-- dump date 20140619_235140 -- class Genbank::CDS -- table cds_note -- id note YP_004441123.1 COGs: COG0593 ATPase involved in DNA replication initiation; HAMAP: Chromosomal replication control, initiator DnaA; InterPro IPR013317:IPR013159:IPR001957:IPR003593; KEGG: pgn:PGN_0001 chromosomal replication initiation protein; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal; SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; SPTR: Chromosomal replication initiator protein DnaA; TIGRFAM: Chromosomal replication control, initiator DnaA; IMG reference gene:2504823874; PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA YP_004441124.1 COGs: COG0110 acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: pgn:PGN_0002 hypothetical protein; PFAM: Bacterial transferase hexapeptide repeat; SPTR: Bacterial transferase hexapeptide repeat protein; IMG reference gene:2504823875; PFAM: Bacterial transferase hexapeptide (three repeats) YP_004441125.1 COGs: COG5496 thioesterase; InterPro IPR006683; KEGG: bvu:BVU_1957 hypothetical protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase family protein; IMG reference gene:2504823876; PFAM: Thioesterase superfamily YP_004441126.1 COGs: COG0525 Valyl-tRNA synthetase; HAMAP: Valyl-tRNA synthetase; InterPro IPR002300:IPR013155:IPR019499:IPR002303; KEGG: pgi:PG1132 valyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ia; Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; Valyl-tRNA synthetase, class Ia, tRNA binding arm; PRIAM: Valine--tRNA ligase; SPTR: Valine--tRNA ligase; TIGRFAM: Valyl-tRNA synthetase, class Ia; IMG reference gene:2504823877; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Valyl tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA synthetase YP_004441127.1 KEGG: edi:EDI_162200 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504823878 YP_004441128.1 SPTR: uncharacterized protein; IMG reference gene:2504823879; PFAM: DNA alkylation repair enzyme YP_004441129.1 COGs: COG4822 Cobalamin biosynthesis protein CbiK Co2+ chelatase; InterPro IPR010388; KEGG: anaerobic cobalt chelatase; PFAM: Anaerobic cobalt chelatase; SPTR: sirohydrochlorin cobaltochelatase; IMG reference gene:2504823880; PFAM: Cobalt chelatase (CbiK) YP_004441130.1 COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug domain protein; IMG reference gene:2504823881; PFAM: TonB-dependent Receptor Plug Domain YP_004441131.1 IMG reference gene:2504823882 YP_004441132.1 COGs: COG2243 Precorrin-2 methylase; InterPro IPR000878; KEGG: pgn:PGN_1490 probable precorrin-2 C20-methyltransferase; PFAM: Tetrapyrrole methylase; SPTR: precorrin-2 C(20)-methyltransferase; IMG reference gene:2504823883; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-2 C20-methyltransferase YP_004441133.1 COGs: COG2875 Precorrin-4 methylase; InterPro IPR002750:IPR000878:IPR006362; KEGG: bvu:BVU_3081 precorrin-4 C11-methyltransferase; PFAM: Cobalamin (vitamin B12) biosynthesis CbiG, core; Tetrapyrrole methylase; PRIAM: Precorrin-4 C(11)-methyltransferase; SPTR: Precorrin-4 C(11)-methyltransferase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase, core; IMG reference gene:2504823884; PFAM: Cobalamin synthesis G C-terminus; Cobalamin biosynthesis central region; Tetrapyrrole (Corrin/Porphyrin) Methylases; Cobalamin synthesis G N-terminal; TIGRFAM: precorrin-4 C11-methyltransferase YP_004441134.1 COGs: COG2242 Precorrin-6B methylase 2; InterPro IPR012818:IPR014008; KEGG: bvu:BVU_3082 decarboxylating precorrin-6y C5,15-methyltransferase; PRIAM: Precorrin-6Y C(5,15)-methyltransferase (decarboxylating); SPTR: Precorrin-6y C5,15-methyltransferase (Decarboxylating), CbiE subunit; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase, core; Cobalamin (vitamin B12) biosynthesis CbiT, precorrin-6Y methyltransferase-core; IMG reference gene:2504823885; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit YP_004441135.1 COGs: COG1010 Precorrin-3B methylase; InterPro IPR000878:IPR003722:IPR006363; KEGG: pru:PRU_1082 precorrin-3B C17-methyltransferase/precorrin-8X methylmutase; PFAM: Tetrapyrrole methylase; Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase, core; PRIAM: Precorrin-3B C(17)-methyltransferase., Precorrin-8X methylmutase; SPTR: Precorrin-3B C(17)-methyltransferase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobJ/CibH, precorrin-3B C17-methyltransferase, core; IMG reference gene:2504823886; PFAM: Precorrin-8X methylmutase; Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-3B C17-methyltransferase YP_004441136.1 InterPro IPR005625; KEGG: bfr:BF2513 hypothetical protein; PFAM: PepSY-associated TM helix; SPTR: PepSY domain protein; IMG reference gene:2504823887 YP_004441137.1 KEGG: chu:CHU_0258 hypothetical protein; SPTR: lipoprotein; IMG reference gene:2504823888 YP_004441138.1 COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1453 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug domain protein; IMG reference gene:2504823889; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_004441139.1 COGs: COG4822 Cobalamin biosynthesis protein CbiK Co2+ chelatase; InterPro IPR010388; KEGG: pdi:BDI_1070 anaerobic cobalt chelatase CbiK; PFAM: Anaerobic cobalt chelatase; PRIAM: Sirohydrochlorin cobaltochelatase; SPTR: sirohydrochlorin cobaltochelatase; IMG reference gene:2504823890; PFAM: Cobalt chelatase (CbiK) YP_004441140.1 COGs: COG1797 Cobyrinic acid a c-diamide synthase; HAMAP: Cobyrinic acid A,C-diamide synthase; InterPro IPR002586:IPR011698:IPR004484; KEGG: pgi:PG1163 cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase; SPTR: Cobyrinic acid a,c-diamide synthase; TIGRFAM: Cobyrinic acid a,c-diamide synthase CbiA; IMG reference gene:2504823891; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyrinic acid a,c-diamide synthase YP_004441141.1 COGs: COG1903 Cobalamin biosynthesis protein CbiD; HAMAP: Cobalamin (vitamin B12) biosynthesis CbiD; InterPro IPR003723:IPR002748; KEGG: bvu:BVU_3080 precorrin-6x reductase/cobalamin biosynthetic protein CbiD; PFAM: Cobalamin (vitamin B12) biosynthesis CbiD; Cobalamin (vitamin B12) biosynthesis CobK/CbiJ, precorrin-6x reductase; SPTR: Cobalamin biosynthesis protein CbiD; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CbiD; IMG reference gene:2504823892; PFAM: Precorrin-6x reductase CbiJ/CobK; CbiD; TIGRFAM: precorrin-6x reductase; cobalamin biosynthesis protein CbiD YP_004441142.1 COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439:IPR003593; KEGG: pru:PRU_2512 iron compound ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Iron-chelate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ferrichrome ABC transporter, ATP-binding protein FhuC; manually curated; IMG reference gene:2504823893; PFAM: ABC transporter YP_004441143.1 COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: pdi:BDI_1018 iron(III) ABC transporter permease protein; PFAM: Bacterial transport system permease protein; SPTR: Vitamin B12 ABC transporter, permease family protein; IMG reference gene:2504823894; PFAM: FecCD transport family YP_004441144.1 COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: pdi:BDI_1017 exported periplasmic protein; PFAM: Periplasmic binding protein; SPTR: ABC transporter, substrate-binding protein; IMG reference gene:2504823895; PFAM: Periplasmic binding protein YP_004441145.1 COGs: COG5492 Bacterial surface protein containing Ig-like domains; InterPro IPR003343; KEGG: fjo:Fjoh_3203 Ig domain-containing protein; PFAM: Bacterial Ig-like, group 2; SMART: Bacterial Ig-like, group 2; SPTR: Bacterial group 2 Ig-like protein; IMG reference gene:2504823896; PFAM: Bacterial Ig-like domain (group 2) YP_004441146.1 IMG reference gene:2504823897 YP_004441147.1 COGs: COG0171 NAD synthase; InterPro IPR003010:IPR003694; KEGG: pgn:PGN_1441 NAD synthetase; PFAM: NAD+ synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PRIAM: NAD(+) synthase (glutamine-hydrolyzing); SPTR: NAD+ synthase; TIGRFAM: NAD+ synthase; IMG reference gene:2504823898; PFAM: NAD synthase; Carbon-nitrogen hydrolase; TIGRFAM: NAD+ synthetase YP_004441148.1 COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: pgn:PGN_1943 polyprenyl synthetase; PFAM: Polyprenyl synthetase; PRIAM: Trans-hexaprenyltranstransferase; SPTR: Polyprenyl synthetase; IMG reference gene:2504823899; PFAM: Polyprenyl synthetase YP_004441149.1 KEGG: pgn:PGN_0356 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504823900; PFAM: Colicin V production protein YP_004441150.1 COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825:IPR010231; KEGG: pgn:PGN_0357 cysteine desulfurase activator complex subunit SufB; PFAM: SUF system FeS cluster assembly, SufBD; SPTR: FeS assembly protein SufB; TIGRFAM: SUF system FeS cluster assembly, SufB; IMG reference gene:2504823901; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB YP_004441151.1 COGs: COG0396 ABC-type transport system involved in Fe-S cluster assembly ATPase component; InterPro IPR003439:IPR010230; KEGG: pru:PRU_2374 FeS assembly ATPase SufC; PFAM: ABC transporter-like; SPTR: FeS assembly ATPase SufC; TIGRFAM: ATPase SufC, SUF system FeS cluster assembly; IMG reference gene:2504823902; PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC YP_004441152.1 COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825:IPR011542; KEGG: pgn:PGN_0359 ABC transporter permease protein; PFAM: SUF system FeS cluster assembly, SufBD; SPTR: FeS assembly protein SufD; TIGRFAM: SUF system FeS cluster assembly, SufD; IMG reference gene:2504823903; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD YP_004441153.1 InterPro IPR000620; KEGG: ppn:Palpr_1888 hypothetical protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: membrane protein; IMG reference gene:2504823904; PFAM: EamA-like transporter family YP_004441154.1 InterPro IPR003343; KEGG: polysaccharide deacetylase; PFAM: Bacterial Ig-like, group 2; SMART: Bacterial Ig-like, group 2; SPTR: Bacterial group 2 Ig-like protein; IMG reference gene:2504823905; PFAM: Bacterial Ig-like domain (group 2) YP_004441155.1 COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531:IPR017690; KEGG: bfr:BF3873 hypothetical protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: Outer membrane insertion signal domain protein; TIGRFAM: Outer membrane insertion C-terminal signal, omp85; IMG reference gene:2504823906; PFAM: TonB-dependent Receptor Plug Domain YP_004441156.1 SPTR: lipoprotein; IMG reference gene:2504823907 YP_004441157.1 COGs: COG2957 Peptidylarginine deiminase; InterPro IPR007466; KEGG: pgn:PGN_0257 arginine deiminase; PFAM: Peptidyl-arginine deiminase, Porphyromonas-type; PRIAM: Agmatine deiminase; SPTR: uncharacterized protein; IMG reference gene:2504823908; PFAM: Porphyromonas-type peptidyl-arginine deiminase YP_004441158.1 COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: pdi:BDI_1175 beta-ureidopropionase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PRIAM: N-carbamoylputrescine amidase; SPTR: Hydrolase, carbon-nitrogen family; IMG reference gene:2504823909; PFAM: Carbon-nitrogen hydrolase YP_004441159.1 InterPro IPR019734; KEGG: pgi:PG1430 TPR domain-containing protein; SPTR: Tetratricopeptide repeat protein; IMG reference gene:2504823910 YP_004441160.1 COGs: COG0054 Riboflavin synthase beta-chain; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; InterPro IPR002180; KEGG: bfs:BF0875 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; SPTR: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; IMG reference gene:2504823911; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase YP_004441161.1 COGs: COG1217 membrane GTPase involved in stress response; InterProIPR000795:IPR004161:IPR000640:IPR005225:IPR 006298; KEGG: pgn:PGN_0658 GTP-binding elongation factor family protein TypA/BipA; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; SPTR: GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; IMG reference gene:2504823912; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA; small GTP-binding protein domain YP_004441162.1 KEGG: pgn:PGN_0426 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504823913 YP_004441163.1 COGs: COG4974 Site-specific recombinase XerD; HAMAP: Tyrosine recombinase xerC; InterPro IPR004107:IPR002104; KEGG: pgn:PGN_0385 integrase/recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Phage integrase, N-terminal SAM domain protein; IMG reference gene:2504823914; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family YP_004441164.1 COGs: COG0757 3-dehydroquinate dehydratase II; HAMAP: Dehydroquinase, class II; InterPro IPR001874; KEGG: pgn:PGN_0386 3-dehydroquinate dehydratase; PFAM: Dehydroquinase, class II; PRIAM: 3-dehydroquinate dehydratase; SPTR: Dehydroquinase class II; IMG reference gene:2504823915; PFAM: Dehydroquinase class II YP_004441165.1 COGs: COG4122 O-methyltransferase; InterPro IPR002935; KEGG: pgn:PGN_0387 O-methyltransferase; PFAM: O-methyltransferase, family 3; SPTR: O-methyltransferase; IMG reference gene:2504823916; PFAM: O-methyltransferase YP_004441166.1 KEGG: pgi:PG0345 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504823917 YP_004441167.1 KEGG: zpr:ZPR_4443 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504823918 YP_004441168.1 COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: pgi:PG0196 M16 family peptidase; PFAM: Peptidase M16, N-terminal; Peptidase M16, C-terminal; SPTR: Peptidase M16 inactive domain protein; IMG reference gene:2504823919; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16) YP_004441169.1 KEGG: pru:PRU_2381 lipoprotein; SPTR: lipoprotein; IMG reference gene:2504823920 YP_004441170.1 SPTR: lipoprotein; IMG reference gene:2504823921 YP_004441171.1 COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: pdi:BDI_2426 heme biosynthesis protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein; IMG reference gene:2504823922; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain YP_004441172.1 COGs: COG1600 Uncharacterized Fe-S protein; InterPro IPR013542:IPR001450; KEGG: pgn:PGN_1497 iron-sulfur cluster binding protein; PFAM: Domain of unknown function DUF1730; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: iron-sulfur cluster-binding protein; IMG reference gene:2504823923; PFAM: Domain of unknown function (DUF1730); TIGRFAM: iron-sulfur cluster binding protein YP_004441173.1 COGs: COG0385 Na+-dependent transporter; InterPro IPR002657; KEGG: pgn:PGN_0383 probable transporter; PFAM: Bile acid:sodium symporter; SPTR: Sodium bile acid symporter family protein; IMG reference gene:2504823924; PFAM: Sodium Bile acid symporter family YP_004441174.1 KEGG: str:Sterm_2254 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504823925 YP_004441175.1 KEGG: pfd:PFDG_03384 conserved hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504823926 YP_004441176.1 InterPro IPR001440:IPR019734; KEGG: pru:PRU_2004 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: Tetratricopeptide repeat protein; IMG reference gene:2504823927; PFAM: Tetratricopeptide repeat YP_004441177.1 KEGG: ppn:Palpr_0064 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504823928 YP_004441178.1 COGs: COG0556 Helicase subunit of the DNA excision repair complex; HAMAP: Excinuclease ABC, B subunit; InterProIPR006935:IPR001650:IPR001943:IPR004807:IPR 014001; KEGG: pgi:PG0380 excinuclease ABC subunit B; PFAM: DNA/RNA helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; UvrB/UvrC protein; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Excinuclease ABC, B subunit; TIGRFAM: Excinuclease ABC, B subunit; IMG reference gene:2504823929; PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; Type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC, B subunit YP_004441179.1 COGs: COG1539 Dihydroneopterin aldolase; InterPro IPR006157:IPR006156; KEGG: bfr:BF3830 dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; SPTR: Dihydroneopterin aldolase; TIGRFAM: Dihydroneopterin aldolase subgroup; Dihydroneopterin aldolase; IMG reference gene:2504823930; PFAM: Dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase; FolB domain YP_004441180.1 COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: bvu:BVU_1090 cation efflux system protein; PFAM: Cation efflux protein; SPTR: Cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; IMG reference gene:2504823931; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter YP_004441181.1 COGs: COG1760 L-serine deaminase; InterPro IPR005131:IPR005130; KEGG: pgn:PGN_2031 L-serine dehydratase; PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain; PRIAM: L-serine ammonia-lyase; SPTR: L-serine ammonia-lyase; IMG reference gene:2504823932; PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, single chain form YP_004441182.1 COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005835:IPR005907; KEGG: coc:Coch_2130 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Glucose-1-phosphate thymidylyltransferase; SPTR: Glucose-1-phosphate thymidylyltransferase; TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; IMG reference gene:2504823933; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form YP_004441183.1 KEGG: pgi:PG0698 lipoprotein; SPTR: uncharacterized protein; IMG reference gene:2504823934 YP_004441184.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR008816:IPR006665; KEGG: pgi:PG2054 lipoprotein PG3; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Rickettsia 17kDa surface antigen; SPTR: OmpA family protein; IMG reference gene:2504823935; PFAM: OmpA family YP_004441185.1 COGs: COG0167 Dihydroorotate dehydrogenase; InterPro IPR012135; KEGG: pgi:PG2055 dihydroorotate dehydrogenase 2; PFAM: Dihydroorotate dehydrogenase, class 1/ 2; SPTR: Dihydroorotate dehydrogenase 2; IMG reference gene:2504823936; PFAM: Dihydroorotate dehydrogenase YP_004441186.1 IMG reference gene:2504823938 YP_004441187.1 InterPro IPR005135; KEGG: zpr:ZPR_0199 endonuclease; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase family protein; IMG reference gene:2504823939; PFAM: Endonuclease/Exonuclease/phosphatase family YP_004441188.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: pgn:PGN_1108 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-70; IMG reference gene:2504823940; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004441189.1 KEGG: pgn:PGN_1107 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504823941 YP_004441190.1 KEGG: pgn:PGN_1106 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504823942 YP_004441191.1 InterPro IPR002559; KEGG: dal:Dalk_2552 transposase IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase, IS4 family; IMG reference gene:2504823943; PFAM: Transposase DDE domain YP_004441192.1 COGs: COG0459 Chaperonin GroEL (HSP60 family); HAMAP: 60 kDa chaperonin; InterPro IPR002423:IPR001844; KEGG: pgn:PGN_1452 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1; SPTR: Chaperonin GroL; TIGRFAM: Chaperonin Cpn60; IMG reference gene:2504823944; PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL YP_004441193.1 COGs: COG0234 Co-chaperonin GroES (HSP10); HAMAP: Chaperonin Cpn10, subgroup; InterPro IPR020818:IPR001476; KEGG: pdi:BDI_3786 co-chaperonin GroES; PFAM: Chaperonin Cpn10; SPTR: Chaperonin GroS; IMG reference gene:2504823945; PFAM: Chaperonin 10 Kd subunit YP_004441194.1 COGs: COG3681 conserved hypothetical protein; HAMAP: Uncharacterised protein family UPF0597; InterPro IPR010469; KEGG: pgi:PG0909 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504823946; PFAM: Serine dehydratase alpha chain YP_004441195.1 InterPro IPR000253; KEGG: pgn:PGN_1034 hypothetical protein; PFAM: Forkhead-associated; SPTR: FHA domain protein; IMG reference gene:2504823947; PFAM: FHA domain YP_004441196.1 COGs: COG1294 Cytochrome bd-type quinol oxidase subunit 2; InterPro IPR003317; KEGG: pgi:PG0899 cytochrome d ubiquinol oxidase, subunit II; PFAM: Cytochrome bd ubiquinol oxidase, subunit II; SPTR: cytochrome d ubiquinol oxidase, subunit II; IMG reference gene:2504823948; PFAM: Cytochrome oxidase subunit II; TIGRFAM: cytochrome d oxidase, subunit II (cydB) YP_004441197.1 COGs: COG1271 Cytochrome bd-type quinol oxidase subunit 1; InterPro IPR002585; KEGG: pgi:PG0900 cytochrome d ubiquinol oxidase, subunit I; PFAM: Cytochrome bd ubiquinol oxidase, subunit I; SPTR: Cytochrome D ubiquinol oxidase subunit I; IMG reference gene:2504823949; PFAM: Bacterial Cytochrome Ubiquinol Oxidase YP_004441198.1 KEGG: hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504823950 YP_004441199.1 COGs: COG1438 Arginine repressor; HAMAP: Arginine repressor; InterPro IPR001669; KEGG: pmz:HMPREF0659_A6201 arginine repressor, C-terminal domain protein; PFAM: Arginine repressor; SPTR: Arginine repressor, C-terminal domain protein; IMG reference gene:2504823951; PFAM: Arginine repressor, C-terminal domain; Arginine repressor, DNA binding domain; TIGRFAM: arginine repressor YP_004441200.1 InterPro IPR005135; KEGG: pdi:BDI_2094 hypothetical protein; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase family protein; IMG reference gene:2504823952; PFAM: Endonuclease/Exonuclease/phosphatase family YP_004441201.1 COGs: COG3590 metalloendopeptidase; InterPro IPR008753:IPR018497; KEGG: pgn:PGN_0271 endopeptidase PepO; PFAM: Peptidase M13; Peptidase M13, neprilysin, C-terminal; PRIAM: Endothelin-converting enzyme 1; SPTR: Peptidase family M13; IMG reference gene:2504823953; PFAM: Peptidase family M13 YP_004441202.1 KEGG: pgi:PG0160 hypothetical protein; SPTR: Conserved domain protein; IMG reference gene:2504823954; PFAM: Nucleotidyl transferase YP_004441203.1 COGs: COG1854 LuxS protein involved in autoinducer AI2 synthesis; InterPro IPR003815; KEGG: pmz:HMPREF0659_A7345 S-ribosylhomocysteinase LuxS; PFAM: S-ribosylhomocysteinase (LuxS); PRIAM: S-ribosylhomocysteine lyase; SPTR: S-ribosylhomocysteinase LuxS; IMG reference gene:2504823955; PFAM: S-Ribosylhomocysteinase (LuxS) YP_004441204.1 COGs: COG3340 Peptidase E; InterPro IPR005320; KEGG: dda:Dd703_0257 peptidase E; PFAM: Peptidase S51, dipeptidase E; PRIAM: Dipeptidase E; SPTR: Peptidase E; IMG reference gene:2504823956; PFAM: Peptidase family S51 YP_004441205.1 COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR002205; KEGG: pgn:PGN_0472 DNA topoisomerase IV subunit A; PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit A or C-terminal; SPTR: DNA gyrase/topoisomerase IV, A subunit; IMG reference gene:2504823957; PFAM: DNA gyrase/topoisomerase IV, subunit A YP_004441206.1 KEGG: pgn:PGN_0471 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504823958 YP_004441207.1 COGs: COG0793 Periplasmic protease; InterPro IPR005151; KEGG: pgn:PGN_0470 hypothetical protein; PFAM: Peptidase S41; SMART: Peptidase S41; SPTR: Peptidase, S41 family; IMG reference gene:2504823959; PFAM: Peptidase family S41 YP_004441208.1 KEGG: fps:FP0168 cell surface leucine-rich repeat-containing protein; SPTR: uncharacterized protein; IMG reference gene:2504823961 YP_004441209.1 COGs: COG1035 Coenzyme F420-reducing hydrogenase beta subunit; InterPro IPR001450:IPR007525; KEGG: bth:BT_0041 F420H2:quinone oxidoreductase; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal; SPTR: 4Fe-4S binding domain protein; IMG reference gene:2504823962; PFAM: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus YP_004441210.1 SPTR: lipoprotein; IMG reference gene:2504823963 YP_004441211.1 COGs: COG0060 Isoleucyl-tRNA synthetase; HAMAP: Isoleucyl-tRNA synthetase; InterPro IPR002300:IPR013155:IPR002301; KEGG: pgn:PGN_0517 isoleucyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ia; Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; PRIAM: Isoleucine--tRNA ligase; SPTR: Isoleucine--tRNA ligase; TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; IMG reference gene:2504823964; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: isoleucyl-tRNA synthetase YP_004441212.1 KEGG: pgn:PGN_0516 DnaK suppressor protein; SPTR: DnaK suppressor protein; IMG reference gene:2504823965; PFAM: Prokaryotic dksA/traR C4-type zinc finger YP_004441213.1 COGs: COG0597 Lipoprotein signal peptidase; HAMAP: Peptidase A8, signal peptidase II; InterPro IPR001872; KEGG: pgn:PGN_0515 lipoprotein signal peptidase; SPTR: Signal peptidase II; IMG reference gene:2504823966; PFAM: Signal peptidase (SPase) II YP_004441214.1 SPTR: lipoprotein; IMG reference gene:2504823967 YP_004441215.1 SPTR: Conserved domain protein; IMG reference gene:2504823968 YP_004441216.1 COGs: COG0013 Alanyl-tRNA synthetase; InterPro IPR018164:IPR012947:IPR003156:IPR002318; KEGG: pgn:PGN_1381 alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1; SPTR: Alanine--tRNA ligase; TIGRFAM: Alanyl-tRNA synthetase, class IIc; IMG reference gene:2504823969; PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanine--tRNA ligase YP_004441217.1 COGs: COG0337 3-dehydroquinate synthetase; InterPro IPR002658; KEGG: pmz:HMPREF0659_A7146 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase AroB; PRIAM: 3-dehydroquinate synthase; SPTR: 3-dehydroquinate synthase; IMG reference gene:2504823970; PFAM: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase YP_004441218.1 COGs: COG0232 dGTP triphosphohydrolase; InterPro IPR003607:IPR006261; KEGG: pgi:PG2003 deoxyguanosinetriphosphate triphosphohydrolase; PRIAM: dGTPase; SMART: Metal-dependent phosphohydrolase, HD region; SPTR: dGTPase; TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase; IMG reference gene:2504823971; PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase YP_004441219.1 COGs: COG1066 ATP-dependent serine protease; InterPro IPR003593:IPR004504; KEGG: pgn:PGN_0330 DNA repair protein RadA; SMART: ATPase, AAA+ type, core; SPTR: DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; IMG reference gene:2504823972; PFAM: KaiC; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: DNA repair protein RadA YP_004441220.1 COGs: COG1834 N-Dimethylarginine dimethylaminohydrolase; InterPro IPR003198; KEGG: pgi:PG0228 DdaH family protein; PFAM: Amidinotransferase; SPTR: Amidinotransferase; IMG reference gene:2504823973; PFAM: Amidinotransferase YP_004441221.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: pgn:PGN_1798 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Methyltransferase domain protein; IMG reference gene:2504823974; PFAM: Methyltransferase domain YP_004441222.1 InterPro IPR001647; KEGG: transcriptional regulator, TetR family; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family protein; IMG reference gene:2504823975; PFAM: Bacterial regulatory proteins, tetR family YP_004441223.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: bfr:BF0628 TonB-linked outer membrane receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug domain protein; IMG reference gene:2504823976; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_004441224.1 KEGG: bfs:BF0577 lipoprotein; SPTR: lipoprotein; IMG reference gene:2504823977 YP_004441225.1 COGs: COG1283 Na+/phosphate symporter; InterPro IPR003841:IPR008170:IPR004633; KEGG: bvu:BVU_1423 Na+-dependent phosphate transporter; PFAM: Na/Pi-cotransporter; PhoU; SPTR: Na/Pi-cotransporter II-like protein; TIGRFAM: Na/Pi co-transporter II-related; IMG reference gene:2504823978; PFAM: PhoU domain; Na+/Pi-cotransporter; TIGRFAM: Na/Pi-cotransporter YP_004441226.1 COGs: COG0572 Uridine kinase; KEGG: pgn:PGN_0375 phosphoribulose/uridine kinase; SPTR: Phosphoribulokinase/uridine kinase family protein; IMG reference gene:2504823979; PFAM: Phosphoribulokinase / Uridine kinase family YP_004441227.1 COGs: COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related protein; InterPro IPR001950; KEGG: cpi:Cpin_0471 translation initiation factor SUI1; PFAM: Translation initiation factor SUI1; SPTR: translation initiation factor SUI1; IMG reference gene:2504823980; PFAM: Translation initiation factor SUI1; TIGRFAM: translation initation factor SUI1, , prokaryotic YP_004441228.1 COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: pgn:PGN_0025 probable SpoU rRNA methylase family protein; PFAM: tRNA/rRNA methyltransferase, SpoU; SPTR: RNA methyltransferase, TrmH family; IMG reference gene:2504823981; PFAM: SpoU rRNA Methylase family YP_004441229.1 InterPro IPR019707; KEGG: pdi:BDI_1894 hypothetical protein; PFAM: Protein of unknown function DUF2582; SPTR: uncharacterized protein; IMG reference gene:2504823982; PFAM: Protein of unknown function (DUF2582) YP_004441230.1 COGs: COG3176 hemolysin; InterPro IPR002123; KEGG: pgi:PG1876 hypothetical protein; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Acyltransferase; IMG reference gene:2504823984; PFAM: Acyltransferase YP_004441231.1 KEGG: bfs:BF0270 hemolysin A; SPTR: Hemolysin; IMG reference gene:2504823985 YP_004441232.1 COGs: COG0792 endonuclease distantly related to Holliday junction resolvase; HAMAP: Uncharacterised protein family UPF0102; InterPro IPR003509; KEGG: hypothetical protein; PFAM: Uncharacterised protein family UPF0102; SPTR: uncharacterized protein; IMG reference gene:2504823986; PFAM: Uncharacterised protein family UPF0102 YP_004441233.1 KEGG: bth:BT_2997 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504823987 YP_004441234.1 KEGG: cpi:Cpin_1613 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504823988 YP_004441235.1 IMG reference gene:2504823989 YP_004441236.1 COGs: COG5492 Bacterial surface protein containing Ig-like domains; InterPro IPR003343; KEGG: fjo:Fjoh_3203 Ig domain-containing protein; PFAM: Bacterial Ig-like, group 2; SMART: Bacterial Ig-like, group 2; SPTR: Bacterial group 2 Ig-like protein; IMG reference gene:2504823990; PFAM: Bacterial Ig-like domain (group 2) YP_004441237.1 COGs: COG1284 conserved hypothetical protein; InterPro IPR003740:IPR019264; KEGG: pgn:PGN_1885 hypothetical protein; PFAM: Protein of unknown function DUF2179; Protein of unknown function DUF161; SPTR: membrane protein; IMG reference gene:2504823992; PFAM: Uncharacterized BCR, YitT family COG1284; Uncharacterized protein conserved in bacteria (DUF2179) YP_004441238.1 COGs: COG1774 Uncharacterized homolog of PSP1; InterPro IPR007557; KEGG: bvu:BVU_1828 hypothetical protein; PFAM: PSP1, C-terminal; SPTR: PSP1 C-terminal domain protein; IMG reference gene:2504823993; PFAM: PSP1 C-terminal conserved region YP_004441239.1 InterPro IPR020018; KEGG: pgi:PG0399 lipoprotein; SPTR: Gliding motility-associated lipoprotein GldH; TIGRFAM: Gliding motility-associated lipoprotein, GldH; IMG reference gene:2504823994; TIGRFAM: gliding motility-associated lipoprotein GldH YP_004441240.1 KEGG: pgn:PGN_0458 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504823995 YP_004441241.1 KEGG: pgi:PG0082 hypothetical protein; SPTR: Conserved domain protein; IMG reference gene:2504823996 YP_004441242.1 KEGG: pgi:PG0083 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504823997 YP_004441243.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: pgn:PGN_1026 glycosyl transferase family 2; PFAM: Glycosyl transferase, family 2; PRIAM: Dolichyl-phosphate beta-D-mannosyltransferase; SPTR: Glycosyltransferase, group 2 family protein; IMG reference gene:2504823998; PFAM: Glycosyl transferase family 2 YP_004441244.1 COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR006680; KEGG: pgn:PGN_1027 dihydroorotase; PFAM: Amidohydrolase 1; PRIAM: Allantoinase; SPTR: Dihydroorotase; IMG reference gene:2504823999; PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase, multifunctional complex type YP_004441245.1 InterPro IPR004360:IPR017515; KEGG: pgn:PGN_0499 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Methylmalonyl-CoA epimerase; TIGRFAM: Methylmalonyl-CoA epimerase; IMG reference gene:2504824000; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase YP_004441246.1 COGs: COG4799 acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022; KEGG: pgn:PGN_0500 methylmalonyl-CoA decarboxylase alpha subunit; PFAM: Carboxyl transferase; PRIAM: Propionyl-CoA carboxylase; SPTR: Carboxyl transferase domain protein; IMG reference gene:2504824001; PFAM: Carboxyl transferase domain YP_004441247.1 SPTR: uncharacterized protein; IMG reference gene:2504824002 YP_004441248.1 COGs: COG4770 acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR000089; KEGG: pgn:PGN_0503 biotin carboxyl carrier protein; PFAM: Biotin/lipoyl attachment; SPTR: Glutaconyl-CoA decarboxylase subunit gamma; IMG reference gene:2504824003; PFAM: Biotin-requiring enzyme YP_004441249.1 SPTR: lipoprotein; IMG reference gene:2504824004 YP_004441250.1 COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR013766; KEGG: pgi:PG0275 thioredoxin family protein; PFAM: Thioredoxin domain; SPTR: thioredoxin; IMG reference gene:2504824005; PFAM: Thioredoxin; TIGRFAM: thioredoxin YP_004441251.1 COGs: COG2077 Peroxiredoxin; HAMAP: thiol peroxidase; InterPro IPR013740; KEGG: pgi:PG1729 thiol peroxidase; PFAM: Redoxin; SPTR: Redoxin family protein; IMG reference gene:2504824006; PFAM: Redoxin YP_004441252.1 InterPro IPR011871:IPR001611; KEGG: tde:TDE0593 internalin-related protein; SPTR: Conserved domain protein; IMG reference gene:2504824007; PFAM: Fibrobacter succinogenes major domain (Fib_succ_major); TIGRFAM: Fibrobacter succinogenes major paralogous domain YP_004441253.1 SPTR: uncharacterized protein; IMG reference gene:2504824008 YP_004441254.1 KEGG: pgn:PGN_0795 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824009 YP_004441255.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR011703; KEGG: pdi:BDI_0945 magnesium chelatase subunit I; PFAM: ATPase associated with various cellular activities, AAA-3; SPTR: ATPase, AAA family; IMG reference gene:2504824010; PFAM: ATPase family associated with various cellular activities (AAA) YP_004441256.1 COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: pgn:PGN_0531 von Willebrand factor type A; PFAM: Protein of unknown function DUF58; SPTR: uncharacterized protein; IMG reference gene:2504824011; PFAM: Protein of unknown function DUF58 YP_004441257.1 IMG reference gene:2504824012 YP_004441258.1 SPTR: uncharacterized protein; IMG reference gene:2504824013 YP_004441259.1 IMG reference gene:2504824014 YP_004441260.1 KEGG: ran:Riean_1595 yd repeat protein; SPTR: uncharacterized protein; IMG reference gene:2504824015 YP_004441261.1 SPTR: uncharacterized protein; IMG reference gene:2504824016 YP_004441262.1 KEGG: pgn:PGN_0530 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824017 YP_004441263.1 InterPro IPR002035; KEGG: pgn:PGN_0529 aerotolerance-related membrane protein BatA; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: von Willebrand factor type A domain protein; IMG reference gene:2504824018; PFAM: von Willebrand factor type A domain YP_004441264.1 InterPro IPR002035:IPR011933; KEGG: pgi:PG1583 BatB protein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: Double-transmembrane N-terminal domain protein; TIGRFAM: Double-transmembrane region, N-terminal; IMG reference gene:2504824019; PFAM: von Willebrand factor type A domain; TIGRFAM: N-terminal double-transmembrane domain YP_004441265.1 InterPro IPR013105:IPR019734; KEGG: pgn:PGN_0527 probable aerotolerance-related exported protein BatC; PFAM: Tetratricopeptide TPR2; SPTR: Tetratricopeptide repeat protein; IMG reference gene:2504824020; PFAM: Tetratricopeptide repeat YP_004441266.1 KEGG: pgn:PGN_0526 aerotolerance-related exported protein BatD; SPTR: uncharacterized protein; IMG reference gene:2504824021 YP_004441267.1 COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: aas:Aasi_1284 hypothetical protein; PFAM: Transposase, IS116/IS110/IS902; SPTR: Transposase, IS116/IS110/IS902 family; IMG reference gene:2504824022; PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_004441268.1 COGs: COG0442 Prolyl-tRNA synthetase; HAMAP: Prolyl-tRNA synthetase, class IIa, prokaryotic-type; InterPro IPR002314:IPR004154:IPR016061:IPR004499; KEGG: pgn:PGN_0987 prolyl-tRNA synthetase; PFAM: Prolyl-tRNA synthetase, class II, C-terminal; Anticodon-binding; Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; PRIAM: Proline--tRNA ligase; SPTR: Proline--tRNA ligase; TIGRFAM: Prolyl-tRNA synthetase, class IIa, prokaryotic-type; IMG reference gene:2504824023; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); Prolyl-tRNA synthetase, C-terminal; TIGRFAM: prolyl-tRNA synthetase, family I YP_004441269.1 COGs: COG0603 PP-loop superfamily ATPase; InterPro IPR018317:IPR004479; KEGG: pgn:PGN_1098 probable succinoglycan biosynthesis regulator ExsB protein; PFAM: Queuosine synthesis-like; SPTR: 7-cyano-7-deazaguanine synthase; TIGRFAM: Exoenzyme S synthesis protein B/queuosine synthesis; IMG reference gene:2504824024; PFAM: ExsB; TIGRFAM: queuosine biosynthesis protein QueC YP_004441270.1 COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; KEGG: pgi:PG0062 TPR domain-containing protein; SPTR: Tetratricopeptide repeat family protein; IMG reference gene:2504824025; PFAM: PIF1 helicase YP_004441271.1 COGs: COG0648 Endonuclease IV; HAMAP: Endodeoxyribonuclease IV; InterPro IPR012307:IPR001719; KEGG: pdi:BDI_1200 endonuclease IV; PFAM: Xylose isomerase, TIM barrel domain; PRIAM: Deoxyribonuclease IV (phage-T(4)-induced); SMART: Endodeoxyribonuclease IV; SPTR: Apurinic endonuclease (APN1); TIGRFAM: Endodeoxyribonuclease IV; IMG reference gene:2504824027; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: apurinic endonuclease (APN1) YP_004441272.1 COGs: COG0009 translation factor (SUA5); InterPro IPR006070:IPR004388; KEGG: pgi:PG1690 SUA5/YciO/YrdC/YwlC family protein; PFAM: Sua5/YciO/YrdC, N-terminal; SPTR: Sua5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; IMG reference gene:2504824028; PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein YP_004441273.1 KEGG: pgi:PG0081 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824029 YP_004441274.1 KEGG: pgi:PG1842 acetyltransferase; SPTR: uncharacterized protein; IMG reference gene:2504824030 YP_004441275.1 COGs: COG4866 conserved hypothetical protein; InterPro IPR016732; KEGG: pgi:PG1841 hypothetical protein; PFAM: Uncharacterised conserved protein UCP018688; SPTR: uncharacterized protein; IMG reference gene:2504824031; PFAM: Uncharacterized conserved protein (DUF2156) YP_004441276.1 COGs: COG2166 SufE protein probably involved in Fe-S center assembly; InterPro IPR003808; KEGG: pru:PRU_2850 Fe-S metabolism associated family protein; PFAM: Fe-S metabolism associated SufE; SPTR: Fe-S metabolism associated domain protein; IMG reference gene:2504824032; PFAM: Fe-S metabolism associated domain YP_004441277.1 COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: pgn:PGN_0202 probable leucine aminopeptidase precursor; PFAM: Peptidase M28; SPTR: Peptidase, M28 family; IMG reference gene:2504824033; PFAM: Peptidase family M28 YP_004441278.1 COGs: COG2109 ATP:corrinoid adenosyltransferase; InterPro IPR003724; KEGG: ppn:Palpr_0789 cob(I)yrinic acid a,c-diamide adenosyltransferase; PFAM: adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; SPTR: cob(I)yrinic acid a,c-diamide adenosyltransferase; IMG reference gene:2504824034; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; TIGRFAM: cob(I)alamin adenosyltransferase YP_004441279.1 COGs: COG4783 Zn-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: pgn:PGN_2064 peptidase M48 family; PFAM: Peptidase M48, Ste24p; SPTR: Peptidase, M48 family; IMG reference gene:2504824035; PFAM: Peptidase family M48 YP_004441280.1 KEGG: pdi:BDI_2595 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824036; PFAM: OmpA family YP_004441281.1 KEGG: pgn:PGN_0129 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824037; PFAM: Protein of unknown function (DUF3575) YP_004441282.1 COGs: COG2871 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrF; InterPro IPR001041:IPR008333:IPR001433:IPR010205; KEGG: pgn:PGN_0119 Na(+)-translocating NADH-quinone reductase subunit F; PFAM: Oxidoreductase FAD/NAD(P)-binding; Ferredoxin; Oxidoreductase FAD-binding region; PRIAM: Ferredoxin--NAD(+) reductase; SPTR: NADH:ubiquinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone reductase, Na(+)-translocating, F subunit; IMG reference gene:2504824038; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit YP_004441283.1 COGs: COG2209 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrE; InterPro IPR003667:IPR010967; KEGG: pgn:PGN_0118 Na(+)-translocating NADH-quinone reductase subunit E; PFAM: Electron transport complex, Rnf/Nqr; SPTR: NADH:ubiquinone oxidoreductase, E subunit; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit; IMG reference gene:2504824039; PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit YP_004441284.1 COGs: COG1347 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrD; InterPro IPR003667:IPR011292; KEGG: pdi:BDI_1122 Na(+)-translocating NADH-quinone reductase subunit D; PFAM: Electron transport complex, Rnf/Nqr; SPTR: NADH:ubiquinone oxidoreductase, D subunit; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit; IMG reference gene:2504824040; PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit YP_004441285.1 COGs: COG2869 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrC; InterPro IPR007329:IPR010204; KEGG: pgn:PGN_0116 Na(+)-translocating NADH-quinone reductase subunit C; PFAM: FMN-binding; SPTR: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit; IMG reference gene:2504824041; PFAM: FMN-binding domain; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit YP_004441286.1 COGs: COG1805 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrB; InterPro IPR004338:IPR010966; KEGG: pgi:PG2181 Na(+)-translocating NADH-quinone reductase subunit B; PFAM: NADH-quinone reductase NQR2/RnfD; SPTR: NADH:ubiquinone oxidoreductase, B subunit; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit; IMG reference gene:2504824042; PFAM: NQR2, RnfD, RnfE family; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit YP_004441287.1 COGs: COG1726 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrA; HAMAP: Na(+)-translocating NADH-quinone reductase subunit A; InterPro IPR008703; KEGG: pgi:PG2182 Na(+)-translocating NADH-quinone reductase subunit A; PFAM: Na-translocating NADH-quinone reductase subunit A; SPTR: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit; TIGRFAM: Na-translocating NADH-quinone reductase subunit A; IMG reference gene:2504824043; PFAM: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); NQRA C-terminal domain; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit YP_004441288.1 InterPro IPR012944; KEGG: pgn:PGN_0294 receptor antigen B; PFAM: RagB/SusD; SPTR: SusD family protein; IMG reference gene:2504824044; PFAM: SusD family YP_004441289.1 InterPro IPR012910:IPR000531; KEGG: pgn:PGN_0293 receptor antigen A; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-linked outer membrane protein, SusC/RagA family; IMG reference gene:2504824045; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family YP_004441290.1 KEGG: pgn:PGN_1416 probable lysyl endopeptidase precursor; SPTR: Extracellular protease family protein; IMG reference gene:2504824046 YP_004441291.1 COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; InterPro IPR002903; KEGG: pdi:BDI_2494 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; SPTR: S-adenosyl-methyltransferase MraW; TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; IMG reference gene:2504824047; PFAM: MraW methylase family; TIGRFAM: S-adenosyl-methyltransferase MraW YP_004441292.1 KEGG: pgi:PG0574 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824048 YP_004441293.1 COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR001460:IPR005543; KEGG: pgn:PGN_0622 penicillin-binding protein; PFAM: Penicillin-binding protein, transpeptidase; PASTA; PRIAM: Peptidoglycan glycosyltransferase; SMART: PASTA; SPTR: Penicillin-binding protein, transpeptidase domain protein; IMG reference gene:2504824049; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; PASTA domain YP_004441294.1 COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; HAMAP:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-di aminopimelateligase; InterPro IPR000713:IPR013221:IPR004101:IPR005761; KEGG: pgn:PGN_0623 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelateligase; SPTR: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelateligase; IMG reference gene:2504824050; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase YP_004441295.1 COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; HAMAP: Phospho-N-acetylmuramoyl-pentapeptide transferase; InterPro IPR018480:IPR018481:IPR003524; KEGG: pgi:PG0577 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; SPTR:Phospho-N-acetylmuramoyl-pentapeptide-transfer ase; TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase; IMG reference gene:2504824051; PFAM: Glycosyl transferase family 4; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase YP_004441296.1 COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; HAMAP: UDP-N-acetylmuramoylalanine-D-glutamate ligase; InterPro IPR013221:IPR004101:IPR005762; KEGG: pgi:PG0578 UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: Mur ligase, central; Mur ligase, C-terminal; PRIAM: UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; SPTR: UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; IMG reference gene:2504824052; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_004441297.1 COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: pgi:PG0579 cell division protein FtsW, PFAM: Cell cycle protein; SPTR: Cell cycle protein, FtsW/RodA/SpoVE family; IMG reference gene:2504824053; PFAM: Cell cycle protein YP_004441298.1 COGs: COG0169 Shikimate 5-dehydrogenase; InterPro IPR013708:IPR006151; KEGG: bvu:BVU_2541 shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; SPTR: shikimate dehydrogenase; IMG reference gene:2504824054; PFAM: Shikimate dehydrogenase substrate binding domain; TIGRFAM: shikimate 5-dehydrogenase YP_004441299.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR004033; KEGG: demethylmenaquinone methyltransferase; PFAM: UbiE/COQ5 methyltransferase; SPTR: Ubiquinone/menaquinone biosynthesis methyltransferase; TIGRFAM: UbiE/COQ5 methyltransferase; IMG reference gene:2504824055; PFAM: ubiE/COQ5 methyltransferase family; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases YP_004441300.1 COGs: COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; HAMAP: Phosphoribosylaminoimidazole-succinocarboxamide synthase; InterPro IPR001636; KEGG: pgn:PGN_0976 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; PRIAM: Phosphoribosylaminoimidazolesuccinocarboxamide synthase; SPTR: Phosphoribosylaminoimidazolesuccinocarboxamide synthase; IMG reference gene:2504824056; PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase YP_004441301.1 COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase; InterPro IPR003714; KEGG: pgi:PG0975 PhoH family protein; PFAM: PhoH-like protein; SPTR: PhoH-like protein; IMG reference gene:2504824057; PFAM: PhoH-like protein YP_004441302.1 COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310; KEGG: pdi:BDI_2757 histidine triad (HIT) family protein; PFAM: Histidine triad (HIT) protein; SPTR: uncharacterized protein; IMG reference gene:2504824058; PFAM: HIT domain YP_004441303.1 COGs: COG0782 Transcription elongation factor; HAMAP: Transcription elongation factor greA; InterPro IPR001437:IPR006359; KEGG: pgn:PGN_0423 transcription elongation factor; PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic; SPTR: Transcription elongation factor GreA; TIGRFAM: Prokaryotic transcription elongation factor GreA; tmRNA as predicted by Rfam (RF00023), score 116.02; IMG reference gene:2504824059; PFAM: domain; Transcription elongation factor, GreA/GreB, C-term; TIGRFAM: transcription elongation factor GreA YP_004441304.1 COGs: COG0657 Esterase/lipase; KEGG: fma:FMG_1381 esterase; SPTR: uncharacterized protein; IMG reference gene:2504824060; PFAM: alpha/beta hydrolase fold YP_004441305.1 COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543:IPR018541; KEGG: pgn:PGN_0487 FtsK/SpoIIIE family cell division protein; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SPTR: stage III sporulation protein E; IMG reference gene:2504824061; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family YP_004441306.1 KEGG: dfe:Dfer_3188 outer membrane lipoprotein carrier protein LolA; SPTR: uncharacterized protein; IMG reference gene:2504824062; PFAM: Outer membrane lipoprotein carrier protein LolA YP_004441307.1 COGs: COG0853 aspartate 1-decarboxylase; HAMAP: aspartate decarboxylase; InterPro IPR003190; KEGG: bth:BT_4309 aspartate alpha-decarboxylase; PFAM: aspartate decarboxylase; PRIAM: aspartate 1-decarboxylase; SPTR: aspartate 1-decarboxylase; TIGRFAM: aspartate decarboxylase; IMG reference gene:2504824063; PFAM: aspartate decarboxylase; TIGRFAM: L-aspartate-alpha-decarboxylase YP_004441308.1 COGs: COG0541 Signal recognition particle GTPase; InterProIPR013822:IPR000897:IPR004125:IPR003593:IPR 004780; KEGG: pgi:PG1115 signal recognition particle protein; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; SMART: ATPase, AAA+ type, core; SPTR: Signal recognition particle protein; TIGRFAM: Signal recognition particle, SRP; IMG reference gene:2504824064; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein YP_004441309.1 SPTR: uncharacterized protein; IMG reference gene:2504824065 YP_004441310.1 InterPro IPR004134; KEGG: pgi:PG1788 cysteine peptidase, PFAM: Peptidase C1B, bleomycin hydrolase; SPTR: Peptidase C1-like family; IMG reference gene:2504824066; PFAM: Peptidase C1-like family; Papain family cysteine protease YP_004441311.1 COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047:IPR018392:IPR002482; KEGG: pgi:PG2192 M24/M37 family peptidase; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Peptidase, M23/M37 family; IMG reference gene:2504824067; PFAM: Peptidase family M23; LysM domain YP_004441312.1 COGs: COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); InterPro IPR000667; KEGG: pgn:PGN_0896 probable D-alanyl-D-alanine carboxypeptidase; PFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; SPTR: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; IMG reference gene:2504824068; PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family YP_004441313.1 COGs: COG2087 adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase; InterPro IPR013078:IPR003203; KEGG: cts:Ctha_1963 cobalbumin biosynthesis protein; PFAM: Phosphoglycerate mutase; Cobinamide kinase/cobinamide phosphate guanyltransferase; SPTR: Phosphoglycerate mutase family protein; IMG reference gene:2504824069; PFAM: Cobinamide kinase / cobinamide phosphate guanyltransferase; Phosphoglycerate mutase family YP_004441314.1 COGs: COG2038 NaMN:DMB phosphoribosyltransferase; InterPro IPR003200:IPR017846; KEGG: cpi:Cpin_4484 nicotinate-nucleotide/dimethylbenzimidazolephosp horibosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like, core; PRIAM: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; SPTR: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM:Nicotinate-nucleotide- dimethylbenzimidazole phosphoribosyltransferase, core, prokaryotic; IMG reference gene:2504824070; PFAM: Phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_004441315.1 COGs: COG0368 Cobalamin-5-phosphate synthase; HAMAP: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; InterPro IPR003805; KEGG: slo:Shew_0715 cobalamin 5'-phosphate synthase; PFAM: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; SPTR: adenosylcobinamide-GDP ribazoletransferase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; IMG reference gene:2504824071; PFAM: Cobalamin-5-phosphate synthase; TIGRFAM: cobalamin 5'-phosphate synthase/cobalamin synthase YP_004441316.1 COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: bvu:BVU_3148 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase; SPTR: Phosphoglycerate mutase family protein; IMG reference gene:2504824072; PFAM: Phosphoglycerate mutase family YP_004441317.1 COGs: COG1492 Cobyric acid synthase; HAMAP: Cobyric acid synthase CobQ; InterPro IPR002586:IPR011698:IPR004459; KEGG: pdi:BDI_1360 cobyric acid synthase; PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase; SPTR: Cobyric acid synthase CobQ; TIGRFAM: Cobyric acid synthase CobQ; IMG reference gene:2504824073; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyric acid synthase CobQ YP_004441318.1 COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839; KEGG: cpi:Cpin_4468 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; SPTR: Aminotransferase, class I/II; IMG reference gene:2504824074; PFAM: Aminotransferase class I and II YP_004441319.1 COGs: COG1270 Cobalamin biosynthesis protein CobD/CbiB; HAMAP: Cobalamin biosynthesis protein cbiB; InterPro IPR004485; KEGG: cpi:Cpin_4469 cobalamin biosynthesis protein CobD; PFAM: Cobalamin (vitamin B12) biosynthesis CbiB; SPTR: Cobalamin biosynthesis protein CobD; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CbiB; IMG reference gene:2504824075; PFAM: CobD/Cbib protein; TIGRFAM: cobalamin biosynthesis protein CobD YP_004441320.1 COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667:IPR003156; KEGG: pgi:PG1091 DHH subfamily 1 protein; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; SPTR: DHHA1 domain protein; IMG reference gene:2504824076; PFAM: DHH family; DHHA1 domain YP_004441321.1 KEGG: pgn:PGN_1188 hypothetical protein; SPTR: lipoprotein; IMG reference gene:2504824077 YP_004441322.1 COGs: COG1109 Phosphomannomutase; InterPro IPR005844:IPR005845:IPR005846:IPR005843; KEGG: pgn:PGN_1189 phosphoglucomutase/phosphomannomutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; PRIAM: Phosphoglucosamine mutase; SPTR: Phosphoglucosamine mutase; IMG reference gene:2504824078; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; TIGRFAM: phosphoglucosamine mutase YP_004441323.1 COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR002792:IPR010280:IPR001566; KEGG: pgn:PGN_1190 RNA methyltransferase; PFAM: (Uracil-5)-methyltransferase; Deoxyribonuclease/rho motif-related TRAM; SPTR: 23S rRNA (Uracil-5-)-methyltransferase RumA; TIGRFAM: 23S rRNA methyltransferase/RumA; IMG reference gene:2504824079; PFAM: TRAM domain; tRNA (Uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA YP_004441324.1 InterPro IPR007419; KEGG: apr:Apre_1780 BFD domain protein (2Fe-2S)-binding domain protein; PFAM: BFD-like [2Fe-2S]-binding region; SPTR: BFD domain protein (2Fe-2S)-binding domain protein; IMG reference gene:2504824080; PFAM: BFD-like [2Fe-2S] binding domain YP_004441325.1 KEGG: pgn:PGN_0968 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824081 YP_004441326.1 KEGG: pgi:PG0986 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824082 YP_004441327.