of nascent IMPs; required for sec-independent IMP integration; associated with the with SecYEG and SecDFyajC translocase; 60 kDa inner membrane insertion protein 5185760 4176102 Patl_4312 Pseudoalteromonas atlantica T6c 60 kDa inner membrane insertion protein YP_663865.1 5184129 R 342610 CDS YP_663866.1 109900611 4176103 complement(5185872..5186126) 1 NC_008228.1 PFAM: protein of unknown function DUF37; KEGG: bld:BLi03210 hypothetical protein; hypothetical protein 5186126 4176103 Patl_4313 Pseudoalteromonas atlantica T6c hypothetical protein YP_663866.1 5185872 R 342610 CDS YP_663867.1 109900612 4176104 complement(5186087..5186449) 1 NC_008228.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: pmu:PM1163 ribonuclease P; ribonuclease P protein component 5186449 4176104 Patl_4314 Pseudoalteromonas atlantica T6c ribonuclease P protein component YP_663867.1 5186087 R 342610 CDS YP_663868.1 109900613 4176105 complement(5186459..5186593) 1 NC_008228.1 PFAM: ribosomal protein L34; KEGG: cps:CPS_5053 ribosomal protein L34; 50S ribosomal protein L34 5186593 4176105 Patl_4315 Pseudoalteromonas atlantica T6c 50S ribosomal protein L34 YP_663868.1 5186459 R 342610 CDS