-- dump date 20140620_001208 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 754252000001 SEQ_END SEQ_END NC_014215.1 2616384 2616384 DR NC_014215.1; contig end 2616384..2616384 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 YP_003686962.1 CDS dnaA NC_014215.1 241 1707 D DnaA, ATPase involved in DNA replication initiation; chromosomal replication initiator protein 241..1707 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282011 YP_003686963.1 CDS PFREUD_00020 NC_014215.1 1682 3151 R Multidrug resistance transporter, MFS superfamily protein complement(1682..3151) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283507 YP_003686964.1 CDS PFREUD_00030 NC_014215.1 3393 4010 D transcriptional regulator 3393..4010 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282012 YP_003686965.1 CDS SqdX NC_014215.1 4007 5188 R 1,4-alpha-D-glucan <=> 1,4-alpha-D-glucan; glycosyltransferase family protein complement(4007..5188) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282013 YP_003686966.1 CDS sqdB NC_014215.1 5202 6449 R UDP-glucose + HSO3- <=> UDP-6-sulfoquinovose + H2O; UDP-sulfoquinovose synthase complement(5202..6449) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284297 YP_003686967.1 CDS PFREUD_00060 NC_014215.1 6930 7865 D ABC transporter ATP-binding protein 6930..7865 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284296 YP_003686968.1 CDS PFREUD_00070 NC_014215.1 7804 10425 D ABC transporter 7804..10425 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282014 YP_003686969.1 CDS dnaN NC_014215.1 12301 13461 D DNA polymerase III subunit beta 12301..13461 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282015 YP_003686970.1 CDS recF NC_014215.1 13535 14836 D RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage; DNA replication and repair protein RecF 13535..14836 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283518 YP_003686971.1 CDS PFREUD_00100 NC_014215.1 14748 15611 D hypothetical protein 14748..15611 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284165 YP_003686972.1 CDS PFREUD_00110 NC_014215.1 15864 17531 D hypothetical protein 15864..17531 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282016 YP_003686973.1 CDS PFREUD_00120 NC_014215.1 17774 18334 D hypothetical protein 17774..18334 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282017 YP_003686974.1 CDS PFREUD_00130 NC_014215.1 18375 18449 D hypothetical protein 18375..18449 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282018 YP_003686975.1 CDS tnpA NC_014215.1 18416 19723 D transposase 18416..19723 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282019 YP_003686976.1 CDS PFREUD_00140 NC_014215.1 19746 20222 D hypothetical protein 19746..20222 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284350 YP_003686977.1 CDS gyrB2 NC_014215.1 20643 22685 D DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings. ATP-dependent breakage, passage and rejoining of double-stranded DNA. Belongs to the type II topoisomerase family; DNA gyrase subunit B 20643..22685 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282020 YP_003686978.1 CDS gyrA NC_014215.1 22732 25467 D DNA gyrase subunit A 22732..25467 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283683 YP_003686979.1 CDS PFREUD_00170 NC_014215.1 25689 26573 D hypothetical protein 25689..26573 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283680 YP_003686980.1 CDS PFREUD_00180 NC_014215.1 26704 26979 R hypothetical protein complement(26704..26979) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282021 YP_003686981.1 CDS PFREUD_00190 NC_014215.1 27220 28017 D hypothetical protein 27220..28017 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282022 YP_003686982.1 CDS PFREUD_00200 NC_014215.1 28082 28654 D hypothetical protein 28082..28654 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282023 YP_003686983.1 CDS pflA NC_014215.1 28651 29739 D S-adenosyl-L-methionine + dihydroflavodoxin + [formate C-acetyltransferase]-glycine <=> 5 prime-deoxyadenosine + L-methionine + Flavodoxin semiquinone + [formate C-acetyltransferase]-glycin-2-yl radical; pyruvate-formate lyase-activating enzyme 28651..29739 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282024 YP_003686984.1 CDS PFREUD_00220 NC_014215.1 29896 30414 D hypothetical protein 29896..30414 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284056 YP_003686985.1 CDS PFREUD_00240 NC_014215.1 30652 31098 D hypothetical protein 30652..31098 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282026 YP_003686986.1 CDS PFREUD_00250 NC_014215.1 31113 31571 D hypothetical protein 31113..31571 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282027 YP_003686987.1 CDS PFREUD_00260 NC_014215.1 31608 32018 R hypothetical protein complement(31608..32018) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282028 YP_003686988.1 CDS PFREUD_00280 NC_014215.1 33208 33366 D hypothetical protein 33208..33366 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283805 YP_003686989.1 CDS iol NC_014215.1 33744 34934 D myo-inositol + NAD+ <=> 2,4,6/3,5-Pentahydroxycyclohexanone + NADH + H+; myo-inositol 2-dehydrogenase 33744..34934 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282030 YP_003686990.1 CDS iolT2 NC_014215.1 34951 36603 D myo-inositol transporter 34951..36603 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283782 YP_003686991.1 CDS PFREUD_00310 NC_014215.1 36839 37498 R two-component system response regulator complement(36839..37498) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283791 YP_003686992.1 CDS PFREUD_00320 NC_014215.1 37495 38997 R two-component system sensor kinase complement(37495..38997) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282031 YP_003686993.1 CDS PFREUD_00330 NC_014215.1 39199 40533 R transporter complement(39199..40533) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282032 YP_003686994.1 CDS PFREUD_00340 NC_014215.1 40552 41763 R carboxypeptidase activity; amidohydrolase complement(40552..41763) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282033 YP_003686995.1 CDS PFREUD_00350 NC_014215.1 42453 44192 D ABC transporter 42453..44192 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282034 YP_003686996.1 CDS PFREUD_00360 NC_014215.1 44192 46159 D ABC transporter 44192..46159 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282035 YP_003686997.1 CDS ald NC_014215.1 46374 47489 D L-alanine + H2O + NAD+ = pyruvate + NH3 + NADH; alanine dehydrogenase 46374..47489 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282036 YP_003686998.1 CDS cycA2 NC_014215.1 47857 49395 D D-serine/D-alanine/glycine transporter 47857..49395 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283306 YP_003686999.1 CDS PFREUD_00390 NC_014215.1 49612 50748 R Several members of this family contain peptidoglycan binding domains. So these proteins may use peptidoglycan or a precursor as a substrate.; ErfK/YbiS/YcfS/YnhG complement(49612..50748) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283452 YP_003687000.1 CDS acyP NC_014215.1 51199 51486 D acylphosphatase 51199..51486 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282037 YP_003687001.1 CDS PFREUD_00410 NC_014215.1 51519 52202 R hypothetical protein complement(51519..52202) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283295 YP_003687002.1 CDS PFREUD_00420 NC_014215.1 52333 52842 D A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor.; nitroreductase 52333..52842 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282038 YP_003687003.1 CDS PFREUD_00430 NC_014215.1 53037 54728 D hypothetical protein 53037..54728 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282039 YP_003687004.1 CDS PFREUD_00440 NC_014215.1 54766 55494 R hypothetical protein complement(54766..55494) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282040 YP_003687005.1 CDS PFREUD_00450 NC_014215.1 55317 56333 R hypothetical protein complement(55317..56333) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282041 YP_003687006.1 CDS PFREUD_00460 NC_014215.1 56330 58423 R hypothetical protein complement(56330..58423) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282042 YP_003687007.1 CDS rmlA NC_014215.1 58479 59348 R dTTP + D-glucose 1-phosphate <=> Pyrophosphate + dTDP-glucose; glucose-1-phosphate thymidylyltransferase complement(58479..59348) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282043 YP_003687008.1 CDS PFREUD_00480 NC_014215.1 59488 60258 D transferase activity, transferring glycosyl groups; family 2 glycosyl transferase 59488..60258 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284185 YP_003687009.1 CDS PFREUD_00490 NC_014215.1 60255 60680 D hypothetical protein 60255..60680 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282044 YP_003687010.1 CDS PFREUD_00500 NC_014215.1 60819 61700 D transferase activity, transferring glycosyl groups; family 2 glycosyl transferase 60819..61700 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282045 YP_003687011.1 CDS PFREUD_00510 NC_014215.1 61769 63013 R polysaccharide biosynthesis protein complement(61769..63013) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282046 YP_003687012.1 CDS PFREUD_00520 NC_014215.1 63182 64915 D transferring glycosyl groups; family 2 glycosyl transferase 63182..64915 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282047 YP_003687013.1 CDS PFREUD_00530 NC_014215.1 64998 66530 R possible EPS polymerase; hypothetical protein complement(64998..66530) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282048 YP_003687014.1 CDS rmlC NC_014215.1 66685 68169 R dTDP-4-dehydro-6-deoxy-alpha-D-glucose <=> dTDP-4-dehydro-6-deoxy-L-mannose / The enzyme occurs in a complex with EC 1.1.1.133 dTDP-4-dehydrorhamnose reductase/ dTDP-6-deoxy-L-mannose + NADP+ <=> dTDP-4-dehydro-6-deoxy-L-mannose + NADPH + H+; dTDP-4-dehydrorhamnose reductase / dTDP-4-dehydrorhamnose 3,5-epimerase complement(66685..68169) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282049 YP_003687015.1 CDS rmlB NC_014215.1 68150 69148 R dTDP-glucose <=> dTDP-4-dehydro-6-deoxy-alpha-D-glucose + H2O / dTDP-glucose <=> 4,6-Dideoxy-4-oxo-dTDP-D-glucose + H2O; DTDP-glucose 4,6-dehydratase complement(68150..69148) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284187 YP_003687016.1 CDS lspA NC_014215.1 69279 73313 R extracted as s-layer proteins; large surface protein A complement(69279..73313) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284186 YP_003687017.1 CDS glf NC_014215.1 73606 74793 D Molecular function: UDP-galactopyranose mutase activity, Biological process: lipopolysaccharide biosynthetic process. UDP-D-galactopyranose = UDP-D-galacto-1,4-furanose.; UDP-galactopyranose mutase 73606..74793 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283836 YP_003687018.1 CDS gtfA NC_014215.1 74790 76802 D transfer of sugar; family 2 glycosyltransferase 74790..76802 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283611 YP_003687019.1 CDS tagG1 NC_014215.1 76771 77691 D sugar ABC transporter permease 76771..77691 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283667 YP_003687020.1 CDS tagG2 NC_014215.1 77691 78461 D sugar ABC transporter 77691..78461 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284310 YP_003687021.1 CDS gtfB NC_014215.1 78574 80982 R glycosyltransferase complement(78574..80982) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284311 YP_003687022.1 CDS gtfC NC_014215.1 81158 82015 R transferase activity transferring glycosyl groups; family 2 glycosyltransferase complement(81158..82015) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283668 YP_003687023.1 CDS gtfD NC_014215.1 82012 82974 R transferase activity transferring glycosyl groups; family 2 glycosyl transferase complement(82012..82974) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283669 YP_003687024.1 CDS trxA2 NC_014215.1 83198 83584 R thioredoxin complement(83198..83584) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283670 YP_003687025.1 CDS PFREUD_00650 NC_014215.1 83619 84062 R signal peptid detected according to SignalP. 3 TM domains according to TMHMM; hypothetical protein complement(83619..84062) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284436 YP_003687026.1 CDS PFREUD_00660 NC_014215.1 84556 84666 D hypothetical protein 84556..84666 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282050 YP_003687027.1 CDS PFREUD_00670 NC_014215.1 85247 86044 R 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(85247..86044) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282051 YP_003687028.1 CDS PFREUD_00680 NC_014215.1 86044 86850 R dehydrogenase complement(86044..86850) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282052 YP_003687029.1 CDS ackA NC_014215.1 86953 88143 R ATP + Propanoate <=> ADP + Propanoyl phosphate / ATP + acetate <=> ADP + acetyl phosphate; acetate kinase complement(86953..88143) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282053 YP_003687030.1 CDS pta NC_014215.1 88304 89836 R acetyl-CoA + Orthophosphate <=> CoA + acetyl phosphate / Propanoyl-CoA + Orthophosphate <=> Propanoyl phosphate + CoA; phosphate acetyltransferase complement(88304..89836) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283290 YP_003687031.1 CDS hepA NC_014215.1 90014 93412 R helicase complement(90014..93412) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284134 YP_003687032.1 CDS tnpA NC_014215.1 94210 94494 D transposase IS3/IS911 94210..94494 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283697 YP_003687033.1 CDS int NC_014215.1 94557 95360 D integrase 94557..95360 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284351 YP_003687034.1 CDS PFREUD_00720 NC_014215.1 95357 96445 D hypothetical protein 95357..96445 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283761 YP_003687035.1 CDS PFREUD_00730 NC_014215.1 96463 97488 R hypothetical protein complement(96463..97488) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282054 YP_003687036.1 CDS PFREUD_00740 NC_014215.1 97697 97771 D hypothetical protein 97697..97771 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282055 YP_003687037.1 CDS tnpA NC_014215.1 97738 99045 D transposase 97738..99045 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282056 YP_003687038.1 CDS aslB NC_014215.1 99104 100267 D phenol sulfate + H(2)O = a phenol + sulfate; arylsulfatase 99104..100267 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284352 YP_003687039.1 CDS xylB NC_014215.1 100696 102252 D ATP + D-Xylulose <=> ADP + D-Xylulose 5-phosphate; xylulokinase 100696..102252 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283358 YP_003687040.1 CDS gpsA NC_014215.1 102305 103357 D sn-glycerol 3-phosphate + NAD+ <=> glycerone phosphate + NADH + H+ / sn-glycerol 3-phosphate + NADP+ <=> glycerone phosphate + NADPH + H+; glycerol-3-phosphate dehydrogenase [NAD(P)+] 102305..103357 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284482 YP_003687041.1 CDS deoR1 NC_014215.1 103431 104207 D transcriptional regulator 103431..104207 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283657 YP_003687042.1 CDS alkA NC_014215.1 104640 105638 D 3-methyladenine DNA glycosylase 104640..105638 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283487 YP_003687043.1 CDS PFREUD_00800 NC_014215.1 105638 106897 D MFS protein 105638..106897 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283309 YP_003687044.1 CDS PFREUD_00810 NC_014215.1 106926 108353 R ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.; histidine kinase sensor protein complement(106926..108353) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282057 YP_003687045.1 CDS PFREUD_00820 NC_014215.1 108350 109045 R two-component response regulator complement(108350..109045) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282058 YP_003687046.1 CDS PFREUD_00830 NC_014215.1 109052 109966 R In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly.; peptidase E complement(109052..109966) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282059 YP_003687047.1 CDS ptpA NC_014215.1 110022 110486 R protein tyrosine phosphate + H2O <=> protein tyrosine + Orthophosphate; protein-tyrosine-phosphatase complement(110022..110486) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282060 YP_003687048.1 CDS PFREUD_00850 NC_014215.1 110483 110863 R hypothetical protein complement(110483..110863) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284136 YP_003687049.1 CDS argF NC_014215.1 111002 112006 D carbamoyl phosphate + L-Ornithine <=> Orthophosphate + L-Citrulline; ornithine carbamoyltransferase 111002..112006 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282061 YP_003687050.1 CDS mug NC_014215.1 112010 112609 D Excises ethenocytosine and uracil, which can arise by alkylation or deamination of cytosine, respectively, from the corresponding mispairs with guanine in ds-DNA. It is capable of hydrolyzing the carbon-nitrogen bond between the sugar-phosphate backbone of the DNA and the mispaired base. Required for DNA damage lesion repair in stationary-phase cells; G/U mismatch-specific DNA glycosylase 112010..112609 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283331 YP_003687051.1 CDS noxB NC_014215.1 112893 113681 D oxidoreductase 112893..113681 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283915 YP_003687052.1 CDS tnpA NC_014215.1 113648 115003 D transposase 113648..115003 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283956 YP_003687053.1 CDS PFREUD_00890 NC_014215.1 114858 115205 D hypothetical protein 114858..115205 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284353 YP_003687054.1 CDS PFREUD_00900 NC_014215.1 115228 116322 R tRNA processing ribonuclease BN complement(115228..116322) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282062 YP_003687055.1 CDS PFREUD_00910 NC_014215.1 116385 116948 R hypothetical protein complement(116385..116948) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282063 YP_003687056.1 CDS PFREUD_00920 NC_014215.1 116945 117106 R hypothetical protein complement(116945..117106) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282064 YP_003687057.1 CDS PFREUD_00930 NC_014215.1 117132 118241 D hypothetical protein 117132..118241 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282065 YP_003687058.1 CDS PFREUD_00940 NC_014215.1 118259 118624 R hypothetical protein complement(118259..118624) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282066 YP_003687059.1 CDS hflC1 NC_014215.1 119045 119770 R stomatin/prohibitin complement(119045..119770) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283649 YP_003687060.1 CDS PFREUD_00970 NC_014215.1 119944 120813 R no peptide signal, 3 TM domains according to TMHMM; hypothetical protein complement(119944..120813) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283698 YP_003687061.1 CDS norB NC_014215.1 120818 123085 R Reduced acceptor + 2 Nitric oxide <=> Nitrous oxide + Acceptor + H2O / Nitric oxide + NADH + H+ <=> Nitrous oxide + NAD+ + H2O; nitric-oxide reductase subunit B complement(120818..123085) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282068 YP_003687062.1 CDS aatA NC_014215.1 122947 123879 R L-Leucyl-tRNA + protein <=> tRNA + L-Leucyl-protein; leucyl/phenylalanyl-tRNA-protein transferase complement(122947..123879) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283955 YP_003687064.1 CDS PFREUD_01010 NC_014215.1 123962 124159 R hypothetical protein complement(123962..124159) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282069 YP_003687065.1 CDS tnpC NC_014215.1 124247 124552 D transposase IS3/IS911 124247..124552 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282070 YP_003687066.1 CDS int NC_014215.1 124549 125457 D integrase 124549..125457 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284401 YP_003687068.1 CDS tnpB NC_014215.1 126139 127026 R transposase complement(126139..127026) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284355 YP_003687069.1 CDS TnpD NC_014215.1 127059 127403 R transposase IS3/IS911 complement(127059..127403) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284395 YP_003687070.1 CDS int NC_014215.1 127442 128350 R integrase complement(127442..128350) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284406 YP_003687071.1 CDS tnpC NC_014215.1 128347 128652 R transposase IS3/IS911 complement(128347..128652) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283763 YP_003687072.1 CDS PFREUD_01030 NC_014215.1 129036 129842 R hypothetical protein complement(129036..129842) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284402 YP_003687073.1 CDS gntK NC_014215.1 130020 131555 R ATP + D-gluconic acid <=> ADP + 6-phospho-D-gluconate; gluconate kinase complement(130020..131555) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282072 YP_003687074.1 CDS mutM1 NC_014215.1 131814 132677 R formamidopyrimidine-DNA glycosylase complement(131814..132677) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283650 YP_003687075.1 CDS aatB NC_014215.1 132670 133395 R L-Leucyl-tRNA + protein <=> tRNA + L-Leucyl-protein; leucyl/phenylalanyl-tRNA-protein transferase complement(132670..133395) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283927 YP_003687076.1 CDS pkaA NC_014215.1 133942 136128 R ATP + protein <=> ADP + phosphoprotein; serine/threonine protein kinase complement(133942..136128) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283286 YP_003687077.1 CDS PFREUD_01080 NC_014215.1 136443 137051 R transglycosylase complement(136443..137051) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284077 YP_003687078.1 CDS gltA2 NC_014215.1 137263 138567 R Citrate + CoA <=> acetyl-CoA + H2O + Oxaloacetate; citrate synthase complement(137263..138567) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282073 YP_003687079.1 CDS PFREUD_01100 NC_014215.1 139026 139829 D hypothetical protein 139026..139829 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283636 YP_003687080.1 CDS PFREUD_01110 NC_014215.1 139940 140809 R hypothetical protein complement(139940..140809) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282074 YP_003687081.1 CDS vpr NC_014215.1 140988 142493 R Subtilases are a family of serine proteases.; peptidase subtilase complement(140988..142493) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282075 YP_003687082.1 CDS alr NC_014215.1 142614 143762 R L-alanine <=> D-alanine; alanine racemase complement(142614..143762) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284472 YP_003687083.1 CDS PFREUD_01140 NC_014215.1 143935 145488 R hypothetical protein complement(143935..145488) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283310 YP_003687084.1 CDS arsR1 NC_014215.1 145532 145876 R ArsR family transcriptional regulator complement(145532..145876) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282076 YP_003687085.1 CDS PFREUD_01170 NC_014215.1 146609 146683 D hypothetical protein 146609..146683 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283957 YP_003687086.1 CDS tnpA NC_014215.1 146650 147957 D transposase 146650..147957 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282077 YP_003687087.1 CDS PFREUD_01180 NC_014215.1 148571 149509 R restriction endonuclease PvuRts1 I complement(148571..149509) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284358 YP_003687088.1 CDS PFREUD_01190 NC_014215.1 149691 149897 R hypothetical protein complement(149691..149897) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282078 YP_003687089.1 CDS PFREUD_01200 NC_014215.1 149916 150023 R hypothetical protein complement(149916..150023) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282079 YP_003687090.1 CDS TnpD NC_014215.1 150653 150997 D transposase IS3/IS911 150653..150997 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284359 YP_003687091.1 CDS tnpB NC_014215.1 151030 151917 D transposase 151030..151917 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284407 YP_003687092.1 CDS PFREUD_01210 NC_014215.1 152007 152960 D may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.; ADP-ribose-1-monophosphate 152007..152960 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284396 YP_003687093.1 CDS PFREUD_01220 NC_014215.1 153075 154643 R DNA polymerase complement(153075..154643) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282081 YP_003687094.1 CDS PFREUD_01250 NC_014215.1 158339 158617 R methylase S, type I restriction enzyme complement(158339..158617) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283722 YP_003687095.1 CDS hsdM1 NC_014215.1 159010 160578 R type I restriction-modification system DNA methylase complement(159010..160578) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282083 YP_003687096.1 CDS PFREUD_01270 NC_014215.1 160633 162456 R ABC transporter ATP-binding protein complement(160633..162456) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283719 YP_003687097.1 CDS PFREUD_01280 NC_014215.1 162453 163652 R ABC transporter permease complement(162453..163652) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282084 YP_003687098.1 CDS panE1 NC_014215.1 163854 164843 R (R)-Pantoate + NADP+ <=> 2-Dehydropantoate + NADPH + H+; 2-dehydropantoate 2-reductase complement(163854..164843) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282085 YP_003687099.1 CDS PPA1976 NC_014215.1 165075 166814 D para-aminobenzoate synthase 165075..166814 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283996 YP_003687100.1 CDS PFREUD_01310 NC_014215.1 166657 167760 D hypothetical protein 166657..167760 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284103 YP_003687101.1 CDS PFREUD_01320 NC_014215.1 168053 168733 R hypothetical protein complement(168053..168733) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282086 YP_003687102.1 CDS pheA NC_014215.1 169344 170330 D L-Arogenate <=> L-Phenylalanine + H2O + CO2 and Prephenate <=> Phenylpyruvate + H2O + CO2; prephenate dehydratase 169344..170330 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282087 YP_003687103.1 CDS PFREUD_01340 NC_014215.1 170210 171814 R diacylglycerol kinase complement(170210..171814) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284066 YP_003687104.1 CDS serS1 NC_014215.1 171962 173236 D ATP + L-serine + tRNA(Ser) <=> AMP + Pyrophosphate + L-Seryl-tRNA(Ser); seryl-tRNA synthetase 171962..173236 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282088 YP_003687105.1 CDS PFREUD_01360 NC_014215.1 173357 174037 D hypothetical protein 173357..174037 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284279 YP_003687106.1 CDS PFREUD_01370 NC_014215.1 174082 174180 R hypothetical protein complement(174082..174180) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282089 YP_003687107.1 CDS ptsG/ptsM NC_014215.1 174177 177149 R PTS system mannose-specific EIIBCA component complement(174177..177149) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282090 YP_003687108.1 CDS PFREUD_01390 NC_014215.1 177399 178793 D exonuclease 177399..178793 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284137 YP_003687109.1 CDS PFREUD_01400 NC_014215.1 178790 179509 D transcriptional regulator 178790..179509 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282091 YP_003687110.1 CDS PFREUD_01410 NC_014215.1 179674 180795 D ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.; histidine kinase 179674..180795 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282092 YP_003687111.1 CDS PFREUD_01420 NC_014215.1 180857 181504 R hypothetical protein complement(180857..181504) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282093 YP_003687112.1 CDS tpx NC_014215.1 181865 182362 D peroxydase. Has antioxidant activity. Could remove peroxides or H(2)O(2); thiol peroxidase 181865..182362 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282094 YP_003687113.1 CDS npdA NC_014215.1 182530 183276 R Modulates the activities of several enzymes which are inactive in their acetylated form. NAD+ + an acetylprotein = nicotinamide + O-acetyl-ADP-ribose + a protein; Silent information regulator protein Sir2 /NAD-dependent deacetylase complement(182530..183276) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284417 YP_003687114.1 CDS cpsA1 NC_014215.1 183477 185186 D transcriptional regulator 183477..185186 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283958 YP_003687115.1 CDS argG NC_014215.1 185841 187277 R ATP + L-Citrulline + L-aspartate <=> AMP + Pyrophosphate + N-(L-arginino)succinate; argininosuccinate synthase complement(185841..187277) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283445 YP_003687116.1 CDS PFREUD_01470 NC_014215.1 187439 188410 R NADPH:quinone reductase complement(187439..188410) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283332 YP_003687117.1 CDS PFREUD_01490 NC_014215.1 188660 189097 D hypothetical protein 188660..189097 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282096 YP_003687118.1 CDS PFREUD_01500 NC_014215.1 189479 192067 R transcriptional regulator complement(189479..192067) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282097 YP_003687119.1 CDS PFREUD_01510 NC_014215.1 189510 189719 D hypothetical protein 189510..189719 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282098 YP_003687120.1 CDS PFREUD_01540 NC_014215.1 193036 193290 R hypothetical protein complement(193036..193290) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282101 YP_003687121.1 CDS vanZ NC_014215.1 193244 194332 R confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te)Arthur M, Depardieu F, Molinas C, Reynolds P, Courvalin P; , Gene 1995;154:87-92.: The vanZ gene of Tn1546 from Enterococcus faecium BM4147 confers resistance to teicoplanin.; VanZ complement(193244..194332) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282102 YP_003687122.1 CDS PFREUD_01560 NC_014215.1 194524 195207 D Short-subunit alcohol dehydrogenase of unknown specificity; short subunit dehydrogenase 194524..195207 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284471 YP_003687123.1 CDS ugpQ1 NC_014215.1 195204 195923 D glycerophosphodiester + H2O <=> Alcohol + sn-glycerol 3-phosphate; glycerophosphoryl diester phosphodiesterase 195204..195923 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282103 YP_003687124.1 CDS aroE NC_014215.1 196022 196840 R Shikimate + NADP+ <=> 3-Dehydroshikimate + NADPH + H+ and Shikimate + NADP+ <=> 5-Dehydroshikimate + NADPH; shikimate 5-dehydrogenase complement(196022..196840) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284452 YP_003687125.1 CDS PFREUD_01590 NC_014215.1 196927 197976 D 3-carboxy-2,5-dihydro-5-oxofuran-2-acetate <=> 3-carboxy-cis,cis-muconate Benzoate degradation via hydroxylation; 3-carboxymuconate cyclase 196927..197976 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283341 YP_003687126.1 CDS dkgA NC_014215.1 198081 198923 D involved in ascorbate production 2-Dehydro-D-gluconate + NADP+ <=> 2,5-Didehydro-D-gluconate + NADPH + H+; 2,5-diketo-D-gluconate reductase A 198081..198923 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282104 YP_003687127.1 CDS PFREUD_01610 NC_014215.1 199077 201533 R lipid transport ?; ABC transporter permease complement(199077..201533) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283502 YP_003687128.1 CDS PFREUD_01620 NC_014215.1 201533 202411 R ABC transporter ATP-binding protein complement(201533..202411) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282105 YP_003687129.1 CDS PFREUD_01630 NC_014215.1 202689 203399 R LuxR family transcriptional regulator complement(202689..203399) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282106 YP_003687130.1 CDS PFREUD_01640 NC_014215.1 203365 204687 R two component sensor kinase complement(203365..204687) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282107 YP_003687131.1 CDS PFREUD_01650 NC_014215.1 204833 205435 R hypothetical protein complement(204833..205435) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282108 YP_003687132.1 CDS PFREUD_01660 NC_014215.1 205658 206263 D hypothetical protein 205658..206263 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282109 YP_003687133.1 CDS PFREUD_01670 NC_014215.1 206513 206740 D acetyltransferase 206513..206740 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282110 YP_003687134.1 CDS PFREUD_01680 NC_014215.1 206829 207062 D hypothetical protein 206829..207062 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282111 YP_003687135.1 CDS fkbP NC_014215.1 207196 207570 R peptidyl-prolyl cis-trans isomerase complement(207196..207570) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282112 YP_003687136.1 CDS CoA NC_014215.1 207567 208265 R Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway.; pantothenate kinase complement(207567..208265) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283563 YP_003687137.1 CDS PFREUD_01710 NC_014215.1 208418 209029 D exonuclease 208418..209029 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283428 YP_003687138.1 CDS cydA NC_014215.1 209381 210883 D cytochrome d ubiquinol oxidase subunit I 209381..210883 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282113 YP_003687139.1 CDS cydB NC_014215.1 210900 212033 D cytochrome D ubiquinol oxidase subunit II 210900..212033 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283453 YP_003687140.1 CDS cydCD NC_014215.1 212057 215701 D ABC transporter 212057..215701 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283454 YP_003687141.1 CDS dapE1 NC_014215.1 216139 217425 R N-Succinyl-LL-2,6-diaminoheptanedioate + H2O <=> succinate + LL-2,6-diaminoheptanedioate; acetylornithine deacetylase complement(216139..217425) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283455 YP_003687142.1 CDS PFREUD_01760 NC_014215.1 216240 216365 R Pfam domain; peptidase complement(216240..216365) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283478 YP_003687143.1 CDS PFREUD_01770 NC_014215.1 216412 216492 D hypothetical protein 216412..216492 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282114 YP_003687144.1 CDS PFREUD_01780 NC_014215.1 217560 219257 R ABC transporter permease complement(217560..219257) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282115 YP_003687145.1 CDS PFREUD_01790 NC_014215.1 219711 219860 R hypothetical protein complement(219711..219860) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282116 YP_003687146.1 CDS tetR2 NC_014215.1 219839 220333 R TetR family transcriptional regulator complement(219839..220333) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282117 YP_003687147.1 CDS PFREUD_01810 NC_014215.1 220537 220854 D hypothetical protein 220537..220854 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284321 YP_003687149.1 CDS PFREUD_01830 NC_014215.1 221178 222809 D FAD-dependent pyridine nucleotide-disulfide oxidoreductase 221178..222809 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282119 YP_003687150.1 CDS nifJ1 NC_014215.1 222815 226582 D Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase , pyruvate + CoA + oxidized flavodoxin = acetyl-CoA + CO2 + reduced flavodoxin; pyruvate synthase/pyruvate-flavodoxin oxidoreductase 222815..226582 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282120 YP_003687151.1 CDS PFREUD_01850 NC_014215.1 226575 227732 D (S)-dihydroorotate + Oxygen <=> Orotate + H2O2; dihydroorotate dehydrogenase 226575..227732 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283949 YP_003687152.1 CDS dha1 NC_014215.1 227992 229416 R betaine-aldehyde dehydrogenase complement(227992..229416) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282121 YP_003687153.1 CDS PFREUD_01870 NC_014215.1 229967 230266 D hypothetical protein 229967..230266 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283492 YP_003687155.1 CDS PFREUD_01890 NC_014215.1 230301 230510 D hypothetical protein 230301..230510 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282123 YP_003687156.1 CDS PFREUD_01900 NC_014215.1 230582 230716 D hypothetical protein 230582..230716 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282124 YP_003687157.1 CDS PFREUD_01910 NC_014215.1 230802 231002 D hypothetical protein 230802..231002 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282125 YP_003687158.1 CDS PFREUD_01920 NC_014215.1 231284 231904 D hypothetical protein 231284..231904 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282126 YP_003687159.1 CDS PFREUD_01930 NC_014215.1 231901 232857 D hypothetical protein 231901..232857 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282127 YP_003687160.1 CDS int NC_014215.1 233088 234377 R voir cd01189; site-specific recombinase complement(233088..234377) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282128 YP_003687161.1 CDS PFREUD_01950 NC_014215.1 234408 234902 R hypothetical protein complement(234408..234902) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283750 YP_003687162.1 CDS PFREUD_01960 NC_014215.1 235090 235200 D hypothetical protein 235090..235200 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282129 YP_003687163.1 CDS fic NC_014215.1 235383 236693 D filamentation induced by cAMP protein . Fic protein and cAMP are involved in a regulatory mechanism of cell division via folate metabolism. This family contains a central conserved motif HPFXXGNG in most members.; Fic protein 235383..236693 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282130 YP_003687164.1 CDS PFREUD_01980 NC_014215.1 236707 237306 D methyltransferase 236707..237306 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283556 YP_003687165.1 CDS PFREUD_02010 NC_014215.1 240955 241347 D hypothetical protein 240955..241347 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284419 YP_003687166.1 CDS PFREUD_02020 NC_014215.1 241388 241795 D hypothetical protein 241388..241795 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282132 YP_003687167.1 CDS PFREUD_02030 NC_014215.1 241799 242242 R hypothetical protein complement(241799..242242) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282133 YP_003687168.1 CDS PFREUD_02040 NC_014215.1 242316 242981 D hypothetical protein 242316..242981 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282134 YP_003687169.1 CDS rpoD NC_014215.1 242978 243550 D RNA polymerase, sigma-24 subunit, ECF subfamily RpoE 242978..243550 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282135 YP_003687170.1 CDS mar NC_014215.1 243962 244417 R MarR family transcriptional regulator complement(243962..244417) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284232 YP_003687171.1 CDS PFREUD_02070 NC_014215.1 244513 245148 D This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.; NAD-dependent epimerase/dehydratase 244513..245148 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283857 YP_003687172.1 CDS araC1 NC_014215.1 245166 246065 D AraC family transcriptional regulator 245166..246065 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282136 YP_003687173.1 CDS PFREUD_02090 NC_014215.1 246357 248420 R ABC transporter complement(246357..248420) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283322 YP_003687174.1 CDS PFREUD_02100 NC_014215.1 248417 250150 R ABC transporter complement(248417..250150) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282137 YP_003687175.1 CDS PFREUD_02110 NC_014215.1 250150 250842 R transcriptional regulator complement(250150..250842) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282138 YP_003687176.1 CDS folP1 NC_014215.1 250920 251810 R 2-amino-4-hydroxy-6-hydroxymethyl-7, 8-dihydropteridine + 4-aminobenzoate <=> dihydropteroate + H2O / 2-amino-7, 8-dihydro-4-hydroxy-6-(diphosphooxymethyl)pteridine + 4-aminobenzoate <=> Pyrophosphate + dihydropteroate; dihydropteroate synthase complement(250920..251810) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282139 YP_003687177.1 CDS proY NC_014215.1 252063 253565 D permease 252063..253565 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283572 YP_003687178.1 CDS PFREUD_02140 NC_014215.1 253702 254088 D hypothetical protein 253702..254088 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284124 YP_003687179.1 CDS PFREUD_02150 NC_014215.1 254360 255019 D methyltransferase 254360..255019 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282140 YP_003687180.1 CDS PFREUD_02160 NC_014215.1 255309 257003 D ABC transporter ATP-binding protein 255309..257003 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282141 YP_003687181.1 CDS lysS NC_014215.1 257147 258754 D ATP + L-lysine + tRNA(Lys) <=> AMP + Pyrophosphate + L-Lysyl-tRNA; lysyl-tRNA synthetase 257147..258754 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282142 YP_003687182.1 CDS PFREUD_02180 NC_014215.1 258940 259662 R methyltransferase complement(258940..259662) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283845 YP_003687183.1 CDS bkdA1 NC_014215.1 259807 260919 D Similar to Swiss-Prot entries Q9I1M2 and P09060; 2-oxoisovalerate dehydrogenase subunit alpha 259807..260919 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282143 YP_003687184.1 CDS bkdA2 NC_014215.1 260916 261890 D 44% identity with Swiss-Prot entry P09061; 2-oxoisovalerate dehydrogenase subunit beta 260916..261890 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283379 YP_003687185.1 CDS bkdB NC_014215.1 261901 263247 D Similarity to Swiss-Prot entry Q9IMO; dihydrolipoamide branched-subunit transacylase 261901..263247 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283380 YP_003687186.1 CDS PFREUD_02220 NC_014215.1 263473 264507 R hypothetical protein complement(263473..264507) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283381 YP_003687187.1 CDS whiP NC_014215.1 264823 265110 R hypothetical protein complement(264823..265110) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282144 YP_003687188.1 CDS PFREUD_02240 NC_014215.1 265289 266023 D hypothetical protein 265289..266023 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284476 YP_003687189.1 CDS pabA NC_014215.1 266136 266780 D Chorismate + NH3 <=> Anthranilate + pyruvate + H2O Chorismate + L-glutamine <=> Anthranilate + pyruvate + L-glutamate; glutamine amidotransferase 266136..266780 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282145 YP_003687190.1 CDS PFREUD_02260 NC_014215.1 266822 267676 R aldo/keto reductase complement(266822..267676) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283992 YP_003687191.1 CDS PFREUD_02270 NC_014215.1 267796 268317 R hypothetical protein complement(267796..268317) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282146 YP_003687192.1 CDS PFREUD_02280 NC_014215.1 268513 268884 R hypothetical protein complement(268513..268884) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282147 YP_003687193.1 CDS PFREUD_02290 NC_014215.1 269199 272594 R hypothetical protein complement(269199..272594) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282148 YP_003687194.1 CDS PFREUD_02300 NC_014215.1 272752 273492 D hypothetical protein 272752..273492 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282149 YP_003687195.1 CDS htrA2 NC_014215.1 273496 274938 R secreted serine protease, trypsin-like serine proteases complement(273496..274938) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282150 YP_003687196.1 CDS htrA3 NC_014215.1 275491 276855 R Trypsin-like serine protease complement(275491..276855) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283730 YP_003687197.1 CDS tnpC NC_014215.1 277112 277417 D transposase IS3/IS911 277112..277417 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283731 YP_003687198.1 CDS int NC_014215.1 277414 278322 D integrase 277414..278322 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284403 YP_003687199.1 CDS merA NC_014215.1 278836 280191 R Hg + NADP+ + H+ <=> Hg2+ + NADPH; pyridine nucleotide-disulfide oxidoreductase complement(278836..280191) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283764 YP_003687200.1 CDS int NC_014215.1 280341 281759 R integrase complement(280341..281759) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283871 YP_003687201.1 CDS tnpA NC_014215.1 281906 283213 R transposase complement(281906..283213) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283765 YP_003687202.1 CDS PFREUD_02340 NC_014215.1 283180 283254 R hypothetical protein complement(283180..283254) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284360 YP_003687203.1 CDS galE1 NC_014215.1 283456 284451 R UDP-glucose = UDP-galactose; UDP-glucose 4-epimerase complement(283456..284451) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282151 YP_003687204.1 CDS galP NC_014215.1 284497 285885 R Sodium:galactoside symporter complement(284497..285885) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283592 YP_003687205.1 CDS lacZ NC_014215.1 285908 288976 R Lactose + H2O <=> alpha-D-glucose + D-Galactose; beta-galactosidase complement(285908..288976) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283597 YP_003687206.1 CDS PFREUD_02390 NC_014215.1 289289 290278 D transcriptional regulator 289289..290278 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283924 YP_003687207.1 CDS int NC_014215.1 290240 291073 R integrase core domain. integrase mediates integration of a DNA copy of the viral genome into the host chromosome.; integrase complement(290240..291073) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282152 YP_003687208.1 CDS PFREUD_02400 NC_014215.1 290327 290506 D hypothetical protein 290327..290506 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283766 YP_003687209.1 CDS PFREUD_02410 NC_014215.1 290427 290513 D hypothetical protein 290427..290513 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282153 YP_003687210.1 CDS tnp NC_014215.1 291097 291420 R transposase IS3/IS911 complement(291097..291420) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282154 YP_003687211.1 CDS caiA NC_014215.1 291647 292783 D fatty acid metabolism and xenobiotic degradation; crotonobetainyl-CoA dehydrogenase 291647..292783 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284346 YP_003687212.1 CDS caiB NC_014215.1 292853 294079 D Engemann et al. Cai locus and corresponding enzymes of Proteus sp.; crotonobetainyl-CoA:carnitine CoA-transferase 292853..294079 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283388 YP_003687213.1 CDS caiC NC_014215.1 294104 295705 D Could catalyze the transfer of CoA to carnitine, generating the initial carnitinyl-CoA needed for the caiB reaction cycle; crotonobetaine/carnitine-CoA ligase 294104..295705 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283389 YP_003687214.1 CDS maoC NC_014215.1 295702 296580 D MaoC acyl dehydratase 295702..296580 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283390 YP_003687215.1 CDS yaaU NC_014215.1 296791 298149 D Belongs to the major facilitator superfamily. Sugar transporter; metabolite transport protein YaaU 296791..298149 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283854 YP_003687216.1 CDS PFREUD_02470 NC_014215.1 298154 298798 D beta-lactamase-like protein 298154..298798 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284483 YP_003687217.1 CDS fixA NC_014215.1 298982 299737 D Required for anaerobic carnitine reduction. May bring reductant to caiA; electron transfer flavoprotein FixA 298982..299737 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282155 YP_003687218.1 CDS fixB NC_014215.1 299774 300646 D Required for anaerobic carnitine reduction. May bring reductant to caiA; electron transfer flavoprotein FixB 299774..300646 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283559 YP_003687219.1 CDS fixC NC_014215.1 300649 301953 D electron transfer flavoprotein FixC 300649..301953 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283560 YP_003687220.1 CDS fixX NC_014215.1 301967 302260 D Ferredoxin-like protein fixX 301967..302260 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283561 YP_003687221.1 CDS PFREUD_02520 NC_014215.1 304364 306136 D DNA or RNA helicase 304364..306136 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283562 YP_003687222.1 CDS PFREUD_02530 NC_014215.1 306389 307060 D hypothetical protein 306389..307060 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282156 YP_003687223.1 CDS udgA NC_014215.1 307148 308566 R UDP-glucose + H2O + 2 NAD+ <=> UDP-glucuronate + 2 NADH + H+; UDP-glucose 6-dehydrogenase complement(307148..308566) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282157 YP_003687224.1 CDS argS NC_014215.1 308658 310292 D ATP + L-arginine + tRNA(Arg) <=> AMP + Pyrophosphate + L-arginyl-tRNA(Arg); arginyl-tRNA synthetase 308658..310292 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284450 YP_003687225.1 CDS fepC3 NC_014215.1 310470 311360 R FepC complement(310470..311360) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283337 YP_003687226.1 CDS PFREUD_02570 NC_014215.1 311357 312322 R ABC transporter permease complement(311357..312322) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283550 YP_003687227.1 CDS PFREUD_02580 NC_014215.1 312436 313494 R ABC transporter permease complement(312436..313494) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282158 YP_003687228.1 CDS PFREUD_02590 NC_014215.1 313742 314737 D ABC transporter 313742..314737 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282159 YP_003687229.1 CDS ppgK NC_014215.1 314916 315701 R (phosphate)n + D-glucose = (phosphate)n-1 + D-glucose 6-phosphate; polyphosphate glucokinase complement(314916..315701) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282160 YP_003687230.1 CDS PFREUD_02610 NC_014215.1 315813 317210 R Sodium:sulfate symporter transmembrane complement(315813..317210) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284108 YP_003687231.1 CDS galE2 NC_014215.1 317523 318497 D # UDP-glucose <=> UDP-D-galactose dTDP-glucose <=> dTDP-galactose; UDP-glucose 4-epimerase 317523..318497 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282161 YP_003687232.1 CDS tetR3 NC_014215.1 318544 319236 R TetR family transcriptional regulator complement(318544..319236) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283593 YP_003687233.1 CDS PFREUD_02640 NC_014215.1 319561 321960 D D-glucoside + H2O <=> ROH + alpha-D-glucose; beta-glucosidase 319561..321960 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284322 YP_003687234.1 CDS PFREUD_02650 NC_014215.1 322362 323750 D sugar transporter 322362..323750 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282162 YP_003687235.1 CDS PFREUD_02660 NC_014215.1 323743 325419 D metallophosphoesterase 323743..325419 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282163 YP_003687236.1 CDS PFREUD_02670 NC_014215.1 325426 326154 D MgtC, Mg2+ transporter protein 325426..326154 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282164 YP_003687237.1 CDS tnpA NC_014215.1 326224 327531 R transposase complement(326224..327531) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282165 YP_003687238.1 CDS PFREUD_02680 NC_014215.1 327498 327572 R hypothetical protein complement(327498..327572) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284361 YP_003687239.1 CDS PFREUD_02690 NC_014215.1 327613 327705 R hypothetical protein complement(327613..327705) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282166 YP_003687240.1 CDS glpT NC_014215.1 327879 329297 D glycerol-3-phosphate transporter 327879..329297 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282167 YP_003687241.1 CDS PFREUD_02710 NC_014215.1 329587 329790 R hypothetical protein complement(329587..329790) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283634 YP_003687242.1 CDS PFREUD_02720 NC_014215.1 329883 330326 R NUDIX hydrolase complement(329883..330326) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282168 YP_003687243.1 CDS naeIV NC_014215.1 330410 330844 R very short patch repair endonuclease NaeI complement(330410..330844) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282169 YP_003687244.1 CDS PFREUD_02740 NC_014215.1 330828 336464 R hypothetical protein complement(330828..336464) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283940 YP_003687245.1 CDS PFREUD_02750 NC_014215.1 336538 337989 R hypothetical protein complement(336538..337989) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282170 YP_003687246.1 CDS PFREUD_02760 NC_014215.1 337979 340090 R hypothetical protein complement(337979..340090) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282171 YP_003687247.1 CDS dcm NC_014215.1 340087 341745 R S-adenosyl-L-methionine + DNA <=> S-adenosyl-L-homocysteine + DNA 5-methylcytosine and S-adenosyl-L-methionine + DNA cytosine <=> S-adenosyl-L-homocysteine + DNA 5-methylcytosine; DNA (cytosine-5-)-methyltransferase complement(340087..341745) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282172 YP_003687248.1 CDS pfkB NC_014215.1 341894 342898 R carbohydrate kinase PfkB complement(341894..342898) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283481 YP_003687249.1 CDS codB NC_014215.1 342895 344415 R cytosine/purines uracil thiamine allantoin permease complement(342895..344415) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284055 YP_003687250.1 CDS impA NC_014215.1 344593 345444 R inositol monophosphatase complement(344593..345444) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283439 YP_003687251.1 CDS PFREUD_02810 NC_014215.1 345437 346885 R Major facilitator superfamily MFS_1 complement(345437..346885) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283743 YP_003687252.1 CDS mmgA NC_014215.1 347265 348419 R 2 acetyl-CoA <=> CoA + acetoacetyl-CoA and acetyl-CoA + Butanoyl-CoA <=> CoA + 3-Oxohexanoyl-CoA; acetyl-CoA C-acetyltransferase complement(347265..348419) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282173 YP_003687253.1 CDS menE1 NC_014215.1 348416 349474 R ATP + 2-Succinylbenzoate + CoA <=> AMP + Pyrophosphate + 2-Succinylbenzoyl-CoA; o-succinylbenzoate--CoA ligase complement(348416..349474) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283891 YP_003687254.1 CDS PFREUD_02840 NC_014215.1 349644 349862 D hypothetical protein 349644..349862 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283867 YP_003687255.1 CDS PFREUD_02850 NC_014215.1 349917 350732 D hypothetical protein 349917..350732 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282174 YP_003687256.1 CDS PFREUD_02860 NC_014215.1 350666 350941 D hypothetical protein 350666..350941 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282175 YP_003687257.1 CDS dps NC_014215.1 351099 351626 D Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation.; Starvation-inducible DNA-binding protein 351099..351626 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282176 YP_003687258.1 CDS PFREUD_02880 NC_014215.1 351918 351992 D hypothetical protein 351918..351992 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283522 YP_003687259.1 CDS tnpA NC_014215.1 351959 353077 D transposase 351959..353077 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282177 YP_003687260.1 CDS tnpA NC_014215.1 353065 354138 R transposase complement(353065..354138) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284362 YP_003687262.1 CDS tnpA NC_014215.1 354264 354548 D transposase IS3/IS911 354264..354548 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282178 YP_003687263.1 CDS int NC_014215.1 354611 355414 D integrase 354611..355414 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284364 YP_003687264.1 CDS PFREUD_02900 NC_014215.1 355411 355800 D hypothetical protein 355411..355800 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283767 YP_003687265.1 CDS PFREUD_02910 NC_014215.1 355871 356287 R hypothetical protein complement(355871..356287) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282179 YP_003687266.1 CDS PFREUD_02920 NC_014215.1 356341 358491 R peptidoglycan binding domain-containing protein complement(356341..358491) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282180 YP_003687267.1 CDS tnpA NC_014215.1 359295 360410 D transposase 359295..360410 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282181 YP_003687268.1 CDS PFREUD_02930 NC_014215.1 360502 361074 D hypothetical protein 360502..361074 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284365 YP_003687269.1 CDS PFREUD_02940 NC_014215.1 361288 361425 D hypothetical protein 361288..361425 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282182 YP_003687270.1 CDS PFREUD_02950 NC_014215.1 363331 368112 R helicase complement(363331..368112) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284367 YP_003687271.1 CDS PFREUD_02960 NC_014215.1 368312 368791 R hypothetical protein complement(368312..368791) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282184 YP_003687272.1 CDS PFREUD_02970 NC_014215.1 368791 369183 R proteins of Bacteriophage / transcription regulator complement(368791..369183) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282185 YP_003687273.1 CDS PFREUD_02980 NC_014215.1 369285 369641 R hypothetical protein complement(369285..369641) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282186 YP_003687274.1 CDS PFREUD_02990 NC_014215.1 369793 369888 R hypothetical protein complement(369793..369888) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282187 YP_003687275.1 CDS tnpA NC_014215.1 369885 370958 R over representated in Mycobacterium smegmatis; transposase complement(369885..370958) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282188 YP_003687276.1 CDS PFREUD_03000 NC_014215.1 370998 371243 D hypothetical protein 370998..371243 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284368 YP_003687277.1 CDS PFREUD_03010 NC_014215.1 371245 371397 D hypothetical protein 371245..371397 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282189 YP_003687278.1 CDS PFREUD_03020 NC_014215.1 371510 372490 D hypothetical protein 371510..372490 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282190 YP_003687279.1 CDS PFREUD_03030 NC_014215.1 373941 374738 R hypothetical protein complement(373941..374738) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284369 YP_003687280.1 CDS tnpA NC_014215.1 374854 376161 R transposase complement(374854..376161) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282192 YP_003687281.1 CDS PFREUD_03040 NC_014215.1 376128 376202 R hypothetical protein complement(376128..376202) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284370 YP_003687282.1 CDS PFREUD_03060 NC_014215.1 376726 377421 R hypothetical protein complement(376726..377421) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282194 YP_003687283.1 CDS PFREUD_03070 NC_014215.1 377606 379162 R hypothetical protein complement(377606..379162) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282195 YP_003687284.1 CDS ppaX NC_014215.1 379670 380323 D Pyrophosphate + H2O <=> 2 Orthophosphate; pyrophosphatase PpaX 379670..380323 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282196 YP_003687285.1 CDS serA NC_014215.1 380402 381451 D 3-phosphoglycerate + NAD+ <=> 3-phosphonooxypyruvate + NADH + H+ glycine, serine, threonine metabolism; phosphoglycerate dehydrogenase 380402..381451 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284106 YP_003687286.1 CDS kduD NC_014215.1 381491 382303 D 2-Dehydro-3-deoxy-D-gluconate + NAD+ <=> (4S)-4,6-dihydroxy-2,5-dioxohexanoate + NADH + H+ and 2-deoxy-D-gluconate + NAD+ <=> 3-Dehydro-2-deoxy-D-gluconate + NADH + H+; 2-deoxy-D-gluconate 3-dehydrogenase 381491..382303 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284276 YP_003687287.1 CDS cat NC_014215.1 382531 384054 R acyl-CoA + acetate = a fatty acid anion + acetyl-CoA OR: succinate + acetyl-CoA = succinyl-CoA + acetate OR (in Pf): succinate + propionyl-CoA = succinyl-CoA + propionate; coenzyme A transferase complement(382531..384054) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283801 YP_003687288.1 CDS PFREUD_03120 NC_014215.1 384178 385368 R hypothetical protein complement(384178..385368) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283395 YP_003687289.1 CDS PFREUD_03130 