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: pgi:PG0985 ECF subfamily RNA polymerase sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-70; IMG reference gene:2504824083; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004441328.1 IMG reference gene:2504824084 YP_004441329.1 KEGG: pgi:PG1374 immunoreactive 47 kDa antigen PG97; SPTR: Leucine rich repeat protein; IMG reference gene:2504824085 YP_004441330.1 COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase; IMG reference gene:2504824086; PFAM: Transposase YP_004441331.1 KEGG: lby:Lbys_0995 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824087 YP_004441332.1 KEGG: pgi:PG2083 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824088 YP_004441333.1 COGs: COG3104 Dipeptide/tripeptide permease; InterPro IPR000109; KEGG: bfs:BF2632 transport-related membrane protein; PFAM: Oligopeptide transporter; SPTR: POT family protein; IMG reference gene:2504824089; PFAM: POT family; TIGRFAM: amino acid/peptide transporter (Peptide:H+ symporter), bacterial YP_004441334.1 COGs: COG0502 Biotin synthase; HAMAP: Biotin synthase; InterPro IPR007197:IPR010722:IPR006638:IPR002684; KEGG: pgi:PG2081 biotin synthetase; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; PRIAM: Biotin synthase; SMART: Elongator protein 3/MiaB/NifB; SPTR: Biotin synthase; TIGRFAM: Biotin synthase; IMG reference gene:2504824090; PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: biotin synthetase YP_004441335.1 COGs: COG0161 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; InterPro IPR005814:IPR005815; KEGG: pgn:PGN_0133 adenosylmethionine--8-amino-7-oxononanoate transaminase; PFAM: Aminotransferase class-III; PRIAM: adenosylmethionine--8-amino-7-oxononanoate transaminase; SPTR: adenosylmethionine-8-amino-7-oxononanoate transaminase; TIGRFAM: adenosylmethionine--8-amino-7-oxononanoate aminotransferase; IMG reference gene:2504824091; PFAM: Aminotransferase class-III; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate transaminase YP_004441336.1 COGs: COG1232 Protoporphyrinogen oxidase; InterPro IPR002937:IPR004572; KEGG: pgi:PG2159 protoporphyrinogen oxidase; PFAM: Amine oxidase; PRIAM: Protoporphyrinogen oxidase; SPTR: Protoporphyrinogen oxidase; TIGRFAM: Protoporphyrinogen oxidase; IMG reference gene:2504824092; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: protoporphyrinogen oxidase YP_004441337.1 COGs: COG0082 Chorismate synthase; InterPro IPR000453; KEGG: pru:PRU_0544 chorismate synthase; PFAM: Chorismate synthase; PRIAM: Chorismate synthase; SPTR: Chorismate synthase; TIGRFAM: Chorismate synthase; IMG reference gene:2504824093; PFAM: Chorismate synthase; TIGRFAM: chorismate synthase YP_004441338.1 COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; InterPro IPR001179; KEGG: pgn:PGN_1105 probable FKBP-type peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: FKBP-type peptidyl-prolyl cis-trans isomerase SlyD; IMG reference gene:2504824094; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase YP_004441339.1 COGs: COG0826 Collagenase and related protease; InterPro IPR001539; KEGG: pgn:PGN_0780 PrtQ, protease; PFAM: Peptidase U32; SPTR: Peptidase, U32 family; IMG reference gene:2504824095; PFAM: Collagenase; Peptidase family U32 YP_004441340.1 COGs: COG0035 Uracil phosphoribosyltransferase; KEGG: ppn:Palpr_2051 uracil phosphoribosyltransferase; SPTR: uracil phosphoribosyltransferase; IMG reference gene:2504824096; PFAM: Phosphoribosyl transferase domain; TIGRFAM: uracil phosphoribosyltransferase YP_004441341.1 KEGG: pgn:PGN_0778 membrane-associated protein PorT; SPTR: PorT protein; manually curated; IMG reference gene:2504824097 YP_004441342.1 COGs: COG0763 Lipid A disaccharide synthetase; InterPro IPR003835; KEGG: pgn:PGN_0206 lipid A disaccharide synthase; PFAM: Glycosyl transferase, family 19; PRIAM: Lipid-A-disaccharide synthase; SPTR: Lipid-A-disaccharide synthase; TIGRFAM: Glycosyl transferase, family 19; IMG reference gene:2504824098; PFAM: Lipid-A-disaccharide synthetase; TIGRFAM: lipid-A-disaccharide synthase YP_004441343.1 COGs: COG0496 acid phosphatase; HAMAP: Multifunctional protein surE; InterPro IPR002828; KEGG: pgn:PGN_0207 stationary phase survival protein SurE; PFAM: Survival protein SurE-like phosphatase/nucleotidase; SPTR: 5'/3'-nucleotidase SurE; TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; IMG reference gene:2504824099; PFAM: Survival protein SurE; TIGRFAM: 5'/3'-nucleotidase SurE YP_004441344.1 COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179; KEGG: pgn:PGN_0208 hypothetical protein; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase, FKBP-type; IMG reference gene:2504824100; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase YP_004441345.1 COGs: COG0423 Glycyl-tRNA synthetase (class II); InterPro IPR002314:IPR004154:IPR002315; KEGG: bvu:BVU_0207 glycyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Anticodon-binding; SPTR: Glycine--tRNA ligase; TIGRFAM: Glycyl-tRNA synthetase, alpha2 dimer; IMG reference gene:2504824101; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: glycyl-tRNA synthetase, dimeric type YP_004441346.1 COGs: COG1040 amidophosphoribosyltransferase; KEGG: pgi:PG0158 competence protein F-related protein; SPTR: ComF family protein; IMG reference gene:2504824102; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein YP_004441347.1 COGs: COG2137 conserved hypothetical protein; HAMAP: Regulatory protein recX; InterPro IPR003783; KEGG: pgn:PGN_0269 transcriptional regulatory protein; PFAM: Regulatory protein RecX; SPTR: Regulatory protein RecX; IMG reference gene:2504824103; PFAM: RecX family YP_004441348.1 COGs: COG2890 Methylase of polypeptide chain release factors; InterPro IPR013216:IPR004556; KEGG: dfe:Dfer_4319 modification methylase, HemK family; PFAM: Methyltransferase type 11; SPTR: Methyltransferase, HemK family; TIGRFAM: Modification methylase HemK; IMG reference gene:2504824104; PFAM: Methyltransferase small domain; TIGRFAM: HemK family methylases YP_004441349.1 COGs: COG0117 Pyrimidine deaminase; InterPro IPR002125:IPR002734:IPR004794; KEGG: pgi:PG0155 riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; Bacterial bifunctional deaminase-reductase, C-terminal; PRIAM: Diaminohydroxyphosphoribosylaminopyrimidine deaminase., 5-amino-6-(5-phosphoribosylamino)uracil reductase; SPTR: Riboflavin biosynthesis protein RibD; TIGRFAM: Riboflavin biosynthesis protein RibD; manually curated; IMG reference gene:2504824105; PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflavin biosynthesis protein RibD YP_004441350.1 COGs: COG2217 Cation transport ATPase; InterProIPR006121:IPR008250:IPR005834:IPR006403:IPR 006416:IPR001757; KEGG: pgn:PGN_0492 cation-transporting ATPase; PFAM: ATPase, P-type, ATPase-associated region; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: Copper-exporting ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; IMG reference gene:2504824106; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_004441351.1 IMG reference gene:2504824107 YP_004441352.1 KEGG: pgn:PGN_0022 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824108; PFAM: Peptidase family C25 YP_004441353.1 KEGG: pdi:BDI_3508 cytochrome c biogenesis protein; SPTR: membrane protein; IMG reference gene:2504824109 YP_004441354.1 InterPro IPR006055; KEGG: pgn:PGN_0283 probable exonuclease; SMART: Exonuclease; SPTR: uncharacterized protein; IMG reference gene:2504824110 YP_004441355.1 COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR004843:IPR008334; KEGG: pgn:PGN_0282 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor; PFAM: 5'-Nucleotidase, C-terminal; Metallophosphoesterase; PRIAM: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; SPTR: 5'-nucleotidase, C-terminal domain protein; IMG reference gene:2504824111; PFAM: Calcineurin-like phosphoesterase; 5'-nucleotidase, C-terminal domain YP_004441356.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: ppn:Palpr_0599 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase, NAD-binding domain protein; IMG reference gene:2504824112; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain YP_004441357.1 COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: ran:Riean_0385 DegT/DnrJ/eryc1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: erythromycin biosynthesis sensory transduction protein EryC1; IMG reference gene:2504824113; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family YP_004441358.1 COGs: COG0143 Methionyl-tRNA synthetase; HAMAP: Methionyl-tRNA synthetase; InterPro IPR015413:IPR002547:IPR002304:IPR004495; KEGG: pgn:PGN_0281 methionyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding region; PRIAM: Methionine--tRNA ligase; SPTR: Methionine--tRNA ligase; TIGRFAM: Methionyl-tRNA synthetase, class Ia; Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal; IMG reference gene:2504824114; PFAM: Anticodon-binding domain; tRNA synthetases class I (M); tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; methionyl-tRNA synthetase YP_004441359.1 InterPro IPR003343; KEGG: pdi:BDI_0329 hypothetical protein; PFAM: Bacterial Ig-like, group 2; SMART: Bacterial Ig-like, group 2; SPTR: Bacterial group 2 Ig-like protein; IMG reference gene:2504824115; PFAM: Bacterial Ig-like domain (group 2) YP_004441360.1 InterPro IPR000866; KEGG: pgi:PG2175 hypothetical protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Antioxidant, AhpC/TSA family; IMG reference gene:2504824116; PFAM: AhpC/TSA family YP_004441361.1 KEGG: pgn:PGN_0121 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824117 YP_004441362.1 KEGG: pgi:PG2173 outer membrane lipoprotein Omp28; SPTR: lipoprotein; IMG reference gene:2504824118; PFAM: Outer membrane protein Omp28 YP_004441363.1 InterPro IPR013766:IPR003343; PFAM: Thioredoxin domain; Bacterial Ig-like, group 2; SPTR: uncharacterized protein; IMG reference gene:2504824119 YP_004441364.1 COGs: COG0151 Phosphoribosylamine-glycine ligase; HAMAP: Phosphoribosylglycinamide synthetase; InterPro IPR020562:IPR020561:IPR020560:IPR000115; KEGG: pgi:PG1360 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; PRIAM: Phosphoribosylamine--glycine ligase; SPTR: Phosphoribosylamine--glycine ligase; TIGRFAM: Phosphoribosylglycinamide synthetase; IMG reference gene:2504824120; PFAM: Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase YP_004441365.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469:IPR001375; KEGG: pgn:PGN_1149 prolyl tripeptidase A; PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; Peptidase S9, prolyl oligopeptidase, catalytic domain; PRIAM: Dipeptidyl-peptidase IV; SPTR: Peptidase, S9A/B/C family, catalytic domain protein; IMG reference gene:2504824121; PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region YP_004441366.1 COGs: COG0116 N6-adenine-specific DNA methylase; InterPro IPR004114:IPR000241; KEGG: pgi:PG1362 hypothetical protein; PFAM: RNA methylase; THUMP; PRIAM: rRNA (guanine-N(2)-)-methyltransferase; SPTR: THUMP domain protein; IMG reference gene:2504824122; PFAM: RNA methylase family UPF0020; THUMP domain YP_004441367.1 COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; HAMAP: tRNA(Ile)-lysidine synthase; InterPro IPR011063:IPR012795; KEGG: bvu:BVU_2888 cell-cycle protein; PFAM: PP-loop; SPTR: tRNA(Ile)-lysidine synthetase; TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; IMG reference gene:2504824123; PFAM: PP-loop family; TIGRFAM: tRNA(Ile)-lysidine synthetase, N-terminal domain YP_004441368.1 COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: pgn:PGN_1990 hypothetical protein; PFAM: Protein of unknown function DUF164; SPTR: Zinc ribbon domain protein; IMG reference gene:2504824124; PFAM: zinc ribbon domain YP_004441369.1 COGs: COG0327 conserved hypothetical protein; InterPro IPR002678; KEGG: pgn:PGN_1989 hypothetical protein; PFAM: NGG1p interacting factor 3, NIF3; SPTR: Dinuclear metal center protein, YbgI family; TIGRFAM: NGG1p interacting factor 3, NIF3; IMG reference gene:2504824125; PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: dinuclear metal center protein, YbgI/SA1388 family YP_004441370.1 COGs: COG0173 Aspartyl-tRNA synthetase; InterPro IPR004365:IPR004364:IPR004115:IPR004524; KEGG: bvu:BVU_3220 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain; PRIAM: aspartate--tRNA ligase; SPTR: aspartate--tRNA ligase; TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; IMG reference gene:2504824126; PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type YP_004441371.1 COGs: COG0428 divalent heavy-metal cations transporter; HAMAP: Zinc transporter zupT; InterPro IPR003689; KEGG: cdl:CDR20291_0946 zinc transporter ZupT; PFAM: Zinc/iron permease; SPTR: Metal cation transporter, ZIP family; IMG reference gene:2504824127; PFAM: ZIP Zinc transporter YP_004441372.1 COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR002523; KEGG: bfs:BF0240 cationic transporter; PFAM: Mg2+ transporter protein, CorA-like; SPTR: CorA-like protein; IMG reference gene:2504824128; PFAM: CorA-like Mg2+ transporter protein YP_004441373.1 IMG reference gene:2504824129 YP_004441374.1 IMG reference gene:2504824130 YP_004441375.1 COGs: COG0021 Transketolase; InterPro IPR005474:IPR005475:IPR005476; KEGG: pgi:PG1748 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: Formaldehyde transketolase; SPTR: Transketolase, thiamine diphosphate binding domain protein; IMG reference gene:2504824131; PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain YP_004441376.1 InterPro IPR019734; KEGG: pgi:PG1212 TPR domain-containing protein; SPTR: Tetratricopeptide repeat protein; IMG reference gene:2504824132 YP_004441377.1 COGs: COG3341 double-stranded RNA/RNA-DNA hybrid binding protein; KEGG: bvu:BVU_1080 ribonuclease H1; SPTR: Ribonuclease H; IMG reference gene:2504824133; PFAM: RNase H; Caulimovirus viroplasmin YP_004441378.1 KEGG: pgn:PGN_0910 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824134 YP_004441379.1 COGs: COG0264 Translation elongation factor Ts; HAMAP: Elongation factor Ts; InterPro IPR000449:IPR014039:IPR001816; KEGG: pgn:PGN_1587 elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal; SPTR: Translation elongation factor Ts; TIGRFAM: Translation elongation factor EFTs/EF1B; IMG reference gene:2504824135; PFAM: Elongation factor TS; UBA/TS-N domain; TIGRFAM: translation elongation factor Ts YP_004441380.1 COGs: COG0052 Ribosomal protein S2; InterPro IPR001865:IPR005706; KEGG: pgn:PGN_1588 30S ribosomal protein S2; PFAM: Ribosomal protein S2; SPTR: Ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; IMG reference gene:2504824136; PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type YP_004441381.1 COGs: COG0103 Ribosomal protein S9; InterPro IPR000754; KEGG: pgn:PGN_1589 30S ribosomal protein S9; PFAM: Ribosomal protein S9; SPTR: Ribosomal protein S9; IMG reference gene:2504824137; PFAM: Ribosomal protein S9/S16 YP_004441382.1 COGs: COG0102 Ribosomal protein L13; InterPro IPR005822:IPR005823; KEGG: pgi:PG0375 50S ribosomal protein L13; PFAM: Ribosomal protein L13; SPTR: Ribosomal protein L13; TIGRFAM: Ribosomal protein L13, bacterial-type; IMG reference gene:2504824138; PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type YP_004441383.1 COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterPro IPR002192:IPR008279:IPR000121:IPR010121; KEGG: pyruvate phosphate dikinase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region; PEP-utilising enzyme; PRIAM: Pyruvate, phosphate dikinase; SPTR: Pyruvate, phosphate dikinase; TIGRFAM: Pyruvate, phosphate dikinase; IMG reference gene:2504824139; PFAM: PEP-utilising enzyme, mobile domain; PEP-utilising enzyme, TIM barrel domain; Pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: pyruvate, phosphate dikinase YP_004441384.1 KEGG: pdi:BDI_1105 outer membrane receptor protein involved in Fe transport; SPTR: uncharacterized protein; IMG reference gene:2504824141 YP_004441385.1 KEGG: hypothetical protein; SPTR: membrane protein; IMG reference gene:2504824142 YP_004441386.1 COGs: COG0029 aspartate oxidase; InterPro IPR003953:IPR004112:IPR005288; KEGG: pgn:PGN_0535 L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; PRIAM: L-aspartate oxidase; SPTR: L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; IMG reference gene:2504824143; PFAM: domain; FAD binding domain; TIGRFAM: L-aspartate oxidase YP_004441387.1 COGs: COG0157 Nicotinate-nucleotide pyrophosphorylase; InterPro IPR002638:IPR004393; KEGG: pgn:PGN_0534 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; PRIAM: Nicotinate-nucleotide diphosphorylase (carboxylating); SPTR: Nicotinate-nucleotide diphosphorylase (Carboxylating); TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; IMG reference gene:2504824144; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase YP_004441388.1 COGs: COG0379 Quinolinate synthase; InterPro IPR003473; KEGG: pgn:PGN_0533 quinolinate synthetase; PFAM: Quinolinate synthetase A; PRIAM: Quinolinate synthase; SPTR: Quinolinate synthetase complex, A subunit; TIGRFAM: Quinolinate synthetase A; IMG reference gene:2504824145; PFAM: Quinolinate synthetase A protein; TIGRFAM: quinolinate synthetase complex, A subunit YP_004441389.1 IMG reference gene:2504824146 YP_004441390.1 COGs: COG0691 tmRNA-binding protein; HAMAP: SsrA-binding protein; InterPro IPR000037; KEGG: pgn:PGN_1470 SsrA-binding protein; PFAM: SsrA-binding protein; SPTR: SsrA-binding protein; TIGRFAM: SsrA-binding protein; IMG reference gene:2504824147; PFAM: SmpB protein; TIGRFAM: SsrA-binding protein YP_004441391.1 COGs: COG0172 Seryl-tRNA synthetase; InterPro IPR015866:IPR002314:IPR002317; KEGG: pgi:PG0316 seryl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Seryl-tRNA synthetase, class IIa, N-terminal; PRIAM: Serine--tRNA ligase; SPTR: Serine--tRNA ligase; TIGRFAM: Seryl-tRNA synthetase, class IIa; IMG reference gene:2504824148; PFAM: Seryl-tRNA synthetase N-terminal domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: seryl-tRNA synthetase YP_004441392.1 InterPro IPR004692; KEGG: pdi:BDI_0195 preprotein translocase subunit SecG; PFAM: Preprotein translocase SecG subunit; SPTR: Preprotein translocase, SecG subunit; TIGRFAM: Preprotein translocase SecG subunit; IMG reference gene:2504824149; PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit YP_004441393.1 KEGG: pgi:PG0146 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824150 YP_004441394.1 KEGG: ppn:Palpr_1181 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824151 YP_004441395.1 COGs: COG3829 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains; InterPro IPR002078:IPR002197:IPR003593; KEGG: bvu:BVU_2609 transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; SPTR: Sigma-54 interaction domain protein; IMG reference gene:2504824152; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004441396.1 COGs: COG0703 Shikimate kinase; HAMAP: Shikimate kinase; InterPro IPR000623; KEGG: pgn:PGN_0520 shikimate kinase; PFAM: Shikimate kinase; PRIAM: Shikimate kinase; SPTR: Shikimate kinase; IMG reference gene:2504824153; PFAM: Shikimate kinase YP_004441397.1 COGs: COG1480 membrane-associated HD superfamily hydrolase; InterPro IPR011621:IPR006674:IPR003607:IPR006675; KEGG: pgn:PGN_0521 hypothetical protein; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; Metal-dependent phosphohydrolase, 7TM intracellular region; SMART: Metal-dependent phosphohydrolase, HD region; SPTR: 7TM receptor with intracellular HD hydrolase; TIGRFAM: HDIG; IMG reference gene:2504824154; PFAM: 7TM-HD extracellular; HD domain; 7TM receptor with intracellular HD hydrolase; TIGRFAM: uncharacterized domain HDIG YP_004441398.1 InterPro IPR013431; KEGG: fjo:Fjoh_0804 hypothetical protein; SPTR: Delta-60 repeat protein; TIGRFAM: Delta-60 repeat; IMG reference gene:2504824155; TIGRFAM: delta-60 repeat domain YP_004441399.1 SPTR: uncharacterized protein; IMG reference gene:2504824156 YP_004441400.1 InterPro IPR005902; KEGG: pgi:PG2040 histone-like family DNA-binding protein; SPTR: DNA-binding protein; TIGRFAM: DNA-binding protein, HU-related; IMG reference gene:2504824157; TIGRFAM: DNA-binding protein, histone-like YP_004441401.1 InterPro IPR002502:IPR006619; KEGG: pgn:PGN_1985 probable N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: Peptidoglycan recognition protein, metazoa/bacteria; N-acetylmuramoyl-L-alanine amidase, family 2; SPTR: N-acetylmuramoyl-L-alanine amidase; IMG reference gene:2504824158; PFAM: N-acetylmuramoyl-L-alanine amidase YP_004441402.1 KEGG: pgn:PGN_1984 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824159 YP_004441403.1 SPTR: lipoprotein; IMG reference gene:2504824160 YP_004441404.1 KEGG: pdi:BDI_2865 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824161 YP_004441405.1 KEGG: pgi:PG2136 hypothetical protein; SPTR: lipoprotein; IMG reference gene:2504824162 YP_004441406.1 KEGG: pgn:PGN_0184 minor component FimD; SPTR: uncharacterized protein; IMG reference gene:2504824163 YP_004441407.1 KEGG: pgn:PGN_0289 hypothetical protein; SPTR: lipoprotein; IMG reference gene:2504824164 YP_004441408.1 InterPro IPR014941; KEGG: pgn:PGN_0288 hypothetical protein; PFAM: Protein of unknown function DUF1812; SPTR: lipoprotein; IMG reference gene:2504824165; PFAM: Protein of unknown function (DUF1812) YP_004441409.1 KEGG: pgn:PGN_0287 Mfa1 fimbrilin; SPTR: Cell surface family protein; IMG reference gene:2504824166 YP_004441410.1 InterPro IPR001440:IPR019734; KEGG: bfs:BF2183 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide repeat protein; IMG reference gene:2504824167; PFAM: Tetratricopeptide repeat; OmpA family YP_004441411.1 KEGG: pgn:PGN_0178 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824168; PFAM: Protein of unknown function (DUF3575) YP_004441412.1 COGs: COG4886 Leucine-rich repeat (LRR) protein; KEGG: tde:TDE0593 internalin-related protein; SPTR: Leucine rich repeat protein; IMG reference gene:2504824169; TIGRFAM: Chlamydial polymorphic outer membrane protein repeat YP_004441413.1 COGs: COG4826 Serine protease inhibitor; InterPro IPR000215; KEGG: cyn:Cyan7425_1826 proteinase inhibitor I4 serpin; PFAM: Protease inhibitor I4, serpin; SMART: Protease inhibitor I4, serpin; SPTR: Serine proteinase inhibitor; IMG reference gene:2504824170; PFAM: Serpin (serine protease inhibitor) YP_004441414.1 SPTR: lipoprotein; IMG reference gene:2504824171 YP_004441415.1 COGs: COG0162 Tyrosyl-tRNA synthetase; HAMAP: Tyrosyl-tRNA synthetase; InterPro IPR002305:IPR002307; KEGG: pgi:PG0263 tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; PRIAM: Tyrosine--tRNA ligase; SPTR: Tyrosine--tRNA ligase; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; IMG reference gene:2504824172; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase YP_004441416.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: pgn:PGN_0361 glycosyl transferase family 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase, group 2 family protein; IMG reference gene:2504824173; PFAM: Glycosyl transferase family 2 YP_004441417.1 COGs: COG0572 Uridine kinase; HAMAP: Uridine kinase; InterPro IPR006083:IPR000764; KEGG: pgn:PGN_1722 uridine kinase; PFAM: Phosphoribulokinase/uridine kinase; PRIAM: Uridine kinase; SPTR: Uridine kinase; TIGRFAM: Uridine kinase; IMG reference gene:2504824174; PFAM: Phosphoribulokinase / Uridine kinase family; TIGRFAM: uridine kinase YP_004441418.1 COGs: COG2860 membrane protein; InterPro IPR005115; KEGG: pdi:BDI_1706 transmembrane protein; PFAM: Uncharacterised protein family UPF0126; SPTR: membrane protein; IMG reference gene:2504824175; PFAM: UPF0126 domain YP_004441419.1 InterPro IPR005490; KEGG: pdi:BDI_0343 hypothetical protein; PFAM: YkuD domain; SPTR: lipoprotein; IMG reference gene:2504824176; PFAM: L,D-transpeptidase catalytic domain YP_004441420.1 COGs: COG0184 Ribosomal protein S15P/S13E; InterPro IPR000589:IPR005290; KEGG: pdi:BDI_2770 30S ribosomal protein S15; PFAM: Ribosomal protein S15; SPTR: Ribosomal protein S15; TIGRFAM: Ribosomal protein S15, bacterial-type; IMG reference gene:2504824177; PFAM: Ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle YP_004441421.1 COGs: COG4487 conserved hypothetical protein; InterPro IPR019219; KEGG: pgn:PGN_0786 hypothetical protein; PFAM: Protein of unknown function DUF2130; SPTR: uncharacterized protein; IMG reference gene:2504824179; PFAM: Uncharacterized protein conserved in bacteria (DUF2130) YP_004441422.1 COGs: COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; InterPro IPR002376; KEGG: bvu:BVU_1052 phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal; PRIAM: Phosphoribosylglycinamide formyltransferase; SPTR: phosphoribosylglycinamide formyltransferase; IMG reference gene:2504824180; PFAM: Formyl transferase; TIGRFAM: phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent YP_004441423.1 COGs: COG0236 Acyl carrier protein; InterPro IPR006163:IPR003231; KEGG: pgn:PGN_1705 acyl carrier protein; PFAM: Phosphopantetheine-binding; SPTR: Acyl carrier protein; TIGRFAM: Acyl carrier protein (ACP); IMG reference gene:2504824181; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein YP_004441424.1 COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030:IPR014031:IPR017568; KEGG: pgn:PGN_1704 beta-ketoacyl-acyl-carrier-protein synthase II; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase II; SPTR: Beta-ketoacyl-acyl-carrier-protein synthase II; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; IMG reference gene:2504824182; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II YP_004441425.1 IMG reference gene:2504824183 YP_004441426.1 COGs: COG0571 dsRNA-specific ribonuclease; HAMAP: Ribonuclease III, bacterial; InterPro IPR011907:IPR000999:IPR001159; KEGG: pgn:PGN_1703 ribonuclease III; PFAM: Ribonuclease III; Double-stranded RNA binding; PRIAM: Ribonuclease III; SMART: Ribonuclease III; Double-stranded RNA binding; SPTR: Ribonuclease III; TIGRFAM: Ribonuclease III, bacterial; IMG reference gene:2504824184; PFAM: RNase3 domain; Double-stranded RNA binding motif; TIGRFAM: ribonuclease III, bacterial YP_004441427.1 SPTR: uncharacterized protein; IMG reference gene:2504824185 YP_004441428.1 COGs: COG2189 adenine specific DNA methylase Mod; InterPro IPR002941; KEGG: pth:PTH_1523 adenine specific DNA methylase Mod; PFAM: DNA methylase N-4/N-6; SPTR: DNA (Cytosine-5-)-methyltransferase domain protein; IMG reference gene:2504824186; PFAM: DNA methylase YP_004441429.1 IMG reference gene:2504824187 YP_004441430.1 COGs: COG1943 Transposase and inactivated derivatives; KEGG: rrs:RoseRS_2540 transposase IS200-family protein; SPTR: uncharacterized protein; IMG reference gene:2504824188; PFAM: Transposase IS200 like YP_004441431.1 KEGG: pth:PTH_1522 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824189; PFAM: Type III restriction enzyme, res subunit YP_004441432.1 COGs: COG0608 Single-stranded DNA-specific exonuclease; InterPro IPR001667:IPR003156:IPR004610; KEGG: pgn:PGN_2003 single-stranded-DNA-specific exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; SPTR: Single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; IMG reference gene:2504824190; PFAM: DHHA1 domain; DHH family; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ YP_004441433.1 COGs: COG0514 Superfamily II DNA helicase; InterPro IPR011545:IPR001650:IPR018329:IPR014001; KEGG: pgi:PG1831 ATP-dependent DNA helicase RecQ; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal; SPTR: ATP-dependent DNA helicase, RecQ family; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, N-terminal; IMG reference gene:2504824191; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family YP_004441434.1 COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; InterPro IPR004424:IPR006204:IPR013750; KEGG: ppn:Palpr_0822 4-diphosphocytidyL-2-C-methyL-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal; PRIAM: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; SPTR: 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; IMG reference gene:2504824192; PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YP_004441435.1 COGs: COG1943 Transposase and inactivated derivatives; InterPro IPR002686; KEGG: rrs:RoseRS_2540 transposase IS200-family protein; PFAM: Transposase IS200-like; SPTR: uncharacterized protein; IMG reference gene:2504824193; PFAM: Transposase IS200 like YP_004441436.1 COGs: COG1197 Transcription-repair coupling factor (superfamily II helicase); InterProIPR003711:IPR011545:IPR001650:IPR005118:IPR 004576:IPR014001; KEGG: pgn:PGN_1714 transcription-repair coupling factor; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Transcription factor CarD; DNA/RNA helicase, C-terminal; Transcription-repair-coupling factor; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Transcription-repair coupling factor; TIGRFAM: Transcription-repair coupling factor; IMG reference gene:2504824194; PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd) YP_004441437.1 COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; InterPro IPR000672:IPR020630:IPR020631; KEGG: pdi:BDI_0219 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; PRIAM: Methenyltetrahydrofolate cyclohydrolase; SPTR: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain protein; IMG reference gene:2504824195; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_004441438.1 KEGG: dfe:Dfer_2821 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824196 YP_004441439.1 KEGG: fsu:Fisuc_1349 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824197; PFAM: Protein of unknown function (DUF3532) YP_004441440.1 COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439:IPR003593; KEGG: pay:PAU_03945 iron-dicitrate transporter ATP-binding subunit; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: iron(III) dicitrate ABC transporter, ATP-binding protein FecE; IMG reference gene:2504824198; PFAM: ABC transporter YP_004441441.1 COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: ddf:DEFDS_0535 iron ABC transporter permease; PFAM: Bacterial transport system permease protein; SPTR: Iron chelate uptake ABC transporter, FeCT family, permease protein; IMG reference gene:2504824199; PFAM: FecCD transport family YP_004441442.1 COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: ddf:DEFDS_0533 iron ABC transporter substrate-binding protein; PFAM: Periplasmic binding protein; SPTR: ABC transporter, substrate-binding protein; IMG reference gene:2504824200; PFAM: Periplasmic binding protein YP_004441443.1 COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: pgn:PGN_1141 amidohydrolase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Hydrolase, carbon-nitrogen family; IMG reference gene:2504824201; PFAM: Carbon-nitrogen hydrolase YP_004441444.1 COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: pgn:PGN_1142 probable acetyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Acyltransferase; IMG reference gene:2504824202; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases YP_004441445.1 KEGG: pdi:BDI_2003 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824203 YP_004441446.1 COGs: COG2985 permease; InterPro IPR006512:IPR006037; KEGG: pgi:PG1411 hypothetical protein; PFAM: YidE/YbjL duplication; Regulator of K+ conductance, C-terminal; SPTR: TrkA C-terminal domain protein; TIGRFAM: YidE/YbjL duplication; IMG reference gene:2504824204; PFAM: Predicted Permease Membrane Region; TrkA-C domain; TIGRFAM: AspT/YidE/YbjL antiporter duplication domain YP_004441447.1 COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151:IPR004447; KEGG: pgi:PG1060 carboxyl-terminal protease; PFAM: Peptidase S41; PDZ/DHR/GLGF; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: Peptidase, S41 family; TIGRFAM: Peptidase S41A, C-terminal protease; IMG reference gene:2504824205; PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc) YP_004441448.1 COGs: COG0550 Topoisomerase IA; InterProIPR006171:IPR013497:IPR006154:IPR003601:IPR 003602; KEGG: pgn:PGN_0221 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim domain; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; SPTR: DNA topoisomerase; IMG reference gene:2504824206; PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase III, bacteria and conjugative plasmid YP_004441449.1 SPTR: Peptide chain release factor 2; manually curated; IMG reference gene:2504824207; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2 YP_004441450.1 COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873; KEGG: pgn:PGN_1245 long-chain-fatty-acid-CoA ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: AMP-binding enzyme; IMG reference gene:2504824208; PFAM: AMP-binding enzyme YP_004441451.1 InterPro IPR000835; KEGG: pgn:PGN_0015 probable transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; IMG reference gene:2504824209; PFAM: MarR family YP_004441452.1 COGs: COG1983 stress-responsive transcriptional regulator protein; InterPro IPR007168; KEGG: bth:BT_1609 hypothetical protein; PFAM: PspC; SPTR: PspC domain protein; IMG reference gene:2504824210; PFAM: PspC domain YP_004441453.1 COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: pgn:PGN_0235 DNA-binding protein HU; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; SPTR: DNA-binding protein HU; IMG reference gene:2504824211; PFAM: Bacterial DNA-binding protein YP_004441454.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: pgi:PG1117 MATE efflux family protein; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; IMG reference gene:2504824212; PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_004441455.1 COGs: COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); HAMAP: DNA ligase; InterProIPR013839:IPR004150:IPR004149:IPR001357:IPR 001679:IPR013840; KEGG: pgn:PGN_1388 DNA ligase; PFAM: NAD-dependent DNA ligase, adenylation; NAD-dependent DNA ligase, OB-fold; Zinc-finger, NAD-dependent DNA ligase C4-type; BRCT; PRIAM: DNA ligase (NAD(+)); SMART: NAD-dependent DNA ligase, N-terminal; BRCT; SPTR: DNA ligase (NAD+); TIGRFAM: NAD-dependent DNA ligase; IMG reference gene:2504824213; PFAM: NAD-dependent DNA ligase OB-fold domain; NAD-dependent DNA ligase adenylation domain; BRCA1 C Terminus (BRCT) domain; NAD-dependent DNA ligase C4 zinc finger domain; TIGRFAM: DNA ligase, NAD-dependent YP_004441456.1 COGs: COG0353 Recombinational DNA repair protein (RecF pathway); HAMAP: Recombination protein recR; InterPro IPR015967:IPR000093:IPR006154; KEGG: pgn:PGN_1390 recombination protein RecR; SMART: Toprim domain, subgroup; SPTR: Recombination protein RecR; TIGRFAM: RecR protein; IMG reference gene:2504824214; PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR YP_004441457.1 COGs: COG3033 Tryptophanase; InterPro IPR001597; KEGG: pgn:PGN_0880 tryptophanase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase; PRIAM: Tryptophanase; SPTR: Beta-eliminating lyase; IMG reference gene:2504824215; PFAM: Beta-eliminating lyase YP_004441458.1 COGs: COG0148 Enolase; HAMAP: Enolase; InterPro IPR000941:IPR020811:IPR020810; KEGG: pdi:BDI_2351 phosphopyruvate hydratase; PFAM: Enolase, C-terminal; Enolase, N-terminal; PRIAM: Phosphopyruvate hydratase; SPTR: Phosphopyruvate hydratase; TIGRFAM: Enolase; IMG reference gene:2504824216; PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase YP_004441459.1 SPTR: uncharacterized protein; IMG reference gene:2504824217 YP_004441460.1 SPTR: Conserved domain protein; IMG reference gene:2504824218 YP_004441461.1 IMG reference gene:2504824219 YP_004441462.1 IMG reference gene:2504824220 YP_004441463.1 COGs: COG0203 Ribosomal protein L17; HAMAP: 50S ribosomal protein L17; InterPro IPR000456; KEGG: bth:BT_2700 50S ribosomal protein L17; PFAM: Ribosomal protein L17; SPTR: Ribosomal protein L17; TIGRFAM: Ribosomal protein L17; IMG reference gene:2504824221; PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17 YP_004441464.1 COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit; HAMAP: DNA-directed RNA polymerase, alpha subunit; InterProIPR011773:IPR011261:IPR011262:IPR011260:IPR 011263; KEGG: pdi:BDI_2354 DNA-directed RNA polymerase subunit alpha; PFAM: DNA-directed RNA polymerase, insert; DNA-directed RNA polymerase, dimerisation; RNA polymerase, alpha subunit, C-terminal; SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; SPTR: DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; IMG reference gene:2504824222; PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type YP_004441465.1 COGs: COG0522 Ribosomal protein S4 and related protein; InterPro IPR001912:IPR002942:IPR005709; KEGG: pgn:PGN_1842 30S ribosomal protein S4; PFAM: Ribosomal protein S4; RNA-binding S4; SMART: RNA-binding S4; SPTR: Ribosomal protein S4; TIGRFAM: Ribosomal protein S4, bacterial-type; IMG reference gene:2504824223; PFAM: Ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type YP_004441466.1 COGs: COG0100 Ribosomal protein S11; InterPro IPR001971:IPR019981; KEGG: bvu:BVU_0782 30S ribosomal protein S11; PFAM: Ribosomal protein S11; SPTR: 30S ribosomal protein S11; TIGRFAM: Ribosomal protein S11, bacterial-type; IMG reference gene:2504824224; PFAM: Ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11 YP_004441467.1 COGs: COG0099 Ribosomal protein S13; InterPro IPR001892:IPR019980; KEGG: pgn:PGN_1844 30S ribosomal protein S13; PFAM: Ribosomal protein S13; SPTR: 30S ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type; IMG reference gene:2504824225; PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13 YP_004441468.1 InterPro IPR000473; KEGG: ran:Riean_0883 LSU ribosomal protein l36p; PFAM: Ribosomal protein L36; SPTR: Ribosomal protein L36; TIGRFAM: Ribosomal protein L36; IMG reference gene:2504824226; PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type YP_004441469.1 COGs: COG0361 Translation initiation factor 1 (IF-1); InterPro IPR004368:IPR006196; KEGG: pgn:PGN_1846 translation initiation factor IF-1; PFAM: S1, IF1 type; SPTR: Translation initiation factor IF-1; TIGRFAM: Translation initiation factor IF-1; IMG reference gene:2504824227; PFAM: Translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1 YP_004441470.1 COGs: COG0024 Methionine aminopeptidase; InterPro IPR000994:IPR002467; KEGG: pdi:BDI_2359 methionine aminopeptidase, type I; PFAM: Peptidase M24, structural domain; PRIAM: Methionyl aminopeptidase; SPTR: Methionine aminopeptidase, type I; TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; IMG reference gene:2504824228; PFAM: Metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I YP_004441471.1 COGs: COG0201 Preprotein translocase subunit SecY; InterPro IPR002208; KEGG: pgn:PGN_1848 preprotein translocase subunit SecY; PFAM: SecY protein; SPTR: Preprotein translocase, SecY subunit; TIGRFAM: SecY protein; IMG reference gene:2504824229; PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit YP_004441472.1 COGs: COG0200 Ribosomal protein L15; InterPro IPR001196:IPR005749; KEGG: pgn:PGN_1849 50S ribosomal protein L15; PFAM: Ribosomal protein L15; SPTR: Ribosomal protein L15; TIGRFAM: Ribosomal protein L15, bacterial-type; IMG reference gene:2504824230; PFAM: Ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle YP_004441473.1 COGs: COG1841 Ribosomal protein L30/L7E; InterPro IPR000517:IPR005996; KEGG: pgn:PGN_1850 50S ribosomal protein L30; PFAM: Ribosomal protein L30p/L7e, conserved region; SPTR: Ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; IMG reference gene:2504824231; PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle YP_004441474.1 COGs: COG0098 Ribosomal protein S5; InterPro IPR005712:IPR013810:IPR005324; KEGG: pgn:PGN_1851 30S ribosomal protein S5; PFAM: Ribosomal protein S5, N-terminal; Ribosomal protein S5, C-terminal; SPTR: Ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type; IMG reference gene:2504824232; PFAM: Ribosomal protein S5, N-terminal domain; Ribosomal protein S5, C-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type YP_004441475.1 COGs: COG0256 Ribosomal protein L18; InterPro IPR005484:IPR004389; KEGG: pgn:PGN_1852 50S ribosomal protein L18; PFAM: Ribosomal protein L18/L5; SPTR: Ribosomal protein L18; TIGRFAM: Ribosomal protein L18, bacterial; IMG reference gene:2504824233; PFAM: Ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type YP_004441476.1 COGs: COG0097 Ribosomal protein L6P/L9E; InterPro IPR020040:IPR019906; KEGG: pgn:PGN_1853 50S ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain; SPTR: Ribosomal protein L6; TIGRFAM: Ribosomal protein L6, bacterial-type; IMG reference gene:2504824234; PFAM: Ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type YP_004441477.1 COGs: COG0096 Ribosomal protein S8; InterPro IPR000630; KEGG: pgn:PGN_1854 30S ribosomal protein S8; PFAM: Ribosomal protein S8; SPTR: Ribosomal protein S8; IMG reference gene:2504824235; PFAM: Ribosomal protein S8 YP_004441478.1 COGs: COG0199 Ribosomal protein S14; HAMAP: 30S ribosomal protein S14; InterPro IPR001209; KEGG: gfo:GFO_2826 30S ribosomal protein S14; PFAM: Ribosomal protein S14; SPTR: Ribosomal protein S14p/S29e; IMG reference gene:2504824236; PFAM: Ribosomal protein S14p/S29e YP_004441479.1 COGs: COG0094 Ribosomal protein L5; InterPro IPR002132; KEGG: pgn:PGN_1856 50S ribosomal protein L5; PFAM: Ribosomal protein L5; SPTR: Ribosomal protein L5; IMG reference gene:2504824237; PFAM: ribosomal L5P family C-terminus; Ribosomal protein L5 YP_004441480.1 COGs: COG0198 Ribosomal protein L24; InterPro IPR003256:IPR005824; KEGG: pgn:PGN_1857 50S ribosomal protein L24; PFAM: KOW; SMART: KOW; SPTR: Ribosomal protein L24; TIGRFAM: Ribosomal protein L24; IMG reference gene:2504824238; PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle YP_004441481.1 COGs: COG0093 Ribosomal protein L14; InterPro IPR000218:IPR005745; KEGG: aps:CFPG_084 50S ribosomal protein L14; PFAM: Ribosomal protein L14b/L23e; SPTR: Ribosomal protein L14; TIGRFAM: Ribosomal protein L14, bacterial-type; IMG reference gene:2504824239; PFAM: Ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle YP_004441482.1 COGs: COG0186 Ribosomal protein S17; InterPro IPR000266:IPR019984; KEGG: pgn:PGN_1859 30S ribosomal protein S17; PFAM: Ribosomal protein S17; SPTR: 30S ribosomal protein S17; TIGRFAM: Ribosomal protein S17, bacterial-type; IMG reference gene:2504824240; PFAM: Ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17 YP_004441483.1 InterPro IPR001854; KEGG: pdi:BDI_2372 50S ribosomal protein L29; PFAM: Ribosomal protein L29; SPTR: Ribosomal protein L29; TIGRFAM: Ribosomal protein L29; IMG reference gene:2504824241; PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29 YP_004441484.1 COGs: COG0197 Ribosomal protein L16/L10E; HAMAP: Ribosomal protein L16; InterPro IPR000114:IPR016180; KEGG: pdi:BDI_2373 50S ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; SPTR: Ribosomal protein L16; TIGRFAM: Ribosomal protein L16; IMG reference gene:2504824242; PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle YP_004441485.1 COGs: COG0092 Ribosomal protein S3; InterPro IPR008282:IPR004044:IPR001351:IPR005704; KEGG: pgn:PGN_1862 30S ribosomal protein S3; PFAM: Ribosomal protein S3, C-terminal; Ribosomal protein S3, N-terminal; K Homology, type 2; SPTR: Ribosomal protein S3; TIGRFAM: Ribosomal protein S3, bacterial; IMG reference gene:2504824243; PFAM: KH domain; Ribosomal protein S3, C-terminal domain; Ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type YP_004441486.1 COGs: COG0091 Ribosomal protein L22; InterPro IPR001063:IPR005727; KEGG: bfr:BF4176 50S ribosomal protein L22; PFAM: Ribosomal protein L22/L17; SPTR: Ribosomal protein L22; TIGRFAM: Ribosomal protein L22, bacterial-type; IMG reference gene:2504824244; PFAM: Ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type YP_004441487.1 COGs: COG0185 Ribosomal protein S19; InterPro IPR005732:IPR002222; KEGG: pdi:BDI_2376 30S ribosomal protein S19; PFAM: Ribosomal protein S19/S15; SPTR: Ribosomal protein S19; TIGRFAM: Ribosomal protein S19, bacterial-type; IMG reference gene:2504824245; PFAM: Ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle YP_004441488.1 COGs: COG0090 Ribosomal protein L2; InterPro IPR002171:IPR005880; KEGG: pdi:BDI_2377 50S ribosomal protein L2; PFAM: Ribosomal protein L2; SPTR: Ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type; IMG reference gene:2504824246; PFAM: Ribosomal Proteins L2, RNA binding domain; Ribosomal Proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar YP_004441489.1 COGs: COG0089 Ribosomal protein L23; InterPro IPR013025; KEGG: pgn:PGN_1866 50S ribosomal protein L23; PFAM: Ribosomal protein L25/L23; SPTR: Ribosomal protein L23; IMG reference gene:2504824247; PFAM: Ribosomal protein L23 YP_004441490.1 COGs: COG0088 Ribosomal protein L4; InterPro IPR002136; KEGG: pgn:PGN_1867 50S ribosomal protein L4; PFAM: Ribosomal protein L4/L1e; SPTR: 50S ribosomal protein L4; IMG reference gene:2504824248; PFAM: Ribosomal protein L4/L1 family; TIGRFAM: 50S ribosomal protein L4, bacterial/organelle YP_004441491.1 COGs: COG0087 Ribosomal protein L3; InterPro IPR000597:IPR019927; KEGG: pgn:PGN_1868 50S ribosomal protein L3; PFAM: Ribosomal protein L3; SPTR: 50S ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type; IMG reference gene:2504824249; PFAM: Ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial YP_004441492.1 COGs: COG0051 Ribosomal protein S10; HAMAP: 30S ribosomal protein S10; InterPro IPR001848:IPR005731; KEGG: SSU ribosomal protein S10P; PFAM: Ribosomal protein S10; SPTR: Ribosomal protein S10; TIGRFAM: Ribosomal protein S10, bacterial; IMG reference gene:2504824250; PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle YP_004441493.1 COGs: COG0480 Translation elongation factors (GTPase); InterProIPR000795:IPR004161:IPR005517:IPR000640:IPR 004540:IPR005225; KEGG: pdi:BDI_2382 elongation factor G; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; SPTR: Translation elongation factor G; TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; IMG reference gene:2504824251; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain YP_004441494.1 COGs: COG0049 Ribosomal protein S7; InterPro IPR000235:IPR005717; KEGG: pgn:PGN_1871 30S ribosomal protein S7; PFAM: Ribosomal protein S7; SPTR: Ribosomal protein S7; TIGRFAM: Ribosomal protein S7, bacterial-type; IMG reference gene:2504824252; PFAM: Ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle YP_004441495.1 SPTR: uncharacterized protein; IMG reference gene:2504824253 YP_004441496.1 COGs: COG0048 Ribosomal protein S12; InterPro IPR006032:IPR005679; KEGG: pdi:BDI_2384 30S ribosomal protein S12; PFAM: Ribosomal protein S12/S23; SPTR: Ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacterial-type; IMG reference gene:2504824254; PFAM: Ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle YP_004441497.1 COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834:IPR006402; KEGG: pgi:PG0725 HAD superfamily hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: HAD hydrolase, family IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; IMG reference gene:2504824255; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED YP_004441498.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR011659:IPR001375; KEGG: pgn:PGN_0756 prolyl oligopeptidase; SPTR: Peptidase, S9A/B/C family, catalytic domain protein; IMG reference gene:2504824256; PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region; WD40-like Beta Propeller Repeat YP_004441499.1 InterPro IPR001611; KEGG: pgi:PG0350 internalin-related protein; SPTR: Leucine rich repeat protein; IMG reference gene:2504824257; PFAM: Leucine Rich Repeat YP_004441500.1 KEGG: pgn:PGN_0852 immunoreactive 47 kDa antigen; SPTR: uncharacterized protein; IMG reference gene:2504824258 YP_004441501.1 KEGG: llo:LLO_3002 transmembrane protein (fibronectin III domain and GP5 C-terminal repeat); SPTR: uncharacterized protein; IMG reference gene:2504824259 YP_004441502.1 SPTR: uncharacterized protein; IMG reference gene:2504824260 YP_004441503.1 InterPro IPR001611; KEGG: tde:TDE0593 internalin-related protein; SPTR: Leucine rich repeat protein; IMG reference gene:2504824261 YP_004441504.1 KEGG: pdi:BDI_2065 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824262 YP_004441505.1 InterPro IPR017690; KEGG: pgi:PG1823 hypothetical protein; SPTR: Outer membrane insertion signal domain protein; TIGRFAM: Outer membrane insertion C-terminal signal, omp85; IMG reference gene:2504824263 YP_004441506.1 InterPro IPR017690; KEGG: pgi:PG1823 hypothetical protein; SPTR: Outer membrane insertion signal domain protein; TIGRFAM: Outer membrane insertion C-terminal signal, omp85; IMG reference gene:2504824264 YP_004441507.1 KEGG: pdi:BDI_2766 lysyl endopeptidase precursor; SPTR: uncharacterized protein; IMG reference gene:2504824265 YP_004441508.1 SPTR: uncharacterized protein; IMG reference gene:2504824266 YP_004441509.1 COGs: COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I N-terminal domain; InterPro IPR004646; KEGG: cth:Cthe_3090 fumarate hydratase; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; PRIAM: Fumarate hydratase; SPTR: Hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type; TIGRFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; IMG reference gene:2504824267; PFAM: Fumarate hydratase (Fumerase); TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region YP_004441510.1 COGs: COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I C-terminal domain; InterPro IPR004647; KEGG: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate beta region; PRIAM: Fumarate hydratase; SPTR: Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type; TIGRFAM: Fe-S type hydro-lyases tartrate/fumarate beta region; IMG reference gene:2504824268; PFAM: Fumarase C-terminus; TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region YP_004441511.1 COGs: COG0342 Preprotein translocase subunit SecD; InterPro IPR003335:IPR005791:IPR005665; KEGG: pgn:PGN_1702 bifunctional preprotein translocase subunit SecD/SecF; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: Export membrane protein SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein; SecF protein; IMG reference gene:2504824270; PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF YP_004441512.1 COGs: COG0628 permease; InterPro IPR002549; KEGG: bfr:BF1591 hypothetical protein; PFAM: Uncharacterised protein family UPF0118; SPTR: membrane protein; IMG reference gene:2504824271; PFAM: Domain of unknown function DUF20 YP_004441513.1 COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR003959:IPR012763:IPR003593; KEGG: pgn:PGN_0894 DNA polymerase III, gamma and tau subunits; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: DNA polymerase III, subunit gamma and tau; TIGRFAM: DNA polymerase III, subunit gamma/ tau; IMG reference gene:2504824272; PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: DNA polymerase III, subunit gamma and tau YP_004441514.1 COGs: COG0284 Orotidine-5'-phosphate decarboxylase; HAMAP: Orotidine 5'-phosphate decarboxylase; InterPro IPR001754:IPR011995; KEGG: pgn:PGN_2021 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase, core; PRIAM: Orotidine-5'-phosphate decarboxylase; SPTR: Orotidine 5'-phosphate decarboxylase; TIGRFAM: Orotidine 5'-phosphate decarboxylase, subfamily 2, core; IMG reference gene:2504824273; PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 2 YP_004441515.1 COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); HAMAP: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; InterPro IPR007691:IPR020573:IPR001451; KEGG: pgn:PGN_2020 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; Bacterial transferase hexapeptide repeat; PRIAM:Acyl-[acyl-carrier-protein]--UDP-N-acetylgluc osamineO-acyltransferase; SPTR: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; IMG reference gene:2504824274; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_004441516.1 COGs: COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; HAMAP: (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; InterPro IPR004463:IPR013114:IPR010084; KEGG: pgn:PGN_2019 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; SPTR: Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase FabZ; TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; UDP-3-O-acyl N-acetylglucosamine deacetylase; IMG reference gene:2504824275; PFAM: FabA-like domain; UDP-3-O-acyl N-acetylglycosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ YP_004441517.1 COGs: COG1043 Acyl-(acyl carrier protein); InterPro IPR001451:IPR010137; KEGG: pgn:PGN_2018 UDP-N-acetylglucosamine acyltransferase; PFAM: Bacterial transferase hexapeptide repeat; PRIAM:Acyl-[acyl-carrier-protein]--UDP-N-acetylgluc osamineO-acyltransferase; SPTR:Acyl-[acyl-carrier-protein]-UDP-N-acetylglucos amineO-acyltransferase; TIGRFAM:Acyl-[acyl-carrier-protein]--UDP-N-acetylgl ucosamineO-acyltransferase; IMG reference gene:2504824276; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase YP_004441518.1 COGs: COG0063 sugar kinase; InterPro IPR004443:IPR000631; KEGG: pdi:BDI_1900 sugar kinase; PFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal; SPTR: YjeF domain protein; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; IMG reference gene:2504824277; PFAM: Carbohydrate kinase; YjeF-related protein N-terminus; TIGRFAM: yjeF N-terminal region; yjeF C-terminal region, hydroxyethylthiazole kinase-related YP_004441519.1 SPTR: uncharacterized protein; IMG reference gene:2504824278 YP_004441520.1 SPTR: uncharacterized protein; IMG reference gene:2504824279 YP_004441521.1 COGs: COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); HAMAP: Polyribonucleotide nucleotidyltransferase; InterProIPR012162:IPR001247:IPR015847:IPR015848:IPR 018111:IPR003029:IPR004087; KEGG: pgi:PG0766 polynucleotide phosphorylase/polyadenylase; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; Ribosomal protein S1, RNA binding domain; PRIAM: Polyribonucleotide nucleotidyltransferase; SPTR: Polyribonucleotide nucleotidyltransferase; TIGRFAM: Polyribonucleotide nucleotidyltransferase; IMG reference gene:2504824280; PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease family, domain 1; Polyribonucleotide nucleotidyltransferase, RNA binding domain; 3' exoribonuclease family, domain 2; TIGRFAM: polyribonucleotide nucleotidyltransferase YP_004441522.1 COGs: COG0738 Fucose permease; InterPro IPR011701; KEGG: major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Transporter, major facilitator family protein; IMG reference gene:2504824281; PFAM: Major Facilitator Superfamily YP_004441523.1 SPTR: uncharacterized protein; IMG reference gene:2504824282; PFAM: Membrane-bound lysozyme-inhibitor of c-type lysozyme YP_004441524.1 SPTR: uncharacterized protein; IMG reference gene:2504824283 YP_004441525.1 COGs: COG2096 conserved hypothetical protein; InterPro IPR002779:IPR017858; KEGG: pgn:PGN_1221 probable ATP:corrinoid adenosyltransferase; PFAM: adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type; PRIAM: Cob(I)yrinic acid a,c-diamide adenosyltransferase; SPTR: ATP:cob(I)alamin adenosyltransferase; TIGRFAM: adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal; IMG reference gene:2504824284; PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase YP_004441526.1 KEGG: pgn:PGN_0795 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824285 YP_004441527.1 KEGG: cts:Ctha_1540 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824286 YP_004441528.1 KEGG: pgi:PG0616 thioredoxin, SPTR: uncharacterized protein; IMG reference gene:2504824287 YP_004441529.1 KEGG: llo:LLO_3002 transmembrane protein (fibronectin III domain and GP5 C-terminal repeat); SPTR: uncharacterized protein; IMG reference gene:2504824288 YP_004441530.1 SPTR: lipoprotein; IMG reference gene:2504824289 YP_004441531.1 COGs: COG2908 conserved hypothetical protein; InterPro IPR004843; KEGG: pgi:PG1778 hypothetical protein; PFAM: Metallophosphoesterase; SPTR: Ser/Thr phosphatase family protein; IMG reference gene:2504824290 YP_004441532.1 COGs: COG2151 metal-sulfur cluster biosynthetic protein; InterPro IPR002744; KEGG: pgi:PG1777 hypothetical protein; PFAM: Protein of unknown function DUF59; SPTR: FeS assembly SUF system protein; IMG reference gene:2504824291; PFAM: Domain of unknown function DUF59; TIGRFAM: FeS assembly SUF system protein YP_004441533.1 InterPro IPR019500; KEGG: pgn:PGN_0607 hypothetical protein; PFAM: Peptidase S46; SPTR: uncharacterized protein; IMG reference gene:2504824292; PFAM: Peptidase S46 YP_004441534.1 COGs: COG2954 conserved hypothetical protein; InterPro IPR008172; KEGG: pgn:PGN_0608 hypothetical protein; PFAM: adenylate cyclase; SPTR: adenylate cyclase; IMG reference gene:2504824293; PFAM: CYTH domain YP_004441535.1 InterPro IPR018598; KEGG: pgn:PGN_0609 probable DNA mismatch repair protein; PFAM: Domain of unknown function DUF2027; SPTR: uncharacterized protein; IMG reference gene:2504824294; PFAM: Domain of unknown function (DUF2027) YP_004441536.1 KEGG: tva:TVAG_154640 surface antigen BspA-like; SPTR: uncharacterized protein; IMG reference gene:2504824295 YP_004441537.1 COGs: COG4886 Leucine-rich repeat (LRR) protein; InterPro IPR001611; KEGG: fjo:Fjoh_0602 two component regulator; SPTR: Leucine rich repeat protein; IMG reference gene:2504824296; PFAM: Leucine Rich Repeat YP_004441538.1 KEGG: tde:TDE0593 internalin-related protein; SPTR: Leucine rich repeat protein; IMG reference gene:2504824297 YP_004441539.1 COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544:IPR005786; KEGG: pgn:PGN_1080 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV; PRIAM: Branched-chain-amino-acid transaminase; SPTR: Branched-chain-amino-acid transaminase; TIGRFAM: Branched-chain amino acid aminotransferase II; IMG reference gene:2504824298; PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group II YP_004441540.1 COGs: COG3344 Retron-type reverse transcriptase; InterPro IPR000477:IPR013597; KEGG: smb:smi_1764 reverse transcriptase/maturase, group II introns; PFAM: RNA-directed DNA polymerase (reverse transcriptase); Group II intron, maturase-specific; SPTR: reverse transcriptase/maturase; IMG reference gene:2504824299; PFAM: Group II intron, maturase-specific domain; Reverse transcriptase (RNA-dependent DNA polymerase) YP_004441541.1 IMG reference gene:2504824300 YP_004441542.1 IMG reference gene:2504824301 YP_004441543.1 KEGG: amt:Amet_0963 S-layer domain-containing protein; SPTR: uncharacterized protein; IMG reference gene:2504824302 YP_004441544.1 KEGG: pgn:PGN_1372 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824303 YP_004441545.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792; KEGG: pgn:PGN_1373 probable transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; SPTR: Transcriptional regulator, LuxR family; IMG reference gene:2504824304; PFAM: Bacterial regulatory proteins, luxR family YP_004441546.1 COGs: COG0622 phosphoesterase; KEGG: phe:Phep_2971 metallophosphoesterase; SPTR: Phosphodiesterase family protein; IMG reference gene:2504824305; TIGRFAM: phosphoesterase, MJ0936 family YP_004441547.1 COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545:IPR001650:IPR014001; KEGG: pgn:PGN_0150 ATP-dependent RNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent RNA helicase RhlE; IMG reference gene:2504824306; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase YP_004441548.1 COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterPro IPR020829:IPR020828:IPR006424; KEGG: pgn:PGN_0173 glyceraldehyde 3-phosphate dehydrogenase type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; SPTR: Glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; IMG reference gene:2504824307; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I YP_004441549.1 COGs: COG4413 Urea transporter; InterPro IPR004937; KEGG: UreA transporter; PFAM: Urea transporter; SPTR: Urea transporter; IMG reference gene:2504824308; PFAM: Urea transporter YP_004441550.1 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: pgi:PG1252 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: Efflux ABC transporter, permease protein; IMG reference gene:2504824309; PFAM: Predicted permease YP_004441551.1 COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439:IPR003593; KEGG: pgn:PGN_1363 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; IMG reference gene:2504824310; PFAM: ABC transporter YP_004441552.1 COGs: COG4623 soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein; InterPro IPR008258; KEGG: pgn:PGN_1362 probable exported transglycosylase protein; PFAM: Lytic transglycosylase-like, catalytic; SPTR: Transglycosylase SLT domain protein; IMG reference gene:2504824311; PFAM: Transglycosylase SLT domain YP_004441553.1 InterPro IPR013210:IPR001611; KEGG: fjo:Fjoh_0602 two component regulator; PFAM: Leucine-rich repeat, N-terminal; Leucine-rich repeat; SPTR: Leucine rich repeat protein; IMG reference gene:2504824312; PFAM: Leucine rich repeat N-terminal domain; Leucine Rich Repeat YP_004441554.1 COGs: COG1089 GDP-D-mannose dehydratase; InterPro IPR001509:IPR006368; KEGG: bvu:BVU_2652 GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: GDP-mannose 4,6-dehydratase; SPTR: GDP-mannose 4,6-dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; IMG reference gene:2504824313; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: GDP-mannose 4,6-dehydratase YP_004441555.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: pgn:PGN_1079 GDP-fucose synthetase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: GDP-L-fucose synthase; SPTR: GDP-L-fucose synthetase; IMG reference gene:2504824314; PFAM: NAD dependent epimerase/dehydratase family YP_004441556.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR013973; KEGG: pgn:PGN_1019 response regulator; PFAM: PglZ domain; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: PglZ domain protein; IMG reference gene:2504824315; PFAM: PglZ domain; Response regulator receiver domain YP_004441557.1 COGs: COG0802 ATPase or kinase; InterPro IPR003442; KEGG: pgi:PG0927 hypothetical protein; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria; SPTR: Hydrolase, P-loop family; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; IMG reference gene:2504824316; PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: ATPase, YjeE family YP_004441558.1 KEGG: tva:TVAG_154640 surface antigen BspA-like; SPTR: uncharacterized protein; IMG reference gene:2504824317 YP_004441559.1 IMG reference gene:2504824318 YP_004441560.1 SPTR: uncharacterized protein; IMG reference gene:2504824319; PFAM: Protein of unknown function (DUF2874) YP_004441561.1 InterPro IPR000531; KEGG: pgn:PGN_0400 hypothetical protein; PFAM: TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; IMG reference gene:2504824320 YP_004441562.1 InterPro IPR007593; KEGG: interferon-induced transmembrane protein; PFAM: Interferon-induced transmembrane protein; SPTR: Interferon-induced transmembrane protein; IMG reference gene:2504824321; PFAM: Interferon-induced transmembrane protein YP_004441563.1 InterPro IPR007593; KEGG: interferon-induced transmembrane protein; PFAM: Interferon-induced transmembrane protein; SPTR: Interferon-induced transmembrane protein; IMG reference gene:2504824322; PFAM: Interferon-induced transmembrane protein YP_004441564.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: pdi:BDI_3840 TonB-dependent outer membrane protein; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; IMG reference gene:2504824323; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_004441565.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: pgn:PGN_0723 succinate-semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; PRIAM: acetaldehyde dehydrogenase (acetylating); SPTR: Aldehyde-alcohol dehydrogenase family protein; IMG reference gene:2504824324; PFAM: Aldehyde dehydrogenase family YP_004441566.1 COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR001670; KEGG: pgn:PGN_0724 NAD-dependent 4-hydroxybutyrate dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type; PRIAM: 4-hydroxybutyrate dehydrogenase; SPTR: Alcohol dehydrogenase, iron-dependent; IMG reference gene:2504824325; PFAM: Iron-containing alcohol dehydrogenase YP_004441567.1 COGs: COG0427 acetyl-CoA hydrolase; InterPro IPR003702; KEGG: pgi:PG0690 4-hydroxybutyrate CoA-transferase; PFAM: acetyl-CoA hydrolase/transferase; SPTR: 4-hydroxybutyrate coenzyme A transferase; IMG reference gene:2504824326; PFAM: acetyl-CoA hydrolase/transferase N-terminal domain YP_004441568.1 IMG reference gene:2504824327 YP_004441569.1 InterPro IPR001075; KEGG: pgn:PGN_0726 hypothetical protein; PFAM: NIF system FeS cluster assembly, NifU, C-terminal; SPTR: NifU-like protein; IMG reference gene:2504824328; PFAM: NifU-like domain YP_004441570.1 COGs: COG2368 Aromatic ring hydroxylase; InterPro IPR004925; KEGG: pgi:PG0692 4-hydroxybutyryl-CoA dehydratase; PFAM: 4-hydroxyphenylacetate 3-hydroxylase; PRIAM: Vinylacetyl-CoA Delta-isomerase; SPTR: Gamma-aminobutyrate metabolism dehydratase/isomerase; IMG reference gene:2504824329; PFAM: 4-hydroxyphenylacetate 3-hydroxylase N terminal; 4-hydroxyphenylacetate 3-hydroxylase C terminal YP_004441571.1 KEGG: tde:TDE0593 internalin-related protein; SPTR: Leucine rich repeat protein; IMG reference gene:2504824330 YP_004441572.1 COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933; KEGG: bfs:BF3242 exported alpha-L-fucosidase protein; PFAM: Glycoside hydrolase, family 29; SMART: Glycoside hydrolase, family 29; SPTR: Alpha-L-fucosidase; manually curated; IMG reference gene:2504824331; PFAM: Alpha-L-fucosidase YP_004441573.1 COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; HAMAP: Glucose-inhibited division protein A; InterPro IPR004416:IPR002218; KEGG: pdi:BDI_2965 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: Glucose-inhibited division protein A-related; SPTR: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; TIGRFAM: Glucose-inhibited division protein A; IMG reference gene:2504824332; PFAM: Glucose inhibited division protein A; TIGRFAM: glucose-inhibited division protein A YP_004441574.1 COGs: COG0322 Nuclease subunit of the excinuclease complex; HAMAP: UvrABC system protein C; InterPro IPR000305:IPR001162:IPR004791; KEGG: pgn:PGN_1938 excinuclease ABC subunit C; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; SMART: Excinuclease ABC, C subunit, N-terminal; SPTR: Excinuclease ABC, C subunit; TIGRFAM: Excinuclease ABC, C subunit; IMG reference gene:2504824333; PFAM: UvrC Helix-hairpin-helix N-terminal; GIY-YIG catalytic domain; TIGRFAM: excinuclease ABC, C subunit YP_004441575.1 COGs: COG1490 D-Tyr-tRNAtyr deacylase; HAMAP: D-tyrosyl-tRNA(Tyr) deacylase; InterPro IPR003732; KEGG: bth:BT_3265 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; SPTR: D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; IMG reference gene:2504824334; PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_004441576.1 InterPro IPR004518; KEGG: pdi:BDI_2969 hypothetical protein; PFAM: NTP pyrophosphohydrolase MazG, catalytic core; SPTR: MazG nucleotide pyrophosphohydrolase domain protein; IMG reference gene:2504824335; PFAM: MazG nucleotide pyrophosphohydrolase domain YP_004441577.1 COGs: COG0274 Deoxyribose-phosphate aldolase; InterPro IPR002915:IPR011343; KEGG: pdi:BDI_2970 deoxyribose-phosphate aldolase; PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PRIAM: Deoxyribose-phosphate aldolase; SPTR: Deoxyribose-phosphate aldolase; TIGRFAM: Deoxyribose-phosphate aldolase; IMG reference gene:2504824336; PFAM: DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase YP_004441578.1 COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: mta:Moth_0752 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: DegT/DnrJ/EryC1/StrS aminotransferase family protein; IMG reference gene:2504824337; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family YP_004441579.1 COGs: COG4108 Peptide chain release factor RF-3; InterPro IPR000795:IPR004548:IPR005225; KEGG: pgn:PGN_0313 peptide chain release factor 3; PFAM: Protein synthesis factor, GTP-binding; SPTR: Peptide chain release factor 3; TIGRFAM: Peptide chain release factor 3; Small GTP-binding protein; IMG reference gene:2504824338; PFAM: Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; peptide chain release factor 3 YP_004441580.1 COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: cts:Ctha_1001 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; IMG reference gene:2504824339; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004441581.1 KEGG: cts:Ctha_1000 hypothetical protein; SPTR: lipoprotein; IMG reference gene:2504824340 YP_004441582.1 KEGG: naz:Aazo_0210 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824341 YP_004441583.1 KEGG: pgi:PG1359 hypothetical protein; SPTR: membrane protein; IMG reference gene:2504824342 YP_004441584.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: pgi:PG1345 glycosyl transferase, group 1 family protein; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyltransferase, group 1 family protein; IMG reference gene:2504824343; PFAM: Glycosyl transferases group 1 YP_004441585.1 COGs: COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog); InterPro IPR002942; KEGG: pdi:BDI_0331 heat shock protein 15; PFAM: RNA-binding S4; SMART: RNA-binding S4; SPTR: S4 domain protein; IMG reference gene:2504824344; PFAM: S4 domain YP_004441586.1 COGs: COG0193 Peptidyl-tRNA hydrolase; HAMAP: Peptidyl-tRNA hydrolase; InterPro IPR001328; KEGG: pdi:BDI_0332 peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase; PRIAM: Aminoacyl-tRNA hydrolase; SPTR: Aminoacyl-tRNA hydrolase; TIGRFAM: Peptidyl-tRNA hydrolase; IMG reference gene:2504824345; PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase YP_004441587.1 COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: pgn:PGN_0754 hypothetical protein; PFAM: NLP/P60; SPTR: Gamma-DL-glutamyl hydrolase family protein; IMG reference gene:2504824346; PFAM: NlpC/P60 family YP_004441588.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595:IPR001808; KEGG: pmz:HMPREF0659_A6020 cyclic nucleotide-binding domain protein; PFAM: Cyclic nucleotide-binding; SMART: HTH transcriptional regulator, Crp; SPTR: uncharacterized protein; IMG reference gene:2504824347 YP_004441589.1 COGs: COG1151 6Fe-6S prismane cluster-containing protein; HAMAP: Hybrid cluster protein; InterPro IPR010048:IPR004137; KEGG: pmz:HMPREF0659_A6866 hydroxylamine reductase; PFAM: Prismane; SPTR: Hydroxylamine reductase; TIGRFAM: Hybrid cluster protein; IMG reference gene:2504824348; PFAM: Prismane/CO dehydrogenase family; TIGRFAM: hydroxylamine reductase YP_004441590.1 SPTR: uncharacterized protein; IMG reference gene:2504824349 YP_004441591.1 IMG reference gene:2504824350 YP_004441592.1 KEGG: ccb:Clocel_3323 cell surface protein; SPTR: uncharacterized protein; IMG reference gene:2504824351 YP_004441593.1 KEGG: tde:TDE0206 surface antigen, SPTR: Leucine rich repeat protein; IMG reference gene:2504824352 YP_004441594.1 COGs: COG0842 ABC-type multidrug transport system permease component; InterPro IPR013525; KEGG: ppn:Palpr_2712 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: ABC-2 type transporter; IMG reference gene:2504824353; PFAM: ABC-2 type transporter YP_004441595.1 COGs: COG0842 ABC-type multidrug transport system permease component; InterPro IPR013525; KEGG: ppn:Palpr_2713 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: ABC-2 type transporter; IMG reference gene:2504824354; PFAM: ABC-2 type transporter YP_004441596.1 COGs: COG0693 intracellular protease/amidase; InterPro IPR002818:IPR006287; KEGG: bvu:BVU_0473 ThiJ family intracellular protease; PFAM: ThiJ/PfpI; SPTR: DJ-1 family protein; TIGRFAM: DJ-1; IMG reference gene:2504824355; PFAM: DJ-1/PfpI family; TIGRFAM: DJ-1 family protein YP_004441597.1 COGs: COG0810 Periplasmic protein TonB links inner and outer membranes; InterPro IPR006260; KEGG: pgn:PGN_0674 hypothetical protein; SPTR: TonB family C-terminal domain protein; TIGRFAM: TonB, C-terminal; IMG reference gene:2504824356; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain YP_004441598.1 COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: pdi:BDI_1547 transport related protein; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Transport energizing protein, ExbD/TolR family; manually curated; IMG reference gene:2504824357; PFAM: Biopolymer transport protein ExbD/TolR YP_004441599.1 COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: pdi:BDI_1546 biopolymer transport protein ExbB; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Transporter, MotA/TolQ/ExbB proton channel family protein; IMG reference gene:2504824358; PFAM: MotA/TolQ/ExbB proton channel family YP_004441600.1 COGs: COG0854 Pyridoxal phosphate biosynthesis protein; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; InterPro IPR004569; KEGG: pdi:BDI_1545 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; PRIAM: Pyridoxine 5'-phosphate synthase; SPTR: Pyridoxine 5'-phosphate synthase; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; IMG reference gene:2504824359; PFAM: Pyridoxal phosphate biosynthesis protein PdxJ; TIGRFAM: pyridoxine 5'-phosphate synthase YP_004441601.1 InterPro IPR010870; KEGG: ppn:Palpr_1763 phosphate-selective porin o and P; PFAM: Phosphate-selective porin O/P; SPTR: Phosphate-selective porin O and P; IMG reference gene:2504824360 YP_004441602.1 IMG reference gene:2504824361 YP_004441603.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: pgi:PG1640 DNA-damage-inducible protein F; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; IMG reference gene:2504824362; PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_004441604.1 COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR005913; KEGG: ava:Ava_3355 3-beta hydroxysteroid dehydrogenase/isomerase; PFAM: dTDP-4-dehydrorhamnose reductase; PRIAM: dTDP-4-dehydrorhamnose reductase; SPTR: dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; IMG reference gene:2504824363; PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase YP_004441605.1 KEGG: pgi:PG0125 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824364 YP_004441606.1 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: pgi:PG0922 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: Efflux ABC transporter, permease protein; IMG reference gene:2504824365; PFAM: Predicted permease YP_004441607.1 COGs: COG0858 Ribosome-binding factor A; InterPro IPR000238; KEGG: bvu:BVU_0874 ribosome-binding factor A; PFAM: Ribosome-binding factor A; SPTR: Ribosome-binding factor A; TIGRFAM: Ribosome-binding factor A; IMG reference gene:2504824366; PFAM: Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A YP_004441608.1 KEGG: mho:MHO_2260 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824367 YP_004441609.1 IMG reference gene:2504824368 YP_004441610.1 COGs: COG0634 Hypoxanthine-guanine phosphoribosyltransferase; InterPro IPR000836; KEGG: pgn:PGN_0815 hypoxanthine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; PRIAM: Hypoxanthine phosphoribosyltransferase; SPTR: hypoxanthine phosphoribosyltransferase; IMG reference gene:2504824369; PFAM: Phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase YP_004441611.1 COGs: COG0563 adenylate kinase and related kinase; HAMAP: adenylate kinase; InterPro IPR000850:IPR006259; KEGG: bvu:BVU_1682 adenylate kinase; PFAM: adenylate kinase; SPTR: adenylate kinase; TIGRFAM: adenylate kinase, subfamily; IMG reference gene:2504824370; PFAM: adenylate kinase; TIGRFAM: adenylate kinases YP_004441612.1 COGs: COG0536 GTPase; HAMAP: GTPase obg; InterPro IPR006169:IPR002917:IPR014100:IPR005225; KEGG: pgn:PGN_0813 GTPase ObgE; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related; SPTR: Obg family GTPase CgtA; TIGRFAM: GTP-binding protein Obg/CgtA; Small GTP-binding protein; IMG reference gene:2504824371; PFAM: GTPase of unknown function; GTP1/OBG; TIGRFAM: Obg family GTPase CgtA YP_004441613.1 COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; KEGG: pin:Ping_2753 6-phosphogluconolactonase; SPTR: uncharacterized protein; IMG reference gene:2504824372 YP_004441614.1 COGs: COG2262 GTPase; InterPro IPR002917:IPR016496:IPR005225; KEGG: pgn:PGN_1813 GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; SPTR: GTP-binding protein HflX; TIGRFAM: GTP-binding protein, HflX; Small GTP-binding protein; IMG reference gene:2504824373; PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX; small GTP-binding protein domain YP_004441615.1 COGs: COG1560 Lauroyl/myristoyl acyltransferase; InterPro IPR004960; KEGG: pdi:BDI_0047 acetyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase; SPTR: Lipid A biosynthesis (KDO)2-(Lauroyl)-lipid IVA acyltransferase; IMG reference gene:2504824374; PFAM: Bacterial lipid A biosynthesis acyltransferase YP_004441616.1 SPTR: membrane protein; IMG reference gene:2504824375 YP_004441617.1 COGs: COG5016 Pyruvate/oxaloacetate carboxyltransferase; InterPro IPR000891; KEGG: pgn:PGN_0351 pyruvate carboxylase subunit B; PFAM: Pyruvate carboxyltransferase; PRIAM: Pyruvate carboxylase; SPTR: HMGL-like protein; IMG reference gene:2504824376; PFAM: HMGL-like; Conserved carboxylase domain YP_004441618.1 COGs: COG1808 membrane protein; InterPro IPR005240:IPR013031; KEGG: pgn:PGN_1480 hypothetical protein; PFAM: Protein of unknown function DUF389; SPTR: TIGR00341 family protein; TIGRFAM: Conserved hypothetical protein CHP00341; IMG reference gene:2504824377; PFAM: Domain of unknown function (DUF389); TIGRFAM: uncharacterized hydrophobic domain; TIGR00341 family protein YP_004441619.1 InterPro IPR019500; KEGG: pgn:PGN_1479 hypothetical protein; PFAM: Peptidase S46; SPTR: uncharacterized protein; IMG reference gene:2504824378; PFAM: Peptidase S46 YP_004441620.1 COGs: COG0336 tRNA-(guanine-N1)-methyltransferase; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; InterPro IPR002649:IPR016009; KEGG: pgn:PGN_1982 tRNA (guanine-N(1)-)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; PRIAM: tRNA (guanine-N(1)-)-methyltransferase; SPTR: tRNA (Guanine-N(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; IMG reference gene:2504824379; PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase YP_004441621.1 COGs: COG2131 Deoxycytidylate deaminase; InterPro IPR002125; KEGG: pru:PRU_0197 cytidine/deoxycytidylate deaminase zinc-binding domain-containing protein; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR: dCMP deaminase; IMG reference gene:2504824381; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region YP_004441622.1 COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151:IPR004447; KEGG: pgn:PGN_1788 carboxyl-terminal processing protease; PFAM: Peptidase S41; PDZ/DHR/GLGF; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: Peptidase, S41 family; TIGRFAM: Peptidase S41A, C-terminal protease; IMG reference gene:2504824382; PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc) YP_004441623.1 COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: pgi:PG1854 5-formyltetrahydrofolate cyclo-ligase family protein; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; IMG reference gene:2504824383; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase YP_004441624.1 COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277:IPR006237; KEGG: pgn:PGN_1618 methionine gamma-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; PRIAM: Methionine gamma-lyase; SPTR: Methionine gamma-lyase; TIGRFAM: Methionine gamma-lyase; IMG reference gene:2504824384; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: methionine gamma-lyase YP_004441625.1 KEGG: pgi:PG1798 immunoreactive 46 kDa antigen PG99; SPTR: Leucine rich repeat protein; IMG reference gene:2504824385 YP_004441626.1 InterPro IPR001611; KEGG: tde:TDE0206 surface antigen, SPTR: Leucine rich repeat protein; IMG reference gene:2504824386 YP_004441627.1 KEGG: hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824387 YP_004441628.1 COGs: COG2095 Multiple antibiotic transporter; InterPro IPR002771; KEGG: pgn:PGN_0328 hypothetical protein; PFAM: Multiple antibiotic resistance (MarC)-related; SPTR: MarC family integral membrane protein; IMG reference gene:2504824388; PFAM: MarC family integral membrane protein YP_004441629.1 COGs: COG0176 Transaldolase; HAMAP: transaldolase; InterPro IPR001585:IPR004731; KEGG: pgn:PGN_0333 translaldolase; PFAM: Transaldolase; SPTR: Fructose-6-phosphate aldolase; TIGRFAM: Transaldolase C; IMG reference gene:2504824389; PFAM: Transaldolase; TIGRFAM: fructose-6-phosphate aldolase, TalC/MipB family YP_004441630.1 COGs: COG0663 Carbonic anhydrase/acetyltransferase isoleucine patch superfamily; InterPro IPR001451; KEGG: ppn:Palpr_2986 acetyltransferase; SPTR: Bacterial transferase hexapeptide repeat protein; IMG reference gene:2504824390 YP_004441631.1 COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000587:IPR000994; KEGG: pgi:PG1210 M24 family peptidase; PFAM: Peptidase M24, structural domain; Creatinase; PRIAM: Xaa-Pro aminopeptidase; SPTR: Creatinase; IMG reference gene:2504824391; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain YP_004441632.1 KEGG: pgi:PG1209 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824392 YP_004441633.1 COGs: COG0297 Glycogen synthase; InterPro IPR013534; KEGG: pgn:PGN_1736 glycogen synthase; PFAM: Starch synthase catalytic region; PRIAM: Starch synthase; SPTR: Starch synthase catalytic domain protein; IMG reference gene:2504824394; PFAM: Starch synthase catalytic domain YP_004441634.1 IMG reference gene:2504824395 YP_004441635.1 COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR019752:IPR002880; KEGG: pdi:BDI_2807 oxidoreductase; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate/ketoisovalerate oxidoreductase; PRIAM: 2-oxoglutarate synthase; SPTR: 2-oxoacid:acceptor oxidoreductase, alpha subunit; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, alpha subunit; IMG reference gene:2504824396; PFAM: domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, alpha subunit YP_004441636.1 COGs: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase beta subunit; InterPro IPR011766; KEGG: pdi:BDI_2806 2-oxoglutarate ferredoxin oxidoreductase subunit beta; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: 2-oxoglutarate synthase; SPTR: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; IMG reference gene:2504824397; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_004441637.1 COGs: COG0495 Leucyl-tRNA synthetase; InterPro IPR015413:IPR002300:IPR013155:IPR002302; KEGG: pgn:PGN_0819 leucyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); Aminoacyl-tRNA synthetase, class Ia; Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; PRIAM: Leucine--tRNA ligase; SPTR: Leucine--tRNA ligase; TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; IMG reference gene:2504824398; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family YP_004441638.1 COGs: COG1284 conserved hypothetical protein; InterPro IPR003740:IPR019264; KEGG: pgn:PGN_1885 hypothetical protein; PFAM: Protein of unknown function DUF2179; Protein of unknown function DUF161; SPTR: membrane protein; IMG reference gene:2504824399; PFAM: Uncharacterized BCR, YitT family COG1284; Uncharacterized protein conserved in bacteria (DUF2179) YP_004441639.1 KEGG: pca:Pcar_0371 hypothetical protein; SPTR: uncharacterized protein; manually curated; IMG reference gene:2504824400; PFAM: Protein of unknown function (DUF2752) YP_004441640.1 InterPro IPR000326; KEGG: pgi:PG1773 PAP2 superfamily protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: PAP2 family protein; IMG reference gene:2504824401; PFAM: PAP2 superfamily YP_004441641.1 IMG reference gene:2504824402 YP_004441642.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910; KEGG: pgn:PGN_1347 TonB-dependent receptor exported protein; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug domain protein; IMG reference gene:2504824403 YP_004441643.1 COGs: COG2985 permease; InterPro IPR006512:IPR006037; KEGG: pgi:PG0562 hypothetical protein; PFAM: YidE/YbjL duplication; Regulator of K+ conductance, C-terminal; SPTR: TrkA C-terminal domain protein; TIGRFAM: YidE/YbjL duplication; IMG reference gene:2504824405; PFAM: Predicted Permease Membrane Region; TrkA-C domain; TIGRFAM: AspT/YidE/YbjL antiporter duplication domain YP_004441644.1 COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: pdi:BDI_2399 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Fe(3+)-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; IMG reference gene:2504824406; PFAM: ABC transporter YP_004441645.1 COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006099:IPR004608; KEGG: pgn:PGN_0457 methylmalonyl-CoA mutase small subunit; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; PRIAM: Methylmalonyl-CoA mutase; SPTR: Methylmalonyl-CoA mutase, small subunit; TIGRFAM: Methylmalonyl-CoA mutase, beta chain; IMG reference gene:2504824407; PFAM: Methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase, heterodimeric type, beta chain YP_004441646.1 COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006099:IPR006158:IPR006098:IPR006159; KEGG: pgn:PGN_0456 methylmalonyl-CoA mutase; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; Cobalamin (vitamin B12)-binding; PRIAM: Methylmalonyl-CoA mutase; SPTR: Methylmalonyl-CoA mutase; TIGRFAM: Methylmalonyl-CoA mutase, alpha chain, catalytic; Methylmalonyl-CoA mutase, C-terminal; IMG reference gene:2504824408; PFAM: Methylmalonyl-CoA mutase; B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase C-terminal domain YP_004441647.1 SPTR: uncharacterized protein; IMG reference gene:2504824409 YP_004441648.1 KEGG: bfs:BF1975 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824410 YP_004441649.1 SPTR: uncharacterized protein; IMG reference gene:2504824411; PFAM: Protein of unknown function (DUF1812) YP_004441650.1 KEGG: bfr:BF2215 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824412 YP_004441651.1 COGs: COG0461 Orotate phosphoribosyltransferase; HAMAP: Orotate phosphoribosyltransferase; InterPro IPR000836:IPR004467; KEGG: pgn:PGN_1140 orotate phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; PRIAM: Orotate phosphoribosyltransferase; SPTR: Orotate phosphoribosyltransferase; TIGRFAM: Orotate phosphoribosyl transferase; IMG reference gene:2504824413; PFAM: Phosphoribosyl transferase domain; TIGRFAM: orotate phosphoribosyltransferase YP_004441652.1 KEGG: pru:PRU_2394 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824414 YP_004441653.1 KEGG: ppn:Palpr_2616 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824415 YP_004441654.1 KEGG: pgn:PGN_1599 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824416 YP_004441655.1 COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR006153; KEGG: pgi:PG1792 sodium/hydrogen antiporter; PFAM: Cation/H+ exchanger; SPTR: Transporter, CPA2 family; IMG reference gene:2504824417; PFAM: Sodium/hydrogen exchanger family YP_004441656.1 COGs: COG0296 1 4-alpha-glucan branching enzyme; InterPro IPR004193:IPR006047:IPR006048:IPR006589; KEGG: pgn:PGN_1772 1,4-alpha-glucan branching enzyme; PFAM: Alpha-amylase, C-terminal all beta; Glycosyl hydrolase, family 13, catalytic region; Glycoside hydrolase, family 13, N-terminal; PRIAM: 1,4-alpha-glucan branching enzyme; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; SPTR: 1,4-alpha-glucan-branching enzyme; IMG reference gene:2504824418; PFAM: Alpha amylase, C-terminal all-beta domain; Alpha amylase, catalytic domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YP_004441657.1 COGs: COG1748 Saccharopine dehydrogenase and related protein; InterPro IPR005097; KEGG: pgi:PG0677 saccharopine dehydrogenase; PFAM: Saccharopine dehydrogenase; SPTR: Saccharopine dehydrogenase; IMG reference gene:2504824419; PFAM: Saccharopine dehydrogenase YP_004441658.1 COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); InterPro IPR001001; KEGG: pgn:PGN_1786 DNA polymerase III beta chain; PFAM: DNA polymerase III, beta chain; SMART: DNA polymerase III, beta chain; SPTR: DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta chain; IMG reference gene:2504824420; PFAM: DNA polymerase III beta subunit, N-terminal domain YP_004441659.1 COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR013520:IPR006055; KEGG: pgi:PG1852 exonuclease; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease; SPTR: Exonuclease; IMG reference gene:2504824421; PFAM: Exonuclease YP_004441660.1 COGs: COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; InterPro IPR003382:IPR007085:IPR005252; KEGG: pgn:PGN_1784 DNA/pantothenate metabolism flavoprotein; PFAM: Flavoprotein; DNA/pantothenate metabolism flavoprotein, C-terminal; PRIAM: Phosphopantothenate--cysteine ligase; SPTR: Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; IMG reference gene:2504824422; PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic YP_004441661.1 KEGG: pgn:PGN_1783 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824423 YP_004441662.1 COGs: COG0497 ATPase involved in DNA repair; InterPro IPR003395:IPR004604; KEGG: pgi:PG1849 DNA repair protein RecN; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; IMG reference gene:2504824424; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: DNA repair protein RecN YP_004441663.1 COGs: COG0566 rRNA methylase; InterPro IPR013123:IPR001537:IPR004441; KEGG: pgn:PGN_1781 tRNA:rRNA methyltransferase; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; SPTR: RNA methyltransferase, TrmH family, group 3; TIGRFAM: RNA methyltransferase TrmH, group 3; IMG reference gene:2504824425; PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, , group 3 YP_004441664.1 COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR006175:IPR006056; KEGG: pgn:PGN_1780 YjgF-like protein; PFAM: Endoribonuclease L-PSP; SPTR: endoribonuclease L-PSP; TIGRFAM: YjgF-like protein; IMG reference gene:2504824426; PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP YP_004441665.1 COGs: COG0084 Mg-dependent DNase; InterPro IPR001130; KEGG: pgn:PGN_0307 hypothetical protein; PFAM: Deoxyribonuclease, TatD-related; SPTR: Hydrolase, TatD family; IMG reference gene:2504824428; PFAM: TatD related DNase YP_004441666.1 COGs: COG0759 conserved hypothetical protein; HAMAP: Ribonuclease P; Protein of unknown function DUF37; InterPro IPR000100:IPR002696; KEGG: ami:Amir_7098 protein of unknown function DUF37; PFAM: Protein of unknown function DUF37; SPTR: uncharacterized protein; TIGRFAM: Protein of unknown function DUF37; IMG reference gene:2504824429; PFAM: Domain of unknown function DUF37; Ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial; conserved hypothetical protein YidD YP_004441667.1 COGs: COG1587 Uroporphyrinogen-III synthase; InterPro IPR003754; KEGG: pdi:BDI_3054 uroporphyrinogen-III synthase; PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; SPTR: Uroporphyrinogen-III synthase; IMG reference gene:2504824430; PFAM: Uroporphyrinogen-III synthase HemD YP_004441668.1 KEGG: pgn:PGN_0311 hypothetical protein; SPTR: membrane protein; IMG reference gene:2504824431 YP_004441669.1 COGs: COG0237 Dephospho-CoA kinase; HAMAP: Dephospho-CoA kinase; InterPro IPR001977; KEGG: ppn:Palpr_0851 dephosphO-CoA kinase; PRIAM: Dephospho-CoA kinase; SPTR: Dephospho-CoA kinase; TIGRFAM: Dephospho-CoA kinase; IMG reference gene:2504824432; PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase YP_004441670.1 KEGG: pgn:PGN_1486 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824433; PFAM: YbbR-like protein YP_004441671.1 COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: pgn:PGN_1485 hypothetical protein; PFAM: YajC; SPTR: Preprotein translocase, YajC subunit; TIGRFAM: YajC; IMG reference gene:2504824434; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit YP_004441672.1 COGs: COG1284 conserved hypothetical protein; InterPro IPR003740:IPR019264; KEGG: bpb:bpr_I0669 hypothetical protein; PFAM: Protein of unknown function DUF161; Protein of unknown function DUF2179; SPTR: membrane protein; IMG reference gene:2504824435; PFAM: Uncharacterized BCR, YitT family COG1284; Uncharacterized protein conserved in bacteria (DUF2179) YP_004441673.1 KEGG: bvu:BVU_2793 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824436 YP_004441674.1 COGs: COG0018 Arginyl-tRNA synthetase; HAMAP: Arginyl-tRNA synthetase, class Ic; InterPro IPR001278:IPR005148:IPR015945:IPR008909; KEGG: bvu:BVU_1081 arginyl-tRNA synthetase; PFAM: DALR anticodon binding; Arginyl-tRNA synthetase, class Ic, core; Arginyl tRNA synthetase, class Ic, N-terminal; PRIAM: Arginine--tRNA ligase; SPTR: Arginine--tRNA ligase; TIGRFAM: Arginyl-tRNA synthetase, class Ic; IMG reference gene:2504824437; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase YP_004441675.1 COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; InterPro IPR018318:IPR004506; KEGG: pgn:PGN_0366 tRNA-specific 2-thiouridylase MnmA; PFAM: tRNA methyl transferase-like; SPTR: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; TIGRFAM: tRNA-specific 2-thiouridylase; IMG reference gene:2504824438; PFAM: tRNA methyl transferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_004441676.1 SPTR: lipoprotein; IMG reference gene:2504824439 YP_004441677.1 InterPro IPR001611; KEGG: pgi:PG0350 internalin-related protein; SPTR: Leucine rich repeat protein; IMG reference gene:2504824440; PFAM: Leucine Rich Repeat YP_004441678.1 COGs: COG1502 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; InterPro IPR001736; KEGG: pgn:PGN_0466 cardiolipin synthetase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase; SPTR: Phospholipase D domain protein; IMG reference gene:2504824441; PFAM: Phospholipase D Active site motif YP_004441679.1 COGs: COG0254 Ribosomal protein L31; InterPro IPR002150; KEGG: pdi:BDI_1945 50S ribosomal protein L31 type B; PFAM: Ribosomal protein L31; SPTR: Ribosomal protein L31; TIGRFAM: Ribosomal protein L31; IMG reference gene:2504824443; PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31 YP_004441680.1 KEGG: tde:TDE0741 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824444 YP_004441681.1 IMG reference gene:2504824445 YP_004441682.1 KEGG: llo:LLO_3002 transmembrane protein (fibronectin III domain and GP5 C-terminal repeat); SPTR: uncharacterized protein; IMG reference gene:2504824446 YP_004441683.1 SPTR: uncharacterized protein; IMG reference gene:2504824447 YP_004441684.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: pgn:PGN_0274 RNA polymerase sigma-70 factor ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-70; IMG reference gene:2504824448; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004441685.1 COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: bfr:BF0817 undecaprenyl-phosphate glycosyl-1-phosphate transferase; PFAM: Bacterial sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: Bacterial sugar transferase; IMG reference gene:2504824449; PFAM: Bacterial sugar transferase YP_004441686.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: fbc:FB2170_10096 hypothetical protein; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase, group 2 family protein; IMG reference gene:2504824450; PFAM: Glycosyl transferase family 2 YP_004441687.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: pgn:PGN_1239 probable lipopolysaccharide biosynthesis glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase, group 2 family protein; IMG reference gene:2504824451; PFAM: Glycosyl transferase family 2 YP_004441688.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: pgn:PGN_1240 hypothetical protein; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyltransferase, group 1 family protein; IMG reference gene:2504824452; PFAM: Glycosyl transferases group 1 YP_004441689.1 KEGG: pgn:PGN_1242 hypothetical protein; SPTR: membrane protein; IMG reference gene:2504824453 YP_004441690.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: shw:Sputw3181_0057 glycosyl transferase family protein; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase, group 2 family protein; IMG reference gene:2504824454; PFAM: Glycosyl transferase family 2 YP_004441691.1 IMG reference gene:2504824455 YP_004441692.1 SPTR: uncharacterized protein; IMG reference gene:2504824456 YP_004441693.1 COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; InterPro IPR004165:IPR012792; KEGG: pgn:PGN_1162 CoA transferase subunit A; PFAM: Coenzyme A transferase; PRIAM: Butyrate--acetoacetate CoA-transferase; SPTR: Butyrate--acetoacetate CoA-transferase subunit A; TIGRFAM: 3-oxoacid CoA-transferase, subunit A; IMG reference gene:2504824457; PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, A subunit YP_004441694.1 KEGG: pgn:PGN_1163 hypothetical protein; SPTR: Beta-alanyl-CoA:ammonia lyase; IMG reference gene:2504824458; PFAM: Thioesterase superfamily YP_004441695.1 COGs: COG3246 conserved hypothetical protein; InterPro IPR008567; KEGG: fnu:FN1868 cytoplasmic protein; PFAM: Protein of unknown function DUF849, prokaryotic; SPTR: uncharacterized protein; IMG reference gene:2504824459; PFAM: Prokaryotic protein of unknown function (DUF849) YP_004441696.1 InterPro IPR013149; KEGG: pgn:PGN_1165 hypothetical protein; PFAM: Alcohol dehydrogenase, zinc-binding; SPTR: Oxidoreductase, zinc-binding dehydrogenase family protein; IMG reference gene:2504824460; PFAM: Zinc-binding dehydrogenase YP_004441697.1 COGs: COG1509 Lysine 2 3-aminomutase; InterPro IPR007197:IPR003739; KEGG: pgn:PGN_1166 L-lysine 2,3-aminomutase; PFAM: Radical SAM; PRIAM: Lysine 2,3-aminomutase; SPTR: Lysine-2,3-aminomutase; TIGRFAM: lysine-2,3-aminomutase; Protein of unknown function DUF160; IMG reference gene:2504824461; PFAM: Lysine-2,3-aminomutase; Radical SAM superfamily; TIGRFAM: KamA family protein; lysine-2,3-aminomutase YP_004441698.1 KEGG: pgn:PGN_1167 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824462 YP_004441699.1 COGs: COG0249 Mismatch repair ATPase (MutS family); InterPro IPR000432; KEGG: pgn:PGN_1168 probable DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; SPTR: MutS domain V protein; IMG reference gene:2504824463; PFAM: MutS domain V YP_004441700.1 InterPro IPR015130; KEGG: pgn:PGN_1169 D-lysine 5,6-aminomutase alpha subunit; PFAM: D-Lysine 5,6-aminomutase alpha subunit; SPTR: D-Lysine 5,6-aminomutase alpha subunit; IMG reference gene:2504824464; PFAM: D-Lysine 5,6-aminomutase alpha subunit YP_004441701.1 COGs: COG5012 cobalamin binding protein; InterPro IPR006158; KEGG: pgi:PG1074 D-lysine 5,6-aminomutase, beta subunit; PFAM: Cobalamin (vitamin B12)-binding; SPTR: B12 binding domain protein; IMG reference gene:2504824465; PFAM: B12 binding domain YP_004441702.1 COGs: COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit; InterPro IPR004165:IPR012791; KEGG: pgi:PG1075 coenzyme A transferase, beta subunit; PFAM: Coenzyme A transferase; PRIAM: Butyrate--acetoacetate CoA-transferase; SPTR: Butyrate--acetoacetate CoA-transferase subunit B; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; IMG reference gene:2504824466; PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit YP_004441703.1 COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: pgn:PGN_1172 acyl-CoA dehydrogenase short-chain specific; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Butyryl-CoA dehydrogenase; IMG reference gene:2504824467; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain YP_004441704.1 COGs: COG2086 Electron transfer flavoprotein beta subunit; InterPro IPR014730; KEGG: pgn:PGN_1173 electron transfer flavoprotein beta subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SPTR: Electron transfer flavoprotein subunit beta; IMG reference gene:2504824468; PFAM: Electron transfer flavoprotein domain YP_004441705.1 COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterPro IPR014730:IPR014731; KEGG: pgn:PGN_1174 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; Electron transfer flavoprotein, alpha subunit, C-terminal; SPTR: Electron transfer flavoprotein subunit alpha; IMG reference gene:2504824469; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain YP_004441706.1 COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: pgn:PGN_1175 enoyl-CoA hydratase; PFAM: Crotonase, core; PRIAM: 3-hydroxybutyryl-CoA dehydratase; SPTR: 3-hydroxybutyryl-CoA dehydratase; IMG reference gene:2504824470; PFAM: Enoyl-CoA hydratase/isomerase family YP_004441707.1 COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR006176:IPR006108; KEGG: pgn:PGN_1176 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; PRIAM: 3-hydroxybutyryl-CoA dehydrogenase; SPTR: 3-hydroxybutyryl-CoA dehydrogenase; IMG reference gene:2504824471; PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YP_004441708.1 SPTR: uncharacterized protein; IMG reference gene:2504824472 YP_004441709.1 COGs: COG0058 Glucan phosphorylase; InterPro IPR000811:IPR011834; KEGG: pdi:BDI_2005 glycosyltransferase family alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35; PRIAM: Phosphorylase; SPTR: Alpha-glucan phosphorylase; TIGRFAM: Alpha-glucan phosphorylase; IMG reference gene:2504824473; PFAM: Carbohydrate phosphorylase; Protein of unknown function (DUF3417); TIGRFAM: alpha-glucan phosphorylases YP_004441710.1 COGs: COG1409 phosphohydrolase; InterPro IPR004843; KEGG: tjr:TherJR_0151 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Ser/Thr phosphatase family protein; IMG reference gene:2504824474; PFAM: Calcineurin-like phosphoesterase YP_004441711.1 COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; InterPro IPR003959:IPR003593; KEGG: pgn:PGN_1200 recombination factor protein RarA; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: Recombination factor protein RarA; IMG reference gene:2504824475; PFAM: MgsA AAA+ ATPase C terminal; ATPase family associated with various cellular activities (AAA) YP_004441712.1 COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: bvu:BVU_1332 MutT family protein; PFAM: NUDIX hydrolase domain; SPTR: Hydrolase, NUDIX family; IMG reference gene:2504824476; PFAM: NUDIX domain YP_004441713.1 COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: bvu:BVU_0191 ROK family transcriptional repressor; PFAM: ROK; PRIAM: Glucokinase; SPTR: glucokinase; IMG reference gene:2504824477; PFAM: ROK family; TIGRFAM: ROK family protein ( glucokinase) YP_004441714.1 COGs: COG4690 Dipeptidase; InterPro IPR005322; KEGG: pgn:PGN_1103 dipeptidase; PFAM: Peptidase C69, dipeptidase A; SPTR: Peptidase, C69 family; IMG reference gene:2504824478; PFAM: Peptidase family C69 YP_004441715.1 COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I; KEGG: pgn:PGN_0169 probable metallo-beta-lactamase superfamily protein; SPTR: Metallo-beta-lactamase domain protein; IMG reference gene:2504824479; PFAM: Metallo-beta-lactamase superfamily YP_004441716.1 COGs: COG0252 L-asparaginase/ Glu-tRNAGln amidotransferase subunit D; InterPro IPR006034:IPR006033; KEGG: asparaginase; PFAM: Asparaginase/glutaminase; PRIAM: 1-alkyl-2-acetylglycerophosphocholine esterase; SPTR: L-asparaginase, type I; TIGRFAM: L-asparaginase, type I; IMG reference gene:2504824480; PFAM: Asparaginase; TIGRFAM: L-asparaginases, type I YP_004441717.1 COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: pmz:HMPREF0659_A6056 rhodanese-like protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: uncharacterized protein; IMG reference gene:2504824481; PFAM: Rhodanese-like domain YP_004441718.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910; KEGG: pmz:HMPREF0659_A5393 TonB-dependent receptor plug domain protein; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug domain protein; manually curated; IMG reference gene:2504824482; PFAM: TonB-dependent Receptor Plug Domain YP_004441719.1 COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: lby:Lbys_1903 transcriptional regulator; PFAM: Penicillinase repressor; SPTR: Transcriptional regulator, BlaI/MecI/CopY family; IMG reference gene:2504824486; PFAM: Penicillinase repressor YP_004441720.1 InterPro IPR008756:IPR003538:IPR006260; KEGG: outer membrane transport energization protein TonB; PFAM: Peptidase M56, BlaR1; Gram-negative bacterial tonB protein; SPTR: TonB-dependent receptor; TIGRFAM: TonB, C-terminal; IMG reference gene:2504824487; PFAM: BlaR1 peptidase M56; Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain YP_004441721.1 KEGG: pdi:BDI_3810 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824489 YP_004441722.1 COGs: COG1057 Nicotinic acid mononucleotide adenylyltransferase; HAMAP: nicotinate-nucleotide adenylyltransferase; InterPro IPR004820:IPR004821:IPR005248; KEGG: pgn:PGN_2007 nicotinic acid mononucleotide adenylyltransferase; PFAM: Cytidylyltransferase; PRIAM: Nicotinate-nucleotide adenylyltransferase; SPTR: Nicotinate-nucleotide adenylyltransferase; TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related; IMG reference gene:2504824490; PFAM: Cytidylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain YP_004441723.1 KEGG: pgi:PG0056 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824491 YP_004441724.1 COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR003374; KEGG: pgn:PGN_1653 thiamine biosynthesis lipoprotein ApbE; PFAM: ApbE-like lipoprotein; SPTR: ApbE family protein; IMG reference gene:2504824492; PFAM: ApbE family YP_004441725.1 COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: pgi:PG0310 nitroreductase family protein; PFAM: Nitroreductase-like; SPTR: Nitroreductase family protein; IMG reference gene:2504824493; PFAM: Nitroreductase family YP_004441726.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: pdi:BDI_0175 glycosyl transferase family protein; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase, group 2 family protein; IMG reference gene:2504824494; PFAM: Glycosyl transferase family 2 YP_004441727.1 KEGG: llo:LLO_3002 transmembrane protein (fibronectin III domain and GP5 C-terminal repeat); SPTR: uncharacterized protein; IMG reference gene:2504824496 YP_004441728.1 KEGG: bvu:BVU_0834 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824502 YP_004441729.1 SPTR: uncharacterized protein; IMG reference gene:2504824503 YP_004441730.1 KEGG: pgn:PGN_0558 hypothetical protein; SPTR: lipoprotein; IMG reference gene:2504824504 YP_004441731.1 KEGG: fma:FMG_0186 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824505 YP_004441732.1 KEGG: pgi:PG0495 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824506 YP_004441733.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR001375; KEGG: pdi:BDI_0713 alanyl dipeptidyl peptidase; SPTR: Peptidase, S9A/B/C family, catalytic domain protein; IMG reference gene:2504824507; PFAM: Prolyl oligopeptidase family YP_004441734.1 KEGG: cpi:Cpin_6432 hypothetical protein; SPTR: Outer membrane insertion signal domain protein; IMG reference gene:2504824508 YP_004441735.1 COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: bth:BT_3967 two-component system sensor protein histidine kinase; PFAM: Signal transduction histidine kinase, internal region; SPTR: Histidine kinase; IMG reference gene:2504824509; PFAM: Histidine kinase YP_004441736.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: pdi:BDI_0805 two-component system response regulator; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: LytTr DNA-binding domain protein; IMG reference gene:2504824510; PFAM: Response regulator receiver domain; LytTr DNA-binding domain YP_004441737.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: ppn:Palpr_0884 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; IMG reference gene:2504824511; PFAM: Outer membrane efflux protein YP_004441738.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: bfs:BF3963 membrane fusion protein transporter; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; IMG reference gene:2504824512; TIGRFAM: RND family efflux transporter, MFP subunit YP_004441739.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: dde:Dde_0965 AcrB/AcrD/AcrF family protein; PFAM: Acriflavin resistance protein; SPTR: Heavy metal efflux pump, CzcA family; IMG reference gene:2504824513; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family YP_004441740.1 SPTR: uncharacterized protein; IMG reference gene:2504824514 YP_004441741.1 IMG reference gene:2504824515 YP_004441742.1 COGs: COG3344 Retron-type reverse transcriptase; InterPro IPR000477:IPR013597; KEGG: smb:smi_1764 reverse transcriptase/maturase, group II introns; PFAM: RNA-directed DNA polymerase (reverse transcriptase); Group II intron, maturase-specific; SPTR: reverse transcriptase/maturase; IMG reference gene:2504824516; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain YP_004441743.1 SPTR: uncharacterized protein; IMG reference gene:2504824517 YP_004441744.1 COGs: COG0249 Mismatch repair ATPase (MutS family); HAMAP: DNA mismatch repair protein MutS, type 1; InterProIPR007696:IPR000432:IPR005748:IPR007695:IPR 007860:IPR007861; KEGG: pgi:PG0095 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS, clamp; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; SPTR: DNA mismatch repair protein MutS; TIGRFAM: DNA mismatch repair protein MutS, type 1; manually curated; IMG reference gene:2504824518; PFAM: MutS family domain IV; MutS domain II; MutS domain V; MutS domain I; MutS domain III; TIGRFAM: DNA mismatch repair protein MutS YP_004441745.1 KEGG: pgi:PG1052 transcriptional regulator, SPTR: Transcriptional regulator family protein; IMG reference gene:2504824519 YP_004441746.1 COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR004602:IPR003439; KEGG: pgi:PG2210 excinuclease ABC, A subunit; PFAM: ABC transporter-like; SPTR: Excinuclease ABC, A subunit; TIGRFAM: Excinuclease ABC, A subunit; IMG reference gene:2504824520; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit YP_004441747.1 COGs: COG0474 Cation transport ATPase; InterProIPR006408:IPR001757:IPR004014:IPR008250:IPR 005834:IPR006068; KEGG: pru:PRU_2007 calcium-translocating P-type ATPase, PMCA-type; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal; PRIAM: Calcium-transporting ATPase; SPTR: Calcium-translocating P-type ATPase, PMCA-type; TIGRFAM: ATPase, P-type, calcium-transporting, PMCA-type; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; IMG reference gene:2504824521; PFAM: E1-E2 ATPase; Cation transporting ATPase, C-terminus; haloacid dehalogenase-like hydrolase; Cation transporter/ATPase, N-terminus; TIGRFAM: plasma-membrane calcium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_004441748.1 COGs: COG2987 Urocanate hydratase; InterPro IPR000193; KEGG: pgn:PGN_1800 urocanate hydratase; PFAM: Urocanase; PRIAM: Urocanate hydratase; SPTR: Urocanate hydratase; TIGRFAM: Urocanase; IMG reference gene:2504824522; PFAM: Urocanase; TIGRFAM: urocanate hydratase YP_004441749.1 SPTR: uncharacterized protein; IMG reference gene:2504824523 YP_004441750.1 KEGG: fjo:Fjoh_3856 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824524 YP_004441751.