NC_014215.1 385681 387021 D hypothetical protein 385681..387021 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282197 YP_003687290.1 CDS PFREUD_03140 NC_014215.1 387159 387776 R Young IG, Gibson F. Biochim. Biophys. Acta. 177 (1969) 401-11. Isochorismate + H2O <=> 2,3-dihydro-2,3-dihydroxybenzoate + pyruvate; isochorismatase hydrolase complement(387159..387776) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282198 YP_003687291.1 CDS PFREUD_03150 NC_014215.1 387889 388497 R hypothetical protein complement(387889..388497) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282199 YP_003687292.1 CDS PF2369 NC_014215.1 388626 389480 R aldo/keto reductase complement(388626..389480) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282200 YP_003687293.1 CDS PFREUD_03170 NC_014215.1 389583 390356 R hypothetical protein complement(389583..390356) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284040 YP_003687294.1 CDS rsmC NC_014215.1 390563 391552 R S-adenosyl-L-methionine + rRNA <=> S-adenosyl-L-homocysteine + rRNA containing N2-methylguanine; rRNA (guanine-N2-)-methyltransferase complement(390563..391552) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282201 YP_003687295.1 CDS matE NC_014215.1 391645 392967 D These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs.; Multi antimicrobial extrusion protein MatE 391645..392967 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284254 YP_003687296.1 CDS mrr NC_014215.1 393183 394094 R Involved in the acceptance of foreign DNA which is modified. Restricts both adenine- and cytosine-methylated DNA.; restriction system protein complement(393183..394094) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283861 YP_003687297.1 CDS PFREUD_03210 NC_014215.1 394636 395529 D hypothetical protein 394636..395529 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283910 YP_003687299.1 CDS ppdk NC_014215.1 395738 398395 D ATP + pyruvate + Orthophosphate <=> AMP + phosphoenolpyruvate + Pyrophosphate Cofactor : Magnesium. homodimer; pyruvate phosphate dikinase 395738..398395 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282203 YP_003687300.1 CDS PFREUD_03240 NC_014215.1 398895 401711 D hypothetical protein 398895..401711 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284107 YP_003687301.1 CDS rbsK NC_014215.1 401947 402939 D hypothetical protein 401947..402939 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282204 YP_003687302.1 CDS PFREUD_03260 NC_014215.1 403172 405037 R two component system regulator; sensor protein complement(403172..405037) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284160 YP_003687303.1 CDS PFREUD_03270 NC_014215.1 405018 405746 R highly similar to protein Q9ADN7_STRCO from Streptomyces coelicolor; two component system response regulator complement(405018..405746) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282205 YP_003687304.1 CDS PFREUD_03280 NC_014215.1 406297 407262 D ABC transporter periplasmic protein 406297..407262 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282206 YP_003687305.1 CDS metN NC_014215.1 407259 408524 D methionine import ATP-binding protein metN 407259..408524 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282207 YP_003687306.1 CDS PFREUD_03300 NC_014215.1 408521 409177 D ABC transporter permease 408521..409177 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283882 YP_003687307.1 CDS slh1 NC_014215.1 409301 410917 R S-layer protein complement(409301..410917) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282208 YP_003687308.1 CDS PFREUD_03320 NC_014215.1 410990 411565 R hypothetical protein complement(410990..411565) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284283 YP_003687309.1 CDS padR NC_014215.1 411947 412519 D This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.; PadR family transcriptional regulator 411947..412519 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282209 YP_003687310.1 CDS PFREUD_03340 NC_014215.1 412562 414259 D ABC transporter 412562..414259 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283994 YP_003687311.1 CDS cytX NC_014215.1 414347 415663 R Hydroxymethylpyrimidine transporter CytX complement(414347..415663) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282210 YP_003687312.1 CDS thiD1 NC_014215.1 415742 416608 R ATP + 4-amino-2-methyl-5-phosphomethylpyrimidine <=> ADP + 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate; phosphomethylpyrimidine kinase/ hydroxymethylpyrimidine phosphokinase complement(415742..416608) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283470 YP_003687313.1 CDS thiE1 NC_014215.1 416605 417456 R 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-methyl-5-(2-phosphoethyl)-thiazole <=> Pyrophosphate + Thiamin monophosphate; thiamine-phosphate pyrophosphorylase complement(416605..417456) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284329 YP_003687314.1 CDS thiM NC_014215.1 417453 418313 R ATP + 5-(2-Hydroxyethyl)-4-methylthiazole <=> ADP + 4-methyl-5-(2-phosphoethyl)-thiazole; Hydroxyethylthiazole kinase complement(417453..418313) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284331 YP_003687316.1 CDS aroP NC_014215.1 418741 420135 D Aromatic amino acid transport protein aroP 418741..420135 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282211 YP_003687317.1 CDS PFREUD_03410 NC_014215.1 420252 421202 D Cation-efflux transport protein 420252..421202 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283344 YP_003687318.1 CDS PFREUD_03420 NC_014215.1 421485 421649 R hypothetical protein complement(421485..421649) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282212 YP_003687319.1 CDS PFREUD_03430 NC_014215.1 421683 422237 D hypothetical protein 421683..422237 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282213 YP_003687320.1 CDS PFREUD_03440 NC_014215.1 422300 422413 R hypothetical protein complement(422300..422413) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282214 YP_003687321.1 CDS hflC2 NC_014215.1 422463 423446 R Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.; Stomatin/prohibitin complement(422463..423446) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282215 YP_003687322.1 CDS PFREUD_03460 NC_014215.1 423831 424763 D hypothetical protein 423831..424763 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283699 YP_003687323.1 CDS PFREUD_03470 NC_014215.1 424804 424977 R hypothetical protein complement(424804..424977) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282216 YP_003687324.1 CDS PFREUD_03480 NC_014215.1 425207 425452 R hypothetical protein complement(425207..425452) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282217 YP_003687325.1 CDS tnpA NC_014215.1 425481 426788 R transposase complement(425481..426788) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282218 YP_003687326.1 CDS PFREUD_03490 NC_014215.1 426755 426829 R hypothetical protein complement(426755..426829) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284371 YP_003687327.1 CDS PFREUD_03500 NC_014215.1 426870 426956 R hypothetical protein complement(426870..426956) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282219 YP_003687328.1 CDS tnpA NC_014215.1 427126 427410 D transposase IS3/IS911 427126..427410 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282220 YP_003687329.1 CDS int NC_014215.1 427473 428276 D integrase 427473..428276 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284372 YP_003687330.1 CDS PFREUD_03510 NC_014215.1 428440 428616 R hypothetical protein complement(428440..428616) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283768 YP_003687331.1 CDS PFREUD_03520 NC_014215.1 429006 429428 D hypothetical protein 429006..429428 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282221 YP_003687332.1 CDS PFREUD_03530 NC_014215.1 429343 429615 D hypothetical protein 429343..429615 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282222 YP_003687333.1 CDS PFREUD_03540 NC_014215.1 429616 429738 D hypothetical protein 429616..429738 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282223 YP_003687334.1 CDS PFREUD_03550 NC_014215.1 429796 430095 D hypothetical protein 429796..430095 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282224 YP_003687335.1 CDS pf1861 NC_014215.1 430096 433260 R carboxylic ester hydrolase complement(430096..433260) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282225 YP_003687336.1 CDS PPA1043 NC_014215.1 433496 434812 R anaerobic C4-dicarboxylate transporter complement(433496..434812) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284038 YP_003687337.1 CDS PFREUD_03580 NC_014215.1 435209 435484 R hypothetical protein complement(435209..435484) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284097 YP_003687338.1 CDS PFREUD_03590 NC_014215.1 435942 436691 D hypothetical protein 435942..436691 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282226 YP_003687339.1 CDS PFREUD_03600 NC_014215.1 436781 437023 D hypothetical protein 436781..437023 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282227 YP_003687340.1 CDS PFREUD_03610 NC_014215.1 437135 438190 D zinc-containing alcohol dehydrogenase 437135..438190 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282228 YP_003687341.1 CDS PFREUD_03620 NC_014215.1 438209 439435 D carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. Initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. heterodimer of a small and large subunit. The small subunit promotes the hydrolysis of glutamine to ammonia, which is used by the large subunit to synthesise carbamoyl phosphate.; carbamoylphosphate synthase 438209..439435 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282229 YP_003687342.1 CDS PFREUD_03630 NC_014215.1 439606 440121 D hypothetical protein 439606..440121 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282230 YP_003687343.1 CDS PFREUD_03640 NC_014215.1 440156 440662 R hypothetical protein complement(440156..440662) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282231 YP_003687344.1 CDS PFREUD_03650 NC_014215.1 441518 441631 D hypothetical protein 441518..441631 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282232 YP_003687345.1 CDS PFREUD_03660 NC_014215.1 441628 441822 D hypothetical protein 441628..441822 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282233 YP_003687346.1 CDS PFREUD_03670 NC_014215.1 443107 443229 D hypothetical protein 443107..443229 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282234 YP_003687347.1 CDS PFREUD_03680 NC_014215.1 443868 444170 R hypothetical protein complement(443868..444170) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282235 YP_003687348.1 CDS PFREUD_03690 NC_014215.1 444167 445768 R CRISPR-associated protein Cas1/Cas4 complement(444167..445768) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282236 YP_003687349.1 CDS PFREUD_03700 NC_014215.1 445758 446759 R hypothetical protein complement(445758..446759) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282237 YP_003687350.1 CDS PFREUD_03710 NC_014215.1 446756 449371 R CRISPR-associated HD domain-containing protein complement(446756..449371) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282238 YP_003687351.1 CDS PFREUD_03720 NC_014215.1 449368 450909 R hypothetical protein complement(449368..450909) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282239 YP_003687352.1 CDS PFREUD_03730 NC_014215.1 450911 452110 R hypothetical protein complement(450911..452110) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282240 YP_003687353.1 CDS PFREUD_03750 NC_014215.1 452643 453917 D Threonine dehydratase 452643..453917 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282242 YP_003687354.1 CDS PFREUD_03760 NC_014215.1 454391 454678 D hemerythrin is an oligomeric protein responsible for oxygen (O2) transportation. hemerythrin was discovered in methanotrophic bacterium methylococcus capsulatus.; Hemerythrin HHE cation binding region 454391..454678 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282243 YP_003687355.1 CDS PFREUD_03770 NC_014215.1 454684 455694 D ArsR family transcriptional regulator 454684..455694 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282244 YP_003687356.1 CDS PFREUD_03780 NC_014215.1 455769 457046 D hypothetical protein 455769..457046 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282245 YP_003687357.1 CDS aniA NC_014215.1 457043 459679 D transmembrane and signal peptide (TM HMM and Signal P); copper-containing nitrite reductase 457043..459679 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282246 YP_003687358.1 CDS PFREUD_03800 NC_014215.1 459833 461212 D signal peptide (SignalP), transmembranaire C term (TM HMM) (carboxypeptidase ?); hypothetical protein 459833..461212 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283312 YP_003687359.1 CDS PFREUD_03810 NC_014215.1 461308 462024 D Sortase, Sortase domain; transpeptidase of Gram-positive bacteria, cleaves surface proteins at the LPXTG motif and catalyzes the formation of an amide bond; peptidase C60, sortase A and B 461308..462024 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282247 YP_003687360.1 CDS PFREUD_03820 NC_014215.1 462094 465498 D hypothetical protein 462094..465498 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282248 YP_003687361.1 CDS PFREUD_03830 NC_014215.1 465749 466057 D hypothetical protein 465749..466057 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282249 YP_003687362.1 CDS recR NC_014215.1 466059 466685 D May play a role in DNA repair. It seems to be involved in an recBC-independent recombinational process of DNA repair. It may act with recF and recO; Recombination protein recR 466059..466685 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282250 YP_003687363.1 CDS PFREUD_03850 NC_014215.1 466711 467520 R hypothetical protein complement(466711..467520) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284169 YP_003687364.1 CDS ileS NC_014215.1 467799 471059 D ATP + L-Isoleucine + tRNA(Ile) <=> AMP + Pyrophosphate + L-Isoleucyl-tRNA(Ile); isoleucyl-tRNA synthetase 467799..471059 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282251 YP_003687365.1 CDS PFREUD_03870 NC_014215.1 471186 472172 R oxidoreductase complement(471186..472172) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283737 YP_003687366.1 CDS ask NC_014215.1 472341 473615 D ATP + L-aspartate <=> ADP + 4-phospho-L-aspartate; aspartokinase 472341..473615 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282252 YP_003687367.1 CDS mviN NC_014215.1 473702 475645 D hypothetical protein 473702..475645 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283357 YP_003687368.1 CDS lysX NC_014215.1 475709 477772 D ATP + L-lysine + tRNA(Lys) <=> AMP + Pyrophosphate + L-Lysyl-tRNA; lysyl-tRNA synthetase 475709..477772 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283932 YP_003687369.1 CDS PFREUD_03910 NC_014215.1 477769 478155 R hypothetical protein complement(477769..478155) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283846 YP_003687370.1 CDS frk NC_014215.1 478309 479274 R ATP + D-Fructose <=> ADP + D-Fructose 6-phosphate; fructokinase complement(478309..479274) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282253 YP_003687371.1 CDS PFREUD_03930 NC_014215.1 479517 480995 D aminoacid permease 479517..480995 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283574 YP_003687372.1 CDS PFREUD_03940 NC_014215.1 481091 482809 R hypothetical protein complement(481091..482809) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282254 YP_003687373.1 CDS PFREUD_03950 NC_014215.1 483096 483500 D hypothetical protein 483096..483500 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282255 YP_003687374.1 CDS PFREUD_03960 NC_014215.1 483461 483772 D hypothetical protein 483461..483772 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282256 YP_003687375.1 CDS PFREUD_03970 NC_014215.1 483836 484600 D hypothetical protein 483836..484600 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282257 YP_003687376.1 CDS PFREUD_03980 NC_014215.1 484649 485365 D hypothetical protein 484649..485365 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282258 YP_003687377.1 CDS PFREUD_03990 NC_014215.1 485889 487457 R transporter complement(485889..487457) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282259 YP_003687378.1 CDS purD NC_014215.1 487640 488971 D ATP + 5-phosphoribosylamine + glycine <=> ADP + Orthophosphate + 5prime-phosphoribosylglycinamide; phosphoribosylamine-glycine ligase 487640..488971 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282260 YP_003687379.1 CDS purB NC_014215.1 489000 490433 D N6-(1,2-Dicarboxyethyl)-AMP <=> Fumarate + AMP 1-(5prime-phosphoribosyl)-5-amino-4-(N- succinocarboxamide)-imidazole These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits; adenylosuccinate lyase 489000..490433 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284141 YP_003687380.1 CDS PFREUD_04020 NC_014215.1 490443 491549 R hypothetical protein complement(490443..491549) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284139 YP_003687381.1 CDS purC NC_014215.1 491647 492525 D catalyzes the seventh step of the de novo biosynthesis of purine nucleotides, the conversion of carboximideaminoimidazole ribonucleotide (CAIR) into succinoaminoimidazolecarboximide ribonucleotide (SAICAR). CAIR and aspartic acid react in the presence of ATP and magnesium to form SAICAR.; phosphoribosylaminoimidazole-succinocarboxamide synthase 491647..492525 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282261 YP_003687382.1 CDS purS NC_014215.1 492608 492853 D ATP + 1-(5-phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate + L-aspartate <=> ADP + Orthophosphate + 1-(5-phosphoribosyl)-5-amino-4-(N-succinocarboxamide)- imidazole; phosphoribosylformylglycinamidine synthetase 492608..492853 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284140 YP_003687383.1 CDS purL/purQ NC_014215.1 492855 493532 D ATP + 5prime-phosphoribosyl-N-formylglycinamide + L-glutamine + H2O <=> ADP + Orthophosphate + 2-(formamido)-N1-(5prime-phosphoribosyl)acetamidine + L-glutamate; phosphoribosylformylglycinamidine synthase 1 492855..493532 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284150 YP_003687384.1 CDS PFREUD_04060 NC_014215.1 493611 494309 R hypothetical protein complement(493611..494309) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284147 YP_003687385.1 CDS csbX NC_014215.1 494661 495944 D alpha-ketoglutarate permease 494661..495944 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282262 YP_003687386.1 CDS PFREUD_04080 NC_014215.1 496030 496965 R hypothetical protein complement(496030..496965) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283447 YP_003687387.1 CDS PFREUD_04090 NC_014215.1 497393 498202 D No signal peptide (signalP) and 2 TM domains; hypothetical protein 497393..498202 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282263 YP_003687388.1 CDS tnpA NC_014215.1 498591 498875 D transposase IS3/IS911 498591..498875 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282264 YP_003687389.1 CDS int NC_014215.1 498938 499741 D integrase 498938..499741 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284373 YP_003687390.1 CDS PFREUD_04100 NC_014215.1 499738 499902 D hypothetical protein 499738..499902 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283769 YP_003687391.1 CDS PFREUD_04110 NC_014215.1 501875 502762 R phage major capsid protein, HK97 family complement(501875..502762) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282265 YP_003687392.1 CDS PFREUD_04120 NC_014215.1 502934 503635 R hypothetical protein complement(502934..503635) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282266 YP_003687393.1 CDS PFREUD_04130 NC_014215.1 503632 503868 R hypothetical protein complement(503632..503868) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282267 YP_003687394.1 CDS PFREUD_04140 NC_014215.1 503998 506520 R hypothetical protein complement(503998..506520) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282268 YP_003687395.1 CDS PFREUD_04150 NC_014215.1 506517 507035 R hypothetical protein complement(506517..507035) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282269 YP_003687396.1 CDS PFREUD_04160 NC_014215.1 507032 507196 R hypothetical protein complement(507032..507196) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282270 YP_003687397.1 CDS PFREUD_04170 NC_014215.1 507193 507432 R hypothetical protein complement(507193..507432) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282271 YP_003687398.1 CDS PFREUD_04180 NC_014215.1 507576 507788 R hypothetical protein complement(507576..507788) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282272 YP_003687399.1 CDS PFREUD_04190 NC_014215.1 507831 508019 R hypothetical protein complement(507831..508019) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282273 YP_003687400.1 CDS PFREUD_04200 NC_014215.1 508290 508664 R hypothetical protein complement(508290..508664) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282274 YP_003687401.1 CDS int NC_014215.1 508829 509977 R phage integrase complement(508829..509977) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282275 YP_003687402.1 CDS PFREUD_04230 NC_014215.1 510349 511029 D hypothetical protein 510349..511029 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282276 YP_003687403.1 CDS pf774 NC_014215.1 511551 512789 R carboxylic ester hydrolase complement(511551..512789) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282277 YP_003687404.1 CDS pepB NC_014215.1 512935 513399 R phosphatidylethanolamine-binding protein complement(512935..513399) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284052 YP_003687405.1 CDS PFREUD_04260 NC_014215.1 513433 515985 R DEAD/DEAH box helicase complement(513433..515985) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284025 YP_003687406.1 CDS eda NC_014215.1 516122 516820 D 2-dehydro-3-deoxyphosphogluconate aldolase 516122..516820 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282278 YP_003687407.1 CDS PFREUD_04280 NC_014215.1 517046 518050 D hypothetical protein 517046..518050 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283531 YP_003687408.1 CDS pgi NC_014215.1 518242 519924 D reversible isomerization of glucose-6-phosphate : D-glucose 6-phosphate = D-fructose 6-phosphate; glucose-6-phosphate isomerase 518242..519924 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282279 YP_003687409.1 CDS PFREUD_04300 NC_014215.1 519928 520713 D hypothetical protein 519928..520713 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284058 YP_003687410.1 CDS PFREUD_04310 NC_014215.1 520713 521933 D beta-lactamase 520713..521933 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282280 YP_003687411.1 CDS Arth_4141 NC_014215.1 522315 525101 D FAD-linked oxidase 522315..525101 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282281 YP_003687412.1 CDS fad NC_014215.1 525260 526408 R acyl-CoA dehydrogenase complement(525260..526408) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283355 YP_003687413.1 CDS pf279 NC_014215.1 526794 528125 D recombinant protein active on 1- naphthyl propionate, extracellular (see dherbecourt 2010, AEM); carboxylic ester hydrolase 526794..528125 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283542 YP_003687414.1 CDS PFREUD_04350 NC_014215.1 528122 528622 D hypothetical protein 528122..528622 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284044 YP_003687415.1 CDS sbcC NC_014215.1 528647 531811 R SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3prime->5prime double strand exonuclease that can open hairpins. It also has a 5prim single-strand endonuclease activity; ATP-dependent dsDNA exonuclease SbcC complement(528647..531811) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282282 YP_003687416.1 CDS sbcD NC_014215.1 531811 533061 R SbcD, DNA repair exonuclease complement(531811..533061) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284260 YP_003687417.1 CDS add NC_014215.1 533042 534259 R adenosine + H2O <=> inosine + NH3 and deoxyadenosine + H2O <=> deoxyinosine + NH3 and Cyclic amidines + H2O <=> Cyclic amide + NH3; adenosine deaminase complement(533042..534259) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284261 YP_003687418.1 CDS PFREUD_04390 NC_014215.1 534442 536241 D hypothetical protein 534442..536241 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283298 YP_003687419.1 CDS PFREUD_04400 NC_014215.1 536479 536850 D hypothetical protein 536479..536850 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282283 YP_003687420.1 CDS PFREUD_04410 NC_014215.1 536865 537419 R hypothetical protein complement(536865..537419) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282284 YP_003687421.1 CDS PFREUD_04420 NC_014215.1 537773 538261 R hypothetical protein complement(537773..538261) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282285 YP_003687422.1 CDS PFREUD_04430 NC_014215.1 538598 540355 R thiamine pyrophosphate enzyme complement(538598..540355) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282286 YP_003687423.1 CDS nfa14140 NC_014215.1 540495 542351 R monovalent cation/proton antiporter complement(540495..542351) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282287 YP_003687424.1 CDS PFREUD_04450 NC_014215.1 542470 542730 D hypothetical protein 542470..542730 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283946 YP_003687425.1 CDS PFREUD_04460 NC_014215.1 542672 542845 D hypothetical protein 542672..542845 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282288 YP_003687426.1 CDS marR1 NC_014215.1 542998 543447 R MarR family transcriptional regulator complement(542998..543447) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282289 YP_003687427.1 CDS PFREUD_04480 NC_014215.1 543843 544589 D hypothetical protein 543843..544589 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283858 YP_003687428.1 CDS PPA2042 NC_014215.1 544801 546072 D low-affinity phosphate transport protein 544801..546072 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282290 YP_003687429.1 CDS PFREUD_04500 NC_014215.1 546069 546299 D hypothetical protein 546069..546299 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284104 YP_003687430.1 CDS PFREUD_04510 NC_014215.1 546537 547148 D Reduced riboflavin + NADP+ <=> riboflavin + NADPH + H+; NADH-flavin reductase 546537..547148 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282291 YP_003687431.1 CDS PFREUD_04520 NC_014215.1 547154 547765 D NADH-flavin reductase 547154..547765 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282292 YP_003687432.1 CDS PFREUD_04530 NC_014215.1 547818 549677 R hypothetical protein complement(547818..549677) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282293 YP_003687433.1 CDS hrpA1 NC_014215.1 549768 552359 R ATP-dependent helicase HrpA complement(549768..552359) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282294 YP_003687434.1 CDS cobA NC_014215.1 552428 553201 R * 2 S-adenosyl-L-methionine + Uroporphyrinogen III <=> 2 S-adenosyl-L-homocysteine + Precorrin 2; CobA Uroporphyrinogen III methyltransferase complement(552428..553201) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283717 YP_003687435.1 CDS cbiO1 NC_014215.1 553198 554091 R Part of the ABC transporter complex cbiONQ involved in cobalt import. Responsible for energy coupling to the transport system - The complex is composed of two ATP-binding proteins (cbiO), fused or not, two transmembrane proteins (cbiQ) and a solute-binding protein (cbiN); cobalt ABC transporter ATP-binding protein complement(553198..554091) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283432 YP_003687436.1 CDS cbiQ2 NC_014215.1 554088 554882 R cobalt transport protein CbiQ complement(554088..554882) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283405 YP_003687437.1 CDS cbiN NC_014215.1 554886 555386 R CbiN is part of the active cobalt transport system involved in uptake of cobalt in to the cell involved with cobalamin biosynthesis (vitamin B12); cobalt transport protein CbiN complement(554886..555386) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283410 YP_003687438.1 CDS cbiM NC_014215.1 555379 556086 R cobalt transport protein CbiM complement(555379..556086) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283404 YP_003687439.1 CDS gntR NC_014215.1 556396 557160 R transcriptional regulator complement(556396..557160) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283403 YP_003687440.1 CDS gnuT NC_014215.1 557509 558852 D SignalP : Signal peptide probability: 0.976 Max cleavage site probability: 0.772 between pos. 39 and 40; gluconate permease 557509..558852 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283652 YP_003687441.1 CDS gnd1 NC_014215.1 559009 559869 D 6-phospho-D-gluconate + NADP+ <=> D-Ribulose 5-phosphate + CO2 + NADPH + H+; 6-phosphogluconate dehydrogenase 559009..559869 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283653 YP_003687442.1 CDS dnaK2 NC_014215.1 560277 562151 D Belongs to the heat shock protein 70 family. Acts as a chaperone. Several 70 to 75 kda Hsp70 chaperones are expressed as disctinct heat shock proteins; molecular chaperone DnaK 560277..562151 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283647 YP_003687443.1 CDS grpE2 NC_014215.1 562316 562966 D Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with dnaK; molecular chaperone DnaK 562316..562966 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283517 YP_003687444.1 CDS dnaJ2 NC_014215.1 563028 564200 D Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins; molecular chaperone DnaJ 563028..564200 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283665 YP_003687445.1 CDS hspr2 NC_014215.1 564293 564727 D Binds to three inverted repeats (IR1-IR3) in the promoter region of the dnaK operon; heat shock protein transcriptional repressor HspR2 564293..564727 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283514 YP_003687446.1 CDS PFREUD_04670 NC_014215.1 564886 565842 R ATP + N-acetyl-D-glucosamine <=> ADP + N-acetyl-D-glucosamine 6-phosphate; BadF/BadG/BcrA/BcrD ATPase family protein complement(564886..565842) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283728 YP_003687447.1 CDS purL NC_014215.1 566142 568406 D ATP + 5 prime-phosphoribosyl-N-formylglycinamide + L-glutamine + H2O <=> ADP + Orthophosphate + 2-(formamido)-N1-(5 prime-phosphoribosyl)acetamidine + L-glutamate; phosphoribosylformylglycinamidine synthase II 566142..568406 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282295 YP_003687448.1 CDS PFREUD_04690 NC_014215.1 568411 569757 D Zinc metallopeptidase 568411..569757 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284146 YP_003687449.1 CDS PFREUD_04700 NC_014215.1 569757 570233 D hypothetical protein 569757..570233 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282296 YP_003687450.1 CDS PFREUD_04710 NC_014215.1 570133 570339 D hypothetical protein 570133..570339 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282297 YP_003687451.1 CDS fhs NC_014215.1 570364 572040 D ATP + formate + tetrahydrofolate = ADP + phosphate + 10-formyltetrahydrofolate; formate--tetrahydrofolate ligase 570364..572040 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282298 YP_003687452.1 CDS PFREUD_04730 NC_014215.1 572142 572768 R Kinase complement(572142..572768) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283555 YP_003687453.1 CDS PFREUD_04740 NC_014215.1 572770 574119 R hypothetical protein complement(572770..574119) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282299 YP_003687454.1 CDS PFREUD_04750 NC_014215.1 574123 574392 R hypothetical protein complement(574123..574392) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282300 YP_003687455.1 CDS PFREUD_04760 NC_014215.1 574662 575501 D hypothetical protein 574662..575501 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282301 YP_003687456.1 CDS purF NC_014215.1 575602 577143 D 5-phosphoribosylamine + Pyrophosphate + L-glutamate <=> L-glutamine + 5-phospho-alpha-D-ribose 1-diphosphate + H2O; amidophosphoribosyltransferase 575602..577143 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282302 YP_003687457.1 CDS purM NC_014215.1 577140 578201 D phosphoribosylformylglycinamidine cyclo-ligase 577140..578201 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284143 YP_003687458.1 CDS PFREUD_04790 NC_014215.1 578289 578357 R hypothetical protein complement(578289..578357) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284148 YP_003687459.1 CDS PFREUD_04800 NC_014215.1 578435 578665 D hypothetical protein 578435..578665 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282303 YP_003687460.1 CDS pf962 NC_014215.1 578917 579999 D recombinant protein active on 1- naphthyl actetate and 1- naphthyl propionate; carboxylic ester hydrolase 578917..579999 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282304 YP_003687461.1 CDS PFREUD_04850 NC_014215.1 580722 582440 R cell-wall peptidases, NlpC/P60 family secreted protein complement(580722..582440) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282307 YP_003687462.1 CDS PFREUD_04860 NC_014215.1 582880 583686 R ABC transporter permease complement(582880..583686) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282308 YP_003687463.1 CDS PFREUD_04880 NC_014215.1 584354 584722 R ABC transporter complement(584354..584722) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283954 YP_003687464.1 CDS tetR4 NC_014215.1 584891 585658 D TetR family transcriptional regulator 584891..585658 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282310 YP_003687465.1 CDS PFREUD_24640 NC_014215.1 586152 587357 R transposase for IS3514b complement(586152..587357) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282311 YP_003687466.1 CDS arsR2 NC_014215.1 587567 587992 D ArsR family transcriptional regulator 587567..587992 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283279 YP_003687467.1 CDS PFREUD_04920 NC_014215.1 587989 589860 D SignalP : Signal anchor transmembrane according to TM HMM; ATPase P 587989..589860 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283349 YP_003687468.1 CDS aspB NC_014215.1 589997 591163 R L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate; aspartate/tyrosine/aromatic aminotransferase complement(589997..591163) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282312 YP_003687469.1 CDS ApbA NC_014215.1 591226 592191 R (R)-Pantoate + NADP+ <=> 2-Dehydropantoate + NADPH + H+; 2-dehydropantoate 2-reductase complement(591226..592191) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283362 YP_003687470.1 CDS KradDRAFT_4229 NC_014215.1 592188 593213 R zinc-containing alcohol dehydrogenase complement(592188..593213) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283314 YP_003687471.1 CDS PFREUD_04960 NC_014215.1 593531 593875 R hypothetical protein complement(593531..593875) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283802 YP_003687472.1 CDS tal1 NC_014215.1 594428 595510 R Sedoheptulose 7-phosphate + D-glyceraldehyde 3-phosphate = D-erythrose 4-phosphate + D-fructose 6-phosphate.; transaldolase complement(594428..595510) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282313 YP_003687473.1 CDS PFREUD_04980 NC_014215.1 595709 596308 R hypothetical protein complement(595709..596308) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284313 YP_003687474.1 CDS PFREUD_04990 NC_014215.1 596489 596836 R PRC-barrel protein complement(596489..596836) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282314 YP_003687475.1 CDS pf1420 NC_014215.1 596958 597719 R hypothetical protein complement(596958..597719) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282315 YP_003687476.1 CDS pf2416 NC_014215.1 597716 598528 R hypothetical protein complement(597716..598528) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284031 YP_003687477.1 CDS czcD NC_014215.1 598718 599686 D Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are thought to be efflux pumps that remove these ions from cells.; Co/Zn/Cd cation transporter CzcD 598718..599686 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284041 YP_003687478.1 CDS PFREUD_05030 NC_014215.1 599715 600179 D dCMP + H2O <=> dUMP + NH3 deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP; deoxycytidylate deaminase 599715..600179 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283471 YP_003687479.1 CDS PFREUD_05040 NC_014215.1 600205 600603 R PRC-barrel protein complement(600205..600603) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282316 YP_003687480.1 CDS PFREUD_05050 NC_014215.1 600766 601194 R membrane efflux protein MFS complement(600766..601194) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282317 YP_003687481.1 CDS PFREUD_05060 NC_014215.1 601228 602043 R membrane efflux protein MFS complement(601228..602043) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282318 YP_003687482.1 CDS PFREUD_05070 NC_014215.1 602377 602631 R hypothetical protein complement(602377..602631) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282319 YP_003687483.1 CDS menA NC_014215.1 602812 603693 D Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to dimethylmenaquinone (DMK). Attaches octaprenylpyrophosphate, a membrane-bound 40-carbon side subunit to DHNA. The conversion of DHNA to DMK proceeds in three stages: the removal of the carboxyl group of DHNA as CO(2), the attachment of the isoprenoid side subunit, and a quinol-to-quinone oxidation, which is thought to be spontaneous; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 602812..603693 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282320 YP_003687484.1 CDS PFREUD_05090 NC_014215.1 603710 605479 R nuclease RecB complement(603710..605479) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283863 YP_003687485.1 CDS ubiE NC_014215.1 605606 606301 R methyltransferase required for the conversion of dimethylmenaquinone (DMKH2) to menaquinone (MKH2) / S-adenosyl-L-methionine + demethylmenaquinol = s-adenosyl-L-homocysteine + menaquinol / Cofactor biosynthesis; menaquinone biosynthesis; menaquinone from chorismate: step 7/7.; menaquinone biosynthesis methyltransferase complement(605606..606301) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282321 YP_003687486.1 CDS PFREUD_05110 NC_014215.1 606498 607181 D ABC transporter ATP-binding protein 606498..607181 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284448 YP_003687487.1 CDS PFREUD_05120 NC_014215.1 607178 608983 D hypothetical protein 607178..608983 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282322 YP_003687488.1 CDS dhbC NC_014215.1 609029 610267 R Chorismate <=> Isochorismate; menaquinone-specific isochorismate synthase complement(609029..610267) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282323 YP_003687489.1 CDS PFREUD_05140 NC_014215.1 610613 611944 D electron transfer oxidoreductase 610613..611944 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283497 YP_003687491.1 CDS nuoA NC_014215.1 612001 612366 D Acceptor + NADH + H+ <=> Reduced acceptor + NAD+; NADH-quinone oxidoreductase 612001..612366 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282325 YP_003687492.1 CDS nuoB NC_014215.1 612385 612942 D # Ubiquinol + NAD+ <=> Ubiquinone + NADH + H+; NADH dehydrogenase I subunit B 612385..612942 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283963 YP_003687493.1 CDS nuoC NC_014215.1 612939 613706 D Acceptor + NADH + H+ <=> Reduced acceptor + NAD+; NADH dehydrogenase I subunit C 612939..613706 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283964 YP_003687494.1 CDS nuoD NC_014215.1 613703 615076 D Acceptor + NADH + H+ <=> Reduced acceptor + NAD+; NADH dehydrogenase I subunit D 613703..615076 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283965 YP_003687495.1 CDS nuoE NC_014215.1 615132 615863 D Acceptor + NADH + H+ <=> Reduced acceptor + NAD+; NADH-quinone oxidoreductase subunit E 615132..615863 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283966 YP_003687496.1 CDS nuoF NC_014215.1 615860 617200 D Acceptor + NADH + H+ <=> Reduced acceptor + NAD+; NADH dehydrogenase I subunit F 615860..617200 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283967 YP_003687497.1 CDS nuoG NC_014215.1 617197 619608 D Acceptor + NADH + H+ <=> Reduced acceptor + NAD+; NADH dehydrogenase I subunit G 617197..619608 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283968 YP_003687498.1 CDS nuoH NC_014215.1 619605 620975 D Acceptor + NADH + H+ <=> Reduced acceptor + NAD+; NADH dehydrogenase I subunit H 619605..620975 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283969 YP_003687499.1 CDS nuoI NC_014215.1 620976 621548 D Acceptor + NADH + H+ <=> Reduced acceptor + NAD+; NADH dehydrogenase I subunit I 620976..621548 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283970 YP_003687500.1 CDS nuoJ NC_014215.1 621545 622414 D Ubiquinol + NAD+ <=> Ubiquinone + NADH + H+ / Ubiquinol <=> Ubiquinone + 2 H+; NADH dehydrogenase I subunit J 621545..622414 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283971 YP_003687501.1 CDS nuoK NC_014215.1 622411 622710 D Acceptor + NADH + H+ <=> Reduced acceptor + NAD+; NADH dehydrogenase I subunit K 622411..622710 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283972 YP_003687502.1 CDS nuoL NC_014215.1 622721 624628 D Acceptor + NADH + H+ <=> Reduced acceptor + NAD+; NADH dehydrogenase (quinone) 622721..624628 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283973 YP_003687503.1 CDS nuoM NC_014215.1 624643 626184 D Ubiquinol + NAD+ <=> Ubiquinone + NADH + H+; NADH dehydrogenase I subunit M 624643..626184 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283974 YP_003687504.1 CDS nuoN NC_014215.1 626188 627744 D Ubiquinol + NAD+ <=> Ubiquinone + NADH + H+ / Ubiquinol <=> Ubiquinone + 2 H+; NADH dehydrogenase I subunit N 626188..627744 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283975 YP_003687505.1 CDS idsA NC_014215.1 627665 628735 D all-trans-Hexaprenyl diphosphate + Isopentenyl diphosphate <=> all-trans-Heptaprenyl diphosphate + Pyrophosphate; Heptaprenyl diphosphate synthase component II 627665..628735 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283976 YP_003687506.1 CDS PFREUD_05310 NC_014215.1 628865 629320 R hypothetical protein complement(628865..629320) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283736 YP_003687507.1 CDS PFREUD_05320 NC_014215.1 629393 630598 R hypothetical protein complement(629393..630598) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282326 YP_003687508.1 CDS PFREUD_05330 NC_014215.1 630686 632641 R In bacteria they may be used for digestion of milk. believed to be involved with milk protein cleavage.; peptidase M13 complement(630686..632641) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282327 YP_003687509.1 CDS PFREUD_05340 NC_014215.1 632789 633868 R thiamine pyrophosphate complement(632789..633868) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282328 YP_003687510.1 CDS PFREUD_05350 NC_014215.1 633865 635754 R pyruvate flavodoxin/ferredoxin oxidoreductase complement(633865..635754) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282329 YP_003687511.1 CDS PFREUD_05360 NC_014215.1 635926 637515 D hypothetical protein 635926..637515 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282330 YP_003687512.1 CDS PFREUD_05370 NC_014215.1 637682 638068 D hypothetical protein 637682..638068 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282331 YP_003687513.1 CDS xthA NC_014215.1 638127 639068 R Exonucleolytic cleavage in the 3 prime- to 5 prime -direction to yield nucleoside 5 prime-phosphates; exodeoxyribonuclease III/exonuclease III complement(638127..639068) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282332 YP_003687514.1 CDS PFREUD_05390 NC_014215.1 639168 639641 D hypothetical protein 639168..639641 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284481 YP_003687515.1 CDS ahpC NC_014215.1 640165 640728 D 2 RSH + ROOH <=> R-S-S-R + H2O + ROH; Peroxiredoxin/Alkyl hydroperoxide reductase subunit C 640165..640728 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282334 YP_003687516.1 CDS ahpF NC_014215.1 640907 642607 D alkyl hydroperoxide reductase 640907..642607 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283303 YP_003687517.1 CDS rpmG NC_014215.1 643006 643176 D 50S ribosomal protein L33 643006..643176 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282336 YP_003687518.1 CDS PFREUD_05460 NC_014215.1 643324 643758 D hypothetical protein 643324..643758 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284227 YP_003687519.1 CDS PFREUD_05470 NC_014215.1 643755 644186 D Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer; hypothetical protein 643755..644186 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282337 YP_003687520.1 CDS murB NC_014215.1 644256 645389 D UDP-N-acetylenolpyruvoylglucosamine reductase 644256..645389 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282338 YP_003687521.1 CDS PFREUD_05490 NC_014215.1 645411 646895 D hypothetical protein 645411..646895 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283917 YP_003687522.1 CDS secE NC_014215.1 647328 647915 D SecE/Sec61-gamma subunit of protein translocation complex 647328..647915 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282340 YP_003687523.1 CDS nusG NC_014215.1 647935 648822 D transcription antitermination protein NusG 647935..648822 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284272 YP_003687524.1 CDS rplK NC_014215.1 648932 649360 D 50S ribosomal protein L11 648932..649360 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283979 YP_003687525.1 CDS rplA NC_014215.1 649482 650192 D 50S ribosomal protein L1 649482..650192 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284207 YP_003687526.1 CDS lipB NC_014215.1 650368 651231 D Catalyzes the transfer of the endogenously synthesized lipoate to apoproteins, creating an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoate-dependent enzymes. Utilizes lipoyl-acyl-carrier-protein as a source of lipoyl groups.; lipoyltransferase 650368..651231 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284199 YP_003687527.1 CDS lipA NC_014215.1 651228 652178 D Octanoyl-ACP + 2 sulfurs = lipoyl-ACP. Catalyzes the radical-mediated insertion of two sulfur atoms into an octanoyl group bound to acyl-carrier-protein (ACP) to produce a lipoyl group; lipoic acid synthetase 651228..652178 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283828 YP_003687528.1 CDS tnpB NC_014215.1 652368 653255 R transposase complement(652368..653255) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283827 YP_003687529.1 CDS TnpD NC_014215.1 653288 653632 R transposase IS3/IS911 complement(653288..653632) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284397 YP_003687530.1 CDS rplJ NC_014215.1 653935 654582 D 50S ribosomal protein L10 653935..654582 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284408 YP_003687531.1 CDS rplL NC_014215.1 654599 654994 D 50S ribosomal protein L7/L12 654599..654994 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284206 YP_003687532.1 CDS PFREUD_05590 NC_014215.1 655241 655891 D hypothetical protein 655241..655891 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284208 YP_003687533.1 CDS rpoB NC_014215.1 656217 659693 D DNA-directed RNA polymerase subunit beta 656217..659693 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282341 YP_003687534.1 CDS rpoC NC_014215.1 659795 663685 D RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase; DNA-directed RNA polymerase subunit beta 659795..663685 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284230 YP_003687535.1 CDS rpsL NC_014215.1 664145 664516 D 30S ribosomal protein S12 664145..664516 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284231 YP_003687536.1 CDS rpsG NC_014215.1 664516 664986 D 30S ribosomal protein S7 664516..664986 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284245 YP_003687537.1 CDS fusA NC_014215.1 665157 667256 D elongation factor G 665157..667256 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284241 YP_003687538.1 CDS tuf NC_014215.1 667491 668681 D elongation factor Tu 667491..668681 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283588 YP_003687539.1 CDS PFREUD_05660 NC_014215.1 668875 670353 R hypothetical protein complement(668875..670353) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284443 YP_003687540.1 CDS PFREUD_05670 NC_014215.1 670434 671036 D hypothetical protein 670434..671036 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282342 YP_003687541.1 CDS gltX NC_014215.1 671193 672656 D glutamyl-tRNA synthetase 671193..672656 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282343 YP_003687542.1 CDS int NC_014215.1 672653 673648 R integrase core domain. integrase mediates integration of a DNA copy of the viral genome into the host chromosome.; integrase complement(672653..673648) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283639 YP_003687543.1 CDS pabC NC_014215.1 673798 674670 D branched-chain amino acid aminotransferase 673798..674670 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283770 YP_003687544.1 CDS rpsJ NC_014215.1 675105 675416 D 30S ribosomal protein S10 675105..675416 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283993 YP_003687545.1 CDS rplC NC_014215.1 675413 676087 D 50S ribosomal protein L3 675413..676087 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284243 YP_003687546.1 CDS rplD NC_014215.1 676084 676785 D 50S ribosomal protein L4 676084..676785 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284201 YP_003687547.1 CDS rplW NC_014215.1 676782 677093 D 50S ribosomal protein L23 676782..677093 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284202 YP_003687548.1 CDS rplB NC_014215.1 677132 677968 D 50S ribosomal protein L2 677132..677968 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284219 YP_003687549.1 CDS rpsS NC_014215.1 677986 678267 D 30S ribosomal protein S19 677986..678267 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284200 YP_003687550.1 CDS rplV NC_014215.1 678293 678778 D 50S ribosomal protein L22 678293..678778 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284252 YP_003687551.1 CDS rpsC NC_014215.1 678781 679599 D 30S ribosomal protein S3 678781..679599 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284218 YP_003687552.1 CDS rplP NC_014215.1 679605 680024 D highly similar to SwissProt entry RL16_PROAC from Propionibacterium acnes; 50S ribosomal protein L16 679605..680024 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284237 YP_003687553.1 CDS rpmC NC_014215.1 680026 680274 D 50S ribosomal protein L29 680026..680274 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284212 YP_003687554.1 CDS rpsQ NC_014215.1 680271 680546 D highly similar to Swissprot entry RS17_PROAC from Propionibacterium acnes; 30S ribosomal protein S17 680271..680546 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284224 YP_003687555.1 CDS rplN NC_014215.1 680677 681048 D 50S ribosomal protein L14 680677..681048 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284250 YP_003687556.1 CDS rplX NC_014215.1 681050 681421 D 50S ribosomal protein L24 681050..681421 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284210 YP_003687557.1 CDS rplE NC_014215.1 681421 682083 D 50S ribosomal protein L5 681421..682083 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284220 YP_003687558.1 CDS rpsN1 NC_014215.1 682092 682277 D 30S ribosomal protein S14 682092..682277 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284203 YP_003687559.1 CDS rpsH NC_014215.1 682437 682844 D 30S ribosomal protein S8 682437..682844 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284247 YP_003687560.1 CDS rplF NC_014215.1 682875 683417 D This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center, Part of the 50S ribosomal subunit, elongs to the ribosomal protein L6P family; 50S ribosomal protein L6 682875..683417 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284242 YP_003687561.1 CDS rplR NC_014215.1 683420 683803 D 50S ribosomal protein L18 683420..683803 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284204 YP_003687562.1 CDS rpsE NC_014215.1 683757 684437 D 30S ribosomal protein S5 683757..684437 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284214 YP_003687563.1 CDS rpmD NC_014215.1 684437 684619 D 50S ribosomal protein L30 684437..684619 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284239 YP_003687564.1 CDS rplO NC_014215.1 684621 685064 D 50S ribosomal protein L15 684621..685064 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284225 YP_003687565.1 CDS PFREUD_05910 NC_014215.1 685421 686068 R NAD(P)H-dependent FMN reductase complement(685421..686068) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284211 YP_003687566.1 CDS mer NC_014215.1 686179 687375 R 5,10-methylenetetrahydromethanopterin + Coenzyme F420 <=> 5,10-methenyltetrahydromethanopterin + Reduced coenzyme F420; coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase complement(686179..687375) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282344 YP_003687567.1 CDS bopA NC_014215.1 687626 689344 R ABC transporter substrate-binding protein complement(687626..689344) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283870 YP_003687568.1 CDS PFREUD_05940 NC_014215.1 689415 691514 R ABC transporter ATPase complement(689415..691514) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283383 YP_003687569.1 CDS oppC NC_014215.1 691511 692497 R ABC transporter permease complement(691511..692497) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282345 YP_003687570.1 CDS PFREUD_05960 NC_014215.1 692499 693629 R ABC transporter complement(692499..693629) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283983 YP_003687571.1 CDS secY NC_014215.1 693872 695185 D Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel. One of seven secretory proteins (secA-F and secY) that comprise the prokaryotic protein translocation apparatus. cell membrane; Multi-pass membrane protein.; preprotein translocase subunit SecY 693872..695185 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282346 YP_003687572.1 CDS adk NC_014215.1 695182 695757 D ATP + AMP = 2 ADP.; adenylate kinase 695182..695757 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284274 YP_003687573.1 CDS map NC_014215.1 695754 696599 D Removes the amino-terminal methionine from nascent proteins. Release of N-terminal amino acids, preferentially methionine, from peptides and arylamides. Binds 2 cobalt ions per subunit. Belongs to the peptidase M24A family; methionine aminopeptidase 695754..696599 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283301 YP_003687574.1 CDS PFREUD_06000 NC_014215.1 696625 697011 D hypothetical protein 696625..697011 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283855 YP_003687575.1 CDS PFREUD_06010 NC_014215.1 697042 697326 R hypothetical protein complement(697042..697326) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282347 YP_003687576.1 CDS infA NC_014215.1 697685 697906 D translation initiation factor IF-1 697685..697906 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282348 YP_003687577.1 CDS PFREUD_06030 NC_014215.1 697999 698112 D hypothetical protein 697999..698112 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283744 YP_003687578.1 CDS rpsM NC_014215.1 698365 698739 D highly similar to SwissProt entry RS13_BIFLO from Bifidobacterium longum; 30S ribosomal protein S13 698365..698739 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282349 YP_003687579.1 CDS rpsK NC_014215.1 698785 699192 D 30S ribosomal protein S11 698785..699192 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284246 YP_003687580.1 CDS rpsD NC_014215.1 699223 699828 D 30S ribosomal protein S4 699223..699828 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284244 YP_003687581.1 CDS rpoA NC_014215.1 699953 700972 D DNA-directed RNA polymerase subunit alpha 699953..700972 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284238 YP_003687582.1 CDS rplQ NC_014215.1 701016 701603 D 50S ribosomal protein L17 701016..701603 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284229 YP_003687583.1 CDS gtfE NC_014215.1 701740 702885 D transferase activity transferring glycosyl groups; glycosyltransferase 701740..702885 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284213 YP_003687584.1 CDS PFREUD_06100 NC_014215.1 702981 704066 R Resuscitation-promoting factor RpfB complement(702981..704066) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283671 YP_003687585.1 CDS sodA NC_014215.1 704360 704968 R superoxide dismutase complement(704360..704968) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282350 YP_003687586.1 CDS PFREUD_06120 NC_014215.1 705167 706207 D ABC transporter ATP-binding protein 705167..706207 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284289 YP_003687587.1 CDS PFREUD_06130 NC_014215.1 706177 707769 D ABC transporter 706177..707769 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282351 YP_003687588.1 CDS pf2694 NC_014215.1 707784 708635 R ABC transporter permease complement(707784..708635) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282352 YP_003687589.1 CDS cbiO2 NC_014215.1 708632 710248 R cobalt ABC transporter ATP-binding protein complement(708632..710248) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284043 YP_003687590.1 CDS PFREUD_06160 NC_014215.1 710245 711378 R ABC transporter permease complement(710245..711378) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283406 YP_003687591.1 CDS PFREUD_06170 NC_014215.1 711391 711942 R hypothetical protein complement(711391..711942) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282353 YP_003687593.1 CDS PFREUD_06190 NC_014215.1 712252 712881 R methyltransferase complement(712252..712881) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282355 YP_003687594.1 CDS truA NC_014215.1 712889 713767 R tRNA uridine <=> tRNA pseudouridine; tRNA pseudouridine synthase A complement(712889..713767) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282356 YP_003687595.1 CDS trmB NC_014215.1 713760 714614 R S-adenosyl-L-methionine + tRNA <=> S-adenosyl-L-homocysteine + tRNA containing N7-methylguanine; tRNA (guanine-N(7)-)-methyltransferase complement(713760..714614) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284433 YP_003687596.1 CDS PFREUD_06220 NC_014215.1 714824 715222 D hypothetical protein 714824..715222 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284423 YP_003687597.1 CDS PFREUD_06230 NC_014215.1 715354 717471 R GTP + H2O <=> GDP + Orthophosphate; GTP phosphohydrolase complement(715354..717471) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282357 YP_003687598.1 CDS rplM NC_014215.1 717751 718194 D 50S ribosomal protein L13 717751..718194 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282358 YP_003687599.1 CDS rspI NC_014215.1 718191 718742 D 30S ribosomal protein S9 718191..718742 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284209 YP_003687600.1 CDS glmM NC_014215.1 718866 720236 D alpha-D-glucosamine 1-phosphate <=> D-glucosamine 6-phosphate; phosphoglucosamine mutase 718866..720236 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284255 YP_003687601.1 CDS coaA NC_014215.1 720375 721457 R ATP + (R)-pantothenate = ADP + (R)-4-phosphopantothenate; pantothenate kinase complement(720375..721457) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283619 YP_003687602.1 CDS glmS NC_014215.1 721612 723456 D * L-glutamine + D-Fructose 6-phosphate <=> L-glutamate + D-glucosamine 6-phosphate . Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 721612..723456 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283429 YP_003687603.1 CDS acpS NC_014215.1 723497 723964 D CoA + Apo-ACP <=> adenosine 3prime,5prime-bisphosphate + acyl-carrier protein; phosphopantethiene--protein transferase 723497..723964 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283620 YP_003687604.1 CDS PFREUD_06300 NC_014215.1 723966 725384 D carbohydrate kinase 723966..725384 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283293 YP_003687605.1 CDS sqdX NC_014215.1 725413 726558 R glycosyl transferases group 1; glycosyltransferase complement(725413..726558) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282359 YP_003687606.1 CDS PFREUD_06320 NC_014215.1 726836 729967 D hypothetical protein 726836..729967 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284298 YP_003687607.1 CDS PFREUD_06330 NC_014215.1 730230 731225 D hypothetical protein 730230..731225 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282360 YP_003687608.1 CDS PFREUD_06340 NC_014215.1 731222 731908 D peptidase, family M22 731222..731908 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282361 YP_003687609.1 CDS rimI NC_014215.1 731905 732426 D acetyl-CoA + ribosomal-protein L-alanine <=> CoA + ribosomal-protein N-acetyl-L-alanine; ribosomal-protein-alanine acetyltransferase 731905..732426 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282362 YP_003687610.1 CDS gcp NC_014215.1 732423 733496 D Could be a metalloprotease.Hydrolysis of O-sialoglycoproteins; cleaves 31-Arg-|-Asp-32 bond in glycophorin A. Does not cleave unglycosylated proteins, desialylated glycoproteins or glycoproteins that are only N-glycosylated. Belongs to the peptidase M22 family.; O-sialoglycoprotein endopeptidase 732423..733496 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284179 YP_003687611.1 CDS bluB/cobT2 NC_014215.1 733570 735450 D phosphoribosyltransferase/nitroreductase 733570..735450 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283603 YP_003687612.1 CDS pepC NC_014215.1 735634 737082 D nactivates bleomycin B2 (a cytotoxic glycometallopeptide) by hydrolysis of a carboxyamide bond of beta-aminoalanine, but also shows general aminopeptidase activity. The specificity varies somewhat with source, but amino acid arylamides of Met, Leu and Ala are preferred. Belongs to the peptidase C1 family.; aminopeptidase 735634..737082 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283382 YP_003687613.1 CDS mutT NC_014215.1 737137 737622 D 8-dihydro-8-oxoguanine-triphosphatase 737137..737622 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284026 YP_003687614.1 CDS PFREUD_06400 NC_014215.1 737766 739061 D major facilitator super family protein 737766..739061 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283930 YP_003687615.1 CDS PFREUD_06410 NC_014215.1 739086 740456 D hypothetical protein 739086..740456 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282363 YP_003687616.1 CDS opuCB NC_014215.1 740668 741309 D ABC transporter permease 740668..741309 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282364 YP_003687617.1 CDS opuCA NC_014215.1 741306 742640 D glycine betaine/carnitine/choline transport ATP-binding protein opuCA 741306..742640 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283986 YP_003687618.1 CDS opuBB NC_014215.1 742637 743374 D permease membrane component ABC transporter OpuBB 742637..743374 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283985 YP_003687619.1 CDS PFREUD_06450 NC_014215.1 743378 744409 D ABC transporter permease 743378..744409 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283984 YP_003687620.1 CDS groS1 NC_014215.1 744646 744942 D heat shock protein 10 744646..744942 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282365 YP_003687621.1 CDS groL1 NC_014215.1 744964 746556 D Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. groL1 and groL2 are expressed as 2 distinct heat shock proteins; molecular chaperone GroEL 744964..746556 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283662 YP_003687622.1 CDS int NC_014215.1 746660 747700 R integrase complement(746660..747700) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283660 YP_003687623.1 CDS guaB1 NC_014215.1 747801 749321 D IMP + NAD+ + H2O <=> Xanthosine 5 prime-phosphate + NADH + H+; inosine-5'-monophosphate dehydrogenase 747801..749321 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283771 YP_003687624.1 CDS guaB2 NC_014215.1 749473 750576 D inosine-5'-monophosphate dehydrogenase 749473..750576 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283675 YP_003687625.1 CDS PFREUD_06500 NC_014215.1 750607 750936 D Chorismate mutase EC:5.4.99.5 catalyses the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine; chorismate mutase 750607..750936 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283676 YP_003687626.1 CDS PFREUD_06510 NC_014215.1 751240 752556 D transcription initiation factor 751240..752556 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282366 YP_003687627.1 CDS PFREUD_06520 NC_014215.1 752581 754284 D hypothetical protein 752581..754284 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282367 YP_003687628.1 CDS PFREUD_06530 NC_014215.1 754297 755367 D hypothetical protein 754297..755367 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282368 YP_003687629.1 CDS amiC NC_014215.1 755357 756274 D N-acetylmuramoyl-L-alanine amidase 755357..756274 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282369 YP_003687630.1 CDS cysE NC_014215.1 756309 756860 R L-serine + acetyl-CoA <=> O-acetyl-L-serine + CoA; serine acetyltransferase complement(756309..756860) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283311 YP_003687631.1 CDS cys1 NC_014215.1 756857 757783 R cysteine synthase complement(756857..757783) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283461 YP_003687632.1 CDS araD1 NC_014215.1 759751 760398 D L-ribulose 5-phosphate = D-xylulose 5-phosphate. L-arabinose catabolism; third step. Belongs to the aldolase class II family. AraD/fucA subfamily. The Bacillus subtilis L-arabinose (ara) operon: nucleotide sequence, genetic organization and expression. Microbiology 143,957-969(1997).; L-ribulose-5-phosphate 4-epimerase 759751..760398 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283319 YP_003687633.1 CDS PFREUD_06600 NC_014215.1 760358 760456 D hypothetical protein 760358..760456 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283325 YP_003687634.1 CDS araA NC_014215.1 760526 762046 D L-arabinose = L-ribulose. L-arabinose catabolism; first step. Belongs to the arabinose isomerase family. This reaction is the first step in the pathway of L-arabinose utilisation as a carbon source after entering the cell L-arabinose is converted into L-ribulose by the L-arabinose isomerases enzyme.; L-arabinose isomerase 760526..762046 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282370 YP_003687635.1 CDS lacI1 NC_014215.1 762073 763110 D arabinose operon repressor 762073..763110 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283317 YP_003687636.1 CDS biaA NC_014215.1 763354 764334 D locus abc transport; ABC transporter 763354..764334 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283808 YP_003687637.1 CDS PFREUD_06640 NC_014215.1 764472 766004 D Molecular function: ATP binding. Responsible for energy coupling to the transport system; ABC transporter 764472..766004 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283376 YP_003687638.1 CDS PFREUD_06660 NC_014215.1 766375 767058 D sugar ABC transporter permease 766375..767058 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284493 YP_003687639.1 CDS PFREUD_06670 NC_014215.1 767055 768083 D locus abc transport.; sugar ABC transporter 767055..768083 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282372 YP_003687640.1 CDS guaA NC_014215.1 768378 769931 D glutamine amidotransferase 768378..769931 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282373 YP_003687641.1 CDS PFREUD_06690 NC_014215.1 770136 771023 D hypothetical protein 770136..771023 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283674 YP_003687642.1 CDS PFREUD_06700 NC_014215.1 771074 772006 R Zn-dependent oxidoreductase complement(771074..772006) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282374 YP_003687643.1 CDS pspC NC_014215.1 772315 772650 R transcriptional regulator complement(772315..772650) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282375 YP_003687644.1 CDS PFREUD_06720 NC_014215.1 772847 774190 D two-component system sensor kinase 772847..774190 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284129 YP_003687645.1 CDS luxR NC_014215.1 774187 774885 D LuxR family transcriptional regulator 774187..774885 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282376 YP_003687646.1 CDS PFREUD_06740 NC_014215.1 775122 775373 R hypothetical protein complement(775122..775373) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283839 YP_003687647.1 CDS feuS NC_014215.1 775663 776679 D iron ABC transporter substrate-binding protein 775663..776679 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282377 YP_003687648.1 CDS PFREUD_06760 NC_014215.1 776751 777692 D iron ABC transporter permease 776751..777692 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283553 YP_003687649.1 CDS feuC NC_014215.1 777762 778802 D cobalamin/Fe3+-siderophore ABC transporter permease 777762..778802 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282378 YP_003687650.1 CDS PFREUD_06780 NC_014215.1 778817 779554 D highly similar to Q411B6_KINRA from Kineococcus radiotolerans SRS30216 and COG domain; ABC transporter 778817..779554 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283552 YP_003687651.1 CDS PFREUD_06790 NC_014215.1 779627 780880 R phospholipase D/transphosphatidylase complement(779627..780880) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282379 YP_003687652.1 CDS pcrA NC_014215.1 781017 783506 D ATP-dependent DNA helicase 781017..783506 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282380 YP_003687653.1 CDS PFREUD_06810 NC_014215.1 783600 785078 D hypothetical protein 783600..785078 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284004 YP_003687654.1 CDS purN NC_014215.1 785089 785700 D 10-formyltetrahydrofolate + 5prim-phosphoribosylglycinamide <=> Tetrahydrofolate + 5prim-phosphoribosyl-N-formylglycinamide and 5prim-phosphoribosylglycinamide + 5,10-methenyltetrahydrofolate + H2O <=> 5prim-phosphoribosyl-N-formylglycinamide + Tetrahydrofolate; 5-phosphoribosylglycinamide formyltransferase 785089..785700 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282381 YP_003687655.1 CDS purH NC_014215.1 785822 787375 D 10-formyltetrahydrofolate + 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide = tetrahydrofolate + 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4- carboxamide and IMP + H2O = 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4- carboxamide; phosphoribosylaminoimidazolecarboxamide formyltransferase 785822..787375 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284149 YP_003687656.1 CDS folD NC_014215.1 787449 788309 D 5,10-methylenetetrahydrofolate + NADP+ <=> 5,10-methenyltetrahydrofolate + NADPH + H+ / Tetrahydrofolate + formate + ATP <=> ADP + Orthophosphate + 10-formyltetrahydrofolate; methylenetetrahydrofolate dehydrogenase 787449..788309 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284144 YP_003687657.1 CDS PFREUD_06850 NC_014215.1 788315 788638 D hypothetical protein 788315..788638 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283569 YP_003687658.1 CDS mdh NC_014215.1 788820 789806 R (S)-malate + NAD+ = oxaloacetate + NADH.; malate dehydrogenase complement(788820..789806) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282382 YP_003687659.1 CDS icd NC_014215.1 789984 791201 D Isocitrate + NADP+ <=> Oxalosuccinate + NADPH + H+; isocitrate/isopropylmalate dehydrogenase 789984..791201 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283862 YP_003687660.1 CDS PFREUD_06880 NC_014215.1 791362 791673 R hypothetical protein complement(791362..791673) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283732 YP_003687661.1 CDS azlC NC_014215.1 791670 792338 R amino acid ABC transporter permease complement(791670..792338) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282383 YP_003687662.1 CDS PFREUD_06900 NC_014215.1 792632 794152 D hypothetical protein 792632..794152 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283373 YP_003687663.1 CDS PFREUD_06910 NC_014215.1 794233 795522 D no signal peptid, no TM domain; hypothetical protein 794233..795522 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282384 YP_003687664.1 CDS PFREUD_06920 NC_014215.1 795652 796716 D hypothetical protein 795652..796716 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282385 YP_003687665.1 CDS rnhA NC_014215.1 796788 797819 D Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; ribonuclease H 796788..797819 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282386 YP_003687666.1 CDS PFREUD_06940 NC_014215.1 797896 798411 D hypothetical protein 797896..798411 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284191 YP_003687667.1 CDS caiD NC_014215.1 798488 799420 R enoyl-CoA hydratase/carnithine racemase complement(798488..799420) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282387 YP_003687668.1 CDS metG NC_014215.1 799728 801407 D methionyl-tRNA synthetase 799728..801407 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283391 YP_003687669.1 CDS PFREUD_06970 NC_014215.1 801649 802572 D atalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.; Silent information regulator protein Sir2 NAD-dependent deacetylase 801649..802572 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283879 YP_003687670.1 CDS PFREUD_06980 NC_014215.1 802591 803235 R hypothetical protein complement(802591..803235) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282388 YP_003687671.1 CDS PFREUD_06990 NC_014215.1 803232 803687 R hypothetical protein complement(803232..803687) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282389 YP_003687672.1 CDS soxR NC_014215.1 803860 804225 R MerR family transcriptional regulator complement(803860..804225) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282390 YP_003687673.1 CDS pcaC1 NC_014215.1 804338 804745 D 2-carboxy-2,5-dihydro-5-oxofuran-2-acetate <=> 2-Oxo-2,3-dihydrofuran-5-acetate + CO2; 4-carboxymuconolactone decarboxylase 804338..804745 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284290 YP_003687674.1 CDS PFREUD_07020 NC_014215.1 804742 804912 D hypothetical protein 804742..804912 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284000 YP_003687675.1 CDS PFREUD_07030 NC_014215.1 806044 806664 R N-acetyltransferase GCN5 complement(806044..806664) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282391 YP_003687676.1 CDS PFREUD_07040 NC_014215.1 806985 807383 D hypothetical protein 806985..807383 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282392 YP_003687677.1 CDS PFREUD_07050 NC_014215.1 807515 808558 R zinc-binding dehydrogenase complement(807515..808558) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282393 YP_003687678.1 CDS PFREUD_07060 NC_014215.1 808696 810483 R hypothetical protein complement(808696..810483) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282394 YP_003687679.1 CDS nifJ2 NC_014215.1 810795 814514 D pyruvate:ferredoxin (Flavodoxin) oxidoreductase 810795..814514 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282395 YP_003687680.1 CDS PFREUD_07080 NC_014215.1 814518 815525 D (S)-dihydroorotate + Oxygen <=> Orotate + H2O2; dihydroorotate dehydrogenase 814518..815525 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283950 YP_003687681.1 CDS PFREUD_07090 NC_014215.1 815553 816095 R hypothetical protein complement(815553..816095) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282396 YP_003687682.1 CDS accA NC_014215.1 816148 817929 R ATP + acetyl-CoA + HCO(3)(-) <=> ADP + phosphate + malonyl-CoA; acetyl-CoA carboxylase complement(816148..817929) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282397 YP_003687683.1 CDS mutM2 NC_014215.1 818085 818900 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3- and 5-phosphates; formamidopyrimidine-DNA glycosylase complement(818085..818900) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283288 YP_003687684.1 CDS PFREUD_07120 NC_014215.1 819051 819164 R hypothetical protein complement(819051..819164) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283928 YP_003687685.1 CDS PFREUD_07130 NC_014215.1 819547 820026 D hypothetical protein 819547..820026 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282398 YP_003687686.1 CDS PFREUD_07140 NC_014215.1 820117 820617 R NUDIX hydrolase complement(820117..820617) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282399 YP_003687687.1 CDS maf NC_014215.1 820621 821349 R implicated in inhibition of septum; Maf-like protein complement(820621..821349) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282400 YP_003687688.1 CDS PFREUD_07160 NC_014215.1 821400 821654 R hypothetical protein complement(821400..821654) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283847 YP_003687689.1 CDS pccB NC_014215.1 821660 823234 R ATP + propanoyl-CoA + HCO(3)(-) <=> ADP + phosphate + (S)-methylmalonyl-CoA; propionyl-CoA carboxylase subunit beta complement(821660..823234) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282401 YP_003687690.1 CDS PFREUD_07180 NC_014215.1 823366 824712 D hypothetical protein 823366..824712 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284002 YP_003687691.1 CDS PFREUD_07200 NC_014215.1 825374 826456 R tetronasin ABC transporter complement(825374..826456) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282403 YP_003687692.1 CDS PFREUD_07210 NC_014215.1 826453 827397 R ABC transporter ATP-binding protein complement(826453..827397) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282404 YP_003687693.1 CDS PFREUD_07220 NC_014215.1 827502 828020 D hypothetical protein 827502..828020 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282405 YP_003687694.1 CDS PFREUD_07230 NC_014215.1 828135 828713 D transcriptional regulator 828135..828713 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282406 YP_003687695.1 CDS PFREUD_07240 NC_014215.1 828727 829320 R TetR family transcriptional regulator complement(828727..829320) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282407 YP_003687696.1 CDS birA NC_014215.1 829482 830273 D biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. ATP + biotin + Apo-[acetyl-CoA:carbon-dioxide ligase (ADP-forming)] <=> AMP + Pyrophosphate + [acetyl-CoA:carbon-dioxide ligase (ADP-forming)]; biotin-(acetyl-CoA carboxylase) ligase 829482..830273 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282408 YP_003687697.1 CDS PFREUD_07260 NC_014215.1 830307 830810 D hypothetical protein 830307..830810 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283378 YP_003687699.1 CDS PFREUD_07280 NC_014215.1 830892 831476 D TetR family transcriptional regulator 830892..831476 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282410 YP_003687700.1 CDS PFREUD_07290 NC_014215.1 831546 832262 R peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. type 1 glutamine amidotransferase; peptidase S51 complement(831546..832262) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282411 YP_003687701.1 CDS purK NC_014215.1 832331 833512 D phosphoribosylaminoimidazole carboxylase ATPase subunit 832331..833512 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282412 YP_003687702.1 CDS purE NC_014215.1 833505 834065 D 1-(5-phospho-D-ribosyl)-5-amino-4- imidazolecarboxylate <=> aminoimidazole ribotide + CO2; phosphoribosylaminoimidazole carboxylase catalytic subunit 833505..834065 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284145 YP_003687703.1 CDS PFREUD_07320 NC_014215.1 834103 835461 R transcriptional regulator complement(834103..835461) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284142 YP_003687704.1 CDS manC NC_014215.1 835587 836666 D mannose-1-phosphate guanylyltransferase 835587..836666 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282413 YP_003687705.1 CDS PFREUD_07340 NC_014215.1 836663 837745 D hypothetical protein 836663..837745 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283852 YP_003687706.1 CDS whiB1 NC_014215.1 838078 838338 D highly similar to A0LS21 from Acidothermus cellulolyticus (strain ATCC 43068 / 11B); transcription factor WhiB 838078..838338 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282414 YP_003687707.1 CDS PFREUD_07360 NC_014215.1 838535 841786 D glycosyltransferase 838535..841786 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284473 YP_003687708.1 CDS PFREUD_07370 NC_014215.1 841783 843135 D hypothetical protein 841783..843135 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282415 YP_003687709.1 CDS PFREUD_07380 NC_014215.1 843240 843680 R hypothetical protein complement(843240..843680) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282416 YP_003687710.1 CDS PFREUD_07390 NC_014215.1 843903 844247 D hypothetical protein 843903..844247 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282417 YP_003687711.1 CDS pmm NC_014215.1 844363 845178 D alpha-D-mannose 1-phosphate = D-mannose 6-phosphate; phosphomannomutase 844363..845178 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282418 YP_003687712.1 CDS PFREUD_07410 NC_014215.1 845239 845439 D hypothetical protein 845239..845439 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284084 YP_003687713.1 CDS PFREUD_07420 NC_014215.1 845447 846463 D hypothetical protein 845447..846463 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282419 YP_003687714.1 CDS PFREUD_07430 NC_014215.1 846536 847615 D Cation transport protein 846536..847615 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282420 YP_003687715.1 CDS PFREUD_07440 NC_014215.1 847771 848034 R hypothetical protein complement(847771..848034) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282421 YP_003687716.1 CDS PFREUD_07450 NC_014215.1 848165 849604 D transmembrane transport protein 848165..849604 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282422 YP_003687717.1 CDS PFREUD_07460 NC_014215.1 849778 850830 D pfam06271, RDD family. This family of proteins contain 3 highly conserved amino acids: one arginine and two aspartates. The arginine occurs at the N terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown but may be involved in transport of an as yet unknown set of ligands; hypothetical protein 849778..850830 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282423 YP_003687718.1 CDS malQ1 NC_014215.1 850960 853149 D transfers a segment of a (1->4)-alpha-D-glucan to a new position in an acceptor, which may be glucose or a (1->4)-alpha-D-glucan.; 4-alpha-glucanotransferase 850960..853149 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282424 YP_003687719.1 CDS menC NC_014215.1 853146 854144 D 1R,6R)-6-hydroxy-2-succinylcyclohexa-2, 4-diene-1-carboxylate = 2-succinylbenzoate + H2O.; O-succinylbenzoate-CoA synthase 853146..854144 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283848 YP_003687720.1 CDS menD NC_014215.1 854269 855924 D 2-Oxoglutarate + Isochorismate <=> 2-Succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate + pyruvate + CO2 . Bifunctional 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; menaquinone biosynthesis protein 854269..855924 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283865 YP_003687721.1 CDS uvrA1 NC_014215.1 856032 858602 D UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A). The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 856032..858602 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283866 YP_003687722.1 CDS PFREUD_07510 NC_014215.1 858773 859249 D hypothetical protein 858773..859249 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284463 YP_003687723.1 CDS menF NC_014215.1 859365 860633 R Chorismate <=> Isochorismate; isochorismate synthetase complement(859365..860633) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282425 YP_003687724.1 CDS menE2 NC_014215.1 860699 861931 R ATP + 2-Succinylbenzoate + CoA <=> AMP + Pyrophosphate + 2-Succinylbenzoyl-CoA - Cofactor biosynthesis; menaquinone biosynthesis; menaquinone from chorismate: step 4/7.; O-succinylbenzoic acid--CoA ligase complement(860699..861931) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283869 YP_003687725.1 CDS menB NC_014215.1 862004 863008 R 2-Succinylbenzoyl-CoA <=> 1,4-dihydroxy-2-naphthoate + CoA . Cofactor biosynthesis; menaquinone biosynthesis; menaquinone from chorismate: step 5/7; naphthoate synthase complement(862004..863008) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283868 YP_003687726.1 CDS pncB NC_014215.1 863171 864526 R Nicotinate D-ribonucleotide + Pyrophosphate <=> Nicotinate + 5-phospho-alpha-D-ribose 1-diphosphate; Nicotinate phosphoribosyltransferase complement(863171..864526) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283864 YP_003687727.1 CDS clpS NC_014215.1 864635 864946 D ATP-dependent Clp protease adaptor protein clpS 864635..864946 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284086 YP_003687728.1 CDS PFREUD_07570 NC_014215.1 864946 865551 D hypothetical protein 864946..865551 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283425 YP_003687729.1 CDS murI NC_014215.1 865639 866457 D L-glutamate <=> D-glutamate; glutamate racemase 865639..866457 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282426 YP_003687730.1 CDS rph NC_014215.1 866611 867372 D 3 prime exoribonuclease family, domain 1. This family includes 3 prime-5 prime exoribonucleases. ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA.; tRNA nucleotidyltransferase 866611..867372 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283923 YP_003687731.1 CDS PFREUD_07600 NC_014215.1 867369 868175 D HAM1, NTPase/HAM1 867369..868175 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284195 YP_003687732.1 CDS thyA NC_014215.1 868177 868989 D Provides the sole de novo source of dTMP for DNA biosynthesis - dUMP + 5,10-methylenetetrahydrofolate <=> dihydrofolate + dTMP; Thymidylate synthase 868177..868989 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282427 YP_003687733.1 CDS folA NC_014215.1 869077 869706 D 5,6,7,8-tetrahydrofolate + NADP+ = 7,8-dihydrofolate + NADPH. tetrahydrofolate biosynthesis; tetrahydrofolate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate: step 3/3.; dihydrofolate reductase 869077..869706 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284340 YP_003687734.1 CDS dinB NC_014215.1 869710 871161 D deoxynucleoside triphosphate + DNA <=> Pyrophosphate + DNA; DNA polymerase IV 869710..871161 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283566 YP_003687735.1 CDS argK NC_014215.1 871365 872378 R kinase complement(871365..872378) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283498 YP_003687736.1 CDS mutB NC_014215.1 872371 874557 R methylmalonyl-CoA mutase catalyzes the isomerization of succinyl-CoA to methylmalonyl-CoA during synthesis of propionate from tricarboxylic acid-cycle intermediates. Induced by heat and acid stresses.; methylmalonyl-CoA mutase subunit alpha complement(872371..874557) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283335 YP_003687737.1 CDS mutA NC_014215.1 874554 876470 R methylmalonyl-CoA mutase catalyzes the isomerization of succinyl-CoA to methylmalonyl-CoA during synthesis of propionate from tricarboxylic acid-cycle intermediates. Induced by heat and acid stresses.; methylmalonyl-CoA mutase subunit beta complement(874554..876470) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283926 YP_003687738.1 CDS PFREUD_07670 NC_014215.1 876727 876888 R hypothetical protein complement(876727..876888) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283925 YP_003687739.1 CDS cbiL NC_014215.1 877302 878075 D cobalt-precorrin 2 + S-adenosyl-L-methionine <=> cobalt-precorrin 3 + S-adenosyl-L-homocysteine; CbiL Precorrin-2 C20-methyltransferase 877302..878075 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282428 YP_003687740.1 CDS cbiF NC_014215.1 878105 879064 D # S-adenosyl-L-methionine + Precorrin 4 <=> S-adenosyl-L-homocysteine + Precorrin 5; CbiF Precorrin-4 C11-methyltransferase 878105..879064 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283402 YP_003687741.1 CDS cobJ/cbiE/cbiG/cbiH NC_014215.1 879061 881721 D S-adenosyl-L-methionine + Precorrin 3B <=> S-adenosyl-L-homocysteine + Precorrin 4 / cobalt-precorrin 3 + S-adenosyl-L-methionine <=> cobalt-precorrin 4 + S-adenosyl-L-homocysteine; precorrin methylase 879061..881721 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283400 YP_003687742.1 CDS cysG/cbiX NC_014215.1 881714 882955 D cobalt fixation on precorrin 2; CysG/CbiX 881714..882955 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283435 YP_003687743.1 CDS cbiD NC_014215.1 882987 884279 R cobalt-precorrin-6A synthase [deacetylating] CbiD complement(882987..884279) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283462 YP_003687744.1 CDS cbiC NC_014215.1 884276 884929 R * Precorrin 8X <=> Hydrogenobyrinate; Precorrin 8X methylmutase CbiC complement(884276..884929) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283399 YP_003687746.1 CDS cbiT NC_014215.1 885026 885616 R Precorrin 8 decarboxylase CbiT complement(885026..885616) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282429 YP_003687747.1 CDS CbiJ NC_014215.1 885689 886456 R # Precorrin 6Y + NADP+ <=> Precorrin 6X + NADPH + H+; precorrin-6x reductase complement(885689..886456) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283411 YP_003687748.1 CDS araD NC_014215.1 886437 887129 R L-Ribulose 5-phosphate <=> D-Xylulose 5-phosphate; L-ribulose-5-phosphate 4-epimerase AraD complement(886437..887129) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283401 YP_003687749.1 CDS bcp NC_014215.1 887422 887910 R thioredoxin reductase complement(887422..887910) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282430 YP_003687750.1 CDS PFREUD_07800 NC_014215.1 888084 888383 D hypothetical protein 888084..888383 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283375 YP_003687751.1 CDS groS2 NC_014215.1 888410 888859 D molecular chaperone GroES 888410..888859 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282431 YP_003687752.1 CDS cobB/cobQ NC_014215.1 889121 889894 R adenosyl cobyrinate a,c diamide + 4 L-glutamine + 4 ATP + 4 H2O <=> adenosyl cobyrinate hexaamide + 4 L-glutamate + 4 Orthophosphate + 4 ADP; glutamine amidotransferase complement(889121..889894) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282432 YP_003687753.1 CDS PFREUD_07840 NC_014215.1 889888 891201 R ATP + Long-subunit carboxylate + CoA <=> AMP + Pyrophosphate + acyl-CoA; UDP-N-acetylmuramyl tripeptide synthase complement(889888..891201) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283434 YP_003687754.1 CDS PFREUD_07850 NC_014215.1 891314 892159 R protein tyrosine phosphate + H2O <=> protein tyrosine + Orthophosphate; protein-tyrosine-phosphatase complement(891314..892159) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282433 YP_003687755.1 CDS uvrA2 NC_014215.1 892229 894562 R UvrA, Excinuclease ATPase subunit complement(892229..894562) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282434 YP_003687756.1 CDS PFREUD_07870 NC_014215.1 894637 895143 D metal dependent phosphohydrolase 894637..895143 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284464 YP_003687757.1 CDS orn NC_014215.1 895881 896552 R oligoribonuclease complement(895881..896552) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282436 YP_003687758.1 CDS PFREUD_07900 NC_014215.1 896573 897838 R hypothetical protein complement(896573..897838) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283987 YP_003687759.1 CDS PFREUD_07920 NC_014215.1 898078 899580 D hypothetical protein 898078..899580 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282438 YP_003687760.1 CDS PFREUD_07930 NC_014215.1 899650 901512 D ABC transporter 899650..901512 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282439 YP_003687761.1 CDS PPA1638 NC_014215.1 901509 903152 D ABC transporter 901509..903152 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282440 YP_003687762.1 CDS PFREUD_07950 NC_014215.1 903149 903811 D hypothetical protein 903149..903811 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284102 YP_003687763.1 CDS ssb2 NC_014215.1 904028 904528 D single-stranded DNA-binding protein 904028..904528 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282441 YP_003687764.1 CDS PFREUD_07970 NC_014215.1 904724 906412 D ABC transporter ATP-binding protein 904724..906412 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284302 YP_003687765.1 CDS dhaK NC_014215.1 906584 907579 D ATP + glycerone <=> ADP + glycerone phosphate; DhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit 906584..907579 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282442 YP_003687766.1 CDS dhaL NC_014215.1 907579 908208 D Complexation with ADP increases the thermal unfolding temperature from 40 to 65 degrees Celsius ADP-binding subunit of the dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone. DhaL-ADP receives a phosphoryl group from dhaM and transmits it to dihydroxyacetone. DhaL-ADP acts also as a coactivator by binding to the sensor domain of dhaR. DhaL-ATP is inactive.; PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL 907579..908208 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283494 YP_003687767.1 CDS pptE NC_014215.1 908221 909741 D phosphoenolpyruvate-protein phosphoryltransferase PptE 908221..909741 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283496 YP_003687768.1 CDS galT NC_014215.1 909728 911098 R UDP-glucose + alpha-D-Galactose 1-phosphate <=> D-glucose 1-phosphate + UDP-D-galactose; galactose-1-phosphate uridylyltransferase complement(909728..911098) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284112 YP_003687770.1 CDS dcp NC_014215.1 911155 913191 D Removes dipeptides from the C-termini of N-blocked tripeptides, tetrapeptides and larger peptides. Hydrolysis of unblocked, C-terminal dipeptides from oligopeptides, with broad specificity. Does not hydrolyze bonds in which P1 is Pro, or both P1 and P1 are Gly.; peptidyl-dipeptidase 911155..913191 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282443 YP_003687771.1 CDS PFREUD_08040 NC_014215.1 913312 916140 R oxidoreductase complement(913312..916140) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283482 YP_003687772.1 CDS marR1 NC_014215.1 916146 916604 R pfam01047, MarR, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system.; MarR family transcriptional regulator complement(916146..916604) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282444 YP_003687773.1 CDS PFREUD_08060 NC_014215.1 916781 918670 D ATP + Hexadecanoic acid + CoA <=> AMP + Palmitoyl-CoA + Pyrophosphate / ATP + Long-subunit carboxylate + CoA <=> AMP + Pyrophosphate + acyl-CoA; long-subunit fatty-acid CoA ligase 916781..918670 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283859 YP_003687774.1 CDS pf2652 NC_014215.1 918676 919557 D hypothetical protein 918676..919557 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282445 YP_003687775.1 CDS thiD2 NC_014215.1 919704 920525 R ATP + 4-amino-2-methyl-5-phosphomethylpyrimidine <=> ADP + 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase complement(919704..920525) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284042 YP_003687776.1 CDS gnd2 NC_014215.1 920655 922112 R 6-phospho-D-gluconate + NADP+ <=> D-Ribulose 5-phosphate + CO2 + NADPH + H+; 6-phosphogluconate dehydrogenase complement(920655..922112) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284330 YP_003687777.1 CDS pepN NC_014215.1 922325 924928 R aminopeptidase with broad substrate specificity. Preference for leucine, cleaves also next to Arg and lysine. Release of an N-terminal aa, Xaa-|-Yaa-. Xaa is preferably Ala. Xaa-Pro may be released. peptidase M1 family. Monomer. Binds 1 zinc ion per subunit, Cytoplasmic.; aminopeptidase complement(922325..924928) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283648 YP_003687778.1 CDS PFREUD_08110 NC_014215.1 925271 925885 D DSBA-like thioredoxin 925271..925885 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284029 YP_003687779.1 CDS PFREUD_08120 NC_014215.1 926109 926903 D hypothetical protein 926109..926903 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282446 YP_003687780.1 CDS ligA NC_014215.1 926980 929274 D NAD+ + DNA <=> AMP + Nicotinamide D-ribonucleotide + DNA; DNA ligase 926980..929274 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282447 YP_003687781.1 CDS tetR5 NC_014215.1 929342 929908 R TetR family transcriptional regulator complement(929342..929908) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283826 YP_003687782.1 CDS PFREUD_08150 NC_014215.1 930002 930859 D hypothetical protein 930002..930859 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284324 YP_003687783.1 CDS PFREUD_08160 NC_014215.1 931909 933480 R hypothetical protein complement(931909..933480) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284348 YP_003687784.1 CDS PFREUD_08170 NC_014215.1 933656 933904 D hypothetical protein 933656..933904 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282449 YP_003687785.1 CDS sugE NC_014215.1 934004 934330 D Belongs to the small multidrug resistance (SMR) protein family; Small multidrug resistance protein 934004..934330 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282450 YP_003687786.1 CDS tig NC_014215.1 935066 936649 D Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation; Trigger factor (TF) 935066..936649 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282452 YP_003687787.1 CDS PFREUD_08220 NC_014215.1 936874 938067 D hypothetical protein 936874..938067 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284341 YP_003687788.1 CDS PFREUD_08230 NC_014215.1 938258 939532 D hypothetical protein 938258..939532 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282453 YP_003687789.1 CDS clpP1 NC_014215.1 939619 940254 D ATP-dependent Clp protease proteolytic subunit 1 939619..940254 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282454 YP_003687790.1 CDS clpP2 NC_014215.1 940278 940967 D ATP-dependent Clp protease proteolytic subunit 2 940278..940967 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283423 YP_003687791.1 CDS clpX NC_014215.1 941089 942366 D ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of clpP; ATP-dependent Clp protease ATP-binding subunit ClpX 941089..942366 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283424 YP_003687792.1 CDS PFREUD_08270 NC_014215.1 942478 942792 R hypothetical protein complement(942478..942792) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283426 YP_003687793.1 CDS thrC NC_014215.1 942911 944353 D O-phospho-L-homoserine + H2O <=> L-Threonine + Orthophosphate / O-phospho-4-hydroxy-L-threonine + H2O <=> 4-Hydroxy-L-threonine + Orthophosphate; threonine synthase 942911..944353 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282455 YP_003687794.1 CDS pfkA NC_014215.1 944432 945553 D ATP + D-Fructose 6-phosphate <=> ADP + D-Fructose 1,6-bisphosphate; 6-phosphofructokinase 944432..945553 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284338 YP_003687795.1 CDS PFREUD_08300 NC_014215.1 945638 946387 D haloacid dehalogenase 945638..946387 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284054 YP_003687796.1 CDS valS NC_014215.1 946495 949113 R valyl-tRNA synthetase complement(946495..949113) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282456 YP_003687797.1 CDS PFREUD_08320 NC_014215.1 949212 950006 R hypothetical protein complement(949212..950006) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284470 YP_003687798.1 CDS dsbG NC_014215.1 950270 951064 R protein-disulfide isomerase; DSBA oxidoreductase complement(950270..951064) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282457 YP_003687799.1 CDS PFREUD_08340 NC_014215.1 951100 951678 R hypothetical protein complement(951100..951678) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283524 YP_003687800.1 CDS folC NC_014215.1 951826 953331 D ATP + Tetrahydrofolate + L-glutamate <=> ADP + Orthophosphate + Tetrahydrofolyl-[Glu](2); folylpolyglutamate synthase 951826..953331 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282458 YP_003687801.1 CDS ndk NC_014215.1 953442 953918 D nucleoside-diphosphate kinase 953442..953918 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283568 YP_003687802.1 CDS PFREUD_08370 NC_014215.1 953915 955255 D hypothetical protein 953915..955255 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283945 YP_003687803.1 CDS PFREUD_08380 NC_014215.1 955332 957275 D Fe-S oxidoreductase 955332..957275 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282459 YP_003687804.1 CDS chaA NC_014215.1 957339 958439 R ionic transporter integral membrane protein complement(957339..958439) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282460 YP_003687805.1 CDS PFREUD_08400 NC_014215.1 958436 959692 R No signal peptide (signalP), membrane protein (TM HMM); hypothetical protein complement(958436..959692) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283414 YP_003687806.1 CDS PFREUD_08410 NC_014215.1 959907 960362 D MarR family transcriptional regulator 959907..960362 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282461 YP_003687807.1 CDS PFREUD_08420 NC_014215.1 960426 961178 D hypothetical protein 960426..961178 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282462 YP_003687809.1 CDS PFREUD_08440 NC_014215.1 961432 964218 D ribonuclease, Rne/Rng family 961432..964218 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282464 YP_003687810.1 CDS rplU NC_014215.1 964454 964762 D 50S ribosomal protein L21 964454..964762 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282465 YP_003687811.1 CDS rpmA NC_014215.1 964776 965039 D 50S ribosomal protein L27 964776..965039 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284217 YP_003687813.1 CDS obg NC_014215.1 965188 966789 D GTPase 965188..966789 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282466 YP_003687814.1 CDS proB NC_014215.1 966779 967951 D ATP + L-glutamate <=> ADP + L-glutamyl 5-phosphate; glutamate 5-kinase 966779..967951 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283980 YP_003687815.1 CDS PFREUD_08500 NC_014215.1 967984 968610 D hypothetical protein 967984..968610 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284119 YP_003687816.1 CDS proA NC_014215.1 968663 969904 D Catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate.; gamma-glutamyl phosphate reductase 968663..969904 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282467 YP_003687818.1 CDS nadD NC_014215.1 969978 970748 D # ATP + Nicotinamide D-ribonucleotide <=> Pyrophosphate + NAD+; nicotinate-nucleotide adenylyltransferase 969978..970748 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282468 YP_003687819.1 CDS PFREUD_08540 NC_014215.1 970745 971128 D hypothetical protein 970745..971128 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283938 YP_003687820.1 CDS gmpB NC_014215.1 971128 971736 D 2-phospho-D-glycerate <=> 3-phospho-D-glycerate and 3-phospho-D-glyceroyl phosphate <=> 2,3-Bisphospho-D-glycerate; phosphoglycerate mutase 971128..971736 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282469 YP_003687821.1 CDS PFREUD_08560 NC_014215.1 971796 972233 D hypothetical protein 971796..972233 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283646 YP_003687822.1 CDS PFREUD_08570 NC_014215.1 972348 973268 D NAD-dependent epimerase/dehydratase 972348..973268 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282470 YP_003687823.1 CDS PFREUD_08590 NC_014215.1 973571 974311 R hypothetical protein complement(973571..974311) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282472 YP_003687824.1 CDS PFREUD_08600 NC_014215.1 974529 975539 D hypothetical protein 974529..975539 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282473 YP_003687825.1 CDS leuS NC_014215.1 975856 978384 D leucyl-tRNA synthetase 975856..978384 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282474 YP_003687826.1 CDS pyrC NC_014215.1 978441 979733 D (S)-dihydroorotate + H2O <=> N-carbamoyl-L-aspartate; dihydroorotase 978441..979733 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283823 YP_003687827.1 CDS PPA0888 NC_014215.1 979751 981505 D The protein has been identified by proteomics as a 70 kDa / PI 5.9 protein induced by various stresses including starvation; malate dehydrogenase 979751..981505 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284153 YP_003687828.1 CDS PFREUD_08640 NC_014215.1 981624 982601 D hypothetical protein 981624..982601 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284096 YP_003687829.1 CDS comEC NC_014215.1 982720 985041 D ComE operon protein 3 982720..985041 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282475 YP_003687830.1 CDS holA NC_014215.1 985097 986122 D DNA polymerase III subunit delta 985097..986122 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283442 YP_003687831.1 CDS PFREUD_08670 NC_014215.1 986136 986798 R hypothetical protein complement(986136..986798) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283711 YP_003687832.1 CDS rpsT NC_014215.1 986932 987192 R Binds directly to 16S ribosomal RNA; 30S ribosomal protein S20 complement(986932..987192) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282476 YP_003687833.1 CDS PFREUD_08690 NC_014215.1 987447 988067 D hypothetical protein 987447..988067 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284253 YP_003687834.1 CDS PFREUD_08700 NC_014215.1 988006 988134 D hypothetical protein 988006..988134 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282477 YP_003687835.1 CDS lepA NC_014215.1 988368 990197 D GTP-binding protein LepA 988368..990197 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282478 YP_003687836.1 CDS hemM NC_014215.1 990200 991399 D Coproporphyrinogen III + Oxygen <=> Protoporphyrinogen IX + 2 CO2 + 2 H2O; Coproporphyrinogen oxidase / Oxygen-independent coproporphyrinogen III oxidase 990200..991399 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283816 YP_003687837.1 CDS PFREUD_08730 NC_014215.1 991494 992375 D hypothetical protein 991494..992375 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283693 YP_003687838.1 CDS PFREUD_08740 NC_014215.1 992447 993229 D inositol-phosphate phosphatase 992447..993229 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282479 YP_003687839.1 CDS hrcA NC_014215.1 993487 994497 D Heat-inducible transcription repressor hrcA 993487..994497 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282480 YP_003687840.1 CDS dnaJ3 NC_014215.1 994510 995718 D 3 pralogs of dnaj exist in P.freudenreichii, comprised in the 3 operons dnaK1, dnaK2 and hrcA.; molecular chaperone DnaJ 994510..995718 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283713 YP_003687841.1 CDS PFREUD_08770 NC_014215.1 995715 996464 D hypothetical protein 995715..996464 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283515 YP_003687842.1 CDS PFREUD_08780 NC_014215.1 996453 997760 R metallophosphoesterase complement(996453..997760) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282481 YP_003687843.1 CDS PFREUD_08790 NC_014215.1 997901 999169 D queuine tRNA-ribosyltransferase 997901..999169 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282482 YP_003687844.1 CDS PFREUD_08800 NC_014215.1 999282 999833 D hypothetical protein 999282..999833 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282483 YP_003687845.1 CDS pip2 NC_014215.1 999915 1000973 D Specifically catalyzes the removal of N-terminal proline residues from peptides, Release of N-terminal proline from a peptide, Belongs to the peptidase S33 family, cytoplasmic; proline iminopeptidase 999915..1000973 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282484 YP_003687846.1 CDS PFREUD_08820 NC_014215.1 1001029 1001520 D hypothetical protein 1001029..1001520 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284076 YP_003687847.1 CDS PFREUD_08830 NC_014215.1 1001614 1003071 D transporter, MFS superfamily protein 1001614..1003071 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282485 YP_003687848.1 CDS phoH NC_014215.1 1003203 1004210 D phosphate starvation-inducible protein PhoH-like protein 1003203..1004210 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282486 YP_003687849.1 CDS PFREUD_08850 NC_014215.1 1004257 1004715 D hypothetical protein 1004257..1004715 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284070 YP_003687850.1 CDS PFREUD_08860 NC_014215.1 1004869 1006173 D hypothetical protein 1004869..1006173 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282487 YP_003687851.1 CDS era NC_014215.1 1006160 1007110 D Binds both GDP and GTP, has an intrinsic GTPase activity and is essential for cell growth; GTP-binding protein 1006160..1007110 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282488 YP_003687852.1 CDS PFREUD_08880 NC_014215.1 1007160 1007627 D hypothetical protein 1007160..1007627 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283537 YP_003687853.1 CDS PFREUD_08890 NC_014215.1 1007624 1007767 D hypothetical protein 1007624..1007767 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282489 YP_003687854.1 CDS PFREUD_08900 NC_014215.1 1007878 1008012 D hypothetical protein 1007878..1008012 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282490 YP_003687855.1 CDS PFREUD_08910 NC_014215.1 1008141 1009637 R metal-dependent hydrolase complement(1008141..1009637) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282491 YP_003687856.1 CDS leuA1 NC_014215.1 1009878 1011644 D Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate). acetyl-CoA + 3-methyl-2-oxobutanoate + H2O = (2S)-2-isopropylmalate + CoA. (2S)-2-Isopropylmalate + CoA <=> acetyl-CoA + 3-methyl-2-oxobutanoic acid + H2O; 2-isopropylmalate synthase 1009878..1011644 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282492 YP_003687857.1 CDS PFREUD_08930 NC_014215.1 1011759 1012121 R hypothetical protein complement(1011759..1012121) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283818 YP_003687858.1 CDS uppS2 NC_014215.1 1012182 1012982 R Generates UDP pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide. trans,trans,cis-Geranylgeranyl diphosphate + 7 Isopentenyl diphosphate <=> di-trans,poly-cis-UDP diphosphate + 7 Pyrophosphate; UDP diphosphate synthase complement(1012182..1012982) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282493 YP_003687859.1 CDS recO NC_014215.1 1013055 1013798 D Involved in DNA repair and recF pathway recombination; DNA repair protein RecO 1013055..1013798 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284460 YP_003687860.1 CDS pocR NC_014215.1 1013962 1015155 D Positive regulatory protein of pdu and cob operons.; transcriptional regulator 1013962..1015155 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284168 YP_003687861.1 CDS adh1 NC_014215.1 1015339 1016469 D Fe-dependent alcohol dehydrogenase 1015339..1016469 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284090 YP_003687862.1 CDS pduV NC_014215.1 1016522 1016947 R glycerol metabolism; propanediol utilization protein PduV complement(1016522..1016947) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283300 YP_003687863.1 CDS pdU NC_014215.1 1016944 1017285 R cobalamin-dependent degradation of ethanolamine; propanediol utilization protein PduU complement(1016944..1017285) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284020 YP_003687864.1 CDS pduA NC_014215.1 1017612 1017896 D glycerol metabolism; propanediol utilization protein PduA 1017612..1017896 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284007 YP_003687865.1 CDS pduB NC_014215.1 1017911 1018720 D glycerol degradation; propanediol utilization protein PduB 1017911..1018720 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284009 YP_003687866.1 CDS pduC NC_014215.1 1018735 1020396 D glycerol dehydratase large subunit 1018735..1020396 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284010 YP_003687867.1 CDS pduD NC_014215.1 1020401 1021090 D propanediol utilization protein PduD 1020401..1021090 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284011 YP_003687868.1 CDS pduE NC_014215.1 1021099 1021632 D glycerol degradation; propanediol utilization protein PduE 1021099..1021632 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284012 YP_003687869.1 CDS pduG NC_014215.1 1021668 1023482 D glycerol degradation; propanediol utilization diol dehydratase reactivation protein PduG 1021668..1023482 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284013 YP_003687870.1 CDS DhaG NC_014215.1 1023479 1023823 D glycerol metabolism; glycerol dehydratase reactivation factor DhaG 1023479..1023823 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284014 YP_003687871.1 CDS pduK NC_014215.1 1023840 1024457 D propanediol utilization protein PduK 1023840..1024457 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283493 YP_003687872.1 CDS pduJ NC_014215.1 1024502 1024780 D propanediol utilization protein PduJ 1024502..1024780 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284016 YP_003687873.1 CDS eutJ NC_014215.1 1024927 1025784 D Ethanolamine utilization protein EutJ 1024927..1025784 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284015 YP_003687874.1 CDS pdu NC_014215.1 1025781 1026665 D Ethanolamine utilization flavoprotein 1025781..1026665 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283538 YP_003687875.1 CDS pduN NC_014215.1 1026667 1026939 D glycerol metabolism; propanediol utilization protein PduN 1026667..1026939 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284008 YP_003687876.1 CDS pduO NC_014215.1 1026942 1028027 D glycerol metabolism; propanediol utilization protein PduO 1026942..1028027 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284017 YP_003687877.1 CDS pduP NC_014215.1 1028024 1029433 D glycerol metabolism; CoA-dependent propionaldehyde dehydrogenase PduP 1028024..1029433 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284018 YP_003687878.1 CDS int NC_014215.1 1029647 1030321 R phage integrase complement(1029647..1030321) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284019 YP_003687879.1 CDS fur NC_014215.1 1030574 1031086 R pfam01475, Ferric uptake regulator family. This family includes metal ion uptake regulator proteins, that bind to the operator DNA and controls transcription of metal ion-responsive genes.; Ferric-uptake regulator complement(1030574..1031086) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283752 YP_003687880.1 CDS PFREUD_09160 NC_014215.1 1031052 1032059 R metal transport system ABC transporter permease complement(1031052..1032059) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283587 YP_003687881.1 CDS mntB NC_014215.1 1032061 1032849 R Manganese/zinc transport system ABC transporter ATP-binding protein complement(1032061..1032849) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282494 YP_003687882.1 CDS PFREUD_09180 NC_014215.1 1032944 1033891 R metal ABC transporter substrate-binding protein complement(1032944..1033891) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283893 YP_003687883.1 CDS glyQS NC_014215.1 1034124 1035512 D glycyl-tRNA synthetase 1034124..1035512 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282495 YP_003687884.1 CDS nadC NC_014215.1 1035637 1036557 R Nicotinate D-ribonucleotide + Pyrophosphate + CO2 <=> Pyridine-2,3-dicarboxylate + 5-phospho-alpha-D-ribose 1-diphosphate; nicotinate-nucleotide pyrophosphorylase complement(1035637..1036557) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283644 YP_003687885.1 CDS nadB1 NC_014215.1 1036554 1038236 R Catalyzes the oxidation of L-aspartate to iminoaspartate. L-aspartate + H2O + O2 = oxaloacetate + NH3 + H2O2.; L-aspartate oxidase complement(1036554..1038236) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283937 YP_003687886.1 CDS nadA NC_014215.1 1038233 1039213 R Cofactor biosynthesis; NAD(+) biosynthesis; pyridine-2,3-dicarboxylate from iminoaspartate: step 1/1.; Quinolinate synthetase A complement(1038233..1039213) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283935 YP_003687887.1 CDS PFREUD_09230 NC_014215.1 1039280 1040032 D NUDIX hydrolase 1039280..1040032 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283934 YP_003687888.1 CDS sdhC1 NC_014215.1 1040280 1041035 D succinate + FAD <=> FADH2 + Fumarate and succinate + Acceptor <=> Fumarate + Reduced acceptor; succinate dehydrogenase subunit C 1040280..1041035 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282496 YP_003687889.1 CDS sdhA NC_014215.1 1041032 1043116 D # succinate + FAD <=> FADH2 + Fumarate , A flavoprotein (FAD) containing iron-sulfur centres. A component of EC 1.3.5.1 succinate dehydrogenase (ubiquinone); nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein 1041032..1043116 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284269 YP_003687890.1 CDS sdhB NC_014215.1 1043113 1043871 D # succinate + FAD <=> FADH2 + Fumarate; succinate dehydrogenase subunit B 1043113..1043871 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284265 YP_003687891.1 CDS dus NC_014215.1 1043972 1045135 D Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.; TIM-barrel enzyme, dihydrouridine synthase 1043972..1045135 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284267 YP_003687892.1 CDS dgt NC_014215.1 1045186 1046331 D dGTP + H2O <=> deoxyguanosine + Triphosphate; deoxyguanosinetriphosphate triphosphohydrolase 1045186..1046331 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283528 YP_003687893.1 CDS PFREUD_09290 NC_014215.1 1046348 1047106 R Signal peptide; ABC transporter permease complement(1046348..1047106) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283491 YP_003687894.1 CDS PFREUD_09300 NC_014215.1 1047114 1047755 R hypothetical protein complement(1047114..1047755) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282497 YP_003687895.1 CDS lpdB NC_014215.1 1048164 1049594 D In the pyruvate dehydrogenase complex, it binds to the core of EC 2.3.1.12, and catalyses oxidation of its dihydrolipoyl groups. It plays a similar role in the oxoglutarate and 3-methyl-2-oxobutanoate dehydrogenase complexes pyruvate + CoA + NAD+ <=> acetyl-CoA + CO2 + NADH; dihydrolipoamide dehydrogenase 1048164..1049594 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282498 YP_003687896.1 CDS cof NC_014215.1 1049615 1050457 R Predicted hydrolases of the HAD superfamily; cof family hydrolase complement(1049615..1050457) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283834 YP_003687897.1 CDS PFREUD_09330 NC_014215.1 1050465 1051391 R hypothetical protein complement(1050465..1051391) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283440 YP_003687898.1 CDS moxR NC_014215.1 1051636 1052688 D ATPases MoxR family 1051636..1052688 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282499 YP_003687899.1 CDS PFREUD_09350 NC_014215.1 1052685 1053749 D hypothetical protein 1052685..1053749 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283904 YP_003687900.1 CDS chlD NC_014215.1 1053749 1054723 D ChlD, Mg-chelatase subunit ChlD 1053749..1054723 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282500 YP_003687901.1 CDS PFREUD_09370 NC_014215.1 1054723 1055688 D von Willebrand factor A 1054723..1055688 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283415 YP_003687902.1 CDS PFREUD_09380 NC_014215.1 1055685 1056437 D alanine racemase 1055685..1056437 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282501 YP_003687903.1 CDS pf435 NC_014215.1 1056486 1058465 R peptidase S9C complement(1056486..1058465) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282502 YP_003687904.1 CDS PFREUD_09400 NC_014215.1 1058616 1059110 D hypothetical protein 1058616..1059110 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284048 YP_003687905.1 CDS fabF NC_014215.1 1059294 1060553 R acetyl-CoA + acyl-carrier protein <=> CoA + acetyl-ACP; 3-oxoacyl-ACP synthase complement(1059294..1060553) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282503 YP_003687906.1 CDS acpP NC_014215.1 1060605 1060856 R 4 prime-phosphopantetheine is transferred from CoA to a specific serine of apo-ACP by acpS.; acyl carrier protein complement(1060605..1060856) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283539 YP_003687907.1 CDS fabH NC_014215.1 1060918 1061820 R acetyl-CoA + malonyl-ACP = acetoacyl-ACP + CoA + CO2; 3-oxoacyl-ACP synthase complement(1060918..1061820) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283292 YP_003687908.1 CDS pf3004 NC_014215.1 1061926 1062882 R recombinant protein active on 1- naphthyl actetate and 1- naphthyl propionate; carboxylic ester hydrolase complement(1061926..1062882) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283541 YP_003687909.1 CDS PFREUD_09450 NC_014215.1 1063072 1064253 R hypothetical protein complement(1063072..1064253) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284045 YP_003687910.1 CDS tyrB NC_014215.1 1064339 1065535 R L-aspartate + 2-Oxoglutarate <=> Oxaloacetate + L-glutamate; aspartate transaminase complement(1064339..1065535) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282504 YP_003687911.1 CDS aceE NC_014215.1 1065790 1068537 D pyruvate + Enzyme N6-(lipoyl)lysine <=> [dihydrolipoyllysine-residue acetyltransferase]S-acetyldihydrolipoyllysine + CO2 , The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3); 2-oxo-acid dehydrogenase subunit E1 1065790..1068537 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284446 YP_003687912.1 CDS PFREUD_09480 NC_014215.1 1068639 1069064 D hypothetical protein 1068639..1069064 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283289 YP_003687913.1 CDS PFREUD_09490 NC_014215.1 1069099 1070892 R ABC transporter ATP-binding protein complement(1069099..1070892) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282505 YP_003687914.1 CDS hsp20 NC_014215.1 1071142 1071594 D Belongs to the small heat shock protein (HSP20) family.These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterized by the presence of a conserved C-terminal domain of about 100 residues.; molecular chaperone Hsp20 1071142..1071594 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282506 YP_003687915.1 CDS PFREUD_09510 NC_014215.1 1071867 1073258 D amino acid ABC transporter permease 1071867..1073258 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283725 YP_003687916.1 CDS PFREUD_09520 NC_014215.1 1073255 1074115 D carbon-nitrogen hydrolase 1073255..1074115 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282507 YP_003687918.1 CDS gabT NC_014215.1 1074294 1075631 R 4-aminobutanoate + 2-oxoglutarate = succinate semialdehyde +; 4-aminobutyrate aminotransferase complement(1074294..1075631) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282509 YP_003687919.1 CDS fnk NC_014215.1 1075935 1076741 D FN3K catalyzes phosphorylation of fructosamines formed by glycation, the nonenzymatic reaction of glucose with primary amines followed by Amadori rearrangement. phosphorylation of fructosamines may initiate metabolism of the modified amine and result in deglycation of glycated proteins (Delpierre et al., 2000).; fructosamine kinase 1075935..1076741 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283590 YP_003687920.1 CDS PFREUD_09570 NC_014215.1 1076930 1077391 R It does however suggest that Yqey and its relatives have a role in tRNA metabolism.; hypothetical protein complement(1076930..1077391) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282510 YP_003687921.1 CDS prfB NC_014215.1 1077486 1078595 D voir aussi #2872 (RF-1); peptide chain release factor 2 1077486..1078595 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282511 YP_003687922.1 CDS ftsE NC_014215.1 1078747 1079433 D ABC transporter ATP-binding protein 1078747..1079433 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284116 YP_003687923.1 CDS ftsX NC_014215.1 1079472 1080389 D cell division protein 1079472..1080389 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283577 YP_003687924.1 CDS PFREUD_09610 NC_014215.1 1080393 1081775 D hypothetical protein 1080393..1081775 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283583 YP_003687925.1 CDS PFREUD_09620 NC_014215.1 1081959 1083911 D hypothetical protein 1081959..1083911 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282512 YP_003687926.1 CDS smpB NC_014215.1 1084062 1084544 D SmpB SsrA-binding protein 1084062..1084544 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282513 YP_003687927.1 CDS PFREUD_09640 NC_014215.1 1084628 1085275 D hypothetical protein 1084628..1085275 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284287 YP_003687928.1 CDS PFREUD_09650 NC_014215.1 1085981 1086547 D hypothetical protein 1085981..1086547 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282514 YP_003687929.1 CDS PFREUD_09660 NC_014215.1 1086683 1087423 D two-component system response regulator 1086683..1087423 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282515 YP_003687930.1 CDS prt NC_014215.1 1087505 1088314 D Members of phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage. Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes.; phosphoribosyltransferase 1087505..1088314 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282516 YP_003687931.1 CDS PFREUD_09680 NC_014215.1 1088470 1089066 D ribosomal S30AE, sigma 54 modulation protein 1088470..1089066 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284127 YP_003687932.1 CDS PFREUD_09690 NC_014215.1 1089311 1092160 D SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. SecA possesses the ATPase activity.; preprotein translocase subunit SecA 1089311..1092160 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282517 YP_003687933.1 CDS PFREUD_09700 NC_014215.1 1092200 1092583 R hypothetical protein complement(1092200..1092583) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282518 YP_003687934.1 CDS PFREUD_09710 NC_014215.1 1092823 1093332 D hypothetical protein 1092823..1093332 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282519 YP_003687935.1 CDS PFREUD_09720 NC_014215.1 1093334 1093537 D hypothetical protein 1093334..1093537 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282520 YP_003687936.1 CDS PFREUD_09730 NC_014215.1 1093596 1094072 R hypothetical protein complement(1093596..1094072) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282521 YP_003687937.1 CDS PPA1328 NC_014215.1 1094204 1095085 D metal-dependent phosphoesterase 1094204..1095085 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282522 YP_003687938.1 CDS trpS NC_014215.1 1095096 1096226 D ATP + L-tryptophan + tRNA(Trp) <=> AMP + Pyrophosphate + L-tryptophanyl-tRNA(Trp); tryptophanyl-tRNA synthetase 1095096..1096226 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284099 YP_003687939.1 CDS PFREUD_09760 NC_014215.1 1096364 1097869 R DEAD/DEAH box helicase complement(1096364..1097869) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284432 YP_003687940.1 CDS PFREUD_09770 NC_014215.1 1098145 1098900 D hypothetical protein 1098145..1098900 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282523 YP_003687941.1 CDS PFREUD_09780 NC_014215.1 1099087 1099311 R hypothetical protein complement(1099087..1099311) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282524 YP_003687942.1 CDS PFREUD_09790 NC_014215.1 1099428 1100300 R PP2Cc, serine/threonine phosphatases complement(1099428..1100300) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282525 YP_003687943.1 CDS cspA NC_014215.1 1100466 1100672 R Cold shock-like protein CspA complement(1100466..1100672) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282526 YP_003687944.1 CDS PFREUD_09810 NC_014215.1 1101012 1104383 D REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA.; ATP-dependent DNA helicase 1101012..1104383 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283448 YP_003687945.1 CDS urvD NC_014215.1 1104380 1107736 D UvrD/REP helicase 1104380..1107736 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282527 YP_003687946.1 CDS PFREUD_09830 NC_014215.1 1107746 1108636 D NUDIX protein 1107746..1108636 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284461 YP_003687947.1 CDS recD NC_014215.1 1108688 1110541 R exodeoxyribonuclease V subunit alpha complement(1108688..1110541) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282528 YP_003687948.1 CDS recB NC_014215.1 1110528 1113890 R exodeoxyribonuclease V subunit beta complement(1110528..1113890) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284164 YP_003687949.1 CDS recC NC_014215.1 1113887 1117231 R Exonuc_V_gamma, exodeoxyribonuclease V, gamma subunit. The exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage.; exodeoxyribonuclease V subunit gamma complement(1113887..1117231) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284162 YP_003687950.1 CDS PFREUD_09870 NC_014215.1 1117318 1117386 D hypothetical protein 1117318..1117386 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284163 YP_003687951.1 CDS uvrD NC_014215.1 1117364 1119520 D DNA helicase 1117364..1119520 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282529 YP_003687952.1 CDS PFREUD_09890 NC_014215.1 1119577 1120602 R hypothetical protein complement(1119577..1120602) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284469 YP_003687953.1 CDS PFREUD_09900 NC_014215.1 1120861 1121022 R hypothetical protein complement(1120861..1121022) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282530 YP_003687954.1 CDS PFREUD_09910 NC_014215.1 1121459 1122106 D metal dependent hydrolase 1121459..1122106 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282531 YP_003687955.1 CDS PFREUD_09920 NC_014215.1 1122138 1123580 R hypothetical protein complement(1122138..1123580) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282532 YP_003687957.1 CDS PFREUD_09940 NC_014215.1 1123782 1124825 D Secreted protease with a PDZ domain 1123782..1124825 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282534 YP_003687958.1 CDS PFREUD_09950 NC_014215.1 1124944 1125543 D hypothetical protein 1124944..1125543 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282535 YP_003687959.1 CDS PFREUD_09960 NC_014215.1 1125540 1128479 D hypothetical protein 1125540..1128479 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282536 YP_003687960.1 CDS PFREUD_09970 NC_014215.1 1128563 1129927 R Zn dependent peptidase complement(1128563..1129927) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282537 YP_003687961.1 CDS PFREUD_09980 NC_014215.1 1129927 1131198 R Zn-dependent peptidase complement(1129927..1131198) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282538 YP_003687962.1 CDS pip1 NC_014215.1 1131313 1132557 D peptide + H2O <=> L-proline + peptide; proline iminopeptidase 1131313..1132557 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282539 YP_003687963.1 CDS PFREUD_10000 NC_014215.1 1132724 1133014 D acetyltransferase 1132724..1133014 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284075 YP_003687964.1 CDS bioB NC_014215.1 1133177 1134322 D Dethiobiotin + Sulfur + 2 S-adenosyl-L-methionine <=> biotin + 2 L-methionine + 2 5prim-deoxyadenosine; biotin synthase 1133177..1134322 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282540 YP_003687965.1 CDS PFREUD_10030 NC_014215.1 1134690 1136213 D ABC transporter substrate-binding protein 1134690..1136213 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282541 YP_003687966.1 CDS PFREUD_10040 NC_014215.1 1136235 1137188 D ABC transporter permease 1136235..1137188 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282542 YP_003687967.1 CDS PFREUD_10050 NC_014215.1 1137185 1138000 D peptide ABC transporter permease 1137185..1138000 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282543 YP_003687968.1 CDS PFREUD_10060 NC_014215.1 1138002 1138859 D ABC transporter ATP-binding protein 1138002..1138859 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282544 YP_003687969.1 CDS PFREUD_10070 NC_014215.1 1138852 1139679 D ABC transporter ATP-binding protein 1138852..1139679 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282545 YP_003687970.1 CDS PFREUD_10080 NC_014215.1 1139740 1140933 D erythronate-4-phosphate + NAD+ = 2-oxo-3-hydroxy-4-phosphobutanoate + NADH and 3-phosphoglycerate + NAD+ = 3-phospho-hydroxypyruvate + NADH; D-3-phosphoglycerate dehydrogenase 1139740..1140933 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282546 YP_003687972.1 CDS PFREUD_10120 NC_014215.1 1142091 1143038 R Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase; exopolysaccharide biosynthesis protein complement(1142091..1143038) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282550 YP_003687973.1 CDS PFREUD_10130 NC_014215.1 1143195 1143830 D hypothetical protein 1143195..1143830 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282551 YP_003687974.1 CDS PFREUD_10140 NC_014215.1 1143827 1144639 D hypothetical protein 1143827..1144639 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282552 YP_003687975.1 CDS PFREUD_10150 NC_014215.1 1144636 1146369 D hypothetical protein 1144636..1146369 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282553 YP_003687976.1 CDS PFREUD_10160 NC_014215.1 1146423 1147238 R monophosphatase complement(1146423..1147238) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282554 YP_003687977.1 CDS engC NC_014215.1 1147292 1148362 R The engC protein is an unusual, circularly permuted GTPase that catalyzes rapid hydrolysis of GTP with comparatively slow catalytic turnover.; GTPase complement(1147292..1148362) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282555 YP_003687978.1 CDS aroA NC_014215.1 1148359 1149711 R phosphoenolpyruvate + Shikimate 3-phosphate <=> Orthophosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate; 3-phosphoshikimate 1-carboxyvinyltransferase complement(1148359..1149711) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283534 YP_003687979.1 CDS PFREUD_10190 NC_014215.1 1149859 1150611 D hypothetical protein 1149859..1150611 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283338 YP_003687980.1 CDS rpoE NC_014215.1 1150686 1151339 D RNA polymerase sigma-70 factor, sigma-E factor 1150686..1151339 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282556 YP_003687981.1 CDS PFREUD_10210 NC_014215.1 1151341 1151643 D anti-sigma factor 1151341..1151643 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284233 YP_003687982.1 CDS PFREUD_10220 NC_014215.1 1151811 1151885 R hypothetical protein complement(1151811..1151885) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282557 YP_003687983.1 CDS PFREUD_10230 NC_014215.1 1152129 1153637 D Sensory transduction histidine kinase 1152129..1153637 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282558 YP_003687984.1 CDS whiB2 NC_014215.1 1153742 1153990 R transcription factor WhiB complement(1153742..1153990) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282559 YP_003687985.1 CDS odhA NC_014215.1 1154235 1158020 R Annotated from high similarity with Swiss-Prot entry Q8NRC3, a bifunctional enzyme of Corynebacterium glutamicum with E1 and E2 activity. The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2); 2-oxoglutarate dehydrogenase, E1 and E2 components complement(1154235..1158020) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284474 YP_003687986.1 CDS PFREUD_10260 NC_014215.1 1158090 1159496 R hypothetical protein complement(1158090..1159496) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283981 YP_003687987.1 CDS PFREUD_10270 NC_014215.1 1159489 1160784 R hypothetical protein complement(1159489..1160784) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282560 YP_003687988.1 CDS PFREUD_10280 NC_014215.1 1160925 1162322 R hypothetical protein complement(1160925..1162322) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282561 YP_003687989.1 CDS PFREUD_10290 NC_014215.1 1162566 1163768 D hypothetical protein 1162566..1163768 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282562 YP_003687990.1 CDS lysA NC_014215.1 1163371 1165002 D lysine metabolism meso-2,6-diaminoheptanedioate <=> L-lysine + CO2; diaminopimelate decarboxylase 1163371..1165002 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282563 YP_003687991.1 CDS thrA/hom NC_014215.1 1165013 1166338 D L-Homoserine + NAD+ <=> L-aspartate 4-semialdehyde + NADH + H+ and L-Homoserine + NADP+ <=> L-aspartate 4-semialdehyde + NADPH + H+; Homoserine dehydrogenase 1165013..1166338 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282564 YP_003687992.1 CDS serB/thrH NC_014215.1 1166347 1166970 D O-phospho-L-serine + H2O <=> L-serine + Orthophosphate and D-O-phosphoserine + H2O <=> D-serine + Orthophosphate; bifunctional phosphoserine phosphatase/homoserine phosphotransferase 1166347..1166970 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284337 YP_003687993.1 CDS PFREUD_10340 NC_014215.1 1167364 1169334 D transcription termination factor Rho 1167364..1169334 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284277 YP_003687994.1 CDS rpmE NC_014215.1 1169471 1169695 D 50S ribosomal protein L31 1169471..1169695 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282565 YP_003687995.1 CDS prfA NC_014215.1 1169803 1170882 D voir aussi #2872; peptide chain release factor 1 1169803..1170882 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284226 YP_003687996.1 CDS hemK NC_014215.1 1170879 1171757 D methylase 1170879..1171757 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284115 YP_003687997.1 CDS PFREUD_10380 NC_014215.1 1171754 1172632 D Sua5_yciO_yrdC, yrdC domain. This domain has been shown to preferentially bind to dsRNA. The domain is found in SUA5 as well as HypF and YrdC; Sua5/YciO/YrdC/YwlC 1171754..1172632 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283690 YP_003687998.1 CDS tagO NC_014215.1 1172641 1173777 D Catalyzes the formation of UDP-PP-N-acetylglucosamine. Involved in the synthesis of anionic cell-wall polymers as it mediates the initiation of the linkage unit formation that appears to be common to the two types of teichoic acids attached to the peptidoglycan of B.subtilis. UDP-N-acetyl-D-glucosamine + UDP phosphate = UMP + N-acetyl-alpha-D-glucosaminyldiphospho-undecaprenol; UDP-phosphate alpha-N-acetylglucosaminyltransferase 1172641..1173777 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282566 YP_003688000.1 CDS PFREUD_10410 NC_014215.1 1173855 1174292 D hypothetical protein 1173855..1174292 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282567 YP_003688001.1 CDS PFREUD_10420 NC_014215.1 1174289 1174513 D hypothetical protein 1174289..1174513 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282568 YP_003688002.1 CDS atpB NC_014215.1 1174506 1175387 D Key component of the proton channel; it may play a direct role in the translocation of protons across the membrane [H]. ATP + H(2)O + H(+)(In) = ADP + phosphate + H(+)(Out); ATP synthase F1F0 subunit A 1174506..1175387 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282569 YP_003688003.1 CDS atpE NC_014215.1 1175433 1175651 D This is one of the three subunits of the nonenzymatic component (CF(0) subunit) of the ATPase complex [H]; ATP synthase F1F0 subunit C 1175433..1175651 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283366 YP_003688004.1 CDS atpF NC_014215.1 1175662 1176216 D ATP synthase F0F1 subunit B 1175662..1176216 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283369 YP_003688005.1 CDS atpH NC_014215.1 1176213 1176992 D This protein seems to be part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) into CF(1) or is implicated in proton conduction [H]. ATP + H2O + H+(In) = ADP + phosphate + H+(Out); ATP synthase subunit delta 1176213..1176992 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283370 YP_003688006.1 CDS atpA NC_014215.1 1176998 1178704 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha subunit is a regulatory subunit; ATP synthase subunit alpha 1176998..1178704 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283372 YP_003688007.1 CDS atpG NC_014215.1 1178707 1179642 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma subunit is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.; ATP synthase subunit gamma 1178707..1179642 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283365 YP_003688008.1 CDS atpD NC_014215.1 1179643 1181094 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; ATP synthase subunit beta 1179643..1181094 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283371 YP_003688009.1 CDS atpC NC_014215.1 1181094 1181561 D Produces ATP from ADP in the presence of a proton gradient across the membrane.; ATP synthase subunit epsilon 1181094..1181561 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283368 YP_003688010.1 CDS PFREUD_10510 NC_014215.1 1181603 1182061 D hypothetical protein 1181603..1182061 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283367 YP_003688011.1 CDS lplA NC_014215.1 1182085 1183149 D lipoate-protein ligase A 1182085..1183149 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282570 YP_003688012.1 CDS PFREUD_10530 NC_014215.1 1183324 1183932 R This family contains the gene products of PduO and EutT which are both cobalamin adenosyltransferases. PduO is a protein with ATP:cob(I)alamin adenosyltransferase activity. The main role of this protein is the conversion of inactive cobalamins to AdoCbl for 1,2-propanediol degradation.The EutT enzyme appears to be an adenosyl transferase converting CNB12 to AdoB12.; cobalamin adenosyltransferase complement(1183324..1183932) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283835 YP_003688013.1 CDS pf1509 NC_014215.1 1184011 1184841 R carboxylic ester hydrolase complement(1184011..1184841) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282571 YP_003688014.1 CDS PFREUD_10550 NC_014215.1 1184838 1185116 R hypothetical protein complement(1184838..1185116) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284032 YP_003688015.1 CDS PFREUD_10560 NC_014215.1 1185210 1185920 D nuclease of the RecB family 1185210..1185920 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282572 YP_003688016.1 CDS PFREUD_10570 NC_014215.1 1185961 1187754 R hypothetical protein complement(1185961..1187754) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282573 YP_003688017.1 CDS plsC2 NC_014215.1 1187913 1188488 R PlsC, phosphate acyltransferases complement(1187913..1188488) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282574 YP_003688018.1 CDS PFREUD_10590 NC_014215.1 1188644 1189090 R (R)-2-methyl-3-oxopropanoyl-CoA <=> (S)-2-methyl-3-oxopropanoyl-CoA; methylmalonyl-CoA epimerase complement(1188644..1189090) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284082 YP_003688019.1 CDS trxA3 NC_014215.1 1189322 1190314 R thioredoxin complement(1189322..1190314) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282575 YP_003688020.1 CDS pgm1 NC_014215.1 1190447 1192078 D D-glucose 1-phosphate <=> alpha-D-glucose 6-phosphate; phosphoglucomutase 1190447..1192078 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284437 YP_003688021.1 CDS PFREUD_10620 NC_014215.1 1192193 1192978 R NUDIX hydrolase complement(1192193..1192978) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284062 YP_003688022.1 CDS glgB NC_014215.1 1193014 1194918 R 1,4-alpha-D-glucan <=> glycogen; 1,4-alpha-glucan-branching protein complement(1193014..1194918) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282576 YP_003688023.1 CDS PPA1112 NC_014215.1 1194911 1196248 R trehalose biosynthesis protein complement(1194911..1196248) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283613 YP_003688024.1 CDS treS NC_014215.1 1196264 1198063 R Catalyzes the conversion of maltose into alpha,alpha-trehalose by transglucosylation. Annotated from blastp from sequence of (Cardoso et al, 2007 PubMed 17185556); trehalose synthase complement(1196264..1198063) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284098 YP_003688025.1 CDS glgE NC_014215.1 1198149 1200263 R glycosyl hydrolase family protein complement(1198149..1200263) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284420 YP_003688026.1 CDS glgP NC_014215.1 1200410 1202980 D (1,4-alpha-D-glucosyl)(n) + phosphate = (1,4-alpha-D-glucosyl)(n-1) + alpha-D-glucose 1-phosphate.; alpha-glucan phosphorylase 1200410..1202980 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283615 YP_003688027.1 CDS PFREUD_10680 NC_014215.1 1203143 1204036 R hypothetical protein complement(1203143..1204036) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283616 YP_003688028.1 CDS PFREUD_10690 NC_014215.1 1203997 1204569 R hypothetical protein complement(1203997..1204569) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282577 YP_003688029.1 CDS glgX/treX NC_014215.1 1204802 1207093 R glycogen debranching protein complement(1204802..1207093) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282578 YP_003688030.1 CDS trmU NC_014215.1 1207251 1208324 D S-adenosyl-L-methionine + tRNA <=> S-adenosyl-L-homocysteine + tRNA containing 5-methylaminomethyl-2-thiouridylate; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1207251..1208324 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283618 YP_003688031.1 CDS metE NC_014215.1 1208370 1209356 D 5-methyltetrahydropteroyltri-L-glutamate + L-Homocysteine <=> Tetrahydropteroyltri-L-glutamate + L-methionine; methionine synthase, vitamin-B12 independent 1208370..1209356 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284425 YP_003688032.1 CDS PFREUD_10730 NC_014215.1 1209425 1209628 D hypothetical protein 1209425..1209628 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283877 YP_003688033.1 CDS PFREUD_10740 NC_014215.1 1209648 1210274 R his family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme.; amino acid-binding protein complement(1209648..1210274) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282579 YP_003688034.1 CDS gatC NC_014215.1 1210495 1210797 D ATP + L-glutamyl-tRNA(Gln) + L-glutamine = ADP + phosphate + L-glutaminyl-tRNA(Gln) + L-glutamate.ATP + L-aspartyl-tRNA(Asn) + L-glutamine = ADP + phosphate + L-asparaginyl-tRNA(Asn) + L-glutamate.; glutamyl-tRNA(Gln) amidotransferase subunit C 1210495..1210797 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282580 YP_003688035.1 CDS gatA NC_014215.1 1210805 1212337 D Furnishes a means for formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln); glutamyl-tRNA(Gln) amidotransferase subunit A 1210805..1212337 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283602 YP_003688036.1 CDS gatB NC_014215.1 1212334 1213845 D ATP + L-glutamyl-tRNA(Gln) + L-glutamine = ADP + phosphate + L-glutaminyl-tRNA(Gln) + L-glutamate. ATP + L-aspartyl-tRNA(Asn) + L-glutamine = ADP + phosphate + L-asparaginyl-tRNA(Asn) + L-glutamate.; aspartyl/glutamyl-tRNA amidotransferase subunit B 1212334..1213845 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283600 YP_003688037.1 CDS PFREUD_10780 NC_014215.1 1214346 1216475 D hypothetical protein 1214346..1216475 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283601 YP_003688038.1 CDS pepE NC_014215.1 1217819 1218952 R Belongs to the peptidase M24B family, cell membrane; multi-pass membrane protein potential, potentially binds 2 manganese ions per subunit; dipeptidase pepE complement(1217819..1218952) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284037 YP_003688039.1 CDS PFREUD_10820 NC_014215.1 1219425 1219847 D PTS system, mannose/fructose/sorbose family, IIA component subfamily 1219425..1219847 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284028 YP_003688040.1 CDS PFREUD_10830 NC_014215.1 1219879 1220529 R contains C-terminal CBS domain; transcriptional regulator complement(1219879..1220529) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282582 YP_003688041.1 CDS livF NC_014215.1 1220531 1221235 R highly similar to Swiss-Prot entry P0A192; branched-chain amino acid ABC transporter ATP-binding protein complement(1220531..1221235) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282583 YP_003688042.1 CDS livG NC_014215.1 1221228 1222019 R highly similar with Swiss-Prot entries P0A194 and P0A958, COG; branched-chain amino acid ABC transporter ATP-binding protein complement(1221228..1222019) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283829 YP_003688043.1 CDS braE NC_014215.1 1222016 1223029 R 31% identity with Swiss-Prot entry P30296 and P22729. Part of the binding-protein-dependent transport system for branched-subunit amino acids. Probably responsible for the translocation of the substrates across the membrane.; branched-chain amino acid ABC transporter permease complement(1222016..1223029) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283830 YP_003688044.1 CDS braD NC_014215.1 1223032 1223916 R Annotated from similarity Swiss-Prot entry P21627. Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I).; branched-chain amino acid ABC transporter permease complement(1223032..1223916) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283386 YP_003688045.1 CDS braC NC_014215.1 1224013 1225176 R amino acid-binding protein complement(1224013..1225176) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283385 YP_003688046.1 CDS lpd NC_014215.1 1225372 1226772 R In the pyruvate dehydrogenase complex, it binds to the core of EC 2.3.1.12, and catalyses oxidation of its dihydrolipoyl groups. It plays a similar role in the oxoglutarate and 3-methyl-2-oxobutanoate dehydrogenase complexes. Another substrate is the dihydrolipoyl group in the H-protein of the glycine-cleavage system, in which it acts with EC 1.4.4.2 and EC 2.1.2.10 to break down glycine.; dihydrolipoamide dehydrogenase complement(1225372..1226772) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283384 YP_003688047.1 CDS MurA NC_014215.1 1226919 1228454 D cell wall formation. Adds enolpyruvyl to UDP-N-acetylglucosamine. phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine.; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1226919..1228454 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283833 YP_003688048.1 CDS pdxY NC_014215.1 1228545 1229414 R # ATP + Pyridoxal <=> ADP + Pyridoxal phosphate; Pyridoxal kinase complement(1228545..1229414) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283916 YP_003688049.1 CDS PFREUD_10920 NC_014215.1 1229561 1230076 D hypothetical protein 1229561..1230076 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284024 YP_003688050.1 CDS glpQ NC_014215.1 1230124 1230918 D glycerophosphodiester + H2O <=> Alcohol + sn-glycerol 3-phosphate; glycerophosphoryl diester phosphodiesterase 1230124..1230918 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282584 YP_003688051.1 CDS PFREUD_10940 NC_014215.1 1231025 1231363 D hypothetical protein 1231025..1231363 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283633 YP_003688052.1 CDS dpm NC_014215.1 1231459 1232316 R GDP-mannose + Dolichyl phosphate <=> GDP + Dolichyl phosphate D-mannose; dolichyl-phosphate beta-D-mannosyltransferase complement(1231459..1232316) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282585 YP_003688053.1 CDS PFREUD_10960 NC_014215.1 1232288 1232371 R hypothetical protein complement(1232288..1232371) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283520 YP_003688054.1 CDS PFREUD_10970 NC_014215.1 1232352 1233986 R hypothetical protein complement(1232352..1233986) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282586 YP_003688055.1 CDS PFREUD_10980 NC_014215.1 1234080 1234544 R AsnC family transcriptional regulator complement(1234080..1234544) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282587 YP_003688056.1 CDS RED65_15082 NC_014215.1 1234629 1235315 R methionine biosynthesis protein MetW complement(1234629..1235315) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282588 YP_003688057.1 CDS pf3022 NC_014215.1 1235312 1236508 R acetyl-CoA + L-homoserine = CoA + O-acetyl-L-homoserine; homoserine O-acetyltransferase complement(1235312..1236508) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284171 YP_003688058.1 CDS PFREUD_11010 NC_014215.1 1236505 1236666 R hypothetical protein complement(1236505..1236666) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284046 YP_003688059.1 CDS PFREUD_11020 NC_014215.1 1236747 1237754 R transporter complement(1236747..1237754) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282589 YP_003688060.1 CDS PFREUD_11030 NC_014215.1 1237751 1238641 R Binding-protein-dependent transport systems inner membrane component complement(1237751..1238641) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282590 YP_003688061.1 CDS PFREUD_11040 NC_014215.1 1238949 1240529 R Integral membrane transport protein complement(1238949..1240529) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282591 YP_003688062.1 CDS luxS NC_014215.1 1240721 1241185 R S-ribosylhomocysteine lyase complement(1240721..1241185) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282592 YP_003688063.1 CDS int NC_014215.1 1241746 1242936 R Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment; phage integrase complement(1241746..1242936) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282593 YP_003688064.1 CDS PFREUD_11080 NC_014215.1 1242929 1243144 R hypothetical protein complement(1242929..1243144) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283753 YP_003688065.1 CDS PFREUD_11090 NC_014215.1 1243125 1243706 R hypothetical protein complement(1243125..1243706) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282594 YP_003688066.1 CDS PFREUD_11100 NC_014215.1 1243717 1244199 R ssDNA-binding protein complement(1243717..1244199) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282595 YP_003688067.1 CDS PFREUD_11130 NC_014215.1 1247876 1248430 D hypothetical protein 1247876..1248430 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282598 YP_003688068.1 CDS PFREUD_11140 NC_014215.1 1248527 1249483 D ATPase AAA 1248527..1249483 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282599 YP_003688069.1 CDS PFREUD_11150 NC_014215.1 1249480 1252092 D hypothetical protein 1249480..1252092 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282600 YP_003688070.1 CDS PFREUD_11160 NC_014215.1 1252145 1253644 D hypothetical protein 1252145..1253644 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282601 YP_003688071.1 CDS PFREUD_11170 NC_014215.1 1254242 1255915 D hypothetical protein 1254242..1255915 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282602 YP_003688072.1 CDS arsR3 NC_014215.1 1256255 1256560 R ArsR family transcriptional regulator complement(1256255..1256560) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282603 YP_003688073.1 CDS PFREUD_11190 NC_014215.1 1256553 1257074 R hypothetical protein complement(1256553..1257074) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283350 YP_003688074.1 CDS PFREUD_11200 NC_014215.1 1257245 1258120 D multidrug DMT transporter permease 1257245..1258120 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282604 YP_003688075.1 CDS PFREUD_11210 NC_014215.1 1258229 1259179 D zinc-containing alcohol dehydrogenase 1258229..1259179 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282605 YP_003688076.1 CDS tetR6 NC_014215.1 1259225 1259803 R TetR family transcriptional regulator complement(1259225..1259803) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282606 YP_003688077.1 CDS PFREUD_11250 NC_014215.1 1261454 1261963 D hypothetical protein 1261454..1261963 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282608 YP_003688078.1 CDS engA NC_014215.1 1261998 1263347 R GTP binding protein complement(1261998..1263347) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282609 YP_003688079.1 CDS cmk NC_014215.1 1263462 1264133 R Cytidylate kinase EC:2.7.4.14 catalyses the phosphorylation of cytidine 5prime-monophosphate (dCMP) to cytidine 5prime-diphosphate (dCDP) in the presence of ATP or GTP; cytidylate kinase complement(1263462..1264133) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283533 YP_003688080.1 CDS tyrA NC_014215.1 1264173 1265267 R Prephenate + NAD+ <=> 3-(4-Hydroxyphenyl)pyruvate + CO2 + NADH + H+; prephenate dehydrogenase complement(1264173..1265267) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283427 YP_003688081.1 CDS prcA NC_014215.1 1265269 1265994 R The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. Cleavage of peptide bonds with very broad specificity.; 20S proteasome subunit alpha complement(1265269..1265994) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284445 YP_003688082.1 CDS pcrB NC_014215.1 1265991 1266857 R The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; 20S proteasome subunit beta complement(1265991..1266857) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284114 YP_003688083.1 CDS PFREUD_11310 NC_014215.1 1266850 1267920 R S-adenosyl-L-methionine + tRNA <=> S-adenosyl-L-homocysteine + tRNA containing N1-methyladenine; tRNA (adenine-N1-)-methyltransferase complement(1266850..1267920) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284005 YP_003688084.1 CDS PFREUD_11320 NC_014215.1 1267917 1268642 R HAD-superfamily hydrolase complement(1267917..1268642) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282610 YP_003688085.1 CDS sppA NC_014215.1 1268826 1270082 D SppA, Periplasmic serine proteases 1268826..1270082 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282611 YP_003688086.1 CDS metH NC_014215.1 1270340 1273831 R 5-methyltetrahydrofolate + L-Homocysteine <=> Tetrahydrofolate + L-methionine; methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-methyltransferase) complement(1270340..1273831) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284295 YP_003688087.1 CDS PFREUD_11350 NC_014215.1 1273959 1274789 D hypothetical protein 1273959..1274789 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283880 YP_003688088.1 CDS pepC NC_014215.1 1274890 1276221 R Paralogue with PF#2086 . Inactivates bleomycin B2 (a cytotoxic glycometallopeptide) by hydrolysis of a carboxyamide bond of beta-aminoalanine, but also shows general aminopeptidase activity. The specificity varies somewhat with source, but amino acid arylamides of Met, Leu and Ala are preferred.; aminopeptidase complement(1274890..1276221) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282612 YP_003688089.1 CDS rpe NC_014215.1 1276281 1276949 R D-ribulose 5-phosphate = D-xylulose 5-phosphate; Ribulose-phosphate 3-epimerase complement(1276281..1276949) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284027 YP_003688090.1 CDS PFREUD_11380 NC_014215.1 1276978 1278297 R Sun, tRNA and rRNA cytosine-C5-methylases complement(1276978..1278297) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284194 YP_003688091.1 CDS fmt NC_014215.1 1278440 1279387 R L-methionyl-tRNA + 10-formyltetrahydrofolate <=> Tetrahydrofolate + N-formylmethionyl-tRNA; methionyl-tRNA formyltransferase complement(1278440..1279387) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282613 YP_003688092.1 CDS priA NC_014215.1 1279465 1281486 R Recognizes a specific hairpin sequence on phiX ssDNA. This structure is then recognized and bound by proteins priB and priC. formation of the primosome proceeds with the subsequent actions of dnaB, dnaC, dnaT and primase. PriA then functions as a helicase within the primosome; Primosomal protein N complement(1279465..1281486) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283564 YP_003688093.1 CDS metK NC_014215.1 1281597 1282787 R # Orthophosphate + Pyrophosphate + S-adenosyl-L-methionine <=> ATP + L-methionine + H2O / ATP + Selenomethionine + H2O <=> Orthophosphate + Pyrophosphate + Se-adenosylselenomethionine; S-adenosylmethionine synthetase complement(1281597..1282787) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284117 YP_003688094.1 CDS rpoZ NC_014215.1 1282853 1283209 R DNA-directed RNA polymerase subunit omega complement(1282853..1283209) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283881 YP_003688095.1 CDS gmk NC_014215.1 1283281 1283901 R ATP + GMP <=> ADP + GDP; guanylate kinase complement(1283281..1283901) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284234 YP_003688096.1 CDS mihF NC_014215.1 1283905 1284216 R Integration host factor MihF complement(1283905..1284216) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283645 YP_003688097.1 CDS pyrF NC_014215.1 1284379 1285188 R Orotidine 5 prime-phosphate <=> UMP + CO2; orotidine 5-phosphate decarboxylase complement(1284379..1285188) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283888 YP_003688098.1 CDS pyrD NC_014215.1 1285185 1286285 R dihydroorotate dehydrogenase complement(1285185..1286285) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284156 YP_003688099.1 CDS carb NC_014215.1 1286367 1289708 R 2 ATP + L-glutamine + HCO3- + H2O = 2 ADP + phosphate + L-glutamate + carbamoyl phosphate ; Binds 3 manganese ions per subunit; carbamoyl-phosphate synthase large subunit complement(1286367..1289708) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284154 YP_003688100.1 CDS carA NC_014215.1 1289708 1290892 R The product carbamoyl phosphate is an intermediate in the biosynthesis of arginine and the pyrimidine nucleotides; carbamoyl-phosphate synthase small subunit complement(1289708..1290892) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283393 YP_003688101.1 CDS PFREUD_11490 NC_014215.1 1290889 1291074 R hypothetical protein complement(1290889..1291074) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283392 YP_003688102.1 CDS nusB NC_014215.1 1291071 1291697 R NusB family. The NusB protein is involved in the regulation of rRNA biosynthesis by transcriptional antitermination.; transcription antitermination factor NusB complement(1291071..1291697) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282614 YP_003688103.1 CDS efp NC_014215.1 1291697 1292260 R elongation factor P complement(1291697..1292260) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283978 YP_003688104.1 CDS aroB NC_014215.1 1292437 1294086 R 2-Dehydro-3-deoxy-D-arabino-heptonate 7-phosphate <=> 3-Dehydroquinate + Orthophosphate; 3-dehydroquinate synthase complement(1292437..1294086) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283532 YP_003688105.1 CDS aroF NC_014215.1 1294083 1295285 R 5-O-(1-carboxyvinyl)-3-phosphoshikimate <=> Chorismate + Orthophosphate; chorismate synthase complement(1294083..1295285) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283339 YP_003688106.1 CDS PFREUD_11540 NC_014215.1 1295440 1296672 R 4-amino-4-deoxychorismate <=> 4-aminobenzoate + pyruvate; aminodeoxychorismate lyase complement(1295440..1296672) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283342 YP_003688107.1 CDS PFREUD_11550 NC_014215.1 1296647 1297192 R Could be a nuclease that resolves Holliday junction intermediates in genetic recombination.; Holliday junction resolvase complement(1296647..1297192) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282615 YP_003688108.1 CDS alaS NC_014215.1 1297176 1299863 R ATP + L-alanine + tRNA(Ala) <=> AMP + Pyrophosphate + L-Alanyl-tRNA; alanyl-tRNA synthetase complement(1297176..1299863) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282616 YP_003688109.1 CDS ldh1 NC_014215.1 1300028 1301008 R (S)-Lactate + NAD+ <=> pyruvate + NADH + H+; L-Lactate dehydrogenase complement(1300028..1301008) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283305 YP_003688110.1 CDS PFREUD_11580 NC_014215.1 1301063 1302487 R ATPase complement(1301063..1302487) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283813 YP_003688111.1 CDS aspS NC_014215.1 1302612 1304459 R aspartyl-tRNA synthetase complement(1302612..1304459) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282617 YP_003688112.1 CDS PFREUD_11600 NC_014215.1 1304659 1305732 R hypothetical protein complement(1304659..1305732) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283364 YP_003688113.1 CDS aldC NC_014215.1 1305941 1306756 R 2-acetolactate <=> (R)-acetoin + CO2 - (S)-2-acetolactate <=> (R)-acetoin + CO2; alpha-acetolactate decarboxylase complement(1305941..1306756) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282618 YP_003688114.1 CDS hisS NC_014215.1 1306870 1308201 R histidyl-tRNA synthetase complement(1306870..1308201) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283308 YP_003688115.1 CDS PFREUD_11630 NC_014215.1 1308201 1308887 R beta-lactamase complement(1308201..1308887) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283709 YP_003688116.1 CDS PFREUD_11640 NC_014215.1 1308919 1310163 D hypothetical protein 1308919..1310163 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282619 YP_003688117.1 CDS relA NC_014215.1 1310244 1312595 R ATP + GTP <=> AMP + Guanosine 3 prime -diphosphate 5 prime -triphosphate; GTP pyrophosphokinase complement(1310244..1312595) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282620 YP_003688118.1 CDS apt NC_014215.1 1312658 1313197 R AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate.; adenine phosphoribosyltransferase complement(1312658..1313197) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284173 YP_003688119.1 CDS secF NC_014215.1 1313200 1314447 R multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC.; protein-export membrane protein SecF complement(1313200..1314447) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283316 YP_003688120.1 CDS secD NC_014215.1 1314447 1316165 R protein-export membrane protein secD complement(1314447..1316165) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284273 YP_003688121.1 CDS yajC NC_014215.1 1316193 1316696 R transmembrane domain in N-term; Preprotein translocase subunit YajC complement(1316193..1316696) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284271 YP_003688122.1 CDS ruvB NC_014215.1 1316807 1317832 R The ruvA-ruvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is an helicase that mediates the Holliday junction migration by localized denaturation and reannealing; Holliday junction ATP-dependent DNA helicase complement(1316807..1317832) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284484 YP_003688123.1 CDS ruvA NC_014215.1 1317896 1318507 R The ruvA-ruvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is an helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of ruvB; Holliday junction ATP-dependent DNA helicase complement(1317896..1318507) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284258 YP_003688124.1 CDS ruvC NC_014215.1 1318504 1319115 R # nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5terminal phosphate and a 3terminal hydroxyl group; Holliday junction resolvase complement(1318504..1319115) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284257 YP_003688125.1 CDS PFREUD_11730 NC_014215.1 1319367 1320167 R hypothetical protein complement(1319367..1320167) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284259 YP_003688126.1 CDS PFREUD_11740 NC_014215.1 1320331 1321368 R N-acetyltransferase GCN5 complement(1320331..1321368) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282621 YP_003688127.1 CDS hisA NC_014215.1 1321365 1322090 R 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide = 5-((5-phospho-1-deoxyribulos-1-ylamino)methylideneamino)- 1-(5-phosphoribosyl)imidazole-4-carboxamide.; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(1321365..1322090) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282622 YP_003688128.1 CDS hisH NC_014215.1 1322159 1322836 R 5-[(5-phospho-1-deoxyribulos-1- ylamino)methylideneamino]-1-(5-phosphoribosyl)imidazole-4- carboxamide + L-glutamine = imidazole-glycerol phosphate + 5-aminoimidazol-4-carboxamide ribonucleotide + L-glutamate + H2O.; imidazole glycerol phosphate synthase subunit HisH complement(1322159..1322836) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283700 YP_003688129.1 CDS hisB NC_014215.1 1322833 1323441 R imidazoleglycerol-phosphate dehydratase complement(1322833..1323441) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283707 YP_003688130.1 CDS hisC NC_014215.1 1323438 1324661 R L-histidinol phosphate + 2-oxoglutarate = 3-(imidazol-4-yl)-2-oxopropyl phosphate + L-glutamate.; histidinol-phosphate aminotransferase complement(1323438..1324661) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283701 YP_003688131.1 CDS hisD NC_014215.1 1324658 1325971 R L-histidinol + 2 NAD+ = L-histidine + 2 NADH; histidinol dehydrogenase complement(1324658..1325971) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283702 YP_003688132.1 CDS PFREUD_11800 NC_014215.1 1326085 1326849 D hypothetical protein 1326085..1326849 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283703 YP_003688133.1 CDS ybaK/EbsC NC_014215.1 1326895 1327413 D YbaC/EbsC protein 1326895..1327413 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282623 YP_003688134.1 CDS PFREUD_11820 NC_014215.1 1327450 1328175 R hypothetical protein complement(1327450..1328175) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284486 YP_003688135.1 CDS dnaE1 NC_014215.1 1328248 1331820 R DNA polymerase III subunit alpha complement(1328248..1331820) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282624 YP_003688136.1 CDS PFREUD_11840 NC_014215.1 1332046 1332717 D hypothetical protein 1332046..1332717 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283509 YP_003688137.1 CDS gltD NC_014215.1 1332738 1334207 R 2 L-glutamate + NADP+ <=> L-glutamine + 2-Oxoglutarate + NADPH + H+; glutamate synthase small subunit complement(1332738..1334207) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282625 YP_003688138.1 CDS gltB NC_014215.1 1334200 1338708 R 2 L-glutamate + 2 Oxidized ferredoxin <=> L-glutamine + 2-Oxoglutarate + 2 Reduced ferredoxin; glutamate synthase large subunit complement(1334200..1338708) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283638 YP_003688139.1 CDS lgt NC_014215.1 1338852 1339823 R transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins; prolipoprotein diacylglyceryl transferase complement(1338852..1339823) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283637 YP_003688140.1 CDS trpA NC_014215.1 1339820 1340716 R tryptophan synthase subunit alpha complement(1339820..1340716) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283825 YP_003688141.1 CDS trpB NC_014215.1 1340713 1341966 R L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O; tryptophan synthase subunit beta complement(1340713..1341966) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284426 YP_003688142.1 CDS trpC NC_014215.1 1341959 1342819 R 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate = 1-C-(3-indolyl)-glycerol 3-phosphate + CO2 + H2O.; indole-3-glycerol phosphate synthase complement(1341959..1342819) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284427 YP_003688143.1 CDS trpE NC_014215.1 1342816 1344348 R Chorismate + NH3 <=> Anthranilate + pyruvate + H2O and Chorismate + L-glutamine <=> Anthranilate + pyruvate + L-glutamate; anthranilate synthase component I complement(1342816..1344348) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284429 YP_003688144.1 CDS hisI2 NC_014215.1 1344345 1344779 R phosphoribosyl-AMP + H2O <=> 5-(5-phospho-D-ribosylaminoformimino)-1-(5- phosphoribosyl)-imidazole-4-carboxamide; phosphoribosyl-AMP cyclohydrolase complement(1344345..1344779) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284431 YP_003688145.1 CDS PFREUD_11930 NC_014215.1 1344867 1345559 D hypothetical protein 1344867..1345559 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283708 YP_003688146.1 CDS glnS NC_014215.1 1345604 1347316 R glutaminyl-tRNA synthetase complement(1345604..1347316) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282626 YP_003688147.1 CDS pgm2 NC_014215.1 1347338 1347961 R 2-phospho-D-glycerate <=> 3-phospho-D-glycerate and 3-phospho-D-glyceroyl phosphate <=> 2,3-Bisphospho-D-glycerate; phosphoglycerate mutase complement(1347338..1347961) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283626 YP_003688148.1 CDS PFREUD_11960 NC_014215.1 1348150 1349130 D ABC transporter substrate-binding protein 1348150..1349130 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284063 YP_003688149.1 CDS PFREUD_11970 NC_014215.1 1349137 1350090 D ABC transporter permease 1349137..1350090 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282627 YP_003688150.1 CDS PFREUD_11980 NC_014215.1 1350092 1350883 D ABC transporter ATP-binding protein 1350092..1350883 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282628 YP_003688151.1 CDS PFREUD_11990 NC_014215.1 1351049 1352086 D hypothetical protein 1351049..1352086 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282629 YP_003688152.1 CDS PFREUD_12000 NC_014215.1 1352225 1353025 R LMBE-related protein complement(1352225..1353025) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282630 YP_003688153.1 CDS PFREUD_12010 NC_014215.1 1353473 1354090 D hypothetical protein 1353473..1354090 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282631 YP_003688154.1 CDS PFREUD_12020 NC_014215.1 1354140 1354757 R SUA5/yciO/yrdC family protein complement(1354140..1354757) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282632 YP_003688155.1 CDS PFREUD_12030 NC_014215.1 1354826 1355248 R hypothetical protein complement(1354826..1355248) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282633 YP_003688156.1 CDS pfp NC_014215.1 1355472 1356686 D glycolyse : catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. PPi-PFKs are dimeric and nonallosteric . evidenced as a heat stress protein in P.freudenreichii.; pyrophosphate phosphofructokinase 1355472..1356686 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282634 YP_003688157.1 CDS PFREUD_12060 NC_014215.1 1357017 1357565 R hypothetical protein complement(1357017..1357565) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282635 YP_003688158.1 CDS hrdD1 NC_014215.1 1357663 1358481 R Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase principal sigma factor HrdD complement(1357663..1358481) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282636 YP_003688159.1 CDS dnaG1 NC_014215.1 1358590 1360458 R DNA primase complement(1358590..1360458) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283715 YP_003688160.1 CDS tenA NC_014215.1 1360625 1361323 D ATP + 4-amino-2-methyl-5-phosphomethylpyrimidine <=> ADP + 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate; phosphomethylpyrimidine kinase 1360625..1361323 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283511 YP_003688161.1 CDS PFREUD_12100 NC_014215.1 1361397 1361693 D hypothetical protein 1361397..1361693 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284318 YP_003688162.1 CDS PFREUD_12110 NC_014215.1 1361963 1363396 D hypothetical protein 1361963..1363396 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282637 YP_003688163.1 CDS PFREUD_12120 NC_014215.1 1363501 1364457 D ADP-D-ribosyl-[dinitrogen reductase] + H2O <=> [Dinitrogen reductase] + ADP-D-ribose; ADP-ribosyl-[dinitrogen reductase] hydrolase 1363501..1364457 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282638 YP_003688164.1 CDS PFREUD_12130 NC_014215.1 1364608 1364754 D hypothetical protein 1364608..1364754 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282639 YP_003688165.1 CDS PFREUD_12140 NC_014215.1 1365089 1365196 D hypothetical protein 1365089..1365196 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282640 YP_003688166.1 CDS otsB NC_014215.1 1365508 1366365 R Catalytic activity: trehalose 6-phosphate + H2O = trehalose + phosphate. Annotated from work of Cardoso et al, 2007 (PubMed 17185556); trehalose-phosphatase complement(1365508..1366365) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282642 YP_003688167.1 CDS otsA NC_014215.1 1366527 1368008 D Annotated from work of Cardoso et al, 2007 (PubMed 17185556) Molecular function: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity.; trehalose-6-phosphate synthase 1366527..1368008 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283990 YP_003688168.1 CDS pgm NC_014215.1 1368267 1368776 R 2-phospho-D-glycerate <=> 3-phospho-D-glycerate and 3-phospho-D-glyceroyl phosphate <=> 2,3-Bisphospho-D-glycerate; phosphoglycerate mutase complement(1368267..1368776) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283989 YP_003688169.1 CDS cbiB/cobD NC_014215.1 1368807 1369880 D responsible for the conversion of adenosylcobyric acid to adenosylcobinamide or adenosylcobinamide phosphate.; CbiB/CobD 1368807..1369880 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284060 YP_003688170.1 CDS cbiP/cobQ NC_014215.1 1369877 1371322 D Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; Cobyric acid synthase CbiP/CobQ 1369877..1371322 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283397 YP_003688171.1 CDS cobA2 NC_014215.1 1371319 1371921 D Cob(I)yrinate a,c diamide + ATP <=> adenosyl cobyrinate a,c diamide + Triphosphate; cob(I)alamin adenosyltransferase 1371319..1371921 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283408 YP_003688172.1 CDS cbiA NC_014215.1 1371918 1374500 D Cobyrinate + 2 L-glutamine + 2 ATP + 2 H2O <=> Cob(II)yrinate a,c diamide + 2 L-glutamate + 2 ADP + 2 Orthophosphate; cobyrinic acid A,C-diamide synthase CbiA 1371918..1374500 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283433 YP_003688173.1 CDS cobU NC_014215.1 1374497 1375168 D adenosyl cobinamide phosphate + GTP <=> adenosine-GDP-cobinamide + Pyrophosphate; CobU Bifunctional cobalamin biosynthesis pyrophosphate enzyme 1374497..1375168 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283396 YP_003688174.1 CDS cobS NC_014215.1 1375128 1375949 D Cobamide coenzyme + GMP <=> adenosine-GDP-cobinamide + alpha-Ribazole; cobalamin 5-phosphate synthase 1375128..1375949 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283438 YP_003688175.1 CDS cobR NC_014215.1 1376043 1376657 D transcriptional regulator 1376043..1376657 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283437 YP_003688176.1 CDS PFREUD_12260 NC_014215.1 1376654 1377466 D hypothetical protein 1376654..1377466 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283436 YP_003688177.1 CDS PFREUD_12270 NC_014215.1 1377471 1379678 D transporter 1377471..1379678 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282643 YP_003688178.1 CDS PFREUD_12280 NC_014215.1 1379651 1381081 R involved in tRNA maturation; ribonuclease_BN complement(1379651..1381081) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282644 YP_003688179.1 CDS PFREUD_12290 NC_014215.1 1380150 1380722 D hypothetical protein 1380150..1380722 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282645 YP_003688180.1 CDS gcvP NC_014215.1 1381117 1384032 R glycine + Lipoylprotein <=> S-aminomethyldihydrolipoylprotein + CO2 . The glycine cleavage system is composed of four proteins: P, T, L and H; glycine cleavage system protein P complement(1381117..1384032) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282646 YP_003688181.1 CDS PFREUD_12310 NC_014215.1 1384184 1384759 R The MERR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporters genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements.; MerR family transcriptional regulator complement(1384184..1384759) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283605 YP_003688182.1 CDS PFREUD_12320 NC_014215.1 1384940 1385401 R hypothetical protein complement(1384940..1385401) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282647 YP_003688183.1 CDS merR1 NC_014215.1 1385403 1386137 R MerR, which is found in many bacterial species mediates the mercuric-dependent induction of the mercury resistance operon. In the absence of mercury merR represses transcription by binding tightly, as a dimer, to the mer operator region; when mercury is present the dimeric complex binds a single ion and becomes a potent transcriptional activator, while remaining