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: fjo:Fjoh_3857 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; IMG reference gene:2504824525; PFAM: TonB-dependent Receptor Plug Domain YP_004441752.1 COGs: COG1624 conserved hypothetical protein; InterPro IPR014046:IPR003390; KEGG: pgi:PG1588 hypothetical protein; PFAM: DNA integrity scanning protein, DisA, N-terminal; SPTR: TIGR00159 family protein; TIGRFAM: Conserved hypothetical protein CHP00159; IMG reference gene:2504824526; PFAM: DisA bacterial checkpoint controller nucleotide-binding; TIGRFAM: TIGR00159 family protein YP_004441753.1 COGs: COG0294 Dihydropteroate synthase; InterPro IPR006390:IPR000489; KEGG: pgn:PGN_0522 dihydropteroate synthase; PFAM: Dihydropteroate synthase, DHPS; PRIAM: Dihydropteroate synthase; SPTR: Dihydropteroate synthase; TIGRFAM: Dihydropteroate synthase; IMG reference gene:2504824527; PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase YP_004441754.1 COGs: COG0427 acetyl-CoA hydrolase; InterPro IPR017821:IPR003702; KEGG: pgn:PGN_1341 CoA transferase; PFAM: acetyl-CoA hydrolase/transferase; PRIAM: acetyl-CoA hydrolase; SPTR: Succinate CoA transferase; TIGRFAM: Succinate CoA transferase; IMG reference gene:2504824528; PFAM: acetyl-CoA hydrolase/transferase N-terminal domain; TIGRFAM: succinate CoA transferases YP_004441755.1 COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299; KEGG: pdi:BDI_0960 alginate O-acetyltransferase; PFAM: Membrane bound O-acyl transferase, MBOAT; SPTR: alginate O-acetyltransferase AlgI; IMG reference gene:2504824529; PFAM: MBOAT family YP_004441756.1 InterPro IPR001087; KEGG: pdi:BDI_0959 periplasmic protein; PFAM: Lipase, GDSL; SPTR: GDSL-like protein; IMG reference gene:2504824530; PFAM: GDSL-like Lipase/Acylhydrolase YP_004441757.1 KEGG: pdi:BDI_0958 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824531 YP_004441758.1 KEGG: pdi:BDI_2655 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824532; PFAM: Protein of unknown function (DUF3109) YP_004441759.1 COGs: COG1482 Phosphomannose isomerase; InterPro IPR001250; KEGG: ppm:PPSC2_c1453 mannose-6-phosphate isomerase, class I; PFAM: Mannose-6-phosphate isomerase, type I; PRIAM: Mannose-6-phosphate isomerase; SPTR: Phosphomannose isomerase type I; IMG reference gene:2504824533; PFAM: Phosphomannose isomerase type I YP_004441760.1 SPTR: uncharacterized protein; IMG reference gene:2504824534 YP_004441761.1 InterPro IPR013656; KEGG: pgn:PGN_0746 hypothetical protein; PFAM: PAS fold-4; SPTR: uncharacterized protein; IMG reference gene:2504824535; PFAM: PAS fold YP_004441762.1 COGs: COG1576 conserved hypothetical protein; HAMAP: Ribosomal RNA large subunit methyltransferase H; InterPro IPR003742; KEGG: ribosomal RNA large subunit methyltransferase H; PFAM: SPOUT methyltransferase, predicted; SPTR: rRNA large subunit m3Psi methyltransferase RlmH; IMG reference gene:2504824536; PFAM: Predicted SPOUT methyltransferase; TIGRFAM: rRNA large subunit m3Psi methyltransferase RlmH YP_004441763.1 KEGG: chu:CHU_3583 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824537; PFAM: Protein of unknown function (DUF3127) YP_004441764.1 COGs: COG0180 Tryptophanyl-tRNA synthetase; InterPro IPR002306:IPR002305; KEGG: pgn:PGN_0137 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; PRIAM: Tryptophan--tRNA ligase; SPTR: Tryptophan--tRNA ligase; TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; IMG reference gene:2504824538; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase YP_004441765.1 KEGG: tva:TVAG_154640 surface antigen BspA-like; SPTR: uncharacterized protein; IMG reference gene:2504824540 YP_004441766.1 InterPro IPR005135; KEGG: pgn:PGN_0881 hypothetical protein; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase family protein; IMG reference gene:2504824541; PFAM: Endonuclease/Exonuclease/phosphatase family YP_004441767.1 COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: cpi:Cpin_6620 rhomboid family protein; PFAM: Peptidase S54, rhomboid; SPTR: Peptidase, S54 family; IMG reference gene:2504824542; PFAM: Rhomboid family YP_004441768.1 COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: pgn:PGN_0883 hypothetical protein; PFAM: Peptidase S54, rhomboid; SPTR: Peptidase, S54 family; IMG reference gene:2504824543; PFAM: Rhomboid family YP_004441769.1 COGs: COG1452 Organic solvent tolerance protein OstA; KEGG: pgi:PG1405 hypothetical protein; SPTR: Tat pathway signal sequence domain protein; IMG reference gene:2504824544 YP_004441770.1 COGs: COG2859 conserved hypothetical protein; InterPro IPR007497; KEGG: pgi:PG0356 hypothetical protein; PFAM: Protein of unknown function DUF541; SPTR: uncharacterized protein; IMG reference gene:2504824545; PFAM: Protein of unknown function (DUF541) YP_004441771.1 COGs: COG0492 Thioredoxin reductase; InterPro IPR005982:IPR013027; KEGG: pgn:PGN_1232 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Thioredoxin-disulfide reductase; SPTR: Thioredoxin-disulfide reductase; TIGRFAM: Thioredoxin reductase; IMG reference gene:2504824546; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase YP_004441772.1 COGs: COG4657 NADH:ubiquinone oxidoreductase subunit RnfA; InterPro IPR011293:IPR003667; KEGG: pdi:BDI_0511 electron transport complex protein RnfA; PFAM: Electron transport complex, Rnf/Nqr; SPTR: Electron transport complex, RnfABCDGE type, A subunit; TIGRFAM: Electron transport complex, RnfA; IMG reference gene:2504824547; PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: electron transport complex, RnfABCDGE type, A subunit YP_004441773.1 COGs: COG4660 NADH:ubiquinone oxidoreductase subunit RnfE; InterPro IPR010968:IPR003667; KEGG: pgn:PGN_1655 electron transport complex RsxE subunit; PFAM: Electron transport complex, Rnf/Nqr; SPTR: Electron transport complex, RnfABCDGE type, E subunit; TIGRFAM: Electron transport complex, RnfE; IMG reference gene:2504824548; PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: electron transport complex, RnfABCDGE type, E subunit YP_004441774.1 COGs: COG4659 NADH:ubiquinone oxidoreductase subunit RnfG; InterPro IPR010209:IPR007329; KEGG: pgn:PGN_1656 electron transport complex RnfABCDGE type G subunit; PFAM: FMN-binding; SPTR: Electron transport complex, RnfABCDGE type, G subunit; TIGRFAM: Electron transport complex, RnfG; IMG reference gene:2504824549; PFAM: FMN-binding domain; TIGRFAM: electron transport complex, RnfABCDGE type, G subunit YP_004441775.1 COGs: COG4658 NADH:ubiquinone oxidoreductase subunit RnfD; InterPro IPR011303:IPR004338; KEGG: bvu:BVU_3888 Na+-transporting NADH:ubiquinone oxidoreductase, electron transport complex protein RnfD; PFAM: NADH-quinone reductase NQR2/RnfD; SPTR: Electron transport complex protein RnfD; TIGRFAM: Electron transport complex, RnfD; IMG reference gene:2504824550; PFAM: NQR2, RnfD, RnfE family; TIGRFAM: electron transport complex, RnfABCDGE type, D subunit YP_004441776.1 COGs: COG4656 NADH:ubiquinone oxidoreductase subunit RnfC; HAMAP: Electron transport complex protein rnfC; InterPro IPR010208:IPR011538:IPR019554; KEGG: pgi:PG0304 electron transport complex, RnfABCDGE type, C subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; SPTR: Electron transport complex, RnfABCDGE type, C subunit; TIGRFAM: Electron transport complex, RnfC; IMG reference gene:2504824551; PFAM: Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain; TIGRFAM: electron transport complex, RnfABCDGE type, C subunit YP_004441777.1 COGs: COG2878 NADH:ubiquinone oxidoreductase subunit RnfB; InterPro IPR007202:IPR001450; KEGG: pdi:BDI_0516 ferredoxin; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Fe-S cluster; SPTR: Ferredoxin; IMG reference gene:2504824552; PFAM: Fe-S cluster; 4Fe-4S binding domain YP_004441778.1 InterPro IPR007359; KEGG: pgi:PG0302 hypothetical protein; PFAM: Positive regulator of sigma(E), RseC/MucC; SPTR: uncharacterized protein; IMG reference gene:2504824553; PFAM: Positive regulator of sigma(E), RseC/MucC YP_004441779.1 COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839; KEGG: pgi:PG0012 L-threonine-O-3-phosphate decarboxylase, PFAM: Aminotransferase, class I/II; PRIAM: Histidinol-phosphate transaminase; SPTR: Aminotransferase, class I/II; IMG reference gene:2504824554; PFAM: Aminotransferase class I and II YP_004441780.1 COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764; KEGG: pgi:PG0011 glycosy hydrolase family protein; PFAM: Glycoside hydrolase, family 3, N-terminal; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Glycosyl hydrolase family 3 N-terminal domain protein; IMG reference gene:2504824555; PFAM: Glycosyl hydrolase family 3 N terminal domain YP_004441781.1 SPTR: uncharacterized protein; IMG reference gene:2504824556 YP_004441782.1 InterPro IPR006120; KEGG: pmz:HMPREF0659_A5863 hypothetical protein; PFAM: Resolvase, helix-turn-helix region; SPTR: uncharacterized protein; manually curated; IMG reference gene:2504824557; PFAM: Helix-turn-helix domain of resolvase YP_004441783.1 SPTR: uncharacterized protein; IMG reference gene:2504824558 YP_004441784.1 InterPro IPR006120; KEGG: pmz:HMPREF0659_A5863 hypothetical protein; PFAM: Resolvase, helix-turn-helix region; SPTR: uncharacterized protein; manually curated; IMG reference gene:2504824559; PFAM: Helix-turn-helix domain of resolvase YP_004441785.1 InterPro IPR003772; KEGG: pgn:PGN_0187 hypothetical protein; PFAM: Protein of unknown function DUF177; SPTR: uncharacterized protein; IMG reference gene:2504824561; PFAM: Uncharacterized ACR, COG1399 YP_004441786.1 COGs: COG0333 Ribosomal protein L32; HAMAP: Ribosomal protein L32p; InterPro IPR002677; KEGG: pgn:PGN_0188 50S ribosomal protein L32; PFAM: Ribosomal protein L32p; SPTR: Ribosomal protein L32; TIGRFAM: Ribosomal protein L32p; IMG reference gene:2504824562; PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32 YP_004441787.1 COGs: COG1592 Rubrerythrin; InterPro IPR003251; KEGG: pdi:BDI_3032 rubrerythrin; PFAM: Rubrerythrin; SPTR: Rubrerythrin; IMG reference gene:2504824563; PFAM: Rubrerythrin YP_004441788.1 KEGG: pgi:PG0884 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824564 YP_004441789.1 KEGG: pgi:PG0883 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824565 YP_004441790.1 KEGG: pgi:PG0882 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824566 YP_004441791.1 KEGG: pru:PRU_0934 prophage PRU01 transcriptional regulator; SPTR: uncharacterized protein; IMG reference gene:2504824567 YP_004441792.1 COGs: COG0468 RecA/RadA recombinase; HAMAP: DNA recombination and repair protein RecA; InterPro IPR003593:IPR013765; KEGG: bth:BT_4610 recombinase A; PFAM: DNA recombination and repair protein RecA; SMART: ATPase, AAA+ type, core; SPTR: RecA protein; TIGRFAM: DNA recombination and repair protein RecA; IMG reference gene:2504824568; PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA YP_004441793.1 COGs: COG0370 Fe2+ transport system protein B; InterProIPR005225:IPR003373:IPR007167:IPR002917:IPR 011619:IPR011642:IPR011640; KEGG: pgi:PG1294 ferrous iron transport protein B; PFAM: Ferrous iron transport protein B, N-terminal; GTP-binding protein, HSR1-related; Ferrous iron transporter, FeoA subunit; Nucleoside recognition; Ferrous iron transport protein B, C-terminal; SPTR: Ferrous iron transport protein B; TIGRFAM: Ferrous iron transport protein B; Small GTP-binding protein; IMG reference gene:2504824569; PFAM: FeoA domain; Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; small GTP-binding protein domain YP_004441794.1 InterPro IPR011701; KEGG: pth:PTH_0766 hypothetical protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Transporter, major facilitator family protein; manually curated; IMG reference gene:2504824570; PFAM: Major Facilitator Superfamily YP_004441795.1 COGs: COG0621 2-methylthioadenine synthetase; HAMAP: tRNA-i(6)A37 modification enzyme MiaB; InterProIPR006638:IPR005839:IPR006463:IPR013848:IPR 007197:IPR002792; KEGG: bvu:BVU_1165 (dimethylallyl)adenosine tRNA methylthiotransferase; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: tRNA-i(6)A37 thiotransferase enzyme MiaB; TIGRFAM: Methylthiotransferase; tRNA-i(6)A37 modification enzyme MiaB; IMG reference gene:2504824571; PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; radical SAM methylthiotransferase, MiaB/RimO family YP_004441796.1 InterPro IPR001450; KEGG: pgn:PGN_0895 ferredoxin 4Fe-4S; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: Ferredoxin; IMG reference gene:2504824572; PFAM: 4Fe-4S binding domain YP_004441797.1 COGs: COG1154 Deoxyxylulose-5-phosphate synthase; HAMAP: Deoxyxylulose-5-phosphate synthase; InterPro IPR005477:IPR005475:IPR005476; KEGG: pgn:PGN_2081 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate synthase; SPTR: 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: Deoxyxylulose-5-phosphate synthase; IMG reference gene:2504824573; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase YP_004441798.1 COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148:IPR006037; KEGG: pgn:PGN_2082 potassium transporter peripheral membrane component; PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; SPTR: TrkA C-terminal domain protein; IMG reference gene:2504824574; PFAM: TrkA-N domain; TrkA-C domain YP_004441799.1 COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445; KEGG: pgi:PG2219 potassium uptake protein TrkH; PFAM: Cation transporter; SPTR: Cation transport protein; IMG reference gene:2504824575; PFAM: Cation transport protein YP_004441800.1 COGs: COG0795 permease; InterPro IPR005495; KEGG: pgn:PGN_1471 hypothetical protein; PFAM: Permease YjgP/YjgQ, predicted; SPTR: Permease, YjgP/YjgQ family; IMG reference gene:2504824576; PFAM: Predicted permease YjgP/YjgQ family YP_004441801.1 COGs: COG1418 HD superfamily hydrolase; HAMAP: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; InterProIPR004087:IPR003607:IPR017705:IPR006675:IPR 018111:IPR006674; KEGG: pdi:BDI_1891 phosphodiesterase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; K Homology, type 1, subgroup; SMART: Metal-dependent phosphohydrolase, HD region; K Homology; SPTR: YmdA/YtgF family protein; TIGRFAM: 2,3-cyclic-nucleotide 2-phosphodiesterase; HDIG; IMG reference gene:2504824577; PFAM: KH domain; HD domain; Domain of unknown function (DUF3552); TIGRFAM: conserved hypothetical protein YmdA/YtgF; uncharacterized domain HDIG YP_004441802.1 KEGG: bvu:BVU_2079 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824578; PFAM: Cell division protein ZapA YP_004441803.1 KEGG: pgn:PGN_1561 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824579 YP_004441804.1 COGs: COG1530 Ribonuclease G and E; InterPro IPR004659:IPR003029:IPR019307; KEGG: pgn:PGN_1391 ribonuclease E; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA binding domain; SPTR: S1 RNA binding domain protein; TIGRFAM: Ribonuclease E/G; manually curated; IMG reference gene:2504824580; PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family YP_004441805.1 COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: pgn:PGN_1393 DNA-binding protein HU; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; SPTR: DNA-binding protein HU; IMG reference gene:2504824581; PFAM: Bacterial DNA-binding protein YP_004441806.1 HAMAP: Ribosomal protein S20; InterPro IPR002583; KEGG: pdi:BDI_3552 30S ribosomal protein S20; PFAM: Ribosomal protein S20; SPTR: 30S ribosomal protein S20; TIGRFAM: Ribosomal protein S20; IMG reference gene:2504824583; PFAM: Ribosomal protein S20; TIGRFAM: ribosomal protein S20 YP_004441807.1 COGs: COG0061 sugar kinase; HAMAP: inorganic polyphosphate/ATP-NAD kinase; InterPro IPR002504; KEGG: pgi:PG0629 inorganic polyphosphate/ATP-NAD kinase; PFAM: ATP-NAD/AcoX kinase; SPTR: NAD(+)/NADH kinase; IMG reference gene:2504824585; PFAM: ATP-NAD kinase YP_004441808.1 InterPro IPR014905; KEGG: apr:Apre_0734 HIRAN; PFAM: HIP116, Rad5p N-terminal; SPTR: HIRAN domain protein; IMG reference gene:2504824586; PFAM: HIRAN domain YP_004441809.1 InterPro IPR001623; KEGG: mru:mru_1668 hypothetical protein; PFAM: Heat shock protein DnaJ, N-terminal; SPTR: DnaJ domain protein; IMG reference gene:2504824587; PFAM: DnaJ domain YP_004441810.1 KEGG: pgn:PGN_2078 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824588; PFAM: Protein of unknown function (DUF2851) YP_004441811.1 COGs: COG0836 Mannose-1-phosphate guanylyltransferase; InterPro IPR005835; KEGG: pgi:PG2215 mannose-1-phosphate guanylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Mannose-1-phosphate guanylyltransferase; SPTR: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; IMG reference gene:2504824589; PFAM: Nucleotidyl transferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_004441812.1 COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: pgn:PGN_0870 rod shape-determining protein RodA; PFAM: Cell cycle protein; SPTR: rod shape-determining protein RodA; IMG reference gene:2504824590; PFAM: Cell cycle protein YP_004441813.1 COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311:IPR001460; KEGG: pgi:PG1393 penicillin-binding protein 2, PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: penicillin-binding protein 2; IMG reference gene:2504824591; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2 YP_004441814.1 InterPro IPR007227; KEGG: pgn:PGN_0868 hypothetical protein; SPTR: Rod shape-determining protein MreD; TIGRFAM: Cell shape-determining protein MreD; IMG reference gene:2504824592; TIGRFAM: rod shape-determining protein MreD YP_004441815.1 COGs: COG1792 Cell shape-determining protein; InterPro IPR007221; KEGG: pgn:PGN_0867 rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; SPTR: Rod shape-determining protein MreC; IMG reference gene:2504824593; PFAM: rod shape-determining protein MreC YP_004441816.1 COGs: COG1077 Actin-like ATPase involved in cell morphogenesis; InterPro IPR004753; KEGG: pgn:PGN_0866 rod shape-determining protein MreB; PFAM: Cell shape determining protein MreB/Mrl; SPTR: Mbl protein; IMG reference gene:2504824594; PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family YP_004441817.1 COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); InterPro IPR013982:IPR011607; KEGG: pgn:PGN_0865 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme, formylation region; MGS-like; PRIAM: Phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme, formylation region; SPTR: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; IMG reference gene:2504824595; PFAM: AICARFT/IMPCHase bienzyme; MGS-like domain; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_004441818.1 COGs: COG0039 Malate/lactate dehydrogenase; InterPro IPR001236; KEGG: pgi:PG1949 malate dehydrogenase; PFAM: Lactate/malate dehydrogenase; SPTR: Lactate/malate dehydrogenase, NAD binding domain protein; IMG reference gene:2504824596; PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain YP_004441819.1 COGs: COG0605 Superoxide dismutase; InterPro IPR019831:IPR019832; KEGG: pgn:PGN_0564 superoxide dismutase Fe-Mn; PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; SPTR: Superoxide dismutase (Fe); IMG reference gene:2504824597; PFAM: Iron/manganese superoxide dismutases, alpha-hairpin domain; Iron/manganese superoxide dismutases, C-terminal domain YP_004441820.1 COGs: COG1825 Ribosomal protein L25 (general stress protein Ctc); HAMAP: Ribosomal protein L25; InterPro IPR001021:IPR020055; KEGG: pgn:PGN_0279 50S ribosomal protein L25/general stress protein Ctc; PFAM: Ribosomal protein L25, N-terminal; SPTR: Ribosomal protein L25, Ctc-form; TIGRFAM: Ribosomal protein L25; IMG reference gene:2504824598; PFAM: Ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form YP_004441821.1 COGs: COG0539 Ribosomal protein S1; InterPro IPR003029; KEGG: pgn:PGN_1088 30S ribosomal protein S1; PFAM: Ribosomal protein S1, RNA binding domain; SPTR: ribosomal protein S1; IMG reference gene:2504824599; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1 YP_004441822.1 InterPro IPR004919; KEGG: hypothetical protein; PFAM: Protein of unknown function DUF262; SPTR: uncharacterized protein; IMG reference gene:2504824601; PFAM: Protein of unknown function DUF262 YP_004441823.1 KEGG: lby:Lbys_0995 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824603 YP_004441824.1 COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase; IMG reference gene:2504824604; PFAM: Transposase YP_004441825.1 KEGG: pru:PRU_2819 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824605 YP_004441826.1 KEGG: bvu:BVU_1443 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824606 YP_004441827.1 IMG reference gene:2504824607 YP_004441828.1 IMG reference gene:2504824608 YP_004441829.1 KEGG: cyn:Cyan7425_5392 helicase domain protein; SPTR: uncharacterized protein; IMG reference gene:2504824609 YP_004441830.1 SPTR: uncharacterized protein; IMG reference gene:2504824610 YP_004441831.1 KEGG: pgi:PG0616 thioredoxin, SPTR: uncharacterized protein; IMG reference gene:2504824612 YP_004441832.1 COGs: COG0016 Phenylalanyl-tRNA synthetase alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain; InterPro IPR004529:IPR004188:IPR002319; KEGG: pdi:BDI_0836 phenylalanyl-tRNA synthetase subunit alpha; PFAM: Phenylalanyl-tRNA synthetase alpha chain; Phenylalanyl-tRNA synthetase, class II, N-terminal; SPTR: Phenylalanine--tRNA ligase, alpha subunit; TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; IMG reference gene:2504824613; PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit YP_004441833.1 COGs: COG0177 EndoIII-related endonuclease; InterPro IPR003265:IPR003651:IPR005759; KEGG: pgi:PG1772 endonuclease III; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; SPTR: Endonuclease III; TIGRFAM: Endonuclease III/Nth; IMG reference gene:2504824614; PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: endonuclease III YP_004441834.1 COGs: COG0216 Protein chain release factor A; HAMAP: Peptide chain release factor 1; InterPro IPR004373:IPR005139:IPR000352; KEGG: bvu:BVU_0094 peptide chain release factor 1; PFAM: Peptide chain release factor; Class I peptide chain release factor; SPTR: Peptide chain release factor 1; TIGRFAM: Peptide chain release factor 1; IMG reference gene:2504824615; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1 YP_004441835.1 COGs: COG0150 Phosphoribosylaminoimidazole (AIR) synthetase; InterPro IPR010918; KEGG: pgn:PGN_2023 phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, C-terminal; SPTR: uncharacterized protein; IMG reference gene:2504824616; PFAM: AIR synthase related protein, C-terminal domain YP_004441836.1 COGs: COG1705 Muramidase (flagellum-specific); InterPro IPR013338:IPR002482:IPR002901:IPR018392; KEGG: pgn:PGN_2024 hemagglutinin; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Peptidoglycan-binding lysin domain; SMART: Lysozyme subfamily 2; Peptidoglycan-binding Lysin subgroup; SPTR: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; IMG reference gene:2504824617; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; LysM domain YP_004441837.1 COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593:IPR003439; KEGG: pdi:BDI_1889 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; IMG reference gene:2504824618; PFAM: ABC transporter YP_004441838.1 COGs: COG0816 endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); HAMAP: Holliday junction resolvase; InterPro IPR006641:IPR005227; KEGG: pgn:PGN_2069 Holliday junction resolvase-like protein; PFAM: Resolvase, holliday junction-type, YqgF-like; SMART: Resolvase, RNase H-like fold; SPTR: RNAse H domain protein, YqgF family; TIGRFAM: Resolvase, holliday junction-type, YqgF-like; IMG reference gene:2504824619; PFAM: Uncharacterised protein family (UPF0081); TIGRFAM: RNAse H-fold protein YqgF YP_004441839.1 COGs: COG0242 N-formylmethionyl-tRNA deformylase; HAMAP: Formylmethionine deformylase; InterPro IPR000181; KEGG: pgi:PG2201 peptide deformylase; PFAM: Formylmethionine deformylase; PRIAM: Peptide deformylase; SPTR: Peptide deformylase; TIGRFAM: Formylmethionine deformylase; IMG reference gene:2504824620; PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase YP_004441840.1 InterPro IPR019734:IPR001440:IPR013105; KEGG: pgi:PG2200 TPR domain-containing protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: Tetratricopeptide repeat protein; IMG reference gene:2504824621; PFAM: Tetratricopeptide repeat YP_004441841.1 COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593:IPR003439; KEGG: pgi:PG2199 ABC transporter, ATP-binding protein, PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; IMG reference gene:2504824622; PFAM: ABC transporter YP_004441842.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593:IPR001140:IPR003439; KEGG: pgi:PG1719 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; IMG reference gene:2504824623; PFAM: ABC transporter; ABC transporter transmembrane region YP_004441843.1 COGs: COG1160 GTPase; InterPro IPR005225:IPR002917; KEGG: bth:BT_1837 GTP-binding protein, GTPase; PFAM: GTP-binding protein, HSR1-related; SPTR: Hydrogenase maturation GTPase HydF; TIGRFAM: Small GTP-binding protein; IMG reference gene:2504824624; PFAM: GTPase of unknown function; TIGRFAM: hydrogenase maturation GTPase HydF; small GTP-binding protein domain YP_004441844.1 COGs: COG1060 Thiamine biosynthesis protein ThiH; InterPro IPR007197:IPR010722; KEGG: iron-only hydrogenase maturation protein HydG; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; SPTR: Iron-only hydrogenase maturation rSAM protein HydG; IMG reference gene:2504824625; PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: iron-only hydrogenase maturation rSAM protein HydG; thiazole biosynthesis protein ThiH YP_004441845.1 COGs: COG0502 Biotin synthase; InterPro IPR006638:IPR007197; KEGG: bth:BT_1835 biotin synthase; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Iron-only hydrogenase maturation rSAM protein HydE; IMG reference gene:2504824626; PFAM: Radical SAM superfamily; TIGRFAM: iron-only hydrogenase maturation rSAM protein HydE YP_004441846.1 COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain; InterPro IPR001450:IPR004108; KEGG: bth:BT_1834 hydrogenase; PFAM: Iron hydrogenase, large subunit, C-terminal; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; PRIAM: Ferredoxin hydrogenase; SPTR: 4Fe-4S binding domain protein; IMG reference gene:2504824627; PFAM: Iron only hydrogenase large subunit, C-terminal domain; 4Fe-4S binding domain YP_004441847.1 KEGG: pna:Pnap_3264 hypothetical protein; SPTR: Leucine rich repeat protein; IMG reference gene:2504824631 YP_004441848.1 InterPro IPR003961; SPTR: uncharacterized protein; IMG reference gene:2504824632 YP_004441849.1 IMG reference gene:2504824633 YP_004441850.1 InterPro IPR001611; KEGG: pgi:PG0350 internalin-related protein; SPTR: Leucine rich repeat protein; IMG reference gene:2504824634 YP_004441851.1 InterPro IPR005151; KEGG: bfs:BF2365 hypothetical protein; PFAM: Peptidase S41; SPTR: Peptidase, S41 family; IMG reference gene:2504824635; PFAM: Peptidase family S41 YP_004441852.1 COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit; HAMAP: DNA-directed RNA polymerase subunit beta'; InterProIPR006592:IPR012754:IPR007080:IPR000722:IPR 007066:IPR007083:IPR007081; KEGG: pgi:PG0395 DNA-directed RNA polymerase subunit beta'; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5; SMART: RNA polymerase, N-terminal; SPTR: DNA-directed RNA polymerase, beta' subunit; TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; IMG reference gene:2504824636; PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 5; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, predominant form YP_004441853.1 COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; HAMAP: DNA-directed RNA polymerase subunit beta; InterProIPR010243:IPR007644:IPR007642:IPR007645:IPR 019462:IPR007120:IPR007641; KEGG: pgn:PGN_1571 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 2; RNA polymerase, beta subunit, protrusion; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2, domain 7; SPTR: DNA-directed RNA polymerase, beta subunit; TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; manually curated; IMG reference gene:2504824637; PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit YP_004441854.1 COGs: COG0222 Ribosomal protein L7/L12; HAMAP: Ribosomal protein L7/L12; InterPro IPR000206:IPR013823; KEGG: pgn:PGN_1572 50S ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12, C-terminal; SPTR: Ribosomal protein L7/L12; TIGRFAM: Ribosomal protein L7/L12; IMG reference gene:2504824638; PFAM: Ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12 YP_004441855.1 COGs: COG0244 Ribosomal protein L10; InterPro IPR001790; KEGG: pgn:PGN_1573 50S ribosomal protein L10; PFAM: Ribosomal protein L10; SPTR: Ribosomal protein L10; IMG reference gene:2504824639; PFAM: Ribosomal protein L10 YP_004441856.1 COGs: COG0081 Ribosomal protein L1; InterPro IPR005878:IPR002143; KEGG: pdi:BDI_2267 50S ribosomal protein L1; PFAM: Ribosomal protein L1; SPTR: Ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; IMG reference gene:2504824640; PFAM: Ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast YP_004441857.1 COGs: COG0080 Ribosomal protein L11; InterPro IPR000911:IPR006519:IPR020784:IPR020783; KEGG: pgn:PGN_1575 50S ribosomal protein L11; PFAM: Ribosomal protein L11, N-terminal; Ribosomal protein L11, C-terminal; SMART: Ribosomal protein L11; SPTR: Ribosomal protein L11; TIGRFAM: Ribosomal protein L11, bacterial-type; IMG reference gene:2504824641; PFAM: Ribosomal protein L11, RNA binding domain; Ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11 YP_004441858.1 COGs: COG0250 Transcription antiterminator; InterPro IPR006645:IPR005824:IPR001062; KEGG: pdi:BDI_2269 transcription anti-termination protein; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; SMART: Transcription antitermination protein, NusG, N-terminal; KOW; SPTR: Transcription termination/antitermination factor NusG; TIGRFAM: Transcription antitermination protein, NusG; IMG reference gene:2504824642; PFAM: Transcription termination factor nusG; KOW motif; TIGRFAM: transcription termination/antitermination factor NusG YP_004441859.1 InterPro IPR005807:IPR001901; KEGG: pgn:PGN_1577 preprotein translocase SecE subunit; PFAM: Protein secE/sec61-gamma protein; SPTR: Preprotein translocase, SecE subunit; TIGRFAM: SecE subunit of protein translocation complex; IMG reference gene:2504824643; PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial YP_004441860.1 COGs: COG0050 GTPase - translation elongation factors; InterProIPR004541:IPR005225:IPR000795:IPR004161:IPR 004160; KEGG: pgi:PG0387 elongation factor Tu; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal; SPTR: Translation elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; IMG reference gene:2504824645; PFAM: Elongation factor Tu domain 2; Elongation factor Tu C-terminal domain; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU YP_004441861.1 COGs: COG4974 Site-specific recombinase XerD; HAMAP: Tyrosine recombinase xerC; InterPro IPR004107:IPR002104:IPR003489; KEGG: pgn:PGN_1579 site-specific recombinase; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; Ribosomal protein S30Ae/sigma 54 modulation protein; SPTR: ribosomal subunit interface protein; IMG reference gene:2504824648; PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; Phage integrase, N-terminal SAM-like domain; Phage integrase family; TIGRFAM: ribosomal subunit interface protein YP_004441862.1 SPTR: uncharacterized protein; IMG reference gene:2504824649 YP_004441863.1 COGs: COG0624 acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650; KEGG: pgi:PG0561 M20/M25/M40 family peptidase; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: Beta-Ala-His dipeptidase; SPTR: Peptidase dimerization domain protein; IMG reference gene:2504824650; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain YP_004441864.1 COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; HAMAP: 5-methylthioadenosine/S-adenosylhomocysteine deaminase; InterPro IPR006680; KEGG: pgn:PGN_1411 N-ethylammeline chlorohydrolase; PFAM: Amidohydrolase 1; PRIAM: S-adenosylhomocysteine deaminase; SPTR: Amidohydrolase family protein; IMG reference gene:2504824651; PFAM: Amidohydrolase family YP_004441865.1 COGs: COG0005 Purine nucleoside phosphorylase; InterPro IPR011268:IPR011270:IPR000845; KEGG: pgn:PGN_1412 purine nucleoside phosphorylase; PFAM: Nucleoside phosphorylase; PRIAM: Purine-nucleoside phosphorylase; SPTR: Purine nucleoside phosphorylase I, inosine and guanosine-specific; TIGRFAM: Purine nucleoside phosphorylase I, inosine/guanosine-specific; Inosine guanosine/xanthosine phosphorylase; IMG reference gene:2504824652; PFAM: Phosphorylase superfamily; TIGRFAM: purine nucleoside phosphorylase I, inosine and guanosine-specific; inosine guanosine and xanthosine phosphorylase family YP_004441866.1 KEGG: pgn:PGN_1645 dipeptidyl-peptidase III; SPTR: uncharacterized protein; IMG reference gene:2504824653 YP_004441867.1 InterPro IPR001296; KEGG: pgi:PG1042 glycogen synthase, PFAM: Glycosyl transferase, group 1; PRIAM: Glycogen(starch) synthase; SPTR: Starch synthase; IMG reference gene:2504824654; PFAM: Glycogen synthase YP_004441868.1 KEGG: bvu:BVU_1221 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824655 YP_004441869.1 KEGG: edi:EDI_162200 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824656 YP_004441870.1 InterPro IPR018573; KEGG: mcp:MCAP_0050 restriction endonuclease; PFAM: Restriction endonuclease, type II, AlwI; SPTR: AlwI restriction endonuclease; IMG reference gene:2504824659; PFAM: AlwI restriction endonuclease YP_004441871.1 COGs: COG0338 Site-specific DNA methylase; InterPro IPR012326:IPR012327; KEGG: mpe:MYPE1790 adenine-specific DNA methyltransferase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: DNA adenine methylase; TIGRFAM: DNA adenine methylase; IMG reference gene:2504824660; PFAM: D12 class N6 adenine-specific DNA methyltransferase; TIGRFAM: DNA adenine methylase (dam) YP_004441872.1 COGs: COG3392 adenine-specific DNA methylase; InterPro IPR001387:IPR012327; KEGG: mpe:MYPE1780 adenine-specific DNA methyltransferase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; Helix-turn-helix type 3; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SMART: Helix-turn-helix type 3; SPTR: DNA-binding helix-turn-helix protein; IMG reference gene:2504824661; PFAM: Helix-turn-helix; D12 class N6 adenine-specific DNA methyltransferase YP_004441873.1 InterPro IPR000866; KEGG: pgn:PGN_1181 probable thiol:disulfide oxidoreductase; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Antioxidant, AhpC/TSA family; IMG reference gene:2504824662; PFAM: AhpC/TSA family YP_004441874.1 KEGG: bvu:BVU_2782 biotin synthesis protein BioC; SPTR: biotin biosynthesis protein BioC; IMG reference gene:2504824663; PFAM: Methyltransferase domain; TIGRFAM: biotin biosynthesis protein BioC YP_004441875.1 COGs: COG2830 conserved hypothetical protein; InterPro IPR007398; KEGG: pgn:PGN_0468 hypothetical protein; PFAM: Protein of unknown function DUF452; SPTR: uncharacterized protein; IMG reference gene:2504824664; PFAM: Protein of unknown function (DUF452) YP_004441876.1 COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839; KEGG: pdi:BDI_1915 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase, class I/II; PRIAM: 8-amino-7-oxononanoate synthase; SPTR: 8-amino-7-oxononanoate synthase; IMG reference gene:2504824665; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase YP_004441877.1 COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR000774:IPR001179; KEGG: pgn:PGN_0742 probable FKBP-type peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal; SPTR: peptidyl-prolyl cis-trans isomerase, FKBP-type; IMG reference gene:2504824666; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YP_004441878.1 COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR000774:IPR001179; KEGG: pdi:BDI_2705 FKBP-type peptidyl-prolyl cis-trans isomerase, outer membrane protein precursor; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal; PRIAM: Peptidylprolyl isomerase; SPTR: Peptidyl-prolyl cis-trans isomerase, FKBP-type; IMG reference gene:2504824667; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YP_004441879.1 COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR000774:IPR001179; KEGG: pdi:BDI_2706 peptidyl-prolyl cis-trans isomerase, FKBP-type; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal; PRIAM: Peptidylprolyl isomerase; SPTR: Peptidyl-prolyl cis-trans isomerase, FKBP-type; IMG reference gene:2504824668; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YP_004441880.1 COGs: COG0124 Histidyl-tRNA synthetase; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; InterPro IPR015807:IPR002314:IPR004154; KEGG: pgi:PG2062 histidyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Anticodon-binding; PRIAM: Histidine--tRNA ligase; SPTR: Histidine--tRNA ligase; TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; IMG reference gene:2504824669; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase YP_004441881.1 COGs: COG0262 Dihydrofolate reductase; InterPro IPR001796; KEGG: mrb:Mrub_1855 dihydrofolate reductase; PFAM: Dihydrofolate reductase region; PRIAM: Dihydrofolate reductase; SPTR: Dihydrofolate reductase; IMG reference gene:2504824670; PFAM: Dihydrofolate reductase YP_004441882.1 InterPro IPR003343; KEGG: Ig domain protein group 2 domain protein; PFAM: Bacterial Ig-like, group 2; SMART: Bacterial Ig-like, group 2; SPTR: Bacterial group 2 Ig-like protein; IMG reference gene:2504824671; PFAM: Bacterial Ig-like domain (group 2) YP_004441883.1 InterPro IPR013766; PFAM: Thioredoxin domain; SPTR: Thioredoxin; IMG reference gene:2504824672 YP_004441884.1 InterPro IPR001584; KEGG: pgi:PG1420 ISPg5, transposase Orf2; PFAM: Integrase, catalytic core; SPTR: ISPg5, transposase Orf2; IMG reference gene:2504824673; PFAM: Integrase core domain YP_004441885.1 InterPro IPR002514; KEGG: pgi:PG1419 ISPg5, transposase Orf1; PFAM: Transposase IS3/IS911; SPTR: Transposase; IMG reference gene:2504824674; PFAM: Transposase YP_004441886.1 COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR005746:IPR013766; KEGG: pgn:PGN_0033 thioredoxin; PFAM: Thioredoxin domain; SPTR: Thioredoxin; TIGRFAM: Thioredoxin; IMG reference gene:2504824675; PFAM: Thioredoxin; TIGRFAM: thioredoxin YP_004441887.1 COGs: COG0587 DNA polymerase III alpha subunit; InterProIPR003141:IPR004805:IPR004013:IPR011708:IPR 004365; KEGG: pgn:PGN_0034 DNA polymerase III alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: DNA-directed DNA polymerase; SMART: Polymerase/histidinol phosphatase, N-terminal; SPTR: DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; IMG reference gene:2504824676; PFAM: Bacterial DNA polymerase III alpha subunit; PHP domain; TIGRFAM: DNA-directed DNA polymerase III (polc) YP_004441888.1 COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); InterPro IPR008881; KEGG: pdi:BDI_2397 FKBP-type peptidyl-prolyl cis-transisomerase; PFAM: Trigger factor, ribosome-binding, bacterial; SPTR: trigger factor; IMG reference gene:2504824677; PFAM: Bacterial trigger factor protein (TF) YP_004441889.1 KEGG: pgn:PGN_0759 hypothetical protein; SPTR: Acyltransferase family protein; IMG reference gene:2504824678 YP_004441890.1 COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; HAMAP: D-alanine--D-alanine ligase; InterPro IPR011127:IPR011095:IPR005905; KEGG: pgi:PG0729 D-alanyl-alanine synthetase A; PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; PRIAM: D-alanine--D-alanine ligase; SPTR: D-ala D-ala ligase N-terminal domain protein; IMG reference gene:2504824679; PFAM: D-ala D-ala ligase C-terminus; D-ala D-ala ligase N-terminus; TIGRFAM: D-alanine--D-alanine ligase YP_004441891.1 COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR002942:IPR006225:IPR006145; KEGG: pgn:PGN_0761 ribosomal large subunit pseudouridine synthase; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; SMART: RNA-binding S4; SPTR: ribosomal large subunit pseudouridine synthase D; TIGRFAM: Pseudouridine synthase, RluC/RluD; IMG reference gene:2504824680; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase, RluA family YP_004441892.1 COGs: COG2815 conserved hypothetical protein; InterPro IPR005543; KEGG: pgn:PGN_0762 hypothetical protein; PFAM: PASTA; SMART: PASTA; SPTR: PASTA domain protein; IMG reference gene:2504824681; PFAM: PASTA domain YP_004441893.1 KEGG: lby:Lbys_0995 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824682 YP_004441894.1 COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase; IMG reference gene:2504824683; PFAM: Transposase YP_004441895.1 InterPro IPR002559; KEGG: dal:Dalk_2552 transposase IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase, IS4 family; IMG reference gene:2504824684; PFAM: Transposase DDE domain YP_004441896.1 SPTR: lipoprotein; IMG reference gene:2504824685 YP_004441897.1 KEGG: pgi:PG0409 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824686 YP_004441898.1 COGs: COG0335 Ribosomal protein L19; HAMAP: Ribosomal protein L19; InterPro IPR001857; KEGG: pgn:PGN_0035 50S ribosomal protein L19; PFAM: Ribosomal protein L19; SPTR: Ribosomal protein L19; TIGRFAM: Ribosomal protein L19; IMG reference gene:2504824687; PFAM: Ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type YP_004441899.1 COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003869; KEGG: pdi:BDI_3615 nucleoside-diphosphate sugar epimerase/dehydrase; PFAM: Polysaccharide biosynthesis protein CapD-like; SPTR: Polysaccharide biosynthesis protein; IMG reference gene:2504824690; PFAM: Polysaccharide biosynthesis protein YP_004441900.1 COGs: COG4464 Capsular polysaccharide biosynthesis protein; InterPro IPR004013; KEGG: pgn:PGN_1525 probable capsular polysaccharide biosynthesis protein; PFAM: PHP, C-terminal; SPTR: PHP domain protein; IMG reference gene:2504824691 YP_004441901.1 COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR005702:IPR003856; KEGG: pgn:PGN_1524 hypothetical protein; PFAM: Lipopolysaccharide biosynthesis; PRIAM: Non-specific protein-tyrosine kinase; SPTR: Chain length determinant protein; TIGRFAM: Exopolysaccharide synthesis protein; IMG reference gene:2504824692; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family YP_004441902.1 COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715:IPR019554; KEGG: pgn:PGN_1523 polysaccharide export outer membrane protein; PFAM: Polysaccharide export protein; Soluble ligand binding domain; SPTR: Polysaccharide biosynthesis/export protein; IMG reference gene:2504824693; PFAM: Polysaccharide biosynthesis/export protein; SLBB domain YP_004441903.1 KEGG: dfe:Dfer_0060 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824694; PFAM: Polysaccharide pyruvyl transferase YP_004441904.1 COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: bvu:BVU_2944 transmembrane protein; PFAM: Polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein; IMG reference gene:2504824695 YP_004441905.1 SPTR: lipoprotein; IMG reference gene:2504824696 YP_004441906.1 IMG reference gene:2504824697 YP_004441907.1 IMG reference gene:2504824698 YP_004441908.1 COGs: COG3344 Retron-type reverse transcriptase; InterPro IPR000477:IPR013597; KEGG: smb:smi_1764 reverse transcriptase/maturase, group II introns; PFAM: RNA-directed DNA polymerase (reverse transcriptase); Group II intron, maturase-specific; SPTR: reverse transcriptase/maturase; IMG reference gene:2504824699; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain YP_004441909.1 COGs: COG0339 Zn-dependent oligopeptidase; InterPro IPR001567; KEGG: pgn:PGN_0788 peptidyl-dipeptidase; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; PRIAM: Peptidyl-dipeptidase Dcp; SPTR: Peptidyl-dipeptidase dcp; IMG reference gene:2504824700; PFAM: Peptidase family M3 YP_004441910.1 HAMAP: Exonuclease VII, small subunit; InterPro IPR003761; KEGG: pgn:PGN_0840 hypothetical protein; PFAM: Exonuclease VII, small subunit; SPTR: Hydrolase; IMG reference gene:2504824701; PFAM: Exonuclease VII small subunit YP_004441911.1 COGs: COG1052 Lactate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140; KEGG: pgi:PG2171 D-isomer specific 2-hydroxyacid dehydrogenase family protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; PRIAM: Glyoxylate reductase; SPTR: Glyoxylate reductase; IMG reference gene:2504824702; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004441912.1 COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR001678; KEGG: bvu:BVU_1954 tRNA and rRNA cytosine-C5-methylase; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; SPTR: NOL1/NOP2/sun family protein; IMG reference gene:2504824703; PFAM: NOL1/NOP2/sun family YP_004441913.1 COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130; KEGG: pgi:PG1226 peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; SPTR: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; IMG reference gene:2504824704; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YP_004441914.1 COGs: COG1284 conserved hypothetical protein; InterPro IPR003740:IPR019264; KEGG: pdi:BDI_2028 hypothetical protein; PFAM: Protein of unknown function DUF2179; Protein of unknown function DUF161; SPTR: uncharacterized protein; IMG reference gene:2504824705; PFAM: Uncharacterized BCR, YitT family COG1284; Uncharacterized protein conserved in bacteria (DUF2179) YP_004441915.1 InterPro IPR006683; KEGG: apr:Apre_1097 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase family protein; IMG reference gene:2504824706; PFAM: Thioesterase superfamily YP_004441916.1 COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR002482:IPR008258:IPR018392; KEGG: pgi:PG0139 membrane-bound lytic murein transglycosylase D, PFAM: Lytic transglycosylase-like, catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Transglycosylase SLT domain protein; IMG reference gene:2504824707; PFAM: Transglycosylase SLT domain; LysM domain YP_004441917.1 KEGG: pgn:PGN_0253 hypothetical protein; SPTR: Outer membrane insertion signal domain protein; IMG reference gene:2504824708 YP_004441918.1 COGs: COG1475 transcriptional regulator protein; InterPro IPR003115:IPR004437; KEGG: pgn:PGN_0254 ParB chromosome partitioning protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease; SPTR: stage 0 sporulation protein J; TIGRFAM: ParB-like partition protein; IMG reference gene:2504824709; PFAM: Helix-turn-helix; ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins YP_004441919.1 COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: pgn:PGN_0255 ParA chromosome partitioning protein; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: Sporulation initiation inhibitor protein Soj; IMG reference gene:2504824710; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004441920.1 IMG reference gene:2504824711 YP_004441921.1 COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: bvu:BVU_3995 small heat shock protein; PFAM: Heat shock protein Hsp20; SPTR: Hsp20/alpha crystallin family protein; IMG reference gene:2504824712; PFAM: Hsp20/alpha crystallin family YP_004441922.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_5639 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; IMG reference gene:2504824713; PFAM: ABC transporter YP_004441923.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: ppn:Palpr_2716 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; IMG reference gene:2504824714; PFAM: ABC transporter YP_004441924.1 COGs: COG1566 Multidrug resistance efflux pump; KEGG: bth:BT_0561 hypothetical protein; SPTR: lipoprotein; IMG reference gene:2504824715; PFAM: HlyD family secretion protein YP_004441925.1 COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003593:IPR003439; KEGG: pgi:PG1034 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; IMG reference gene:2504824716; PFAM: ABC transporter YP_004441926.1 COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR003453; KEGG: pgi:PG1033 hypothetical protein; PFAM: Protein of unknown function DUF140; SPTR: uncharacterized protein; IMG reference gene:2504824717; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein YP_004441927.1 KEGG: pgi:PG1835 lipoprotein; SPTR: lipoprotein; IMG reference gene:2504824719 YP_004441928.1 KEGG: hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824720 YP_004441929.1 KEGG: bth:BT_3626 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824721 YP_004441930.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: bth:BT_3627 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; IMG reference gene:2504824722; PFAM: ABC transporter YP_004441931.1 InterPro IPR005625; KEGG: bvu:BVU_2510 hypothetical protein; PFAM: PepSY-associated TM helix; SPTR: PepSY domain protein; IMG reference gene:2504824723 YP_004441932.1 KEGG: bth:BT_3629 hypothetical protein; SPTR: lipoprotein; IMG reference gene:2504824724 YP_004441933.1 SPTR: uncharacterized protein; IMG reference gene:2504824725 YP_004441934.1 KEGG: bvu:BVU_2508 hypothetical protein; SPTR: Conserved domain protein; IMG reference gene:2504824726 YP_004441935.1 KEGG: bfs:BF3067 lipoprotein; SPTR: lipoprotein; IMG reference gene:2504824727 YP_004441936.1 InterPro IPR012910:IPR000531; KEGG: bfs:BF3068 hypothetical protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug domain protein; IMG reference gene:2504824728; PFAM: TonB-dependent Receptor Plug Domain YP_004441937.1 KEGG: bth:BT_2319 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824729; PFAM: Protein of unknown function (DUF3575) YP_004441938.1 KEGG: pdi:BDI_0728 hypothetical protein; SPTR: lipoprotein; manually curated; IMG reference gene:2504824730 YP_004441939.1 KEGG: pdi:BDI_0729 hypothetical protein; SPTR: lipoprotein; IMG reference gene:2504824731 YP_004441940.1 IMG reference gene:2504824732 YP_004441941.1 KEGG: bth:BT_2316 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824733 YP_004441942.1 COGs: COG1970 Large-conductance mechanosensitive channel; HAMAP: Large-conductance mechanosensitive channel; InterPro IPR001185; KEGG: bfs:BF0886 large-conductance mechanosensitive channel; PFAM: Large-conductance mechanosensitive channel; SPTR: Large conductance mechanosensitive channel protein; TIGRFAM: Large-conductance mechanosensitive channel; IMG reference gene:2504824734; PFAM: Large-conductance mechanosensitive channel, MscL; TIGRFAM: large conductance mechanosensitive channel protein YP_004441943.1 COGs: COG1003 Glycine cleavage system protein P (pyridoxal-binding) C-terminal domain; InterPro IPR003437:IPR020580; KEGG: pgn:PGN_1094 glycine dehydrogenase; PFAM: Glycine cleavage system P-protein, N-terminal; SPTR: Glycine dehydrogenase; TIGRFAM: Glycine cleavage system P-protein; IMG reference gene:2504824735; PFAM: Glycine cleavage system P-protein; TIGRFAM: glycine dehydrogenase (decarboxylating) YP_004441944.