bound to the mer site; MerR family transcriptional regulator complement(1385403..1386137) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282648 YP_003688184.1 CDS PFREUD_12340 NC_014215.1 1386137 1386625 R involved in signal transduction mechanisms; forkhead-associated protein complement(1386137..1386625) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283873 YP_003688185.1 CDS gcvH NC_014215.1 1386791 1387174 R The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein; glycine cleavage system protein H complement(1386791..1387174) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282649 YP_003688186.1 CDS PFREUD_12360 NC_014215.1 1387286 1388020 R hypothetical protein complement(1387286..1388020) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283604 YP_003688187.1 CDS PFREUD_12370 NC_014215.1 1388013 1388345 R This family consists of several bacterial small basic proteins of around 100 residues in length. The function of this family is unknown.; hypothetical protein complement(1388013..1388345) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282650 YP_003688188.1 CDS PFREUD_12380 NC_014215.1 1388373 1389224 R hypothetical protein complement(1388373..1389224) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282651 YP_003688189.1 CDS pgs1 NC_014215.1 1389221 1389898 R CDP-diacylglycerol + sn-glycerol 3-phosphate <=> CMP + phosphatidylglycerophosphate; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(1389221..1389898) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282652 YP_003688190.1 CDS pimA NC_014215.1 1389938 1391083 R transfers one or more alpha-D-mannose residues from GDP-mannose to positions 2,6 and others in 1-phosphatidyl-myo-inositol. transferase activity. Belongs to the glycosyltransferase 1 family.; phosphatidylinositol alpha-mannosyltransferase complement(1389938..1391083) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284064 YP_003688191.1 CDS PFREUD_12410 NC_014215.1 1391080 1391922 R lipopolysaccharide core region biosynthetic process; acyltransferase complement(1391080..1391922) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284073 YP_003688192.1 CDS pgs2 NC_014215.1 1391955 1392584 R CDP-diacylglycerol + sn-glycerol 3-phosphate <=> CMP + phosphatidylglycerophosphate; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(1391955..1392584) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282653 YP_003688193.1 CDS PFREUD_12430 NC_014215.1 1392577 1393182 R HIT family protein complement(1392577..1393182) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284065 YP_003688194.1 CDS thrS NC_014215.1 1393175 1395217 R ATP + L-Threonine + tRNA(Thr) <=> AMP + Pyrophosphate + L-Threonyl-tRNA(Thr); threonyl-tRNA synthetase complement(1393175..1395217) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282654 YP_003688195.1 CDS PFREUD_12460 NC_014215.1 1395570 1395803 R hypothetical protein complement(1395570..1395803) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282655 YP_003688196.1 CDS PFREUD_12500 NC_014215.1 1396945 1397787 D hypothetical protein 1396945..1397787 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282659 YP_003688197.1 CDS PFREUD_12510 NC_014215.1 1397913 1398788 R hypothetical protein complement(1397913..1398788) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282660 YP_003688198.1 CDS msrB NC_014215.1 1398936 1399388 D L-methionine + thioredoxin disulfide + H(2)O <=> L-methionine (S)-S-oxide + thioredoxin # The reaction occurs in the opposite direction to that given above. Dithiothreitol can replace reduced thioredoxin. methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress.; L-methionine (S)-S-oxide reductase 1398936..1399388 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282661 YP_003688199.1 CDS ybaK NC_014215.1 1399412 1399936 D thought to be involved in oligo-nucleotide binding, with possible roles in recognition/discrimination or editing of prolyl-tRNA.; prolyl-tRNA synthetase 1399412..1399936 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283914 YP_003688200.1 CDS PFREUD_12540 NC_014215.1 1400022 1400621 D hypothetical protein 1400022..1400621 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284485 YP_003688201.1 CDS rnd NC_014215.1 1400618 1401955 D This is an endoribonuclease that cleaves double-stranded RNA molecules; ribonuclease D (3-5 exonuclease) 1400618..1401955 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282662 YP_003688202.1 CDS dxs NC_014215.1 1402007 1403986 R pyruvate + (2R)-2-Hydroxy-3-(phosphonooxy)-propanal <=> 1-deoxy-D-xylulose 5-phosphate + CO2; deoxyxylulose-5-phosphate synthase complement(1402007..1403986) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284190 YP_003688203.1 CDS PFREUD_12570 NC_014215.1 1404073 1404591 R hypothetical protein complement(1404073..1404591) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283530 YP_003688204.1 CDS PFREUD_12580 NC_014215.1 1404753 1405055 R hypothetical protein complement(1404753..1405055) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282663 YP_003688205.1 CDS acn NC_014215.1 1405167 1407839 R Citrate = isocitrate. Binds 1 4Fe-4S cluster per subunit. Repressed by acnR; aconitase complement(1405167..1407839) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282664 YP_003688206.1 CDS PFREUD_12600 NC_014215.1 1408178 1409524 R sugar transporter, major facilitator superfamily complement(1408178..1409524) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283291 YP_003688207.1 CDS Gst NC_014215.1 1409632 1410660 R glutathione S-transferase complement(1409632..1410660) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282665 YP_003688208.1 CDS PFREUD_12620 NC_014215.1 1410966 1411061 D hypothetical protein 1410966..1411061 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283666 YP_003688209.1 CDS cysK NC_014215.1 1411152 1412126 D O3-acetyl-L-serine + H2S = L-cysteine + acetate. COFACTOR: Pyridoxal phosphate Belongs to the cysteine synthase/cystathionine beta-synthase family; cysteine synthase 1411152..1412126 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282666 YP_003688210.1 CDS PFREUD_12640 NC_014215.1 1412123 1412773 D acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions.; acetyltransferase 1412123..1412773 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283464 YP_003688211.1 CDS PFREUD_12670 NC_014215.1 1413865 1414125 R hypothetical protein complement(1413865..1414125) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284491 YP_003688212.1 CDS PFREUD_12680 NC_014215.1 1414122 1415300 R S-adenosyl-L-methionine + tRNA <=> S-adenosyl-L-homocysteine + tRNA containing thymine; tRNA (uracil-5-)-methyltransferase complement(1414122..1415300) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282668 YP_003688213.1 CDS ydaO NC_014215.1 1415297 1417291 R cellular component: membrane, amino acid transporter activity; amino acid ABC transporter permease complement(1415297..1417291) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282669 YP_003688214.1 CDS TrkA NC_014215.1 1417464 1418126 D Trk system potassium uptake protein TrkA 1417464..1418126 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284488 YP_003688215.1 CDS trkA NC_014215.1 1418140 1418808 D Trk system potassium uptake protein TrkA 1418140..1418808 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284421 YP_003688216.1 CDS PFREUD_12720 NC_014215.1 1418815 1419195 R nucleic acid-binding protein complement(1418815..1419195) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284422 YP_003688217.1 CDS PFREUD_12730 NC_014215.1 1419192 1420013 R hypothetical protein complement(1419192..1420013) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282670 YP_003688218.1 CDS PFREUD_12740 NC_014215.1 1420303 1420623 D hypothetical protein 1420303..1420623 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282671 YP_003688219.1 CDS PFREUD_12750 NC_014215.1 1420735 1421109 R hypothetical protein complement(1420735..1421109) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282672 YP_003688220.1 CDS PFREUD_12760 NC_014215.1 1421325 1422653 D hypothetical protein 1421325..1422653 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282673 YP_003688221.1 CDS PFREUD_12770 NC_014215.1 1422756 1423907 R These enzymes catalyse the cleavage of phosphodiester and phosphosulfate bonds in NAD, deoxynucleotides and nucleotide sugars; type I phosphodiesterase / nucleotide pyrophosphatase complement(1422756..1423907) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282674 YP_003688222.1 CDS PFREUD_12780 NC_014215.1 1423911 1424504 R hypothetical protein complement(1423911..1424504) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282675 YP_003688223.1 CDS PFREUD_12790 NC_014215.1 1424560 1425645 D hypothetical protein 1424560..1425645 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282676 YP_003688224.1 CDS gyrA2 NC_014215.1 1425771 1428233 D DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.; DNA gyrase subunit A 1425771..1428233 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282677 YP_003688225.1 CDS panE NC_014215.1 1428339 1429256 D (R)-Pantoate + NADP+ <=> 2-Dehydropantoate + NADPH + H+; 2-dehydropantoate 2-reductase 1428339..1429256 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283681 YP_003688226.1 CDS gyrB1 NC_014215.1 1429281 1431401 R DNA gyrase subunit B complement(1429281..1431401) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283995 YP_003688227.1 CDS PFREUD_12830 NC_014215.1 1431558 1431755 D hypothetical protein 1431558..1431755 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283682 YP_003688228.1 CDS ldh2 NC_014215.1 1431901 1432866 D (S)-Lactate + NAD+ <=> pyruvate + NADH + H+; L-lactate dehydrogenase 1431901..1432866 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282678 YP_003688229.1 CDS hrdB NC_014215.1 1432954 1434483 R RNA polymerase principal sigma factor HrdB complement(1432954..1434483) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283814 YP_003688230.1 CDS hrdD2 NC_014215.1 1434842 1435771 D Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.; RNA polymerase principal sigma factor HrdD 1434842..1435771 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283714 YP_003688231.1 CDS PFREUD_12890 NC_014215.1 1437161 1437640 D ABC transporter 1437161..1437640 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283807 YP_003688232.1 CDS PFREUD_12900 NC_014215.1 1437510 1438502 D ABC transporter 1437510..1438502 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282679 YP_003688233.1 CDS pf1637 NC_014215.1 1438515 1439390 R carboxylic ester hydrolase complement(1438515..1439390) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282680 YP_003688234.1 CDS hrpA2 NC_014215.1 1439498 1443466 R ATP-dependent helicase HrpA complement(1439498..1443466) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284033 YP_003688235.1 CDS tnpB NC_014215.1 1443529 1444416 R transposase complement(1443529..1444416) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283718 YP_003688236.1 CDS TnpD NC_014215.1 1444449 1444793 R transposase IS3/IS911 complement(1444449..1444793) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284398 YP_003688237.1 CDS phk NC_014215.1 1444957 1447587 R phosphoketolase pyrophosphate complement(1444957..1447587) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284409 YP_003688238.1 CDS PFREUD_12940 NC_014215.1 1447647 1448582 R permease complement(1447647..1448582) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284069 YP_003688240.1 CDS deoR2 NC_014215.1 1448785 1449738 D Zeng X., Saxild H.H.; dentification and characterization of a DeoR-specific operator sequence essential for induction of dra-nupC-pdp operon expression in Bacillus subtilis J. Bacteriol. 181:1719-1727(1999).; DeoR family transcriptional regulator 1448785..1449738 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282682 YP_003688241.1 CDS glpC NC_014215.1 1449821 1451212 R Composed of a catalytic glpA/B dimer and of glpC. electron transfer protein; may also function as the membrane anchor for the glpAB dimer; anaerobic glycerol-3-phosphate dehydrogenase subunit C complement(1449821..1451212) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283488 YP_003688242.1 CDS glpB NC_014215.1 1451209 1452519 R Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor. sn-glycerol 3-phosphate + acceptor = glycerone phosphate + reduced acceptor.; anaerobic glycerol-3-phosphate dehydrogenase subunit B complement(1451209..1452519) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283629 YP_003688243.1 CDS glpA NC_014215.1 1452516 1454144 R anaerobic glycerol-3-phosphate dehydrogenase subunit A complement(1452516..1454144) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283628 YP_003688244.1 CDS pf379 NC_014215.1 1454354 1455277 D carboxylic ester hydrolase 1454354..1455277 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283627 YP_003688245.1 CDS nrdJ NC_014215.1 1455386 1458277 R 2 prime-deoxyribonucleoside diphosphate + Oxidized thioredoxin + H2O <=> ribonucleoside diphosphate + thioredoxin; vitamin B12-dependent ribonucleotide reductase complement(1455386..1458277) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284047 YP_003688246.1 CDS nrdR NC_014215.1 1458463 1458960 R repress transcription of PF # 2791; NrdR family transcriptional regulator complement(1458463..1458960) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283959 YP_003688247.1 CDS PFREUD_13030 NC_014215.1 1459295 1460026 R hypothetical protein complement(1459295..1460026) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283960 YP_003688248.1 CDS lexA NC_014215.1 1460350 1461192 D Represses genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of ss DNA, recA interacts with lexA causing autocatalytic cleavage which disrupts the DNA-binding part of lexA, leading to derepression of the SOS regulon and eventually DNA repair. Hydrolysis of Ala-|-Gly bond in repressor lexA. Belongs to the peptidase S24 family. Homodimer.; peptidase S24 1460350..1461192 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282683 YP_003688249.1 CDS dinG NC_014215.1 1461196 1463313 R helicase involved in DNA repair and perhaps also replication; ATP-dependent helicase complement(1461196..1463313) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283824 YP_003688250.1 CDS PFREUD_13060 NC_014215.1 1463426 1464847 R . Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane. Iron transport may be ATP dependent; FeoB, Ferrous iron transport protein B complement(1463426..1464847) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283499 YP_003688251.1 CDS dapF NC_014215.1 1464906 1465739 R LL-2,6-diaminoheptanedioate <=> meso-2,6-diaminoheptanedioate; diaminopimelate epimerase complement(1464906..1465739) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282684 YP_003688252.1 CDS miaA NC_014215.1 1465763 1466749 R Isopentenyl diphosphate + tRNA <=> Pyrophosphate + tRNA containing 6-isopentenyladenosine; tRNA isopentenyltransferase complement(1465763..1466749) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283480 YP_003688253.1 CDS miaB1 NC_014215.1 1466746 1468260 R 2-methylthioadenine synthetase complement(1466746..1468260) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283885 YP_003688254.1 CDS gluA NC_014215.1 1468364 1469179 D ATP-binding protein of ABC transporter for glutamate 1468364..1469179 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283886 YP_003688255.1 CDS PFREUD_13110 NC_014215.1 1469189 1470724 R metal dependent phosphohydrolase complement(1469189..1470724) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283640 YP_003688256.1 CDS recX NC_014215.1 1470886 1471500 R RecX is a putative bacterial regulatory protein. The gene encoding RecX is found downstream of recA, and is thought to interact with the RecA protein.; RecX family transcriptional regulator complement(1470886..1471500) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282685 YP_003688257.1 CDS recA NC_014215.1 1471503 1472621 R recombinase A complement(1471503..1472621) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284170 YP_003688258.1 CDS PFREUD_13140 NC_014215.1 1472903 1473097 D hypothetical protein 1472903..1473097 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284161 YP_003688259.1 CDS PFREUD_13150 NC_014215.1 1473201 1477880 D ATP-dependent helicase 1473201..1477880 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282686 YP_003688260.1 CDS PFREUD_13160 NC_014215.1 1478102 1478395 R Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.; XRE family transcriptional regulator complement(1478102..1478395) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282687 YP_003688261.1 CDS PFREUD_13170 NC_014215.1 1478346 1478465 R hypothetical protein complement(1478346..1478465) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282688 YP_003688262.1 CDS cinA NC_014215.1 1478575 1479078 R CinA, Competence-damaged protein complement(1478575..1479078) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282689 YP_003688263.1 CDS PFREUD_13190 NC_014215.1 1479071 1479724 R CDP-diacylglycerol + sn-glycerol 3-phosphate <=> CMP + phosphatidylglycerophosphate; phosphatidylglycerophosphate synthase complement(1479071..1479724) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283417 YP_003688264.1 CDS miaB2 NC_014215.1 1479729 1481162 R 2-methylthioadenine synthetase complement(1479729..1481162) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282690 YP_003688265.1 CDS ftsK NC_014215.1 1481242 1483725 R DNA motor protein, which is both required to move DNA out of the region of the septum during cell division and for the septum formation. Tracks DNA in an ATP-dependent manner by generating positive supercoils in front of it and negative supercoils behind it. protein located at the septum; DNA translocase FtsK complement(1481242..1483725) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283887 YP_003688266.1 CDS thiL NC_014215.1 1483797 1484780 R ATP + Thiamin monophosphate <=> ADP + Thiamin diphosphate; thiamine monophosphate kinase complement(1483797..1484780) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283579 YP_003688267.1 CDS PFREUD_13230 NC_014215.1 1484791 1485525 R transcriptional regulator complement(1484791..1485525) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284334 YP_003688268.1 CDS PFREUD_13240 NC_014215.1 1485629 1486630 D hypothetical protein 1485629..1486630 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282691 YP_003688269.1 CDS ddlA NC_014215.1 1486669 1487796 R Involvedin the synthesis of a cell-wall peptide . ATP + 2 D-alanine <=> ADP + Orthophosphate + D-Alanyl-D-alanine; D-alanine--D-alanine ligase complement(1486669..1487796) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282692 YP_003688270.1 CDS plsC1 NC_014215.1 1487870 1488664 R 1-acylglycerol-3-phosphate O-acyltransferase complement(1487870..1488664) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283484 YP_003688271.1 CDS leuD NC_014215.1 1488805 1489401 R * (2S)-2-Isopropylmalate <=> 2-Isopropylmaleate + H2O; 3-isopropylmalate dehydratase small subunit complement(1488805..1489401) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284081 YP_003688272.1 CDS leuC NC_014215.1 1489415 1490815 R (2S)-2-Isopropylmalate <=> 2-Isopropylmaleate + H2O; 3-isopropylmalate dehydratase large subunit complement(1489415..1490815) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283822 YP_003688273.1 CDS iclR NC_014215.1 1490868 1491596 D This family of bacterial transcriptional regulators includes the glycerol operon regulatory protein and acetate operon repressor both of which are members of the iclR family.; IclR family transcriptional regulator 1490868..1491596 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283821 YP_003688274.1 CDS PFREUD_13320 NC_014215.1 1491998 1493092 R membrane protease complement(1491998..1493092) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282694 YP_003688275.1 CDS PPA1366 NC_014215.1 1493100 1493945 R 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase complement(1493100..1493945) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282695 YP_003688276.1 CDS leuA2 NC_014215.1 1494005 1495603 R (2S)-2-Isopropylmalate + CoA <=> acetyl-CoA + 3-methyl-2-oxobutanoic acid + H2O; 2-isopropylmalate synthase complement(1494005..1495603) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284100 YP_003688277.1 CDS ilvE NC_014215.1 1495635 1496720 R Catalyzes the first reaction in the catabolism of the branched subunit amino acids leucine, isoleucine, and valine. pyridoxal-phosphate dependent enzymes; branched-subunit amino acid aminotransferase complement(1495635..1496720) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283819 YP_003688278.1 CDS leuB NC_014215.1 1496886 1497950 D (2R,3S)-3-Isopropylmalate + NAD+ <=> (2S)-2-Isopropyl-3-oxosuccinate + NADH + H+; 3-isopropylmalate dehydrogenase 1496886..1497950 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283741 YP_003688279.1 CDS PFREUD_13370 NC_014215.1 1498238 1498825 D hypothetical protein 1498238..1498825 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283820 YP_003688280.1 CDS PFREUD_13380 NC_014215.1 1498807 1499670 D hypothetical protein 1498807..1499670 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282696 YP_003688281.1 CDS ilvC NC_014215.1 1499829 1500860 R 2-acetolactate + NADPH + H+ <=> 2,3-dihydroxy-3-methylbutanoate + NADP+; ketol-acid reductoisomerase complement(1499829..1500860) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282697 YP_003688282.1 CDS ilvN NC_014215.1 1500905 1501411 R 2-acetolactate + CO2 <=> 2 pyruvate - amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 1/4.; acetolactate synthase small subunit complement(1500905..1501411) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283739 YP_003688283.1 CDS ilvB NC_014215.1 1501429 1503189 R 2-acetolactate + CO2 <=> 2 pyruvate - amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 1/4.; acetolactate synthase large subunit complement(1501429..1503189) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283742 YP_003688284.1 CDS PFREUD_13420 NC_014215.1 1503488 1504690 R hypothetical protein complement(1503488..1504690) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283738 YP_003688285.1 CDS hisF NC_014215.1 1504698 1505462 R imidazole glycerol phosphate synthase subunit HisF complement(1504698..1505462) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282698 YP_003688286.1 CDS PFREUD_13440 NC_014215.1 1505547 1506563 D aldo/keto reductase 1505547..1506563 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283705 YP_003688287.1 CDS PFREUD_13450 NC_014215.1 1506678 1507007 R antibiotic biosynthesis monooxygenase complement(1506678..1507007) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282699 YP_003688288.1 CDS PFREUD_13460 NC_014215.1 1507067 1509868 R Superfamily II RNA helicase complement(1507067..1509868) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282700 YP_003688289.1 CDS cof2 NC_014215.1 1510004 1510861 D Cof protein:HAD-superfamily hydrolase subfamily IIB 1510004..1510861 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282701 YP_003688290.1 CDS PFREUD_13480 NC_014215.1 1510902 1511081 R hypothetical protein complement(1510902..1511081) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283441 YP_003688291.1 CDS tnpA NC_014215.1 1511118 1512083 R transposase complement(1511118..1512083) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282702 YP_003688292.1 CDS PFREUD_13490 NC_014215.1 1512484 1513359 R hypothetical protein complement(1512484..1513359) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284374 YP_003688294.1 CDS tatC NC_014215.1 1513375 1514247 R Required for correct localization of precursor proteins bearing signal peptides with the twin arginine conserved motif S/T-R-R-X-F-L-K. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export; Sec-independent protein translocase protein TatC complement(1513375..1514247) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282704 YP_003688295.1 CDS PFREUD_13520 NC_014215.1 1514266 1514574 R transmembran, Members of this family in E.coli are involved in export of redox proteins with a twin arginin leader motif.; Redox protein export complement(1514266..1514574) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284316 YP_003688296.1 CDS PFREUD_13530 NC_014215.1 1514676 1515635 R Regulatory protein complement(1514676..1515635) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282705 YP_003688297.1 CDS PFREUD_13540 NC_014215.1 1515622 1516590 R DeoR family transcriptional regulator complement(1515622..1516590) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282706 YP_003688298.1 CDS gluQ NC_014215.1 1516659 1517618 D Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; glutamyl-Q tRNA(Asp) synthetase 1516659..1517618 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282707 YP_003688299.1 CDS PFREUD_13560 NC_014215.1 1517761 1518825 R Molecular function: peptidyl-prolyl cis-trans isomerase activity, Biological process: protein folding; peptidyl-prolyl cis-trans isomerase complement(1517761..1518825) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283641 YP_003688300.1 CDS PFREUD_13570 NC_014215.1 1518905 1519552 R Molecular function: isomerase activity, Biological process: protein folding; FKBP-type peptidylprolyl isomerase complement(1518905..1519552) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282708 YP_003688301.1 CDS rluB NC_014215.1 1519612 1520439 R RNA uridine = RNA pseudouridine.; pseudouridine synthase complement(1519612..1520439) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282709 YP_003688302.1 CDS PFREUD_13590 NC_014215.1 1520387 1521064 R This family of conserved bacterial proteins are thought to possibly be helix-turn-helix type transcriptional regulators; transcriptional regulator complement(1520387..1521064) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284184 YP_003688303.1 CDS scpA NC_014215.1 1521139 1522068 R Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpB that pull DNA away from mid-cell into both cell halves; segregation and condensation protein A complement(1521139..1522068) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282710 YP_003688304.1 CDS PFREUD_13610 NC_014215.1 1522034 1522309 R hypothetical protein complement(1522034..1522309) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284262 YP_003688305.1 CDS PFREUD_13620 NC_014215.1 1522294 1523190 R ATPase complement(1522294..1523190) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282711 YP_003688306.1 CDS xerD NC_014215.1 1523311 1524306 R Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids; site-specific recombinase complement(1523311..1524306) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282712 YP_003688307.1 CDS nudF NC_014215.1 1524299 1524961 R ADP-ribose + H2O <=> AMP + D-ribose 5-phosphate; ADP-ribose pyrophosphatase complement(1524299..1524961) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284478 YP_003688308.1 CDS pyrG NC_014215.1 1524954 1526708 R ATP + UTP + NH3 <=> ADP + Orthophosphate + CTP ATP + UTP + L-glutamine + H2O <=> ADP + Orthophosphate + CTP + L-glutamate; CTP synthase complement(1524954..1526708) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283962 YP_003688309.1 CDS recN NC_014215.1 1526795 1528486 R ABC_RecN, RecN ATPase involved in DNA repair; DNA repair protein complement(1526795..1528486) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284157 YP_003688310.1 CDS ppnK NC_014215.1 1528480 1529403 R inorganic polyphosphate/ATP-NAD kinase complement(1528480..1529403) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284167 YP_003688311.1 CDS PFREUD_13680 NC_014215.1 1529468 1529707 R hypothetical protein complement(1529468..1529707) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284111 YP_003688312.1 CDS PFREUD_13690 NC_014215.1 1529780 1530340 R cobalt permease complement(1529780..1530340) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282713 YP_003688314.1 CDS PFREUD_13710 NC_014215.1 1530384 1531112 R ABC transporter ATPase complement(1530384..1531112) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282715 YP_003688315.1 CDS PFREUD_13720 NC_014215.1 1531126 1531755 R BioY family. A number of bacterial genes are involved in bioconversion of pimelate into dethiobiotin. BioY is involved in this process, however the exact function of the protein is unknown.; BioY family protein. membrane protein complement(1531126..1531755) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282716 YP_003688316.1 CDS nagD NC_014215.1 1531944 1532975 R sugar phosphatases of the HAD superfamily; phosphatase complement(1531944..1532975) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282717 YP_003688317.1 CDS PFREUD_13740 NC_014215.1 1532972 1533997 R hypothetical protein complement(1532972..1533997) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283941 YP_003688318.1 CDS PFREUD_13760 NC_014215.1 1534072 1534812 R hypothetical protein complement(1534072..1534812) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282718 YP_003688319.1 CDS tyrS NC_014215.1 1541011 1542279 R tyrosyl-tRNA synthetase complement(1541011..1542279) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282719 YP_003688320.1 CDS argH NC_014215.1 1542407 1543765 R N-(L-arginino)succinate <=> Fumarate + L-arginine; argininosuccinate lyase complement(1542407..1543765) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284447 YP_003688321.1 CDS argR NC_014215.1 1543832 1544386 R arginine repressor ArgR complement(1543832..1544386) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283333 YP_003688322.1 CDS argD NC_014215.1 1544383 1545606 R N2-acetyl-L-ornithine + 2-oxoglutarate = N-acetyl-L-glutamate 5-semialdehyde + L-glutamate. cofactor : Pyridoxal phosphate; acetylornithine aminotransferase complement(1544383..1545606) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283336 YP_003688323.1 CDS argB NC_014215.1 1545599 1546510 R ATP + N-acetyl-L-glutamate = ADP + N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(1545599..1546510) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283330 YP_003688324.1 CDS ArgJ NC_014215.1 1546507 1547658 R glutamate N-acetyltransferase complement(1546507..1547658) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283328 YP_003688325.1 CDS argC NC_014215.1 1547655 1548686 R N-acetyl-L-glutamate 5-semialdehyde + NADP+ + phosphate = N-acetyl-5-glutamyl phosphate + NADPH.; N-acetyl-gamma-glutamyl-phosphate reductase complement(1547655..1548686) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283334 YP_003688326.1 CDS got NC_014215.1 1548851 1550065 D aspartate aminotransferase 1548851..1550065 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283329 YP_003688327.1 CDS pheT NC_014215.1 1550193 1552721 R ATP + L-Phenylalanine + tRNA(Phe) <=> AMP + Pyrophosphate + L-Phenylalanyl-tRNA(Phe); phenylalanyl-tRNA synthetase subunit beta complement(1550193..1552721) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283654 YP_003688328.1 CDS pheS NC_014215.1 1552718 1553812 R phenylalanyl-tRNA synthetase subunit alpha complement(1552718..1553812) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284068 YP_003688329.1 CDS PFREUD_14030 NC_014215.1 1553968 1554144 R hypothetical protein complement(1553968..1554144) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284067 YP_003688330.1 CDS spoU1 NC_014215.1 1554144 1555004 R rRNA methylase complement(1554144..1555004) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282720 YP_003688331.1 CDS rplT NC_014215.1 1555015 1555386 R 50S ribosomal protein L20 complement(1555015..1555386) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284292 YP_003688332.1 CDS rpmI NC_014215.1 1555432 1555626 R 50S ribosomal protein L35 complement(1555432..1555626) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284216 YP_003688333.1 CDS infC NC_014215.1 1555694 1556407 R translation initiation factor IF-3 complement(1555694..1556407) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284228 YP_003688334.1 CDS PFREUD_14080 NC_014215.1 1556453 1556614 R hypothetical protein complement(1556453..1556614) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283746 YP_003688335.1 CDS PFREUD_14090 NC_014215.1 1556728 1557210 D hypothetical protein 1556728..1557210 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282721 YP_003688336.1 CDS hisG NC_014215.1 1557274 1558137 R phosphoribosyl-ATP + Pyrophosphate <=> ATP + 5-phospho-alpha-D-ribose 1-diphosphate; ATP phosphoribosyltransferase complement(1557274..1558137) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282722 YP_003688337.1 CDS hisE NC_014215.1 1558204 1558470 R phosphoribosyl-ATP + H2O <=> phosphoribosyl-AMP + Pyrophosphate; phosphoribosyl-ATP pyrophosphohydrolase complement(1558204..1558470) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283706 YP_003688338.1 CDS PFREUD_14120 NC_014215.1 1558643 1560793 D FtsH is the only membrane-bound ATP-dependent protease universally conserved in prokaryotes. It only efficiently degrades proteins that have a low thermodynamic stability In Oenococcus oeni FtsH is involved in protection against environmental stress, and shows increased expression under heat or osmotic stress.; protein FtsH 1558643..1560793 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283704 YP_003688339.1 CDS cysS1 NC_014215.1 1560903 1562159 R ATP + L-cysteine + tRNA(Cys) <=> AMP + Pyrophosphate + L-Cysteinyl-tRNA(Cys); cysteinyl-tRNA synthetase complement(1560903..1562159) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282723 YP_003688340.1 CDS PFREUD_14140 NC_014215.1 1562226 1563215 D oxidoreductase 1562226..1563215 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283466 YP_003688341.1 CDS PFREUD_14150 NC_014215.1 1563233 1563484 R hypothetical protein complement(1563233..1563484) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282724 YP_003688342.1 CDS PFREUD_14170 NC_014215.1 1564163 1564327 D hypothetical protein 1564163..1564327 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282726 YP_003688343.1 CDS PFREUD_14180 NC_014215.1 1564389 1564709 D hypothetical protein 1564389..1564709 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282727 YP_003688344.1 CDS PFREUD_14190 NC_014215.1 1564756 1565253 D hypothetical protein 1564756..1565253 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282728 YP_003688345.1 CDS uppP NC_014215.1 1565768 1566604 D UDP diphosphate + H2O <=> UDP phosphate + Orthophosphate; UDP-diphosphatase 1565768..1566604 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282729 YP_003688346.1 CDS PFREUD_14210 NC_014215.1 1566675 1567061 R hypothetical protein complement(1566675..1567061) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284458 YP_003688347.1 CDS trpB2 NC_014215.1 1567064 1568554 R L-serine + Indoleglycerol phosphate <=> L-tryptophan + (2R)-2-Hydroxy-3-(phosphonooxy)-propanal + H2O. The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.; tryptophan synthase subunit beta complement(1567064..1568554) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282730 YP_003688348.1 CDS dprA NC_014215.1 1568547 1569707 R DNA mediated transformation; DNA processing / uptake protein complement(1568547..1569707) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284428 YP_003688349.1 CDS chlI NC_014215.1 1569704 1571218 R Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX; Magnesium chelatase, subunit ChlI complement(1569704..1571218) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283521 YP_003688350.1 CDS PFREUD_14250 NC_014215.1 1571239 1571601 R endonuclease complement(1571239..1571601) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283416 YP_003688351.1 CDS PFREUD_14260 NC_014215.1 1571755 1572069 R hypothetical protein complement(1571755..1572069) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282731 YP_003688352.1 CDS rnhB NC_014215.1 1572066 1572701 R Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. Endonucleolytic cleavage to 5-phosphomonoester. Manganese or magnesium as cofactor; ribonuclease HII complement(1572066..1572701) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282732 YP_003688353.1 CDS lepB NC_014215.1 1572707 1573456 R Cleavage of hydrophobic, N-terminal signal or leader sequences from secreted and periplasmic proteins.; Signal peptidase I complement(1572707..1573456) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284192 YP_003688354.1 CDS rplS NC_014215.1 1573543 1573899 R highly similar to SwissProt entry RL19_PROAC from Propionibacterium acnes; 50S ribosomal protein L19 complement(1573543..1573899) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283817 YP_003688355.1 CDS sdhB3 NC_014215.1 1574173 1574937 R succinate + acceptor <=> fumarate + reduced acceptor; succinate dehydrogenase complement(1574173..1574937) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284215 YP_003688356.1 CDS sdhA3 NC_014215.1 1574934 1576955 R succinate + FAD <=> FADH2 + Fumarate; succinate dehydrogenase flavoprotein subunit complement(1574934..1576955) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284268 YP_003688357.1 CDS sdhC2 NC_014215.1 1576952 1577695 R succinate + Acceptor <=> Fumarate + Reduced acceptor; succinate dehydrogenase cytochrome B-558 subunit complement(1576952..1577695) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284266 YP_003688358.1 CDS pf169 NC_014215.1 1577811 1578509 D recombinant protein active on 1- naphthyl actetate and 1- naphthyl propionate; carboxylic ester hydrolase 1577811..1578509 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284270 YP_003688359.1 CDS trmD NC_014215.1 1578517 1579311 R S-adenosyl-L-methionine + tRNA <=> S-adenosyl-L-homocysteine + tRNA containing N1-methylguanine; tRNA (guanine-N1-)-methyltransferase / S-adenosyl-L-methionine:tRNA (guanine-N1-)-methyltransferase complement(1578517..1579311) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284035 YP_003688360.1 CDS rimM NC_014215.1 1579308 1579859 R 16S rRNA processing protein complement(1579308..1579859) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284424 YP_003688361.1 CDS PFREUD_14360 NC_014215.1 1579868 1580122 R hypothetical protein complement(1579868..1580122) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284182 YP_003688362.1 CDS rpsP NC_014215.1 1580125 1580616 R 30S ribosomal protein S16 complement(1580125..1580616) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282733 YP_003688363.1 CDS PFREUD_14380 NC_014215.1 1580794 1581903 R metallo-dependent hydrolases, subgroup A complement(1580794..1581903) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284249 YP_003688364.1 CDS ffh NC_014215.1 1581917 1583488 R SRP, The signal recognition particle (SRP) mediates the transport to or across the plasma membrane. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).; GTP binding signal recognition particle protein complement(1581917..1583488) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282734 YP_003688365.1 CDS ftsY NC_014215.1 1583615 1584769 R signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins; Signal recognition particle receptor complement(1583615..1584769) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283554 YP_003688366.1 CDS PFREUD_14410 NC_014215.1 1584861 1585058 R hypothetical protein complement(1584861..1585058) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283584 YP_003688367.1 CDS smc NC_014215.1 1585140 1588685 R Plays an important role in chromosome structure and partitioning. Essential for chromosome partition; chromosome partition protein Smc complement(1585140..1588685) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282735 YP_003688368.1 CDS PFREUD_14430 NC_014215.1 1588723 1589337 R hypothetical protein complement(1588723..1589337) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284286 YP_003688369.1 CDS mutM3 NC_014215.1 1589349 1590254 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Hydrolysis of DNA containing ring-opened 7-methylguanine residues; formamidopyrimidine-DNA glycosylase complement(1589349..1590254) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282736 YP_003688371.1 CDS rnc NC_014215.1 1590254 1590976 R This is an endoribonuclease that cleaves double-stranded RNA molecules. The cleavage can be either a single-stranded nick or double-stranded break in the RNA, depending in part upon the degree of base-pairing in the region of the cleavage site; ribonuclease III complement(1590254..1590976) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282737 YP_003688372.1 CDS PFREUD_14470 NC_014215.1 1591326 1591886 R hypothetical protein complement(1591326..1591886) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284189 YP_003688373.1 CDS coaD NC_014215.1 1591974 1592459 R ATP + Pantetheine 4prime-phosphate <=> Pyrophosphate + Dephospho-CoA; phosphopantetheine adenylyltransferase complement(1591974..1592459) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282738 YP_003688374.1 CDS PFREUD_14490 NC_014215.1 1592452 1593051 R N6-adenine-specific methylase; methylase complement(1592452..1593051) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283430 YP_003688375.1 CDS PFREUD_14500 NC_014215.1 1593127 1593549 D hypothetical protein 1593127..1593549 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282739 YP_003688376.1 CDS recG NC_014215.1 1593656 1595863 R Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3prime to 5prime polarity. RecG unwind branched duplex DNA (Y-DNA); ATP-dependent DNA helicase RecG complement(1593656..1595863) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282740 YP_003688377.1 CDS rpmB NC_014215.1 1596065 1596250 R 50S ribosomal protein L28 complement(1596065..1596250) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284166 YP_003688378.1 CDS PFREUD_14530 NC_014215.1 1596385 1598070 R beta-lactamase-like:RNA-metabolising metallo-beta-lactamase complement(1596385..1598070) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284223 YP_003688379.1 CDS PFREUD_14540 NC_014215.1 1598182 1598712 D acetyltransferase 1598182..1598712 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282741 YP_003688380.1 CDS PFREUD_14550 NC_014215.1 1598725 1599420 R hypothetical protein complement(1598725..1599420) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282742 YP_003688381.1 CDS dapB NC_014215.1 1599456 1600196 R 2,3,4,5-Tetrahydrodipicolinate + NAD+ <=> L-2,3-dihydrodipicolinate + NADH + H+; dihydrodipicolinate reductase complement(1599456..1600196) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282743 YP_003688382.1 CDS pnpA NC_014215.1 1600401 1602611 R Induced by several stresses and by starvation.; polyribonucleotide nucleotidyltransferase complement(1600401..1602611) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283476 YP_003688383.1 CDS rpsO NC_014215.1 1602936 1603199 R 30S ribosomal protein S15 complement(1602936..1603199) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284087 YP_003688384.1 CDS ribF NC_014215.1 1603303 1604280 R ATP + FMN <=> Pyrophosphate + FAD / ATP + riboflavin <=> ADP + FMN; riboflavin biosynthesis protein complement(1603303..1604280) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284248 YP_003688385.1 CDS glpK NC_014215.1 1604606 1606132 R Key enzyme in the regulation of glycerol uptake and metabolism, glycerol utilization; first (rate-limiting) step, ATP + glycerol = ADP + sn-glycerol 3-phosphate; glycerol kinase complement(1604606..1606132) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284177 YP_003688386.1 CDS glpF NC_014215.1 1606190 1606981 R FUNCTION: glycerol enters the cell via the glycerol diffusion facilitator protein. This membrane protein facilitates the movement of glycerol across the cytoplasmic membrane (By similarity). # DOMAIN: Aquaporins contain two tandem repeats each containing three membrane-spanning domains and a pore-forming loop with the signature motif Asn-Pro-Ala (NPA).; glycerol uptake facilitator protein complement(1606190..1606981) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283632 YP_003688387.1 CDS truB NC_014215.1 1607226 1608122 R Uracil + D-ribose 5-phosphate <=> pseudouridine 5prime-phosphate + H2O; tRNA pseudouridine synthase B complement(1607226..1608122) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283631 YP_003688388.1 CDS rbfA NC_014215.1 1608119 1608559 R Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5 prime-terminal helix region of 16S rRNA; ribosome-binding factor A complement(1608119..1608559) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284434 YP_003688389.1 CDS infB NC_014215.1 1608559 1611480 R One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(1608559..1611480) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284159 YP_003688390.1 CDS PFREUD_14650 NC_014215.1 1611676 1611873 R hypothetical protein complement(1611676..1611873) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283745 YP_003688391.1 CDS nusA NC_014215.1 1612020 1613078 R transcription termination/ antitermination factor NusA complement(1612020..1613078) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282744 YP_003688392.1 CDS PFREUD_14670 NC_014215.1 1613080 1613553 R hypothetical protein complement(1613080..1613553) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283977 YP_003688393.1 CDS PFREUD_14680 NC_014215.1 1613823 1614809 D hypothetical protein 1613823..1614809 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282745 YP_003688394.1 CDS proS NC_014215.1 1614868 1616634 R prolyl-tRNA synthetase complement(1614868..1616634) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282746 YP_003688395.1 CDS PFREUD_14700 NC_014215.1 1616773 1617603 R acetyltransferase complement(1616773..1617603) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284121 YP_003688396.1 CDS ispG NC_014215.1 1617755 1618921 R 2-C-methyl-D-erythritol 2,4-cyclodiphosphate + protein dithiol <=> 1-Hydroxy-2-methyl-2-butenyl 4-diphosphate + H2O + protein disulfide; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(1617755..1618921) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282747 YP_003688397.1 CDS dxr NC_014215.1 1618994 1620169 R 2-C-methyl-D-erythritol 4-phosphate + NADP+ <=> 1-deoxy-D-xylulose 5-phosphate + NADPH + H+; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(1618994..1620169) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283796 YP_003688398.1 CDS PFREUD_14730 NC_014215.1 1620258 1621385 R hypothetical protein complement(1620258..1621385) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283529 YP_003688399.1 CDS cdsA NC_014215.1 1621391 1622236 R CTP + phosphatidate <=> Pyrophosphate + CDP-diacylglycerol; phosphatidate cytidylyltransferase complement(1621391..1622236) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282748 YP_003688400.1 CDS frr NC_014215.1 1622245 1622802 R ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation.; ribosome recycling factor complement(1622245..1622802) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283412 YP_003688401.1 CDS pyrH NC_014215.1 1622875 1623624 R uridylate kinase complement(1622875..1623624) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283576 YP_003688402.1 CDS tsf NC_014215.1 1623761 1624573 R elongation factor Ts complement(1623761..1624573) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284158 YP_003688403.1 CDS rpsB NC_014215.1 1624612 1625589 R 30S ribosomal protein S2 complement(1624612..1625589) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284442 YP_003688404.1 CDS PFREUD_14790 NC_014215.1 1625883 1627067 D hypothetical protein 1625883..1627067 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284236 YP_003688405.1 CDS xerC NC_014215.1 1627111 1628037 R Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids; integrase/recombinase complement(1627111..1628037) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282749 YP_003688406.1 CDS def NC_014215.1 1628186 1628806 D formyl-L-methionyl peptide + H2O <=> methionyl peptide + formate; polypeptide deformylase 1628186..1628806 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284477 YP_003688407.1 CDS spoU2 NC_014215.1 1628840 1629649 R Belongs to the RNA methyltransferase trmH family. RNA processing; tRNA/rRNA methyltransferase complement(1628840..1629649) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283486 YP_003688408.1 CDS PFREUD_14830 NC_014215.1 1629790 1630833 D transporter, sodium/bile acid symporter family 1629790..1630833 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284293 YP_003688409.1 CDS PPA1530 NC_014215.1 1630915 1631709 R ABC transporter ATP-binding protein complement(1630915..1631709) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282750 YP_003688410.1 CDS PFREUD_14850 NC_014215.1 1631862 1632611 D hypothetical protein 1631862..1632611 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284101 YP_003688411.1 CDS inhA NC_014215.1 1632686 1633459 R enoyl-ACP reductase (NADH) complement(1632686..1633459) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282751 YP_003688412.1 CDS fabG NC_014215.1 1633549 1634283 R (3R)-3-Hydroxyacyl-ACP + NADP+ <=> 3-Oxoacyl-ACP + NADPH + H+; 3-oxoacyl-ACP reductase complement(1633549..1634283) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283747 YP_003688413.1 CDS PFREUD_14880 NC_014215.1 1634353 1635099 D dehydrogenase 1634353..1635099 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283540 YP_003688414.1 CDS myrA NC_014215.1 1635107 1635940 D Confers strong resistance to mycinamicin (MM) and tylosin (TY).; resistance protein 1635107..1635940 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282752 YP_003688416.1 CDS PFREUD_14910 NC_014215.1 1636091 1637689 R ABC transporter ATP-binding protein complement(1636091..1637689) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282753 YP_003688417.1 CDS PFREUD_14920 NC_014215.1 1637963 1638412 R hypothetical protein complement(1637963..1638412) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282754 YP_003688418.1 CDS nifU1 NC_014215.1 1638409 1638861 R The nif genes are responsible for nitrogen fixation. However this domain is found in bacteria that do not fix nitrogen, so it may have a broader significance in the cell than nitrogen fixation.; Nitrogen-fixing NifU-like complement(1638409..1638861) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282755 YP_003688419.1 CDS sufS NC_014215.1 1638858 1640114 R cysteine desulfurase complement(1638858..1640114) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283951 YP_003688420.1 CDS sufC NC_014215.1 1640104 1640853 R The SUF system of Escherichia coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; ABC transporter ATPase complement(1640104..1640853) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284307 YP_003688421.1 CDS PFREUD_14960 NC_014215.1 1640858 1641205 R dioxygenase complement(1640858..1641205) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284305 YP_003688422.1 CDS sufD NC_014215.1 1641202 1642419 R FeS assembly protein SufD complement(1641202..1642419) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282756 YP_003688423.1 CDS sufB NC_014215.1 1642419 1643876 R FeS assembly protein SufB complement(1642419..1643876) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284306 YP_003688424.1 CDS arsR4 NC_014215.1 1643873 1644637 R ArsR family transcriptional regulator complement(1643873..1644637) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284304 YP_003688425.1 CDS PFREUD_15000 NC_014215.1 1644906 1645280 D transcriptional regulator 1644906..1645280 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283351 YP_003688426.1 CDS PFREUD_15010 NC_014215.1 1645277 1645975 D ABC transporter ATP-binding protein 1645277..1645975 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282757 YP_003688427.1 CDS PFREUD_15020 NC_014215.1 1645972 1646787 D hypothetical protein 1645972..1646787 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282758 YP_003688428.1 CDS pdxT NC_014215.1 1646939 1647559 R Molecular function: transferase activity, Biological process: glutamine catabolic process and pyridoxal phosphate biosynthetic process; glutamine amidotransferase subunit PdxT complement(1646939..1647559) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282759 YP_003688429.1 CDS pdxS NC_014215.1 1647564 1648454 R Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring. Cofactor biosynthesis, pyridoxal 5_phosphate biosynthesis-forms a complex with pdxT, induction by indole. Belongs to the pdxS/SNZ family; pyridoxal biosynthesis lyase PdxS complement(1647564..1648454) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284023 YP_003688430.1 CDS PFREUD_15050 NC_014215.1 1648550 1649980 D transcriptional regulator 1648550..1649980 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284022 YP_003688431.1 CDS zwf NC_014215.1 1650133 1651752 D D-glucose 6-phosphate + NADP+ <=> D-glucono-1,5-lactone 6-phosphate + NADPH + H+; glucose-6-phosphate 1-dehydrogenase 1650133..1651752 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282760 YP_003688432.1 CDS opcA NC_014215.1 1651763 1652665 D allosteric effector of glucose-6-phosphate dehydrogenase; glucose 6-phosphate dehydrogenase effector OpcA 1651763..1652665 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284494 YP_003688433.1 CDS devB NC_014215.1 1652677 1653420 D D-glucono-1,5-lactone 6-phosphate + H2O <=> 6-phospho-D-gluconate; 6-phosphogluconolactonase 1652677..1653420 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283982 YP_003688434.1 CDS PFREUD_15090 NC_014215.1 1653737 1654093 R electron transport protein complement(1653737..1654093) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283490 YP_003688435.1 CDS PFREUD_15100 NC_014215.1 1654166 1654411 R hypothetical protein complement(1654166..1654411) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282761 YP_003688436.1 CDS tpi1 NC_014215.1 1654549 1655337 R D-glyceraldehyde 3-phosphate = glycerone phosphate, homodimer; triosephosphate isomerase 1 complement(1654549..1655337) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282762 YP_003688437.1 CDS pgk NC_014215.1 1655340 1656551 R phosphoglycerate kinase complement(1655340..1656551) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284415 YP_003688438.1 CDS gap NC_014215.1 1656715 1657719 R D-glyceraldehyde-3-phosphate + phosphate + NAD+ = 1,3-diphosphateglycerate + NADH // D-Erythrose 4-phosphate + NAD+ + H2O <=> 4-phospho-D-erythronate + NADH + H+ et; glyceraldehyde-3-phosphate dehydrogenase complement(1656715..1657719) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284059 YP_003688439.1 CDS PFREUD_15140 NC_014215.1 1657833 1658405 R hypothetical protein complement(1657833..1658405) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283599 YP_003688440.1 CDS PFREUD_15150 NC_014215.1 1658372 1659211 R hypothetical protein complement(1658372..1659211) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282763 YP_003688441.1 CDS PFREUD_15170 NC_014215.1 1659997 1661034 R hypothetical protein complement(1659997..1661034) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282765 YP_003688442.1 CDS PFREUD_15180 NC_014215.1 1661024 1661992 R hypothetical protein complement(1661024..1661992) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282766 YP_003688443.1 CDS PFREUD_15190 NC_014215.1 1661989 1662873 R This family contains an ATP-binding site and could be an ATPase; ATPase complement(1661989..1662873) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282767 YP_003688444.1 CDS uvrC NC_014215.1 1663042 1665036 R excinuclease ABC subunit C complement(1663042..1665036) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282768 YP_003688445.1 CDS PFREUD_15210 NC_014215.1 1665156 1666523 D signal transduction histidine kinase 1665156..1666523 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284468 YP_003688446.1 CDS PFREUD_15220 NC_014215.1 1666498 1667151 D two-component response regulator 1666498..1667151 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282769 YP_003688447.1 CDS PFREUD_15230 NC_014215.1 1667254 1668135 D ABC transporter ATP-binding protein 1667254..1668135 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282770 YP_003688448.1 CDS PFREUD_15240 NC_014215.1 1668132 1669298 D sodium ABC transporter permease 1668132..1669298 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282771 YP_003688449.1 CDS PFREUD_15250 NC_014215.1 1669440 1669976 D acetyltransferase 1669440..1669976 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282772 YP_003688450.1 CDS uvrA3 NC_014215.1 1669991 1673047 R excinuclease ABC subunit A complement(1669991..1673047) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282773 YP_003688451.1 CDS PFREUD_15270 NC_014215.1 1673268 1674014 D hypothetical protein 1673268..1674014 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284465 YP_003688452.1 CDS PFREUD_15280 NC_014215.1 1674016 1674609 D beta-lactamase-like protein 1674016..1674609 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282774 YP_003688453.1 CDS terC NC_014215.1 1674644 1675678 R TerC has been implicated in resistance to tellurium. This protein may be involved in efflux of tellurium ions.s; membrane protein TerC complement(1674644..1675678) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282775 YP_003688454.1 CDS uvrB NC_014215.1 1675869 1677953 R excinuclease ABC subunit B complement(1675869..1677953) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284319 YP_003688455.1 CDS coaE NC_014215.1 1678028 1678696 R ATP + Dephospho-CoA <=> ADP + CoA; dephospho-CoA kinase complement(1678028..1678696) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284467 YP_003688456.1 CDS PFREUD_15320 NC_014215.1 1678700 1679476 R uridine phosphorylase complement(1678700..1679476) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283431 YP_003688457.1 CDS rpsA NC_014215.1 1679593 1681047 R 30S ribosomal protein S1 complement(1679593..1681047) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282776 YP_003688458.1 CDS gab NC_014215.1 1681410 1682876 R aldehyde dehydrogenase complement(1681410..1682876) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284235 YP_003688459.1 CDS PFREUD_15350 NC_014215.1 1683096 1683809 D hypothetical protein 1683096..1683809 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283589 YP_003688460.1 CDS polA NC_014215.1 1683829 1686507 R deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1).; DNA polymerase I complement(1683829..1686507) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282777 YP_003688461.1 CDS PFREUD_15370 NC_014215.1 1686614 1687237 R two-component system response regulator complement(1686614..1687237) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284091 YP_003688462.1 CDS pyk1 NC_014215.1 1687773 1689272 R ATP + pyruvate <=> ADP + phosphoenolpyruvate; pyruvate kinase 1 complement(1687773..1689272) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282779 YP_003688463.1 CDS rluA NC_014215.1 1689522 1690442 R RNA uridine = RNA pseudouridine.; pseudouridylate synthase complement(1689522..1690442) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284151 YP_003688464.1 CDS LspA NC_014215.1 1690439 1690984 R This protein specifically catalyzes the removal of signal peptides from prolipoproteins. Release of signal peptides from bacterial membrane prolipoproteins. Hydrolyzes -Xaa-Yaa-Zaa-|-(S,diacylglyceryl)Cys-, in which Xaa is hydrophobic (preferably Leu), and Yaa (Ala or Ser) and Zaa (Gly or Ala) have small, neutral side subunits.; lipoprotein signal peptidase complement(1690439..1690984) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284183 YP_003688465.1 CDS dskA NC_014215.1 1691041 1691469 R TraR/DksA family transcriptional regulator complement(1691041..1691469) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283837 YP_003688466.1 CDS PFREUD_15430 NC_014215.1 1691544 1692542 R hypothetical protein