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: pgn:PGN_1095 probable metallo-beta-lactamase; SPTR: Metallo-beta-lactamase domain protein; IMG reference gene:2504824736; PFAM: Metallo-beta-lactamase superfamily YP_004441945.1 COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division; HAMAP: rRNA small subunit methyltransferase G; InterPro IPR003682; KEGG: ppn:Palpr_0686 16S rRNA m(7)g-527 methyltransferase; PFAM: rRNA small subunit methyltransferase G; SPTR: 16S rRNA methyltransferase GidB; TIGRFAM: rRNA small subunit methyltransferase G; IMG reference gene:2504824737; PFAM: rRNA small subunit methyltransferase G; TIGRFAM: 16S rRNA (guanine(527)-N(7))-methyltransferase GidB YP_004441946.1 COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR003593:IPR017730:IPR004176:IPR003959:IPR 013093:IPR019489; KEGG: pgi:PG1118 ClpB protein; PFAM: ATPase associated with various cellular activities, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent chaperone protein ClpB; TIGRFAM: Chaperonin ClpB; IMG reference gene:2504824738; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB YP_004441947.1 InterPro IPR006665; KEGG: pap:PSPA7_1446 outer membrane protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA family protein; IMG reference gene:2504824739; PFAM: OmpA family YP_004441948.1 COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase; IMG reference gene:2504824741; PFAM: Transposase YP_004441949.1 KEGG: lby:Lbys_0995 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824742 YP_004441950.1 COGs: COG0358 DNA primase; InterProIPR002694:IPR006154:IPR006295:IPR013264:IPR 006171; KEGG: pgn:PGN_1751 DNA primase; PFAM: DNA primase, catalytic core, N-terminal; Zinc finger, CHC2-type; Toprim domain; SPTR: DNA primase; TIGRFAM: DNA primase, DnaG; IMG reference gene:2504824743; PFAM: Toprim domain; CHC2 zinc finger; DNA primase catalytic core, N-terminal domain; DnaB-helicase binding domain of primase; TIGRFAM: DNA primase, catalytic core YP_004441951.1 COGs: COG2812 DNA polymerase III gamma/tau subunits; KEGG: pgn:PGN_1015 DNA polymerase III delta prime subunit; SPTR: DNA polymerase III, delta' subunit; IMG reference gene:2504824744; TIGRFAM: DNA polymerase III, delta' subunit YP_004441952.1 COGs: COG3274 conserved hypothetical protein; KEGG: pgn:PGN_0003 hypothetical protein; SPTR: Conserved domain protein; IMG reference gene:2504824745; PFAM: Acyltransferase family YP_004441953.1 COGs: COG0307 Riboflavin synthase alpha chain; InterPro IPR001783; KEGG: bvu:BVU_2721 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein; PRIAM: Riboflavin synthase; SPTR: Riboflavin synthase, alpha subunit; TIGRFAM: Lumazine-binding protein; IMG reference gene:2504824746; PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit YP_004441954.1 COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: pgi:PG0734 nitroreductase family protein; PFAM: Nitroreductase-like; SPTR: Nitroreductase family protein; IMG reference gene:2504824747; PFAM: Nitroreductase family YP_004441955.1 COGs: COG4232 Thiol:disulfide interchange protein; InterPro IPR003834; KEGG: pdi:BDI_3793 thiol:disulfide interchange protein; PFAM: Cytochrome c assembly protein, transmembrane region; PRIAM: Protein-disulfide reductase; SPTR: Cytochrome C biogenesis protein transmembrane region; IMG reference gene:2504824748; PFAM: Cytochrome C biogenesis protein transmembrane region YP_004441956.1 COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145; KEGG: pgn:PGN_0410 probable RNA pseudouridylate synthase; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; SPTR: RNA pseudouridine synthase; IMG reference gene:2504824749; PFAM: RNA pseudouridylate synthase YP_004441957.1 KEGG: pgi:PG1706 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824750 YP_004441958.1 InterPro IPR007060; KEGG: pgn:PGN_0408 hypothetical protein; PFAM: Septum formation initiator; SPTR: Septum formation initiator; IMG reference gene:2504824751; PFAM: Septum formation initiator YP_004441959.1 KEGG: dly:Dehly_1718 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824752; PFAM: Protein of unknown function (DUF2807) YP_004441960.1 KEGG: pgn:PGN_1977 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824753 YP_004441961.1 COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA dimethylallyltransferase; InterPro IPR018022:IPR002627; KEGG: pgn:PGN_1450 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: tRNA dimethylallyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; IMG reference gene:2504824754; PFAM: IPP transferase; TIGRFAM: tRNA dimethylallyltransferase YP_004441962.1 COGs: COG0516 IMP dehydrogenase/GMP reductase; InterPro IPR001093:IPR000644; KEGG: pgn:PGN_1449 inosine 5-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core; PRIAM: IMP dehydrogenase; SPTR: inosine-5'-monophosphate dehydrogenase; IMG reference gene:2504824755; PFAM: CBS domain; IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase YP_004441963.1 KEGG: pgi:PG1218 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824756 YP_004441964.1 InterPro IPR006110; KEGG: pmz:HMPREF0659_A7126 hypothetical protein; PFAM: RNA polymerase Rpb6; SPTR: uncharacterized protein; IMG reference gene:2504824757; PFAM: RNA polymerase Rpb6 YP_004441965.1 COGs: COG4105 DNA uptake lipoprotein; InterPro IPR017689; KEGG: pgn:PGN_1354 hypothetical protein; SPTR: Outer membrane assembly lipoprotein YfiO; TIGRFAM: Outer membrane assembly lipoprotein YfiO; IMG reference gene:2504824758; TIGRFAM: outer membrane assembly lipoprotein YfiO YP_004441966.1 COGs: COG0462 Phosphoribosylpyrophosphate synthetase; InterPro IPR005946:IPR000836; KEGG: pgn:PGN_0149 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase; PRIAM: Ribose-phosphate diphosphokinase; SPTR: Ribose-phosphate diphosphokinase; TIGRFAM: Phosphoribosyl pyrophosphokinase; IMG reference gene:2504824759; PFAM: Phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase YP_004441967.1 IMG reference gene:2504824760 YP_004441968.1 KEGG: pgi:PG2130 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824761; PFAM: Protein of unknown function (DUF3575) YP_004441969.1 KEGG: pdi:BDI_2595 hypothetical protein; SPTR: exported protein; IMG reference gene:2504824762; PFAM: OmpA family YP_004441970.1 IMG reference gene:2504824763 YP_004441971.1 IMG reference gene:2504824764 YP_004441972.1 SPTR: uncharacterized protein; IMG reference gene:2504824765 YP_004441973.1 SPTR: uncharacterized protein; IMG reference gene:2504824766 YP_004441974.1 IMG reference gene:2504824767 YP_004441975.1 InterPro IPR000531; KEGG: bth:BT_3560 hypothetical protein; PFAM: TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; IMG reference gene:2504824769 YP_004441976.1 KEGG: extracellular nuclease; SPTR: uncharacterized protein; IMG reference gene:2504824770 YP_004441977.1 KEGG: fba:FIC_02376 hypothetical protein; SPTR: lipoprotein; IMG reference gene:2504824771 YP_004441978.1 COGs: COG1864 DNA/RNA endonuclease G NUC1; InterPro IPR020821:IPR001604; KEGG: bth:BT_3558 endonuclease; PFAM: DNA/RNA non-specific endonuclease; SMART: Extracellular Endonuclease, subunit A; SPTR: DNA/RNA non-specific endonuclease; IMG reference gene:2504824772; PFAM: DNA/RNA non-specific endonuclease YP_004441979.1 InterPro IPR001173; KEGG: pgi:PG0294 glycosyl transferase, group 2 family protein; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase, group 2 family protein; IMG reference gene:2504824773; PFAM: Glycosyl transferase family 2 YP_004441980.1 COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterProIPR011895:IPR002880:IPR019752:IPR019456:IPR 001450:IPR011766; KEGG: pgn:PGN_1418 pyruvate-flavodoxin oxidoreductase; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate/ketoisovalerate oxidoreductase; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: Pyruvate dehydrogenase (NADP(+)); SPTR: Pyruvate synthase; TIGRFAM: Pyruvate-flavodoxin oxidoreductase; IMG reference gene:2504824774; PFAM: domain; Domain of unknown function; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric YP_004441981.1 COGs: COG1373 ATPase (AAA+ superfamily); KEGG: pgn:PGN_1419 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824775 YP_004441982.1 IMG reference gene:2504824776 YP_004441983.1 COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: cpi:Cpin_2996 patatin; PFAM: Patatin; SPTR: Phospholipase, patatin family; IMG reference gene:2504824777; PFAM: Patatin-like phospholipase YP_004441984.1 COGs: COG0826 Collagenase and related protease; InterPro IPR001539; KEGG: pgi:PG1542 collagenase; PFAM: Peptidase U32; SPTR: Collagenase; IMG reference gene:2504824778; PFAM: Peptidase family U32 YP_004441985.1 COGs: COG0824 thioesterase; InterPro IPR006683; KEGG: pgn:PGN_0566 probable thioesterase protein; PFAM: Thioesterase superfamily; SPTR: Acyl-CoA thioester hydrolase, YbgC/YbaW family; IMG reference gene:2504824779; PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family YP_004441986.1 COGs: COG1502 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; KEGG: pgn:PGN_0466 cardiolipin synthetase; SPTR: Conserved domain protein; IMG reference gene:2504824780 YP_004441987.1 InterPro IPR007730; KEGG: pgi:PG0471 hypothetical protein; PFAM: Sporulation/cell division region, bacteria; SPTR: Sporulation and cell division repeat protein; IMG reference gene:2504824781 YP_004441988.1 COGs: COG1158 Transcription termination factor; InterProIPR011129:IPR003593:IPR004665:IPR011113:IPR 000194; KEGG: pgn:PGN_1630 transcription termination factor Rho; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, RNA-binding; SMART: Cold shock protein; ATPase, AAA+ type, core; SPTR: Transcription termination factor Rho; TIGRFAM: Transcription termination factor Rho; IMG reference gene:2504824782; PFAM: Rho termination factor, N-terminal domain; Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho YP_004441989.1 COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR001902:IPR011547:IPR002645; KEGG: pgn:PGN_0017 sulfate transporter permease; PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; SPTR: Sulfate permease; TIGRFAM: Sulphate anion transporter; IMG reference gene:2504824783; PFAM: Sulfate transporter family; STAS domain; TIGRFAM: anti-anti-sigma factor; high affinity sulphate transporter 1 YP_004441990.1 KEGG: zpr:ZPR_4443 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824784 YP_004441991.1 KEGG: fbc:FB2170_07324 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824785 YP_004441992.1 COGs: COG0820 Fe-S-cluster redox enzyme; HAMAP: Ribosomal RNA large subunit methyltransferase RlmN; InterPro IPR004383:IPR007197; KEGG: pdi:BDI_0185 ribosomal RNA large subunit methyltransferase N; PFAM: Radical SAM; SPTR: 23S rRNA m2A2503 methyltransferase; TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN; IMG reference gene:2504824786; PFAM: Radical SAM superfamily; TIGRFAM: 23S rRNA m2A2503 methyltransferase YP_004441993.1 COGs: COG0557 Exoribonuclease R; InterProIPR011805:IPR004476:IPR013223:IPR001900:IPR 003029; KEGG: pgn:PGN_0396 ribonuclease R; PFAM: Ribonuclease II/R; Ribonuclease B, OB region N-terminal; Ribosomal protein S1, RNA binding domain; PRIAM: Exoribonuclease II; SPTR: Ribonuclease R; TIGRFAM: Ribonuclease R, bacterial; Ribonuclease II/ribonuclease R, bacteria; IMG reference gene:2504824787; PFAM: RNB domain; Ribonuclease B OB domain; S1 RNA binding domain; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonucleases YP_004441994.1 COGs: COG1162 GTPase; HAMAP: ribosome biogenesis GTPase RsgA; InterPro IPR004881; KEGG: pgi:PG1900 ribosome-associated GTPase; PFAM: GTPase EngC; SPTR: ribosome biogenesis GTPase RsgA; TIGRFAM: GTPase EngC; IMG reference gene:2504824788; PFAM: Protein of unknown function, DUF258; TIGRFAM: ribosome small subunit-dependent GTPase A YP_004441995.1 COGs: COG0233 Ribosome recycling factor; HAMAP: Ribosome recycling factor, bacterial-like; InterPro IPR002661:IPR015998; KEGG: pdi:BDI_3376 ribosome recycling factor; PFAM: Ribosome recycling factor; SPTR: Ribosome recycling factor; TIGRFAM: Ribosome recycling factor; IMG reference gene:2504824789; PFAM: Ribosome recycling factor; TIGRFAM: ribosome recycling factor YP_004441996.1 COGs: COG0528 Uridylate kinase; InterPro IPR015963:IPR001048; KEGG: pdi:BDI_3371 uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; SPTR: UMP kinase; TIGRFAM: Uridylate kinase, bacteria; IMG reference gene:2504824790; PFAM: Amino acid kinase family; TIGRFAM: uridylate kinase YP_004441997.1 InterPro IPR002797; KEGG: pgn:PGN_1235 membrane protein PorS; PFAM: Polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein; IMG reference gene:2504824791 YP_004441998.1 COGs: COG0575 CDP-diglyceride synthetase; InterPro IPR000374; KEGG: bfr:BF0773 phosphatidate cytidylyltransferase; PFAM: Phosphatidate cytidylyltransferase; SPTR: Phosphatidate cytidylyltransferase; IMG reference gene:2504824792; PFAM: Cytidylyltransferase family YP_004441999.1 COGs: COG0465 ATP-dependent Zn protease; InterProIPR003593:IPR005936:IPR011546:IPR003959:IPR 000642; KEGG: pgi:PG0047 cell division protein FtsH, PFAM: ATPase, AAA-type, core; Peptidase M41, FtsH extracellular; Peptidase M41; PRIAM: Microtubule-severing ATPase; SMART: ATPase, AAA+ type, core; SPTR: Cell division protease FtsH; TIGRFAM: Peptidase M41, FtsH; IMG reference gene:2504824793; PFAM: Peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH YP_004442000.1 COGs: COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; InterPro IPR005661; KEGG: pdi:BDI_0160 oxaloacetate decarboxylase beta chain; PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; PRIAM: Oxaloacetate decarboxylase; SPTR: Oxaloacetate decarboxylase beta chain; TIGRFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; IMG reference gene:2504824794; PFAM: subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit YP_004442001.1 KEGG: pgi:PG1611 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824795 YP_004442002.1 InterPro IPR000200; KEGG: pgi:PG1427 thiol protease/hemagglutinin PrtT precursor, PFAM: Peptidase C10, streptopain; PRIAM: Streptopain; SPTR: Peptidase C10 family; IMG reference gene:2504824796; PFAM: Peptidase C10 family YP_004442003.1 KEGG: tva:TVAG_495790 surface antigen BspA-like; SPTR: uncharacterized protein; IMG reference gene:2504824797 YP_004442004.1 COGs: COG4886 Leucine-rich repeat (LRR) protein; InterPro IPR001611; KEGG: tde:TDE0593 internalin-related protein; PFAM: Leucine-rich repeat; SPTR: Leucine rich repeat protein; IMG reference gene:2504824798 YP_004442005.1 KEGG: pgn:PGN_1416 probable lysyl endopeptidase precursor; SPTR: Extracellular protease family protein; IMG reference gene:2504824799 YP_004442006.1 IMG reference gene:2504824800 YP_004442007.1 COGs: COG3344 Retron-type reverse transcriptase; InterPro IPR000477:IPR013597; KEGG: smb:smi_1764 reverse transcriptase/maturase, group II introns; PFAM: RNA-directed DNA polymerase (reverse transcriptase); Group II intron, maturase-specific; SPTR: reverse transcriptase/maturase; IMG reference gene:2504824801; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain YP_004442008.1 COGs: COG1649 conserved hypothetical protein; InterPro IPR003790; KEGG: pgi:PG0476 YngK protein; PFAM: Protein of unknown function DUF187; SPTR: uncharacterized protein; IMG reference gene:2504824802; PFAM: Uncharacterised BCR, COG1649 YP_004442009.1 COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR006638:IPR004559:IPR007197:IPR010723; KEGG: pru:PRU_0612 oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM; HemN, C-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; IMG reference gene:2504824803; PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase YP_004442010.1 COGs: COG0716 Flavodoxins; InterPro IPR010086:IPR008254; KEGG: pgn:PGN_1791 flavodoxin FldA; PFAM: Flavodoxin/nitric oxide synthase; SPTR: Flavodoxin; TIGRFAM: Flavodoxin, long chain; IMG reference gene:2504824804; PFAM: Flavodoxin; TIGRFAM: flavodoxin, long chain YP_004442011.1 InterPro IPR018594; KEGG: bfs:BF2690 hypothetical protein; PFAM: Domain of unknown function DUF2023; SPTR: uncharacterized protein; IMG reference gene:2504824805; PFAM: Protein of unknown function (DUF2023) YP_004442012.1 COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: pgi:PG1048 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; SPTR: N-acetylmuramoyl-L-alanine amidase; IMG reference gene:2504824807; PFAM: N-acetylmuramoyl-L-alanine amidase YP_004442013.1 COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399; KEGG: pgn:PGN_1304 hypothetical protein; PFAM: Mammalian cell entry related; SPTR: uncharacterized protein; IMG reference gene:2504824808; PFAM: mce related protein YP_004442014.1 SPTR: uncharacterized protein; IMG reference gene:2504824809 YP_004442015.1 COGs: COG2059 Chromate transport protein ChrA; InterPro IPR003370; KEGG: pgn:PGN_1672 probable chromate transport protein; PFAM: Chromate transporter region; SPTR: Chromate transport protein; IMG reference gene:2504824810; PFAM: Chromate transporter YP_004442016.1 COGs: COG2059 Chromate transport protein ChrA; InterPro IPR003370; KEGG: pgn:PGN_1671 probable chromate transport protein; PFAM: Chromate transporter region; SPTR: Chromate transport protein; IMG reference gene:2504824811; PFAM: Chromate transporter; TIGRFAM: sodium--glutamate symport carrier (gltS) YP_004442017.1 COGs: COG0621 2-methylthioadenine synthetase; InterProIPR006638:IPR005839:IPR006467:IPR013848:IPR 007197; KEGG: pgn:PGN_2085 Fe-S oxidoreductase; PFAM: Methylthiotransferase, N-terminal; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: tRNA methylthiotransferase YqeV; TIGRFAM: MiaB-like tRNA modifying enzyme; Methylthiotransferase; IMG reference gene:2504824812; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme; radical SAM methylthiotransferase, MiaB/RimO family YP_004442018.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: pgn:PGN_2087 glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase, group 2 family protein; IMG reference gene:2504824813; PFAM: Glycosyl transferase family 2 YP_004442019.1 COGs: COG3169 conserved hypothetical protein; InterPro IPR007437; KEGG: hypothetical protein; PFAM: Protein of unknown function DUF486; SPTR: uncharacterized protein; IMG reference gene:2504824814; PFAM: Protein of unknown function, DUF486 YP_004442020.1 COGs: COG0386 Glutathione peroxidase; InterPro IPR000889; KEGG: pru:PRU_2788 glutathione peroxidase family protein; PFAM: Glutathione peroxidase; PRIAM: Peroxiredoxin; SPTR: Peroxiredoxin HYR1; IMG reference gene:2504824815; PFAM: Glutathione peroxidase YP_004442021.1 COGs: COG1585 Membrane protein implicated in regulation of membrane protease activity; InterPro IPR002810; KEGG: pgn:PGN_1125 hypothetical protein; PFAM: Nodulation efficiency, NfeD; SPTR: Nodulation efficiency protein D; IMG reference gene:2504824816; PFAM: NfeD-like YP_004442022.1 COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: pgn:PGN_1124 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: SPFH/Band 7/PHB domain protein; IMG reference gene:2504824817; PFAM: SPFH domain / Band 7 family YP_004442023.1 COGs: COG2184 Protein involved in cell division; InterPro IPR003812; KEGG: pph:Ppha_1247 filamentation induced by cAMP protein Fic; PFAM: Filamentation induced by cAMP/death on curing, related; SPTR: Fic family protein; IMG reference gene:2504824818; PFAM: Fic/DOC family YP_004442024.1 COGs: COG1203 helicase; InterPro IPR006483:IPR006474:IPR014001:IPR011545; KEGG: nhl:Nhal_1941 CRISPR-associated helicase Cas3; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; SMART: DEAD-like helicase, N-terminal; SPTR: CRISPR-associated endonuclease Cas3-HD; TIGRFAM: CRISPR-associated HD domain; Helicase Cas3, CRISPR-associated, core; IMG reference gene:2504824819; PFAM: HD domain; DEAD/DEAH box helicase; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated endonuclease Cas3-HD YP_004442025.1 InterPro IPR013422:IPR010155; KEGG: pvi:Cvib_1301 CRISPR-associated RAMP Csd5d family protein; PFAM: CRISPR-associated protein, Cas5d-type; SPTR: CRISPR-associated protein Cas5, dvulg subtype; TIGRFAM: CRISPR-associated protein, Cas5d-type; CRISPR-associated protein Cas5; IMG reference gene:2504824820; PFAM: CRISPR-associated protein (Cas_Cas5); TIGRFAM: CRISPR-associated protein Cas5, subtype I-C/DVULG; CRISPR-associated protein Cas5, N-terminal domain YP_004442026.1 InterPro IPR010144; KEGG: cte:CT1133 hypothetical protein; PFAM: CRISPR-associated protein, Csd1-type; SPTR: CRISPR-associated protein, Csd1 family; TIGRFAM: CRISPR-associated protein, Csd1-type; IMG reference gene:2504824821; PFAM: CRISPR-associated protein (Cas_Csd1); TIGRFAM: CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG YP_004442027.1 COGs: COG3649 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR006482:IPR013418; KEGG: Csd2 family CRISPR-associated protein; PFAM: CRISPR-associated protein TM1801; SPTR: CRISPR-associated protein, Csd2 family; TIGRFAM: CRISPR-associated protein Csd2; CRISPR-associated protein TM1801; IMG reference gene:2504824822; PFAM: Family of unknown function (DUF694); TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG YP_004442028.1 COGs: COG1468 RecB family exonuclease; InterPro IPR013343; KEGG: pdi:BDI_1182 RecB family exonuclease; PFAM: CRISPR-associated protein Cas4; SPTR: CRISPR-associated protein Cas4; TIGRFAM: CRISPR-associated protein Cas4; IMG reference gene:2504824823; PFAM: Domain of unknown function DUF83; TIGRFAM: CRISPR-associated protein Cas4 YP_004442029.1 COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR019856:IPR002729; KEGG: CRISPR-associated protein, Cas1 family; PFAM: CRISPR-associated protein Cas1; SPTR: CRISPR-associated endonuclease Cas1, DVULG subtype; TIGRFAM: CRISPR-associated protein Cas1, DVULG subtype; CRISPR-associated protein Cas1; IMG reference gene:2504824824; PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated endonuclease Cas1, subtype I-C/DVULG; CRISPR-associated endonuclease Cas1 YP_004442030.1 COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR003799; KEGG: Cas2 family CRISPR-associated protein; SPTR: CRISPR-associated protein Cas2; TIGRFAM: Protein of unknown function DUF196; IMG reference gene:2504824825; PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated endoribonuclease Cas2 YP_004442031.1 InterPro IPR002797; KEGG: apa:APP7_1475 O-antigen transporter; PFAM: Polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein; IMG reference gene:2504824826; PFAM: Polysaccharide biosynthesis protein YP_004442032.1 COGs: COG0215 Cysteinyl-tRNA synthetase; InterPro IPR002308:IPR015803:IPR015273; KEGG: pgi:PG1878 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia, N-terminal; Cysteinyl-tRNA synthetase, class Ia, DALR; PRIAM: Cysteine--tRNA ligase; SPTR: Cysteine--tRNA ligase; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; IMG reference gene:2504824827; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase YP_004442033.1 COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: pgn:PGN_1807 glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase, group 2 family protein; IMG reference gene:2504824828; PFAM: Glycosyl transferase family 2 YP_004442034.1 InterPro IPR018580; KEGG: pgi:PG2022 hypothetical protein; PFAM: Protein of unknown function, membrane YfhO; SPTR: membrane protein; IMG reference gene:2504824829; PFAM: Bacterial membrane protein YfhO YP_004442035.1 InterPro IPR019734:IPR013105; KEGG: pgn:PGN_1323 TPR domain protein; PFAM: Tetratricopeptide TPR2; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide repeat protein; IMG reference gene:2504824830; PFAM: Tetratricopeptide repeat YP_004442036.1 COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: bth:BT_4704 O-succinylbenzoic acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase; SPTR: O-succinylbenzoic acid--CoA ligase family protein; IMG reference gene:2504824831; PFAM: AMP-binding enzyme YP_004442037.1 COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013342; KEGG: bth:BT_4703 chloromuconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; SPTR: o-succinylbenzoate synthase; IMG reference gene:2504824832; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; TIGRFAM: o-succinylbenzoate synthase YP_004442038.1 COGs: COG0447 Dihydroxynaphthoic acid synthase; InterPro IPR010198:IPR001753; KEGG: bfs:BF1303 naphthoate synthase; PFAM: Crotonase, core; PRIAM: Naphthoate synthase; SPTR: Naphthoate synthase; TIGRFAM: Naphthoate synthase; IMG reference gene:2504824833; PFAM: Enoyl-CoA hydratase/isomerase family; TIGRFAM: naphthoate synthase (dihydroxynaphthoic acid synthetase) YP_004442039.1 COGs: COG1165 2-succinyl-6-hydroxy-2 4-cyclohexadiene-1-carboxylate synthase; HAMAP: Menaquinone biosynthesis protein MenD; InterPro IPR004433:IPR012001; KEGG: pdi:BDI_1136 2-oxoglutarate decarboxylase and 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; PRIAM:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex ene-1-carboxylic-acidsynthase; SPTR:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexe ne-1-carboxylic-acidsynthase; TIGRFAM: Menaquinone biosynthesis protein MenD; IMG reference gene:2504824834; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylic-acid synthase YP_004442040.1 COGs: COG1169 Isochorismate synthase; InterPro IPR004561:IPR015890; KEGG: bth:BT_4700 isochorismate synthase EntC; PFAM: Chorismate binding, C-terminal; SPTR: Isochorismate synthase; TIGRFAM: Isochorismate synthase; manually curated; IMG reference gene:2504824835; PFAM: chorismate binding enzyme; TIGRFAM: isochorismate synthases YP_004442041.1 COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; InterPro IPR007685:IPR004095; KEGG: pgn:PGN_0465 GTP pyrophosphokinase; PFAM: RelA/SpoT; TGS; PRIAM: GTP diphosphokinase; SPTR: RelA/SpoT family protein; IMG reference gene:2504824836; PFAM: TGS domain; Region found in RelA / SpoT proteins; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family YP_004442042.1 KEGG: pgn:PGN_1052 hypothetical protein; SPTR: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase; IMG reference gene:2504824837; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YP_004442043.1 COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006218:IPR020822; KEGG: dsa:Desal_0806 DAHP synthetase I/KdsA; PFAM: DAHP synthetase I/KDSA; Chorismate mutase, type II; PRIAM: 3-deoxy-7-phosphoheptulonate synthase; SPTR: Chorismate mutase; IMG reference gene:2504824838; PFAM: Chorismate mutase type II; DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase YP_004442044.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: pgn:PGN_0448 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; IMG reference gene:2504824839; PFAM: ABC transporter YP_004442045.1 COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: pgn:PGN_0447 ABC transporter permease protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: Efflux ABC transporter, permease protein; IMG reference gene:2504824840; PFAM: Predicted permease YP_004442046.1 COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: pgn:PGN_0446 ABC transporter ATP-binding protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: Efflux ABC transporter, permease protein; IMG reference gene:2504824841; PFAM: Predicted permease YP_004442047.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: pgn:PGN_0445 membrane fusion efflux protein; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; IMG reference gene:2504824842; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_004442048.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: pgn:PGN_0444 probable outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; IMG reference gene:2504824843; PFAM: Outer membrane efflux protein YP_004442049.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: pgi:PG1010 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; IMG reference gene:2504824844; PFAM: ABC transporter YP_004442050.1 SPTR: membrane protein; IMG reference gene:2504824845 YP_004442051.1 COGs: COG1725 transcriptional regulator protein; InterPro IPR000524; KEGG: pdi:BDI_1103 transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; SPTR: Transcriptional regulator, GntR family; IMG reference gene:2504824846; PFAM: Bacterial regulatory proteins, gntR family YP_004442052.1 COGs: COG1282 NAD/NADP transhydrogenase beta subunit; InterPro IPR004003; KEGG: pgn:PGN_1122 NADPH-NAD transhydrogenase beta subunit; PFAM: NAD(P) transhydrogenase, beta subunit; PRIAM: NAD(P)(+) transhydrogenase (AB-specific); SPTR: NAD(P) transhydrogenase beta subunit; IMG reference gene:2504824847; PFAM: NAD(P) transhydrogenase beta subunit YP_004442053.1 COGs: COG3288 NAD/NADP transhydrogenase alpha subunit; KEGG: pgn:PGN_1121 probable NADPH-NAD transhydrogenase alpha subunit; SPTR: NAD(P)(+) transhydrogenase (B-specific), subunit PntAB; IMG reference gene:2504824848 YP_004442054.1 COGs: COG3288 NAD/NADP transhydrogenase alpha subunit; InterPro IPR007886:IPR007698; KEGG: pgn:PGN_1120 NADPH-NAD transhydrogenase; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal; PRIAM: NAD(P)(+) transhydrogenase (AB-specific); SPTR: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit; IMG reference gene:2504824849; PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: NAD(P) transhydrogenase, alpha subunit; alanine dehydrogenase YP_004442055.1 COGs: COG1866 Phosphoenolpyruvate carboxykinase (ATP); HAMAP: Phosphoenolpyruvate carboxykinase [ATP]; InterPro IPR001272; KEGG: pgi:PG1676 phosphoenolpyruvate carboxykinase; PFAM: Phosphoenolpyruvate carboxykinase, ATP-utilising; SPTR: Phosphoenolpyruvate carboxykinase (ATP); TIGRFAM: Phosphoenolpyruvate carboxykinase, ATP-utilising; IMG reference gene:2504824850; PFAM: Phosphoenolpyruvate carboxykinase; TIGRFAM: phosphoenolpyruvate carboxykinase (ATP) YP_004442056.1 KEGG: bfs:BF2535 hypothetical protein; SPTR: membrane protein; IMG reference gene:2504824851 YP_004442057.1 COGs: COG3610 conserved hypothetical protein; KEGG: ppn:Palpr_1462 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824852 YP_004442058.1 COGs: COG2966 conserved hypothetical protein; InterPro IPR010619; KEGG: bth:BT_0975 integral membrane protein; PFAM: Protein of unknown function DUF1212; SPTR: uncharacterized protein; IMG reference gene:2504824853; PFAM: Protein of unknown function (DUF1212) YP_004442059.1 COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; KEGG: pmz:HMPREF0659_A7268 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824854; PFAM: Ferric uptake regulator family YP_004442060.1 COGs: COG0443 Molecular chaperone; HAMAP: Chaperone DnaK; InterPro IPR012725:IPR013126; KEGG: pgi:PG1208 molecular chaperone DnaK; PFAM: Heat shock protein 70; SPTR: Chaperone protein DnaK; TIGRFAM: Chaperone DnaK; IMG reference gene:2504824855; PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK YP_004442061.1 InterPro IPR012910:IPR000531; KEGG: pgi:PG0534 hypothetical protein; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; IMG reference gene:2504824856; PFAM: TonB-dependent Receptor Plug Domain YP_004442062.1 COGs: COG2217 Cation transport ATPase; InterProIPR006404:IPR006416:IPR001757:IPR008250:IPR 005834; KEGG: pru:PRU_0260 cadmium-exporting ATPase; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; PRIAM: Cadmium-exporting ATPase; SPTR: Cadmium-exporting ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; IMG reference gene:2504824857; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase YP_004442063.1 InterPro IPR001584; KEGG: pgi:PG1420 ISPg5, transposase Orf2; PFAM: Integrase, catalytic core; SPTR: ISPg5, transposase Orf2; IMG reference gene:2504824858; PFAM: Integrase core domain YP_004442064.1 InterPro IPR002514; KEGG: nth:Nther_1507 transposase IS3/IS911 family protein; PFAM: Transposase IS3/IS911; SPTR: Transposase; IMG reference gene:2504824859; PFAM: Transposase YP_004442065.1 COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537; KEGG: pru:PRU_1405 prenyltransferase, UbiA family; PFAM: UbiA prenyltransferase; SPTR: Phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase family protein; IMG reference gene:2504824860; PFAM: UbiA prenyltransferase family YP_004442066.1 COGs: COG0560 Phosphoserine phosphatase; InterPro IPR006385; KEGG: pgn:PGN_1464 probable HAD-superfamily subfamily IB hydrolase; SPTR: HAD hydrolase, family IB; TIGRFAM: HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial; IMG reference gene:2504824861; TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like YP_004442067.1 KEGG: pgi:PG1391 hypothetical protein; SPTR: membrane protein; IMG reference gene:2504824862 YP_004442068.1 InterPro IPR018931; KEGG: gfo:GFO_1810 hypothetical protein; PFAM: Domain of unknown function DUF2520; SPTR: uncharacterized protein; IMG reference gene:2504824863; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Domain of unknown function (DUF2520) YP_004442069.1 COGs: COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; HAMAP: Maf-like protein; InterPro IPR003697; KEGG: pru:PRU_1205 maf protein; PFAM: Maf-like protein; SPTR: Septum formation protein Maf; TIGRFAM: Maf-like protein; IMG reference gene:2504824864; PFAM: Maf-like protein; TIGRFAM: MAF protein YP_004442070.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: pdi:BDI_0026 nucleoside-diphosphate-sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD dependent epimerase/dehydratase family protein; IMG reference gene:2504824865; PFAM: NAD dependent epimerase/dehydratase family YP_004442071.1 InterPro IPR007886; KEGG: fps:FP0481 monofunctional lysine-ketoglutarate reductase; PFAM: Alanine dehydrogenase/PNT, N-terminal; PRIAM: Saccharopine dehydrogenase (NADP(+), L-lysine-forming); SPTR: monofunctional lysine-ketoglutarate reductase; IMG reference gene:2504824866; PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain YP_004442072.1 KEGG: glycosyltransferase; SPTR: WemB; IMG reference gene:2504824867 YP_004442073.1 COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: bfr:BF2582 capsular polysaccharide transporter; PFAM: Polysaccharide biosynthesis protein; SPTR: uncharacterized protein; IMG reference gene:2504824868; PFAM: Polysaccharide biosynthesis protein YP_004442074.1 SPTR: Predicted protein; IMG reference gene:2504824869 YP_004442075.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: ssp:SSP0065 glycosyl transferase; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase; IMG reference gene:2504824870; PFAM: Glycosyl transferases group 1 YP_004442076.1 COGs: COG1004 UDP-glucose 6-dehydrogenase; InterPro IPR017476:IPR001732:IPR014026:IPR014027; KEGG: pdi:BDI_2215 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: UDP-glucose 6-dehydrogenase; TIGRFAM: Nucleotide sugar dehydrogenase; IMG reference gene:2504824871; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase YP_004442077.1 COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: plu:plu4806 WblJ protein; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase, group 2 family protein; IMG reference gene:2504824872; PFAM: Glycosyl transferase family 2 YP_004442078.1 COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: sugar transferase; PFAM: Bacterial sugar transferase; SPTR: Bacterial sugar transferase; IMG reference gene:2504824873; PFAM: Bacterial sugar transferase YP_004442079.1 COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: bfr:BF0827 aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: perosamine synthetase; IMG reference gene:2504824874; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family YP_004442080.1 KEGG: ana:alr4505 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824875 YP_004442081.1 COGs: COG3950 ATP-binding protein involved in virulence; KEGG: vpa:VPA0800 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824876 YP_004442082.1 InterPro IPR002711; KEGG: vsa:VSAL_II0742 HNH endonuclease; PFAM: HNH endonuclease; SPTR: TIGR02646 family protein; IMG reference gene:2504824877; TIGRFAM: TIGR02646 family protein YP_004442083.1 COGs: COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); HAMAP: Translation elongation factor P; InterPro IPR011768:IPR013185:IPR001059:IPR015365; KEGG: pgn:PGN_1405 elongation factor P; PFAM: Elongation factor P, C-terminal; Translation elongation factor, KOW-like; Translation elongation factor P/YeiP, central; SPTR: Translation elongation factor P; TIGRFAM: Translation elongation factor P; IMG reference gene:2504824878; PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P YP_004442084.1 COGs: COG1640 4-alpha-glucanotransferase; InterPro IPR003385; KEGG: bth:BT_2146 4-alpha-glucanotransferase; PFAM: Glycoside hydrolase, family 77; PRIAM: 4-alpha-glucanotransferase; SPTR: 4-alpha-glucanotransferase; IMG reference gene:2504824879; PFAM: 4-alpha-glucanotransferase YP_004442085.1 KEGG: pgn:PGN_1834 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824880 YP_004442086.1 IMG reference gene:2504824881 YP_004442087.1 COGs: COG0012 GTPase probable translation factor; InterPro IPR004396:IPR002917:IPR013029; KEGG: pdi:BDI_2987 GTP-dependent nucleic acid-binding protein EngD; PFAM: Protein of unknown function DUF933; GTP-binding protein, HSR1-related; SPTR: GTP-binding protein YchF; TIGRFAM: Conserved hypothetical protein CHP00092; IMG reference gene:2504824882; PFAM: GTPase of unknown function; Protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF YP_004442088.1 COGs: COG0519 GMP synthase PP-ATPase domain/subunit; HAMAP: GMP synthase [glutamine-hydrolyzing]; InterPro IPR004739:IPR001674:IPR000991:IPR018318; KEGG: pgi:PG0589 GMP synthase; PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; tRNA methyl transferase-like; PRIAM: GMP synthase (glutamine-hydrolyzing); SPTR: GMP synthase (Glutamine-hydrolyzing), C-terminal domain protein; TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; IMG reference gene:2504824883; PFAM: Glutamine amidotransferase class-I; GMP synthase C terminal domain; tRNA methyl transferase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit YP_004442089.1 COGs: COG0413 Ketopantoate hydroxymethyltransferase; HAMAP: Ketopantoate hydroxymethyltransferase; InterPro IPR003700; KEGG: pdi:BDI_0812 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; PRIAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; SPTR: 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: Ketopantoate hydroxymethyltransferase; IMG reference gene:2504824884; PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_004442090.1 COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR002125; KEGG: pgn:PGN_0769 cytosine/adenosine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR: Cytidine and deoxycytidylate deaminase zinc-binding region; IMG reference gene:2504824885; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region YP_004442091.1 InterPro IPR000866; KEGG: pgn:PGN_1181 probable thiol:disulfide oxidoreductase; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Antioxidant, AhpC/TSA family; IMG reference gene:2504824886; PFAM: AhpC/TSA family YP_004442092.1 COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; HAMAP: NAD-dependent deacetylase; InterPro IPR003000; KEGG: pgn:PGN_0004 NAD-dependent deacetylase; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2; SPTR: NAD-dependent deacetylase; IMG reference gene:2504824887; PFAM: Sir2 family YP_004442093.1 COGs: COG0164 Ribonuclease HII; InterPro IPR001352; KEGG: pgn:PGN_0767 ribonuclease HII; PFAM: Ribonuclease HII/HIII; PRIAM: Ribonuclease H; SPTR: Ribonuclease HII; IMG reference gene:2504824888; PFAM: Ribonuclease HII YP_004442094.1 COGs: COG0520 Selenocysteine lyase; InterPro IPR010970:IPR000192; KEGG: ppn:Palpr_1247 cysteine desulfurase, sufs subfamily; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Cysteine desulfurase; SPTR: Cysteine desulfurase, SufS family; TIGRFAM: Cysteine desulfurase, SufS; IMG reference gene:2504824889; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufS subfamily YP_004442095.1 COGs: COG1575 1 4-dihydroxy-2-naphthoate octaprenyltransferase; InterPro IPR004657:IPR000537; KEGG: pgi:PG2187 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; SPTR: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; IMG reference gene:2504824890; PFAM: UbiA prenyltransferase family; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_004442096.1 COGs: COG0527 Aspartokinase; InterPro IPR001341:IPR001048; KEGG: pgi:PG2189 aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; SPTR: Amino acid kinase family; TIGRFAM: aspartate kinase region; IMG reference gene:2504824891; PFAM: Amino acid kinase family; TIGRFAM: aspartate kinase YP_004442097.1 COGs: COG2884 ATPase involved in cell division; InterPro IPR003593:IPR003439; KEGG: pgn:PGN_0097 cell-division ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; IMG reference gene:2504824892; PFAM: ABC transporter YP_004442098.1 COGs: COG2249 NADPH-quinone reductase (modulator of drug activity B); InterPro IPR003680; KEGG: pgn:PGN_1749 probable NADPH-quinone reductase; PFAM: Flavodoxin-like fold; SPTR: Flavodoxin-like protein; IMG reference gene:2504824893; PFAM: Flavodoxin-like fold YP_004442099.1 KEGG: pgi:PG2106 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824894 YP_004442100.1 COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: nitroreductase; PFAM: Nitroreductase-like; SPTR: Nitroreductase family protein; IMG reference gene:2504824895; PFAM: Nitroreductase family YP_004442101.1 COGs: COG2189 adenine specific DNA methylase Mod; InterPro IPR002941; KEGG: bfs:BF1120 modification enzyme of type III restriction-modification system; PFAM: DNA methylase N-4/N-6; SPTR: DNA (Cytosine-5-)-methyltransferase; IMG reference gene:2504824896; PFAM: DNA methylase YP_004442102.1 COGs: COG3587 Restriction endonuclease; InterPro IPR014001:IPR006935; KEGG: bfs:BF1122 restriction enzyme of type III restriction-modification system; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; PRIAM: Type III site-specific deoxyribonuclease; SMART: DEAD-like helicase, N-terminal; SPTR: Type III restriction enzyme, res subunit; IMG reference gene:2504824897; PFAM: Type III restriction enzyme, res subunit YP_004442103.1 KEGG: bfs:BF1118 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824898 YP_004442104.1 KEGG: bfs:BF2756 lipoprotein; SPTR: uncharacterized protein; IMG reference gene:2504824899; PFAM: Protein of unknown function (DUF2874) YP_004442105.1 SPTR: uncharacterized protein; IMG reference gene:2504824900 YP_004442106.1 COGs: COG0476 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 2; InterPro IPR000594:IPR007901; KEGG: pgi:PG0446 ThiF protein; PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; SPTR: Molybdenum cofactor synthesis protein 3; IMG reference gene:2504824901; PFAM: MoeZ/MoeB domain; ThiF family YP_004442107.1 COGs: COG1060 Thiamine biosynthesis protein ThiH; InterPro IPR012726:IPR007197:IPR010722; KEGG: chu:CHU_0244 thiamine biosynthesis protein; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; SPTR: Thiazole biosynthesis protein ThiH; TIGRFAM: Thiazole biosynthesis ThiH; IMG reference gene:2504824902; PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: thiazole biosynthesis protein ThiH YP_004442108.1 COGs: COG2022 Uncharacterized protein of thiazole biosynthesis; HAMAP: Thiazole biosynthesis; InterPro IPR008867; KEGG: sli:Slin_6574 thiazole biosynthesis family protein; PFAM: Thiazole biosynthesis; SPTR: Thiazole synthase; IMG reference gene:2504824903; PFAM: Thiazole biosynthesis protein ThiG YP_004442109.1 COGs: COG0352 Thiamine monophosphate synthase; HAMAP: Thiamine-phosphate pyrophosphorylase; InterPro IPR003733:IPR013749; KEGG: pgi:PG2109 thiamine-phosphate pyrophosphorylase; PFAM: Phosphomethylpyrimidine kinase type-1; Thiamine monophosphate synthase; SPTR: thiamine-phosphate diphosphorylase; TIGRFAM: Thiamine monophosphate synthase; IMG reference gene:2504824904; PFAM: Phosphomethylpyrimidine kinase; Thiamine monophosphate synthase/TENI; TIGRFAM: phosphomethylpyrimidine kinase; thiamine-phosphate pyrophosphorylase YP_004442110.1 COGs: COG0422 Thiamine biosynthesis protein ThiC; HAMAP: Thiamine biosynthesis protein ThiC; InterPro IPR002817; KEGG: pgi:PG2110 thiamine biosynthesis protein ThiC; PFAM: Thiamine biosynthesis protein ThiC; SPTR: Thiamine biosynthesis protein ThiC; TIGRFAM: Thiamine biosynthesis protein ThiC; IMG reference gene:2504824905; PFAM: ThiC family; TIGRFAM: thiamine biosynthesis protein ThiC YP_004442111.1 InterPro IPR010035:IPR003749; KEGG: sro:Sros_2782 thiamine biosynthesis protein ThiS; PFAM: ThiamineS; SPTR: Thiamine biosynthesis protein ThiS; TIGRFAM: ThiS, thiamine-biosynthesis; IMG reference gene:2504824906; PFAM: ThiS family; TIGRFAM: thiamine biosynthesis protein ThiS YP_004442112.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: lby:Lbys_3121 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Heavy metal efflux pump, CzcA family; IMG reference gene:2504824907; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family YP_004442113.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: fjo:Fjoh_1267 RND family efflux transporter MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; IMG reference gene:2504824908; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_004442114.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: cpi:Cpin_0610 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; IMG reference gene:2504824909; PFAM: Outer membrane efflux protein YP_004442115.1 InterPro IPR001647; KEGG: cpi:Cpin_1142 transcriptional regulator, TetR family; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; IMG reference gene:2504824910; PFAM: Bacterial regulatory proteins, tetR family YP_004442116.1 KEGG: cat:CA2559_02640 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824911 YP_004442117.1 KEGG: coc:Coch_2162 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824912 YP_004442118.1 InterPro IPR014985; KEGG: bth:BT_3317 hypothetical protein; PFAM: WbqC-like protein family; SPTR: WbqC-like protein; IMG reference gene:2504824913; PFAM: WbqC-like protein family YP_004442119.1 SPTR: uncharacterized protein; IMG reference gene:2504824914 YP_004442120.1 COGs: COG0681 Signal peptidase I; InterPro IPR000223:IPR019759; KEGG: pgn:PGN_1946 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: Signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I; IMG reference gene:2504824915; PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type YP_004442121.1 COGs: COG0289 Dihydrodipicolinate reductase; InterPro IPR011770:IPR000846; KEGG: pgn:PGN_1947 dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase; PRIAM: Dihydrodipicolinate reductase; SPTR: Dihydrodipicolinate reductase; TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant; IMG reference gene:2504824916; PFAM: Dihydrodipicolinate reductase, N-terminus; Dihydrodipicolinate reductase, C-terminus; TIGRFAM: dihydrodipicolinate reductase YP_004442122.1 InterPro IPR005632; KEGG: pgn:PGN_1436 hypothetical protein; PFAM: Outer membrane chaperone Skp (OmpH); SPTR: Outer membrane protein; IMG reference gene:2504824917; PFAM: Outer membrane protein (OmpH-like) YP_004442123.1 SPTR: uncharacterized protein; IMG reference gene:2504824918 YP_004442124.1 COGs: COG2195 Di- and tripeptidase; InterPro IPR001160:IPR002933:IPR011650; KEGG: pgn:PGN_1434 aminoacyl-histidine dipeptidase; PFAM: Peptidase M20, dimerisation; Peptidase M20; PRIAM: Xaa-His dipeptidase; SPTR: Xaa-His dipeptidase; TIGRFAM: Peptidase M20C, Xaa-His dipeptidase; IMG reference gene:2504824919; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: aminoacyl-histidine dipeptidase YP_004442125.1 IMG reference gene:2504824920 YP_004442126.1 COGs: COG3344 Retron-type reverse transcriptase; InterPro IPR000477:IPR013597; KEGG: smb:smi_1764 reverse transcriptase/maturase, group II introns; PFAM: RNA-directed DNA polymerase (reverse transcriptase); Group II intron, maturase-specific; SPTR: reverse transcriptase/maturase; IMG reference gene:2504824921; PFAM: Group II intron, maturase-specific domain; Reverse transcriptase (RNA-dependent DNA polymerase) YP_004442127.1 KEGG: bfs:BF0268 hypothetical protein; SPTR: lipoprotein; IMG reference gene:2504824922 YP_004442128.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: bth:BT_1420 hypothetical protein; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; IMG reference gene:2504824923; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004442129.1 SPTR: uncharacterized protein; IMG reference gene:2504824924 YP_004442130.1 COGs: COG1864 DNA/RNA endonuclease G NUC1; InterPro IPR020821:IPR001604; KEGG: cts:Ctha_1807 DNA/RNA non-specific endonuclease; PFAM: DNA/RNA non-specific endonuclease; SMART: Extracellular Endonuclease, subunit A; SPTR: DNA/RNA non-specific endonuclease; IMG reference gene:2504824925; PFAM: DNA/RNA non-specific endonuclease YP_004442131.1 SPTR: lipoprotein; IMG reference gene:2504824926 YP_004442132.1 SPTR: lipoprotein; IMG reference gene:2504824927 YP_004442133.1 KEGG: hypothetical protein; SPTR: lipoprotein; IMG reference gene:2504824928 YP_004442134.1 KEGG: bfr:BF3847 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824929 YP_004442135.1 COGs: COG1668 ABC-type Na+ efflux pump permease component; KEGG: pgn:PGN_1005 probable ABC transporter permease protein; SPTR: ABC transporter, permease protein; IMG reference gene:2504824930 YP_004442136.1 COGs: COG4152 ABC-type uncharacterized transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: pgi:PG0946 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Monosaccharide-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: phage tail component, N-terminal domain protein; IMG reference gene:2504824931; PFAM: ABC transporter YP_004442137.1 KEGG: pgn:PGN_1003 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824932 YP_004442138.1 COGs: COG0775 Nucleoside phosphorylase; InterPro IPR010944:IPR000845; KEGG: pgn:PGN_1002 AMP nucleosidase; PFAM: Nucleoside phosphorylase; SPTR: AMP nucleosidase; TIGRFAM: AMP nucleosidase, IMG reference gene:2504824933; PFAM: Phosphorylase superfamily; TIGRFAM: AMP nucleosidase YP_004442139.1 COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR005790:IPR010372; KEGG: pgn:PGN_1001 hypothetical protein; PFAM: DNA polymerase III, delta; SPTR: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; IMG reference gene:2504824934; PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit YP_004442140.1 COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: aas:Aasi_1284 hypothetical protein; PFAM: Transposase, IS116/IS110/IS902; SPTR: Transposase, IS116/IS110/IS902 family; IMG reference gene:2504824935; PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_004442141.1 KEGG: pdi:BDI_3270 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824936 YP_004442142.1 COGs: COG0339 Zn-dependent oligopeptidase; InterPro IPR001567; KEGG: pgi:PG1789 peptidyl-dipeptidase DCP; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; PRIAM: Peptidyl-dipeptidase Dcp; SPTR: peptidyl-dipeptidase dcp; IMG reference gene:2504824937; PFAM: Peptidase family M3 YP_004442143.1 COGs: COG1449 Alpha-amylase/alpha-mannosidase; InterPro IPR004300; KEGG: pgi:PG1683 hypothetical protein; PFAM: Glycoside hydrolase, family 57, core; SPTR: Glycosyl hydrolase, family 57; IMG reference gene:2504824938; PFAM: Glycosyl hydrolase family 57 YP_004442144.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: pgn:PGN_0428 glycosyl transferase family 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyltransferase, group 1 family protein; IMG reference gene:2504824939; PFAM: Starch synthase catalytic domain; Glycosyl transferases group 1 YP_004442145.1 COGs: COG3408 Glycogen debranching protein; InterPro IPR010401; KEGG: pgi:PG1681 glycogen debranching protein; PFAM: Amylo-alpha-1,6-glucosidase; SPTR: glycogen debranching enzyme, archaeal type; IMG reference gene:2504824940; PFAM: Amylo-alpha-1,6-glucosidase; Glycogen debranching enzyme N terminal; TIGRFAM: glycogen debranching enzyme, archaeal type YP_004442146.1 COGs: COG3634 Alkyl hydroperoxide reductase large subunit; InterPro IPR012081:IPR013027; KEGG: bth:BT_2811 alkyl hydroperoxide reductase subunit F; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: NADH dehydrogenase; SPTR: Alkyl hydroperoxide reductase, F subunit; TIGRFAM: Alkyl hydroperoxide reductase, subunit F; IMG reference gene:2504824941; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: alkyl hydroperoxide reductase, F subunit YP_004442147.1 COGs: COG0450 Peroxiredoxin; InterPro IPR017559:IPR000866:IPR019479; KEGG: pdi:BDI_3396 alkyl hydroperoxide reductase subunit C; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin, C-terminal; PRIAM: Peroxiredoxin; SPTR: Peroxiredoxin; TIGRFAM: Peroxiredoxin; IMG reference gene:2504824942; PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family; TIGRFAM: peroxiredoxin YP_004442148.1 InterPro IPR012910:IPR000531; KEGG: cpi:Cpin_2740 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; IMG reference gene:2504824943 YP_004442149.1 COGs: COG0323 DNA mismatch repair enzyme (predicted ATPase); HAMAP: DNA mismatch repair protein mutL; InterPro IPR014763:IPR003594:IPR013507:IPR014790; KEGG: pgi:PG0412 DNA mismatch repair protein MutL; PFAM: DNA mismatch repair protein, C-terminal; ATP-binding region, ATPase-like; MutL, C-terminal, dimerisation; SPTR: DNA mismatch repair protein, C-terminal domain protein; TIGRFAM: DNA mismatch repair protein, N-terminal; IMG reference gene:2504824944; PFAM: MutL C terminal dimerisation domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA mismatch repair protein, C-terminal domain; TIGRFAM: DNA mismatch repair protein MutL YP_004442150.1 InterPro IPR006311; KEGG: pgn:PGN_1553 hypothetical protein; SPTR: Tat pathway signal sequence domain protein; IMG reference gene:2504824945; PFAM: OstA-like protein YP_004442151.1 InterPro IPR000297; KEGG: pgn:PGN_1552 peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; SPTR: PPIC-type PPIASE domain protein; IMG reference gene:2504824946; PFAM: PPIC-type PPIASE domain YP_004442152.1 COGs: COG0514 Superfamily II DNA helicase; InterProIPR006293:IPR018329:IPR014001:IPR001650:IPR 002121:IPR011545:IPR018982; KEGG: pgn:PGN_1551 ATP-dependent DNA helicase RecQ; PFAM: DNA/RNA helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; RQC domain; Helicase/RNase D C-terminal, HRDC domain; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type, N-terminal; IMG reference gene:2504824947; PFAM: Helicase conserved C-terminal domain; RQC domain; HRDC domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family YP_004442153.1 COGs: COG1219 ATP-dependent protease Clp ATPase subunit; HAMAP: Clp protease, ATP-binding subunit ClpX; InterProIPR004487:IPR003593:IPR010603:IPR013093:IPR 019489; KEGG: ppn:Palpr_1867 ATP-dependent clp protease ATP-binding subunit ClpX; PFAM: ATPase associated with various cellular activities, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent Clp protease, ATP-binding subunit ClpX; TIGRFAM: Clp protease, ATP-binding subunit ClpX; IMG reference gene:2504824948; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ClpX C4-type zinc finger; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX) YP_004442154.1 COGs: COG0740 Protease subunit of ATP-dependent Clp protease; HAMAP: ATP-dependent Clp protease proteolytic subunit; InterPro IPR001907; KEGG: pgi:PG0418 ATP-dependent Clp protease proteolytic subunit; PFAM: Peptidase S14, ClpP; PRIAM: Endopeptidase Clp; SPTR: Endopeptidase Clp; IMG reference gene:2504824949; PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP YP_004442155.1 InterPro IPR001611; KEGG: pgn:PGN_0852 immunoreactive 47 kDa antigen; SPTR: Leucine rich repeat protein; IMG reference gene:2504824950; PFAM: Leucine Rich Repeat YP_004442156.1 COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: cth:Cthe_1688 radical SAM family protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein; IMG reference gene:2504824951; PFAM: Radical SAM superfamily YP_004442157.1 COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; InterProIPR018320:IPR002421:IPR008918:IPR002562:IPR 001098:IPR020046:IPR020047; KEGG: pgn:PGN_1771 DNA polymerase I; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 3'-5' exonuclease; DNA-directed DNA polymerase, family A, palm domain; SPTR: DNA-directed DNA polymerase; TIGRFAM: DNA polymerase 1; IMG reference gene:2504824952; PFAM: 3'-5' exonuclease; 5'-3' exonuclease, C-terminal SAM fold; 5'-3' exonuclease, N-terminal resolvase-like domain; DNA polymerase family A; TIGRFAM: DNA polymerase I YP_004442158.1 COGs: COG0110 acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: bfr:BF0650 galactoside O-acetyltransferase; PRIAM: Maltose O-acetyltransferase; SPTR: nodulation protein L; IMG reference gene:2504824953; PFAM: Bacterial transferase hexapeptide (three repeats) YP_004442159.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: sli:Slin_6582 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver domain protein; IMG reference gene:2504824954; PFAM: Response regulator receiver domain; LytTr DNA-binding domain YP_004442160.1 COGs: COG3275 regulator of cell autolysis; InterPro IPR011110:IPR010559:IPR003594; KEGG: cpi:Cpin_1400 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; Two component regulator propeller; ATP-binding region, ATPase-like; SPTR: ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; IMG reference gene:2504824955; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Two component regulator propeller YP_004442161.1 KEGG: tde:TDE0593 internalin-related protein; SPTR: Leucine rich repeat protein; IMG reference gene:2504824956 YP_004442162.1 InterPro IPR002514; KEGG: nth:Nther_1507 transposase IS3/IS911 family protein; PFAM: Transposase IS3/IS911; SPTR: Transposase; IMG reference gene:2504824957; PFAM: Transposase YP_004442163.1 InterPro IPR001584; KEGG: pgi:PG1420 ISPg5, transposase Orf2; PFAM: Integrase, catalytic core; SPTR: ISPg5, transposase Orf2; IMG reference gene:2504824958; PFAM: Integrase core domain YP_004442164.1 InterPro IPR000200; KEGG: pgi:PG1427 thiol protease/hemagglutinin PrtT precursor, PFAM: Peptidase C10, streptopain; PRIAM: Streptopain; SPTR: Peptidase C10 family; IMG reference gene:2504824959; PFAM: Peptidase C10 family YP_004442165.1 KEGG: tde:TDE0206 surface antigen, SPTR: Leucine rich repeat protein; IMG reference gene:2504824960 YP_004442166.1 KEGG: pgn:PGN_1611 hypothetical protein; SPTR: Leucine rich repeat protein; IMG reference gene:2504824961 YP_004442167.1 COGs: COG0532 Translation initiation factor 2 (IF-2; GTPase); InterProIPR000178:IPR005225:IPR006847:IPR000795:IPR 004161; KEGG: pgi:PG0255 translation initiation factor IF-2; PFAM: Protein synthesis factor, GTP-binding; Translation initiation factor IF-2, N-terminal; Translation elongation factor EFTu/EF1A, domain 2; SPTR: Translation initiation factor IF-2; TIGRFAM: Initiation factor 2; Small GTP-binding protein; IMG reference gene:2504824962; PFAM: Elongation factor Tu domain 2; Translation-initiation factor 2; Translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2 YP_004442168.1 COGs: COG0195 Transcription elongation factor; InterPro IPR010213:IPR013735; KEGG: pgn:PGN_0354 transcription elongation factor NusA; PFAM: Transcription factor NusA, N-terminal; SPTR: Transcription termination factor NusA; TIGRFAM: Transcription termination factor NusA; IMG reference gene:2504824963; PFAM: NusA N-terminal domain; TIGRFAM: transcription termination factor NusA YP_004442169.1 HAMAP: Uncharacterised protein family UPF0090, bacteria; InterPro IPR020790; KEGG: bvu:BVU_1353 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824964; PFAM: Uncharacterised BCR, YhbC family COG0779 YP_004442170.1 COGs: COG0211 Ribosomal protein L27; HAMAP: Ribosomal protein L27; InterPro IPR001684; KEGG: pgn:PGN_1647 50S ribosomal protein L27; PFAM: Ribosomal protein L27; SPTR: Ribosomal protein L27; TIGRFAM: Ribosomal protein L27; IMG reference gene:2504824965; PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27 YP_004442171.1 COGs: COG0261 Ribosomal protein L21; HAMAP: Ribosomal protein L21; InterPro IPR001787; KEGG: pgn:PGN_1648 50S ribosomal protein L21; PFAM: Ribosomal protein L21; SPTR: Ribosomal protein L21; TIGRFAM: Ribosomal protein L21; IMG reference gene:2504824966; PFAM: Ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21 YP_004442172.1 COGs: COG1397 ADP-ribosylglycohydrolase; InterPro IPR005502; KEGG: pmz:HMPREF0659_A6302 ADP-ribosylglycohydrolase; PFAM: ADP-ribosylation/Crystallin J1; SPTR: ADP-ribosylglycohydrolase; IMG reference gene:2504824968; PFAM: ADP-ribosylglycohydrolase YP_004442173.1 IMG reference gene:2504824969 YP_004442174.1 SPTR: uncharacterized protein; IMG reference gene:2504824970 YP_004442175.1 KEGG: ppn:Palpr_1161 tetratricopeptide tpr_1 repeat-containing protein; SPTR: Tetratricopeptide repeat protein; IMG reference gene:2504824978 YP_004442176.1 InterPro IPR000326; KEGG: pgn:PGN_0524 hypothetical protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: PAP2 family protein; IMG reference gene:2504824979; PFAM: PAP2 superfamily YP_004442177.1 KEGG: pgn:PGN_0421 hypothetical protein; SPTR: Conserved domain protein; IMG reference gene:2504824980 YP_004442178.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: pru:PRU_0052 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Fe(3+)-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Lipoprotein ABC transporter, ATP-binding protein; IMG reference gene:2504824981; PFAM: ABC transporter YP_004442179.1 COGs: COG1179 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 1; InterPro IPR000594; KEGG: pgn:PGN_0419 dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis; PFAM: UBA/THIF-type NAD/FAD binding fold; SPTR: ThiF family protein; IMG reference gene:2504824982; PFAM: ThiF family YP_004442180.1 COGs: COG1559 periplasmic solute-binding protein; InterPro IPR003770; KEGG: pgn:PGN_0418 hypothetical protein; PFAM: Uncharacterised protein family YceG-like; SPTR: YceG family protein; TIGRFAM: Uncharacterised protein family YceG-like; IMG reference gene:2504824983; PFAM: YceG-like family; TIGRFAM: conserved hypothetical protein, YceG family YP_004442181.1 InterPro IPR007139; KEGG: pgn:PGN_0935 hypothetical protein; PFAM: Protein of unknown function DUF349; SPTR: uncharacterized protein; IMG reference gene:2504824984; PFAM: Domain of Unknown Function (DUF349) YP_004442182.1 IMG reference gene:2504824985 YP_004442183.1 KEGG: pgn:PGN_0878 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824986 YP_004442184.1 COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: pgi:PG1038 ATP-dependent DNA helicase UvrD/PcrA/Rep family; PFAM: DNA helicase, UvrD/REP type; SPTR: UvrD/REP helicase; IMG reference gene:2504824987; PFAM: UvrD/REP helicase YP_004442185.1 InterPro IPR007527; KEGG: pgn:PGN_1315 hypothetical protein; SPTR: SWIM zinc finger domain protein; IMG reference gene:2504824988 YP_004442186.1 COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR004602:IPR003439; KEGG: bvu:BVU_3046 excinuclease ABC subunit A; PFAM: ABC transporter-like; SPTR: Excinuclease ABC, A subunit; TIGRFAM: Excinuclease ABC, A subunit; IMG reference gene:2504824989; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit YP_004442187.1 COGs: COG0245 2C-methyl-D-erythritol 2 4-cyclodiphosphate synthase; HAMAP: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; InterPro IPR003526; KEGG: afn:Acfer_0719 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; SPTR: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; IMG reference gene:2504824990; PFAM: YgbB family; TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_004442188.1 KEGG: pgn:PGN_0023 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824991 YP_004442189.1 COGs: COG0606 ATPase with chaperone activity; InterPro IPR004482:IPR003593:IPR000523; KEGG: pdi:BDI_2803 magnesium chelatase subunit ChlI; PFAM: Magnesium chelatase, ChlI subunit; SMART: ATPase, AAA+ type, core; SPTR: Mg chelatase-like protein; TIGRFAM: Mg chelatase-related protein; IMG reference gene:2504824992; PFAM: Magnesium chelatase, subunit ChlI; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: Mg chelatase-related protein YP_004442190.1 SPTR: lipoprotein; IMG reference gene:2504824993 YP_004442191.1 COGs: COG0761 Penicillin tolerance protein; InterPro IPR003451; KEGG: bfs:BF3536 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein; PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SPTR: LytB protein; IMG reference gene:2504824994; PFAM: LytB protein; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) YP_004442192.1 COGs: COG0283 Cytidylate kinase; HAMAP: Cytidylate kinase; InterPro IPR003136:IPR000623:IPR011994; KEGG: pgn:PGN_0646 cytidylate kinase; PFAM: Cytidylate kinase region; Shikimate kinase; PRIAM: Cytidylate kinase; SPTR: Cytidylate kinase; TIGRFAM: Cytidylate kinase; IMG reference gene:2504824995; PFAM: Cytidylate kinase; TIGRFAM: cytidylate kinase YP_004442193.1 KEGG: pgi:PG0602 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504824996 YP_004442194.1 COGs: COG0670 Integral membrane protein interacts with FtsH; InterPro IPR006214; KEGG: pgn:PGN_0818 hypothetical protein; PFAM: Uncharacterised protein family UPF0005; SPTR: membrane protein; IMG reference gene:2504824997; PFAM: Uncharacterised protein family UPF0005 YP_004442195.1 SPTR: uncharacterized protein; IMG reference gene:2504824998; PFAM: Protein of unknown function (DUF2807) YP_004442196.1 COGs: COG0793 Periplasmic protease; InterPro IPR011659:IPR005151; KEGG: bvu:BVU_1192 peptidase/protease family protein; PFAM: Peptidase S41; WD40-like Beta Propeller; SPTR: WD40-like protein; IMG reference gene:2504824999; PFAM: WD40-like Beta Propeller Repeat; Peptidase family S41; PDZ domain (Also known as DHR or GLGF) YP_004442197.1 COGs: COG0326 Molecular chaperone HSP90 family; InterPro IPR003594:IPR020576; KEGG: pgi:PG0045 heat shock protein 90; PFAM: Heat shock protein Hsp90, C-terminal; ATP-binding region, ATPase-like; SPTR: Hsp90 protein; IMG reference gene:2504825000; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Hsp90 protein YP_004442198.1 COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterPro IPR003593:IPR003959:IPR013093:IPR019489; KEGG: pgn:PGN_0008 ATP-dependent Clp protease ATP-binding subunit ClpC; PFAM: ATPase associated with various cellular activities, AAA-2; ATPase, AAA-type, core; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: negative regulator of genetic competence ClpC/MecB; IMG reference gene:2504825001; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA) YP_004442199.1 COGs: COG4123 O-methyltransferase; InterPro IPR013216; KEGG: eca:ECA3286 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Methyltransferase domain protein; IMG reference gene:2504825005; PFAM: Methyltransferase small domain YP_004442200.1 COGs: COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); InterProIPR006275:IPR005481:IPR005479:IPR005480:IPR 011607; KEGG: pgn:PGN_1443 carbamoyl-phosphate synthase large subunit; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Carbamoyl phosphate synthetase, large subunit, oligomerisation; MGS-like; PRIAM: Carbamoyl-phosphate synthase (ammonia); SPTR: Carbamoyl-phosphate synthase, large subunit; TIGRFAM: Carbamoyl phosphate synthase, large subunit, glutamine-dependent; IMG reference gene:2504825006; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; MGS-like domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit YP_004442201.1 COGs: COG0505 Carbamoylphosphate synthase small subunit; InterPro IPR006274:IPR002474:IPR000991; KEGG: pgn:PGN_1444 carbamoyl phosphate synthase small subunit; PFAM: Carbamoyl phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal; PRIAM: Carbamoyl-phosphate synthase (glutamine-hydrolyzing); SPTR: Carbamoyl-phosphate synthase, small subunit; TIGRFAM: Carbamoyl phosphate synthase, small subunit; IMG reference gene:2504825007; PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit YP_004442202.1 COGs: COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; InterPro IPR000583; KEGG: pgn:PGN_1445 amidophosphoribosyltransferase; PFAM: Glutamine amidotransferase, class-II; PRIAM: Amidophosphoribosyltransferase; SPTR: Class II glutamine amidotransferase; IMG reference gene:2504825008; PFAM: Glutamine amidotransferases class-II YP_004442203.1 COGs: COG0706 Preprotein translocase subunit YidC; HAMAP: Membrane protein oxaA; InterPro IPR019998:IPR020001:IPR001708; KEGG: pgn:PGN_1446 inner membrane protein translocase component YidC; PFAM: Membrane insertion protein, OxaA/YidC; SPTR: Membrane protein insertase, YidC/Oxa1 family; TIGRFAM: Membrane insertion protein, OxaA/YidC, core; Membrane insertion protein, OxoA/YidC, N-terminal; IMG reference gene:2504825009; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; membrane protein insertase, YidC/Oxa1 family, N-terminal domain YP_004442204.1 COGs: COG0504 CTP synthase (UTP-ammonia lyase); HAMAP: CTP synthase; InterPro IPR004468:IPR017456:IPR000991; KEGG: pgi:PG0525 CTP synthetase; PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal; PRIAM: CTP synthase; SPTR: CTP synthase; TIGRFAM: CTP synthase; IMG reference gene:2504825010; PFAM: Glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase YP_004442205.1 InterPro IPR001647; KEGG: ppn:Palpr_2412 regulatory protein TetR; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; IMG reference gene:2504825011; PFAM: Bacterial regulatory proteins, tetR family YP_004442206.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: gtn:GTNG_1960 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Polyamine-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; IMG reference gene:2504825012; PFAM: ABC transporter YP_004442207.1 KEGG: pmz:HMPREF0659_A5632 hypothetical protein; SPTR: membrane protein; IMG reference gene:2504825013 YP_004442208.1 InterPro IPR012910; KEGG: pgn:PGN_1347 TonB-dependent receptor exported protein; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug domain protein; IMG reference gene:2504825014 YP_004442209.1 IMG reference gene:2504825015 YP_004442210.1 SPTR: uncharacterized protein; IMG reference gene:2504825016 YP_004442211.1 COGs: COG0688 Phosphatidylserine decarboxylase; HAMAP: Phosphatidylserine decarboxylase proenzyme; InterPro IPR004428:IPR003817; KEGG: pgn:PGN_0984 phosphatidylserine decarboxylase; PFAM: Phosphatidylserine decarboxylase-related; PRIAM: Phosphatidylserine decarboxylase; SPTR: Phosphatidylserine decarboxylase; TIGRFAM: Phosphatidylserine decarboxylase-related protein; IMG reference gene:2504825017; PFAM: Phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase precursor-related protein YP_004442212.1 COGs: COG1183 Phosphatidylserine synthase; InterPro IPR000462; KEGG: pgn:PGN_0985 probable phosphatidylserine synthase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-diacylglycerol-serine O-phosphatidyltransferase; IMG reference gene:2504825018; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase YP_004442213.1 SPTR: uncharacterized protein; IMG reference gene:2504825019 YP_004442214.1 COGs: COG0305 Replicative DNA helicase; InterPro IPR007692:IPR007693:IPR007694; KEGG: pgi:PG1242 replicative DNA helicase; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; SPTR: Replicative DNA helicase; TIGRFAM: DNA helicase, DnaB type; IMG reference gene:2504825020; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase YP_004442215.1 COGs: COG0481 Membrane GTPase LepA; HAMAP: GTP-binding protein lepA; InterProIPR005225:IPR006297:IPR000795:IPR004161:IPR 000640:IPR013842; KEGG: pgn:PGN_1377 GTP-binding protein LepA; PFAM: GTP-binding protein LepA, C-terminal; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; SPTR: GTP-binding protein LepA; TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; IMG reference gene:2504825021; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; GTP-binding protein LepA C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain YP_004442216.1 COGs: COG0217 conserved hypothetical protein; HAMAP: Protein of unknown function DUF28; InterPro IPR002876; KEGG: pgi:PG0097 hypothetical protein; PFAM: Protein of unknown function DUF28; SPTR: DNA-binding regulatory protein, YebC/PmpR family; TIGRFAM: Protein of unknown function DUF28; IMG reference gene:2504825022; PFAM: Domain of unknown function DUF28; TIGRFAM: DNA-binding regulatory protein, YebC/PmpR family YP_004442217.1 COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; InterProIPR004532:IPR002547:IPR005146:IPR005147:IPR 005121; KEGG: pgn:PGN_2045 phenylalanyl-tRNA synthetase subunit beta; PFAM: B3/B4 tRNA-binding domain; tRNA-binding region; tRNA synthetase, B5; Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding; SPTR: Phenylalanine--tRNA ligase, beta subunit; TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; IMG reference gene:2504825023; PFAM: tRNA synthetase B5 domain; Ferredoxin-fold anticodon binding domain; B3/4 domain; tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial YP_004442218.1 COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: pgn:PGN_1898 probable transport protein; PFAM: Mechanosensitive ion channel MscS; SPTR: Transporter, small conductance mechanosensitive ion channel MscS family protein; IMG reference gene:2504825024; PFAM: Mechanosensitive ion channel YP_004442219.1 InterPro IPR001611; KEGG: pgi:PG0350 internalin-related protein; PFAM: Leucine-rich repeat; SPTR: Leucine Rich Repeat domain protein; IMG reference gene:2504825025 YP_004442220.1 COGs: COG0611 Thiamine monophosphate kinase; InterPro IPR006283:IPR000728:IPR010918; KEGG: thiamine-phosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein, C-terminal; PRIAM: Thiamine-phosphate kinase; SPTR: Thiamine-phosphate kinase; TIGRFAM: Thiamine-monophosphate kinase; IMG reference gene:2504825026; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: thiamine-monophosphate kinase YP_004442221.1 COGs: COG1663 Tetraacyldisaccharide-1-P 4'-kinase; HAMAP: Tetraacyldisaccharide 4'-kinase; InterPro IPR003758; KEGG: pgn:PGN_0679 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide 4'-kinase; PRIAM: Tetraacyldisaccharide 4'-kinase; SPTR: Tetraacyldisaccharide 4'-kinase; TIGRFAM: Tetraacyldisaccharide 4'-kinase; IMG reference gene:2504825027; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase YP_004442222.1 COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR004634:IPR004635:IPR002142; KEGG: pgn:PGN_0680 signal peptide peptidase SppA 67K type; PFAM: Peptidase S49; SPTR: Signal peptide peptidase SppA, 67K type; TIGRFAM: Peptidase S49, protease IV; Peptidase S49, SppA; IMG reference gene:2504825028; PFAM: Peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type; signal peptide peptidase SppA, 67K type YP_004442223.1 KEGG: pgn:PGN_1416 probable lysyl endopeptidase precursor; SPTR: uncharacterized protein; IMG reference gene:2504825029 YP_004442224.1 COGs: COG1346 effector of murein hydrolase; InterPro IPR007300; KEGG: pdi:BDI_2587 hypothetical protein; PFAM: LrgB-like protein; SPTR: TIGR00659 family protein; IMG reference gene:2504825030; PFAM: LrgB-like family; TIGRFAM: TIGR00659 family protein YP_004442225.1 COGs: COG1380 effector of murein hydrolase LrgA; InterPro IPR005538; KEGG: pdi:BDI_2586 hypothetical protein; PFAM: LrgA; SPTR: LrgA family protein; IMG reference gene:2504825031; PFAM: LrgA family YP_004442226.1 InterPro IPR001611; KEGG: pmz:HMPREF0659_A5346 leucine rich repeat protein; PFAM: Leucine-rich repeat; SPTR: Leucine rich repeat protein; IMG reference gene:2504825032; PFAM: Leucine Rich Repeat YP_004442227.1 KEGG: pgn:PGN_0262 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825033 YP_004442228.1 COGs: COG0621 2-methylthioadenine synthetase; HAMAP: Ribosomal protein S12 methylthiotransferase RimO; InterProIPR005839:IPR005840:IPR006638:IPR013848:IPR 007197; KEGG: pdi:BDI_0942 Fe-S oxidoreductase; PFAM: Radical SAM; Methylthiotransferase, N-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: Ribosomal protein S12 methylthiotransferase RimO; TIGRFAM: Ribosomal protein S12 methylthiotransferase RimO; Methylthiotransferase; IMG reference gene:2504825034; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: ribosomal protein S12 methylthiotransferase RimO; radical SAM methylthiotransferase, MiaB/RimO family YP_004442229.1 COGs: COG0552 Signal recognition particle GTPase; InterPro IPR004390:IPR003593:IPR013822:IPR000897; KEGG: pgn:PGN_0264 signal recognition particle-docking protein; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; SMART: ATPase, AAA+ type, core; SPTR: Signal recognition particle-docking protein FtsY; TIGRFAM: Cell division transporter substrate-binding protein FtsY; IMG reference gene:2504825035; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY YP_004442230.1 COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR005730:IPR000183; KEGG: pgn:PGN_0265 carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Carboxynorspermidine decarboxylase; TIGRFAM: Carboxynorspermidine decarboxylase; IMG reference gene:2504825036; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: carboxynorspermidine decarboxylase YP_004442231.1 COGs: COG0108 3 4-dihydroxy-2-butanone 4-phosphate synthase; HAMAP: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro IPR000422; KEGG: sfr:Sfri_3868 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: DHBP synthase RibB; SPTR: 3,4-dihydroxy-2-butanone-4-phosphate synthase; TIGRFAM: DHBP synthase RibB; IMG reference gene:2504825037; PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_004442232.1 COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; InterProIPR004811:IPR003607:IPR006674:IPR007685:IPR 004095; KEGG: pgi:PG1808 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; PFAM: RelA/SpoT; Metal-dependent phosphohydrolase, HD region, subdomain; TGS; PRIAM: GTP diphosphokinase; SMART: Metal-dependent phosphohydrolase, HD region; SPTR: GTP diphosphokinase; TIGRFAM: RelA/SpoT protein; IMG reference gene:2504825038; PFAM: HD domain; TGS domain; Region found in RelA / SpoT proteins; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family YP_004442233.1 COGs: COG0132 Dethiobiotin synthetase; HAMAP: Dethiobiotin synthase; InterPro IPR004472; KEGG: pgn:PGN_1997 dithiobiotin synthetase; PRIAM: Dethiobiotin synthase; SPTR: Dethiobiotin synthase; TIGRFAM: Dethiobiotin synthase; IMG reference gene:2504825039; TIGRFAM: dethiobiotin synthase YP_004442234.1 InterPro IPR007341; KEGG: pdi:BDI_0929 hypothetical protein; PFAM: Transglycosylase-associated protein; SPTR: Transglycosylase associated protein; IMG reference gene:2504825040; PFAM: Transglycosylase associated protein YP_004442235.1 COGs: COG1773 Rubredoxin; InterPro IPR004039; KEGG: cac:CA_C2778 rubredoxin; PFAM: Rubredoxin-type Fe(Cys)4 protein; SPTR: Rubredoxin; IMG reference gene:2504825041; PFAM: Rubredoxin YP_004442236.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: pgn:PGN_1432 probable outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; IMG reference gene:2504825042; PFAM: Outer membrane efflux protein YP_004442237.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: pgi:PG0539 RND family efflux transporter MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; IMG reference gene:2504825043; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_004442238.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: pgi:PG0540 AcrB/AcrD/AcrF family protein; PFAM: Acriflavin resistance protein; SPTR: Heavy metal efflux pump, CzcA family; IMG reference gene:2504825044; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family YP_004442239.1 KEGG: pgn:PGN_1429 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825045 YP_004442240.1 COGs: COG0192 S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthase; InterPro IPR002133; KEGG: pgi:PG1896 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; PRIAM: Methionine adenosyltransferase; SPTR: Methionine adenosyltransferase; TIGRFAM: S-adenosylmethionine synthetase; IMG reference gene:2504825046; PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal domain; TIGRFAM: S-adenosylmethionine synthetase YP_004442241.1 InterPro IPR002481; KEGG: pgn:PGN_1503 probable ferric uptake transcriptional regulator; PFAM: Ferric-uptake regulator; SPTR: uncharacterized protein; IMG reference gene:2504825047; PFAM: Ferric uptake regulator family YP_004442242.1 IMG reference gene:2504825048 YP_004442243.1 COGs: COG1194 A/G-specific DNA glycosylase; InterPro IPR005760:IPR003265; KEGG: pgn:PGN_0856 A/G-specific adenine glycosylase; PFAM: HhH-GPD domain; SMART: HhH-GPD domain; SPTR: A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form; IMG reference gene:2504825049; PFAM: HhH-GPD superfamily base excision DNA repair protein; TIGRFAM: A/G-specific adenine glycosylase YP_004442244.1 COGs: COG0205 6-phosphofructokinase; HAMAP: 6-phosphofructokinase; InterPro IPR012828:IPR000023; KEGG: bvu:BVU_1935 6-phosphofructokinase; PFAM: Phosphofructokinase; PRIAM: 6-phosphofructokinase; SPTR: 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; IMG reference gene:2504825050; PFAM: Phosphofructokinase; TIGRFAM: 6-phosphofructokinase YP_004442245.1 COGs: COG2003 DNA repair protein; InterPro IPR001405; KEGG: pgn:PGN_1046 DNA repair protein; PFAM: DNA repair, RadC-like; SPTR: DNA repair protein RadC; TIGRFAM: DNA repair, RadC-like; IMG reference gene:2504825051; PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc YP_004442246.1 COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA dimethylallyltransferase; InterPro IPR018022:IPR002627; KEGG: pgn:PGN_1626 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: tRNA dimethylallyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; IMG reference gene:2504825052; PFAM: IPP transferase; TIGRFAM: tRNA dimethylallyltransferase YP_004442247.1 KEGG: pgn:PGN_1625 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825053 YP_004442248.1 COGs: COG0302 GTP cyclohydrolase I; HAMAP: GTP cyclohydrolase I; InterPro IPR001474:IPR020602; KEGG: pgn:PGN_0667 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; PRIAM: GTP cyclohydrolase I; SPTR: GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I; IMG reference gene:2504825054; PFAM: GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I YP_004442249.1 InterPro IPR007730; KEGG: pgi:PG0624 hypothetical protein; PFAM: Sporulation/cell division region, bacteria; SPTR: Sporulation and cell division repeat protein; IMG reference gene:2504825055; PFAM: Sporulation related domain YP_004442250.1 COGs: COG0149 Triosephosphate isomerase; InterPro IPR000652; KEGG: pdi:BDI_2695 triosephosphate isomerase; PFAM: Triosephosphate isomerase; PRIAM: Triose-phosphate isomerase; SPTR: Triose-phosphate isomerase; TIGRFAM: Triosephosphate isomerase; IMG reference gene:2504825056; PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase YP_004442251.1 KEGG: pgn:PGN_0664 hypothetical protein; SPTR: membrane protein; IMG reference gene:2504825057 YP_004442252.1 InterPro IPR011630; KEGG: pgn:PGN_0663 hypothetical protein; PFAM: Protein of unknown function DUF1599; SPTR: uncharacterized protein; IMG reference gene:2504825058; PFAM: Domain of Unknown Function (DUF1599) YP_004442253.1 COGs: COG0466 ATP-dependent Lon protease; InterProIPR004815:IPR003111:IPR003593:IPR003959:IPR 008269; KEGG: pdi:BDI_1874 ATP-dependent protease; PFAM: Peptidase S16, lon C-terminal; ATPase, AAA-type, core; Peptidase S16, lon N-terminal; PRIAM: Endopeptidase La; SMART: ATPase, AAA+ type, core; Peptidase S16, lon N-terminal; SPTR: Endopeptidase La; TIGRFAM: Peptidase S16, ATP-dependent protease La; IMG reference gene:2504825059; PFAM: ATP-dependent protease La (LON) domain; ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La YP_004442254.1 COGs: COG1368 Phosphoglycerol transferase and related protein alkaline phosphatase superfamily; InterPro IPR000917; KEGG: phe:Phep_3271 sulfatase; PFAM: Sulfatase; SPTR: Arylsulfatase; IMG reference gene:2504825060; PFAM: Sulfatase YP_004442255.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: bvu:BVU_1069 glycosyl transferase family protein; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyltransferase, group 1 family protein; IMG reference gene:2504825061; PFAM: Glycosyl transferases group 1 YP_004442256.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: shw:Sputw3181_0057 glycosyl transferase family protein; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase, group 2 family protein; IMG reference gene:2504825062; PFAM: Glycosyl transferase family 2 YP_004442257.1 KEGG: dsh:Dshi_3292 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825063 YP_004442258.1 COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterProIPR011557:IPR003594:IPR001241:IPR013506:IPR 006171:IPR002288; KEGG: pdi:BDI_3550 DNA gyrase, B subunit; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like; SPTR: DNA gyrase, B subunit; TIGRFAM: DNA gyrase, subunit B; IMG reference gene:2504825064; PFAM: Toprim domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: DNA gyrase, B subunit YP_004442259.1 COGs: COG2264 Ribosomal protein L11 methylase; InterPro IPR010456; KEGG: pgi:PG0635 ribosomal protein L11 methyltransferase; PFAM: Ribosomal L11 methyltransferase; SPTR: Ribosomal protein L11 methyltransferase; IMG reference gene:2504825065; PFAM: Ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase YP_004442260.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: pgn:PGN_0677 multi antimicrobial extrusion protein MatE; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: Mate efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; manually curated; IMG reference gene:2504825066; PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_004442261.1 InterPro IPR011138; KEGG: aps:CFPG_453 fumarate reductase cytochrome b subunit; SPTR: Succinate dehydrogenase cytochrome B subunit, b558 family; TIGRFAM: Succinate dehydrogenase, cytochrome b558 subunit; IMG reference gene:2504825067; TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family YP_004442262.1 COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR011280:IPR003953:IPR004112; KEGG: pgi:PG1615 succinate dehydrogenase flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; PRIAM: Succinate dehydrogenase; SPTR: Succinate dehydrogenase flavoprotein subunit; TIGRFAM: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit, low-GC Gram-positive bacteria; IMG reference gene:2504825068; PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup YP_004442263.1 COGs: COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein subunit; InterPro IPR001450; KEGG: pgi:PG1614 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: Succinate dehydrogenase/fumarate reductase iron-sulfur subunit; IMG reference gene:2504825069; PFAM: 2Fe-2S iron-sulfur cluster binding domain; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_004442264.1 COGs: COG0239 Integral membrane protein possibly involved in chromosome condensation; HAMAP: CrcB-like protein; InterPro IPR003691; KEGG: aps:CFPG_698 protein CrcB-homolog; PFAM: Camphor resistance CrcB protein; SPTR: Protein CrcB; TIGRFAM: Camphor resistance CrcB protein; IMG reference gene:2504825070; PFAM: CrcB-like protein; TIGRFAM: crcB protein YP_004442265.1 InterPro IPR011467; KEGG: pgi:PG0319 hypothetical protein; PFAM: Protein of unknown function DUF1573; SPTR: uncharacterized protein; IMG reference gene:2504825071; PFAM: Protein of unknown function (DUF1573) YP_004442266.1 InterPro IPR011467; KEGG: pgn:PGN_1642 hypothetical protein; PFAM: Protein of unknown function DUF1573; SPTR: uncharacterized protein; IMG reference gene:2504825072; PFAM: Protein of unknown function (DUF1573) YP_004442267.1 COGs: COG1703 periplasmic protein kinase ArgK and related GTPase of G3E family; InterPro IPR005129; KEGG: pgn:PGN_1641 arginine/ornithine transport system ATPase; PFAM: ArgK protein; SPTR: LAO/AO transport system ATPase; TIGRFAM: ArgK protein; IMG reference gene:2504825073; PFAM: ArgK protein; TIGRFAM: LAO/AO transport system ATPase YP_004442268.1 SPTR: uncharacterized protein; IMG reference gene:2504825074 YP_004442269.1 COGs: COG0220 S-adenosylmethionine-dependent methyltransferase; HAMAP: tRNA (guanine-N(7)-)-methyltransferase; InterPro IPR003358; KEGG: bvu:BVU_0267 tRNA (guanine-N(7)-)-methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase; PRIAM: tRNA (guanine-N(7)-)-methyltransferase; SPTR: tRNA (Guanine-N(7)-)-methyltransferase; IMG reference gene:2504825075; PFAM: methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase YP_004442270.1 COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR019591; KEGG: pgn:PGN_0990 ATP-binding protein Mrp/Nbp35 family; PFAM: ATPase-like, ParA/MinD; SPTR: ATP-binding protein, Mrp/Nbp35 family; IMG reference gene:2504825076; PFAM: ParA/MinD ATPase like; Anion-transporting ATPase YP_004442271.1 KEGG: pgi:PG0188 lipoprotein; SPTR: uncharacterized protein; IMG reference gene:2504825077 YP_004442272.1 KEGG: pgn:PGN_0297 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825078 YP_004442273.1 COGs: COG0020 Undecaprenyl pyrophosphate synthase; HAMAP: Undecaprenyl pyrophosphate synthase; InterPro IPR001441; KEGG: ppn:Palpr_1443 undecaprenyl pyrophosphate synthetase; PFAM:Di-trans-poly-cis-decaprenylcistransferase-lik e; PRIAM: Di-trans,poly-cis-decaprenylcistransferase; SPTR: Di-trans,poly-cis-decaprenylcistransferase; TIGRFAM:Di-trans-poly-cis-decaprenylcistransferase- like; IMG reference gene:2504825079; PFAM: undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase YP_004442274.1 COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827:IPR000184; KEGG: pgi:PG0191 outer membrane protein, PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Outer membrane protein, OMP85 family; IMG reference gene:2504825080; PFAM: Surface antigen variable number repeat; TIGRFAM: outer membrane protein assembly complex, YaeT protein YP_004442275.1 COGs: COG2825 Outer membrane protein; InterPro IPR005632; KEGG: pgn:PGN_0300 hypothetical protein; PFAM: Outer membrane chaperone Skp (OmpH); SPTR: Outer membrane protein; IMG reference gene:2504825081; PFAM: Outer membrane protein (OmpH-like) YP_004442276.1 COGs: COG2825 Outer membrane protein; InterPro IPR005632; KEGG: pgn:PGN_0301 hypothetical protein; PFAM: Outer membrane chaperone Skp (OmpH); SPTR: Outer membrane protein; IMG reference gene:2504825082; PFAM: Outer membrane protein (OmpH-like) YP_004442277.1 COGs: COG2185 Methylmalonyl-CoA mutase C-terminal domain/subunit (cobalamin-binding); InterPro IPR006394:IPR006158; KEGG: tde:TDE1023 methylaspartate mutase subunit S; PFAM: Cobalamin (vitamin B12)-binding; PRIAM: Methylaspartate mutase; SPTR: Methylaspartate mutase, S subunit; TIGRFAM: Methylaspartate mutase S subunit; IMG reference gene:2504825083; PFAM: B12 binding domain; TIGRFAM: methylaspartate mutase, S subunit; methylmalonyl-CoA mutase C-terminal domain YP_004442278.1 InterPro IPR006230; KEGG: ctc:CTC02567 glutamate mutase, MutL; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP01319, GlmL; IMG reference gene:2504825084; TIGRFAM: conserved hypothetical protein YP_004442279.1 COGs: COG4865 Glutamate mutase epsilon subunit; InterPro IPR006396; KEGG: aar:Acear_0479 glutamate mutase subunit E; PFAM: Glutamate mutase, E subunit; PRIAM: Methylaspartate mutase; SPTR: Methylaspartate mutase, E subunit; TIGRFAM: Glutamate mutase, E subunit; IMG reference gene:2504825085; PFAM: Methylaspartate mutase E chain (MutE); TIGRFAM: methylaspartate mutase, E subunit YP_004442280.1 COGs: COG3799 Methylaspartate ammonia-lyase; InterPro IPR006395; KEGG: tde:TDE2235 methylaspartate ammonia-lyase; PFAM: Methylaspartate ammonia-lyase; PRIAM: Methylaspartate ammonia-lyase; SPTR: Methylaspartate ammonia-lyase; TIGRFAM: Methylaspartate ammonia-lyase; IMG reference gene:2504825086; PFAM: Methylaspartate ammonia-lyase C-terminus; Methylaspartate ammonia-lyase N-terminus; TIGRFAM: methylaspartate ammonia-lyase YP_004442281.1 KEGG: hor:Hore_15420 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825087; PFAM: Protein of unknown function (DUF1446) YP_004442282.1 KEGG: chy:CHY_0584 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825088 YP_004442283.1 COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; InterPro IPR004803:IPR002616; KEGG: pgi:PG0500 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; PRIAM: tRNA-guanine transglycosylase; SPTR: tRNA-guanine transglycosylase; TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; IMG reference gene:2504825089; PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming YP_004442284.1 KEGG: pgi:PG1304 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825090; PFAM: Protein of unknown function (DUF3078) YP_004442285.1 COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; InterPro IPR005259; KEGG: pgn:PGN_1979 primosomal protein N; SPTR: Primosomal protein N'; TIGRFAM: Primosomal protein n; IMG reference gene:2504825091; TIGRFAM: primosomal protein N' YP_004442286.1 COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR006004:IPR013027; KEGG: pdi:BDI_3682 NADPH-dependent glutamate synthase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Glutamate synthase (NADPH); SPTR: Glutamate synthase (NADPH), homotetrameric; TIGRFAM: Glutamate synthase (NADPH), homotetrameric; IMG reference gene:2504825092; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthase (NADPH), homotetrameric YP_004442287.1 COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase; InterPro IPR008333:IPR001433:IPR019480; KEGG: pgn:PGN_1981 ferredoxin-NADP(+) reductase subunit alpha; PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; SPTR: Oxidoreductase NAD-binding domain protein; IMG reference gene:2504825093; PFAM: Oxidoreductase FAD-binding domain; Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Oxidoreductase NAD-binding domain YP_004442288.1 COGs: COG0366 Glycosidase; InterPro IPR006589:IPR006047; KEGG: pgn:PGN_1044 alpha-amylase; PFAM: Glycosyl hydrolase, family 13, catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; SPTR: Alpha amylase, catalytic domain protein; IMG reference gene:2504825094; PFAM: Alpha amylase, catalytic domain YP_004442289.1 COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: pdi:BDI_3773 hypothetical protein; PFAM: Patatin; SPTR: NTE family protein RssA family protein; IMG reference gene:2504825095; PFAM: Patatin-like phospholipase YP_004442290.1 COGs: COG1295 membrane protein; InterPro IPR017039:IPR004664; KEGG: pgn:PGN_0991 ribonuclease BN; PFAM: Ribonuclease BN-related; SPTR: YihY family protein; TIGRFAM: Ribonuclease BN; IMG reference gene:2504825096; PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN) YP_004442291.1 COGs: COG3588 Fructose-1 6-bisphosphate aldolase; HAMAP: Fructose-bisphosphate aldolase class 1; InterPro IPR000741; KEGG: pgn:PGN_1695 fructose-1,6-bisphosphate aldolase; PFAM: Fructose-bisphosphate aldolase, class-I; SPTR: Fructose-bisphosphate aldolase class-I; IMG reference gene:2504825098; PFAM: Fructose-bisphosphate aldolase class-I YP_004442292.1 InterPro IPR000504; KEGG: pgn:PGN_0668 RNA-binding protein; PFAM: RNA recognition motif, RNP-1; SMART: RNA recognition motif, RNP-1; SPTR: uncharacterized protein; IMG reference gene:2504825099; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) YP_004442293.1 COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR002646:IPR006674; KEGG: pdi:BDI_2053 tRNA nucleotidyltransferase; PFAM: Polynucleotide adenylyltransferase region; Metal-dependent phosphohydrolase, HD region, subdomain; PRIAM: tRNA adenylyltransferase; SPTR: tRNA nucleotidyltransferase/poly(A) polymerase family protein; IMG reference gene:2504825100; PFAM: HD domain; Poly A polymerase head domain; TIGRFAM: uncharacterized domain HDIG YP_004442294.1 SPTR: uncharacterized protein; IMG reference gene:2504825101 YP_004442295.1 COGs: COG2865 transcriptional regulator protein; InterPro IPR007421; KEGG: bth:BT_4229 hypothetical protein; PFAM: ATPase associated with various cellular activities, AAA-4; SPTR: Divergent AAA domain protein; IMG reference gene:2504825102; PFAM: Divergent AAA domain YP_004442296.1 COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterPro IPR004514:IPR020058:IPR020059; KEGG: pgi:PG1951 glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; PRIAM: Glutamine--tRNA ligase; SPTR: Glutamine--tRNA ligase; TIGRFAM: Glutaminyl-tRNA synthetase, class Ic; IMG reference gene:2504825103; PFAM: tRNA synthetases class I (E and Q), catalytic domain; tRNA synthetases class I (E and Q), anti-codon binding domain; TIGRFAM: glutaminyl-tRNA synthetase YP_004442297.1 COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: bth:BT_1327 alkaline phosphatase; PFAM: SNARE associated Golgi protein; SPTR: SNARE-like domain protein; IMG reference gene:2504825104; PFAM: SNARE associated Golgi protein YP_004442298.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: pgn:PGN_1370 NAD-dependent nucleotide-diphosphate-sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: L-threonine 3-dehydrogenase; SPTR: NAD dependent epimerase/dehydratase family protein; IMG reference gene:2504825105; PFAM: NAD dependent epimerase/dehydratase family YP_004442299.1 InterPro IPR001584; KEGG: pgi:PG1420 ISPg5, transposase Orf2; PFAM: Integrase, catalytic core; SPTR: ISPg5, transposase Orf2; IMG reference gene:2504825106; PFAM: Integrase core domain YP_004442300.1 InterPro IPR002514; KEGG: nth:Nther_1507 transposase IS3/IS911 family protein; PFAM: Transposase IS3/IS911; SPTR: Transposase; IMG reference gene:2504825107; PFAM: Transposase YP_004442301.1 COGs: COG4744 conserved hypothetical protein; InterPro IPR018676; KEGG: bvu:BVU_2197 hypothetical protein; PFAM: Protein of unknown function DUF2149; SPTR: uncharacterized protein; IMG reference gene:2504825108; PFAM: Uncharacterized conserved protein (DUF2149) YP_004442302.1 InterPro IPR002898; KEGG: pgi:PG1555 hypothetical protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Transporter, MotA/TolQ/ExbB proton channel family protein; IMG reference gene:2504825109; PFAM: MotA/TolQ/ExbB proton channel family YP_004442303.1 KEGG: pgn:PGN_0555 hypothetical protein; SPTR: membrane protein; IMG reference gene:2504825110 YP_004442304.1 COGs: COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatase; InterPro IPR003672; KEGG: pgn:PGN_0556 cobalamin biosynthesis-related protein; PFAM: CobN/magnesium chelatase; PRIAM: Cobaltochelatase; SPTR: CobN/magnesium chelatase domain protein; IMG reference gene:2504825111; PFAM: CobN/Magnesium Chelatase YP_004442305.1 COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: pgn:PGN_0557 TonB-dependent receptor HmuR; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug domain protein; IMG reference gene:2504825112; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004442306.1 KEGG: pgn:PGN_0558 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825113 YP_004442307.1 SPTR: Papain family cysteine protease; IMG reference gene:2504825115 YP_004442308.1 KEGG: pmz:HMPREF0659_A7250 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825116 YP_004442309.1 COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; HAMAP: Glucosamine-6-phosphate deaminase; InterPro IPR018322:IPR006148; KEGG: pgn:PGN_0827 glucosamine-6-phosphate deaminase; PFAM: Glucosamine/galactosamine-6-phosphate isomerase; PRIAM: Glucosamine-6-phosphate deaminase; SPTR: Glucosamine-6-phosphate deaminase; TIGRFAM: Glucosamine-6-phosphate isomerase, subgroup; IMG reference gene:2504825117; PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; TIGRFAM: glucosamine-6-phosphate isomerase YP_004442310.1 COGs: COG0426 flavoprotein; InterPro IPR008254; KEGG: pgi:PG0804 flavodoxin; PFAM: Flavodoxin/nitric oxide synthase; SPTR: Metallo-beta-lactamase domain protein; IMG reference gene:2504825118; PFAM: Flavodoxin; Metallo-beta-lactamase superfamily YP_004442311.1 COGs: COG0682 Prolipoprotein diacylglyceryltransferase; HAMAP: Prolipoprotein diacylglyceryl transferase; InterPro IPR001640; KEGG: pgn:PGN_0829 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; SPTR: Prolipoprotein diacylglyceryl transferase; TIGRFAM: Prolipoprotein diacylglyceryl transferase; IMG reference gene:2504825119; PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase YP_004442312.1 InterPro IPR010190:IPR000683; KEGG: bvu:BVU_1659 oxidoreductase; PFAM: Oxidoreductase, N-terminal; SPTR: Diaminopimelate dehydrogenase; TIGRFAM: Diaminopimelate dehydrogenase; IMG reference gene:2504825120; PFAM: CoA binding domain; TIGRFAM: diaminopimelate dehydrogenase YP_004442313.1 COGs: COG2321 metalloprotease; InterPro IPR007343; KEGG: phe:Phep_4250 protein of unknown function zinc metallopeptidase PFAM: Protein of unknown function, zinc metallopeptidase SPTR: neutral zinc metallopeptidase; IMG reference gene:2504825121; PFAM: neutral zinc metallopeptidase YP_004442314.1 COGs: COG0321 Lipoate-protein ligase B; HAMAP: Octanoyltransferase; InterPro IPR000544:IPR004143; KEGG: pgn:PGN_1131 hydrolase; PFAM: Biotin/lipoate A/B protein ligase; PRIAM: Lipoyl(octanoyl) transferase; SPTR: Lipoyl(Octanoyl) transferase; TIGRFAM: Octanoyltransferase; IMG reference gene:2504825122; PFAM: Metallo-beta-lactamase superfamily; Biotin/lipoate A/B protein ligase family; TIGRFAM: lipoate-protein ligase B YP_004442315.1 COGs: COG0812 UDP-N-acetylmuramate dehydrogenase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; InterPro IPR003170:IPR006094:IPR011601; KEGG: pgi:PG1342 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal; PRIAM: UDP-N-acetylmuramate dehydrogenase; SPTR: UDP-N-acetylmuramate dehydrogenase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; IMG reference gene:2504825123; PFAM: FAD binding domain; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase YP_004442316.1 InterPro IPR007730; KEGG: pgi:PG1341 hypothetical protein; PFAM: Sporulation/cell division region, bacteria; SPTR: Sporulation and cell division repeat protein; IMG reference gene:2504825124; PFAM: Sporulation related domain YP_004442317.1 COGs: COG0632 Holliday junction resolvasome DNA-binding subunit; HAMAP: Holliday junction ATP-dependent DNA helicase ruvA; InterPro IPR000085:IPR003583:IPR013849:IPR011114; KEGG: pgn:PGN_0833 Holliday junction DNA helicase RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain III, C-terminal; DNA helicase, Holliday junction RuvA type, domain I, bacterial; SPTR: Holliday junction DNA helicase RuvA; TIGRFAM: Bacterial DNA recombination protein RuvA; IMG reference gene:2504825125; PFAM: RuvA, C-terminal domain; RuvA N terminal domain; TIGRFAM: Holliday junction DNA helicase, RuvA subunit YP_004442318.1 KEGG: pgn:PGN_0832 gliding motility protein SprA; SPTR: uncharacterized protein; IMG reference gene:2504825126 YP_004442319.1 InterPro IPR002379; KEGG: pgn:PGN_1758 V-type ATPase subunit K; PFAM: ATPase, F0/V0 complex, subunit C; SPTR: ATP synthase subunit C; IMG reference gene:2504825127; PFAM: ATP synthase subunit C YP_004442320.1 COGs: COG1269 H+-ATPase subunit I; InterPro IPR002490; KEGG: pgn:PGN_1759 V-type ATPase subunit I; PFAM: ATPase, V0/A0 complex, 116kDa subunit; SPTR: V-type ATPase 116kDa subunit family protein; IMG reference gene:2504825128; PFAM: V-type ATPase 116kDa subunit family YP_004442321.1 COGs: COG1394 H+-ATPase subunit D; InterPro IPR002699; KEGG: pgi:PG1805 V-type ATP synthase subunit D; PFAM: ATPase, V1/A1 complex, subunit D; SPTR: V-type ATPase, D subunit; TIGRFAM: ATPase, V1/A1 complex, subunit D; IMG reference gene:2504825129; PFAM: ATP synthase subunit D; TIGRFAM: H(+)-transporting ATP synthase, vacuolar type, subunit D YP_004442322.1 COGs: COG1156 H+-ATPase subunit B; InterPro IPR004100:IPR000194; KEGG: pgn:PGN_1761 V-type ATP synthase subunit B; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; SPTR: V-type sodium ATPase, B subunit; IMG reference gene:2504825130; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain YP_004442323.1 COGs: COG1155 H+-ATPase subunit A; InterPro IPR004100:IPR000194; KEGG: pdi:BDI_0827 V-type ATP synthase subunit A; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; SPTR: V-type sodium ATPase, catalytic A subunit; IMG reference gene:2504825131; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain YP_004442324.1 KEGG: pgn:PGN_1763 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825132; PFAM: Protein of unknown function (DUF2764) YP_004442325.1 KEGG: pgi:PG1801 v-type ATPase, subunit E, SPTR: V-type ATPase, subunit E; IMG reference gene:2504825133; PFAM: ATP synthase (E/31 kDa) subunit YP_004442326.1 SPTR: uncharacterized protein; IMG reference gene:2504825135; PFAM: Outer membrane protein Omp28 YP_004442327.1 KEGG: pgn:PGN_0852 immunoreactive 47 kDa antigen; SPTR: Leucine rich repeat protein; IMG reference gene:2504825136 YP_004442328.1 SPTR: Leucine rich repeat protein; IMG reference gene:2504825137 YP_004442329.1 InterPro IPR001584; KEGG: pgi:PG1420 ISPg5, transposase Orf2; PFAM: Integrase, catalytic core; SPTR: ISPg5, transposase Orf2; IMG reference gene:2504825138; PFAM: Integrase core domain YP_004442330.1 InterPro IPR002514; KEGG: nth:Nther_1507 transposase IS3/IS911 family protein; PFAM: Transposase IS3/IS911; SPTR: Transposase; IMG reference gene:2504825139; PFAM: Transposase YP_004442331.1 InterPro IPR003591:IPR001611; KEGG: cps:CPS_3882 leucine-rich repeat-containing protein; SPTR: Leucine rich repeat protein; IMG reference gene:2504825140 YP_004442332.1 COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: pgi:PG0295 DNA processing protein DprA, PFAM: DNA recombination-mediator protein A; SPTR: DNA protecting protein DprA; TIGRFAM: DNA recombination-mediator protein A; IMG reference gene:2504825141; PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA YP_004442333.1 COGs: COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain; InterPro IPR000728:IPR010918; KEGG: pgn:PGN_1666 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: phosphoribosylformylglycinamidine synthase; IMG reference gene:2504825142; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase, single chain form YP_004442334.1 COGs: COG2045 Phosphosulfolactate phosphohydrolase; InterPro IPR005238; KEGG: pgn:PGN_0011 hypothetical protein; PFAM: 2-phosphosulpholactate phosphatase; SPTR: 2-phosphosulfolactate phosphatase; IMG reference gene:2504825143; PFAM: 2-phosphosulpholactate phosphatase YP_004442335.1 COGs: COG1479 conserved hypothetical protein; InterPro IPR004919:IPR011089; KEGG: ctc:CTC00689 hypothetical protein; PFAM: Protein of unknown function DUF262; Protein of unknown function DUF1524 RloF; SPTR: uncharacterized protein; IMG reference gene:2504825144; PFAM: Protein of unknown function (DUF1524); Protein of unknown function DUF262 YP_004442336.1 COGs: COG0404 Glycine cleavage system T protein (aminomethyltransferase); HAMAP: Aminomethyltransferase; InterPro IPR006223:IPR006222:IPR013977; KEGG: pgn:PGN_0550 glycine cleavage system aminomethyltransferase T; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel; PRIAM: Aminomethyltransferase; SPTR: Aminomethyltransferase; TIGRFAM: Glycine cleavage system T protein; IMG reference gene:2504825145; PFAM: Aminomethyltransferase folate-binding domain; Glycine cleavage T-protein C-terminal barrel domain; TIGRFAM: glycine cleavage system T protein YP_004442337.1 KEGG: mtt:Ftrac_2163 TonB-dependent receptor; SPTR: TonB-dependent receptor; IMG reference gene:2504825146 YP_004442338.1 COGs: COG0136 aspartate-semialdehyde dehydrogenase; InterPro IPR005986:IPR000534:IPR012280; KEGG: pgi:PG0571 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation region; Semialdehyde dehydrogenase, NAD-binding; PRIAM: aspartate-semialdehyde dehydrogenase; SPTR: aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase, bacterial; IMG reference gene:2504825148; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) YP_004442339.1 KEGG: ppn:Palpr_2742 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825149 YP_004442340.1 COGs: COG0349 Ribonuclease D; InterPro IPR002562; KEGG: pgn:PGN_1596 probable 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease; SPTR: 3'-5' exonuclease; IMG reference gene:2504825150; PFAM: 3'-5' exonuclease YP_004442341.1 COGs: COG1092 SAM-dependent methyltransferase; KEGG: pgn:PGN_1597 hypothetical protein; SPTR: 23S rRNA m5C1962 methyltransferase; IMG reference gene:2504825151; PFAM: S-adenosylmethionine-dependent methyltransferase YP_004442342.1 COGs: COG0790 FOG: TPR repeat SEL1 subfamily; InterPro IPR006597; KEGG: gur:Gura_0781 Sel1 domain-containing protein; SPTR: Sel1 repeat protein; IMG reference gene:2504825152; PFAM: Sel1 repeat YP_004442343.1 COGs: COG1765 redox protein regulator of disulfide bond formation; InterPro IPR003718; KEGG: clj:CLJU_c40250 OsmC-like protein; PFAM: Peroxiredoxin, OsmC-like protein; SPTR: OsmC-like protein; IMG reference gene:2504825153; PFAM: OsmC-like protein YP_004442344.1 InterPro IPR013344:IPR000788; KEGG: pgi:PG1129 ribonucleotide reductase; PFAM: Ribonucleotide reductase large subunit, C-terminal; PRIAM: Ribonucleoside-diphosphate reductase; SPTR: Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; TIGRFAM: Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; IMG reference gene:2504825154; PFAM: Ribonucleotide reductase, all-alpha domain; Ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent YP_004442345.1 KEGG: hypothetical protein; SPTR: lipoprotein; IMG reference gene:2504825155 YP_004442346.1 COGs: COG0218 GTPase; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; InterPro IPR019987:IPR005225:IPR002917; KEGG: pgn:PGN_1615 ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein, HSR1-related; SPTR: Ribosome biogenesis GTP-binding protein YsxC; TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; Small GTP-binding protein; IMG reference gene:2504825156; PFAM: GTPase of unknown function; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC/EngB; small GTP-binding protein domain YP_004442347.1 InterPro IPR006675:IPR006674; KEGG: pgi:PG0651 HDIG domain-containing protein; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SPTR: HDIG domain protein; TIGRFAM: HDIG; IMG reference gene:2504825157; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG YP_004442348.1 COGs: COG2373 Large extracellular alpha-helical protein; InterPro IPR002890; KEGG: pgi:PG2204 hypothetical protein; PFAM: Alpha-2-macroglobulin, N-terminal; SPTR: uncharacterized protein; IMG reference gene:2504825158; PFAM: Alpha-2-macroglobulin family; MG2 domain YP_004442349.1 InterPro IPR019734:IPR013105:IPR001440; KEGG: pgn:PGN_1877 TPR domain protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide repeat protein; IMG reference gene:2504825159 YP_004442350.1 KEGG: bfs:BF0656 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825160 YP_004442351.1 COGs: COG0698 Ribose 5-phosphate isomerase RpiB; InterPro IPR004785:IPR003500; KEGG: pgn:PGN_1688 ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; PRIAM: Ribose-5-phosphate isomerase; SPTR: Ribose-5-phosphate isomerase B; TIGRFAM: Ribose/galactose isomerase; Ribose 5-phosphate isomerase B; IMG reference gene:2504825161; PFAM: Ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family YP_004442352.1 COGs: COG1945 conserved hypothetical protein; InterPro IPR002724; KEGG: pgn:PGN_1038 hypothetical protein; PFAM: Pyruvoyl-dependent arginine decarboxylase; SPTR: arginine decarboxylase, pyruvoyl-dependent; IMG reference gene:2504825162; PFAM: Pyruvoyl-dependent arginine decarboxylase (PvlArgDC); TIGRFAM: arginine decarboxylase, pyruvoyl-dependent YP_004442353.1 IMG reference gene:2504825163 YP_004442354.1 COGs: COG3189 conserved hypothetical protein; InterPro IPR007438; KEGG: lps:LPST_C2751 protein of hypothetical function DUF488; PFAM: Protein of unknown function DUF488; SPTR: MarR family transcriptional regulator; manually curated; IMG reference gene:2504825164; PFAM: Protein of unknown function, DUF488 YP_004442355.1 COGs: COG2461 conserved hypothetical protein; InterPro IPR000014:IPR007380:IPR012312:IPR013656; KEGG: afw:Anae109_1669 hemerythrin HHE cation binding domain-containing protein; PFAM: Protein of unknown function DUF438; Haemerythrin/HHE cation-binding motif; PAS fold-4; SPTR: Hemerythrin HHE cation binding domain protein; TIGRFAM: PAS; IMG reference gene:2504825165; PFAM: Family of unknown function (DUF438); Hemerythrin HHE cation binding domain; PAS fold YP_004442356.1 InterPro IPR015077; KEGG: ank:AnaeK_3309 hypothetical protein; PFAM: Domain of unknown function DUF1858; SPTR: uncharacterized protein; IMG reference gene:2504825166; PFAM: Domain of unknown function (DUF1858) YP_004442357.1 COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR004843:IPR008334; KEGG: pru:PRU_1666 5'-nucleotidase family protein; PFAM: 5'-Nucleotidase, C-terminal; Metallophosphoesterase; PRIAM: UDP-sugar diphosphatase; SPTR: 5'-nucleotidase, C-terminal domain protein; IMG reference gene:2504825167; PFAM: 5'-nucleotidase, C-terminal domain; Calcineurin-like phosphoesterase YP_004442358.1 COGs: COG1570 Exonuclease VII large subunit; InterPro IPR003753:IPR020579; KEGG: pgn:PGN_1225 exodeoxyribonuclease VII large subunit; PFAM: Exonuclease VII, large subunit, C-terminal; SPTR: Exodeoxyribonuclease VII, large subunit; TIGRFAM: Exonuclease VII, large subunit; IMG reference gene:2504825168; PFAM: Exonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit YP_004442359.1 COGs: COG2255 Holliday junction resolvasome helicase subunit; HAMAP: DNA helicase, Holliday junction RuvB type; InterProIPR004605:IPR003593:IPR008824:IPR003959:IPR 008823; KEGG: pgn:PGN_1482 Holliday junction DNA helicase RuvB; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: Holliday junction DNA helicase RuvB; TIGRFAM: DNA helicase, Holliday junction RuvB type; IMG reference gene:2504825169; PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit YP_004442360.1 COGs: COG5002 Signal transduction histidine kinase; InterPro IPR003661:IPR003594:IPR003660; KEGG: bvu:BVU_4096 two-component system sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; IMG reference gene:2504825170; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004442361.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: bfs:BF1590 two-component response regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Response regulator receiver domain protein; IMG reference gene:2504825171; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004442362.1 COGs: COG0704 Phosphate uptake regulator; InterPro IPR008170; KEGG: tal:Thal_0022 phosphate uptake regulator, PhoU; PFAM: PhoU; SPTR: PhoU family protein; IMG reference gene:2504825172; PFAM: PhoU domain YP_004442363.1 COGs: COG1117 ABC-type phosphate transport system ATPase component; InterPro IPR005670:IPR003593:IPR003439; KEGG: mlu:Mlut_01640 PstB; PFAM: ABC transporter-like; PRIAM: Phosphate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Phosphate ABC transporter, ATP-binding protein; TIGRFAM: Phosphate transport system permease protein 1; IMG reference gene:2504825173; PFAM: ABC transporter; TIGRFAM: phosphate ABC transporter, ATP-binding protein YP_004442364.1 COGs: COG0581 ABC-type phosphate transport system permease component; InterPro IPR005672:IPR000515; KEGG: phosphate ABC transporter membrane protein 2, PhoT family; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Phosphate ABC transporter, permease protein PstA; TIGRFAM: Phosphate transport system permease protein 2; IMG reference gene:2504825174; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA YP_004442365.1 COGs: COG0573 ABC-type phosphate transport system permease component; InterPro IPR011864:IPR000515; KEGG: opr:Ocepr_1834 phosphate ABC transporter membrane protein 1, PhoT family; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Phosphate ABC transporter, permease protein PstC; TIGRFAM: Phosphate ABC transporter, permease protein PstC; IMG reference gene:2504825175; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstC YP_004442366.1 COGs: COG0226 ABC-type phosphate transport system periplasmic component; InterPro IPR005673:IPR006059; KEGG: bth:BT_0009 phosphate-binding periplasmic protein precursor, ABC transporter; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: Phosphate ABC transporter, phosphate-binding protein PstS; TIGRFAM: Periplasmic phosphate binding protein; IMG reference gene:2504825176; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: phosphate ABC transporter, phosphate-binding protein YP_004442367.1 COGs: COG0360 Ribosomal protein S6; HAMAP: Ribosomal protein S6, bacterial-like; InterPro IPR000529:IPR020814; KEGG: pgn:PGN_0639 30S ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like; SPTR: Ribosomal protein S6; TIGRFAM: Ribosomal protein S6; IMG reference gene:2504825177; PFAM: Ribosomal protein S6; TIGRFAM: ribosomal protein S6 YP_004442368.1 COGs: COG0238 Ribosomal protein S18; HAMAP: 30S ribosomal protein S18; InterPro IPR001648; KEGG: pgn:PGN_0640 30S ribosomal protein S18; PFAM: Ribosomal protein S18; SPTR: Ribosomal protein S18; TIGRFAM: Ribosomal protein S18; IMG reference gene:2504825178; PFAM: Ribosomal protein S18; TIGRFAM: ribosomal protein S18 YP_004442369.1 COGs: COG0359 Ribosomal protein L9; HAMAP: Ribosomal protein L9, bacteria/chloroplast; InterPro IPR020594:IPR020070:IPR020069; KEGG: pgn:PGN_0641 50S ribosomal protein L9; PFAM: Ribosomal protein L9, N-terminal; Ribosomal protein L9, C-terminal; SPTR: Ribosomal protein L9; TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; IMG reference gene:2504825179; PFAM: Ribosomal protein L9, N-terminal domain; Ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9 YP_004442370.1 COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterPro IPR000212; KEGG: pgi:PG2072 UvrD/REP helicase domain-containing protein; PFAM: DNA helicase, UvrD/REP type; SPTR: UvrD/REP helicase; IMG reference gene:2504825180; PFAM: UvrD/REP helicase YP_004442371.1 SPTR: membrane protein; IMG reference gene:2504825181 YP_004442372.1 COGs: COG1995 Pyridoxal phosphate biosynthesis protein; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; InterPro IPR005255; KEGG: pgn:PGN_2055 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; PRIAM: 4-hydroxythreonine-4-phosphate dehydrogenase; SPTR: 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; IMG reference gene:2504825182; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase YP_004442373.1 KEGG: pgi:PG2066 lipoprotein; SPTR: lipoprotein; IMG reference gene:2504825183 YP_004442374.1 InterPro IPR002059; PFAM: Cold-shock protein, DNA-binding; SPTR: Cold-shock DNA-binding domain protein; IMG reference gene:2504825184 YP_004442375.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR000531; KEGG: dfe:Dfer_2699 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; IMG reference gene:2504825185 YP_004442376.1 KEGG: TonB-dependent receptor; SPTR: uncharacterized protein; IMG reference gene:2504825186 YP_004442377.1 InterPro IPR001647; KEGG: pgi:PG1501 TetR family transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; IMG reference gene:2504825187; PFAM: Bacterial regulatory proteins, tetR family YP_004442378.