complement(1691544..1692542) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283525 YP_003688467.1 CDS PFREUD_15440 NC_014215.1 1692679 1692972 R hypothetical protein complement(1692679..1692972) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282780 YP_003688468.1 CDS PFREUD_15450 NC_014215.1 1692976 1693497 R hypothetical protein complement(1692976..1693497) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282781 YP_003688469.1 CDS PFREUD_15460 NC_014215.1 1693649 1694437 R hypothetical protein complement(1693649..1694437) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282782 YP_003688470.1 CDS ftsZ NC_014215.1 1694447 1695688 R The protein forms a ring at the leading edge of the cell division site; cell division protein FtsZ complement(1694447..1695688) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282783 YP_003688471.1 CDS ftsQ NC_014215.1 1695906 1696637 R FtsQ is one of several cell division proteins. FtsQ interacts with other Fts proteins. The precise function of FtsQ is unknown.; cell division protein FtsQ complement(1695906..1696637) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283585 YP_003688472.1 CDS murC NC_014215.1 1696634 1698076 R cell wall formation- ATP + UDP-N-acetylmuramate + L-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanine.; UDP-N-acetylmuramate--L-alanine ligase complement(1696634..1698076) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283580 YP_003688473.1 CDS murG NC_014215.1 1698073 1699173 R UDP-N-acetylglucosamine +Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)- diphosphoundecaprenol = UDP +GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D- Ala)-diphosphoundecaprenol; UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-UDP N-acetylglucosamine transferase complement(1698073..1699173) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283918 YP_003688474.1 CDS ftsW1 NC_014215.1 1699173 1700438 R cell division protein FtsW complement(1699173..1700438) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283922 YP_003688475.1 CDS murD NC_014215.1 1700631 1702115 R ATP + UDP-N-acetylmuramoyl-L-alanine + D-glutamate = ADP + phosphate; UDP-N-acetylmuramoylalanine--D-glutamate ligase complement(1700631..1702115) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283581 YP_003688476.1 CDS mraY NC_014215.1 1702112 1703188 R phospho-N-acetylmuramoyl-pentapeptide- transferase complement(1702112..1703188) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283919 YP_003688477.1 CDS murF NC_014215.1 1703185 1704717 R Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein. ATP + UDP-N-acetylmuramoyl-L-alanyl-gamma-D-glutamyl-L-lysine + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-gamma-D-glutamyl-L-lysyl-D- alanyl-D-alanine. Belongs to the murCDEF family.; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(1703185..1704717) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283907 YP_003688478.1 CDS murE NC_014215.1 1704671 1706260 R UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(1704671..1706260) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283921 YP_003688479.1 CDS ftsI NC_014215.1 1706260 1708134 R transpeptidase activity involved in the biosynthesis of septal peptidoglycan; cell division protein FtsI complement(1706260..1708134) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283920 YP_003688480.1 CDS PFREUD_15570 NC_014215.1 1708320 1708838 R hypothetical protein complement(1708320..1708838) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283578 YP_003688481.1 CDS mraW NC_014215.1 1708835 1709863 R S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; S-adenosyl-L-methionine-dependent methyltransferase mraW complement(1708835..1709863) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282784 YP_003688482.1 CDS mraZ NC_014215.1 1710042 1710479 R belongs to the mra (murein region A) gene cluster, involved in cell wall biosynthesis and cell division; protein mraZ complement(1710042..1710479) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283906 YP_003688484.1 CDS PFREUD_15610 NC_014215.1 1710702 1711085 R hypothetical protein complement(1710702..1711085) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282785 YP_003688485.1 CDS dinP NC_014215.1 1711125 1712357 R Catalyses DNA-template-directed extension of the 3prime- end of a DNA strand by one nucleotide at a time. Cannot initiate a subunit de novo. Requires a primer, which may be DNA or RNA.; DNA-directed DNA polymerase complement(1711125..1712357) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282786 YP_003688487.1 CDS dnaE2 NC_014215.1 1712393 1715938 R DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1).; DNA polymerase III subunit alpha complement(1712393..1715938) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282787 YP_003688488.1 CDS PFREUD_15650 NC_014215.1 1716025 1716426 R hypothetical protein complement(1716025..1716426) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283510 YP_003688489.1 CDS PFREUD_15660 NC_014215.1 1716640 1718850 D ATP-dependent DNA helicase activity; Helicase protein 1716640..1718850 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282788 YP_003688490.1 CDS metF NC_014215.1 1718804 1719745 R 5-methyltetrahydrofolate + NAD(P)+ = 5,10-methylenetetrahydrofolate + NAD(P)H.; 5,10-methylenetetrahydrofolate reductase complement(1718804..1719745) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282789 YP_003688491.1 CDS PFREUD_15680 NC_014215.1 1719785 1720861 D trans,trans-farnesyl diphosphate + isopentenyl diphosphate <=> diphosphate + geranylgeranyl diphosphate Some forms of this enzyme will also use geranyl diphosphate and dimethylallyl diphosphate as donors; farnesyltranstransferase/geranylgeranyl pyrophosphate synthase 1719785..1720861 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283878 YP_003688492.1 CDS PFREUD_15690 NC_014215.1 1721012 1723255 D hypothetical protein 1721012..1723255 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282790 YP_003688493.1 CDS PFREUD_15700 NC_014215.1 1723298 1724221 D hypothetical protein 1723298..1724221 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282791 YP_003688494.1 CDS PFREUD_15710 NC_014215.1 1724234 1724890 R Zn-dependent hydrolase, beta-lactamase fold complement(1724234..1724890) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282792 YP_003688495.1 CDS aroH NC_014215.1 1725008 1726393 R phosphoenolpyruvate + D-Erythrose 4-phosphate + H2O <=> 2-Dehydro-3-deoxy-D-arabino-heptonate 7-phosphate + Orthophosphate; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1725008..1726393) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282793 YP_003688496.1 CDS pls NC_014215.1 1726505 1727455 R phosphatidate + CoA <=> 1-acyl-sn-glycerol 3-phosphate + acyl-CoA and 2,3-Dehydroacyl-CoA + 1-acyl-sn-glycerol 3-phosphate <=> CoA + phosphatidate and acyl-CoA + 1-Alkyl-sn-glycero-3-phosphate <=> CoA + 2-acyl-1-alkyl-sn-glycero-3-phosphate; 1-acylglycerol-3-phosphate O-acyltransferase complement(1726505..1727455) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283343 YP_003688497.1 CDS plsC3 NC_014215.1 1727439 1728284 R smart00563, phosphate acyltransferases; Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities.; acyltransferase complement(1727439..1728284) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284080 YP_003688498.1 CDS PFREUD_15750 NC_014215.1 1728401 1729522 R membrane proteins related to metalloendopeptidases; peptidase M23B complement(1728401..1729522) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284083 YP_003688499.1 CDS PFREUD_15760 NC_014215.1 1729782 1730051 D AsnC family transcriptional regulator 1729782..1730051 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282794 YP_003688500.1 CDS ppiA NC_014215.1 1730182 1730694 R PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides, Belongs to the cyclophilin-type PPIase family.; peptidyl-prolyl cis-trans isomerase A complement(1730182..1730694) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282795 YP_003688501.1 CDS PFREUD_15780 NC_014215.1 1731021 1732037 D hypothetical protein 1731021..1732037 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284109 YP_003688502.1 CDS rimL NC_014215.1 1732226 1733323 D acetyltransferases, including N-acetylases of ribosomal proteins; acetyltransferase 1732226..1733323 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282796 YP_003688503.1 CDS PFREUD_15800 NC_014215.1 1733415 1734083 D hypothetical protein 1733415..1734083 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284181 YP_003688504.1 CDS PFREUD_15810 NC_014215.1 1734109 1734792 D hypothetical protein 1734109..1734792 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282797 YP_003688505.1 CDS PFREUD_15820 NC_014215.1 1734932 1735357 D hypothetical protein 1734932..1735357 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282798 YP_003688506.1 CDS trpD NC_014215.1 1735398 1736447 R N-(5-phospho-D-ribosyl)anthranilate + Pyrophosphate <=> Anthranilate + 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(1735398..1736447) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282799 YP_003688507.1 CDS PFREUD_15840 NC_014215.1 1736447 1736971 R Response regulator receiver protein complement(1736447..1736971) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284430 YP_003688508.1 CDS guaB3 NC_014215.1 1737184 1738647 D IMP + NAD+ + H2O <=> Xanthosine 5prime-phosphate + NADH + H+; inosine-5'-monophosphate dehydrogenase 1737184..1738647 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282800 YP_003688509.1 CDS PFREUD_15860 NC_014215.1 1738786 1739136 R HesB. may be involved in nitrogen fixation; the hesB gene is expressed only under nitrogen fixation conditions. Other members of this family include various hypothetical proteins of which some also contain NifU-like domains pfam01106 which is also involved in nitrogen fixation. In the gram-negative soil bacterium Rhizobium etli, the hesB-like gene iscN is required for nitrogen fixation.; HesB protein complement(1738786..1739136) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283677 YP_003688510.1 CDS PFREUD_15870 NC_014215.1 1739294 1740226 R hypothetical protein complement(1739294..1740226) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282801 YP_003688511.1 CDS PFREUD_15880 NC_014215.1 1740230 1740520 R hypothetical protein complement(1740230..1740520) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282802 YP_003688512.1 CDS pspA NC_014215.1 1740517 1741311 R Repressor of p54 sigma factor. t has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator.; phage shock protein A complement(1740517..1741311) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282803 YP_003688514.1 CDS PFREUD_15910 NC_014215.1 1741611 1742165 D hypothetical protein 1741611..1742165 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282804 YP_003688515.1 CDS PFREUD_15920 NC_014215.1 1742165 1742380 D hypothetical protein 1742165..1742380 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282805 YP_003688516.1 CDS gcvT1 NC_014215.1 1742535 1743692 R S-aminomethyldihydrolipoylprotein + Tetrahydrofolate <=> dihydrolipoylprotein + 5,10-methylenetetrahydrofolate + NH3; glycine cleavage system protein T complement(1742535..1743692) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282806 YP_003688517.1 CDS pdhB NC_014215.1 1743957 1745726 D Succinyl-CoA + Enzyme N6-(dihydrolipoyl)lysine <=> CoA + [dihydrolipoyllysine-residue succinyltransferase]S-succinyldihydrolipoyllysine , glutaryl-CoA + dihydrolipoamide <=> CoA + S-glutaryldihydrolipoamide; dihydrolipoamide acyltransferase 1743957..1745726 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283606 YP_003688518.1 CDS PFREUD_15950 NC_014215.1 1746010 1746780 D hypothetical protein 1746010..1746780 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284006 YP_003688519.1 CDS PFREUD_15960 NC_014215.1 1746813 1748624 D ABC transporter 1746813..1748624 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282807 YP_003688520.1 CDS PFREUD_15970 NC_014215.1 1748800 1750239 D glutamate metabolism : ATP + L-glutamate + NH3 <=> ADP + Orthophosphate + L-glutamine , peptidoglycan biosynthesis; glutamine synthetase 1748800..1750239 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282808 YP_003688521.1 CDS PFREUD_15980 NC_014215.1 1750532 1751074 D hypothetical protein 1750532..1751074 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282809 YP_003688522.1 CDS PFREUD_15990 NC_014215.1 1751165 1751749 D Biological process: regulation of transcription, DNA-dependent , response to antibiotic; TetR family transcriptional regulator 1751165..1751749 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282810 YP_003688523.1 CDS PFREUD_16000 NC_014215.1 1751769 1752584 R Short-subunit dehydrogenases of various substrate specificities; dehydrogenase complement(1751769..1752584) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282811 YP_003688524.1 CDS glnE NC_014215.1 1752581 1755547 R ATP + [L-glutamate:ammonia ligase (ADP-forming)] <=> Pyrophosphate + adenylyl-[L-glutamate:ammonia ligase (ADP-forming)]; glutamate-ammonia-ligase adenylyltransferase complement(1752581..1755547) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282812 YP_003688525.1 CDS PFREUD_16020 NC_014215.1 1755789 1756526 D hypothetical protein 1755789..1756526 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283624 YP_003688526.1 CDS glnA NC_014215.1 1756582 1757916 R # ATP + L-glutamate + NH3 <=> ADP + Orthophosphate + L-glutamine; glutamine synthetase complement(1756582..1757916) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282813 YP_003688527.1 CDS PFREUD_16040 NC_014215.1 1758123 1759004 D hypothetical protein 1758123..1759004 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283622 YP_003688528.1 CDS PFREUD_16050 NC_014215.1 1759089 1760036 D hypothetical protein 1759089..1760036 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282814 YP_003688529.1 CDS map NC_014215.1 1760116 1761024 D Removes the amino-terminal methionine from nascent proteins. Release of N-terminal amino acids, preferentially methionine, from peptides and arylamides. Binds 2 cobalt ions per subunit. Belongs to the peptidase M24A family; methionine aminopeptidase 1760116..1761024 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282815 YP_003688530.1 CDS PFREUD_16070 NC_014215.1 1761163 1762008 R hypothetical protein complement(1761163..1762008) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283856 YP_003688531.1 CDS PFREUD_16080 NC_014215.1 1762599 1763342 R hypothetical protein complement(1762599..1763342) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282816 YP_003688532.1 CDS pepP NC_014215.1 1763524 1764969 D Release of any N-terminal amino acid, including proline, that is linked to proline, even from a dipeptide or tripeptide. Binds 2 manganese ions per subunit.Belongs to the peptidase M24B family; Xaa-Pro aminopeptidase 1763524..1764969 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282817 YP_003688533.1 CDS PFREUD_16100 NC_014215.1 1765096 1765962 R hypothetical protein complement(1765096..1765962) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284030 YP_003688534.1 CDS citE NC_014215.1 1766107 1766970 R Citrate <=> acetate + Oxaloacetate / (3S)-Citryl-CoA <=> acetyl-CoA + Oxaloacetate; citrate lyase subunit beta complement(1766107..1766970) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282818 YP_003688535.1 CDS mgtE NC_014215.1 1767139 1768428 D magnesium (Mg2+) transporter 1767139..1768428 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283418 YP_003688536.1 CDS PFREUD_16130 NC_014215.1 1768425 1768988 D hypothetical protein 1768425..1768988 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283884 YP_003688537.1 CDS PF47 NC_014215.1 1769132 1770289 D proteins of the Mrp family are involved in stress adaptation; protein mrp (ATP-binding protein) 1769132..1770289 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282819 YP_003688538.1 CDS tatB NC_014215.1 1770456 1770905 R Sec-independent protein translocase protein TatB complement(1770456..1770905) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284050 YP_003688539.1 CDS dapA NC_014215.1 1771000 1771845 R L-aspartate 4-semialdehyde + pyruvate <=> L-2,3-dihydrodipicolinate + 2 H2O; dihydrodipicolinate synthase complement(1771000..1771845) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284315 YP_003688540.1 CDS PFREUD_16170 NC_014215.1 1772025 1772690 D pfam01596, methyltransf_3, O-methyltransferase. Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase caffeoyl-CoA O-methyltransferase and a family of bacterial O-methyltransferases that may be involved in antibiotic production.; methyltransferase 1772025..1772690 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283475 YP_003688541.1 CDS glgC NC_014215.1 1772828 1774075 R ATP + D-glucose 1-phosphate <=> Pyrophosphate + ADP-glucose; glucose-1-phosphate adenylyltransferase complement(1772828..1774075) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282820 YP_003688542.1 CDS glgA NC_014215.1 1774173 1775390 D ADP-glucose:1,4-alpha-D-glucan 4-alpha-D-glucosyltransferase; glycosyltransferase 1774173..1775390 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283614 YP_003688543.1 CDS PFREUD_16200 NC_014215.1 1775569 1775736 R hypothetical protein complement(1775569..1775736) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283612 YP_003688544.1 CDS PFREUD_16210 NC_014215.1 1775796 1776188 R hypothetical protein complement(1775796..1776188) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282821 YP_003688545.1 CDS PFREUD_16220 NC_014215.1 1776211 1777659 R chloride channel complement(1776211..1777659) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282822 YP_003688546.1 CDS PFREUD_16230 NC_014215.1 1777751 1778593 R Possible lysine decarboxylase. The members of this family share a highly conserved motif PGGXGTXXE that is probably functionally important. This family includes proteins annotated as lysine decarboxylases, although the evidence for this is not clear; lysine decarboxylase complement(1777751..1778593) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282823 YP_003688547.1 CDS dapE2 NC_014215.1 1778749 1779837 R N-Succinyl-LL-2,6-diaminoheptanedioate + H2O <=> succinate + LL-2,6-diaminoheptanedioate; succinyl-diaminopimelate desuccinylase complement(1778749..1779837) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282824 YP_003688548.1 CDS dapD NC_014215.1 1779937 1780875 D Succinyl-CoA + 2,3,4,5-Tetrahydrodipicolinate + H2O <=> CoA + N-Succinyl-2-L-amino-6-oxoheptanedioate; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 1779937..1780875 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283479 YP_003688549.1 CDS PFREUD_16260 NC_014215.1 1780882 1781727 D hypothetical protein 1780882..1781727 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283477 YP_003688550.1 CDS PFREUD_16270 NC_014215.1 1781755 1782846 R Molecular function: transaminase activity; aminotransferase complement(1781755..1782846) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282825 YP_003688551.1 CDS fdxA NC_014215.1 1782843 1783163 R Ferredoxin complement(1782843..1783163) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282826 YP_003688552.1 CDS gya NC_014215.1 1783399 1784367 D glycolate + NAD+ = glyoxylate + NADH. _ glycolate + NAD+ <=> Glyoxylate + NADH + H+; glyoxylate reductase 1783399..1784367 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283545 YP_003688553.1 CDS fumC NC_014215.1 1784531 1785955 D (S)-Malate <=> Fumarate + H2O; fumarate hydratase class II 1784531..1785955 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283679 YP_003688554.1 CDS PFREUD_16310 NC_014215.1 1786119 1786565 D hypothetical protein 1786119..1786565 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283586 YP_003688555.1 CDS aspA1 NC_014215.1 1786693 1788162 D L-aspartate = fumarate + NH3.; aspartate ammonia-lyase 1786693..1788162 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282827 YP_003688556.1 CDS aspA2 NC_014215.1 1788489 1789961 D L-aspartate <=> Fumarate + NH3; aspartate ammonia-lyase 1788489..1789961 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283360 YP_003688557.1 CDS dcuA NC_014215.1 1789966 1791261 D C4-dicarboxylate transporter 1789966..1791261 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283361 YP_003688558.1 CDS int NC_014215.1 1791363 1792166 R integrase complement(1791363..1792166) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283483 YP_003688559.1 CDS tnpA NC_014215.1 1792229 1792513 R transposase IS3/IS911 complement(1792229..1792513) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283772 YP_003688560.1 CDS pimH NC_014215.1 1792609 1793946 R Bacterial protein of unknown function (DUF894). This family consists of several bacterial proteins, many of which are annotated as putative transmembrane transport proteins.; Integral membrane efflux protein complement(1792609..1793946) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284375 YP_003688561.1 CDS PFREUD_16360 NC_014215.1 1793943 1794488 R Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor MarR. A large number of compounds induce transcription of mar operon, due to the compound binding to MarR and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds.; MarR family transcriptional regulator complement(1793943..1794488) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284074 YP_003688562.1 CDS PFREUD_16370 NC_014215.1 1794629 1795141 D acetyltransferase 1794629..1795141 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282828 YP_003688563.1 CDS gpt NC_014215.1 1795201 1795707 D purine phosphoribosyltransferase 1795201..1795707 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282829 YP_003688564.1 CDS cpsA2 NC_014215.1 1795793 1797052 R J. Bacteriol. 177:5561-5566(1995).; carboxypeptidase complement(1795793..1797052) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283658 YP_003688565.1 CDS PFREUD_16400 NC_014215.1 1797123 1798286 D hypothetical protein 1797123..1798286 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283446 YP_003688566.1 CDS PFREUD_16410 NC_014215.1 1798377 1799423 R diacylglycerol kinase, catalytic region complement(1798377..1799423) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282830 YP_003688567.1 CDS cys2 NC_014215.1 1799877 1800845 D formation of cysteine from O-acetyl-serine and hydrogen sulfide. O3-acetyl-L-serine + H2S = L-cysteine + acetate.; cysteine synthase 1799877..1800845 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282831 YP_003688568.1 CDS PFREUD_16430 NC_014215.1 1801065 1802033 D hypothetical protein 1801065..1802033 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283459 YP_003688569.1 CDS cynX NC_014215.1 1802318 1803595 R cyanate MSF transporter complement(1802318..1803595) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282832 YP_003688570.1 CDS PFREUD_16450 NC_014215.1 1803743 1804642 R glycine/betaine ABC transporter complement(1803743..1804642) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283456 YP_003688571.1 CDS PFREUD_16460 NC_014215.1 1804680 1805393 R hypothetical protein complement(1804680..1805393) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282833 YP_003688572.1 CDS ubiG NC_014215.1 1805494 1806387 D S-adenosyl-L-methionine + 3-demethylubiquinone-9 <=> S-adenosyl-L-homocysteine + ubiquinone-9; 3-demethylubiquinone-9 3-methyltransferase 1805494..1806387 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282834 YP_003688573.1 CDS PFREUD_16480 NC_014215.1 1806589 1808358 D major facilitator superfamily protein 1806589..1808358 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284449 YP_003688574.1 CDS glxK/garK NC_014215.1 1808422 1809540 R ATP + D-glycerate <=> ADP + 3-phospho-D-glycerate; glycerate kinase complement(1808422..1809540) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282835 YP_003688575.1 CDS cstA NC_014215.1 1809913 1812309 D peptide utilization during carbon starvation. Molecular and functional characterization of a carbon starvation gene of Escherichia coli. (J. Mol. Biol. 218:129-140(1991)); carbon starvation protein 1809913..1812309 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283642 YP_003688576.1 CDS PFREUD_16510 NC_014215.1 1812299 1812514 D hypothetical protein 1812299..1812514 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283450 YP_003688577.1 CDS lysR1 NC_014215.1 1812518 1813438 R LysR family transcriptional regulator complement(1812518..1813438) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282836 YP_003688578.1 CDS PFREUD_16530 NC_014215.1 1813508 1814590 D hypothetical protein 1813508..1814590 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283843 YP_003688579.1 CDS moe NC_014215.1 1814639 1815880 R Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family.; UBA/THIF-type NAD/FAD binding protein complement(1814639..1815880) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282837 YP_003688580.1 CDS thiG NC_014215.1 1815877 1816707 R ThiG, Thiazole biosynthesis protein ThiG. This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG , together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway; thiazole biosynthesis protein complement(1815877..1816707) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283900 YP_003688581.1 CDS thiS NC_014215.1 1816710 1816943 R ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.; thiamine biosynthesis protein complement(1816710..1816943) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284333 YP_003688582.1 CDS dadA1 NC_014215.1 1816940 1818193 R DadA, glycine/D-amino acid oxidases complement(1816940..1818193) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284336 YP_003688583.1 CDS thiE2 NC_014215.1 1818369 1819016 D 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-methyl-5-(2-phosphoethyl)-thiazole <=> Pyrophosphate + Thiamin monophosphate; thiamine-phosphate pyrophosphorylase 1818369..1819016 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283473 YP_003688584.1 CDS PFREUD_16590 NC_014215.1 1819531 1819704 D hypothetical protein 1819531..1819704 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284332 YP_003688585.1 CDS PFREUD_16600 NC_014215.1 1819701 1820864 D hypothetical protein 1819701..1820864 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282838 YP_003688586.1 CDS PFREUD_16610 NC_014215.1 1820947 1821990 R ACR3, arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism].; arsenite efflux pump permease complement(1820947..1821990) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282839 YP_003688588.1 CDS PFREUD_16640 NC_014215.1 1822551 1822625 D hypothetical protein 1822551..1822625 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282842 YP_003688589.1 CDS tnpA NC_014215.1 1822592 1823899 D transposase 1822592..1823899 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282843 YP_003688590.1 CDS int NC_014215.1 1824308 1825216 R integrase complement(1824308..1825216) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282844 YP_003688591.1 CDS tnpC NC_014215.1 1825213 1825518 R transposase IS3/IS911 complement(1825213..1825518) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283773 YP_003688592.1 CDS PFREUD_16670 NC_014215.1 1826611 1828143 D acylglycerone phosphate + Long-subunit alcohol <=> O-Alkylglycerone phosphate + Long-subunit acid anion; alkylglycerone-phosphate synthase 1826611..1828143 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283630 YP_003688593.1 CDS PFREUD_16680 NC_014215.1 1828232 1828891 D In the presence of glycerol 3-phosphate, this protein is thought to enhance transcription; transcriptional regulator 1828232..1828891 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282845 YP_003688594.1 CDS PFREUD_16690 NC_014215.1 1828864 1829124 D hypothetical protein 1828864..1829124 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282846 YP_003688595.1 CDS tnpA NC_014215.1 1829229 1830338 R transposase complement(1829229..1830338) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282847 YP_003688596.1 CDS PFREUD_16700 NC_014215.1 1830378 1830836 D hypothetical protein 1830378..1830836 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284377 YP_003688597.1 CDS dld NC_014215.1 1830990 1832705 D (R)-Lactate + NAD+ <=> pyruvate + NADH + H+; d-lactate dehydrogenase 1830990..1832705 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282848 YP_003688598.1 CDS PFREUD_24800 NC_014215.1 1833079 1833699 D transposase for IS3514b 1833079..1833699 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283503 YP_003688599.1 CDS PFREUD_24820 NC_014215.1 1833845 1834141 R transposase complement(1833845..1834141) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283281 YP_003688600.1 CDS int NC_014215.1 1834164 1835363 R integrase complement(1834164..1835363) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283282 YP_003688601.1 CDS tnp NC_014215.1 1835305 1836327 R transposase complement(1835305..1836327) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283774 YP_003688602.1 CDS tnpD NC_014215.1 1836327 1836638 R transposase IS3/IS911 complement(1836327..1836638) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284349 YP_003688603.1 CDS PFREUD_16720 NC_014215.1 1836899 1837945 D hypothetical protein 1836899..1837945 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284410 YP_003688604.1 CDS PFREUD_16730 NC_014215.1 1837949 1838383 R Molecular function: transcription factor activity, Biological process: regulation of transcription, DNA-dependent; excisionase complement(1837949..1838383) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282849 YP_003688605.1 CDS PFREUD_16740 NC_014215.1 1838663 1838884 R hypothetical protein complement(1838663..1838884) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282850 YP_003688606.1 CDS tnpA NC_014215.1 1838930 1839829 D transposase 1838930..1839829 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282851 YP_003688608.1 CDS frnE NC_014215.1 1839962 1840657 R protein-disulfide isomerase complement(1839962..1840657) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282852 YP_003688609.1 CDS PFREUD_16770 NC_014215.1 1840657 1840860 R hypothetical protein complement(1840657..1840860) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283575 YP_003688610.1 CDS PFREUD_16780 NC_014215.1 1841064 1842302 R major facilitator super family protein complement(1841064..1842302) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282853 YP_003688611.1 CDS lysR2 NC_014215.1 1842373 1843338 D LysR family transcriptional regulator 1842373..1843338 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282854 YP_003688612.1 CDS PFREUD_16800 NC_014215.1 1843302 1844072 R hypothetical protein complement(1843302..1844072) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283844 YP_003688613.1 CDS PFREUD_16810 NC_014215.1 1843723 1843806 D hypothetical protein 1843723..1843806 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282855 YP_003688615.1 CDS PFREUD_16830 NC_014215.1 1844166 1845275 R hypothetical protein complement(1844166..1845275) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282857 YP_003688616.1 CDS PFREUD_16840 NC_014215.1 1845275 1845499 R hypothetical protein complement(1845275..1845499) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282858 YP_003688617.1 CDS PFREUD_16850 NC_014215.1 1845605 1845964 D hypothetical protein 1845605..1845964 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282859 YP_003688618.1 CDS PFREUD_16860 NC_014215.1 1846287 1846844 R hypothetical protein complement(1846287..1846844) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282860 YP_003688619.1 CDS PFREUD_16870 NC_014215.1 1847067 1847318 D hypothetical protein 1847067..1847318 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282861 YP_003688620.1 CDS PFREUD_16880 NC_014215.1 1847423 1847980 D hypothetical protein 1847423..1847980 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282862 YP_003688621.1 CDS PFREUD_16890 NC_014215.1 1847986 1848849 D peptidase 1847986..1848849 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282863 YP_003688622.1 CDS PFREUD_16900 NC_014215.1 1848865 1848951 D hypothetical protein 1848865..1848951 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282864 YP_003688623.1 CDS PFREUD_16910 NC_014215.1 1848955 1849473 R hypothetical protein complement(1848955..1849473) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282865 YP_003688624.1 CDS PFREUD_16920 NC_014215.1 1849626 1851452 R hypothetical protein complement(1849626..1851452) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282866 YP_003688625.1 CDS ychF NC_014215.1 1851554 1852645 R GTPase YchF complement(1851554..1852645) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282867 YP_003688626.1 CDS apeB NC_014215.1 1852740 1854002 R aminopeptidase complement(1852740..1854002) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284487 YP_003688627.1 CDS rmuC NC_014215.1 1854161 1855510 D RmuC family. This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures; DNA recombination protein 1854161..1855510 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283315 YP_003688628.1 CDS PFREUD_16960 NC_014215.1 1855293 1855817 D No TM domain, no signal peptide; hypothetical protein 1855293..1855817 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284188 YP_003688629.1 CDS ispH NC_014215.1 1855442 1856431 R 1-Hydroxy-2-methyl-2-butenyl 4-diphosphate + NADPH + H+ <=> Isopentenyl diphosphate + NADP+ + H2O / Dimethylallyl diphosphate + NADP+ + H2O <=> 1-Hydroxy-2-methyl-2-butenyl 4-diphosphate + NADPH + H+; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(1855442..1856431) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282868 YP_003688630.1 CDS xseA NC_014215.1 1856475 1857848 D Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides. Exonucleolytic cleavage in either 5 prime- to 3 prime- or 3 prime- to 5 prime-direction to yield nucleoside 5 prime-phosphates.Heterooligomer composed of large and small subunits; exodeoxyribonuclease VII large subunit 1856475..1857848 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283797 YP_003688631.1 CDS xseB NC_014215.1 1857896 1858138 D Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides. Exonucleolytic cleavage in either 5 prime- to 3 prime- or 3 prime- to 5 prime-direction to yield nucleoside 5 prime-phosphates.Heterooligomer composed of large and small subunits; exodeoxyribonuclease 7 small subunit 1857896..1858138 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284479 YP_003688632.1 CDS PFREUD_17000 NC_014215.1 1858183 1858920 R hypothetical protein complement(1858183..1858920) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284480 YP_003688633.1 CDS uppS NC_014215.1 1859119 1859928 D trans,trans,cis-Geranylgeranyl diphosphate + 7 Isopentenyl diphosphate <=> di-trans,poly-cis-UDP diphosphate + 7 Pyrophosphate and di-trans,poly-cis-Decaprenyl diphosphate + Isopentenyl diphosphate <=> Pyrophosphate + di-trans,poly-cis-UDP diphosphate; UDP pyrophosphate synthase 1859119..1859928 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282869 YP_003688634.1 CDS PFREUD_17020 NC_014215.1 1859941 1860459 R hypothetical protein complement(1859941..1860459) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284459 YP_003688635.1 CDS PPA0563 NC_014215.1 1860497 1863181 R thioredoxin complement(1860497..1863181) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282870 YP_003688636.1 CDS PFREUD_17040 NC_014215.1 1863354 1864280 R LMBE-related protein complement(1863354..1864280) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284095 YP_003688637.1 CDS greA NC_014215.1 1864375 1864878 D Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases, resulting in locked ternary complexes. Cleavage of the nascent transcript by greA or greB allows the resumption of elongation from the new 3primeterminus.; transcription elongation factor GreA 1864375..1864878 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282871 YP_003688638.1 CDS PFREUD_17060 NC_014215.1 1864965 1865417 D hypothetical protein 1864965..1865417 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283659 YP_003688639.1 CDS PFREUD_17070 NC_014215.1 1865533 1866495 R hypothetical protein complement(1865533..1866495) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282872 YP_003688640.1 CDS PFREUD_17080 NC_014215.1 1866581 1868011 R hypothetical protein complement(1866581..1868011) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282873 YP_003688641.1 CDS ung NC_014215.1 1868192 1868881 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 1868192..1868881 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282874 YP_003688642.1 CDS msrA NC_014215.1 1868993 1869628 D peptide-L-methionine + Oxidized thioredoxin + H2O <=> peptide-L-methionine (S)-S-oxide + thioredoxin and L-methionine + Oxidized thioredoxin + H2O <=> L-methionine (S)-S-oxide + thioredoxin; peptide-methionine (S)-S-oxide reductase 1868993..1869628 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284456 YP_003688643.1 CDS PFREUD_17110 NC_014215.1 1869748 1870278 D hypothetical protein 1869748..1870278 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283913 YP_003688644.1 CDS PFREUD_17120 NC_014215.1 1870383 1871030 R hypothetical protein complement(1870383..1871030) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282875 YP_003688645.1 CDS PFREUD_17130 NC_014215.1 1871208 1871822 D Hydrolase 1871208..1871822 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282876 YP_003688646.1 CDS PFREUD_17140 NC_014215.1 1871819 1872325 D hypothetical protein 1871819..1872325 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282877 YP_003688647.1 CDS PFREUD_17150 NC_014215.1 1872351 1872806 R hypothetical protein complement(1872351..1872806) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282878 YP_003688648.1 CDS PFREUD_17160 NC_014215.1 1872940 1873344 R hypothetical protein complement(1872940..1873344) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282879 YP_003688649.1 CDS PFREUD_17170 NC_014215.1 1873357 1873446 R hypothetical protein complement(1873357..1873446) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282880 YP_003688650.1 CDS mpg NC_014215.1 1873474 1874124 R methylpurine-DNA glycosylase is a base excision-repair protein. It is responsible for the hydrolysis of the deoxyribose N-glycosidic bond, excising 3-methyladenine and 3-methylguanine from damaged DNA.; 3-methyladenine DNA glycosylase complement(1873474..1874124) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282881 YP_003688651.1 CDS PFREUD_17190 NC_014215.1 1874333 1875283 D hypothetical protein 1874333..1875283 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283905 YP_003688652.1 CDS PFREUD_17200 NC_014215.1 1875332 1876036 D NUDIX hydrolase 1875332..1876036 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282882 YP_003688653.1 CDS PFREUD_17210 NC_014215.1 1876211 1877023 R hypothetical protein complement(1876211..1877023) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282883 YP_003688654.1 CDS PFREUD_17220 NC_014215.1 1877160 1877909 R methyltransferase complement(1877160..1877909) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282884 YP_003688655.1 CDS PFREUD_17230 NC_014215.1 1878212 1878985 D nucleoside-diphosphate-sugar epimerase 1878212..1878985 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282885 YP_003688656.1 CDS PFREUD_17240 NC_014215.1 1879202 1880665 D amino acid ABC transporter permease 1879202..1880665 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282886 YP_003688657.1 CDS eno2 NC_014215.1 1880723 1881994 R 2-phospho-D-glycerate = phosphoenolpyruvate + H2O, homodimer, cofactor : magnesium; enolase complement(1880723..1881994) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282887 YP_003688658.1 CDS PFREUD_17260 NC_014215.1 1882285 1882923 R tetR-family transcriptional regulator complement(1882285..1882923) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283536 YP_003688659.1 CDS PFREUD_17270 NC_014215.1 1882988 1884415 D transmembrane efflux protein 1882988..1884415 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282888 YP_003688660.1 CDS ppx NC_014215.1 1884681 1885637 R Guanosine 3prime-diphosphate 5prime-triphosphate + H2O <=> Guanosine 3prime,5prime-bis(diphosphate) + Orthophosphate; Ppx/GppA phosphatase complement(1884681..1885637) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282890 YP_003688661.1 CDS PFREUD_17300 NC_014215.1 1885634 1886149 R hypothetical protein complement(1885634..1886149) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284113 YP_003688662.1 CDS PFREUD_17310 NC_014215.1 1886229 1886870 R hypothetical protein complement(1886229..1886870) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282891 YP_003688663.1 CDS eno1 NC_014215.1 1887148 1888437 R 2-phospho-D-glycerate = phosphoenolpyruvate + H2O, homodimer, cofactor : magnesium; enolase complement(1887148..1888437) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282892 YP_003688664.1 CDS PFREUD_17330 NC_014215.1 1888552 1889223 R MazG family transcriptional regulator complement(1888552..1889223) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283535 YP_003688665.1 CDS PFREUD_17340 NC_014215.1 1889223 1889756 R hypothetical protein complement(1889223..1889756) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282893 YP_003688666.1 CDS mfd NC_014215.1 1889878 1893576 R Necessary for strand-specific repair. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognized by TRCF which releases RNAP and the truncated transcript; the TCRF may replace RNAP at the lesion site and then recruit the uvrA/B/C repair system; transcription-repair coupling factor complement(1889878..1893576) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282894 YP_003688667.1 CDS PFREUD_17360 NC_014215.1 1893652 1894017 R hypothetical protein complement(1893652..1894017) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283883 YP_003688668.1 CDS pth NC_014215.1 1894085 1894678 R N-Substituted aminoacyl-tRNA + H2O <=> N-Substituted amino acid + tRNA; peptidyl-tRNA hydrolase complement(1894085..1894678) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282895 YP_003688670.1 CDS rplY NC_014215.1 1894883 1895542 R This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18; 50S ribosomal protein L25 complement(1894883..1895542) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282896 YP_003688671.1 CDS prs NC_014215.1 1895920 1896915 R ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate; ribose-phosphate pyrophosphokinase complement(1895920..1896915) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284221 YP_003688672.1 CDS glmU NC_014215.1 1896949 1898496 R UTP + N-acetyl-D-glucosamine 1-phosphate <=> Pyrophosphate + UDP-N-acetyl-D-glucosamine and UTP + N-acetyl-alpha-D-glucosamine 1-phosphate <=> Pyrophosphate + UDP-N-acetyl-D-glucosamine; UDP-N-acetylglucosamine pyrophosphorylase complement(1896949..1898496) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284126 YP_003688673.1 CDS PFREUD_17420 NC_014215.1 1898574 1898675 R hypothetical protein complement(1898574..1898675) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283621 YP_003688674.1 CDS pyrB NC_014215.1 1898923 1899969 D carbamoyl phosphate + L-aspartate <=> Orthophosphate + N-carbamoyl-L-aspartate; aspartate carbamoyltransferase 1898923..1899969 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282898 YP_003688675.1 CDS tetR7 NC_014215.1 1900064 1900873 D TetR family transcriptional regulator 1900064..1900873 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284152 YP_003688676.1 CDS ispE NC_014215.1 1900908 1901885 R 4-(Cytidine 5prime-diphospho)-2-C-methyl-D-erythritol + ATP <=> 2-phospho-4-(cytidine 5prime-diphospho)-2-C-methyl-D-erythritol + ADP; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(1900908..1901885) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284326 YP_003688677.1 CDS ksgA NC_014215.1 1901962 1902831 R Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3prime-end of 16S rRNA in the 30S particle. Its inactivation leads to kasugamycin resistance; dimethyladenosine transferase complement(1901962..1902831) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283794 YP_003688678.1 CDS tatD NC_014215.1 1902828 1903856 R TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.; DNAse complement(1902828..1903856) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283803 YP_003688679.1 CDS PFREUD_17490 NC_014215.1 1903989 1904867 R pfam00590, TP_methylase, Tetrapyrrole (Corrin/Porphyrin) methylases. This family uses S-AdoMet in the methylation of diverse substrates. This family includes a related group of bacterial proteins of unknown function. This family includes the methylase Dipthine synthase.; methylase complement(1903989..1904867) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284317 YP_003688680.1 CDS PFREUD_17500 NC_014215.1 1904953 1907340 R hypothetical protein complement(1904953..1907340) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282899 YP_003688681.1 CDS PFREUD_17510 NC_014215.1 1907552 1909186 D glycosyl transferase family protein 1907552..1909186 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282900 YP_003688682.1 CDS PFREUD_17520 NC_014215.1 1909236 1910300 D hypothetical protein 1909236..1910300 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282901 YP_003688683.1 CDS rutG NC_014215.1 1910422 1911972 D Pyrimidine permease RutG (Pyrimidine utilization protein G) 1910422..1911972 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282902 YP_003688684.1 CDS PFREUD_17540 NC_014215.1 1912003 1912524 R hypothetical protein complement(1912003..1912524) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284256 YP_003688685.1 CDS PFREUD_17550 NC_014215.1 1912705 1912791 D hypothetical protein 1912705..1912791 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282903 YP_003688686.1 CDS galK1 NC_014215.1 1912788 1913984 D ATP + D-Galactose <=> ADP + alpha-D-Galactose 1-phosphate; galactokinase 1912788..1913984 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282904 YP_003688687.1 CDS usp NC_014215.1 1914141 1914674 D The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents; Stress protein 1914141..1914674 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283595 YP_003688688.1 CDS PFREUD_17580 NC_014215.1 1914671 1915087 D CRCB is a putative integral membrane protein possibly involved in chromosome condensation. Over expression in E. Coli also leads to camphor resistance.; hypothetical protein 1914671..1915087 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284462 YP_003688689.1 CDS PFREUD_17590 NC_014215.1 1915084 1915470 D hypothetical protein 1915084..1915470 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282905 YP_003688690.1 CDS PFREUD_17600 NC_014215.1 1915530 1916003 D acetyltransferase 1915530..1916003 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282906 YP_003688691.1 CDS gdh NC_014215.1 1916123 1917487 R L-glutamate + H2O + NADP+ = 2-oxoglutarate + NH3 + NADPH. Homohexamer (By similarity). Belongs to the Glu/Leu/Phe/Val dehydrogenases family. Evidenced as a heat stress proetin in P. freudenreichii; glutamate dehydrogenase complement(1916123..1917487) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282907 YP_003688692.1 CDS PFREUD_17620 NC_014215.1 1917642 1918886 R multidrug MFS transporter complement(1917642..1918886) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283608 YP_003688693.1 CDS PFREUD_17630 NC_014215.1 1918906 1919166 D hypothetical protein 1918906..1919166 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282908 YP_003688694.1 CDS PFREUD_17640 NC_014215.1 1918928 1919221 D hypothetical protein 1918928..1919221 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282909 YP_003688695.1 CDS tetR8 NC_014215.1 1919273 1919866 D TetR family transcriptional regulator 1919273..1919866 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282910 YP_003688696.1 CDS proP NC_014215.1 1919942 1921381 R Proton symporter that senses osmotic shifts and responds by importing osmolytes such as proline, glycine betaine, stachydrine, pipecolic acid, ectoine and taurine. It is both an osmosensor and an osmoregulator which is available to participate early in the bacterial osmoregulatory response; proline/betaine transporter complement(1919942..1921381) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284327 YP_003688697.1 CDS PFREUD_17670 NC_014215.1 1921520 1922953 R permease complement(1921520..1922953) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284120 YP_003688698.1 CDS arsR5 NC_014215.1 1923026 1923430 R transcriptional regulator complement(1923026..1923430) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282911 YP_003688699.1 CDS marR3 NC_014215.1 1923414 1923848 R MarR family transcriptional regulator complement(1923414..1923848) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283352 YP_003688700.1 CDS PFREUD_17700 NC_014215.1 1923912 1924280 D Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.; hypothetical protein 1923912..1924280 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283860 YP_003688701.1 CDS PFREUD_17710 NC_014215.1 1924330 1924983 R peptidase complement(1924330..1924983) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282912 YP_003688703.1 CDS PFREUD_17730 NC_014215.1 1925151 1925216 D hypothetical protein 1925151..1925216 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282914 YP_003688704.1 CDS PFREUD_17740 NC_014215.1 1925287 1926066 R hypothetical protein complement(1925287..1926066) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282915 YP_003688705.1 CDS PFREUD_17750 NC_014215.1 1926229 1926888 R two-component system, regulatory protein complement(1926229..1926888) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282916 YP_003688706.1 CDS PFREUD_17760 NC_014215.1 1926885 1928072 R sensor kinase-membrane protein complement(1926885..1928072) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282917 YP_003688707.1 CDS PFREUD_17770 NC_014215.1 1928223 1928786 D hypothetical protein 1928223..1928786 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282918 YP_003688708.1 CDS PFREUD_17780 NC_014215.1 1929022 1929384 D No TM domain, no signal peptide; hypothetical protein 1929022..1929384 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282919 YP_003688709.1 CDS PFREUD_17790 NC_014215.1 1929387 1929509 R hypothetical protein complement(1929387..1929509) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282920 YP_003688710.1 CDS araC2 NC_014215.1 1929602 1929880 D arabinose operon control protein; AraC family transcriptional regulator 1929602..1929880 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282921 YP_003688711.1 CDS hspR1 NC_014215.1 1930285 1930704 R Binds to three inverted repeats (IR1-IR3) in the promoter region of the dnaK operon; heat shock protein transcriptional repressor HspR1 complement(1930285..1930704) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283323 YP_003688712.1 CDS dnaJ1 NC_014215.1 1930706 1931803 R Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins; molecular chaperone DnaJ complement(1930706..1931803) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283727 YP_003688713.1 CDS grpE1 NC_014215.1 1931800 1932369 R Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with dnaK; molecular chaperone GrpE1 complement(1931800..1932369) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283513 YP_003688714.1 CDS dnaK1 NC_014215.1 1932530 1934359 R Belongs to the heat shock protein 70 family. Acts as a chaperone. Several 70 to 75 kda Hsp70 chaperones are expressed as disctinct heat shock proteins; molecular chaperone DnaK complement(1932530..1934359) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283664 YP_003688715.1 CDS PFREUD_17850 NC_014215.1 1934513 1934752 R hypothetical protein complement(1934513..1934752) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283516 YP_003688716.1 CDS htrA1 NC_014215.1 1934739 1935611 R Trypsin-like serine protease complement(1934739..1935611) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282922 YP_003688717.1 CDS PFREUD_17870 NC_014215.1 1935658 1935876 D hypothetical protein 1935658..1935876 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283729 YP_003688718.1 CDS PFREUD_17880 NC_014215.1 1935893 1936414 R hypothetical protein complement(1935893..1936414) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282923 YP_003688719.1 CDS PFREUD_17890 NC_014215.1 1936637 1937302 R two-component system response regulator complement(1936637..1937302) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282924 YP_003688720.1 CDS PFREUD_17900 NC_014215.1 1937299 1938222 R two-component system sensor kinase. membrane protein complement(1937299..1938222) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282925 YP_003688721.1 CDS PFREUD_17910 NC_014215.1 1938346 1939113 R hypothetical protein complement(1938346..1939113) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282926 YP_003688722.1 CDS clpB NC_014215.1 1939480 1942062 D The protein has been identified by proteomics as a 94 kDa protein induced by heat, bile salts and acid stress; ATP-dependent Clp protease B2 1939480..1942062 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282927 YP_003688723.1 CDS PFREUD_17930 NC_014215.1 1942131 1942865 R hypothetical protein complement(1942131..1942865) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283421 YP_003688724.1 CDS trxA5 NC_014215.1 1942970 1943395 R Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions; thioredoxin complement(1942970..1943395) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282928 YP_003688725.1 CDS PFREUD_17960 NC_014215.1 1944008 1945510 D recombinase 1944008..1945510 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282929 YP_003688726.1 CDS PFREUD_17980 NC_014215.1 1945558 1946367 R hypothetical protein complement(1945558..1946367) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282931 YP_003688727.1 CDS rimJ NC_014215.1 1946436 1947146 R acetyl-CoA + ribosomal-protein L-alanine <=> CoA + ribosomal-protein N-acetyl-L-alanine; ribosomal-protein-alanine acetyltransferase complement(1946436..1947146) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282932 YP_003688728.1 CDS moeA1 NC_014215.1 1947150 1948436 R Involved in the biosynthesis of a demolybdo-cofactor (molybdopterin), necessary for molybdo-enzymes; molybdenum cofactor synthesis protein complement(1947150..1948436) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284180 YP_003688729.1 CDS ygfA NC_014215.1 1948455 1949165 D catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+.Dayan A, Bertrand R, Beauchemin M, Chahla D, Mamo A, Filion M, 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin.; 5-formyltetrahydrofolate cyclo-ligase 1948455..1949165 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283901 YP_003688730.1 CDS PFREUD_18020 NC_014215.1 1949321 1949728 D type I antifreeze protein 1949321..1949728 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284489 YP_003688731.1 CDS PFREUD_18030 NC_014215.1 1949834 1950469 D hypothetical protein 1949834..1950469 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282933 YP_003688733.1 CDS mscL NC_014215.1 1950550 1951005 D Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell; Large conductance mechanosensitive channel 1950550..1951005 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282935 YP_003688734.1 CDS PFREUD_18060 NC_014215.1 1951059 1951469 R hypothetical protein complement(1951059..1951469) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283911 YP_003688735.1 CDS ugpA NC_014215.1 1951462 1952835 R UTP + D-glucose 1-phosphate <=> Pyrophosphate + UDP-glucose; UTP-glucose-1-phosphate uridylyltransferase complement(1951462..1952835) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282936 YP_003688736.1 CDS PFREUD_18090 NC_014215.1 1953410 1953742 D hypothetical protein 1953410..1953742 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282937 YP_003688737.1 CDS PFREUD_18100 NC_014215.1 1953887 1954507 R an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond.isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.; isochorismatase hydrolase complement(1953887..1954507) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282938 YP_003688738.1 CDS pf1655 NC_014215.1 1954504 1955313 R recombinant protein active on 1- naphthyl actetate and 1- naphthyl propionate; carboxylic ester hydrolase complement(1954504..1955313) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282939 YP_003688739.1 CDS PFREUD_18120 NC_014215.1 1955465 1955824 D hypothetical protein 1955465..1955824 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284034 YP_003688741.1 CDS trxA4 NC_014215.1 1955989 1956324 R thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. protein dithiol + NAD+ <=> protein disulfide + NADH + H+; thiredoxine complement(1955989..1956324) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282941 YP_003688742.1 CDS dtxR NC_014215.1 1956440 1957117 R Iron-dependent repressor complement(1956440..1957117) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284438 YP_003688743.1 CDS serC NC_014215.1 1957294 1958415 D phosphoserine aminotransferase 1957294..1958415 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283527 YP_003688744.1 CDS PFREUD_18170 NC_014215.1 1958458 1958895 R hypothetical protein complement(1958458..1958895) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284278 YP_003688745.1 CDS PFREUD_18180 NC_014215.1 1959006 1960568 R permease complement(1959006..1960568) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282942 YP_003688746.1 CDS PFREUD_18190 NC_014215.1 1960614 1960955 D hypothetical protein 1960614..1960955 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282943 YP_003688747.1 CDS PFREUD_18200 NC_014215.1 1961033 1961812 R hypothetical protein complement(1961033..1961812) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282944 YP_003688748.1 CDS cspB NC_014215.1 1961816 1962202 R RNA-binding domain that functions as a RNA-chaperone in bacteria; Cold shock protein complement(1961816..1962202) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282945 YP_003688749.1 CDS PFREUD_18220 NC_014215.1 1962456 1963457 D hypothetical protein 1962456..1963457 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283449 YP_003688750.1 CDS PFREUD_18230 NC_014215.1 1963454 1965829 D hypothetical protein 1963454..1965829 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282946 YP_003688751.1 CDS tnpA NC_014215.1 1965766 1967073 R transposase complement(1965766..1967073) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282947 YP_003688752.1 CDS PFREUD_18240 NC_014215.1 1967040 1967114 R hypothetical protein complement(1967040..1967114) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284379 YP_003688753.1 CDS PFREUD_18250 NC_014215.1 1967288 1968241 D hypothetical protein 1967288..1968241 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282948 YP_003688754.1 CDS PFREUD_18260 NC_014215.1 1968260 1968853 D hypothetical protein 1968260..1968853 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282949 YP_003688755.1 CDS tnpA NC_014215.1 1969294 1970259 D transposase 1969294..1970259 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282950 YP_003688756.1 CDS PFREUD_18270 NC_014215.1 1970570 1971952 R S-layer protein complement(1970570..1971952) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284380 YP_003688757.1 CDS PFREUD_18280 NC_014215.1 1971885 1972100 R hypothetical protein complement(1971885..1972100) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282951 YP_003688758.1 CDS slpA NC_014215.1 1972601 1974232 R several slp were identified in P. freudenreichii; surface layer protein A complement(1972601..1974232) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282952 YP_003688759.1 CDS PFREUD_18300 NC_014215.1 1974830 1975390 R hydrolyse a wide range of organic pyrophosphates, polyphosphates, nucleotide sugars and RNA caps, with varying degrees of substrate specificity. MicrotT, have the ability to degrade potentially mutagenic, oxidised nucleotides while others control the levels of metabolic intermediates and signalling compounds. McLennan AG cell Mol Life Sci. 2006 Jan;63(2):123-43; NUDIX hydrolase complement(1974830..1975390) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284285 YP_003688760.1 CDS groL2 NC_014215.1 1982176 1983798 R Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. groL1 and groL2 are expressed as 2 distinct heat shock proteins; molecular chaperone groEL complement(1982176..1983798) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282953 YP_003688761.1 CDS PFREUD_18480 NC_014215.1 1984142 1984423 R hypothetical protein complement(1984142..1984423) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283661 YP_003688762.1 CDS manA NC_014215.1 1984642 1985841 D D-Mannose 6-phosphate <=> D-Fructose 6-phosphate and D-Mannose 6-phosphate <=> beta-D-Fructose 6-phosphate; phosphomannose isomerase 1984642..1985841 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282954 YP_003688763.1 CDS PFREUD_18510 NC_014215.1 1986330 1988660 D drug exporters of the RND superfamily 1986330..1988660 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282955 YP_003688764.1 CDS PFREUD_18520 NC_014215.1 1988781 1990922 R TrkA, potassium transporter complement(1988781..1990922) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282956 YP_003688765.1 CDS PFREUD_18530 NC_014215.1 1990929 1991312 R hypothetical protein complement(1990929..1991312) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282957 YP_003688766.1 CDS PFREUD_18540 NC_014215.1 1991397 1991906 D hypothetical protein 1991397..1991906 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282958 YP_003688767.1 CDS PFREUD_18550 NC_014215.1 1991931 1992941 R hypothetical protein complement(1991931..1992941) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282959 YP_003688768.1 CDS PFREUD_18560 NC_014215.1 1993015 1994289 R peptidase, M20/M25/M40 family complement(1993015..1994289) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282960 YP_003688769.1 CDS sdaA NC_014215.1 1994444 1995856 D L-serine <=> pyruvate + NH3 / alpha-amino acid <=> 2-Oxo acid + NH3 L-serine <=> 2-aminoacrylate + H2O /; L-serine dehydratase 1994444..1995856 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282961 YP_003688770.1 CDS PFREUD_18580 NC_014215.1 1996084 1997181 D ABC transporter ATP-binding protein 1996084..1997181 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284263 YP_003688771.1 CDS metB NC_014215.1 1997431 1998618 D cystathionine gamma-synthase 1997431..1998618 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282962 YP_003688772.1 CDS PFREUD_18600 NC_014215.1 1998732 2000114 D hypothetical protein 1998732..2000114 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283876 YP_003688773.1 CDS PFREUD_18610 NC_014215.1 2000171 2000572 R hypothetical protein complement(2000171..2000572) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282963 YP_003688775.1 CDS PFREUD_18630 NC_014215.1 2000814 2001470 R hypothetical protein complement(2000814..2001470) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282965 YP_003688776.1 CDS PFREUD_18640 NC_014215.1 2001476 2003014 R iron-sulfur protein complement(2001476..2003014) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282966 YP_003688777.1 CDS PFREUD_18650 NC_014215.1 2003011 2003820 R Oxidoreductase complement(2003011..2003820) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282967 YP_003688778.1 CDS lldP NC_014215.1 2003861 2005624 R L-lactate permease complement(2003861..2005624) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282968 YP_003688779.1 CDS PFREUD_18670 NC_014215.1 2005999 2007069 D transcriptional regulator 2005999..2007069 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283831 YP_003688780.1 CDS cysS2 NC_014215.1 2007196 2008599 D ATP + L-cysteine + tRNA(Cys) <=> AMP + Pyrophosphate + L-Cysteinyl-tRNA(Cys); cysteinyl-tRNA synthetase 2007196..2008599 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282969 YP_003688781.1 CDS PFREUD_18690 NC_014215.1 2008599 2009522 D tRNA/rRNA methyltransferase 2008599..2009522 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283467 YP_003688782.1 CDS PFREUD_18700 NC_014215.1 2009734 2011221 D amino acid ABC transporter permease 2009734..2011221 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282970 YP_003688784.1 CDS PFREUD_18720 NC_014215.1 2011540 2013030 D amino acid ABC transporter permease 2011540..2013030 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282972 YP_003688785.1 CDS ansA NC_014215.1 2012972 2014042 D L-asparagine + H2O = L-aspartate + NH3.; L-asparaginase I 2012972..2014042 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282973 YP_003688786.1 CDS glyA NC_014215.1 2014263 2015711 D * 5,10-methylenetetrahydrofolate + glycine + H2O <=> Tetrahydrofolate + L-serine; glycine hydroxymethyltransferase 2014263..2015711 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283313 YP_003688787.1 CDS ispF NC_014215.1 2015911 2016411 R regulated by CarD; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(2015911..2016411) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283643 YP_003688788.1 CDS ispD NC_014215.1 2016408 2017154 R transcription regulated by CarD, 2-C-methyl-D-erythritol 4-phosphate + CTP <=> 4-(Cytidine 5 prime-diphospho)-2-C-methyl-D-erythritol + Pyrophosphate; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(2016408..2017154) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283795 YP_003688789.1 CDS carD NC_014215.1 2017236 2017721 R probably regulates isp genes; CarD family transcriptional regulator complement(2017236..2017721) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283793 YP_003688790.1 CDS regX NC_014215.1 2017862 2018539 R Probably forms part of a two-component regulatory system regX3/senX3; Response regulator receiver complement(2017862..2018539) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283394 YP_003688791.1 CDS senX NC_014215.1 2018545 2019732 R ATP + protein L-histidine = ADP + protein N-phospho-L-histidine; Sensor-like histidine kinase complement(2018545..2019732) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284172 YP_003688792.1 CDS phoU NC_014215.1 2020026 2020703 D phosphate transport system protein 2020026..2020703 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284275 YP_003688793.1 CDS gpm2 NC_014215.1 2020903 2021652 R phosphoglycerate mutase complement(2020903..2021652) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284071 YP_003688794.1 CDS PFREUD_18820 NC_014215.1 2021983 2022714 D Regulatory protein 2021983..2022714 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283656 YP_003688795.1 CDS sdh NC_014215.1 2022805 2023548 D L-serine + NADP+ <=> 2-aminomalonate semialdehyde + NADPH + H+; serine 3-dehydrogenase 2022805..2023548 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282974 YP_003688796.1 CDS bccp NC_014215.1 2023679 2024050 R operon (5S +12S +1.3S). Expressed in the presence of substrate. Overexpressed in response to stress.; methylmalonyl-CoA carboxytransferase complement(2023679..2024050) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284264 YP_003688797.1 CDS PFREUD_18850 NC_014215.1 2024067 2024315 R hypothetical protein complement(2024067..2024315) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283374 YP_003688798.1 CDS mmdA NC_014215.1 2024331 2025905 R operon (5S +12S +1.3S). Expressed in the presence of substrate. Overexpressed in response to stress.; methylmalonyl-CoA carboxytransferase 12S subunit complement(2024331..2025905) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282975 YP_003688799.1 CDS PFREUD_18870 NC_014215.1 2025921 2027438 R operon transcarboxylase (5S + 12S +1.3S) The 5S subunit specifically catalyzes the transfer of the carboxyl group from biotin of the 1.3S subunit to pyruvate to form oxaloacetate and 1.3S biotin. Expressed in the presence of substrate. Overexpressed in response to stress.; methylmalonyl-CoA carboxytransferase 5S subunit complement(2025921..2027438) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283890 YP_003688800.1 CDS hemL1 NC_014215.1 2027707 2029032 R (S)-4-amino-5-oxopentanoate = 5-aminolevulinate Porphyrin biosynthesis by the C5 pathway; second step. Homodimer. cofactor : Pyridoxal phosphate; glutamate-1-semialdehyde 2,1-aminomutase complement(2027707..2029032) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282976 YP_003688801.1 CDS hemR NC_014215.1 2029090 2029809 R protein HemR complement(2029090..2029809) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283691 YP_003688802.1 CDS hemX NC_014215.1 2029918 2031381 D involved in porphyrin synthesis; membrane-bound transport protein (HemX protein) 2029918..2031381 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283694 YP_003688803.1 CDS hemB NC_014215.1 2031410 2032408 R porphyrin biosynthese. 2 5-aminolevulinate = porphobilinogen + 2 H2O cofactor : zinc; delta-aminolevulinic acid dehydratase complement(2031410..2032408) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283695 YP_003688804.1 CDS hemH NC_014215.1 2032531 2033589 R Catalyzes the ferrous insertion into protoporphyrin IX. Protoporphyrin + Fe(2+) = protoheme + 2 H(+).; ferrochelatase complement(2032531..2033589) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283685 YP_003688805.1 CDS hemY NC_014215.1 2033586 2035154 R Catalyzes the 6-electron oxidation of protoporphyrinogen IX to form protoporphyrin IX. Porphyrin biosynthesis; penultimate step. Protoporphyrinogen-IX + 1.5 O2 = protoporphyrin-IX + 3 H2O. Homodimer. Cofactor : 1 FAD per dimer; protoporphyrinogen oxidase complement(2033586..2035154) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283689 YP_003688806.1 CDS PFREUD_18940 NC_014215.1 2035158 2036279 R Fe-S oxidoreductase complement(2035158..2036279) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283696 YP_003688807.1 CDS hemE NC_014215.1 2036281 2038179 R Uroporphyrinogen III <=> Coproporphyrinogen III + 4 CO2 and Uroporphyrinogen I <=> Coproporphyrinogen I + 4 CO2; uroporphyrinogen decarboxylase complement(2036281..2038179) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282977 YP_003688808.1 CDS hemC NC_014215.1 2038176 2039108 R Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. 4 porphobilinogen + H2O = hydroxymethylbilane + 4 NH3. Cofactor : binds 1 dipyrromethane group covalently; porphobilinogen deaminase complement(2038176..2039108) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283688 YP_003688809.1 CDS hemA NC_014215.1 2039105 2040358 R L-glutamyl-tRNA(Glu) + NADPH + H+ <=> (S)-4-amino-5-oxopentanoate + tRNA(Glu) + NADP+; glutamyl-tRNA reductase complement(2039105..2040358) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283686 YP_003688810.1 CDS asnB NC_014215.1 2040567 2042477 D ATP + L-aspartate + L-glutamine + H2O <=> AMP + Pyrophosphate + L-asparagine + L-glutamate; asparagine synthase 2040567..2042477 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283684 YP_003688811.1 CDS ilvD NC_014215.1 2042610 2044451 D dihydroxy-acid dehydratase 2042610..2044451 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283359 YP_003688812.1 CDS lysE NC_014215.1 2044779 2045387 R lysine exporter protein complement(2044779..2045387) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283740 YP_003688813.1 CDS iolE NC_014215.1 2045634 2046677 R carbohydrate degradation, myo-inositol degradation to acetyl-CoA; 2-keto-myo-inositol dehydratase complement(2045634..2046677) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283842 YP_003688814.1 CDS PFREUD_19020 NC_014215.1 2046732 2047079 R hypothetical protein complement(2046732..2047079) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283787 YP_003688815.1 CDS iolG1 NC_014215.1 2047227 2048216 R carbohydrate degradation, myo-inositol degradation to acetyl-CoA; myo-inositol 2-dehydrogenase complement(2047227..2048216) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282978 YP_003688816.1 CDS tal2 NC_014215.1 2048530 2049606 R Sedoheptulose 7-phosphate + D-glyceraldehyde 3-phosphate = D-erythrose 4-phosphate + D-fructose 6-phosphate.; transaldolase complement(2048530..2049606) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283788 YP_003688817.1 CDS PFREUD_19050 NC_014215.1 2049800 2050552 R GntR family transcriptional regulator complement(2049800..2050552) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284314 YP_003688818.1 CDS iolC NC_014215.1 2050826 2051815 D carbohydrate degradation, myo-inositol degradation to acetyl-CoA; myo-inositol catabolism protein IolC 2050826..2051815 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282979 YP_003688819.1 CDS PFREUD_19070 NC_014215.1 2051818 2052687 D hypothetical protein 2051818..2052687 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283785 YP_003688820.1 CDS iolB NC_014215.1 2052684 2053556 D carbohydrate degradation, myo-inositol degradation to acetyl-CoA; myo-inositol catabolism protein IolB 2052684..2053556 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282980 YP_003688821.1 CDS iolD NC_014215.1 2053656 2055563 D carbohydrate degradation, myo-inositol degradation to acetyl-CoA; acetolactate synthase 2053656..2055563 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283784 YP_003688822.1 CDS iolA NC_014215.1 2055829 2057334 D * 3-Oxopropanoate + CoA + NAD+ <=> acetyl-CoA + CO2 + NADH + H+; myo-inositol catabolism protein IolA 2055829..2057334 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283786 YP_003688823.1 CDS iolT3 NC_014215.1 2057673 2059271 D transporter in the P.freudenreichii iol operon; myo-inositol transporter IolT3 2057673..2059271 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283783 YP_003688824.1 CDS PFREUD_19120 NC_014215.1 2059437 2060729 D hypothetical protein 2059437..2060729 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283792 YP_003688825.1 CDS PFREUD_19130 NC_014215.1 2060849 2062003 D zinc-containing alcohol dehydrogenase 2060849..2062003 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282981 YP_003688826.1 CDS PFREUD_19140 NC_014215.1 2062303 2062578 R hypothetical protein complement(2062303..2062578) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282982 YP_003688827.1 CDS fba1 NC_014215.1 2062833 2063855 R D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde 3-phosphate, cofactor : zinc; Fructose-bisphosphate aldolase class II complement(2062833..2063855) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282983 YP_003688828.1 CDS PFREUD_19160 NC_014215.1 2064084 2064719 R hypothetical protein complement(2064084..2064719) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283543 YP_003688829.1 CDS spoU3 NC_014215.1 2064716 2065492 R tRNA/rRNA methyltransferase complement(2064716..2065492) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282984 YP_003688830.1 CDS dedD NC_014215.1 2065553 2066227 D hypothetical protein 2065553..2066227 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284294 YP_003688831.1 CDS lemA NC_014215.1 2066435 2067304 R The members of this family are related to the LemA protein. LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular. The exact molecular function of this protein is uncertain; hypothetical protein complement(2066435..2067304) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283485 YP_003688832.1 CDS pyrE NC_014215.1 2067574 2068131 R Orotidine 5prime-phosphate + Pyrophosphate <=> Orotate + 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(2067574..2068131) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283815 YP_003688833.1 CDS srtA NC_014215.1 2068211 2068819 R transpeptidase of Gram-positive bacteria, cleaves surface proteins at the LPXTG motif between Thr and Gly and catalyzes the formation of an amide bond between the carboxyl group of Thr and the amino group of cell-wall crossbridges.; sortase complement(2068211..2068819) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284155 YP_003688835.1 CDS speE NC_014215.1 2068971 2069888 R S-adenosylmethioninamine + Putrescine <=> 5prime-methylthioadenosine + Spermidine / S-adenosylmethioninamine + Spermidine <=> 5prime-methylthioadenosine + Spermine; spermidine synthase complement(2068971..2069888) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282985 YP_003688836.1 CDS PFREUD_19240 NC_014215.1 2070103 2072094 D The OPT family of oligopeptide transporters is distinct from the ABC pfam00005 and PTR pfam00854 transporter families.; Oligopeptide transporter, OPT family protein 2070103..2072094 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284291 YP_003688837.1 CDS clpB NC_014215.1 2072215 2074791 R The protein has been identified by proteomics as a 95 kDa protein induced by various stresses.several 90 to 100 kda clp chaperones are expressed as disctinct heat shock proteins; ATP-dependent Clp protease B1 complement(2072215..2074791) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282986 YP_003688838.1 CDS hemL2 NC_014215.1 2075174 2076541 R 5-aminolevulinate <=> (S)-4-amino-5-oxopentanoate; glutamate-1-semialdehyde 2,1-aminomutase complement(2075174..2076541) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283420 YP_003688839.1 CDS potE NC_014215.1 2076683 2078338 R amino acid ABC transporter permease complement(2076683..2078338) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283692 YP_003688840.1 CDS purA NC_014215.1 2078873 2080156 R GTP + IMP + L-aspartate = GDP + phosphate + N6-(1,2-dicarboxyethyl)-AMP; adenylosuccinate synthetase complement(2078873..2080156) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284093 YP_003688841.1 CDS PFREUD_19290 NC_014215.1 2080353 2080568 R hypothetical protein complement(2080353..2080568) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284138 YP_003688842.1 CDS aldB NC_014215.1 2080763 2082259 R (S)-lactaldehyde + NAD(+) + H(2)O <=> (S)-lactate + NADH; lactaldehyde dehydrogenase complement(2080763..2082259) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282987 YP_003688843.1 CDS iunH NC_014215.1 2082678 2083691 D nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base.; purine nucleosidase 2082678..2083691 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283307 YP_003688844.1 CDS PFREUD_19320 NC_014215.1 2083791 2084537 R hypothetical protein complement(2083791..2084537) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283798 YP_003688845.1 CDS copA NC_014215.1 2086157 2087692 D Could be involved in copper resistance. May have oxidase activity; multicopper oxidase 2086157..2087692 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283297 YP_003688846.1 CDS TnpD NC_014215.1 2088118 2088462 D transposase IS3/IS911 2088118..2088462 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283443 YP_003688847.1 CDS tnpB NC_014215.1 2088495 2089382 D transposase 2088495..2089382 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284411 YP_003688848.1 CDS PFREUD_19360 NC_014215.1 2089432 2089611 D hypothetical protein 2089432..2089611 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284399 YP_003688849.1 CDS gtfF NC_014215.1 2089608 2091143 D homopolysaccharide synthesis - homology detected with tts, responsible of capsular synthesis of streptococcus pneumoniae; polysaccharide synthase 2089608..2091143 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282989 YP_003688850.1 CDS PFREUD_19390 NC_014215.1 2091485 2092456 R metallophosphoesterase complement(2091485..2092456) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282990 YP_003688851.1 CDS ponA NC_014215.1 2092453 2094660 R The penicillin-binding proteins are bifunctional proteins consisting of transglycosylase and transpeptidase in the N- and C-terminus respectively. The transglycosylase domain catalyses the polymerisation of murein glycan subunits.; penicillin-binding protein complement(2092453..2094660) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282991 YP_003688852.1 CDS whiB3 NC_014215.1 2094907 2095239 D transcription factor WhiB 2094907..2095239 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284092 YP_003688853.1 CDS PFREUD_19420 NC_014215.1 2095229 2095420 D hypothetical protein 2095229..2095420 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284475 YP_003688854.1 CDS PFREUD_19430 NC_014215.1 2095417 2095872 D Inhibits protein synthesis by cleavage of mRNA; endoribonuclease L-PSP 2095417..2095872 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282992 YP_003688855.1 CDS nth NC_014215.1 2095880 2096638 D endonuclease III 2095880..2096638 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282993 YP_003688856.1 CDS PFREUD_19450 NC_014215.1 2096724 2097419 D NUDIX hydrolase 2096724..2097419 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283961 YP_003688857.1 CDS hslR NC_014215.1 2097458 2097811 D S4 protein 2097458..2097811 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282994 YP_003688858.1 CDS CE1826 NC_014215.1 2097942 2099606 R PTS enzyme I complement(2097942..2099606) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283723 YP_003688859.1 CDS PFREUD_19480 NC_014215.1 2099957 2100223 D HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation across the cell membrane.; HPr family phosphocarrier protein 2099957..2100223 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283413 YP_003688860.1 CDS PFREUD_19490 NC_014215.1 2100337 2102982 D Cation-transporting ATPase 2100337..2102982 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282995 YP_003688861.1 CDS PFREUD_19500 NC_014215.1 2103131 2104348 D hypothetical protein 2103131..2104348 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282996 YP_003688862.1 CDS PFREUD_19510 NC_014215.1 2104387 2105523 R hypothetical protein complement(2104387..2105523) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282997 YP_003688863.1 CDS PFREUD_19520 NC_014215.1 2105520 2105999 R hypothetical protein complement(2105520..2105999) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282998 YP_003688864.1 CDS PFREUD_19530 NC_014215.1 2106203 2106430 R hypothetical protein complement(2106203..2106430) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282999 YP_003688865.1 CDS PFREUD_19540 NC_014215.1 2106602 2108449 D glycoside hydrolase 2106602..2108449 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283000 YP_003688866.1 CDS trxA6 NC_014215.1 2108587 2109015 D thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise; thioredoxin 2108587..2109015 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283001 YP_003688867.1 CDS PFREUD_19560 NC_014215.1 2109186 2109902 D forkhead-associated protein 2109186..2109902 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284440 YP_003688868.1 CDS PFREUD_19570 NC_014215.1 2109905 2110378 D involved in signal transduction mechanisms; forkhead-associated protein 2109905..2110378 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283002 YP_003688869.1 CDS pf456 NC_014215.1 2110381 2111916 D hypothetical protein 2110381..2111916 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283003 YP_003688870.1 CDS ftsW2 NC_014215.1 2111907 2113301 D cell division protein 2111907..2113301 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284049 YP_003688871.1 CDS pbpA NC_014215.1 2113298 2114722 D penicillin-binding protein 2113298..2114722 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283582 YP_003688872.1 CDS pknB NC_014215.1 2114814 2116604 D ATP + protein <=> ADP + phosphoprotein; serine/threonine protein kinase 2114814..2116604 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283999 YP_003688873.1 CDS PFREUD_19620 NC_014215.1 2116728 2118500 D hypothetical protein 2116728..2118500 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284079 YP_003688874.1 CDS galK2 NC_014215.1 2118717 2119880 R ATP + D-Galactose <=> ADP + alpha-D-Galactose 1-phosphate; galactokinase complement(2118717..2119880) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283004 YP_003688875.1 CDS nifU2 NC_014215.1 2120055 2120627 R NifU-like protein complement(2120055..2120627) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283596 YP_003688876.1 CDS feoB NC_014215.1 2120829 2122685 R Fe2+ transport system protein B. Molecular function: GTP binding, iron ion binding. cellular component: integral to membrane; Ferrous iron transport protein B complement(2120829..2122685) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283952 YP_003688877.1 CDS feoA NC_014215.1 2122972 2123331 R This family includes FeoA a small protein, probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese.; Ferrous iron transport protein A complement(2122972..2123331) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283547 YP_003688878.1 CDS PFREUD_19670 NC_014215.1 2123770 2124294 D hypothetical protein 2123770..2124294 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283546 YP_003688879.1 CDS PFREUD_19680 NC_014215.1 2124376 2125956 R Na+/H+ antiporter complement(2124376..2125956) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283005 YP_003688880.1 CDS PFREUD_19690 NC_014215.1 2125972 2127831 R hypothetical protein complement(2125972..2127831) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283006 YP_003688881.1 CDS mesJ NC_014215.1 2128306 2128785 R These enzymes are Zn dependent and catalyze the deamination of nucleosides. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway.; zinc-binding CMP/dCMP deaminase complement(2128306..2128785) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283008 YP_003688882.1 CDS PFREUD_19720 NC_014215.1 2128809 2129537 R hypothetical protein complement(2128809..2129537) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283875 YP_003688883.1 CDS upp NC_014215.1 2129726 2130367 D UMP + diphosphate = uracil + 5-phospho-alpha-D-ribose 1-diphosphate. Belongs to the UPRTase family. Pyrimidine salvage pathway.; uracil phosphoribosyltransferase 2129726..2130367 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283009 YP_003688884.1 CDS srt NC_014215.1 2130310 2131236 R sortase complement(2130310..2131236) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284457 YP_003688885.1 CDS PFREUD_19750 NC_014215.1 2131433 2131735 R hypothetical protein complement(2131433..2131735) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284299 YP_003688886.1 CDS PFREUD_19760 NC_014215.1 2132748 2132822 D hypothetical protein 2132748..2132822 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283010 YP_003688887.1 CDS tnpA NC_014215.1 2132789 2134096 D transposase 2132789..2134096 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283011 YP_003688888.1 CDS PFREUD_19790 NC_014215.1 2135672 2138260 R surface-anchored fimbrial subunit complement(2135672..2138260) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283558 YP_003688889.1 CDS PFREUD_19800 NC_014215.1 2138573 2138653 R hypothetical protein complement(2138573..2138653) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283012 YP_003688890.1 CDS typA NC_014215.1 2139375 2141258 D GTP-binding protein TypA 2139375..2141258 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283013 YP_003688891.1 CDS gcvT2 NC_014215.1 2141348 2142397 R glycine + Tetrahydrofolate + NAD+ <=> 5,10-methylenetetrahydrofolate + NH3 + CO2 + NADH + H+; glycine cleavage system protein T complement(2141348..2142397) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284444 YP_003688892.1 CDS PFREUD_19830 NC_014215.1 2142537 2143040 R hypothetical protein complement(2142537..2143040) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283607 YP_003688893.1 CDS PFREUD_19840 NC_014215.1 2143057 2143218 R hypothetical protein complement(2143057..2143218) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283014 YP_003688895.1 CDS dtd NC_014215.1 2143353 2143784 D a class of tRNA-dependent hydrolases which are capable of hydrolyzing the ester bond of D-Tyrosyl-tRNA reducing the level of cellular D-Tyrosine while recycling the peptidyl-tRNA; found in bacteria and in eukaryotes but not in archea; beta barrel-like fold structure; forms homodimers in which two surface cavities serve as the active site for tRNA binding.; D-tyrosyl-tRNA(Tyr) deacylase 2143353..2143784 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283016 YP_003688896.1 CDS glnR NC_014215.1 2143949 2144608 D transcriptional regulator 2143949..2144608 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283526 YP_003688897.1 CDS PFREUD_19880 NC_014215.1 2144980 2146059 D inositol 1-phosphate <=> D-glucose 6-phosphate. inositol-1-phosphate catalyses the conversion of glucose-6- phosphate to inositol-1-phosphate, which is then dephosphorylated to inositol. inositol phosphates play an important role in signal transduction.; inositol-1-phosphate synthase 2144980..2146059 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283625 YP_003688898.1 CDS mmsB NC_014215.1 2146484 2147284 D beta-hydroxyacid dehydrogenase 2146484..2147284 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283017 YP_003688899.1 CDS pcaC2 NC_014215.1 2147463 2148188 D Benzoate degradation via hydroxylation 2-carboxy-2,5-dihydro-5-oxofuran-2-acetate <=> 2-Oxo-2,3-dihydrofuran-5-acetate + CO2; 4-carboxymuconolactone decarboxylase 2147463..2148188 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283892 YP_003688900.1 CDS galE3 NC_014215.1 2148220 2149248 R UDP-glucose 4-epimerase complement(2148220..2149248) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284001 YP_003688901.1 CDS PFREUD_19920 NC_014215.1 2149460 2150398 D N-acetyltransferase GCN5 2149460..2150398 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283594 YP_003688902.1 CDS ppk NC_014215.1 2150395 2152584 D ATP + Pyrophosphate <=> ADP + Triphosphate; polyphosphate kinase 2150395..2152584 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283018 YP_003688903.1 CDS PFREUD_19940 NC_014215.1 2152581 2153471 D NUDIX hydrolase NTP pyrophosphohydrolases including oxidative damage repair enzymes 2152581..2153471 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284110 YP_003688904.1 CDS pstS NC_014215.1 2153680 2154768 D The complex is composed of two ATP-binding proteins (pstB), two transmembrane proteins (pstC and pstA) and a solute-binding protein (pstS); phosphate ABC transporter substrate-binding protein 2153680..2154768 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283019 YP_003688905.1 CDS pstC NC_014215.1 2154765 2155745 D The complex is composed of two ATP-binding proteins (pstB), two transmembrane proteins (pstC and pstA) and a solute-binding protein (pstS); ABC transporter permease 2154765..2155745 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284133 YP_003688906.1 CDS pstA NC_014215.1 2155742 2156902 D The complex is composed of two ATP-binding proteins (pstB), two transmembrane proteins (pstC and pstA) and a solute-binding protein (pstS); ABC transporter permease 2155742..2156902 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284132 YP_003688907.1 CDS pstB NC_014215.1 2156877 2157686 D TC3.A.1.7 The complex is composed of two ATP-binding proteins (pstB), two transmembrane proteins (pstC and pstA) and a solute-binding protein (pstS); phosphate ABC transporter substrate-binding protein 2156877..2157686 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284130 YP_003688908.1 CDS arsC NC_014215.1 2157667 2158143 R arsenate ion + glutaredoxin <=> arsenite + glutaredoxin disulfide; arsenate reductase complement(2157667..2158143) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284131 YP_003688909.1 CDS PFREUD_20000 NC_014215.1 2157731 2157817 D hypothetical protein 2157731..2157817 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283346 YP_003688910.1 CDS arsR6 NC_014215.1 2158119 2158493 R ArsR family transcriptional regulator complement(2158119..2158493) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283020 YP_003688911.1 CDS arsD NC_014215.1 2158590 2159057 D arsenical resistance repressor 2158590..2159057 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283353 YP_003688912.1 CDS arsA NC_014215.1 2159054 2160829 D arsenic ABC transporter ATPase 2159054..2160829 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283347 YP_003688913.1 CDS PFREUD_20040 NC_014215.1 2160912 2162153 R glycosyl hydrolase complement(2160912..2162153) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283345 YP_003688914.1 CDS PFREUD_20050 NC_014215.1 2162195 2163715 R pyridine nucleotide-disulfide oxidoreductase complement(2162195..2163715) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283021 YP_003688915.1 CDS pgm/fbp NC_014215.1 2163831 2164490 R phosphoglycerate mutase complement(2163831..2164490) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283022 YP_003688916.1 CDS hemD NC_014215.1 2164545 2166161 R Hydroxymethylbilane <=> uroporphyrinogen-III + H(2)O; uroporphyrinogen-III synthase complement(2164545..2166161) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284061 YP_003688917.1 CDS PFREUD_20080 NC_014215.1 2166280 2166381 R hypothetical protein complement(2166280..2166381) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283687 YP_003688918.1 CDS PFREUD_20090 NC_014215.1 2166651 2167511 R L-proline + NAD+ <=> (S)-1-Pyrroline-5-carboxylate + NADH + H+; delta 1-pyrroline-5-carboxylate reductase complement(2166651..2167511) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283023 YP_003688919.1 CDS asd NC_014215.1 2167515 2168549 R L-aspartate 4-semialdehyde + phosphate + NADP+ = L-4-aspartyl phosphate + NADPH.; aspartate-semialdehyde dehydrogenase complement(2167515..2168549) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283024 YP_003688920.1 CDS PFREUD_20110 NC_014215.1 2168641 2169336 R hypothetical protein complement(2168641..2169336) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283356 YP_003688921.1 CDS PFREUD_20120 NC_014215.1 2169481 2170290 R hypothetical protein complement(2169481..2170290) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283025 YP_003688922.1 CDS PFREUD_20130 NC_014215.1 2170364 2171215 R endonuclease complement(2170364..2171215) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283026 YP_003688923.1 CDS PFREUD_20140 NC_014215.1 2171464 2172102 D hypothetical protein 2171464..2172102 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283027 YP_003688924.1 CDS sms NC_014215.1 2172218 2173612 D DNA repair protein 2172218..2173612 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283028 YP_003688925.1 CDS disA NC_014215.1 2173650 2174720 D Participates in a DNA-damage check-point that is active prior to asymmetric division when DNA is damaged.; DNA integrity scanning protein DisA 2173650..2174720 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284288 YP_003688926.1 CDS mutY NC_014215.1 2174800 2175678 D A/G-specific adenine glycosylase 2174800..2175678 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283501 YP_003688927.1 CDS PFREUD_20180 NC_014215.1 2175967 2176602 D ABC transporter 2175967..2176602 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283931 YP_003688928.1 CDS cbiO3 NC_014215.1 2176628 2178298 D locus ABC transporter PF #2140, 2141 et 2475; ABC transporter ATP-binding protein 2176628..2178298 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283029 YP_003688929.1 CDS cbiQ1 NC_014215.1 2178295 2179122 D cobalt ABC transporter permease 2178295..2179122 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283407 YP_003688930.1 CDS PFREUD_20210 NC_014215.1 2179133 2179714 D Chorismate + NH3 <=> Anthranilate + pyruvate + H2O; cobalt ABC transporter 2179133..2179714 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283409 YP_003688932.1 CDS aroD NC_014215.1 2179860 2180615 D 3-Dehydroquinate <=> 3-Dehydroshikimate + H2O; 3-dehydroquinate dehydratase 2179860..2180615 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283031 YP_003688933.1 CDS PFREUD_20240 NC_014215.1 2180612 2181298 D hypothetical protein 2180612..2181298 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283340 YP_003688934.1 CDS clpC NC_014215.1 2181449 2184025 R Belongs to the clpA/clpB family. ClpC subfamily. The protein has been identified by proteomics as a 99 kDa protein induced by heat.Several 90 to 100 kda clp chaperones are expressed as disctinct heat shock proteins; ATP-dependent Clp protease ATP-binding protein complement(2181449..2184025) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283032 YP_003688935.1 CDS PFREUD_20260 NC_014215.1 2184890 2185210 R Lsr2-like protein complement(2184890..2185210) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283422 YP_003688936.1 CDS folK NC_014215.1 2185820 2186365 R hydroxymethyldihydropteridine pyrophosphokinase complement(2185820..2186365) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283033 YP_003688937.1 CDS folB NC_014215.1 2186362 2186736 R 2-amino-4-hydroxy-6-(D-erythro-1,2, 3-trihydroxypropyl)-7, 8-dihydropteridine <=> glycolaldehyde + 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine; dihydroneopterin aldolase complement(2186362..2186736) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283571 YP_003688938.1 CDS folP2 NC_014215.1 2186883 2187749 R 2-amino-7, 8-dihydro-4-hydroxy-6-(diphosphooxymethyl)pteridine + 4-aminobenzoate <=> Pyrophosphate + dihydropteroate / 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine + 4-aminobenzoate <=> dihydropteroate + H2O; dihydropteroate synthase complement(2186883..2187749) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283567 YP_003688939.1 CDS PFREUD_20300 NC_014215.1 2187853 2188197 R GntR family transcriptional regulator complement(2187853..2188197) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283573 YP_003688940.1 CDS folE NC_014215.1 2188331 2189008 R catalyzes the conversion of GTP into dihydroneopterin triphosphate. The enzyme product is the precursor of tetrahydrofolate; GTP cyclohydrolase I complement(2188331..2189008) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283034 YP_003688941.1 CDS PFREUD_20320 NC_014215.1 2189059 2191503 R ATPase complement(2189059..2191503) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283570 YP_003688942.1 CDS hpt NC_014215.1 2191590 2192141 R Guanine and 6-mercaptopurine can replace hypoxanthine.; hypoxanthine phosphoribosyltransferase complement(2191590..2192141) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283035 YP_003688943.1 CDS tilS NC_014215.1 2192247 2193236 R tRNA(Ile)-lysidine synthetase complement(2192247..2193236) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283712 YP_003688944.1 CDS PFREUD_20350 NC_014215.1 2193236 2194327 R hypothetical protein complement(2193236..2194327) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284342 YP_003688945.1 CDS dac NC_014215.1 2194458 2195828 R Molecular function: serine carboxypeptidase activity; D-alanyl-D-alanine-carboxypeptidase complement(2194458..2195828) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283036 YP_003688946.1 CDS PFREUD_20370 NC_014215.1 2195890 2196447 D Pyrophosphate + H2O <=> 2 Orthophosphate; inorganic pyrophosphatase 2195890..2196447 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283472 YP_003688947.1 CDS PFREUD_20380 NC_014215.1 2196597 2197853 D hypothetical protein 2196597..2197853 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283037 YP_003688948.1 CDS sixA NC_014215.1 2197855 2198397 D phosphohistidine phosphatase 2197855..2198397 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283038 YP_003688949.1 CDS corA NC_014215.1 2198401 2199303 D CorA, Mg2+ and Co2+ transporters 2198401..2199303 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284281 YP_003688950.1 CDS PFREUD_20410 NC_014215.1 2199460 2200524 D hypothetical protein 2199460..2200524 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283444 YP_003688951.1 CDS PFREUD_20420 NC_014215.1 2200686 2202047 D ammonium transporter 2200686..2202047 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283039 YP_003688952.1 CDS glnB NC_014215.1 2202044 2202382 D In nitrogen-limiting conditions, when the ratio of Gln to 2-ketoglutarate decreases, P-II is uridylylated to P-II-UMP. P-II-UMP allows the deadenylation of glutamine synthetase (GS), thus activating the enzyme. Conversely, in nitrogen excess P-II is deuridylated and promotes the adenylation of GS. Homotrimer; nitrogen regulatory protein P-II 2202044..2202382 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283040 YP_003688953.1 CDS mao NC_014215.1 2203192 2204529 R RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2; flavin-containing amine oxidase complement(2203192..2204529) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283623 YP_003688955.1 CDS cycA1 NC_014215.1 2204723 2206174 R permease that is involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-serine/D-alanine/glycine transporter complement(2204723..2206174) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283041 YP_003688956.1 CDS PFREUD_20470 NC_014215.1 2206439 2207953 D hypothetical protein 2206439..2207953 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283451 YP_003688957.1 CDS PFREUD_20480 NC_014215.1 2207953 2208795 D ABC transporter ATP-binding protein 2207953..2208795 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283042 YP_003688959.1 CDS PFREUD_20510 NC_014215.1 2209103 2210152 R PSP1 domain-containing protein complement(2209103..2210152) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283045 YP_003688960.1 CDS PFREUD_20520 NC_014215.1 2210282 2211952 R hypothetical protein complement(2210282..2211952) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283046 YP_003688961.1 CDS dnaX NC_014215.1 2212100 2213482 R deoxynucleoside triphosphate + DNA <=> Pyrophosphate + DNA; DNA polymerase III subunit delta' complement(2212100..2213482) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283047 YP_003688962.1 CDS tmk NC_014215.1 2213726 2214364 R ATP + dTMP <=> ADP + dTDP and ATP + dUMP <=> ADP + dUDP; thymidylate kinase complement(2213726..2214364) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283519 YP_003688963.1 CDS PFREUD_20550 NC_014215.1 2214361 2215806 R hypothetical protein complement(2214361..2215806) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284344 YP_003688964.1 CDS topA NC_014215.1 2215850 2218636 R DNA topoisomerase I complement(2215850..2218636) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283048 YP_003688965.1 CDS PFREUD_20570 NC_014215.1 2219044 2220561 R transferase complement(2219044..2220561) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284413 YP_003688966.1 CDS PFREUD_20580 NC_014215.1 2220811 2223273 D helicase 2220811..2223273 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283049 YP_003688967.1 CDS dmsC NC_014215.1 2223270 2224274 R anaerobic dimethyl sulfoxide reductase subunit C complement(2223270..2224274) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283050 YP_003688968.1 CDS dmsB NC_014215.1 2224274 2224918 R electron transfer subunit of the terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds. Heterotrimeric enzyme composed of a catalytic heterodimer (DmsAB) and a membrane anchor protein (DmsC).; anaerobic dimethyl sulfoxide reductase subunit B complement(2224274..2224918) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283506 YP_003688969.1 CDS dmsA NC_014215.1 2224932 2227607 R anaerobic dimethyl sulfoxide reductase subunit A complement(2224932..2227607) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283505 YP_003688970.1 CDS PFREUD_20620 NC_014215.1 2227669 2228880 R hypothetical protein complement(2227669..2228880) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283504 YP_003688971.1 CDS torD NC_014215.1 2229096 2229974 R molecular chaperone TorD complement(2229096..2229974) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283051 YP_003688972.1 CDS PFREUD_20640 NC_014215.1 2230044 2230316 D hypothetical protein 2230044..2230316 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284414 YP_003688973.1 CDS PFREUD_20650 NC_014215.1 2230412 2230744 R hypothetical protein complement(2230412..2230744) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283052 YP_003688974.1 CDS PFREUD_20660 NC_014215.1 2230906 2231364 R hypothetical protein complement(2230906..2231364) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283053 YP_003688975.1 CDS PFREUD_20670 NC_014215.1 2231495 2231806 R hypothetical protein complement(2231495..2231806) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283054 YP_003688976.1 CDS PFREUD_20680 NC_014215.1 2231965 2232510 D microcin resistance protein 2231965..2232510 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283055 YP_003688977.1 CDS PFREUD_20690 NC_014215.1 2232705 2233448 R hypothetical protein complement(2232705..2233448) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283056 YP_003688978.1 CDS PFREUD_20700 NC_014215.1 2233445 2234242 R hypothetical protein complement(2233445..2234242) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283057 YP_003688979.1 CDS PFREUD_20710 NC_014215.1 2234239 2235390 R ype II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria.; secretory protein complement(2234239..2235390) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283058 YP_003688980.1 CDS PFREUD_20720 NC_014215.1 2235377 2236396 R hypothetical protein complement(2235377..2236396) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283059 YP_003688981.1 CDS PFREUD_20730 NC_014215.1 2236995 2237744 D methyltransferase 2236995..2237744 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283060 YP_003688982.1 CDS NhaA NC_014215.1 2238082 2239305 D Na_H_antiport_1, Na+/H+ antiporter 1. This family contains a number of bacterial Na+/H+ antiporter 1 proteins. These are integral membrane proteins that catalyse the exchange of H+ for Na+ in a manner that is highly dependent on the pH.; sodium:proton antiporter 2238082..2239305 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283061 YP_003688983.1 CDS PFREUD_20750 NC_014215.1 2239640 2240113 D hypothetical protein 2239640..2240113 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283948 YP_003688984.1 CDS PFREUD_20760 NC_014215.1 2240229 2240456 D hypothetical protein 2240229..2240456 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283062 YP_003688985.1 CDS PFREUD_20770 NC_014215.1 2240572 2241333 R hypothetical protein complement(2240572..2241333) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283063 YP_003688986.1 CDS PFREUD_20780 NC_014215.1 2241568 2244057 R Cation-transporting ATPase complement(2241568..2244057) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283064 YP_003688987.1 CDS PFREUD_20790 NC_014215.1 2244168 2244380 R heavy metal transport/detoxification protein complement(2244168..2244380) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283065 YP_003688988.1 CDS PFREUD_20800 NC_014215.1 2244514 2244927 R hypothetical protein complement(2244514..2244927) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283066 YP_003688989.1 CDS dnaB NC_014215.1 2245833 2247188 D Replicative DNA helicase 2245833..2247188 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283067 YP_003688990.1 CDS PFREUD_20820 NC_014215.1 2247317 2247847 R hypothetical protein complement(2247317..2247847) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283508 YP_003688991.1 CDS lmrB NC_014215.1 2247952 2249397 D Proton-dependent transporter. May mediate the efflux of lincomycin; lincomycin ABC transporter permease 2247952..2249397 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283068 YP_003688992.1 CDS namA NC_014215.1 2249444 2250556 R Acceptor + NADPH + H+ <=> Reduced acceptor + NADP+; NADH-dependent flavin oxidoreductase complement(2249444..2250556) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283832 YP_003688993.1 CDS PFREUD_20850 NC_014215.1 2250711 2251529 D methyltransferase 2250711..2251529 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283942 YP_003688994.1 CDS PFREUD_20860 NC_014215.1 2251612 2252181 R hypothetical protein complement(2251612..2252181) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283069 YP_003688995.1 CDS PFREUD_20870 NC_014215.1 2252410 2252568 D hypothetical protein 2252410..2252568 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283070 YP_003688996.1 CDS PFREUD_20880 NC_014215.1 2252700 2253032 D hypothetical protein 2252700..2253032 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283071 YP_003688997.1 CDS PFREUD_20890 NC_014215.1 2253221 2254453 D hypothetical protein 2253221..2254453 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283072 YP_003688998.1 CDS thiC NC_014215.1 2254550 2256454 R 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-methyl-5-(2-phosphoethyl)-thiazole <=> Pyrophosphate + Thiamin monophosphate; thiamine-phosphate diphosphorylase complement(2254550..2256454) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283073 YP_003688999.1 CDS slgT NC_014215.1 2256882 2258561 D Actively transports glucose into cells by Na(+) cotransport; Na+/galactose cotransporter / Sodium/glucose cotransporter 2256882..2258561 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284328 YP_003689000.1 CDS PFREUD_20920 NC_014215.1 2258583 2259083 D hypothetical protein 2258583..2259083 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284282 YP_003689001.1 CDS PFREUD_20930 NC_014215.1 2259290 2261389 R Regulator of chromosome condensation complement(2259290..2261389) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283074 YP_003689002.1 CDS sirR NC_014215.1 2261547 2262224 R Iron dependent repressor complement(2261547..2262224) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283075 YP_003689003.1 CDS mntH NC_014215.1 2262449 2263864 D H(+)-stimulated, highly selective, manganese uptake system; Mn2+ and Fe2+ transporter 2262449..2263864 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284280 YP_003689005.1 CDS PFREUD_20970 NC_014215.1 2264314 2264970 R hypothetical protein complement(2264314..2264970) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283076 YP_003689006.1 CDS PFREUD_20980 NC_014215.1 2264967 2265938 R VWA, von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.; von Willebrand factor A complement(2264967..2265938) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283077 YP_003689007.1 CDS PFREUD_20990 NC_014215.1 2265920 2266054 R hypothetical protein complement(2265920..2266054) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283078 YP_003689008.1 CDS tnpA NC_014215.1 2266080 2267387 R transposase complement(2266080..2267387) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283079 YP_003689009.1 CDS PFREUD_21000 NC_014215.1 2267354 2267428 R hypothetical protein complement(2267354..2267428) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284382 YP_003689010.1 CDS PFREUD_21010 NC_014215.1 2267516 2268328 D AbiF, Abortive infection bacteriophage resistance protein [Defense mechanisms].; Abortive infection bacteriophage resistance protein 2267516..2268328 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283080 YP_003689012.1 CDS PFREUD_21040 NC_014215.1 2271319 2271402 D hypothetical protein 2271319..2271402 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283083 YP_003689013.1 CDS PFREUD_21050 NC_014215.1 2271477 2272322 D hypothetical protein 2271477..2272322 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283084 YP_003689014.1 CDS PFREUD_21060 NC_014215.1 2272362 2272922 R hypothetical protein complement(2272362..2272922) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283085 YP_003689015.1 CDS tnpB NC_014215.1 2273118 2274005 R transposase complement(2273118..2274005) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283086 YP_003689016.1 CDS TnpD NC_014215.1 2274038 2274382 R transposase IS3/IS911 complement(2274038..2274382) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284400 YP_003689017.1 CDS PFREUD_21070 NC_014215.1 2274405 2275112 R hypothetical protein complement(2274405..2275112) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284412 YP_003689018.1 CDS PFREUD_21080 NC_014215.1 2275270 2275779 R hypothetical protein complement(2275270..2275779) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283087 YP_003689019.1 CDS PFREUD_21090 NC_014215.1 2275868 2275942 D hypothetical protein 2275868..2275942 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283088 YP_003689020.1 CDS tnpA NC_014215.1 2275909 2277216 D transposase 2275909..2277216 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283089 YP_003689021.1 CDS PFREUD_21100 NC_014215.1 2277227 2277478 D hypothetical protein 2277227..2277478 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284383 YP_003689022.1 CDS PFREUD_24960 NC_014215.1 2277795 2278799 D integrase 2277795..2278799 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283090 YP_003689023.1 CDS PFREUD_21110 NC_014215.1 2278861 2280123 D hypothetical protein 2278861..2280123 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283283 YP_003689024.1 CDS PFREUD_21120 NC_014215.1 2280330 2280824 R GNAT family acetyltransferase complement(2280330..2280824) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283091 YP_003689025.1 CDS PFREUD_21130 NC_014215.1 2280835 2281311 R Glyoxalase/bleomycin resistance protein/dioxygenase complement(2280835..2281311) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283092 YP_003689026.1 CDS tniA NC_014215.1 2281505 2283205 R TniA protein complement(2281505..2283205) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283093 YP_003689027.1 CDS PFREUD_21140 NC_014215.1 2283449 2285947 D Helicase 2283449..2285947 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284345 YP_003689028.1 CDS PFREUD_21150 NC_014215.1 2285961 2286251 R hypothetical protein complement(2285961..2286251) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283094 YP_003689029.1 CDS PFREUD_21160 NC_014215.1 2286330 2286842 D hypothetical protein 2286330..2286842 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283095 YP_003689030.1 CDS pkn NC_014215.1 2286947 2288119 R ATP + protein <=> ADP + phosphoprotein; serine/threonine protein kinase complement(2286947..2288119) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283096 YP_003689032.1 CDS int NC_014215.1 2288203 2288796 R integrase complement(2288203..2288796) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283097 YP_003689033.1 CDS PFREUD_21200 NC_014215.1 2289027 2289368 D hypothetical protein 2289027..2289368 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283754 YP_003689034.1 CDS PFREUD_21210 NC_014215.1 2289411 2289695 R hypothetical protein complement(2289411..2289695) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283098 YP_003689035.1 CDS PFREUD_21220 NC_014215.1 2290059 2290211 D hypothetical protein 2290059..2290211 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283099 YP_003689036.1 CDS PFREUD_21230 NC_014215.1 2290195 2290749 D hypothetical protein 2290195..2290749 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283100 YP_003689037.1 CDS umuD NC_014215.1 2290933 2291367 D Involved in UV protection and mutation. Essential for induced (or SOS) mutagenesis.; peptidase S24 2290933..2291367 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283101 YP_003689038.1 CDS umuC/rumB NC_014215.1 2291343 2292662 D deoxynucleoside triphosphate + DNA <=> Pyrophosphate + DNA; DNA-directed DNA polymerase 2291343..2292662 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284455 YP_003689039.1 CDS PFREUD_21260 NC_014215.1 2292744 2293154 R hypothetical protein complement(2292744..2293154) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284454 YP_003689040.1 CDS PFREUD_21270 NC_014215.1 2293151 2293375 R hypothetical protein complement(2293151..2293375) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283102 YP_003689041.1 CDS PFREUD_21280 NC_014215.1 2293377 2293445 R hypothetical protein complement(2293377..2293445) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283103 YP_003689042.1 CDS PFREUD_21290 NC_014215.1 2293462 2294127 R hypothetical protein complement(2293462..2294127) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283104 YP_003689043.1 CDS dnaG2 NC_014215.1 2294612 2295475 D DNA primase 2294612..2295475 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283105 YP_003689044.1 CDS PFREUD_21310 NC_014215.1 2295561 2295749 D hypothetical protein 2295561..2295749 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283512 YP_003689045.1 CDS int NC_014215.1 2295634 2297052 D integrase 2295634..2297052 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283106 YP_003689046.1 CDS merA NC_014215.1 2297202 2298557 D Hg + NADP+ + H+ <=> Hg2+ + NADPH; pyridine nucleotide-disulfide oxidoreductase 2297202..2298557 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283775 YP_003689047.1 CDS int NC_014215.1 2299071 2299979 R integrase complement(2299071..2299979) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283872 YP_003689048.1 CDS tnpC NC_014215.1 2299976 2300281 R transposase IS3/IS911 complement(2299976..2300281) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283776 YP_003689049.1 CDS PFREUD_21330 NC_014215.1 2300320 2300601 R hypothetical protein complement(2300320..2300601) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284405 YP_003689050.1 CDS abiF NC_014215.1 2300623 2301057 D Abortive infection bacteriophage resistance protein 2300623..2301057 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283107 YP_003689051.1 CDS PFREUD_21350 NC_014215.1 2301078 2301374 D hypothetical protein 2301078..2301374 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284384 YP_003689052.1 CDS PFREUD_21360 NC_014215.1 2302258 2302887 D hypothetical protein 2302258..2302887 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283108 YP_003689053.1 CDS PFREUD_21370 NC_014215.1 2302968 2303159 D hypothetical protein 2302968..2303159 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283109 YP_003689054.1 CDS hsdM2 NC_014215.1 2303116 2303385 D type I restriction-modification system DNA methylase 2303116..2303385 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283110 YP_003689055.1 CDS modB NC_014215.1 2303386 2305386 D Biological process: DNA methylation, N-methyltransferase activity. S-adenosyl-L-methionine + DNA adenine <=> S-adenosyl-L-homocysteine + DNA 6-methylaminopurine; DNA methylase 2303386..2305386 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283720 YP_003689056.1 CDS PFREUD_21400 NC_014215.1 2305386 2307959 D highly similar to Q6A7B6_PROAC from Propionibacterium acnes; type III restriction enzyme 2305386..2307959 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283898 YP_003689057.1 CDS PFREUD_21410 NC_014215.1 2308128 2308763 D hypothetical protein 2308128..2308763 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283111 YP_003689058.1 CDS PFREUD_21420 NC_014215.1 2308869 2309969 D hypothetical protein 2308869..2309969 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283112 YP_003689059.1 CDS citT NC_014215.1 2310271 2311779 D malate transporter yflS 2310271..2311779 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283113 YP_003689060.1 CDS ribH NC_014215.1 2311936 2312358 R 2 6,7-Dimethyl-8-(1-D-ribityl)lumazine <=> riboflavin + 4-(1-D-Ribitylamino)-5-amino-2,6-dihydroxypyrimidine; 6,7-dimethyl-8-ribityllumazine synthase complement(2311936..2312358) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283419 YP_003689061.1 CDS ribAB NC_014215.1 2312400 2313869 R GTP + 3 H2O <=> formate + 2,5-diamino-6-(5p-phosphoribosylamino)-4-pyrimidineone + Pyrophosphate; GTP cyclohydrolase II complement(2312400..2313869) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284178 YP_003689062.1 CDS ribC NC_014215.1 2313866 2314528 R 2 6,7-Dimethyl-8-(1-D-ribityl)lumazine <=> riboflavin + 4-(1-D-Ribitylamino)-5-amino-2,6-dihydroxypyrimidine; riboflavin synthase subunit alpha