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792; KEGG: cpi:Cpin_5158 transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; SPTR: Transcriptional regulator, LuxR family; IMG reference gene:2504825188; PFAM: Bacterial regulatory proteins, luxR family YP_004442379.1 COGs: COG0576 Molecular chaperone GrpE (heat shock protein); HAMAP: GrpE nucleotide exchange factor; InterPro IPR000740; KEGG: pgi:PG1775 GrpE protein; PFAM: GrpE nucleotide exchange factor; SPTR: Co-chaperone GrpE; IMG reference gene:2504825189; PFAM: GrpE YP_004442380.1 COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; HAMAP: Chaperone protein dnaJ; InterPro IPR012724:IPR001623:IPR001305:IPR002939; KEGG: pgn:PGN_1716 chaperone protein DnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; Heat shock protein DnaJ, cysteine-rich region; SMART: Heat shock protein DnaJ, N-terminal; SPTR: Chaperone protein DnaJ; TIGRFAM: Chaperone DnaJ; IMG reference gene:2504825190; PFAM: DnaJ central domain (4 repeats); DnaJ C terminal region; DnaJ domain; TIGRFAM: chaperone protein DnaJ YP_004442381.1 KEGG: pgn:PGN_1456 hypothetical protein; SPTR: membrane protein; IMG reference gene:2504825191 YP_004442382.1 InterPro IPR002591; KEGG: pgi:PG0515 hypothetical protein; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; SPTR: Type I phosphodiesterase/nucleotide pyrophosphatase; IMG reference gene:2504825192; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase YP_004442383.1 COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase); HAMAP: Protein translocase subunit secA; InterProIPR000185:IPR011115:IPR011130:IPR001650:IPR 011116:IPR004027; KEGG: pgi:PG0514 preprotein translocase subunit SecA; PFAM: SecA DEAD-like; SecA preprotein cross-linking region; DNA/RNA helicase, C-terminal; SecA Wing/Scaffold; SEC-C motif; SPTR: Preprotein translocase, SecA subunit; TIGRFAM: SecA protein; IMG reference gene:2504825193; PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; SEC-C motif; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, SecA subunit YP_004442384.1 COGs: COG1561 Uncharacterized stress-induced protein; InterPro IPR005229:IPR013527:IPR013551; KEGG: pmz:HMPREF0659_A5247 hypothetical protein; PFAM: YicC-like, N-terminal; Domain of unknown function DUF1732; SPTR: TIGR00255 family protein; TIGRFAM: Conserved hypothetical protein CHP00255; IMG reference gene:2504825194; PFAM: YicC-like family, N-terminal region; Domain of unknown function (DUF1732); TIGRFAM: TIGR00255 family protein YP_004442385.1 COGs: COG0194 Guanylate kinase; HAMAP: Guanylate kinase, sub-group; InterPro IPR017665:IPR008145:IPR008144; KEGG: pdi:BDI_0156 guanylate kinase; PFAM: Guanylate kinase; PRIAM: Guanylate kinase; SMART: Guanylate kinase/L-type calcium channel region; SPTR: Guanylate kinase; TIGRFAM: Guanylate kinase, sub-group; IMG reference gene:2504825195; PFAM: Guanylate kinase; TIGRFAM: guanylate kinase YP_004442386.1 COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: pgi:PG2095 lipoprotein; PFAM: Bacterial surface antigen (D15); SPTR: Outer membrane protein, OMP85 family; IMG reference gene:2504825196; PFAM: Surface antigen YP_004442387.1 InterPro IPR007452; KEGG: pgi:PG2096 hypothetical protein; PFAM: Protein of unknown function DUF490; SPTR: uncharacterized protein; IMG reference gene:2504825197; PFAM: Family of unknown function (DUF490) YP_004442388.1 InterPro IPR002559; KEGG: dal:Dalk_2552 transposase IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase, IS4 family; IMG reference gene:2504825198; PFAM: Transposase DDE domain YP_004442389.1 KEGG: pgi:PG0236 hypothetical protein; SPTR: lipoprotein; IMG reference gene:2504825199 YP_004442390.1 SPTR: uncharacterized protein; IMG reference gene:2504825201 YP_004442391.1 COGs: COG4690 Dipeptidase; InterPro IPR005322; KEGG: pmz:HMPREF0659_A6300 peptidase family C69; PFAM: Peptidase C69, dipeptidase A; SPTR: Peptidase, C69 family; IMG reference gene:2504825202; PFAM: Peptidase family C69 YP_004442392.1 InterPro IPR001123; KEGG: pgn:PGN_0861 hypothetical protein; PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: amino acid exporter; IMG reference gene:2504825203; PFAM: LysE type translocator YP_004442393.1 COGs: COG2855 membrane protein; InterPro IPR004630:IPR018383; KEGG: pdi:BDI_1819 transmembrane protein; PFAM: Uncharacterised protein family UPF0324, prokaryote; SPTR: membrane protein; TIGRFAM: Uncharacterised protein family UPF0324, bacteria; IMG reference gene:2504825204; PFAM: Conserved hypothetical protein 698; TIGRFAM: conserved hypothetical integral membrane protein YP_004442394.1 COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: pru:PRU_2506 outer membrane receptor (OMR) family transporter; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; IMG reference gene:2504825205; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_004442395.1 KEGG: cpi:Cpin_3942 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825206 YP_004442396.1 COGs: COG0775 Nucleoside phosphorylase; InterPro IPR010049:IPR000845; KEGG: bvu:BVU_0894 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; PFAM: Nucleoside phosphorylase; PRIAM: adenosylhomocysteine nucleosidase; SPTR: MTA/SAH nucleosidase; TIGRFAM: MTA/SAH nucleosidase; IMG reference gene:2504825207; PFAM: Phosphorylase superfamily; TIGRFAM: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_004442397.1 COGs: COG0206 Cell division GTPase; InterPro IPR000158:IPR003008:IPR018316; KEGG: pgn:PGN_0631 cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; SPTR: Cell division protein FtsZ; TIGRFAM: Cell division protein FtsZ, N-terminal; IMG reference gene:2504825208; PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ YP_004442398.1 COGs: COG0849 Actin-like ATPase involved in cell division; InterPro IPR020823:IPR003494; KEGG: pgi:PG0583 cell division protein FtsA; PFAM: Cell division protein FtsA domain; SPTR: Cell division protein FtsA; TIGRFAM: Cell division protein family FtsA; IMG reference gene:2504825209; PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA YP_004442399.1 KEGG: pgn:PGN_0629 cell division protein FtsQ; SPTR: uncharacterized protein; IMG reference gene:2504825210 YP_004442400.1 COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; InterPro IPR005758:IPR000713:IPR013221:IPR004101; KEGG: pgn:PGN_0628 UDP-N-acetylmuramate--L-alanine ligase; PFAM: Mur ligase, C-terminal; Mur ligase, N-terminal; Mur ligase, central; PRIAM: UDP-N-acetylmuramate--L-alanine ligase; SPTR: UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate-alanine ligase; IMG reference gene:2504825211; PFAM: Mur ligase family, catalytic domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate--alanine ligase YP_004442401.1 COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; HAMAP:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; InterPro IPR006009:IPR004276:IPR007235; KEGG: pgi:PG0580 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase, family 28, C-terminal; Glycosyl transferase, family 28; SPTR: Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; TIGRFAM: N-acetylglucosaminyltransferase, MurG; IMG reference gene:2504825212; PFAM: Glycosyltransferase family 28 N-terminal domain; Glycosyltransferase family 28 C-terminal domain; TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase YP_004442402.1 InterPro IPR002514; KEGG: nth:Nther_1507 transposase IS3/IS911 family protein; PFAM: Transposase IS3/IS911; SPTR: Transposase IS3/family protein; IMG reference gene:2504825213; PFAM: Transposase YP_004442403.1 InterPro IPR001584; KEGG: pgi:PG1420 ISPg5, transposase Orf2; PFAM: Integrase, catalytic core; SPTR: ISPg5, transposase Orf2; IMG reference gene:2504825214; PFAM: Integrase core domain YP_004442404.1 InterPro IPR001387; KEGG: pgn:PGN_0907 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: DNA-binding helix-turn-helix protein; IMG reference gene:2504825215; PFAM: Helix-turn-helix YP_004442405.1 COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase; InterPro IPR008333:IPR001433:IPR019480; KEGG: pgi:PG1064 dihydroorotate dehydrogenase, PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; SPTR: dihydroorotate dehydrogenase, electron transfer subunit; IMG reference gene:2504825216; PFAM: Oxidoreductase FAD-binding domain; Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Oxidoreductase NAD-binding domain YP_004442406.1 COGs: COG0167 Dihydroorotate dehydrogenase; InterPro IPR005720:IPR012135; KEGG: ppn:Palpr_0736 dihydroorotate oxidase B, catalytic subunit; PFAM: Dihydroorotate dehydrogenase, class 1/ 2; SPTR: Dihydroorotate oxidase, catalytic subunit; TIGRFAM: Dihydroorotate dehydrogenase, class 1, core; IMG reference gene:2504825217; PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein YP_004442407.1 KEGG: pgi:PG1881 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825218 YP_004442408.1 COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase; InterPro IPR004136; KEGG: bvu:BVU_2790 dioxygenase; PFAM: 2-nitropropane dioxygenase, NPD; SPTR: enoyl-[acyl-carrier-protein] reductase II; IMG reference gene:2504825219; PFAM: 2-nitropropane dioxygenase YP_004442409.1 COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; HAMAP: Dihydrodipicolinate synthase; InterPro IPR005263:IPR002220; KEGG: pgn:PGN_1996 dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase; SPTR: Dihydrodipicolinate synthase; TIGRFAM: Dihydrodipicolinate synthase subfamily; IMG reference gene:2504825220; PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: dihydrodipicolinate synthase YP_004442410.1 COGs: COG1195 Recombinational DNA repair ATPase (RecF pathway); HAMAP: DNA replication and repair protein recF; InterPro IPR001238:IPR003395; KEGG: pgi:PG0398 RecF protein; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: DNA replication and repair protein RecF; TIGRFAM: DNA-binding, RecF; IMG reference gene:2504825221; TIGRFAM: recF protein YP_004442411.1 COGs: COG1932 Phosphoserine aminotransferase; HAMAP: Phosphoserine aminotransferase; InterPro IPR003248:IPR000192; KEGG: pgn:PGN_0612 phosphoserine aminotransferase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Phosphoserine transaminase; SPTR: Phosphoserine transaminase; TIGRFAM: Phosphoserine aminotransferase; IMG reference gene:2504825222; PFAM: Aminotransferase class-V; TIGRFAM: phosphoserine aminotransferase YP_004442412.1 COGs: COG1052 Lactate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140; KEGG: bvu:BVU_3242 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; PRIAM: Phosphoglycerate dehydrogenase; SPTR: D-phosphoglycerate dehydrogenase; IMG reference gene:2504825223; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004442413.1 COGs: COG4198 conserved hypothetical protein; InterPro IPR008323; KEGG: pdi:BDI_0507 hypothetical protein; PFAM: Uncharacterised conserved protein UCP033563; SPTR: uncharacterized protein; IMG reference gene:2504825224; PFAM: Protein of unknown function (DUF1015) YP_004442414.1 COGs: COG0441 Threonyl-tRNA synthetase; InterProIPR002320:IPR004095:IPR012947:IPR002314:IPR 004154; KEGG: pgn:PGN_0962 threonyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Threonyl/alanyl tRNA synthetase, SAD; TGS; Anticodon-binding; SPTR: Threonine--tRNA ligase; TIGRFAM: Threonyl-tRNA synthetase, class IIa; IMG reference gene:2504825226; PFAM: Anticodon binding domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TGS domain; TIGRFAM: threonyl-tRNA synthetase YP_004442415.1 COGs: COG0290 Translation initiation factor 3 (IF-3); HAMAP: Translation initiation factor IF-3; InterPro IPR001288:IPR019814:IPR019815; KEGG: pgn:PGN_0963 translation initiation factor IF-3; PFAM: Translation initiation factor 3, C-terminal; Translation initiation factor 3, N-terminal; SPTR: Translation initiation factor IF-3; TIGRFAM: Translation initiation factor 3; IMG reference gene:2504825227; PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3 YP_004442416.1 HAMAP: Ribosomal protein L35; InterPro IPR001706; KEGG: rbi:RB2501_12397 50S ribosomal protein L35; PFAM: Ribosomal protein L35; SPTR: 50S ribosomal protein L35; TIGRFAM: Ribosomal protein L35; IMG reference gene:2504825228; PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35 YP_004442417.1 COGs: COG0292 Ribosomal protein L20; HAMAP: Ribosomal protein L20; InterPro IPR005813; KEGG: pgn:PGN_0965 50S ribosomal protein L20; PFAM: Ribosomal protein L20; SPTR: Ribosomal protein L20; TIGRFAM: Ribosomal protein L20; IMG reference gene:2504825229; PFAM: Ribosomal protein L20; TIGRFAM: ribosomal protein L20 YP_004442418.1 COGs: COG0015 adenylosuccinate lyase; InterPro IPR004769:IPR000362:IPR013539; KEGG: pgi:PG1123 adenylosuccinate lyase; PFAM: adenylosuccinate lyase C-terminal; Fumarate lyase; PRIAM: adenylosuccinate lyase; SPTR: adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; IMG reference gene:2504825230; PFAM: Lyase; adenylosuccinate lyase C-terminal; TIGRFAM: adenylosuccinate lyase YP_004442419.1 COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterPro IPR000748:IPR002942:IPR006145; KEGG: pgn:PGN_1219 ribosomal large subunit pseudouridine synthase B; PFAM: RNA-binding S4; Pseudouridine synthase, RsuA and RluB/C/D/E/F; SMART: RNA-binding S4; SPTR: Pseudouridylate synthase; TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; IMG reference gene:2504825231; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase YP_004442420.1 COGs: COG0017 Aspartyl/asparaginyl-tRNA synthetase; HAMAP: Asparaginyl-tRNA synthetase; InterPro IPR004522:IPR004365:IPR004364; KEGG: pgi:PG1121 asparaginyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: Asparagine--tRNA ligase; SPTR: Asparagine--tRNA ligase; TIGRFAM: Asparaginyl-tRNA synthetase, class IIb; IMG reference gene:2504825232; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: asparaginyl-tRNA synthetase YP_004442421.1 COGs: COG0101 Pseudouridylate synthase; HAMAP: Pseudouridine synthase I, TruA; InterPro IPR001406:IPR020097; KEGG: pdi:BDI_1936 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; SPTR: tRNA pseudouridine synthase A; TIGRFAM: Pseudouridine synthase I, TruA; IMG reference gene:2504825233; PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I YP_004442422.1 COGs: COG0550 Topoisomerase IA; InterProIPR005733:IPR006154:IPR003601:IPR003602:IPR 006171:IPR013497; KEGG: pgi:PG0754 DNA topoisomerase I; PFAM: DNA topoisomerase, type IA, central; Toprim domain; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; SPTR: DNA topoisomerase I; TIGRFAM: DNA topoisomerase I, bacterial-type; IMG reference gene:2504825234; PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial YP_004442423.1 COGs: COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase gamma subunit; InterPro IPR019752; KEGG: pgn:PGN_1756 2-oxoglutarate oxidoreductase gamma subunit; PFAM: Pyruvate/ketoisovalerate oxidoreductase; SPTR: 2-oxoacid:ferredoxin/flavodoxin oxidoreductase, gamma subunit; IMG reference gene:2504825235; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family YP_004442424.1 COGs: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase beta subunit; InterPro IPR011766; KEGG: pdi:BDI_1392 ketoisovalerate oxidoreductase subunit VorA; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: 2-oxoglutarate synthase; SPTR: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; IMG reference gene:2504825236; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_004442425.1 COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR002880; KEGG: pdi:BDI_1391 2-ketoisovalerate ferredoxin reductase; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; PRIAM: 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin); SPTR: 3-methyl-2-oxobutanoate dehydrogenase (Ferredoxin); IMG reference gene:2504825237; PFAM: domain YP_004442426.1 InterPro IPR001450; KEGG: pgn:PGN_1752 ferredoxin 4Fe-4S; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: 4Fe-4S binding domain protein; manually curated; IMG reference gene:2504825238; PFAM: 4Fe-4S binding domain YP_004442427.1 SPTR: uncharacterized protein; IMG reference gene:2504825239 YP_004442428.1 IMG reference gene:2504825240 YP_004442429.1 InterPro IPR019734:IPR013105:IPR001440:IPR011717; KEGG: pgn:PGN_0464 hypothetical protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; SPTR: Tetratricopeptide repeat protein; IMG reference gene:2504825241; PFAM: Tetratricopeptide repeat YP_004442430.1 SPTR: uncharacterized protein; IMG reference gene:2504825242 YP_004442431.1 COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR003736:IPR013200:IPR006683; KEGG: pgi:PG1653 hypothetical protein; PFAM: HAD superfamily hydrolase-like, type 3; Thioesterase superfamily; SPTR: Conserved domain protein; TIGRFAM: Phenylacetic acid degradation-related protein; IMG reference gene:2504825243; PFAM: Thioesterase superfamily; haloacid dehalogenase-like hydrolase; TIGRFAM: uncharacterized domain 1 YP_004442432.1 COGs: COG2195 Di- and tripeptidase; InterPro IPR010161:IPR002933:IPR011650; KEGG: pgi:PG0445 peptidase T; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: Tripeptide aminopeptidase; SPTR: Peptidase T; TIGRFAM: Peptidase M20B, tripeptide aminopeptidase; IMG reference gene:2504825244; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: peptidase T YP_004442433.1 SPTR: lipoprotein; IMG reference gene:2504825245 YP_004442434.1 COGs: COG1597 Sphingosine kinase; InterPro IPR005218:IPR001206; KEGG: pgi:PG1348 hypothetical protein; PFAM: Diacylglycerol kinase, catalytic region; SMART: Diacylglycerol kinase, catalytic region; SPTR: Lipid kinase, YegS/Rv2252/BmrU family; TIGRFAM: Conserved hypothetical protein CHP00147; IMG reference gene:2504825246; PFAM: Diacylglycerol kinase catalytic domain; TIGRFAM: lipid kinase, YegS/Rv2252/BmrU family YP_004442435.1 COGs: COG0780 Enzyme related to GTP cyclohydrolase I; HAMAP: Nitrile oxidoreductase, NADPH-dependent, QueF; InterPro IPR016856:IPR020602; KEGG: pgn:PGN_1136 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; PRIAM: PreQ(1) synthase; SPTR: PreQ(1) synthase; TIGRFAM: Nitrile oxidoreductase, NADPH-dependent, QueF; IMG reference gene:2504825247; PFAM: GTP cyclohydrolase I; TIGRFAM: 7-cyano-7-deazaguanine reductase YP_004442436.1 COGs: COG1875 ATPase related to phosphate starvation-inducible protein PhoH; InterPro IPR006596:IPR003714; KEGG: pdi:BDI_0770 PhoH-like protein; PFAM: PhoH-like protein; SMART: Nucleotide binding protein, PINc; SPTR: PhoH family protein; IMG reference gene:2504825248; PFAM: PhoH-like protein YP_004442437.1 COGs: COG1109 Phosphomannomutase; InterPro IPR005844:IPR005845; KEGG: pgn:PGN_1955 phosphomannomutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; SPTR: Phosphoglucomutase; IMG reference gene:2504825249; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YP_004442438.1 KEGG: pgi:PG0759 TPR domain-containing protein; SPTR: uncharacterized protein; IMG reference gene:2504825250 YP_004442439.1 COGs: COG0126 3-phosphoglycerate kinase; HAMAP: Phosphoglycerate kinase; InterPro IPR001576; KEGG: pdi:BDI_0672 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; PRIAM: Phosphoglycerate kinase; SPTR: Phosphoglycerate kinase; IMG reference gene:2504825251; PFAM: Phosphoglycerate kinase YP_004442440.1 InterPro IPR000182; KEGG: bfs:BF0141 acetyltransferase protein; PFAM: GCN5-related N-acetyltransferase; SPTR: acetyltransferase, GNAT family; IMG reference gene:2504825252 YP_004442441.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593:IPR001140:IPR003439; KEGG: ssm:Spirs_3512 ABC transporter related protein; PFAM: ABC transporter-like; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; IMG reference gene:2504825253; PFAM: ABC transporter transmembrane region; ABC transporter YP_004442442.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593:IPR001140:IPR003439; KEGG: mpi:Mpet_0451 ABC transporter-like protein; PFAM: ABC transporter-like; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; IMG reference gene:2504825254; PFAM: ABC transporter transmembrane region; ABC transporter YP_004442443.1 IMG reference gene:2504825255 YP_004442444.1 COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006097:IPR006096; KEGG: pgn:PGN_1367 glutamate dehydrogenase; PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation region; PRIAM: Glutamate dehydrogenase; SPTR: Glutamate dehydrogenase, NAD-specific; IMG reference gene:2504825256; PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YP_004442445.1 COGs: COG0692 Uracil DNA glycosylase; HAMAP: Uracil-DNA glycosylase; InterPro IPR002043:IPR005122; KEGG: pgn:PGN_0342 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase-like; SPTR: Uracil-DNA glycosylase; TIGRFAM: Uracil-DNA glycosylase; IMG reference gene:2504825257; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase YP_004442446.1 COGs: COG0427 acetyl-CoA hydrolase; InterPro IPR003702; KEGG: pgi:PG1956 4-hydroxybutyrate CoA-transferase; PFAM: acetyl-CoA hydrolase/transferase; SPTR: 4-hydroxybutyrate coenzyme A transferase; IMG reference gene:2504825258; PFAM: acetyl-CoA hydrolase/transferase N-terminal domain YP_004442447.1 COGs: COG1979 Uncharacterized oxidoreductase Fe-dependent alcohol dehydrogenase family; InterPro IPR001670; KEGG: bth:BT_0535 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type; PRIAM: Alcohol dehydrogenase (NADP(+)); SPTR: alcohol dehydrogenase 3; IMG reference gene:2504825259; PFAM: Iron-containing alcohol dehydrogenase YP_004442448.1 COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: bth:BT_0540 exopolyphosphatase; PFAM: Ppx/GppA phosphatase; SPTR: Ppx/GppA phosphatase family protein; IMG reference gene:2504825260; PFAM: Ppx/GppA phosphatase family YP_004442449.1 COGs: COG0855 Polyphosphate kinase; InterPro IPR003414; KEGG: bfs:BF2668 polyphosphate kinase; PFAM: Polyphosphate kinase; PRIAM: Polyphosphate kinase; SPTR: Polyphosphate kinase 1; TIGRFAM: polyphosphate kinase 1; IMG reference gene:2504825261; PFAM: Polyphosphate kinase; TIGRFAM: polyphosphate kinase 1 YP_004442450.1 COGs: COG1004 UDP-glucose 6-dehydrogenase; InterPro IPR017476:IPR001732:IPR014026:IPR014027; KEGG: pdi:BDI_0441 uridine diphosphate glucose dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: Nucleotide sugar dehydrogenase; TIGRFAM: Nucleotide sugar dehydrogenase; IMG reference gene:2504825262; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase YP_004442451.1 COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH); InterPro IPR004655:IPR013751:IPR013747; KEGG: pgi:PG2141 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase I; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase 3; TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); IMG reference gene:2504825263; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III YP_004442452.1 COGs: COG1159 GTPase; HAMAP: GTP-binding protein Era; InterPro IPR005225:IPR005662:IPR002917:IPR004044; KEGG: pgn:PGN_0190 GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2; SPTR: Ribosome biogenesis GTPase Era; TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; IMG reference gene:2504825264; PFAM: KH domain; GTPase of unknown function; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain YP_004442453.1 COGs: COG1160 GTPase; HAMAP: GTP-binding, EngA; InterPro IPR005225:IPR016484:IPR002917; KEGG: pgn:PGN_0191 GTP-binding protein EngA; PFAM: GTP-binding protein, HSR1-related; SPTR: Ribosome biogenesis GTPase Der; TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; IMG reference gene:2504825265; PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein domain YP_004442454.1 COGs: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; InterPro IPR001228; KEGG: pgn:PGN_0841 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; PRIAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; SPTR: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; IMG reference gene:2504825266; PFAM: Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_004442455.1 COGs: COG1200 RecG-like helicase; InterPro IPR014001:IPR001650:IPR004365:IPR011545; KEGG: pgn:PGN_1613 ATP-dependent DNA helicase RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent DNA helicase RecG; IMG reference gene:2504825267; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; OB-fold nucleic acid binding domain; TIGRFAM: ATP-dependent DNA helicase RecG YP_004442456.1 COGs: COG2986 Histidine ammonia-lyase; InterPro IPR005921:IPR001106; KEGG: pgn:PGN_1638 histidine ammonia-lyase; PFAM: Phenylalanine/histidine ammonia-lyase; PRIAM: Histidine ammonia-lyase; SPTR: Histidine ammonia-lyase; TIGRFAM: Histidine ammonia-lyase; IMG reference gene:2504825268; PFAM: Phenylalanine and histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase YP_004442457.1 COGs: COG3404 Methenyl tetrahydrofolate cyclohydrolase; InterPro IPR007044; KEGG: pgn:PGN_1637 methenyltetrahydrofolate cyclohydrolase; PFAM: Cyclodeaminase/cyclohydrolase; PRIAM: Glutamate formimidoyltransferase; SPTR: methenyltetrahydrofolate cyclohydrolase; IMG reference gene:2504825269; PFAM: Formiminotransferase-cyclodeaminase YP_004442458.1 COGs: COG1228 Imidazolonepropionase and related amidohydrolase; HAMAP: Imidazolonepropionase; InterPro IPR005920:IPR006680; KEGG: pgi:PG0328 imidazolonepropionase; PFAM: Amidohydrolase 1; PRIAM: Imidazolonepropionase; SPTR: Imidazolonepropionase; TIGRFAM: Imidazolonepropionase; IMG reference gene:2504825270; PFAM: Amidohydrolase family; TIGRFAM: imidazolonepropionase YP_004442459.1 InterPro IPR008815; KEGG: afn:Acfer_0577 S23 ribosomal protein; PFAM: 23S rRNA-associated protein; SPTR: TIGR02436 family protein; manually curated; IMG reference gene:2504825271; PFAM: S23 ribosomal protein; TIGRFAM: TIGR02436 family protein YP_004442460.1 COGs: COG3643 Glutamate formiminotransferase; InterPro IPR004227:IPR012886:IPR013802; KEGG: pgn:PGN_1633 formiminotransferase-cyclodeaminase; PFAM: Formiminotransferase, N-terminal; Formiminotransferase, C-terminal; PRIAM: Glutamate formimidoyltransferase; SPTR: Glutamate formimidoyltransferase; TIGRFAM: Formiminotransferase; IMG reference gene:2504825272; PFAM: Formiminotransferase domain, N-terminal subdomain; Formiminotransferase domain; TIGRFAM: glutamate formiminotransferase YP_004442461.1 COGs: COG0787 Alanine racemase; HAMAP: Alanine racemase; InterProIPR000821:IPR000713:IPR013221:IPR001608:IPR 011079; KEGG: pgn:PGN_1194 bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; PFAM: Alanine racemase, C-terminal; Alanine racemase, N-terminal; Mur ligase, central; Mur ligase, N-terminal; PRIAM:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase., Alanine racemase; SPTR: Alanine racemase; TIGRFAM: Alanine racemase; IMG reference gene:2504825273; PFAM: Alanine racemase, C-terminal domain; Alanine racemase, N-terminal domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; alanine racemase YP_004442462.1 InterPro IPR014982; KEGG: cpi:Cpin_2931 GSCFA domain protein; PFAM: GSCFA; SPTR: GSCFA family protein; IMG reference gene:2504825274; PFAM: GSCFA family YP_004442463.1 SPTR: lipoprotein; IMG reference gene:2504825275 YP_004442464.1 SPTR: uncharacterized protein; IMG reference gene:2504825276 YP_004442465.1 SPTR: lipoprotein; IMG reference gene:2504825277 YP_004442466.1 SPTR: lipoprotein; IMG reference gene:2504825278 YP_004442467.1 KEGG: pgn:PGN_1159 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825279 YP_004442468.1 COGs: COG1893 Ketopantoate reductase; InterPro IPR003710:IPR013332:IPR013752; KEGG: pgn:PGN_2071 probable ketopantoate reductase ApbA/PanE; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal; PRIAM: 2-dehydropantoate 2-reductase; SPTR: 2-dehydropantoate 2-reductase; TIGRFAM: Ketopantoate reductase ApbA/PanE; IMG reference gene:2504825280; PFAM: Ketopantoate reductase PanE/ApbA; Ketopantoate reductase PanE/ApbA C terminal; TIGRFAM: 2-dehydropantoate 2-reductase YP_004442469.1 COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR006258:IPR013027:IPR004099; KEGG: pgn:PGN_0826 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; PRIAM: Dihydrolipoyl dehydrogenase; SPTR: Dihydrolipoyl dehydrogenase; TIGRFAM: Dihydrolipoamide dehydrogenase; IMG reference gene:2504825281; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase YP_004442470.1 COGs: COG0588 Phosphoglycerate mutase 1; HAMAP: Phosphoglycerate mutase 1; InterPro IPR005952:IPR013078; KEGG: pgn:PGN_0243 phosphoglyceromutase; PFAM: Phosphoglycerate mutase; PRIAM: Bisphosphoglycerate mutase; SPTR: Phosphoglycerate mutase 1 family; TIGRFAM: Phosphoglycerate mutase 1; IMG reference gene:2504825282; PFAM: Phosphoglycerate mutase family; TIGRFAM: phosphoglycerate mutase, BPG-dependent, family 1 YP_004442471.1 KEGG: pgi:PG2144 hypothetical protein; SPTR: membrane protein; IMG reference gene:2504825283; PFAM: Protein of unknown function (DUF2723) YP_004442472.1 SPTR: uncharacterized protein; IMG reference gene:2504825284 YP_004442473.1 SPTR: uncharacterized protein; IMG reference gene:2504825285 YP_004442474.1 KEGG: pmz:HMPREF0659_A7063 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825287 YP_004442475.1 InterPro IPR001845; KEGG: bvu:BVU_4181 transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: ArsR family transcriptional regulator; manually curated; IMG reference gene:2504825288; PFAM: Bacterial regulatory protein, arsR family YP_004442476.1 KEGG: pmz:HMPREF0659_A7367 redox-active disulfide protein 2; SPTR: redox-active disulfide protein 2; manually curated; IMG reference gene:2504825289; TIGRFAM: small redox-active disulfide protein 2 YP_004442477.1 KEGG: bvu:BVU_4183 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825290 YP_004442478.1 InterPro IPR003834; KEGG: pmz:HMPREF0659_A7365 cytochrome c biogenesis protein transmembrane region; PFAM: Cytochrome c assembly protein, transmembrane region; SPTR: uncharacterized protein; IMG reference gene:2504825291; PFAM: Cytochrome C biogenesis protein transmembrane region YP_004442479.1 InterPro IPR010712; KEGG: pmz:HMPREF0659_A7364 arsenical resistance operon trans-acting repressor ArsD; PFAM: Arsenical resistance operon trans-acting repressor ArsD; SPTR: uncharacterized protein; IMG reference gene:2504825292; PFAM: Arsenical resistance operon trans-acting repressor ArsD YP_004442480.1 COGs: COG0003 ATPase involved in chromosome partitioning; InterPro IPR003348:IPR003593; KEGG: pmz:HMPREF0659_A7363 arsenite-transporting ATPase; PFAM: ATPase, anion-transporting; PRIAM: Arsenite-transporting ATPase; SPTR: uncharacterized protein; TIGRFAM: ATPase, anion-transporting; IMG reference gene:2504825293; PFAM: Anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA YP_004442481.1 COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR017867; KEGG: pmz:HMPREF0659_A7362 arsenate reductase (thioredoxin); PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: Arsenate reductase; IMG reference gene:2504825294; PFAM: Low molecular weight phosphotyrosine protein phosphatase YP_004442482.1 COGs: COG0798 Arsenite efflux pump ACR3 and related permease; InterPro IPR004706:IPR002657; KEGG: pmz:HMPREF0659_A7361 arsenical-resistance protein; PFAM: Bile acid:sodium symporter; SPTR: uncharacterized protein; TIGRFAM: Arsenical-resistance protein ACR3; IMG reference gene:2504825295; PFAM: Sodium Bile acid symporter family; TIGRFAM: arsenical-resistance protein YP_004442483.1 KEGG: pmz:HMPREF0659_A7073 TraG family protein; SPTR: TraG family protein; IMG reference gene:2504825297 YP_004442484.1 KEGG: pgi:PG1178 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825298 YP_004442485.1 KEGG: pgi:PG1179 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825299; PFAM: Protein of unknown function (DUF1329) YP_004442486.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593:IPR001140:IPR003439; KEGG: ssm:Spirs_3512 ABC transporter related protein; PFAM: ABC transporter-like; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; IMG reference gene:2504825300; PFAM: ABC transporter; ABC transporter transmembrane region YP_004442487.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593:IPR001140:IPR003439; KEGG: ssm:Spirs_3513 ABC transporter related protein; PFAM: ABC transporter-like; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; IMG reference gene:2504825301; PFAM: ABC transporter transmembrane region; ABC transporter YP_004442488.1 COGs: COG1033 exporter of the RND superfamily protein; KEGG: pgi:PG1180 hypothetical protein; SPTR: Membrane protein; IMG reference gene:2504825302; PFAM: MMPL family YP_004442489.1 IMG reference gene:2504825303 YP_004442490.1 InterPro IPR001647; KEGG: pgn:PGN_1921 probable transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; IMG reference gene:2504825304; PFAM: Bacterial regulatory proteins, tetR family YP_004442491.1 IMG reference gene:2504825305 YP_004442492.1 KEGG: pmz:HMPREF0659_A7073 TraG family protein; SPTR: TraG family protein; IMG reference gene:2504825306; PFAM: TraG/TraD family YP_004442493.1 InterPro IPR013096; KEGG: fnu:FN1972 hypothetical protein; PFAM: Cupin 2, conserved barrel; SPTR: Cupin domain protein; IMG reference gene:2504825310; PFAM: Cupin domain YP_004442494.1 COGs: COG2461 conserved hypothetical protein; InterPro IPR012312; KEGG: pmz:HMPREF0659_A7144 hemerythrin HHE cation binding domain protein; PFAM: Haemerythrin/HHE cation-binding motif; SPTR: Hemerythrin HHE cation binding domain protein; IMG reference gene:2504825311 YP_004442495.1 IMG reference gene:2504825312 YP_004442496.1 KEGG: pmz:HMPREF0659_A7227 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825313 YP_004442497.1 COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: bfr:BF1117 TonB-dependent outer membrane receptor protein; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; IMG reference gene:2504825314; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004442498.1 KEGG: bfs:BF1028 lipoprotein; SPTR: lipoprotein; IMG reference gene:2504825315 YP_004442499.1 InterPro IPR005625; KEGG: bfs:BF1027 iron-regulated transmembrane protein; PFAM: PepSY-associated TM helix; SPTR: PepSY domain protein; IMG reference gene:2504825316 YP_004442500.1 KEGG: pgi:PG0814 hypothetical protein; SPTR: uncharacterized protein; manually curated; IMG reference gene:2504825317 YP_004442501.1 IMG reference gene:2504825318 YP_004442502.1 InterPro IPR015082; KEGG: pmz:HMPREF0659_A7103 hypothetical protein; PFAM: Protein of unknown function DUF1896; SPTR: uncharacterized protein; IMG reference gene:2504825319; PFAM: Domain of unknown function (DUF1896) YP_004442503.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: pmz:HMPREF0659_A7104 site-specific recombinase, phage integrase family; PFAM: Integrase, catalytic core, phage; SPTR: Site-specific recombinase, phage integrase family; IMG reference gene:2504825320; PFAM: Phage integrase family YP_004442504.1 COGs: COG0602 Organic radical activating protein; InterPro IPR012837:IPR007197; KEGG: bfs:BF3485 anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM; SPTR: Anaerobic ribonucleoside-triphosphate reductase activating protein; TIGRFAM: Ribonucleoside-triphosphate reductase activating, anaerobic; IMG reference gene:2504825323; PFAM: Radical SAM superfamily; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein YP_004442505.1 COGs: COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; InterPro IPR012833:IPR005144; KEGG: bfs:BF3484 anaerobic ribonucleoside triphosphate reductase; PFAM: ATP-cone; PRIAM: Ribonucleoside-triphosphate reductase; SPTR: Anaerobic ribonucleoside-triphosphate reductase; TIGRFAM: Ribonucleoside-triphosphate reductase, anaerobic; IMG reference gene:2504825324; PFAM: ATP cone domain; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase YP_004442506.1 COGs: COG2759 Formyltetrahydrofolate synthetase; HAMAP: Formate-tetrahydrofolate ligase, FTHFS; InterPro IPR000559; KEGG: pdi:BDI_1014 formate--tetrahydrofolate ligase; PFAM: Formate-tetrahydrofolate ligase, FTHFS; PRIAM: Formate--tetrahydrofolate ligase; SPTR: Formate--tetrahydrofolate ligase; IMG reference gene:2504825326; PFAM: Formate--tetrahydrofolate ligase YP_004442507.1 InterPro IPR002514; KEGG: nth:Nther_1507 transposase IS3/IS911 family protein; PFAM: Transposase IS3/IS911; SPTR: Transposase IS3/family protein; IMG reference gene:2504825327; PFAM: Transposase YP_004442508.1 InterPro IPR001584; KEGG: pgi:PG1420 ISPg5, transposase Orf2; PFAM: Integrase, catalytic core; SPTR: ISPg5, transposase Orf2; IMG reference gene:2504825328; PFAM: Integrase core domain YP_004442509.1 SPTR: uncharacterized protein; IMG reference gene:2504825329 YP_004442510.1 COGs: COG1087 UDP-glucose 4-epimerase; InterPro IPR005886:IPR001509; KEGG: pru:PRU_0847 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucose 4-epimerase; SPTR: UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; IMG reference gene:2504825330; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: UDP-glucose-4-epimerase YP_004442511.1 COGs: COG0509 Glycine cleavage system H protein (lipoate-binding); HAMAP: Glycine cleavage H-protein; InterPro IPR017453:IPR002930; KEGG: pdi:BDI_3171 glycine cleavage system protein H; PFAM: Glycine cleavage H-protein; SPTR: Glycine cleavage system H protein; TIGRFAM: Glycine cleavage H-protein, subgroup; IMG reference gene:2504825331; PFAM: Glycine cleavage H-protein; TIGRFAM: glycine cleavage system H protein YP_004442512.1 COGs: COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; InterPro IPR000031; KEGG: pgn:PGN_0999 phosphoribosylaminoimidazole carboxylase; PFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PRIAM: Phosphoribosylaminoimidazole carboxylase; SPTR: Phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; IMG reference gene:2504825332; PFAM: AIR carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurE protein YP_004442513.1 COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; InterPro IPR004588; KEGG: pgi:PG0952 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; SPTR: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; IMG reference gene:2504825333; PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_004442514.1 COGs: COG0756 dUTPase; HAMAP: Deoxyuridine 5'-triphosphate nucleotidohydrolase; InterPro IPR008181:IPR008180; KEGG: pru:PRU_2916 dUTP diphosphatase; PFAM: DeoxyUTP pyrophosphatase domain; PRIAM: dUTP diphosphatase; SPTR: DUTP diphosphatase; TIGRFAM: DeoxyUTP pyrophosphatase domain, subfamily 1,; IMG reference gene:2504825334; PFAM: dUTPase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase (dut) YP_004442515.1 InterPro IPR019734; KEGG: pdi:BDI_3175 hypothetical protein; SPTR: Tetratricopeptide repeat protein; IMG reference gene:2504825335 YP_004442516.1 SPTR: lipoprotein; IMG reference gene:2504825336 YP_004442517.1 COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR016047; KEGG: pgi:PG0956 M24/M37 family peptidase PFAM: Peptidase M23; SPTR: Peptidase, M23 family; IMG reference gene:2504825337; PFAM: Peptidase family M23 YP_004442518.1 COGs: COG0196 FAD synthase; InterPro IPR004821:IPR002606:IPR015864:IPR015865; KEGG: coc:Coch_1375 riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; PRIAM: FAD synthetase., Riboflavin kinase; SPTR: Riboflavin biosynthesis protein RibF; TIGRFAM: Riboflavin kinase/FAD synthetase; Cytidyltransferase-related; IMG reference gene:2504825338; PFAM: Riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase YP_004442519.1 COGs: COG0009 translation factor (SUA5); InterPro IPR004388:IPR006070; KEGG: pgi:PG1963 SUA5/YciO/YrdC/YwlC family protein; PFAM: Sua5/YciO/YrdC, N-terminal; SPTR: Sua5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; IMG reference gene:2504825339; PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein YP_004442520.1 COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR017475:IPR003362; KEGG: pgn:PGN_1896 hypothetical protein; PFAM: Bacterial sugar transferase; SPTR: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; IMG reference gene:2504825340; PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase YP_004442521.1 COGs: COG0038 Chloride channel protein EriC; InterPro IPR001807:IPR000644; KEGG: pgn:PGN_1897 transport related membrane protein; PFAM: Chloride channel, voltage gated; Cystathionine beta-synthase, core; SPTR: Chloride transporter, ClC family; IMG reference gene:2504825341; PFAM: CBS domain; Voltage gated chloride channel YP_004442522.1 COGs: COG0223 Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; InterPro IPR005794:IPR002376:IPR005793; KEGG: pgi:PG2023 methionyl-tRNA formyltransferase; PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal; PRIAM: Methionyl-tRNA formyltransferase; SPTR: Methionyl-tRNA formyltransferase; TIGRFAM: Methionyl-tRNA formyltransferase; IMG reference gene:2504825342; PFAM: Formyl transferase; Formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase YP_004442523.1 COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase; InterPro IPR001986; KEGG: bvu:BVU_1893 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; PRIAM: 3-phosphoshikimate 1-carboxyvinyltransferase; SPTR: 3-phosphoshikimate 1-carboxyvinyltransferase; IMG reference gene:2504825343; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_004442524.1 COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014001:IPR001650:IPR011545:IPR005580; KEGG: pgi:PG0086 DEAD-box ATP dependent DNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD-box ATP-dependent RNA helicase CshA; IMG reference gene:2504825344; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase YP_004442525.1 COGs: COG0480 Translation elongation factors (GTPase); InterProIPR005225:IPR000795:IPR004161:IPR005517:IPR 000640; KEGG: pgn:PGN_1014 elongation factor G; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; SPTR: translation elongation factor G; TIGRFAM: Small GTP-binding protein; IMG reference gene:2504825345; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain YP_004442526.1 KEGG: lby:Lbys_0995 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825346 YP_004442527.1 COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase; IMG reference gene:2504825347; PFAM: Transposase YP_004442528.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: pgn:PGN_0006 Na+driven multidrug efflux pump; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; IMG reference gene:2504825348; PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_004442529.1 COGs: COG1408 phosphohydrolase; InterPro IPR004843; KEGG: pgi:PG0005 hypothetical protein; PFAM: Metallophosphoesterase; SPTR: Ser/Thr phosphatase family protein; IMG reference gene:2504825349; PFAM: Calcineurin-like phosphoesterase YP_004442530.1 COGs: COG0276 Protoheme ferro-lyase (ferrochelatase); HAMAP: Ferrochelatase; InterPro IPR001015; KEGG: cpi:Cpin_6498 ferrochelatase; PFAM: Ferrochelatase; PRIAM: Ferrochelatase; SPTR: Ferrochelatase; TIGRFAM: Ferrochelatase; IMG reference gene:2504825350; PFAM: Ferrochelatase; TIGRFAM: ferrochelatase YP_004442531.1 COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: pgi:PG0707 TonB-dependent receptor, PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; IMG reference gene:2504825351; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004442532.1 HAMAP: Ribosomal protein S21; InterPro IPR001911; KEGG: fps:FP1190 30S ribosomal protein S21; SPTR: Ribosomal protein S21; TIGRFAM: Ribosomal protein S21; IMG reference gene:2504825352; PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21 YP_004442533.1 COGs: COG3547 Transposase and inactivated derivatives; InterPro IPR003346; KEGG: aas:Aasi_1284 hypothetical protein; PFAM: Transposase, IS116/IS110/IS902; SPTR: Transposase, IS116/IS110/IS902 family; IMG reference gene:2504825353; PFAM: Transposase IS116/IS110/IS902 family; Transposase YP_004442534.1 IMG reference gene:2504825354 YP_004442535.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: bvu:BVU_2750 hypothetical protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug domain protein; IMG reference gene:2504825355; PFAM: TonB-dependent Receptor Plug Domain YP_004442536.1 KEGG: bvu:BVU_2751 hypothetical protein; SPTR: lipoprotein; IMG reference gene:2504825356 YP_004442537.1 InterPro IPR003343; KEGG: acl:ACL_0268 Ig-like domain-containing surface-anchored protein; PFAM: Bacterial Ig-like, group 2; SMART: Bacterial Ig-like, group 2; SPTR: Bacterial group 2 Ig-like protein; IMG reference gene:2504825357; PFAM: Bacterial Ig-like domain (group 2) YP_004442538.1 KEGG: pgn:PGN_1091 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825358 YP_004442539.1 KEGG: pgi:PG1301 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825359 YP_004442540.1 COGs: COG0742 N6-adenine-specific methylase; InterPro IPR016065; KEGG: pgn:PGN_1089 probable methyltransferase; PFAM: Protein of unknown function methylase SPTR: RNA methyltransferase, RsmD family; IMG reference gene:2504825360; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family YP_004442541.1 COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR004652:IPR001269; KEGG: pgn:PGN_0016 TIM-barrel protein; PFAM: tRNA-dihydrouridine synthase; SPTR: TIM-barrel protein, nifR3 family; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; IMG reference gene:2504825361; PFAM: Dihydrouridine synthase (Dus); TIGRFAM: TIM-barrel protein, nifR3 family YP_004442542.1 KEGG: tde:TDE0593 internalin-related protein; SPTR: Leucine rich repeat protein; IMG reference gene:2504825362 YP_004442543.1 COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: pgi:PG0744 RNA methyltransferase; PFAM: tRNA/rRNA methyltransferase, SpoU; SPTR: RNA methyltransferase, TrmH family; IMG reference gene:2504825363; PFAM: SpoU rRNA Methylase family YP_004442544.1 COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterPro IPR004408:IPR004143; KEGG: pgi:PG1601 biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; SPTR: Biotin--[acetyl-CoA-carboxylase] ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; IMG reference gene:2504825364; PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region YP_004442545.1 COGs: COG2315 conserved hypothetical protein; InterPro IPR007351; KEGG: pgi:PG1602 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825365; PFAM: Protein of unknown function (DUF419) YP_004442546.1 COGs: COG0127 Xanthosine triphosphate pyrophosphatase; HAMAP: Nucleoside-triphosphatase rdgB; InterPro IPR002637; KEGG: pgn:PGN_0510 deoxyribonucleoside-triphosphatase; PFAM: Ham1-like protein; PRIAM: Nucleoside-triphosphatase; SPTR: Non-canonical purine NTP pyrophosphatase RdgB; TIGRFAM: Ham1-like protein; IMG reference gene:2504825366; PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family YP_004442547.1 KEGG: pgn:PGN_0509 immunoreactive 84 kDa antigen; SPTR: Immunoreactive 84 kDa antigen PG93 family protein; IMG reference gene:2504825367 YP_004442548.1 COGs: COG3579 Aminopeptidase C; InterPro IPR004134; KEGG: pgn:PGN_0508 aminopeptidase; PFAM: Peptidase C1B, bleomycin hydrolase; PRIAM: Bleomycin hydrolase; SPTR: aminopeptidase C; IMG reference gene:2504825368; PFAM: Peptidase C1-like family YP_004442549.1 COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: dhd:Dhaf_1256 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Oxidoreductase, short chain dehydrogenase/reductase family protein; IMG reference gene:2504825369; PFAM: short chain dehydrogenase YP_004442550.1 COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: amr:AM1_1243 2-succinylbenzoate--CoA ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: o-succinylbenzoate--CoA ligase; SPTR: AMP-binding enzyme; IMG reference gene:2504825370; PFAM: AMP-binding enzyme YP_004442551.1 KEGG: fbc:FB2170_08879 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825371 YP_004442552.1 InterPro IPR007922; PFAM: Protein of unknown function DUF721; SPTR: uncharacterized protein; IMG reference gene:2504825373; PFAM: Protein of unknown function (DUF721) YP_004442553.1 COGs: COG3537 alpha-1 2-mannosidase; InterPro IPR012939; KEGG: pdi:BDI_1618 glycoside hydrolase family protein; PFAM: Glycosyl hydrolase 92; SPTR: alpha-1,2-mannosidase; IMG reference gene:2504825374; PFAM: Glycosyl hydrolase family 92 YP_004442554.1 KEGG: pgn:PGN_0349 upregulated in stationary phase protein A; SPTR: uncharacterized protein; IMG reference gene:2504825375 YP_004442555.1 COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: pgn:PGN_0348 universal stress protein UspA; PFAM: UspA; SPTR: Universal stress family protein; IMG reference gene:2504825376; PFAM: Universal stress protein family YP_004442556.1 IMG reference gene:2504825377 YP_004442557.1 IMG reference gene:2504825378 YP_004442558.1 SPTR: uncharacterized protein; IMG reference gene:2504825379 YP_004442559.1 KEGG: pgn:PGN_1195 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825381 YP_004442560.1 COGs: COG0228 Ribosomal protein S16; HAMAP: Ribosomal protein S16; InterPro IPR000307; KEGG: pgn:PGN_0167 30S ribosomal protein S16; PFAM: Ribosomal protein S16; SPTR: Ribosomal protein S16; TIGRFAM: Ribosomal protein S16; IMG reference gene:2504825382; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16 YP_004442561.1 COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: pgi:PG0088 M16 family peptidase; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; PRIAM: processing peptidase; SPTR: Peptidase M16 inactive domain protein; IMG reference gene:2504825383; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16) YP_004442562.1 COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR004552:IPR002123; KEGG: pgn:PGN_1384 probable 1-acyl-sn-glycerol-3-phosphate acetyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; IMG reference gene:2504825384; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases YP_004442563.1 COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR017867; KEGG: bth:BT_2750 protein-tyrosine-phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; PRIAM: Acid phosphatase; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: Low molecular weight protein-tyrosine-phosphatase; IMG reference gene:2504825385; PFAM: Low molecular weight phosphotyrosine protein phosphatase YP_004442564.1 COGs: COG2194 membrane-associated metal-dependent hydrolase; InterPro IPR000917; KEGG: pgn:PGN_1313 hypothetical protein; PFAM: Sulfatase; SPTR: Arylsulfatase; IMG reference gene:2504825386; PFAM: Sulfatase YP_004442565.1 COGs: COG2194 membrane-associated metal-dependent hydrolase; InterPro IPR000917; KEGG: pgn:PGN_1313 hypothetical protein; PFAM: Sulfatase; SPTR: Arylsulfatase; IMG reference gene:2504825387; PFAM: Sulfatase YP_004442566.1 COGs: COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain; InterPro IPR011551:IPR004518; KEGG: pgn:PGN_0412 nucleoside triphosphate pyrophosphohydrolase; PFAM: NTP pyrophosphohydrolase MazG, catalytic core; SPTR: uncharacterized protein; TIGRFAM: NTP pyrophosphohydrolase MazG, bacterial; IMG reference gene:2504825388; PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein YP_004442567.1 InterPro IPR013217; KEGG: bvu:BVU_1168 hypothetical protein; PFAM: Methyltransferase type 12; SPTR: Methyltransferase domain protein; IMG reference gene:2504825389; PFAM: Methyltransferase domain YP_004442568.1 KEGG: pgn:PGN_1123 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825390 YP_004442569.1 COGs: COG0281 Malic enzyme; InterPro IPR012301:IPR012302:IPR002505; KEGG: pgn:PGN_1685 malic enzyme; PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; Phosphate acetyl/butaryl transferase; SPTR: Malate dehydrogenase (Oxaloacetate-decarboxylating) (NADP(+)); IMG reference gene:2504825391; PFAM: Phosphate acetyl/butaryl transferase; Malic enzyme, NAD binding domain; Malic enzyme, N-terminal domain YP_004442570.1 COGs: COG0325 enzyme with a TIM-barrel fold; InterPro IPR011078:IPR001608; KEGG: pgi:PG2126 hypothetical protein; PFAM: Alanine racemase, N-terminal; SPTR: Pyridoxal phosphate enzyme, YggS family; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; IMG reference gene:2504825392; PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family YP_004442571.1 KEGG: pgn:PGN_0176 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825393 YP_004442572.1 KEGG: spx:SPG_0505 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825394 YP_004442573.1 KEGG: pgn:PGN_0477 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825395 YP_004442574.1 KEGG: pdi:BDI_1698 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825396 YP_004442575.1 KEGG: pgn:PGN_1416 probable lysyl endopeptidase precursor; SPTR: Extracellular protease family protein; IMG reference gene:2504825397 YP_004442576.1 KEGG: pmz:HMPREF0659_A5202 DNA repair protein RecO; SPTR: DNA repair protein RecO; IMG reference gene:2504825398; PFAM: Recombination protein O C terminal; Recombination protein O N terminal YP_004442577.1 COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR011951:IPR006439:IPR005834; KEGG: pgn:PGN_0344 probable haloacid dehalogenase-like hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: HAD hydrolase, TIGR02254 family; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB; HAD-superfamily hydrolase, subfamily IA, variant 1; IMG reference gene:2504825399; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; HAD superfamily (subfamily IA) hydrolase, TIGR02254 YP_004442578.1 KEGG: pgn:PGN_0345 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825400 YP_004442579.1 COGs: COG0313 methyltransferase; HAMAP: Ribosomal RNA small subunit methyltransferase I; InterPro IPR008189:IPR000878; KEGG: pgn:PGN_0346 methyltransferase; PFAM: Tetrapyrrole methylase; SPTR: S-adenosylmethionine-dependent methyltransferase, YraL family; TIGRFAM: Uncharacterised protein family UPF0011; IMG reference gene:2504825401; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family YP_004442580.1 COGs: COG1739 conserved hypothetical protein; InterPro IPR001498; KEGG: pgn:PGN_0237 hypothetical protein; PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; SPTR: YigZ family protein; IMG reference gene:2504825402; PFAM: Uncharacterized protein family UPF0029; TIGRFAM: uncharacterized protein, YigZ family YP_004442581.1 KEGG: pgi:PG1035 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825403 YP_004442582.1 KEGG: pdi:BDI_1187 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825404 YP_004442583.1 InterPro IPR003675; KEGG: pgn:PGN_1454 probable abortive infection protein; PFAM: Abortive infection protein; SPTR: CAAX amino terminal protease family protein; IMG reference gene:2504825405; PFAM: CAAX amino terminal protease family YP_004442584.1 KEGG: pgn:PGN_0197 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825406 YP_004442585.1 InterPro IPR002482:IPR018392; KEGG: pgi:PG2150 LysM domain-containing protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: LysM domain protein; IMG reference gene:2504825407; PFAM: LysM domain YP_004442586.1 COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro IPR003821:IPR013512:IPR013644; KEGG: pdi:BDI_0480 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase; SPTR: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; IMG reference gene:2504825408; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_004442587.1 COGs: COG0806 RimM protein required for 16S rRNA processing; HAMAP: 16S rRNA processing protein RimM; InterPro IPR011961:IPR007903; KEGG: pgn:PGN_1152 16S rRNA-processing protein RimM; PFAM: PRC-barrel; SPTR: 16S rRNA processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; IMG reference gene:2504825409; PFAM: RimM N-terminal domain; TIGRFAM: 16S rRNA processing protein RimM YP_004442588.1 COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; InterPro IPR005750:IPR001986; KEGG: pgi:PG1366 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; PRIAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; SPTR: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; IMG reference gene:2504825410; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_004442589.1 KEGG: pgn:PGN_1154 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825411 YP_004442590.1 COGs: COG0166 Glucose-6-phosphate isomerase; HAMAP: Phosphoglucose isomerase (PGI); InterPro IPR001672; KEGG: pgn:PGN_1155 glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase (PGI); PRIAM: Glucose-6-phosphate isomerase; SPTR: Glucose-6-phosphate isomerase; IMG reference gene:2504825412; PFAM: Phosphoglucose isomerase YP_004442591.1 COGs: COG0240 Glycerol-3-phosphate dehydrogenase; InterPro IPR011128:IPR006109; KEGG: pgi:PG1369 glycerol-3-phosphate dehydrogenase (NAD(P)+); PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal; NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal; PRIAM: Glycerol-3-phosphate dehydrogenase (NAD(P)(+)); SPTR: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminal domain protein; IMG reference gene:2504825413; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YP_004442592.1 COGs: COG1190 Lysyl-tRNA synthetase (class II); HAMAP: Lysyl-tRNA synthetase; InterPro IPR002313:IPR004365:IPR004364; KEGG: pgn:PGN_1157 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: Lysine--tRNA ligase; SPTR: Lysine--tRNA ligase; TIGRFAM: Lysyl-tRNA synthetase, class II; IMG reference gene:2504825414; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial YP_004442593.1 COGs: COG0530 Ca2+/Na+ antiporter; InterPro IPR004481:IPR004837; KEGG: pdi:BDI_2547 Na+/Ca2+ exchanger protein; PFAM: Sodium/calcium exchanger membrane region; SPTR: K+-dependent Na+/Ca+ exchanger; TIGRFAM: K+-dependent Na+/Ca+ exchanger-like; IMG reference gene:2504825415; PFAM: Sodium/calcium exchanger protein; TIGRFAM: calcium/proton exchanger (cax); K+-dependent Na+/Ca+ exchanger related-protein YP_004442594.1 COGs: COG1512 Beta-propeller domains of methanol dehydrogenase type; InterPro IPR007621; KEGG: pgn:PGN_1600 hypothetical protein; PFAM: Protein of unknown function DUF477; SPTR: uncharacterized protein; IMG reference gene:2504825416; PFAM: Domain of unknown function (DUF477) YP_004442595.1 COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: pgn:PGN_1601 conserved hypothetical protein with LemA family domain; PFAM: LemA; SPTR: LemA family protein; IMG reference gene:2504825417; PFAM: LemA family YP_004442596.1 COGs: COG1781 aspartate carbamoyltransferase regulatory subunit; HAMAP: aspartate transcarbamylase regulatory subunit; InterPro IPR002801:IPR020545:IPR020542; KEGG: pgn:PGN_1603 aspartate carbamoyltransferase regulatory subunit; PFAM: aspartate carbamoyltransferase regulatory subunit, N-terminal; aspartate carbamoyltransferase regulatory subunit, C-terminal; SPTR: aspartate carbamoyltransferase, regulatory subunit; TIGRFAM: aspartate transcarbamylase regulatory subunit; IMG reference gene:2504825418; PFAM: aspartate carbamoyltransferase regulatory chain, metal binding domain; aspartate carbamoyltransferase regulatory chain, allosteric domain; TIGRFAM: aspartate carbamoyltransferase, regulatory subunit YP_004442597.1 COGs: COG0540 aspartate carbamoyltransferase catalytic chain; HAMAP: aspartate carbamoyltransferase; InterPro IPR002082:IPR006132:IPR006131; KEGG: pgi:PG0357 aspartate carbamoyltransferase catalytic subunit; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; PRIAM: aspartate carbamoyltransferase; SPTR: aspartate carbamoyltransferase; TIGRFAM: aspartate carbamoyltransferase, eukaryotic; IMG reference gene:2504825419; PFAM: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase YP_004442598.1 IMG reference gene:2504825420 YP_004442599.1 KEGG: pgn:PGN_0374 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825421 YP_004442600.1 COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterPro IPR003594:IPR001241:IPR013506; KEGG: pgi:PG0368 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like; SPTR: DNA topoisomerase IV subunit B; IMG reference gene:2504825422; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus YP_004442601.1 COGs: COG0669 Phosphopantetheine adenylyltransferase; HAMAP: Coenzyme A biosynthesis protein; InterPro IPR004821:IPR001980:IPR004820; KEGG: pgn:PGN_1593 phosphopantetheine adenylyltransferase; PFAM: Cytidylyltransferase; PRIAM: Pantetheine-phosphate adenylyltransferase; SPTR: Pantetheine-phosphate adenylyltransferase; TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; IMG reference gene:2504825423; PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain YP_004442602.1 COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase; InterPro IPR005863:IPR000713:IPR013221:IPR004101; KEGG: pmz:HMPREF0659_A6237 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a lanineligase; SPTR:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-al anineligase; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; IMG reference gene:2504825424; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase YP_004442603.1 COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog; InterPro IPR000394:IPR007046:IPR007634; KEGG: pgn:PGN_1202 RNA polymerase sigma-54 factor; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54; SPTR: RNA polymerase sigma-54 factor; TIGRFAM: RNA polymerase sigma factor 54; IMG reference gene:2504825425; PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor YP_004442604.1 KEGG: pgi:PG0788 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825426 YP_004442605.1 COGs: COG3263 NhaP-type Na+/H+ and K+/H+ antiporter with a unique C-terminal domain; InterPro IPR006153; KEGG: pgi:PG0381 potassium/proton antiporter; PFAM: Cation/H+ exchanger; SPTR: Potassium/proton antiporter; IMG reference gene:2504825427; PFAM: TrkA-C domain; Sodium/hydrogen exchanger family YP_004442606.1 COGs: COG3004 Na+/H+ antiporter; HAMAP: Na+/H+ antiporter NhaA; InterPro IPR004670; KEGG: pgn:PGN_1804 Na+/H+ antiporter; PFAM: Na+/H+ antiporter NhaA; SPTR: Na+/H+ antiporter NhaA; TIGRFAM: Na+/H+ antiporter NhaA; IMG reference gene:2504825428; PFAM: Na+/H+ antiporter 1; TIGRFAM: Na+/H+ antiporter NhaA YP_004442607.