complement(2313866..2314528) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284174 YP_003689063.1 CDS ribD NC_014215.1 2314618 2315838 R 2, 5-diamino-6-(5-phosphoribosylamino)-4-pyrimidineone + H2O <=> 5-amino-6-(5-phosphoribosylamino)uracil + NH3 / 5-amino-6-(5-phosphoribitylamino)uracil + NADP+ <=> 5-amino-6-(5-phosphoribosylamino)uracil + NADPH + H+; 5-amino-6-(5-phosphoribosylamino)uracil reductase complement(2314618..2315838) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284175 YP_003689064.1 CDS PFREUD_21480 NC_014215.1 2316239 2316598 D hypothetical protein 2316239..2316598 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284176 YP_003689065.1 CDS PFREUD_21490 NC_014215.1 2316656 2317138 D hypothetical protein 2316656..2317138 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283114 YP_003689066.1 CDS malQ2 NC_014215.1 2317209 2319164 D Amylose <=> 1,4-alpha-D-glucan; 4-alpha-glucanotransferase 2317209..2319164 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283115 YP_003689067.1 CDS PFREUD_21510 NC_014215.1 2319297 2319476 D hypothetical protein 2319297..2319476 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283849 YP_003689068.1 CDS PFREUD_21520 NC_014215.1 2319776 2320093 R hypothetical protein complement(2319776..2320093) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283116 YP_003689069.1 CDS pntB NC_014215.1 2320424 2321836 R NADH + acceptor <=> NAD(+) + reduced acceptor; NADH dehydrogenase complement(2320424..2321836) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283117 YP_003689070.1 CDS pntA NC_014215.1 2321843 2323396 R NADPH + NAD+ <=> NADP+ + NADH; NAD(P)(+) transhydrogenase complement(2321843..2323396) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284089 YP_003689071.1 CDS PFREUD_21550 NC_014215.1 2323755 2324789 D transcriptional regulator 2323755..2324789 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284088 YP_003689072.1 CDS drrA NC_014215.1 2325308 2326378 D DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein.; Daunorubicin resistance ATP-binding protein DrrA 2325308..2326378 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283118 YP_003689073.1 CDS PFREUD_21570 NC_014215.1 2326375 2327205 D ABC transporter permease 2326375..2327205 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283523 YP_003689074.1 CDS cysA NC_014215.1 2327518 2328570 R sulfate/thiosulfate import ATP-binding protein complement(2327518..2328570) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283119 YP_003689075.1 CDS cysW NC_014215.1 2328567 2329355 R sulfate transport system permease CysW complement(2328567..2329355) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283460 YP_003689076.1 CDS cysT NC_014215.1 2329366 2330430 R sulfate ABC transporter permease complement(2329366..2330430) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283469 YP_003689077.1 CDS PFREUD_21610 NC_014215.1 2330427 2331461 R sulfate-binding protein complement(2330427..2331461) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283468 YP_003689078.1 CDS nirA2/sir2 NC_014215.1 2332280 2334127 D Hydrogen sulfide + 6 oxidized ferredoxin + 3 H2O = sulfite + 6 reduced ferredoxin + 6 H+.Binds 1 siroheme per subunit Binds 1 4Fe-4S cluster per subunit; Sulfite reductase [ferredoxin] 2332280..2334127 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283120 YP_003689079.1 CDS cysH NC_014215.1 2334091 2334873 D phosphoadenosine phosphosulfate reductase 2334091..2334873 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283953 YP_003689080.1 CDS mmcV/cysD NC_014215.1 2334900 2335967 D ATP + sulfate = diphosphate + adenylyl sulfate; sulfate adenylyltransferase 2334900..2335967 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283463 YP_003689081.1 CDS cysN NC_014215.1 2335970 2337319 D sulfate adenylyltransferase 2335970..2337319 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283889 YP_003689082.1 CDS rpiB3 NC_014215.1 2337652 2338134 R ribose-5-phosphate isomerase 3 complement(2337652..2338134) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283465 YP_003689083.1 CDS PFREUD_21670 NC_014215.1 2338469 2339149 R methylase complement(2338469..2339149) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284198 YP_003689084.1 CDS PFREUD_21680 NC_014215.1 2339160 2339957 R hypothetical protein complement(2339160..2339957) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283121 YP_003689085.1 CDS nadB2 NC_014215.1 2340568 2342157 D L-aspartate oxidase 2340568..2342157 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283122 YP_003689086.1 CDS PFREUD_21700 NC_014215.1 2342208 2346584 R hypothetical protein complement(2342208..2346584) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283936 YP_003689087.1 CDS narJ NC_014215.1 2348069 2348893 D Nitrite + Acceptor <=> Nitrate + Reduced acceptor; Nitrate reductase subunit delta 2348069..2348893 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283943 YP_003689088.1 CDS PFREUD_21740 NC_014215.1 2348718 2348912 D hypothetical protein 2348718..2348912 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283944 YP_003689089.1 CDS moaE2 NC_014215.1 2350901 2351320 D Converts molybdopterin precursor Z into molybdopterin. This requires the incorporation of two sulfur atoms into precursor Z to generate a dithiolene group, Heterodimer of 2 moaD subunits and 2 moaE subunits; Molybdopterin synthase MoaE, Molybdenum cofactor biosynthesis protein E 2 2350901..2351320 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283125 YP_003689090.1 CDS moeZ NC_014215.1 2351320 2352195 D involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism].; Molybdenum cofactor biosynthesis protein 2351320..2352195 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283897 YP_003689091.1 CDS PFREUD_21780 NC_014215.1 2352098 2352265 D hypothetical protein 2352098..2352265 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283903 YP_003689092.1 CDS moeA2 NC_014215.1 2352252 2353682 D Involved in the biosynthesis of a demolybdo-cofactor (molybdopterin), necessary for molybdo-enzymes. Seems to be involved in a step of activation of molybdenum in the form of thiomolybdenum.; molybdenum cofactor biosynthesis protein 2352252..2353682 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283126 YP_003689093.1 CDS moaC NC_014215.1 2353621 2354223 D Together with moaA, is involved in the conversion of a guanosine derivative (5-GTP) into molybdopterin precursor Z; Molybdenum cofactor biosynthesis protein 2353621..2354223 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283902 YP_003689094.1 CDS moaB NC_014215.1 2354282 2354866 R Mo-molybdopterin cofactor biosynthetic process; Molybdenum cofactor biosynthesis protein complement(2354282..2354866) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283896 YP_003689095.1 CDS hit NC_014215.1 2354870 2355319 R histidine triad (HIT) protein complement(2354870..2355319) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283895 YP_003689096.1 CDS PFREUD_21830 NC_014215.1 2356237 2357013 R hypothetical protein complement(2356237..2357013) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283710 YP_003689097.1 CDS dadA2 NC_014215.1 2357010 2358248 R D-amino acid + H2O + Acceptor <=> 2-Oxo acid + NH3 + Reduced acceptor; DadA, glycine/D-amino acid oxidases complement(2357010..2358248) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283127 YP_003689098.1 CDS PFREUD_21850 NC_014215.1 2358260 2358643 R translation initiation inhibitor involved in amino acid or purine metabolism complement(2358260..2358643) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283474 YP_003689099.1 CDS PFREUD_21860 NC_014215.1 2358651 2359454 R polar amino acid ABC transporter ATP-binding protein complement(2358651..2359454) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283128 YP_003689100.1 CDS PFREUD_21870 NC_014215.1 2359524 2360384 R polar amino acid ABC transporter binding protein component complement(2359524..2360384) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283129 YP_003689101.1 CDS PFREUD_21880 NC_014215.1 2360451 2361107 R Polar amino acid ABC transporter inner membrane subunit complement(2360451..2361107) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283130 YP_003689102.1 CDS PFREUD_21890 NC_014215.1 2361104 2361742 R polar amino acid ABC transporter permease complement(2361104..2361742) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283131 YP_003689103.1 CDS adh NC_014215.1 2361859 2362905 R alcohol dehydrogenase complement(2361859..2362905) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283132 YP_003689104.1 CDS PFREUD_21910 NC_014215.1 2362909 2363988 R hydroxyacid dehydrogenase complement(2362909..2363988) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283299 YP_003689105.1 CDS PFREUD_21920 NC_014215.1 2363985 2365319 R aminotransferase complement(2363985..2365319) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283133 YP_003689106.1 CDS PFREUD_21930 NC_014215.1 2365499 2366995 D translation regulator 2365499..2366995 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283134 YP_003689107.1 CDS PFREUD_21940 NC_014215.1 2367518 2367646 D hypothetical protein 2367518..2367646 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283135 YP_003689108.1 CDS PFREUD_21950 NC_014215.1 2367733 2367840 R hypothetical protein complement(2367733..2367840) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283136 YP_003689109.1 CDS PFREUD_21960 NC_014215.1 2367862 2369616 R hypothetical protein complement(2367862..2369616) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283137 YP_003689110.1 CDS PFREUD_21970 NC_014215.1 2369990 2371399 D two component sensor kinase 2369990..2371399 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283138 YP_003689111.1 CDS PFREUD_21980 NC_014215.1 2371433 2372095 D two component transcriptional regulator, LuxR family 2371433..2372095 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283139 YP_003689112.1 CDS int NC_014215.1 2372346 2373341 D integrase 2372346..2373341 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283140 YP_003689113.1 CDS PFREUD_21990 NC_014215.1 2373544 2374509 D hypothetical protein 2373544..2374509 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283777 YP_003689114.1 CDS PFREUD_22000 NC_014215.1 2374506 2374661 D hypothetical protein 2374506..2374661 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283141 YP_003689115.1 CDS PFREUD_22010 NC_014215.1 2374754 2374819 R hypothetical protein complement(2374754..2374819) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283142 YP_003689116.1 CDS PFREUD_22020 NC_014215.1 2374882 2376270 D major facilitator super family protein 2374882..2376270 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283143 YP_003689117.1 CDS PFREUD_22030 NC_014215.1 2376270 2376860 D membrane multiple antibiotic resistance (MarC)-related protein 2376270..2376860 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283144 YP_003689118.1 CDS PFREUD_22040 NC_014215.1 2376871 2380563 R hypothetical protein complement(2376871..2380563) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283145 YP_003689119.1 CDS PFREUD_22050 NC_014215.1 2380560 2380958 R hypothetical protein complement(2380560..2380958) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283146 YP_003689120.1 CDS PFREUD_22060 NC_014215.1 2381183 2381605 R hypothetical protein complement(2381183..2381605) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283147 YP_003689121.1 CDS PFREUD_22070 NC_014215.1 2381580 2381804 R hypothetical protein complement(2381580..2381804) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283148 YP_003689122.1 CDS PFREUD_22080 NC_014215.1 2381889 2382794 R hypothetical protein complement(2381889..2382794) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283149 YP_003689123.1 CDS PFREUD_22090 NC_014215.1 2382787 2383680 R hypothetical protein complement(2382787..2383680) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283150 YP_003689124.1 CDS PFREUD_22100 NC_014215.1 2383677 2385452 R type II secretion system protein E complement(2383677..2385452) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283151 YP_003689125.1 CDS PFREUD_22110 NC_014215.1 2385449 2386486 R hypothetical protein complement(2385449..2386486) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283152 YP_003689126.1 CDS PFREUD_22120 NC_014215.1 2386486 2387133 R hypothetical protein complement(2386486..2387133) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283153 YP_003689127.1 CDS PFREUD_22130 NC_014215.1 2387740 2388429 R hypothetical protein complement(2387740..2388429) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283154 YP_003689128.1 CDS PFREUD_22140 NC_014215.1 2388609 2389217 D TetR family transcriptional regulator 2388609..2389217 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283155 YP_003689129.1 CDS PFREUD_22150 NC_014215.1 2389363 2389587 D hypothetical protein 2389363..2389587 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283156 YP_003689130.1 CDS PFREUD_22160 NC_014215.1 2389660 2390469 R metal binding protein complement(2389660..2390469) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283157 YP_003689131.1 CDS PFREUD_22170 NC_014215.1 2390525 2391130 R hypothetical protein complement(2390525..2391130) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283158 YP_003689132.1 CDS PFREUD_22180 NC_014215.1 2391249 2391740 R hypothetical protein complement(2391249..2391740) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283159 YP_003689133.1 CDS cadA NC_014215.1 2391792 2393906 R ATPase P complement(2391792..2393906) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283160 YP_003689134.1 CDS arsR7 NC_014215.1 2393903 2394253 R arsenic resistance; ArsR family transcriptional regulator complement(2393903..2394253) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283387 YP_003689135.1 CDS PFREUD_22210 NC_014215.1 2394439 2394927 D acetyltransferase 2394439..2394927 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283354 YP_003689136.1 CDS PFREUD_22220 NC_014215.1 2394998 2395552 R hypothetical protein complement(2394998..2395552) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283161 YP_003689137.1 CDS merR2 NC_014215.1 2395635 2395979 R promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MERR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site.; MerR family transcriptional regulator complement(2395635..2395979) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283162 YP_003689138.1 CDS PFREUD_22240 NC_014215.1 2396074 2397252 D multidrug ABC transporter permease 2396074..2397252 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283874 YP_003689139.1 CDS guA NC_014215.1 2397278 2397967 D ATP + xanthosine 5 prime-phosphate + L-glutamine + H2O = AMP + diphosphate + GMP + L-glutamate ; inhibiteur Psicofuranin; glutamine amidotransferase class I 2397278..2397967 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283163 YP_003689140.1 CDS PFREUD_22260 NC_014215.1 2398051 2399031 D ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate.; ribose-phosphate pyrophosphokinase 2398051..2399031 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283673 YP_003689141.1 CDS PFREUD_22270 NC_014215.1 2399149 2399760 R hypothetical protein complement(2399149..2399760) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283164 YP_003689142.1 CDS PFREUD_22280 NC_014215.1 2399931 2400749 R LmbE-like protein complement(2399931..2400749) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283165 YP_003689143.1 CDS PFREUD_22290 NC_014215.1 2400746 2401975 R group 1 glycosyl transferase complement(2400746..2401975) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283166 YP_003689144.1 CDS PFREUD_22300 NC_014215.1 2402148 2403005 D hypothetical protein 2402148..2403005 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283167 YP_003689145.1 CDS PFREUD_22310 NC_014215.1 2403006 2404091 R hypothetical protein complement(2403006..2404091) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283168 YP_003689146.1 CDS PFREUD_22320 NC_014215.1 2404084 2404893 R hypothetical protein complement(2404084..2404893) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283169 YP_003689147.1 CDS PFREUD_22330 NC_014215.1 2405032 2405928 D aldose 1-epimerase 2405032..2405928 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283170 YP_003689148.1 CDS uvrA4 NC_014215.1 2405996 2408284 R Excinuclease ATPase subunit UvrA complement(2405996..2408284) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283171 YP_003689149.1 CDS PFREUD_22350 NC_014215.1 2408461 2408772 D This family of domains are likely to bind to zinc ions. They contain many conserved cysteine and histidine residues.; Zinc finger protein 2408461..2408772 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284466 YP_003689150.1 CDS tkt NC_014215.1 2409053 2411119 R transketolase complement(2409053..2411119) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283172 YP_003689151.1 CDS araB NC_014215.1 2411238 2412986 R ATP + Ribulose <=> ADP + D-Ribulose 5-phosphate; L-ribulokinase complement(2411238..2412986) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284343 YP_003689152.1 CDS araM NC_014215.1 2413224 2414600 R L-arabinose utilization protein complement(2413224..2414600) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283320 YP_003689154.1 CDS PFREUD_22400 NC_014215.1 2414613 2416187 R carbohydrate kinase complement(2414613..2416187) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283173 YP_003689155.1 CDS araL NC_014215.1 2416219 2417091 R arabinose operon; L-arabinose operon protein, hydrolase complement(2416219..2417091) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283321 YP_003689156.1 CDS PFREUD_22420 NC_014215.1 2417151 2418230 R signal peptide (SignalP) transmembrane (TM HMM); hypothetical protein complement(2417151..2418230) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283326 YP_003689157.1 CDS rpiB2 NC_014215.1 2418775 2419263 R ribose-5-phosphate isomerase 2 complement(2418775..2419263) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283174 YP_003689158.1 CDS PFREUD_22440 NC_014215.1 2420082 2420765 D Short subunit dehydrogenase 2420082..2420765 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284197 YP_003689159.1 CDS deoR3 NC_014215.1 2420974 2421804 R transcription regulation of arabinose/xylulose/ribulose operon ?; regulatory protein, DeoR family complement(2420974..2421804) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283175 YP_003689160.1 CDS tpi2 NC_014215.1 2421966 2422718 R D-glyceraldehyde 3-phosphate = glycerone phosphate, homodimer; triosephosphate isomerase complement(2421966..2422718) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283489 YP_003689161.1 CDS dhaK/dhaL NC_014215.1 2422793 2424511 R dihydroxyacetone kinase complement(2422793..2424511) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284416 YP_003689162.1 CDS PFREUD_22480 NC_014215.1 2424770 2425489 D GntR family transcriptional regulator 2424770..2425489 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283495 YP_003689163.1 CDS PFREUD_22490 NC_014215.1 2425528 2426835 R sugar ABC transporter permease complement(2425528..2426835) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283176 YP_003689164.1 CDS PFREUD_22500 NC_014215.1 2426810 2427535 R proteins in this family are thought to be cyclase enzymes. They are found in proteins involved in antibiotic synthesis. However they are also found in organisms that do not make antibiotics pointing to a wider role for these proteins. The proteins contain a conserved motif HXGTHXDXPXH that is likely to form part of the active site.; cyclase complement(2426810..2427535) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283177 YP_003689165.1 CDS PFREUD_22510 NC_014215.1 2427675 2428319 R amidohydrolase complement(2427675..2428319) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283178 YP_003689166.1 CDS tnpA NC_014215.1 2428316 2429662 R transposase complement(2428316..2429662) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283179 YP_003689167.1 CDS PFREUD_22550 NC_014215.1 2431359 2431838 D hypothetical protein 2431359..2431838 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283182 YP_003689168.1 CDS int NC_014215.1 2432234 2433391 D integrase 2432234..2433391 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283183 YP_003689169.1 CDS PFREUD_22570 NC_014215.1 2433528 2433695 R hypothetical protein complement(2433528..2433695) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283755 YP_003689170.1 CDS PFREUD_22580 NC_014215.1 2433667 2433843 R hypothetical protein complement(2433667..2433843) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283184 YP_003689171.1 CDS PFREUD_22590 NC_014215.1 2434132 2434416 D hypothetical protein 2434132..2434416 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283185 YP_003689172.1 CDS PFREUD_22600 NC_014215.1 2434490 2434657 D hypothetical protein 2434490..2434657 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283186 YP_003689173.1 CDS int NC_014215.1 2435768 2436292 R phage integrase/recombinase complement(2435768..2436292) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283757 YP_003689174.1 CDS int NC_014215.1 2436696 2437637 R phage integrase:phage integrase, N-terminal SAM-like complement(2436696..2437637) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283759 YP_003689175.1 CDS PFREUD_22660 NC_014215.1 2438221 2438523 D hypothetical protein 2438221..2438523 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283760 YP_003689176.1 CDS PFREUD_22670 NC_014215.1 2438754 2439098 R hypothetical protein complement(2438754..2439098) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283188 YP_003689177.1 CDS glgX NC_014215.1 2439262 2441400 D glycogen debranching enzyme activity, hydrolase activity, hydrolyzing O-glycosyl compounds; glycogen debranching protein 2439262..2441400 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283189 YP_003689178.1 CDS PFREUD_22690 NC_014215.1 2441470 2441898 D hypothetical protein 2441470..2441898 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283617 YP_003689179.1 CDS PFREUD_22700 NC_014215.1 2441908 2442381 D hypothetical protein 2441908..2442381 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283190 YP_003689180.1 CDS PFREUD_22710 NC_014215.1 2442515 2442853 R hypothetical protein complement(2442515..2442853) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283191 YP_003689181.1 CDS int NC_014215.1 2442879 2443682 R integrase complement(2442879..2443682) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283192 YP_003689182.1 CDS tnpA NC_014215.1 2443745 2444029 R transposase IS3/IS911 complement(2443745..2444029) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283778 YP_003689183.1 CDS tnpA NC_014215.1 2444189 2445142 D transposase 2444189..2445142 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284386 YP_003689184.1 CDS PFREUD_22720 NC_014215.1 2445081 2445533 D hypothetical protein 2445081..2445533 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284387 YP_003689185.1 CDS int NC_014215.1 2445495 2446538 R integrase core domain. integrase mediates integration of a DNA copy of the viral genome into the host chromosome.; integrase complement(2445495..2446538) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283193 YP_003689187.1 CDS tnpA NC_014215.1 2446566 2447081 R transposase complement(2446566..2447081) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283194 YP_003689188.1 CDS PFREUD_22740 NC_014215.1 2447048 2447122 R hypothetical protein complement(2447048..2447122) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284388 YP_003689189.1 CDS gin NC_014215.1 2447287 2447868 R This protein catalyzes the inversion of a 3000-bp segment of phage DNA. The inversion results in a modification of the 3prime-end of the tail fiber gene and alters the host specificity.; resolvase complement(2447287..2447868) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283195 YP_003689190.1 CDS PFREUD_22760 NC_014215.1 2447865 2448644 R hypothetical protein complement(2447865..2448644) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283610 YP_003689191.1 CDS PFREUD_22770 NC_014215.1 2448641 2448973 R transcriptional regulator complement(2448641..2448973) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283196 YP_003689192.1 CDS hsp20 NC_014215.1 2449336 2449815 D Belongs to the small heat shock protein (HSP20) family.These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterized by the presence of a conserved C-terminal domain of about 100 residues.; molecular chaperone Hsp20 2449336..2449815 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283197 YP_003689193.1 CDS hsp20 NC_014215.1 2450068 2450532 D Belongs to the small heat shock protein (HSP20) family.These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterized by the presence of a conserved C-terminal domain of about 100 residues.; molecular chaperone Hsp20 2450068..2450532 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283724 YP_003689194.1 CDS kup NC_014215.1 2450689 2452566 R Potassium transport system protein complement(2450689..2452566) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283726 YP_003689195.1 CDS PFREUD_22810 NC_014215.1 2452756 2452950 R hypothetical protein complement(2452756..2452950) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283804 YP_003689196.1 CDS tnpA NC_014215.1 2452889 2454196 R transposase complement(2452889..2454196) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283198 YP_003689197.1 CDS gudP NC_014215.1 2454679 2455968 R Uptake of D-glucarate; D-galactonate transporter complement(2454679..2455968) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283199 YP_003689198.1 CDS PFREUD_22840 NC_014215.1 2456195 2457106 R hexulose-6-phosphate isomerase complement(2456195..2457106) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283678 YP_003689199.1 CDS gntP NC_014215.1 2457220 2458563 R gluconate transporter complement(2457220..2458563) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283200 YP_003689200.1 CDS pdxA2 NC_014215.1 2458569 2459636 R O-phospho-4-hydroxy-L-threonine + NAD+ <=> 2-amino-3-oxo-4-phosphonooxybutyrate + NADH + H+ (Cofactor biosynthesis; pyridoxine 5-phosphate biosynthesis; pyridoxine 5-phosphate from D-erythrose 4-phosphate: step 4/5.); 4-hydroxythreonine-4-phosphate dehydrogenase complement(2458569..2459636) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283651 YP_003689201.1 CDS rpiB1 NC_014215.1 2459872 2460318 R ribose-5-phosphate isomerase 1 complement(2459872..2460318) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284021 YP_003689202.1 CDS malY NC_014215.1 2460421 2461614 R L-cystathionine + H2O = L-homocysteine + NH3 + pyruvate.; cystathionine beta-lyase complement(2460421..2461614) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284196 YP_003689203.1 CDS nadE NC_014215.1 2461782 2463908 D Can use both glutamine or ammonia as a nitrogen source (By similarity). ATP + deamido-NAD+ + L-glutamine + H2O = AMP + diphosphate + NAD+ + L-glutamate.. Cofactor biosynthesis; NAD(+) biosynthesis; NAD(+) from deamido-NAD(+) (glutamine route): step 1/1.; glutamine-dependent NAD(+) synthetase 2461782..2463908 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283850 YP_003689204.1 CDS PFREUD_22900 NC_014215.1 2464121 2465002 R PadR, transcriptional regulator PadR-like family.; PadR family transcriptional regulator complement(2464121..2465002) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283939 YP_003689205.1 CDS PFREUD_22910 NC_014215.1 2465878 2466705 R polar amino acid ABC transporter ATP-binding protein complement(2465878..2466705) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283201 YP_003689206.1 CDS PFREUD_22920 NC_014215.1 2466707 2467687 R polar amino acid ABC transporter permease complement(2466707..2467687) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283202 YP_003689207.1 CDS PFREUD_22930 NC_014215.1 2467769 2468680 R polar amino acid ABC transporter substrate-binding protein complement(2467769..2468680) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283203 YP_003689208.1 CDS PFREUD_22940 NC_014215.1 2468847 2469758 R polar amino acid ABC transporter binding protein component complement(2468847..2469758) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283204 YP_003689209.1 CDS PFREUD_22950 NC_014215.1 2469894 2470913 R polar amino acid ABC transporter binding protein complement(2469894..2470913) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283205 YP_003689210.1 CDS pncA NC_014215.1 2471294 2471866 R Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA). Nicotinamide + H2O <=> Nicotinate + NH3; pyrazinamidase/nicotinamidase complement(2471294..2471866) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283206 YP_003689211.1 CDS lacI2 NC_014215.1 2472057 2473079 R LacI family transcriptional regulator complement(2472057..2473079) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284085 YP_003689212.1 CDS PFREUD_22980 NC_014215.1 2473571 2474368 D Hydroxypyruvate <=> 2-Hydroxy-3-oxopropanoate; hydroxypyruvate isomerase 2473571..2474368 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283809 YP_003689213.1 CDS iolT1 NC_014215.1 2474514 2476142 D myo-inositol transporter IolT1 2474514..2476142 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283207 YP_003689214.1 CDS PPA2234 NC_014215.1 2476182 2478188 R ATP + Long-subunit carboxylate + CoA <=> AMP + Pyrophosphate + acyl-CoA and ATP + Hexadecanoic acid + CoA <=> AMP + Palmitoyl-CoA + Pyrophosphate; long-subunit-fatty-acid--CoA ligase/synthetase complement(2476182..2478188) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283790 YP_003689215.1 CDS nfo NC_014215.1 2478185 2478988 R These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites.; endonuclease IV complement(2478185..2478988) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284105 YP_003689216.1 CDS PFREUD_23020 NC_014215.1 2479219 2479929 R hypothetical protein complement(2479219..2479929) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283947 YP_003689217.1 CDS slh2 NC_014215.1 2480032 2481402 R S-layer protein complement(2480032..2481402) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283208 YP_003689219.1 CDS int NC_014215.1 2481460 2482263 R integrase complement(2481460..2482263) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283209 YP_003689220.1 CDS tnpA NC_014215.1 2482326 2482610 R transposase IS3/IS911 complement(2482326..2482610) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283780 YP_003689221.1 CDS PFREUD_23050 NC_014215.1 2483014 2483598 D resolvase 2483014..2483598 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284390 YP_003689222.1 CDS tnpA NC_014215.1 2483743 2485074 D transposase 2483743..2485074 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283210 YP_003689223.1 CDS PFREUD_23060 NC_014215.1 2485136 2485996 R hypothetical protein complement(2485136..2485996) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284391 YP_003689224.1 CDS PFREUD_23070 NC_014215.1 2485996 2486880 R RpiR family transcriptional regulator complement(2485996..2486880) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283211 YP_003689225.1 CDS PFREUD_23080 NC_014215.1 2486904 2487824 D (R)-Pantoate + NADP+ <=> 2-Dehydropantoate + NADPH + H+; 2-dehydropantoate 2-reductase 2486904..2487824 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283212 YP_003689226.1 CDS PFREUD_23090 NC_014215.1 2487847 2488587 R dehydrogenase complement(2487847..2488587) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283213 YP_003689227.1 CDS tnpA NC_014215.1 2488783 2490090 R transposase complement(2488783..2490090) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283214 YP_003689228.1 CDS PFREUD_23100 NC_014215.1 2490111 2490281 D hypothetical protein 2490111..2490281 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284392 YP_003689229.1 CDS iolH NC_014215.1 2491563 2492429 D myo-inositol catabolism protein IolH 2491563..2492429 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283735 YP_003689230.1 CDS lacI3 NC_014215.1 2492601 2493635 D The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain; LacI family transcriptional regulator 2492601..2493635 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283789 YP_003689231.1 CDS pf667 NC_014215.1 2494284 2495222 D recombinant protein active on 1- naphthyl actetate and 1- naphthyl propionate; carboxylic ester hydrolase 2494284..2495222 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283810 YP_003689232.1 CDS ugpQ2 NC_014215.1 2495479 2496246 D glycerophosphodiester + H2O <=> Alcohol + sn-glycerol 3-phosphate; glycerophosphoryl diester phosphodiesterase 2495479..2496246 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284051 YP_003689233.1 CDS PFREUD_23170 NC_014215.1 2496441 2497805 D Sugar phosphate permease; MFS family transporter 2496441..2497805 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284453 YP_003689234.1 CDS PFREUD_23180 NC_014215.1 2498119 2498889 D ABC transporter ATP-binding protein 2498119..2498889 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283216 YP_003689235.1 CDS PFREUD_23190 NC_014215.1 2499037 2500065 R xylose phosphate isomerase/epimerase complement(2499037..2500065) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283217 YP_003689236.1 CDS PFREUD_23200 NC_014215.1 2500189 2501349 R myo-inositol + NAD+ <=> 2,4,6/3,5-Pentahydroxycyclohexanone + NADH + H+; inositol 2-dehydrogenase complement(2500189..2501349) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283218 YP_003689237.1 CDS lacI4 NC_014215.1 2501508 2502551 R LacI family transcriptional regulator complement(2501508..2502551) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283219 YP_003689238.1 CDS sseB NC_014215.1 2502578 2503396 R thiosulfate + Cyanide <=> Sulfite + thiocyanate; thiosulfate sulfurtransferase complement(2502578..2503396) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283811 YP_003689239.1 CDS gadB NC_014215.1 2503808 2505220 D L-glutamate <=> 4-aminobutanoate + CO2 L-aspartate <=> beta-alanine + CO2; glutamate decarboxylase 2503808..2505220 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284303 YP_003689240.1 CDS PFREUD_23240 NC_014215.1 2505266 2506810 D glutamate/gamma-aminobutyrate antiporter 2505266..2506810 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283591 YP_003689241.1 CDS PFREUD_23250 NC_014215.1 2507105 2509138 D hypothetical protein 2507105..2509138 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283220 YP_003689242.1 CDS PFREUD_23260 NC_014215.1 2508955 2509392 R hypothetical protein complement(2508955..2509392) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283221 YP_003689243.1 CDS PFREUD_23270 NC_014215.1 2509403 2510977 R hypothetical protein complement(2509403..2510977) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283222 YP_003689244.1 CDS PFREUD_23280 NC_014215.1 2511125 2511952 R dehydrogenase/reductase complement(2511125..2511952) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283223 YP_003689245.1 CDS PFREUD_23290 NC_014215.1 2512128 2512484 D hypothetical protein 2512128..2512484 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283224 YP_003689246.1 CDS proV NC_014215.1 2512611 2513531 D glycine/betaine ABC transporter ATP-binding protein 2512611..2513531 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283225 YP_003689247.1 CDS proW NC_014215.1 2513528 2514175 D glycine/betaine ABC transporter 2513528..2514175 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284122 YP_003689248.1 CDS proZ NC_014215.1 2514172 2514852 D glycine/betaine ABC transporter permease 2514172..2514852 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284123 YP_003689249.1 CDS aspC NC_014215.1 2514956 2516143 R Annotation inferred by similarity with protein ybdl E coli (swiss prot P77806); class I and II aminotransferase complement(2514956..2516143) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284125 YP_003689250.1 CDS PFREUD_23340 NC_014215.1 2516328 2517110 D hypothetical protein 2516328..2517110 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283363 YP_003689251.1 CDS PFREUD_23350 NC_014215.1 2517124 2517414 D hypothetical protein 2517124..2517414 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283226 YP_003689252.1 CDS PFREUD_23360 NC_014215.1 2517442 2517720 D hypothetical protein 2517442..2517720 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283227 YP_003689253.1 CDS PFREUD_23380 NC_014215.1 2518085 2519536 R hypothetical protein complement(2518085..2519536) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283229 YP_003689255.1 CDS PFREUD_23400 NC_014215.1 2519813 2520808 D Binding-protein-dependent transport systems inner membrane component 2519813..2520808 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283231 YP_003689256.1 CDS PFREUD_23410 NC_014215.1 2520805 2521785 D Binding-protein-dependent transport systems inner membrane component 2520805..2521785 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283232 YP_003689257.1 CDS PFREUD_23420 NC_014215.1 2521818 2523251 D Extracellular solute-binding protein 2521818..2523251 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283233 YP_003689258.1 CDS PFREUD_23430 NC_014215.1 2523531 2525072 D major facilitator superfamily permease 2523531..2525072 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283234 YP_003689259.1 CDS rplI NC_014215.1 2525201 2525653 R 50S ribosomal protein L9 complement(2525201..2525653) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283235 YP_003689260.1 CDS rpsR NC_014215.1 2525665 2525904 R 30S ribosomal protein S18 complement(2525665..2525904) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284205 YP_003689261.1 CDS ssb NC_014215.1 2526006 2526572 R ssDNA-binding protein complement(2526006..2526572) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284251 YP_003689262.1 CDS rpsF NC_014215.1 2526753 2527067 R 30S ribosomal protein S6 complement(2526753..2527067) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284301 YP_003689263.1 CDS PFREUD_23480 NC_014215.1 2527003 2527074 R hypothetical protein complement(2527003..2527074) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284240 YP_003689264.1 CDS PFREUD_23490 NC_014215.1 2527886 2528182 D hypothetical protein 2527886..2528182 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283236 YP_003689265.1 CDS ppa NC_014215.1 2528254 2528613 R Inorganic pyrophosphatase (EC:3.6.1.1) (PPase) [1, 2] is the enzyme responsible for the hydrolysis of pyrophosphate (PPi) which is formed principally as the product of the many biosynthetic reactions that utilise ATP; inorganic pyrophosphatase complement(2528254..2528613) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283237 YP_003689266.1 CDS PFREUD_23510 NC_014215.1 2529204 2529884 R This family contains chlorite dismutase enzymes of bacterial and archaeal origin. This enzyme catalyses the disproportionation of chlorite into chloride and oxygen.; chlorite dismutase complement(2529204..2529884) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284094 YP_003689267.1 CDS PFREUD_23520 NC_014215.1 2530109 2530492 R hypothetical protein complement(2530109..2530492) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283238 YP_003689268.1 CDS PFREUD_23530 NC_014215.1 2530642 2531373 D Isochorismate + H2O <=> 2,3-dihydro-2,3-dihydroxybenzoate + pyruvate; isochorismatase hydrolase 2530642..2531373 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283239 YP_003689269.1 CDS tnpA NC_014215.1 2533393 2534358 R transposase complement(2533393..2534358) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283748 YP_003689271.1 CDS PFREUD_23580 NC_014215.1 2537530 2538783 D permease of the major facilitator superfamily protein 2537530..2538783 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283242 YP_003689272.1 CDS tagA NC_014215.1 2538875 2539501 D 3-methyladenine DNA glycosylase 2538875..2539501 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283243 YP_003689273.1 CDS PFREUD_23600 NC_014215.1 2539883 2541091 D hypothetical protein 2539883..2541091 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284309 YP_003689274.1 CDS PFREUD_23610 NC_014215.1 2541121 2542368 R Starch + H2O <=> Dextrin + Starch; alpha-amylase complement(2541121..2542368) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283244 YP_003689275.1 CDS pigV NC_014215.1 2542497 2543651 R alpha-1,6-mannosyltransferase involved in glycosylphosphatidylinositol-anchor biosynthesis. transfers the second mannose to the glycosylphosphatidylinositol during GPI precursor assembly; GPI mannosyltransferase 2 complement(2542497..2543651) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283245 YP_003689276.1 CDS PFREUD_23630 NC_014215.1 2543648 2545492 R hypothetical protein complement(2543648..2545492) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284072 YP_003689277.1 CDS mrc/ponA NC_014215.1 2545489 2547624 R peptidoglycan glycosyltransferase complement(2545489..2547624) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283246 YP_003689278.1 CDS PFREUD_23650 NC_014215.1 2547617 2548036 R hypothetical protein complement(2547617..2548036) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283909 YP_003689279.1 CDS PFREUD_23670 NC_014215.1 2548452 2548835 R hypothetical protein complement(2548452..2548835) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283248 YP_003689280.1 CDS PFREUD_23680 NC_014215.1 2549109 2550953 D hypothetical protein 2549109..2550953 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283249 YP_003689281.1 CDS ltrA NC_014215.1 2551231 2552085 R hypothetical protein complement(2551231..2552085) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283250 YP_003689282.1 CDS PFREUD_23700 NC_014215.1 2552547 2552783 D hypothetical protein 2552547..2552783 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283838 YP_003689283.1 CDS cypA NC_014215.1 2552843 2554057 R cytochrome P450 complement(2552843..2554057) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283251 YP_003689284.1 CDS PFREUD_23720 NC_014215.1 2554390 2555244 R aldo/keto reductase complement(2554390..2555244) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283457 YP_003689285.1 CDS PFREUD_23730 NC_014215.1 2555451 2556440 R hypothetical protein complement(2555451..2556440) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283252 YP_003689286.1 CDS aglA NC_014215.1 2556706 2558448 R alpha-1,4-glucosidase complement(2556706..2558448) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283253 YP_003689287.1 CDS PFREUD_23750 NC_014215.1 2558511 2558996 R hypothetical protein complement(2558511..2558996) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283302 YP_003689288.1 CDS PFREUD_23760 NC_014215.1 2559508 2561487 D Xanthine/uracil permease 2559508..2561487 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283254 YP_003689289.1 CDS pf2042 NC_014215.1 2561587 2562588 R carboxylic ester hydrolase complement(2561587..2562588) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283255 YP_003689290.1 CDS acs NC_014215.1 2563067 2564734 D acetyl-CoA <=> Long-subunit acyl-CoA; Fatty-acyl-CoA synthase 2563067..2564734 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284039 YP_003689291.1 CDS PFREUD_23790 NC_014215.1 2565288 2565617 D hypothetical protein 2565288..2565617 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283294 YP_003689292.1 CDS katA NC_014215.1 2565735 2567183 R Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide, 2 H2O2 = O2 + 2 H2O , Heme group, cofactor NADPH, Homotetramer, Cytoplasm, catalase family.; catalase complement(2565735..2567183) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283256 YP_003689293.1 CDS PFREUD_23810 NC_014215.1 2567288 2568205 R peroxidase complement(2567288..2568205) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283800 YP_003689294.1 CDS PFREUD_23820 NC_014215.1 2568767 2570719 D ABC transporter 2568767..2570719 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283257 YP_003689295.1 CDS PFREUD_23830 NC_014215.1 2571186 2571956 R hypothetical protein complement(2571186..2571956) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283258 YP_003689296.1 CDS PFREUD_23840 NC_014215.1 2572040 2573296 R chloride channel protein complement(2572040..2573296) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283259 YP_003689297.1 CDS tnpA NC_014215.1 2573729 2574013 D transposase IS3/IS911 2573729..2574013 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283260 YP_003689298.1 CDS int NC_014215.1 2574076 2574879 D integrase 2574076..2574879 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284394 YP_003689299.1 CDS PFREUD_23850 NC_014215.1 2574876 2574989 D hypothetical protein 2574876..2574989 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283781 YP_003689300.1 CDS PFREUD_23860 NC_014215.1 2575456 2575755 D hypothetical protein 2575456..2575755 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283261 YP_003689301.1 CDS PFREUD_23870 NC_014215.1 2576251 2576484 R hypothetical protein complement(2576251..2576484) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283262 YP_003689302.1 CDS PFREUD_23880 NC_014215.1 2576711 2577124 R hypothetical protein complement(2576711..2577124) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283263 YP_003689303.1 CDS fba2 NC_014215.1 2577287 2578174 R D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde 3-phosphate; Fructose-bisphosphate aldolase class I complement(2577287..2578174) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283264 YP_003689304.1 CDS PFREUD_23900 NC_014215.1 2578557 2579108 R hypothetical protein complement(2578557..2579108) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283544 YP_003689305.1 CDS gltA1 NC_014215.1 2579488 2580771 D publication in : nucleotide sequence, expression and transcriptional analysis of the Corynebacterium glutamicum gltA gene encoding citrate synthase. Microbiology 140:1817-1828(1994) - acetyl-CoA + H2O + oxaloacetate = citrate + CoA. Weakly inhibited by ATP. Homohexamer. Citrate synthase is found in nearly all cells capable of oxidative metabolism.; Citrate synthase 2579488..2580771 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283265 YP_003689306.1 CDS yghZ NC_014215.1 2581011 2582069 D Oxidoreductase 2581011..2582069 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283635 YP_003689307.1 CDS PFREUD_23930 NC_014215.1 2582212 2582853 D hypothetical protein 2582212..2582853 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284492 YP_003689308.1 CDS PFREUD_23940 NC_014215.1 2582881 2583084 R hypothetical protein complement(2582881..2583084) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283266 YP_003689309.1 CDS PFREUD_23950 NC_014215.1 2583477 2585981 R drug exporters of the RND superfamily complement(2583477..2585981) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283267 YP_003689310.1 CDS tetR1 NC_014215.1 2586195 2586881 D TetR family transcriptional regulator 2586195..2586881 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283268 YP_003689311.1 CDS PFREUD_23970 NC_014215.1 2586939 2587595 D Oxidoreductase 2586939..2587595 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284320 YP_003689312.1 CDS PFREUD_23980 NC_014215.1 2587784 2588101 D hypothetical protein 2587784..2588101 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283269 YP_003689313.1 CDS PFREUD_23990 NC_014215.1 2588141 2588932 R hypothetical protein complement(2588141..2588932) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283270 YP_003689314.1 CDS fepC1 NC_014215.1 2588922 2589689 R iron ABC transporter ATPase complement(2588922..2589689) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283271 YP_003689315.1 CDS fepD NC_014215.1 2589578 2590792 R iron ABC transporter permease complement(2589578..2590792) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283548 YP_003689316.1 CDS fepC2 NC_014215.1 2590800 2591963 R Iron transport system substrate-binding protein ABC transporter complement(2590800..2591963) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283551 YP_003689317.1 CDS mscs NC_014215.1 2592300 2594075 D MscS transporter, small conductance mechanosensitive ion channel 2592300..2594075 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283549 YP_003689318.1 CDS pcnB NC_014215.1 2594130 2595620 D tRNA nucleotidyltransferase PcnB 2594130..2595620 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283912 YP_003689319.1 CDS PFREUD_24050 NC_014215.1 2596056 2597546 D major facilitator superfamily permease 2596056..2597546 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284003 YP_003689320.1 CDS PFREUD_24060 NC_014215.1 2597704 2599800 D hypothetical protein 2597704..2599800 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283272 YP_003689321.1 CDS PFREUD_25170 NC_014215.1 2600095 2601300 D transposase for IS3514b 2600095..2601300 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283273 YP_003689322.1 CDS PFREUD_24070 NC_014215.1 2601566 2603662 D serine/threonine protein kinase 2601566..2603662 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283284 YP_003689323.1 CDS gpm1 NC_014215.1 2603738 2604457 D phosphoglycerate mutase/fructose-2,6-bisphosphatase 2603738..2604457 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283274 YP_003689324.1 CDS PFREUD_24090 NC_014215.1 2604586 2605905 R ABC transporter substrate-binding protein complement(2604586..2605905) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283655 YP_003689325.1 CDS trxB NC_014215.1 2606324 2607301 D thioredoxin reductase 2606324..2607301 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283275 YP_003689326.1 CDS trxA1 NC_014215.1 2607475 2607798 D thioredoxin. thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond.; thioredoxin 2607475..2607798 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284441 YP_003689327.1 CDS osmC NC_014215.1 2607798 2608244 D Osmotically inducible protein C (OsmC) is a stress -induced protein found in E. Coli.; OsmC protein 2607798..2608244 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284435 YP_003689328.1 CDS PFREUD_24130 NC_014215.1 2608216 2608299 D hypothetical protein 2608216..2608299 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283988 YP_003689329.1 CDS parB NC_014215.1 2608539 2609522 R Involved in chromosome partition. Localize to both poles of the predivisional cell following completion of DNA replication. Binds to the DNA origin of replication; chromosome partitioning protein complement(2608539..2609522) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283276 YP_003689330.1 CDS parA NC_014215.1 2609519 2611216 R ATPases involved in chromosome partitioning; chromosome partitioning protein complement(2609519..2611216) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283998 YP_003689331.1 CDS PFREUD_24160 NC_014215.1 2611468 2611629 R hypothetical protein complement(2611468..2611629) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283997 YP_003689332.1 CDS gidB NC_014215.1 2612214 2612999 R methyltransferase GidB complement(2612214..2612999) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283277 YP_003689333.1 CDS oxaA NC_014215.1 2614006 2615073 R Required for the insertion of integral membrane proteins into the membrane. Probably plays an essential role in the integration of proteins of the respiratory subunit complexes. Involved in integration of membrane proteins that insert dependently and independently of the Sec translocase complex.; hypothetical protein complement(2614006..2615073) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283799 YP_003689334.1 CDS PFREUD_24200 NC_014215.1 2615108 2615458 R hypothetical protein complement(2615108..2615458) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283991 YP_003689335.1 CDS rnpA NC_014215.1 2615455 2615883 R ribonuclease P complement(2615455..2615883) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283278 YP_003689336.1 CDS PFREUD_24220 NC_014215.1 2615889 2616026 R hypothetical protein complement(2615889..2616026) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284193 PFREUD_00230 tRNA PFREUD_00230 NC_014215.1 30488 30564 D tRNA-Ile 30488..30564 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282025 PFREUD_01480 tRNA PFREUD_01480 NC_014215.1 188470 188555 D tRNA-Ser 188470..188555 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282095 PFREUD_01520 tRNA PFREUD_01520 NC_014215.1 192316 192408 D tRNA-Ser 192316..192408 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282099 PFREUD_01530 tRNA PFREUD_01530 NC_014215.1 192593 192668 D tRNA-Arg 192593..192668 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282100 PFREUD_03050 tRNA PFREUD_03050 NC_014215.1 376567 376640 R tRNA-Gly complement(376567..376640) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282193 PFREUD_03740 tRNA PFREUD_03740 NC_014215.1 452454 452541 R tRNA-Ser complement(452454..452541) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282241 PFREUD_04220 tRNA PFREUD_04220 NC_014215.1 510114 510200 R tRNA-Leu complement(510114..510200) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283751 PFREUD_04820 tRNA PFREUD_04820 NC_014215.1 580171 580244 R tRNA-Phe complement(580171..580244) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284053 PFREUD_04830 tRNA PFREUD_04830 NC_014215.1 580258 580331 R tRNA-Asp complement(580258..580331) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282305 PFREUD_04840 tRNA PFREUD_04840 NC_014215.1 580535 580607 R tRNA-Glu complement(580535..580607) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282306 PFREUD_04900 tRNA PFREUD_04900 NC_014215.1 585797 585869 D tRNA-Lys 585797..585869 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284323 PFREUD_05400 tRNA PFREUD_05400 NC_014215.1 639739 639821 D tRNA-Tyr 639739..639821 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282333 PFREUD_05430 tRNA PFREUD_05430 NC_014215.1 642652 642724 D tRNA-Thr 642652..642724 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283304 PFREUD_05440 tRNA PFREUD_05440 NC_014215.1 642803 642878 D tRNA-Met 642803..642878 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282335 PFREUD_05500 tRNA PFREUD_05500 NC_014215.1 647086 647161 D tRNA-Trp 647086..647161 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282339 PFREUD_07780 tRNA PFREUD_07780 NC_014215.1 887194 887278 R tRNA-Leu complement(887194..887278) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283324 PFREUD_07820 tRNA PFREUD_07820 NC_014215.1 888917 888989 D tRNA-Lys 888917..888989 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283663 PFREUD_07880 tRNA PFREUD_07880 NC_014215.1 895730 895805 R tRNA-His complement(895730..895805) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282435 PFREUD_07910 tRNA PFREUD_07910 NC_014215.1 897932 898007 D tRNA-Arg 897932..898007 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282437 PFREUD_08190 tRNA PFREUD_08190 NC_014215.1 934527 934602 R tRNA-Pro complement(934527..934602) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284308 PFREUD_08200 tRNA PFREUD_08200 NC_014215.1 934862 934935 D tRNA-Gly 934862..934935 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282451 PFREUD_08580 tRNA PFREUD_08580 NC_014215.1 973393 973468 R tRNA-Ala complement(973393..973468) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282471 PFREUD_09560 tRNA PFREUD_09560 NC_014215.1 1076813 1076889 R tRNA-Val complement(1076813..1076889) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283565 PFREUD_10020 tRNA PFREUD_10020 NC_014215.1 1134405 1134481 R tRNA-Met complement(1134405..1134481) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283377 PFREUD_10310 tRNA PFREUD_10310 NC_014215.1 1163395 1163469 R tRNA-Arg complement(1163395..1163469) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283841 PFREUD_11060 tRNA PFREUD_11060 NC_014215.1 1241438 1241514 D tRNA-Pro 1241438..1241514 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283840 PFREUD_12050 tRNA PFREUD_12050 NC_014215.1 1356858 1356933 R tRNA-Asn complement(1356858..1356933) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284057 PFREUD_12150 tRNA PFREUD_12150 NC_014215.1 1365359 1365432 R tRNA-Met complement(1365359..1365432) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282641 PFREUD_12450 tRNA PFREUD_12450 NC_014215.1 1395529 1395603 R tRNA-Val complement(1395529..1395603) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284339 PFREUD_12470 tRNA PFREUD_12470 NC_014215.1 1395605 1395675 R tRNA-Cys complement(1395605..1395675) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282656 PFREUD_12480 tRNA PFREUD_12480 NC_014215.1 1395737 1395809 R tRNA-Gly complement(1395737..1395809) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282657 PFREUD_12490 tRNA PFREUD_12490 NC_014215.1 1396213 1396287 D tRNA-Val 1396213..1396287 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282658 PFREUD_13300 tRNA PFREUD_13300 NC_014215.1 1491693 1491768 R tRNA-Glu complement(1491693..1491768) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283733 PFREUD_13310 tRNA PFREUD_13310 NC_014215.1 1491862 1491933 R tRNA-Gln complement(1491862..1491933) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282693 PFREUD_14160 tRNA PFREUD_14160 NC_014215.1 1563699 1563787 D tRNA-Leu 1563699..1563787 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282725 PFREUD_15380 tRNA PFREUD_15380 NC_014215.1 1687457 1687542 D tRNA-Leu 1687457..1687542 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282778 PFREUD_17280 tRNA PFREUD_17280 NC_014215.1 1884496 1884571 R tRNA-Leu complement(1884496..1884571) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282889 PFREUD_17430 tRNA PFREUD_17430 NC_014215.1 1898683 1898761 R tRNA-Gln complement(1898683..1898761) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282897 PFREUD_17970 tRNA PFREUD_17970 NC_014215.1 1945407 1945482 R tRNA-Ala complement(1945407..1945482) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9282930 PFREUD_18080 tRNA PFREUD_18080 NC_014215.1 1953238 1953313 D tRNA-Arg 1953238..1953313 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9284451 PFREUD_18500 tRNA PFREUD_18500 NC_014215.1 1985975 1986050 D tRNA-Thr 1985975..1986050 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283851 PFREUD_19380 tRNA PFREUD_19380 NC_014215.1 2091261 2091334 R tRNA-Pro complement(2091261..2091334) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283672 PFREUD_19700 tRNA PFREUD_19700 NC_014215.1 2128161 2128248 R tRNA-Ser complement(2128161..2128248) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283007 PFREUD_20490 tRNA PFREUD_20490 NC_014215.1 2208955 2209030 R tRNA-Thr complement(2208955..2209030) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283043 PFREUD_23660 tRNA PFREUD_23660 NC_014215.1 2548441 2548516 D tRNA-Ala 2548441..2548516 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 9283247 754252000001 rRNA 754252000001 NC_014215.1 1535083 1535198 R 5S ribosomal RNA complement(1535083..1535198) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 754252000002 rRNA 754252000002 NC_014215.1 1535346 1538462 R 23S ribosomal RNA complement(1535346..1538462) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 754252000003 rRNA 754252000003 NC_014215.1 1538814 1540325 R 16S ribosomal RNA complement(1538814..1540325) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 754252000004 rRNA 754252000004 NC_014215.1 1975630 1975745 R 5S ribosomal RNA complement(1975630..1975745) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 754252000005 rRNA 754252000005 NC_014215.1 1975891 1979007 R 23S ribosomal RNA complement(1975891..1979007) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 754252000006 rRNA 754252000006 NC_014215.1 1979359 1980870 R 16S ribosomal RNA complement(1979359..1980870) Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1