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: pdi:BDI_2480 two-component response regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; SPTR: Transcriptional regulatory protein RprY; IMG reference gene:2504825429; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004442608.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: pru:PRU_0614 sensor histidine kinase RprX; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SPTR: ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; IMG reference gene:2504825430; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004442609.1 COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: pgi:PG2026 phosphoglycerate mutase family protein; PFAM: Phosphoglycerate mutase; SPTR: Phosphoglycerate mutase family protein; IMG reference gene:2504825431; PFAM: Phosphoglycerate mutase family YP_004442610.1 InterPro IPR002942; KEGG: pgn:PGN_1256 hypothetical protein; PFAM: RNA-binding S4; SMART: RNA-binding S4; SPTR: S4 domain protein; IMG reference gene:2504825432; PFAM: S4 domain YP_004442611.1 COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterPro IPR004527:IPR020058; KEGG: pgi:PG1566 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; PRIAM: Glutamate--tRNA ligase; SPTR: Glutamate--tRNA ligase; TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; IMG reference gene:2504825433; PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family YP_004442612.1 COGs: COG0560 Phosphoserine phosphatase; InterPro IPR004469:IPR006383:IPR002912:IPR005834; KEGG: pgn:PGN_0692 phosphoserine phosphatase; PFAM: Haloacid dehalogenase-like hydrolase; Amino acid-binding ACT; PRIAM: Phosphoserine phosphatase; SPTR: Phosphoserine phosphatase SerB; TIGRFAM: Phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB, PSPase-like; IMG reference gene:2504825434; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like; phosphoserine phosphatase SerB YP_004442613.1 InterPro IPR013097; KEGG: pgi:PG0652 hypothetical protein; PFAM: Stress responsive alpha-beta barrel; SPTR: Stress responsive A/B barrel domain protein; IMG reference gene:2504825435; PFAM: Stress responsive A/B Barrel Domain YP_004442614.1 COGs: COG0225 Peptide methionine sulfoxide reductase; HAMAP: Peptide methionine sulphoxide reductase MsrA; Peptide methionine sulfoxide reductase msrB; InterPro IPR002569:IPR002579; KEGG: bfr:BF3573 bifunctional methionine sulfoxide reductase A/B protein; PFAM: Peptide methionine sulphoxide reductase MsrA; Methionine sulphoxide reductase B; PRIAM: Peptide-methionine (S)-S-oxide reductase., Peptide-methionine (R)-S-oxide reductase; SPTR: Methionine-R-sulfoxide reductase; TIGRFAM: Methionine sulphoxide reductase B; Peptide methionine sulphoxide reductase MsrA; manually curated; IMG reference gene:2504825436; PFAM: SelR domain; Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase; methionine-R-sulfoxide reductase YP_004442615.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: pdi:BDI_2780 glycosyl transferase family protein; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyltransferase, group 1 family protein; IMG reference gene:2504825437; PFAM: Glycosyl transferases group 1 YP_004442616.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: pgn:PGN_0777 probable glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: PGL/P-HBAD biosynthesis glycosyltransferase; IMG reference gene:2504825438; PFAM: Glycosyl transferase family 2 YP_004442617.1 COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR005743:IPR002205:IPR006691; KEGG: pgi:PG1386 DNA gyrase, A subunit; PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit A or C-terminal; SPTR: DNA gyrase, A subunit; TIGRFAM: DNA gyrase, subunit A; IMG reference gene:2504825439; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller; TIGRFAM: DNA gyrase, A subunit YP_004442618.1 InterPro IPR019734:IPR001440; KEGG: pgi:PG1385 TPR domain-containing protein; PFAM: Tetratricopeptide TPR-1; SPTR: Tetratricopeptide repeat protein; IMG reference gene:2504825440; PFAM: Tetratricopeptide repeat YP_004442619.1 IMG reference gene:2504825441 YP_004442620.1 KEGG: pdi:BDI_1126 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825442 YP_004442621.1 InterPro IPR004993; KEGG: pgi:PG1720 hypothetical protein; PFAM: GH3 auxin-responsive promoter; SPTR: GH3 auxin-responsive promoter; IMG reference gene:2504825443; PFAM: GH3 auxin-responsive promoter YP_004442622.1 KEGG: vsp:VS_II0832 ABC transporter, ATP-binding protein-related protein; SPTR: uncharacterized protein; IMG reference gene:2504825445 YP_004442623.1 InterPro IPR001584; KEGG: pgi:PG1420 ISPg5, transposase Orf2; PFAM: Integrase, catalytic core; SPTR: ISPg5, transposase Orf2; IMG reference gene:2504825446; PFAM: Integrase core domain YP_004442624.1 InterPro IPR002514; KEGG: nth:Nther_1507 transposase IS3/IS911 family protein; PFAM: Transposase IS3/IS911; SPTR: Transposase IS3/family protein; IMG reference gene:2504825447; PFAM: Transposase YP_004442625.1 InterPro IPR001387; KEGG: pmz:HMPREF0659_A6124 helix-turn-helix protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: uncharacterized protein; IMG reference gene:2504825448; PFAM: Helix-turn-helix YP_004442626.1 KEGG: pin:Ping_0122 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825449 YP_004442627.1 COGs: COG2865 transcriptional regulator protein; InterPro IPR007421; KEGG: pgn:PGN_0933 probable transcriptional regulator; PFAM: ATPase associated with various cellular activities, AAA-4; SPTR: Divergent AAA domain protein; IMG reference gene:2504825450; PFAM: Divergent AAA domain YP_004442628.1 InterPro IPR004919; KEGG: smb:smi_0898 hypothetical protein; PFAM: Protein of unknown function DUF262; SPTR: uncharacterized protein; IMG reference gene:2504825452; PFAM: Protein of unknown function DUF262 YP_004442629.1 IMG reference gene:2504825453 YP_004442630.1 InterPro IPR005094; KEGG: pmz:HMPREF0659_A7074 relaxase/mobilization nuclease domain protein; PFAM: Endonuclease relaxase, MobA/VirD2; SPTR: Relaxase/mobilization nuclease domain protein; IMG reference gene:2504825454; PFAM: Relaxase/Mobilisation nuclease domain YP_004442631.1 KEGG: pmz:HMPREF0659_A7075 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825455 YP_004442632.1 KEGG: pmz:HMPREF0659_A7077 conjugative transposon protein TraA family protein; SPTR: Conjugative transposon protein TraA family protein; IMG reference gene:2504825456; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004442633.1 KEGG: pmz:HMPREF0659_A7078 hypothetical protein; SPTR: Conserved domain protein; IMG reference gene:2504825457; PFAM: Protein of unknown function (DUF3408) YP_004442634.1 KEGG: pmz:HMPREF0659_A7079 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825458 YP_004442635.1 KEGG: pmz:HMPREF0659_A7080 conjugative transposon protein TraE; SPTR: Conjugative transposon protein TraE; IMG reference gene:2504825459 YP_004442636.1 KEGG: pgi:PG1482 conjugative transposon protein TraF; SPTR: Conjugative transposon protein TraF; IMG reference gene:2504825460 YP_004442637.1 COGs: COG3451 Type IV secretory pathway VirB4 protein; KEGG: pmz:HMPREF0659_A7082 conjugation system ATPase, TraG family; SPTR: Conjugation system ATPase, TraG family; TIGRFAM: Bacteroides conjugation system ATPase, TraG family; IMG reference gene:2504825461; TIGRFAM: Bacteroides conjugation system ATPase, TraG family YP_004442638.1 KEGG: pmz:HMPREF0659_A7083 conjugative transposon protein TraI; SPTR: Conjugative transposon protein TraI; IMG reference gene:2504825462 YP_004442639.1 InterPro IPR012424; KEGG: pmz:HMPREF0659_A7084 conjugative transposon TraJ protein; PFAM: Homologues of TraJ from Bacteroides conjugative transposon; SPTR: Conjugative transposon protein TraJ; IMG reference gene:2504825463; PFAM: Homologues of TraJ from Bacteroides conjugative transposon; TIGRFAM: Bacteroides conjugative transposon TraJ protein YP_004442640.1 KEGG: pmz:HMPREF0659_A7085 conjugative transposon TraK protein; SPTR: Conjugative transposon TraK protein; IMG reference gene:2504825464; TIGRFAM: Bacteroides conjugative transposon TraK protein YP_004442641.1 KEGG: pgi:PG1477 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825465 YP_004442642.1 KEGG: pmz:HMPREF0659_A7086 conjugative transposon TraM protein; SPTR: Conjugative transposon TraM protein; TIGRFAM: Bacteroides conjugative transposon TraM protein; IMG reference gene:2504825466; PFAM: Protein of unknown function (DUF3714); TIGRFAM: Bacteroides conjugative transposon TraM protein YP_004442643.1 KEGG: pmz:HMPREF0659_A7087 conjugative transposon TraN protein; SPTR: Conjugative transposon TraN protein; TIGRFAM: Bacteroides conjugative transposon TraN protein; IMG reference gene:2504825467; TIGRFAM: Bacteroides conjugative transposon TraN protein YP_004442644.1 InterPro IPR018899; KEGG: pmz:HMPREF0659_A7236 conjugative transposon protein TraO; PFAM: Conjugative transposon protein TraO; SPTR: Conjugative transposon protein TraO; IMG reference gene:2504825468; PFAM: Conjugative transposon protein TraO YP_004442645.1 KEGG: pmz:HMPREF0659_A7235 conjugative transposon protein TraQ; SPTR: Conjugative transposon protein TraQ; IMG reference gene:2504825469 YP_004442646.1 IMG reference gene:2504825470 YP_004442647.1 KEGG: rpc:RPC_0124 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825471 YP_004442648.1 KEGG: pmz:HMPREF0659_A7099 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825472 YP_004442649.1 KEGG: pmz:HMPREF0659_A7227 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825473 YP_004442650.1 KEGG: pmz:HMPREF0659_A7226 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825474 YP_004442651.1 KEGG: pgi:PG0814 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825475 YP_004442652.1 InterPro IPR015082; KEGG: pmz:HMPREF0659_A7103 hypothetical protein; PFAM: Protein of unknown function DUF1896; SPTR: uncharacterized protein; IMG reference gene:2504825476; PFAM: Domain of unknown function (DUF1896) YP_004442653.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: pmz:HMPREF0659_A7104 site-specific recombinase, phage integrase family; PFAM: Integrase, catalytic core, phage; SPTR: Site-specific recombinase, phage integrase family; IMG reference gene:2504825477; PFAM: Phage integrase family YP_004442654.1 COGs: COG1528 Ferritin-like protein; InterPro IPR008331; KEGG: bth:BT_1373 ferritin A; PFAM: Ferritin/Dps protein; SPTR: Ferritin-like protein; IMG reference gene:2504825479; PFAM: Ferritin-like domain YP_004442655.1 InterPro IPR003400; KEGG: pgn:PGN_0803 hypothetical protein; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: uncharacterized protein; IMG reference gene:2504825482; PFAM: Biopolymer transport protein ExbD/TolR YP_004442656.1 InterPro IPR003400; KEGG: pgn:PGN_0804 hypothetical protein; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: uncharacterized protein; IMG reference gene:2504825483; PFAM: Biopolymer transport protein ExbD/TolR YP_004442657.1 KEGG: pgn:PGN_0805 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825484 YP_004442658.1 COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: pgn:PGN_0806 MotA/TolQ/ExbB proton channel protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Transporter, MotA/TolQ/ExbB proton channel family protein; IMG reference gene:2504825485; PFAM: MotA/TolQ/ExbB proton channel family YP_004442659.1 COGs: COG0084 Mg-dependent DNase; InterPro IPR001130:IPR015991; KEGG: pgi:PG0783 hydrolase, PFAM: Deoxyribonuclease, TatD-related; SPTR: Hydrolase, TatD family; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; IMG reference gene:2504825487; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family YP_004442660.1 COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: bth:BT_2058 isoprenyl synthetase; PFAM: Polyprenyl synthetase; SPTR: Polyprenyl synthetase; IMG reference gene:2504825488; PFAM: Polyprenyl synthetase YP_004442661.1 InterPro IPR003538:IPR006260; KEGG: pgn:PGN_0809 TonB protein; PFAM: Gram-negative bacterial tonB protein; SPTR: TonB-dependent receptor; TIGRFAM: TonB, C-terminal; IMG reference gene:2504825489; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain YP_004442662.1 InterPro IPR011701; KEGG: pgn:PGN_1506 transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Transporter, major facilitator family protein; IMG reference gene:2504825490; PFAM: Major Facilitator Superfamily YP_004442663.1 COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR013221:IPR001645; KEGG: pgn:PGN_1505 folylpolyglutamate synthase; PFAM: Mur ligase, central; PRIAM: Tetrahydrofolate synthase; SPTR: Bifunctional protein FolC; TIGRFAM: Folylpolyglutamate synthetase; IMG reference gene:2504825491; PFAM: Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase YP_004442664.1 COGs: COG0104 adenylosuccinate synthase; HAMAP: adenylosuccinate synthetase; InterPro IPR001114; KEGG: pgn:PGN_1504 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; PRIAM: adenylosuccinate synthase; SMART: adenylosuccinate synthetase; SPTR: adenylosuccinate synthase; TIGRFAM: adenylosuccinate synthetase; IMG reference gene:2504825492; PFAM: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase YP_004442665.1 COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: pgn:PGN_1503 probable ferric uptake transcriptional regulator; PFAM: Ferric-uptake regulator; SPTR: uncharacterized protein; IMG reference gene:2504825493; PFAM: Ferric uptake regulator family YP_004442666.1 KEGG: tde:TDE0593 internalin-related protein; SPTR: Leucine rich repeat protein; IMG reference gene:2504825494 YP_004442667.1 InterPro IPR001611; KEGG: tde:TDE0593 internalin-related protein; SPTR: Leucine rich repeat protein; IMG reference gene:2504825495 YP_004442668.1 COGs: COG3142 Uncharacterized protein involved in copper resistance; InterPro IPR005627; KEGG: pru:PRU_1169 copper homeostasis protein; PFAM: CutC; SPTR: CutC family protein; IMG reference gene:2504825496; PFAM: CutC family YP_004442669.1 InterPro IPR002931; KEGG: pru:PRU_1170 transglutaminase-like protein; PFAM: Transglutaminase-like; SMART: Transglutaminase-like; SPTR: Transglutaminase-like protein; IMG reference gene:2504825497; PFAM: Transglutaminase-like superfamily YP_004442670.1 InterPro IPR005821; KEGG: mag:amb3362 Kef-type K+ transporter NAD-binding component; PFAM: Ion transport; SPTR: Ion transport protein; IMG reference gene:2504825498; PFAM: Ion transport protein YP_004442671.1 COGs: COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase); InterPro IPR000816; KEGG: ton:TON_1690 pyrrolidone-carboxylate peptidase; PFAM: Peptidase C15, pyroglutamyl peptidase I; PRIAM: Pyroglutamyl-peptidase I; SPTR: Pyrrolidone-carboxylate peptidase; IMG reference gene:2504825499; PFAM: Pyroglutamyl peptidase; TIGRFAM: pyroglutamyl-peptidase I YP_004442672.1 SPTR: uncharacterized protein; IMG reference gene:2504825500 YP_004442673.1 SPTR: uncharacterized protein; IMG reference gene:2504825501 YP_004442674.1 SPTR: uncharacterized protein; IMG reference gene:2504825502 YP_004442675.1 SPTR: uncharacterized protein; IMG reference gene:2504825503 YP_004442676.1 IMG reference gene:2504825504 YP_004442677.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: mtt:Ftrac_2998 membrane protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA family protein; IMG reference gene:2504825505; PFAM: OmpA family YP_004442678.1 SPTR: uncharacterized protein; IMG reference gene:2504825506 YP_004442679.1 KEGG: npu:Npun_F4645 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825507; PFAM: Tellurite resistance protein TerB YP_004442680.1 IMG reference gene:2504825508 YP_004442681.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: mtt:Ftrac_2998 membrane protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA family protein; IMG reference gene:2504825509; PFAM: OmpA family YP_004442682.1 IMG reference gene:2504825510 YP_004442683.1 IMG reference gene:2504825511 YP_004442684.1 KEGG: pgn:PGN_1678 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825512; PFAM: Protein of unknown function (DUF2795) YP_004442685.1 InterPro IPR019861; KEGG: pgi:PG0287 hypothetical protein; SPTR: Bacteroidetes-specific membrane protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; manually curated; IMG reference gene:2504825513; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein YP_004442686.1 COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: pgn:PGN_1676 hypothetical protein; PFAM: Sulphatase-modifying factor; SPTR: gliding motility-associated lipoprotein GldK; IMG reference gene:2504825514; PFAM: Formylglycine-generating sulfatase enzyme; TIGRFAM: gliding motility-associated lipoprotein GldK YP_004442687.1 InterPro IPR019852; KEGG: pgn:PGN_1675 hypothetical protein; SPTR: Gliding motility-associated protein GldL; TIGRFAM: Gliding motility-associated protein, GldL; IMG reference gene:2504825515; TIGRFAM: gliding motility-associated protein GldL YP_004442688.1 InterPro IPR019859; KEGG: pgn:PGN_1674 hypothetical protein; SPTR: Gliding motility-associated protein GldM; TIGRFAM: Gliding motility-associated protein GldM; IMG reference gene:2504825516; PFAM: GldM C-terminal domain; GldM N-terminal domain; TIGRFAM: gliding motility-associated protein GldM YP_004442689.1 InterPro IPR019847; KEGG: pgi:PG0291 hypothetical protein; SPTR: Gliding motility-associated protein GldN; TIGRFAM: Gliding motility associated protein GldN; IMG reference gene:2504825517; TIGRFAM: gliding motility associated protein GldN YP_004442690.1 KEGG: pgn:PGN_1611 hypothetical protein; SPTR: Leucine rich repeat protein; IMG reference gene:2504825518 YP_004442691.1 KEGG: tva:TVAG_495790 surface antigen BspA-like; SPTR: Conserved domain protein; IMG reference gene:2504825519 YP_004442692.1 COGs: COG0414 Panthothenate synthetase; HAMAP: Pantoate-beta-alanine ligase; InterPro IPR003721:IPR004821; KEGG: pdi:BDI_0213 pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; SPTR: Pantoate--beta-alanine ligase; TIGRFAM: Pantoate-beta-alanine ligase; Cytidyltransferase-related; IMG reference gene:2504825520; PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; cytidyltransferase-related domain YP_004442693.1 COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); InterPro IPR003699; KEGG: pgn:PGN_0981 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; IMG reference gene:2504825521; PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_004442694.1 InterPro IPR001478; KEGG: pgi:PG1726 PDZ domain-containing protein; PFAM: PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; SPTR: PDZ/DHR/GLGF domain protein; IMG reference gene:2504825522; PFAM: PDZ domain (Also known as DHR or GLGF) YP_004442695.1 COGs: COG1546 Uncharacterized protein (competence- and mitomycin-induced); InterPro IPR008136; KEGG: sti:Sthe_2029 CinA domain protein; PFAM: CinA, C-terminal; SPTR: Competence/damage-inducible protein CinA C-terminal domain protein; TIGRFAM: CinA, C-terminal; IMG reference gene:2504825523; PFAM: Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA C-terminal domain YP_004442696.1 COGs: COG0533 Metal-dependent protease with possible chaperone activity; HAMAP: O-sialoglycoprotein endopeptidase; InterPro IPR000905:IPR017861; KEGG: pgi:PG1724 DNA-binding/iron metalloprotein/AP endonuclease; PFAM: Peptidase M22, glycoprotease; PRIAM: O-sialoglycoprotein endopeptidase; SPTR: glycoprotease GCP; TIGRFAM: glycoprotease GCP; Peptidase M22, glycoprotease, subgroup; IMG reference gene:2504825524; PFAM: Glycoprotease family; TIGRFAM: glycoprotease GCP; metallohydrolase, glycoprotease/Kae1 family YP_004442697.1 COGs: COG0319 metal-dependent hydrolase; HAMAP: Uncharacterised protein family UPF0054; InterPro IPR002036; KEGG: pgi:PG0510 hypothetical protein; PFAM: Uncharacterised protein family UPF0054; SPTR: Translation metalloprotein YbeY; TIGRFAM: Uncharacterised protein family UPF0054; IMG reference gene:2504825525; PFAM: Uncharacterized protein family UPF0054; TIGRFAM: metalloprotein, YbeY/UPF0054 family YP_004442698.1 SPTR: uncharacterized protein; IMG reference gene:2504825526 YP_004442699.1 SPTR: uncharacterized protein; IMG reference gene:2504825527 YP_004442700.1 COGs: COG0108 3 4-dihydroxy-2-butanone 4-phosphate synthase; HAMAP: GTP cyclohydrolase-2; InterPro IPR000422:IPR000926; KEGG: pdi:BDI_3492 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; PFAM: DHBP synthase RibB; GTP cyclohydrolase II; SPTR: 3,4-dihydroxy-2-butanone-4-phosphate synthase; TIGRFAM: DHBP synthase RibB; GTP cyclohydrolase II; IMG reference gene:2504825528; PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_004442701.1 COGs: COG0795 permease; InterPro IPR005495; KEGG: pgn:PGN_0642 hypothetical protein; PFAM: Permease YjgP/YjgQ, predicted; SPTR: phage tail component, N-terminal domain protein; IMG reference gene:2504825529; PFAM: Predicted permease YjgP/YjgQ family YP_004442702.1 COGs: COG0781 Transcription termination factor; InterPro IPR006027:IPR011605; KEGG: pgi:PG0807 NusB family protein; PFAM: NusB/RsmB/TIM44; SPTR: Transcription antitermination factor NusB; TIGRFAM: NusB antitermination factor; IMG reference gene:2504825530; PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB YP_004442703.1 KEGG: pgn:PGN_1907 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825531 YP_004442704.1 COGs: COG1193 Mismatch repair ATPase (MutS family); HAMAP: MutS2 protein; InterPro IPR000432:IPR002625:IPR007696; KEGG: pgi:PG0384 MutS2 family protein; PFAM: Smr protein/MutS2 C-terminal; DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; Smr protein/MutS2 C-terminal; SPTR: MutS2 family protein; IMG reference gene:2504825532; PFAM: MutS domain V; Smr domain YP_004442705.1 COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR008915; KEGG: pgn:PGN_1582 membrane-associated zinc metalloprotease; PFAM: Peptidase M50; SPTR: RIP metalloprotease RseP; IMG reference gene:2504825533; PFAM: Peptidase family M50; TIGRFAM: RIP metalloprotease RseP YP_004442706.1 COGs: COG0259 Pyridoxamine-phosphate oxidase; HAMAP: Pyridoxamine 5'-phosphate oxidase; InterPro IPR011576:IPR019576:IPR000659; KEGG: pgn:PGN_0403 pyridoxamine-phosphate oxidase; PFAM: Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal; Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; PRIAM: Pyridoxal 5'-phosphate synthase; SPTR: Pyridoxamine 5'-phosphate oxidase; TIGRFAM: Pyridoxamine 5'-phosphate oxidase; IMG reference gene:2504825534; PFAM: Pyridoxamine 5'-phosphate oxidase; Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; TIGRFAM: pyridoxamine-phosphate oxidase YP_004442707.1 COGs: COG1214 Inactive homolog of metal-dependent protease molecular chaperone; InterPro IPR000905; KEGG: pdi:BDI_0158 glycoprotease; PFAM: Peptidase M22, glycoprotease; SPTR: Universal bacterial protein YeaZ; TIGRFAM: universal protein YeaZ; IMG reference gene:2504825535; PFAM: Glycoprotease family; TIGRFAM: universal bacterial protein YeaZ YP_004442708.1 COGs: COG2086 Electron transfer flavoprotein beta subunit; InterPro IPR014730; KEGG: pgn:PGN_0801 probable electron transfer flavoprotein beta subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SPTR: Electron transfer flavoprotein subunit beta; IMG reference gene:2504825536; PFAM: Electron transfer flavoprotein domain YP_004442709.1 COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterPro IPR014730:IPR014731; KEGG: pgn:PGN_0800 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SPTR: Electron transfer flavoprotein subunit alpha; IMG reference gene:2504825537; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain YP_004442710.1 COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: pgn:PGN_0799 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase, C-terminal domain protein; IMG reference gene:2504825538; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase C terminal; Acyl-CoA dehydrogenase, N-terminal domain YP_004442711.1 COGs: COG0207 Thymidylate synthase; HAMAP: Thymidylate synthase; InterPro IPR000398; KEGG: thymidylate synthase; PFAM: Thymidylate synthase, C-terminal; PRIAM: Thymidylate synthase; SPTR: Thymidylate synthase; TIGRFAM: Thymidylate synthase, C-terminal; IMG reference gene:2504825539; PFAM: Thymidylate synthase; TIGRFAM: thymidylate synthase YP_004442712.1 InterPro IPR003343; PFAM: Bacterial Ig-like, group 2; SPTR: Bacterial group 2 Ig-like protein; IMG reference gene:2504825540; PFAM: Bacterial Ig-like domain (group 2) YP_004442713.1 HAMAP: 50S ribosomal protein L34; InterPro IPR000271; KEGG: LSU ribosomal protein L34P; PFAM: Ribosomal protein L34; SPTR: Ribosomal protein L34; TIGRFAM: Ribosomal protein L34; IMG reference gene:2504825541; PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type YP_004442714.1 InterPro IPR001544; KEGG: pgn:PGN_1333 probable para-aminobenzoate synthase component I; PFAM: Aminotransferase, class IV; SPTR: uncharacterized protein; IMG reference gene:2504825542; PFAM: Aminotransferase class IV YP_004442715.1 COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR015890; KEGG: pgn:PGN_1332 para-aminobenzoate synthase component I; PFAM: Chorismate binding, C-terminal; SPTR: Para-aminobenzoate synthase component I; IMG reference gene:2504825543; PFAM: chorismate binding enzyme YP_004442716.1 COGs: COG0512 Anthranilate/para-aminobenzoate synthase component II; InterPro IPR000991:IPR006221; KEGG: pgn:PGN_0747 probable anthranilate synthase component II; PFAM: Glutamine amidotransferase class-I, C-terminal; PRIAM: Anthranilate synthase; SPTR: Glutamine amidotransferase, class I; TIGRFAM: Glutamine amidotransferase of anthranilate synthase; IMG reference gene:2504825544; PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase YP_004442717.1 COGs: COG1373 ATPase (AAA+ superfamily); KEGG: AAA ATPase; SPTR: uncharacterized protein; IMG reference gene:2504825545 YP_004442718.1 SPTR: uncharacterized protein; IMG reference gene:2504825546 YP_004442719.1 COGs: COG0817 Holliday junction resolvasome endonuclease subunit; InterPro IPR002176; KEGG: pgn:PGN_1113 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC; PRIAM: Crossover junction endodeoxyribonuclease; SPTR: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; IMG reference gene:2504825547; PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC YP_004442720.1 KEGG: pmz:HMPREF0659_A5168 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825548; PFAM: Dienelactone hydrolase family YP_004442721.1 KEGG: mac:MA4292 cell surface protein; SPTR: uncharacterized protein; IMG reference gene:2504825549 YP_004442722.1 InterPro IPR000601:IPR003961; KEGG: cpi:Cpin_1738 PKD domain containing protein; PFAM: PKD; Fibronectin, type III; SMART: Fibronectin, type III; SPTR: PKD domain protein; IMG reference gene:2504825550; PFAM: Fibronectin type III domain YP_004442723.1 KEGG: bth:BT_1490 surface protein; SPTR: uncharacterized protein; IMG reference gene:2504825551 YP_004442724.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: pgn:PGN_0728 outer membrane protein 40 precursor; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: Outer membrane protein 40; IMG reference gene:2504825552; PFAM: OmpA family YP_004442725.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: pgn:PGN_0729 outer membrane protein 41 precursor; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: Outer membrane protein HMP; IMG reference gene:2504825553; PFAM: OmpA family YP_004442726.1 COGs: COG1521 transcriptional regulator protein; HAMAP: Type III pantothenate kinase; InterPro IPR004619; KEGG: pgi:PG0447 pantothenate kinase; PFAM: Bordetella pertussis Bvg accessory factor; SPTR: Pantothenate kinase, type III; TIGRFAM: Bordetella pertussis Bvg accessory factor; IMG reference gene:2504825554; PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III YP_004442727.1 KEGG: pgn:PGN_1514 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825555 YP_004442728.1 InterPro IPR019734; KEGG: pgn:PGN_1513 hypothetical protein; SPTR: Tetratricopeptide repeat protein; IMG reference gene:2504825556 YP_004442729.1 KEGG: pdi:BDI_0182 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825557; PFAM: Protein of unknown function (DUF1239) YP_004442730.1 COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR002550:IPR000644:IPR005170; KEGG: pgn:PGN_1511 probable hemolysin; PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated region; SPTR: uncharacterized protein; IMG reference gene:2504825558; PFAM: Domain of unknown function DUF21; Transporter associated domain YP_004442731.1 KEGG: pgn:PGN_1510 peptidyl-prolyl cis-trans isomerase; SPTR: uncharacterized protein; IMG reference gene:2504825559 YP_004442732.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254:IPR001478:IPR011782; KEGG: pgn:PGN_0637 heat shock-related protease HtrA protein; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF; SPTR: protease do; TIGRFAM: Peptidase S1C, Do; IMG reference gene:2504825560; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family YP_004442733.1 COGs: COG5492 Bacterial surface protein containing Ig-like domains; InterPro IPR003343; KEGG: dae:Dtox_1961 Ig domain protein group 2 domain protein; PFAM: Bacterial Ig-like, group 2; SMART: Bacterial Ig-like, group 2; SPTR: Bacterial group 2 Ig-like protein; IMG reference gene:2504825561; PFAM: Bacterial Ig-like domain (group 2) YP_004442734.1 InterPro IPR003343; KEGG: polysaccharide deacetylase; PFAM: Bacterial Ig-like, group 2; SMART: Bacterial Ig-like, group 2; SPTR: Bacterial group 2 Ig-like protein; IMG reference gene:2504825562; PFAM: Bacterial Ig-like domain (group 2) YP_004442735.1 COGs: COG1373 ATPase (AAA+ superfamily); KEGG: bvu:BVU_0759 ATPase; SPTR: uncharacterized protein; IMG reference gene:2504825563 YP_004442736.1 COGs: COG2177 Cell division protein; InterPro IPR003838; KEGG: pgn:PGN_0573 cell division protein FtsX; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: Efflux ABC transporter, permease protein; IMG reference gene:2504825564; PFAM: Predicted permease YP_004442737.1 KEGG: pgn:PGN_0572 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825565; PFAM: Protein of unknown function (DUF3098) YP_004442738.1 COGs: COG1968 Uncharacterized bacitracin resistance protein; HAMAP: Undecaprenyl-diphosphatase; InterPro IPR003824; KEGG: pgi:PG1538 undecaprenol kinase, PFAM: Bacitracin resistance protein BacA; SPTR: Undecaprenyl-diphosphatase UppP; TIGRFAM: Bacitracin resistance protein BacA; IMG reference gene:2504825566; PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP YP_004442739.1 COGs: COG0130 Pseudouridine synthase; HAMAP: tRNA pseudouridine synthase B; InterPro IPR002501:IPR014780; KEGG: bvu:BVU_1172 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II, TruB, N-terminal; SPTR: tRNA pseudouridine synthase B; TIGRFAM: Pseudouridine synthase II, TruB, N-terminal, bacterial-type; IMG reference gene:2504825567; PFAM: TruB family pseudouridylate synthase (N terminal domain); TIGRFAM: tRNA pseudouridine 55 synthase YP_004442740.1 COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); InterPro IPR003699; KEGG: bvu:BVU_1173 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: Queuosine biosynthesis protein; IMG reference gene:2504825568; PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_004442741.1 COGs: COG0801 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; InterPro IPR000550; KEGG: bth:BT_3216 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; PRIAM:2-amino-4-hydroxy-6-hydroxymethyldihydropteri dinediphosphokinase; SPTR:2-amino-4-hydroxy-6-hydroxymethyldihydropterid inediphosphokinase; TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; IMG reference gene:2504825569; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YP_004442742.1 COGs: COG0486 GTPase; HAMAP: tRNA modification GTPase TrmE; InterPro IPR018948:IPR002917:IPR004520:IPR005225; KEGG: pgn:PGN_1062 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related; SPTR: tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; IMG reference gene:2504825570; PFAM: GTPase of unknown function; GTP-binding protein TrmE N-terminus; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein domain YP_004442743.1 KEGG: hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825571; PFAM: Nitrous oxide-stimulated promoter YP_004442744.1 KEGG: pgi:PG1374 immunoreactive 47 kDa antigen PG97; SPTR: Leucine rich repeat protein; IMG reference gene:2504825572 YP_004442745.1 InterPro IPR001611; KEGG: pgn:PGN_0852 immunoreactive 47 kDa antigen; SPTR: Leucine rich repeat protein; IMG reference gene:2504825573 YP_004442746.1 SPTR: uncharacterized protein; IMG reference gene:2504825574 YP_004442747.1 COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR000424:IPR011344; KEGG: pru:PRU_0881 single-strand binding protein; PFAM: Primosome PriB/single-strand DNA-binding; SPTR: Single-strand binding family protein; TIGRFAM: Single-strand DNA-binding; IMG reference gene:2504825575; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb) YP_004442748.1 COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR002550:IPR000644:IPR005170:IPR019862; KEGG: pgn:PGN_0370 hypothetical protein; PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated region; SPTR: Gliding motility-associated protein GldE; TIGRFAM: Gliding motility-associated protein GldE; IMG reference gene:2504825576; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain; TIGRFAM: gliding motility-associated protein GldE YP_004442749.1 InterPro IPR008278; KEGG: pgn:PGN_0371 hypothetical protein; PFAM: 4'-phosphopantetheinyl transferase; SPTR: 4'-phosphopantetheinyl transferase family protein; IMG reference gene:2504825577; PFAM: 4'-phosphopantetheinyl transferase superfamily YP_004442750.1 InterPro IPR001387; KEGG: pdi:BDI_0882 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: DNA-binding helix-turn-helix protein; IMG reference gene:2504825579; PFAM: Helix-turn-helix YP_004442751.1 COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR006176:IPR006108; KEGG: pgi:PG1080 3-hydroxyacyl-CoA dehydrogenase family protein; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; PRIAM: 3-hydroxybutyryl-CoA dehydrogenase; SPTR: 3-hydroxybutyryl-CoA dehydrogenase; IMG reference gene:2504825580; PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YP_004442752.1 COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III; HAMAP: Ribonuclease Z; InterPro IPR013471; KEGG: pgi:PG0739 ribonuclease Z; SPTR: ribonuclease Z; IMG reference gene:2504825581; PFAM: Metallo-beta-lactamase superfamily; TIGRFAM: ribonuclease Z YP_004442753.1 InterPro IPR002797; KEGG: pgn:PGN_1481 polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein; IMG reference gene:2504825582; PFAM: Polysaccharide biosynthesis protein YP_004442754.1 COGs: COG0320 Lipoate synthase; HAMAP: Lipoate synthase; InterPro IPR007197:IPR003698:IPR006638; KEGG: pdi:BDI_2192 lipoyl synthase; PFAM: Radical SAM; PRIAM: Lipoyl synthase; SMART: Elongator protein 3/MiaB/NifB; SPTR: Lipoyl synthase; TIGRFAM: Lipoate synthase; IMG reference gene:2504825583; PFAM: Radical SAM superfamily; TIGRFAM: lipoate synthase YP_004442755.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469:IPR001375; KEGG: pgi:PG0503 dipeptidyl aminopeptidase IV; PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; Peptidase S9, prolyl oligopeptidase, catalytic domain; PRIAM: Dipeptidyl-peptidase IV; SPTR: Peptidase, S9A/B/C family, catalytic domain protein; IMG reference gene:2504825584; PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region YP_004442756.1 InterPro IPR005184; KEGG: bvu:BVU_2381 hypothetical protein; PFAM: Domain of unknown function DUF306, Meta/HslJ; SPTR: META domain protein; IMG reference gene:2504825585; PFAM: META domain YP_004442757.1 COGs: COG0796 Glutamate racemase; HAMAP: Glutamate racemase; InterPro IPR015942:IPR004391; KEGG: pgi:PG0705 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; PRIAM: Glutamate racemase; SPTR: Glutamate racemase; TIGRFAM: Glutamate racemase; IMG reference gene:2504825586; PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: glutamate racemase YP_004442758.1 InterPro IPR000200; KEGG: pgn:PGN_0561 trypsin like proteinase PrtT; PFAM: Peptidase C10, streptopain; PRIAM: Streptopain; SPTR: Peptidase C10 family; IMG reference gene:2504825587; PFAM: Peptidase C10 family YP_004442759.1 COGs: COG3464 Transposase and inactivated derivatives; InterPro IPR002560; KEGG: transposase IS204/is1001/IS1096/is1165 family protein; PFAM: Transposase, IS204/IS1001/IS1096/IS1165; SPTR: Transposase; IMG reference gene:2504825588; PFAM: Transposase YP_004442760.1 KEGG: lby:Lbys_0995 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825589 YP_004442761.1 COGs: COG0227 Ribosomal protein L28; InterPro IPR001383; KEGG: pgn:PGN_1891 50S ribosomal protein L28; PFAM: Ribosomal protein L28; SPTR: Ribosomal protein L28; TIGRFAM: Ribosomal protein L28; IMG reference gene:2504825590; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28 YP_004442762.1 HAMAP: Ribosomal protein L33; InterPro IPR001705; KEGG: bth:BT_0915 50S ribosomal protein L33; PFAM: Ribosomal protein L33; SPTR: Ribosomal protein L33; TIGRFAM: Ribosomal protein L33; IMG reference gene:2504825591; PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type YP_004442763.1 KEGG: pgn:PGN_1889 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825592 YP_004442764.1 COGs: COG2820 Uridine phosphorylase; InterPro IPR000845; KEGG: pgn:PGN_1158 purine nucleoside phosphorylase; PFAM: Nucleoside phosphorylase; SPTR: Phosphorylase family; IMG reference gene:2504825593; PFAM: Phosphorylase superfamily YP_004442765.1 KEGG: pgn:PGN_1995 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825594 YP_004442766.1 SPTR: uncharacterized protein; IMG reference gene:2504825595 YP_004442767.1 SPTR: uncharacterized protein; IMG reference gene:2504825596 YP_004442768.1 SPTR: uncharacterized protein; IMG reference gene:2504825597 YP_004442769.1 KEGG: pgn:PGN_0874 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825598 YP_004442770.1 COGs: COG1538 Outer membrane protein; KEGG: pdi:BDI_0140 alkaline protease AprF; SPTR: uncharacterized protein; IMG reference gene:2504825599; PFAM: Outer membrane efflux protein YP_004442771.1 InterPro IPR001611; KEGG: fjo:Fjoh_1189 regulator of chromosome condensation, RCC1; PFAM: Leucine-rich repeat; SPTR: Leucine rich repeat protein; IMG reference gene:2504825600 YP_004442772.1 KEGG: tde:TDE0593 internalin-related protein; SPTR: Leucine rich repeat protein; IMG reference gene:2504825601 YP_004442773.1 KEGG: pgn:PGN_0852 immunoreactive 47 kDa antigen; SPTR: uncharacterized protein; IMG reference gene:2504825602 YP_004442774.1 KEGG: pgn:PGN_0852 immunoreactive 47 kDa antigen; SPTR: uncharacterized protein; IMG reference gene:2504825603 YP_004442775.1 KEGG: pgi:PG1374 immunoreactive 47 kDa antigen PG97; SPTR: uncharacterized protein; IMG reference gene:2504825604 YP_004442776.1 COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; KEGG: pgn:PGN_1298 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825605; PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: 6-pyruvoyl tetrahydropterin synthase/QueD family protein YP_004442777.1 COGs: COG0602 Organic radical activating protein; InterPro IPR007197; KEGG: pgi:PG1057 hypothetical protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein; IMG reference gene:2504825606; PFAM: Radical SAM superfamily YP_004442778.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: pgi:PG1058 OmpA family protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA family protein; IMG reference gene:2504825607; PFAM: WD40-like Beta Propeller Repeat; OmpA family YP_004442779.1 COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888; KEGG: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; IMG reference gene:2504825608; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase YP_004442780.1 COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR001509:IPR005888; KEGG: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: dTDP-glucose 4,6-dehydratase; SPTR: dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; IMG reference gene:2504825609; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase YP_004442781.1 KEGG: fjo:Fjoh_4986 fumarylacetoacetate (FAA) hydrolase; SPTR: uncharacterized protein; IMG reference gene:2504825610; PFAM: Fumarylacetoacetate (FAA) hydrolase family YP_004442782.1 COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056; KEGG: pgn:PGN_0518 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: Ribulose-phosphate 3-epimerase; TIGRFAM: Ribulose-phosphate 3-epimerase; IMG reference gene:2504825611; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase YP_004442783.1 COGs: COG0658 membrane metal-binding protein; InterPro IPR004477; KEGG: pgn:PGN_0519 probable competence protein; PFAM: ComEC/Rec2-related protein; SPTR: ComEC/Rec2-like protein; TIGRFAM: ComEC/Rec2-related protein; IMG reference gene:2504825612; PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein YP_004442784.1 COGs: COG1027 aspartate ammonia-lyase; InterPro IPR000362:IPR018951; KEGG: pgn:PGN_0377 aspartate ammonia-lyase; PFAM: Fumarate lyase; Fumarase C, C-terminal; PRIAM: aspartate ammonia-lyase; SPTR: aspartate ammonia-lyase; IMG reference gene:2504825613; PFAM: Fumarase C C-terminus; Lyase; TIGRFAM: aspartate ammonia-lyase YP_004442785.1 SPTR: lipoprotein; IMG reference gene:2504825614 YP_004442786.1 KEGG: pgn:PGN_1543 hypothetical protein; SPTR: lipoprotein; IMG reference gene:2504825615; PFAM: Orthopoxvirus protein of unknown function (DUF830) YP_004442787.1 KEGG: aci:ACIAD1233 signal peptide; SPTR: lipoprotein; IMG reference gene:2504825616 YP_004442788.1 InterPro IPR005242; KEGG: pgn:PGN_0249 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825617; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein YP_004442789.1 COGs: COG2195 Di- and tripeptidase; InterPro IPR002933:IPR011650:IPR001160; KEGG: pgn:PGN_0250 aminoacyl-histidine dipeptidase; PFAM: Peptidase M20, dimerisation; Peptidase M20; PRIAM: Xaa-His dipeptidase; SPTR: Xaa-His dipeptidase; TIGRFAM: Peptidase M20C, Xaa-His dipeptidase; IMG reference gene:2504825618; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: aminoacyl-histidine dipeptidase YP_004442790.1 COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase; InterPro IPR014043:IPR004410; KEGG: pmz:HMPREF0659_A6909 [acyl-carrier-protein] S-malonyltransferase; PFAM: Acyl transferase; PRIAM: [Acyl-carrier-protein] S-malonyltransferase; SPTR: [acyl-carrier-protein] S-malonyltransferase; TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; IMG reference gene:2504825619; PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase YP_004442791.1 COGs: COG0295 Cytidine deaminase; InterPro IPR002125:IPR006262; KEGG: pdi:BDI_2098 cytidine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR: Cytidine deaminase; TIGRFAM: Cytidine deaminase, homotetrameric; IMG reference gene:2504825620; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: cytidine deaminase, homotetrameric YP_004442792.1 COGs: COG1102 Cytidylate kinase; KEGG: ere:EUBREC_1239 cytidylate kinase; SPTR: uncharacterized protein; IMG reference gene:2504825621 YP_004442793.1 KEGG: pdi:BDI_0258 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825622 YP_004442794.1 COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145; KEGG: pdi:BDI_1495 ribosomal large subunit pseudouridine synthase D; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; SPTR: Pseudouridine synthase, RluA family; IMG reference gene:2504825623; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family YP_004442795.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR011284; KEGG: pgn:PGN_1375 beta-ketoacyl-acyl carrier protein reductase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: 3-oxoacyl-[acyl-carrier-protein] reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; IMG reference gene:2504825624; PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase YP_004442796.1 InterPro IPR001647; KEGG: pru:PRU_0296 TetR family transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; IMG reference gene:2504825625; PFAM: Bacterial regulatory proteins, tetR family YP_004442797.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: pgi:PG0052 sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; SPTR: Sensor histidine kinase; IMG reference gene:2504825626; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004442798.1 InterPro IPR007593; KEGG: mmi:MMAR_0454 hypothetical protein; PFAM: Interferon-induced transmembrane protein; SPTR: uncharacterized protein; IMG reference gene:2504825627; PFAM: Interferon-induced transmembrane protein YP_004442799.1 COGs: COG0030 Dimethyladenosine transferase (rRNA methylation); HAMAP: Ribosomal RNA adenine dimethylase; InterPro IPR001737:IPR011530:IPR020598; KEGG: pgn:PGN_0248 dimethyladenosine transferase; PFAM: Ribosomal RNA adenine methylase transferase; SMART: Ribosomal RNA adenine methylase transferase, N-terminal; SPTR: Dimethyladenosine transferase; TIGRFAM: Ribosomal RNA adenine dimethylase; IMG reference gene:2504825628; PFAM: Ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase YP_004442800.1 COGs: COG1785 Alkaline phosphatase; InterPro IPR001952; KEGG: pgn:PGN_1049 alkaline phosphatase; PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase; SPTR: Alkaline phosphatase family protein; IMG reference gene:2504825629; PFAM: Alkaline phosphatase YP_004442801.1 COGs: COG2962 permease; InterPro IPR000620; KEGG: dds:Ddes_0512 protein of unknown function DUF6 transmembrane; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: membrane protein; IMG reference gene:2504825630; PFAM: EamA-like transporter family YP_004442802.1 COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR009042:IPR007627:IPR007624:IPR007630:IPR 014284; KEGG: pgi:PG0594 RNA polymerase sigma-70 factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4; SPTR: RNA polymerase sigma factor RpoD; TIGRFAM: RNA polymerase sigma-70; IMG reference gene:2504825631; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004442803.1 COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR001264:IPR001460; KEGG: pgi:PG0794 penicillin-binding protein 1A, PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Transglycosylase; IMG reference gene:2504825632; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase YP_004442804.1 COGs: COG3855 conserved hypothetical protein; HAMAP: Fructose-1,6-bisphosphatase, Bacillus type; InterPro IPR009164; KEGG: pgn:PGN_0816 fructose-1,6-bisphosphatase; PFAM: Fructose-1,6-bisphosphatase, Bacillus type; PRIAM: Fructose-bisphosphatase; SPTR: Firmicute fructose-1,6-bisphosphatase; IMG reference gene:2504825633; PFAM: Firmicute fructose-1,6-bisphosphatase YP_004442805.1 KEGG: gur:Gura_4038 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825634 YP_004442806.1 COGs: COG2856 Zn peptidase; InterPro IPR001387:IPR010359; KEGG: kol:Kole_0647 protein of unknown function DUF955; PFAM: Helix-turn-helix type 3; Protein of unknown function DUF955; SMART: Helix-turn-helix type 3; SPTR: DNA-binding helix-turn-helix protein; manually curated; IMG reference gene:2504825635; PFAM: Helix-turn-helix; Domain of unknown function (DUF955) YP_004442807.1 COGs: COG0755 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR002541; KEGG: bvu:BVU_2769 cytochrome c biogenesis protein; PFAM: Cytochrome c assembly protein; SPTR: cytochrome c-type biogenesis protein CcsB; IMG reference gene:2504825636; PFAM: ResB-like family; Cytochrome C assembly protein; TIGRFAM: cytochrome c-type biogenesis protein CcsB YP_004442808.1 COGs: COG3488 thiol oxidoreductase; InterPro IPR010538; KEGG: bvu:BVU_2770 hypothetical protein; PFAM: Protein of unknown function DUF1111; SPTR: lipoprotein; IMG reference gene:2504825637; PFAM: Protein of unknown function (DUF1111) YP_004442809.1 COGs: COG3488 thiol oxidoreductase; InterPro IPR010538; KEGG: bvu:BVU_2770 hypothetical protein; PFAM: Protein of unknown function DUF1111; SPTR: lipoprotein; IMG reference gene:2504825638; PFAM: Protein of unknown function (DUF1111) YP_004442810.1 COGs: COG3489 periplasmic lipoprotein; InterPro IPR018976; KEGG: bvu:BVU_2771 iron-regulated protein A precursor; PFAM: Peptidase M75, Imelysin; SPTR: Imelysin; IMG reference gene:2504825639; PFAM: Imelysin YP_004442811.1 KEGG: bvu:BVU_2772 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825640 YP_004442812.1 COGs: COG0282 acetate kinase; HAMAP: acetate kinase; InterPro IPR000890:IPR004372; KEGG: pgi:PG1081 acetate kinase; PFAM: acetate/butyrate kinase; PRIAM: acetate kinase; SPTR: acetate kinase; TIGRFAM: acetate kinase; IMG reference gene:2504825641; PFAM: acetokinase family; TIGRFAM: acetate kinase YP_004442813.1 COGs: COG0280 Phosphotransacetylase; InterPro IPR002505:IPR004614; KEGG: pgn:PGN_1179 phosphotransacetylase; PFAM: Phosphate acetyl/butaryl transferase; PRIAM: Phosphate acetyltransferase; SPTR: Phosphate acetyltransferase; TIGRFAM: Phosphate acetyltransferase; IMG reference gene:2504825642; PFAM: Phosphate acetyl/butaryl transferase; TIGRFAM: phosphate acetyltransferase YP_004442814.1 InterPro IPR019271; KEGG: bfr:BF3025 hypothetical protein; PFAM: Protein of unknown function DUF2284, metal-binding; SPTR: uncharacterized protein; IMG reference gene:2504825643; PFAM: Predicted metal-binding protein (DUF2284) YP_004442815.1 COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873; KEGG: pgi:PG1829 long-chain-fatty-acid--CoA ligase, PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: AMP-binding enzyme; IMG reference gene:2504825644; PFAM: AMP-binding enzyme YP_004442816.1 COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; HAMAP: Erythronate-4-phosphate dehydrogenase; InterPro IPR006139:IPR006140; KEGG: pgn:PGN_1359 erythronate-4-phosphate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; PRIAM: 4-phosphoerythronate dehydrogenase; SPTR: 4-phosphoerythronate dehydrogenase; IMG reference gene:2504825645; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004442817.1 COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839:IPR011282; KEGG: pgi:PG0481 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: Aminotransferase, class I/II; PRIAM: Glycine C-acetyltransferase; SPTR: Glycine C-acetyltransferase; TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; IMG reference gene:2504825646; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase; 2-amino-3-ketobutyrate coenzyme A ligase YP_004442818.1 KEGG: pdi:BDI_1862 hypothetical protein; SPTR: uncharacterized protein; IMG reference gene:2504825647 YP_004442819.1 InterPro IPR003343; KEGG: swo:Swol_0162 subtilisin-like serine proteases-like; PFAM: Bacterial Ig-like, group 2; SMART: Bacterial Ig-like, group 2; SPTR: Bacterial group 2 Ig-like protein; IMG reference gene:2504825648; PFAM: Bacterial Ig-like domain (group 2) YP_004442820.1 COGs: COG0112 Glycine/serine hydroxymethyltransferase; InterPro IPR001085; KEGG: pgn:PGN_0038 serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase; PRIAM: Glycine hydroxymethyltransferase; SPTR: Glycine hydroxymethyltransferase; IMG reference gene:2504825649; PFAM: Serine hydroxymethyltransferase YP_004442821.1 COGs: COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I N-terminal domain; InterPro IPR004646:IPR004647; KEGG: pgn:PGN_0893 fumarate hydratase class I anaerobic; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; PRIAM: Fumarate hydratase; SPTR: Fumarate hydratase class I, anaerobic; TIGRFAM: Fe-S type hydro-lyases tartrate/fumarate beta region; IMG reference gene:2504825650; PFAM: Fumarase C-terminus; Fumarate hydratase (Fumerase); TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region